Query psy6533
Match_columns 387
No_of_seqs 294 out of 1501
Neff 6.5
Searched_HMMs 29240
Date Fri Aug 16 20:30:42 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6533.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6533hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f3t_A Protein argonaute-2; hy 100.0 1.5E-67 5.1E-72 576.3 19.4 314 36-360 414-823 (861)
2 2yhb_A QDE-2, post-transcripti 100.0 1.7E-67 5.7E-72 537.9 8.5 270 79-358 33-401 (437)
3 4f1n_A Kpago; argonaute, RNAI, 100.0 3.3E-64 1.1E-68 553.4 15.7 222 137-358 685-1005(1046)
4 2yha_A Post-transcriptional ge 100.0 3.8E-49 1.3E-53 397.2 10.1 221 79-358 33-352 (388)
5 1yvu_A Hypothetical protein AQ 100.0 7E-48 2.4E-52 412.3 12.6 243 79-357 371-694 (706)
6 1u04_A Argonaute, hypothetical 100.0 6.4E-43 2.2E-47 375.0 10.7 190 138-358 479-758 (771)
7 3ho1_A Argonaute; argonaute, p 100.0 4E-42 1.4E-46 363.8 13.5 233 77-350 358-664 (685)
8 2w42_A PIWI, putative uncharac 100.0 5.7E-38 2E-42 319.5 9.4 203 141-360 116-409 (427)
9 2yhb_A QDE-2, post-transcripti 100.0 3E-31 1E-35 270.5 10.4 122 11-153 206-331 (437)
10 4f3t_A Protein argonaute-2; hy 100.0 1E-29 3.5E-34 277.9 12.8 153 10-185 635-790 (861)
11 4f1n_A Kpago; argonaute, RNAI, 99.9 1.2E-28 4E-33 271.7 8.8 151 12-184 806-973 (1046)
12 2yha_A Post-transcriptional ge 99.7 4.5E-17 1.6E-21 163.7 9.8 77 11-107 206-286 (388)
13 1yvu_A Hypothetical protein AQ 99.7 1.4E-16 4.9E-21 170.6 11.6 93 12-153 540-632 (706)
14 3ho1_A Argonaute; argonaute, p 99.5 1.5E-14 5.1E-19 153.5 10.7 123 15-184 515-639 (685)
15 2w42_A PIWI, putative uncharac 99.4 2.2E-13 7.6E-18 138.4 7.9 92 12-136 219-318 (427)
16 1u04_A Argonaute, hypothetical 99.4 2.7E-13 9.4E-18 145.9 8.7 96 14-161 597-694 (771)
17 4g0o_A Protein argonaute 5; MI 99.3 3.9E-13 1.3E-17 116.5 0.9 106 79-194 30-139 (139)
18 4g0x_A Protein argonaute 1; MI 99.2 4E-13 1.4E-17 117.5 -1.2 58 137-194 87-147 (147)
19 3luc_A Protein argonaute-2; MI 99.2 1.7E-12 5.8E-17 112.3 1.6 103 79-191 32-138 (138)
20 4g0m_A Protein argonaute 2; MI 99.2 5.2E-12 1.8E-16 110.8 1.1 108 79-194 31-150 (150)
21 2w36_A Endonuclease V; hypoxan 42.4 1.2E+02 0.0043 27.5 9.3 122 219-354 87-222 (225)
22 3qbz_A DDK kinase regulatory s 29.7 23 0.0008 30.6 2.0 53 196-248 57-117 (160)
23 3ga2_A Endonuclease V; alpha-b 27.7 51 0.0017 30.5 4.1 52 299-359 185-236 (246)
24 3qbz_A DDK kinase regulatory s 25.3 47 0.0016 28.7 3.1 61 27-107 48-117 (160)
25 3s82_A S-adenosylmethionine sy 22.5 45 0.0015 33.0 2.7 31 327-357 143-173 (407)
26 3iml_A S-adenosylmethionine sy 22.2 45 0.0016 32.8 2.7 31 327-357 131-161 (399)
27 1p7l_A S-adenosylmethionine sy 20.6 51 0.0018 32.3 2.7 32 327-358 123-154 (383)
No 1
>4f3t_A Protein argonaute-2; hydrolase/gene regulation, RNAI, slicer, hydrolase-RNA; 2.25A {Homo sapiens} PDB: 4ei1_A 4ei3_A* 1r4k_A 1si2_A 1si3_A
Probab=100.00 E-value=1.5e-67 Score=576.27 Aligned_cols=314 Identities=38% Similarity=0.632 Sum_probs=249.1
Q ss_pred CCCeeEEEeecc------CChhHHHHHHHh-cCCCCCcccccccccc-------cchHHHHHHHHHHHhhhccCC--CcE
Q psy6533 36 VKPVHIIFYRDG------VSEGQFQAVMRR-CGPCSNRSVAGLSYTI-------FTGAEISAIKRACQGVEANYN--PKV 99 (387)
Q Consensus 36 ~~P~~Ii~yRDG------Vsegq~~~v~~~-~~~~~~~~~~~~~y~~-------~~~~E~~~ik~a~~~~~~~~~--Pk~ 99 (387)
.||..-|.|.++ ...|+....-.. ..+...+.|+.+.+.. .....+..+.++|..+|.... |.+
T Consensus 414 vL~~P~I~y~~~~~~~~~~~~g~W~~~~~~f~~~~~l~~W~vv~~~~~~~~~~~~~~~f~~~L~~~~~~~G~~i~~~p~~ 493 (861)
T 4f3t_A 414 VLQPPSILYGGRNKAIATPVQGVWDMRNKQFHTGIEIKVWAIACFAPQRQCTEVHLKSFTEQLRKISRDAGMPIQGQPCF 493 (861)
T ss_dssp ECCCCCEECCSSSCCEECCBTTBCCCTTCCCTBCCCBCCEEEEECSCTTTSCHHHHHHHHHHHHHHHHHHTCCBCSCCSE
T ss_pred EecCceEEecCCcccccCCCCCceeccCCEEccCcccceeEEEEecCcccccHHHHHHHHHHHHHHHhhCCcccCCCCeE
Confidence 467777889864 134554211000 0122346677664321 123567888999998887664 433
Q ss_pred EEEEecccccccccCCCCCCCCCCCCCCCCCccccccccccCCCcceeeeeec--eeeecceeeeccccccccCCchhHH
Q psy6533 100 TFLVVQKRHHTRFFPTSPSEGDGSRNNNVRPGTIVDTTITHPTDLDFYLVSHQ--SIQVGILTQCIKEKTVFKMNPATTG 177 (387)
Q Consensus 100 t~Ivv~KrhhtRff~~~~~~~~~~~~~N~~pGTvVD~~Vt~P~~~dfY~~~k~--~~~~GI~TQcv~~~tv~k~n~~~~~ 177 (387)
.-+...-..-..+|..- .+..++..+ .+|+.|...+.|..+|+ ++..||+|||+..+++.+.++|++.
T Consensus 494 ~~~~~~~~~~~~~~~~l---------~~~~~~~ql-vl~Ilp~~~~~Y~~IK~~~~~~~gI~TQcv~~~~~~k~~~q~~~ 563 (861)
T 4f3t_A 494 CKYAQGADSVEPMFRHL---------KNTYAGLQL-VVVILPGKTPVYAEVKRVGDTVLGMATQCVQMKNVQRTTPQTLS 563 (861)
T ss_dssp EEECCSSSSHHHHHHHH---------HHHSTTCCE-EEEEESSSCTHHHHHHHHHHHTSCCEEEEEETHHHHSCCHHHHH
T ss_pred EEecCchHHHHHHHHHH---------HhhcCCCcE-EEEEeCCCccHHHHHHHHhcccCCcceEEEEecccccccHHHHH
Confidence 22111001111222100 000122222 25788877889999999 7899999999999999888999999
Q ss_pred HHHHHHHhhcCCcccccc--------------------------------------------------------------
Q psy6533 178 NILLKINAKLNGINHYVN-------------------------------------------------------------- 195 (387)
Q Consensus 178 ni~lKiN~KlGG~n~~l~-------------------------------------------------------------- 195 (387)
||++|||+||||+||.+.
T Consensus 564 ni~lKiN~KlGG~n~~l~~~~~~~~~~~~tmiiG~DV~H~~~~~~~~pSiaa~vaS~d~~~~~y~~~~~~Q~~~~E~i~~ 643 (861)
T 4f3t_A 564 NLCLKINVKLGGVNNILLPQGRPPVFQQPVIFLGADVTHPPAGDGKKPSIAAVVGSMDAHPNRYCATVRVQQHRQEIIQD 643 (861)
T ss_dssp HHHHHHHHHTTCBCCEECSTTSCGGGGSCEEEEEEEEECCC----CCCEEEEEEEECSSSSCCEEEEEEEESTTCCSCTT
T ss_pred HHHHHHHHhcCCcceeccccccccccCCceEEEEEEecccCCCCCCCceEEEEEEEcCCCcceEEEEEEEcCCCccHHHH
Confidence 999999999999999742
Q ss_pred ----------------CCCCceEEEeccCCChhhHHHHHHHHHHHHHHHHhhcccCCCCcEEEEEEeeccccccccCCCC
Q psy6533 196 ----------------KVKPVHIIFYRDGVSEGQFQAVMSAEISAIKRACQGVEANYNPKVTFLVVQKRHHTRFFPTSPS 259 (387)
Q Consensus 196 ----------------~~~P~~IIiYRdGvsegq~~~v~~~Ev~~I~~a~~~~~~~~~Pkit~Ivv~Krh~~Rff~~~~~ 259 (387)
|.+|++|||||||||||||.+|+++|+++|++||.+++.+|.|+||||||+||||+|||+. +.
T Consensus 644 l~~~~~~~L~~~~~~~~~~P~~IiiyRDGVsegq~~~v~~~Ev~~i~~a~~~~~~~~~P~it~Ivv~Krh~tRff~~-~~ 722 (861)
T 4f3t_A 644 LAAMVRELLIQFYKSTRFKPTRIIFYRDGVSEGQFQQVLHHELLAIREACIKLEKDYQPGITFIVVQKRHHTRLFCT-DK 722 (861)
T ss_dssp HHHHHHHHHHHHHHHHSCCCSEEEEEEESCCGGGHHHHHHHHHHHHHHHHHHHCTTCCCEEEEEEEECCSCCCEEES-SG
T ss_pred HHHHHHHHHHHHHHHhCCCCceEEEEecCCChHHHHHHHHHHHHHHHHHHHHhccCCCCcEEEEEEEccccceeeec-CC
Confidence 8999999999999999999999999999999999999999999999999999999999997 33
Q ss_pred CCCCCCCCCCCcceecccccccCCCcceeeccccccccccCCceEEEEecCCCCCHHHHHHHHHHhhhhccccCCCccCc
Q psy6533 260 EGDGSRNNNVRPGTIVDTTITHPTDLDFYLVSHQSIQGTARPTKYYRLWDEYNLTDDETEEMTYYLCHLFSRCTRSVSYP 339 (387)
Q Consensus 260 ~~~~~~~~N~~pGTvVd~~it~~~~~dFyL~s~~~~qGTarPt~Y~Vl~d~~~~~~d~lq~lT~~Lc~~y~~~~~~vslP 339 (387)
.+..++.+||+||||||++||+|..+||||+||.++|||||||||+||+||+++++|+||+|||+|||+|+||+++||||
T Consensus 723 ~~~~~~~~N~~pGTvVD~~it~p~~~dFyL~Sh~~~qGTarPthY~Vl~d~~~~~~d~lq~lty~Lc~~y~~~t~~vsvp 802 (861)
T 4f3t_A 723 NERVGKSGNIPAGTTVDTKITHPTEFDFYLCSHAGIQGTSRPSHYHVLWDDNRFSSDELQILTYQLCHTYVRCTRSVSIP 802 (861)
T ss_dssp GGCBTTTTBCCTTEEECSSSSCSSBCEEEEECSCCCSSCCCCEEEEEEEETTCCCHHHHHHHHHHHTTCCTTSSBCCSSC
T ss_pred cccccccCCCCCceeccCccccCCCCEEEEEEEecccccccCceEEEEeCCCCCCHHHHHHHHHHHhhhhhccCCCCCCc
Confidence 23346789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHhhhhhhhcccC
Q psy6533 340 APTYYAHLAAFRGRVYIKNRH 360 (387)
Q Consensus 340 aP~~yA~~~a~R~~~~~~~~~ 360 (387)
||+||||++|+|||+||....
T Consensus 803 aP~yYA~~~a~R~r~~l~~~~ 823 (861)
T 4f3t_A 803 APAYYAHLVAFRARYHLVDKE 823 (861)
T ss_dssp HHHHHHHHHHHHHHHHHCCC-
T ss_pred hHHHHHHHHHHHHHHhhcccc
Confidence 999999999999999997643
No 2
>2yhb_A QDE-2, post-transcriptional gene silencing protein QDE-2; RNA binding protein, argonaute, miRNA, siRNA; 3.65A {Neurospora crassa}
Probab=100.00 E-value=1.7e-67 Score=537.86 Aligned_cols=270 Identities=32% Similarity=0.505 Sum_probs=165.0
Q ss_pred HHHHHHHHHHHhhhccCCCcE-EEEEecccccccccCCCCCCCCCCCCCCCCCccccccccccC-CCcceeeeeec--ee
Q psy6533 79 AEISAIKRACQGVEANYNPKV-TFLVVQKRHHTRFFPTSPSEGDGSRNNNVRPGTIVDTTITHP-TDLDFYLVSHQ--SI 154 (387)
Q Consensus 79 ~E~~~ik~a~~~~~~~~~Pk~-t~Ivv~KrhhtRff~~~~~~~~~~~~~N~~pGTvVD~~Vt~P-~~~dfY~~~k~--~~ 154 (387)
..++.+.+.|..+|....++. ..++.......+.|. ... ...+..|..+ +|+.| ...+.|..+|+ ++
T Consensus 33 ~f~~~l~~~~~~~G~~i~~p~~~~~~~~~~~~~~~~~--~~~----~~~~~~~~lv---l~ilp~~~~~~Y~~iK~~~~~ 103 (437)
T 2yhb_A 33 QAMTAFAEFLNRTGIPINPRFSPGMSMSVPGSEKEFF--AKV----KELMSSHQFV---VVLLPRKDVAIYNMVKRAADI 103 (437)
T ss_dssp HHHHHHHHHHHHTTCCBCSCCCCCEEEECCSSHHHHH--HHH----HHHHHTCSEE---EEEESSCCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCEeCCCCCcceecCCCchHHHHH--HHH----hhccCCCcEE---EEEECCCChhHHHHHHHHHhc
Confidence 467788899999887764431 111111122233331 000 0000122222 46777 44578999999 68
Q ss_pred eecceeeeccccccccCCch--hHHHHHHHHHhhcCCcccccc-------------------------------------
Q psy6533 155 QVGILTQCIKEKTVFKMNPA--TTGNILLKINAKLNGINHYVN------------------------------------- 195 (387)
Q Consensus 155 ~~GI~TQcv~~~tv~k~n~~--~~~ni~lKiN~KlGG~n~~l~------------------------------------- 195 (387)
..||+|||+..+++.+.+++ ++.||++|||+||||+||.|.
T Consensus 104 ~~gI~TQcv~~~~~~k~~~q~s~~~Ni~lKiN~KlGG~n~~l~~~~~~~~~~~tmiiG~DV~H~~~~~~g~~~~~~pSia 183 (437)
T 2yhb_A 104 TFGVHTVCCVAEKFLSTKGQLGYFANVGLKVNLKFGGTNHNIKTPIPLLAKGKTMVVGYDVTHPTNLAAGQSPASAPSIV 183 (437)
T ss_dssp TSCCEEEEEEHHHHHCSTTHHHHHHHHHHHHHHHTTCBCCCCSSCCHHHHTTCEEEEEEEECCCSCCCTTCCSTTSCEEE
T ss_pred ccCcccEEEehhHhcCcccHHHHHHHHHHHHHHHhCCcceeccccccccCCCCEEEEEEEEeccccccCCCcCCCCCEEE
Confidence 99999999999999888888 999999999999999998531
Q ss_pred -------------------------------------------------CCCCceEEEeccCCChhhHHHHHHHHHHHHH
Q psy6533 196 -------------------------------------------------KVKPVHIIFYRDGVSEGQFQAVMSAEISAIK 226 (387)
Q Consensus 196 -------------------------------------------------~~~P~~IIiYRdGvsegq~~~v~~~Ev~~I~ 226 (387)
|.+|++|||||||||||||.+|+++|+++|+
T Consensus 184 a~vaS~d~~~~~y~~~~~~Q~~~~~E~i~~l~~~~~~~L~~~~~~~~~~~~~P~rIiiyRDGVseGqf~~V~~~El~~i~ 263 (437)
T 2yhb_A 184 GLVSTIDQHLGQWPAMVWNNPHGQESMTEQFTDKFKTRLELWRSNPANNRSLPENILIFRDGVSEGQFQMVIKDELPLVR 263 (437)
T ss_dssp EEEECCSTTCCCCCEEEEEETTTHHHHHHHHHHHHHHHHHHHHTCGGGTTCCCSEEEEEEESCCTTTHHHHHHHTHHHHH
T ss_pred EEEEecCCCcCeeeeEEEEcCCcchhHHHHHHHHHHHHHHHHHhhhhhcCCCCceEEEEeCCcchHHHHHHHHHHHHHHH
Confidence 2489999999999999999999999999999
Q ss_pred HHHhhcccCC-CCcEEEEEEeeccccccccCCCCCCCCCCCCCCCcceecccccccCCCcceeeccccccccccCCceEE
Q psy6533 227 RACQGVEANY-NPKVTFLVVQKRHHTRFFPTSPSEGDGSRNNNVRPGTIVDTTITHPTDLDFYLVSHQSIQGTARPTKYY 305 (387)
Q Consensus 227 ~a~~~~~~~~-~Pkit~Ivv~Krh~~Rff~~~~~~~~~~~~~N~~pGTvVd~~it~~~~~dFyL~s~~~~qGTarPt~Y~ 305 (387)
+||.+++.++ .|+||||||+||||+|||+. +..+..++.+||+||||||++||+|..+||||+||.++|||+|||||+
T Consensus 264 ~a~~~~~~~~~~p~it~Ivv~Krh~tRff~~-~~~~~~~~~~N~~pGTvVD~~it~p~~~dFyL~Sh~~~qGTarPthY~ 342 (437)
T 2yhb_A 264 AACKLVYPAGKLPRITLIVSVKRHQTRFFPT-DPKHIHFKSKSPKEGTVVDRGVTNVRYWDFFLQAHASLQGTARSAHYT 342 (437)
T ss_dssp HHHHHHSCTTCCCEEEEEEEC--------------------------------------------------------CEE
T ss_pred HHHHHhhcccCCCCEEEEEEEecccceeccC-CccccccccCCCCCceEecccccCCCCceEEEEecccccccCCceEEE
Confidence 9999998777 89999999999999999997 332222367899999999999999999999999999999999999999
Q ss_pred EEecCC------CCCHHHHHHHHHHhhhhccccCCCccCcchHHHHHHHHhhhhhhhcc
Q psy6533 306 RLWDEY------NLTDDETEEMTYYLCHLFSRCTRSVSYPAPTYYAHLAAFRGRVYIKN 358 (387)
Q Consensus 306 Vl~d~~------~~~~d~lq~lT~~Lc~~y~~~~~~vslPaP~~yA~~~a~R~~~~~~~ 358 (387)
||+||+ ++++|+||+|||+|||+|+||+++||||+|+||||++|+|||.||.+
T Consensus 343 Vl~de~f~~~~~~~~~d~lq~lTy~Lc~~y~r~t~sVsipaP~yYAh~~a~R~r~~l~~ 401 (437)
T 2yhb_A 343 VLVDEIFRADYGNKAADTLEQLTHDMCYLFGRATKAVSICPPAYYADLVCDRARIHQKE 401 (437)
T ss_dssp EEEESSHHHHHGGGHHHHHHHHHHHHHTC----------CHHHHHHHHHHHHHHHHCHH
T ss_pred EEeCCccccccCCCCHHHHHHHHHHHHHhhccccCCCCcCCHHHHHHHHHHHHHHHhhh
Confidence 999998 99999999999999999999999999999999999999999999985
No 3
>4f1n_A Kpago; argonaute, RNAI, RNAse H, RNA binding protein-RNA complex; 3.19A {Vanderwaltozyma polyspora}
Probab=100.00 E-value=3.3e-64 Score=553.40 Aligned_cols=222 Identities=34% Similarity=0.577 Sum_probs=204.0
Q ss_pred ccccCCC--cceeeeeec--eeeecceeeeccccccccCCchhHHHHHHHHHhhcCCcccccc-----------------
Q psy6533 137 TITHPTD--LDFYLVSHQ--SIQVGILTQCIKEKTVFKMNPATTGNILLKINAKLNGINHYVN----------------- 195 (387)
Q Consensus 137 ~Vt~P~~--~dfY~~~k~--~~~~GI~TQcv~~~tv~k~n~~~~~ni~lKiN~KlGG~n~~l~----------------- 195 (387)
+|++|.. .+.|..+|+ ++.+||+|||+..+++.+.++++++||++|||+||||+||.+.
T Consensus 685 l~Ilp~~~~~~~Y~~IK~~~d~~~gV~TQcv~~~t~~k~~~q~~~NI~lKiN~KLGG~n~~l~~~~~~~l~~~~~~~ptM 764 (1046)
T 4f1n_A 685 LYVLRRGNDSAVYDRLKYITDLKFGALNSCVVWDNFKKNSIQYNSNVVMKMNLKLLGSNHSLSIENNKLLIDKESNLPIL 764 (1046)
T ss_dssp EEEESSSCCHHHHHHHHHHHTTTTCCCEEEEEHHHHTTCCHHHHHHHHHHHHHHTTCBCCEECTTGGGGGEETTTTEECE
T ss_pred EEEecCCCCchHHHHHHHHhhccCCcccEEEehhhhccccHHHHHHHHHHHHHhcCCeeeeccccccccccccccCCceE
Confidence 5677744 678999998 7899999999999999888999999999999999999998652
Q ss_pred -----------------------------------------------------------------CCCCceEEEeccCCC
Q psy6533 196 -----------------------------------------------------------------KVKPVHIIFYRDGVS 210 (387)
Q Consensus 196 -----------------------------------------------------------------~~~P~~IIiYRdGvs 210 (387)
|.+|++|||||||||
T Consensus 765 iiG~DVtH~p~~~~~SiaavVaS~d~~~t~y~s~~~~Q~~~~~Eii~~L~~~~~~~L~~y~~~n~~~lP~~IIiYRDGVS 844 (1046)
T 4f1n_A 765 VLGSDVTHYPEKDQNSIASLVGSYDDKFTQFPGDYMLQDGPGEEIITNVGSLMLNRLKIYQKHNNGKLPTKIMYFRDGVS 844 (1046)
T ss_dssp EEEEEEECCSSTTCEEEEEEEECCSSSCCCCCEEEEEEEEETCCSCTTGGGGHHHHHHHHHHTTTTCCCSSEEEEEESCC
T ss_pred EEeeeeecCCCCCCCeeeEEEEEECCCcCeEeeEEEEecCCCccHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEEecCCc
Confidence 679999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHhhcc------cCCCCcEEEEEEeeccccccccCCCC-CCCCC------CCCCCCcceeccc
Q psy6533 211 EGQFQAVMSAEISAIKRACQGVE------ANYNPKVTFLVVQKRHHTRFFPTSPS-EGDGS------RNNNVRPGTIVDT 277 (387)
Q Consensus 211 egq~~~v~~~Ev~~I~~a~~~~~------~~~~Pkit~Ivv~Krh~~Rff~~~~~-~~~~~------~~~N~~pGTvVd~ 277 (387)
||||.+|++.|+++|++||.++. .+|.|+||||||+||||+|||+.... .+..+ ..+||+||||||+
T Consensus 845 EGQf~~Vl~~Ev~~Ik~a~~~~~~~~~~~~~y~Pkit~IVV~KRhhtRfF~~~~~~~d~~g~~~~~~~~~N~~pGTVVD~ 924 (1046)
T 4f1n_A 845 VDQFSQVVKIEVKSIKESVRKFGPQLNGGNKYDPPVTCIATVKRNQVRFIPIQENAKNEKGEEVAVQSMGNVMPGTVVDR 924 (1046)
T ss_dssp GGGHHHHHHTHHHHHHHHHHHHTHHHHTSCCCCCCEEEEEEECSCSCCEEECCSEEECTTSCEEECEETTEECTTEEECS
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhcccccCCCCCEEEEEEecCccceeeeccccccccccccccccccCCCCCCcEeec
Confidence 99999999999999999999985 57899999999999999999996211 11111 3689999999999
Q ss_pred ccccCCCcceeeccccccccccCCceEEEEecCCCCCHHHHHHHHHHhhhhccccCCCccCcchHHHHHHHHhhhhhhhc
Q psy6533 278 TITHPTDLDFYLVSHQSIQGTARPTKYYRLWDEYNLTDDETEEMTYYLCHLFSRCTRSVSYPAPTYYAHLAAFRGRVYIK 357 (387)
Q Consensus 278 ~it~~~~~dFyL~s~~~~qGTarPt~Y~Vl~d~~~~~~d~lq~lT~~Lc~~y~~~~~~vslPaP~~yA~~~a~R~~~~~~ 357 (387)
+||+|..+||||+||.++|||||||||+||+||+++++|+||+|||+|||+|+||+++||||+||||||++|+|||+||+
T Consensus 925 ~It~p~~~DFyL~Sh~~~qGTarPthY~VL~De~~~~~d~lQ~LTy~LC~~y~r~t~sVsvPaP~yYAhlla~R~r~~~~ 1004 (1046)
T 4f1n_A 925 GITSVAHFDFFIQSHQALKGTGVPCHYWCLYDENQSTSDYLQEICNNLCYIFGRSTTSVKVPAPVYYADLLCTRATCFFK 1004 (1046)
T ss_dssp SSSCSSBEEEEEECSCCCSSSCCCEEEEEEEESSCCCHHHHHHHHHHTTSCCTTSSBCCSSCHHHHHHHHHHHHHHHHHH
T ss_pred cccccCcceEEEEccccCCCcccCcEEEEEeCCCCCCHHHHHHHHHHHhhhhcccCCCccccHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred c
Q psy6533 358 N 358 (387)
Q Consensus 358 ~ 358 (387)
.
T Consensus 1005 ~ 1005 (1046)
T 4f1n_A 1005 A 1005 (1046)
T ss_dssp H
T ss_pred h
Confidence 5
No 4
>2yha_A Post-transcriptional gene silencing protein QDE-2; RNA binding protein, argonaute, miRNA, siRNA; HET: GOL; 1.85A {Neurospora crassa} PDB: 2xdy_A
Probab=100.00 E-value=3.8e-49 Score=397.23 Aligned_cols=221 Identities=29% Similarity=0.445 Sum_probs=165.6
Q ss_pred HHHHHHHHHHHhhhccCCCc-EEEEEecccccccccCCCCCCCCCCCCCCCCCccccccccccCC-Ccceeeeeec--ee
Q psy6533 79 AEISAIKRACQGVEANYNPK-VTFLVVQKRHHTRFFPTSPSEGDGSRNNNVRPGTIVDTTITHPT-DLDFYLVSHQ--SI 154 (387)
Q Consensus 79 ~E~~~ik~a~~~~~~~~~Pk-~t~Ivv~KrhhtRff~~~~~~~~~~~~~N~~pGTvVD~~Vt~P~-~~dfY~~~k~--~~ 154 (387)
..+..+.+.|..+|....++ ..+++.......+.| . ... ...+..|-. .+++.|. ..+.|..+|+ ++
T Consensus 33 ~f~~~l~~~~~~~G~~i~~p~~~~~~~~~~~~~~~~-~-~~~----~~~~~~~~l---vl~ilp~~~~~~Y~~iK~~~~~ 103 (388)
T 2yha_A 33 QAMTAFAEFLNRTGIPINPRFSPGMSMSVPGSEKEF-F-AKV----KELMSSHQF---VVVLLPRKDVAIYNMVKRAADI 103 (388)
T ss_dssp HHHHHHHHHHHHTTCCBCSCCCCCEEEECCSSHHHH-H-HHH----HHHHHTCSE---EEEEESSSCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCEeCCCCCcceecCCCchHHHh-H-HHH----hhccCCCeE---EEEEECCCChhHHHHHHHHHhc
Confidence 46778889999988776443 222221122223333 1 000 000011222 2577774 4578999999 68
Q ss_pred eecceeeeccccccccCCch--hHHHHHHHHHhhcCCcccccc-------------------------------------
Q psy6533 155 QVGILTQCIKEKTVFKMNPA--TTGNILLKINAKLNGINHYVN------------------------------------- 195 (387)
Q Consensus 155 ~~GI~TQcv~~~tv~k~n~~--~~~ni~lKiN~KlGG~n~~l~------------------------------------- 195 (387)
..||+|||+..+++.+.+++ +++||++|||+||||+||.|.
T Consensus 104 ~~GI~TQcv~~~~~~k~~~q~s~~~NI~lKiN~KlGG~n~~l~~~~~~~~~~~tmiiG~DV~H~~~~~~g~~~~~~pSia 183 (388)
T 2yha_A 104 TFGVHTVCCVAEKFLSTKGQLGYFANVGLKVNLKFGGTNHNIKTPIPLLAKGKTMVVGYDVTHPTNLAAGQSPASAPSIV 183 (388)
T ss_dssp TTCCEEEEEEHHHHHCSTTHHHHHHHHHHHHHHHTTCBCCCCCSCCHHHHTSCEEEEEEEEECSCCCSSSSCCTTSCEEE
T ss_pred cCCCceEEEehhhhcCcCcHHHHHHHHHHHHHHHhCCcceeccccccccCCCCEEEEEEEEecccccCCCCcCCCCCEEE
Confidence 99999999999999888888 999999999999999998431
Q ss_pred -------------------------------------------------CCCCceEEEeccCCChhhHHHHHHHHHHHHH
Q psy6533 196 -------------------------------------------------KVKPVHIIFYRDGVSEGQFQAVMSAEISAIK 226 (387)
Q Consensus 196 -------------------------------------------------~~~P~~IIiYRdGvsegq~~~v~~~Ev~~I~ 226 (387)
|.+|++|||||||||||||.+|+++|+++|+
T Consensus 184 avVaS~d~~~~~y~~~~~~Q~~~~~E~i~~l~~~~~~~L~~~~~~~~~~~~~P~rIiiyRDGVseGQf~~V~~~El~~i~ 263 (388)
T 2yha_A 184 GLVSTIDQHLGQWPAMVWNNPHGQESMTEQFTDKFKTRLELWRSNPANNRSLPENILIFRDGVSEGQFQMVIKDELPLVR 263 (388)
T ss_dssp EEEECCSTTCCCCCEEEEEETTTHHHHHHHHHHHHHHHHHHHHHSGGGTTCCCSEEEEEEESCCGGGHHHHHHHTHHHHH
T ss_pred EEEEEcCCCCCEEEEEEEEcCCCcccHHHHHHHHHHHHHHHHHHhhhhcCCCCceEEEEecCcChhHHHHHHHHHHHHHH
Confidence 3589999999999999999999999999999
Q ss_pred HHHhhcccCC-CCcEEEEEEeeccccccccCCCCCCCCCCCCCCCcceecccccccCCCcceeeccccccccccCCceEE
Q psy6533 227 RACQGVEANY-NPKVTFLVVQKRHHTRFFPTSPSEGDGSRNNNVRPGTIVDTTITHPTDLDFYLVSHQSIQGTARPTKYY 305 (387)
Q Consensus 227 ~a~~~~~~~~-~Pkit~Ivv~Krh~~Rff~~~~~~~~~~~~~N~~pGTvVd~~it~~~~~dFyL~s~~~~qGTarPt~Y~ 305 (387)
+||.+++.++ .|+||||||+|| +|||||+
T Consensus 264 ~a~~~~~~~~~~P~it~Ivv~Kr--------------------------------------------------arPthY~ 293 (388)
T 2yha_A 264 AACKLVYPAGKLPRITLIVSVKG--------------------------------------------------SGSAHYT 293 (388)
T ss_dssp HHHHHHSCTTCCCEEEEEEEC--------------------------------------------------------CEE
T ss_pred HHHHHhhcccCCCcEEEEEeccc--------------------------------------------------cCCceEE
Confidence 9999998777 899999999998 9999999
Q ss_pred EEecCC------CCCHHHHHHHHHHhhhhccccCCCccCcchHHHHHHHHhhhhhhhcc
Q psy6533 306 RLWDEY------NLTDDETEEMTYYLCHLFSRCTRSVSYPAPTYYAHLAAFRGRVYIKN 358 (387)
Q Consensus 306 Vl~d~~------~~~~d~lq~lT~~Lc~~y~~~~~~vslPaP~~yA~~~a~R~~~~~~~ 358 (387)
||+||+ ++++|+||+|||+|||+|+||+++||||+|+||||++|+|||.||.+
T Consensus 294 Vl~De~f~~~~~~~~~d~lq~lty~Lc~~y~r~t~sVsipaP~yYAh~~a~R~r~~l~~ 352 (388)
T 2yha_A 294 VLVDEIFRADYGNKAADTLEQLTHDMCYLFGRATKAVSICPPAYYADLVCDRARIHQKE 352 (388)
T ss_dssp EEEESSHHHHHGGGHHHHHHHHHHHHHHC----------CHHHHHHHHHHHHHHHHCHH
T ss_pred EEeCCccccccCCCCHHHHHHHHHHHHHHhhcccCCCCcCcHHHHHHHHHHHHHHHhhh
Confidence 999998 99999999999999999999999999999999999999999999985
No 5
>1yvu_A Hypothetical protein AQ_1447; RNAse H fold, RNA binding protein, gene regulation; 2.90A {Aquifex aeolicus} SCOP: b.34.14.1 c.55.3.10 PDB: 2f8s_A 2f8t_A 2nub_A
Probab=100.00 E-value=7e-48 Score=412.27 Aligned_cols=243 Identities=16% Similarity=0.123 Sum_probs=191.9
Q ss_pred HHHHHHHHHHHhhhccCCCcEEEEEecccccccccCCCCCCCCCCCCCCCCCccccccccccCC--------Ccceeeee
Q psy6533 79 AEISAIKRACQGVEANYNPKVTFLVVQKRHHTRFFPTSPSEGDGSRNNNVRPGTIVDTTITHPT--------DLDFYLVS 150 (387)
Q Consensus 79 ~E~~~ik~a~~~~~~~~~Pk~t~Ivv~KrhhtRff~~~~~~~~~~~~~N~~pGTvVD~~Vt~P~--------~~dfY~~~ 150 (387)
..++.+.++|..+|....++........+. ...+..- ......+..|-. .+|+.|. ..++|..+
T Consensus 371 ~f~~~L~~~~~~~G~~i~~p~~~~~~~~~~-~~~~~~l----~~~~~~~~~~ql---vlvIlp~~~~~~~~~~~~~Y~~I 442 (706)
T 1yvu_A 371 EFLKELINFLKNKGIKLKIKGKSLILAQTR-EEAKEKL----IPVINKIKDVDL---VIVFLEEYPKVDPYKSFLLYDFV 442 (706)
T ss_dssp HHHHHHHHHHHTTTCEEEEEEEEEEECSST-THHHHHH----HHHHTTTSSCSE---EEEEEC----------CHHHHHH
T ss_pred HHHHHHHHHHHHcCceecCCccccccchhH-HHHHHHH----HHHhcccCCCcE---EEEEECCccccccccCccHHHHH
Confidence 567889999999887654432211111111 1111100 000000112222 2477775 57899999
Q ss_pred ec-eeeecceeeeccccccccC-CchhHHHHHHHHHhhcCCcccccc---------------------------------
Q psy6533 151 HQ-SIQVGILTQCIKEKTVFKM-NPATTGNILLKINAKLNGINHYVN--------------------------------- 195 (387)
Q Consensus 151 k~-~~~~GI~TQcv~~~tv~k~-n~~~~~ni~lKiN~KlGG~n~~l~--------------------------------- 195 (387)
|+ +...||+|||+..+++.+. +.+++.||++|||+||||+||.+.
T Consensus 443 K~~~~~~GI~TQcv~~~tl~~~~~~q~~~NI~lkiN~KLGG~nw~L~~~~~~~tmiIGiDVsH~~~~~~~pSv~g~vas~ 522 (706)
T 1yvu_A 443 KRELLKKMIPSQVILNRTLKNENLKFVLLNVAEQVLAKTGNIPYKLKEIEGKVDAFVGIDISRITRDGKTVNAVAFTKIF 522 (706)
T ss_dssp HHHHHHTTCCCEEEEHHHHHHSCHHHHHHHHHHHHHHHTTCCSCEESCCTTCCSEEEEECEEECCCSSSCCCEEEEEEEE
T ss_pred HHHHhcCCCceEEEehhhccccchHHHHHHHHHHHHHHhCCeeeeeccCCCCceEEEEEEEeccCCCCCCceEEEEEEEE
Confidence 99 7799999999999998775 579999999999999999999764
Q ss_pred -------------------------------------CCCCceEEEeccCCChhhHHHHHHHHHHHHHHHHhhcccCCCC
Q psy6533 196 -------------------------------------KVKPVHIIFYRDGVSEGQFQAVMSAEISAIKRACQGVEANYNP 238 (387)
Q Consensus 196 -------------------------------------~~~P~~IIiYRdGvsegq~~~v~~~Ev~~I~~a~~~~~~~~~P 238 (387)
+.+|++|||||||||| ++|+++|++||.+ |.|
T Consensus 523 d~~g~~~~~~~~~~~q~~~ei~~~l~~~~l~~~~~~~~~~P~rIIiyRDGVse-------~~El~~Ik~A~~~----~~p 591 (706)
T 1yvu_A 523 NSKGELVRYYLTSYPAFGEKLTEKAIGDVFSLLEKLGFKKGSKIVVHRDGRLY-------RDEVAAFKKYGEL----YGY 591 (706)
T ss_dssp CTTSCEEEEEEEEECSCTTHHHHHHHHHHHHHHHHTTCCTTCEEEEEESSCCC-------HHHHHHHHHHHHH----HTC
T ss_pred cCCCCEEEEEEEecccccchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCc-------HHHHHHHHHHHHH----cCC
Confidence 6899999999999999 7899999999987 469
Q ss_pred cEEEEEEeeccccccccCCCCCCCCCCCCCCCcceecccccccCCCcceeeccccc-cccccCCceEEEEecCCCCCHHH
Q psy6533 239 KVTFLVVQKRHHTRFFPTSPSEGDGSRNNNVRPGTIVDTTITHPTDLDFYLVSHQS-IQGTARPTKYYRLWDEYNLTDDE 317 (387)
Q Consensus 239 kit~Ivv~Krh~~Rff~~~~~~~~~~~~~N~~pGTvVd~~it~~~~~dFyL~s~~~-~qGTarPt~Y~Vl~d~~~~~~d~ 317 (387)
++|+|+|+||||+|||+. +||+||||||. ..+||||++|.+ .|||+||+||+|+++|. ++|+
T Consensus 592 kit~IvV~Krh~tRfF~~----------~np~pGTvVD~-----~~~~ffL~ss~~~~qGT~rPthY~vv~~D~--~~d~ 654 (706)
T 1yvu_A 592 SLELLEIIKRNNPRFFSN----------EKFIKGYFYKL-----SEDSVILATYNQVYEGTHQPIKVRKVYGEL--PVEV 654 (706)
T ss_dssp EEEEEEEECSSCCCEECS----------CSCCTTEEEEB-----SSSEEEECCSCCCSTTCCCCEEEEEEECSS--CHHH
T ss_pred cEEEEEEEeccCeeEECC----------CCCCCeEEEEc-----CCCeEEEEecCCccCCCCCCEEEEEEeCCC--CHHH
Confidence 999999999999999997 26999999994 357888877654 99999999999555554 9999
Q ss_pred HHHHHHHhhhhccccCCCccCcchHHHHHHHHhhhhhhhc
Q psy6533 318 TEEMTYYLCHLFSRCTRSVSYPAPTYYAHLAAFRGRVYIK 357 (387)
Q Consensus 318 lq~lT~~Lc~~y~~~~~~vslPaP~~yA~~~a~R~~~~~~ 357 (387)
||+|||+|||+|+||+++||+|+|+||||++|+||+.++.
T Consensus 655 Lq~lty~Lc~ly~r~t~svslPaPiyYAhllA~r~~~~~~ 694 (706)
T 1yvu_A 655 LCSQILSLTLMNYSSFQPIKLPATVHYSDKITKLMLRGIE 694 (706)
T ss_dssp HHHHHHHGGGGGCCSSSCCCSCTTTTTHHHHHHHHHTCSS
T ss_pred HHHHHHHHHHhccccCCCcccChHHHHHHHHHHHHHhcCC
Confidence 9999999999999999999999999999999999999886
No 6
>1u04_A Argonaute, hypothetical protein PF0537; RNAI, silencing, PIWI, PAZ, RISC, slicer, RNAse H hydrolase-gene regulation complex; 2.25A {Pyrococcus furiosus} SCOP: b.34.14.1 c.55.3.10 PDB: 1z25_A 1z26_A
Probab=100.00 E-value=6.4e-43 Score=375.03 Aligned_cols=190 Identities=21% Similarity=0.254 Sum_probs=168.7
Q ss_pred cccC-CCcceeeeeec-eeeecceeeeccccccccC----C-----chhHHHHHHHHHhhcCCcccccc-----------
Q psy6533 138 ITHP-TDLDFYLVSHQ-SIQVGILTQCIKEKTVFKM----N-----PATTGNILLKINAKLNGINHYVN----------- 195 (387)
Q Consensus 138 Vt~P-~~~dfY~~~k~-~~~~GI~TQcv~~~tv~k~----n-----~~~~~ni~lKiN~KlGG~n~~l~----------- 195 (387)
++.| ...|+|..+|+ .+..||+||||..+|+.+. + .+++.||++|||+||||+||.|+
T Consensus 479 ~l~~~~~~d~Y~~IK~~~~~~gIpTQcV~~~Tl~~~~~k~~~~~l~~sia~NIalqIn~KLGG~pW~L~~p~~~tmiIGi 558 (771)
T 1u04_A 479 AARNKLSSEKFEEIKRRLFNLNVISQVVNEDTLKNKRDKYDRNRLDLFVRHNLLFQVLSKLGVKYYVLDYRFNYDYIIGI 558 (771)
T ss_dssp EECTTSCHHHHHHHHHHHHHTTEEEEEEEHHHHHHCEETTEEEEECHHHHHHHHHHHHHHTTCBCCEESCCCSSSEEEEE
T ss_pred EEcCCCCcchHHHHHHHHhcCCcccEEEecccccCccccccccchhHHHHHHHHHHHHHHhCCcceeecCCCCCEEEEEE
Confidence 3334 35689999999 8889999999999998643 2 67899999999999999999874
Q ss_pred -----------------------------------------------------------CCCCceEEEeccCCChhhHHH
Q psy6533 196 -----------------------------------------------------------KVKPVHIIFYRDGVSEGQFQA 216 (387)
Q Consensus 196 -----------------------------------------------------------~~~P~~IIiYRdGvsegq~~~ 216 (387)
|.+|++|||||||+
T Consensus 559 DV~H~~~~~~svs~~A~V~s~dg~~~~~~s~~~~~~~~E~i~l~~~l~~~L~~y~~~n~~~lP~RIIiyRDG~------- 631 (771)
T 1u04_A 559 DVAPMKRSEGYIGGSAVMFDSQGYIRKIVPIKIGEQRGESVDMNEFFKEMVDKFKEFNIKLDNKKILLLRDGR------- 631 (771)
T ss_dssp EEEEECCTTTCEEEEEEEEETTSCEEEEEEEECCCCSSSSCCHHHHHHHHHHHHHHTTCCCTTCEEEEECSBC-------
T ss_pred EEEcCCCCCCceEEEEEEECCCCCEEEEEEEEeecCCccEEcHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCC-------
Confidence 66999999999996
Q ss_pred HHHHHHHHHHHHHhhcccCCCCcEEEEEEeeccccccccCCCCCCCCCCCCCCCcceecccccccCCCcceeecccc--c
Q psy6533 217 VMSAEISAIKRACQGVEANYNPKVTFLVVQKRHHTRFFPTSPSEGDGSRNNNVRPGTIVDTTITHPTDLDFYLVSHQ--S 294 (387)
Q Consensus 217 v~~~Ev~~I~~a~~~~~~~~~Pkit~Ivv~Krh~~Rff~~~~~~~~~~~~~N~~pGTvVd~~it~~~~~dFyL~s~~--~ 294 (387)
+.+.|+++|++||... .|+++||+|+||||+||| . + ++|||||+ . ||||+||. +
T Consensus 632 v~~~El~~i~ea~~~~----~p~itfIvV~Krh~tRfF-~-~----------~~pGTVV~-------~-DFyL~Sh~v~~ 687 (771)
T 1u04_A 632 ITNNEEEGLKYISEMF----DIEVVTMDVIKNHPVRAF-A-N----------MKMYFNLG-------G-AIYLIPHKLKQ 687 (771)
T ss_dssp CCHHHHHHHHHHHHHH----TCEEEEEEEESCCCCCBS-S-C----------SCEEEEET-------T-EEEEECSCCSS
T ss_pred CCHHHHHHHHHHHHhc----CCCEEEEEEEecCceeee-c-C----------CCCeeEEe-------C-CEEEEeccccC
Confidence 6789999999999875 489999999999999999 4 1 26899993 3 99999995 5
Q ss_pred cccccCCceE--EEEecCCCCC----HHHHHHHHHHhhhhccccCC-CccCcchHHHHHHHHhhhhhhhcc
Q psy6533 295 IQGTARPTKY--YRLWDEYNLT----DDETEEMTYYLCHLFSRCTR-SVSYPAPTYYAHLAAFRGRVYIKN 358 (387)
Q Consensus 295 ~qGTarPt~Y--~Vl~d~~~~~----~d~lq~lT~~Lc~~y~~~~~-~vslPaP~~yA~~~a~R~~~~~~~ 358 (387)
.|||++|+|| +|++|+++++ +|+||++||+|||+|+||++ ++|+||||||||++|++.+.+++.
T Consensus 688 ~qGTprPthY~~~Vi~D~~~~~~~~~~D~lq~lty~Lchlyyn~~~~svrvPAP~~YAhklA~lvgq~~~~ 758 (771)
T 1u04_A 688 AKGTPIPIKLAKKRIIKNGKVEKQSITRQDVLDIFILTRLNYGSISADMRLPAPVHYAHKFANAIRNEWKI 758 (771)
T ss_dssp SCSCCCCEEEEEEEEEETTEEEECCCCHHHHHHHHHHHTCCTTCSSCCCCSCHHHHHHHHHHHHHHTTCCC
T ss_pred CCCCCCCEEEEEEEEecCCCCCCCCCHHHHHHHHHHhhhhcccCCCCCccCCchHHHHHHHHHHHHhhhcc
Confidence 6999999999 9999999999 99999999999999999999 999999999999999998888754
No 7
>3ho1_A Argonaute; argonaute, protein-DNA-RNA complex, nucleic acid binding Pro RNA complex; 2.60A {Thermus thermophilus} PDB: 3dlb_A* 3dlh_A* 3f73_A* 3hm9_A 3hvr_A 3hxm_A* 3hk2_A 3hjf_A
Probab=100.00 E-value=4e-42 Score=363.78 Aligned_cols=233 Identities=17% Similarity=0.178 Sum_probs=179.3
Q ss_pred chHHHHHHHHHHHhhhccCCCcEEEEEecccccccc-cCCCCCCCCCCCCCCCCCccccccccccC-CCcceeeeeec-e
Q psy6533 77 TGAEISAIKRACQGVEANYNPKVTFLVVQKRHHTRF-FPTSPSEGDGSRNNNVRPGTIVDTTITHP-TDLDFYLVSHQ-S 153 (387)
Q Consensus 77 ~~~E~~~ik~a~~~~~~~~~Pk~t~Ivv~KrhhtRf-f~~~~~~~~~~~~~N~~pGTvVD~~Vt~P-~~~dfY~~~k~-~ 153 (387)
....++.+.++|..+|..... .........+. |... -.....+|+.+ .+|+.| ...++|..+|+ +
T Consensus 358 ~~~f~~~L~~va~~~G~~i~~----~~~~~~~~d~~~~~~~-------l~~~~~~~~ql-vvvIlp~~~~~~y~~IKk~~ 425 (685)
T 3ho1_A 358 PEFLRRALLRAFGASGASLRL----HTLHAHPSQGLAFREA-------LRKAKEEGVQA-VLVLTPPMAWEDRNRLKALL 425 (685)
T ss_dssp CHHHHHHHHHHHHSSSSCEEE----EECCCCGGGTHHHHHH-------HHHHHHTTCCE-EEEEESCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCcEecc----ceeecCCCchHHHHHH-------HHHhhhcCCCE-EEEEECCCCccHHHHHHHHH
Confidence 346788999999988764432 12111111110 1000 00112234333 346777 56778999999 8
Q ss_pred eeecceeeeccccccccCCchhHHHHHHHHHhhcCCcccccc--------------------------------------
Q psy6533 154 IQVGILTQCIKEKTVFKMNPATTGNILLKINAKLNGINHYVN-------------------------------------- 195 (387)
Q Consensus 154 ~~~GI~TQcv~~~tv~k~n~~~~~ni~lKiN~KlGG~n~~l~-------------------------------------- 195 (387)
+..||+||||. .++.+.+.++++||++|||+||||+||.|.
T Consensus 426 ~~~GIpTQcV~-~tl~k~~~~ia~NIaLkINaKLGG~pW~L~~P~~~tmiIGiDVsH~~~~~~~~~aav~~~dg~~~~~~ 504 (685)
T 3ho1_A 426 LREGLPSQILN-VPLREEERHRWENALLGLLAKAGLQVVALSGAYPAELAVGFDAGGRESFRFGGAACAVGGDGGHLLWT 504 (685)
T ss_dssp HHTTCCEEEEE-SSCCTTCHHHHHHHHHHHHHHHTCCCCEECSCCSCSEEEEEEEEETTEEEEEEEEEEECC--CCCEEE
T ss_pred hcCCCccEEEe-cccccccHhHHHHHHHHHHHHhCCeeEEecCCCCCeEEEEEEEEcCCCCccceEEEEEECCCCEEEeE
Confidence 89999999999 777666788999999999999999999875
Q ss_pred ------------------------------CCCCceEEEeccCC-ChhhHHHHHHHHHHHHHHHHhhcccCCCCcEEEEE
Q psy6533 196 ------------------------------KVKPVHIIFYRDGV-SEGQFQAVMSAEISAIKRACQGVEANYNPKVTFLV 244 (387)
Q Consensus 196 ------------------------------~~~P~~IIiYRdGv-segq~~~v~~~Ev~~I~~a~~~~~~~~~Pkit~Iv 244 (387)
|.+|++|||||||| +|+|+. +|++||.+++ |+++||+
T Consensus 505 ~~~~Q~~e~l~~~~L~~~l~eaL~~Y~k~ng~lP~RIIIyRDGV~se~E~~--------~I~eAl~~~~----~~~t~Iv 572 (685)
T 3ho1_A 505 LPEAQAGERIPQEVVWDLLEETLWAFRRKAGRLPSRVLLLRNGRVPQDEFA--------LALEALAREG----IAYDLVS 572 (685)
T ss_dssp CCCCCCSCCCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEEECSSSCSGGGH--------HHHHHHHHTT----CEEEEEE
T ss_pred EEEccCCcEecHHHHHHHHHHHHHHHHHHhCCCCcEEEEEeCCCCCHHHHH--------HHHHHHHhcC----CCEEEEE
Confidence 89999999999999 787665 5677888764 7899999
Q ss_pred EeeccccccccCCCCCCCCCCCCCCCcceecccccccCCCcceeeccc-cccccccCCceEEEEecCCCCCHHHHHHHHH
Q psy6533 245 VQKRHHTRFFPTSPSEGDGSRNNNVRPGTIVDTTITHPTDLDFYLVSH-QSIQGTARPTKYYRLWDEYNLTDDETEEMTY 323 (387)
Q Consensus 245 v~Krh~~Rff~~~~~~~~~~~~~N~~pGTvVd~~it~~~~~dFyL~s~-~~~qGTarPt~Y~Vl~d~~~~~~d~lq~lT~ 323 (387)
|+||||+|||+. + .+|.+||+++ +..++|||++| .+.+||++|+||+ +|++++++|+||++||
T Consensus 573 VqKRh~tRfF~~-n--------~pp~~Gt~v~-----~e~d~flL~s~gsv~qGT~rPthy~--~D~~~~s~D~LQ~ltY 636 (685)
T 3ho1_A 573 VRKSGGGRVYPV-Q--------GRLADGLYVP-----LEDKTFLLLTVHRDFRGTPRPLKLV--HEAGDTPLEALAHQIF 636 (685)
T ss_dssp EESSCCCCEEES-S--------SCCCSSEEEE-----CSTTEEEEECCCCCSSSCCCCEEEE--EEEECSCHHHHHHHHH
T ss_pred EEecCCceEecC-C--------CCCCCeEEEe-----CCCCEEEEEecCCCCccCCceEEEE--ECCCCCCHHHHHHHHH
Confidence 999999999997 1 3567777773 23444555444 4689999999998 8999999999999999
Q ss_pred HhhhhccccC-CCccCcchHHHHHHHHh
Q psy6533 324 YLCHLFSRCT-RSVSYPAPTYYAHLAAF 350 (387)
Q Consensus 324 ~Lc~~y~~~~-~~vslPaP~~yA~~~a~ 350 (387)
+|||+|+||+ +++|+||||||||++|+
T Consensus 637 ~Lchmy~nst~~svsvPAP~~YAhklAk 664 (685)
T 3ho1_A 637 HLTRLYPASGFAFPRLPAPLHLADRLVK 664 (685)
T ss_dssp HGGGCCSSCSSSCCSSCHHHHHHHHHHH
T ss_pred HHHHhhccCCCCCCCcChHHHHHHHHHH
Confidence 9999999998 99999999999999994
No 8
>2w42_A PIWI, putative uncharacterized protein; RNAI, RISC, argonaute, PIWI domain, protein/DNA complex; 1.90A {Archaeoglobus fulgidus} PDB: 1ytu_A 2bgg_A 1w9h_A
Probab=100.00 E-value=5.7e-38 Score=319.50 Aligned_cols=203 Identities=18% Similarity=0.138 Sum_probs=158.1
Q ss_pred CCCc-ceeeeeec-eeeecceeeeccccccccCCc-hhHHHHHHHHHhhcCCcccccc----------------------
Q psy6533 141 PTDL-DFYLVSHQ-SIQVGILTQCIKEKTVFKMNP-ATTGNILLKINAKLNGINHYVN---------------------- 195 (387)
Q Consensus 141 P~~~-dfY~~~k~-~~~~GI~TQcv~~~tv~k~n~-~~~~ni~lKiN~KlGG~n~~l~---------------------- 195 (387)
|... +.|. +|. .++.||+||||..+|+.+.+. +++.||++|||+||||++|.|.
T Consensus 116 ~~~~~~~y~-~K~~~~~~gvptQ~I~~~tl~~~~~~~~~~nIalqi~~KlGG~pW~l~~~~~~~~~miiGidv~h~~~~~ 194 (427)
T 2w42_A 116 PEYNTPLYY-KLKSYLINSIPSQFMRYDILSNRNLTFYVDNLLVQFVSKLGGKPWILNVDPEKGSDIIIGTGATRIDNVN 194 (427)
T ss_dssp SSCCHHHHH-HHHHHHHTTSCEEEEEGGGCCTTTHHHHHHHHHHHHHHHTTCBCCEECCCTTSSCSEEEEEEEEESSSSE
T ss_pred CCCCcchHH-HHHHHhCCCcCcEEEEhhhcccccchhHHHHHHHHHHHHhCCcceecccCCCCCCeEEEEEEEEEcCCCc
Confidence 5433 4554 577 788999999999999986664 4588999999999999999764
Q ss_pred ------------------------------------------------CCCCc--eEEEeccCCChhhHHHHHHHHHHHH
Q psy6533 196 ------------------------------------------------KVKPV--HIIFYRDGVSEGQFQAVMSAEISAI 225 (387)
Q Consensus 196 ------------------------------------------------~~~P~--~IIiYRdGvsegq~~~v~~~Ev~~I 225 (387)
+.+|+ +|||| ||+..+.+.|+++|
T Consensus 195 v~g~a~v~~~~g~~~~~~~~~~~~~~E~~~~l~~~l~~aL~~y~~~~~~~~P~~~rIii~------gq~~~v~~~Ei~~i 268 (427)
T 2w42_A 195 LFCFAMVFKKDGTMLWNEISPIVTSSEYLTYLKSTIKKVVYGFKKSNPDWDVEKLTLHVS------GKRPKMKDGETKIL 268 (427)
T ss_dssp EEEEEEEECTTSCEEEEEECCCEEGGGHHHHHHHHHHHHHHHHHHHCTTCCCSEEEEEEE------SSCCSCHHHHHHHH
T ss_pred EEEEEEEEcCCCCEEEEEEEecCChhHHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEE------eecccccHHHHHHH
Confidence 35787 66887 88888999999999
Q ss_pred HHHHhhccc----CCCCcEEEEEEeeccc-cccccCCCCCCCCCCCCCCCcceecccccccCCCcceeecccc------c
Q psy6533 226 KRACQGVEA----NYNPKVTFLVVQKRHH-TRFFPTSPSEGDGSRNNNVRPGTIVDTTITHPTDLDFYLVSHQ------S 294 (387)
Q Consensus 226 ~~a~~~~~~----~~~Pkit~Ivv~Krh~-~Rff~~~~~~~~~~~~~N~~pGTvVd~~it~~~~~dFyL~s~~------~ 294 (387)
++||.+++. ++.|+++||+|+|||| .|+|.. + ..+||+||||||.+ .+...+|++.++. .
T Consensus 269 ~~a~~~~~~~~~~~~~~~l~~IvV~Kr~~~~r~f~~-~------~~~nP~~GTvVd~~--~~~~l~~~~g~q~~~~~~~~ 339 (427)
T 2w42_A 269 KETVEELKKQEMVSRDVKYAILHLNETHPFWVMGDP-N------NRFHPYEGTKVKLS--SKRYLLTLLQPYLKRNGLEM 339 (427)
T ss_dssp HHHHHHHHHTTSSCTTCEEEEEEEEECCCEEEEC---------------CCSEEEESS--SSEEEEEEEC---------C
T ss_pred HHHHHHhccccccCCCCCEEEEEEEccccceeeecC-C------CCCCCCCceEEEcC--CCeEEEEEEeeecccccccc
Confidence 999999875 7899999999999999 888875 1 23599999999974 3333444444443 2
Q ss_pred cccccCCceEEEEec----CCCC-CHHHHHHHHHHhhhhccccCCCccCcchHHHHHHHHhhhhhhhcccC
Q psy6533 295 IQGTARPTKYYRLWD----EYNL-TDDETEEMTYYLCHLFSRCTRSVSYPAPTYYAHLAAFRGRVYIKNRH 360 (387)
Q Consensus 295 ~qGTarPt~Y~Vl~d----~~~~-~~d~lq~lT~~Lc~~y~~~~~~vslPaP~~yA~~~a~R~~~~~~~~~ 360 (387)
.+ +++||||+|++| ++.+ +.|+||++||+|||+|.|++.++++||||||||++|+++..+-+-..
T Consensus 340 ~~-~~~Pt~y~vi~d~~~~~~~~~~~d~lq~lty~L~~~nw~~t~~v~vPap~~YAhklA~l~~~~~~~~~ 409 (427)
T 2w42_A 340 VT-PIKPLSVEIVSDNWTSEEYYHNVHEILDEIYYLSKMNWRGFRSRNLPVTVNYPKLVAGIIANVNRYGG 409 (427)
T ss_dssp EE-EEEEEEEEEEEECCCTTTHHHHHHHHHHHHHHHHTCCTTSSSCCSSCHHHHHHHHHHHHHHHHHHTTC
T ss_pred cc-CCCCEEEEEEecCCcCcccCCCHHHHHHHHHHhhCcccCCCCCCCcCcchHhHHHHHHHHhhhhhcCC
Confidence 22 233999999995 4455 58999999999999999999999999999999999999988765433
No 9
>2yhb_A QDE-2, post-transcriptional gene silencing protein QDE-2; RNA binding protein, argonaute, miRNA, siRNA; 3.65A {Neurospora crassa}
Probab=99.97 E-value=3e-31 Score=270.53 Aligned_cols=122 Identities=36% Similarity=0.592 Sum_probs=71.5
Q ss_pred hhhhhhHHHHHHHHHHHHHHHH---hcCCCCeeEEEeeccCChhHHHHHHHhcCCCCCcccccccccccchHHHHHHHHH
Q psy6533 11 KKKKKKEEEEKKQKKQKKKKKK---VNKVKPVHIIFYRDGVSEGQFQAVMRRCGPCSNRSVAGLSYTIFTGAEISAIKRA 87 (387)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~---~n~~~P~~Ii~yRDGVsegq~~~v~~~~~~~~~~~~~~~~y~~~~~~E~~~ik~a 87 (387)
.+.|.+++|+..+++.|+.|++ .++.+|++|||||||||||||.+|++ .|+.+|++|
T Consensus 206 ~~~E~i~~l~~~~~~~L~~~~~~~~~~~~~P~rIiiyRDGVseGqf~~V~~--------------------~El~~i~~a 265 (437)
T 2yhb_A 206 GQESMTEQFTDKFKTRLELWRSNPANNRSLPENILIFRDGVSEGQFQMVIK--------------------DELPLVRAA 265 (437)
T ss_dssp THHHHHHHHHHHHHHHHHHHHTCGGGTTCCCSEEEEEEESCCTTTHHHHHH--------------------HTHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHHHHhhhhhcCCCCceEEEEeCCcchHHHHHHHH--------------------HHHHHHHHH
Confidence 5788999999999999999999 89999999999999999999999997 799999999
Q ss_pred HHhhhccC-CCcEEEEEecccccccccCCCCCCCCCCCCCCCCCccccccccccCCCcceeeeeece
Q psy6533 88 CQGVEANY-NPKVTFLVVQKRHHTRFFPTSPSEGDGSRNNNVRPGTIVDTTITHPTDLDFYLVSHQS 153 (387)
Q Consensus 88 ~~~~~~~~-~Pk~t~Ivv~KrhhtRff~~~~~~~~~~~~~N~~pGTvVD~~Vt~P~~~dfY~~~k~~ 153 (387)
|..++..+ +|++|||||+||||||||+.+..+.+ ++.+|++|||+||+.||+|..+||||++|..
T Consensus 266 ~~~~~~~~~~p~it~Ivv~Krh~tRff~~~~~~~~-~~~~N~~pGTvVD~~it~p~~~dFyL~Sh~~ 331 (437)
T 2yhb_A 266 CKLVYPAGKLPRITLIVSVKRHQTRFFPTDPKHIH-FKSKSPKEGTVVDRGVTNVRYWDFFLQAHAS 331 (437)
T ss_dssp HHHHSCTTCCCEEEEEEEC------------------------------------------------
T ss_pred HHHhhcccCCCCEEEEEEEecccceeccCCccccc-cccCCCCCceEecccccCCCCceEEEEeccc
Confidence 99998777 89999999999999999997654433 2578999999999999999999999999983
No 10
>4f3t_A Protein argonaute-2; hydrolase/gene regulation, RNAI, slicer, hydrolase-RNA; 2.25A {Homo sapiens} PDB: 4ei1_A 4ei3_A* 1r4k_A 1si2_A 1si3_A
Probab=99.96 E-value=1e-29 Score=277.93 Aligned_cols=153 Identities=38% Similarity=0.620 Sum_probs=126.5
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHhcCCCCeeEEEeeccCChhHHHHHHHhcCCCCCcccccccccccchHHHHHHHHHHH
Q psy6533 10 KKKKKKKEEEEKKQKKQKKKKKKVNKVKPVHIIFYRDGVSEGQFQAVMRRCGPCSNRSVAGLSYTIFTGAEISAIKRACQ 89 (387)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~n~~~P~~Ii~yRDGVsegq~~~v~~~~~~~~~~~~~~~~y~~~~~~E~~~ik~a~~ 89 (387)
..+.|.+++|+..+++.|+.|++.|+.+|++|||||||||||||++|++ .|+.+|++||.
T Consensus 635 ~~~~E~i~~l~~~~~~~L~~~~~~~~~~P~~IiiyRDGVsegq~~~v~~--------------------~Ev~~i~~a~~ 694 (861)
T 4f3t_A 635 QHRQEIIQDLAAMVRELLIQFYKSTRFKPTRIIFYRDGVSEGQFQQVLH--------------------HELLAIREACI 694 (861)
T ss_dssp STTCCSCTTHHHHHHHHHHHHHHHHSCCCSEEEEEEESCCGGGHHHHHH--------------------HHHHHHHHHHH
T ss_pred CCCccHHHHHHHHHHHHHHHHHHHhCCCCceEEEEecCCChHHHHHHHH--------------------HHHHHHHHHHH
Confidence 4567899999999999999999999999999999999999999999997 79999999999
Q ss_pred hhhccCCCcEEEEEecccccccccCCCCCCCCCCCCCCCCCccccccccccCCCcceeeeeecee---eecceeeecccc
Q psy6533 90 GVEANYNPKVTFLVVQKRHHTRFFPTSPSEGDGSRNNNVRPGTIVDTTITHPTDLDFYLVSHQSI---QVGILTQCIKEK 166 (387)
Q Consensus 90 ~~~~~~~Pk~t~Ivv~KrhhtRff~~~~~~~~~~~~~N~~pGTvVD~~Vt~P~~~dfY~~~k~~~---~~GI~TQcv~~~ 166 (387)
.++.+|+|++|||||+||||||||+.+..+. .++.+|++|||+||+.||+|..+||||++|... ..+....++...
T Consensus 695 ~~~~~~~P~it~Ivv~Krh~tRff~~~~~~~-~~~~~N~~pGTvVD~~it~p~~~dFyL~Sh~~~qGTarPthY~Vl~d~ 773 (861)
T 4f3t_A 695 KLEKDYQPGITFIVVQKRHHTRLFCTDKNER-VGKSGNIPAGTTVDTKITHPTEFDFYLCSHAGIQGTSRPSHYHVLWDD 773 (861)
T ss_dssp HHCTTCCCEEEEEEEECCSCCCEEESSGGGC-BTTTTBCCTTEEECSSSSCSSBCEEEEECSCCCSSCCCCEEEEEEEET
T ss_pred HhccCCCCcEEEEEEEccccceeeecCCccc-ccccCCCCCceeccCccccCCCCEEEEEEEecccccccCceEEEEeCC
Confidence 9988999999999999999999999764332 246799999999999999999999999999833 233333344443
Q ss_pred ccccCCchhHHHHHHHHHh
Q psy6533 167 TVFKMNPATTGNILLKINA 185 (387)
Q Consensus 167 tv~k~n~~~~~ni~lKiN~ 185 (387)
+ ...+..+..+..+++.
T Consensus 774 ~--~~~~d~lq~lty~Lc~ 790 (861)
T 4f3t_A 774 N--RFSSDELQILTYQLCH 790 (861)
T ss_dssp T--CCCHHHHHHHHHHHTT
T ss_pred C--CCCHHHHHHHHHHHhh
Confidence 3 1244555556655553
No 11
>4f1n_A Kpago; argonaute, RNAI, RNAse H, RNA binding protein-RNA complex; 3.19A {Vanderwaltozyma polyspora}
Probab=99.95 E-value=1.2e-28 Score=271.69 Aligned_cols=151 Identities=28% Similarity=0.465 Sum_probs=121.3
Q ss_pred hhhhhHHHHHHHHHHHHHHHHh-cCCCCeeEEEeeccCChhHHHHHHHhcCCCCCcccccccccccchHHHHHHHHHHHh
Q psy6533 12 KKKKKEEEEKKQKKQKKKKKKV-NKVKPVHIIFYRDGVSEGQFQAVMRRCGPCSNRSVAGLSYTIFTGAEISAIKRACQG 90 (387)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~-n~~~P~~Ii~yRDGVsegq~~~v~~~~~~~~~~~~~~~~y~~~~~~E~~~ik~a~~~ 90 (387)
+.|.+++|+..++++|+.|++. |+.+|++|||||||||||||++|++ .|+.+|++||..
T Consensus 806 ~~Eii~~L~~~~~~~L~~y~~~n~~~lP~~IIiYRDGVSEGQf~~Vl~--------------------~Ev~~Ik~a~~~ 865 (1046)
T 4f1n_A 806 GEEIITNVGSLMLNRLKIYQKHNNGKLPTKIMYFRDGVSVDQFSQVVK--------------------IEVKSIKESVRK 865 (1046)
T ss_dssp TCCSCTTGGGGHHHHHHHHHHTTTTCCCSSEEEEEESCCGGGHHHHHH--------------------THHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEEecCCchHHHHHHHH--------------------HHHHHHHHHHHH
Confidence 6789999999999999999998 8999999999999999999999997 799999999998
Q ss_pred hh------ccCCCcEEEEEecccccccccCCCCCCCC--CC-----CCCCCCCccccccccccCCCcceeeeeecee---
Q psy6533 91 VE------ANYNPKVTFLVVQKRHHTRFFPTSPSEGD--GS-----RNNNVRPGTIVDTTITHPTDLDFYLVSHQSI--- 154 (387)
Q Consensus 91 ~~------~~~~Pk~t~Ivv~KrhhtRff~~~~~~~~--~~-----~~~N~~pGTvVD~~Vt~P~~~dfY~~~k~~~--- 154 (387)
++ .+|+|+||||||+||||||||+.+.++.+ +. ..+|++||||||+.||+|..+||||++|..+
T Consensus 866 ~~~~~~~~~~y~Pkit~IVV~KRhhtRfF~~~~~~~d~~g~~~~~~~~~N~~pGTVVD~~It~p~~~DFyL~Sh~~~qGT 945 (1046)
T 4f1n_A 866 FGPQLNGGNKYDPPVTCIATVKRNQVRFIPIQENAKNEKGEEVAVQSMGNVMPGTVVDRGITSVAHFDFFIQSHQALKGT 945 (1046)
T ss_dssp HTHHHHTSCCCCCCEEEEEEECSCSCCEEECCSEEECTTSCEEECEETTEECTTEEECSSSSCSSBEEEEEECSCCCSSS
T ss_pred hhhhcccccCCCCCEEEEEEecCccceeeeccccccccccccccccccCCCCCCcEeeccccccCcceEEEEccccCCCc
Confidence 75 47899999999999999999996533211 11 2689999999999999999999999999833
Q ss_pred eecceeeeccccccccCCchhHHHHHHHHH
Q psy6533 155 QVGILTQCIKEKTVFKMNPATTGNILLKIN 184 (387)
Q Consensus 155 ~~GI~TQcv~~~tv~k~n~~~~~ni~lKiN 184 (387)
...+...++...+ ......+..+..+++
T Consensus 946 arPthY~VL~De~--~~~~d~lQ~LTy~LC 973 (1046)
T 4f1n_A 946 GVPCHYWCLYDEN--QSTSDYLQEICNNLC 973 (1046)
T ss_dssp CCCEEEEEEEESS--CCCHHHHHHHHHHTT
T ss_pred ccCcEEEEEeCCC--CCCHHHHHHHHHHHh
Confidence 3333334444433 123444555555444
No 12
>2yha_A Post-transcriptional gene silencing protein QDE-2; RNA binding protein, argonaute, miRNA, siRNA; HET: GOL; 1.85A {Neurospora crassa} PDB: 2xdy_A
Probab=99.69 E-value=4.5e-17 Score=163.71 Aligned_cols=77 Identities=32% Similarity=0.503 Sum_probs=71.4
Q ss_pred hhhhhhHHHHHHHHHHHHHHHH---hcCCCCeeEEEeeccCChhHHHHHHHhcCCCCCcccccccccccchHHHHHHHHH
Q psy6533 11 KKKKKKEEEEKKQKKQKKKKKK---VNKVKPVHIIFYRDGVSEGQFQAVMRRCGPCSNRSVAGLSYTIFTGAEISAIKRA 87 (387)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~---~n~~~P~~Ii~yRDGVsegq~~~v~~~~~~~~~~~~~~~~y~~~~~~E~~~ik~a 87 (387)
.++|.+++|+..+++.|+.|++ .|+.+|++|||||||||||||.+|++ .|+.+|++|
T Consensus 206 ~~~E~i~~l~~~~~~~L~~~~~~~~~~~~~P~rIiiyRDGVseGQf~~V~~--------------------~El~~i~~a 265 (388)
T 2yha_A 206 GQESMTEQFTDKFKTRLELWRSNPANNRSLPENILIFRDGVSEGQFQMVIK--------------------DELPLVRAA 265 (388)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHSGGGTTCCCSEEEEEEESCCGGGHHHHHH--------------------HTHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHHHHHHhhhhcCCCCceEEEEecCcChhHHHHHHH--------------------HHHHHHHHH
Confidence 5778999999999999999999 89999999999999999999999997 799999999
Q ss_pred HHhhhccC-CCcEEEEEeccc
Q psy6533 88 CQGVEANY-NPKVTFLVVQKR 107 (387)
Q Consensus 88 ~~~~~~~~-~Pk~t~Ivv~Kr 107 (387)
|..++..+ +|++|||||+||
T Consensus 266 ~~~~~~~~~~P~it~Ivv~Kr 286 (388)
T 2yha_A 266 CKLVYPAGKLPRITLIVSVKG 286 (388)
T ss_dssp HHHHSCTTCCCEEEEEEEC--
T ss_pred HHHhhcccCCCcEEEEEeccc
Confidence 99998777 899999999999
No 13
>1yvu_A Hypothetical protein AQ_1447; RNAse H fold, RNA binding protein, gene regulation; 2.90A {Aquifex aeolicus} SCOP: b.34.14.1 c.55.3.10 PDB: 2f8s_A 2f8t_A 2nub_A
Probab=99.67 E-value=1.4e-16 Score=170.59 Aligned_cols=93 Identities=23% Similarity=0.272 Sum_probs=76.3
Q ss_pred hhhhhHHHHHHHHHHHHHHHHhcCCCCeeEEEeeccCChhHHHHHHHhcCCCCCcccccccccccchHHHHHHHHHHHhh
Q psy6533 12 KKKKKEEEEKKQKKQKKKKKKVNKVKPVHIIFYRDGVSEGQFQAVMRRCGPCSNRSVAGLSYTIFTGAEISAIKRACQGV 91 (387)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~n~~~P~~Ii~yRDGVsegq~~~v~~~~~~~~~~~~~~~~y~~~~~~E~~~ik~a~~~~ 91 (387)
+++.++++ +...++.|++.++.+|++|||||||||| + .|+++|++||..
T Consensus 540 ~~ei~~~l---~~~~l~~~~~~~~~~P~rIIiyRDGVse-------~--------------------~El~~Ik~A~~~- 588 (706)
T 1yvu_A 540 GEKLTEKA---IGDVFSLLEKLGFKKGSKIVVHRDGRLY-------R--------------------DEVAAFKKYGEL- 588 (706)
T ss_dssp TTHHHHHH---HHHHHHHHHHTTCCTTCEEEEEESSCCC-------H--------------------HHHHHHHHHHHH-
T ss_pred cchHHHHH---HHHHHHHHHHhcCCCCcEEEEEeCCCCc-------H--------------------HHHHHHHHHHHH-
Confidence 33444443 4556777888889999999999999999 3 699999999986
Q ss_pred hccCCCcEEEEEecccccccccCCCCCCCCCCCCCCCCCccccccccccCCCcceeeeeece
Q psy6533 92 EANYNPKVTFLVVQKRHHTRFFPTSPSEGDGSRNNNVRPGTIVDTTITHPTDLDFYLVSHQS 153 (387)
Q Consensus 92 ~~~~~Pk~t~Ivv~KrhhtRff~~~~~~~~~~~~~N~~pGTvVD~~Vt~P~~~dfY~~~k~~ 153 (387)
|+|++|+|||+||||+|||+. +||+|||+||. ..++||+.+|..
T Consensus 589 ---~~pkit~IvV~Krh~tRfF~~----------~np~pGTvVD~-----~~~~ffL~ss~~ 632 (706)
T 1yvu_A 589 ---YGYSLELLEIIKRNNPRFFSN----------EKFIKGYFYKL-----SEDSVILATYNQ 632 (706)
T ss_dssp ---HTCEEEEEEEECSSCCCEECS----------CSCCTTEEEEB-----SSSEEEECCSCC
T ss_pred ---cCCcEEEEEEEeccCeeEECC----------CCCCCeEEEEc-----CCCeEEEEecCC
Confidence 579999999999999999984 26999999993 457888888773
No 14
>3ho1_A Argonaute; argonaute, protein-DNA-RNA complex, nucleic acid binding Pro RNA complex; 2.60A {Thermus thermophilus} PDB: 3dlb_A* 3dlh_A* 3f73_A* 3hm9_A 3hvr_A 3hxm_A* 3hk2_A 3hjf_A
Probab=99.53 E-value=1.5e-14 Score=153.47 Aligned_cols=123 Identities=12% Similarity=0.135 Sum_probs=83.6
Q ss_pred hhHHHHHHHHHHHHHHHHhcCCCCeeEEEeeccC-ChhHHHHHHHhcCCCCCcccccccccccchHHHHHHHHHHHhhhc
Q psy6533 15 KKEEEEKKQKKQKKKKKKVNKVKPVHIIFYRDGV-SEGQFQAVMRRCGPCSNRSVAGLSYTIFTGAEISAIKRACQGVEA 93 (387)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~n~~~P~~Ii~yRDGV-segq~~~v~~~~~~~~~~~~~~~~y~~~~~~E~~~ik~a~~~~~~ 93 (387)
.++++...++++|+.|++.|+.+|++|||||||| ||||+.+|+ +||..+
T Consensus 515 ~~~~L~~~l~eaL~~Y~k~ng~lP~RIIIyRDGV~se~E~~~I~----------------------------eAl~~~-- 564 (685)
T 3ho1_A 515 PQEVVWDLLEETLWAFRRKAGRLPSRVLLLRNGRVPQDEFALAL----------------------------EALARE-- 564 (685)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSCCSEEEEEECSSSCSGGGHHHH----------------------------HHHHHT--
T ss_pred cHHHHHHHHHHHHHHHHHHhCCCCcEEEEEeCCCCCHHHHHHHH----------------------------HHHHhc--
Confidence 3568999999999999999999999999999999 899887665 344443
Q ss_pred cCCCcEEEEEecccccccccCCCCCCCCCCCCCCCCCccccccccccCCCcceeeeeec-eeeecceeeeccccccccCC
Q psy6533 94 NYNPKVTFLVVQKRHHTRFFPTSPSEGDGSRNNNVRPGTIVDTTITHPTDLDFYLVSHQ-SIQVGILTQCIKEKTVFKMN 172 (387)
Q Consensus 94 ~~~Pk~t~Ivv~KrhhtRff~~~~~~~~~~~~~N~~pGTvVD~~Vt~P~~~dfY~~~k~-~~~~GI~TQcv~~~tv~k~n 172 (387)
.+++|||+|+||||+|||+.+ .++.+||++ |..+++|+.++. ....|+++............
T Consensus 565 --~~~~t~IvVqKRh~tRfF~~n---------~pp~~Gt~v------~~e~d~flL~s~gsv~qGT~rPthy~~D~~~~s 627 (685)
T 3ho1_A 565 --GIAYDLVSVRKSGGGRVYPVQ---------GRLADGLYV------PLEDKTFLLLTVHRDFRGTPRPLKLVHEAGDTP 627 (685)
T ss_dssp --TCEEEEEEEESSCCCCEEESS---------SCCCSSEEE------ECSTTEEEEECCCCCSSSCCCCEEEEEEEECSC
T ss_pred --CCCEEEEEEEecCCceEecCC---------CCCCCeEEE------eCCCCEEEEEecCCCCccCCceEEEEECCCCCC
Confidence 378999999999999999942 244555544 433555555554 34456644432221111124
Q ss_pred chhHHHHHHHHH
Q psy6533 173 PATTGNILLKIN 184 (387)
Q Consensus 173 ~~~~~ni~lKiN 184 (387)
+..+..++.+++
T Consensus 628 ~D~LQ~ltY~Lc 639 (685)
T 3ho1_A 628 LEALAHQIFHLT 639 (685)
T ss_dssp HHHHHHHHHHGG
T ss_pred HHHHHHHHHHHH
Confidence 445555555543
No 15
>2w42_A PIWI, putative uncharacterized protein; RNAI, RISC, argonaute, PIWI domain, protein/DNA complex; 1.90A {Archaeoglobus fulgidus} PDB: 1ytu_A 2bgg_A 1w9h_A
Probab=99.41 E-value=2.2e-13 Score=138.44 Aligned_cols=92 Identities=14% Similarity=0.042 Sum_probs=76.2
Q ss_pred hhhhhHHHHHHHHHHHHHHHH-hcCCCCe--eEEEeeccCChhHHHHHHHhcCCCCCcccccccccccchHHHHHHHHHH
Q psy6533 12 KKKKKEEEEKKQKKQKKKKKK-VNKVKPV--HIIFYRDGVSEGQFQAVMRRCGPCSNRSVAGLSYTIFTGAEISAIKRAC 88 (387)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~-~n~~~P~--~Ii~yRDGVsegq~~~v~~~~~~~~~~~~~~~~y~~~~~~E~~~ik~a~ 88 (387)
.+|.+++|...++++|++|++ .|+.+|+ +|||| ||+.+|.+ .|+++|++||
T Consensus 219 ~~E~~~~l~~~l~~aL~~y~~~~~~~~P~~~rIii~------gq~~~v~~--------------------~Ei~~i~~a~ 272 (427)
T 2w42_A 219 SSEYLTYLKSTIKKVVYGFKKSNPDWDVEKLTLHVS------GKRPKMKD--------------------GETKILKETV 272 (427)
T ss_dssp GGGHHHHHHHHHHHHHHHHHHHCTTCCCSEEEEEEE------SSCCSCHH--------------------HHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEE------eecccccH--------------------HHHHHHHHHH
Confidence 456799999999999999999 9999998 66887 88888876 7999999999
Q ss_pred Hhhhc----cCCCcEEEEEeccccc-ccccCCCCCCCCCCCCCCCCCcccccc
Q psy6533 89 QGVEA----NYNPKVTFLVVQKRHH-TRFFPTSPSEGDGSRNNNVRPGTIVDT 136 (387)
Q Consensus 89 ~~~~~----~~~Pk~t~Ivv~Krhh-tRff~~~~~~~~~~~~~N~~pGTvVD~ 136 (387)
.+++. +++|+++||+|+|||| +|+|..+ ..+||+|||+||.
T Consensus 273 ~~~~~~~~~~~~~~l~~IvV~Kr~~~~r~f~~~-------~~~nP~~GTvVd~ 318 (427)
T 2w42_A 273 EELKKQEMVSRDVKYAILHLNETHPFWVMGDPN-------NRFHPYEGTKVKL 318 (427)
T ss_dssp HHHHHTTSSCTTCEEEEEEEEECCCEEEEC---------------CCSEEEES
T ss_pred HHhccccccCCCCCEEEEEEEccccceeeecCC-------CCCCCCCceEEEc
Confidence 99876 7999999999999999 7888631 2369999999996
No 16
>1u04_A Argonaute, hypothetical protein PF0537; RNAI, silencing, PIWI, PAZ, RISC, slicer, RNAse H hydrolase-gene regulation complex; 2.25A {Pyrococcus furiosus} SCOP: b.34.14.1 c.55.3.10 PDB: 1z25_A 1z26_A
Probab=99.40 E-value=2.7e-13 Score=145.86 Aligned_cols=96 Identities=21% Similarity=0.253 Sum_probs=76.6
Q ss_pred hhhHHHHHHHHHHHHHHHHh-cCCCCeeEEEeeccCChhHHHHHHHhcCCCCCcccccccccccchHHHHHHHHHHHhhh
Q psy6533 14 KKKEEEEKKQKKQKKKKKKV-NKVKPVHIIFYRDGVSEGQFQAVMRRCGPCSNRSVAGLSYTIFTGAEISAIKRACQGVE 92 (387)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~-n~~~P~~Ii~yRDGVsegq~~~v~~~~~~~~~~~~~~~~y~~~~~~E~~~ik~a~~~~~ 92 (387)
+.++ ++..++++|++|++. ++.+|++|||||||+ |++ .|+++|++||...
T Consensus 597 E~i~-l~~~l~~~L~~y~~~n~~~lP~RIIiyRDG~-------v~~--------------------~El~~i~ea~~~~- 647 (771)
T 1u04_A 597 ESVD-MNEFFKEMVDKFKEFNIKLDNKKILLLRDGR-------ITN--------------------NEEEGLKYISEMF- 647 (771)
T ss_dssp SSCC-HHHHHHHHHHHHHHTTCCCTTCEEEEECSBC-------CCH--------------------HHHHHHHHHHHHH-
T ss_pred cEEc-HHHHHHHHHHHHHHHhCCCCCCEEEEEcCCC-------CCH--------------------HHHHHHHHHHHhc-
Confidence 4455 777999999999998 588999999999996 443 7999999999764
Q ss_pred ccCCCcEEEEEecccccccccCCCCCCCCCCCCCCCCCccccccccccCCCcceeeeeec-eeeecceee
Q psy6533 93 ANYNPKVTFLVVQKRHHTRFFPTSPSEGDGSRNNNVRPGTIVDTTITHPTDLDFYLVSHQ-SIQVGILTQ 161 (387)
Q Consensus 93 ~~~~Pk~t~Ivv~KrhhtRff~~~~~~~~~~~~~N~~pGTvVD~~Vt~P~~~dfY~~~k~-~~~~GI~TQ 161 (387)
+|+++||+|+||||+|||. + .+|||+|| . |||+++|. ....|+++.
T Consensus 648 ---~p~itfIvV~Krh~tRfF~-~-----------~~pGTVV~-------~-DFyL~Sh~v~~~qGTprP 694 (771)
T 1u04_A 648 ---DIEVVTMDVIKNHPVRAFA-N-----------MKMYFNLG-------G-AIYLIPHKLKQAKGTPIP 694 (771)
T ss_dssp ---TCEEEEEEEESCCCCCBSS-C-----------SCEEEEET-------T-EEEEECSCCSSSCSCCCC
T ss_pred ---CCCEEEEEEEecCceeeec-C-----------CCCeeEEe-------C-CEEEEeccccCCCCCCCC
Confidence 5899999999999999993 1 25899983 3 99999996 222445443
No 17
>4g0o_A Protein argonaute 5; MID domain, small RNA 5' nucleotide recognition, gene regula; 2.19A {Arabidopsis thaliana}
Probab=99.28 E-value=3.9e-13 Score=116.54 Aligned_cols=106 Identities=22% Similarity=0.367 Sum_probs=71.5
Q ss_pred HHHHHHHHHHHhhhccCCCc--EEEEEecccccccccCCCCCCCCCCCCCCCCCccccccccccCCCcceeeeeec--ee
Q psy6533 79 AEISAIKRACQGVEANYNPK--VTFLVVQKRHHTRFFPTSPSEGDGSRNNNVRPGTIVDTTITHPTDLDFYLVSHQ--SI 154 (387)
Q Consensus 79 ~E~~~ik~a~~~~~~~~~Pk--~t~Ivv~KrhhtRff~~~~~~~~~~~~~N~~pGTvVD~~Vt~P~~~dfY~~~k~--~~ 154 (387)
..+..+.++|..+|....++ +.........-.+++..- .... ++..+ .+++.|.....|..+|+ ++
T Consensus 30 ~F~~~L~~~~~~~Gm~i~~p~~~~~~~~~~~~~e~~l~~~--------~~~~-~~~ql-v~~ilp~~~~~Y~~iK~~~~~ 99 (139)
T 4g0o_A 30 EFCKQLIGMCVSKGMEFKPQPAIPFISCPPEHIEEALLDI--------HKRA-PGLQL-LIVILPDVTGSYGKIKRICET 99 (139)
T ss_dssp HHHHHHHHHHHHHTCEECSSCSSCCEECCGGGHHHHHHHH--------HHHC-TTCSE-EEEECCSSSSCHHHHHCCCCC
T ss_pred HHHHHHHHHHHHcCCccCCCCEEeeecCCchhHHHHHHHH--------HHhc-CCCcE-EEEEECCCCCcHHHHHHHHhc
Confidence 46778999999888765432 221111111112222210 0001 22222 25778854334999998 78
Q ss_pred eecceeeeccccccccCCchhHHHHHHHHHhhcCCccccc
Q psy6533 155 QVGILTQCIKEKTVFKMNPATTGNILLKINAKLNGINHYV 194 (387)
Q Consensus 155 ~~GI~TQcv~~~tv~k~n~~~~~ni~lKiN~KlGG~n~~l 194 (387)
..||+|||+..+++.+.++|+++||++|||+||||+||.|
T Consensus 100 ~~gi~tQcv~~~~~~k~~~q~~~nv~lKiN~KlGG~N~~l 139 (139)
T 4g0o_A 100 ELGIVSQCCQPRQVNKLNKQYMENVALKINVKTGGRNTVL 139 (139)
T ss_dssp CCCCCEEEECHHHHHHTCHHHHHHHHHHHHHHTTCEEEEC
T ss_pred cCCcceEEechhhhcCCCHHHHHHHHHHHhhhhCcccCcC
Confidence 9999999999999988899999999999999999999975
No 18
>4g0x_A Protein argonaute 1; MID domain, small RNA 5' nucleotide recognition, gene regula; 1.35A {Arabidopsis thaliana} PDB: 4g0q_A* 4g0p_A 4g0y_A* 4g0z_A* 3vna_A 3vnb_A
Probab=99.25 E-value=4e-13 Score=117.54 Aligned_cols=58 Identities=33% Similarity=0.517 Sum_probs=52.4
Q ss_pred ccccCC-Ccceeeeeec--eeeecceeeeccccccccCCchhHHHHHHHHHhhcCCccccc
Q psy6533 137 TITHPT-DLDFYLVSHQ--SIQVGILTQCIKEKTVFKMNPATTGNILLKINAKLNGINHYV 194 (387)
Q Consensus 137 ~Vt~P~-~~dfY~~~k~--~~~~GI~TQcv~~~tv~k~n~~~~~ni~lKiN~KlGG~n~~l 194 (387)
+++.|. ..+.|..+|+ ++..||+|||+..+++.+.++|+++||++|||+||||+||.|
T Consensus 87 ~~il~~~~~~~Y~~iK~~~~~~~gi~tqcv~~~~~~k~~~q~~~nv~lKiN~KlGG~N~~l 147 (147)
T 4g0x_A 87 IVILPDNNGSLYGDLKRICETELGIVSQCCLTKHVFKMSKQYMANVALKINVKVGGRNTVL 147 (147)
T ss_dssp EEEECSSCTTHHHHHHHHCCCCCCCCEEEEEHHHHHHCCHHHHHHHHHHHHHHTTCEECCC
T ss_pred EEEeCCCCccHHHHHHHHHccCCCcccEEechhhhcCCCHHHHHHHHHHHHHhhCcccccC
Confidence 467774 4578999999 789999999999999988899999999999999999999975
No 19
>3luc_A Protein argonaute-2; MID domain, ribonucleoprotein, RNA-binding, RNA-mediated GEN silencing, translation regulation, RNA binding protein; 1.69A {Homo sapiens} PDB: 3lud_A* 3lug_A 3luh_A 3luj_A* 3luk_A 3qx8_A* 3qx9_A*
Probab=99.22 E-value=1.7e-12 Score=112.33 Aligned_cols=103 Identities=22% Similarity=0.353 Sum_probs=70.9
Q ss_pred HHHHHHHHHHHhhhccCCCcEEEEEecccc--cccccCCCCCCCCCCCCCCCCCccccccccccCCCcceeeeeec--ee
Q psy6533 79 AEISAIKRACQGVEANYNPKVTFLVVQKRH--HTRFFPTSPSEGDGSRNNNVRPGTIVDTTITHPTDLDFYLVSHQ--SI 154 (387)
Q Consensus 79 ~E~~~ik~a~~~~~~~~~Pk~t~Ivv~Krh--htRff~~~~~~~~~~~~~N~~pGTvVD~~Vt~P~~~dfY~~~k~--~~ 154 (387)
.++..+.++|..+|....++..++....+. -.++|..- . .+ .++..+ .++++|...+.|..+|+ ++
T Consensus 32 ~F~~~L~~~~~~~Gm~i~~~p~~~~~~~~~~~v~~~~~~l-----~---~~-~~~~ql-v~~ilp~~~~~Y~~iK~~~~~ 101 (138)
T 3luc_A 32 SFTEQLRKISRDAGMPIQGQPCFCKYAQGADSVEPMFRHL-----K---NT-YAGLQL-VVVILPGKTPVYAEVKRVGDT 101 (138)
T ss_dssp HHHHHHHHHHHHHTCCBCSSCSEEEECCSGGGHHHHHHHH-----H---HH-CTTCCE-EEEEECSSCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCCCCCCCCeeeecCCcHHHHHHHHHHH-----H---hc-CCCCcE-EEEEECCCChHHHHHHHHhcc
Confidence 467789999999988765322222221111 12333210 0 00 022222 25788877889999999 78
Q ss_pred eecceeeeccccccccCCchhHHHHHHHHHhhcCCcc
Q psy6533 155 QVGILTQCIKEKTVFKMNPATTGNILLKINAKLNGIN 191 (387)
Q Consensus 155 ~~GI~TQcv~~~tv~k~n~~~~~ni~lKiN~KlGG~n 191 (387)
..||+|||+..+++.+.++|+++||++|||+||||+|
T Consensus 102 ~~gv~tqcv~~~~~~k~~~q~~~nv~lKiN~KlGG~N 138 (138)
T 3luc_A 102 VLGMATQCVQMKNVQRTTPQTLSNLCLKINVKLGGVN 138 (138)
T ss_dssp TSCCCEEEEEHHHHHSCCHHHHHHHHHHHHHHHSCC-
T ss_pred CCCcceEEeCchhccCCCHHHHHHHHHHHhhccCCcC
Confidence 9999999999999988899999999999999999987
No 20
>4g0m_A Protein argonaute 2; MID domain, small RNA 5' nucleotide recognition, gene regula; 2.31A {Arabidopsis thaliana}
Probab=99.15 E-value=5.2e-12 Score=110.79 Aligned_cols=108 Identities=17% Similarity=0.258 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHhhhccCCCcEEEEEe----ccccc--cc----ccCCCCCCCCCCCCCCCCCccccccccccCCCcceee
Q psy6533 79 AEISAIKRACQGVEANYNPKVTFLVV----QKRHH--TR----FFPTSPSEGDGSRNNNVRPGTIVDTTITHPTDLDFYL 148 (387)
Q Consensus 79 ~E~~~ik~a~~~~~~~~~Pk~t~Ivv----~Krhh--tR----ff~~~~~~~~~~~~~N~~pGTvVD~~Vt~P~~~dfY~ 148 (387)
..+..+.++|..+|....++...... ..+.. .+ .|.. .. ....+..|- . .+++.|...+.|.
T Consensus 31 ~f~~~l~~~~~~~Gm~i~~P~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~-~~~~~~~pq-l--v~~ilp~~~~~Y~ 102 (150)
T 4g0m_A 31 DFVDNLIDRCWRLGMQMEAPIVYKTSRMETLSNGNAIEELLRSVIDE----AS-RKHGGARPT-L--VLCAMSRKDDGYK 102 (150)
T ss_dssp THHHHHHHHHHHTTCEECCCSEEEECCGGGGGCHHHHHHHHHHHHHH----HH-HHTTTCCCC-E--EEEEESSCCTHHH
T ss_pred HHHHHHHHHHHHcCCccCCCceeeccccccccCchHHHHHHHHHHHH----HH-HhcCCCCCc-E--EEEEECCCCccHH
Confidence 57889999999998776544332221 11111 11 1110 00 000011222 2 2578886657799
Q ss_pred eeec--eeeecceeeeccccccccCCchhHHHHHHHHHhhcCCccccc
Q psy6533 149 VSHQ--SIQVGILTQCIKEKTVFKMNPATTGNILLKINAKLNGINHYV 194 (387)
Q Consensus 149 ~~k~--~~~~GI~TQcv~~~tv~k~n~~~~~ni~lKiN~KlGG~n~~l 194 (387)
.+|+ ++..||+|||+..+++.+.++|+++||++|||+||||+||.|
T Consensus 103 ~iK~~~~~~~gi~tqcv~~~~~~k~~~q~~~nv~lkiN~KlGG~n~~l 150 (150)
T 4g0m_A 103 TLKWIAETKLGLVTQCFLTGPATKGGDQYRANLALKMNAKVGGSNVEL 150 (150)
T ss_dssp HHHHCCCCCSCCEEEEEEHHHHSSSCHHHHHHHHHHHHHHC-------
T ss_pred HHHHHHhhccCcceEEeehhhccCCCHHHHHHHHHHHhhccCCccCcC
Confidence 9999 889999999999999998899999999999999999999975
No 21
>2w36_A Endonuclease V; hypoxanthine, endonuclease, endonucleasev, hydrolase, inosine, DNA damage, DNA repair; HET: BRU; 2.10A {Thermotoga maritima} PDB: 2w35_A 3hd0_A
Probab=42.45 E-value=1.2e+02 Score=27.46 Aligned_cols=122 Identities=16% Similarity=0.086 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHhhcccCCCCcEEEEEEeeccccccccC-------CCCCCCCCCCCCCCcceecccccccCCCcceeecc
Q psy6533 219 SAEISAIKRACQGVEANYNPKVTFLVVQKRHHTRFFPT-------SPSEGDGSRNNNVRPGTIVDTTITHPTDLDFYLVS 291 (387)
Q Consensus 219 ~~Ev~~I~~a~~~~~~~~~Pkit~Ivv~Krh~~Rff~~-------~~~~~~~~~~~N~~pGTvVd~~it~~~~~dFyL~s 291 (387)
..|++.|.+|+.++.. .|.+.+|=-+-..|-|-|.- -+.+ .-+=..|..-|+...-. ........|..
T Consensus 87 FRE~P~~l~al~~L~~--~PdlllvDG~Gi~HpR~~GlA~HlGv~l~~P-tIGVAK~~l~G~~~~~~--~~~g~~~~l~~ 161 (225)
T 2w36_A 87 FREGPLFLKAWEKLRT--KPDVVVFDGQGLAHPRKLGIASHMGLFIEIP-TIGVAKSRLYGTFKMPE--DKRCSWSYLYD 161 (225)
T ss_dssp HHHHHHHHHHHTTCCS--CCSEEEEESCSSSSTTSCCHHHHHHHHHTSC-EEEEESSCSSCBCCCCC--SSSSCEEEEEE
T ss_pred HhhhHHHHHHHHhcCC--CCCEEEEeCeEEEcCCCCCchhhhhhhhCCC-EEEEEecccCCCccccc--ccCCceeEecc
Confidence 5799999999999863 57777776665555554321 0100 00111222223322100 00111122221
Q ss_pred ccccccc-------cCCceEEEEecCCCCCHHHHHHHHHHhhhhccccCCCccCcchHHHHHHHHhhhhh
Q psy6533 292 HQSIQGT-------ARPTKYYRLWDEYNLTDDETEEMTYYLCHLFSRCTRSVSYPAPTYYAHLAAFRGRV 354 (387)
Q Consensus 292 ~~~~qGT-------arPt~Y~Vl~d~~~~~~d~lq~lT~~Lc~~y~~~~~~vslPaP~~yA~~~a~R~~~ 354 (387)
....-|. .+|. .+.=...++.++--.++-.+|- +--++|.|+..||++|.+.+.
T Consensus 162 ~ge~iG~~lRt~~~~kPl---yVS~Gh~i~l~~A~~~v~~~~~------~~yRlPEP~R~Ad~~s~~~~~ 222 (225)
T 2w36_A 162 GEEIIGCVIRTKEGSAPI---FVSPGHLMDVESSKRLIKAFTL------PGRRIPEPTRLAHIYTQRLKK 222 (225)
T ss_dssp TTEEEEEEECCSTTSCCE---EEEECSSCCHHHHHHHHHHHCC------TTCSSCHHHHHHHHHHHHHTT
T ss_pred CCEEEEEEEEcCCCccCE---EEeCCCCcCHHHHHHHHHHHhc------CCCCCCHHHHHHHHHHHHhhh
Confidence 1111121 2333 2223346788888888888772 124789999999999986543
No 22
>3qbz_A DDK kinase regulatory subunit DBF4; FHA domain,RAD53, replication checkpoint, cell cycle; 2.69A {Saccharomyces cerevisiae}
Probab=29.74 E-value=23 Score=30.62 Aligned_cols=53 Identities=15% Similarity=0.283 Sum_probs=35.6
Q ss_pred CCCCceEEEeccCCChhhHHHHHHHHHH----HHHHHHhhcccC----CCCcEEEEEEeec
Q psy6533 196 KVKPVHIIFYRDGVSEGQFQAVMSAEIS----AIKRACQGVEAN----YNPKVTFLVVQKR 248 (387)
Q Consensus 196 ~~~P~~IIiYRdGvsegq~~~v~~~Ev~----~I~~a~~~~~~~----~~Pkit~Ivv~Kr 248 (387)
..+|...+||.|++++.+.......+++ .+++++..+|.. +.-.+|+||..+.
T Consensus 57 kifk~~~vfYFDt~~~~~~~~~~k~kl~K~~~llkr~f~~LGA~I~~FFd~~VTiVIT~R~ 117 (160)
T 3qbz_A 57 KIMKRDSRIYFDITDDVEMNTYNKSKMDKRRDLLKRGFLTLGAQITQFFDTTVTIVITRRS 117 (160)
T ss_dssp HHHHHHCEEEECCCCSSCCCHHHHHHHHHHHHHHHHHHHTTTCEEESSCCTTCCEEEESSC
T ss_pred HhCccCcEEEecCCChhhhhHHHHHHHHHHHHHHHHHHHHcCCEeeeeccCCeEEEEecCc
Confidence 4567678999999998755444344433 366888888743 5667887775543
No 23
>3ga2_A Endonuclease V; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Bacillus subtilis}
Probab=27.71 E-value=51 Score=30.51 Aligned_cols=52 Identities=17% Similarity=0.189 Sum_probs=38.9
Q ss_pred cCCceEEEEecCCCCCHHHHHHHHHHhhhhccccCCCccCcchHHHHHHHHhhhhhhhccc
Q psy6533 299 ARPTKYYRLWDEYNLTDDETEEMTYYLCHLFSRCTRSVSYPAPTYYAHLAAFRGRVYIKNR 359 (387)
Q Consensus 299 arPt~Y~Vl~d~~~~~~d~lq~lT~~Lc~~y~~~~~~vslPaP~~yA~~~a~R~~~~~~~~ 359 (387)
.+|....+-+ .++.+.--.++-++| ++.-++|.|+..||++|.+.|..+...
T Consensus 185 ~kPlyVS~Gh---~i~l~~A~~~v~~~~------~~~yRlPEP~R~AD~~a~~~r~~l~~~ 236 (246)
T 3ga2_A 185 VKPIFLSCGN---YIDLDSSYQITMSLI------NQESRLPIPVRLADLETHVLRTFYQKN 236 (246)
T ss_dssp SCCEEEEEEE---SSCHHHHHHHHHHTC------CTTCSSCHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCEEEeccC---CCCHHHHHHHHHHHc------cCCCCCChHHHHHHHHHHHHHHHHHHH
Confidence 5676666654 467787777887776 234578999999999999888877654
No 24
>3qbz_A DDK kinase regulatory subunit DBF4; FHA domain,RAD53, replication checkpoint, cell cycle; 2.69A {Saccharomyces cerevisiae}
Probab=25.27 E-value=47 Score=28.73 Aligned_cols=61 Identities=13% Similarity=0.202 Sum_probs=36.8
Q ss_pred HHHHHHhc-CCCCeeEEEeeccCChhHHHHHHHhcCCCCCcccccccccccchHHH----HHHHHHHHhhhcc----CCC
Q psy6533 27 KKKKKKVN-KVKPVHIIFYRDGVSEGQFQAVMRRCGPCSNRSVAGLSYTIFTGAEI----SAIKRACQGVEAN----YNP 97 (387)
Q Consensus 27 ~~~~~~~n-~~~P~~Ii~yRDGVsegq~~~v~~~~~~~~~~~~~~~~y~~~~~~E~----~~ik~a~~~~~~~----~~P 97 (387)
+..|++.- +.+|...+||-|++++.+....+. .++ .-+++++..+|.. +.-
T Consensus 48 L~~WQ~~WRkifk~~~vfYFDt~~~~~~~~~~k--------------------~kl~K~~~llkr~f~~LGA~I~~FFd~ 107 (160)
T 3qbz_A 48 LLEWQTNWKKIMKRDSRIYFDITDDVEMNTYNK--------------------SKMDKRRDLLKRGFLTLGAQITQFFDT 107 (160)
T ss_dssp HHHHHHHHHHHHHHHCEEEECCCCSSCCCHHHH--------------------HHHHHHHHHHHHHHHTTTCEEESSCCT
T ss_pred HHHHHHHHHHhCccCcEEEecCCChhhhhHHHH--------------------HHHHHHHHHHHHHHHHcCCEeeeeccC
Confidence 44444332 357766788889999875443322 233 3366777788754 566
Q ss_pred cEEEEEeccc
Q psy6533 98 KVTFLVVQKR 107 (387)
Q Consensus 98 k~t~Ivv~Kr 107 (387)
.+|.||..+.
T Consensus 108 ~VTiVIT~R~ 117 (160)
T 3qbz_A 108 TVTIVITRRS 117 (160)
T ss_dssp TCCEEEESSC
T ss_pred CeEEEEecCc
Confidence 8888775543
No 25
>3s82_A S-adenosylmethionine synthase; seattle structural genomics center for infectious disease, S adenosylmethionine synthetase, transferase; 1.73A {Mycobacterium avium} PDB: 3tde_A 3rv2_A
Probab=22.52 E-value=45 Score=32.97 Aligned_cols=31 Identities=19% Similarity=0.082 Sum_probs=22.7
Q ss_pred hhccccCCCccCcchHHHHHHHHhhhhhhhc
Q psy6533 327 HLFSRCTRSVSYPAPTYYAHLAAFRGRVYIK 357 (387)
Q Consensus 327 ~~y~~~~~~vslPaP~~yA~~~a~R~~~~~~ 357 (387)
|-|+---.+--||.|++|||++++|-...=+
T Consensus 143 FGYA~~ET~elMPlpi~lAH~L~~rla~~Rk 173 (407)
T 3s82_A 143 FGYAINDTPERMPLPIALAHRLSRRLTEVRK 173 (407)
T ss_dssp EEEEETTSTTSSCHHHHHHHHHHHHHHHHHH
T ss_pred EEEecCCCcccCchHHHHHHHHHHHHHHHHH
Confidence 4555555566799999999999987655433
No 26
>3iml_A S-adenosylmethionine synthetase; structural genomics, ATP-BI cobalt, magnesium, metal-binding, nucleotide-binding, one-C metabolism; 2.35A {Burkholderia pseudomallei}
Probab=22.18 E-value=45 Score=32.81 Aligned_cols=31 Identities=13% Similarity=0.051 Sum_probs=22.9
Q ss_pred hhccccCCCccCcchHHHHHHHHhhhhhhhc
Q psy6533 327 HLFSRCTRSVSYPAPTYYAHLAAFRGRVYIK 357 (387)
Q Consensus 327 ~~y~~~~~~vslPaP~~yA~~~a~R~~~~~~ 357 (387)
|.|+---.+--+|.|++|||++++|-...=+
T Consensus 131 FGYA~~ET~elMPlpi~lAH~L~~rl~~~Rk 161 (399)
T 3iml_A 131 FGYACDETPELMPLPIHLSHRLVERQANLRR 161 (399)
T ss_dssp EEEEETTSTTSCCHHHHHHHHHHHHHHHHHH
T ss_pred EEEecCCccccCCcHHHHHHHHHHHHHHHHH
Confidence 5555555566799999999999987655433
No 27
>1p7l_A S-adenosylmethionine synthetase; AMPPNP, SAM, transferase; HET: SAM ANP PPK; 2.50A {Escherichia coli} SCOP: d.130.1.1 d.130.1.1 d.130.1.1 PDB: 1fug_A 1mxb_A* 1mxc_A* 1mxa_A* 1rg9_A* 1xra_A 1xrb_A 1xrc_A
Probab=20.62 E-value=51 Score=32.30 Aligned_cols=32 Identities=31% Similarity=0.325 Sum_probs=23.0
Q ss_pred hhccccCCCccCcchHHHHHHHHhhhhhhhcc
Q psy6533 327 HLFSRCTRSVSYPAPTYYAHLAAFRGRVYIKN 358 (387)
Q Consensus 327 ~~y~~~~~~vslPaP~~yA~~~a~R~~~~~~~ 358 (387)
|.|+---.+--||.|++|||++++|-...=+.
T Consensus 123 FGYA~~ET~e~MPlpi~lAh~L~~rl~~~Rk~ 154 (383)
T 1p7l_A 123 FGYATNETDVLMPAPITYAHRLVQRQAEVRKN 154 (383)
T ss_dssp EEEEETTSTTSCCHHHHHHHHHHHHHHHHHHT
T ss_pred eEEecCCCcccCchHHHHHHHHHHHHHHHHhc
Confidence 44444445666999999999999887665444
Done!