RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy6533
(387 letters)
>gnl|CDD|240015 cd04657, Piwi_ago-like, Piwi_ago-like: PIWI domain, Argonaute-like
subfamily. Argonaute is the central component of the
RNA-induced silencing complex (RISC) and related
complexes. The PIWI domain is the C-terminal portion of
Argonaute and consists of two subdomains, one of which
provides the 5' anchoring of the guide RNA and the
other, the catalytic site for slicing.
Length = 426
Score = 293 bits (753), Expect = 2e-96
Identities = 96/162 (59%), Positives = 116/162 (71%), Gaps = 1/162 (0%)
Query: 195 NKVKPVHIIFYRDGVSEGQFQAVMSAEISAIKRACQGVEANYNPKVTFLVVQKRHHTRFF 254
P II+YRDGVSEGQF V++ E+ AI++AC + Y PK+TF+VVQKRHHTRFF
Sbjct: 266 TGKLPERIIYYRDGVSEGQFAQVLNEELPAIRKACAKLYPGYKPKITFIVVQKRHHTRFF 325
Query: 255 PTSPSEGDGSRNNNVRPGTIVDTTITHPTDLDFYLVSHQSIQGTARPTKYYRLWDEYNLT 314
PT + DG +N NV PGT+VD ITHP + DFYL SH IQGTARPT Y+ LWDE T
Sbjct: 326 PTDEDDADG-KNGNVPPGTVVDRGITHPREFDFYLCSHAGIQGTARPTHYHVLWDEIGFT 384
Query: 315 DDETEEMTYYLCHLFSRCTRSVSYPAPTYYAHLAAFRGRVYI 356
DE + +TY LC+ ++RCTRSVS P P YYAHLAA R R Y+
Sbjct: 385 ADELQTLTYNLCYTYARCTRSVSIPPPAYYAHLAAARARCYL 426
Score = 169 bits (430), Expect = 2e-48
Identities = 61/125 (48%), Positives = 73/125 (58%), Gaps = 21/125 (16%)
Query: 31 KKVNKVKPVHIIFYRDGVSEGQFQAVMRRCGPCSNRSVAGLSYTIFTGAEISAIKRACQG 90
KK P II+YRDGVSEGQF V+ E+ AI++AC
Sbjct: 263 KKATGKLPERIIYYRDGVSEGQFAQVLNE--------------------ELPAIRKACAK 302
Query: 91 VEANYNPKVTFLVVQKRHHTRFFPTSPSEGDGSRNNNVRPGTIVDTTITHPTDLDFYLVS 150
+ Y PK+TF+VVQKRHHTRFFPT + DG +N NV PGT+VD ITHP + DFYL S
Sbjct: 303 LYPGYKPKITFIVVQKRHHTRFFPTDEDDADG-KNGNVPPGTVVDRGITHPREFDFYLCS 361
Query: 151 HQSIQ 155
H IQ
Sbjct: 362 HAGIQ 366
Score = 65.7 bits (161), Expect = 1e-11
Identities = 21/40 (52%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 154 IQVGILTQCIKEKTVFK-MNPATTGNILLKINAKLNGINH 192
++GI TQC+ K V K NP N+ LKIN KL GINH
Sbjct: 145 TELGIHTQCVLAKKVTKKGNPQYFANVALKINLKLGGINH 184
>gnl|CDD|214930 smart00950, Piwi, This domain is found in the protein Piwi and its
relatives. The function of this domain is the dsRNA
guided hydrolysis of ssRNA. Determination of the crystal
structure of Argonaute reveals that PIWI is an RNase H
domain, and identifies Argonaute as Slicer, the enzyme
that cleaves mRNA in the RNAi RISC complex.. In
addition, Mg+2 dependence and production of 3'-OH and 5'
phosphate products are shared characteristics of RNaseH
and RISC. The PIWI domain core has a tertiary structure
belonging to the RNase H family of enzymes. RNase H fold
proteins all have a five-stranded mixed beta-sheet
surrounded by helices. By analogy to RNase H enzymes
which cleave single-stranded RNA guided by the DNA
strand in an RNA/DNA hybrid, the PIWI domain can be
inferred to cleave single-stranded RNA, for example
mRNA, guided by double stranded siRNA.
Length = 301
Score = 222 bits (569), Expect = 1e-70
Identities = 92/163 (56%), Positives = 111/163 (68%), Gaps = 5/163 (3%)
Query: 195 NKVKPVHIIFYRDGVSEGQFQAVMSAEISAIKRACQGVEANYNPKVTFLVVQKRHHTRFF 254
K P I+ YRDGVSEGQF+ V+ E+ AIK+AC+ + +Y PK+T +VVQKRHHTRFF
Sbjct: 144 RKRLPDRIVVYRDGVSEGQFKQVLEYEVKAIKKACKELGPDYKPKLTVIVVQKRHHTRFF 203
Query: 255 PTSPSEGDGSRNNNVRPGTIVDTTITHPTDLDFYLVSHQSIQGTARPTKYYRLWDEYNLT 314
P DG+ NV PGT+VD+ IT P DFYLVSH +QGTARPT Y L+DE NL
Sbjct: 204 PE-----DGNGRVNVPPGTVVDSVITSPEWYDFYLVSHAGLQGTARPTHYTVLYDEGNLD 258
Query: 315 DDETEEMTYYLCHLFSRCTRSVSYPAPTYYAHLAAFRGRVYIK 357
DE + +TY LCHL+ R TR VS PAP YYAHL A R R +
Sbjct: 259 PDELQRLTYKLCHLYYRSTRPVSLPAPVYYAHLLAKRARQLLH 301
Score = 128 bits (324), Expect = 2e-34
Identities = 59/129 (45%), Positives = 73/129 (56%), Gaps = 25/129 (19%)
Query: 27 KKKKKKVNKVKPVHIIFYRDGVSEGQFQAVMRRCGPCSNRSVAGLSYTIFTGAEISAIKR 86
KK K K P I+ YRDGVSEGQF+ V+ E+ AIK+
Sbjct: 137 KKYYKSNRKRLPDRIVVYRDGVSEGQFKQVLEY--------------------EVKAIKK 176
Query: 87 ACQGVEANYNPKVTFLVVQKRHHTRFFPTSPSEGDGSRNNNVRPGTIVDTTITHPTDLDF 146
AC+ + +Y PK+T +VVQKRHHTRFFP DG+ NV PGT+VD+ IT P DF
Sbjct: 177 ACKELGPDYKPKLTVIVVQKRHHTRFFPE-----DGNGRVNVPPGTVVDSVITSPEWYDF 231
Query: 147 YLVSHQSIQ 155
YLVSH +Q
Sbjct: 232 YLVSHAGLQ 240
Score = 49.3 bits (118), Expect = 1e-06
Identities = 22/60 (36%), Positives = 32/60 (53%), Gaps = 9/60 (15%)
Query: 155 QVGILTQCIKEKTVFKM-----NPATTGNILLKINAKLNGINHYVNKV----KPVHIIFY 205
++G+ TQC++ KT+ K+ N+ LKINAKL GIN ++ KP II
Sbjct: 25 KLGVPTQCVQAKTLDKVSKRRKLKQYLTNVALKINAKLGGINWVLDVPPIPLKPTLIIGI 84
>gnl|CDD|216915 pfam02171, Piwi, Piwi domain. This domain is found in the protein
Piwi and its relatives. The function of this domain is
the dsRNA guided hydrolysis of ssRNA. Determination of
the crystal structure of Argonaute reveals that PIWI is
an RNase H domain, and identifies Argonaute as Slicer,
the enzyme that cleaves mRNA in the RNAi RISC complex.
In addition, Mg+2 dependence and production of 3'-OH and
5' phosphate products are shared characteristics of
RNaseH and RISC. The PIWI domain core has a tertiary
structure belonging to the RNase H family of enzymes.
RNase H fold proteins all have a five-stranded mixed
beta-sheet surrounded by helices. By analogy to RNase H
enzymes which cleave single-stranded RNA guided by the
DNA strand in an RNA/DNA hybrid, the PIWI domain can be
inferred to cleave single-stranded RNA, for example
mRNA, guided by double stranded siRNA.
Length = 296
Score = 205 bits (524), Expect = 9e-64
Identities = 84/163 (51%), Positives = 104/163 (63%), Gaps = 4/163 (2%)
Query: 195 NKVKPVHIIFYRDGVSEGQFQAVMSAEISAIKRACQGVEANYNPKVTFLVVQKRHHTRFF 254
K KP II YRDGVSEGQF V++ E++ IK AC+ + Y PK+T +VVQKRHHTRFF
Sbjct: 138 RKKKPERIIVYRDGVSEGQFPQVLNYEVNQIKEACKELGEGYRPKLTVIVVQKRHHTRFF 197
Query: 255 PTSPSEGDGSRNNNVRPGTIVDTTITHPTDLDFYLVSHQSIQGTARPTKYYRLWDEYNLT 314
G N PGT+VD IT P DFYL SH QGT +PTKY L+DE L+
Sbjct: 198 A----SGKRDGAQNPPPGTVVDDVITSPEYYDFYLCSHAGRQGTVKPTKYTVLYDEIGLS 253
Query: 315 DDETEEMTYYLCHLFSRCTRSVSYPAPTYYAHLAAFRGRVYIK 357
+E +++TY LC+++ R R VS PAP YYAH A RGR +K
Sbjct: 254 PEELQQLTYKLCYMYQRVFRPVSLPAPVYYAHKLAKRGRNNLK 296
Score = 119 bits (300), Expect = 5e-31
Identities = 54/125 (43%), Positives = 62/125 (49%), Gaps = 24/125 (19%)
Query: 31 KKVNKVKPVHIIFYRDGVSEGQFQAVMRRCGPCSNRSVAGLSYTIFTGAEISAIKRACQG 90
K K KP II YRDGVSEGQF V+ E++ IK AC+
Sbjct: 135 YKSRKKKPERIIVYRDGVSEGQFPQVLN--------------------YEVNQIKEACKE 174
Query: 91 VEANYNPKVTFLVVQKRHHTRFFPTSPSEGDGSRNNNVRPGTIVDTTITHPTDLDFYLVS 150
+ Y PK+T +VVQKRHHTRFF G N PGT+VD IT P DFYL S
Sbjct: 175 LGEGYRPKLTVIVVQKRHHTRFFA----SGKRDGAQNPPPGTVVDDVITSPEYYDFYLCS 230
Query: 151 HQSIQ 155
H Q
Sbjct: 231 HAGRQ 235
>gnl|CDD|239208 cd02826, Piwi-like, Piwi-like: PIWI domain. Domain found in
proteins involved in RNA silencing. RNA silencing refers
to a group of related gene-silencing mechanisms mediated
by short RNA molecules, including siRNAs, miRNAs, and
heterochromatin-related guide RNAs. The central
component of the RNA-induced silencing complex (RISC)
and related complexes is Argonaute. The PIWI domain is
the C-terminal portion of Argonaute and consists of two
subdomains, one of which provides the 5' anchoring of
the guide RNA and the other, the catalytic site for
slicing. This domain is also found in closely related
proteins, including the Piwi subfamily, where it is
believed to perform a crucial role in germline cells,
via a similar mechanism.
Length = 393
Score = 167 bits (426), Expect = 2e-48
Identities = 70/158 (44%), Positives = 93/158 (58%), Gaps = 5/158 (3%)
Query: 196 KVKPVHIIFYRDGVSEGQFQAVMSAEISAIKRACQGVEANYNPKVTFLVVQKRHHTRFFP 255
+ P I+ YRDGVSEG+F+ V E+ I + +E +Y PK+ +VVQKRH+TRFFP
Sbjct: 240 EGLPEKIVIYRDGVSEGEFKRVKE-EVEEIIKEACEIEESYRPKLVIIVVQKRHNTRFFP 298
Query: 256 TSPSEGDGSRNNNVRPGTIVDTTITHPTDLDFYLVSHQSIQGTARPTKYYRLWDEYNLTD 315
N PGT+VD TIT P +FYL SH + QGT +PTKY ++++ N +
Sbjct: 299 ----NEKNGGVQNPEPGTVVDHTITSPGLSEFYLASHVARQGTVKPTKYTVVFNDKNWSL 354
Query: 316 DETEEMTYYLCHLFSRCTRSVSYPAPTYYAHLAAFRGR 353
+E E +TY LC +S PAP YYAH A RGR
Sbjct: 355 NELEILTYILCLTHQNVYSPISLPAPLYYAHKLAKRGR 392
Score = 101 bits (254), Expect = 6e-24
Identities = 47/126 (37%), Positives = 61/126 (48%), Gaps = 25/126 (19%)
Query: 30 KKKVNKVKPVHIIFYRDGVSEGQFQAVMRRCGPCSNRSVAGLSYTIFTGAEISAIKRACQ 89
KK + P I+ YRDGVSEG+F+ V E+ I +
Sbjct: 235 KKSTGEGLPEKIVIYRDGVSEGEFKRVKE---------------------EVEEIIKEAC 273
Query: 90 GVEANYNPKVTFLVVQKRHHTRFFPTSPSEGDGSRNNNVRPGTIVDTTITHPTDLDFYLV 149
+E +Y PK+ +VVQKRH+TRFFP N PGT+VD TIT P +FYL
Sbjct: 274 EIEESYRPKLVIIVVQKRHNTRFFP----NEKNGGVQNPEPGTVVDHTITSPGLSEFYLA 329
Query: 150 SHQSIQ 155
SH + Q
Sbjct: 330 SHVARQ 335
>gnl|CDD|240016 cd04658, Piwi_piwi-like_Euk, Piwi_piwi-like_Euk: PIWI domain,
Piwi-like subfamily found in eukaryotes. This domain is
found in Piwi and closely related proteins, where it is
believed to perform a crucial role in germline cells,
via RNA silencing. RNA silencing refers to a group of
related gene-silencing mechanisms mediated by short RNA
molecules, including siRNAs, miRNAs, and
heterochromatin-related guide RNAs. The mechanism in
Piwi is believed to be similar to that in Argonaute, the
central component of the RNA-induced silencing complex
(RISC). The PIWI domain is the C-terminal portion of
Argonaute and consists of two subdomains, one of which
provides the 5' anchoring of the guide RNA and the
other, the catalytic site for slicing.
Length = 448
Score = 163 bits (414), Expect = 6e-46
Identities = 69/157 (43%), Positives = 90/157 (57%), Gaps = 5/157 (3%)
Query: 194 VNKVKPVHIIFYRDGVSEGQFQAVMSAEISAIKRACQGVEANYNPKVTFLVVQKRHHTRF 253
NK P II YRDGV +GQ + V E+ IK+A + NY+PK+ ++VV KR +TRF
Sbjct: 293 ENKKLPSRIIIYRDGVGDGQLKKVKEYEVPQIKKAIKQYSENYSPKLAYIVVNKRINTRF 352
Query: 254 FPTSPSEGDGSRNNNVRPGTIVDTTITHPTDLDFYLVSHQSIQGTARPTKYYRLWDEYNL 313
F G+ +N PGT+VD+ IT P DF+LVS QGT PT Y L+D L
Sbjct: 353 F-----NQGGNNFSNPPPGTVVDSEITKPEWYDFFLVSQSVRQGTVTPTHYNVLYDTTGL 407
Query: 314 TDDETEEMTYYLCHLFSRCTRSVSYPAPTYYAHLAAF 350
D + +TY LCHL+ + S+ PAP YAH AF
Sbjct: 408 KPDHLQRLTYKLCHLYYNWSGSIRVPAPCQYAHKLAF 444
Score = 103 bits (260), Expect = 2e-24
Identities = 47/125 (37%), Positives = 62/125 (49%), Gaps = 25/125 (20%)
Query: 31 KKVNKVKPVHIIFYRDGVSEGQFQAVMRRCGPCSNRSVAGLSYTIFTGAEISAIKRACQG 90
KK NK P II YRDGV +GQ + V E+ IK+A +
Sbjct: 291 KKENKKLPSRIIIYRDGVGDGQLKKVK--------------------EYEVPQIKKAIKQ 330
Query: 91 VEANYNPKVTFLVVQKRHHTRFFPTSPSEGDGSRNNNVRPGTIVDTTITHPTDLDFYLVS 150
NY+PK+ ++VV KR +TRFF G+ +N PGT+VD+ IT P DF+LVS
Sbjct: 331 YSENYSPKLAYIVVNKRINTRFF-----NQGGNNFSNPPPGTVVDSEITKPEWYDFFLVS 385
Query: 151 HQSIQ 155
Q
Sbjct: 386 QSVRQ 390
Score = 29.2 bits (66), Expect = 3.7
Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Query: 154 IQVGILTQCIKEKTVFKMNPATT--GNILLKINAKLNGI 190
++ + +Q I +T+ K + I L+INAKL GI
Sbjct: 177 VECPVPSQVITSRTLKKKKNLRSIASKIALQINAKLGGI 215
>gnl|CDD|215631 PLN03202, PLN03202, protein argonaute; Provisional.
Length = 900
Score = 163 bits (414), Expect = 3e-44
Identities = 69/164 (42%), Positives = 101/164 (61%), Gaps = 9/164 (5%)
Query: 195 NKVKPVHIIFYRDGVSEGQFQAVMSAEISAIKRACQGVEANYNPKVTFLVVQKRHHTRFF 254
K KP II +RDGVSE QF V++ E+ I AC+ ++ +++PK T +V QK HHT+FF
Sbjct: 706 GKRKPEQIIIFRDGVSESQFNQVLNIELDQIIEACKFLDESWSPKFTVIVAQKNHHTKFF 765
Query: 255 -PTSPSEGDGSRNNNVRPGTIVDTTITHPTDLDFYLVSHQSIQGTARPTKYYRLWDEYNL 313
SP +NV PGT+VD I HP + DFY+ +H + GT RPT Y+ L DE
Sbjct: 766 QAGSP--------DNVPPGTVVDNKICHPRNNDFYMCAHAGMIGTTRPTHYHVLLDEIGF 817
Query: 314 TDDETEEMTYYLCHLFSRCTRSVSYPAPTYYAHLAAFRGRVYIK 357
+ D+ +E+ + L +++ R T ++S AP YAHLAA + ++K
Sbjct: 818 SADDLQELVHSLSYVYQRSTTAISVVAPVCYAHLAAAQMGQFMK 861
Score = 102 bits (257), Expect = 1e-23
Identities = 45/119 (37%), Positives = 61/119 (51%), Gaps = 29/119 (24%)
Query: 34 NKVKPVHIIFYRDGVSEGQFQAVMRRCGPCSNRSVAGLSYTIFTGAEISAIKRACQGVEA 93
K KP II +RDGVSE QF V+ E+ I AC+ ++
Sbjct: 706 GKRKPEQIIIFRDGVSESQFNQVLN--------------------IELDQIIEACKFLDE 745
Query: 94 NYNPKVTFLVVQKRHHTRFF-PTSPSEGDGSRNNNVRPGTIVDTTITHPTDLDFYLVSH 151
+++PK T +V QK HHT+FF SP +NV PGT+VD I HP + DFY+ +H
Sbjct: 746 SWSPKFTVIVAQKNHHTKFFQAGSP--------DNVPPGTVVDNKICHPRNNDFYMCAH 796
Score = 40.9 bits (96), Expect = 0.001
Identities = 18/37 (48%), Positives = 24/37 (64%), Gaps = 3/37 (8%)
Query: 155 QVGILTQCIKEKTVFKMNPATTGNILLKINAKLNGIN 191
+ GI+TQCI ++N N+LLKINAKL G+N
Sbjct: 577 EFGIVTQCIAP---TRVNDQYLTNVLLKINAKLGGLN 610
>gnl|CDD|219746 pfam08208, RNA_polI_A34, DNA-directed RNA polymerase I subunit
RPA34.5. This is a family of proteins conserved from
yeasts to human. Subunit A34.5 of RNA polymerase I is a
non-essential subunit which is thought to help Pol I
overcome topological constraints imposed on ribosomal
DNA during the process of transcription.
Length = 193
Score = 42.4 bits (100), Expect = 1e-04
Identities = 22/38 (57%), Positives = 29/38 (76%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNKVKP 38
EEEE+ EKKKKK+ KKE++EKK KK+K + K +K K
Sbjct: 150 EEEEKKEKKKKKEVKKEKKEKKDKKEKMVEPKGSKKKK 187
Score = 41.2 bits (97), Expect = 3e-04
Identities = 18/32 (56%), Positives = 28/32 (87%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKK 32
E+E E E+++KK+KKK++E KK+KK+KK KK+
Sbjct: 144 EKEAEVEEEEKKEKKKKKEVKKEKKEKKDKKE 175
Score = 40.9 bits (96), Expect = 4e-04
Identities = 20/35 (57%), Positives = 27/35 (77%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNK 35
E EE+EKK+KKKKK+ ++EKK+KK KK+K K
Sbjct: 147 AEVEEEEKKEKKKKKEVKKEKKEKKDKKEKMVEPK 181
Score = 39.7 bits (93), Expect = 8e-04
Identities = 16/39 (41%), Positives = 26/39 (66%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNKVKPV 39
E E +++ K +K+ E E+++KK+KKKKK+V K K
Sbjct: 131 ESETSEKETTAKVEKEAEVEEEEKKEKKKKKEVKKEKKE 169
Score = 39.7 bits (93), Expect = 0.001
Identities = 17/32 (53%), Positives = 25/32 (78%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKK 32
+E ++++K+KK KK+K E K KK+KKKKKK
Sbjct: 161 KEVKKEKKEKKDKKEKMVEPKGSKKKKKKKKK 192
Score = 38.9 bits (91), Expect = 0.002
Identities = 18/37 (48%), Positives = 28/37 (75%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNKVK 37
E E E+E+KK+KKKKKE +++K++K+ KK+K V
Sbjct: 146 EAEVEEEEKKEKKKKKEVKKEKKEKKDKKEKMVEPKG 182
Score = 38.2 bits (89), Expect = 0.003
Identities = 17/37 (45%), Positives = 31/37 (83%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNKVK 37
+E E +E++KK+KKKK+E +K++K++K KK+K+ + K
Sbjct: 145 KEAEVEEEEKKEKKKKKEVKKEKKEKKDKKEKMVEPK 181
Score = 38.2 bits (89), Expect = 0.003
Identities = 18/37 (48%), Positives = 25/37 (67%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNKVK 37
E+E K +K+ + EEEEKK+KK+KK+ KK K K
Sbjct: 134 TSEKETTAKVEKEAEVEEEEKKEKKKKKEVKKEKKEK 170
Score = 37.8 bits (88), Expect = 0.004
Identities = 16/31 (51%), Positives = 23/31 (74%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKK 31
++E+ EKK KK+K E + K+KK+KKKKK
Sbjct: 163 VKKEKKEKKDKKEKMVEPKGSKKKKKKKKKK 193
Score = 36.6 bits (85), Expect = 0.009
Identities = 16/37 (43%), Positives = 27/37 (72%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNKVK 37
E++++ E KK+KK+KK+++EK + + KKKK K K
Sbjct: 156 EKKKKKEVKKEKKEKKDKKEKMVEPKGSKKKKKKKKK 192
Score = 36.2 bits (84), Expect = 0.014
Identities = 18/39 (46%), Positives = 26/39 (66%), Gaps = 2/39 (5%)
Query: 1 EEEEEDEKKKKKKKKKEEE--EKKQKKQKKKKKKVNKVK 37
E+E K +K+ + +EEE EKK+KK+ KK+KK K K
Sbjct: 135 SEKETTAKVEKEAEVEEEEKKEKKKKKEVKKEKKEKKDK 173
Score = 34.3 bits (79), Expect = 0.063
Identities = 15/36 (41%), Positives = 26/36 (72%)
Query: 2 EEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNKVK 37
+++++ KK+KK+KK ++E+ + K KKKKK K K
Sbjct: 158 KKKKEVKKEKKEKKDKKEKMVEPKGSKKKKKKKKKK 193
Score = 32.0 bits (73), Expect = 0.32
Identities = 12/38 (31%), Positives = 23/38 (60%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNKVKP 38
E + +K+ K E+E + ++++KK+KKK +VK
Sbjct: 128 LGSESETSEKETTAKVEKEAEVEEEEKKEKKKKKEVKK 165
>gnl|CDD|150884 pfam10278, Med19, Mediator of RNA pol II transcription subunit 19.
Med19 represents a family of conserved proteins which
are members of the multi-protein co-activator Mediator
complex. Mediator is required for activation of RNA
polymerase II transcription by DNA binding
transactivators.
Length = 178
Score = 41.7 bits (98), Expect = 1e-04
Identities = 17/35 (48%), Positives = 26/35 (74%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNK 35
E + EKK KKKK ++++E+K+KK++KKKKK
Sbjct: 135 EGLKGHEKKHKKKKHEDDKERKKKKKEKKKKKKRH 169
Score = 39.4 bits (92), Expect = 0.001
Identities = 17/39 (43%), Positives = 28/39 (71%)
Query: 2 EEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNKVKPVH 40
E + +KK KKKK E++++++KK+K+KKKK + P H
Sbjct: 135 EGLKGHEKKHKKKKHEDDKERKKKKKEKKKKKKRHSPEH 173
Score = 35.6 bits (82), Expect = 0.021
Identities = 15/40 (37%), Positives = 25/40 (62%), Gaps = 2/40 (5%)
Query: 2 EEEEDEKKKKKKKKKEEEEKKQKKQ--KKKKKKVNKVKPV 39
+ ++K KKKK + ++E KK+KK+ KKKK+ + V
Sbjct: 137 LKGHEKKHKKKKHEDDKERKKKKKEKKKKKKRHSPEHPGV 176
>gnl|CDD|215774 pfam00183, HSP90, Hsp90 protein.
Length = 529
Score = 42.4 bits (100), Expect = 3e-04
Identities = 18/49 (36%), Positives = 33/49 (67%), Gaps = 10/49 (20%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKV----------NKVKPV 39
EE++E+E+K K+++ +EE++++++KKK KKV NK KP+
Sbjct: 45 EEKKEEEEKTTDKEEEVDEEEEKEEKKKKTKKVKETTTEWELLNKTKPI 93
Score = 40.5 bits (95), Expect = 0.001
Identities = 16/39 (41%), Positives = 29/39 (74%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNKVKPV 39
EE+EE +++++K KEEE +++++++KKKK KVK
Sbjct: 42 EEKEEKKEEEEKTTDKEEEVDEEEEKEEKKKKTKKVKET 80
Score = 29.7 bits (67), Expect = 3.0
Identities = 13/38 (34%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Query: 2 EEEEDEKKKKKKKKKEEEEKKQKKQKKK--KKKVNKVK 37
+ EE E++KKK+++ ++E ++ K K KV KV
Sbjct: 347 KLEESEEEKKKREELKKEFEELCKWMKDILGDKVEKVV 384
>gnl|CDD|219868 pfam08496, Peptidase_S49_N, Peptidase family S49 N-terminal.
This domain is found to the N-terminus of bacterial
signal peptidases of the S49 family (pfam01343).
Length = 154
Score = 40.2 bits (95), Expect = 4e-04
Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 5 EDEKKKKKKKKKEEEEKKQKKQKKKKKKVNKVKP 38
+ E K +K +K+ E K + K +KKK K + KP
Sbjct: 65 KKELKAWEKAEKKAE-KAKAKAEKKKAKKEEPKP 97
Score = 32.5 bits (75), Expect = 0.14
Identities = 9/26 (34%), Positives = 18/26 (69%)
Query: 8 KKKKKKKKKEEEEKKQKKQKKKKKKV 33
+KK +K K + EKK+ K+++ K ++
Sbjct: 74 AEKKAEKAKAKAEKKKAKKEEPKPRL 99
Score = 30.2 bits (69), Expect = 0.92
Identities = 11/27 (40%), Positives = 18/27 (66%)
Query: 5 EDEKKKKKKKKKEEEEKKQKKQKKKKK 31
E +KK +K K + E+KK KK++ K +
Sbjct: 72 EKAEKKAEKAKAKAEKKKAKKEEPKPR 98
Score = 29.0 bits (66), Expect = 2.3
Identities = 8/27 (29%), Positives = 19/27 (70%)
Query: 3 EEEDEKKKKKKKKKEEEEKKQKKQKKK 29
E+ ++K +K K K E+++ K+++ K +
Sbjct: 72 EKAEKKAEKAKAKAEKKKAKKEEPKPR 98
Score = 27.1 bits (61), Expect = 9.4
Identities = 8/24 (33%), Positives = 16/24 (66%)
Query: 2 EEEEDEKKKKKKKKKEEEEKKQKK 25
E++ EK K K +KK+ ++++ K
Sbjct: 74 AEKKAEKAKAKAEKKKAKKEEPKP 97
>gnl|CDD|219924 pfam08597, eIF3_subunit, Translation initiation factor eIF3
subunit. This is a family of proteins which are
subunits of the eukaryotic translation initiation
factor 3 (eIF3). In yeast it is called Hcr1. The
Saccharomyces cerevisiae protein eIF3j (HCR1) has been
shown to be required for processing of 20S pre-rRNA and
binds to 18S rRNA and eIF3 subunits Rpg1p and Prt1p.
Length = 242
Score = 40.8 bits (96), Expect = 6e-04
Identities = 14/36 (38%), Positives = 23/36 (63%)
Query: 2 EEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNKVK 37
+EEEDE+K+++K K + K +K K K ++ K K
Sbjct: 38 DEEEDEEKEEEKAKVAAKAKAKKALKAKIEEKEKAK 73
Score = 37.3 bits (87), Expect = 0.007
Identities = 14/39 (35%), Positives = 25/39 (64%), Gaps = 7/39 (17%)
Query: 1 EEEEEDEKKK-------KKKKKKEEEEKKQKKQKKKKKK 32
+EEE++EK++ K K KK + K ++K+K K++K
Sbjct: 38 DEEEDEEKEEEKAKVAAKAKAKKALKAKIEEKEKAKREK 76
Score = 36.6 bits (85), Expect = 0.012
Identities = 11/32 (34%), Positives = 21/32 (65%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKK 32
E+ + K K KK K + E+K+K +++K++K
Sbjct: 48 EKAKVAAKAKAKKALKAKIEEKEKAKREKEEK 79
Score = 35.8 bits (83), Expect = 0.027
Identities = 9/32 (28%), Positives = 21/32 (65%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKK 32
EE+ + K K KK + + ++++K K++K++
Sbjct: 47 EEKAKVAAKAKAKKALKAKIEEKEKAKREKEE 78
Score = 31.6 bits (72), Expect = 0.53
Identities = 13/41 (31%), Positives = 25/41 (60%), Gaps = 4/41 (9%)
Query: 1 EEEEEDEK----KKKKKKKKEEEEKKQKKQKKKKKKVNKVK 37
E+E++D K +++ ++K+EE+ K K K KK K++
Sbjct: 27 EDEDDDVKDSWDEEEDEEKEEEKAKVAAKAKAKKALKAKIE 67
Score = 30.4 bits (69), Expect = 1.4
Identities = 9/22 (40%), Positives = 11/22 (50%)
Query: 14 KKKEEEEKKQKKQKKKKKKVNK 35
+K + EK K KKKK K
Sbjct: 192 NEKLKAEKAAKGGKKKKGKAKA 213
Score = 29.6 bits (67), Expect = 2.3
Identities = 11/27 (40%), Positives = 12/27 (44%), Gaps = 3/27 (11%)
Query: 12 KKKKKEEEEKKQKKQKKKKKKVNKVKP 38
+K K E K K KKKK K K
Sbjct: 192 NEKLKAE---KAAKGGKKKKGKAKAKL 215
Score = 27.7 bits (62), Expect = 8.6
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 11 KKKKKKEEEEKKQKKQKKKKKK 32
+K K E+ K KK+K K K
Sbjct: 192 NEKLKAEKAAKGGKKKKGKAKA 213
Score = 27.7 bits (62), Expect = 8.6
Identities = 12/35 (34%), Positives = 22/35 (62%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNK 35
++E+ED+ K ++E+EEK+++K K K K
Sbjct: 25 DDEDEDDDVKDSWDEEEDEEKEEEKAKVAAKAKAK 59
>gnl|CDD|219124 pfam06658, DUF1168, Protein of unknown function (DUF1168). This
family consists of several hypothetical eukaryotic
proteins of unknown function.
Length = 142
Score = 38.5 bits (90), Expect = 0.001
Identities = 20/45 (44%), Positives = 32/45 (71%), Gaps = 10/45 (22%)
Query: 1 EEEEEDE--KKKKKKKKKEEEEK--------KQKKQKKKKKKVNK 35
++E EDE ++K+++KK+++EEK ++KKQKKKKKK K
Sbjct: 60 KKETEDEEFQQKREEKKRKDEEKTAKKRAKRQKKKQKKKKKKKAK 104
Score = 37.3 bits (87), Expect = 0.003
Identities = 18/39 (46%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNKVKPV 39
E++ +DE+K KK+ K ++KKQKK+KKKK K K
Sbjct: 74 EKKRKDEEKTAKKRAK-RQKKKQKKKKKKKAKKGNKKEE 111
Score = 28.9 bits (65), Expect = 2.5
Identities = 13/26 (50%), Positives = 21/26 (80%)
Query: 7 EKKKKKKKKKEEEEKKQKKQKKKKKK 32
+KKK+KKKKK++ +K KK++K+ K
Sbjct: 91 QKKKQKKKKKKKAKKGNKKEEKEGSK 116
>gnl|CDD|240017 cd04659, Piwi_piwi-like_ProArk, Piwi_piwi-like_ProArk: PIWI domain,
Piwi-like subfamily found in Archaea and Bacteria. RNA
silencing refers to a group of related gene-silencing
mechanisms mediated by short RNA molecules, including
siRNAs, miRNAs, and heterochromatin-related guide RNAs.
The central component of the RNA-induced silencing
complex (RISC) and related complexes is Argonaute. The
PIWI domain is the C-terminal portion of Argonaute and
consists of two subdomains, one of which provides the 5'
anchoring of the guide RNA and the other, the catalytic
site for slicing. This domain is also found in closely
related proteins, including the Piwi subfamily, where it
is believed to perform a crucial role in germline cells,
via a similar mechanism.
Length = 404
Score = 39.7 bits (93), Expect = 0.002
Identities = 37/172 (21%), Positives = 55/172 (31%), Gaps = 31/172 (18%)
Query: 187 LNGINHYVNKVKPVHIIFYRDGVSEGQFQAVMSAEISAIKRACQGVEANYNPKVTFLVVQ 246
L G P ++ ++DG +F EI +K A + + KV + V
Sbjct: 248 LEGYRESHRGRDPKRLVLHKDG----RFTDE---EIEGLKEALEEL----GIKVDLVEVI 296
Query: 247 KRHHTRFFPTSPSEGDGSRNNNVRPGTIVDTTITHPTDLDFYLVSHQSIQ--------GT 298
K R F G R GT V +D + L +H S+ GT
Sbjct: 297 KSGPHRLFR----FGTYPNGFPPRRGTYV-----KLSDDEGLLWTHGSVPKYNTYPGMGT 347
Query: 299 ARPTKYYRLWDEYNLTDDETEEMTYYLCHL-FSRCTRSVSYPAPTYYAHLAA 349
RP R N ++ L L ++ P +YA A
Sbjct: 348 PRPLLLRR--HSGNTDLEQLASQILGLTKLNWNSFQFYSRLPVTIHYADRVA 397
Score = 30.4 bits (69), Expect = 1.7
Identities = 21/78 (26%), Positives = 28/78 (35%), Gaps = 13/78 (16%)
Query: 76 FTGAEISAIKRACQGVEANYNPKVTFLVVQKRHHTRFFPTSPSEGDGSRNNNVRPGTIVD 135
FT EI +K A + + KV + V K R F G R GT V
Sbjct: 271 FTDEEIEGLKEALEEL----GIKVDLVEVIKSGPHRLFR----FGTYPNGFPPRRGTYV- 321
Query: 136 TTITHPTDLDFYLVSHQS 153
+D + L +H S
Sbjct: 322 ----KLSDDEGLLWTHGS 335
>gnl|CDD|237035 PRK12280, rplW, 50S ribosomal protein L23; Reviewed.
Length = 158
Score = 37.4 bits (87), Expect = 0.003
Identities = 14/33 (42%), Positives = 23/33 (69%)
Query: 3 EEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNK 35
EE EK++K+ K+ EE++ K +K+KK+K K
Sbjct: 92 PEESEKEQKEVSKETEEKEAIKAKKEKKEKKEK 124
Score = 35.5 bits (82), Expect = 0.015
Identities = 13/33 (39%), Positives = 25/33 (75%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKV 33
E E+E ++ K+ ++KE + K++K++KK+KKV
Sbjct: 94 ESEKEQKEVSKETEEKEAIKAKKEKKEKKEKKV 126
Score = 34.7 bits (80), Expect = 0.031
Identities = 18/39 (46%), Positives = 25/39 (64%), Gaps = 2/39 (5%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKK--QKKKKKKVNKVK 37
E +E E+K+ K KKE++EKK+KK +K KKK K
Sbjct: 101 EVSKETEEKEAIKAKKEKKEKKEKKVAEKLAKKKSTKTT 139
Score = 34.4 bits (79), Expect = 0.038
Identities = 14/35 (40%), Positives = 25/35 (71%)
Query: 2 EEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNKV 36
EE ++++K+ K+ EE+E + K++KK+KK KV
Sbjct: 92 PEESEKEQKEVSKETEEKEAIKAKKEKKEKKEKKV 126
Score = 34.4 bits (79), Expect = 0.042
Identities = 15/32 (46%), Positives = 23/32 (71%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKK 32
EE E E+K+ K+ +E+E K KK+KK+KK+
Sbjct: 92 PEESEKEQKEVSKETEEKEAIKAKKEKKEKKE 123
Score = 33.6 bits (77), Expect = 0.082
Identities = 12/32 (37%), Positives = 25/32 (78%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKK 32
EE E+++K+ K+ +++E K +K++K+KK+K
Sbjct: 93 EESEKEQKEVSKETEEKEAIKAKKEKKEKKEK 124
Score = 32.8 bits (75), Expect = 0.13
Identities = 13/35 (37%), Positives = 23/35 (65%)
Query: 5 EDEKKKKKKKKKEEEEKKQKKQKKKKKKVNKVKPV 39
+E +K++K+ +E E+K+ + KK+KK K K V
Sbjct: 92 PEESEKEQKEVSKETEEKEAIKAKKEKKEKKEKKV 126
Score = 31.3 bits (71), Expect = 0.40
Identities = 14/37 (37%), Positives = 22/37 (59%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNKVK 37
E EE++ K KK+KK+++E+K +K KKK
Sbjct: 105 ETEEKEAIKAKKEKKEKKEKKVAEKLAKKKSTKTTKN 141
Score = 29.3 bits (66), Expect = 1.8
Identities = 16/37 (43%), Positives = 23/37 (62%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNKVK 37
EE+E K KK+KK+K+E++ +K KKK K K
Sbjct: 106 TEEKEAIKAKKEKKEKKEKKVAEKLAKKKSTKTTKNT 142
Score = 29.3 bits (66), Expect = 1.8
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
Query: 1 EEEEEDEKKKKKKKKKEE---EEKKQKKQKKKKKKVNKVKP 38
EE+E + KK+KK+KKE+ E+ +KK K K K
Sbjct: 107 EEKEAIKAKKEKKEKKEKKVAEKLAKKKSTKTTKNTTKKAT 147
Score = 28.6 bits (64), Expect = 3.7
Identities = 17/48 (35%), Positives = 21/48 (43%), Gaps = 9/48 (18%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKK---------QKKQKKKKKKVNKVKPV 39
+E EE E K KK+KKE++EKK K K K K
Sbjct: 104 KETEEKEAIKAKKEKKEKKEKKVAEKLAKKKSTKTTKNTTKKATKKTT 151
Score = 28.6 bits (64), Expect = 3.8
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Query: 1 EEEEEDEKK--KKKKKKKEEEEKKQKKQKKKKKKVNKVK 37
E++E+ EKK +K KKK + K +K KK K +
Sbjct: 117 EKKEKKEKKVAEKLAKKKSTKTTKNTTKKATKKTTTKKE 155
Score = 28.2 bits (63), Expect = 5.5
Identities = 12/35 (34%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
Query: 4 EEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNKVKP 38
E+ +K++K+ KE EEK+ K KK+ + K
Sbjct: 92 PEESEKEQKEVSKETEEKEAI---KAKKEKKEKKE 123
>gnl|CDD|220237 pfam09428, DUF2011, Fungal protein of unknown function (DUF2011).
This is a family of fungal proteins whose function is
unknown.
Length = 130
Score = 36.9 bits (86), Expect = 0.004
Identities = 10/31 (32%), Positives = 22/31 (70%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKK 31
E ++ +K+K+ +K E+K +++QK+K+K
Sbjct: 100 RERTKERAEKEKRTRKNREKKFKRRQKEKEK 130
Score = 32.6 bits (75), Expect = 0.12
Identities = 11/31 (35%), Positives = 22/31 (70%)
Query: 2 EEEEDEKKKKKKKKKEEEEKKQKKQKKKKKK 32
E E+ +K+K+ ++ EKK K+++K+K+K
Sbjct: 100 RERTKERAEKEKRTRKNREKKFKRRQKEKEK 130
Score = 31.5 bits (72), Expect = 0.26
Identities = 7/28 (25%), Positives = 19/28 (67%)
Query: 8 KKKKKKKKKEEEEKKQKKQKKKKKKVNK 35
+ ++++ KE EK+++ +K ++KK +
Sbjct: 96 LRLRRERTKERAEKEKRTRKNREKKFKR 123
Score = 30.7 bits (70), Expect = 0.47
Identities = 8/33 (24%), Positives = 18/33 (54%)
Query: 8 KKKKKKKKKEEEEKKQKKQKKKKKKVNKVKPVH 40
KK++ + E K++ +K+K+ + N+ K
Sbjct: 90 KKRRIALRLRRERTKERAEKEKRTRKNREKKFK 122
Score = 29.2 bits (66), Expect = 1.9
Identities = 8/31 (25%), Positives = 21/31 (67%)
Query: 7 EKKKKKKKKKEEEEKKQKKQKKKKKKVNKVK 37
++ K++ +KE+ +K +++K K+++ K K
Sbjct: 100 RERTKERAEKEKRTRKNREKKFKRRQKEKEK 130
>gnl|CDD|236877 PRK11192, PRK11192, ATP-dependent RNA helicase SrmB; Provisional.
Length = 434
Score = 38.4 bits (90), Expect = 0.005
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 7 EKKKKKKKKKEEEEKKQKKQKKKKKKVNKVK 37
EKK K KK ++ +KK+K+K+K K +
Sbjct: 385 EKKTGKPSKKVLAKRAEKKEKEKEKPKVKKR 415
Score = 37.6 bits (88), Expect = 0.008
Identities = 11/28 (39%), Positives = 19/28 (67%)
Query: 8 KKKKKKKKKEEEEKKQKKQKKKKKKVNK 35
K+ +KK+KE+E+ K KK+ + K + K
Sbjct: 397 AKRAEKKEKEKEKPKVKKRHRDTKNIGK 424
Score = 35.7 bits (83), Expect = 0.032
Identities = 10/30 (33%), Positives = 18/30 (60%)
Query: 9 KKKKKKKKEEEEKKQKKQKKKKKKVNKVKP 38
K+ +KKE+E++K K +K+ + N K
Sbjct: 396 LAKRAEKKEKEKEKPKVKKRHRDTKNIGKR 425
Score = 35.7 bits (83), Expect = 0.035
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 8 KKKKKKKKKEEEEKKQKKQKKKKKKVNKVK 37
K KK + EKK+K+++K K K
Sbjct: 389 GKPSKKVLAKRAEKKEKEKEKPKVKKRHRD 418
Score = 35.7 bits (83), Expect = 0.037
Identities = 9/30 (30%), Positives = 18/30 (60%)
Query: 8 KKKKKKKKKEEEEKKQKKQKKKKKKVNKVK 37
K K+ +K+E+EK++ K KK+ + +
Sbjct: 394 KVLAKRAEKKEKEKEKPKVKKRHRDTKNIG 423
Score = 35.3 bits (82), Expect = 0.050
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 3 EEEDEKKKKKKKKKEEEEKKQKKQKKKKKK 32
E++ K KK K E+K+++K+K K KK
Sbjct: 385 EKKTGKPSKKVLAKRAEKKEKEKEKPKVKK 414
Score = 35.3 bits (82), Expect = 0.055
Identities = 8/26 (30%), Positives = 17/26 (65%)
Query: 7 EKKKKKKKKKEEEEKKQKKQKKKKKK 32
K+ +KK++E+EK + K++ + K
Sbjct: 395 VLAKRAEKKEKEKEKPKVKKRHRDTK 420
Score = 34.9 bits (81), Expect = 0.067
Identities = 10/28 (35%), Positives = 18/28 (64%)
Query: 8 KKKKKKKKKEEEEKKQKKQKKKKKKVNK 35
KK K+ E++EK+++K K KK+ +
Sbjct: 392 SKKVLAKRAEKKEKEKEKPKVKKRHRDT 419
Score = 34.5 bits (80), Expect = 0.078
Identities = 11/35 (31%), Positives = 19/35 (54%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNK 35
E++E EK+K K KK+ + K K++K +
Sbjct: 400 AEKKEKEKEKPKVKKRHRDTKNIGKRRKPSGTSEE 434
Score = 34.5 bits (80), Expect = 0.085
Identities = 10/31 (32%), Positives = 20/31 (64%)
Query: 8 KKKKKKKKKEEEEKKQKKQKKKKKKVNKVKP 38
K+ +KK+K++E+ K +K+ + K + KP
Sbjct: 398 KRAEKKEKEKEKPKVKKRHRDTKNIGKRRKP 428
Score = 34.1 bits (79), Expect = 0.12
Identities = 9/28 (32%), Positives = 19/28 (67%)
Query: 8 KKKKKKKKKEEEEKKQKKQKKKKKKVNK 35
KK K+ +++E++K+K + KK+ + K
Sbjct: 393 KKVLAKRAEKKEKEKEKPKVKKRHRDTK 420
Score = 33.8 bits (78), Expect = 0.15
Identities = 10/30 (33%), Positives = 18/30 (60%)
Query: 8 KKKKKKKKKEEEEKKQKKQKKKKKKVNKVK 37
KK K+ E+++K+K++ K KK+ K
Sbjct: 391 PSKKVLAKRAEKKEKEKEKPKVKKRHRDTK 420
Score = 32.6 bits (75), Expect = 0.38
Identities = 9/31 (29%), Positives = 16/31 (51%)
Query: 2 EEEEDEKKKKKKKKKEEEEKKQKKQKKKKKK 32
E + K KK + +K++K+K+K K
Sbjct: 382 APSEKKTGKPSKKVLAKRAEKKEKEKEKPKV 412
Score = 32.2 bits (74), Expect = 0.40
Identities = 9/30 (30%), Positives = 17/30 (56%)
Query: 8 KKKKKKKKKEEEEKKQKKQKKKKKKVNKVK 37
+KK+K+K++ + KK+ + K K K
Sbjct: 400 AEKKEKEKEKPKVKKRHRDTKNIGKRRKPS 429
Score = 28.8 bits (65), Expect = 5.2
Identities = 11/37 (29%), Positives = 19/37 (51%)
Query: 2 EEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNKVKP 38
+E + K +KK + KK ++ +KK+ K KP
Sbjct: 374 DELRPKTKAPSEKKTGKPSKKVLAKRAEKKEKEKEKP 410
>gnl|CDD|237753 PRK14552, PRK14552, C/D box methylation guide ribonucleoprotein
complex aNOP56 subunit; Provisional.
Length = 414
Score = 38.4 bits (90), Expect = 0.005
Identities = 18/30 (60%), Positives = 22/30 (73%)
Query: 3 EEEDEKKKKKKKKKEEEEKKQKKQKKKKKK 32
EE EK K KKK EE+K QK++KKKK+K
Sbjct: 373 EEIKEKYPKPPKKKREEKKPQKRKKKKKRK 402
Score = 36.5 bits (85), Expect = 0.019
Identities = 14/25 (56%), Positives = 21/25 (84%)
Query: 8 KKKKKKKKKEEEEKKQKKQKKKKKK 32
KKK+++KK ++ KK+KK+KKK KK
Sbjct: 383 PKKKREEKKPQKRKKKKKRKKKGKK 407
Score = 35.3 bits (82), Expect = 0.045
Identities = 12/25 (48%), Positives = 22/25 (88%)
Query: 8 KKKKKKKKKEEEEKKQKKQKKKKKK 32
K+++KK +K +++KK+KK+ KK+KK
Sbjct: 386 KREEKKPQKRKKKKKRKKKGKKRKK 410
Score = 34.9 bits (81), Expect = 0.065
Identities = 16/32 (50%), Positives = 25/32 (78%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKK 32
EE +E K KKK++E++ +K+KK+KK+KKK
Sbjct: 373 EEIKEKYPKPPKKKREEKKPQKRKKKKKRKKK 404
Score = 34.6 bits (80), Expect = 0.071
Identities = 12/26 (46%), Positives = 22/26 (84%)
Query: 7 EKKKKKKKKKEEEEKKQKKQKKKKKK 32
E+KK +K+KK+++ KK+ K++KKK +
Sbjct: 388 EEKKPQKRKKKKKRKKKGKKRKKKGR 413
Score = 34.6 bits (80), Expect = 0.075
Identities = 13/30 (43%), Positives = 24/30 (80%)
Query: 8 KKKKKKKKKEEEEKKQKKQKKKKKKVNKVK 37
KKK+++KK ++ +KK+K++KK KK+ K +
Sbjct: 384 KKKREEKKPQKRKKKKKRKKKGKKRKKKGR 413
Score = 34.6 bits (80), Expect = 0.090
Identities = 15/29 (51%), Positives = 24/29 (82%)
Query: 4 EEDEKKKKKKKKKEEEEKKQKKQKKKKKK 32
+ +EKK +K+KKK++ +KK KK+KKK +K
Sbjct: 386 KREEKKPQKRKKKKKRKKKGKKRKKKGRK 414
Score = 33.8 bits (78), Expect = 0.12
Identities = 12/30 (40%), Positives = 23/30 (76%)
Query: 8 KKKKKKKKKEEEEKKQKKQKKKKKKVNKVK 37
K KKK+++++ +K++KK+K+KKK + K
Sbjct: 381 KPPKKKREEKKPQKRKKKKKRKKKGKKRKK 410
Score = 33.0 bits (76), Expect = 0.28
Identities = 12/29 (41%), Positives = 24/29 (82%)
Query: 3 EEEDEKKKKKKKKKEEEEKKQKKQKKKKK 31
+ E++K +K+KKKK+ ++K +K++KK +K
Sbjct: 386 KREEKKPQKRKKKKKRKKKGKKRKKKGRK 414
Score = 32.6 bits (75), Expect = 0.30
Identities = 12/29 (41%), Positives = 23/29 (79%)
Query: 2 EEEEDEKKKKKKKKKEEEEKKQKKQKKKK 30
+ EE + +K+KKKKK +++ K++K+K +K
Sbjct: 386 KREEKKPQKRKKKKKRKKKGKKRKKKGRK 414
>gnl|CDD|219838 pfam08432, DUF1742, Fungal protein of unknown function (DUF1742).
This is a family of fungal proteins of unknown function.
Length = 182
Score = 37.4 bits (87), Expect = 0.005
Identities = 12/31 (38%), Positives = 21/31 (67%)
Query: 2 EEEEDEKKKKKKKKKEEEEKKQKKQKKKKKK 32
+++ KKKK K K ++++KK K +KK +K
Sbjct: 86 WKKKKSKKKKDKDKDKKDDKKDDKSEKKDEK 116
Score = 35.4 bits (82), Expect = 0.023
Identities = 16/34 (47%), Positives = 22/34 (64%)
Query: 2 EEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNK 35
EE++ K KKKK KK++++ K KK KK K K
Sbjct: 79 EEKQKWKWKKKKSKKKKDKDKDKKDDKKDDKSEK 112
Score = 34.3 bits (79), Expect = 0.056
Identities = 10/35 (28%), Positives = 23/35 (65%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNK 35
+++++D+ KK KK + E+K +K+ + K + + K
Sbjct: 93 KKKDKDKDKKDDKKDDKSEKKDEKEAEDKLEDLTK 127
Score = 33.9 bits (78), Expect = 0.078
Identities = 21/44 (47%), Positives = 25/44 (56%), Gaps = 6/44 (13%)
Query: 1 EEEEEDEKKKK------KKKKKEEEEKKQKKQKKKKKKVNKVKP 38
E E +KKKK +K KKE EEK++ K KKKK K K K
Sbjct: 55 AEYTEAKKKKKELAEEIEKVKKEYEEKQKWKWKKKKSKKKKDKD 98
Score = 33.5 bits (77), Expect = 0.088
Identities = 15/33 (45%), Positives = 23/33 (69%)
Query: 3 EEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNK 35
E E+++K K KKKK +++K + K KK KK +K
Sbjct: 77 EYEEKQKWKWKKKKSKKKKDKDKDKKDDKKDDK 109
Score = 33.5 bits (77), Expect = 0.10
Identities = 14/32 (43%), Positives = 23/32 (71%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKK 32
EE+++ + KKKK KKK++++K +K KK K
Sbjct: 79 EEKQKWKWKKKKSKKKKDKDKDKKDDKKDDKS 110
Score = 33.1 bits (76), Expect = 0.13
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 2 EEEEDEKKKKKKKKKEEEEKKQKKQKKKKKK 32
E EE +K K KKKK ++++ K K +K KK
Sbjct: 77 EYEEKQKWKWKKKKSKKKKDKDKDKKDDKKD 107
Score = 33.1 bits (76), Expect = 0.13
Identities = 10/34 (29%), Positives = 20/34 (58%)
Query: 4 EEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNKVK 37
+ +K KKKK K ++++ +K K +KK + +
Sbjct: 86 WKKKKSKKKKDKDKDKKDDKKDDKSEKKDEKEAE 119
Score = 32.0 bits (73), Expect = 0.29
Identities = 10/32 (31%), Positives = 22/32 (68%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKK 32
+++++ +K KK KK ++ EKK +K+ + K +
Sbjct: 92 KKKKDKDKDKKDDKKDDKSEKKDEKEAEDKLE 123
Score = 32.0 bits (73), Expect = 0.30
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 5 EDEKKKKKKKKKEEEEKKQKKQKKKKKKVNKVK 37
E E+K+K K KK++ +KK+ K K KK K
Sbjct: 77 EYEEKQKWKWKKKKSKKKKDKDKDKKDDKKDDK 109
Score = 32.0 bits (73), Expect = 0.35
Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
Query: 1 EEEEEDEKK---KKKKKKKEEEEKKQKKQKKKKKKVNKVK 37
EE E KK +K+K K ++++ K+KK K K KK +K
Sbjct: 68 AEEIEKVKKEYEEKQKWKWKKKKSKKKKDKDKDKKDDKKD 107
Score = 31.2 bits (71), Expect = 0.52
Identities = 8/37 (21%), Positives = 22/37 (59%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNKVK 37
+++++ + K +KK +KE E+K + K + ++ +
Sbjct: 101 KKDDKKDDKSEKKDEKEAEDKLEDLTKSYSETLSTLS 137
Score = 30.8 bits (70), Expect = 0.76
Identities = 10/32 (31%), Positives = 21/32 (65%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKK 32
+++++D+KK K +KK+E+E + K + K
Sbjct: 98 DKDKKDDKKDDKSEKKDEKEAEDKLEDLTKSY 129
Score = 30.0 bits (68), Expect = 1.3
Identities = 9/38 (23%), Positives = 26/38 (68%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNKVKP 38
++++ +KK K K KK++++ + ++K +K+ +K++
Sbjct: 87 KKKKSKKKKDKDKDKKDDKKDDKSEKKDEKEAEDKLED 124
Score = 30.0 bits (68), Expect = 1.5
Identities = 8/38 (21%), Positives = 19/38 (50%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNKVKP 38
+++++D+K K +KK E+E + + + K
Sbjct: 99 KDKKDDKKDDKSEKKDEKEAEDKLEDLTKSYSETLSTL 136
Score = 29.7 bits (67), Expect = 1.9
Identities = 16/37 (43%), Positives = 27/37 (72%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNKVK 37
+++E E+ +K KK+ EE++K + K+KK KKK +K K
Sbjct: 63 KKKELAEEIEKVKKEYEEKQKWKWKKKKSKKKKDKDK 99
>gnl|CDD|220648 pfam10243, MIP-T3, Microtubule-binding protein MIP-T3. This
protein, which interacts with both microtubules and
TRAF3 (tumour necrosis factor receptor-associated factor
3), is conserved from worms to humans. The N-terminal
region is the microtubule binding domain and is
well-conserved; the C-terminal 100 residues, also
well-conserved, constitute the coiled-coil region which
binds to TRAF3. The central region of the protein is
rich in lysine and glutamic acid and carries KKE motifs
which may also be necessary for tubulin-binding, but
this region is the least well-conserved.
Length = 506
Score = 38.3 bits (89), Expect = 0.005
Identities = 15/38 (39%), Positives = 28/38 (73%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNKVKP 38
EE+E+++ K++KKKKKE+ +++ K +K K++ K P
Sbjct: 106 EEKEKEQVKEEKKKKKEKPKEEPKDRKPKEEAKEKRPP 143
Score = 37.2 bits (86), Expect = 0.015
Identities = 12/40 (30%), Positives = 27/40 (67%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNKVKPVH 40
E+ +E+ K +K K++ +E+ ++K+K+K+KKV + +
Sbjct: 122 EKPKEEPKDRKPKEEAKEKRPPKEKEKEKEKKVEEPRDRE 161
Score = 36.8 bits (85), Expect = 0.018
Identities = 15/33 (45%), Positives = 26/33 (78%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKV 33
EEE+E E+ K++KKKK+E+ K++ K +K K++
Sbjct: 105 EEEKEKEQVKEEKKKKKEKPKEEPKDRKPKEEA 137
Score = 36.4 bits (84), Expect = 0.027
Identities = 17/41 (41%), Positives = 28/41 (68%), Gaps = 4/41 (9%)
Query: 1 EEEEEDEKKKKKKKKKEEEE----KKQKKQKKKKKKVNKVK 37
+E+ ++EKKKKK+K KEE + K++ K+K+ K+ K K
Sbjct: 110 KEQVKEEKKKKKEKPKEEPKDRKPKEEAKEKRPPKEKEKEK 150
Score = 34.9 bits (80), Expect = 0.075
Identities = 13/37 (35%), Positives = 28/37 (75%)
Query: 2 EEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNKVKP 38
EEE+++++ K++KKK++E+ K++ + +K K+ K K
Sbjct: 105 EEEKEKEQVKEEKKKKKEKPKEEPKDRKPKEEAKEKR 141
Score = 33.3 bits (76), Expect = 0.20
Identities = 16/45 (35%), Positives = 27/45 (60%), Gaps = 8/45 (17%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQ--------KKQKKKKKKVNKVK 37
+E+E++++KK ++ + EEEKK+ K+ KKK NK K
Sbjct: 144 KEKEKEKEKKVEEPRDREEEKKRERVRAKSRPKKPPKKKPPNKKK 188
Score = 32.6 bits (74), Expect = 0.40
Identities = 12/35 (34%), Positives = 27/35 (77%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNK 35
+E ++E K+++K+KE+ ++++KK+K+K K+ K
Sbjct: 95 AKEPKNESGKEEEKEKEQVKEEKKKKKEKPKEEPK 129
Score = 32.6 bits (74), Expect = 0.41
Identities = 8/38 (21%), Positives = 19/38 (50%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNKVKP 38
+ KK KKK ++++ +++K+++ VK
Sbjct: 169 VRAKSRPKKPPKKKPPNKKKEPPEEEKQRQAAREAVKG 206
Score = 32.2 bits (73), Expect = 0.56
Identities = 11/37 (29%), Positives = 24/37 (64%)
Query: 2 EEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNKVKP 38
+E EK+K+KK ++ + +++KK+++ + K KP
Sbjct: 142 PPKEKEKEKEKKVEEPRDREEEKKRERVRAKSRPKKP 178
Score = 31.4 bits (71), Expect = 0.84
Identities = 10/32 (31%), Positives = 25/32 (78%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKK 32
+E+ ++E K +K K++ +E++ K+++K+K+K
Sbjct: 121 KEKPKEEPKDRKPKEEAKEKRPPKEKEKEKEK 152
Score = 31.4 bits (71), Expect = 0.89
Identities = 13/31 (41%), Positives = 21/31 (67%)
Query: 8 KKKKKKKKKEEEEKKQKKQKKKKKKVNKVKP 38
K+ K + +EE+K+K+Q K++KK K KP
Sbjct: 94 PAKEPKNESGKEEEKEKEQVKEEKKKKKEKP 124
Score = 31.0 bits (70), Expect = 1.0
Identities = 12/38 (31%), Positives = 27/38 (71%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNKVKP 38
+ E ++++K+K++ +EE+KK+K++ K++ K K K
Sbjct: 98 PKNESGKEEEKEKEQVKEEKKKKKEKPKEEPKDRKPKE 135
Score = 30.6 bits (69), Expect = 1.3
Identities = 9/38 (23%), Positives = 29/38 (76%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNKVKP 38
+EE ++++ K+K+K++E++ ++ + ++++KK +V+
Sbjct: 134 KEEAKEKRPPKEKEKEKEKKVEEPRDREEEKKRERVRA 171
Score = 30.6 bits (69), Expect = 1.6
Identities = 12/38 (31%), Positives = 28/38 (73%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNKVKP 38
+E + + K+++K+K++ +E+K+KK++K K++ KP
Sbjct: 96 KEPKNESGKEEEKEKEQVKEEKKKKKEKPKEEPKDRKP 133
Score = 29.5 bits (66), Expect = 3.4
Identities = 10/37 (27%), Positives = 27/37 (72%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNKVK 37
+EE+++K++ K++K+++++K K++ K +K + K
Sbjct: 102 SGKEEEKEKEQVKEEKKKKKEKPKEEPKDRKPKEEAK 138
Score = 28.3 bits (63), Expect = 7.3
Identities = 11/50 (22%), Positives = 23/50 (46%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNKVKPVHIIFYRDGVSE 50
+ + KKK K++E +++KQ++ ++ K KP + E
Sbjct: 171 AKSRPKKPPKKKPPNKKKEPPEEEKQRQAAREAVKGKPEEPDVNEEREKE 220
Score = 28.3 bits (63), Expect = 8.2
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 3 EEEDEKKKKKKKKKEEEEKKQKKQKKKKKKV 33
+ E+EKK+++ + K +K KK+ KKK
Sbjct: 159 DREEEKKRERVRAKSRPKKPPKKKPPNKKKE 189
>gnl|CDD|218188 pfam04641, Rtf2, Replication termination factor 2. It is vital for
effective cell-replication that replication is not
stalled at any point by, for instance, damaged bases.
Rtf2 stabilizes the replication fork stalled at the
site-specific replication barrier RTS1 by preventing
replication restart until completion of DNA synthesis by
a converging replication fork initiated at a flanking
origin. The RTS1 element terminates replication forks
that are moving in the cen2-distal direction while
allowing forks moving in the cen2-proximal direction to
pass through the region. Rtf2 contains a C2HC2 motif
related to the C3HC4 RING-finger motif, and would appear
to fold up, creating a RING finger-like structure but
forming only one functional Zn2+ ion-binding site.
Length = 254
Score = 37.7 bits (88), Expect = 0.005
Identities = 14/32 (43%), Positives = 22/32 (68%)
Query: 4 EEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNK 35
EE+ + K + ++E +KK+KK+KKK KK N
Sbjct: 166 EEEVELLKARLEEERAKKKKKKKKKKTKKNNA 197
Score = 36.9 bits (86), Expect = 0.010
Identities = 13/34 (38%), Positives = 21/34 (61%)
Query: 3 EEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNKV 36
EEE E K + +++ ++KK+KK+KK KK
Sbjct: 166 EEEVELLKARLEEERAKKKKKKKKKKTKKNNATG 199
Score = 30.0 bits (68), Expect = 1.6
Identities = 11/36 (30%), Positives = 22/36 (61%)
Query: 2 EEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNKVK 37
EEE + K + ++++ +++KK+KK+K KK
Sbjct: 166 EEEVELLKARLEEERAKKKKKKKKKKTKKNNATGSS 201
Score = 30.0 bits (68), Expect = 1.6
Identities = 9/37 (24%), Positives = 15/37 (40%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNKVK 37
E ++ +KKKKKK KK + ++
Sbjct: 179 ERAKKKKKKKKKKTKKNNATGSSAEATVSSAVPTELS 215
Score = 29.6 bits (67), Expect = 2.4
Identities = 11/35 (31%), Positives = 15/35 (42%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNK 35
EE + +KKKKKKK K+ + V
Sbjct: 178 EERAKKKKKKKKKKTKKNNATGSSAEATVSSAVPT 212
>gnl|CDD|221275 pfam11861, DUF3381, Domain of unknown function (DUF3381). This
domain is functionally uncharacterized. This domain is
found in eukaryotes. This presumed domain is typically
between 156 to 174 amino acids in length. This domain is
found associated with pfam07780, pfam01728.
Length = 154
Score = 36.9 bits (86), Expect = 0.005
Identities = 10/30 (33%), Positives = 22/30 (73%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKK 30
EEE+ DE +K+ K + E++++ ++K+K+
Sbjct: 116 EEEQIDELLEKELAKLKREKRRENERKQKE 145
Score = 36.5 bits (85), Expect = 0.007
Identities = 9/34 (26%), Positives = 24/34 (70%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVN 34
+EEE+ ++ +K+ K + EK+++ ++K+K+ +
Sbjct: 115 DEEEQIDELLEKELAKLKREKRRENERKQKEILK 148
Score = 35.3 bits (82), Expect = 0.017
Identities = 13/34 (38%), Positives = 22/34 (64%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVN 34
+E E E K K++K+ E E+KQK+ K++ K+
Sbjct: 121 DELLEKELAKLKREKRRENERKQKEILKEQMKML 154
Score = 35.0 bits (81), Expect = 0.024
Identities = 14/42 (33%), Positives = 26/42 (61%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNKVKPVHII 42
EEE E E+ ++++ E EK+ K K++K++ N+ K I+
Sbjct: 106 EEEVEVEELDEEEQIDELLEKELAKLKREKRRENERKQKEIL 147
Score = 32.6 bits (75), Expect = 0.14
Identities = 9/37 (24%), Positives = 25/37 (67%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNKVK 37
EE +E+E+ + +K+ + K++K+++ ++K+ +K
Sbjct: 112 EELDEEEQIDELLEKELAKLKREKRRENERKQKEILK 148
>gnl|CDD|222447 pfam13904, DUF4207, Domain of unknown function (DUF4207). This
family is found in eukaryotes; it has several conserved
tryptophan residues. The function is not known.
Length = 261
Score = 37.8 bits (88), Expect = 0.006
Identities = 17/43 (39%), Positives = 32/43 (74%), Gaps = 4/43 (9%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKK---KKV-NKVKPV 39
+++ E+E++K++KK++EEEE+KQK ++ + K V + KPV
Sbjct: 196 QQKREEERRKQRKKQQEEEERKQKAEEAWQKWMKNVKQRPKPV 238
Score = 31.6 bits (72), Expect = 0.55
Identities = 10/29 (34%), Positives = 25/29 (86%)
Query: 4 EEDEKKKKKKKKKEEEEKKQKKQKKKKKK 32
+E E KK K+++++ EE+++K++KK++++
Sbjct: 185 QEWELKKLKQQQQKREEERRKQRKKQQEE 213
Score = 30.1 bits (68), Expect = 1.6
Identities = 11/29 (37%), Positives = 25/29 (86%)
Query: 2 EEEEDEKKKKKKKKKEEEEKKQKKQKKKK 30
+E E +K K++++K+EEE +KQ+K+++++
Sbjct: 185 QEWELKKLKQQQQKREEERRKQRKKQQEE 213
Score = 30.1 bits (68), Expect = 1.9
Identities = 14/37 (37%), Positives = 22/37 (59%)
Query: 2 EEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNKVKP 38
E EE E +++ K+K EE +QK Q+ K++ K K
Sbjct: 119 EREEAELRQRLAKEKYEEWCRQKAQQAAKQRTPKHKK 155
Score = 28.2 bits (63), Expect = 6.5
Identities = 10/30 (33%), Positives = 25/30 (83%)
Query: 8 KKKKKKKKKEEEEKKQKKQKKKKKKVNKVK 37
KK K++++K EEE++++++K+++++ K K
Sbjct: 190 KKLKQQQQKREEERRKQRKKQQEEEERKQK 219
Score = 28.2 bits (63), Expect = 7.9
Identities = 6/26 (23%), Positives = 24/26 (92%)
Query: 7 EKKKKKKKKKEEEEKKQKKQKKKKKK 32
++++K+++++ ++ KKQ++++++K+K
Sbjct: 194 QQQQKREEERRKQRKKQQEEEERKQK 219
>gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit;
Provisional.
Length = 482
Score = 38.4 bits (90), Expect = 0.006
Identities = 13/37 (35%), Positives = 28/37 (75%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNKVK 37
EEE+ EKKKK K++EE+++++++KK+++ + +
Sbjct: 423 REEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEE 459
Score = 38.0 bits (89), Expect = 0.008
Identities = 13/38 (34%), Positives = 28/38 (73%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNKVKP 38
E++ +E+KK+KKKK +KK+++++++K+K + K
Sbjct: 419 AEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKE 456
Score = 37.2 bits (87), Expect = 0.011
Identities = 15/39 (38%), Positives = 30/39 (76%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNKVKPV 39
EEE++++KKK KK+EEE++++K+KK+++K + +
Sbjct: 424 EEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEA 462
Score = 37.2 bits (87), Expect = 0.014
Identities = 13/41 (31%), Positives = 29/41 (70%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNKVKPVHI 41
E++ E+EKK+KKKK ++K+++++++K+KK + +
Sbjct: 420 EKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEE 460
Score = 34.5 bits (80), Expect = 0.092
Identities = 15/32 (46%), Positives = 31/32 (96%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKK 32
EEEEE+++KK+++K++EEEE +++K+++++KK
Sbjct: 442 EEEEEEKEKKEEEKEEEEEEAEEEKEEEEEKK 473
Score = 34.5 bits (80), Expect = 0.100
Identities = 12/38 (31%), Positives = 29/38 (76%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNKVKP 38
++E++ + KKK++EEEE+K+KK+++K+++ + +
Sbjct: 427 KKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAEE 464
Score = 34.1 bits (79), Expect = 0.11
Identities = 9/37 (24%), Positives = 24/37 (64%)
Query: 3 EEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNKVKPV 39
E +KK++++KKE+++K +KK++++ + +
Sbjct: 415 IVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKK 451
Score = 34.1 bits (79), Expect = 0.12
Identities = 16/32 (50%), Positives = 30/32 (93%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKK 32
EEEEE EKK+++K+++EEE +++K+++++KKK
Sbjct: 443 EEEEEKEKKEEEKEEEEEEAEEEKEEEEEKKK 474
Score = 33.4 bits (77), Expect = 0.19
Identities = 13/32 (40%), Positives = 31/32 (96%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKK 32
EEEE+++K+++K++++EE E++++++++KKKK
Sbjct: 444 EEEEKEKKEEEKEEEEEEAEEEKEEEEEKKKK 475
Score = 33.4 bits (77), Expect = 0.19
Identities = 15/32 (46%), Positives = 31/32 (96%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKK 32
EEEEE+EK+KK+++K+EEEE+ +++++++++K
Sbjct: 441 EEEEEEEKEKKEEEKEEEEEEAEEEKEEEEEK 472
Score = 33.4 bits (77), Expect = 0.22
Identities = 11/38 (28%), Positives = 22/38 (57%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNKVKP 38
++ + KK +K +K+ EE+K++K+KK K +
Sbjct: 406 KKATKKIKKIVEKAEKKREEEKKEKKKKAFAGKKKEEE 443
Score = 33.0 bits (76), Expect = 0.24
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 8 KKKKKKKKKEEEEKKQKKQKKKKKKVNKVKP 38
K +K +KK EEEKK+KK+K K + +
Sbjct: 414 KIVEKAEKKREEEKKEKKKKAFAGKKKEEEE 444
Score = 31.8 bits (73), Expect = 0.60
Identities = 11/38 (28%), Positives = 24/38 (63%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNKVKP 38
++ + +K +KK++EE+++K+KK KKK + +
Sbjct: 409 TKKIKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEE 446
Score = 31.4 bits (72), Expect = 0.87
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 7 EKKKKKKKKKEEEEKKQKKQKKKKKKVNKVKPV 39
+ KK KK E+ EKK++++KK+KKK
Sbjct: 407 KATKKIKKIVEKAEKKREEEKKEKKKKAFAGKK 439
Score = 31.0 bits (71), Expect = 0.99
Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 4/41 (9%)
Query: 1 EEEEE----DEKKKKKKKKKEEEEKKQKKQKKKKKKVNKVK 37
EEE E +K KK KK E+ +K+++++KK+KK
Sbjct: 396 EEEIEFLTGSKKATKKIKKIVEKAEKKREEEKKEKKKKAFA 436
Score = 30.3 bits (69), Expect = 2.0
Identities = 9/38 (23%), Positives = 30/38 (78%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNKVKP 38
E++++ KKK++++EEE++K++++K+++++ + +
Sbjct: 429 EKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAEEEK 466
Score = 29.9 bits (68), Expect = 2.7
Identities = 13/27 (48%), Positives = 25/27 (92%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQK 27
+EEE++E++++ +++KEEEE+K+KKQ
Sbjct: 451 KEEEKEEEEEEAEEEKEEEEEKKKKQA 477
>gnl|CDD|221185 pfam11719, Drc1-Sld2, DNA replication and checkpoint protein.
Genome duplication is precisely regulated by
cyclin-dependent kinases CDKs, which bring about the
onset of S phase by activating replication origins and
then prevent relicensing of origins until mitosis is
completed. The optimum sequence motif for CDK
phosphorylation is S/T-P-K/R-K/R, and Drc1-Sld2 is found
to have at least 11 potential phosphorylation sites.
Drc1 is required for DNA synthesis and S-M replication
checkpoint control. Drc1 associates with Cdc2 and is
phosphorylated at the onset of S phase when Cdc2 is
activated. Thus Cdc2 promotes DNA replication by
phosphorylating Drc1 and regulating its association with
Cut5. Sld2 and Sld3 represent the minimal set of S-CDK
substrates required for DNA replication.
Length = 397
Score = 37.9 bits (88), Expect = 0.007
Identities = 17/39 (43%), Positives = 26/39 (66%), Gaps = 2/39 (5%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNKVKPV 39
+ED++ + ++ KEE EKKQK +KK +K+ KV PV
Sbjct: 336 GGIDEDDEDEDDEESKEEVEKKQKVKKKPRKR--KVNPV 372
>gnl|CDD|218148 pfam04557, tRNA_synt_1c_R2, Glutaminyl-tRNA synthetase,
non-specific RNA binding region part 2. This is a
region found N terminal to the catalytic domain of
glutaminyl-tRNA synthetase (EC 6.1.1.18) in eukaryotes
but not in Escherichia coli. This region is thought to
bind RNA in a non-specific manner, enhancing
interactions between the tRNA and enzyme, but is not
essential for enzyme function.
Length = 83
Score = 35.0 bits (81), Expect = 0.008
Identities = 15/35 (42%), Positives = 17/35 (48%)
Query: 4 EEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNKVKP 38
E D KKKKKKKK++ E K KK V
Sbjct: 19 EADLVKKKKKKKKKKAEDTAATAKAKKATAEDVSE 53
Score = 28.5 bits (64), Expect = 1.4
Identities = 10/34 (29%), Positives = 16/34 (47%)
Query: 6 DEKKKKKKKKKEEEEKKQKKQKKKKKKVNKVKPV 39
E KKKKK++++K + K K + V
Sbjct: 18 TEADLVKKKKKKKKKKAEDTAATAKAKKATAEDV 51
>gnl|CDD|219621 pfam07890, Rrp15p, Rrp15p. Rrp15p is required for the formation
of 60S ribosomal subunits.
Length = 132
Score = 35.8 bits (83), Expect = 0.009
Identities = 11/33 (33%), Positives = 21/33 (63%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKV 33
+++ + EK +KK K++ EK+Q +K + K V
Sbjct: 34 KKKLKSEKLEKKAKRQLRAEKRQALEKGRVKPV 66
Score = 32.3 bits (74), Expect = 0.14
Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 7/39 (17%)
Query: 8 KKKKKKKKKEEEEKKQKK-------QKKKKKKVNKVKPV 39
KK K KKK + EK +KK +K++ + +VKPV
Sbjct: 28 KKLLKAKKKLKSEKLEKKAKRQLRAEKRQALEKGRVKPV 66
Score = 27.3 bits (61), Expect = 7.3
Identities = 9/29 (31%), Positives = 18/29 (62%)
Query: 9 KKKKKKKKEEEEKKQKKQKKKKKKVNKVK 37
+ KK K +++ K +K +KK K+++ K
Sbjct: 26 RSKKLLKAKKKLKSEKLEKKAKRQLRAEK 54
>gnl|CDD|219547 pfam07741, BRF1, Brf1-like TBP-binding domain. This region
covers both the Brf homology II and III regions. This
region is involved in binding TATA binding protein.
Length = 95
Score = 34.9 bits (81), Expect = 0.010
Identities = 11/34 (32%), Positives = 22/34 (64%)
Query: 5 EDEKKKKKKKKKEEEEKKQKKQKKKKKKVNKVKP 38
E++++K+ K+K +E KK+KK+K K + +
Sbjct: 30 EEQEEKELKQKADEGNNSGKKKKKRKAKKKRDEA 63
Score = 34.2 bits (79), Expect = 0.017
Identities = 14/36 (38%), Positives = 24/36 (66%)
Query: 3 EEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNKVKP 38
EE++EK+ K+K + K+KK++K KKK ++ P
Sbjct: 30 EEQEEKELKQKADEGNNSGKKKKKRKAKKKRDEAGP 65
Score = 32.2 bits (74), Expect = 0.076
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 4 EEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNKVKPV 39
EE E+K+ K+K E +KK+K+K KK
Sbjct: 30 EEQEEKELKQKADEGNNSGKKKKKRKAKKKRDEAGP 65
Score = 28.4 bits (64), Expect = 2.1
Identities = 9/33 (27%), Positives = 20/33 (60%)
Query: 8 KKKKKKKKKEEEEKKQKKQKKKKKKVNKVKPVH 40
+++++K+ K++ ++ KKKKK+ K K
Sbjct: 30 EEQEEKELKQKADEGNNSGKKKKKRKAKKKRDE 62
>gnl|CDD|219655 pfam07946, DUF1682, Protein of unknown function (DUF1682). The
members of this family are all hypothetical eukaryotic
proteins of unknown function. One member is described as
being an adipocyte-specific protein, but no evidence of
this was found.
Length = 322
Score = 37.2 bits (87), Expect = 0.010
Identities = 17/40 (42%), Positives = 26/40 (65%), Gaps = 5/40 (12%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKK-----QKKKKKKVNK 35
EE +E+ ++KK++KKKEE E K K Q+K ++K K
Sbjct: 278 EERQEEAQEKKEEKKKEEREAKLAKLSPEEQRKLEEKERK 317
Score = 36.8 bits (86), Expect = 0.015
Identities = 15/43 (34%), Positives = 28/43 (65%), Gaps = 8/43 (18%)
Query: 1 EEEEEDEKKKKKKKKKEEEE------KKQKK--QKKKKKKVNK 35
+EE EKK++KKK++ E + ++Q+K +K++KK+ K
Sbjct: 280 RQEEAQEKKEEKKKEEREAKLAKLSPEEQRKLEEKERKKQARK 322
Score = 36.1 bits (84), Expect = 0.027
Identities = 11/31 (35%), Positives = 26/31 (83%)
Query: 2 EEEEDEKKKKKKKKKEEEEKKQKKQKKKKKK 32
EEEE++ K +++++EE +++K++KKK+++
Sbjct: 266 EEEEEKILKAAEEERQEEAQEKKEEKKKEER 296
Score = 34.5 bits (80), Expect = 0.076
Identities = 15/40 (37%), Positives = 30/40 (75%), Gaps = 2/40 (5%)
Query: 1 EEEEEDEKKKKKKKKKEE--EEKKQKKQKKKKKKVNKVKP 38
EEEEE K +++++EE E+K++KK+++++ K+ K+ P
Sbjct: 266 EEEEEKILKAAEEERQEEAQEKKEEKKKEEREAKLAKLSP 305
>gnl|CDD|215214 PLN02381, PLN02381, valyl-tRNA synthetase.
Length = 1066
Score = 38.0 bits (88), Expect = 0.010
Identities = 18/33 (54%), Positives = 24/33 (72%), Gaps = 1/33 (3%)
Query: 2 EEEEDEKKKKKKKKKEEEEKKQK-KQKKKKKKV 33
EEE + KKKK++K KE+E KK K QK+ K K+
Sbjct: 15 EEELERKKKKEEKAKEKELKKLKAAQKEAKAKL 47
Score = 35.6 bits (82), Expect = 0.045
Identities = 14/35 (40%), Positives = 24/35 (68%), Gaps = 2/35 (5%)
Query: 1 EEEEEDEKKKKKKKKKEEE--EKKQKKQKKKKKKV 33
E++ E++ ++KKKKEE+ EK+ KK K +K+
Sbjct: 9 EKKILTEEELERKKKKEEKAKEKELKKLKAAQKEA 43
Score = 29.9 bits (67), Expect = 2.8
Identities = 14/33 (42%), Positives = 24/33 (72%)
Query: 5 EDEKKKKKKKKKEEEEKKQKKQKKKKKKVNKVK 37
E E +KK ++E E KK+K++K K+K++ K+K
Sbjct: 5 ESEAEKKILTEEELERKKKKEEKAKEKELKKLK 37
Score = 28.7 bits (64), Expect = 5.9
Identities = 13/38 (34%), Positives = 18/38 (47%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNKVKP 38
E+ +E E KK K +KE + K Q +Q V K
Sbjct: 26 EKAKEKELKKLKAAQKEAKAKLQAQQASDGTNVPKKSE 63
>gnl|CDD|185429 PTZ00074, PTZ00074, 60S ribosomal protein L34; Provisional.
Length = 135
Score = 35.4 bits (82), Expect = 0.013
Identities = 15/29 (51%), Positives = 22/29 (75%)
Query: 7 EKKKKKKKKKEEEEKKQKKQKKKKKKVNK 35
EK K+KK+KK++++KK+KK KK K K
Sbjct: 107 EKAKQKKQKKKKKKKKKKKTSKKAAKKKK 135
Score = 34.3 bits (79), Expect = 0.034
Identities = 15/30 (50%), Positives = 23/30 (76%)
Query: 8 KKKKKKKKKEEEEKKQKKQKKKKKKVNKVK 37
K+K K+KK++++KK+KK+KK KK K K
Sbjct: 105 LKEKAKQKKQKKKKKKKKKKKTSKKAAKKK 134
Score = 34.3 bits (79), Expect = 0.036
Identities = 16/37 (43%), Positives = 26/37 (70%)
Query: 2 EEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNKVKP 38
EE++ K+ K+K K++++KK+KK+KKKKK K
Sbjct: 96 EEQKIVKQVLKEKAKQKKQKKKKKKKKKKKTSKKAAK 132
Score = 33.5 bits (77), Expect = 0.069
Identities = 14/29 (48%), Positives = 23/29 (79%)
Query: 4 EEDEKKKKKKKKKEEEEKKQKKQKKKKKK 32
+E K+KK+KKKK++++KK+ +K KKK
Sbjct: 106 KEKAKQKKQKKKKKKKKKKKTSKKAAKKK 134
Score = 32.7 bits (75), Expect = 0.11
Identities = 15/30 (50%), Positives = 25/30 (83%)
Query: 3 EEEDEKKKKKKKKKEEEEKKQKKQKKKKKK 32
+E+ ++KK+KKKKK++++KK K+ KKKK
Sbjct: 106 KEKAKQKKQKKKKKKKKKKKTSKKAAKKKK 135
Score = 32.7 bits (75), Expect = 0.11
Identities = 13/32 (40%), Positives = 22/32 (68%)
Query: 7 EKKKKKKKKKEEEEKKQKKQKKKKKKVNKVKP 38
+ K+K K+K++++KK+KK+KKK K K
Sbjct: 103 QVLKEKAKQKKQKKKKKKKKKKKTSKKAAKKK 134
Score = 32.0 bits (73), Expect = 0.18
Identities = 16/30 (53%), Positives = 24/30 (80%)
Query: 2 EEEEDEKKKKKKKKKEEEEKKQKKQKKKKK 31
+E+ +KK+KKKKKK++++K KK KKKK
Sbjct: 106 KEKAKQKKQKKKKKKKKKKKTSKKAAKKKK 135
Score = 32.0 bits (73), Expect = 0.20
Identities = 16/35 (45%), Positives = 24/35 (68%)
Query: 5 EDEKKKKKKKKKEEEEKKQKKQKKKKKKVNKVKPV 39
E++K K+ K++ ++KKQKK+KKKKKK K
Sbjct: 96 EEQKIVKQVLKEKAKQKKQKKKKKKKKKKKTSKKA 130
Score = 32.0 bits (73), Expect = 0.22
Identities = 14/30 (46%), Positives = 23/30 (76%)
Query: 8 KKKKKKKKKEEEEKKQKKQKKKKKKVNKVK 37
K+K K+KK+++++KK+KK+K KK K K
Sbjct: 106 KEKAKQKKQKKKKKKKKKKKTSKKAAKKKK 135
Score = 30.0 bits (68), Expect = 1.1
Identities = 13/27 (48%), Positives = 21/27 (77%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQK 27
++++ +KKKKKKKKK+ +K KK+K
Sbjct: 109 AKQKKQKKKKKKKKKKKTSKKAAKKKK 135
>gnl|CDD|115057 pfam06375, BLVR, Bovine leukaemia virus receptor (BLVR). This
family consists of several bovine specific leukaemia
virus receptors which are thought to function as
transmembrane proteins, although their exact function is
unknown.
Length = 561
Score = 37.4 bits (86), Expect = 0.014
Identities = 19/39 (48%), Positives = 27/39 (69%), Gaps = 4/39 (10%)
Query: 3 EEED----EKKKKKKKKKEEEEKKQKKQKKKKKKVNKVK 37
E+ D EKK KK KKKE++EK++++ K KKK+V K
Sbjct: 188 EKGDVPAVEKKSKKPKKKEKKEKEKERDKDKKKEVEGFK 226
Score = 32.7 bits (74), Expect = 0.31
Identities = 13/46 (28%), Positives = 26/46 (56%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNKVKPVHIIFYRD 46
E+ + +KK KK K++E+K+++K++ K KK ++ D
Sbjct: 188 EKGDVPAVEKKSKKPKKKEKKEKEKERDKDKKKEVEGFKSLLLALD 233
Score = 31.2 bits (70), Expect = 0.91
Identities = 15/31 (48%), Positives = 23/31 (74%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKK 31
EE ++ K KKKK++KE+EEKK+KK+ +
Sbjct: 272 EETKKSPKHKKKKQRKEKEEKKKKKKHHHHR 302
Score = 29.6 bits (66), Expect = 3.0
Identities = 16/31 (51%), Positives = 22/31 (70%)
Query: 2 EEEEDEKKKKKKKKKEEEEKKQKKQKKKKKK 32
E EE +K K KKKK+ +EK++KK+KKK
Sbjct: 270 EAEETKKSPKHKKKKQRKEKEEKKKKKKHHH 300
Score = 28.9 bits (64), Expect = 5.1
Identities = 8/30 (26%), Positives = 22/30 (73%)
Query: 3 EEEDEKKKKKKKKKEEEEKKQKKQKKKKKK 32
EEE +++ +K K E++K++K+++ +++
Sbjct: 85 EEERRHRQRLEKDKREKKKREKEKRGRRRH 114
Score = 28.5 bits (63), Expect = 6.7
Identities = 15/36 (41%), Positives = 26/36 (72%)
Query: 5 EDEKKKKKKKKKEEEEKKQKKQKKKKKKVNKVKPVH 40
E E+ KK K K+++++K+K++KKKKKK + + H
Sbjct: 270 EAEETKKSPKHKKKKQRKEKEEKKKKKKHHHHRCHH 305
Score = 28.5 bits (63), Expect = 7.1
Identities = 11/31 (35%), Positives = 21/31 (67%), Gaps = 4/31 (12%)
Query: 1 EEE----EEDEKKKKKKKKKEEEEKKQKKQK 27
EEE + EK K++KKK+E+E++ +++
Sbjct: 85 EEERRHRQRLEKDKREKKKREKEKRGRRRHH 115
>gnl|CDD|221028 pfam11208, DUF2992, Protein of unknown function (DUF2992). This
bacterial family of proteins has no known function.
However, the cis-regulatory yjdF motif, just upstream
from the gene encoding the proteins for this family, is
a small non-coding RNA, Rfam:RF01764. The yjdF motif is
found in many Firmicutes, including Bacillus subtilis.
In most cases, it resides in potential 5' UTRs of
homologues of the yjdF gene whose function is unknown.
However, in Streptococcus thermophilus, a yjdF RNA motif
is associated with an operon whose protein products
synthesise nicotinamide adenine dinucleotide (NAD+).
Also, the S. thermophilus yjdF RNA lacks typical yjdF
motif consensus features downstream of and including the
P4 stem. Thus, if yjdF RNAs are riboswitch aptamers, the
S. thermophilus RNAs might sense a distinct compound
that structurally resembles the ligand bound by other
yjdF RNAs. On the ohter hand, perhaps these RNAs have an
alternative solution forming a similar binding site, as
is observed with some SAM riboswitches.
Length = 132
Score = 35.3 bits (82), Expect = 0.015
Identities = 17/28 (60%), Positives = 23/28 (82%), Gaps = 2/28 (7%)
Query: 7 EKKKKKKKKKEEEEKK--QKKQKKKKKK 32
EKKK+ K+KKEEE+++ Q KQ+KKK K
Sbjct: 101 EKKKRSKEKKEEEKERKRQLKQQKKKAK 128
Score = 29.1 bits (66), Expect = 2.0
Identities = 12/32 (37%), Positives = 27/32 (84%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKK 32
E E ++++KKK+ K+++EE+K++K++ K++K
Sbjct: 93 LEHERNKQEKKKRSKEKKEEEKERKRQLKQQK 124
>gnl|CDD|218482 pfam05178, Kri1, KRI1-like family. The yeast member of this
family (Kri1p) is found to be required for 40S ribosome
biogenesis in the nucleolus.
Length = 99
Score = 34.5 bits (80), Expect = 0.016
Identities = 12/34 (35%), Positives = 25/34 (73%), Gaps = 2/34 (5%)
Query: 6 DEKKKKKKKKKEEEEKKQKKQKKKK--KKVNKVK 37
E+K+++K ++EEE K+ K K+++ +K+ K+K
Sbjct: 1 KERKEEEKAQREEELKRLKNLKREEIEEKLEKIK 34
Score = 32.2 bits (74), Expect = 0.11
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKK 28
+ + E+E K+ K K+EE E+K +K KK
Sbjct: 8 KAQREEELKRLKNLKREEIEEKLEKIKK 35
>gnl|CDD|220252 pfam09468, RNase_H2-Ydr279, Ydr279p protein family (RNase H2
complex component). RNases H are enzymes that
specifically hydrolyse RNA when annealed to a
complementary DNA and are present in all living
organisms. In yeast RNase H2 is composed of a complex of
three proteins (Rnh2Ap, Ydr279p and Ylr154p), this
family represents the homologues of Ydr279p. It is not
known whether non yeast proteins in this family fulfil
the same function.
Length = 287
Score = 36.5 bits (85), Expect = 0.018
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 4/40 (10%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQK----KQKKKKKKVNKV 36
E+ E E + +KK+K +EE KK+K K K KKV
Sbjct: 239 EDVEAAESRAEKKRKSKEEIKKKKPKESKGVKALKKVVAK 278
Score = 35.4 bits (82), Expect = 0.041
Identities = 14/37 (37%), Positives = 22/37 (59%)
Query: 3 EEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNKVKPV 39
E + + +KK+K KEE +KK+ K+ K K + KV
Sbjct: 242 EAAESRAEKKRKSKEEIKKKKPKESKGVKALKKVVAK 278
Score = 33.8 bits (78), Expect = 0.10
Identities = 15/39 (38%), Positives = 23/39 (58%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNKVKPV 39
EE+ E + + +KK+K +EE K+KK K+ K K V
Sbjct: 238 EEDVEAAESRAEKKRKSKEEIKKKKPKESKGVKALKKVV 276
Score = 32.3 bits (74), Expect = 0.38
Identities = 11/32 (34%), Positives = 16/32 (50%)
Query: 4 EEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNK 35
E+ K K++ KKK+ +E K K KK
Sbjct: 249 EKKRKSKEEIKKKKPKESKGVKALKKVVAKGM 280
Score = 29.2 bits (66), Expect = 3.7
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKK 31
+ +E+ KKKK K+ K + K+ K KK
Sbjct: 252 RKSKEEIKKKKPKESKGVKALKKVVAKGMKK 282
Score = 27.7 bits (62), Expect = 9.7
Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Query: 2 EEEEDEKKKKKKKKKEEEEKKQKKQKKKK--KKVNKVKPV 39
E EED + + + +K+ + K++ K+KK K K V +K V
Sbjct: 236 ETEEDVEAAESRAEKKRKSKEEIKKKKPKESKGVKALKKV 275
>gnl|CDD|226894 COG4499, COG4499, Predicted membrane protein [Function unknown].
Length = 434
Score = 36.7 bits (85), Expect = 0.018
Identities = 12/32 (37%), Positives = 26/32 (81%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKK 32
+EE+ +++ +KK+K++ +E K+K+QK ++KK
Sbjct: 403 KEEKLKQEENEKKQKEQADEDKEKRQKDERKK 434
Score = 34.8 bits (80), Expect = 0.079
Identities = 15/35 (42%), Positives = 23/35 (65%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNK 35
EE + K K++K K+EE EKKQK+Q + K+ +
Sbjct: 394 ASEEAEAKAKEEKLKQEENEKKQKEQADEDKEKRQ 428
Score = 34.0 bits (78), Expect = 0.11
Identities = 9/35 (25%), Positives = 25/35 (71%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNK 35
E + ++EK K+++ +K+++E+ + ++K++K K
Sbjct: 399 EAKAKEEKLKQEENEKKQKEQADEDKEKRQKDERK 433
Score = 30.9 bits (70), Expect = 1.3
Identities = 13/36 (36%), Positives = 23/36 (63%)
Query: 2 EEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNKVK 37
EE E K K++K K+EE +K++K++ + K + K
Sbjct: 394 ASEEAEAKAKEEKLKQEENEKKQKEQADEDKEKRQK 429
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional.
Length = 2084
Score = 37.0 bits (85), Expect = 0.018
Identities = 17/37 (45%), Positives = 28/37 (75%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNKVK 37
++E E+ KK ++ KKKE EEKK+ ++ KK ++ NK+K
Sbjct: 1695 KKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIK 1731
Score = 36.3 bits (83), Expect = 0.034
Identities = 17/37 (45%), Positives = 24/37 (64%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNKVK 37
++ EEDEKK + KKE EE K+ ++ KKK+ K K
Sbjct: 1681 KKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKK 1717
Score = 36.3 bits (83), Expect = 0.036
Identities = 17/37 (45%), Positives = 29/37 (78%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNKVK 37
++ EE++KK ++ KKKE EEKK+ ++ KK ++ NK+K
Sbjct: 1626 KKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIK 1662
Score = 35.1 bits (80), Expect = 0.076
Identities = 17/41 (41%), Positives = 27/41 (65%), Gaps = 4/41 (9%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKK----KKVNKVK 37
++ EED+KK ++ KK EE+EKK + KK+ KK ++K
Sbjct: 1668 KKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELK 1708
Score = 33.6 bits (76), Expect = 0.23
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 4 EEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNK 35
EED+KK + KK +KK + KKK ++ K
Sbjct: 1401 EEDKKKADELKKAAAAKKKADEAKKKAEEKKK 1432
Score = 33.2 bits (75), Expect = 0.26
Identities = 15/35 (42%), Positives = 21/35 (60%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNK 35
E E +EK + +KKKEE +KK KKK ++ K
Sbjct: 1358 EAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKK 1392
Score = 32.8 bits (74), Expect = 0.42
Identities = 15/35 (42%), Positives = 23/35 (65%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNK 35
E+ E EKKK++ KKK + KK+ ++KKK + K
Sbjct: 1364 EKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKK 1398
Score = 32.4 bits (73), Expect = 0.44
Identities = 17/52 (32%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKK--KKKVNKVKPVHIIFYRDGVSE 50
++E E++KKK ++ KK+EEEKK+ KK +KK +++ + + E
Sbjct: 1736 KKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDE 1787
Score = 32.4 bits (73), Expect = 0.48
Identities = 7/34 (20%), Positives = 16/34 (47%)
Query: 4 EEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNKVK 37
EE +K + K + E + + ++K + + K
Sbjct: 1339 EEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKK 1372
Score = 32.4 bits (73), Expect = 0.48
Identities = 13/37 (35%), Positives = 24/37 (64%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNKVK 37
+ EEE++ K ++ KK EE+KK+ ++ KK ++ K
Sbjct: 1654 KAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKA 1690
Score = 32.4 bits (73), Expect = 0.54
Identities = 11/34 (32%), Positives = 21/34 (61%)
Query: 4 EEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNKVK 37
+E +KK ++ KKK + KK+ ++ KK + K +
Sbjct: 1318 DEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAE 1351
Score = 32.4 bits (73), Expect = 0.56
Identities = 16/41 (39%), Positives = 29/41 (70%), Gaps = 4/41 (9%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQ----KKQKKKKKKVNKVK 37
+ EEE++ K ++ KK+ EE+KK+ KK +++KKK+ +K
Sbjct: 1723 KAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLK 1763
Score = 31.6 bits (71), Expect = 0.77
Identities = 6/36 (16%), Positives = 17/36 (47%)
Query: 2 EEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNKVK 37
+++ D KKK ++ K+ E + + + + +
Sbjct: 1328 KKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAE 1363
Score = 31.6 bits (71), Expect = 0.84
Identities = 14/31 (45%), Positives = 22/31 (70%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKK 31
+++E +EKKK ++ KK EEE K K ++ KK
Sbjct: 1639 KKKEAEEKKKAEELKKAEEENKIKAAEEAKK 1669
Score = 31.6 bits (71), Expect = 0.98
Identities = 7/31 (22%), Positives = 16/31 (51%)
Query: 2 EEEEDEKKKKKKKKKEEEEKKQKKQKKKKKK 32
+++ +E KK + K E E + + ++K
Sbjct: 1335 KKKAEEAKKAAEAAKAEAEAAADEAEAAEEK 1365
Score = 31.3 bits (70), Expect = 1.0
Identities = 16/36 (44%), Positives = 24/36 (66%)
Query: 2 EEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNKVK 37
++ E+ K K ++ KK EEEKK+ +Q KKK+ K K
Sbjct: 1613 KKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKK 1648
Score = 31.3 bits (70), Expect = 1.1
Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKK----KKKVNKVK 37
E E ++ + ++K E EKK+++ KKK KKK + K
Sbjct: 1351 EAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKK 1391
Score = 31.3 bits (70), Expect = 1.1
Identities = 16/41 (39%), Positives = 27/41 (65%), Gaps = 4/41 (9%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQ----KKQKKKKKKVNKVK 37
+E E E+K + +KK+EE KK+ KK+ ++KKK ++ K
Sbjct: 1357 DEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAK 1397
Score = 31.3 bits (70), Expect = 1.1
Identities = 12/39 (30%), Positives = 23/39 (58%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNKVKPV 39
E ++ +E KKK ++ K+ EE ++K + KK+ + K
Sbjct: 1666 EAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKA 1704
Score = 31.3 bits (70), Expect = 1.2
Identities = 14/31 (45%), Positives = 23/31 (74%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKK 31
+++E +EKKK ++ KK EEE K K ++ KK+
Sbjct: 1708 KKKEAEEKKKAEELKKAEEENKIKAEEAKKE 1738
Score = 31.3 bits (70), Expect = 1.2
Identities = 16/37 (43%), Positives = 25/37 (67%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNKVK 37
E+++E+ KKK KK+ EEKK+ + KKK + +K K
Sbjct: 1370 EKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKK 1406
Score = 30.9 bits (69), Expect = 1.4
Identities = 16/41 (39%), Positives = 26/41 (63%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNKVKPVHI 41
++ EE+ K K ++ KKE EE K+K ++ KK + K K H+
Sbjct: 1722 KKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHL 1762
Score = 30.9 bits (69), Expect = 1.7
Identities = 14/37 (37%), Positives = 25/37 (67%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNKVK 37
++E E++KK ++ KK EEE K + ++ KK + +K K
Sbjct: 1640 KKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKK 1676
Score = 30.5 bits (68), Expect = 2.1
Identities = 7/34 (20%), Positives = 16/34 (47%)
Query: 4 EEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNKVK 37
+ +KK ++ KK E K + + + + + K
Sbjct: 1332 DAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEK 1365
Score = 30.5 bits (68), Expect = 2.2
Identities = 13/31 (41%), Positives = 22/31 (70%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKK 31
E ++ DE KKK ++ K+ +E K+K ++ KKK
Sbjct: 1468 EAKKADEAKKKAEEAKKADEAKKKAEEAKKK 1498
Score = 30.1 bits (67), Expect = 2.4
Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 4/38 (10%)
Query: 4 EEDEKKKKKKKKKEEEEKKQKKQKKK----KKKVNKVK 37
+E +KK ++ KKK +E KK KKK KKK + K
Sbjct: 1394 DEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKK 1431
Score = 30.1 bits (67), Expect = 2.5
Identities = 12/37 (32%), Positives = 24/37 (64%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNKVK 37
++ EE+ K K ++ K+ EE K+K ++ KK + ++ K
Sbjct: 1653 KKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKK 1689
Score = 30.1 bits (67), Expect = 2.7
Identities = 11/32 (34%), Positives = 21/32 (65%)
Query: 4 EEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNK 35
EE +K ++ +KK E KK+ ++ KK +++ K
Sbjct: 1678 EEAKKAEEDEKKAAEALKKEAEEAKKAEELKK 1709
Score = 30.1 bits (67), Expect = 2.8
Identities = 9/38 (23%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Query: 1 EEEEEDE-KKKKKKKKKEEEEKKQKKQKKKKKKVNKVK 37
E ++ E K + + +E E ++K + +KK + K
Sbjct: 1340 EAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAK 1377
Score = 29.7 bits (66), Expect = 3.0
Identities = 13/31 (41%), Positives = 23/31 (74%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKK 31
E+++ DE KKK ++ K+ +E K+K ++ KKK
Sbjct: 1300 EKKKADEAKKKAEEAKKADEAKKKAEEAKKK 1330
Score = 29.7 bits (66), Expect = 3.1
Identities = 17/41 (41%), Positives = 27/41 (65%), Gaps = 4/41 (9%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKK----KKKVNKVK 37
E+++ DE KK ++KKK +E KK+ ++ KK KKK + K
Sbjct: 1288 EKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAK 1328
Score = 29.7 bits (66), Expect = 3.1
Identities = 13/34 (38%), Positives = 21/34 (61%)
Query: 4 EEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNKVK 37
E+ KK ++ KKK EE KK ++ +KK + K +
Sbjct: 1664 AEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKE 1697
Score = 29.7 bits (66), Expect = 3.1
Identities = 10/37 (27%), Positives = 18/37 (48%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNKVK 37
+++ E+ KKK KK+ EE K+ + K +
Sbjct: 1321 KKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAAD 1357
Score = 29.7 bits (66), Expect = 3.7
Identities = 13/34 (38%), Positives = 21/34 (61%)
Query: 4 EEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNKVK 37
+E +KK ++ KKK +E KK + KKK + K +
Sbjct: 1486 DEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAE 1519
Score = 29.7 bits (66), Expect = 3.7
Identities = 14/37 (37%), Positives = 24/37 (64%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNKVK 37
+++ DE KKK ++KK+ +E K+K ++ KK K K
Sbjct: 1416 AKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKK 1452
Score = 29.3 bits (65), Expect = 4.1
Identities = 15/37 (40%), Positives = 24/37 (64%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNKVK 37
EE+ E +KKK++ KK+ + K+K ++KKK K K
Sbjct: 1363 EEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKK 1399
Score = 29.3 bits (65), Expect = 4.3
Identities = 12/32 (37%), Positives = 22/32 (68%)
Query: 4 EEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNK 35
+ +KK ++KKK +E +KK ++ KKK ++ K
Sbjct: 1381 DAAKKKAEEKKKADEAKKKAEEDKKKADELKK 1412
Score = 29.3 bits (65), Expect = 4.4
Identities = 13/33 (39%), Positives = 21/33 (63%)
Query: 5 EDEKKKKKKKKKEEEEKKQKKQKKKKKKVNKVK 37
++ KKK ++ KK +E KK+ ++ KKK K K
Sbjct: 1305 DEAKKKAEEAKKADEAKKKAEEAKKKADAAKKK 1337
Score = 29.3 bits (65), Expect = 4.6
Identities = 14/37 (37%), Positives = 25/37 (67%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNKVK 37
E+++ DE KKK ++ K+ +E K+K ++ KK + K K
Sbjct: 1429 EKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKK 1465
Score = 29.3 bits (65), Expect = 4.8
Identities = 14/37 (37%), Positives = 26/37 (70%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNKVK 37
++E E++KK ++ KK EEE K + ++ KK+ + +K K
Sbjct: 1709 KKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKK 1745
Score = 29.3 bits (65), Expect = 4.9
Identities = 9/36 (25%), Positives = 20/36 (55%)
Query: 2 EEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNKVK 37
+ E + + + +E+ E +KK+++ KKK + K
Sbjct: 1349 KAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAK 1384
Score = 29.3 bits (65), Expect = 4.9
Identities = 15/37 (40%), Positives = 23/37 (62%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNKVK 37
E ++ DE KKK ++ K+ EE K+K ++ KK K K
Sbjct: 1442 EAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKK 1478
Score = 29.0 bits (64), Expect = 5.5
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKK---KKKVNKVK 37
++ +KK + KKK EE+KK + KKK KK ++ K
Sbjct: 1411 KKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAK 1450
Score = 29.0 bits (64), Expect = 5.6
Identities = 12/35 (34%), Positives = 22/35 (62%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNK 35
+++ ++ KK KKK +E KK+ ++KKK + K
Sbjct: 1404 KKKADELKKAAAAKKKADEAKKKAEEKKKADEAKK 1438
Score = 29.0 bits (64), Expect = 5.9
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKK 30
+++ E++KKK + KK KK+ + KKK
Sbjct: 1397 KKKAEEDKKKADELKKAAAAKKKADEAKKK 1426
Score = 29.0 bits (64), Expect = 6.0
Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 4/37 (10%)
Query: 5 EDEKKKKKKKKKEEEEKKQKKQKKK----KKKVNKVK 37
E+ KKK ++ KK +E KK+ ++ KK KKK + K
Sbjct: 1460 EEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAK 1496
Score = 29.0 bits (64), Expect = 6.0
Identities = 7/31 (22%), Positives = 16/31 (51%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKK 31
+++ + KKK ++ KK E K + + +
Sbjct: 1328 KKKADAAKKKAEEAKKAAEAAKAEAEAAADE 1358
Score = 29.0 bits (64), Expect = 6.5
Identities = 12/32 (37%), Positives = 21/32 (65%)
Query: 4 EEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNK 35
+E +KK ++ KK +E +KK ++ KKK + K
Sbjct: 1473 DEAKKKAEEAKKADEAKKKAEEAKKKADEAKK 1504
Score = 29.0 bits (64), Expect = 6.6
Identities = 15/37 (40%), Positives = 23/37 (62%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNKVK 37
E ++ +EKKK + KK+ EE K+ + KKK + K K
Sbjct: 1294 EAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKK 1330
Score = 28.6 bits (63), Expect = 7.5
Identities = 12/32 (37%), Positives = 20/32 (62%)
Query: 4 EEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNK 35
+E +KK ++ KK +E +KK ++ KKK K
Sbjct: 1305 DEAKKKAEEAKKADEAKKKAEEAKKKADAAKK 1336
Score = 28.6 bits (63), Expect = 7.5
Identities = 16/41 (39%), Positives = 26/41 (63%), Gaps = 4/41 (9%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQ----KKQKKKKKKVNKVK 37
+++ E++KK + KKK EE+KK+ KK KKK ++ K
Sbjct: 1384 KKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAK 1424
Score = 28.6 bits (63), Expect = 8.1
Identities = 7/37 (18%), Positives = 18/37 (48%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNKVK 37
+ E + + + + E +++ + +KKK+ K K
Sbjct: 1343 KAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKK 1379
Score = 28.6 bits (63), Expect = 8.2
Identities = 14/37 (37%), Positives = 23/37 (62%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNKVK 37
++++ DE KK KK+ +E K+K ++KKK K K
Sbjct: 1403 DKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKK 1439
Score = 28.6 bits (63), Expect = 8.5
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Query: 4 EEDEKKKKKKKKKEEEEKKQKKQKK--KKKKVNKVK 37
EE +KK + KK E +KK + KK + KK ++ K
Sbjct: 1493 EEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAK 1528
Score = 28.6 bits (63), Expect = 8.7
Identities = 12/32 (37%), Positives = 21/32 (65%)
Query: 4 EEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNK 35
EE++K K ++ KK EE K + ++ KK ++ K
Sbjct: 1602 EEEKKMKAEEAKKAEEAKIKAEELKKAEEEKK 1633
Score = 28.2 bits (62), Expect = 9.4
Identities = 14/35 (40%), Positives = 22/35 (62%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNK 35
+++ E+ KK + KKK EE KK + KKK ++ K
Sbjct: 1463 KKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKK 1497
Score = 28.2 bits (62), Expect = 10.0
Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 4/41 (9%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQ----KKQKKKKKKVNKVK 37
+++ E+ KK + KKK EE KK+ KK+ ++ KK +
Sbjct: 1308 KKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAA 1348
>gnl|CDD|234017 TIGR02794, tolA_full, TolA protein. TolA couples the inner
membrane complex of itself with TolQ and TolR to the
outer membrane complex of TolB and OprL (also called
Pal). Most of the length of the protein consists of
low-complexity sequence that may differ in both length
and composition from one species to another,
complicating efforts to discriminate TolA (the most
divergent gene in the tol-pal system) from paralogs such
as TonB. Selection of members of the seed alignment and
criteria for setting scoring cutoffs are based largely
conserved operon struction. //The Tol-Pal complex is
required for maintaining outer membrane integrity. Also
involved in transport (uptake) of colicins and
filamentous DNA, and implicated in pathogenesis.
Transport is energized by the proton motive force. TolA
is an inner membrane protein that interacts with
periplasmic TolB and with outer membrane porins ompC,
phoE and lamB [Transport and binding proteins, Other,
Cellular processes, Pathogenesis].
Length = 346
Score = 36.4 bits (84), Expect = 0.019
Identities = 14/37 (37%), Positives = 19/37 (51%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNKVK 37
+ E +KK + KKK E E K K + K K K + K
Sbjct: 159 KAAAEAKKKAAEAKKKAEAEAKAKAEAKAKAKAEEAK 195
Score = 36.4 bits (84), Expect = 0.021
Identities = 10/30 (33%), Positives = 18/30 (60%)
Query: 3 EEEDEKKKKKKKKKEEEEKKQKKQKKKKKK 32
+ E K+ ++K+K+ EE K K+ + K K
Sbjct: 106 QAEQAAKQAEEKQKQAEEAKAKQAAEAKAK 135
Score = 35.2 bits (81), Expect = 0.049
Identities = 14/32 (43%), Positives = 20/32 (62%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKK 32
E E ++K K++ KK+ EEE K K + KKK
Sbjct: 136 AEAEAEKKAKEEAKKQAEEEAKAKAAAEAKKK 167
Score = 34.0 bits (78), Expect = 0.10
Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 3/36 (8%)
Query: 5 EDEKKKKKK---KKKEEEEKKQKKQKKKKKKVNKVK 37
E+E K K KKK E KK+ + + K K K K
Sbjct: 153 EEEAKAKAAAEAKKKAAEAKKKAEAEAKAKAEAKAK 188
Score = 34.0 bits (78), Expect = 0.12
Identities = 10/32 (31%), Positives = 19/32 (59%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKK 32
+ EE K+ + K K E E ++K +++ KK+
Sbjct: 120 QAEEAKAKQAAEAKAKAEAEAEKKAKEEAKKQ 151
Score = 33.7 bits (77), Expect = 0.16
Identities = 10/39 (25%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Query: 2 EEEEDEKKKKKKKKKEEEEKKQ--KKQKKKKKKVNKVKP 38
+ E+ K+ ++K+K+ EE K + + K K + + K
Sbjct: 106 QAEQAAKQAEEKQKQAEEAKAKQAAEAKAKAEAEAEKKA 144
Score = 33.3 bits (76), Expect = 0.19
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
Query: 2 EEEEDEKKKKKKKKKEEEEKKQKK---QKKKKKKVNKVKP 38
E E EKK K++ KK+ EE+ + K + KKK K K
Sbjct: 136 AEAEAEKKAKEEAKKQAEEEAKAKAAAEAKKKAAEAKKKA 175
Score = 33.3 bits (76), Expect = 0.20
Identities = 7/34 (20%), Positives = 20/34 (58%)
Query: 2 EEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNK 35
+ E+ ++ +K++ E+ +K+ +Q+ +K K
Sbjct: 72 KLEQQAEEAEKQRAAEQARQKELEQRAAAEKAAK 105
Score = 33.3 bits (76), Expect = 0.20
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 3 EEEDEKKKKKKKKKEEEEKKQKKQKKKKKK 32
EEE + K + KK+ E K+K + + K K
Sbjct: 153 EEEAKAKAAAEAKKKAAEAKKKAEAEAKAK 182
Score = 32.5 bits (74), Expect = 0.36
Identities = 11/36 (30%), Positives = 19/36 (52%)
Query: 3 EEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNKVKP 38
E E +K K+ E+ KQ ++K+K+ + K K
Sbjct: 93 ELEQRAAAEKAAKQAEQAAKQAEEKQKQAEEAKAKQ 128
Score = 32.1 bits (73), Expect = 0.41
Identities = 10/32 (31%), Positives = 20/32 (62%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKK 32
++ EE +K+ ++ K K+ E K K + + +KK
Sbjct: 112 KQAEEKQKQAEEAKAKQAAEAKAKAEAEAEKK 143
Score = 31.3 bits (71), Expect = 0.86
Identities = 7/34 (20%), Positives = 18/34 (52%)
Query: 2 EEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNK 35
E+ +K+ +++ E+ KQ +Q K+ + +
Sbjct: 85 AAEQARQKELEQRAAAEKAAKQAEQAAKQAEEKQ 118
Score = 31.0 bits (70), Expect = 1.2
Identities = 6/35 (17%), Positives = 19/35 (54%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNK 35
E+ +K+ +++ E+ K+ ++ K+ ++ K
Sbjct: 85 AAEQARQKELEQRAAAEKAAKQAEQAAKQAEEKQK 119
Score = 30.6 bits (69), Expect = 1.4
Identities = 11/35 (31%), Positives = 21/35 (60%), Gaps = 4/35 (11%)
Query: 1 EEEEEDEKKKK----KKKKKEEEEKKQKKQKKKKK 31
++++ +E K K K K E E +K+ K++ KK+
Sbjct: 117 KQKQAEEAKAKQAAEAKAKAEAEAEKKAKEEAKKQ 151
Score = 30.6 bits (69), Expect = 1.6
Identities = 9/31 (29%), Positives = 17/31 (54%)
Query: 2 EEEEDEKKKKKKKKKEEEEKKQKKQKKKKKK 32
+ E +KK + + K + E K + K ++ K K
Sbjct: 167 KAAEAKKKAEAEAKAKAEAKAKAKAEEAKAK 197
Score = 30.2 bits (68), Expect = 1.7
Identities = 10/37 (27%), Positives = 21/37 (56%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNKVK 37
E + + + K K + E E+K +++ KK+ ++ K K
Sbjct: 123 EAKAKQAAEAKAKAEAEAEKKAKEEAKKQAEEEAKAK 159
Score = 29.8 bits (67), Expect = 2.6
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 3 EEEDEKKKKKKKKKEEEEKKQKKQKKKKK 31
E E + K + K K + EE K K + K K
Sbjct: 176 EAEAKAKAEAKAKAKAEEAKAKAEAAKAK 204
Score = 29.0 bits (65), Expect = 4.3
Identities = 9/31 (29%), Positives = 16/31 (51%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKK 31
+ E +K + + K K E + K K ++ K K
Sbjct: 167 KAAEAKKKAEAEAKAKAEAKAKAKAEEAKAK 197
Score = 29.0 bits (65), Expect = 4.8
Identities = 9/37 (24%), Positives = 18/37 (48%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNKVK 37
E + + + + K K E + K + ++ K K + K K
Sbjct: 168 AAEAKKKAEAEAKAKAEAKAKAKAEEAKAKAEAAKAK 204
Score = 28.6 bits (64), Expect = 5.2
Identities = 5/34 (14%), Positives = 20/34 (58%)
Query: 4 EEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNKVK 37
+ +++ ++ +K++ E+ +QK+ +++ K
Sbjct: 72 KLEQQAEEAEKQRAAEQARQKELEQRAAAEKAAK 105
Score = 28.6 bits (64), Expect = 6.0
Identities = 12/42 (28%), Positives = 21/42 (50%), Gaps = 4/42 (9%)
Query: 1 EEEEEDEKKKKK----KKKKEEEEKKQKKQKKKKKKVNKVKP 38
E+ EK K+ K+ EE++K+ ++ K K+ K K
Sbjct: 95 EQRAAAEKAAKQAEQAAKQAEEKQKQAEEAKAKQAAEAKAKA 136
Score = 27.9 bits (62), Expect = 9.9
Identities = 7/30 (23%), Positives = 18/30 (60%)
Query: 2 EEEEDEKKKKKKKKKEEEEKKQKKQKKKKK 31
EE E ++ ++ ++KE E++ ++ K+
Sbjct: 78 EEAEKQRAAEQARQKELEQRAAAEKAAKQA 107
>gnl|CDD|221641 pfam12569, NARP1, NMDA receptor-regulated protein 1. This domain
family is found in eukaryotes, and is approximately 40
amino acids in length. The family is found in
association with pfam07719, pfam00515. There is a single
completely conserved residue L that may be functionally
important. NARP1 is the mammalian homologue of a yeast
N-terminal acetyltransferase that regulates entry into
the G(0) phase of the cell cycle.
Length = 516
Score = 36.4 bits (85), Expect = 0.020
Identities = 10/31 (32%), Positives = 18/31 (58%)
Query: 8 KKKKKKKKKEEEEKKQKKQKKKKKKVNKVKP 38
++K +KK ++EE +K +KK + K K
Sbjct: 418 QRKAEKKAEKEEAEKAAAKKKAEAAAKKAKG 448
Score = 36.1 bits (84), Expect = 0.030
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 8 KKKKKKKKKEEEEKKQKKQKKKKKKVNKVK 37
KK++K +KK E+E+ +K KKK + K
Sbjct: 416 KKQRKAEKKAEKEEAEKAAAKKKAEAAAKK 445
Score = 34.1 bits (79), Expect = 0.12
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 8 KKKKKKKKKEEEEKKQKKQKKKKKKVNKVKP 38
+K +KK +KEE EK K+K + P
Sbjct: 419 RKAEKKAEKEEAEKAAAKKKAEAAAKKAKGP 449
Score = 33.4 bits (77), Expect = 0.19
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 2 EEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVN 34
E+E+ +K KKK E KK K + KKV+
Sbjct: 425 AEKEEAEKAAAKKKAEAAAKKAKGPDGETKKVD 457
Score = 32.2 bits (74), Expect = 0.48
Identities = 10/36 (27%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 5 EDEKKKKKKKKKEEEEKKQKKQKKKKKKVN-KVKPV 39
++K +K++ +K +KK + KK K + + K V
Sbjct: 421 AEKKAEKEEAEKAAAKKKAEAAAKKAKGPDGETKKV 456
Score = 31.8 bits (73), Expect = 0.64
Identities = 6/36 (16%), Positives = 16/36 (44%)
Query: 3 EEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNKVKP 38
E+ +K++ +K +++ + +K K K
Sbjct: 421 AEKKAEKEEAEKAAAKKKAEAAAKKAKGPDGETKKV 456
Score = 29.9 bits (68), Expect = 2.8
Identities = 10/38 (26%), Positives = 20/38 (52%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNKVKP 38
E++ ++++ +K K++ E KK K + KV P
Sbjct: 421 AEKKAEKEEAEKAAAKKKAEAAAKKAKGPDGETKKVDP 458
>gnl|CDD|240388 PTZ00372, PTZ00372, endonuclease 4-like protein; Provisional.
Length = 413
Score = 36.2 bits (84), Expect = 0.025
Identities = 14/38 (36%), Positives = 21/38 (55%)
Query: 2 EEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNKVKPV 39
E + + +KKKKKKKE++E K + + K K K
Sbjct: 64 NESKKKSEKKKKKKKEKKEPKSEGETKLGFKTPKKSKK 101
Score = 36.2 bits (84), Expect = 0.026
Identities = 14/37 (37%), Positives = 22/37 (59%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNKVK 37
E ++ +KKKKKKK+++E K + + K K K K
Sbjct: 64 NESKKKSEKKKKKKKEKKEPKSEGETKLGFKTPKKSK 100
Score = 32.8 bits (75), Expect = 0.30
Identities = 22/48 (45%), Positives = 28/48 (58%), Gaps = 9/48 (18%)
Query: 1 EEEEEDEKKKKKKKKKEEEE---------KKQKKQKKKKKKVNKVKPV 39
E +++ EKKKKKKK+K+E + K KK KK KKK K KP
Sbjct: 65 ESKKKSEKKKKKKKEKKEPKSEGETKLGFKTPKKSKKTKKKPPKPKPN 112
Score = 30.8 bits (70), Expect = 1.2
Identities = 13/32 (40%), Positives = 23/32 (71%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKK 32
E++ + KKK +KKKK+++EKK+ K + + K
Sbjct: 60 EDKNNESKKKSEKKKKKKKEKKEPKSEGETKL 91
Score = 29.3 bits (66), Expect = 3.3
Identities = 15/30 (50%), Positives = 19/30 (63%)
Query: 6 DEKKKKKKKKKEEEEKKQKKQKKKKKKVNK 35
KK KK+ K E KK+ ++KKKKKK K
Sbjct: 52 TSTKKDKKEDKNNESKKKSEKKKKKKKEKK 81
>gnl|CDD|240402 PTZ00399, PTZ00399, cysteinyl-tRNA-synthetase; Provisional.
Length = 651
Score = 36.5 bits (85), Expect = 0.025
Identities = 13/31 (41%), Positives = 25/31 (80%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKK 31
EE+E +++K+ +K K++EEKK+K+ +K +K
Sbjct: 558 EEKEALKEQKRLRKLKKQEEKKKKELEKLEK 588
Score = 34.6 bits (80), Expect = 0.090
Identities = 12/31 (38%), Positives = 25/31 (80%)
Query: 2 EEEEDEKKKKKKKKKEEEEKKQKKQKKKKKK 32
EE+E K++K+ +K +++E+K+KK+ +K +K
Sbjct: 558 EEKEALKEQKRLRKLKKQEEKKKKELEKLEK 588
Score = 33.1 bits (76), Expect = 0.24
Identities = 12/29 (41%), Positives = 22/29 (75%)
Query: 7 EKKKKKKKKKEEEEKKQKKQKKKKKKVNK 35
EK++K+ K+++ +K KKQ++KKKK +
Sbjct: 556 EKEEKEALKEQKRLRKLKKQEEKKKKELE 584
Score = 33.1 bits (76), Expect = 0.25
Identities = 14/34 (41%), Positives = 25/34 (73%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVN 34
E+E E+K+ +K KK+EE+KK++ +K +K K+
Sbjct: 559 EKEALKEQKRLRKLKKQEEKKKKELEKLEKAKIP 592
Score = 32.3 bits (74), Expect = 0.53
Identities = 9/27 (33%), Positives = 20/27 (74%)
Query: 9 KKKKKKKKEEEEKKQKKQKKKKKKVNK 35
+K+ K+++ K +K+++KKKK++ K
Sbjct: 559 EKEALKEQKRLRKLKKQEEKKKKELEK 585
Score = 31.5 bits (72), Expect = 0.79
Identities = 10/30 (33%), Positives = 24/30 (80%)
Query: 2 EEEEDEKKKKKKKKKEEEEKKQKKQKKKKK 31
E+EE E K++K+ ++ +++++KK+K+ +K
Sbjct: 556 EKEEKEALKEQKRLRKLKKQEEKKKKELEK 585
Score = 31.2 bits (71), Expect = 1.2
Identities = 11/35 (31%), Positives = 27/35 (77%)
Query: 3 EEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNKVK 37
E+E+++ K++K+ + +K+++K+KK+ +K+ K K
Sbjct: 556 EKEEKEALKEQKRLRKLKKQEEKKKKELEKLEKAK 590
Score = 30.4 bits (69), Expect = 1.9
Identities = 11/33 (33%), Positives = 25/33 (75%)
Query: 5 EDEKKKKKKKKKEEEEKKQKKQKKKKKKVNKVK 37
+D+++ +++K+++E K+QK+ +K KK+ K K
Sbjct: 548 DDKEELQREKEEKEALKEQKRLRKLKKQEEKKK 580
Score = 29.2 bits (66), Expect = 4.1
Identities = 9/34 (26%), Positives = 25/34 (73%)
Query: 4 EEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNKVK 37
++ E+ +++K++KE +++++ +K KK++ K K
Sbjct: 548 DDKEELQREKEEKEALKEQKRLRKLKKQEEKKKK 581
Score = 28.8 bits (65), Expect = 6.0
Identities = 9/37 (24%), Positives = 30/37 (81%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNKVK 37
+++EE +++K++K+ +E+++ +K +K+++KK +++
Sbjct: 548 DDKEELQREKEEKEALKEQKRLRKLKKQEEKKKKELE 584
>gnl|CDD|206063 pfam13892, DBINO, DNA-binding domain. DBINO is a DNA-binding
domain found on global transcription activator SNF2L1
proteins and chromatin re-modelling proteins.
Length = 140
Score = 34.5 bits (80), Expect = 0.027
Identities = 13/34 (38%), Positives = 23/34 (67%), Gaps = 5/34 (14%)
Query: 1 EEEEEDEKKKKKK-----KKKEEEEKKQKKQKKK 29
E+EE + +K+ +K KKEEE ++ K+Q++K
Sbjct: 82 EKEERELRKRAEKEALEQAKKEEELREAKRQQRK 115
>gnl|CDD|206228 pfam14058, PcfK, PcfK-like protein. The PcfK-like protein family
includes the Enterococcus faecalis PcfK protein, which
is functionally uncharacterized. This family of proteins
is found in bacteria and viruses. Proteins in this
family are typically between 137 and 257 amino acids in
length. There are two completely conserved residues (D
and L) that may be functionally important.
Length = 136
Score = 34.3 bits (79), Expect = 0.029
Identities = 14/36 (38%), Positives = 19/36 (52%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNKV 36
EE+ E K+ K ++EE K QK+ KK KK
Sbjct: 93 EEKAEARKEALKAYQQEELRKIQKRSKKSKKAEPVQ 128
Score = 33.9 bits (78), Expect = 0.042
Identities = 11/38 (28%), Positives = 22/38 (57%)
Query: 2 EEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNKVKPV 39
EEE+ E +K+ K ++EE ++ +++ KK K +
Sbjct: 92 EEEKAEARKEALKAYQQEELRKIQKRSKKSKKAEPVQG 129
Score = 32.7 bits (75), Expect = 0.11
Identities = 13/32 (40%), Positives = 22/32 (68%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKK 32
EEE+ + +K+ K ++EE +K +K+ KK KK
Sbjct: 92 EEEKAEARKEALKAYQQEELRKIQKRSKKSKK 123
Score = 28.1 bits (63), Expect = 3.7
Identities = 11/34 (32%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
Query: 1 EEEEEDEKKKKKKKKKE--EEEKKQKKQKKKKKK 32
E E+EK + +K+ + ++E+ +K QK+ KK
Sbjct: 88 VELTEEEKAEARKEALKAYQQEELRKIQKRSKKS 121
>gnl|CDD|236978 PRK11778, PRK11778, putative inner membrane peptidase;
Provisional.
Length = 330
Score = 36.0 bits (84), Expect = 0.030
Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Query: 10 KKKKKKKEEEEKKQKKQKKKKKKVNKVKP 38
KK+ K + +KK++KQ+ K K K KP
Sbjct: 63 KKELKAWHKAQKKKEKQEAKAAK-AKSKP 90
Score = 33.3 bits (77), Expect = 0.18
Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Query: 5 EDEKKK--KKKKKKEEEEKKQKKQKKKKK 31
+ E K K +KKKE++E K K K K +
Sbjct: 63 KKELKAWHKAQKKKEKQEAKAAKAKSKPR 91
Score = 31.7 bits (73), Expect = 0.65
Identities = 7/30 (23%), Positives = 19/30 (63%)
Query: 4 EEDEKKKKKKKKKEEEEKKQKKQKKKKKKV 33
+++ K K +KK+E+++ + + K K ++
Sbjct: 63 KKELKAWHKAQKKKEKQEAKAAKAKSKPRL 92
Score = 30.2 bits (69), Expect = 1.8
Identities = 8/32 (25%), Positives = 18/32 (56%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKK 32
+ D+K+ K K +++++KQ+ + K K
Sbjct: 57 KAALLDKKELKAWHKAQKKKEKQEAKAAKAKS 88
>gnl|CDD|222636 pfam14265, DUF4355, Domain of unknown function (DUF4355). This
family of proteins is found in bacteria and viruses.
Proteins in this family are typically between 180 and
214 amino acids in length.
Length = 125
Score = 34.2 bits (79), Expect = 0.030
Identities = 9/35 (25%), Positives = 21/35 (60%)
Query: 2 EEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNKV 36
EE+ E + +K +K+ EE + + +++ K + K+
Sbjct: 43 AEEKAEYELEKLEKELEELEAELARRELKAEAKKM 77
Score = 33.8 bits (78), Expect = 0.043
Identities = 9/32 (28%), Positives = 21/32 (65%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKK 32
E+++E++K + +K K E+K + + +K +K
Sbjct: 25 EKKQEEKKSEAEKLAKMSAEEKAEYELEKLEK 56
Score = 33.8 bits (78), Expect = 0.044
Identities = 9/37 (24%), Positives = 24/37 (64%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNKVK 37
+++EE + + +K K EEK + + +K +K++ +++
Sbjct: 26 KKQEEKKSEAEKLAKMSAEEKAEYELEKLEKELEELE 62
Score = 33.0 bits (76), Expect = 0.081
Identities = 11/31 (35%), Positives = 20/31 (64%)
Query: 5 EDEKKKKKKKKKEEEEKKQKKQKKKKKKVNK 35
+ E K K+K + EKKQ+++K + +K+ K
Sbjct: 10 DKEVDKAIAKEKAKWEKKQEEKKSEAEKLAK 40
Score = 31.8 bits (73), Expect = 0.17
Identities = 8/37 (21%), Positives = 21/37 (56%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNKVK 37
E E+ K ++K + E EK +K+ ++ + ++ + +
Sbjct: 33 SEAEKLAKMSAEEKAEYELEKLEKELEELEAELARRE 69
Score = 31.8 bits (73), Expect = 0.17
Identities = 8/32 (25%), Positives = 17/32 (53%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKK 32
+ E E K ++K E E +K +K+ ++ +
Sbjct: 32 KSEAEKLAKMSAEEKAEYELEKLEKELEELEA 63
Score = 30.3 bits (69), Expect = 0.64
Identities = 11/34 (32%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 1 EEEEEDEKKKKKKK-KKEEEEKKQKKQKKKKKKV 33
EE+ E E +K +K+ ++ E E +++ K + KK+
Sbjct: 44 EEKAEYELEKLEKELEELEAELARRELKAEAKKM 77
Score = 29.9 bits (68), Expect = 0.77
Identities = 6/33 (18%), Positives = 19/33 (57%)
Query: 5 EDEKKKKKKKKKEEEEKKQKKQKKKKKKVNKVK 37
+EK + + +K E+E ++ + + +++ + K
Sbjct: 43 AEEKAEYELEKLEKELEELEAELARRELKAEAK 75
Score = 29.5 bits (67), Expect = 1.2
Identities = 9/34 (26%), Positives = 23/34 (67%)
Query: 2 EEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNK 35
++E D+ K+K K E++++++K + +K K++
Sbjct: 10 DKEVDKAIAKEKAKWEKKQEEKKSEAEKLAKMSA 43
Score = 28.4 bits (64), Expect = 3.1
Identities = 7/32 (21%), Positives = 19/32 (59%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKK 32
+ E++ E+KK + +K + ++K + + +K
Sbjct: 23 KWEKKQEEKKSEAEKLAKMSAEEKAEYELEKL 54
Score = 28.4 bits (64), Expect = 3.2
Identities = 9/30 (30%), Positives = 18/30 (60%)
Query: 3 EEEDEKKKKKKKKKEEEEKKQKKQKKKKKK 32
+E K +KK+++K+ E +K K ++K
Sbjct: 18 AKEKAKWEKKQEEKKSEAEKLAKMSAEEKA 47
Score = 27.6 bits (62), Expect = 5.4
Identities = 10/35 (28%), Positives = 23/35 (65%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNK 35
+E+ + EKK+++KK + E+ K ++K + ++ K
Sbjct: 19 KEKAKWEKKQEEKKSEAEKLAKMSAEEKAEYELEK 53
Score = 27.6 bits (62), Expect = 5.5
Identities = 7/35 (20%), Positives = 21/35 (60%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNK 35
+ E+ +++KK + +K + ++K + + +K+ K
Sbjct: 22 AKWEKKQEEKKSEAEKLAKMSAEEKAEYELEKLEK 56
Score = 27.2 bits (61), Expect = 7.0
Identities = 9/42 (21%), Positives = 22/42 (52%), Gaps = 5/42 (11%)
Query: 1 EEEEEDEKKKK-----KKKKKEEEEKKQKKQKKKKKKVNKVK 37
E++ E EK K K + + E+ +K+ ++ + + ++K
Sbjct: 30 EKKSEAEKLAKMSAEEKAEYELEKLEKELEELEAELARRELK 71
>gnl|CDD|218336 pfam04935, SURF6, Surfeit locus protein 6. The surfeit locus
protein SURF-6 is shown to be a component of the
nucleolar matrix and has a strong binding capacity for
nucleic acids.
Length = 206
Score = 35.4 bits (82), Expect = 0.031
Identities = 9/32 (28%), Positives = 22/32 (68%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKK 32
E +++++K+++ + KKQK+++ KKK+
Sbjct: 2 SSREALLEQRRRKREQRKARKKQKRKEAKKKE 33
Score = 33.8 bits (78), Expect = 0.088
Identities = 18/37 (48%), Positives = 25/37 (67%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNKVK 37
E +E+ EKKK +++KK EE K++K KK KK K K
Sbjct: 164 ERKEKVEKKKAERQKKREENLKKRKDDKKNKKKKKAK 200
Score = 33.4 bits (77), Expect = 0.11
Identities = 15/40 (37%), Positives = 28/40 (70%), Gaps = 2/40 (5%)
Query: 2 EEEEDEKKKKKKKKKEE--EEKKQKKQKKKKKKVNKVKPV 39
+E+ ++KK +++KK+EE +++K K+ KKKKK K +
Sbjct: 166 KEKVEKKKAERQKKREENLKKRKDDKKNKKKKKAKKKGRI 205
Score = 31.5 bits (72), Expect = 0.49
Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 11/42 (26%)
Query: 7 EKKKKKKKKK------EEEEKKQKKQKK-----KKKKVNKVK 37
EK+KKK KK+ + E+KK ++QKK KK+K +K
Sbjct: 152 EKQKKKSKKEWKERKEKVEKKKAERQKKREENLKKRKDDKKN 193
Score = 30.4 bits (69), Expect = 1.4
Identities = 8/29 (27%), Positives = 23/29 (79%)
Query: 9 KKKKKKKKEEEEKKQKKQKKKKKKVNKVK 37
+++++K+++ + +K++K+K+ KKK + K
Sbjct: 9 EQRRRKREQRKARKKQKRKEAKKKEDAQK 37
Score = 30.0 bits (68), Expect = 1.6
Identities = 14/38 (36%), Positives = 26/38 (68%), Gaps = 5/38 (13%)
Query: 1 EEEEEDEKKKK-----KKKKKEEEEKKQKKQKKKKKKV 33
E+++ E++KK KK+K +++ KK+KK KKK + +
Sbjct: 169 VEKKKAERQKKREENLKKRKDDKKNKKKKKAKKKGRIL 206
Score = 29.2 bits (66), Expect = 2.8
Identities = 14/63 (22%), Positives = 30/63 (47%), Gaps = 10/63 (15%)
Query: 2 EEEEDEKKKKKKKKKEEEEKKQKKQK----------KKKKKVNKVKPVHIIFYRDGVSEG 51
E+ +KK+K+K+ +++E QK + KKK + +I+F + ++G
Sbjct: 15 REQRKARKKQKRKEAKKKEDAQKSEAEEVKNEENKSKKKAAPIENAEGNIVFSKVEFADG 74
Query: 52 QFQ 54
+
Sbjct: 75 EQA 77
Score = 28.0 bits (63), Expect = 7.2
Identities = 8/29 (27%), Positives = 21/29 (72%)
Query: 3 EEEDEKKKKKKKKKEEEEKKQKKQKKKKK 31
E+ K++++K +K+++ K+ KK++ +K
Sbjct: 9 EQRRRKREQRKARKKQKRKEAKKKEDAQK 37
>gnl|CDD|235795 PRK06402, rpl12p, 50S ribosomal protein L12P; Reviewed.
Length = 106
Score = 33.8 bits (78), Expect = 0.031
Identities = 7/20 (35%), Positives = 18/20 (90%)
Query: 1 EEEEEDEKKKKKKKKKEEEE 20
EE+++E++++++K++ EEE
Sbjct: 77 AEEKKEEEEEEEEKEESEEE 96
Score = 32.2 bits (74), Expect = 0.093
Identities = 7/20 (35%), Positives = 16/20 (80%)
Query: 1 EEEEEDEKKKKKKKKKEEEE 20
EE+ E+++++++K+E EE
Sbjct: 76 AAEEKKEEEEEEEEKEESEE 95
Score = 31.5 bits (72), Expect = 0.19
Identities = 6/20 (30%), Positives = 15/20 (75%)
Query: 1 EEEEEDEKKKKKKKKKEEEE 20
EE +++++++++KEE E
Sbjct: 75 AAAEEKKEEEEEEEEKEESE 94
Score = 28.8 bits (65), Expect = 1.6
Identities = 6/21 (28%), Positives = 15/21 (71%)
Query: 1 EEEEEDEKKKKKKKKKEEEEK 21
+EKK+++++++E+EE
Sbjct: 73 AAAAAEEKKEEEEEEEEKEES 93
Score = 28.8 bits (65), Expect = 1.9
Identities = 6/22 (27%), Positives = 15/22 (68%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKK 22
E+KK++++++EE+E+
Sbjct: 72 AAAAAAEEKKEEEEEEEEKEES 93
>gnl|CDD|220371 pfam09736, Bud13, Pre-mRNA-splicing factor of RES complex. This
entry is characterized by proteins with alternating
conserved and low-complexity regions. Bud13 together
with Snu17p and a newly identified factor,
Pml1p/Ylr016c, form a novel trimeric complex. called
The RES complex, pre-mRNA retention and splicing
complex. Subunits of this complex are not essential for
viability of yeasts but they are required for efficient
splicing in vitro and in vivo. Furthermore,
inactivation of this complex causes pre-mRNA leakage
from the nucleus. Bud13 contains a unique,
phylogenetically conserved C-terminal region of unknown
function.
Length = 141
Score = 34.2 bits (79), Expect = 0.033
Identities = 15/54 (27%), Positives = 36/54 (66%), Gaps = 8/54 (14%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKK-------QKKQKKKKK-KVNKVKPVHIIFYRD 46
EE+ E+++++K++K+++EE++K QK++++K+ ++ K K + Y D
Sbjct: 15 EEKREEKEREKEEKERKEEKEKEWGKGLVQKEEREKRLEELEKAKNKPLARYAD 68
Score = 28.4 bits (64), Expect = 3.5
Identities = 10/25 (40%), Positives = 24/25 (96%)
Query: 6 DEKKKKKKKKKEEEEKKQKKQKKKK 30
D ++K+++K++E+EEK++K++K+K+
Sbjct: 13 DIEEKREEKEREKEEKERKEEKEKE 37
Score = 27.3 bits (61), Expect = 8.2
Identities = 8/24 (33%), Positives = 22/24 (91%)
Query: 8 KKKKKKKKKEEEEKKQKKQKKKKK 31
++K+++K+ E+E+K++K++K+K+
Sbjct: 14 IEEKREEKEREKEEKERKEEKEKE 37
Score = 26.9 bits (60), Expect = 9.8
Identities = 8/32 (25%), Positives = 23/32 (71%), Gaps = 3/32 (9%)
Query: 6 DEKKKK---KKKKKEEEEKKQKKQKKKKKKVN 34
D+ + ++K++E+E +K++K++K++K+
Sbjct: 6 DKSGRIIDIEEKREEKEREKEEKERKEEKEKE 37
>gnl|CDD|222581 pfam14181, YqfQ, YqfQ-like protein. The YqfQ-like protein family
includes the B. subtilis YqfQ protein, also known as
VrrA, which is functionally uncharacterized. This family
of proteins is found in bacteria. Proteins in this
family are typically between 146 and 237 amino acids in
length. There are two conserved sequence motifs: QYGP
and PKLY.
Length = 155
Score = 34.7 bits (80), Expect = 0.033
Identities = 10/39 (25%), Positives = 22/39 (56%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNKVKPV 39
+E E E + K + +E++K++ + K +K+ K +P
Sbjct: 106 TDETEQEDPPETKTESKEKKKREVPKPKTEKEKPKTEPK 144
Score = 34.0 bits (78), Expect = 0.053
Identities = 12/38 (31%), Positives = 21/38 (55%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNKVKP 38
E +E E++ + K E +EKK+++ K K + K K
Sbjct: 104 ESTDETEQEDPPETKTESKEKKKREVPKPKTEKEKPKT 141
Score = 34.0 bits (78), Expect = 0.056
Identities = 12/38 (31%), Positives = 22/38 (57%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNKVKP 38
E + E K+KKK++ + + +++K K + KK KP
Sbjct: 114 PPETKTESKEKKKREVPKPKTEKEKPKTEPKKPKPSKP 151
Score = 32.8 bits (75), Expect = 0.12
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 1 EEEEEDEKKKKKKKK-KEEEEKKQKKQKKKKKKVNKVKPVH 40
E E+ED + K + K K++ E + K +K+K K KP
Sbjct: 108 ETEQEDPPETKTESKEKKKREVPKPKTEKEKPKTEPKKPKP 148
Score = 32.0 bits (73), Expect = 0.23
Identities = 11/38 (28%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNKVKP 38
EE ++ +++ + K E ++K+K++ K K K KP
Sbjct: 103 EESTDETEQEDPPETKTESKEKKKREVPKPKT-EKEKP 139
Score = 32.0 bits (73), Expect = 0.25
Identities = 10/32 (31%), Positives = 22/32 (68%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKK 32
+EEEE E++ + ++E+ + + + K+KKK+
Sbjct: 96 DEEEETEEESTDETEQEDPPETKTESKEKKKR 127
Score = 31.6 bits (72), Expect = 0.37
Identities = 13/37 (35%), Positives = 25/37 (67%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNKVK 37
EEEE +E+ + ++++ E K + ++KKK++V K K
Sbjct: 97 EEEETEEESTDETEQEDPPETKTESKEKKKREVPKPK 133
Score = 30.1 bits (68), Expect = 1.1
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 6/43 (13%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQK------KQKKKKKKVNKVK 37
E+E+ E K + K+KK+ E K K K + KK K +K K
Sbjct: 110 EQEDPPETKTESKEKKKREVPKPKTEKEKPKTEPKKPKPSKPK 152
>gnl|CDD|187751 cd09270, RNase_H2-B, Ribonuclease H2-B is a subunit of the
eukaryotic RNase H complex which cleaves RNA-DNA
hybrids. Ribonuclease H2B is one of the three proteins
of eukaryotic RNase H2 complex that is required for
nucleic acid binding and hydrolysis. RNase H is
classified into two families, type I (prokaryotic RNase
HI, eukaryotic RNase H1 and viral RNase H) and type II
(prokaryotic RNase HII and HIII, and eukaryotic RNase
H2/HII). RNase H endonucleolytically hydrolyzes an RNA
strand when it is annealed to a complementary DNA strand
in the presence of divalent cations, in DNA replication
and repair. The enzyme can be found in bacteria,
archaea, and eukaryotes. Most prokaryotic and eukaryotic
genomes contain multiple RNase H genes. Despite a lack
of evidence for homology from sequence comparisons, type
I and type II RNase H share a common fold and similar
steric configurations of the four acidic active-site
residues, suggesting identical or very similar catalytic
mechanisms. Eukaryotic RNase HII is active during
replication and is believed to play a role in removal of
Okazaki fragment primers and single ribonucleotides in
DNA-DNA duplexes. Eukaryotic RNase HII is functional
when it forms a complex with RNase H2B and RNase H2C
proteins. It is speculated that the two accessory
subunits are required for correct folding of the
catalytic subunit of RNase HII. Mutations in the three
subunits of human RNase HII cause neurological disorder.
Length = 211
Score = 35.0 bits (81), Expect = 0.035
Identities = 19/39 (48%), Positives = 25/39 (64%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNKVKPV 39
+E E + KKK EEE+KK+KK+ KKKK+ KV V
Sbjct: 163 IKEAEAARDKKKSNNAEEEKKKKKKKSAKKKKLKKVAAV 201
Score = 31.1 bits (71), Expect = 0.71
Identities = 12/39 (30%), Positives = 25/39 (64%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNKVKPV 39
+++E D K+ + + K++ ++++KKKKKK K K +
Sbjct: 157 KKKELDIKEAEAARDKKKSNNAEEEKKKKKKKSAKKKKL 195
Score = 27.7 bits (62), Expect = 8.0
Identities = 13/37 (35%), Positives = 23/37 (62%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNKVK 37
E + ++ + + KKK E+++KK+KKK K K+K
Sbjct: 160 ELDIKEAEAARDKKKSNNAEEEKKKKKKKSAKKKKLK 196
>gnl|CDD|234311 TIGR03685, L12P_arch, 50S ribosomal protein L12P. This model
represents the L12P protein of the large (50S) subunit
of the archaeal ribosome.
Length = 105
Score = 33.5 bits (77), Expect = 0.039
Identities = 8/20 (40%), Positives = 18/20 (90%)
Query: 1 EEEEEDEKKKKKKKKKEEEE 20
EEEE+E+++++++++E EE
Sbjct: 75 AEEEEEEEEEEEEEEEESEE 94
Score = 32.7 bits (75), Expect = 0.074
Identities = 9/20 (45%), Positives = 19/20 (95%)
Query: 1 EEEEEDEKKKKKKKKKEEEE 20
EEEEE+E+++++++++ EEE
Sbjct: 76 EEEEEEEEEEEEEEEESEEE 95
Score = 31.2 bits (71), Expect = 0.22
Identities = 7/20 (35%), Positives = 17/20 (85%)
Query: 1 EEEEEDEKKKKKKKKKEEEE 20
EEE+E+++++++++EE E
Sbjct: 74 AAEEEEEEEEEEEEEEEESE 93
Score = 30.0 bits (68), Expect = 0.72
Identities = 6/21 (28%), Positives = 16/21 (76%)
Query: 1 EEEEEDEKKKKKKKKKEEEEK 21
E+E+++++++++EEEE
Sbjct: 72 AAAAEEEEEEEEEEEEEEEES 92
Score = 29.6 bits (67), Expect = 0.96
Identities = 5/21 (23%), Positives = 16/21 (76%)
Query: 2 EEEEDEKKKKKKKKKEEEEKK 22
E+++++++++EEEE++
Sbjct: 71 AAAAAEEEEEEEEEEEEEEEE 91
Score = 28.9 bits (65), Expect = 1.4
Identities = 4/22 (18%), Positives = 16/22 (72%)
Query: 3 EEEDEKKKKKKKKKEEEEKKQK 24
+++++++++EEEE+++
Sbjct: 71 AAAAAEEEEEEEEEEEEEEEES 92
>gnl|CDD|149343 pfam08229, SHR3_chaperone, ER membrane protein SH3. This family of
proteins are membrane localised chaperones that are
required for correct plasma membrane localisation of
amino acid permeases (AAPs). SH3 prevents AAPs proteins
from aggregating and assists in their correct folding.
In the absence of SH3, AAPs are retained in the ER.
Length = 196
Score = 34.6 bits (80), Expect = 0.044
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKK 31
EE +E + K+EE + +KK+ KKKK
Sbjct: 166 EEFAAEEAEAAAAAKEEESAEGEKKESKKKK 196
Score = 27.7 bits (62), Expect = 8.5
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKK 32
EE E+ + KEEE + +K++ KKKK
Sbjct: 165 LEEFAAEEAEAAAAAKEEESAEGEKKESKKKK 196
>gnl|CDD|218737 pfam05764, YL1, YL1 nuclear protein. The proteins in this family
are designated YL1. These proteins have been shown to be
DNA-binding and may be a transcription factor.
Length = 238
Score = 35.0 bits (81), Expect = 0.046
Identities = 14/40 (35%), Positives = 23/40 (57%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNKVKPVH 40
E+E + E++ KKKK+ + + K+ +KKKKK K
Sbjct: 75 EKELQREERLKKKKRVKTKAYKEPTKKKKKKDPTAAKSPK 114
Score = 33.5 bits (77), Expect = 0.15
Identities = 14/37 (37%), Positives = 19/37 (51%)
Query: 2 EEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNKVKP 38
+ EE KKKK+ K K +E +KK+KK K
Sbjct: 79 QREERLKKKKRVKTKAYKEPTKKKKKKDPTAAKSPKA 115
Score = 33.1 bits (76), Expect = 0.19
Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQ-KKKKKKVNKVKP 38
E E+E +++++ KKKK + K K+ KKKKKK
Sbjct: 73 EGEKELQREERLKKKKRVKTKAYKEPTKKKKKKDPTAAK 111
Score = 32.7 bits (75), Expect = 0.23
Identities = 14/40 (35%), Positives = 22/40 (55%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNKVKPVH 40
+E + +E+ KKKK+ K + K+ K+KKKK P
Sbjct: 76 KELQREERLKKKKRVKTKAYKEPTKKKKKKDPTAAKSPKA 115
Score = 32.4 bits (74), Expect = 0.27
Identities = 11/38 (28%), Positives = 24/38 (63%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNKVKP 38
E ++E+E +K+ ++++ ++KK+ K K K+ K K
Sbjct: 67 ESDDEEEGEKELQREERLKKKKRVKTKAYKEPTKKKKK 104
Score = 32.4 bits (74), Expect = 0.30
Identities = 14/41 (34%), Positives = 23/41 (56%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNKVKPVHI 41
E E +DE++ +K+ ++EE KK+K+ K K K K
Sbjct: 65 EPESDDEEEGEKELQREERLKKKKRVKTKAYKEPTKKKKKK 105
Score = 27.7 bits (62), Expect = 8.7
Identities = 9/31 (29%), Positives = 21/31 (67%)
Query: 2 EEEEDEKKKKKKKKKEEEEKKQKKQKKKKKK 32
+E E + +++ +K+ + EE+ +KK++ K K
Sbjct: 64 DEPESDDEEEGEKELQREERLKKKKRVKTKA 94
>gnl|CDD|223880 COG0810, TonB, Periplasmic protein TonB, links inner and outer
membranes [Cell envelope biogenesis, outer membrane].
Length = 244
Score = 34.8 bits (80), Expect = 0.058
Identities = 14/38 (36%), Positives = 20/38 (52%)
Query: 2 EEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNKVKPV 39
E K K+K K +++ +K + K K K K KVKP
Sbjct: 77 PEPTPPKPKEKPKPEKKPKKPKPKPKPKPKPKPKVKPQ 114
Score = 32.5 bits (74), Expect = 0.32
Identities = 13/40 (32%), Positives = 20/40 (50%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNKVKPVH 40
+ E++ +K K K K K + + K K Q K KK +K
Sbjct: 89 KPEKKPKKPKPKPKPKPKPKPKVKPQPKPKKPPSKTAAKA 128
Score = 30.5 bits (69), Expect = 1.3
Identities = 10/35 (28%), Positives = 18/35 (51%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNK 35
E+ + ++K KK K K + + K + K K + K
Sbjct: 86 EKPKPEKKPKKPKPKPKPKPKPKPKVKPQPKPKKP 120
Score = 30.1 bits (68), Expect = 1.4
Identities = 12/43 (27%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
Query: 1 EEEEEDEKK--KKKKKKKEEEEKKQKKQKKKKKKVNKVKPVHI 41
E E++ K + + E K K++ K +KK K KP
Sbjct: 60 PEPPEEQPKPPTEPETPPEPTPPKPKEKPKPEKKPKKPKPKPK 102
Score = 30.1 bits (68), Expect = 1.4
Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQK-KQKKKKKKVNKVKPV 39
E + K+K K +K+ ++ K K K K K K K +P
Sbjct: 77 PEPTPPKPKEKPKPEKKPKKPKPKPKPKPKPKPKVKPQPK 116
Score = 29.4 bits (66), Expect = 2.9
Identities = 12/39 (30%), Positives = 18/39 (46%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNKVKPV 39
+ E E + K +E+ K +K+ KK K K KP
Sbjct: 68 KPPTEPETPPEPTPPKPKEKPKPEKKPKKPKPKPKPKPK 106
Score = 28.6 bits (64), Expect = 4.9
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKV 33
+E+ + EKK KK K K + + K K + K + K
Sbjct: 85 KEKPKPEKKPKKPKPKPKPKPKPKPKVKPQPKP 117
>gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit;
Provisional.
Length = 305
Score = 34.7 bits (80), Expect = 0.068
Identities = 16/33 (48%), Positives = 23/33 (69%)
Query: 5 EDEKKKKKKKKKEEEEKKQKKQKKKKKKVNKVK 37
+DEK KKK K+KE+ +K QK + KK+ K+K
Sbjct: 69 KDEKNKKKTKEKEKVLEKLVIQKTRFKKIKKIK 101
>gnl|CDD|203848 pfam08079, Ribosomal_L30_N, Ribosomal L30 N-terminal domain.
This presumed domain is found at the N-terminus of
Ribosomal L30 proteins and has been termed RL30NT or
NUC018.
Length = 71
Score = 31.8 bits (73), Expect = 0.070
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 9 KKKKKKKKEEEEKKQKKQKKKKKKVNKVK 37
KK+K+ E+ K+ K++ KK K K
Sbjct: 2 LLKKRKRNEKLRAKRAKKRAAKKAARKKK 30
Score = 28.0 bits (63), Expect = 1.8
Identities = 8/28 (28%), Positives = 16/28 (57%)
Query: 8 KKKKKKKKKEEEEKKQKKQKKKKKKVNK 35
KK+K+ +K + K++ KK +K +
Sbjct: 4 KKRKRNEKLRAKRAKKRAAKKAARKKKR 31
Score = 27.6 bits (62), Expect = 2.2
Identities = 9/25 (36%), Positives = 16/25 (64%)
Query: 6 DEKKKKKKKKKEEEEKKQKKQKKKK 30
+EK + K+ KK +K +K+K+K
Sbjct: 9 NEKLRAKRAKKRAAKKAARKKKRKL 33
Score = 27.2 bits (61), Expect = 3.3
Identities = 9/29 (31%), Positives = 18/29 (62%)
Query: 8 KKKKKKKKKEEEEKKQKKQKKKKKKVNKV 36
K+K+ +K + + KK+ +K +KK K+
Sbjct: 5 KRKRNEKLRAKRAKKRAAKKAARKKKRKL 33
>gnl|CDD|219901 pfam08555, DUF1754, Eukaryotic family of unknown function
(DUF1754). This is a eukaryotic protein family of
unknown function.
Length = 90
Score = 32.4 bits (74), Expect = 0.073
Identities = 11/26 (42%), Positives = 21/26 (80%)
Query: 7 EKKKKKKKKKEEEEKKQKKQKKKKKK 32
+KKKKKKKKK + +++ +K++++K
Sbjct: 20 KKKKKKKKKKNKSKEEVVTEKEEEEK 45
Score = 31.2 bits (71), Expect = 0.19
Identities = 10/32 (31%), Positives = 20/32 (62%)
Query: 6 DEKKKKKKKKKEEEEKKQKKQKKKKKKVNKVK 37
+ KKKKKKKK++ + K++ +K+++
Sbjct: 17 IDVKKKKKKKKKKNKSKEEVVTEKEEEEKSSA 48
Score = 30.5 bits (69), Expect = 0.35
Identities = 10/30 (33%), Positives = 21/30 (70%)
Query: 6 DEKKKKKKKKKEEEEKKQKKQKKKKKKVNK 35
+KKKKKKKK + +E+ ++++++K +
Sbjct: 20 KKKKKKKKKKNKSKEEVVTEKEEEEKSSAE 49
Score = 26.6 bits (59), Expect = 8.0
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 8 KKKKKKKKKEEEEKKQKKQKKKKKKVNKVKP 38
K K K K+ + KK+KK+KKKK K +
Sbjct: 7 GGKLKLKGKKIDVKKKKKKKKKKNKSKEEVV 37
>gnl|CDD|205206 pfam13025, DUF3886, Protein of unknown function (DUF3886). This
family of proteins is functionally uncharacterized.
This family of proteins is found in bacteria. Proteins
in this family are approximately 90 amino acids in
length. There are two completely conserved L residues
that may be functionally important.
Length = 70
Score = 31.5 bits (72), Expect = 0.083
Identities = 8/26 (30%), Positives = 21/26 (80%)
Query: 2 EEEEDEKKKKKKKKKEEEEKKQKKQK 27
+ EE++++++++ +K EE K+++K K
Sbjct: 30 KAEEEKREEEEEARKREERKEREKNK 55
Score = 29.6 bits (67), Expect = 0.50
Identities = 8/28 (28%), Positives = 23/28 (82%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKK 28
E + E+EK++++++ ++ EE+K++++ K
Sbjct: 28 ELKAEEEKREEEEEARKREERKEREKNK 55
Score = 28.5 bits (64), Expect = 1.2
Identities = 6/29 (20%), Positives = 23/29 (79%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKK 29
+E + +E+K++++++ + E++++++K K
Sbjct: 27 KELKAEEEKREEEEEARKREERKEREKNK 55
Score = 28.5 bits (64), Expect = 1.3
Identities = 10/26 (38%), Positives = 23/26 (88%)
Query: 10 KKKKKKKEEEEKKQKKQKKKKKKVNK 35
K +++K+EEEE+ +K++++K+++ NK
Sbjct: 30 KAEEEKREEEEEARKREERKEREKNK 55
Score = 28.1 bits (63), Expect = 1.6
Identities = 11/27 (40%), Positives = 21/27 (77%)
Query: 9 KKKKKKKKEEEEKKQKKQKKKKKKVNK 35
K KKK+ K EEEK++++++ +K++ K
Sbjct: 23 KAKKKELKAEEEKREEEEEARKREERK 49
Score = 27.3 bits (61), Expect = 2.8
Identities = 8/28 (28%), Positives = 25/28 (89%)
Query: 4 EEDEKKKKKKKKKEEEEKKQKKQKKKKK 31
+++ K +++K+++EEE +K++++K+++K
Sbjct: 26 KKELKAEEEKREEEEEARKREERKEREK 53
Score = 27.3 bits (61), Expect = 3.0
Identities = 7/30 (23%), Positives = 25/30 (83%)
Query: 3 EEEDEKKKKKKKKKEEEEKKQKKQKKKKKK 32
++E + +++K++++EE K++++++++K K
Sbjct: 26 KKELKAEEEKREEEEEARKREERKEREKNK 55
Score = 26.9 bits (60), Expect = 3.5
Identities = 9/25 (36%), Positives = 21/25 (84%)
Query: 8 KKKKKKKKKEEEEKKQKKQKKKKKK 32
K KKK+ K EEE+++++++ +K+++
Sbjct: 23 KAKKKELKAEEEKREEEEEARKREE 47
Score = 26.1 bits (58), Expect = 7.5
Identities = 6/30 (20%), Positives = 24/30 (80%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKK 30
++E + E++K++++++ + +++K+++K K
Sbjct: 26 KKELKAEEEKREEEEEARKREERKEREKNK 55
Score = 26.1 bits (58), Expect = 8.6
Identities = 8/29 (27%), Positives = 19/29 (65%)
Query: 4 EEDEKKKKKKKKKEEEEKKQKKQKKKKKK 32
D K K KKKE + +++K++++++ +
Sbjct: 15 NADLLAKLKAKKKELKAEEEKREEEEEAR 43
>gnl|CDD|218752 pfam05793, TFIIF_alpha, Transcription initiation factor IIF, alpha
subunit (TFIIF-alpha). Transcription initiation factor
IIF, alpha subunit (TFIIF-alpha) or RNA polymerase
II-associating protein 74 (RAP74) is the large subunit
of transcription factor IIF (TFIIF), which is essential
for accurate initiation and stimulates elongation by RNA
polymerase II.
Length = 528
Score = 34.6 bits (79), Expect = 0.10
Identities = 12/35 (34%), Positives = 22/35 (62%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNK 35
+ EE +E+K +++ ++ KK KK K KK ++K
Sbjct: 319 DSEESEEEKNEEEGGLSKKGKKLKKLKGKKNGLDK 353
Score = 33.4 bits (76), Expect = 0.19
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 2 EEEEDEKKKKKKKKKEEEEKKQKKQKKKKKK 32
E+ DE+K KKKKKK + KK+ KK K+
Sbjct: 233 GEDGDEEKSKKKKKKLAKNKKKLDDDKKGKR 263
Score = 33.0 bits (75), Expect = 0.27
Identities = 14/34 (41%), Positives = 21/34 (61%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVN 34
E+ ++EK KKKKKK + +KK KK K+ +
Sbjct: 233 GEDGDEEKSKKKKKKLAKNKKKLDDDKKGKRGGD 266
Score = 32.2 bits (73), Expect = 0.45
Identities = 10/37 (27%), Positives = 20/37 (54%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNKVK 37
E+ EE E++K +++ ++ K+ K+ K KK
Sbjct: 318 EDSEESEEEKNEEEGGLSKKGKKLKKLKGKKNGLDKD 354
Score = 30.3 bits (68), Expect = 1.7
Identities = 14/37 (37%), Positives = 22/37 (59%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNKVK 37
E E+DE ++ +++K EEE K+ KK KK+ K
Sbjct: 312 PEIEQDEDSEESEEEKNEEEGGLSKKGKKLKKLKGKK 348
Score = 29.9 bits (67), Expect = 2.3
Identities = 12/32 (37%), Positives = 19/32 (59%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKK 32
++ ED ++K KKKK++ K +KK KK
Sbjct: 230 DKGGEDGDEEKSKKKKKKLAKNKKKLDDDKKG 261
Score = 29.5 bits (66), Expect = 3.5
Identities = 12/33 (36%), Positives = 20/33 (60%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKV 33
+ E+ +++K KKKKK+ + K+K KK K
Sbjct: 231 KGGEDGDEEKSKKKKKKLAKNKKKLDDDKKGKR 263
Score = 28.0 bits (62), Expect = 9.7
Identities = 10/37 (27%), Positives = 22/37 (59%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNKVK 37
+ E E+ + ++ +EE+ +++ KK KK+ K+K
Sbjct: 309 PAKPEIEQDEDSEESEEEKNEEEGGLSKKGKKLKKLK 345
>gnl|CDD|100110 cd05832, Ribosomal_L12p, Ribosomal protein L12p. This subfamily
includes archaeal L12p, the protein that is
functionally equivalent to L7/L12 in bacteria and the
P1 and P2 proteins in eukaryotes. L12p is homologous to
P1 and P2 but is not homologous to bacterial L7/L12. It
is located in the L12 stalk, with proteins L10, L11,
and 23S rRNA. L12p is the only protein in the ribosome
to occur as multimers, always appearing as sets of
dimers. Recent data indicate that most archaeal species
contain six copies of L12p (three homodimers), while
eukaryotes have four copies (two heterodimers), and
bacteria may have four or six copies (two or three
homodimers), depending on the species. The organization
of proteins within the stalk has been characterized
primarily in bacteria, where L7/L12 forms either two or
three homodimers and each homodimer binds to the
extended C-terminal helix of L10. L7/L12 is attached to
the ribosome through L10 and is the only ribosomal
protein that does not directly interact with rRNA.
Archaeal L12p is believed to function in a similar
fashion. However, hybrid ribosomes containing the large
subunit from E. coli with an archaeal stalk are able to
bind archaeal and eukaryotic elongation factors but not
bacterial elongation factors. In several mesophilic and
thermophilic archaeal species, the binding of 23S rRNA
to protein L11 and to the L10/L12p pentameric complex
was found to be temperature-dependent and cooperative.
Length = 106
Score = 32.1 bits (73), Expect = 0.11
Identities = 9/26 (34%), Positives = 21/26 (80%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQ 26
EE ++K+++KKKEEE+++++++
Sbjct: 72 AAAEEKAEEKEEEKKKEEEKEEEEEE 97
Score = 29.8 bits (67), Expect = 0.67
Identities = 8/22 (36%), Positives = 17/22 (77%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKK 22
E++ ++K+++KK+EEEK+
Sbjct: 71 AAAAEEKAEEKEEEKKKEEEKE 92
>gnl|CDD|236080 PRK07734, motB, flagellar motor protein MotB; Reviewed.
Length = 259
Score = 33.2 bits (76), Expect = 0.19
Identities = 9/35 (25%), Positives = 23/35 (65%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNK 35
E E+ KKK++ + +++K+ ++ K +KK+++
Sbjct: 82 ASSLEAEQAKKKEEAEAKKKKEMEELKAVQKKIDQ 116
Score = 30.1 bits (68), Expect = 1.8
Identities = 13/35 (37%), Positives = 21/35 (60%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNK 35
+E + ++ KKKEE E K+KK+ ++ K V K
Sbjct: 78 KELSASSLEAEQAKKKEEAEAKKKKEMEELKAVQK 112
Score = 28.6 bits (64), Expect = 5.8
Identities = 8/37 (21%), Positives = 24/37 (64%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNKVK 37
E+E+E + ++ +++E+ + K+KK+ +++ V+
Sbjct: 75 EDEKELSASSLEAEQAKKKEEAEAKKKKEMEELKAVQ 111
Score = 27.8 bits (62), Expect = 8.2
Identities = 10/38 (26%), Positives = 25/38 (65%)
Query: 2 EEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNKVKPV 39
+ E++++ + E+ +KK++ + KKKK++ ++K V
Sbjct: 73 KPEDEKELSASSLEAEQAKKKEEAEAKKKKEMEELKAV 110
>gnl|CDD|177433 PHA02608, 67, prohead core protein; Provisional.
Length = 80
Score = 30.9 bits (70), Expect = 0.19
Identities = 5/31 (16%), Positives = 12/31 (38%)
Query: 2 EEEEDEKKKKKKKKKEEEEKKQKKQKKKKKK 32
EE ED+ + ++++ K +
Sbjct: 48 EEPEDDDDDEDDDDDDDKDDKDDDDDDDDED 78
Score = 28.2 bits (63), Expect = 1.7
Identities = 3/32 (9%), Positives = 12/32 (37%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKK 32
E EE ++ + ++++ + +
Sbjct: 46 EGEEPEDDDDDEDDDDDDDKDDKDDDDDDDDE 77
Score = 27.4 bits (61), Expect = 3.3
Identities = 3/29 (10%), Positives = 13/29 (44%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKK 29
E+++D++ K++++ +
Sbjct: 50 PEDDDDDEDDDDDDDKDDKDDDDDDDDED 78
Score = 27.4 bits (61), Expect = 3.7
Identities = 5/31 (16%), Positives = 13/31 (41%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKK 31
EE E+D+ + ++++K +
Sbjct: 48 EEPEDDDDDEDDDDDDDKDDKDDDDDDDDED 78
>gnl|CDD|201540 pfam00992, Troponin, Troponin. Troponin (Tn) contains three
subunits, Ca2+ binding (TnC), inhibitory (TnI), and
tropomyosin binding (TnT). this Pfam contains members of
the TnT subunit. Troponin is a complex of three
proteins, Ca2+ binding (TnC), inhibitory (TnI), and
tropomyosin binding (TnT). The troponin complex
regulates Ca++ induced muscle contraction. This family
includes troponin T and troponin I. Troponin I binds to
actin and troponin T binds to tropomyosin.
Length = 131
Score = 31.8 bits (73), Expect = 0.19
Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 11/46 (23%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQ---------KKQ--KKKKKKVNK 35
+EE D ++K KK KE E+ K+ KK KK +K +
Sbjct: 62 DEERYDIEEKVAKKDKEIEDLKKKVNDLRGKFKKPTLKKVRKSADA 107
>gnl|CDD|219563 pfam07767, Nop53, Nop53 (60S ribosomal biogenesis). This nucleolar
family of proteins are involved in 60S ribosomal
biogenesis. They are specifically involved in the
processing beyond the 27S stage of 25S rRNA maturation.
This family contains sequences that bear similarity to
the glioma tumour suppressor candidate region gene 2
protein (p60). This protein has been found to interact
with herpes simplex type 1 regulatory proteins.
Length = 387
Score = 33.1 bits (76), Expect = 0.23
Identities = 8/32 (25%), Positives = 19/32 (59%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKK 32
E E K + K+K + + K+K++K+ +++
Sbjct: 264 SEYEPINKPVRPKRKTKAQRNKEKRRKELERE 295
Score = 32.8 bits (75), Expect = 0.33
Identities = 11/30 (36%), Positives = 22/30 (73%)
Query: 8 KKKKKKKKKEEEEKKQKKQKKKKKKVNKVK 37
K+K++K+ E E K++K+ KKK ++ ++K
Sbjct: 284 NKEKRRKELEREAKEEKQLKKKLAQLARLK 313
Score = 31.6 bits (72), Expect = 0.60
Identities = 11/38 (28%), Positives = 23/38 (60%), Gaps = 4/38 (10%)
Query: 3 EEEDEKKKKKKKKKE----EEEKKQKKQKKKKKKVNKV 36
++K K ++ KE E E++ K++K+ KKK+ ++
Sbjct: 272 PVRPKRKTKAQRNKEKRRKELEREAKEEKQLKKKLAQL 309
Score = 29.3 bits (66), Expect = 3.2
Identities = 11/33 (33%), Positives = 22/33 (66%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKV 33
++E+ +KK+++K+ E+KK K++K K K
Sbjct: 320 AQKEKARARKKEQRKERGEKKKLKRRKLGKHKY 352
Score = 28.5 bits (64), Expect = 5.6
Identities = 10/30 (33%), Positives = 21/30 (70%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKK 30
+E + EK + +KK++ +E ++KK K++K
Sbjct: 317 KEVAQKEKARARKKEQRKERGEKKKLKRRK 346
Score = 28.5 bits (64), Expect = 6.1
Identities = 12/35 (34%), Positives = 26/35 (74%)
Query: 3 EEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNKVK 37
+E +K+K + +KKE+ +++ +K+K K++K+ K K
Sbjct: 317 KEVAQKEKARARKKEQRKERGEKKKLKRRKLGKHK 351
Score = 28.5 bits (64), Expect = 7.2
Identities = 9/32 (28%), Positives = 16/32 (50%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKK 32
EEE D++ + + E E + + K+K K
Sbjct: 249 GEEESDDESAWEGFESEYEPINKPVRPKRKTK 280
>gnl|CDD|206039 pfam13868, Trichoplein, Tumour suppressor, Mitostatin. Trichoplein
or mitostatin, was first defined as a meiosis-specific
nuclear structural protein. It has since been linked
with mitochondrial movement. It is associated with the
mitochondrial outer membrane, and over-expression leads
to reduction in mitochondrial motility whereas lack of
it enhances mitochondrial movement. The activity appears
to be mediated through binding the mitochondria to the
actin intermediate filaments (IFs).
Length = 349
Score = 33.0 bits (76), Expect = 0.23
Identities = 11/35 (31%), Positives = 24/35 (68%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNK 35
E+E E ++K++K+KK EE + +++ ++K+ K
Sbjct: 111 EDEAEAQEKREKQKKLREEIDEFNEERIERKEEEK 145
Score = 31.4 bits (72), Expect = 0.70
Identities = 9/41 (21%), Positives = 29/41 (70%), Gaps = 5/41 (12%)
Query: 1 EEEEEDEK-----KKKKKKKKEEEEKKQKKQKKKKKKVNKV 36
E EE+ K ++K ++++E E ++++++++K+++V ++
Sbjct: 147 REREEELKILEYQREKAEREEEREAERRERKEEKEREVARL 187
Score = 31.0 bits (71), Expect = 0.89
Identities = 11/31 (35%), Positives = 22/31 (70%)
Query: 2 EEEEDEKKKKKKKKKEEEEKKQKKQKKKKKK 32
EEE E+++ +K+ E+EE +Q+ +K++ K
Sbjct: 255 AEEEAERERMLEKQAEDEELEQENAEKRRMK 285
Score = 30.3 bits (69), Expect = 1.8
Identities = 10/38 (26%), Positives = 27/38 (71%), Gaps = 6/38 (15%)
Query: 1 EEEEEDEKK------KKKKKKKEEEEKKQKKQKKKKKK 32
EE+E+E++ +++ K EEE++++K+K+++++
Sbjct: 34 AEEKEEERRIDEMMEEERLKALAEEEERERKRKEERRE 71
Score = 30.3 bits (69), Expect = 2.0
Identities = 11/38 (28%), Positives = 26/38 (68%), Gaps = 5/38 (13%)
Query: 1 EEEEEDEKK-----KKKKKKKEEEEKKQKKQKKKKKKV 33
E E E+E K ++K +++EE E +++++K++K++
Sbjct: 146 EREREEELKILEYQREKAEREEEREAERRERKEEKERE 183
Score = 29.5 bits (67), Expect = 3.3
Identities = 10/35 (28%), Positives = 23/35 (65%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNK 35
EEE E E+ +K+ + EE E++ ++++ K+ ++
Sbjct: 256 EEEAERERMLEKQAEDEELEQENAEKRRMKRLEHR 290
Score = 29.1 bits (66), Expect = 3.7
Identities = 8/32 (25%), Positives = 22/32 (68%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKK 32
EEE + +++++K++KE E + + Q+++ +
Sbjct: 165 REEEREAERRERKEEKEREVARLRAQQEEAED 196
Score = 28.7 bits (65), Expect = 5.6
Identities = 6/38 (15%), Positives = 24/38 (63%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNKVKP 38
E E+E ++ ++ ++EE E++ + ++++++ + +
Sbjct: 305 AAEREEELEEGERLREEEAERQARIEEERQRLLKEHAE 342
Score = 28.7 bits (65), Expect = 5.7
Identities = 8/32 (25%), Positives = 24/32 (75%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKK 32
EEEE + K+K+++++ ++Q ++++K+++
Sbjct: 57 EEEERERKRKEERREGRAVLQEQIEEREKRRQ 88
Score = 28.3 bits (64), Expect = 6.9
Identities = 8/35 (22%), Positives = 24/35 (68%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNK 35
EE DE ++++ K EE+++++++K++++ +
Sbjct: 39 EERRIDEMMEEERLKALAEEEERERKRKEERREGR 73
>gnl|CDD|215914 pfam00428, Ribosomal_60s, 60s Acidic ribosomal protein. This
family includes archaebacterial L12, eukaryotic P0, P1
and P2.
Length = 88
Score = 30.7 bits (70), Expect = 0.28
Identities = 6/20 (30%), Positives = 14/20 (70%)
Query: 1 EEEEEDEKKKKKKKKKEEEE 20
E++KK+++++EEE+
Sbjct: 61 AAAAAAEEEKKEEEEEEEED 80
Score = 29.9 bits (68), Expect = 0.44
Identities = 5/20 (25%), Positives = 15/20 (75%)
Query: 1 EEEEEDEKKKKKKKKKEEEE 20
+E+KK++++++EE++
Sbjct: 62 AAAAAEEEKKEEEEEEEEDD 81
>gnl|CDD|217286 pfam02919, Topoisom_I_N, Eukaryotic DNA topoisomerase I, DNA
binding fragment. Topoisomerase I promotes the
relaxation of DNA superhelical tension by introducing a
transient single-stranded break in duplex DNA and are
vital for the processes of replication, transcription,
and recombination. This family may be more than one
structural domain.
Length = 215
Score = 32.2 bits (74), Expect = 0.29
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 7 EKKKKKKKKKEEEEKKQKKQKKKKKK 32
E +K+KKK +EEKK K++K K +
Sbjct: 96 EAEKEKKKAMSKEEKKAIKEEKDKLE 121
Score = 29.1 bits (66), Expect = 3.3
Identities = 10/27 (37%), Positives = 19/27 (70%)
Query: 6 DEKKKKKKKKKEEEEKKQKKQKKKKKK 32
+ +K+KKK +EE+K K++K K ++
Sbjct: 96 EAEKEKKKAMSKEEKKAIKEEKDKLEE 122
>gnl|CDD|235322 PRK04950, PRK04950, ProP expression regulator; Provisional.
Length = 213
Score = 32.2 bits (74), Expect = 0.30
Identities = 6/32 (18%), Positives = 18/32 (56%)
Query: 7 EKKKKKKKKKEEEEKKQKKQKKKKKKVNKVKP 38
++ +++ KK E +++K ++++K P
Sbjct: 112 AQRAEQQAKKREAAGEKEKAPRRERKPKPKAP 143
Score = 31.4 bits (72), Expect = 0.54
Identities = 7/31 (22%), Positives = 18/31 (58%)
Query: 8 KKKKKKKKKEEEEKKQKKQKKKKKKVNKVKP 38
+ +++ KK+E +K+K ++++K K
Sbjct: 114 RAEQQAKKREAAGEKEKAPRRERKPKPKAPR 144
Score = 31.4 bits (72), Expect = 0.54
Identities = 7/31 (22%), Positives = 18/31 (58%)
Query: 8 KKKKKKKKKEEEEKKQKKQKKKKKKVNKVKP 38
+++ KK++ E++K ++++K K K
Sbjct: 116 EQQAKKREAAGEKEKAPRRERKPKPKAPRKK 146
Score = 31.4 bits (72), Expect = 0.62
Identities = 6/31 (19%), Positives = 18/31 (58%)
Query: 8 KKKKKKKKKEEEEKKQKKQKKKKKKVNKVKP 38
+++ KK++ EK++ ++++K K +
Sbjct: 115 AEQQAKKREAAGEKEKAPRRERKPKPKAPRK 145
Score = 31.0 bits (71), Expect = 0.76
Identities = 11/40 (27%), Positives = 23/40 (57%)
Query: 2 EEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNKVKPVHI 41
++ E +K+K ++E + K + +KK+K + K +P H
Sbjct: 120 KKREAAGEKEKAPRRERKPKPKAPRKKRKPRAQKPEPQHT 159
Score = 29.9 bits (68), Expect = 1.6
Identities = 9/39 (23%), Positives = 22/39 (56%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNKVKPV 39
E E EK ++++K + + ++K++ + +K + PV
Sbjct: 123 EAAGEKEKAPRRERKPKPKAPRKKRKPRAQKPEPQHTPV 161
Score = 29.5 bits (67), Expect = 2.2
Identities = 10/32 (31%), Positives = 20/32 (62%)
Query: 7 EKKKKKKKKKEEEEKKQKKQKKKKKKVNKVKP 38
E++ KK++ E+EK ++++K K K + K
Sbjct: 116 EQQAKKREAAGEKEKAPRRERKPKPKAPRKKR 147
Score = 28.7 bits (65), Expect = 3.9
Identities = 10/38 (26%), Positives = 21/38 (55%), Gaps = 3/38 (7%)
Query: 4 EEDEKKKK---KKKKKEEEEKKQKKQKKKKKKVNKVKP 38
E+ KK++ +K+K E+K K + +KK+ + +
Sbjct: 116 EQQAKKREAAGEKEKAPRRERKPKPKAPRKKRKPRAQK 153
Score = 28.4 bits (64), Expect = 5.7
Identities = 5/31 (16%), Positives = 18/31 (58%)
Query: 9 KKKKKKKKEEEEKKQKKQKKKKKKVNKVKPV 39
++ +++ K+ E +K++ ++++ K K
Sbjct: 113 QRAEQQAKKREAAGEKEKAPRRERKPKPKAP 143
>gnl|CDD|129661 TIGR00570, cdk7, CDK-activating kinase assembly factor MAT1. All
proteins in this family for which functions are known
are cyclin dependent protein kinases that are components
of TFIIH, a complex that is involved in nucleotide
excision repair and transcription initiation. Also known
as MAT1 (menage a trois 1). This family is based on the
phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis,
Stanford University) [DNA metabolism, DNA replication,
recombination, and repair].
Length = 309
Score = 32.5 bits (74), Expect = 0.33
Identities = 12/36 (33%), Positives = 27/36 (75%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNKV 36
E E+E+E++++ +KEEEE++ K+K K+ ++++
Sbjct: 152 EFEKEEEEQRRLLLQKEEEEQQMNKRKNKQALLDEL 187
Score = 29.8 bits (67), Expect = 2.7
Identities = 11/34 (32%), Positives = 25/34 (73%), Gaps = 2/34 (5%)
Query: 1 EEEEEDEKKKKKKKKK--EEEEKKQKKQKKKKKK 32
EE E EK+++++++ ++EE++Q+ K+K K+
Sbjct: 148 EEALEFEKEEEEQRRLLLQKEEEEQQMNKRKNKQ 181
>gnl|CDD|240577 cd12950, RRP7_Rrp7p, RRP7 domain ribosomal RNA-processing protein 7
(Rrp7p) and similar proteins. This CD corresponds to
the RRP7 domain of Rrp7p. Rrp7p is encoded by YCL031C
gene from Saccharomyces cerevisiae. It is an essential
yeast protein involved in pre-rRNA processing and
ribosome assembly. Rrp7p contains an N-terminal RNA
recognition motif (RRM), also termed RBD (RNA binding
domain) or RNP (ribonucleoprotein domain), and a
C-terminal RRP7 domain.
Length = 128
Score = 31.1 bits (71), Expect = 0.34
Identities = 18/33 (54%), Positives = 26/33 (78%), Gaps = 2/33 (6%)
Query: 1 EEEEEDEKKKKKKKKKEEEE--KKQKKQKKKKK 31
EEE+ EK+KKKKKKKE E+ + Q ++KKK++
Sbjct: 74 AEEEKKEKEKKKKKKKELEDFYRFQLREKKKEE 106
Score = 27.6 bits (62), Expect = 6.5
Identities = 13/42 (30%), Positives = 24/42 (57%), Gaps = 10/42 (23%)
Query: 3 EEEDEKKKKKKKKKEEEEKKQKKQK----------KKKKKVN 34
EE K +++KK++E++KK+KK+ KKK++
Sbjct: 67 GEEAGKAAEEEKKEKEKKKKKKKELEDFYRFQLREKKKEEQA 108
>gnl|CDD|237629 PRK14160, PRK14160, heat shock protein GrpE; Provisional.
Length = 211
Score = 32.0 bits (73), Expect = 0.39
Identities = 10/35 (28%), Positives = 20/35 (57%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNK 35
EE E++E + ++ E + ++ K + K K+ NK
Sbjct: 37 EEIEKEEIIEDSEESNEVKIEELKDENNKLKEENK 71
Score = 28.6 bits (64), Expect = 4.5
Identities = 12/37 (32%), Positives = 24/37 (64%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNKVK 37
EE+ E E+ +K++ ++ EE + K ++ K + NK+K
Sbjct: 31 EEDLEFEEIEKEEIIEDSEESNEVKIEELKDENNKLK 67
>gnl|CDD|238356 cd00660, Topoisomer_IB_N, Topoisomer_IB_N: N-terminal DNA binding
fragment found in eukaryotic DNA topoisomerase (topo) IB
proteins similar to the monomeric yeast and human topo I
and heterodimeric topo I from Leishmania donvanni. Topo
I enzymes are divided into: topo type IA (bacterial)
and type IB (eukaryotic). Topo I relaxes superhelical
tension in duplex DNA by creating a single-strand nick,
the broken strand can then rotate around the unbroken
strand to remove DNA supercoils and, the nick is
religated, liberating topo I. These enzymes regulate the
topological changes that accompany DNA replication,
transcription and other nuclear processes. Human topo I
is the target of a diverse set of anticancer drugs
including camptothecins (CPTs). CPTs bind to the topo
I-DNA complex and inhibit re-ligation of the
single-strand nick, resulting in the accumulation of
topo I-DNA adducts. In addition to differences in
structure and some biochemical properties,
Trypanosomatid parasite topo I differ from human topo I
in their sensitivity to CPTs and other classical topo I
inhibitors. Trypanosomatid topos I play putative roles
in organizing the kinetoplast DNA network unique to
these parasites. This family may represent more than
one structural domain.
Length = 215
Score = 31.9 bits (73), Expect = 0.39
Identities = 12/25 (48%), Positives = 19/25 (76%)
Query: 7 EKKKKKKKKKEEEEKKQKKQKKKKK 31
E++K+KKK +EEKK K++K+K
Sbjct: 95 EEEKEKKKAMSKEEKKAIKEEKEKL 119
Score = 28.0 bits (63), Expect = 7.5
Identities = 11/27 (40%), Positives = 21/27 (77%)
Query: 6 DEKKKKKKKKKEEEEKKQKKQKKKKKK 32
+E+K+KKK +EE+K K++K+K ++
Sbjct: 95 EEEKEKKKAMSKEEKKAIKEEKEKLEE 121
>gnl|CDD|220383 pfam09756, DDRGK, DDRGK domain. This is a family of proteins of
approximately 300 residues, found in plants and
vertebrates. They contain a highly conserved DDRGK
motif.
Length = 189
Score = 31.6 bits (72), Expect = 0.44
Identities = 13/30 (43%), Positives = 27/30 (90%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKK 30
E +EE+E +++++KKKEEEE+K+++++ +K
Sbjct: 41 ERKEEEELEEEREKKKEEEERKEREEQARK 70
Score = 31.6 bits (72), Expect = 0.50
Identities = 15/31 (48%), Positives = 26/31 (83%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKK 31
E EEE EKKK+++++KE EE+ +K+Q++ +K
Sbjct: 47 ELEEEREKKKEEEERKEREEQARKEQEEYEK 77
Score = 30.4 bits (69), Expect = 1.1
Identities = 11/32 (34%), Positives = 27/32 (84%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKK 32
EEEE +E+KK ++K++ E +++++ +++++KK
Sbjct: 24 EEEEREERKKLEEKREGERKEEEELEEEREKK 55
Score = 29.3 bits (66), Expect = 2.5
Identities = 9/27 (33%), Positives = 21/27 (77%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQK 27
++EEE+ K+++++ +KE+EE ++ K
Sbjct: 55 KKEEEERKEREEQARKEQEEYEKLKSS 81
Score = 28.9 bits (65), Expect = 3.3
Identities = 12/34 (35%), Positives = 26/34 (76%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVN 34
EEE E+ KK ++K++ E +E+++ +++++KKK
Sbjct: 25 EEEREERKKLEEKREGERKEEEELEEEREKKKEE 58
Score = 28.5 bits (64), Expect = 3.9
Identities = 13/37 (35%), Positives = 32/37 (86%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNKVK 37
+EEEE E++++KKK++EE ++++++ +K++++ K+K
Sbjct: 43 KEEEELEEEREKKKEEEERKEREEQARKEQEEYEKLK 79
Score = 27.4 bits (61), Expect = 9.9
Identities = 10/31 (32%), Positives = 25/31 (80%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKK 31
E EEE+ +++KK ++K E E+K++++ ++++
Sbjct: 22 EAEEEEREERKKLEEKREGERKEEEELEEER 52
>gnl|CDD|214661 smart00435, TOPEUc, DNA Topoisomerase I (eukaryota). DNA
Topoisomerase I (eukaryota), DNA topoisomerase V,
Vaccina virus topoisomerase, Variola virus
topoisomerase, Shope fibroma virus topoisomeras.
Length = 391
Score = 32.3 bits (74), Expect = 0.46
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNKV 36
E D K+K K K + + EK + K+KKK+ K
Sbjct: 303 FEMISDLKRKLKSKFERDNEKLDAEVKEKKKEKKKE 338
Score = 31.2 bits (71), Expect = 0.90
Identities = 13/37 (35%), Positives = 30/37 (81%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNKVK 37
+ E+ D + K+KKK+K++EEKK+K+ ++ ++++ K++
Sbjct: 320 DNEKLDAEVKEKKKEKKKEEKKKKQIERLEERIEKLE 356
Score = 29.2 bits (66), Expect = 3.6
Identities = 11/33 (33%), Positives = 26/33 (78%)
Query: 3 EEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNK 35
E ++EK + K+K++E+KK++K+KK+ +++ +
Sbjct: 318 ERDNEKLDAEVKEKKKEKKKEEKKKKQIERLEE 350
Score = 28.1 bits (63), Expect = 9.0
Identities = 12/36 (33%), Positives = 18/36 (50%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNKV 36
E + K+K K K E + +K + K+KKK K
Sbjct: 302 LFEMISDLKRKLKSKFERDNEKLDAEVKEKKKEKKK 337
>gnl|CDD|221466 pfam12220, U1snRNP70_N, U1 small nuclear ribonucleoprotein of
70kDa MW N terminal. This domain is found in
eukaryotes. This domain is about 90 amino acids in
length. This domain is found associated with pfam00076.
This domain is part of U1 snRNP, which is the pre-mRNA
binding protein of the penta-snRNP spliceosome complex.
It extends over a distance of 180 A from its RNA
binding domain, wraps around the core domain of U1
snRNP consisting of the seven Sm proteins and finally
contacts U1-C, which is crucial for 5'-splice-site
recognition.
Length = 94
Score = 29.9 bits (68), Expect = 0.48
Identities = 9/41 (21%), Positives = 26/41 (63%), Gaps = 7/41 (17%)
Query: 1 EEEEEDEKK-------KKKKKKKEEEEKKQKKQKKKKKKVN 34
+ ++E + K++++K+E++EK +KK +++ K+ +
Sbjct: 49 DYKDEPPPEPTETWLEKREREKREKKEKLEKKLEEELKEWD 89
>gnl|CDD|240341 PTZ00272, PTZ00272, heat shock protein 83 kDa (Hsp83); Provisional.
Length = 701
Score = 32.3 bits (73), Expect = 0.51
Identities = 15/39 (38%), Positives = 25/39 (64%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNKVKPV 39
+E+EED KK + ++ + E+ ++ + KKKK KVK V
Sbjct: 217 DEDEEDTKKADEDGEEPKVEEVKEGDEGKKKKTKKVKEV 255
>gnl|CDD|219913 pfam08576, DUF1764, Eukaryotic protein of unknown function
(DUF1764). This is a family of eukaryotic proteins of
unknown function. This family contains many
hypothetical proteins.
Length = 98
Score = 30.1 bits (68), Expect = 0.51
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 8 KKKKKKKKKEEEEKKQKKQKKKKKKVNK 35
KK+KKKKK+ + + K KK +KK K
Sbjct: 22 KKRKKKKKRTAKTARPKATKKGQKKDKK 49
>gnl|CDD|219564 pfam07771, TSGP1, Tick salivary peptide group 1. This contains a
group of peptides derived from a salivary gland cDNA
library of the tick Ixodes scapularis. Also present are
peptides from a related tick species, Ixodes ricinus.
They are characterized by a putative signal peptide
indicative of secretion and conserved cysteine residues.
Length = 120
Score = 30.6 bits (69), Expect = 0.55
Identities = 14/27 (51%), Positives = 17/27 (62%)
Query: 4 EEDEKKKKKKKKKEEEEKKQKKQKKKK 30
E +K KKKKKK ++ KK KK KK
Sbjct: 94 PEPTEKPKKKKKKSKKTKKPKKSSKKD 120
Score = 29.8 bits (67), Expect = 0.83
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQK 27
E E KKKKKK KK ++ KK K+
Sbjct: 94 PEPTEKPKKKKKKSKKTKKPKKSSKKD 120
Score = 29.8 bits (67), Expect = 0.85
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 3 EEEDEKKKKKKKKKEEEEKKQKKQKKK 29
E EK KKKKKK ++ +K +K KK
Sbjct: 94 PEPTEKPKKKKKKSKKTKKPKKSSKKD 120
Score = 27.5 bits (61), Expect = 5.4
Identities = 10/27 (37%), Positives = 17/27 (62%)
Query: 2 EEEEDEKKKKKKKKKEEEEKKQKKQKK 28
E ++ KKKKKK K+ ++ K+ +K
Sbjct: 94 PEPTEKPKKKKKKSKKTKKPKKSSKKD 120
>gnl|CDD|227492 COG5163, NOP7, Protein required for biogenesis of the 60S ribosomal
subunit [Translation, ribosomal structure and
biogenesis].
Length = 591
Score = 32.0 bits (72), Expect = 0.58
Identities = 17/42 (40%), Positives = 26/42 (61%), Gaps = 6/42 (14%)
Query: 2 EEEEDEKKKKKKKKKEEEEKKQKKQK------KKKKKVNKVK 37
E ++D K K KK+K +EE+++KK K K+KK K+K
Sbjct: 520 EADKDVNKSKNKKRKVDEEEEEKKLKMIMMSNKQKKLYKKMK 561
Score = 28.9 bits (64), Expect = 4.9
Identities = 11/38 (28%), Positives = 23/38 (60%)
Query: 3 EEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNKVKPVH 40
E + + K K KK++ +E++++K+ K NK K ++
Sbjct: 520 EADKDVNKSKNKKRKVDEEEEEKKLKMIMMSNKQKKLY 557
Score = 28.1 bits (62), Expect = 9.2
Identities = 9/30 (30%), Positives = 17/30 (56%)
Query: 2 EEEEDEKKKKKKKKKEEEEKKQKKQKKKKK 31
E E +K K K K+ + +++++KK K
Sbjct: 517 ETSEADKDVNKSKNKKRKVDEEEEEKKLKM 546
>gnl|CDD|150531 pfam09871, DUF2098, Uncharacterized protein conserved in archaea
(DUF2098). This domain, found in various hypothetical
prokaryotic proteins, has no known function.
Length = 91
Score = 29.6 bits (67), Expect = 0.61
Identities = 9/31 (29%), Positives = 22/31 (70%)
Query: 3 EEEDEKKKKKKKKKEEEEKKQKKQKKKKKKV 33
++ EKK+++++ KEE ++ KK+++ + V
Sbjct: 50 DKVKEKKEEREEDKEELIERIKKEEETFEDV 80
>gnl|CDD|220431 pfam09831, DUF2058, Uncharacterized protein conserved in bacteria
(DUF2058). This domain, found in various prokaryotic
proteins, has no known function.
Length = 177
Score = 31.0 bits (71), Expect = 0.66
Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 4/26 (15%)
Query: 8 KKKKKKKKKEEEEKKQKKQKKKKKKV 33
KKK KK KKE K+K++K+ +K
Sbjct: 14 KKKAKKAKKE----KRKQRKQARKGA 35
Score = 30.3 bits (69), Expect = 1.1
Identities = 13/26 (50%), Positives = 18/26 (69%), Gaps = 3/26 (11%)
Query: 6 DEKKKKKKKKKEEEEKKQKKQKKKKK 31
D+KK KK KK E++KQ+KQ +K
Sbjct: 13 DKKKAKKAKK---EKRKQRKQARKGA 35
>gnl|CDD|216337 pfam01159, Ribosomal_L6e, Ribosomal protein L6e.
Length = 108
Score = 29.9 bits (68), Expect = 0.69
Identities = 15/28 (53%), Positives = 21/28 (75%), Gaps = 3/28 (10%)
Query: 8 KKKKKKKKKEEE---EKKQKKQKKKKKK 32
+KKKKKKK E E EKK+KK+ +++K
Sbjct: 40 EKKKKKKKSEGEFFAEKKEKKEVSEQRK 67
>gnl|CDD|235778 PRK06319, PRK06319, DNA topoisomerase I/SWI domain fusion protein;
Validated.
Length = 860
Score = 31.7 bits (72), Expect = 0.75
Identities = 14/32 (43%), Positives = 15/32 (46%)
Query: 7 EKKKKKKKKKEEEEKKQKKQKKKKKKVNKVKP 38
EKK K KKK + K K KKK K K
Sbjct: 748 EKKTKAKKKSASTKGKAAKTVKKKSKAKSKKT 779
Score = 29.4 bits (66), Expect = 3.9
Identities = 12/35 (34%), Positives = 17/35 (48%)
Query: 3 EEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNKVK 37
E++ + KKK K + K KK+ K K K K
Sbjct: 748 EKKTKAKKKSASTKGKAAKTVKKKSKAKSKKTTKK 782
>gnl|CDD|215521 PLN02967, PLN02967, kinase.
Length = 581
Score = 31.6 bits (71), Expect = 0.76
Identities = 11/41 (26%), Positives = 26/41 (63%), Gaps = 6/41 (14%)
Query: 3 EEEDEKKKKKKKKK------EEEEKKQKKQKKKKKKVNKVK 37
++E +K ++ ++K + EE+K +K+ +K++KV K+
Sbjct: 107 DKESKKTPRRTRRKAAAASSDVEEEKTEKKVRKRRKVKKMD 147
>gnl|CDD|214818 smart00784, SPT2, SPT2 chromatin protein. This entry includes the
Saccharomyces cerevisiae protein SPT2 which is a
chromatin protein involved in transcriptional
regulation.
Length = 106
Score = 29.7 bits (67), Expect = 0.78
Identities = 8/32 (25%), Positives = 21/32 (65%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKK 32
EEE + + + ++EE +K+++++K+ +K
Sbjct: 73 EEERRSARLARLEDREEERLEKEEEREKRARK 104
>gnl|CDD|241471 cd13317, PH_PLEKHO1_PLEKHO2, Pleckstrin homology
domain-containing family O Pleckstrin homology domain.
The PLEKHO family members are PLEKHO1 (also called
CKIP-1/Casein kinase 2-interacting protein
1/CK2-interacting protein 1) and PLEKHO2 (PLEKHQ1/PH
domain-containing family Q member 1). They both contain
a single PH domain. PLEKHO1 acts as a scaffold protein
that functions in plasma membrane recruitment,
transcriptional activity modulation, and
posttranscriptional modification regulation. As an
adaptor protein it is involved in signaling pathways,
apoptosis, differentiation, cytoskeleton, and bone
formation. Not much is know about PLEKHO2. PH domains
have diverse functions, but in general are involved in
targeting proteins to the appropriate cellular location
or in the interaction with a binding partner. They
share little sequence conservation, but all have a
common fold, which is electrostatically polarized. Less
than 10% of PH domains bind phosphoinositide phosphates
(PIPs) with high affinity and specificity. PH domains
are distinguished from other PIP-binding domains by
their specific high-affinity binding to PIPs with two
vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2
or PtdIns(3,4,5)P3 which results in targeting some PH
domain proteins to the plasma membrane. A few display
strong specificity in lipid binding. Any specificity is
usually determined by loop regions or insertions in the
N-terminus of the domain, which are not conserved
across all PH domains. PH domains are found in cellular
signaling proteins such as serine/threonine kinase,
tyrosine kinases, regulators of G-proteins, endocytotic
GTPases, adaptors, as well as cytoskeletal associated
molecules and in lipid associated enzymes.
Length = 101
Score = 29.8 bits (67), Expect = 0.81
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 3 EEEDEKKKKKKKKKEEEEKKQKKQKKKKKK 32
E+E E + + E + QK + KKK+K
Sbjct: 38 EKEQEVFDLEDYELCEYLRCQKSRSKKKRK 67
>gnl|CDD|204122 pfam09072, TMA7, Translation machinery associated TMA7. TMA7
plays a role in protein translation. Deletions of the
TMA7 gene results in altered protein synthesis rates.
Length = 63
Score = 28.7 bits (64), Expect = 0.81
Identities = 10/30 (33%), Positives = 18/30 (60%)
Query: 2 EEEEDEKKKKKKKKKEEEEKKQKKQKKKKK 31
E +E++ K+K+K+E + K+ K K K
Sbjct: 20 ELDEEDLAFKQKQKEEAKALKELAAKAKGK 49
Score = 27.1 bits (60), Expect = 3.2
Identities = 11/32 (34%), Positives = 19/32 (59%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKK 32
+++E DE+ K+K++EE K K+ K K
Sbjct: 17 QKKELDEEDLAFKQKQKEEAKALKELAAKAKG 48
Score = 26.0 bits (57), Expect = 7.4
Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 6/30 (20%)
Query: 9 KKKKKKKKEEEE------KKQKKQKKKKKK 32
K KK+KKE +E +KQK++ K K+
Sbjct: 12 KAPKKQKKELDEEDLAFKQKQKEEAKALKE 41
>gnl|CDD|240520 cd13156, KOW_RPL6, KOW motif of Ribosomal Protein L6. RPL6
contains KOW motif that has an extra ribosomal role as
an oncogenic. KOW domain is known as an RNA-binding
motif that is shared so far among some families of
ribosomal proteins, the essential bacterial
transcriptional elongation factor NusG, the eukaryotic
chromatin elongation factor Spt5, the higher eukaryotic
KIN17 proteins and Mtr4. .
Length = 152
Score = 30.2 bits (69), Expect = 0.82
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 8 KKKKKKKKKEEEEKKQKKQKKKKKKVNKVK 37
+KKKKKKKK+E E ++K+KK + +
Sbjct: 83 RKKKKKKKKKEGEFFEEKKKKYVVSEERKE 112
Score = 28.3 bits (64), Expect = 4.4
Identities = 12/24 (50%), Positives = 19/24 (79%)
Query: 8 KKKKKKKKKEEEEKKQKKQKKKKK 31
K+KKKKKKK++E + +++KKK
Sbjct: 82 KRKKKKKKKKKEGEFFEEKKKKYV 105
Score = 27.9 bits (63), Expect = 5.7
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKK 25
+E E E+KKKK EE ++ QK
Sbjct: 92 KEGEFFEEKKKKYVVSEERKEDQKA 116
Score = 27.9 bits (63), Expect = 6.1
Identities = 13/25 (52%), Positives = 20/25 (80%)
Query: 9 KKKKKKKKEEEEKKQKKQKKKKKKV 33
K+KKKKKK+++E + ++KKKK V
Sbjct: 82 KRKKKKKKKKKEGEFFEEKKKKYVV 106
>gnl|CDD|233352 TIGR01310, L7, 60S ribosomal protein L7, eukaryotic. This model
describes the eukaryotic 60S (cytosolic) ribosomal
protein L7 and paralogs that may or may not also be L7.
Human, Drosophila, and Arabidopsis all have both a
typical L7 and an L7-related paralog. This family is
designated subfamily rather than equivalog to reflect
these uncharacterized paralogs. Members of this family
average ~ 250 residues in length, somewhat longer than
the archaeal L30P/L7E homolog (~ 155 residues) and much
longer than the related bacterial/organellar form (~ 60
residues).
Length = 235
Score = 30.8 bits (70), Expect = 0.84
Identities = 14/36 (38%), Positives = 18/36 (50%)
Query: 7 EKKKKKKKKKEEEEKKQKKQKKKKKKVNKVKPVHII 42
E KK+K ++E + KQ K KKK NK K
Sbjct: 1 ELLLKKRKARQELAVQVAKQAKAKKKANKKKRKIYF 36
>gnl|CDD|221654 pfam12589, WBS_methylT, Methyltransferase involved in
Williams-Beuren syndrome. This domain family is found
in eukaryotes, and is typically between 72 and 83 amino
acids in length. The family is found in association
with pfam08241. This family is made up of
S-adenosylmethionine-dependent methyltransferases. The
proteins are deleted in Williams-Beuren syndrome (WBS),
a complex developmental disorder with multisystemic
manifestations including supravalvular aortic stenosis
(SVAS) and a specific cognitive phenotype.
Length = 85
Score = 29.2 bits (66), Expect = 0.87
Identities = 12/32 (37%), Positives = 20/32 (62%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKK 32
EE++E K ++ + +K+KK+KK KKK
Sbjct: 21 EEDDEQIDASKVRRISQRNRRKKKKKKKLKKK 52
Score = 27.3 bits (61), Expect = 3.9
Identities = 11/35 (31%), Positives = 23/35 (65%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNK 35
EE++++ K ++ + +++KK+KKK KK +K
Sbjct: 20 GEEDDEQIDASKVRRISQRNRRKKKKKKKLKKKSK 54
Score = 26.5 bits (59), Expect = 7.4
Identities = 13/35 (37%), Positives = 24/35 (68%), Gaps = 3/35 (8%)
Query: 7 EKKKKKKKKKEEEEKKQKKQKKK---KKKVNKVKP 38
++KKKKKKK +++ K+ +KK +++ +VKP
Sbjct: 39 NRRKKKKKKKLKKKSKEWILRKKEQMRRRGKEVKP 73
>gnl|CDD|240271 PTZ00108, PTZ00108, DNA topoisomerase 2-like protein; Provisional.
Length = 1388
Score = 31.6 bits (72), Expect = 0.87
Identities = 13/40 (32%), Positives = 22/40 (55%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNKVKPVH 40
EE+E ++++ K K K + K +K + KKK+K K
Sbjct: 1148 EEKEIAKEQRLKSKTKGKASKLRKPKLKKKEKKKKKSSAD 1187
>gnl|CDD|220271 pfam09507, CDC27, DNA polymerase subunit Cdc27. This protein forms
the C subunit of DNA polymerase delta. It carries the
essential residues for binding to the Pol1 subunit of
polymerase alpha, from residues 293-332, which are
characterized by the motif D--G--VT, referred to as the
DPIM motif. The first 160 residues of the protein form
the minimal domain for binding to the B subunit, Cdc1,
of polymerase delta, the final 10 C-terminal residues,
362-372, being the DNA sliding clamp, PCNA, binding
motif.
Length = 427
Score = 31.3 bits (71), Expect = 0.88
Identities = 14/35 (40%), Positives = 26/35 (74%), Gaps = 2/35 (5%)
Query: 1 EEEEEDEKKK--KKKKKKEEEEKKQKKQKKKKKKV 33
E+E+EDE K ++ +EE E+K+K+++K+ KK+
Sbjct: 267 EDEDEDEPKPSGERSDSEEETEEKEKEKRKRLKKM 301
Score = 29.0 bits (65), Expect = 4.6
Identities = 10/32 (31%), Positives = 20/32 (62%)
Query: 8 KKKKKKKKKEEEEKKQKKQKKKKKKVNKVKPV 39
KKK K+KKE++E + K++ ++ + + V
Sbjct: 222 FKKKTKEKKEKKEASESTVKEESEEESGKRDV 253
>gnl|CDD|219947 pfam08639, SLD3, DNA replication regulator SLD3. The SLD3 DNA
replication regulator is required for loading and
maintenance of Cdc45 on chromatin during DNA
replication.
Length = 437
Score = 31.3 bits (71), Expect = 0.94
Identities = 13/43 (30%), Positives = 26/43 (60%)
Query: 4 EEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNKVKPVHIIFYRD 46
E++ KKK K+ + + K++K++K+KK + PV + + D
Sbjct: 127 EKEYKKKLLKRSQNLDRSKRRKRRKRKKNKKQDLPVLLDLHLD 169
>gnl|CDD|240576 cd12932, RRP7_like, RRP7 domain ribosomal RNA-processing protein
7 (Rrp7p), ribosomal RNA-processing protein 7 homolog A
(Rrp7A), and similar proteins. This CD corresponds to
the RRP7 domain of Rrp7p and Rrp7A. Rrp7p is encoded by
YCL031C gene from Saccharomyces cerevisiae. It is an
essential yeast protein involved in pre-rRNA processing
and ribosome assembly, and is speculated to be required
for correct assembly of rpS27 into the pre-ribosomal
particle. Rrp7A, also termed gastric cancer antigen
Zg14, is the Rrp7p homolog mainly found in Metazoans.
The cellular function of Rrp7A remains unclear
currently. Both Rrp7p and Rrp7A harbor an N-terminal
RNA recognition motif (RRM), also termed RBD (RNA
binding domain) or RNP (ribonucleoprotein domain), and
a C-terminal RRP7 domain.
Length = 118
Score = 29.5 bits (67), Expect = 0.95
Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 17/56 (30%)
Query: 1 EEEEEDE-------KKKKKKK----KKEEEEKKQKKQKKKKKKVNKVKPVHIIFYR 45
E DE + +K K + E + K+K++KKKKKK + FYR
Sbjct: 44 ARNEPDEDGFVTVTRGGRKGKTAREEAVEAKAKEKEKKKKKKKELED------FYR 93
>gnl|CDD|149515 pfam08492, SRP72, SRP72 RNA-binding domain. This region has been
identified as the binding site of the SRP72 protein to
SRP RNA.
Length = 57
Score = 28.2 bits (63), Expect = 0.99
Identities = 15/28 (53%), Positives = 19/28 (67%)
Query: 5 EDEKKKKKKKKKEEEEKKQKKQKKKKKK 32
E +K KK KKK E+K+KK KKK+K
Sbjct: 1 EAKKPKKIAKKKPGTEQKKKKSAKKKRK 28
Score = 26.3 bits (58), Expect = 5.4
Identities = 13/24 (54%), Positives = 16/24 (66%)
Query: 9 KKKKKKKKEEEEKKQKKQKKKKKK 32
KK KKK E+KK+K KKK+K
Sbjct: 6 KKIAKKKPGTEQKKKKSAKKKRKP 29
>gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein
TolA; Provisional.
Length = 387
Score = 30.9 bits (70), Expect = 1.0
Identities = 8/32 (25%), Positives = 20/32 (62%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKK 32
+ E+E +++KK+ EE K+ ++K+ ++
Sbjct: 105 QLEKERLAAQEQKKQAEEAAKQAALKQKQAEE 136
Score = 30.2 bits (68), Expect = 1.7
Identities = 9/32 (28%), Positives = 19/32 (59%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKK 32
E+E K+ +K++ +E+KKQ ++ K+
Sbjct: 97 AAEQERLKQLEKERLAAQEQKKQAEEAAKQAA 128
Score = 30.2 bits (68), Expect = 1.9
Identities = 8/37 (21%), Positives = 22/37 (59%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNKVK 37
EE + ++ ++++ K+ E+++ Q++KK+ K
Sbjct: 89 AEELQQKQAAEQERLKQLEKERLAAQEQKKQAEEAAK 125
Score = 29.8 bits (67), Expect = 2.3
Identities = 9/31 (29%), Positives = 12/31 (38%)
Query: 2 EEEEDEKKKKKKKKKEEEEKKQKKQKKKKKK 32
E E +K + KKK E K K +
Sbjct: 204 EAEAKKKAAAEAKKKAAAEAKAAAAKAAAEA 234
Score = 29.4 bits (66), Expect = 3.2
Identities = 7/32 (21%), Positives = 12/32 (37%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKK 32
E +++ + K K E K +K K
Sbjct: 214 EAKKKAAAEAKAAAAKAAAEAKAAAEKAAAAK 245
Score = 29.4 bits (66), Expect = 3.8
Identities = 12/32 (37%), Positives = 15/32 (46%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKK 32
E E +K + KKK E E K + KKK
Sbjct: 171 AEAEAAKKAAAEAKKKAEAEAAAKAAAEAKKK 202
Score = 29.4 bits (66), Expect = 3.8
Identities = 12/40 (30%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
Query: 1 EEEEEDEKKK---KKKKKKEEEEKKQKKQKKKKKKVNKVK 37
E ++ EK++ +++KK+ EE KQ K+K+ + K
Sbjct: 101 ERLKQLEKERLAAQEQKKQAEEAAKQAALKQKQAEEAAAK 140
Score = 29.0 bits (65), Expect = 4.1
Identities = 9/31 (29%), Positives = 15/31 (48%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKK 31
++ EE K+ K+K+ EE + K K
Sbjct: 118 KQAEEAAKQAALKQKQAEEAAAKAAAAAKAK 148
Score = 28.6 bits (64), Expect = 5.8
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 2 EEEEDEKKKKKKKKKEEEEKKQKKQKKKKKK 32
E E K + KKK E E K+K + KKK
Sbjct: 188 EAEAAAKAAAEAKKKAEAEAKKKAAAEAKKK 218
Score = 28.2 bits (63), Expect = 8.8
Identities = 9/31 (29%), Positives = 15/31 (48%)
Query: 2 EEEEDEKKKKKKKKKEEEEKKQKKQKKKKKK 32
++ E+ K+ K+K+ EE K K K
Sbjct: 118 KQAEEAAKQAALKQKQAEEAAAKAAAAAKAK 148
>gnl|CDD|129022 smart00786, SHR3_chaperone, ER membrane protein SH3. This family
of proteins are membrane localised chaperones that are
required for correct plasma membrane localisation of
amino acid permeases (AAPs). Shr3 prevents AAPs proteins
from aggregating and assists in their correct folding.
In the absence of Shr3, AAPs are retained in the ER.
Length = 196
Score = 30.4 bits (69), Expect = 1.1
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKK 31
EE +E+K+ ++ QK + KKKK
Sbjct: 166 EEFAAEERKEALAAAAKKSATPQKVETKKKK 196
>gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain. This domain is
found at the N terminus of SMC proteins. The SMC
(structural maintenance of chromosomes) superfamily
proteins have ATP-binding domains at the N- and
C-termini, and two extended coiled-coil domains
separated by a hinge in the middle. The eukaryotic SMC
proteins form two kind of heterodimers: the SMC1/SMC3
and the SMC2/SMC4 types. These heterodimers constitute
an essential part of higher order complexes, which are
involved in chromatin and DNA dynamics. This family also
includes the RecF and RecN proteins that are involved in
DNA metabolism and recombination.
Length = 1162
Score = 31.1 bits (70), Expect = 1.1
Identities = 10/34 (29%), Positives = 20/34 (58%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVN 34
EE + ++ K K++ K+ E Q K+K + ++ N
Sbjct: 193 LEELKLQELKLKEQAKKALEYYQLKEKLELEEEN 226
Score = 31.1 bits (70), Expect = 1.2
Identities = 9/37 (24%), Positives = 19/37 (51%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNKVK 37
EE + E K K++ KK E + K++ + +++
Sbjct: 194 EELKLQELKLKEQAKKALEYYQLKEKLELEEENLLYL 230
Score = 31.1 bits (70), Expect = 1.2
Identities = 14/43 (32%), Positives = 25/43 (58%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNKVKPVHIIF 43
EE+EE K + KK++ EEEKK+ ++ ++ + K +F
Sbjct: 985 EEKEERYNKDELKKERLEEEKKELLREIIEETCQRFKEFLELF 1027
Score = 29.9 bits (67), Expect = 3.1
Identities = 8/35 (22%), Positives = 23/35 (65%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNK 35
+ + E+EK++K K ++EE +++ K++ + + +
Sbjct: 786 KLKVEEEKEEKLKAQEEELRALEEELKEEAELLEE 820
Score = 29.6 bits (66), Expect = 3.6
Identities = 7/37 (18%), Positives = 20/37 (54%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNKVK 37
+ E+ K ++ K K++ ++ + Q K+K ++ +
Sbjct: 190 IIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEN 226
Score = 29.6 bits (66), Expect = 3.9
Identities = 11/35 (31%), Positives = 26/35 (74%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNK 35
+E E++ KK +K+ KKE+EE ++ +++ K+ ++ +
Sbjct: 318 KESEKELKKLEKELKKEKEEIEELEKELKELEIKR 352
Score = 28.8 bits (64), Expect = 6.7
Identities = 10/35 (28%), Positives = 22/35 (62%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNK 35
E+EE+ + K+ KEEE++K+ ++++ K +
Sbjct: 261 LEKEEEILAQVLKENKEEEKEKKLQEEELKLLAKE 295
>gnl|CDD|218797 pfam05890, Ebp2, Eukaryotic rRNA processing protein EBP2. This
family consists of several Eukaryotic rRNA processing
protein EBP2 sequences. Ebp2p is required for the
maturation of 25S rRNA and 60S subunit assembly. Ebp2p
may be one of the target proteins of Rrs1p for executing
the signal to regulate ribosome biogenesis. This family
also plays a role in chromosome segregation.
Length = 270
Score = 30.8 bits (70), Expect = 1.1
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 9 KKKKKKKKEEEEKKQKKQKKKKKKVNKVK 37
+ KK EE +KQ++ KK K+V K
Sbjct: 126 AEAAAKKASEEARKQRELKKFGKQVQVEK 154
Score = 29.6 bits (67), Expect = 2.7
Identities = 14/39 (35%), Positives = 25/39 (64%), Gaps = 2/39 (5%)
Query: 1 EEEEEDEKKKKKKK--KKEEEEKKQKKQKKKKKKVNKVK 37
+ EE K+++ KK K+ + EK Q++ K+KK + K+K
Sbjct: 132 KASEEARKQRELKKFGKQVQVEKLQERAKEKKDMLEKIK 170
Score = 28.5 bits (64), Expect = 5.4
Identities = 7/31 (22%), Positives = 14/31 (45%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKK 31
++ + KKK +K + + K+K K
Sbjct: 189 LVDDAAKGGSKKKGRKGGAARGKPNAKRKAK 219
Score = 28.5 bits (64), Expect = 5.7
Identities = 9/34 (26%), Positives = 15/34 (44%)
Query: 2 EEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNK 35
++ K KKK ++ + K K+K K K
Sbjct: 189 LVDDAAKGGSKKKGRKGGAARGKPNAKRKAKDAK 222
>gnl|CDD|203462 pfam06476, DUF1090, Protein of unknown function (DUF1090). This
family consists of several bacterial proteins of unknown
function and is known as YqjC in E. coli.
Length = 115
Score = 29.5 bits (67), Expect = 1.2
Identities = 9/32 (28%), Positives = 19/32 (59%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKK 32
E E++ K+ + K ++ EKKQ+K + + +
Sbjct: 80 AEREQELKEAQAKGDADKIEKKQRKLAEAQAE 111
Score = 26.8 bits (60), Expect = 7.8
Identities = 8/35 (22%), Positives = 19/35 (54%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNK 35
E + ++K+++ + E+E K+ + K K+ K
Sbjct: 66 AERQAKVEEKEQEVAEREQELKEAQAKGDADKIEK 100
>gnl|CDD|217502 pfam03343, SART-1, SART-1 family. SART-1 is a protein involved in
cell cycle arrest and pre-mRNA splicing. It has been
shown to be a component of U4/U6 x U5 tri-snRNP complex
in human, Schizosaccharomyces pombe and Saccharomyces
cerevisiae. SART-1 is a known tumour antigen in a range
of cancers recognised by T cells.
Length = 603
Score = 30.9 bits (70), Expect = 1.2
Identities = 13/42 (30%), Positives = 24/42 (57%), Gaps = 5/42 (11%)
Query: 1 EEEEED-----EKKKKKKKKKEEEEKKQKKQKKKKKKVNKVK 37
+++++D +K KK++KKKE E KK +K+K+
Sbjct: 85 DDDDDDTKAWLKKSKKRQKKKEAERKKALLLDEKEKERAAEY 126
Score = 29.3 bits (66), Expect = 3.8
Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 6/31 (19%)
Query: 2 EEEEDEKKKKKKKKKEEEEKKQKKQKKKKKK 32
+ E K KK KK KK+KK+K++K
Sbjct: 268 DVSEMVKFKKPKK------KKKKKKKRRKDL 292
Score = 29.0 bits (65), Expect = 4.6
Identities = 9/37 (24%), Positives = 23/37 (62%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNKVK 37
+E D + KK++EE + ++K+++ ++K+ K +
Sbjct: 30 TKESRDAAAYENWKKRQEEAEAKRKREELREKIAKAR 66
Score = 28.6 bits (64), Expect = 6.9
Identities = 14/55 (25%), Positives = 21/55 (38%), Gaps = 18/55 (32%)
Query: 1 EEEEEDEKKKKKKKKKE------------------EEEKKQKKQKKKKKKVNKVK 37
+E E+ ++ KKK K E + K+ KKKKK K +
Sbjct: 234 DEAEKKRQEVKKKLKINNVSLDDDSTETPASDYYDVSEMVKFKKPKKKKKKKKKR 288
>gnl|CDD|200340 TIGR03927, T7SS_EssA_Firm, type VII secretion protein EssA.
Members of this family are associated with type VII
secretion of WXG100 family targets in the Firmicutes,
but not in the Actinobacteria. This highly divergent
protein family consists largely of a central region of
highly polar low-complexity sequence containing
occasional LF motifs in weak repeats about 17 residues
in length, flanked by hydrophobic N- and C-terminal
regions [Protein fate, Protein and peptide secretion
and trafficking].
Length = 150
Score = 30.0 bits (68), Expect = 1.2
Identities = 8/35 (22%), Positives = 22/35 (62%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNK 35
EE E D++ +++K+ +K K++ ++++ N+
Sbjct: 45 EETELDKELFTPEEQKKITFQKHKEKPEQEELKNQ 79
Score = 29.7 bits (67), Expect = 1.4
Identities = 8/38 (21%), Positives = 21/38 (55%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNKVKP 38
+ +E+ + K+ EE++K ++ K+K + ++K
Sbjct: 41 DYLQEETELDKELFTPEEQKKITFQKHKEKPEQEELKN 78
>gnl|CDD|179712 PRK04019, rplP0, acidic ribosomal protein P0; Validated.
Length = 330
Score = 30.6 bits (70), Expect = 1.2
Identities = 8/20 (40%), Positives = 17/20 (85%)
Query: 1 EEEEEDEKKKKKKKKKEEEE 20
EEEE+E++++++++ EEE
Sbjct: 301 AEEEEEEEEEEEEEEPSEEE 320
Score = 29.4 bits (67), Expect = 3.1
Identities = 6/20 (30%), Positives = 16/20 (80%)
Query: 1 EEEEEDEKKKKKKKKKEEEE 20
EEE+E+++++++++ EE
Sbjct: 300 AAEEEEEEEEEEEEEEPSEE 319
>gnl|CDD|221012 pfam11169, DUF2956, Protein of unknown function (DUF2956). This
family of proteins with unknown function appears to be
restricted to Gammaproteobacteria.
Length = 103
Score = 29.2 bits (66), Expect = 1.2
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 10 KKKKKKKEEEEKKQKKQKKKKKK 32
KK++K K E K +KQ+ K K+
Sbjct: 40 KKQQKAKAREADKARKQQLKAKQ 62
Score = 28.4 bits (64), Expect = 2.1
Identities = 11/26 (42%), Positives = 18/26 (69%)
Query: 7 EKKKKKKKKKEEEEKKQKKQKKKKKK 32
E KK++K K E +K +K+Q K K++
Sbjct: 38 EYKKQQKAKAREADKARKQQLKAKQR 63
>gnl|CDD|221857 pfam12923, RRP7, Ribosomal RNA-processing protein 7 (RRP7). RRP7
is an essential protein in yeast that is involved in
pre-rRNA processing and ribosome assembly. It is
speculated to be required for correct assembly of rpS27
into the pre-ribosomal particle.
Length = 131
Score = 29.5 bits (67), Expect = 1.3
Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 15/52 (28%)
Query: 1 EEEEEDEKKKKKKKKKEEE--------EKKQKKQ---KKK----KKKVNKVK 37
EE K+KKKKKKKE E EKK+++ +KK KK++ ++K
Sbjct: 72 AEERRKLKEKKKKKKKELENFYRFQIREKKKEELAELRKKFEEDKKRIEQLK 123
Score = 29.1 bits (66), Expect = 1.9
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 17/55 (30%)
Query: 2 EEEED-----EKKKKKKK------KKEEEEKKQKKQKKKKKKVNKVKPVHIIFYR 45
E +ED + +K+K K EE +K K++KKKKKK + FYR
Sbjct: 46 EPDEDGWTTVTRGGRKRKAGASRNKAAEERRKLKEKKKKKKKELEN------FYR 94
>gnl|CDD|218538 pfam05285, SDA1, SDA1. This family consists of several SDA1
protein homologues. SDA1 is a Saccharomyces cerevisiae
protein which is involved in the control of the actin
cytoskeleton. The protein is essential for cell
viability and is localised in the nucleus.
Length = 317
Score = 30.8 bits (70), Expect = 1.3
Identities = 11/46 (23%), Positives = 25/46 (54%), Gaps = 10/46 (21%)
Query: 1 EEEEEDEKKKKKKKK----------KEEEEKKQKKQKKKKKKVNKV 36
E+EE++ + KK K EEE ++++ + +K+K +++
Sbjct: 132 SEDEEEKDEAAKKAKEDSDEELSEEDEEEAAEEEEAEAEKEKASEL 177
>gnl|CDD|234750 PRK00409, PRK00409, recombination and DNA strand exchange inhibitor
protein; Reviewed.
Length = 782
Score = 31.0 bits (71), Expect = 1.3
Identities = 15/39 (38%), Positives = 26/39 (66%), Gaps = 3/39 (7%)
Query: 2 EEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVN---KVK 37
E E +K+ K E++EKK+KKQK+K++++ +VK
Sbjct: 606 AHELIEARKRLNKANEKKEKKKKKQKEKQEELKVGDEVK 644
Score = 28.6 bits (65), Expect = 7.1
Identities = 12/32 (37%), Positives = 22/32 (68%)
Query: 7 EKKKKKKKKKEEEEKKQKKQKKKKKKVNKVKP 38
E + +K+ + EKK+KK+KK+K+K ++K
Sbjct: 608 ELIEARKRLNKANEKKEKKKKKQKEKQEELKV 639
>gnl|CDD|197876 smart00792, Agouti, Agouti protein. The agouti protein regulates
pigmentation in the mouse hair follicle producing a
black hair with a subapical yellow band. A highly
homologous protein agouti signal protein (ASIP) is
present in humans and is expressed at highest levels in
adipose tissue where it may play a role in energy
homeostasis and possibly human pigmentation.
Length = 124
Score = 29.5 bits (66), Expect = 1.3
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 8 KKKKKKKKKEEEEKKQKKQKKKKKK 32
KK KK +E E+K +K++KK
Sbjct: 52 KKPKKISAEEAEKKLLQKKEKKALT 76
>gnl|CDD|240578 cd12951, RRP7_Rrp7A, RRP7 domain ribosomal RNA-processing protein
7 homolog A (Rrp7A) and similar proteins. The family
corresponds to the RRP7 domain of Rrp7A, also termed
gastric cancer antigen Zg14, and similar proteins which
are yeast ribosomal RNA-processing protein 7 (Rrp7p)
homologs mainly found in Metazoans. The cellular
function of Rrp7A remains unclear currently. Rrp7A
harbors an N-terminal RNA recognition motif (RRM), also
termed RBD (RNA binding domain) or RNP
(ribonucleoprotein domain), and a C-terminal RRP7
domain.
Length = 129
Score = 29.6 bits (67), Expect = 1.3
Identities = 14/50 (28%), Positives = 22/50 (44%), Gaps = 5/50 (10%)
Query: 1 EEEEEDEK-----KKKKKKKKEEEEKKQKKQKKKKKKVNKVKPVHIIFYR 45
+E E DE KK ++ K ++ + +K+K K K FYR
Sbjct: 43 KEAEPDEDGWVTVTKKGRRPKTARKESVAAKAAEKEKKKKKKKELKNFYR 92
Score = 27.2 bits (61), Expect = 7.9
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 15/51 (29%)
Query: 2 EEEEDEKKKKKKKKKEEE--------EKKQKK----QKK---KKKKVNKVK 37
+ EK+KKKKKKKE + E K+ + +KK KK++ +K
Sbjct: 71 AAKAAEKEKKKKKKKELKNFYRFQIRESKRNELAELRKKFEEDKKRIALLK 121
>gnl|CDD|239572 cd03490, Topoisomer_IB_N_1, Topoisomer_IB_N_1: A subgroup of the
N-terminal DNA binding fragment found in eukaryotic DNA
topoisomerase (topo) IB. Topo IB proteins include the
monomeric yeast and human topo I and heterodimeric topo
I from Leishmania donvanni. Topo I enzymes are divided
into: topo type IA (bacterial) and type IB
(eukaryotic). Topo I relaxes superhelical tension in
duplex DNA by creating a single-strand nick, the broken
strand can then rotate around the unbroken strand to
remove DNA supercoils and, the nick is religated,
liberating topo I. These enzymes regulate the
topological changes that accompany DNA replication,
transcription and other nuclear processes. Human topo I
is the target of a diverse set of anticancer drugs
including camptothecins (CPTs). CPTs bind to the topo
I-DNA complex and inhibit religation of the
single-strand nick, resulting in the accumulation of
topo I-DNA adducts. In addition to differences in
structure and some biochemical properties,
Trypanosomatid parasite topos I differ from human topo I
in their sensitivity to CPTs and other classical topo I
inhibitors. Trypanosomatid topos I have putative roles
in organizing the kinetoplast DNA network unique to
these parasites. This family may represent more than
one structural domain.
Length = 217
Score = 30.3 bits (68), Expect = 1.3
Identities = 14/30 (46%), Positives = 22/30 (73%)
Query: 5 EDEKKKKKKKKKEEEEKKQKKQKKKKKKVN 34
E+EK+KKK KEE+E K+K++ K++ N
Sbjct: 94 EEEKEKKKNLNKEEKEAKKKERAKREYPFN 123
>gnl|CDD|148630 pfam07133, Merozoite_SPAM, Merozoite surface protein (SPAM). This
family consists of several Plasmodium falciparum SPAM
(secreted polymorphic antigen associated with
merozoites) proteins. Variation among SPAM alleles is
the result of deletions and amino acid substitutions in
non-repetitive sequences within and flanking the alanine
heptad-repeat domain. Heptad repeats in which the a and
d position contain hydrophobic residues generate
amphipathic alpha-helices which give rise to helical
bundles or coiled-coil structures in proteins. SPAM is
an example of a P. falciparum antigen in which a
repetitive sequence has features characteristic of a
well-defined structural element.
Length = 164
Score = 29.8 bits (67), Expect = 1.3
Identities = 8/35 (22%), Positives = 17/35 (48%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNK 35
E+EEE+E+ ++ ++ EKK + +
Sbjct: 76 EDEEEEEEDEEDNVDLKDIEKKNINDIFNSTQDDN 110
>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger. [Transport and
binding proteins, Cations and iron carrying compounds].
Length = 1096
Score = 31.1 bits (70), Expect = 1.3
Identities = 10/27 (37%), Positives = 26/27 (96%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQK 27
EEEEE+E+++++++++EEEE++++ ++
Sbjct: 866 EEEEEEEEEEEEEEEEEEEEEEEENEE 892
Score = 30.3 bits (68), Expect = 2.1
Identities = 10/28 (35%), Positives = 27/28 (96%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKK 28
EEEEE+E+++++++++EEEE+++++ ++
Sbjct: 865 EEEEEEEEEEEEEEEEEEEEEEEEENEE 892
Score = 29.6 bits (66), Expect = 3.2
Identities = 10/29 (34%), Positives = 28/29 (96%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKK 29
EEEEE+E+++++++++EEEE++++++ ++
Sbjct: 864 EEEEEEEEEEEEEEEEEEEEEEEEEENEE 892
Score = 29.6 bits (66), Expect = 3.3
Identities = 9/29 (31%), Positives = 28/29 (96%)
Query: 2 EEEEDEKKKKKKKKKEEEEKKQKKQKKKK 30
EEEE+E+++++++++EEEE+++++++ ++
Sbjct: 864 EEEEEEEEEEEEEEEEEEEEEEEEEENEE 892
>gnl|CDD|241121 cd12677, RRM4_Nop4p, RNA recognition motif 4 in yeast nucleolar
protein 4 (Nop4p) and similar proteins. This subgroup
corresponds to the RRM4 of Nop4p (also known as
Nop77p), encoded by YPL043W from Saccharomyces
cerevisiae. It is an essential nucleolar protein
involved in processing and maturation of 27S pre-rRNA
and biogenesis of 60S ribosomal subunits. Nop4p has
four RNA recognition motifs (RRMs), also termed RBDs
(RNA binding domains) or RNPs (ribonucleoprotein
domains). .
Length = 156
Score = 29.9 bits (67), Expect = 1.3
Identities = 15/54 (27%), Positives = 23/54 (42%), Gaps = 6/54 (11%)
Query: 5 EDEKKKKKKKKKEEEEKKQKK------QKKKKKKVNKVKPVHIIFYRDGVSEGQ 52
+D KK + +EEE + K Q KK K VK + + G + G+
Sbjct: 34 DDVKKGLRAPLSKEEENRDKGHRYKEAQLKKGKSGGVVKQAKVETEKAGSTAGR 87
>gnl|CDD|218312 pfam04889, Cwf_Cwc_15, Cwf15/Cwc15 cell cycle control protein.
This family represents Cwf15/Cwc15 (from
Schizosaccharomyces pombe and Saccharomyces cerevisiae
respectively) and their homologues. The function of
these proteins is unknown, but they form part of the
spliceosome and are thus thought to be involved in mRNA
splicing.
Length = 241
Score = 30.5 bits (69), Expect = 1.4
Identities = 13/39 (33%), Positives = 25/39 (64%), Gaps = 6/39 (15%)
Query: 1 EEEE---EDEKKKK---KKKKKEEEEKKQKKQKKKKKKV 33
E E EK KK ++K++EEEEK +++K +++++
Sbjct: 143 ETAALLRELEKIKKERAEEKEREEEEKAAEEEKAREEEI 181
>gnl|CDD|129262 TIGR00158, L9, ribosomal protein L9. Ribosomal protein L9
appears to be universal in, but restricted to,
eubacteria and chloroplast [Protein synthesis,
Ribosomal proteins: synthesis and modification].
Length = 148
Score = 29.7 bits (67), Expect = 1.4
Identities = 9/35 (25%), Positives = 18/35 (51%)
Query: 7 EKKKKKKKKKEEEEKKQKKQKKKKKKVNKVKPVHI 41
E + ++KK EE+ K + K+V ++ + I
Sbjct: 45 EFFEARRKKLEEKLAANKAAAARLKEVLELGTLTI 79
>gnl|CDD|215525 PLN02972, PLN02972, Histidyl-tRNA synthetase.
Length = 763
Score = 30.6 bits (69), Expect = 1.4
Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
Query: 4 EEDEKKKKKKKKKEEEE---KKQKKQKKKKKKVNKVKPVHIIFYRDGVSEG 51
E E +K + + E E K+ K+ KKKK + K + +D V+ G
Sbjct: 228 EGGELIEKPQAEAENEAGKSDKKDKKSKKKKVLGKGTSAVLQLIKDRVTNG 278
>gnl|CDD|219783 pfam08297, U3_snoRNA_assoc, U3 snoRNA associated. This family of
proteins is associated with U3 snoRNA. U3 snoRNA is
required for nucleolar processing of pre-18S ribosomal
RNA.
Length = 87
Score = 28.5 bits (64), Expect = 1.5
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKK 29
EEE ++KKK K + ++ +K+ K KK
Sbjct: 24 YEEELKKQKKKNKLRFLKKLEKRPKDVKK 52
Score = 26.6 bits (59), Expect = 6.7
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKK 31
E EE+ KK+KKK K +K +K+ K KK
Sbjct: 22 ESYEEELKKQKKKNKLRFLKKLEKRPKDVKK 52
>gnl|CDD|241486 cd13332, FERM_C_JAK1, Janus kinase 1 FERM domain C-lobe. JAK1 is a
tyrosine kinase protein essential in signaling type I
and type II cytokines. It interacts with the gamma chain
of type I cytokine receptors to elicit signals from the
IL-2 receptor family, the IL-4 receptor family, the
gp130 receptor family, ciliary neurotrophic factor
receptor (CNTF-R), neurotrophin-1 receptor (NNT-1R) and
Leptin-R). It also is involved in transducing a signal
by type I (IFN-alpha/beta) and type II (IFN-gamma)
interferons, and members of the IL-10 family via type II
cytokine receptors. JAK (also called Just Another
Kinase) is a family of intracellular, non-receptor
tyrosine kinases that transduce cytokine-mediated
signals via the JAK-STAT pathway. The JAK family in
mammals consists of 4 members: JAK1, JAK2, JAK3 and
TYK2. JAKs are composed of seven JAK homology (JH)
domains (JH1-JH7) . The C-terminal JH1 domain is the
main catalytic domain, followed by JH2, which is often
referred to as a pseudokinase domain, followed by
JH3-JH4 which is homologous to the SH2 domain, and
lastly JH5-JH7 which is a FERM domain. Named after
Janus, the two-faced Roman god of doorways, JAKs possess
two near-identical phosphate-transferring domains; one
which displays the kinase activity (JH1), while the
other negatively regulates the kinase activity of the
first (JH2). The FERM domain has a cloverleaf tripart
structure (FERM_N, FERM_M, FERM_C/N, alpha-, and
C-lobe/A-lobe,A-lobe, B-lobe, C-lobe/F1, F2, F3). The
C-lobe/F3 within the FERM domain is part of the PH
domain family. The FERM domain is found in the
cytoskeletal-associated proteins such as ezrin, moesin,
radixin, 4.1R, and merlin. These proteins provide a link
between the membrane and cytoskeleton and are involved
in signal transduction pathways. The FERM domain is also
found in protein tyrosine phosphatases (PTPs) , the
tyrosine kinases FAK and JAK, in addition to other
proteins involved in signaling. This domain is
structurally similar to the PH and PTB domains and
consequently is capable of binding to both peptides and
phospholipids at different sites.
Length = 198
Score = 30.2 bits (68), Expect = 1.5
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 7 EKKKKKKKKKEEEEKKQKKQKKKKK 31
EKKKK K KK + + K+ + KKK +
Sbjct: 90 EKKKKGKSKKNKLKGKKDEDKKKAR 114
Score = 28.3 bits (63), Expect = 6.1
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 9 KKKKKKKKEEEEKKQKKQKKKKKK 32
KKKK K K+ + K +K + KKK +
Sbjct: 91 KKKKGKSKKNKLKGKKDEDKKKAR 114
>gnl|CDD|221756 pfam12757, DUF3812, Protein of unknown function (DUF3812). This is
a family of fungal proteins whose function is not known.
Length = 126
Score = 29.2 bits (66), Expect = 1.5
Identities = 8/26 (30%), Positives = 21/26 (80%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQ 26
EE++ DE++ K++ ++ +E +++KK+
Sbjct: 101 EEKKLDEEEAKRQHEEAKEREREKKK 126
>gnl|CDD|240246 PTZ00053, PTZ00053, methionine aminopeptidase 2; Provisional.
Length = 470
Score = 30.5 bits (69), Expect = 1.6
Identities = 11/35 (31%), Positives = 21/35 (60%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNK 35
E E + K++K++ +++ +KK KK KK V+
Sbjct: 1 AMNENGENEVKQQKQQNKQKGTKKKNKKSKKDVDD 35
Score = 30.5 bits (69), Expect = 1.7
Identities = 11/47 (23%), Positives = 24/47 (51%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNKVKPVHIIFYRDG 47
+E E+++ KKKKKK++++KK+ + + ++D
Sbjct: 47 NQEAENKQNNKKKKKKKKKKKKKNLGEAYDLAYDLPVVWSSAAFQDN 93
Score = 30.5 bits (69), Expect = 1.9
Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 15/52 (28%)
Query: 1 EEEEEDEKKKKKKKKKEEE---------------EKKQKKQKKKKKKVNKVK 37
+++ +KK KK KK ++ E KQ +KKKKKK K K
Sbjct: 17 NKQKGTKKKNKKSKKDVDDDDAFLAELISENQEAENKQNNKKKKKKKKKKKK 68
>gnl|CDD|220357 pfam09716, ETRAMP, Malarial early transcribed membrane protein
(ETRAMP). These sequences represent a family of
proteins from the malaria parasite Plasmodium
falciparum, several of which have been shown to be
expressed specifically in the ring stage as well as the
rodent parasite Plasmodium yoelii. A homologue from
Plasmodium chabaudi was localized to the
parasitophorous vacuole membrane. Members have an
initial hydrophobic, Phe/Tyr-rich, stretch long enough
to span the membrane, a highly charged region rich in
Lys, a second putative transmembrane region and a
second highly charged, low complexity sequence region.
Some members have up to 100 residues of additional
C-terminal sequence. These genes have been shown to be
found in the sub-telomeric regions of both Plasmodium
falciparum and P. yoelii chromosomes.
Length = 82
Score = 28.4 bits (64), Expect = 1.6
Identities = 13/25 (52%), Positives = 18/25 (72%)
Query: 7 EKKKKKKKKKEEEEKKQKKQKKKKK 31
KKKK KK K+ ++ +KK+K KKK
Sbjct: 29 AKKKKLKKLKKIDDDLEKKKKNKKK 53
>gnl|CDD|234582 PRK00028, infC, translation initiation factor IF-3; Reviewed.
Length = 177
Score = 29.7 bits (68), Expect = 1.6
Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 4/29 (13%)
Query: 14 KKKEEEEKKQKKQKKKKKKVN----KVKP 38
K K E++KKQK+ KKK+K + K +P
Sbjct: 70 KFKYEQKKKQKEAKKKQKVIEVKEIKFRP 98
>gnl|CDD|217479 pfam03297, Ribosomal_S25, S25 ribosomal protein.
Length = 105
Score = 28.9 bits (65), Expect = 1.7
Identities = 13/31 (41%), Positives = 15/31 (48%)
Query: 8 KKKKKKKKKEEEEKKQKKQKKKKKKVNKVKP 38
KK++KK K K KKKK KVK
Sbjct: 4 KKQQKKAAKAAAASAGGKAKKKKWSKGKVKD 34
>gnl|CDD|218435 pfam05104, Rib_recp_KP_reg, Ribosome receptor lysine/proline rich
region. This highly conserved region is found towards
the C-terminus of the transmembrane domain. The
function is unclear.
Length = 151
Score = 29.6 bits (66), Expect = 1.7
Identities = 16/40 (40%), Positives = 25/40 (62%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNKVKPVH 40
+E + + +K KKKKE+ +K+ K KKK++K N P H
Sbjct: 15 KESGKTQSQKSDKKKKEKVSEKKGKSKKKEEKPNGKIPEH 54
>gnl|CDD|239570 cd03488, Topoisomer_IB_N_htopoI_like, Topoisomer_IB_N_htopoI_like :
N-terminal DNA binding fragment found in eukaryotic DNA
topoisomerase (topo) IB proteins similar to the
monomeric yeast and human topo I. Topo I enzymes are
divided into: topo type IA (bacterial) and type IB
(eukaryotic). Topo I relaxes superhelical tension in
duplex DNA by creating a single-strand nick, the broken
strand can then rotate around the unbroken strand to
remove DNA supercoils and, the nick is religated,
liberating topo I. These enzymes regulate the
topological changes that accompany DNA replication,
transcription and other nuclear processes. Human topo I
is the target of a diverse set of anticancer drugs
including camptothecins (CPTs). CPTs bind to the topo
I-DNA complex and inhibit religation of the
single-strand nick, resulting in the accumulation of
topo I-DNA adducts. This family may represent more than
one structural domain.
Length = 215
Score = 30.0 bits (68), Expect = 1.7
Identities = 10/24 (41%), Positives = 17/24 (70%)
Query: 7 EKKKKKKKKKEEEEKKQKKQKKKK 30
+ +K++KK +EEKK K +K+K
Sbjct: 95 KAQKEEKKAMSKEEKKAIKAEKEK 118
>gnl|CDD|99734 cd00609, AAT_like, Aspartate aminotransferase family. This family
belongs to pyridoxal phosphate (PLP)-dependent aspartate
aminotransferase superfamily (fold I). Pyridoxal
phosphate combines with an alpha-amino acid to form a
compound called a Schiff base or aldimine intermediate,
which depending on the reaction, is the substrate in
four kinds of reactions (1) transamination (movement of
amino groups), (2) racemization (redistribution of
enantiomers), (3) decarboxylation (removing COOH
groups), and (4) various side-chain reactions depending
on the enzyme involved. Pyridoxal phosphate (PLP)
dependent enzymes were previously classified into alpha,
beta and gamma classes, based on the chemical
characteristics (carbon atom involved) of the reaction
they catalyzed. The availability of several structures
allowed a comprehensive analysis of the evolutionary
classification of PLP dependent enzymes, and it was
found that the functional classification did not always
agree with the evolutionary history of these enzymes.
The major groups in this CD corresponds to Aspartate
aminotransferase a, b and c, Tyrosine, Alanine,
Aromatic-amino-acid, Glutamine phenylpyruvate,
1-Aminocyclopropane-1-carboxylate synthase,
Histidinol-phosphate, gene products of malY and cobC,
Valine-pyruvate aminotransferase and Rhizopine
catabolism regulatory protein.
Length = 350
Score = 30.4 bits (69), Expect = 1.7
Identities = 16/72 (22%), Positives = 21/72 (29%), Gaps = 10/72 (13%)
Query: 323 YYLCHLFSRCTRSVSYPAPTYYAHLAAFR--GRVYIK------NRHLDMNNLPRENQVHQ 374
L V P PTY + AA R G + L L + +
Sbjct: 73 SLLLRALLNPGDEVLVPDPTYPGYEAAARLAGAEVVPVPLDEEGGFLLDLELLEAAKTPK 132
Query: 375 ANAEFLT--NNP 384
+L NNP
Sbjct: 133 TKLLYLNNPNNP 144
>gnl|CDD|151656 pfam11214, Med2, Mediator complex subunit 2. This family of
mediator complex subunit 2 proteins is conserved in
fungi. Cyclin-dependent kinase CDK8 or Srb10 interacts
with and phosphorylates Med2. Post-translational
modifications of Mediator subunits are important for
regulation of gene expression.
Length = 99
Score = 28.6 bits (64), Expect = 1.7
Identities = 11/20 (55%), Positives = 19/20 (95%)
Query: 11 KKKKKKEEEEKKQKKQKKKK 30
+ KKK+EEEE+K+K++++KK
Sbjct: 80 ENKKKQEEEERKKKEEEEKK 99
Score = 27.4 bits (61), Expect = 4.4
Identities = 11/24 (45%), Positives = 19/24 (79%)
Query: 6 DEKKKKKKKKKEEEEKKQKKQKKK 29
D + KKK++EEE KK+++++KK
Sbjct: 76 DTLVENKKKQEEEERKKKEEEEKK 99
>gnl|CDD|233294 TIGR01159, DRP1, density-regulated protein DRP1. This protein
family shows weak but suggestive similarity to
translation initiation factor SUI1 and its prokaryotic
homologs.
Length = 173
Score = 29.5 bits (66), Expect = 1.7
Identities = 11/38 (28%), Positives = 19/38 (50%), Gaps = 5/38 (13%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQ-----KKKKKKV 33
E E + +++K +++ QK Q KKKKK+
Sbjct: 50 EAEAVTIGEAQEEKGEKDLLGIQKAQEAREGGKKKKKL 87
>gnl|CDD|224969 COG2058, RPP1A, Ribosomal protein L12E/L44/L45/RPP1/RPP2
[Translation, ribosomal structure and biogenesis].
Length = 109
Score = 28.9 bits (65), Expect = 1.8
Identities = 7/20 (35%), Positives = 14/20 (70%)
Query: 1 EEEEEDEKKKKKKKKKEEEE 20
E DE ++++K+++ EEE
Sbjct: 79 AAAEADEAEEEEKEEEAEEE 98
>gnl|CDD|214395 CHL00204, ycf1, Ycf1; Provisional.
Length = 1832
Score = 30.5 bits (69), Expect = 1.8
Identities = 15/23 (65%), Positives = 21/23 (91%)
Query: 3 EEEDEKKKKKKKKKEEEEKKQKK 25
EE+ +KKKKK+KKKEEE K+++K
Sbjct: 742 EEKTKKKKKKEKKKEEEYKREEK 764
Score = 30.5 bits (69), Expect = 2.2
Identities = 12/25 (48%), Positives = 21/25 (84%)
Query: 2 EEEEDEKKKKKKKKKEEEEKKQKKQ 26
EE+ +KKKK+KKK+EE ++++K +
Sbjct: 742 EEKTKKKKKKEKKKEEEYKREEKAR 766
Score = 30.1 bits (68), Expect = 2.3
Identities = 11/28 (39%), Positives = 23/28 (82%)
Query: 4 EEDEKKKKKKKKKEEEEKKQKKQKKKKK 31
+ E+K KKKKKKE++++++ K+++K +
Sbjct: 739 DSVEEKTKKKKKKEKKKEEEYKREEKAR 766
Score = 29.7 bits (67), Expect = 3.5
Identities = 14/28 (50%), Positives = 22/28 (78%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKK 28
+ EE KKKKKK+KK+EEE K++++ +
Sbjct: 739 DSVEEKTKKKKKKEKKKEEEYKREEKAR 766
Score = 29.3 bits (66), Expect = 5.0
Identities = 11/28 (39%), Positives = 23/28 (82%)
Query: 2 EEEEDEKKKKKKKKKEEEEKKQKKQKKK 29
+ E++ KKKKKK+K++EE+ ++++K +
Sbjct: 739 DSVEEKTKKKKKKEKKKEEEYKREEKAR 766
Score = 28.5 bits (64), Expect = 8.4
Identities = 11/28 (39%), Positives = 23/28 (82%)
Query: 3 EEEDEKKKKKKKKKEEEEKKQKKQKKKK 30
+ +EK KKKKKK++++E++ K+++K +
Sbjct: 739 DSVEEKTKKKKKKEKKKEEEYKREEKAR 766
>gnl|CDD|215590 PLN03123, PLN03123, poly [ADP-ribose] polymerase; Provisional.
Length = 981
Score = 30.5 bits (69), Expect = 1.8
Identities = 11/34 (32%), Positives = 18/34 (52%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVN 34
EE + E KK K+KK+ + K+ K + V+
Sbjct: 195 AEERKQESKKGAKRKKDASGDDKSKKAKTDRDVS 228
>gnl|CDD|240292 PTZ00148, PTZ00148, 40S ribosomal protein S8; Provisional.
Length = 205
Score = 30.0 bits (68), Expect = 1.8
Identities = 19/47 (40%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
Query: 9 KKKKKKKKEEEEKKQKKQKKKKKKVNKVKPVHIIFYRDGVSEGQFQA 55
KKKK KK+EE +K +KK + K+ K H I D QFQ+
Sbjct: 123 KKKKYKKEEENKKAKKKSESLVAKLEVRKKNHKI---DKALLEQFQS 166
>gnl|CDD|206034 pfam13863, DUF4200, Domain of unknown function (DUF4200). This
family is found in eukaryotes. It is a coiled-coil
domain of unknwon function.
Length = 126
Score = 29.1 bits (66), Expect = 1.9
Identities = 13/29 (44%), Positives = 24/29 (82%)
Query: 4 EEDEKKKKKKKKKEEEEKKQKKQKKKKKK 32
+E+E K+++ +KK EEEKK +K+K+++ K
Sbjct: 56 KENEAKRRRAEKKAEEEKKLRKEKEEEIK 84
>gnl|CDD|202045 pfam01920, Prefoldin_2, Prefoldin subunit. This family includes
prefoldin subunits that are not detected by pfam02996.
Length = 106
Score = 28.7 bits (65), Expect = 1.9
Identities = 9/41 (21%), Positives = 26/41 (63%)
Query: 2 EEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNKVKPVHII 42
EE ++E +++K+ ++E + +K+ +K +K++ ++K
Sbjct: 61 EEVKEELEERKETLEKEIKTLEKQLEKLEKELEELKEELYK 101
Score = 26.4 bits (59), Expect = 9.6
Identities = 11/41 (26%), Positives = 26/41 (63%), Gaps = 6/41 (14%)
Query: 1 EEEEEDEKKKKKKKKKE------EEEKKQKKQKKKKKKVNK 35
EE +E+ +++K+ +KE + EK +K+ ++ K+++ K
Sbjct: 61 EEVKEELEERKETLEKEIKTLEKQLEKLEKELEELKEELYK 101
>gnl|CDD|220990 pfam11124, Pho86, Inorganic phosphate transporter Pho86. Pho86p is
an ER protein which is produced in response to phosphate
starvation. It is essential for growth when phosphate
levels are limiting. Pho86p is also involved in the
regulation of Pho84p, a high-affinity phosphate
transporter which is localised to the endoplasmic
reticulum (ER) in low phosphate medium. When the level
of phosphate increases Pho84p is transported to the
vacuole. Pho86p is required for packaging of Pho84p in
to COPII vesicles.
Length = 296
Score = 30.0 bits (68), Expect = 2.0
Identities = 11/32 (34%), Positives = 14/32 (43%)
Query: 15 KKEEEEKKQKKQKKKKKKVNKVKPVHIIFYRD 46
K K ++ K +K K HII YRD
Sbjct: 148 KDYASLPKSEETNKPRKLTENGKNTHIIVYRD 179
>gnl|CDD|204519 pfam10587, EF-1_beta_acid, Eukaryotic elongation factor 1 beta
central acidic region.
Length = 28
Score = 26.4 bits (59), Expect = 2.0
Identities = 7/24 (29%), Positives = 15/24 (62%), Gaps = 2/24 (8%)
Query: 1 EEEEEDEKKKKKKKK--KEEEEKK 22
++EEEDE+ ++ +++ KK
Sbjct: 5 DDEEEDEEAERIREERLAAYAAKK 28
>gnl|CDD|217884 pfam04086, SRP-alpha_N, Signal recognition particle, alpha subunit,
N-terminal. SRP is a complex of six distinct
polypeptides and a 7S RNA that is essential for
transferring nascent polypeptide chains that are
destined for export from the cell to the translocation
apparatus of the endoplasmic reticulum (ER) membrane.
SRP binds hydrophobic signal sequences as they emerge
from the ribosome, and arrests translation.
Length = 272
Score = 29.7 bits (67), Expect = 2.1
Identities = 7/30 (23%), Positives = 10/30 (33%)
Query: 7 EKKKKKKKKKEEEEKKQKKQKKKKKKVNKV 36
K +E+ K K KK K +
Sbjct: 185 AKLSSTASSGDEKSPKSKAAPKKAGKKMRK 214
>gnl|CDD|222665 pfam14303, NAM-associated, No apical meristem-associated C-terminal
domain. This domain is found in a number of different
types of plant proteins including NAM-like proteins.
Length = 147
Score = 29.3 bits (66), Expect = 2.2
Identities = 9/29 (31%), Positives = 19/29 (65%)
Query: 7 EKKKKKKKKKEEEEKKQKKQKKKKKKVNK 35
+K K KK++ E+E++K+++ K + K
Sbjct: 75 DKLKAKKEEAEKEKEKEERFMKALAEAEK 103
Score = 28.9 bits (65), Expect = 2.7
Identities = 13/37 (35%), Positives = 23/37 (62%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNKVK 37
E E+E EK+++ K E EK++ + +KKK + +K
Sbjct: 83 EAEKEKEKEERFMKALAEAEKERAELEKKKAEAKLMK 119
Score = 28.5 bits (64), Expect = 3.2
Identities = 8/33 (24%), Positives = 21/33 (63%)
Query: 3 EEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNK 35
+ + E+ +K+K+K+E K + +K++ ++ K
Sbjct: 78 KAKKEEAEKEKEKEERFMKALAEAEKERAELEK 110
Score = 27.3 bits (61), Expect = 8.1
Identities = 10/25 (40%), Positives = 18/25 (72%)
Query: 8 KKKKKKKKKEEEEKKQKKQKKKKKK 32
++ K K KKEE EK+++K+++ K
Sbjct: 73 RRDKLKAKKEEAEKEKEKEERFMKA 97
>gnl|CDD|220818 pfam10595, UPF0564, Uncharacterized protein family UPF0564. This
family of proteins has no known function. However, one
of the members is annotated as an EF-hand family
protein.
Length = 349
Score = 30.1 bits (68), Expect = 2.2
Identities = 15/40 (37%), Positives = 25/40 (62%), Gaps = 2/40 (5%)
Query: 2 EEEEDEKKKKKKKKKEEEEKKQKKQKKKK--KKVNKVKPV 39
E+++ EKK ++ K EEE K +K++++ KK K PV
Sbjct: 15 EKKKREKKSIRQSKLEEELNKLEKKEEEAECKKKFKANPV 54
Score = 29.7 bits (67), Expect = 2.7
Identities = 12/37 (32%), Positives = 27/37 (72%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNKVK 37
+ E+K+K+ K+++E+++ ++++KKKK+ KVK
Sbjct: 275 VKFLRTERKEKEAKEQQEKKELEQRKKKKKEMAPKVK 311
Score = 28.2 bits (63), Expect = 8.2
Identities = 12/35 (34%), Positives = 24/35 (68%)
Query: 2 EEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNKV 36
E EK+ K++++K+E E+++KK+K+ KV +
Sbjct: 279 RTERKEKEAKEQQEKKELEQRKKKKKEMAPKVKQR 313
>gnl|CDD|226800 COG4354, COG4354, Predicted bile acid beta-glucosidase
[Carbohydrate transport and metabolism].
Length = 721
Score = 30.2 bits (68), Expect = 2.3
Identities = 21/106 (19%), Positives = 39/106 (36%), Gaps = 18/106 (16%)
Query: 119 EGDGSRNNNVRP-GTIVDTTITHP----TDLDFYLVSHQSIQVGI--LTQCIKEKTV--- 168
+ N VRP G+ V+ P ++F L +H IQ+G+ + E
Sbjct: 620 ASEYCAANGVRPDGSPVNPLSVQPLSVWPGINFALAAH-MIQMGMKDEGFELAENVWNQL 678
Query: 169 ----FKMNPATTGNILLKINAKLNGINHYVNKVKPVHIIFYRDGVS 210
+ + N + + N ++HYV ++F +G
Sbjct: 679 KNNGLQFRQPSAINA---VGGETNRLSHYVGSPSIWALLFLLNGKI 721
>gnl|CDD|226873 COG4467, COG4467, Regulator of replication initiation timing
[Replication, recombination, and repair].
Length = 114
Score = 28.6 bits (64), Expect = 2.4
Identities = 11/43 (25%), Positives = 21/43 (48%)
Query: 5 EDEKKKKKKKKKEEEEKKQKKQKKKKKKVNKVKPVHIIFYRDG 47
E+EK +++ + E+ KK+K KK + Y++G
Sbjct: 44 ENEKLRERLGEPTLEKTAVKKEKPAVKKKGEGYDNLARLYQEG 86
>gnl|CDD|216872 pfam02096, 60KD_IMP, 60Kd inner membrane protein.
Length = 193
Score = 29.4 bits (67), Expect = 2.4
Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 11/50 (22%)
Query: 7 EKKKKKKKKKEEEEKKQKKQKK--KKKKVNKVK---------PVHIIFYR 45
E K+ ++K K++ +K Q++ K K+ VN + P+ I YR
Sbjct: 38 EIKEIQEKYKDDPQKLQQEMMKLYKEHGVNPLAGCLPMLIQLPIFIALYR 87
>gnl|CDD|237744 PRK14521, rpsP, 30S ribosomal protein S16; Provisional.
Length = 186
Score = 29.4 bits (66), Expect = 2.4
Identities = 6/37 (16%), Positives = 15/37 (40%)
Query: 2 EEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNKVKP 38
+ ++ KK + +K+ E + + +KK
Sbjct: 123 KAKKAAKKAALEAEKKVNEARAEAVAEKKAAEAAAVA 159
Score = 29.4 bits (66), Expect = 2.6
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Query: 4 EEDEKKKKKKKKKEEEEKKQKKQK--KKKKKVNKVK 37
EE E K KK K + KK K+ + +KKVN+ +
Sbjct: 108 EEKEGKVNAKKDKLSKAKKAAKKAALEAEKKVNEAR 143
>gnl|CDD|233042 TIGR00598, rad14, DNA repair protein. All proteins in this family
for which functions are known are used for the
recognition of DNA damage as part of nucleotide excision
repair. This family is based on the phylogenomic
analysis of JA Eisen (1999, Ph.D. Thesis, Stanford
University) [DNA metabolism, DNA replication,
recombination, and repair].
Length = 172
Score = 29.4 bits (66), Expect = 2.4
Identities = 19/71 (26%), Positives = 35/71 (49%), Gaps = 8/71 (11%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKK-QKKQKKKKKKVN-------KVKPVHIIFYRDGVSEGQ 52
EE ++EK+++++ K+E +EKK +KK K+ ++ V K VH + + +
Sbjct: 93 EEALDEEKERREESKEEMKEKKFEKKLKELRRAVRSSEYTNKKEGRVHEHEFGPETNGVE 152
Query: 53 FQAVMRRCGPC 63
R C C
Sbjct: 153 EDTYRRTCTTC 163
>gnl|CDD|235401 PRK05306, infB, translation initiation factor IF-2; Validated.
Length = 746
Score = 30.2 bits (69), Expect = 2.5
Identities = 9/35 (25%), Positives = 20/35 (57%)
Query: 4 EEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNKVKP 38
EE+E +K++ K++ EEE K + ++ + +
Sbjct: 39 EEEEARKEEAKREAEEEAKAEAEEAAAAEAEEEAK 73
>gnl|CDD|220102 pfam09073, BUD22, BUD22. BUD22 has been shown in yeast to be a
nuclear protein involved in bud-site selection. It plays
a role in positioning the proximal bud pole signal. More
recently it has been shown to be involved in ribosome
biogenesis.
Length = 424
Score = 29.8 bits (67), Expect = 2.5
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 8 KKKKKKKKKEEEEKKQKKQKKKKKKVNKVK 37
KK K KKK ++ +KK+ K+ K + +
Sbjct: 147 KKGKAKKKTKKSKKKEAKESSDKDDEEESE 176
Score = 29.0 bits (65), Expect = 4.9
Identities = 10/33 (30%), Positives = 18/33 (54%)
Query: 5 EDEKKKKKKKKKEEEEKKQKKQKKKKKKVNKVK 37
E + KK K KKK ++ KK++ ++ K +
Sbjct: 143 ETKAKKGKAKKKTKKSKKKEAKESSDKDDEEES 175
Score = 28.3 bits (63), Expect = 7.6
Identities = 10/30 (33%), Positives = 19/30 (63%)
Query: 2 EEEEDEKKKKKKKKKEEEEKKQKKQKKKKK 31
++ + +KK KK KKKE +E K +++ +
Sbjct: 147 KKGKAKKKTKKSKKKEAKESSDKDDEEESE 176
>gnl|CDD|219978 pfam08701, GN3L_Grn1, GNL3L/Grn1 putative GTPase. Grn1 (yeast)
and GNL3L (human) are putative GTPases which are
required for growth and play a role in processing of
nucleolar pre-rRNA. This family contains a potential
nuclear localisation signal.
Length = 80
Score = 27.6 bits (62), Expect = 2.6
Identities = 12/30 (40%), Positives = 15/30 (50%), Gaps = 4/30 (13%)
Query: 7 EKKKKK----KKKKEEEEKKQKKQKKKKKK 32
K +KK +K +E KK K KKKK
Sbjct: 4 YKIEKKVAEHHRKLRKEAKKNPTWKSKKKK 33
Score = 27.2 bits (61), Expect = 4.2
Identities = 10/30 (33%), Positives = 23/30 (76%)
Query: 3 EEEDEKKKKKKKKKEEEEKKQKKQKKKKKK 32
EE +EKK+K++++KE ++ +K ++ + +K
Sbjct: 49 EEIEEKKRKQEEEKERRKEARKAERAEARK 78
Score = 26.8 bits (60), Expect = 5.6
Identities = 10/25 (40%), Positives = 19/25 (76%)
Query: 13 KKKKEEEEKKQKKQKKKKKKVNKVK 37
KK+K+EEEK+++K+ +K ++ K
Sbjct: 54 KKRKQEEEKERRKEARKAERAEARK 78
>gnl|CDD|216581 pfam01577, Peptidase_S30, Potyvirus P1 protease. The potyviridae
family positive stand RNA viruses with genome encoding
a polyprotein. members include zucchini yellow mosaic
virus, and turnip mosaic viruses which cause
considerable losses of crops worldwide. This family
consists of a C terminus region from various plant
potyvirus P1 proteins (found at the N terminus of the
polyprotein). The C terminus of P1 is a serine-type
protease responsible for autocatalytic cleavage between
P1 and the helper component protease pfam00851. The
entire P1 protein may be involved in virus-host
interactions.
Length = 245
Score = 29.6 bits (67), Expect = 2.6
Identities = 13/44 (29%), Positives = 21/44 (47%)
Query: 8 KKKKKKKKKEEEEKKQKKQKKKKKKVNKVKPVHIIFYRDGVSEG 51
KK++K K+EE E++Q Q V+K+ P+ S
Sbjct: 38 AKKREKLKREEREERQFLQGAYASIVSKITPIGTDKVSKTESVS 81
>gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional.
Length = 520
Score = 29.7 bits (68), Expect = 2.7
Identities = 10/35 (28%), Positives = 26/35 (74%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNK 35
EEE ++K+K+ ++K++E EKK+++ ++ ++ +
Sbjct: 108 REEELEKKEKELEQKQQELEKKEEELEELIEEQLQ 142
Score = 28.6 bits (65), Expect = 5.9
Identities = 13/37 (35%), Positives = 27/37 (72%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNKVK 37
+EE D K + +K++EE EKK+K+ ++K++++ K +
Sbjct: 94 KEENLDRKLELLEKREEELEKKEKELEQKQQELEKKE 130
Score = 28.2 bits (64), Expect = 9.8
Identities = 9/29 (31%), Positives = 23/29 (79%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKK 29
+E+E ++K+++ +KK+EE E+ ++Q ++
Sbjct: 115 KEKELEQKQQELEKKEEELEELIEEQLQE 143
>gnl|CDD|173965 cd08045, TAF4, TATA Binding Protein (TBP) Associated Factor 4
(TAF4) is one of several TAFs that bind TBP and is
involved in forming Transcription Factor IID (TFIID)
complex. The TATA Binding Protein (TBP) Associated
Factor 4 (TAF4) is one of several TAFs that bind TBP and
are involved in forming the Transcription Factor IID
(TFIID) complex. TFIID is one of seven General
Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE,
TFIIF, and TFIID) that are involved in accurate
initiation of transcription by RNA polymerase II in
eukaryote. TFIID plays an important role in the
recognition of promoter DNA and assembly of the
pre-initiation complex. TFIID complex is composed of the
TBP and at least 13 TAFs. TAFs from various species were
originally named by their predicted molecular weight or
their electrophoretic mobility in polyacrylamide gels. A
new, unified nomenclature for the pol II TAFs has been
suggested to show the relationship between TAF orthologs
and paralogs. Several hypotheses are proposed for TAFs
functions such as serving as activator-binding sites,
core-promoter recognition or a role in essential
catalytic activity. Each TAF, with the help of a
specific activator, is required only for the expression
of subset of genes and is not universally involved for
transcription as are GTFs. In yeast and human cells,
TAFs have been found as components of other complexes
besides TFIID. Several TAFs interact via histone-fold
(HFD) motifs; HFD is the interaction motif involved in
heterodimerization of the core histones and their
assembly into nucleosome octamers. The minimal HFD
contains three alpha-helices linked by two loops and is
found in core histones, TAFS and many other
transcription factors. TFIID has a histone octamer-like
substructure. TAF4 domain interacts with TAF12 and makes
a novel histone-like heterodimer that binds DNA and has
a core promoter function of a subset of genes.
Length = 212
Score = 29.2 bits (66), Expect = 2.7
Identities = 10/35 (28%), Positives = 23/35 (65%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNK 35
EEE+ DE+++++ + + +Q + K+K K++ K
Sbjct: 126 EEEKRDEEERERLLRAAKSRSEQSRLKQKAKEMQK 160
Score = 28.8 bits (65), Expect = 3.8
Identities = 12/45 (26%), Positives = 24/45 (53%), Gaps = 12/45 (26%)
Query: 2 EEEEDEKKKKKKKKKEEEEKKQKK------------QKKKKKKVN 34
E+ K+K K+ +KEE+E+ + + +KKKK+++
Sbjct: 146 SEQSRLKQKAKEMQKEEDEEMRHRAANATALAAIGGRKKKKRRIT 190
Score = 27.7 bits (62), Expect = 8.0
Identities = 8/35 (22%), Positives = 22/35 (62%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNK 35
E EEE+++ ++++++ K + +Q + K+K +
Sbjct: 123 EREEEEKRDEEERERLLRAAKSRSEQSRLKQKAKE 157
>gnl|CDD|225871 COG3334, COG3334, Uncharacterized conserved protein [Function
unknown].
Length = 192
Score = 29.4 bits (66), Expect = 2.7
Identities = 10/37 (27%), Positives = 21/37 (56%)
Query: 2 EEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNKVKP 38
E+++ E K +++++ KQ + K K +K+KP
Sbjct: 97 EKKKAELKDLEEEREGILRSKQAEDGKLVKIYSKMKP 133
>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional.
Length = 880
Score = 30.0 bits (68), Expect = 2.8
Identities = 11/33 (33%), Positives = 21/33 (63%)
Query: 3 EEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNK 35
++E EK ++ KKK E EKK + +++ ++ K
Sbjct: 545 KKELEKLEELKKKLAELEKKLDELEEELAELLK 577
Score = 29.6 bits (67), Expect = 3.7
Identities = 11/39 (28%), Positives = 25/39 (64%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNKVKPV 39
E EE++E+ ++ KKK +E EK+ ++ +++ + + K
Sbjct: 332 ELEEKEERLEELKKKLKELEKRLEELEERHELYEEAKAK 370
>gnl|CDD|218311 pfam04888, SseC, Secretion system effector C (SseC) like family.
SseC is a secreted protein that forms a complex
together with SecB and SecD on the surface of
Salmonella. All these proteins are secreted by the type
III secretion system. Many mucosal pathogens use type
III secretion systems for the injection of effector
proteins into target cells. SecB, SseC and SecD are
inserted into the target cell membrane. where they form
a small pore or translocon. In addition to SseC, this
family includes the bacterial secreted proteins PopB,
PepB, YopB and EspD which are thought to be directly
involved in pore formation, and type III secretion
system translocon.
Length = 303
Score = 29.4 bits (66), Expect = 2.9
Identities = 10/37 (27%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
Query: 2 EEEEDEKKKKKKKKKEEEEKKQKKQKKKKKK--VNKV 36
E D+++KK ++ +E+ +K +K ++ KK +K+
Sbjct: 25 ERARDKQEKKAEEYQEQIKKAIEKAEEAKKSGIFSKI 61
>gnl|CDD|240370 PTZ00342, PTZ00342, acyl-CoA synthetase; Provisional.
Length = 746
Score = 29.7 bits (67), Expect = 3.0
Identities = 33/126 (26%), Positives = 45/126 (35%), Gaps = 37/126 (29%)
Query: 2 EEEEDEKKKKKKKKKEEEEK---------KQKKQKKKKKKVNKVKPVHI--IFYRDGVSE 50
E + EK +K K KE+ +K K K K+ P I I Y G S
Sbjct: 258 LEYDKEKLEKIKDLKEKAKKLGISIILFDDMTKNKTTNYKIQNEDPDFITSIVYTSGTS- 316
Query: 51 GQFQAVMRRCGPCSNRSVAGLSYTIFTGAEISAIKRACQGVEANYNPKVTFLVVQKRHHT 110
G+ + VM SN++ L T+ + S K YNPK H
Sbjct: 317 GKPKGVM-----LSNKN---LYNTVVPLCKHSIFK--------KYNPK---------THL 351
Query: 111 RFFPTS 116
+ P S
Sbjct: 352 SYLPIS 357
>gnl|CDD|218215 pfam04696, Pinin_SDK_memA, pinin/SDK/memA/ protein conserved
region. Members of this family have very varied
localisations within the eukaryotic cell. pinin is
known to localise at the desmosomes and is implicated
in anchoring intermediate filaments to the desmosomal
plaque. SDK2/3 is a dynamically localised nuclear
protein thought to be involved in modulation of
alternative pre-mRNA splicing. memA is a tumour marker
preferentially expressed in human melanoma cell lines.
A common feature of the members of this family is that
they may all participate in regulating protein-protein
interactions.
Length = 131
Score = 28.6 bits (64), Expect = 3.1
Identities = 10/34 (29%), Positives = 24/34 (70%)
Query: 4 EEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNKVK 37
EE K+K++ E E+K ++++K++++++ K K
Sbjct: 26 EESRLTSKEKRRAEIEQKLEEQEKQEREELRKEK 59
Score = 28.2 bits (63), Expect = 3.5
Identities = 12/36 (33%), Positives = 27/36 (75%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNKV 36
EE+E+ E+++ +K+K+E E++++KQ + +K K+
Sbjct: 45 EEQEKQEREELRKEKRELFEERRRKQLELRKLEQKM 80
>gnl|CDD|219761 pfam08243, SPT2, SPT2 chromatin protein. This family includes the
Saccharomyces cerevisiae protein SPT2 which is a
chromatin protein involved in transcriptional
regulation.
Length = 116
Score = 28.3 bits (63), Expect = 3.2
Identities = 10/34 (29%), Positives = 22/34 (64%)
Query: 2 EEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNK 35
+EE + + + + E ++++++K+KKKK NK
Sbjct: 83 KEERRSARMARLEDERELAREEEEEKRKKKKKNK 116
Score = 27.9 bits (62), Expect = 4.1
Identities = 8/32 (25%), Positives = 21/32 (65%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKK 32
+EE + + + ++E +++++++KKKKK
Sbjct: 83 KEERRSARMARLEDERELAREEEEEKRKKKKK 114
>gnl|CDD|220838 pfam10659, Trypan_glycop_C, Trypanosome variant surface
glycoprotein C-terminal domain. The trypanosome
parasite expresses these proteins to evade the immune
response.
Length = 98
Score = 27.8 bits (62), Expect = 3.2
Identities = 12/42 (28%), Positives = 20/42 (47%), Gaps = 10/42 (23%)
Query: 1 EEEEEDEKKKKKKKKKEEE----------EKKQKKQKKKKKK 32
+++E+D K K K+ K ++ E +K K KK K
Sbjct: 19 DKKEDDGKCKPKEGKAKKNGAPVTQTAGTETTTEKCKGKKDK 60
>gnl|CDD|146145 pfam03357, Snf7, Snf7. This family of proteins are involved in
protein sorting and transport from the endosome to the
vacuole/lysosome in eukaryotic cells.
Vacuoles/lysosomes play an important role in the
degradation of both lipids and cellular proteins. In
order to perform this degradative function,
vacuoles/lysosomes contain numerous hydrolases which
have been transported in the form of inactive
precursors via the biosynthetic pathway and are
proteolytically activated upon delivery to the
vacuole/lysosome. The delivery of transmembrane
proteins, such as activated cell surface receptors to
the lumen of the vacuole/lysosome, either for
degradation/downregulation, or in the case of
hydrolases, for proper localisation, requires the
formation of multivesicular bodies (MVBs). These late
endosomal structures are formed by invaginating and
budding of the limiting membrane into the lumen of the
compartment. During this process, a subset of the
endosomal membrane proteins is sorted into the forming
vesicles. Mature MVBs fuse with the vacuole/lysosome,
thereby releasing cargo containing vesicles into its
hydrolytic lumen for degradation. Endosomal proteins
that are not sorted into the intralumenal MVB vesicles
are either recycled back to the plasma membrane or
Golgi complex, or remain in the limiting membrane of
the MVB and are thereby transported to the limiting
membrane of the vacuole/lysosome as a consequence of
fusion. Therefore, the MVB sorting pathway plays a
critical role in the decision between recycling and
degradation of membrane proteins. A few archaeal
sequences are also present within this family.
Length = 169
Score = 28.8 bits (65), Expect = 3.2
Identities = 8/37 (21%), Positives = 19/37 (51%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNKVK 37
+ E +KK++ +KK ++ + + K+ KK +
Sbjct: 8 KAIRELDKKQESLEKKIKKLEAEIKKLAKKGNKDAAL 44
>gnl|CDD|217970 pfam04220, YihI, Der GTPase activator (YihI). YihI activates the
GTPase activity of Der, a 50S ribosomal subunit
stability factor. The stimulation is specific to Der as
YihI does not stimulate the GTPase activity of Era or
ObgE. The interaction of YihI with Der requires only
the C-terminal 78 amino acids of YihI. A yihI deletion
mutant is viable and shows a shorter lag period, but
the same post-lag growth rate as a wild-type strain.
yihI is expressed during the lag period. Overexpression
of yihI inhibits cell growth and biogenesis of the 50S
ribosomal subunit. YihI is an unusual, highly
hydrophilic protein with an uneven distribution of
charged residues, resulting in an N-terminal region
with high pI and a C-terminal region with low pI.
Length = 169
Score = 28.9 bits (65), Expect = 3.3
Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 6/36 (16%)
Query: 2 EEEEDEKKKKKKKKK------EEEEKKQKKQKKKKK 31
E E ++KKK+K K EE E +++K +KK
Sbjct: 25 EARERKRKKKRKGLKSGSRHNEESESQKQKGAAQKK 60
>gnl|CDD|218177 pfam04615, Utp14, Utp14 protein. This protein is found to be part
of a large ribonucleoprotein complex containing the U3
snoRNA. Depletion of the Utp proteins impedes production
of the 18S rRNA, indicating that they are part of the
active pre-rRNA processing complex. This large RNP
complex has been termed the small subunit (SSU)
processome.
Length = 728
Score = 29.6 bits (67), Expect = 3.4
Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Query: 1 EEEEEDEKKKKKKKKK--EEEEKKQKKQKKKKKKVNKVK 37
EE EE KK ++K E EK+ + +K KK+ N+ K
Sbjct: 410 EENEEPSKKNVGRRKFGPENGEKEAESKKLKKENKNEFK 448
Score = 29.3 bits (66), Expect = 4.5
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 6/34 (17%)
Query: 8 KKKKKKKKKEEEEKKQKKQKKKKK------KVNK 35
K+K++ K E KK+K++ KK K K NK
Sbjct: 634 KRKRRFLTKIEGVKKEKRKDKKLKNVIINEKRNK 667
>gnl|CDD|221122 pfam11490, DNA_pol3_alph_N, DNA polymerase III polC-type
N-terminus. This is an N-terminal domain of DNA
polymerase III polC subunit A that is found only in
Firmicutes. DNA polymerase polC-type III enzyme
functions as the 'replicase' in low G + C Gram-positive
bacteria. Purine asymmetry is a characteristic of
organisms with a heterodimeric DNA polymerase III
alpha-subunit constituted by polC which probably plays a
direct role in the maintenance of strand-biased gene
distribution; since, among prokaryotic genomes, the
distribution of genes on the leading and lagging strands
of the replication fork is known to be biased. The
domain is associated with DNA_pol3_alpha pfam07733.
Length = 180
Score = 28.8 bits (65), Expect = 3.5
Identities = 11/39 (28%), Positives = 22/39 (56%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNKVKPV 39
+E E+E ++ +++K+EEE K ++ + KK K
Sbjct: 138 DESSEEEIEEFEEQKEEEEAKLAEEALEALKKKEAEKKK 176
Score = 28.1 bits (63), Expect = 6.9
Identities = 10/39 (25%), Positives = 23/39 (58%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNKVKPV 39
E EE+ ++ +++K++EE + ++ + KKK + K
Sbjct: 139 ESSEEEIEEFEEQKEEEEAKLAEEALEALKKKEAEKKKK 177
>gnl|CDD|234547 TIGR04330, cas_Cpf1, CRISPR-associated protein Cpf1, subtype
PREFRAN. This family is the long protein of a novel
CRISPR subtype, PREFRAN, which is most common in
Prevotella and Francisella, although widely distributed.
The PREFRAN type has Cas1, Cas2, and Cas4, but lacks the
helicase Cas3 and endonuclease Cas3-HD.
Length = 1287
Score = 29.4 bits (66), Expect = 3.7
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Query: 4 EEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNKVKPVHIIFYRDGVSE 50
EE KK+ + +K + KK+K ++K KK V K + I F D + +
Sbjct: 378 EEYIKKQIEPRKGKS--KKEKYEEKVKKVVKKQDYLSIQFINDLLEK 422
>gnl|CDD|218941 pfam06217, GAGA_bind, GAGA binding protein-like family. This
family includes gbp a protein from Soybean that binds to
GAGA element dinucleotide repeat DNA. It seems likely
that the this domain mediates DNA binding. This putative
domain contains several conserved cysteines and a
histidine suggesting this may be a zinc-binding DNA
interaction domain.
Length = 301
Score = 29.1 bits (65), Expect = 3.8
Identities = 12/32 (37%), Positives = 16/32 (50%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKK 32
E ++ KK KK + + K K KK KKK
Sbjct: 139 TAPPEAKEVKKPKKGQSPKVPKAPKPKKPKKK 170
>gnl|CDD|225606 COG3064, TolA, Membrane protein involved in colicin uptake [Cell
envelope biogenesis, outer membrane].
Length = 387
Score = 29.1 bits (65), Expect = 3.8
Identities = 10/33 (30%), Positives = 17/33 (51%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKV 33
++EE+ K ++KKK E K + + K K
Sbjct: 133 QQEEQARKAAAEQKKKAEAAKAKAAAEAAKLKA 165
Score = 28.8 bits (64), Expect = 5.8
Identities = 8/31 (25%), Positives = 23/31 (74%)
Query: 2 EEEEDEKKKKKKKKKEEEEKKQKKQKKKKKK 32
+ E++ K ++++K+ EE +KQ + ++K+++
Sbjct: 105 QLEKERLKAQEQQKQAEEAEKQAQLEQKQQE 135
Score = 28.0 bits (62), Expect = 8.7
Identities = 12/41 (29%), Positives = 18/41 (43%), Gaps = 4/41 (9%)
Query: 1 EEEEEDEKKKK----KKKKKEEEEKKQKKQKKKKKKVNKVK 37
E+ + E + K KK + EEK ++KK K K
Sbjct: 204 AEKAKAEAEAKAKAEKKAEAAAEEKAAAEKKKAAAKAKADK 244
>gnl|CDD|203441 pfam06421, LepA_C, GTP-binding protein LepA C-terminus. This
family consists of the C-terminal region of several
pro- and eukaryotic GTP-binding LepA proteins.
Length = 108
Score = 27.9 bits (63), Expect = 3.9
Identities = 11/26 (42%), Positives = 17/26 (65%), Gaps = 3/26 (11%)
Query: 12 KKKKKEEEEKKQKKQKKKKKKVNKVK 37
+KKK E KQK+ KK+ K++ V+
Sbjct: 74 RKKKLLE---KQKEGKKRMKQIGNVE 96
>gnl|CDD|218427 pfam05093, CIAPIN1, Cytokine-induced anti-apoptosis inhibitor 1,
Fe-S biogenesis. Anamorsin, subsequently named CIAPIN1
for cytokine-induced anti-apoptosis inhibitor 1, in
humans is the homologue of yeast Dre2, a conserved
soluble eukaryotic Fe-S cluster protein, that functions
in cytosolic Fe-S protein biogenesis. It is found in
both the cytoplasm and in the mitochondrial
intermembrane space (IMS). CIAPIN1 is found to be
up-regulated in hepatocellular cancer, is considered to
be a downstream effector of the receptor tyrosine
kinase-Ras signalling pathway, and is essential in
mouse definitive haematopoiesis. Dre2 has been found to
interact with the yeast reductase Tah18, forming a
tight cytosolic complex implicated in the response to
high levels of oxidative stress.
Length = 97
Score = 27.7 bits (62), Expect = 3.9
Identities = 12/70 (17%), Positives = 23/70 (32%), Gaps = 18/70 (25%)
Query: 3 EEEDEKKKKKKK--------KKEEEEKKQKKQKKKKKKVNKVKPVHIIFYRDGVSEGQFQ 54
+ KK+K EEEE+++K + +++ + E +
Sbjct: 12 RKCGPGPGKKRKACKNCTCGLAEEEEQEKKDKSAAQQQKVEDDLA----------EITVE 61
Query: 55 AVMRRCGPCS 64
CG C
Sbjct: 62 GKTSSCGNCY 71
>gnl|CDD|221250 pfam11831, Myb_Cef, pre-mRNA splicing factor component. This
family is a region of the Myb-Related Cdc5p/Cef1
proteins, in fungi, and is part of the pre-mRNA splicing
factor complex.
Length = 363
Score = 29.3 bits (66), Expect = 3.9
Identities = 11/42 (26%), Positives = 25/42 (59%), Gaps = 9/42 (21%)
Query: 1 EEEEEDEKKKKK---------KKKKEEEEKKQKKQKKKKKKV 33
EEEEE E+ +++ +K+ EE K++++ +++ +V
Sbjct: 152 EEEEEPEEMEEELEEDAADRDARKRAAEEAKEQEELRRRSQV 193
>gnl|CDD|215641 PLN03237, PLN03237, DNA topoisomerase 2; Provisional.
Length = 1465
Score = 29.4 bits (66), Expect = 4.0
Identities = 8/36 (22%), Positives = 16/36 (44%)
Query: 2 EEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNKVK 37
+ EE +K ++ + E +K ++ KK K
Sbjct: 1174 KAEEAREKLQRAAARGESGAAKKVSRQAPKKPAPKK 1209
>gnl|CDD|220172 pfam09309, FCP1_C, FCP1, C-terminal. The C-terminal domain of
FCP-1 is required for interaction with the carboxy
terminal domain of RAP74. Interaction relies extensively
on van der Waals contacts between hydrophobic residues
situated within alpha-helices in both domains.
Length = 263
Score = 28.8 bits (64), Expect = 4.0
Identities = 8/30 (26%), Positives = 19/30 (63%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKK 30
E ++ + +KKK EEE+++ + +K++
Sbjct: 158 EGSDDSDSEKKKPPGNEEEQEQAPQPRKQQ 187
>gnl|CDD|237028 PRK12267, PRK12267, methionyl-tRNA synthetase; Reviewed.
Length = 648
Score = 29.4 bits (67), Expect = 4.1
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKK 29
EEE K++ + +E E+K+KK +K
Sbjct: 513 EEEIAYIKEQMEGSAPKEPEEKEKKPEKP 541
>gnl|CDD|149048 pfam07768, PVL_ORF50, PVL ORF-50-like family. This is a family
of sequences found in both bacteria and bacteriophages.
This region is approximately 130 residues long and in
some cases is found as part of the PVL
(Panton-Valentine leukocidin) group of genes, which
encode a member of the leukocidin group of bacterial
toxins that kill leukocytes by creation of pores in the
cell membrane. PVL appears to be a virulence factor
associated with a number of human diseases.
Length = 118
Score = 27.9 bits (62), Expect = 4.2
Identities = 9/35 (25%), Positives = 24/35 (68%)
Query: 4 EEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNKVKP 38
E E KK + ++E +E++ +++++K+ ++ + KP
Sbjct: 53 EYREIKKSENIEQERKERELERKRRKEAELRRKKP 87
>gnl|CDD|233290 TIGR01141, hisC, histidinol-phosphate aminotransferase. Alternate
names: histidinol-phosphate transaminase; imidazole
acetol-phosphate transaminase Histidinol-phosphate
aminotransferase is a pyridoxal-phosphate dependent
enzyme [Amino acid biosynthesis, Histidine family].
Length = 346
Score = 29.2 bits (66), Expect = 4.3
Identities = 19/74 (25%), Positives = 27/74 (36%), Gaps = 10/74 (13%)
Query: 320 EMTYYLCHLFSRCTRSVSYPAPTY--YAHLAAFRGRVYIK-----NRHLDMNNLPRENQV 372
E+ L F +V P PTY Y A G +K + LD+ ++
Sbjct: 82 EIIELLIRAFLEPGDAVLVPPPTYSMYEISAKIHGAEVVKVPLDEDGQLDLEDI-LVAID 140
Query: 373 HQANAEFLT--NNP 384
+ FL NNP
Sbjct: 141 DKPKLVFLCSPNNP 154
>gnl|CDD|191868 pfam07839, CaM_binding, Plant calmodulin-binding domain. The
sequences featured in this family are found repeated in
a number of plant calmodulin-binding proteins, and are
thought to constitute the calmodulin-binding domains.
Binding of the proteins to calmodulin depends on the
presence of calcium ions. These proteins are thought to
be involved in various processes, such as plant defence
responses and stolonisation or tuberization.
Length = 115
Score = 27.7 bits (62), Expect = 4.4
Identities = 14/52 (26%), Positives = 21/52 (40%), Gaps = 1/52 (1%)
Query: 1 EEEEEDEKKKK-KKKKKEEEEKKQKKQKKKKKKVNKVKPVHIIFYRDGVSEG 51
+ + E EK K KK K+ K +K +K N P + D +E
Sbjct: 14 DPKPEKEKPKSWSNLKKVILLKRFVKSLEKVRKFNPRGPNFLPLEPDPEAEK 65
>gnl|CDD|235370 PRK05244, PRK05244, Der GTPase activator; Provisional.
Length = 177
Score = 28.3 bits (64), Expect = 4.5
Identities = 10/22 (45%), Positives = 17/22 (77%)
Query: 10 KKKKKKKEEEEKKQKKQKKKKK 31
K KKK +EE + + +++K+KKK
Sbjct: 15 KSKKKTREELDAEARERKRKKK 36
>gnl|CDD|223367 COG0290, InfC, Translation initiation factor 3 (IF-3)
[Translation, ribosomal structure and biogenesis].
Length = 176
Score = 28.3 bits (64), Expect = 4.6
Identities = 12/29 (41%), Positives = 20/29 (68%), Gaps = 4/29 (13%)
Query: 14 KKKEEEEKKQKKQKKKKKKVN----KVKP 38
K K E++KK K+ KKK+K++ K++P
Sbjct: 69 KFKYEQKKKAKEAKKKQKQIQVKEIKLRP 97
>gnl|CDD|218738 pfam05766, NinG, Bacteriophage Lambda NinG protein. NinG or Rap
is involved in recombination. Rap (recombination adept
with plasmid) increases lambda-by-plasmid recombination
catalyzed by Escherichia coli's RecBCD pathway.
Length = 188
Score = 28.5 bits (64), Expect = 4.6
Identities = 7/29 (24%), Positives = 18/29 (62%)
Query: 9 KKKKKKKKEEEEKKQKKQKKKKKKVNKVK 37
K++K +E++ K + + ++++ K K K
Sbjct: 33 ALKREKAQEKKRKAEAQAERRELKARKEK 61
Score = 28.5 bits (64), Expect = 5.2
Identities = 8/26 (30%), Positives = 19/26 (73%)
Query: 6 DEKKKKKKKKKEEEEKKQKKQKKKKK 31
EK ++KK+K E + ++++ + +K+K
Sbjct: 36 REKAQEKKRKAEAQAERRELKARKEK 61
>gnl|CDD|227238 COG4901, COG4901, Ribosomal protein S25 [Translation, ribosomal
structure and biogenesis].
Length = 107
Score = 27.6 bits (61), Expect = 4.9
Identities = 9/39 (23%), Positives = 19/39 (48%), Gaps = 6/39 (15%)
Query: 3 EEEDEKKKKKKKKKEEEEKKQKKQ------KKKKKKVNK 35
E+ K KKK +++KK++ + ++ K+ K
Sbjct: 14 EKAKAGTAKDKKKWSKKKKKEEARRAVTVDEELLDKIRK 52
Score = 27.2 bits (60), Expect = 6.8
Identities = 11/31 (35%), Positives = 15/31 (48%)
Query: 8 KKKKKKKKKEEEEKKQKKQKKKKKKVNKVKP 38
K + K+KK E+ K + KKK K K
Sbjct: 4 KSQLSKEKKAEKAKAGTAKDKKKWSKKKKKE 34
>gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated
ATPase domains [General function prediction only].
Length = 530
Score = 29.1 bits (66), Expect = 5.0
Identities = 12/43 (27%), Positives = 21/43 (48%), Gaps = 8/43 (18%)
Query: 1 EEEEEDEKKKKKKKKKEEE--------EKKQKKQKKKKKKVNK 35
+E +K++K+ KE+E K KK K + K++ K
Sbjct: 247 RQEAAAYEKQQKELAKEQEWIRRGKAAASKAKKAKSRIKRLEK 289
>gnl|CDD|219408 pfam07423, DUF1510, Protein of unknown function (DUF1510). This
family consists of several hypothetical bacterial
proteins of around 200 residues in length. The function
of this family is unknown.
Length = 214
Score = 28.5 bits (64), Expect = 5.1
Identities = 7/34 (20%), Positives = 22/34 (64%)
Query: 2 EEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNK 35
E++ D +K+ ++ ++E EE+ ++ + +K+ +
Sbjct: 79 EDKGDAEKEDEESEEENEEEDEESSDENEKETEE 112
>gnl|CDD|184064 PRK13461, PRK13461, F0F1 ATP synthase subunit B; Provisional.
Length = 159
Score = 28.1 bits (63), Expect = 5.2
Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 12/58 (20%)
Query: 3 EEEDEKKKKKKKKKEEEEKKQKKQKKK-----KKKVNKVKPVHIIFYRDGVSEGQFQA 55
+E+ +K ++ K K E E K K++ KK K K V Y + V E +A
Sbjct: 49 DEDQKKARELKLKNERELKNAKEEGKKIVEEYKSKAENV-------YEEIVKEAHEEA 99
>gnl|CDD|224212 COG1293, COG1293, Predicted RNA-binding protein homologous to
eukaryotic snRNP [Transcription].
Length = 564
Score = 28.9 bits (65), Expect = 5.2
Identities = 13/48 (27%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Query: 2 EEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNKVKPV-HIIFYRDGV 48
E+ + KK ++ ++E E+ K KKKK+K + DG
Sbjct: 403 LEKAEGKKAIEEIREELIEEGLLKSKKKKRKKKEWFEKFRWFVSSDGF 450
>gnl|CDD|177089 CHL00189, infB, translation initiation factor 2; Provisional.
Length = 742
Score = 29.0 bits (65), Expect = 5.3
Identities = 13/36 (36%), Positives = 21/36 (58%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNKV 36
E+ D+K KK K + ++ K+ K K+KKK K+
Sbjct: 52 LHEKLDKKNKKFNKTDDLKDSKKTKLKQKKKIKKKL 87
>gnl|CDD|148511 pfam06936, Selenoprotein_S, Selenoprotein S (SelS). This family
consists of several mammalian selenoprotein S (SelS)
sequences. SelS is a plasma membrane protein and is
present in a variety of tissues and cell types. The
function of this family is unknown.
Length = 190
Score = 28.3 bits (63), Expect = 5.5
Identities = 11/26 (42%), Positives = 19/26 (73%), Gaps = 3/26 (11%)
Query: 2 EEEED---EKKKKKKKKKEEEEKKQK 24
+E+ D K K+K+K+ EEE+++QK
Sbjct: 93 QEDLDAKAAKFKEKQKQLEEEKRRQK 118
>gnl|CDD|217840 pfam04006, Mpp10, Mpp10 protein. This family includes proteins
related to Mpp10 (M phase phosphoprotein 10). The U3
small nucleolar ribonucleoprotein (snoRNP) is required
for three cleavage events that generate the mature 18S
rRNA from the pre-rRNA. In Saccharomyces cerevisiae,
depletion of Mpp10, a U3 snoRNP-specific protein, halts
18S rRNA production and impairs cleavage at the three U3
snoRNP-dependent sites.
Length = 613
Score = 28.8 bits (64), Expect = 5.6
Identities = 12/36 (33%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 1 EEEEEDEKK-KKKKKKKEEEEKKQKKQKKKKKKVNK 35
E + D+ + ++KKK+K KK + KK++K+ K
Sbjct: 553 ELDRTDKNRERRKKKRKRRAAKKAVTKAKKERKIGK 588
>gnl|CDD|177953 PLN02319, PLN02319, aminomethyltransferase.
Length = 404
Score = 28.5 bits (64), Expect = 5.7
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Query: 118 SEGDGSRN--NNVRPGTIVDTTITHPTDLDFYLV 149
+G G+ + N + G I DT IT TD YLV
Sbjct: 109 KDGTGTLSVFTNEKGGIIDDTVITKVTDDHIYLV 142
Score = 28.5 bits (64), Expect = 5.7
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Query: 259 SEGDGSRN--NNVRPGTIVDTTITHPTDLDFYLV 290
+G G+ + N + G I DT IT TD YLV
Sbjct: 109 KDGTGTLSVFTNEKGGIIDDTVITKVTDDHIYLV 142
>gnl|CDD|224415 COG1498, SIK1, Protein implicated in ribosomal biogenesis, Nop56p
homolog [Translation, ribosomal structure and
biogenesis].
Length = 395
Score = 28.5 bits (64), Expect = 5.8
Identities = 8/31 (25%), Positives = 21/31 (67%)
Query: 2 EEEEDEKKKKKKKKKEEEEKKQKKQKKKKKK 32
+E+ + K K +++++E+ + ++KKK+K
Sbjct: 354 KEKPPKPPTKAKPERDKKERPGRYRRKKKEK 384
Score = 28.5 bits (64), Expect = 6.0
Identities = 9/37 (24%), Positives = 22/37 (59%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNKVK 37
E+ + K K ++ K+E + +++KK+KK ++ +
Sbjct: 355 EKPPKPPTKAKPERDKKERPGRYRRKKKEKKAKSERR 391
>gnl|CDD|234767 PRK00448, polC, DNA polymerase III PolC; Validated.
Length = 1437
Score = 29.0 bits (66), Expect = 5.9
Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNKVKPVHI 41
++EEEDEK K+ + ++ + +K+K+ K K PV I
Sbjct: 178 QKEEEDEKLAKEALEA-MKKLEAEKKKQSKNFDPKEGPVQI 217
>gnl|CDD|192481 pfam10197, Cir_N, N-terminal domain of CBF1 interacting
co-repressor CIR. This is a 45 residue conserved
region at the N-terminal end of a family of proteins
referred to as CIRs (CBF1-interacting co-repressors).
CBF1 (centromere-binding factor 1) acts as a
transcription factor that causes repression by binding
specifically to GTGGGAA motifs in responsive promoters,
and it requires CIR as a co-repressor. CIR binds to
histone deacetylase and to SAP30 and serves as a linker
between CBF1 and the histone deacetylase complex.
Length = 37
Score = 25.7 bits (57), Expect = 5.9
Identities = 8/22 (36%), Positives = 16/22 (72%)
Query: 5 EDEKKKKKKKKKEEEEKKQKKQ 26
E E+K +++KK EE +K+ ++
Sbjct: 15 EAEQKALEEQKKIEELRKEIEE 36
>gnl|CDD|227474 COG5145, RAD14, DNA excision repair protein [DNA replication,
recombination, and repair].
Length = 292
Score = 28.4 bits (63), Expect = 6.0
Identities = 11/32 (34%), Positives = 23/32 (71%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKK 32
EE + EK++++K K + +EKK +K+ K+ ++
Sbjct: 211 LEELDREKQRREKMKDDRKEKKLEKKIKELRR 242
>gnl|CDD|217756 pfam03839, Sec62, Translocation protein Sec62.
Length = 217
Score = 28.2 bits (63), Expect = 6.0
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 6/39 (15%)
Query: 1 EEEEEDEKKKKKK------KKKEEEEKKQKKQKKKKKKV 33
++ E K K KK +EKK++K+K KKKKV
Sbjct: 40 DKAIEKFKLLIKAQMAERVKKLHSQEKKEEKKKPKKKKV 78
>gnl|CDD|218660 pfam05620, DUF788, Protein of unknown function (DUF788). This
family consists of several eukaryotic proteins of
unknown function.
Length = 166
Score = 28.1 bits (63), Expect = 6.0
Identities = 7/25 (28%), Positives = 14/25 (56%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKK 25
+ E + K K++E+ EK+ +K
Sbjct: 142 PSSQGAETNETKSKRQEKLEKRGEK 166
>gnl|CDD|237867 PRK14953, PRK14953, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 486
Score = 28.6 bits (64), Expect = 6.1
Identities = 11/37 (29%), Positives = 20/37 (54%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNKVK 37
E E+ KK+K+K+K+ E ++ + K K+ K
Sbjct: 444 FIEFEEVKKEKEKEKERPEFVEKVLELFKGSKIITYK 480
>gnl|CDD|179580 PRK03449, PRK03449, putative inner membrane protein translocase
component YidC; Provisional.
Length = 304
Score = 28.5 bits (64), Expect = 6.2
Identities = 10/34 (29%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Query: 2 EEEEDEKKKKKKKKKEEEEKK--QKKQKKKKKKV 33
++EE+ KK+ K +++ K K ++ KKK
Sbjct: 271 DKEEEAKKQAKAERRAANAPKPGAKPKRSKKKAP 304
>gnl|CDD|218684 pfam05672, MAP7, MAP7 (E-MAP-115) family. The organisation of
microtubules varies with the cell type and is
presumably controlled by tissue-specific
microtubule-associated proteins (MAPs). The 115-kDa
epithelial MAP (E-MAP-115/MAP7) has been identified as
a microtubule-stabilising protein predominantly
expressed in cell lines of epithelial origin. The
binding of this microtubule associated protein is
nucleotide independent.
Length = 171
Score = 28.1 bits (62), Expect = 6.2
Identities = 10/36 (27%), Positives = 24/36 (66%)
Query: 2 EEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNKVK 37
EE +++++ +++EEE ++K++K K+K + K
Sbjct: 64 AAEERLRREEEARRQEEERAREKEEKAKRKAEEEEK 99
>gnl|CDD|218581 pfam05416, Peptidase_C37, Southampton virus-type processing
peptidase. Corresponds to Merops family C37.
Norwalk-like viruses (NLVs), including the Southampton
virus, cause acute non-bacterial gastroenteritis in
humans. The NLV genome encodes three open reading frames
(ORFs). ORF1 encodes a polyprotein, which is processed
by the viral protease into six proteins.
Length = 535
Score = 28.7 bits (64), Expect = 6.2
Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 7/59 (11%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNKVKPVHIIFYRDGVSEGQFQAVMRR 59
E EE+DE + + E KK K +K + KK H F R G+S+ ++ +
Sbjct: 213 ESEEDDEGWYIEPQDATPEGKKGKNKKGRGKK-------HNAFSRRGLSDEEYDEYKKI 264
>gnl|CDD|203444 pfam06424, PRP1_N, PRP1 splicing factor, N-terminal. This domain
is specific to the N-terminal part of the prp1 splicing
factor, which is involved in mRNA splicing (and
possibly also poly(A)+ RNA nuclear export and cell
cycle progression). This domain is specific to the N
terminus of the RNA splicing factor encoded by prp1. It
is involved in mRNA splicing and possibly also
poly(A)and RNA nuclear export and cell cycle
progression.
Length = 131
Score = 27.6 bits (62), Expect = 6.3
Identities = 10/41 (24%), Positives = 25/41 (60%), Gaps = 10/41 (24%)
Query: 1 EEEEEDE----------KKKKKKKKKEEEEKKQKKQKKKKK 31
E+EE D +++KK+++++E+E+ +K +++ K
Sbjct: 59 EDEEADRIYESIDERMDERRKKRREQKEKEEIEKYREENPK 99
>gnl|CDD|153331 cd07647, F-BAR_PSTPIP, The F-BAR (FES-CIP4 Homology and
Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine
Phosphatase-Interacting Proteins. F-BAR domains are
dimerization modules that bind and bend membranes and
are found in proteins involved in membrane dynamics and
actin reorganization. Vetebrates contain two
Proline-Serine-Threonine Phosphatase-Interacting
Proteins (PSTPIPs), PSTPIP1 and PSTPIP2. PSTPIPs are
mainly expressed in hematopoietic cells and are involved
in the regulation of cell adhesion and motility.
Mutations in PSTPIPs have been shown to cause
autoinflammatory disorders. PSTPIP1 contains an
N-terminal F-BAR domain, PEST motifs, and a C-terminal
SH3 domain, while PSTPIP2 contains only the N-terminal
F-BAR domain. F-BAR domains form banana-shaped dimers
with a positively-charged concave surface that binds to
negatively-charged lipid membranes. They can induce
membrane deformation in the form of long tubules.
Length = 239
Score = 28.2 bits (63), Expect = 6.4
Identities = 16/39 (41%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Query: 3 EEEDEKKKKKKKKKEEEEKKQKKQKKKK-KKVNKVKPVH 40
EE EK+K+++KK E+ K+ +K KK+ KK K K +
Sbjct: 91 EEFREKQKEERKKTEDIMKRSQKNKKELYKKTMKAKKSY 129
>gnl|CDD|227519 COG5192, BMS1, GTP-binding protein required for 40S ribosome
biogenesis [Translation, ribosomal structure and
biogenesis].
Length = 1077
Score = 28.6 bits (63), Expect = 6.6
Identities = 8/30 (26%), Positives = 19/30 (63%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKK 30
E E ++ K+++ K+E+E++Q+ +K
Sbjct: 1033 ERMESLQRAKEEEIGKKEKEREQRIRKTIH 1062
>gnl|CDD|220231 pfam09420, Nop16, Ribosome biogenesis protein Nop16. Nop16 is a
protein involved in ribosome biogenesis.
Length = 173
Score = 27.8 bits (62), Expect = 6.6
Identities = 12/34 (35%), Positives = 20/34 (58%)
Query: 8 KKKKKKKKKEEEEKKQKKQKKKKKKVNKVKPVHI 41
KKKK + + +K+ K+K +KKK+N + I
Sbjct: 3 KKKKNRSSNYKVNRKRLKRKDRKKKINIIGNPII 36
>gnl|CDD|236048 PRK07561, PRK07561, DNA topoisomerase I subunit omega; Validated.
Length = 859
Score = 28.6 bits (65), Expect = 6.6
Identities = 8/28 (28%), Positives = 12/28 (42%)
Query: 5 EDEKKKKKKKKKEEEEKKQKKQKKKKKK 32
+D KK K + K+Q +K K
Sbjct: 830 KDPAGKKAAVKFSRKTKQQYVASEKDGK 857
>gnl|CDD|216985 pfam02349, MSG, Major surface glycoprotein. This is a novel
repeat in Pneumocystis carinii Major surface
glycoprotein (MSG) some members of the alignment have
up to nine repeats of this family, the repeats
containing several conserved cysteines. The MSG of P.
carinii is an important protein in host-pathogen
interactions. Surface glycoprotein A from Pneumocystis
carinii is a main target for the host immune system,
this protein is implicated in the attachment of
Pneumocystis carinii to the host alveolar epithelial
cells, alveolar macrophages, host surfactant and
possibly accounts in part for the hypoxia seen in
Pneumocystis carinii pneumonia (PCP).
Length = 81
Score = 26.6 bits (59), Expect = 6.7
Identities = 13/35 (37%), Positives = 21/35 (60%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNK 35
EE E K + KKKK+ ++ ++K K KK+ N+
Sbjct: 47 EELLLKELKGELKKKKKCKKALKEKCTKLKKESNE 81
>gnl|CDD|236278 PRK08506, PRK08506, replicative DNA helicase; Provisional.
Length = 472
Score = 28.4 bits (64), Expect = 6.7
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 2 EEEEDEKKKKKKKKKEEEEKKQKKQK 27
E EE EK+KK KK+ +EE + + K
Sbjct: 392 EREEKEKEKKAKKEGKEERRIHFQNK 417
>gnl|CDD|110514 pfam01517, HDV_ag, Hepatitis delta virus delta antigen. The
hepatitis delta virus (HDV) encodes a single protein,
the hepatitis delta antigen (HDAg). The central region
of this protein has been shown to bind RNA. Several
interactions are also mediated by a coiled-coil region
at the N terminus of the protein.
Length = 194
Score = 27.9 bits (62), Expect = 6.7
Identities = 15/38 (39%), Positives = 22/38 (57%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNKVKP 38
EE E+ + +KK+EE EK +K KK KK+ + P
Sbjct: 12 GREEILEQWVEARKKREELEKDLRKANKKIKKLEEENP 49
>gnl|CDD|185443 PTZ00097, PTZ00097, 60S ribosomal protein L19; Provisional.
Length = 175
Score = 27.7 bits (62), Expect = 6.8
Identities = 11/34 (32%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 3 EEEDEKKKKKKKKKEEEEKKQK-KQKKKKKKVNK 35
+ ++EK K+KK + + E ++ K K + K+K K
Sbjct: 142 KTKNEKVKEKKIQDQLEARRAKAKALRNKRKAKK 175
>gnl|CDD|238558 cd01138, FeuA, Periplasmic binding protein FeuA. These proteins
have predicted to function as initial receptors in ABC
transport of metal ions in some eubacterial species.
They belong to the TroA superfamily of periplasmic metal
binding proteins that share a distinct fold and ligand
binding mechanism. A typical TroA protein is comprised
of two globular subdomains connected by a single helix
and can bind their ligands in the cleft between these
domains.
Length = 248
Score = 28.1 bits (63), Expect = 6.9
Identities = 12/40 (30%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 8 KKKKKKKKKEEEEKKQKKQKKK-KKKVNKVKPVHIIFYRD 46
K+ + +K + ++K K+ K+K KKK+ K V ++ R
Sbjct: 112 KEDEAEKWLADYKQKAKEAKEKIKKKLGNDKSVAVLRGRK 151
>gnl|CDD|206307 pfam14138, COX16, Cytochrome c oxidase assembly protein COX16.
This family represents homologues of COX16 which has
been shown to be involved in assembly of cytochrome
oxidase. Protein in this family are typically between
106 and 134 amino acids in length.
Length = 79
Score = 26.3 bits (59), Expect = 7.0
Identities = 8/24 (33%), Positives = 17/24 (70%)
Query: 7 EKKKKKKKKKEEEEKKQKKQKKKK 30
E++ +K ++ EEEE + +K++K
Sbjct: 27 ERRDRKVQQLEEEEALKLLKKRRK 50
>gnl|CDD|215601 PLN03142, PLN03142, Probable chromatin-remodeling complex ATPase
chain; Provisional.
Length = 1033
Score = 28.6 bits (64), Expect = 7.0
Identities = 11/36 (30%), Positives = 24/36 (66%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNKV 36
E++EE E K + K E+ + ++ +K+KK+++ K+
Sbjct: 44 EDDEEAESPAKAEISKREKARLKELKKQKKQEIQKI 79
>gnl|CDD|218899 pfam06102, DUF947, Domain of unknown function (DUF947). Family of
eukaryotic proteins with unknown function.
Length = 168
Score = 27.6 bits (62), Expect = 7.1
Identities = 10/39 (25%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKK--KKKKVNKVK 37
+ ++ + + K+ KK+E+E K+ K+ KK ++ K+
Sbjct: 99 KNKDREREILKEHKKQEKELIKEGKKPYYLKKSEIKKLV 137
Score = 27.2 bits (61), Expect = 9.8
Identities = 9/26 (34%), Positives = 16/26 (61%)
Query: 11 KKKKKKEEEEKKQKKQKKKKKKVNKV 36
KK + K+ KK+ + KK K+++K
Sbjct: 129 KKSEIKKLVLKKKFDELKKSKQLDKA 154
>gnl|CDD|227352 COG5019, CDC3, Septin family protein [Cell division and chromosome
partitioning / Cytoskeleton].
Length = 373
Score = 28.4 bits (64), Expect = 7.3
Identities = 11/37 (29%), Positives = 22/37 (59%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNKVK 37
EE E +++K+ + E+ QKK + +K++ K+K
Sbjct: 333 LEELEQNLIEERKELNSKLEEIQKKLEDLEKRLEKLK 369
>gnl|CDD|220611 pfam10169, Laps, Learning-associated protein. This is a family of
121-amino acid secretory proteins. Laps functions in the
regulation of neuronal cell adhesion and/or movement and
synapse attachment. Laps binds to the ApC/EBP (Aplysia
CCAAT/enhancer binding protein) promoter and activates
the transcription of ApC/EBP mRNA.
Length = 124
Score = 27.1 bits (60), Expect = 7.3
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 8 KKKKKKKKKEEEEKKQKKQKKKKK 31
++ KK KKK E++KK+KK K
Sbjct: 101 RQAKKLKKKREKKKKKKKGAKNLA 124
>gnl|CDD|218896 pfam06098, Radial_spoke_3, Radial spoke protein 3. This family
consists of several radial spoke protein 3 (RSP3)
sequences. Eukaryotic cilia and flagella present in
diverse types of cells perform motile, sensory, and
developmental functions in organisms from protists to
humans. They are centred by precisely organised,
microtubule-based structures, the axonemes. The axoneme
consists of two central singlet microtubules, called the
central pair, and nine outer doublet microtubules. These
structures are well-conserved during evolution. The
outer doublet microtubules, each composed of A and B
sub-fibres, are connected to each other by nexin links,
while the central pair is held at the centre of the
axoneme by radial spokes. The radial spokes are T-shaped
structures extending from the A-tubule of each outer
doublet microtubule to the centre of the axoneme. Radial
spoke protein 3 (RSP3), is present at the proximal end
of the spoke stalk and helps in anchoring the radial
spoke to the outer doublet. It is thought that radial
spokes regulate the activity of inner arm dynein through
protein phosphorylation and dephosphorylation.
Length = 288
Score = 28.1 bits (63), Expect = 7.4
Identities = 10/31 (32%), Positives = 25/31 (80%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKK 31
EE E +++K+++KK+++E+KQ++++ +K
Sbjct: 179 EEAERRRREEKERRKKQDKERKQREKETAEK 209
Score = 28.1 bits (63), Expect = 8.2
Identities = 7/32 (21%), Positives = 27/32 (84%)
Query: 2 EEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKV 33
EE E ++++K+++K++++++++++K+ +K+
Sbjct: 179 EEAERRRREEKERRKKQDKERKQREKETAEKI 210
>gnl|CDD|180505 PRK06278, PRK06278, cobyrinic acid a,c-diamide synthase; Validated.
Length = 476
Score = 28.5 bits (64), Expect = 7.4
Identities = 14/40 (35%), Positives = 20/40 (50%)
Query: 3 EEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNKVKPVHII 42
E+E E+ KK K +E+ K + KK + KP II
Sbjct: 203 EDEKEEIFKKNKILKEKLKSRSGISTNNKKEERNKPKGII 242
>gnl|CDD|220600 pfam10147, CR6_interact, Growth arrest and DNA-damage-inducible
proteins-interacting protein 1. Members of this family
of proteins act as negative regulators of G1 to S cell
cycle phase progression by inhibiting cyclin-dependent
kinases. Inhibitory effects are additive with GADD45
proteins but occur also in the absence of GADD45
proteins. Furthermore, they act as a repressor of the
orphan nuclear receptor NR4A1 by inhibiting AB
domain-mediated transcriptional activity.
Length = 217
Score = 27.9 bits (62), Expect = 7.4
Identities = 10/27 (37%), Positives = 21/27 (77%)
Query: 6 DEKKKKKKKKKEEEEKKQKKQKKKKKK 32
D + ++ ++KE+EEKK+ K+ K+++K
Sbjct: 177 DPRFQEMLQQKEKEEKKKVKEAKRREK 203
Score = 27.9 bits (62), Expect = 7.9
Identities = 10/29 (34%), Positives = 20/29 (68%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKK 29
++E+E++KK K+ K++E+EEK+
Sbjct: 186 QKEKEEKKKVKEAKRREKEEKRMAALVAA 214
Score = 27.5 bits (61), Expect = 9.7
Identities = 10/26 (38%), Positives = 22/26 (84%)
Query: 3 EEEDEKKKKKKKKKEEEEKKQKKQKK 28
+E ++K+K++KKK +E K+++K++K
Sbjct: 181 QEMLQQKEKEEKKKVKEAKRREKEEK 206
>gnl|CDD|235505 PRK05563, PRK05563, DNA polymerase III subunits gamma and tau;
Validated.
Length = 559
Score = 28.3 bits (64), Expect = 7.5
Identities = 11/35 (31%), Positives = 21/35 (60%)
Query: 7 EKKKKKKKKKEEEEKKQKKQKKKKKKVNKVKPVHI 41
+ +++E++K++KK KKKK KV + K +
Sbjct: 390 AQPVGVAPEQKEKKKEKKKNKKKKYKVPRGKIYKV 424
>gnl|CDD|114011 pfam05262, Borrelia_P83, Borrelia P83/100 protein. This family
consists of several Borrelia P83/P100 antigen proteins.
Length = 489
Score = 28.4 bits (63), Expect = 7.6
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNKVKPVHIIFYRDGVSEGQFQA 55
+E E E K+ ++ KEE +KKQ K ++K + + RD V + Q +A
Sbjct: 204 KERESQEDAKRAQQLKEELDKKQIDADKAQQKADF-AQDNADKQRDEVRQKQQEA 257
>gnl|CDD|220369 pfam09731, Mitofilin, Mitochondrial inner membrane protein.
Mitofilin controls mitochondrial cristae morphology.
Mitofilin is enriched in the narrow space between the
inner boundary and the outer membranes, where it forms a
homotypic interaction and assembles into a large
multimeric protein complex. The first 78 amino acids
contain a typical amino-terminal-cleavable mitochondrial
presequence rich in positive-charged and hydroxylated
residues and a membrane anchor domain. In addition, it
has three centrally located coiled coil domains.
Length = 493
Score = 28.5 bits (64), Expect = 7.7
Identities = 9/35 (25%), Positives = 20/35 (57%)
Query: 3 EEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNKVK 37
EEE+E ++ K+K+EE K +++ + + +
Sbjct: 185 EEEEELERALKEKREELLSKLEEELLARLESKEAA 219
>gnl|CDD|221937 pfam13148, DUF3987, Protein of unknown function (DUF3987). A
family of uncharacterized proteins found by clustering
human gut metagenomic sequences.
Length = 379
Score = 28.4 bits (64), Expect = 7.9
Identities = 13/38 (34%), Positives = 20/38 (52%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNKVKP 38
EE EE+ K+ + +K+ E EKK ++K KK
Sbjct: 72 EEYEEELKEYEAEKEIWEAEKKGLEKKAKKAIKKGKDE 109
>gnl|CDD|221533 pfam12329, TMF_DNA_bd, TATA element modulatory factor 1 DNA
binding. This is the middle region of a family of TATA
element modulatory factor 1 proteins conserved in
eukaryotes that contains at its N-terminal section a
number of leucine zippers that could potentially form
coiled coil structures. The whole proteins bind to the
TATA element of some RNA polymerase II promoters and
repress their activity. by competing with the binding
of TATA binding protein. TMFs are evolutionarily
conserved golgins that bind Rab6, a ubiquitous ras-like
GTP-binding Golgi protein, and contribute to Golgi
organisation in animal and plant cells.
Length = 74
Score = 26.1 bits (58), Expect = 8.1
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 10 KKKKKKKEEEEKKQKKQKKKKKKVNK 35
KK + K +E EK+ + KKK +K+ K
Sbjct: 36 KKLRAKNKELEKEIAELKKKLEKLEK 61
>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication,
recombination, and repair].
Length = 908
Score = 28.6 bits (64), Expect = 8.1
Identities = 11/37 (29%), Positives = 25/37 (67%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNKVK 37
E +E E+ + + +KEE E+ +++ K+ KKK+ +++
Sbjct: 570 ELKELLEELRLLRTRKEELEELRERLKELKKKLKELE 606
>gnl|CDD|197700 smart00398, HMG, high mobility group.
Length = 70
Score = 26.1 bits (58), Expect = 8.1
Identities = 4/29 (13%), Positives = 18/29 (62%)
Query: 3 EEEDEKKKKKKKKKEEEEKKQKKQKKKKK 31
+E+K ++K ++++++ +++ + K
Sbjct: 42 LLSEEEKAPYEEKAKKDKERYEEEMPEYK 70
>gnl|CDD|221473 pfam12230, PRP21_like_P, Pre-mRNA splicing factor PRP21 like
protein. This domain family is found in eukaryotes,
and is typically between 212 and 238 amino acids in
length. The family is found in association with
pfam01805. There are two completely conserved residues
(W and H) that may be functionally important. PRP21 is
required for assembly of the prespliceosome and it
interacts with U2 snRNP and/or pre-mRNA in the
prespliceosome. This family also contains proteins
similar to PRP21, such as the mammalian SF3a. SF3a also
interacts with U2 snRNP from the prespliceosome,
converting it to its active form.
Length = 230
Score = 27.8 bits (62), Expect = 8.1
Identities = 9/24 (37%), Positives = 19/24 (79%)
Query: 4 EEDEKKKKKKKKKEEEEKKQKKQK 27
E ++ +KK+++KKEEEE++++
Sbjct: 28 EWEKHQKKEEQKKEEEEEEERIAF 51
>gnl|CDD|216833 pfam01991, vATP-synt_E, ATP synthase (E/31 kDa) subunit. This
family includes the vacuolar ATP synthase E subunit, as
well as the archaebacterial ATP synthase E subunit.
Length = 195
Score = 27.7 bits (62), Expect = 8.2
Identities = 12/31 (38%), Positives = 20/31 (64%)
Query: 2 EEEEDEKKKKKKKKKEEEEKKQKKQKKKKKK 32
E E+E + +K + EE EKK ++ +KK+K
Sbjct: 15 AEAEEEFEIEKAEAVEEAEKKIEEIYEKKEK 45
>gnl|CDD|236944 PRK11642, PRK11642, exoribonuclease R; Provisional.
Length = 813
Score = 28.6 bits (64), Expect = 8.2
Identities = 11/37 (29%), Positives = 17/37 (45%), Gaps = 5/37 (13%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQK-----KQKKKKKK 32
++ + KK +K K+ K QK K K+ KK
Sbjct: 773 KKAKPKAAKKDARKAKKPSAKTQKIAAATKAKRAAKK 809
>gnl|CDD|221952 pfam13166, AAA_13, AAA domain. This family of domains contain a
P-loop motif that is characteristic of the AAA
superfamily. Many of the proteins in this family are
conjugative transfer proteins. This family includes the
PrrC protein that is thought to be the active component
of the anticodon nuclease.
Length = 713
Score = 28.4 bits (64), Expect = 8.5
Identities = 12/36 (33%), Positives = 23/36 (63%)
Query: 2 EEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNKVK 37
EE + E KK ++K ++ E + +KK+++ +K NK
Sbjct: 98 EELKKELKKLEEKIEQLEAEIEKKEEELEKAKNKFL 133
>gnl|CDD|222812 PHA00727, PHA00727, hypothetical protein.
Length = 278
Score = 27.9 bits (62), Expect = 8.7
Identities = 14/34 (41%), Positives = 22/34 (64%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVN 34
E+ E + KK++ ++ K E KK+KK KK+K V
Sbjct: 48 EKREFELKKQQFEQLKAELSKKKKKFKKEKVDVR 81
>gnl|CDD|221805 pfam12848, ABC_tran_2, ABC transporter. This domain is related
to pfam00005.
Length = 85
Score = 26.4 bits (59), Expect = 8.7
Identities = 9/23 (39%), Positives = 19/23 (82%)
Query: 10 KKKKKKKEEEEKKQKKQKKKKKK 32
++K+++ E++EK +KQ+K+ KK
Sbjct: 20 EQKEERLEQQEKAYEKQQKEIKK 42
>gnl|CDD|191968 pfam08213, DUF1713, Mitochondrial domain of unknown function
(DUF1713). This domain is found at the C terminal end
of mitochondrial proteins of unknown function.
Length = 34
Score = 25.0 bits (55), Expect = 8.8
Identities = 8/28 (28%), Positives = 21/28 (75%)
Query: 8 KKKKKKKKKEEEEKKQKKQKKKKKKVNK 35
+K+++K KK + +K +K+ + ++K++K
Sbjct: 7 RKRRRKMKKHKYKKLRKRTRALRRKLDK 34
>gnl|CDD|232985 TIGR00463, gltX_arch, glutamyl-tRNA synthetase, archaeal and
eukaryotic family. The glutamyl-tRNA synthetases of the
eukaryotic cytosol and of the Archaea are more similar
to glutaminyl-tRNA synthetases than to bacterial
glutamyl-tRNA synthetases. This model models just the
eukaryotic cytosolic and archaeal forms of the enzyme.
In some eukaryotes, the glutamyl-tRNA synthetase is part
of a longer, multifunctional aminoacyl-tRNA ligase. In
many species, the charging of tRNA(gln) proceeds first
through misacylation with Glu and then transamidation.
For this reason, glutamyl-tRNA synthetases, including
all known archaeal enzymes (as of 2010) may act on both
tRNA(gln) and tRNA(glu) [Protein synthesis, tRNA
aminoacylation].
Length = 556
Score = 28.2 bits (63), Expect = 8.9
Identities = 15/62 (24%), Positives = 28/62 (45%), Gaps = 13/62 (20%)
Query: 5 EDEKKKKKKKKKEEEEKKQKKQKK-------KKKKV------NKVKPVHIIFYRDGVSEG 51
+E+K+ K+ + +KK+KK+K K +V N P+HI R +
Sbjct: 59 PEEQKELMKRLGLDIKKKEKKRKGLRELPGAKMGEVVMRFAPNPSGPLHIGHARAAILNH 118
Query: 52 QF 53
++
Sbjct: 119 EY 120
>gnl|CDD|221177 pfam11708, Slu7, Pre-mRNA splicing Prp18-interacting factor. The
spliceosome, an assembly of snRNAs (U1, U2, U4/U6, and
U5) and proteins, catalyzes the excision of introns from
pre-mRNAs in two successive trans-esterification
reactions. Step 2 depends upon integral spliceosome
constituents such as U5 snRNA and Prp8 and
non-spliceosomal proteins Prp16, Slu7, Prp18, and Prp22.
ATP hydrolysis by the DEAH-box enzyme Prp16 promotes a
conformational change in the spliceosome that leads to
protection of the 3'ss from targeted RNase H cleavage.
This change, which probably reflects binding of the 3'ss
PyAG in the catalytic centre of the spliceosome,
requires the ordered recruitment of Slu7, Prp18, and
Prp22 to the spliceosome. There is a close functional
relationship between Prp8, Prp18, and Slu7, and Prp18
interacts with Slu7, so that together they recruit Prp22
to the spliceosome. Most members of the family carry a
zinc-finger of the CCHC-type upstream of this domain.
Length = 236
Score = 27.8 bits (62), Expect = 9.1
Identities = 10/24 (41%), Positives = 17/24 (70%)
Query: 12 KKKKKEEEEKKQKKQKKKKKKVNK 35
+KKE+E+K+Q K +KK+ + K
Sbjct: 160 LLRKKEKEKKEQLKIQKKQSLLEK 183
>gnl|CDD|222592 pfam14204, Ribosomal_L18_c, Ribosomal L18 C-terminal region.
This domain is the C-terminal end of ribosomal L18/L5
proteins.
Length = 93
Score = 26.4 bits (59), Expect = 9.2
Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 5/34 (14%)
Query: 5 EDEKKKKKKKKKEEEEKKQKKQKK-----KKKKV 33
D +KKK+KK+ + E K+ KK +K +V
Sbjct: 57 ADPSRKKKEKKEVKAESKRYNAKKLTLEQRKARV 90
>gnl|CDD|129272 TIGR00168, infC, translation initiation factor IF-3. infC uses
abnormal initiation codons such as AUA, AUC, and CUG
which render its expression particularly sensitive to
excess of its gene product IF-3 thereby regulating its
own expression [Protein synthesis, Translation
factors].
Length = 165
Score = 27.4 bits (61), Expect = 9.5
Identities = 13/36 (36%), Positives = 22/36 (61%), Gaps = 3/36 (8%)
Query: 19 EEKKQKKQKKKKKKVNKVKPVHIIFYRDGVSEGQFQ 54
E++K+KK+ KK +K+ +VK V + R + E Q
Sbjct: 62 EQEKKKKEAKKNQKIIQVKEVKM---RPTIDEHDLQ 94
>gnl|CDD|236408 PRK09200, PRK09200, preprotein translocase subunit SecA; Reviewed.
Length = 790
Score = 28.0 bits (63), Expect = 9.6
Identities = 12/33 (36%), Positives = 14/33 (42%)
Query: 4 EEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNKV 36
EE EK KKK K + +K K V K
Sbjct: 551 EELEKLKKKLKTDAQRLTGLLFNRKVHKIVVKA 583
>gnl|CDD|150786 pfam10153, DUF2361, Uncharacterized conserved protein (DUF2361).
This is a region of 120 amino acids that is conserved
in a family of proteins found from plants to fungi. The
function is not known.
Length = 114
Score = 26.8 bits (60), Expect = 9.6
Identities = 12/34 (35%), Positives = 22/34 (64%)
Query: 4 EEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNKVK 37
E E+ + KK+ E+ +++KK+KK KK + V+
Sbjct: 24 VEKERALEALKKELEDAERRKKRKKMAKKYHMVR 57
>gnl|CDD|115072 pfam06391, MAT1, CDK-activating kinase assembly factor MAT1. MAT1
is an assembly/targeting factor for cyclin-dependent
kinase-activating kinase (CAK), which interacts with the
transcription factor TFIIH. The domain found to the
N-terminal side of this domain is a C3HC4 RING finger.
Length = 200
Score = 27.4 bits (61), Expect = 9.8
Identities = 13/31 (41%), Positives = 22/31 (70%)
Query: 2 EEEEDEKKKKKKKKKEEEEKKQKKQKKKKKK 32
EEE E K++K+ ++EE++QK K+K K+
Sbjct: 99 LEEEKEMKEEKRLHLQKEEQEQKMAKEKDKQ 129
>gnl|CDD|202096 pfam02029, Caldesmon, Caldesmon.
Length = 431
Score = 28.1 bits (62), Expect = 9.8
Identities = 12/34 (35%), Positives = 25/34 (73%), Gaps = 1/34 (2%)
Query: 1 EEEEEDEKKKKKKKKKE-EEEKKQKKQKKKKKKV 33
E E+ KKK+++++K EEE++++KQ++ +K
Sbjct: 213 ALELEELKKKREERRKVLEEEEQRRKQEEADRKS 246
>gnl|CDD|219882 pfam08524, rRNA_processing, rRNA processing. This is a family of
proteins that are involved in rRNA processing. In a
localisation study they were found to localise to the
nucleus and nucleolus. The family also includes other
metazoa members from plants to mammals where the protein
has been named BR22 and is associated with TTF-1,
thyroid transcription factor 1. In the lungs, the family
binds TTF-1 to form a complex which influences the
expression of the key lung surfactant protein-B (SP-B)
and -C (SP-C), the small hydrophobic surfactant proteins
that maintain surface tension in alveoli.
Length = 150
Score = 27.2 bits (60), Expect = 9.9
Identities = 13/35 (37%), Positives = 27/35 (77%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNK 35
+ E+E K++K+ +K E +KKQK++++++KK+ K
Sbjct: 88 QREKELAKRQKELEKIELSKKKQKERERRRKKLTK 122
>gnl|CDD|235549 PRK05658, PRK05658, RNA polymerase sigma factor RpoD; Validated.
Length = 619
Score = 28.2 bits (64), Expect = 9.9
Identities = 13/42 (30%), Positives = 19/42 (45%), Gaps = 9/42 (21%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQK---------KQKKKKKKV 33
E+EEE+E + +E E +K KQ KK +K
Sbjct: 196 EDEEEEEDENDDSLAADESELPEKVLEKFKALAKQYKKLRKA 237
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.317 0.133 0.392
Gapped
Lambda K H
0.267 0.0717 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 19,518,219
Number of extensions: 1863121
Number of successful extensions: 12575
Number of sequences better than 10.0: 1
Number of HSP's gapped: 10072
Number of HSP's successfully gapped: 1090
Length of query: 387
Length of database: 10,937,602
Length adjustment: 99
Effective length of query: 288
Effective length of database: 6,546,556
Effective search space: 1885408128
Effective search space used: 1885408128
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (26.9 bits)