RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6533
(387 letters)
>4f3t_A Protein argonaute-2; hydrolase/gene regulation, RNAI, slicer,
hydrolase-RNA; 2.25A {Homo sapiens} PDB: 4ei1_A 4ei3_A*
1r4k_A 1si2_A 1si3_A
Length = 861
Score = 230 bits (586), Expect = 3e-68
Identities = 103/208 (49%), Positives = 129/208 (62%), Gaps = 21/208 (10%)
Query: 195 NKVKPVHIIFYRDGVSEGQFQAVMSAEISAIKRACQGVEANYNPKVTFLVVQKRHHTRFF 254
+ KP IIFYRDGVSEGQFQ V+ E+ AI+ AC +E +Y P +TF+VVQKRHHTR F
Sbjct: 659 TRFKPTRIIFYRDGVSEGQFQQVLHHELLAIREACIKLEKDYQPGITFIVVQKRHHTRLF 718
Query: 255 PTSPSEGDGSRNNNVRPGTIVDTTITHPTDLDFYLVSHQSIQGTARPTKYYRLWDEYNLT 314
T +E G ++ N+ GT VDT ITHPT+ DFYL SH IQGT+RP+ Y+ LWD+ +
Sbjct: 719 CTDKNERVG-KSGNIPAGTTVDTKITHPTEFDFYLCSHAGIQGTSRPSHYHVLWDDNRFS 777
Query: 315 DDETEEMTYYLCHLFSRCTRSVSYPAPTYYAHLAAFRGRVYIKNRHLDMNN--------- 365
DE + +TY LCH + RCTRSVS PAP YYAHL AFR R ++ ++ D
Sbjct: 778 SDELQILTYQLCHTYVRCTRSVSIPAPAYYAHLVAFRARYHLVDKEHDSAEGSHTSGQSN 837
Query: 366 ------LPRENQVHQANAEFLTNNPMYF 387
L + QVHQ T MYF
Sbjct: 838 GRDHQALAKAVQVHQD-----TLRTMYF 860
Score = 127 bits (321), Expect = 2e-32
Identities = 60/128 (46%), Positives = 74/128 (57%), Gaps = 21/128 (16%)
Query: 28 KKKKKVNKVKPVHIIFYRDGVSEGQFQAVMRRCGPCSNRSVAGLSYTIFTGAEISAIKRA 87
+ K + KP IIFYRDGVSEGQFQ V+ E+ AI+ A
Sbjct: 653 IQFYKSTRFKPTRIIFYRDGVSEGQFQQVLHH--------------------ELLAIREA 692
Query: 88 CQGVEANYNPKVTFLVVQKRHHTRFFPTSPSEGDGSRNNNVRPGTIVDTTITHPTDLDFY 147
C +E +Y P +TF+VVQKRHHTR F T +E G ++ N+ GT VDT ITHPT+ DFY
Sbjct: 693 CIKLEKDYQPGITFIVVQKRHHTRLFCTDKNERVG-KSGNIPAGTTVDTKITHPTEFDFY 751
Query: 148 LVSHQSIQ 155
L SH IQ
Sbjct: 752 LCSHAGIQ 759
Score = 55.2 bits (132), Expect = 2e-08
Identities = 17/43 (39%), Positives = 26/43 (60%)
Query: 154 IQVGILTQCIKEKTVFKMNPATTGNILLKINAKLNGINHYVNK 196
+G+ TQC++ K V + P T N+ LKIN KL G+N+ +
Sbjct: 540 TVLGMATQCVQMKNVQRTTPQTLSNLCLKINVKLGGVNNILLP 582
>2yhb_A QDE-2, post-transcriptional gene silencing protein QDE-2; RNA
binding protein, argonaute, miRNA, siRNA; 3.65A
{Neurospora crassa}
Length = 437
Score = 215 bits (549), Expect = 3e-66
Identities = 76/215 (35%), Positives = 110/215 (51%), Gaps = 24/215 (11%)
Query: 191 NHYVNKVKPVHIIFYRDGVSEGQFQAVMSAEISAIKRACQGV-EANYNPKVTFLVVQKRH 249
N N+ P +I+ +RDGVSEGQFQ V+ E+ ++ AC+ V A P++T +V KRH
Sbjct: 228 NPANNRSLPENILIFRDGVSEGQFQMVIKDELPLVRAACKLVYPAGKLPRITLIVSVKRH 287
Query: 250 HTRFFPTSPSEGDGSRNNNVRPGTIVDTTITHPTDLDFYLVSHQSIQGTARPTKYYRLWD 309
TRFFPT P ++ + + GT+VD +T+ DF+L +H S+QGTAR Y L D
Sbjct: 288 QTRFFPTDPKHIH-FKSKSPKEGTVVDRGVTNVRYWDFFLQAHASLQGTARSAHYTVLVD 346
Query: 310 EY------NLTDDETEEMTYYLCHLFSRCTRSVSYPAPTYYAHLAAFRGRVYIKNRHLDM 363
E N D E++T+ +C+LF R T++VS P YYA L R R++ K +
Sbjct: 347 EIFRADYGNKAADTLEQLTHDMCYLFGRATKAVSICPPAYYADLVCDRARIHQKELFDAL 406
Query: 364 NN-----------LPRENQVHQANAEFLTNNPMYF 387
+ VH N MY+
Sbjct: 407 DENDSVKTDDFARWGNSGAVHPN-----LRNSMYY 436
Score = 110 bits (277), Expect = 3e-27
Identities = 44/140 (31%), Positives = 72/140 (51%), Gaps = 22/140 (15%)
Query: 17 EEEEKKQKKQKKKKKKVNKVKPVHIIFYRDGVSEGQFQAVMRRCGPCSNRSVAGLSYTIF 76
++ K + + + N+ P +I+ +RDGVSEGQFQ V++
Sbjct: 215 TDKFKTRLELWRSNPANNRSLPENILIFRDGVSEGQFQMVIKD----------------- 257
Query: 77 TGAEISAIKRACQGV-EANYNPKVTFLVVQKRHHTRFFPTSPSEGDGSRNNNVRPGTIVD 135
E+ ++ AC+ V A P++T +V KRH TRFFPT P ++ + + GT+VD
Sbjct: 258 ---ELPLVRAACKLVYPAGKLPRITLIVSVKRHQTRFFPTDPKHIH-FKSKSPKEGTVVD 313
Query: 136 TTITHPTDLDFYLVSHQSIQ 155
+T+ DF+L +H S+Q
Sbjct: 314 RGVTNVRYWDFFLQAHASLQ 333
Score = 50.9 bits (121), Expect = 3e-07
Identities = 12/44 (27%), Positives = 17/44 (38%), Gaps = 2/44 (4%)
Query: 154 IQVGILTQCIKEKTVFKM--NPATTGNILLKINAKLNGINHYVN 195
I G+ T C + N+ LK+N K G NH +
Sbjct: 103 ITFGVHTVCCVAEKFLSTKGQLGYFANVGLKVNLKFGGTNHNIK 146
>4f1n_A Kpago; argonaute, RNAI, RNAse H, RNA binding protein-RNA complex;
3.19A {Vanderwaltozyma polyspora}
Length = 1046
Score = 205 bits (522), Expect = 6e-59
Identities = 70/217 (32%), Positives = 100/217 (46%), Gaps = 24/217 (11%)
Query: 195 NKVKPVHIIFYRDGVSEGQFQAVMSAEISAIKRACQGVEA------NYNPKVTFLVVQKR 248
N P I+++RDGVS QF V+ E+ +IK + + Y+P VT + KR
Sbjct: 829 NGKLPTKIMYFRDGVSVDQFSQVVKIEVKSIKESVRKFGPQLNGGNKYDPPVTCIATVKR 888
Query: 249 HHTRFFPTSPSEGDG-------SRNNNVRPGTIVDTTITHPTDLDFYLVSHQSIQGTARP 301
+ RF P + + NV PGT+VD IT DF++ SHQ+++GT P
Sbjct: 889 NQVRFIPIQENAKNEKGEEVAVQSMGNVMPGTVVDRGITSVAHFDFFIQSHQALKGTGVP 948
Query: 302 TKYYRLWDEYNLTDDETEEMTYYLCHLFSRCTRSVSYPAPTYYAHLAAFRGRVYIK-NRH 360
Y+ L+DE T D +E+ LC++F R T SV PAP YYA L R + K
Sbjct: 949 CHYWCLYDENQSTSDYLQEICNNLCYIFGRSTTSVKVPAPVYYADLLCTRATCFFKAGFE 1008
Query: 361 LDMNNLP-----RENQVHQANAEFLTNNP-----MYF 387
L+M P ++ N N MY+
Sbjct: 1009 LNMAQAPKEKGSKDQPTVSKNVLLPQVNDNIKSVMYY 1045
Score = 102 bits (254), Expect = 1e-23
Identities = 39/142 (27%), Positives = 60/142 (42%), Gaps = 33/142 (23%)
Query: 27 KKKKKKVNKVKPVHIIFYRDGVSEGQFQAVMRRCGPCSNRSVAGLSYTIFTGAEISAIKR 86
K +K N P I+++RDGVS QF V++ E+ +IK
Sbjct: 822 KIYQKHNNGKLPTKIMYFRDGVSVDQFSQVVKI--------------------EVKSIKE 861
Query: 87 ACQGVEA------NYNPKVTFLVVQKRHHTRFFPTSPSEGDG-------SRNNNVRPGTI 133
+ + Y+P VT + KR+ RF P + + NV PGT+
Sbjct: 862 SVRKFGPQLNGGNKYDPPVTCIATVKRNQVRFIPIQENAKNEKGEEVAVQSMGNVMPGTV 921
Query: 134 VDTTITHPTDLDFYLVSHQSIQ 155
VD IT DF++ SHQ+++
Sbjct: 922 VDRGITSVAHFDFFIQSHQALK 943
Score = 54.3 bits (129), Expect = 4e-08
Identities = 12/42 (28%), Positives = 22/42 (52%)
Query: 154 IQVGILTQCIKEKTVFKMNPATTGNILLKINAKLNGINHYVN 195
++ G L C+ K + N+++K+N KL G NH ++
Sbjct: 706 LKFGALNSCVVWDNFKKNSIQYNSNVVMKMNLKLLGSNHSLS 747
>1yvu_A Hypothetical protein AQ_1447; RNAse H fold, RNA binding protein,
gene regulation; 2.90A {Aquifex aeolicus} SCOP:
b.34.14.1 c.55.3.10 PDB: 2f8s_A 2f8t_A 2nub_A
Length = 706
Score = 152 bits (385), Expect = 5e-41
Identities = 27/172 (15%), Positives = 58/172 (33%), Gaps = 27/172 (15%)
Query: 195 NKVKPVHIIFYRDGVSEGQFQAVMSAEISAIKRACQGVEANYNPKVTFLVVQKRHHTRFF 254
K I+ +RDG E++A K+ + Y + L + KR++ RFF
Sbjct: 559 GFKKGSKIVVHRDGRLYRD-------EVAAFKKYGE----LYGYSLELLEIIKRNNPRFF 607
Query: 255 PTSPSEGDGSRNNNVRPGTIVDTTITHPTDLDFYLVSHQSIQGTARPTKYYRLWDEYNLT 314
+ + ++ T +Q +GT +P K +++ E +
Sbjct: 608 SNEK-------FIKGYFYKLSEDSVILAT-------YNQVYEGTHQPIKVRKVYGELPV- 652
Query: 315 DDETEEMTYYLCHLFSRCTRSVSYPAPTYYAHLAAFRGRVYIKNRHLDMNNL 366
+ L + + + PA +Y+ I+ + + +
Sbjct: 653 -EVLCSQILSLTLMNYSSFQPIKLPATVHYSDKITKLMLRGIEPIKKEGDIM 703
Score = 66.7 bits (162), Expect = 4e-12
Identities = 20/134 (14%), Positives = 38/134 (28%), Gaps = 38/134 (28%)
Query: 14 KKKEEEEKKQKKQKKKKKKVNKVKPVHIIFYRDGVSEGQFQAVMRRCGPCSNRSVAGLSY 73
++ EK +K+ K I+ +RDG
Sbjct: 539 FGEKLTEKAIGDVFSLLEKLGFKKGSKIVVHRDGRLYRD--------------------- 577
Query: 74 TIFTGAEISAIKRACQGVEANYNPKVTFLVVQKRHHTRFFPTSPSEGDGSRNNNVRPGTI 133
E++A K+ + Y + L + KR++ RFF +
Sbjct: 578 ------EVAAFKKYGE----LYGYSLELLEIIKRNNPRFFSNEK-------FIKGYFYKL 620
Query: 134 VDTTITHPTDLDFY 147
+ ++ T Y
Sbjct: 621 SEDSVILATYNQVY 634
>3ho1_A Argonaute; argonaute, protein-DNA-RNA complex, nucleic acid binding
Pro RNA complex; 2.60A {Thermus thermophilus} PDB:
3dlb_A* 3dlh_A* 3f73_A* 3hm9_A 3hvr_A 3hxm_A* 3hk2_A
3hjf_A
Length = 685
Score = 139 bits (351), Expect = 2e-36
Identities = 39/274 (14%), Positives = 72/274 (26%), Gaps = 76/274 (27%)
Query: 154 IQVGILTQCIKEKTVFKMNPATTGNILLKINAKLNGINHYVNKVKPVHII---------- 203
++ G+ +Q + + N LL + AK ++ P +
Sbjct: 426 LREGLPSQILNVPL-REEERHRWENALLGLLAKAGLQVVALSGAYPAELAVGFDAGGRES 484
Query: 204 ---------------FYRDGVSEGQFQAVMSAEI--SAIKRACQG--------------- 231
+ E Q + E+ ++
Sbjct: 485 FRFGGAACAVGGDGGHLLWTLPEAQAGERIPQEVVWDLLEETLWAFRRKAGRLPSRVLLL 544
Query: 232 -------------VEANYNP--KVTFLVVQKRHHTRFFPTSPSEGDGSRNNNVRPGTIVD 276
+EA + V+K R +P + G V
Sbjct: 545 RNGRVPQDEFALALEALAREGIAYDLVSVRKSGGGRVYPV---------QGRLADGLYVP 595
Query: 277 TTITHPTDLDFYLVSHQSIQGTARPTKYYRLWDEYNLTDDETEEMTYYLCHL-FSRCTRS 335
L H+ +GT RP K + L + ++L L +
Sbjct: 596 ----LEDKTFLLLTVHRDFRGTPRPLKLVHEAGDTPL--EALAHQIFHLTRLYPASGFAF 649
Query: 336 VSYPAPTYYAH-LAAFRGRVYIKN-RHLDMNNLP 367
PAP + A L GR+ I++ + +D L
Sbjct: 650 PRLPAPLHLADRLVKEVGRLGIRHLKEVDREKLF 683
Score = 68.1 bits (166), Expect = 1e-12
Identities = 13/125 (10%), Positives = 25/125 (20%), Gaps = 44/125 (35%)
Query: 31 KKVNKVKPVHIIFYRDGVSEGQFQAVMRRCGPCSNRSVAGLSYTIFTGAEISAIKRACQG 90
++ P ++ R+G E + A
Sbjct: 531 RRKAGRLPSRVLLLRNGR---------------------------VPQDEFALALEALA- 562
Query: 91 VEANYNPKVTFLVVQKRHHTRFFPTSPSEGDGSRNNNVRPGTIVDTTITHPTDLDFYLVS 150
+ V+K R +P + G V L
Sbjct: 563 ---REGIAYDLVSVRKSGGGRVYPV---------QGRLADGLYVP----LEDKTFLLLTV 606
Query: 151 HQSIQ 155
H+ +
Sbjct: 607 HRDFR 611
>2yha_A Post-transcriptional gene silencing protein QDE-2; RNA binding
protein, argonaute, miRNA, siRNA; HET: GOL; 1.85A
{Neurospora crassa} PDB: 2xdy_A
Length = 388
Score = 132 bits (332), Expect = 4e-35
Identities = 51/209 (24%), Positives = 78/209 (37%), Gaps = 61/209 (29%)
Query: 191 NHYVNKVKPVHIIFYRDGVSEGQFQAVMSAEISAIKRACQGV-EANYNPKVTFLVVQKRH 249
N N+ P +I+ +RDGVSEGQFQ V+ E+ ++ AC+ V A P++T +V K
Sbjct: 228 NPANNRSLPENILIFRDGVSEGQFQMVIKDELPLVRAACKLVYPAGKLPRITLIVSVKGS 287
Query: 250 HTRFFPTSPSEGDGSRNNNVRPGTIVDTTITHPTDLDFYLVSHQSIQGTARPTKYYRLWD 309
+ + +VD D
Sbjct: 288 GSAHY-----------------TVLVDEIFRA---------------------------D 303
Query: 310 EYNLTDDETEEMTYYLCHLFSRCTRSVSYPAPTYYAHLAAFRGRVYIKNRHLDMNN---- 365
N D E++T+ +C+LF R T++VS P YYA L R R++ K ++
Sbjct: 304 YGNKAADTLEQLTHDMCYLFGRATKAVSICPPAYYADLVCDRARIHQKELFDALDENDSV 363
Query: 366 -------LPRENQVHQANAEFLTNNPMYF 387
VH N MY+
Sbjct: 364 KTDDFARWGNSGAVHPN-----LRNSMYY 387
Score = 70.9 bits (173), Expect = 1e-13
Identities = 28/122 (22%), Positives = 50/122 (40%), Gaps = 21/122 (17%)
Query: 17 EEEEKKQKKQKKKKKKVNKVKPVHIIFYRDGVSEGQFQAVMRRCGPCSNRSVAGLSYTIF 76
++ K + + + N+ P +I+ +RDGVSEGQFQ V++
Sbjct: 215 TDKFKTRLELWRSNPANNRSLPENILIFRDGVSEGQFQMVIKD----------------- 257
Query: 77 TGAEISAIKRACQGV-EANYNPKVTFLVVQKRHHTRFFPTSPSEGDGSRNNNVRPGTIVD 135
E+ ++ AC+ V A P++T +V K + + E + N T+
Sbjct: 258 ---ELPLVRAACKLVYPAGKLPRITLIVSVKGSGSAHYTVLVDEIFRADYGNKAADTLEQ 314
Query: 136 TT 137
T
Sbjct: 315 LT 316
>1u04_A Argonaute, hypothetical protein PF0537; RNAI, silencing, PIWI, PAZ,
RISC, slicer, RNAse H hydrolase-gene regulation complex;
2.25A {Pyrococcus furiosus} SCOP: b.34.14.1 c.55.3.10
PDB: 1z25_A 1z26_A
Length = 771
Score = 131 bits (330), Expect = 1e-33
Identities = 27/176 (15%), Positives = 54/176 (30%), Gaps = 25/176 (14%)
Query: 193 YVNKVKPVHIIFYRDGVSEGQFQAVMSAEISAIKRACQGVEANYNPKVTFLVVQKRHHTR 252
+ K+ I+ RDG + + E +K + ++ +V + V K H R
Sbjct: 615 FNIKLDNKKILLLRDGR-------ITNNEEEGLKYISE----MFDIEVVTMDVIKNHPVR 663
Query: 253 FFPTSPSEGDGSRNNNVRPGTIVDTTITHPTDLDFYLVSHQSIQGTARPTKYYRLWDEYN 312
F + G P L + I+ + ++ +
Sbjct: 664 AFA--------NMKMYFNLG---GAIYLIPHKLKQAKGTPIPIKLAKKRIIKNGKVEKQS 712
Query: 313 LTDDETEEMTYYLCHL-FSRCTRSVSYPAPTYYAHLAAFR-GRVYIKNRHLDMNNL 366
+T + + + L L + + + PAP +YAH A +
Sbjct: 713 ITRQDVLD-IFILTRLNYGSISADMRLPAPVHYAHKFANAIRNEWKIKEEFLAEGF 767
Score = 73.7 bits (180), Expect = 3e-14
Identities = 21/147 (14%), Positives = 40/147 (27%), Gaps = 42/147 (28%)
Query: 11 KKKKKKEEEEKKQKKQKKKKKKVNKVKPVHIIFYRDGVSEGQFQAVMRRCGPCSNRSVAG 70
++ + + E ++ K K+ K+ I+ RDG
Sbjct: 594 QRGESVDMNEFFKEMVDKFKEFNIKLDNKKILLLRDGR---------------------- 631
Query: 71 LSYTIFTGAEISAIKRACQGVEANYNPKVTFLVVQKRHHTRFFPTSPSEGDGSRNNNVRP 130
T E +K + ++ +V + V K H R F +
Sbjct: 632 -----ITNNEEEGLKYISE----MFDIEVVTMDVIKNHPVRAFA--------NMKMYFNL 674
Query: 131 GTIVDTTITHPTDLDFYLVSHQSIQVG 157
G P L + I++
Sbjct: 675 G---GAIYLIPHKLKQAKGTPIPIKLA 698
>2w42_A PIWI, putative uncharacterized protein; RNAI, RISC, argonaute, PIWI
domain, protein/DNA complex; 1.90A {Archaeoglobus
fulgidus} PDB: 1ytu_A 2bgg_A 1w9h_A
Length = 427
Score = 123 bits (310), Expect = 8e-32
Identities = 24/164 (14%), Positives = 44/164 (26%), Gaps = 18/164 (10%)
Query: 198 KPVHIIFYRDGVSEGQFQAVMSAEISAIKRACQGVEANYNPKVTFLVVQKRHHTRFFPTS 257
+ + G ++ + + + K L + + H
Sbjct: 245 DVEKLTLHVSGKRPKMKDGETKILKETVEELKKQEMVSRDVKYAILHLNETHPFWVMG-- 302
Query: 258 PSEGDGSRNNNVRPGTIVDTTITHPTDLDFYLVSHQSIQG-----TARPTKYYRLWDEYN 312
D + + GT V + L L + G +P + D +
Sbjct: 303 ----DPNNRFHPYEGTKVKLSSKRY--LLTLLQPYLKRNGLEMVTPIKPLSVEIVSDNWT 356
Query: 313 LTD-----DETEEMTYYLCHLFSRCTRSVSYPAPTYYAHLAAFR 351
+ E + YYL + R RS + P Y L A
Sbjct: 357 SEEYYHNVHEILDEIYYLSKMNWRGFRSRNLPVTVNYPKLVAGI 400
Score = 61.7 bits (149), Expect = 1e-10
Identities = 10/134 (7%), Positives = 26/134 (19%), Gaps = 26/134 (19%)
Query: 27 KKKKKKVNKVKPVHIIFYRDGVSEGQFQAVMRRCGPCSNRSVAGLSYTIFTGAEISAIKR 86
KK + + G + ++
Sbjct: 235 YGFKKSNPDWDVEKLTLHVSGKRPKMKDGETK--------------------ILKETVEE 274
Query: 87 ACQGVEANYNPKVTFLVVQKRHHTRFFPTSPSEGDGSRNNNVRPGTIVDTTITHPTDLDF 146
+ + + K L + + H D + + GT V +
Sbjct: 275 LKKQEMVSRDVKYAILHLNETHPFWVMG------DPNNRFHPYEGTKVKLSSKRYLLTLL 328
Query: 147 YLVSHQSIQVGILT 160
++ +
Sbjct: 329 QPYLKRNGLEMVTP 342
>4g0m_A Protein argonaute 2; MID domain, small RNA 5' nucleotide
recognition, gene regula; 2.31A {Arabidopsis thaliana}
Length = 150
Score = 59.0 bits (142), Expect = 8e-11
Identities = 13/41 (31%), Positives = 21/41 (51%)
Query: 154 IQVGILTQCIKEKTVFKMNPATTGNILLKINAKLNGINHYV 194
++G++TQC K N+ LK+NAK+ G N +
Sbjct: 110 TKLGLVTQCFLTGPATKGGDQYRANLALKMNAKVGGSNVEL 150
>3luc_A Protein argonaute-2; MID domain, ribonucleoprotein, RNA-binding,
RNA-mediated GEN silencing, translation regulation, RNA
binding protein; 1.69A {Homo sapiens} PDB: 3lud_A*
3lug_A 3luh_A 3luj_A* 3luk_A 3qx8_A* 3qx9_A*
Length = 138
Score = 57.8 bits (139), Expect = 1e-10
Identities = 17/38 (44%), Positives = 24/38 (63%)
Query: 154 IQVGILTQCIKEKTVFKMNPATTGNILLKINAKLNGIN 191
+G+ TQC++ K V + P T N+ LKIN KL G+N
Sbjct: 101 TVLGMATQCVQMKNVQRTTPQTLSNLCLKINVKLGGVN 138
>4g0o_A Protein argonaute 5; MID domain, small RNA 5' nucleotide
recognition, gene regula; 2.19A {Arabidopsis thaliana}
Length = 139
Score = 56.2 bits (135), Expect = 6e-10
Identities = 15/41 (36%), Positives = 24/41 (58%)
Query: 154 IQVGILTQCIKEKTVFKMNPATTGNILLKINAKLNGINHYV 194
++GI++QC + + V K+N N+ LKIN K G N +
Sbjct: 99 TELGIVSQCCQPRQVNKLNKQYMENVALKINVKTGGRNTVL 139
>4g0x_A Protein argonaute 1; MID domain, small RNA 5' nucleotide
recognition, gene regula; 1.35A {Arabidopsis thaliana}
PDB: 4g0q_A* 4g0p_A 4g0y_A* 4g0z_A*
Length = 147
Score = 54.3 bits (130), Expect = 3e-09
Identities = 17/41 (41%), Positives = 25/41 (60%)
Query: 154 IQVGILTQCIKEKTVFKMNPATTGNILLKINAKLNGINHYV 194
++GI++QC K VFKM+ N+ LKIN K+ G N +
Sbjct: 107 TELGIVSQCCLTKHVFKMSKQYMANVALKINVKVGGRNTVL 147
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 46.3 bits (109), Expect = 3e-06
Identities = 12/41 (29%), Positives = 22/41 (53%), Gaps = 6/41 (14%)
Query: 1 EEEEEDEKKKK----KKKKKEEEE--KKQKKQKKKKKKVNK 35
+E + K + +K KK+ EE ++Q +Q +K K N+
Sbjct: 99 QELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNR 139
Score = 39.8 bits (92), Expect = 6e-04
Identities = 4/47 (8%), Positives = 21/47 (44%), Gaps = 2/47 (4%)
Query: 1 EEEEEDEKKKK-KKKKKEEEEKKQKKQKKKKKKVNKVKPVHII-FYR 45
+E E +K ++++++ ++ K +++ + + + +
Sbjct: 79 RLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQ 125
Score = 30.5 bits (68), Expect = 0.65
Identities = 5/25 (20%), Positives = 11/25 (44%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKK 25
+ E+ EK K + ++ +Q
Sbjct: 126 RQSEQVEKNKINNRIADKAFYQQPD 150
Score = 29.4 bits (65), Expect = 1.6
Identities = 5/26 (19%), Positives = 11/26 (42%)
Query: 3 EEEDEKKKKKKKKKEEEEKKQKKQKK 28
+ + E+ +K K +K +Q
Sbjct: 125 QRQSEQVEKNKINNRIADKAFYQQPD 150
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 41.2 bits (96), Expect = 5e-04
Identities = 31/193 (16%), Positives = 64/193 (33%), Gaps = 74/193 (38%)
Query: 48 VSEGQFQAVMRRCG--PCSNRSVAGLSYTIFTGAEISAIKRACQ-GV---EANYNPKVTF 101
+ + F+ ++ G P ++ + AG S G E +A+ A V E+
Sbjct: 1739 MEKAAFE-DLKSKGLIP-ADATFAGHSL----G-EYAAL--ASLADVMSIES------LV 1783
Query: 102 LVVQKRHHTRFFPTSPSEGDGSRNN----NVRPGTIVDTTITHPTDLDFYLVSHQSIQVG 157
VV R + + R+N + PG + + S +++Q
Sbjct: 1784 EVVFYR--GMTMQVAVPRDELGRSNYGMIAINPGRVAAS------------FSQEALQY- 1828
Query: 158 ILTQCIKEKTVFKMNPATTGNILLKINAKLNGINHYVNKVKPVHIIFYRDGVSEGQFQAV 217
+ + + ++T L++I +N+ N E Q Q V
Sbjct: 1829 -VVERVGKRT----------GWLVEI------VNY--N--------------VENQ-QYV 1854
Query: 218 MSAEISAIKRACQ 230
+ ++ A+
Sbjct: 1855 AAGDLRALDTVTN 1867
Score = 37.3 bits (86), Expect = 0.008
Identities = 24/138 (17%), Positives = 40/138 (28%), Gaps = 52/138 (37%)
Query: 269 VRPGTIVDTTITH----PTDLDFYLVSHQSIQGTARPTKYYRLWDEYNLT---------- 314
RP T+ ++ H PT F +L +++N
Sbjct: 6 TRPLTLSHGSLEHVLLVPTASFFI---------------ASQLQEQFNKILPEPTEGFAA 50
Query: 315 DDET----EEMTYYLCHLFSRCTRSVSYPAPTYY----AHLAAFRGRVYIKNRHLDMNNL 366
DDE E + +L ++ S S + L F Y++
Sbjct: 51 DDEPTTPAELVGKFLGYVSSLVEPS---KVGQFDQVLNLCLTEFE-NCYLEG-------- 98
Query: 367 PRENQVHQANAEFLTNNP 384
N +H A+ L N
Sbjct: 99 ---NDIHALAAKLLQEND 113
Score = 34.6 bits (79), Expect = 0.063
Identities = 36/250 (14%), Positives = 63/250 (25%), Gaps = 101/250 (40%)
Query: 85 KRACQGVEANY----------NPK-VTFLVVQKR------HHTRFFPTSPSEGDGSRNNN 127
RA + Y NP +T ++ +++ + +G
Sbjct: 1647 NRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKI 1706
Query: 128 VRPGTIVDTTIT--HPTDLDFYLVSHQSIQVGILT------QCIKEKTVFKMNPATTGNI 179
+ T+ T L L + Q Q + + +K K + + G
Sbjct: 1707 FKEINEHSTSYTFRSEKGL---LSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAG-- 1761
Query: 180 LLKINAKLNGINH----Y-----VNKVKP----VHIIFYRDG------------------ 208
H Y + V V ++FYR G
Sbjct: 1762 ------------HSLGEYAALASLADVMSIESLVEVVFYR-GMTMQVAVPRDELGRSNYG 1808
Query: 209 ---VSEGQFQAVMSAEISAIKRACQGVEANYNPKVTFLVVQKRHHTRFFPTSPSEGDGSR 265
++ G+ A S E A++ + V V +V
Sbjct: 1809 MIAINPGRVAASFSQE--ALQYVVERVGKRTGWLVE--IV-------------------- 1844
Query: 266 NNNVRPGTIV 275
N NV V
Sbjct: 1845 NYNVENQQYV 1854
Score = 32.3 bits (73), Expect = 0.31
Identities = 26/144 (18%), Positives = 42/144 (29%), Gaps = 43/144 (29%)
Query: 39 VHIIFYRDGVSEGQF--QAVMRRCGPCSNRSVAGLS-YTIFTGAEISAIKRACQGVEANY 95
V ++FYR G AV R SN + ++ + A++ + V
Sbjct: 1783 VEVVFYR-----GMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRT 1837
Query: 96 NPKVTFLVVQKRHHTRFFPTSPSEGDGSRNNNVRPGTIV--------DTTITHPTDLDFY 147
V +V N NV V DT L+F
Sbjct: 1838 GWLVE--IV--------------------NYNVENQQYVAAGDLRALDTVT---NVLNF- 1871
Query: 148 LVSHQSIQVGILTQCIKEKTVFKM 171
+ Q I + L + + + V
Sbjct: 1872 -IKLQKIDIIELQKSLSLEEVEGH 1894
Score = 31.9 bits (72), Expect = 0.42
Identities = 41/254 (16%), Positives = 74/254 (29%), Gaps = 84/254 (33%)
Query: 134 VDTTITHPTDLDFYLVSHQSIQVGIL---------TQCIKEKTVFKMN-PATTGNI---- 179
+D T P L SH S++ +L +Q ++E+ F P T
Sbjct: 1 MDAYSTRPLTL-----SHGSLEHVLLVPTASFFIASQ-LQEQ--FNKILPEPTEGFAADD 52
Query: 180 -------LLKINAKLNGINHYVNKVKPVHIIFYRDGVSEGQFQAVMSAEISAIKRAC-QG 231
L+ K G ++ + GQF V++ ++ + +G
Sbjct: 53 EPTTPAELV---GKFLG-----------YVSSLVEPSKVGQFDQVLNLCLTEFENCYLEG 98
Query: 232 -----VEANYNPKVTFLVVQKRHHTR-FFPTSPSEGDGSRNNNVRPGTIVDTTITHPTDL 285
+ A + +V+ + + + +R RP + L
Sbjct: 99 NDIHALAAKLLQENDTTLVKTKELIKNYI--------TARIMAKRP-----FDKKSNSAL 145
Query: 286 DFYLVSHQSI--------QGTARPTKYYR----LWDEYN-LTDDETEEMTYYLCHLFSRC 332
F V + QG Y+ L+ Y+ L D + L L R
Sbjct: 146 -FRAVGEGNAQLVAIFGGQGN--TDDYFEELRDLYQTYHVLVGDLIKFSAETLSEL-IRT 201
Query: 333 TRSVSYPAPTYYAH 346
T A +
Sbjct: 202 TLD----AEKVFTQ 211
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 39.5 bits (91), Expect = 0.002
Identities = 66/460 (14%), Positives = 135/460 (29%), Gaps = 157/460 (34%)
Query: 5 EDEKKKKKKKKKEEEEKKQK----KQKKKKKKVNKVKPVHIIFYRDGVSE---GQFQAV- 56
+ E+++ + E++ + Q K V++++P + R + E + +
Sbjct: 99 KTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKL--RQALLELRPAKNVLID 156
Query: 57 -MRRCG-------PCSNRSV-AGLSYTIF---------TGAEISAIKRACQGVEANY--- 95
+ G C + V + + IF + +++ ++ N+
Sbjct: 157 GVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSR 216
Query: 96 -----NPKVTFLVVQKRHHTRFFPTSPSEG-----DGSRNNNVRPGTIVD---------- 135
N K+ +Q R + P E NV+ +
Sbjct: 217 SDHSSNIKLRIHSIQAEL-RRLLKSKPYENCLLVLL-----NVQNAKAWNAFNLSCKILL 270
Query: 136 TT----ITHPTDLDFYLVSHQSIQVGILTQCIKEKTVFKMNPATTGNILLK-INAKLNGI 190
TT +T L +H S+ + + P ++LLK ++ + +
Sbjct: 271 TTRFKQVT--DFLSAATTTHISL----------DHHSMTLTPDEVKSLLLKYLDCRPQDL 318
Query: 191 NHYVNKVKPVHI--I--FYRDGVSE-GQFQAVMSAEISAIKRACQGVEANYNPKVTFLVV 245
V P + I RDG++ ++ V +++ I + + P
Sbjct: 319 PREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESS--LN-VLEPAE----- 370
Query: 246 QKRHHTRF--FPTS---PSE------GDGSRNNNVRPGTIVDTTIT------HPTDL--- 285
++ R FP S P+ D +++ +V+ P +
Sbjct: 371 YRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSD---VMVVVNKLHKYSLVEKQPKESTIS 427
Query: 286 --DFYLVS----------HQSIQGTARPTKYYRLWDEYNLTDDETEEMTYYLCHLFSRCT 333
YL H+SI K + D D+ Y+ H+
Sbjct: 428 IPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQ-----YFYSHI----- 477
Query: 334 RSVSYPAPTYYAHLAA---------FRGRVYIKNRHLDMN 364
+ HL FR V+ LD
Sbjct: 478 ---GH-------HLKNIEHPERMTLFR-MVF-----LDFR 501
>3kio_B Ribonuclease H2 subunit B; aicardi-goutieres syndrome, RNAse H2,
protein complex, autoimmune disease, endonuclease,
hydrolase, metal-binding; 2.90A {Mus musculus} PDB:
3p5j_B 3puf_B 3p56_B
Length = 332
Score = 36.7 bits (84), Expect = 0.010
Identities = 11/36 (30%), Positives = 14/36 (38%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNKV 36
E E E K K + KK K +K + KV
Sbjct: 275 EPVEAKEDYTKFNTKDLKTGKKNSKMTAAQKALAKV 310
Score = 30.2 bits (67), Expect = 1.1
Identities = 9/37 (24%), Positives = 14/37 (37%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNKVK 37
+ + DE + K+ + K K KK K K
Sbjct: 269 KLKLSDEPVEAKEDYTKFNTKDLKTGKKNSKMTAAQK 305
Score = 29.0 bits (64), Expect = 2.4
Identities = 10/36 (27%), Positives = 14/36 (38%), Gaps = 3/36 (8%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNKV 36
E+ + K K KK K +K KV+K
Sbjct: 281 EDYTKFNTKDLKTGKK---NSKMTAAQKALAKVDKS 313
Score = 29.0 bits (64), Expect = 2.8
Identities = 11/48 (22%), Positives = 15/48 (31%), Gaps = 12/48 (25%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQ------------KKKKKKVNKV 36
+ +D K KK K +K K K KK K+
Sbjct: 285 KFNTKDLKTGKKNSKMTAAQKALAKVDKSGMKSIDAFFGAKNKKTGKI 332
>3iz5_e 60S ribosomal protein L7 (L30P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_e
Length = 244
Score = 36.0 bits (82), Expect = 0.014
Identities = 15/114 (13%), Positives = 42/114 (36%), Gaps = 3/114 (2%)
Query: 7 EKKKKKKKKKEEEEKKQKKQKKKKKKVNKVKPVHIIFYRDGVSEGQFQAVMRRCGPCSNR 66
EK K++++E ++K++ +K +I+ R G+++A +
Sbjct: 12 EKVILKRRREEVWAAEKKQKVAAEKIKAAENT-KVIYARAEQYAGEYEAQDKELVQLKRE 70
Query: 67 SVAGLSYTIFTGAEISAIKRACQGVEANYNPKVTF--LVVQKRHHTRFFPTSPS 118
+ + + A+ + R + K L +++ + F + +
Sbjct: 71 ARMKGGFYVSPEAKPLFVVRIRGINAMHPKTKKILQLLRLRQIFNGVFLKVNKA 124
>1qy5_A Endoplasmin; GRP94, NECA, HSP90, chaperone; HET: NEC; 1.75A {Canis
lupus familiaris} SCOP: d.122.1.1 PDB: 1qy8_A* 1qye_A*
1u0y_A* 1yt2_A*
Length = 269
Score = 34.9 bits (81), Expect = 0.028
Identities = 12/36 (33%), Positives = 23/36 (63%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNKV 36
EEEE +++K+ + E++++++K K KKV K
Sbjct: 226 EEEEAAKEEKEDSDDEAAVEEEEEEKKPKTKKVEKT 261
Score = 34.1 bits (79), Expect = 0.053
Identities = 11/40 (27%), Positives = 22/40 (55%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNKVKPVH 40
EEE+ K++K+ +E ++++++KK K K V
Sbjct: 224 PMEEEEAAKEEKEDSDDEAAVEEEEEEKKPKTKKVEKTVW 263
Score = 30.6 bits (70), Expect = 0.79
Identities = 6/45 (13%), Positives = 21/45 (46%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNKVKPVHIIFYR 45
+ E E+ ++++ +EE++ + +++ + KP +
Sbjct: 216 SKTETVEEPMEEEEAAKEEKEDSDDEAAVEEEEEEKKPKTKKVEK 260
>1v9d_A Diaphanous protein homolog 1; helix bundle, protein binding; 2.60A
{Mus musculus} SCOP: a.207.1.1
Length = 340
Score = 35.1 bits (81), Expect = 0.029
Identities = 8/30 (26%), Positives = 20/30 (66%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKK 30
E ++ E ++K ++ K +EK +K++ +K+
Sbjct: 311 ENQKRRETEEKMRRAKLAKEKAEKERLEKQ 340
Score = 31.3 bits (71), Expect = 0.53
Identities = 5/29 (17%), Positives = 20/29 (68%)
Query: 4 EEDEKKKKKKKKKEEEEKKQKKQKKKKKK 32
+E++K+++ ++K + ++K +K++ +
Sbjct: 310 KENQKRRETEEKMRRAKLAKEKAEKERLE 338
Score = 29.3 bits (66), Expect = 2.0
Identities = 8/24 (33%), Positives = 16/24 (66%)
Query: 9 KKKKKKKKEEEEKKQKKQKKKKKK 32
K+ +K++E EEK ++ + K+K
Sbjct: 309 VKENQKRRETEEKMRRAKLAKEKA 332
>3obv_E Protein diaphanous homolog 1; autoinhibition, actin, nucleation,
cytoskeleton, structural; HET: SUC; 2.75A {Mus musculus}
PDB: 3o4x_E 2bap_D
Length = 457
Score = 35.2 bits (81), Expect = 0.031
Identities = 9/38 (23%), Positives = 25/38 (65%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNKVKP 38
+ E +EK ++ K KE+ EK++ ++++K++++ +
Sbjct: 385 KRRETEEKMRRAKLAKEKAEKERLEKQQKREQLIDMNA 422
Score = 34.8 bits (80), Expect = 0.049
Identities = 9/39 (23%), Positives = 25/39 (64%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNKVKPV 39
E ++ E ++K ++ K +EK +K++ +K++K ++ +
Sbjct: 382 ENQKRRETEEKMRRAKLAKEKAEKERLEKQQKREQLIDM 420
Score = 28.7 bits (64), Expect = 4.1
Identities = 14/50 (28%), Positives = 25/50 (50%)
Query: 8 KKKKKKKKKEEEEKKQKKQKKKKKKVNKVKPVHIIFYRDGVSEGQFQAVM 57
K+ +K+++ EE+ ++ K K+K +K K D +EG VM
Sbjct: 381 KENQKRRETEEKMRRAKLAKEKAEKERLEKQQKREQLIDMNAEGDETGVM 430
Score = 27.9 bits (62), Expect = 7.3
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 7 EKKKKKKKKKEEEEKKQKKQKKKKKKV 33
K K KK +E E+K+ QKKK K++
Sbjct: 54 TKTSKAKKDQEGGEEKKSVQKKKVKEL 80
Score = 27.5 bits (61), Expect = 7.5
Identities = 8/24 (33%), Positives = 16/24 (66%)
Query: 9 KKKKKKKKEEEEKKQKKQKKKKKK 32
K+ +K++E EEK ++ + K+K
Sbjct: 380 VKENQKRRETEEKMRRAKLAKEKA 403
>3lvh_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 9.00A {Bos
taurus}
Length = 205
Score = 34.1 bits (77), Expect = 0.050
Identities = 12/35 (34%), Positives = 20/35 (57%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNK 35
+ E E ++K KK EE ++Q +Q +K K N+
Sbjct: 120 SKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNR 154
Score = 32.2 bits (72), Expect = 0.22
Identities = 7/46 (15%), Positives = 21/46 (45%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNKVKPVHIIFYRD 46
+E E +K +++++K +E + +++ K K + +
Sbjct: 96 TQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQR 141
Score = 28.3 bits (62), Expect = 3.4
Identities = 3/32 (9%), Positives = 17/32 (53%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKK 32
+E + +K ++++++ ++ K +++
Sbjct: 95 LTQEPESIRKWREEQRKRLQELDAASKVMEQE 126
Score = 28.0 bits (61), Expect = 5.1
Identities = 9/39 (23%), Positives = 21/39 (53%), Gaps = 5/39 (12%)
Query: 1 EEEEEDEKKKKKK-----KKKEEEEKKQKKQKKKKKKVN 34
+E + K +++ KK EE +++ ++ +K K+N
Sbjct: 114 QELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKIN 152
>1kxf_A Sindbis virus capsid protein; chymotrypsin-like serine proteinase,
wild type, viral protein; 2.38A {Sindbis virus} SCOP:
b.47.1.3 PDB: 1ld4_A 3j0f_A
Length = 264
Score = 33.6 bits (76), Expect = 0.091
Identities = 14/32 (43%), Positives = 21/32 (65%)
Query: 7 EKKKKKKKKKEEEEKKQKKQKKKKKKVNKVKP 38
++KK+ K+ + KK K Q+KKKK+ K KP
Sbjct: 69 PRQKKQAPKQPPKPKKPKPQEKKKKQPAKTKP 100
Score = 32.5 bits (73), Expect = 0.19
Identities = 8/31 (25%), Positives = 17/31 (54%)
Query: 8 KKKKKKKKKEEEEKKQKKQKKKKKKVNKVKP 38
++KK+ ++ K +K + ++KKK K
Sbjct: 68 PPRQKKQAPKQPPKPKKPKPQEKKKKQPAKT 98
Score = 31.3 bits (70), Expect = 0.42
Identities = 6/32 (18%), Positives = 16/32 (50%)
Query: 7 EKKKKKKKKKEEEEKKQKKQKKKKKKVNKVKP 38
+ ++KK+ ++ + K+ K ++K K
Sbjct: 65 PRPPPRQKKQAPKQPPKPKKPKPQEKKKKQPA 96
Score = 30.5 bits (68), Expect = 0.77
Identities = 8/32 (25%), Positives = 16/32 (50%)
Query: 7 EKKKKKKKKKEEEEKKQKKQKKKKKKVNKVKP 38
++KK+ ++ K KK K ++KK +
Sbjct: 66 RPPPRQKKQAPKQPPKPKKPKPQEKKKKQPAK 97
Score = 30.2 bits (67), Expect = 0.92
Identities = 8/32 (25%), Positives = 18/32 (56%)
Query: 7 EKKKKKKKKKEEEEKKQKKQKKKKKKVNKVKP 38
+KK+ K+ + ++ K +++KKK+ K
Sbjct: 71 QKKQAPKQPPKPKKPKPQEKKKKQPAKTKPGK 102
Score = 29.8 bits (66), Expect = 1.3
Identities = 10/33 (30%), Positives = 17/33 (51%)
Query: 7 EKKKKKKKKKEEEEKKQKKQKKKKKKVNKVKPV 39
K+ K KK + ++K+KKQ K K + +
Sbjct: 75 APKQPPKPKKPKPQEKKKKQPAKTKPGKRQRMA 107
Score = 29.0 bits (64), Expect = 2.4
Identities = 10/32 (31%), Positives = 18/32 (56%)
Query: 2 EEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKV 33
++ + K KK K +E++KKQ + K K+
Sbjct: 73 KQAPKQPPKPKKPKPQEKKKKQPAKTKPGKRQ 104
>2w4s_A Ankyrin-repeat protein; RNA transport, structural protein; 2.45A
{Cryptosporidium parvum}
Length = 113
Score = 31.9 bits (72), Expect = 0.096
Identities = 9/37 (24%), Positives = 17/37 (45%)
Query: 3 EEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNKVKPV 39
ED+ ++ +EEK++ K K+ N+ V
Sbjct: 77 VAEDQITIQEWNYIRQEEKERINAKNILKRNNRRCQV 113
>2riq_A Poly [ADP-ribose] polymerase 1; Zn-binding domain, Zn ribbon, Zn
finger, ADP-ribosylation, D damage, DNA repair,
DNA-binding, glycosyltransferase; 1.70A {Homo sapiens}
PDB: 2jvn_A
Length = 160
Score = 32.3 bits (73), Expect = 0.11
Identities = 10/33 (30%), Positives = 20/33 (60%)
Query: 5 EDEKKKKKKKKKEEEEKKQKKQKKKKKKVNKVK 37
++ KKK KK+K+++ K +K K + + +K
Sbjct: 3 DEVAKKKSKKEKDKDSKLEKALKAQNDLIWNIK 35
Score = 27.3 bits (60), Expect = 6.2
Identities = 10/28 (35%), Positives = 14/28 (50%)
Query: 2 EEEEDEKKKKKKKKKEEEEKKQKKQKKK 29
+E +K KK+K K + EK K Q
Sbjct: 3 DEVAKKKSKKEKDKDSKLEKALKAQNDL 30
>2cg9_A ATP-dependent molecular chaperone HSP82; chaperone complex, HSP90,
heat shock protein, ATP-binding, heat shock,
nucleotide-binding, acetylation; HET: ATP; 3.1A
{Saccharomyces cerevisiae}
Length = 677
Score = 33.6 bits (77), Expect = 0.12
Identities = 17/47 (36%), Positives = 29/47 (61%), Gaps = 8/47 (17%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKK--------VNKVKPV 39
++EE+ ++ KK K +E +E+++KK K KK K +NK KP+
Sbjct: 230 KDEEKKDEDDKKPKLEEVDEEEEKKPKTKKVKEEVQEIEELNKTKPL 276
Score = 31.7 bits (72), Expect = 0.47
Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKK-KKKVNKVK 37
E EE DE+K +++K+ +E E K K+ +V KV
Sbjct: 529 ELEETDEEKAEREKEIKEYEPLTKALKEILGDQVEKVV 566
Score = 29.0 bits (65), Expect = 3.0
Identities = 10/41 (24%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Query: 3 EEEDEKKKKKKKKKEEEEKKQKKQKKKKKKV--NKVKPVHI 41
+ E E+ ++K ++E+E K+ + K K++ ++V+ V +
Sbjct: 527 DFELEETDEEKAEREKEIKEYEPLTKALKEILGDQVEKVVV 567
>3izc_e 60S ribosomal protein RPL7 (L30P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel
ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB:
3izs_e 3o58_G 3o5h_G 3u5e_F 3u5i_F
Length = 244
Score = 32.5 bits (73), Expect = 0.20
Identities = 11/39 (28%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 7 EKKKKKKKKKEEEEKKQKKQKKKKKKVNKVKPVHIIFYR 45
E + KK K +++ ++ ++ +K NK K II R
Sbjct: 10 ESQLKKSKAQQKTAEQVAAERAARKAANKEKR-AIILER 47
Score = 28.6 bits (63), Expect = 2.9
Identities = 4/26 (15%), Positives = 10/26 (38%)
Query: 6 DEKKKKKKKKKEEEEKKQKKQKKKKK 31
+K ++ + K K+K+
Sbjct: 19 QQKTAEQVAAERAARKAANKEKRAII 44
>3u5c_Z RP45, S31, YS23, 40S ribosomal protein S25-A; translation,
ribosome, ribosomal, ribosomal R ribosomal protein,
eukaryotic ribosome, RNA-protein C; 3.00A
{Saccharomyces cerevisiae} PDB: 3izb_V 3o30_Q 3o2z_Q
3u5g_Z
Length = 108
Score = 30.7 bits (69), Expect = 0.25
Identities = 8/30 (26%), Positives = 12/30 (40%)
Query: 8 KKKKKKKKKEEEEKKQKKQKKKKKKVNKVK 37
K++ K K K+ KKK +K
Sbjct: 4 KQQLSKAAKAAAALAGGKKSKKKWSKKSMK 33
Score = 28.1 bits (62), Expect = 2.2
Identities = 8/29 (27%), Positives = 12/29 (41%)
Query: 9 KKKKKKKKEEEEKKQKKQKKKKKKVNKVK 37
K++ K + KK KKK +K
Sbjct: 3 PKQQLSKAAKAAAALAGGKKSKKKWSKKS 31
Score = 27.7 bits (61), Expect = 3.1
Identities = 7/28 (25%), Positives = 11/28 (39%)
Query: 6 DEKKKKKKKKKEEEEKKQKKQKKKKKKV 33
+ K K K+ K+K KK +
Sbjct: 5 QQLSKAAKAAAALAGGKKSKKKWSKKSM 32
Score = 26.5 bits (58), Expect = 6.9
Identities = 8/32 (25%), Positives = 12/32 (37%)
Query: 5 EDEKKKKKKKKKEEEEKKQKKQKKKKKKVNKV 36
+ K K KK KK+ KK ++
Sbjct: 5 QQLSKAAKAAAALAGGKKSKKKWSKKSMKDRA 36
>2zkr_c 60S ribosomal protein L4; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 421
Score = 32.2 bits (72), Expect = 0.26
Identities = 14/39 (35%), Positives = 18/39 (46%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNKVKPV 39
E+ +K ++KK KK KK KK KK KP
Sbjct: 364 EKGVPGKKPRRKKGKKTVGVKKPKKPVVGKKAAATKKPA 402
Score = 31.0 bits (69), Expect = 0.71
Identities = 12/33 (36%), Positives = 16/33 (48%)
Query: 5 EDEKKKKKKKKKEEEEKKQKKQKKKKKKVNKVK 37
+EK KK + ++ KK KK KK V K
Sbjct: 362 SEEKGVPGKKPRRKKGKKTVGVKKPKKPVVGKK 394
Score = 28.3 bits (62), Expect = 5.4
Identities = 9/32 (28%), Positives = 13/32 (40%)
Query: 8 KKKKKKKKKEEEEKKQKKQKKKKKKVNKVKPV 39
KK KK ++ K+ KK + KP
Sbjct: 382 GVKKPKKPVVGKKAAATKKPAADKKPAEKKPT 413
Score = 27.9 bits (61), Expect = 7.1
Identities = 10/32 (31%), Positives = 14/32 (43%)
Query: 7 EKKKKKKKKKEEEEKKQKKQKKKKKKVNKVKP 38
E+K KK ++ K+ KK KK K
Sbjct: 363 EEKGVPGKKPRRKKGKKTVGVKKPKKPVVGKK 394
Score = 27.5 bits (60), Expect = 9.0
Identities = 10/38 (26%), Positives = 15/38 (39%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNKVKP 38
++ + KK KK ++ KK KK KP
Sbjct: 370 KKPRRKKGKKTVGVKKPKKPVVGKKAAATKKPAADKKP 407
>3hjc_A Heat shock protein 83-1; sleeping sickness, structura genomics,
stress response protein, chaperone, structural GE
consortium, SGC; 2.50A {Leishmania major}
Length = 444
Score = 32.3 bits (74), Expect = 0.27
Identities = 11/36 (30%), Positives = 22/36 (61%)
Query: 2 EEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNKVK 37
EE E+EK++++++K E+ + ++ KV KV
Sbjct: 278 EESEEEKQQREEEKAACEKLCKTMKEVLGDKVEKVI 313
Score = 27.7 bits (62), Expect = 8.3
Identities = 13/42 (30%), Positives = 26/42 (61%), Gaps = 2/42 (4%)
Query: 2 EEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKV--NKVKPVHI 41
E E+ +++K+++EEE+ +K K K+V +KV+ V +
Sbjct: 273 EGVHFEESEEEKQQREEEKAACEKLCKTMKEVLGDKVEKVIV 314
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 361
Score = 32.1 bits (72), Expect = 0.28
Identities = 3/32 (9%), Positives = 14/32 (43%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKK 32
E+E + ++ ++ + + + + + Q
Sbjct: 323 LEKEAELRRMQEMIARMQAQMQMQMQGGDGDG 354
Score = 28.7 bits (63), Expect = 3.1
Identities = 4/33 (12%), Positives = 13/33 (39%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKV 33
E+E E + ++ + + + + Q +
Sbjct: 324 EKEAELRRMQEMIARMQAQMQMQMQGGDGDGGA 356
>3v6i_A V-type ATP synthase subunit E; peripheral stator stalk, right
handed coiled-coil, ATPase/SY ATP binding, membrane,
hydrolase; 2.25A {Thermus thermophilus} PDB: 3k5b_E
3j0j_J
Length = 187
Score = 31.4 bits (71), Expect = 0.33
Identities = 5/37 (13%), Positives = 16/37 (43%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNKVK 37
E EE+ + + +++ E + + ++ + V
Sbjct: 32 EAEEKAKALLQARERALEAQYRAALRRAESAGELLVA 68
Score = 28.3 bits (63), Expect = 3.1
Identities = 6/34 (17%), Positives = 17/34 (50%)
Query: 2 EEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNK 35
+E + K + K++ EE+ K + +++ +
Sbjct: 19 LQEAEAKAEAVKREAEEKAKALLQARERALEAQY 52
>2kqr_A Asparaginyl-tRNA synthetase, cytoplasmic; aminoacyl-tRNA
synthetase, ATP-binding, ligas nucleotide-binding,
protein biosynthesis; NMR {Brugia malayi}
Length = 113
Score = 30.4 bits (68), Expect = 0.34
Identities = 7/36 (19%), Positives = 16/36 (44%)
Query: 6 DEKKKKKKKKKEEEEKKQKKQKKKKKKVNKVKPVHI 41
+++ K +K + +K + K + + K V I
Sbjct: 69 EQEMLKNEKVAAKMLEKDATEVGVKAALEEAKKVQI 104
Score = 26.9 bits (59), Expect = 5.0
Identities = 8/28 (28%), Positives = 14/28 (50%)
Query: 10 KKKKKKKEEEEKKQKKQKKKKKKVNKVK 37
KK K+ E+E K +K K + + +
Sbjct: 62 KKSWKRYEQEMLKNEKVAAKMLEKDATE 89
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin
subfragment 2, heavy meromyosin, essential light chain,
motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP:
i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 32.1 bits (73), Expect = 0.37
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 12/49 (24%)
Query: 1 EEEEEDEKKKKKKKK------------KEEEEKKQKKQKKKKKKVNKVK 37
EEEE ++ + +KKK +EEE +QK Q +K K+K
Sbjct: 938 EEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIK 986
Score = 29.4 bits (66), Expect = 2.4
Identities = 11/37 (29%), Positives = 23/37 (62%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNKVK 37
++E E+ + + + +EEEE+ Q+ Q +KKK ++
Sbjct: 922 KQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQML 958
>4a17_V RPL7, 60S ribosomal protein L7; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB:
4a1a_V 4a1c_V 4a1e_V
Length = 239
Score = 31.3 bits (70), Expect = 0.38
Identities = 9/36 (25%), Positives = 16/36 (44%)
Query: 7 EKKKKKKKKKEEEEKKQKKQKKKKKKVNKVKPVHII 42
E +KK + E+ K + +Q+K K + I
Sbjct: 7 ENVQKKLARDEKLRKAKAEQRKASSAQMKQRKAEWI 42
>1ois_A DNA topoisomerase I; DNA-binding protein; HET: DNA; 1.90A
{Saccharomyces cerevisiae} SCOP: e.15.1.1
Length = 223
Score = 31.4 bits (71), Expect = 0.39
Identities = 8/26 (30%), Positives = 19/26 (73%)
Query: 7 EKKKKKKKKKEEEEKKQKKQKKKKKK 32
+ +K++KK+ +EKKQ + +++K +
Sbjct: 102 QLQKEQKKQLTSQEKKQIRLEREKFE 127
Score = 28.7 bits (64), Expect = 2.9
Identities = 6/27 (22%), Positives = 19/27 (70%)
Query: 6 DEKKKKKKKKKEEEEKKQKKQKKKKKK 32
+K++KK+ +E+K+ + +++K ++
Sbjct: 102 QLQKEQKKQLTSQEKKQIRLEREKFEE 128
>2cge_A ATP-dependent molecular chaperone HSP82; chaperone complex, heat
shock protein, CO-chaperone, ATP-binding, heat shock;
3.0A {Saccharomyces cerevisiae}
Length = 405
Score = 31.9 bits (73), Expect = 0.39
Identities = 11/36 (30%), Positives = 21/36 (58%)
Query: 2 EEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNKVK 37
EE ++EK +++K+ KE E + ++ +V KV
Sbjct: 259 EETDEEKAEREKEIKEYEPLTKALKEILGDQVEKVV 294
Score = 28.4 bits (64), Expect = 4.1
Identities = 10/41 (24%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Query: 3 EEEDEKKKKKKKKKEEEEKKQKKQKKKKKKV--NKVKPVHI 41
+ E E+ ++K ++E+E K+ + K K++ ++V+ V +
Sbjct: 255 DFELEETDEEKAEREKEIKEYEPLTKALKEILGDQVEKVVV 295
>3q6m_A Heat shock protein HSP 90-alpha; three domains, trimer of dimer,
hexamer, chaperone; 3.00A {Homo sapiens} PDB: 3q6n_A
Length = 448
Score = 31.9 bits (73), Expect = 0.39
Identities = 14/36 (38%), Positives = 23/36 (63%)
Query: 2 EEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNKVK 37
E+E+EKKK+++KK + E + + +KKV KV
Sbjct: 262 PEDEEEKKKQEEKKTKFENLCKIMKDILEKKVEKVV 297
Score = 27.3 bits (61), Expect = 9.9
Identities = 13/42 (30%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Query: 2 EEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKV--NKVKPVHI 41
E E + +++KKK+EE++ K + K K + KV+ V +
Sbjct: 257 EGLELPEDEEEKKKQEEKKTKFENLCKIMKDILEKKVEKVVV 298
>2xzm_K RPS14E; ribosome, translation; 3.93A {Tetrahymena thermophila}
PDB: 2xzn_K 3j0o_K 3j0l_K 2zkq_k 3iz6_K 3jyv_K*
Length = 151
Score = 30.6 bits (69), Expect = 0.40
Identities = 7/33 (21%), Positives = 10/33 (30%), Gaps = 2/33 (6%)
Query: 9 KKKKKKKKEEEEKKQKKQKKKKKKVNKVKPVHI 41
KK ++E + V V HI
Sbjct: 3 PKKTAPVQKEVISYGPPNVGANENVFGV--CHI 33
>1b6a_A Methionine aminopeptidase; angiogenesis inhibitor; HET: TN4; 1.60A
{Homo sapiens} SCOP: a.4.5.25 d.127.1.1 PDB: 1qzy_A*
1boa_A* 1kq0_A 1kq9_A 1bn5_A* 1b59_A* 1yw9_A* 1r5g_A*
1r5h_A* 1r58_A* 1yw8_A* 1yw7_A* 2adu_A* 2ea2_A* 2ea4_A*
2ga2_A* 2oaz_A*
Length = 478
Score = 31.8 bits (72), Expect = 0.41
Identities = 14/59 (23%), Positives = 27/59 (45%), Gaps = 6/59 (10%)
Query: 2 EEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNKV------KPVHIIFYRDGVSEGQFQ 54
E++E ++ + + +KK+KKKKK+ KV P+ ++ +GQ
Sbjct: 77 EDKERDEDDEDGDGDGDGATGKKKKKKKKKRGPKVQTDPPSVPICDLYPNGVFPKGQEC 135
Score = 31.0 bits (70), Expect = 0.59
Identities = 9/37 (24%), Positives = 16/37 (43%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNKVK 37
+ E + K++ + E+ + KKKK K K
Sbjct: 70 QLERSALEDKERDEDDEDGDGDGDGATGKKKKKKKKK 106
Score = 31.0 bits (70), Expect = 0.76
Identities = 8/35 (22%), Positives = 17/35 (48%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNK 35
ED+++ + + + + +KKKKKK +
Sbjct: 73 RSALEDKERDEDDEDGDGDGDGATGKKKKKKKKKR 107
Score = 30.3 bits (68), Expect = 1.0
Identities = 10/38 (26%), Positives = 18/38 (47%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNKVKP 38
E ++K++ + + + + KKKKKK K P
Sbjct: 72 ERSALEDKERDEDDEDGDGDGDGATGKKKKKKKKKRGP 109
Score = 29.1 bits (65), Expect = 2.6
Identities = 9/38 (23%), Positives = 16/38 (42%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNKVKP 38
E E K++ + ++ + KKKKK K +
Sbjct: 71 LERSALEDKERDEDDEDGDGDGDGATGKKKKKKKKKRG 108
Score = 29.1 bits (65), Expect = 2.7
Identities = 7/27 (25%), Positives = 16/27 (59%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQK 27
+ + + + KKKKK+++++ K Q
Sbjct: 87 DGDGDGDGATGKKKKKKKKKRGPKVQT 113
Score = 28.7 bits (64), Expect = 4.0
Identities = 11/38 (28%), Positives = 20/38 (52%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNKVKP 38
EE + +++KKKK K +Q+ K+ V++V
Sbjct: 32 EEAAKKKRRKKKKSKGPSAAGEQEPDKESGASVDEVAR 69
>3bn0_A 30S ribosomal protein S16; ribonucleoprotein, ribosome; 2.00A
{Aquifex aeolicus} SCOP: d.27.1.1
Length = 112
Score = 30.0 bits (68), Expect = 0.44
Identities = 6/32 (18%), Positives = 14/32 (43%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKK 32
+E + + K+ EK++ K+ K +
Sbjct: 80 KEVVPEGYEMKRVGDYYVFEKRESKKSKGGEA 111
>2zkr_w 60S ribosomal protein L7; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 270
Score = 31.4 bits (70), Expect = 0.49
Identities = 10/36 (27%), Positives = 18/36 (50%)
Query: 7 EKKKKKKKKKEEEEKKQKKQKKKKKKVNKVKPVHII 42
E KKK++ E + K+ ++K K + K + I
Sbjct: 38 ETLKKKRRNFAELKVKRLRKKFALKTLRKARRKLIY 73
Score = 28.7 bits (63), Expect = 3.5
Identities = 7/27 (25%), Positives = 14/27 (51%)
Query: 6 DEKKKKKKKKKEEEEKKQKKQKKKKKK 32
E K K+ +KK + +K ++K +
Sbjct: 48 AELKVKRLRKKFALKTLRKARRKLIYE 74
Score = 27.9 bits (61), Expect = 5.4
Identities = 6/28 (21%), Positives = 13/28 (46%)
Query: 6 DEKKKKKKKKKEEEEKKQKKQKKKKKKV 33
+ K K+ +K+ K +K ++K
Sbjct: 47 FAELKVKRLRKKFALKTLRKARRKLIYE 74
>3iz5_X 60S ribosomal protein L23A (L23P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel
ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
PDB: 3izr_X 2go5_4 2j37_4
Length = 152
Score = 30.2 bits (68), Expect = 0.53
Identities = 9/33 (27%), Positives = 12/33 (36%)
Query: 9 KKKKKKKKEEEEKKQKKQKKKKKKVNKVKPVHI 41
K KK + ++ K K K K K I
Sbjct: 4 KAAVKKADGKTQQALKVAKAVKSGSIKRKSKKI 36
>2j1d_G DAAM1, disheveled-associated activator of morphogenesis; actin
assembly, protein binding; 2.55A {Homo sapiens} PDB:
2z6e_A
Length = 483
Score = 31.0 bits (70), Expect = 0.60
Identities = 7/31 (22%), Positives = 20/31 (64%)
Query: 5 EDEKKKKKKKKKEEEEKKQKKQKKKKKKVNK 35
++ + +KKK++EE + + Q K++++ +
Sbjct: 393 QENENMRKKKEEEERRARMEAQLKEQRERER 423
Score = 30.6 bits (69), Expect = 0.85
Identities = 8/33 (24%), Positives = 22/33 (66%)
Query: 7 EKKKKKKKKKEEEEKKQKKQKKKKKKVNKVKPV 39
++ + +KKKEEEE++ + + + K++ + + +
Sbjct: 393 QENENMRKKKEEEERRARMEAQLKEQRERERKM 425
Score = 30.2 bits (68), Expect = 1.3
Identities = 9/35 (25%), Positives = 22/35 (62%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNK 35
++EEE+ + + + + KE+ E+++K +K K+
Sbjct: 401 KKEEEERRARMEAQLKEQRERERKMRKAKENSEES 435
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM,
protein engineering, structural protein; HET: ADP; 2.80A
{Dictyostelium discoideum} SCOP: k.1.1.1
Length = 1010
Score = 31.2 bits (71), Expect = 0.68
Identities = 5/37 (13%), Positives = 11/37 (29%), Gaps = 1/37 (2%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNKVK 37
E D + + + + + Q + N V
Sbjct: 927 NLEAFDGECQSLEGQSNSDLLSILAQLTELNY-NGVP 962
>3iz6_V 40S ribosomal protein S25 (S25E); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel
ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Length = 108
Score = 29.2 bits (65), Expect = 0.69
Identities = 10/30 (33%), Positives = 12/30 (40%)
Query: 8 KKKKKKKKKEEEEKKQKKQKKKKKKVNKVK 37
K K + + KQKKKK K K
Sbjct: 5 KDKAPPPSSKPAKSGGGKQKKKKWSKGKQK 34
Score = 29.2 bits (65), Expect = 0.77
Identities = 11/29 (37%), Positives = 14/29 (48%)
Query: 9 KKKKKKKKEEEEKKQKKQKKKKKKVNKVK 37
KK K + K K+KKKK +K K
Sbjct: 4 KKDKAPPPSSKPAKSGGGKQKKKKWSKGK 32
Score = 28.8 bits (64), Expect = 0.96
Identities = 9/29 (31%), Positives = 13/29 (44%)
Query: 5 EDEKKKKKKKKKEEEEKKQKKQKKKKKKV 33
+D+ K + KQKK+K K K
Sbjct: 5 KDKAPPPSSKPAKSGGGKQKKKKWSKGKQ 33
Score = 26.1 bits (57), Expect = 8.5
Identities = 9/34 (26%), Positives = 19/34 (55%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVN 34
+++ K K +++KK+ + K+K+KVN
Sbjct: 5 KDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVN 38
Score = 26.1 bits (57), Expect = 8.8
Identities = 10/36 (27%), Positives = 18/36 (50%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNKV 36
++ K K ++++KK K K+K+K N V
Sbjct: 6 DKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNSV 41
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 31.2 bits (71), Expect = 0.69
Identities = 5/31 (16%), Positives = 13/31 (41%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKK 31
+E+ ++ K +K E + +K +
Sbjct: 938 DEQNKEYKSLLEKMNNLEITYSTETEKLRSD 968
Score = 29.7 bits (67), Expect = 1.9
Identities = 8/35 (22%), Positives = 15/35 (42%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNK 35
EEE + + +EE K +K+ + + K
Sbjct: 974 MSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKK 1008
Score = 29.7 bits (67), Expect = 2.2
Identities = 7/36 (19%), Positives = 15/36 (41%)
Query: 2 EEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNKVK 37
E+E K + +E+ K +K+ + + K
Sbjct: 973 RMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKK 1008
Score = 28.2 bits (63), Expect = 6.4
Identities = 8/37 (21%), Positives = 14/37 (37%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNKVK 37
K++ KK K E ++ +K NK+
Sbjct: 895 CCYRRMMAKRELKKLKIEARSVERYKKLHIGLENKIM 931
Score = 27.8 bits (62), Expect = 7.1
Identities = 4/32 (12%), Positives = 13/32 (40%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKK 32
E+ +E + +K E + ++ + +
Sbjct: 939 EQNKEYKSLLEKMNNLEITYSTETEKLRSDVE 970
>2zkr_r 60S ribosomal protein L17; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 184
Score = 30.3 bits (68), Expect = 0.78
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 7 EKKKKKKKKKEEEEKKQKKQKKKKKK 32
EK++ K +EE +K+K +KK KK
Sbjct: 152 EKEQIVPKPEEEVAQKKKISQKKLKK 177
Score = 28.7 bits (64), Expect = 2.6
Identities = 11/33 (33%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 1 EEEEEDEKKK-KKKKKKEEEEKKQKKQKKKKKK 32
E+E+ K + + +KK+ +KK KKQK ++
Sbjct: 152 EKEQIVPKPEEEVAQKKKISQKKLKKQKLMARE 184
Score = 28.4 bits (63), Expect = 3.1
Identities = 9/31 (29%), Positives = 18/31 (58%)
Query: 2 EEEEDEKKKKKKKKKEEEEKKQKKQKKKKKK 32
E+E K +++ ++++ QKK KK+K
Sbjct: 151 TEKEQIVPKPEEEVAQKKKISQKKLKKQKLM 181
Score = 28.4 bits (63), Expect = 3.4
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 7 EKKKKKKKKKEEEEKKQKKQKKKKKKVNKVK 37
+K++ K EEE ++KK +KK K K+
Sbjct: 151 TEKEQIVPKPEEEVAQKKKISQKKLKKQKLM 181
Score = 27.6 bits (61), Expect = 4.9
Identities = 7/33 (21%), Positives = 21/33 (63%)
Query: 3 EEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNK 35
E+++ K +++ +++K +K+ KK+K + +
Sbjct: 151 TEKEQIVPKPEEEVAQKKKISQKKLKKQKLMAR 183
>2l16_A SEC-independent protein translocase protein tatad; membrane
protein, protein transport; NMR {Bacillus subtilis}
Length = 78
Score = 28.4 bits (63), Expect = 0.79
Identities = 3/28 (10%), Positives = 12/28 (42%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKK 28
+E+E++ + K+++ +
Sbjct: 50 GDEKEEKSAELTAVKQDKNAGLEHHHHH 77
>2zkr_u 60S ribosomal protein L24; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 157
Score = 30.0 bits (67), Expect = 0.82
Identities = 9/37 (24%), Positives = 19/37 (51%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNKVK 37
++ E K ++++ + +E K+ KQ KK + K
Sbjct: 95 NQKPEVRKAQREQAIRAAKEAKKAKQASKKTAMAAAK 131
Score = 28.1 bits (62), Expect = 3.1
Identities = 10/38 (26%), Positives = 16/38 (42%)
Query: 2 EEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNKVKPV 39
+E +K K+ KK K + K+K+ K V
Sbjct: 111 AAKEAKKAKQASKKTAMAAAKAPTKAAPKQKIVKPVKV 148
Score = 27.3 bits (60), Expect = 5.2
Identities = 7/36 (19%), Positives = 12/36 (33%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNKV 36
++ + K + KQK K K +V
Sbjct: 118 AKQASKKTAMAAAKAPTKAAPKQKIVKPVKVSAPRV 153
Score = 27.3 bits (60), Expect = 6.5
Identities = 8/37 (21%), Positives = 16/37 (43%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNKVK 37
+E ++ ++ KK + + K+K K KV
Sbjct: 113 KEAKKAKQASKKTAMAAAKAPTKAAPKQKIVKPVKVS 149
>2b9s_A Topoisomerase I-like protein; vanadate complex, isomerase/DNA
complex; HET: DNA; 2.27A {Leishmania donovani}
Length = 432
Score = 30.4 bits (68), Expect = 1.00
Identities = 8/26 (30%), Positives = 16/26 (61%)
Query: 7 EKKKKKKKKKEEEEKKQKKQKKKKKK 32
+++KK + +EEKK K+K+ +
Sbjct: 112 LVQREKKLSRTKEEKKAIKEKQDAEA 137
Score = 28.1 bits (62), Expect = 5.9
Identities = 6/27 (22%), Positives = 17/27 (62%)
Query: 6 DEKKKKKKKKKEEEEKKQKKQKKKKKK 32
+++KK + +EE+K K+++ + +
Sbjct: 112 LVQREKKLSRTKEEKKAIKEKQDAEAE 138
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil
(dimeric, parallel), familial hypertrophic
cardiomyopathy, FHC-associated mutant E924K; 2.50A
{Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Length = 129
Score = 29.1 bits (65), Expect = 1.0
Identities = 9/36 (25%), Positives = 21/36 (58%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNKV 36
E+E K++ + KE EK + ++K+ ++K+ +
Sbjct: 11 REKEMASMKEEFTRLKEALEKSEARRKELEEKMVSL 46
Score = 28.7 bits (64), Expect = 1.4
Identities = 7/29 (24%), Positives = 15/29 (51%)
Query: 3 EEEDEKKKKKKKKKEEEEKKQKKQKKKKK 31
E E E K++ +E +K + ++K+
Sbjct: 10 EREKEMASMKEEFTRLKEALEKSEARRKE 38
>3bbn_K Ribosomal protein S11; small ribosomal subunit, spinach
chloroplast ribosome, ribonucleoprotein particle,
macromolecular complex; 9.40A {Spinacea oleracea} SCOP:
i.1.1.1
Length = 140
Score = 29.2 bits (66), Expect = 1.1
Identities = 4/32 (12%), Positives = 9/32 (28%)
Query: 10 KKKKKKKEEEEKKQKKQKKKKKKVNKVKPVHI 41
K K + +K + +H+
Sbjct: 3 KPIPKIGSRRNGRISSRKSASARKIPKGVIHV 34
>2o1u_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, AMP-PNP, GP96;
HET: ANP; 2.40A {Canis lupus familiaris} PDB: 2o1v_A*
2o1w_A 2o1t_A
Length = 666
Score = 30.3 bits (69), Expect = 1.2
Identities = 15/81 (18%), Positives = 34/81 (41%), Gaps = 9/81 (11%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNKVK--------PVHIIFYRDGVSEGQ 52
+E E+ ++ ++ +K+ E K K K K+ K P ++ + G S G
Sbjct: 511 DESEKTKESREAIEKEFEPLLNWMKDKALKDKIEKAVVSQRLTESPCALVASQYGWS-GN 569
Query: 53 FQAVMRRCGPCSNRSVAGLSY 73
+ +M+ + + ++ Y
Sbjct: 570 MERIMKAQAYQTGKDISTNYY 590
>1tzy_B Histone H2B; histone-fold, tetramer-dimer-dimer, DNA binding
protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB:
1eqz_B 1hq3_B 2aro_B 2hio_B 3c9k_B 3azg_D 3a6n_D 3an2_D
3av1_D 3av2_D 3ayw_D 3aze_D 3azf_D 3afa_D 3azh_D 3azi_D
3azj_D 3azk_D 3azl_D 3azm_D ...
Length = 126
Score = 29.0 bits (64), Expect = 1.3
Identities = 13/33 (39%), Positives = 15/33 (45%)
Query: 3 EEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNK 35
E KK K+ K QKK KK+KK K
Sbjct: 3 EPAKSAPAPKKGSKKAVTKTQKKGDKKRKKSRK 35
Score = 27.4 bits (60), Expect = 3.9
Identities = 10/42 (23%), Positives = 20/42 (47%)
Query: 4 EEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNKVKPVHIIFYR 45
E + KK ++ K +K+ KK+K ++ + I Y+
Sbjct: 3 EPAKSAPAPKKGSKKAVTKTQKKGDKKRKKSRKESYSIYVYK 44
Score = 26.7 bits (58), Expect = 8.7
Identities = 10/31 (32%), Positives = 15/31 (48%)
Query: 2 EEEEDEKKKKKKKKKEEEEKKQKKQKKKKKK 32
E + KK KK + ++K KK+KK
Sbjct: 3 EPAKSAPAPKKGSKKAVTKTQKKGDKKRKKS 33
>2yew_A Capsid protein, coat protein; alphavirus, molecular dynamics;
5.00A {Barmah forest virus}
Length = 253
Score = 29.6 bits (66), Expect = 1.3
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 8 KKKKKKKKKEEEEKKQKKQKKKKKK 32
KK K K+ ++ K+ QKKK K
Sbjct: 67 KKTPPPKPKKTQKPKKPTQKKKSKP 91
>1a31_A Protein (topoisomerase I); topoisomerase I/DNA, DNA, isomerase/DNA
complex; HET: DNA 5IU PTR; 2.10A {Homo sapiens} SCOP:
d.163.1.2 e.15.1.1 PDB: 1k4t_A* 1k4s_A* 1sc7_A* 1t8i_A*
1tl8_A* 1seu_A* 1a35_A* 1a36_A* 1r49_A* 1rrj_A* 1nh3_A*
1lpq_A* 1rr8_C* 1ej9_A*
Length = 591
Score = 30.1 bits (67), Expect = 1.4
Identities = 6/26 (23%), Positives = 16/26 (61%)
Query: 7 EKKKKKKKKKEEEEKKQKKQKKKKKK 32
+ + + +K+ +EEK + K++ +K
Sbjct: 136 KAQTEARKQMSKEEKLKIKEENEKLL 161
Score = 29.0 bits (64), Expect = 3.1
Identities = 7/27 (25%), Positives = 16/27 (59%)
Query: 6 DEKKKKKKKKKEEEEKKQKKQKKKKKK 32
+ + +K+ +EE+ K K++ +K K
Sbjct: 136 KAQTEARKQMSKEEKLKIKEENEKLLK 162
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP
hydrolysis, GDP, GMP, dynamin related, large GTPase
family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens}
SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A*
2bc9_A* 2d4h_A*
Length = 592
Score = 29.9 bits (66), Expect = 1.5
Identities = 7/37 (18%), Positives = 21/37 (56%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNKVK 37
+E+E K +++++ +E QK+ + K ++ ++
Sbjct: 544 KEQERTLALKLQEQEQLLKEGFQKESRIMKNEIQDLQ 580
>3u5e_P L20A, YL17, 60S ribosomal protein L17-A; translation, ribosome,
ribosomal R ribosomal protein, STM1, eukaryotic
ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_I
2ww9_I 2wwb_I 3o5h_Q 3o58_Q 3u5i_P 1s1i_N 3izc_V 3izs_V
3jyw_N
Length = 184
Score = 29.1 bits (65), Expect = 1.6
Identities = 5/29 (17%), Positives = 14/29 (48%)
Query: 7 EKKKKKKKKKEEEEKKQKKQKKKKKKVNK 35
EK++ K E++ + +++ + K
Sbjct: 152 EKEEAVAKAAEKKVVRLTSRQRGRIAAQK 180
Score = 28.8 bits (64), Expect = 1.9
Identities = 7/32 (21%), Positives = 16/32 (50%)
Query: 2 EEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKV 33
E+E+ K +KK +Q+ + +K++
Sbjct: 151 TEKEEAVAKAAEKKVVRLTSRQRGRIAAQKRI 182
Score = 27.6 bits (61), Expect = 5.1
Identities = 7/30 (23%), Positives = 15/30 (50%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKK 30
E+EE K +KK + ++ + +K+
Sbjct: 152 EKEEAVAKAAEKKVVRLTSRQRGRIAAQKR 181
Score = 27.6 bits (61), Expect = 5.5
Identities = 7/31 (22%), Positives = 15/31 (48%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKK 31
E+EE K +KK +++ + +K+
Sbjct: 151 TEKEEAVAKAAEKKVVRLTSRQRGRIAAQKR 181
Score = 27.2 bits (60), Expect = 6.3
Identities = 2/33 (6%), Positives = 15/33 (45%)
Query: 5 EDEKKKKKKKKKEEEEKKQKKQKKKKKKVNKVK 37
++++ K +++ + +Q+ + ++
Sbjct: 151 TEKEEAVAKAAEKKVVRLTSRQRGRIAAQKRIA 183
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo
sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A
Length = 323
Score = 29.6 bits (66), Expect = 1.7
Identities = 8/30 (26%), Positives = 16/30 (53%)
Query: 3 EEEDEKKKKKKKKKEEEEKKQKKQKKKKKK 32
E KK+K E+++ KK K ++++
Sbjct: 284 ELALNVITKKRKGYEDDDYVSKKSKHEEEE 313
>4e0t_A Cyclic dipeptide N-prenyltransferase; PT-fold,
C(3)B-prenyltransferase; 2.25A {Aspergillus fumigatus}
PDB: 4e0u_A*
Length = 428
Score = 29.7 bits (66), Expect = 2.0
Identities = 13/75 (17%), Positives = 25/75 (33%)
Query: 280 THPTDLDFYLVSHQSIQGTARPTKYYRLWDEYNLTDDETEEMTYYLCHLFSRCTRSVSYP 339
H + SHQS + Y+ L D + + +++ + ++ Y
Sbjct: 4 HHHSSGLVPRGSHQSQAPIPKDIAYHTLTKALLFPDIDQYQHWHHVAPMLAKMLVDGKYS 63
Query: 340 APTYYAHLAAFRGRV 354
Y +L F V
Sbjct: 64 IHQQYEYLCLFAQLV 78
>2xzm_8 RPS25E,; ribosome, translation; 3.93A {Tetrahymena thermophila}
PDB: 2xzn_8
Length = 143
Score = 28.6 bits (63), Expect = 2.2
Identities = 10/30 (33%), Positives = 14/30 (46%)
Query: 8 KKKKKKKKKEEEEKKQKKQKKKKKKVNKVK 37
+KK K+ + + KK KKK K K
Sbjct: 7 AGQKKTKEAIAKAAQAKKGGKKKWTKGKAK 36
Score = 28.2 bits (62), Expect = 2.3
Identities = 11/29 (37%), Positives = 14/29 (48%)
Query: 9 KKKKKKKKEEEEKKQKKQKKKKKKVNKVK 37
+KK KE K + +K KKK K K
Sbjct: 6 AAGQKKTKEAIAKAAQAKKGGKKKWTKGK 34
Score = 27.4 bits (60), Expect = 4.2
Identities = 10/28 (35%), Positives = 14/28 (50%)
Query: 6 DEKKKKKKKKKEEEEKKQKKQKKKKKKV 33
+KK K+ K + KK K+K K K
Sbjct: 8 GQKKTKEAIAKAAQAKKGGKKKWTKGKA 35
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea,
helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16
c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Length = 1054
Score = 29.7 bits (67), Expect = 2.3
Identities = 3/37 (8%), Positives = 17/37 (45%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNKVK 37
+ +E +++K ++ + + +++ + V+
Sbjct: 726 DRFQESRERRKIAIVRDFDLVLEHDEEEFDLTIKLVE 762
>2zkr_n 60S ribosomal protein L5; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 297
Score = 29.2 bits (65), Expect = 2.3
Identities = 8/30 (26%), Positives = 16/30 (53%)
Query: 2 EEEEDEKKKKKKKKKEEEEKKQKKQKKKKK 31
++E +KK+ + K +KK + +KK
Sbjct: 257 PKKEVKKKRWNRPKMSLAQKKDRVAQKKAS 286
>1wgs_A MYST histone acetyltransferase 1; tudor domain, MYST family, struct
genomics, riken structural genomics/proteomics
initiative; NMR {Mus musculus} SCOP: b.34.13.3
Length = 133
Score = 28.2 bits (62), Expect = 2.4
Identities = 8/40 (20%), Positives = 22/40 (55%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNKVKPVH 40
+ +++ +K + ++ E K + QK+K ++N V+ +
Sbjct: 75 DAVQKNSEKYLSELAEQPERKITRNQKRKHDEINHVQKTY 114
>3iz5_D 60S ribosomal protein L4 (L4P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_D
Length = 405
Score = 29.0 bits (64), Expect = 2.8
Identities = 9/51 (17%), Positives = 22/51 (43%)
Query: 3 EEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNKVKPVHIIFYRDGVSEGQF 53
+ + + K +E+ K+ K ++ KVK +Y+ +S+ +
Sbjct: 341 RKMATLAEAARIKARKEKLDSKRTKLSPEEAAKVKAAGKAWYKTMISDSDY 391
>2nqb_D Histone H2B; nucleosome, NCP, chromatin, structural protein/DNA
complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_D*
Length = 123
Score = 27.7 bits (61), Expect = 3.1
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 7 EKKKKKKKKKEEEEKKQKKQKKKKKKVNK 35
+ K KK + +K K KKKK+ K
Sbjct: 4 KTSGKAAKKAGKAQKNITKTDKKKKRKRK 32
Score = 26.6 bits (58), Expect = 6.8
Identities = 11/39 (28%), Positives = 16/39 (41%)
Query: 7 EKKKKKKKKKEEEEKKQKKQKKKKKKVNKVKPVHIIFYR 45
K K KK + +K + KKKK + + I Y
Sbjct: 3 PKTSGKAAKKAGKAQKNITKTDKKKKRKRKESYAIYIYT 41
>3peh_A Endoplasmin homolog; structural genomics, structural genomics
consortium, SGC, HE protein, chaperone, ATP binding;
HET: IBD; 2.75A {Plasmodium falciparum 3D7} PDB: 3pej_A*
Length = 281
Score = 28.7 bits (65), Expect = 3.2
Identities = 8/33 (24%), Positives = 13/33 (39%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKV 33
++ K EE + KK + +KKV
Sbjct: 242 IAKDMVNDPNYDSVKVEETDDPNKKTRTVEKKV 274
>4a17_T RPL24, 60S ribosomal protein L21; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB:
4a1a_T 4a1c_T 4a1e_T
Length = 158
Score = 27.8 bits (61), Expect = 3.8
Identities = 9/35 (25%), Positives = 16/35 (45%)
Query: 3 EEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNKVK 37
E + +K +KK+ + + + K K KK K
Sbjct: 113 ELKQKKANDIEKKRADRKLQGKDVKAAKKAETKKT 147
Score = 27.4 bits (60), Expect = 4.9
Identities = 7/38 (18%), Positives = 16/38 (42%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNKVKP 38
+ +K + +K +E ++KK +KK+
Sbjct: 97 NLDASHKKAEAEKAVRELKQKKANDIEKKRADRKLQGK 134
Score = 27.4 bits (60), Expect = 5.7
Identities = 10/32 (31%), Positives = 15/32 (46%)
Query: 7 EKKKKKKKKKEEEEKKQKKQKKKKKKVNKVKP 38
E K+KK E++ +K Q K K K +
Sbjct: 113 ELKQKKANDIEKKRADRKLQGKDVKAAKKAET 144
Score = 26.7 bits (58), Expect = 8.7
Identities = 8/32 (25%), Positives = 15/32 (46%)
Query: 8 KKKKKKKKKEEEEKKQKKQKKKKKKVNKVKPV 39
+ K+KK E+++ +K + K K K
Sbjct: 113 ELKQKKANDIEKKRADRKLQGKDVKAAKKAET 144
>4a17_Q RPL17, 60S ribosomal protein L21; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB:
4a1a_Q 4a1c_Q 4a1e_Q
Length = 183
Score = 28.0 bits (62), Expect = 3.9
Identities = 8/28 (28%), Positives = 11/28 (39%)
Query: 10 KKKKKKKEEEEKKQKKQKKKKKKVNKVK 37
K +KE + KK K KK +
Sbjct: 155 VAAKVRKEAPKDAAKKVPKTKKGKLAIG 182
Score = 27.6 bits (61), Expect = 5.1
Identities = 7/26 (26%), Positives = 13/26 (50%)
Query: 7 EKKKKKKKKKEEEEKKQKKQKKKKKK 32
E K +K+ ++ K+ + KK K
Sbjct: 154 EVAAKVRKEAPKDAAKKVPKTKKGKL 179
>4ayb_Q DNA-directed RNA polymerase; transferase, multi-subunit,
transcription; 3.20A {Sulfolobus shibatae} PDB: 2wb1_J
4b1o_Q 4b1p_J 2y0s_J 2waq_Q
Length = 104
Score = 27.2 bits (59), Expect = 4.1
Identities = 13/33 (39%), Positives = 21/33 (63%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKV 33
+ ++ EK+ ++K K+ KK KK KKK+K V
Sbjct: 70 DNYKDYEKRDSRRKAKKAASKKVKKTKKKEKSV 102
>2cs1_A PMS1 protein homolog 1; DNA mismatch repair protein PMS1,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 92
Score = 26.6 bits (59), Expect = 4.3
Identities = 7/39 (17%), Positives = 17/39 (43%), Gaps = 5/39 (12%)
Query: 5 EDEKKK-----KKKKKKEEEEKKQKKQKKKKKKVNKVKP 38
E+EK K K ++ + K+ +++ + + P
Sbjct: 51 EEEKLKYEEKATKDLERYNSQMKRAIEQESQMSLKDSGP 89
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear
protein complex, chromatin remodeling nucleosome
remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Length = 374
Score = 28.2 bits (62), Expect = 4.4
Identities = 8/35 (22%), Positives = 16/35 (45%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNK 35
E+E D + KK K ++ ++ +K N+
Sbjct: 331 EKENVDGVESKKAKIEDTSNVGTEQLVAEKIPENE 365
>3hkz_Y DNA-directed RNA polymerase subunit 13; archaea, metal-binding,
nucleotidyltransferase, transcription, transferase,
zinc, zinc-finger; 3.40A {Sulfolobus solfataricus}
Length = 104
Score = 27.2 bits (59), Expect = 4.5
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKV 33
+ +E EK+ ++K K+ KK KK KKK+K V
Sbjct: 70 DNYKEYEKRDSRRKAKKAVSKKVKKTKKKEKSV 102
>2zd7_A VPS75, vacuolar protein sorting-associated protein 75; histone
chaperone, VPS75, NAP1, nucleus, phosphoprotein; 1.85A
{Saccharomyces cerevisiae} PDB: 3q66_A* 3q68_A* 3c9d_A
3c9b_A 3q33_B* 3q35_B* 3dm7_A
Length = 264
Score = 28.1 bits (62), Expect = 4.8
Identities = 7/27 (25%), Positives = 13/27 (48%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQK 27
+ E++D + +EE KK+K
Sbjct: 237 DSEDDDGSLGEVDLPLSDEEPSSKKRK 263
Score = 27.8 bits (61), Expect = 5.6
Identities = 5/33 (15%), Positives = 12/33 (36%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKV 33
+ D + + + ++ KK+KV
Sbjct: 232 LSADGDSEDDDGSLGEVDLPLSDEEPSSKKRKV 264
>3u5e_D 60S ribosomal protein L5; translation, ribosome, ribosomal R
ribosomal protein, STM1, eukaryotic ribosome; 3.00A
{Saccharomyces cerevisiae} PDB: 3u5i_D 3izc_Q 3izs_Q
3o58_E 3o5h_E 3jyw_E 1s1i_E
Length = 297
Score = 28.1 bits (62), Expect = 4.8
Identities = 8/31 (25%), Positives = 17/31 (54%)
Query: 5 EDEKKKKKKKKKEEEEKKQKKQKKKKKKVNK 35
D K +KK +E+ + +K ++ K++K
Sbjct: 249 ADPAFKPTEKKFTKEQYAAESKKYRQTKLSK 279
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE;
1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Length = 260
Score = 28.1 bits (62), Expect = 5.2
Identities = 4/28 (14%), Positives = 11/28 (39%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKK 28
+E ++ K+ K E ++ +
Sbjct: 231 GSDERVKEFKQSLIKYMETQRSYTALAE 258
Score = 27.7 bits (61), Expect = 6.5
Identities = 5/29 (17%), Positives = 11/29 (37%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKK 29
+E K+ K+ K E ++ +
Sbjct: 230 VGSDERVKEFKQSLIKYMETQRSYTALAE 258
Score = 27.7 bits (61), Expect = 7.0
Identities = 4/33 (12%), Positives = 11/33 (33%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKV 33
+ ++ K+ K+ K + Q+
Sbjct: 225 SKCGPVGSDERVKEFKQSLIKYMETQRSYTALA 257
>3izc_Z 60S ribosomal protein RPL24 (L24E); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_Z
3o58_V 3o5h_V 3u5e_W 3u5i_W 1s1i_S 2x7n_D
Length = 155
Score = 27.4 bits (60), Expect = 5.4
Identities = 9/36 (25%), Positives = 18/36 (50%)
Query: 2 EEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNKVK 37
E+++ EK +K +K + + K K++ K K
Sbjct: 114 EKKKAEKAARKAEKAKSAGTQSSKFSKQQAKGAFQK 149
Score = 26.6 bits (58), Expect = 9.1
Identities = 8/32 (25%), Positives = 18/32 (56%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKK 32
+ E K +++K K +EKK+ ++ +K +
Sbjct: 95 SLKPEVRKANREEKLKANKEKKKAEKAARKAE 126
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1
PDB: 2tma_A 2w49_A 2w4u_A
Length = 284
Score = 27.7 bits (61), Expect = 5.8
Identities = 8/36 (22%), Positives = 17/36 (47%)
Query: 2 EEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNKVK 37
EEE K + + EK +K+ K ++++ +
Sbjct: 194 EEEIKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLS 229
Score = 27.3 bits (60), Expect = 9.8
Identities = 8/37 (21%), Positives = 17/37 (45%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNKVK 37
E+E +KK K + E ++ + + ++K K
Sbjct: 40 EDELVSLQKKLKATEDELDKYSEALKDAQEKLELAEK 76
Score = 27.3 bits (60), Expect = 9.9
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 2 EEEEDEKKKKKKKKKEEEEKKQKKQKKKKK 31
+E E +KK + + K+ E++ QKK K
Sbjct: 23 DEAEADKKAAEDRSKQLEDELVSLQKKLKA 52
>3b4n_A Endo-pectate lyase; pectin, galacturonic acid, right-handed
parallel beta helix fold; 1.45A {Erwinia chrysanthemi}
PDB: 3b8y_A* 3b90_A
Length = 344
Score = 27.9 bits (61), Expect = 6.4
Identities = 15/61 (24%), Positives = 23/61 (37%), Gaps = 2/61 (3%)
Query: 41 IIFYRDGVSEGQFQAVMRRCGPCSNRSVAGLSYTIFTGAEISAIKRACQGVEANYNPKVT 100
+ + G+ + R CG CSN G + T A ++ + GV NY T
Sbjct: 235 TVVKGNFTLTGEHGKLWRSCGDCSNNG--GPRFLTVTSATVNGTIDSIAGVNRNYGDVAT 292
Query: 101 F 101
Sbjct: 293 I 293
>3qwe_A GMIP, GEM-interacting protein; structural genomics consortium, SGC,
protein binding; 2.40A {Homo sapiens}
Length = 279
Score = 27.9 bits (61), Expect = 6.4
Identities = 8/36 (22%), Positives = 20/36 (55%)
Query: 2 EEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNKVK 37
+ E +K +K+ KE+ K+QK+ + + + + +
Sbjct: 104 AAKRTEIEKWRKEFKEQWMKEQKRMNEAVQALRRAQ 139
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4
chimera; alpha-helical coiled coil, disorder, salt
links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB:
1nkn_A 3bat_A
Length = 89
Score = 26.1 bits (57), Expect = 6.5
Identities = 8/28 (28%), Positives = 17/28 (60%)
Query: 3 EEEDEKKKKKKKKKEEEEKKQKKQKKKK 30
+E+E K++ K+ + +E K ++ KK
Sbjct: 11 RQEEEMKEQLKQMDKMKEDLAKTERIKK 38
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3
ligase, ubiquitinylation, TPR, heat-shock protein
complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Length = 281
Score = 27.6 bits (61), Expect = 6.8
Identities = 5/37 (13%), Positives = 17/37 (45%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNKVK 37
++ + KKK+ EE++ ++ + + ++
Sbjct: 111 DDIPSALRIAKKKRWNSIEERRIHQESELHSYLTRLI 147
>4a17_I RPL13A, 60S ribosomal protein L13A; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB:
4a1a_I 4a1c_I 4a1e_I
Length = 198
Score = 27.2 bits (60), Expect = 6.8
Identities = 7/40 (17%), Positives = 19/40 (47%), Gaps = 5/40 (12%)
Query: 2 EEEEDEKKKK-----KKKKKEEEEKKQKKQKKKKKKVNKV 36
E+ E++++ + KK K+ + +K++ K +
Sbjct: 153 EKLEEKRRARAKTYHDKKVKQADARKKELAAPALKAIKDK 192
>3iz5_Q 60S ribosomal protein L5 (L18P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_Q
Length = 304
Score = 27.7 bits (61), Expect = 6.8
Identities = 6/31 (19%), Positives = 13/31 (41%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKK 31
++E K+ KK E++K ++
Sbjct: 257 TKKEPATHKRYNLKKLTYEQRKASLVERLNA 287
>2ztj_A Homocitrate synthase; (beta/alpha)8 TIM barrel, substrate complex,
amino-acid BIOS lysine biosynthesis, transferase; HET:
AKG; 1.80A {Thermus thermophilus} PDB: 2ztk_A* 2zyf_A*
3a9i_A*
Length = 382
Score = 27.9 bits (63), Expect = 6.9
Identities = 10/69 (14%), Positives = 13/69 (18%), Gaps = 19/69 (27%)
Query: 49 SEGQFQAVMRRCGPCSNRSVAGLSYTIFTGAEISAIKRACQGVEANYNPKVTFLVVQKRH 108
S + V + A K A VE +
Sbjct: 50 SPQSRKDAEVLASLGLKAKVVTHIQ-----CRLDAAKVA---VETG----------VQGI 91
Query: 109 HTRFFPTSP 117
F TS
Sbjct: 92 DL-LFGTSK 99
>4f61_I Stathmin-like domain R4; alpha-tubulin, beta-tubulin, GTPase,
microtubule, RB3, stath tubulin, cell cycle; HET: GTP
GDP; 4.17A {Artificial gene}
Length = 240
Score = 27.2 bits (59), Expect = 7.7
Identities = 4/37 (10%), Positives = 18/37 (48%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNKVK 37
+E E ++ +E+++ ++ +++ ++ N
Sbjct: 106 KENREAHFAAMLERLQEKDKHAEEVRQRAIEENNNWI 142
Score = 27.2 bits (59), Expect = 9.2
Identities = 6/32 (18%), Positives = 17/32 (53%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKK 32
+E E ++ +E+++ ++ +K K+ K
Sbjct: 208 KENREAHFAAMLERLQEKDKHAEEVRKNKELK 239
>4a17_C RPL4, ribosomal protein L3; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB:
4a1a_C 4a1c_C 4a1e_C
Length = 410
Score = 27.5 bits (60), Expect = 7.7
Identities = 6/31 (19%), Positives = 10/31 (32%)
Query: 2 EEEEDEKKKKKKKKKEEEEKKQKKQKKKKKK 32
E K++ K + K KK +
Sbjct: 348 AEASKAKRQATLKANRKAAKTHKKGSQAWIA 378
>3izc_G 60S ribosomal protein RPL6 (L6E); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_G
3o58_F 3o5h_F 3u5e_E 3u5i_E
Length = 176
Score = 26.9 bits (59), Expect = 8.1
Identities = 10/34 (29%), Positives = 16/34 (47%)
Query: 2 EEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNK 35
E K+K KK+K+E ++Q K+ K
Sbjct: 102 NVEYFAKEKLTKKEKKEANLFPEQQNKEIKAERV 135
>2g3v_A CAG pathogenicity island protein 13; pathogenicity island, type
IV secretion system, unknown function; 2.30A
{Helicobacter pylori}
Length = 208
Score = 27.0 bits (59), Expect = 9.0
Identities = 14/53 (26%), Positives = 29/53 (54%)
Query: 6 DEKKKKKKKKKEEEEKKQKKQKKKKKKVNKVKPVHIIFYRDGVSEGQFQAVMR 58
+ K KK+K + +E + +KKK ++++K +H F + ++G V+R
Sbjct: 15 NSKDKKEKLIESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLR 67
>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics,
protein initiative; 2.04A {Lactobacillus salivarius}
Length = 177
Score = 26.9 bits (60), Expect = 9.0
Identities = 4/30 (13%), Positives = 10/30 (33%), Gaps = 6/30 (20%)
Query: 1 EEEEED------EKKKKKKKKKEEEEKKQK 24
++ + + EK + K+ K
Sbjct: 112 DKLQVEKGVTLAEKLANRYSHDSYRNKQNK 141
>3iz5_Z 60S ribosomal protein L24 (L24E); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_Z
Length = 162
Score = 26.6 bits (58), Expect = 9.4
Identities = 8/32 (25%), Positives = 17/32 (53%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKK 32
E+ E ++ +E +E+ +K + +KK K
Sbjct: 98 SEKPEVRDAAREAALREIKERIKKTKDEKKAK 129
>1j1d_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding
protein, EF- hand, coiled-coil, contractIle protein;
2.61A {Homo sapiens} SCOP: h.1.25.2
Length = 133
Score = 26.4 bits (58), Expect = 9.5
Identities = 13/71 (18%), Positives = 28/71 (39%), Gaps = 19/71 (26%)
Query: 3 EEEDEKKKK-----KKKKKE----------EEEKKQKKQKKKKKKVNKVKPVHIIFYRDG 47
E +KK K K + K E E ++++ +K + + +P+ + G
Sbjct: 2 EPHAKKKSKISASRKLQLKTLLLQIAKQELEREAEERRGEKGRALSTRAQPLEL----AG 57
Query: 48 VSEGQFQAVMR 58
+ + Q + R
Sbjct: 58 LGFAELQDLAR 68
>1vq8_G Acidic ribosomal protein P0 homolog; ribosome 50S,
protein-protein complex, RNA-RNA complex, PROT complex,
peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU
SPS; 2.20A {Haloarcula marismortui} SCOP: j.84.1.1 PDB:
1k73_I* 1k8a_I* 1k9m_I* 1kc8_I* 1kd1_I* 1kqs_G* 1m1k_I*
1m90_I* 1n8r_I* 1nji_I* 1q7y_I* 1q81_I* 1q82_I* 1q86_I*
1qvf_G 1qvg_G 1s72_G* 1vq4_G* 1vq5_G* 1vq6_G* ...
Length = 348
Score = 27.1 bits (59), Expect = 9.5
Identities = 11/51 (21%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
Query: 9 KKKKKKKKEEEEKKQKKQKKKKKKVNKVKPVHIIFYRDGVSEGQFQAVMRR 59
+ ++K + E KQ++ + + + V ++ G+ Q Q MRR
Sbjct: 3 AESERKTETIPEWKQEEVDAIVEMIESYESVGVVNI-AGIPSRQLQD-MRR 51
>2hz7_A Glutaminyl-tRNA synthetase; rossmann fold, GLNRS core, class I
aminoacyl-tRNA synthetase, ligase; 2.30A {Deinococcus
radiodurans}
Length = 851
Score = 27.5 bits (61), Expect = 9.7
Identities = 5/27 (18%), Positives = 12/27 (44%)
Query: 6 DEKKKKKKKKKEEEEKKQKKQKKKKKK 32
D K+ +++ E K++ K +
Sbjct: 629 DTWGKQGGGTQQKAEGKKRPSTKGRGP 655
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.133 0.392
Gapped
Lambda K H
0.267 0.0519 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,899,862
Number of extensions: 350801
Number of successful extensions: 2865
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2457
Number of HSP's successfully gapped: 349
Length of query: 387
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 292
Effective length of database: 4,049,298
Effective search space: 1182395016
Effective search space used: 1182395016
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.6 bits)