RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy6533
(387 letters)
>d1yvua2 c.55.3.10 (A:315-706) Argonaute homologue Aq_1447 {Aquifex
aeolicus [TaxId: 63363]}
Length = 392
Score = 168 bits (427), Expect = 4e-49
Identities = 29/172 (16%), Positives = 56/172 (32%), Gaps = 27/172 (15%)
Query: 195 NKVKPVHIIFYRDGVSEGQFQAVMSAEISAIKRACQGVEANYNPKVTFLVVQKRHHTRFF 254
K I+ +RDG E++A K+ + Y + L + KR++ RFF
Sbjct: 245 GFKKGSKIVVHRDGRLYRD-------EVAAFKKYGE----LYGYSLELLEIIKRNNPRFF 293
Query: 255 PTSPSEGDGSRNNNVRPGTIVDTTITHPTDLDFYLVSHQSIQGTARPTKYYRLWDEYNLT 314
N G D +Q +GT +P K +++ E +
Sbjct: 294 S----------NEKFIKGYFY----KLSEDSVILATYNQVYEGTHQPIKVRKVYGELPV- 338
Query: 315 DDETEEMTYYLCHLFSRCTRSVSYPAPTYYAHLAAFRGRVYIKNRHLDMNNL 366
+ L + + + PA +Y+ I+ + + +
Sbjct: 339 -EVLCSQILSLTLMNYSSFQPIKLPATVHYSDKITKLMLRGIEPIKKEGDIM 389
Score = 74.9 bits (184), Expect = 2e-15
Identities = 22/143 (15%), Positives = 38/143 (26%), Gaps = 45/143 (31%)
Query: 13 KKKKEEEEKKQKKQKKKKKKVNKVKPVHIIFYRDGVSEGQFQAVMRRCGPCSNRSVAGLS 72
++ EK +K+ K I+ +RDG
Sbjct: 224 AFGEKLTEKAIGDVFSLLEKLGFKKGSKIVVHRDGRLYRD-------------------- 263
Query: 73 YTIFTGAEISAIKRACQGVEANYNPKVTFLVVQKRHHTRFFPTSPSEGDGSRNNNVRPGT 132
E++A K+ + Y + L + KR++ RFF N G
Sbjct: 264 -------EVAAFKKYGE----LYGYSLELLEIIKRNNPRFFS----------NEKFIKGY 302
Query: 133 IVDTTITHPTDLDFYLVSHQSIQ 155
D +Q +
Sbjct: 303 FY----KLSEDSVILATYNQVYE 321
>d1w9ha1 c.55.3.10 (A:93-408) Hypothetical protein AF1318
{Archaeoglobus fulgidus [TaxId: 2234]}
Length = 316
Score = 137 bits (346), Expect = 4e-38
Identities = 24/166 (14%), Positives = 45/166 (27%), Gaps = 18/166 (10%)
Query: 195 NKVKPVHIIFYRDGVSEGQFQAVMSAEISAIKRACQGVEANYNPKVTFLVVQKRHHTRFF 254
+ + G ++ + + + K L + + H
Sbjct: 150 PDWDVEKLTLHVSGKRPKMKDGETKILKETVEELKKQEMVSRDVKYAILHLNETHPFWVM 209
Query: 255 PTSPSEGDGSRNNNVRPGTIVDTTITHPTDLDFYLVSHQSIQGT-----ARPTKYYRLWD 309
D + + GT V ++ L L + G +P + D
Sbjct: 210 G------DPNNRFHPYEGTKVK--LSSKRYLLTLLQPYLKRNGLEMVTPIKPLSVEIVSD 261
Query: 310 EYNLTD-----DETEEMTYYLCHLFSRCTRSVSYPAPTYYAHLAAF 350
+ + E + YYL + R RS + P Y L A
Sbjct: 262 NWTSEEYYHNVHEILDEIYYLSKMNWRGFRSRNLPVTVNYPKLVAG 307
Score = 71.6 bits (175), Expect = 1e-14
Identities = 12/129 (9%), Positives = 27/129 (20%), Gaps = 28/129 (21%)
Query: 27 KKKKKKVNKVKPVHIIFYRDGVSEGQFQAVMRRCGPCSNRSVAGLSYTIFTGAEISAIKR 86
KK + + G + ++
Sbjct: 143 YGFKKSNPDWDVEKLTLHVSGKRPKMKDGETK--------------------ILKETVEE 182
Query: 87 ACQGVEANYNPKVTFLVVQKRHHTRFFPTSPSEGDGSRNNNVRPGTIVDTTITHPTDLDF 146
+ + + K L + + H D + + GT V ++ L
Sbjct: 183 LKKQEMVSRDVKYAILHLNETHPFWVMG------DPNNRFHPYEGTKVK--LSSKRYLLT 234
Query: 147 YLVSHQSIQ 155
L +
Sbjct: 235 LLQPYLKRN 243
>d1u04a2 c.55.3.10 (A:324-770) Argonaute homologue PF0537
{Pyrococcus furiosus [TaxId: 2261]}
Length = 447
Score = 136 bits (343), Expect = 1e-36
Identities = 30/176 (17%), Positives = 50/176 (28%), Gaps = 40/176 (22%)
Query: 193 YVNKVKPVHIIFYRDGVSEGQFQAVMSAEISAIKRACQGVEANYNPKVTFLVVQKRHHTR 252
+ K+ I+ RDG E +K + ++ +V + V K H R
Sbjct: 291 FNIKLDNKKILLLRDGRITNN-------EEEGLKYISE----MFDIEVVTMDVIKNHPVR 339
Query: 253 FFPTSPSEGDGSRNNNVRPGTIVDTTITHPTDLDFYLVSHQSIQGTARPTKYYRLWD--- 309
F + + YL+ H+ Q P
Sbjct: 340 AF--------------------ANMKMYFNLGGAIYLIPHKLKQAKGTPIPIKLAKKRII 379
Query: 310 -----EYNLTDDETEEMTYYLCHL-FSRCTRSVSYPAPTYYAHLAAFRGRVYIKNR 359
E + + L L + + + PAP +YAH A R K +
Sbjct: 380 KNGKVEKQSITRQDVLDIFILTRLNYGSISADMRLPAPVHYAHKFANAIRNEWKIK 435
Score = 74.2 bits (182), Expect = 3e-15
Identities = 20/146 (13%), Positives = 40/146 (27%), Gaps = 51/146 (34%)
Query: 10 KKKKKKKEEEEKKQKKQKKKKKKVNKVKPVHIIFYRDGVSEGQFQAVMRRCGPCSNRSVA 69
+++ + + E ++ K K+ K+ I+ RDG
Sbjct: 269 EQRGESVDMNEFFKEMVDKFKEFNIKLDNKKILLLRDGRITNN----------------- 311
Query: 70 GLSYTIFTGAEISAIKRACQGVEANYNPKVTFLVVQKRHHTRFFPTSPSEGDGSRNNNVR 129
E +K + ++ +V + V K H R F
Sbjct: 312 ----------EEEGLKYISE----MFDIEVVTMDVIKNHPVRAF---------------- 341
Query: 130 PGTIVDTTITHPTDLDFYLVSHQSIQ 155
+ + YL+ H+ Q
Sbjct: 342 ----ANMKMYFNLGGAIYLIPHKLKQ 363
>d1v9da_ a.207.1.1 (A:) Diaphanous protein homolog 1, dia1 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 332
Score = 33.4 bits (76), Expect = 0.043
Identities = 9/31 (29%), Positives = 18/31 (58%)
Query: 7 EKKKKKKKKKEEEEKKQKKQKKKKKKVNKVK 37
+ K+ +K+ E E+K ++ K K+K K +
Sbjct: 301 LQAVKENQKRRETEEKMRRAKLAKEKAEKER 331
Score = 30.7 bits (69), Expect = 0.31
Identities = 7/26 (26%), Positives = 17/26 (65%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQ 26
E ++ E ++K ++ K +EK +K++
Sbjct: 306 ENQKRRETEEKMRRAKLAKEKAEKER 331
Score = 30.3 bits (68), Expect = 0.36
Identities = 7/29 (24%), Positives = 19/29 (65%)
Query: 8 KKKKKKKKKEEEEKKQKKQKKKKKKVNKV 36
K+ +K+++ EE+ ++ K K+K + ++
Sbjct: 304 VKENQKRRETEEKMRRAKLAKEKAEKERL 332
Score = 29.9 bits (67), Expect = 0.49
Identities = 6/27 (22%), Positives = 18/27 (66%)
Query: 7 EKKKKKKKKKEEEEKKQKKQKKKKKKV 33
E +K+++ +++ K K+K +K+++
Sbjct: 306 ENQKRRETEEKMRRAKLAKEKAEKERL 332
Score = 29.6 bits (66), Expect = 0.62
Identities = 8/27 (29%), Positives = 17/27 (62%)
Query: 6 DEKKKKKKKKKEEEEKKQKKQKKKKKK 32
+ K+ +K++E EEK ++ + K+K
Sbjct: 301 LQAVKENQKRRETEEKMRRAKLAKEKA 327
Score = 29.2 bits (65), Expect = 0.91
Identities = 5/27 (18%), Positives = 18/27 (66%)
Query: 5 EDEKKKKKKKKKEEEEKKQKKQKKKKK 31
++ +K+++ ++K K K++ +K++
Sbjct: 305 KENQKRRETEEKMRRAKLAKEKAEKER 331
Score = 28.0 bits (62), Expect = 2.2
Identities = 5/27 (18%), Positives = 19/27 (70%)
Query: 4 EEDEKKKKKKKKKEEEEKKQKKQKKKK 30
+E++K+++ ++K + ++K +K++
Sbjct: 305 KENQKRRETEEKMRRAKLAKEKAEKER 331
>d1oisa_ e.15.1.1 (A:) Eukaryotic DNA topoisomerase I, N-terminal
DNA-binding fragment {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 223
Score = 32.0 bits (73), Expect = 0.076
Identities = 8/26 (30%), Positives = 19/26 (73%)
Query: 7 EKKKKKKKKKEEEEKKQKKQKKKKKK 32
+ +K++KK+ +EKKQ + +++K +
Sbjct: 102 QLQKEQKKQLTSQEKKQIRLEREKFE 127
Score = 28.5 bits (64), Expect = 1.2
Identities = 6/27 (22%), Positives = 19/27 (70%)
Query: 6 DEKKKKKKKKKEEEEKKQKKQKKKKKK 32
+K++KK+ +E+K+ + +++K ++
Sbjct: 102 QLQKEQKKQLTSQEKKQIRLEREKFEE 128
Score = 25.8 bits (57), Expect = 7.9
Identities = 7/38 (18%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
Query: 3 EEEDEKKK---KKKKKKEEEEKKQKKQKKKKKKVNKVK 37
+ + E+KK ++KK+ E+++ ++ K +++ +
Sbjct: 102 QLQKEQKKQLTSQEKKQIRLEREKFEEDYKFCELDGRR 139
>d1k4ta3 e.15.1.1 (A:201-430) Eukaryotic DNA topoisomerase I,
N-terminal DNA-binding fragment {Human (Homo sapiens)
[TaxId: 9606]}
Length = 230
Score = 31.6 bits (72), Expect = 0.12
Identities = 6/26 (23%), Positives = 16/26 (61%)
Query: 7 EKKKKKKKKKEEEEKKQKKQKKKKKK 32
+ + + +K+ +EEK + K++ +K
Sbjct: 110 KAQTEARKQMSKEEKLKIKEENEKLL 135
Score = 29.3 bits (66), Expect = 0.72
Identities = 7/27 (25%), Positives = 16/27 (59%)
Query: 6 DEKKKKKKKKKEEEEKKQKKQKKKKKK 32
+ + +K+ +EE+ K K++ +K K
Sbjct: 110 KAQTEARKQMSKEEKLKIKEENEKLLK 136
Score = 26.6 bits (59), Expect = 4.8
Identities = 8/38 (21%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
Query: 3 EEEDEKKK---KKKKKKEEEEKKQKKQKKKKKKVNKVK 37
+ + E +K K++K K +EE ++ ++ ++ K
Sbjct: 110 KAQTEARKQMSKEEKLKIKEENEKLLKEYGFCIMDNHK 147
Score = 26.2 bits (58), Expect = 6.6
Identities = 7/28 (25%), Positives = 17/28 (60%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKK 28
+ + E K+ K++K + +E+ +K K+
Sbjct: 110 KAQTEARKQMSKEEKLKIKEENEKLLKE 137
>d1sa0e_ a.137.10.1 (E:) Stathmin 4 {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 138
Score = 30.2 bits (68), Expect = 0.18
Identities = 6/32 (18%), Positives = 17/32 (53%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKK 32
+E E ++ +E+++ ++ +K K+ K
Sbjct: 106 KENREAHLAAMLERLQEKDKHAEEVRKNKELK 137
Score = 30.2 bits (68), Expect = 0.20
Identities = 5/37 (13%), Positives = 18/37 (48%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNKVK 37
+E+ + + K+ ++ ++ ++K K +V+
Sbjct: 95 KEKLAQKMESNKENREAHLAAMLERLQEKDKHAEEVR 131
Score = 29.5 bits (66), Expect = 0.35
Identities = 5/30 (16%), Positives = 15/30 (50%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKK 30
+E + ++ +E++K ++ +K K
Sbjct: 105 NKENREAHLAAMLERLQEKDKHAEEVRKNK 134
Score = 29.5 bits (66), Expect = 0.35
Identities = 7/28 (25%), Positives = 14/28 (50%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKK 28
++ ++K K EE +K K+ K+
Sbjct: 111 AHLAAMLERLQEKDKHAEEVRKNKELKE 138
Score = 27.9 bits (62), Expect = 1.2
Identities = 6/32 (18%), Positives = 14/32 (43%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKK 32
+E E K +K++ E E ++ ++
Sbjct: 60 YQEAELLKHLAEKREHEREVIQKAIEENNNFI 91
Score = 25.6 bits (56), Expect = 7.1
Identities = 5/31 (16%), Positives = 16/31 (51%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKK 31
E ++ ++K++ ++ +K K+ K+
Sbjct: 108 NREAHLAAMLERLQEKDKHAEEVRKNKELKE 138
>d2fgea3 d.185.1.1 (A:272-539) Presequence protease 1, PREP1 {Thale
cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 268
Score = 30.0 bits (67), Expect = 0.37
Identities = 11/44 (25%), Positives = 18/44 (40%), Gaps = 2/44 (4%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQ--KKQKKKKKKVNKVKPVHII 42
EE EE +K K EE+ + + ++ K K P +
Sbjct: 220 EEVEEKNILEKVKAAMTEEDLAELARATEELKLKQETPDPPEAL 263
>d1uw0a_ g.39.1.12 (A:) DNA ligase III {Human (Homo sapiens) [TaxId:
9606]}
Length = 117
Score = 28.8 bits (64), Expect = 0.48
Identities = 10/34 (29%), Positives = 15/34 (44%)
Query: 2 EEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNK 35
EE ED +K++ + + K KKK V
Sbjct: 80 EELEDNEKEQITQHIADLSSKAAGTPKKKAVVQA 113
>d1id2a_ b.6.1.1 (A:) Amicyanin {Paracoccus versutus (Thiobacillus
versutus) [TaxId: 34007]}
Length = 106
Score = 28.1 bits (62), Expect = 0.61
Identities = 9/60 (15%), Positives = 17/60 (28%)
Query: 239 KVTFLVVQKRHHTRFFPTSPSEGDGSRNNNVRPGTIVDTTITHPTDLDFYLVSHQSIQGT 298
V ++ + H F D R + T D++ H ++G
Sbjct: 43 TVYWVNGEVMPHNVAFKKGIVGEDAFRGEMMTKDQAYAITFNEAGSYDYFCTPHPFMRGK 102
>d1xu6a_ g.16.3.1 (A:) Variant surface glycoprotein MITAT 1.2, VSG
221, C-terminal domain {Trypanosoma brucei brucei
[TaxId: 5702]}
Length = 80
Score = 27.2 bits (60), Expect = 0.85
Identities = 8/29 (27%), Positives = 13/29 (44%)
Query: 4 EEDEKKKKKKKKKEEEEKKQKKQKKKKKK 32
++ + KK +EE KK + K K
Sbjct: 42 WHNDAENKKCTLDKEEAKKVADETAKDGK 70
Score = 26.8 bits (59), Expect = 1.1
Identities = 8/32 (25%), Positives = 13/32 (40%), Gaps = 4/32 (12%)
Query: 1 EEEEEDEKK----KKKKKKKEEEEKKQKKQKK 28
+ + KK K++ KK +E K K
Sbjct: 42 WHNDAENKKCTLDKEEAKKVADETAKDGKTGN 73
Score = 25.3 bits (55), Expect = 3.7
Identities = 9/29 (31%), Positives = 12/29 (41%)
Query: 3 EEEDEKKKKKKKKKEEEEKKQKKQKKKKK 31
D + KK KEE +K + K K
Sbjct: 42 WHNDAENKKCTLDKEEAKKVADETAKDGK 70
Score = 24.1 bits (52), Expect = 9.8
Identities = 6/32 (18%), Positives = 11/32 (34%)
Query: 5 EDEKKKKKKKKKEEEEKKQKKQKKKKKKVNKV 36
+ KK ++EE K+ + K
Sbjct: 42 WHNDAENKKCTLDKEEAKKVADETAKDGKTGN 73
>d2vgla_ a.118.1.10 (A:) Adaptin alpha C subunit N-terminal
fragment {Mouse (Mus musculus) [TaxId: 10090]}
Length = 584
Score = 29.4 bits (65), Expect = 0.94
Identities = 12/56 (21%), Positives = 24/56 (42%), Gaps = 2/56 (3%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNKVKPVHIIFYRDGVSEGQFQAV 56
E E + K+ + + + K KKK V K+ + ++ + + G +AV
Sbjct: 19 EAEIKRINKELANIRSKFKGDKALDGYSKKKYVCKLLFIFLLGHD--IDFGHMEAV 72
>d1k4ta1 a.2.8.1 (A:641-712) Eukaryotic DNA topoisomerase I,
dispensable insert domain {Human (Homo sapiens) [TaxId:
9606]}
Length = 72
Score = 27.1 bits (60), Expect = 0.96
Identities = 10/37 (27%), Positives = 18/37 (48%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNKVK 37
+ D K K K ++ K +K + KKK V +++
Sbjct: 19 ADARRDLKSAKADAKVMKDAKTKKVVESKKKAVQRLE 55
>d2ap3a1 a.24.27.1 (A:12-196) Hypothetical protein MW0975 (SA0943)
{Staphylococcus aureus [TaxId: 1280]}
Length = 185
Score = 27.7 bits (60), Expect = 1.9
Identities = 10/38 (26%), Positives = 18/38 (47%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNKVKP 38
+++E K+ K K++EE + KK + K K
Sbjct: 3 DKKEIKAYLKQVDKIKDDEEPIKTVGKKIAELDEKKKK 40
>d1txla_ b.60.1.4 (A:) Hypothetical protein YodA {Escherichia coli
[TaxId: 562]}
Length = 188
Score = 27.4 bits (61), Expect = 2.5
Identities = 9/46 (19%), Positives = 17/46 (36%), Gaps = 2/46 (4%)
Query: 7 EKKKKKKKKKEEEEKKQKKQKKKKKKVNK--VKPVHIIFYRDGVSE 50
+KK K K E K K + ++ + F+R+ +
Sbjct: 51 QKKADADKTKTFAEIKDYYHKGYATDIEMIGIEDGIVEFHRNNETT 96
>d1kvva_ d.201.1.1 (A:) SRP19 {Archaeon Archaeoglobus fulgidus
[TaxId: 2234]}
Length = 104
Score = 26.2 bits (58), Expect = 2.8
Identities = 8/22 (36%), Positives = 17/22 (77%)
Query: 10 KKKKKKKEEEEKKQKKQKKKKK 31
+K + +E++ +++K +KKKKK
Sbjct: 83 RKIAEIREQKREQKKDKKKKKK 104
>d2a9ua1 a.118.23.1 (A:6-139) Ubiquitin carboxyl-terminal hydrolase
8, USH8 {Human (Homo sapiens) [TaxId: 9606]}
Length = 134
Score = 26.4 bits (58), Expect = 3.1
Identities = 9/26 (34%), Positives = 18/26 (69%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQ 26
EE E +K ++K +++E + +QK+Q
Sbjct: 109 EEAEVRKKLEEKDRQEEAQRLQQKRQ 134
>d1u5tb2 a.4.5.54 (B:490-564) Vacuolar protein sorting-associated
protein VPS36 {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 75
Score = 25.7 bits (56), Expect = 3.2
Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 9/44 (20%)
Query: 156 VGILTQCIKEKTVFKMNPATTGNILLKINAKLNGINHYVNKVKP 199
+GIL + ++ N G++L I+ +L+GI +Y N P
Sbjct: 40 LGILMEVLQ-------NCVDEGDLL--IDKQLSGIYYYKNSYWP 74
>d1zroa1 a.264.1.1 (A:8-282) Erythrocyte binding antigen region II
{Plasmodium falciparum [TaxId: 5833]}
Length = 275
Score = 27.3 bits (60), Expect = 3.3
Identities = 6/37 (16%), Positives = 13/37 (35%)
Query: 8 KKKKKKKKKEEEEKKQKKQKKKKKKVNKVKPVHIIFY 44
+ + K E ++ + +K K N + I
Sbjct: 216 RDWIIRSKFEWHTLSKEYETQKVPKENAENYLIKISE 252
>d1v64a_ a.21.1.1 (A:) Nucleolar transcription factor 1 (Upstream
binding factor 1, UBF-1) {Mouse (Mus musculus) [TaxId:
10090]}
Length = 108
Score = 26.1 bits (57), Expect = 3.6
Identities = 4/35 (11%), Positives = 19/35 (54%)
Query: 1 EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNK 35
++++ + + + + EEE+++ ++K ++
Sbjct: 70 KKKDYEVELLRFLESLPEEEQQRVLGEEKMLNISG 104
>d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding
protein 1 (GBP1), C-terminal domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 300
Score = 27.0 bits (59), Expect = 4.5
Identities = 4/31 (12%), Positives = 17/31 (54%)
Query: 2 EEEEDEKKKKKKKKKEEEEKKQKKQKKKKKK 32
E + + K++++ + ++Q++ K+ +
Sbjct: 253 ENDRVQLLKEQERTLALKLQEQEQLLKEGFQ 283
>d2gf5a2 a.77.1.4 (A:2-83) FADD (Mort1) {Human (Homo sapiens)
[TaxId: 9606]}
Length = 82
Score = 25.0 bits (55), Expect = 5.6
Identities = 6/55 (10%), Positives = 16/55 (29%), Gaps = 8/55 (14%)
Query: 312 NLTDDETEEMTYYLCHLFSRCTRSVSYPAPTYYAHLAAFRGRVYIKNRHLDMNNL 366
+L+ E E+ Y + ++ L ++ L+ +
Sbjct: 13 SLSSSELTELKYLCLGRVGKRKLERVQSGLDLFSML--------LEQNDLEPGHT 59
>d2j01q1 d.41.4.2 (Q:6-141) Ribosomal protein L16p {Thermus
thermophilus [TaxId: 274]}
Length = 136
Score = 25.6 bits (56), Expect = 7.8
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 189 GINHYVNKVKPVHIIFYRDGVSE 211
+ YV VKP ++F GV+E
Sbjct: 84 NVEGYVAVVKPGRVMFEVAGVTE 106
>d2gyck1 d.41.4.2 (K:3-133) Ribosomal protein L16p {Escherichia coli
[TaxId: 562]}
Length = 131
Score = 25.1 bits (55), Expect = 7.8
Identities = 6/23 (26%), Positives = 14/23 (60%)
Query: 189 GINHYVNKVKPVHIIFYRDGVSE 211
+ ++V ++P +++ DGV E
Sbjct: 86 NVEYWVALIQPGKVLYEMDGVPE 108
>d1v5ib1 d.58.3.2 (B:1-72) Proteinase A inhibitor 1, POIA1 {Oyster
mushroom (Pleurotus ostreatus) [TaxId: 5322]}
Length = 72
Score = 24.1 bits (52), Expect = 8.8
Identities = 5/60 (8%), Positives = 16/60 (26%)
Query: 40 HIIFYRDGVSEGQFQAVMRRCGPCSNRSVAGLSYTIFTGAEISAIKRACQGVEANYNPKV 99
I+ +++ VSE + + + G ++ + +
Sbjct: 5 FIVIFKNDVSEDKIRETKDEVIAEGGTITNEYNMPGMKGFAGELTPQSLTKFQGLQGDLI 64
>d1u7la_ e.57.1.1 (A:) Vacuolar ATP synthase subunit C {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 388
Score = 25.9 bits (57), Expect = 9.4
Identities = 6/24 (25%), Positives = 11/24 (45%)
Query: 3 EEEDEKKKKKKKKKEEEEKKQKKQ 26
EE ++ KK+ E+ + Q
Sbjct: 260 EELIDQLKKEHDSAASLEQSLRVQ 283
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.133 0.392
Gapped
Lambda K H
0.267 0.0634 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,448,873
Number of extensions: 68734
Number of successful extensions: 594
Number of sequences better than 10.0: 1
Number of HSP's gapped: 502
Number of HSP's successfully gapped: 90
Length of query: 387
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 300
Effective length of database: 1,213,086
Effective search space: 363925800
Effective search space used: 363925800
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (24.8 bits)