BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6534
(309 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|242013902|ref|XP_002427639.1| transcription initiation factor iib, putative [Pediculus humanus
corporis]
gi|212512060|gb|EEB14901.1| transcription initiation factor iib, putative [Pediculus humanus
corporis]
Length = 313
Score = 592 bits (1527), Expect = e-167, Method: Compositional matrix adjust.
Identities = 282/306 (92%), Positives = 293/306 (95%)
Query: 4 NKVCCYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGP 63
NKVCCY HPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEK+G DPSRVGGP
Sbjct: 8 NKVCCYAHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKAGTDPSRVGGP 67
Query: 64 ENPLLNGSDLSTMIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADRINL 123
ENPLLNGSDL TMIGPGRGDASFDG G+SKYQNRRTM+SSDRAL+NA REIN+MADRINL
Sbjct: 68 ENPLLNGSDLCTMIGPGRGDASFDGLGVSKYQNRRTMSSSDRALINAFREINAMADRINL 127
Query: 124 TKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKE 183
KTIVDRANNLFKQVHDGKNLKGR+NDAIASA LYIACRQEGVPRTFKEICAVSKISKKE
Sbjct: 128 PKTIVDRANNLFKQVHDGKNLKGRANDAIASAALYIACRQEGVPRTFKEICAVSKISKKE 187
Query: 184 IGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSP 243
IGRCFKLILKALETSVDLITTGDFMSRFCSNL LPNMVQ+AATHIARKAVELDIVPGRSP
Sbjct: 188 IGRCFKLILKALETSVDLITTGDFMSRFCSNLGLPNMVQRAATHIARKAVELDIVPGRSP 247
Query: 244 ISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKLFPQDFVFHTPI 303
ISVAAAAIYMASQAS DKR QKEIGDIAGVA+VTIRQSYKLMYPHA+KLFP+DF F TPI
Sbjct: 248 ISVAAAAIYMASQASDDKRVQKEIGDIAGVADVTIRQSYKLMYPHATKLFPEDFQFSTPI 307
Query: 304 HELPQL 309
ELPQ+
Sbjct: 308 EELPQM 313
>gi|383862315|ref|XP_003706629.1| PREDICTED: transcription initiation factor IIB-like [Megachile
rotundata]
Length = 315
Score = 592 bits (1526), Expect = e-167, Method: Compositional matrix adjust.
Identities = 282/306 (92%), Positives = 293/306 (95%)
Query: 4 NKVCCYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGP 63
NKVCCY HPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEK+GVDPSRVGGP
Sbjct: 10 NKVCCYAHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKAGVDPSRVGGP 69
Query: 64 ENPLLNGSDLSTMIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADRINL 123
ENPLLNGSDLSTMIGPG G ASFD FG+SKYQNRRTM+SSDRAL+NA REIN MADRINL
Sbjct: 70 ENPLLNGSDLSTMIGPGTGAASFDAFGVSKYQNRRTMSSSDRALINAFREINGMADRINL 129
Query: 124 TKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKE 183
KTIVDRANNLFKQVHDGKNLKGR+NDAIASACLYIACRQEGVPRTFKEICAVSKISKKE
Sbjct: 130 PKTIVDRANNLFKQVHDGKNLKGRANDAIASACLYIACRQEGVPRTFKEICAVSKISKKE 189
Query: 184 IGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSP 243
IGRCFKLILKALETSVDLITTGDFMSRFCSNL LPNMVQ+AATHIARKAVE+DIVPGRSP
Sbjct: 190 IGRCFKLILKALETSVDLITTGDFMSRFCSNLGLPNMVQRAATHIARKAVEIDIVPGRSP 249
Query: 244 ISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKLFPQDFVFHTPI 303
ISVAAAAIYMASQAS DKRSQKEIGDIAGVA+VTIRQSYKLMYPHA KLFP+DF F TPI
Sbjct: 250 ISVAAAAIYMASQASEDKRSQKEIGDIAGVADVTIRQSYKLMYPHAGKLFPEDFKFATPI 309
Query: 304 HELPQL 309
+LPQ+
Sbjct: 310 DQLPQM 315
>gi|48102797|ref|XP_395432.1| PREDICTED: transcription initiation factor IIB isoform 1 [Apis
mellifera]
gi|380019249|ref|XP_003693523.1| PREDICTED: transcription initiation factor IIB-like [Apis florea]
Length = 315
Score = 592 bits (1525), Expect = e-166, Method: Compositional matrix adjust.
Identities = 282/306 (92%), Positives = 292/306 (95%)
Query: 4 NKVCCYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGP 63
NKVCCY HPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEK+GVDPSRVGGP
Sbjct: 10 NKVCCYAHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKAGVDPSRVGGP 69
Query: 64 ENPLLNGSDLSTMIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADRINL 123
ENPLLNGSDLSTMIGPG G ASFD FG SKYQNRRTM+SSDRAL+NA REIN MADRINL
Sbjct: 70 ENPLLNGSDLSTMIGPGTGAASFDAFGASKYQNRRTMSSSDRALINAFREINGMADRINL 129
Query: 124 TKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKE 183
KTIVDRANNLFKQVHDGKNLKGR+NDAIASACLYIACRQEGVPRTFKEICAVSKISKKE
Sbjct: 130 PKTIVDRANNLFKQVHDGKNLKGRANDAIASACLYIACRQEGVPRTFKEICAVSKISKKE 189
Query: 184 IGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSP 243
IGRCFKLILKALETSVDLITTGDFMSRFCSNL LPNMVQ+AATHIARKAVE+DIVPGRSP
Sbjct: 190 IGRCFKLILKALETSVDLITTGDFMSRFCSNLGLPNMVQRAATHIARKAVEIDIVPGRSP 249
Query: 244 ISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKLFPQDFVFHTPI 303
ISVAAAAIYMASQAS DKRSQKEIGDIAGVA+VTIRQSYKLMYPHA KLFP+DF F TPI
Sbjct: 250 ISVAAAAIYMASQASEDKRSQKEIGDIAGVADVTIRQSYKLMYPHAGKLFPEDFRFATPI 309
Query: 304 HELPQL 309
+LPQ+
Sbjct: 310 DQLPQM 315
>gi|307179392|gb|EFN67722.1| Transcription initiation factor IIB [Camponotus floridanus]
Length = 315
Score = 589 bits (1518), Expect = e-166, Method: Compositional matrix adjust.
Identities = 279/308 (90%), Positives = 294/308 (95%)
Query: 2 NINKVCCYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVG 61
+ NK+CCY HPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSG+DPSRVG
Sbjct: 8 DTNKICCYAHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGIDPSRVG 67
Query: 62 GPENPLLNGSDLSTMIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADRI 121
GPENPLLNG+DLST+IGPG G ASFDGFG +KYQNRRT++SSDRALLNA REIN MADRI
Sbjct: 68 GPENPLLNGADLSTVIGPGTGAASFDGFGTAKYQNRRTLSSSDRALLNAFREINGMADRI 127
Query: 122 NLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISK 181
NL KTIVDRAN LFKQVHDGKNLKGR+NDAIASACLYIACRQEGVPRTFKEICAVSKISK
Sbjct: 128 NLPKTIVDRANTLFKQVHDGKNLKGRANDAIASACLYIACRQEGVPRTFKEICAVSKISK 187
Query: 182 KEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGR 241
KEIGRCFKLILKALETSVDLITTGDFMSRFCSNL LPNMVQ+AATHIARKAVE+DIVPGR
Sbjct: 188 KEIGRCFKLILKALETSVDLITTGDFMSRFCSNLGLPNMVQRAATHIARKAVEIDIVPGR 247
Query: 242 SPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKLFPQDFVFHT 301
SPISVAAAAIYMASQAS DKRSQKEIGDIAGVA+VTIRQSYKLMYPHASKLFP+DF F T
Sbjct: 248 SPISVAAAAIYMASQASEDKRSQKEIGDIAGVADVTIRQSYKLMYPHASKLFPEDFRFAT 307
Query: 302 PIHELPQL 309
PI +LPQ+
Sbjct: 308 PIDQLPQM 315
>gi|270006604|gb|EFA03052.1| hypothetical protein TcasGA2_TC010900 [Tribolium castaneum]
Length = 315
Score = 589 bits (1518), Expect = e-166, Method: Compositional matrix adjust.
Identities = 279/308 (90%), Positives = 295/308 (95%)
Query: 2 NINKVCCYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVG 61
+ NKVCC HPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVG
Sbjct: 8 DTNKVCCNSHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVG 67
Query: 62 GPENPLLNGSDLSTMIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADRI 121
GPENPLLNGSDL+TMIGPGRGDASFD FG+++YQNR+TM+SSDRAL+NA REIN MADRI
Sbjct: 68 GPENPLLNGSDLTTMIGPGRGDASFDSFGVARYQNRKTMSSSDRALINAFREINGMADRI 127
Query: 122 NLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISK 181
NL +TIVDRANNLFKQVHDG+NLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISK
Sbjct: 128 NLPRTIVDRANNLFKQVHDGRNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISK 187
Query: 182 KEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGR 241
+EIGRCFKLILKALETSVDLITTGDFMSRFCSNL LPNMVQ+AATHIARKAVELDIVPGR
Sbjct: 188 REIGRCFKLILKALETSVDLITTGDFMSRFCSNLGLPNMVQRAATHIARKAVELDIVPGR 247
Query: 242 SPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKLFPQDFVFHT 301
SPISVAAAAIYMASQAS DKRSQKEIGDIAGVA+VTIRQSYKLMYPHA KLFP+DF F T
Sbjct: 248 SPISVAAAAIYMASQASEDKRSQKEIGDIAGVADVTIRQSYKLMYPHAVKLFPEDFKFAT 307
Query: 302 PIHELPQL 309
PI +LPQ+
Sbjct: 308 PIDQLPQM 315
>gi|307197188|gb|EFN78510.1| Transcription initiation factor IIB [Harpegnathos saltator]
Length = 373
Score = 588 bits (1517), Expect = e-166, Method: Compositional matrix adjust.
Identities = 281/306 (91%), Positives = 292/306 (95%)
Query: 4 NKVCCYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGP 63
NKVCCY HPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGP
Sbjct: 68 NKVCCYAHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGP 127
Query: 64 ENPLLNGSDLSTMIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADRINL 123
ENPLL+GSDLSTMIGPG G ASFDGFG +KYQNRRTM+SSDRAL+NA REIN MADRINL
Sbjct: 128 ENPLLSGSDLSTMIGPGTGAASFDGFGTAKYQNRRTMSSSDRALVNAFREINGMADRINL 187
Query: 124 TKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKE 183
KTIVDRAN LFKQVHDGKNLKGR+NDAIASACLYIACRQEGVPRTFKEICAVSKISKKE
Sbjct: 188 PKTIVDRANTLFKQVHDGKNLKGRANDAIASACLYIACRQEGVPRTFKEICAVSKISKKE 247
Query: 184 IGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSP 243
IGRCFKLILKALETSVDLITTGDFMSRFCSNL LPNMVQ+AATHIARKAVE+DIVPGRSP
Sbjct: 248 IGRCFKLILKALETSVDLITTGDFMSRFCSNLGLPNMVQRAATHIARKAVEIDIVPGRSP 307
Query: 244 ISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKLFPQDFVFHTPI 303
ISVAAAAIYMASQAS DKRSQKEIGDIAGVA+VTIRQSYKLMYPHA KLFP+DF F TPI
Sbjct: 308 ISVAAAAIYMASQASEDKRSQKEIGDIAGVADVTIRQSYKLMYPHACKLFPEDFKFATPI 367
Query: 304 HELPQL 309
+LPQ+
Sbjct: 368 DQLPQM 373
>gi|350417950|ref|XP_003491660.1| PREDICTED: transcription initiation factor IIB-like [Bombus
impatiens]
Length = 315
Score = 588 bits (1516), Expect = e-165, Method: Compositional matrix adjust.
Identities = 281/306 (91%), Positives = 291/306 (95%)
Query: 4 NKVCCYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGP 63
NKVCCY HPDA LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEK+GVDPSRVGGP
Sbjct: 10 NKVCCYAHPDASLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKAGVDPSRVGGP 69
Query: 64 ENPLLNGSDLSTMIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADRINL 123
ENPLLNGSDLSTMIGPG G ASFD FG SKYQNRRTM+SSDRAL+NA REIN MADRINL
Sbjct: 70 ENPLLNGSDLSTMIGPGTGAASFDAFGASKYQNRRTMSSSDRALINAFREINGMADRINL 129
Query: 124 TKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKE 183
KTIVDRANNLFKQVHDGKNLKGR+NDAIASACLYIACRQEGVPRTFKEICAVSKISKKE
Sbjct: 130 PKTIVDRANNLFKQVHDGKNLKGRANDAIASACLYIACRQEGVPRTFKEICAVSKISKKE 189
Query: 184 IGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSP 243
IGRCFKLILKALETSVDLITTGDFMSRFCSNL LPNMVQ+AATHIARKAVE+DIVPGRSP
Sbjct: 190 IGRCFKLILKALETSVDLITTGDFMSRFCSNLGLPNMVQRAATHIARKAVEIDIVPGRSP 249
Query: 244 ISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKLFPQDFVFHTPI 303
ISVAAAAIYMASQAS DKRSQKEIGDIAGVA+VTIRQSYKLMYPHA KLFP+DF F TPI
Sbjct: 250 ISVAAAAIYMASQASEDKRSQKEIGDIAGVADVTIRQSYKLMYPHAGKLFPEDFRFATPI 309
Query: 304 HELPQL 309
+LPQ+
Sbjct: 310 DQLPQM 315
>gi|322794062|gb|EFZ17278.1| hypothetical protein SINV_13223 [Solenopsis invicta]
Length = 321
Score = 588 bits (1515), Expect = e-165, Method: Compositional matrix adjust.
Identities = 281/306 (91%), Positives = 292/306 (95%)
Query: 4 NKVCCYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGP 63
NK+CCY HPDA LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGP
Sbjct: 5 NKICCYAHPDATLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGP 64
Query: 64 ENPLLNGSDLSTMIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADRINL 123
ENPLLNG+DLSTMIGPG G ASFDGFG +KYQNRRTM+SSDRALLNA REIN MADRINL
Sbjct: 65 ENPLLNGADLSTMIGPGTGAASFDGFGTAKYQNRRTMSSSDRALLNAFREINGMADRINL 124
Query: 124 TKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKE 183
KTIVDRAN LFKQVHDGKNLKGR+NDAIASACLYIACRQEGVPRTFKEICAVSKISKKE
Sbjct: 125 PKTIVDRANALFKQVHDGKNLKGRANDAIASACLYIACRQEGVPRTFKEICAVSKISKKE 184
Query: 184 IGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSP 243
IGRCFKLILKALETSVDLITTGDFMSRFCSNL LPNMVQKAATHIARKAVE+DIVPGRSP
Sbjct: 185 IGRCFKLILKALETSVDLITTGDFMSRFCSNLGLPNMVQKAATHIARKAVEIDIVPGRSP 244
Query: 244 ISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKLFPQDFVFHTPI 303
ISVAAAAIYMASQAS DKRSQKEIGDIAGVA+VTIRQSYKLMYPHA+KLFP+DF F TPI
Sbjct: 245 ISVAAAAIYMASQASEDKRSQKEIGDIAGVADVTIRQSYKLMYPHANKLFPEDFKFATPI 304
Query: 304 HELPQL 309
+LPQ+
Sbjct: 305 DQLPQI 310
>gi|332376975|gb|AEE63627.1| unknown [Dendroctonus ponderosae]
Length = 315
Score = 583 bits (1504), Expect = e-164, Method: Compositional matrix adjust.
Identities = 276/306 (90%), Positives = 293/306 (95%)
Query: 4 NKVCCYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGP 63
NKVCC HP+APLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGP
Sbjct: 10 NKVCCSSHPEAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGP 69
Query: 64 ENPLLNGSDLSTMIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADRINL 123
ENPLL GSDL+TMIGPGRGDAS+D FG+++YQNRRTMNSSDRAL+NA +EIN+MADRINL
Sbjct: 70 ENPLLGGSDLTTMIGPGRGDASYDTFGVARYQNRRTMNSSDRALINAFKEINAMADRINL 129
Query: 124 TKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKE 183
+TIVDRANNLFKQVHDG+NLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISK+E
Sbjct: 130 PRTIVDRANNLFKQVHDGRNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKRE 189
Query: 184 IGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSP 243
IGRCFKLILKALETSVDLITTGDFMSRFCSNL LPNMVQ+AATHIARKAVELDIVPGRSP
Sbjct: 190 IGRCFKLILKALETSVDLITTGDFMSRFCSNLGLPNMVQRAATHIARKAVELDIVPGRSP 249
Query: 244 ISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKLFPQDFVFHTPI 303
ISVAAAAIYMASQAS DKRSQKEIGDIAGVA+VTIRQSYKLMYPHA+ LFP DF F TPI
Sbjct: 250 ISVAAAAIYMASQASEDKRSQKEIGDIAGVADVTIRQSYKLMYPHAASLFPPDFKFATPI 309
Query: 304 HELPQL 309
+LPQ+
Sbjct: 310 DQLPQM 315
>gi|156546454|ref|XP_001607291.1| PREDICTED: transcription initiation factor IIB-like [Nasonia
vitripennis]
Length = 315
Score = 580 bits (1495), Expect = e-163, Method: Compositional matrix adjust.
Identities = 273/308 (88%), Positives = 293/308 (95%)
Query: 2 NINKVCCYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVG 61
+ NKVCCY HP+APLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSN+K+G DPSRVG
Sbjct: 8 DTNKVCCYAHPEAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNDKAGTDPSRVG 67
Query: 62 GPENPLLNGSDLSTMIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADRI 121
GPENPLLNGSDLST+IGPG G ASFD FG+SKYQNRRTMNSSDR L+NA REIN+MADRI
Sbjct: 68 GPENPLLNGSDLSTIIGPGTGAASFDAFGVSKYQNRRTMNSSDRTLINAFREINAMADRI 127
Query: 122 NLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISK 181
NL +TIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISK
Sbjct: 128 NLPRTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISK 187
Query: 182 KEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGR 241
KEIGRCFKLILKALETSVDLITTGDFMSRFCSNL LPNMVQ+AATHIARKAV++DIVPGR
Sbjct: 188 KEIGRCFKLILKALETSVDLITTGDFMSRFCSNLGLPNMVQRAATHIARKAVDIDIVPGR 247
Query: 242 SPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKLFPQDFVFHT 301
SPISV AAAIYMASQAS DK+SQKEIGDIAGVA+VTIRQSYKLM+PHA++LFP+DF F T
Sbjct: 248 SPISVTAAAIYMASQASDDKKSQKEIGDIAGVADVTIRQSYKLMFPHAARLFPEDFKFTT 307
Query: 302 PIHELPQL 309
PI +LPQ+
Sbjct: 308 PIDQLPQM 315
>gi|189236988|ref|XP_970151.2| PREDICTED: similar to Transcription initiation factor IIB (General
transcription factor TFIIB) [Tribolium castaneum]
Length = 313
Score = 580 bits (1494), Expect = e-163, Method: Compositional matrix adjust.
Identities = 277/308 (89%), Positives = 293/308 (95%), Gaps = 2/308 (0%)
Query: 2 NINKVCCYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVG 61
+ NKVCC HPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVG
Sbjct: 8 DTNKVCCNSHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVG 67
Query: 62 GPENPLLNGSDLSTMIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADRI 121
GPENPLLNGSDL+TMIGPG DASFD FG+++YQNR+TM+SSDRAL+NA REIN MADRI
Sbjct: 68 GPENPLLNGSDLTTMIGPG--DASFDSFGVARYQNRKTMSSSDRALINAFREINGMADRI 125
Query: 122 NLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISK 181
NL +TIVDRANNLFKQVHDG+NLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISK
Sbjct: 126 NLPRTIVDRANNLFKQVHDGRNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISK 185
Query: 182 KEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGR 241
+EIGRCFKLILKALETSVDLITTGDFMSRFCSNL LPNMVQ+AATHIARKAVELDIVPGR
Sbjct: 186 REIGRCFKLILKALETSVDLITTGDFMSRFCSNLGLPNMVQRAATHIARKAVELDIVPGR 245
Query: 242 SPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKLFPQDFVFHT 301
SPISVAAAAIYMASQAS DKRSQKEIGDIAGVA+VTIRQSYKLMYPHA KLFP+DF F T
Sbjct: 246 SPISVAAAAIYMASQASEDKRSQKEIGDIAGVADVTIRQSYKLMYPHAVKLFPEDFKFAT 305
Query: 302 PIHELPQL 309
PI +LPQ+
Sbjct: 306 PIDQLPQM 313
>gi|195118790|ref|XP_002003919.1| GI20422 [Drosophila mojavensis]
gi|195384910|ref|XP_002051155.1| TfIIB [Drosophila virilis]
gi|193914494|gb|EDW13361.1| GI20422 [Drosophila mojavensis]
gi|194147612|gb|EDW63310.1| TfIIB [Drosophila virilis]
Length = 315
Score = 564 bits (1454), Expect = e-158, Method: Compositional matrix adjust.
Identities = 267/306 (87%), Positives = 286/306 (93%)
Query: 4 NKVCCYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGP 63
NKVCCY HP++PLIEDYRAGD ICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGP
Sbjct: 10 NKVCCYAHPESPLIEDYRAGDMICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGP 69
Query: 64 ENPLLNGSDLSTMIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADRINL 123
ENPLL+G DLST+IGPG G ASFD FG KYQNRRTM+SSDR+L++A +EI+SMADRINL
Sbjct: 70 ENPLLSGGDLSTIIGPGTGSASFDAFGAPKYQNRRTMSSSDRSLISAFKEISSMADRINL 129
Query: 124 TKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKE 183
KTIVDRANNLFKQVHDGKNLKGRSNDA ASACLYIACRQEGVPRTFKEICAVSKISKKE
Sbjct: 130 PKTIVDRANNLFKQVHDGKNLKGRSNDAKASACLYIACRQEGVPRTFKEICAVSKISKKE 189
Query: 184 IGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSP 243
IGRCFKL LKALETSVDLITT DFM RFC+NL LPNMVQ+AATHIA+KAVE+DIVPGRSP
Sbjct: 190 IGRCFKLTLKALETSVDLITTADFMCRFCANLDLPNMVQRAATHIAKKAVEMDIVPGRSP 249
Query: 244 ISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKLFPQDFVFHTPI 303
ISVAAAAIYMASQAS KRSQKEIGDIAGVA+VTIRQSYKLMYPHA+KLFP+DF F TPI
Sbjct: 250 ISVAAAAIYMASQASEHKRSQKEIGDIAGVADVTIRQSYKLMYPHAAKLFPEDFKFTTPI 309
Query: 304 HELPQL 309
+LPQ+
Sbjct: 310 DQLPQM 315
>gi|17136758|ref|NP_476888.1| transcription factor IIB, isoform A [Drosophila melanogaster]
gi|442627311|ref|NP_001260349.1| transcription factor IIB, isoform B [Drosophila melanogaster]
gi|194761835|ref|XP_001963128.1| GF15790 [Drosophila ananassae]
gi|194859971|ref|XP_001969489.1| GG10133 [Drosophila erecta]
gi|195146744|ref|XP_002014344.1| GL19146 [Drosophila persimilis]
gi|195434140|ref|XP_002065061.1| GK14874 [Drosophila willistoni]
gi|195578215|ref|XP_002078961.1| GD23702 [Drosophila simulans]
gi|135628|sp|P29052.1|TF2B_DROME RecName: Full=Transcription initiation factor IIB; AltName:
Full=General transcription factor TFIIB
gi|158538|gb|AAA28929.1| RNA polymerase II transcription factor [Drosophila melanogaster]
gi|158540|gb|AAA28930.1| transcription factor IIB [Drosophila melanogaster]
gi|414282|gb|AAA68626.1| transcription factor IIB [Drosophila melanogaster]
gi|1016268|gb|AAA79093.1| transcription factor IIB [Drosophila melanogaster]
gi|7297699|gb|AAF52951.1| transcription factor IIB, isoform A [Drosophila melanogaster]
gi|41058137|gb|AAR99117.1| RE29729p [Drosophila melanogaster]
gi|51092169|gb|AAT94498.1| LD24035p [Drosophila melanogaster]
gi|190616825|gb|EDV32349.1| GF15790 [Drosophila ananassae]
gi|190661356|gb|EDV58548.1| GG10133 [Drosophila erecta]
gi|194106297|gb|EDW28340.1| GL19146 [Drosophila persimilis]
gi|194161146|gb|EDW76047.1| GK14874 [Drosophila willistoni]
gi|194190970|gb|EDX04546.1| GD23702 [Drosophila simulans]
gi|220953484|gb|ACL89285.1| TfIIB-PA [synthetic construct]
gi|440213669|gb|AGB92884.1| transcription factor IIB, isoform B [Drosophila melanogaster]
Length = 315
Score = 564 bits (1453), Expect = e-158, Method: Compositional matrix adjust.
Identities = 267/309 (86%), Positives = 288/309 (93%)
Query: 1 MNINKVCCYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRV 60
++ NKVCCY HP++PLIEDYRAGD ICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRV
Sbjct: 7 LDNNKVCCYAHPESPLIEDYRAGDMICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRV 66
Query: 61 GGPENPLLNGSDLSTMIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADR 120
GGPENPLL+G DLST+IGPG G ASFD FG KYQNRRTM+SSDR+L++A +EI+SMADR
Sbjct: 67 GGPENPLLSGGDLSTIIGPGTGSASFDAFGAPKYQNRRTMSSSDRSLISAFKEISSMADR 126
Query: 121 INLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKIS 180
INL KTIVDRANNLFKQVHDGKNLKGRSNDA ASACLYIACRQEGVPRTFKEICAVSKIS
Sbjct: 127 INLPKTIVDRANNLFKQVHDGKNLKGRSNDAKASACLYIACRQEGVPRTFKEICAVSKIS 186
Query: 181 KKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPG 240
KKEIGRCFKL LKALETSVDLITT DFM RFC+NL LPNMVQ+AATHIA+KAVE+DIVPG
Sbjct: 187 KKEIGRCFKLTLKALETSVDLITTADFMCRFCANLDLPNMVQRAATHIAKKAVEMDIVPG 246
Query: 241 RSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKLFPQDFVFH 300
RSPISVAAAAIYMASQAS KRSQKEIGDIAGVA+VTIRQSYKLMYPHA+KLFP+DF F
Sbjct: 247 RSPISVAAAAIYMASQASEHKRSQKEIGDIAGVADVTIRQSYKLMYPHAAKLFPEDFKFT 306
Query: 301 TPIHELPQL 309
TPI +LPQ+
Sbjct: 307 TPIDQLPQM 315
>gi|195473679|ref|XP_002089120.1| GE18945 [Drosophila yakuba]
gi|194175221|gb|EDW88832.1| GE18945 [Drosophila yakuba]
Length = 315
Score = 562 bits (1449), Expect = e-158, Method: Compositional matrix adjust.
Identities = 266/309 (86%), Positives = 288/309 (93%)
Query: 1 MNINKVCCYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRV 60
++ NKVCCY HP++PLIEDYRAGD ICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRV
Sbjct: 7 LDNNKVCCYAHPESPLIEDYRAGDMICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRV 66
Query: 61 GGPENPLLNGSDLSTMIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADR 120
GGPENPLL+G DLST+IGPG G ASFD FG KYQNRRTM+SSDR+L++A +EI+SMADR
Sbjct: 67 GGPENPLLSGGDLSTIIGPGTGSASFDAFGAPKYQNRRTMSSSDRSLISAFKEISSMADR 126
Query: 121 INLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKIS 180
INL KTIVDRANNLFKQVHDGKNLKGRSNDA ASACLYIACRQEGVPRTFKEICAVSKIS
Sbjct: 127 INLPKTIVDRANNLFKQVHDGKNLKGRSNDAKASACLYIACRQEGVPRTFKEICAVSKIS 186
Query: 181 KKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPG 240
KKEIGRCFKL LKALETSVDLITT DFM RFC+NL LPNMVQ+AATHIA+KAVE+DIVPG
Sbjct: 187 KKEIGRCFKLTLKALETSVDLITTADFMCRFCANLDLPNMVQRAATHIAKKAVEMDIVPG 246
Query: 241 RSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKLFPQDFVFH 300
RSPISVAAAAIYMASQAS KRSQK+IGDIAGVA+VTIRQSYKLMYPHA+KLFP+DF F
Sbjct: 247 RSPISVAAAAIYMASQASEHKRSQKDIGDIAGVADVTIRQSYKLMYPHAAKLFPEDFKFT 306
Query: 301 TPIHELPQL 309
TPI +LPQ+
Sbjct: 307 TPIDQLPQM 315
>gi|195339829|ref|XP_002036519.1| GM18405 [Drosophila sechellia]
gi|194130399|gb|EDW52442.1| GM18405 [Drosophila sechellia]
Length = 315
Score = 561 bits (1446), Expect = e-157, Method: Compositional matrix adjust.
Identities = 266/309 (86%), Positives = 287/309 (92%)
Query: 1 MNINKVCCYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRV 60
++ NKVCCY HP++PLIEDYRAGD ICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRV
Sbjct: 7 LDNNKVCCYAHPESPLIEDYRAGDMICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRV 66
Query: 61 GGPENPLLNGSDLSTMIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADR 120
GGPENPLL+G DLST+IGPG G ASFD FG KYQNRRTM+SSDR+L++A +EI+SMADR
Sbjct: 67 GGPENPLLSGGDLSTIIGPGTGSASFDAFGAPKYQNRRTMSSSDRSLISAFKEISSMADR 126
Query: 121 INLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKIS 180
INL KTIVDRANNLFKQVHDGKNLKGRSNDA ASACLYIACRQEGVPRTFKEICAVSKIS
Sbjct: 127 INLPKTIVDRANNLFKQVHDGKNLKGRSNDAKASACLYIACRQEGVPRTFKEICAVSKIS 186
Query: 181 KKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPG 240
KKEIGRCFKL LKALETSVDLITT DFM RFC+NL LPNMVQ+AATHIA+KAVE+DIVPG
Sbjct: 187 KKEIGRCFKLTLKALETSVDLITTADFMCRFCANLDLPNMVQRAATHIAKKAVEMDIVPG 246
Query: 241 RSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKLFPQDFVFH 300
RSPISVAAAAIYMASQAS KRSQKEIGDIAGVA+VTIRQSYKLMYPHA+KLFP+ F F
Sbjct: 247 RSPISVAAAAIYMASQASEHKRSQKEIGDIAGVADVTIRQSYKLMYPHAAKLFPEHFEFT 306
Query: 301 TPIHELPQL 309
TPI +LPQ+
Sbjct: 307 TPIDQLPQM 315
>gi|170041267|ref|XP_001848391.1| transcription initiation factor TFIIB [Culex quinquefasciatus]
gi|167864865|gb|EDS28248.1| transcription initiation factor TFIIB [Culex quinquefasciatus]
Length = 316
Score = 560 bits (1444), Expect = e-157, Method: Compositional matrix adjust.
Identities = 263/308 (85%), Positives = 286/308 (92%)
Query: 2 NINKVCCYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVG 61
++NKVCCY HPDAPLIEDYRAGD ICSECGLVVGDRVIDVGSEWRTFSNEK+GVDPSRVG
Sbjct: 9 HLNKVCCYAHPDAPLIEDYRAGDMICSECGLVVGDRVIDVGSEWRTFSNEKAGVDPSRVG 68
Query: 62 GPENPLLNGSDLSTMIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADRI 121
GPENPLL+G DLSTMIGPG G ASFD FG +KYQNRRTM+SSDRAL+ A +EI++MADRI
Sbjct: 69 GPENPLLSGGDLSTMIGPGTGPASFDAFGTAKYQNRRTMSSSDRALIAAFKEISTMADRI 128
Query: 122 NLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISK 181
NL KTIVDRANNLFKQVHDGKNLKGRSNDA ASACLYIACRQEGVPRTFKEICAVSKISK
Sbjct: 129 NLPKTIVDRANNLFKQVHDGKNLKGRSNDAKASACLYIACRQEGVPRTFKEICAVSKISK 188
Query: 182 KEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGR 241
KEIGRCFKL LKAL TSVDLITT DFMSRFC+NL LPN VQ+AATHIARKAVE+DIVPGR
Sbjct: 189 KEIGRCFKLTLKALATSVDLITTADFMSRFCANLDLPNTVQRAATHIARKAVEMDIVPGR 248
Query: 242 SPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKLFPQDFVFHT 301
SPISVAAAAIYMASQAS K++ KEIGDIAGVA+VTIRQSY+LMYPHA++LFP+DF + T
Sbjct: 249 SPISVAAAAIYMASQASDQKKTHKEIGDIAGVADVTIRQSYRLMYPHAAELFPEDFKYTT 308
Query: 302 PIHELPQL 309
PI +LPQ+
Sbjct: 309 PIEQLPQM 316
>gi|195051163|ref|XP_001993045.1| GH13607 [Drosophila grimshawi]
gi|193900104|gb|EDV98970.1| GH13607 [Drosophila grimshawi]
Length = 315
Score = 560 bits (1444), Expect = e-157, Method: Compositional matrix adjust.
Identities = 265/306 (86%), Positives = 285/306 (93%)
Query: 4 NKVCCYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGP 63
NKVCCY HP++PLIEDYRAGD ICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGP
Sbjct: 10 NKVCCYAHPESPLIEDYRAGDMICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGP 69
Query: 64 ENPLLNGSDLSTMIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADRINL 123
ENPLL+G DLST+IGPG G ASFD FG KYQNRRTM+SSDR+L++A +EI+ MADRINL
Sbjct: 70 ENPLLSGGDLSTIIGPGTGSASFDAFGAPKYQNRRTMSSSDRSLISAFKEISLMADRINL 129
Query: 124 TKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKE 183
KTIVDRANNLFKQVHDGKNLKGRSNDA +SACLYIACRQEGVPRTFKEICAVSKISKKE
Sbjct: 130 PKTIVDRANNLFKQVHDGKNLKGRSNDAKSSACLYIACRQEGVPRTFKEICAVSKISKKE 189
Query: 184 IGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSP 243
IGRCFKL LKALETSVDLITT DFM RFC+NL LPNMVQ+AATHIA+KAVE+DIVPGRSP
Sbjct: 190 IGRCFKLTLKALETSVDLITTADFMCRFCANLDLPNMVQRAATHIAKKAVEMDIVPGRSP 249
Query: 244 ISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKLFPQDFVFHTPI 303
ISVAAAAIYMASQAS KRSQKEIGDIAGVA+VTIRQSYKLMYPHA+KLFP+DF F TPI
Sbjct: 250 ISVAAAAIYMASQASEHKRSQKEIGDIAGVADVTIRQSYKLMYPHAAKLFPEDFKFTTPI 309
Query: 304 HELPQL 309
+LPQ+
Sbjct: 310 DQLPQM 315
>gi|157109648|ref|XP_001650764.1| transcription initiation factor TFIIB [Aedes aegypti]
gi|108878948|gb|EAT43173.1| AAEL005368-PA [Aedes aegypti]
Length = 316
Score = 559 bits (1441), Expect = e-157, Method: Compositional matrix adjust.
Identities = 263/308 (85%), Positives = 286/308 (92%)
Query: 2 NINKVCCYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVG 61
++NKVCCY HPDAPLIEDYRAGD ICSECGLVVGDRVIDVGSEWRTFSNEK+GVDPSRVG
Sbjct: 9 HLNKVCCYAHPDAPLIEDYRAGDMICSECGLVVGDRVIDVGSEWRTFSNEKAGVDPSRVG 68
Query: 62 GPENPLLNGSDLSTMIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADRI 121
GPENPLL+G DLSTMIGPG G ASFD FG +KYQNRRTM+SSDRAL+ A +EI++MADRI
Sbjct: 69 GPENPLLSGGDLSTMIGPGTGPASFDAFGTAKYQNRRTMSSSDRALIAAFKEISTMADRI 128
Query: 122 NLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISK 181
NL KTIVDRANNLFKQVHDGKNLKGRSNDA ASACLYIACRQEGVPRTFKEICAVSKISK
Sbjct: 129 NLPKTIVDRANNLFKQVHDGKNLKGRSNDAKASACLYIACRQEGVPRTFKEICAVSKISK 188
Query: 182 KEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGR 241
KEIGRCFKL LKAL TSVDLITT DFMSRFC+NL LPN VQ+AATHIARKAVE+DIVPGR
Sbjct: 189 KEIGRCFKLTLKALATSVDLITTADFMSRFCANLDLPNTVQRAATHIARKAVEMDIVPGR 248
Query: 242 SPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKLFPQDFVFHT 301
SPISVAAAAIYMASQAS K++ KEIGDIAGVA+VTIRQSY+LM+PHA++LFP+DF F T
Sbjct: 249 SPISVAAAAIYMASQASDQKKTHKEIGDIAGVADVTIRQSYRLMHPHAAELFPEDFKFTT 308
Query: 302 PIHELPQL 309
PI +LPQ+
Sbjct: 309 PIDQLPQM 316
>gi|158288246|ref|XP_310128.4| AGAP009558-PA [Anopheles gambiae str. PEST]
gi|157019157|gb|EAA05904.4| AGAP009558-PA [Anopheles gambiae str. PEST]
Length = 316
Score = 559 bits (1440), Expect = e-157, Method: Compositional matrix adjust.
Identities = 262/308 (85%), Positives = 287/308 (93%)
Query: 2 NINKVCCYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVG 61
++NKVCCY HP+APLIEDYRAGD ICSECGLVVGDRVIDVGSEWRTFSNEK+GVDPSRVG
Sbjct: 9 HLNKVCCYSHPEAPLIEDYRAGDMICSECGLVVGDRVIDVGSEWRTFSNEKAGVDPSRVG 68
Query: 62 GPENPLLNGSDLSTMIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADRI 121
GPENPLL+G DLSTMIGPG G ASFD FG +KYQNRRTM+SSDRAL+ A +EI++MADRI
Sbjct: 69 GPENPLLSGGDLSTMIGPGTGPASFDAFGTAKYQNRRTMSSSDRALIAAFKEISTMADRI 128
Query: 122 NLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISK 181
NL KTI DRANNLFKQVHDGKNLKGRSNDA ASACLYIACRQEGVPRTFKEICAVSKISK
Sbjct: 129 NLPKTITDRANNLFKQVHDGKNLKGRSNDAKASACLYIACRQEGVPRTFKEICAVSKISK 188
Query: 182 KEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGR 241
KEIGRCFKL LKAL TSVDLITT DFMSRFC+NL LPN+VQ+AATHIARKAVE+DIVPGR
Sbjct: 189 KEIGRCFKLTLKALATSVDLITTADFMSRFCANLDLPNVVQRAATHIARKAVEMDIVPGR 248
Query: 242 SPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKLFPQDFVFHT 301
SPISVAAAAIYMASQAS +K++ KEIGDIAGVA+VTIRQSY+LMYPHA++LFP+DF FHT
Sbjct: 249 SPISVAAAAIYMASQASDNKKTHKEIGDIAGVADVTIRQSYRLMYPHAAELFPEDFNFHT 308
Query: 302 PIHELPQL 309
PI +LP +
Sbjct: 309 PIDQLPPV 316
>gi|157109646|ref|XP_001650763.1| transcription initiation factor TFIIB [Aedes aegypti]
gi|108878947|gb|EAT43172.1| AAEL005368-PB [Aedes aegypti]
Length = 318
Score = 558 bits (1439), Expect = e-157, Method: Compositional matrix adjust.
Identities = 263/308 (85%), Positives = 286/308 (92%)
Query: 2 NINKVCCYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVG 61
++NKVCCY HPDAPLIEDYRAGD ICSECGLVVGDRVIDVGSEWRTFSNEK+GVDPSRVG
Sbjct: 9 HLNKVCCYAHPDAPLIEDYRAGDMICSECGLVVGDRVIDVGSEWRTFSNEKAGVDPSRVG 68
Query: 62 GPENPLLNGSDLSTMIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADRI 121
GPENPLL+G DLSTMIGPG G ASFD FG +KYQNRRTM+SSDRAL+ A +EI++MADRI
Sbjct: 69 GPENPLLSGGDLSTMIGPGTGPASFDAFGTAKYQNRRTMSSSDRALIAAFKEISTMADRI 128
Query: 122 NLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISK 181
NL KTIVDRANNLFKQVHDGKNLKGRSNDA ASACLYIACRQEGVPRTFKEICAVSKISK
Sbjct: 129 NLPKTIVDRANNLFKQVHDGKNLKGRSNDAKASACLYIACRQEGVPRTFKEICAVSKISK 188
Query: 182 KEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGR 241
KEIGRCFKL LKAL TSVDLITT DFMSRFC+NL LPN VQ+AATHIARKAVE+DIVPGR
Sbjct: 189 KEIGRCFKLTLKALATSVDLITTADFMSRFCANLDLPNTVQRAATHIARKAVEMDIVPGR 248
Query: 242 SPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKLFPQDFVFHT 301
SPISVAAAAIYMASQAS K++ KEIGDIAGVA+VTIRQSY+LM+PHA++LFP+DF F T
Sbjct: 249 SPISVAAAAIYMASQASDQKKTHKEIGDIAGVADVTIRQSYRLMHPHAAELFPEDFKFTT 308
Query: 302 PIHELPQL 309
PI +LPQ+
Sbjct: 309 PIDQLPQI 316
>gi|289740973|gb|ADD19234.1| transcription initiation factor tFIIB [Glossina morsitans
morsitans]
Length = 314
Score = 554 bits (1427), Expect = e-155, Method: Compositional matrix adjust.
Identities = 263/308 (85%), Positives = 283/308 (91%)
Query: 2 NINKVCCYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVG 61
+ NKVCC+ HPDAPLIEDYRAGD IC ECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVG
Sbjct: 7 DTNKVCCFYHPDAPLIEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVG 66
Query: 62 GPENPLLNGSDLSTMIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADRI 121
GPENPLL+G DLST+IGPG G ASFD G KYQNRRTM+SSDR+L++A +EI+ MADRI
Sbjct: 67 GPENPLLSGGDLSTIIGPGTGSASFDASGSPKYQNRRTMSSSDRSLISAFKEISMMADRI 126
Query: 122 NLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISK 181
NL KTI+DRANNLFKQVHDGKNLKGRSNDA ASACLYIACRQEGVPRTFKEICAVSKISK
Sbjct: 127 NLPKTIIDRANNLFKQVHDGKNLKGRSNDAKASACLYIACRQEGVPRTFKEICAVSKISK 186
Query: 182 KEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGR 241
KEIGRCFKL LKALETSVDLITT DFMSRFC+NL LPN VQ+AATHIA+KAVE+DIVPGR
Sbjct: 187 KEIGRCFKLTLKALETSVDLITTADFMSRFCANLDLPNTVQRAATHIAKKAVEMDIVPGR 246
Query: 242 SPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKLFPQDFVFHT 301
SPISVAAAAIYMASQAS KRSQKEIGDIAGVA+VTIRQSYKLMYP A+KLFP+DF F T
Sbjct: 247 SPISVAAAAIYMASQASEHKRSQKEIGDIAGVADVTIRQSYKLMYPEAAKLFPEDFKFTT 306
Query: 302 PIHELPQL 309
PI +LPQ+
Sbjct: 307 PIDQLPQM 314
>gi|312379141|gb|EFR25512.1| hypothetical protein AND_09086 [Anopheles darlingi]
Length = 338
Score = 551 bits (1421), Expect = e-154, Method: Compositional matrix adjust.
Identities = 261/309 (84%), Positives = 286/309 (92%)
Query: 1 MNINKVCCYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRV 60
+ ++KVCC HPDAPLIEDYRAGD ICSECGLVVGDRVIDVGSEWRTFSNEK+GVDPSRV
Sbjct: 30 IQLHKVCCNSHPDAPLIEDYRAGDMICSECGLVVGDRVIDVGSEWRTFSNEKAGVDPSRV 89
Query: 61 GGPENPLLNGSDLSTMIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADR 120
GGPENPLL+G DLSTMIGPG G ASFD FG +KYQNRRTM+SSDRAL+ A +EI++MADR
Sbjct: 90 GGPENPLLSGGDLSTMIGPGTGPASFDAFGTAKYQNRRTMSSSDRALIAAFKEISTMADR 149
Query: 121 INLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKIS 180
INL KTI DRANNLFKQVHDGKNLKGRSNDA ASACLYIACRQEGVPRTFKEICAVSKIS
Sbjct: 150 INLPKTITDRANNLFKQVHDGKNLKGRSNDAKASACLYIACRQEGVPRTFKEICAVSKIS 209
Query: 181 KKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPG 240
KKEIGRCFKL LKAL TSVDLITT DFMSRFC+NL LPN+VQ+AATHIARKAVE+DIVPG
Sbjct: 210 KKEIGRCFKLTLKALATSVDLITTADFMSRFCANLDLPNVVQRAATHIARKAVEMDIVPG 269
Query: 241 RSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKLFPQDFVFH 300
RSPISVAAAAIYMASQAS++K++ KEIGDIAGVA+VTIRQSY+LMYPHAS+LFP+DF F
Sbjct: 270 RSPISVAAAAIYMASQASNNKKTHKEIGDIAGVADVTIRQSYRLMYPHASELFPEDFNFF 329
Query: 301 TPIHELPQL 309
TPI +LP +
Sbjct: 330 TPIDQLPPV 338
>gi|198475810|ref|XP_002132499.1| GA27746 [Drosophila pseudoobscura pseudoobscura]
gi|198137970|gb|EDY69901.1| GA27746 [Drosophila pseudoobscura pseudoobscura]
Length = 314
Score = 548 bits (1411), Expect = e-153, Method: Compositional matrix adjust.
Identities = 262/309 (84%), Positives = 281/309 (90%), Gaps = 1/309 (0%)
Query: 1 MNINKVCCYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRV 60
++ NKVCCY HP++PLIEDYRAGD ICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRV
Sbjct: 7 LDNNKVCCYAHPESPLIEDYRAGDMICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRV 66
Query: 61 GGPENPLLNGSDLSTMIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADR 120
GGPENPLL IGPG G ASFD FG KYQNRRTM+SSDR+L++A +EI+SMADR
Sbjct: 67 GGPENPLLXXX-XXXXIGPGTGSASFDAFGAPKYQNRRTMSSSDRSLISAFKEISSMADR 125
Query: 121 INLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKIS 180
INL KTIVDRANNLFKQVHDGKNLKGRSNDA ASACLYIACRQEGVPRTFKEICAVSKIS
Sbjct: 126 INLPKTIVDRANNLFKQVHDGKNLKGRSNDAKASACLYIACRQEGVPRTFKEICAVSKIS 185
Query: 181 KKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPG 240
KKEIGRCFKL LKALETSVDLITT DFM RFC+NL LPNMVQ+AATHIA+KAVE+DIVPG
Sbjct: 186 KKEIGRCFKLTLKALETSVDLITTADFMCRFCANLDLPNMVQRAATHIAKKAVEMDIVPG 245
Query: 241 RSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKLFPQDFVFH 300
RSPISVAAAAIYMASQAS KRSQKEIGDIAGVA+VTIRQSYKLMYPHA+KLFP+DF F
Sbjct: 246 RSPISVAAAAIYMASQASEHKRSQKEIGDIAGVADVTIRQSYKLMYPHAAKLFPEDFKFT 305
Query: 301 TPIHELPQL 309
TPI +LPQ+
Sbjct: 306 TPIDQLPQM 314
>gi|321461615|gb|EFX72645.1| hypothetical protein DAPPUDRAFT_325996 [Daphnia pulex]
Length = 318
Score = 545 bits (1405), Expect = e-153, Method: Compositional matrix adjust.
Identities = 260/307 (84%), Positives = 284/307 (92%), Gaps = 2/307 (0%)
Query: 5 KVCCYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPE 64
++CC HPDA LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEK+ DPSRVGG E
Sbjct: 12 RICCSAHPDAALIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKANADPSRVGGSE 71
Query: 65 NPLLNGSDLSTMIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADRINLT 124
N LLNG+DLSTMIGPG G ASFD G++KYQNRRTM+SSDRAL+NA +EI++MADRINL
Sbjct: 72 NALLNGTDLSTMIGPGTGSASFDEHGVAKYQNRRTMSSSDRALVNAFKEISNMADRINLP 131
Query: 125 KTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEI 184
+TIVDRANNLFKQVHDGKNLKGRSNDAIASACLYI+CRQEGVPRTFKEICAVSKISKKEI
Sbjct: 132 RTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYISCRQEGVPRTFKEICAVSKISKKEI 191
Query: 185 GRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPI 244
GRCFKLILKALETSVD+ITT DFMSRFCSNL LP MVQ+AA+HIARKAVELDIVPGRSPI
Sbjct: 192 GRCFKLILKALETSVDIITTADFMSRFCSNLGLPTMVQRAASHIARKAVELDIVPGRSPI 251
Query: 245 SVAAAAIYMASQASSD--KRSQKEIGDIAGVAEVTIRQSYKLMYPHASKLFPQDFVFHTP 302
SVAAAAIYMASQAS + K++QKEIGDIAGVA+VTIRQSYKLMYP A++LFP+DF F TP
Sbjct: 252 SVAAAAIYMASQASDEKSKKTQKEIGDIAGVADVTIRQSYKLMYPRAAELFPEDFRFTTP 311
Query: 303 IHELPQL 309
I +LPQL
Sbjct: 312 IEQLPQL 318
>gi|427787821|gb|JAA59362.1| Putative transcription initiation factor tfiib [Rhipicephalus
pulchellus]
Length = 315
Score = 537 bits (1384), Expect = e-150, Method: Compositional matrix adjust.
Identities = 255/305 (83%), Positives = 280/305 (91%)
Query: 4 NKVCCYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGP 63
++V C +HPDA L+EDYRAGD IC +CGLVVGDR++DVG+EWR FSNEKS DP+RVG
Sbjct: 10 SRVFCPDHPDAALVEDYRAGDMICPQCGLVVGDRIVDVGTEWRVFSNEKSNSDPARVGAS 69
Query: 64 ENPLLNGSDLSTMIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADRINL 123
ENPLLNGSDL+TMIG G GDASFD G +KYQNR+TM+S+DRAL+NA REI++MADRINL
Sbjct: 70 ENPLLNGSDLATMIGKGTGDASFDESGTAKYQNRKTMSSADRALMNAFREISNMADRINL 129
Query: 124 TKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKE 183
TKTIVDRAN LFKQVHDGK LKGRSNDAIASACLYIACRQEGVPRTFKEICAVSK+SKKE
Sbjct: 130 TKTIVDRANLLFKQVHDGKTLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKVSKKE 189
Query: 184 IGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSP 243
IGRCFKLILKALETSVDLITTGDFMSRFCSNL LP+ VQKAATHIARKAVELDIVPGRSP
Sbjct: 190 IGRCFKLILKALETSVDLITTGDFMSRFCSNLGLPSSVQKAATHIARKAVELDIVPGRSP 249
Query: 244 ISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKLFPQDFVFHTPI 303
ISVAAAAIYMASQAS DK+SQKEIGDIAGVA+VTIRQSYKLMYP A++LFP+DF F TPI
Sbjct: 250 ISVAAAAIYMASQASEDKKSQKEIGDIAGVADVTIRQSYKLMYPRAAELFPKDFKFFTPI 309
Query: 304 HELPQ 308
+LPQ
Sbjct: 310 EQLPQ 314
>gi|442754741|gb|JAA69530.1| Putative transcription initiation factor tfiib [Ixodes ricinus]
Length = 315
Score = 529 bits (1363), Expect = e-148, Method: Compositional matrix adjust.
Identities = 252/304 (82%), Positives = 276/304 (90%)
Query: 5 KVCCYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPE 64
+V C +HPDA L+EDYRAGD IC +CGLVVGDR++DVG+EWR F NEKS DP+RVG E
Sbjct: 11 RVFCPDHPDAALVEDYRAGDMICPQCGLVVGDRIVDVGTEWRVFPNEKSNNDPARVGASE 70
Query: 65 NPLLNGSDLSTMIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADRINLT 124
NPLLNGSDL+TMIG G GDASFD G +KYQNR+TM+SSDRAL+NA REI++MADRINLT
Sbjct: 71 NPLLNGSDLATMIGKGTGDASFDESGTAKYQNRKTMSSSDRALVNAFREISNMADRINLT 130
Query: 125 KTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEI 184
KTIVDR+N LFKQVHDGK LKGRSNDAIASACLYIACRQEGVPRTFKEICAVSK+SKKEI
Sbjct: 131 KTIVDRSNLLFKQVHDGKTLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKVSKKEI 190
Query: 185 GRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPI 244
GRCFKLILKALETSVDLITTGDFMSRFCSNL LP+ VQKAATHIARKAVELD+V GRSPI
Sbjct: 191 GRCFKLILKALETSVDLITTGDFMSRFCSNLGLPSSVQKAATHIARKAVELDVVSGRSPI 250
Query: 245 SVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKLFPQDFVFHTPIH 304
SVAAAAIYMASQAS DK+SQKEIGDIAGVA+VTIRQSYKLMYP A++LFP DF F TPI
Sbjct: 251 SVAAAAIYMASQASEDKKSQKEIGDIAGVADVTIRQSYKLMYPRAAELFPDDFKFFTPIE 310
Query: 305 ELPQ 308
+LPQ
Sbjct: 311 QLPQ 314
>gi|357624850|gb|EHJ75466.1| hypothetical protein KGM_17256 [Danaus plexippus]
Length = 285
Score = 525 bits (1351), Expect = e-146, Method: Compositional matrix adjust.
Identities = 253/284 (89%), Positives = 268/284 (94%)
Query: 26 ICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLSTMIGPGRGDAS 85
ICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLL+G DLST+IGPGRGDAS
Sbjct: 2 ICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLSGGDLSTIIGPGRGDAS 61
Query: 86 FDGFGMSKYQNRRTMNSSDRALLNAIREINSMADRINLTKTIVDRANNLFKQVHDGKNLK 145
FD FG+SKYQNRR ++S+DRAL+NA REIN+MADRINL KTIVDRANNLFKQVHDGKNLK
Sbjct: 62 FDSFGVSKYQNRRNISSTDRALINAFREINTMADRINLPKTIVDRANNLFKQVHDGKNLK 121
Query: 146 GRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGRCFKLILKALETSVDLITTG 205
GR+NDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGRCFKLILKALETSVDLITT
Sbjct: 122 GRANDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGRCFKLILKALETSVDLITTA 181
Query: 206 DFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQK 265
DFMSRFC+NL LPN VQ+AATHIARKA ELDIV GRSPISVAAAAIYMASQAS DKRSQK
Sbjct: 182 DFMSRFCANLGLPNSVQRAATHIARKAGELDIVSGRSPISVAAAAIYMASQASEDKRSQK 241
Query: 266 EIGDIAGVAEVTIRQSYKLMYPHASKLFPQDFVFHTPIHELPQL 309
EIGDIAGVA+VTIRQSYKLMYP A+KLFP+DF F TPI LPQ+
Sbjct: 242 EIGDIAGVADVTIRQSYKLMYPCAAKLFPEDFKFATPIEFLPQM 285
>gi|224057480|ref|XP_002195495.1| PREDICTED: transcription initiation factor IIB isoform 1
[Taeniopygia guttata]
Length = 316
Score = 514 bits (1325), Expect = e-143, Method: Compositional matrix adjust.
Identities = 247/305 (80%), Positives = 272/305 (89%)
Query: 5 KVCCYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPE 64
+V C HPD+ L+EDYRAGD ICSECGLVVGDRVIDVGSEWRTFSN+K+ DPSRVG +
Sbjct: 12 RVTCPNHPDSILVEDYRAGDMICSECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDTQ 71
Query: 65 NPLLNGSDLSTMIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADRINLT 124
NPLL+ DLSTMIG G G ASFD FG SKYQNRRTM+SSDRA++NA +EI +MADRINL
Sbjct: 72 NPLLSDGDLSTMIGKGTGAASFDEFGNSKYQNRRTMSSSDRAMMNAFKEITNMADRINLP 131
Query: 125 KTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEI 184
+ IVDR NNLFKQV++ K+LKGRSNDAIASACLYIACRQEGVPRTFKEICAVS+ISKKEI
Sbjct: 132 RNIVDRTNNLFKQVYEQKSLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSRISKKEI 191
Query: 185 GRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPI 244
GRCFKLILKALETSVDLITTGDFMSRFCSNL LP VQ AATHIARKAVELD+VPGRSPI
Sbjct: 192 GRCFKLILKALETSVDLITTGDFMSRFCSNLGLPKQVQMAATHIARKAVELDLVPGRSPI 251
Query: 245 SVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKLFPQDFVFHTPIH 304
SVAAAAIYMASQASS+KR+QKEIGDIAGVA+VTIRQSY+L+YP A LFP DF F TP+
Sbjct: 252 SVAAAAIYMASQASSEKRTQKEIGDIAGVADVTIRQSYRLIYPRAPDLFPADFKFDTPVD 311
Query: 305 ELPQL 309
+LPQL
Sbjct: 312 KLPQL 316
>gi|449268065|gb|EMC78935.1| Transcription initiation factor IIB [Columba livia]
Length = 318
Score = 514 bits (1325), Expect = e-143, Method: Compositional matrix adjust.
Identities = 247/305 (80%), Positives = 272/305 (89%)
Query: 5 KVCCYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPE 64
+V C HPD+ L+EDYRAGD ICSECGLVVGDRVIDVGSEWRTFSN+K+ DPSRVG +
Sbjct: 14 RVTCPNHPDSILVEDYRAGDMICSECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDTQ 73
Query: 65 NPLLNGSDLSTMIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADRINLT 124
NPLL+ DLSTMIG G G ASFD FG SKYQNRRTM+SSDRA++NA +EI +MADRINL
Sbjct: 74 NPLLSDGDLSTMIGKGTGAASFDEFGNSKYQNRRTMSSSDRAMMNAFKEITNMADRINLP 133
Query: 125 KTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEI 184
+ IVDR NNLFKQV++ K+LKGRSNDAIASACLYIACRQEGVPRTFKEICAVS+ISKKEI
Sbjct: 134 RNIVDRTNNLFKQVYEQKSLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSRISKKEI 193
Query: 185 GRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPI 244
GRCFKLILKALETSVDLITTGDFMSRFCSNL LP VQ AATHIARKAVELD+VPGRSPI
Sbjct: 194 GRCFKLILKALETSVDLITTGDFMSRFCSNLGLPKQVQMAATHIARKAVELDLVPGRSPI 253
Query: 245 SVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKLFPQDFVFHTPIH 304
SVAAAAIYMASQAS+DKR+QKEIGDIAGVA+VTIRQSY+L+YP A LFP DF F TP+
Sbjct: 254 SVAAAAIYMASQASADKRTQKEIGDIAGVADVTIRQSYRLIYPRAPDLFPADFKFDTPVD 313
Query: 305 ELPQL 309
+LPQL
Sbjct: 314 KLPQL 318
>gi|432911722|ref|XP_004078691.1| PREDICTED: transcription initiation factor IIB-like [Oryzias
latipes]
Length = 318
Score = 514 bits (1325), Expect = e-143, Method: Compositional matrix adjust.
Identities = 245/309 (79%), Positives = 277/309 (89%)
Query: 1 MNINKVCCYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRV 60
+++ +V C HPDA L+EDYRAGD IC ECGLVVGDRVIDVGSEWRTFSNEK+ DPSRV
Sbjct: 10 LSLPRVTCPNHPDAILVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNEKAQKDPSRV 69
Query: 61 GGPENPLLNGSDLSTMIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADR 120
G +NPLLNG DL+TMIG G G ASFD FG SKYQNRRTM+SSDRA+L+A +EI++MADR
Sbjct: 70 GDAQNPLLNGGDLTTMIGKGTGSASFDEFGNSKYQNRRTMSSSDRAMLHAFKEISTMADR 129
Query: 121 INLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKIS 180
INL + IVDR NNLFKQV++ K+LKGR+NDAIASACLYIACRQEGVPRTFKEICAVS+IS
Sbjct: 130 INLPRNIVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFKEICAVSRIS 189
Query: 181 KKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPG 240
KKEIGRCFKLILKALETSVDLITTGDFMSRFCSNL LP VQ AAT IARKAVELD+VPG
Sbjct: 190 KKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLGLPKQVQMAATFIARKAVELDLVPG 249
Query: 241 RSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKLFPQDFVFH 300
RSPISVAAAAIYMASQAS++K++QKEIGDIAGVA+VTIRQSY+L+YP A++LFP DF F
Sbjct: 250 RSPISVAAAAIYMASQASAEKKTQKEIGDIAGVADVTIRQSYRLIYPRAAELFPPDFKFD 309
Query: 301 TPIHELPQL 309
TP+ +LPQL
Sbjct: 310 TPVDKLPQL 318
>gi|213515448|ref|NP_001134769.1| Transcription initiation factor IIB [Salmo salar]
gi|209735868|gb|ACI68803.1| Transcription initiation factor IIB [Salmo salar]
gi|303661887|gb|ADM16053.1| Transcription initiation factor IIB [Salmo salar]
Length = 318
Score = 513 bits (1322), Expect = e-143, Method: Compositional matrix adjust.
Identities = 245/309 (79%), Positives = 274/309 (88%)
Query: 1 MNINKVCCYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRV 60
+ + KV C HPDA L+EDYRAGD IC ECGLVVGDRVIDVGSEWRTF+NEK+ DPSRV
Sbjct: 10 LALPKVQCPNHPDAMLVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFTNEKATQDPSRV 69
Query: 61 GGPENPLLNGSDLSTMIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADR 120
G +NPLLNG DLSTMI G G ASFD FG SKYQNRRTM+SSDRA+LNA +EI +MADR
Sbjct: 70 GDAQNPLLNGGDLSTMISKGTGAASFDEFGNSKYQNRRTMSSSDRAMLNAFKEITTMADR 129
Query: 121 INLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKIS 180
INL + I+DR NNLFKQV++ K+LKGR+NDAIASACLYIACRQEGVPRTFKEICAVS+IS
Sbjct: 130 INLPRNIIDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFKEICAVSRIS 189
Query: 181 KKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPG 240
KKEIGRCFKLILKALETSVDLITTGDFMSRFCSNL LP VQ AAT+IARKAVELD+VPG
Sbjct: 190 KKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLGLPKQVQMAATYIARKAVELDLVPG 249
Query: 241 RSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKLFPQDFVFH 300
RSPISVAAAAIYMASQAS++K++QKEIGDIAGVA+VTIRQSY+L+YP A+ LFP DF F
Sbjct: 250 RSPISVAAAAIYMASQASAEKKTQKEIGDIAGVADVTIRQSYRLIYPRAADLFPPDFKFD 309
Query: 301 TPIHELPQL 309
TP+ +LPQL
Sbjct: 310 TPVDKLPQL 318
>gi|147901135|ref|NP_001081115.1| transcription initiation factor IIB [Xenopus laevis]
gi|135632|sp|P29054.1|TF2B_XENLA RecName: Full=Transcription initiation factor IIB; AltName:
Full=General transcription factor TFIIB
gi|65129|emb|CAA44668.1| TFIIB [Xenopus laevis]
gi|50603693|gb|AAH77495.1| Gtf2b-A protein [Xenopus laevis]
Length = 316
Score = 513 bits (1322), Expect = e-143, Method: Compositional matrix adjust.
Identities = 244/305 (80%), Positives = 272/305 (89%)
Query: 5 KVCCYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPE 64
KV C HPDA L+EDYRAGD ICSECGLVVGDRVIDVGSEWRTFSN+K+ DPSRVG +
Sbjct: 12 KVTCPNHPDALLVEDYRAGDMICSECGLVVGDRVIDVGSEWRTFSNDKAAADPSRVGDAQ 71
Query: 65 NPLLNGSDLSTMIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADRINLT 124
NPLL+G DL+TMIG G G ASFD FG SKYQNRRTM+SSDRA++NA +EI +M+DRINL
Sbjct: 72 NPLLSGGDLTTMIGKGTGSASFDEFGNSKYQNRRTMSSSDRAMMNAFKEITNMSDRINLP 131
Query: 125 KTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEI 184
+ I+DR NNLFKQV++ K+LKGRSNDAIASACLYIACRQEGVPRTFKEICAVS+ISKKEI
Sbjct: 132 RNIIDRTNNLFKQVYEQKSLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSRISKKEI 191
Query: 185 GRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPI 244
GRCFKLILKALET+VDLITTGDFMSRFCSNL L VQ AATHIARKAVELD+VPGRSPI
Sbjct: 192 GRCFKLILKALETNVDLITTGDFMSRFCSNLGLTKQVQMAATHIARKAVELDLVPGRSPI 251
Query: 245 SVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKLFPQDFVFHTPIH 304
SVAAAAIYMASQAS++KR+QKEIGDIAGVA+VTIRQSY+L+YP A LFP DF F TP+
Sbjct: 252 SVAAAAIYMASQASAEKRTQKEIGDIAGVADVTIRQSYRLIYPRAPDLFPADFKFDTPVD 311
Query: 305 ELPQL 309
+LPQL
Sbjct: 312 KLPQL 316
>gi|363736712|ref|XP_422356.3| PREDICTED: transcription initiation factor IIB [Gallus gallus]
Length = 316
Score = 513 bits (1322), Expect = e-143, Method: Compositional matrix adjust.
Identities = 246/305 (80%), Positives = 272/305 (89%)
Query: 5 KVCCYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPE 64
+V C HPD+ L+EDYRAGD ICSECGLVVGDRVIDVGSEWRTFSN+K+ DPSRVG +
Sbjct: 12 RVTCPNHPDSILVEDYRAGDMICSECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDTQ 71
Query: 65 NPLLNGSDLSTMIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADRINLT 124
NPLL+ DLSTMIG G G ASFD FG SKYQNRRTM+SSDRA++NA +EI +MADRINL
Sbjct: 72 NPLLSDGDLSTMIGKGTGAASFDEFGNSKYQNRRTMSSSDRAMMNAFKEITNMADRINLP 131
Query: 125 KTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEI 184
+ IVDR NNLFKQV++ K+LKGRSNDAIASACLYIACRQEGVPRTFKEICAVS+ISKKEI
Sbjct: 132 RNIVDRTNNLFKQVYEQKSLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSRISKKEI 191
Query: 185 GRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPI 244
GRCFKLILKALETSVDLITTGDFMSRFCSNL LP VQ AATHIARKAVELD+VPGRSPI
Sbjct: 192 GRCFKLILKALETSVDLITTGDFMSRFCSNLGLPKQVQMAATHIARKAVELDLVPGRSPI 251
Query: 245 SVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKLFPQDFVFHTPIH 304
SVAAAAIYMASQAS++KR+QKEIGDIAGVA+VTIRQSY+L+YP A LFP DF F TP+
Sbjct: 252 SVAAAAIYMASQASAEKRTQKEIGDIAGVADVTIRQSYRLIYPRAPDLFPADFKFDTPVD 311
Query: 305 ELPQL 309
+LPQL
Sbjct: 312 KLPQL 316
>gi|62858845|ref|NP_001016277.1| general transcription factor 2B [Xenopus (Silurana) tropicalis]
gi|89266709|emb|CAJ83945.1| general transcription factor IIBgeneral transcription factor IIB
[Xenopus (Silurana) tropicalis]
Length = 316
Score = 513 bits (1322), Expect = e-143, Method: Compositional matrix adjust.
Identities = 245/305 (80%), Positives = 272/305 (89%)
Query: 5 KVCCYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPE 64
KV C HPDA L+EDYRAGD ICSECGLVVGDRVIDVGSEWRTFSN+K+ DPSRVG +
Sbjct: 12 KVTCPNHPDALLVEDYRAGDMICSECGLVVGDRVIDVGSEWRTFSNDKAAKDPSRVGDAQ 71
Query: 65 NPLLNGSDLSTMIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADRINLT 124
NPLL+G DL+TMIG G G ASFD FG +KYQNRRTM+SSDRA++NA +EI +MADRINL
Sbjct: 72 NPLLSGGDLTTMIGKGTGAASFDEFGNNKYQNRRTMSSSDRAMMNAFKEITNMADRINLP 131
Query: 125 KTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEI 184
+ IVDR NNLFKQV++ K+LKGRSNDAIASACLYIACRQEGVPRTFKEICAVS+ISKKEI
Sbjct: 132 RNIVDRTNNLFKQVYEQKSLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSRISKKEI 191
Query: 185 GRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPI 244
GRCFKLILKALET+VDLITTGDFMSRFCSNL L VQ AATHIARKAVELD+VPGRSPI
Sbjct: 192 GRCFKLILKALETNVDLITTGDFMSRFCSNLGLTKQVQMAATHIARKAVELDLVPGRSPI 251
Query: 245 SVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKLFPQDFVFHTPIH 304
SVAAAAIYMASQAS++KR+QKEIGDIAGVA+VTIRQSY+L+YP A LFP DF F TP+
Sbjct: 252 SVAAAAIYMASQASAEKRTQKEIGDIAGVADVTIRQSYRLIYPRAPDLFPADFKFDTPVD 311
Query: 305 ELPQL 309
+LPQL
Sbjct: 312 KLPQL 316
>gi|13591965|ref|NP_112303.1| transcription initiation factor IIB [Rattus norvegicus]
gi|21704076|ref|NP_663521.1| transcription initiation factor IIB [Mus musculus]
gi|51703316|sp|P62916.1|TF2B_RAT RecName: Full=Transcription initiation factor IIB; AltName:
Full=General transcription factor TFIIB; AltName:
Full=RNA polymerase II alpha initiation factor
gi|51703324|sp|P62915.1|TF2B_MOUSE RecName: Full=Transcription initiation factor IIB; AltName:
Full=General transcription factor TFIIB; AltName:
Full=RNA polymerase II alpha initiation factor
gi|55624|emb|CAA46766.1| alpha initiation factor [Rattus norvegicus]
gi|16741677|gb|AAH16637.1| General transcription factor IIB [Mus musculus]
gi|55391522|gb|AAH85345.1| General transcription factor IIB [Rattus norvegicus]
gi|74144729|dbj|BAE27344.1| unnamed protein product [Mus musculus]
gi|74147252|dbj|BAE27522.1| unnamed protein product [Mus musculus]
gi|74195918|dbj|BAE30517.1| unnamed protein product [Mus musculus]
gi|74211309|dbj|BAE26416.1| unnamed protein product [Mus musculus]
gi|74221596|dbj|BAE21509.1| unnamed protein product [Mus musculus]
gi|74226680|dbj|BAE26991.1| unnamed protein product [Mus musculus]
gi|148680097|gb|EDL12044.1| general transcription factor IIB [Mus musculus]
gi|149026117|gb|EDL82360.1| general transcription factor IIB [Rattus norvegicus]
Length = 316
Score = 512 bits (1318), Expect = e-143, Method: Compositional matrix adjust.
Identities = 245/305 (80%), Positives = 271/305 (88%)
Query: 5 KVCCYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPE 64
+V C HPDA L+EDYRAGD IC ECGLVVGDRVIDVGSEWRTFSN+K+ DPSRVG +
Sbjct: 12 RVTCPNHPDAILVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDSQ 71
Query: 65 NPLLNGSDLSTMIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADRINLT 124
NPLL+ DLSTMIG G G ASFD FG SKYQNRRTM+SSDRA++NA +EI +MADRINL
Sbjct: 72 NPLLSDGDLSTMIGKGTGAASFDEFGNSKYQNRRTMSSSDRAMMNAFKEITTMADRINLP 131
Query: 125 KTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEI 184
+ IVDR NNLFKQV++ K+LKGR+NDAIASACLYIACRQEGVPRTFKEICAVS+ISKKEI
Sbjct: 132 RNIVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFKEICAVSRISKKEI 191
Query: 185 GRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPI 244
GRCFKLILKALETSVDLITTGDFMSRFCSNL LP VQ AATHIARKAVELD+VPGRSPI
Sbjct: 192 GRCFKLILKALETSVDLITTGDFMSRFCSNLCLPKQVQMAATHIARKAVELDLVPGRSPI 251
Query: 245 SVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKLFPQDFVFHTPIH 304
SVAAAAIYMASQAS++KR+QKEIGDIAGVA+VTIRQSY+L+YP A LFP DF F TP+
Sbjct: 252 SVAAAAIYMASQASAEKRTQKEIGDIAGVADVTIRQSYRLIYPRAPDLFPSDFKFDTPVD 311
Query: 305 ELPQL 309
+LPQL
Sbjct: 312 KLPQL 316
>gi|291398561|ref|XP_002715921.1| PREDICTED: general transcription factor IIB isoform 1 [Oryctolagus
cuniculus]
Length = 315
Score = 512 bits (1318), Expect = e-143, Method: Compositional matrix adjust.
Identities = 245/309 (79%), Positives = 272/309 (88%)
Query: 1 MNINKVCCYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRV 60
++ KV C HPDA L+EDYRAGD IC ECGLVVGDRVIDVGSEWRTFSN+K+ DPSRV
Sbjct: 7 LDSEKVTCPNHPDAILVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNDKATKDPSRV 66
Query: 61 GGPENPLLNGSDLSTMIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADR 120
G +NPLL+ DLSTMIG G G ASFD FG SKYQNRR M+SSDRA++NA +EI +MADR
Sbjct: 67 GDSQNPLLSDGDLSTMIGKGTGAASFDEFGNSKYQNRRAMSSSDRAMMNAFKEITTMADR 126
Query: 121 INLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKIS 180
INL + IVDR NNLFKQV++ K+LKGR+NDAIASACLYIACRQEGVPRTFKEICAVS+IS
Sbjct: 127 INLPRNIVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFKEICAVSRIS 186
Query: 181 KKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPG 240
KKEIGRCFKLILKALETSVDLITTGDFMSRFCSNL LP VQ AATHIARKAVELD+VPG
Sbjct: 187 KKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLCLPKQVQMAATHIARKAVELDLVPG 246
Query: 241 RSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKLFPQDFVFH 300
RSPISVAAAAIYMASQAS++KR+QKEIGDIAGVA+VTIRQSY+L+YP A LFP DF F
Sbjct: 247 RSPISVAAAAIYMASQASAEKRTQKEIGDIAGVADVTIRQSYRLIYPRAPDLFPTDFKFD 306
Query: 301 TPIHELPQL 309
TP+ +LPQL
Sbjct: 307 TPVDKLPQL 315
>gi|4504193|ref|NP_001505.1| transcription initiation factor IIB [Homo sapiens]
gi|197102490|ref|NP_001126175.1| transcription initiation factor IIB [Pongo abelii]
gi|388453639|ref|NP_001253799.1| transcription initiation factor IIB [Macaca mulatta]
gi|57088257|ref|XP_537085.1| PREDICTED: transcription initiation factor IIB isoform 1 [Canis
lupus familiaris]
gi|296208436|ref|XP_002751091.1| PREDICTED: transcription initiation factor IIB [Callithrix jacchus]
gi|301764575|ref|XP_002917714.1| PREDICTED: transcription initiation factor IIB-like [Ailuropoda
melanoleuca]
gi|332809462|ref|XP_001147170.2| PREDICTED: transcription initiation factor IIB [Pan troglodytes]
gi|335287423|ref|XP_001929441.3| PREDICTED: transcription initiation factor IIB [Sus scrofa]
gi|344278936|ref|XP_003411247.1| PREDICTED: transcription initiation factor IIB [Loxodonta africana]
gi|395821801|ref|XP_003784220.1| PREDICTED: transcription initiation factor IIB [Otolemur garnettii]
gi|397473904|ref|XP_003808436.1| PREDICTED: transcription initiation factor IIB [Pan paniscus]
gi|402855161|ref|XP_003892206.1| PREDICTED: transcription initiation factor IIB [Papio anubis]
gi|403305513|ref|XP_003943308.1| PREDICTED: transcription initiation factor IIB [Saimiri boliviensis
boliviensis]
gi|426215922|ref|XP_004002218.1| PREDICTED: transcription initiation factor IIB [Ovis aries]
gi|426330265|ref|XP_004026141.1| PREDICTED: transcription initiation factor IIB [Gorilla gorilla
gorilla]
gi|135629|sp|Q00403.1|TF2B_HUMAN RecName: Full=Transcription initiation factor IIB; AltName:
Full=General transcription factor TFIIB; AltName:
Full=S300-II
gi|71153595|sp|Q5R886.1|TF2B_PONAB RecName: Full=Transcription initiation factor IIB; AltName:
Full=General transcription factor TFIIB
gi|75075384|sp|Q4R3J5.1|TF2B_MACFA RecName: Full=Transcription initiation factor IIB; AltName:
Full=General transcription factor TFIIB
gi|37058|emb|CAA41958.1| IIB protein [Homo sapiens]
gi|339490|gb|AAA61149.1| transcription factor [Homo sapiens]
gi|18088837|gb|AAH20597.1| General transcription factor IIB [Homo sapiens]
gi|55730606|emb|CAH92024.1| hypothetical protein [Pongo abelii]
gi|67971960|dbj|BAE02322.1| unnamed protein product [Macaca fascicularis]
gi|158260667|dbj|BAF82511.1| unnamed protein product [Homo sapiens]
gi|167773977|gb|ABZ92423.1| general transcription factor IIB [synthetic construct]
gi|197692293|dbj|BAG70110.1| general transcription factor IIB [Homo sapiens]
gi|296489281|tpg|DAA31394.1| TPA: transcription initiation factor IIB [Bos taurus]
gi|306921489|dbj|BAJ17824.1| general transcription factor IIB [synthetic construct]
gi|349605874|gb|AEQ00964.1| Transcription initiation factor IIB-like protein [Equus caballus]
gi|380812116|gb|AFE77933.1| transcription initiation factor IIB [Macaca mulatta]
gi|383417803|gb|AFH32115.1| transcription initiation factor IIB [Macaca mulatta]
gi|384946652|gb|AFI36931.1| transcription initiation factor IIB [Macaca mulatta]
gi|410208354|gb|JAA01396.1| general transcription factor IIB [Pan troglodytes]
gi|410257026|gb|JAA16480.1| general transcription factor IIB [Pan troglodytes]
gi|410304078|gb|JAA30639.1| general transcription factor IIB [Pan troglodytes]
gi|410349827|gb|JAA41517.1| general transcription factor IIB [Pan troglodytes]
gi|228040|prf||1715332A transcription initiation factor IIB
Length = 316
Score = 512 bits (1318), Expect = e-142, Method: Compositional matrix adjust.
Identities = 245/305 (80%), Positives = 271/305 (88%)
Query: 5 KVCCYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPE 64
+V C HPDA L+EDYRAGD IC ECGLVVGDRVIDVGSEWRTFSN+K+ DPSRVG +
Sbjct: 12 RVTCPNHPDAILVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDSQ 71
Query: 65 NPLLNGSDLSTMIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADRINLT 124
NPLL+ DLSTMIG G G ASFD FG SKYQNRRTM+SSDRA++NA +EI +MADRINL
Sbjct: 72 NPLLSDGDLSTMIGKGTGAASFDEFGNSKYQNRRTMSSSDRAMMNAFKEITTMADRINLP 131
Query: 125 KTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEI 184
+ IVDR NNLFKQV++ K+LKGR+NDAIASACLYIACRQEGVPRTFKEICAVS+ISKKEI
Sbjct: 132 RNIVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFKEICAVSRISKKEI 191
Query: 185 GRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPI 244
GRCFKLILKALETSVDLITTGDFMSRFCSNL LP VQ AATHIARKAVELD+VPGRSPI
Sbjct: 192 GRCFKLILKALETSVDLITTGDFMSRFCSNLCLPKQVQMAATHIARKAVELDLVPGRSPI 251
Query: 245 SVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKLFPQDFVFHTPIH 304
SVAAAAIYMASQAS++KR+QKEIGDIAGVA+VTIRQSY+L+YP A LFP DF F TP+
Sbjct: 252 SVAAAAIYMASQASAEKRTQKEIGDIAGVADVTIRQSYRLIYPRAPDLFPTDFKFDTPVD 311
Query: 305 ELPQL 309
+LPQL
Sbjct: 312 KLPQL 316
>gi|354495851|ref|XP_003510042.1| PREDICTED: transcription initiation factor IIB-like [Cricetulus
griseus]
Length = 477
Score = 511 bits (1317), Expect = e-142, Method: Compositional matrix adjust.
Identities = 245/305 (80%), Positives = 271/305 (88%)
Query: 5 KVCCYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPE 64
+V C HPDA L+EDYRAGD IC ECGLVVGDRVIDVGSEWRTFSN+K+ DPSRVG +
Sbjct: 173 RVTCPNHPDAILVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDSQ 232
Query: 65 NPLLNGSDLSTMIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADRINLT 124
NPLL+ DLSTMIG G G ASFD FG SKYQNRRTM+SSDRA++NA +EI +MADRINL
Sbjct: 233 NPLLSDGDLSTMIGKGTGAASFDEFGNSKYQNRRTMSSSDRAMMNAFKEITTMADRINLP 292
Query: 125 KTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEI 184
+ IVDR NNLFKQV++ K+LKGR+NDAIASACLYIACRQEGVPRTFKEICAVS+ISKKEI
Sbjct: 293 RNIVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFKEICAVSRISKKEI 352
Query: 185 GRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPI 244
GRCFKLILKALETSVDLITTGDFMSRFCSNL LP VQ AATHIARKAVELD+VPGRSPI
Sbjct: 353 GRCFKLILKALETSVDLITTGDFMSRFCSNLCLPKQVQMAATHIARKAVELDLVPGRSPI 412
Query: 245 SVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKLFPQDFVFHTPIH 304
SVAAAAIYMASQAS++KR+QKEIGDIAGVA+VTIRQSY+L+YP A LFP DF F TP+
Sbjct: 413 SVAAAAIYMASQASAEKRTQKEIGDIAGVADVTIRQSYRLIYPRAPDLFPSDFKFDTPVD 472
Query: 305 ELPQL 309
+LPQL
Sbjct: 473 KLPQL 477
>gi|351705451|gb|EHB08370.1| Transcription initiation factor IIB, partial [Heterocephalus
glaber]
Length = 309
Score = 511 bits (1317), Expect = e-142, Method: Compositional matrix adjust.
Identities = 245/305 (80%), Positives = 271/305 (88%)
Query: 5 KVCCYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPE 64
+V C HPDA L+EDYRAGD IC ECGLVVGDRVIDVGSEWRTFSN+K+ DPSRVG +
Sbjct: 5 RVTCPNHPDAILVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDAQ 64
Query: 65 NPLLNGSDLSTMIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADRINLT 124
NPLL+ DLSTMIG G G ASFD FG SKYQNRRTM+SSDRA++NA +EI +MADRINL
Sbjct: 65 NPLLSNGDLSTMIGKGTGAASFDEFGNSKYQNRRTMSSSDRAMMNAFKEITTMADRINLP 124
Query: 125 KTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEI 184
+ IVDR NNLFKQV++ K+LKGR+NDAIASACLYIACRQEGVPRTFKEICAVS+ISKKEI
Sbjct: 125 RNIVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFKEICAVSRISKKEI 184
Query: 185 GRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPI 244
GRCFKLILKALETSVDLITTGDFMSRFCSNL LP VQ AATHIARKAVELD+VPGRSPI
Sbjct: 185 GRCFKLILKALETSVDLITTGDFMSRFCSNLCLPKQVQMAATHIARKAVELDLVPGRSPI 244
Query: 245 SVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKLFPQDFVFHTPIH 304
SVAAAAIYMASQAS++KR+QKEIGDIAGVA+VTIRQSY+L+YP A LFP DF F TP+
Sbjct: 245 SVAAAAIYMASQASAEKRTQKEIGDIAGVADVTIRQSYRLIYPRAPDLFPSDFKFDTPVD 304
Query: 305 ELPQL 309
+LPQL
Sbjct: 305 KLPQL 309
>gi|126305849|ref|XP_001364333.1| PREDICTED: transcription initiation factor IIB-like [Monodelphis
domestica]
Length = 316
Score = 511 bits (1317), Expect = e-142, Method: Compositional matrix adjust.
Identities = 244/305 (80%), Positives = 271/305 (88%)
Query: 5 KVCCYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPE 64
+V C HPDA L+EDYRAGD IC ECGLVVGDRVIDVGSEWRTFSN+K+ DPSRVG +
Sbjct: 12 RVTCPNHPDAILVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDSQ 71
Query: 65 NPLLNGSDLSTMIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADRINLT 124
NPLL+ DL+TMIG G G ASFD FG SKYQNRRTM+SSDRA++NA +EI +MADRINL
Sbjct: 72 NPLLSDGDLTTMIGKGTGAASFDEFGNSKYQNRRTMSSSDRAMMNAFKEITTMADRINLP 131
Query: 125 KTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEI 184
+ IVDR NNLFKQV++ K+LKGR+NDAIASACLYIACRQEGVPRTFKEICAVS+ISKKEI
Sbjct: 132 RNIVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFKEICAVSRISKKEI 191
Query: 185 GRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPI 244
GRCFKLILKALETSVDLITTGDFMSRFCSNL LP VQ AATHIARKAVELD+VPGRSPI
Sbjct: 192 GRCFKLILKALETSVDLITTGDFMSRFCSNLGLPKQVQMAATHIARKAVELDLVPGRSPI 251
Query: 245 SVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKLFPQDFVFHTPIH 304
SVAAAAIYMASQAS++KR+QKEIGDIAGVA+VTIRQSY+L+YP A LFP DF F TP+
Sbjct: 252 SVAAAAIYMASQASAEKRTQKEIGDIAGVADVTIRQSYRLIYPRAPDLFPADFKFDTPVD 311
Query: 305 ELPQL 309
+LPQL
Sbjct: 312 KLPQL 316
>gi|327270757|ref|XP_003220155.1| PREDICTED: transcription initiation factor IIB-like [Anolis
carolinensis]
Length = 316
Score = 511 bits (1317), Expect = e-142, Method: Compositional matrix adjust.
Identities = 245/305 (80%), Positives = 271/305 (88%)
Query: 5 KVCCYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPE 64
+V C HPD+ L+EDYRAGD IC ECGLVVGDRVIDVGSEWRTFSN+K+ DPSRVG +
Sbjct: 12 RVTCPNHPDSILVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDTQ 71
Query: 65 NPLLNGSDLSTMIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADRINLT 124
NPLL+ DL+TMIG G G ASFD FG SKYQNRRTM+SSDRA++NA +EI SMADRINL
Sbjct: 72 NPLLSDGDLTTMIGKGTGAASFDEFGNSKYQNRRTMSSSDRAMMNAFKEIASMADRINLP 131
Query: 125 KTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEI 184
+ IVDR NNLFKQV++ K+LKGRSNDAIASACLYIACRQEGVPRTFKEICAVS+ISKKEI
Sbjct: 132 RNIVDRTNNLFKQVYEQKSLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSRISKKEI 191
Query: 185 GRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPI 244
GRCFKLILKALETSVDLITTGDFMSRFCSNL LP VQ AATHIARKAVELD+VPGRSPI
Sbjct: 192 GRCFKLILKALETSVDLITTGDFMSRFCSNLGLPKQVQMAATHIARKAVELDLVPGRSPI 251
Query: 245 SVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKLFPQDFVFHTPIH 304
SVAAAAIYMASQAS++KR+QKEIGDIAGVA+VTIRQSY+L+YP A LFP DF F TP+
Sbjct: 252 SVAAAAIYMASQASAEKRTQKEIGDIAGVADVTIRQSYRLIYPRAPDLFPSDFKFDTPVD 311
Query: 305 ELPQL 309
+LPQL
Sbjct: 312 KLPQL 316
>gi|332221838|ref|XP_003260070.1| PREDICTED: transcription initiation factor IIB [Nomascus
leucogenys]
Length = 316
Score = 511 bits (1316), Expect = e-142, Method: Compositional matrix adjust.
Identities = 244/305 (80%), Positives = 271/305 (88%)
Query: 5 KVCCYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPE 64
+V C HPDA L+EDYRAGD +C ECGLVVGDRVIDVGSEWRTFSN+K+ DPSRVG +
Sbjct: 12 RVTCPNHPDAILVEDYRAGDMVCPECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDSQ 71
Query: 65 NPLLNGSDLSTMIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADRINLT 124
NPLL+ DLSTMIG G G ASFD FG SKYQNRRTM+SSDRA++NA +EI +MADRINL
Sbjct: 72 NPLLSDGDLSTMIGKGTGAASFDEFGNSKYQNRRTMSSSDRAMMNAFKEITTMADRINLP 131
Query: 125 KTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEI 184
+ IVDR NNLFKQV++ K+LKGR+NDAIASACLYIACRQEGVPRTFKEICAVS+ISKKEI
Sbjct: 132 RNIVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFKEICAVSRISKKEI 191
Query: 185 GRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPI 244
GRCFKLILKALETSVDLITTGDFMSRFCSNL LP VQ AATHIARKAVELD+VPGRSPI
Sbjct: 192 GRCFKLILKALETSVDLITTGDFMSRFCSNLCLPKQVQMAATHIARKAVELDLVPGRSPI 251
Query: 245 SVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKLFPQDFVFHTPIH 304
SVAAAAIYMASQAS++KR+QKEIGDIAGVA+VTIRQSY+L+YP A LFP DF F TP+
Sbjct: 252 SVAAAAIYMASQASAEKRTQKEIGDIAGVADVTIRQSYRLIYPRAPDLFPTDFKFDTPVD 311
Query: 305 ELPQL 309
+LPQL
Sbjct: 312 KLPQL 316
>gi|281338510|gb|EFB14094.1| hypothetical protein PANDA_006057 [Ailuropoda melanoleuca]
gi|355558148|gb|EHH14928.1| hypothetical protein EGK_00940, partial [Macaca mulatta]
Length = 310
Score = 511 bits (1316), Expect = e-142, Method: Compositional matrix adjust.
Identities = 245/305 (80%), Positives = 271/305 (88%)
Query: 5 KVCCYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPE 64
+V C HPDA L+EDYRAGD IC ECGLVVGDRVIDVGSEWRTFSN+K+ DPSRVG +
Sbjct: 6 RVTCPNHPDAILVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDSQ 65
Query: 65 NPLLNGSDLSTMIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADRINLT 124
NPLL+ DLSTMIG G G ASFD FG SKYQNRRTM+SSDRA++NA +EI +MADRINL
Sbjct: 66 NPLLSDGDLSTMIGKGTGAASFDEFGNSKYQNRRTMSSSDRAMMNAFKEITTMADRINLP 125
Query: 125 KTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEI 184
+ IVDR NNLFKQV++ K+LKGR+NDAIASACLYIACRQEGVPRTFKEICAVS+ISKKEI
Sbjct: 126 RNIVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFKEICAVSRISKKEI 185
Query: 185 GRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPI 244
GRCFKLILKALETSVDLITTGDFMSRFCSNL LP VQ AATHIARKAVELD+VPGRSPI
Sbjct: 186 GRCFKLILKALETSVDLITTGDFMSRFCSNLCLPKQVQMAATHIARKAVELDLVPGRSPI 245
Query: 245 SVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKLFPQDFVFHTPIH 304
SVAAAAIYMASQAS++KR+QKEIGDIAGVA+VTIRQSY+L+YP A LFP DF F TP+
Sbjct: 246 SVAAAAIYMASQASAEKRTQKEIGDIAGVADVTIRQSYRLIYPRAPDLFPTDFKFDTPVD 305
Query: 305 ELPQL 309
+LPQL
Sbjct: 306 KLPQL 310
>gi|254934|gb|AAB23144.1| S300-II [Homo sapiens]
Length = 311
Score = 511 bits (1316), Expect = e-142, Method: Compositional matrix adjust.
Identities = 245/305 (80%), Positives = 271/305 (88%)
Query: 5 KVCCYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPE 64
+V C HPDA L+EDYRAGD IC ECGLVVGDRVIDVGSEWRTFSN+K+ DPSRVG +
Sbjct: 7 RVTCPNHPDAILVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDSQ 66
Query: 65 NPLLNGSDLSTMIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADRINLT 124
NPLL+ DLSTMIG G G ASFD FG SKYQNRRTM+SSDRA++NA +EI +MADRINL
Sbjct: 67 NPLLSDGDLSTMIGKGTGAASFDEFGNSKYQNRRTMSSSDRAMMNAFKEITTMADRINLP 126
Query: 125 KTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEI 184
+ IVDR NNLFKQV++ K+LKGR+NDAIASACLYIACRQEGVPRTFKEICAVS+ISKKEI
Sbjct: 127 RNIVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFKEICAVSRISKKEI 186
Query: 185 GRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPI 244
GRCFKLILKALETSVDLITTGDFMSRFCSNL LP VQ AATHIARKAVELD+VPGRSPI
Sbjct: 187 GRCFKLILKALETSVDLITTGDFMSRFCSNLCLPKQVQMAATHIARKAVELDLVPGRSPI 246
Query: 245 SVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKLFPQDFVFHTPIH 304
SVAAAAIYMASQAS++KR+QKEIGDIAGVA+VTIRQSY+L+YP A LFP DF F TP+
Sbjct: 247 SVAAAAIYMASQASAEKRTQKEIGDIAGVADVTIRQSYRLIYPRAPDLFPTDFKFDTPVD 306
Query: 305 ELPQL 309
+LPQL
Sbjct: 307 KLPQL 311
>gi|326925120|ref|XP_003208769.1| PREDICTED: transcription initiation factor IIB-like [Meleagris
gallopavo]
Length = 353
Score = 511 bits (1316), Expect = e-142, Method: Compositional matrix adjust.
Identities = 246/305 (80%), Positives = 272/305 (89%)
Query: 5 KVCCYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPE 64
+V C HPD+ L+EDYRAGD ICSECGLVVGDRVIDVGSEWRTFSN+K+ DPSRVG +
Sbjct: 49 RVTCPNHPDSILVEDYRAGDMICSECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDTQ 108
Query: 65 NPLLNGSDLSTMIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADRINLT 124
NPLL+ DLSTMIG G G ASFD FG SKYQNRRTM+SSDRA++NA +EI +MADRINL
Sbjct: 109 NPLLSDGDLSTMIGKGTGAASFDEFGNSKYQNRRTMSSSDRAMMNAFKEITNMADRINLP 168
Query: 125 KTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEI 184
+ IVDR NNLFKQV++ K+LKGRSNDAIASACLYIACRQEGVPRTFKEICAVS+ISKKEI
Sbjct: 169 RNIVDRTNNLFKQVYEQKSLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSRISKKEI 228
Query: 185 GRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPI 244
GRCFKLILKALETSVDLITTGDFMSRFCSNL LP VQ AATHIARKAVELD+VPGRSPI
Sbjct: 229 GRCFKLILKALETSVDLITTGDFMSRFCSNLGLPKQVQMAATHIARKAVELDLVPGRSPI 288
Query: 245 SVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKLFPQDFVFHTPIH 304
SVAAAAIYMASQAS++KR+QKEIGDIAGVA+VTIRQSY+L+YP A LFP DF F TP+
Sbjct: 289 SVAAAAIYMASQASAEKRTQKEIGDIAGVADVTIRQSYRLIYPRAPDLFPADFKFDTPVD 348
Query: 305 ELPQL 309
+LPQL
Sbjct: 349 KLPQL 353
>gi|41054405|ref|NP_955991.1| transcription initiation factor IIB [Danio rerio]
gi|33585882|gb|AAH55569.1| General transcription factor IIB [Danio rerio]
Length = 316
Score = 511 bits (1316), Expect = e-142, Method: Compositional matrix adjust.
Identities = 245/308 (79%), Positives = 273/308 (88%)
Query: 2 NINKVCCYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVG 61
++ KV C HPDA L+EDYRAGD IC ECGLVV DRVIDVGSEWRTFSNEK+ DPSRVG
Sbjct: 9 SLPKVQCPNHPDALLVEDYRAGDMICPECGLVVRDRVIDVGSEWRTFSNEKATKDPSRVG 68
Query: 62 GPENPLLNGSDLSTMIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADRI 121
+NPLLNG DL+TMI G G ASFD FG SKYQNRRTM+SSDRA+LNA +EI +MADRI
Sbjct: 69 DAQNPLLNGGDLTTMISKGTGAASFDEFGNSKYQNRRTMSSSDRAMLNAFKEITTMADRI 128
Query: 122 NLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISK 181
NL + I+DR NNLFKQV++ K+LKGRSNDAIASACLYIACRQEGVPRTFKEICAVS+ISK
Sbjct: 129 NLPRNIIDRTNNLFKQVYEQKSLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSRISK 188
Query: 182 KEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGR 241
KEIGRCFKLILKALETSVDLITTGDFMSRFCSNL LP VQ AAT+IARKAVELD+VPGR
Sbjct: 189 KEIGRCFKLILKALETSVDLITTGDFMSRFCSNLGLPKQVQMAATYIARKAVELDLVPGR 248
Query: 242 SPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKLFPQDFVFHT 301
SPISVAAAAIYMASQAS++K++QKEIGDIAGVA+VTIRQSY+L+YP A+ LFP DF F T
Sbjct: 249 SPISVAAAAIYMASQASAEKKTQKEIGDIAGVADVTIRQSYRLIYPRAADLFPPDFKFDT 308
Query: 302 PIHELPQL 309
P+ +LPQL
Sbjct: 309 PVDKLPQL 316
>gi|354801973|gb|AER39748.1| transcription initiation factor IIB [Cyprinus carpio]
Length = 316
Score = 511 bits (1315), Expect = e-142, Method: Compositional matrix adjust.
Identities = 244/308 (79%), Positives = 274/308 (88%)
Query: 2 NINKVCCYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVG 61
++ KV C HPDA L+EDYRAGD IC ECGLVVGDRVIDVGSEWRTF+NEK+ DPSRVG
Sbjct: 9 SLPKVQCPNHPDAILVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFTNEKATNDPSRVG 68
Query: 62 GPENPLLNGSDLSTMIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADRI 121
+NPLLNG DLSTMI G G ASFD FG SKYQNRRTM+S+DRA+LNA +EI +M+DRI
Sbjct: 69 DAQNPLLNGGDLSTMISKGTGAASFDEFGNSKYQNRRTMSSADRAMLNAFKEITTMSDRI 128
Query: 122 NLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISK 181
NL + I+DR NNLFKQV++ K+LKGRSNDAIASACLYIACRQEGVPRTFKEICAVS+ISK
Sbjct: 129 NLPRNIIDRTNNLFKQVYEQKSLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSRISK 188
Query: 182 KEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGR 241
KEIGRCFKLILKALETSVDLITTGDFMSRFCSNL LP VQ AAT+IARKAVELD+VPGR
Sbjct: 189 KEIGRCFKLILKALETSVDLITTGDFMSRFCSNLGLPKQVQIAATYIARKAVELDLVPGR 248
Query: 242 SPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKLFPQDFVFHT 301
SPISVAAAAIYMASQAS++K++QKEIGDIAGVA+VTIRQSY+L+YP A+ LFP DF F T
Sbjct: 249 SPISVAAAAIYMASQASAEKKTQKEIGDIAGVADVTIRQSYRLIYPRAADLFPPDFKFDT 308
Query: 302 PIHELPQL 309
P+ +LPQL
Sbjct: 309 PVDKLPQL 316
>gi|391338244|ref|XP_003743470.1| PREDICTED: transcription initiation factor IIB-like [Metaseiulus
occidentalis]
Length = 314
Score = 511 bits (1315), Expect = e-142, Method: Compositional matrix adjust.
Identities = 241/303 (79%), Positives = 271/303 (89%)
Query: 5 KVCCYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPE 64
+V C +HP+A LIEDYRAGD IC +CGLVVGDR++DVG+EWR F NEKS DP+RVG E
Sbjct: 10 RVFCPDHPEANLIEDYRAGDMICPQCGLVVGDRIVDVGTEWRVFQNEKSSNDPTRVGAAE 69
Query: 65 NPLLNGSDLSTMIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADRINLT 124
NPLLNGSDLST+IG G GDASFD G +KY NR+TM+SSDRAL+ A REI++M DRINLT
Sbjct: 70 NPLLNGSDLSTIIGRGTGDASFDESGNAKYANRKTMSSSDRALIGAFREISAMGDRINLT 129
Query: 125 KTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEI 184
+ I+DR+N LFKQVHDG++LKGRSNDAIASACLYIACRQE VPRTFKEICAVSK+SKKEI
Sbjct: 130 RNIIDRSNALFKQVHDGRSLKGRSNDAIASACLYIACRQESVPRTFKEICAVSKVSKKEI 189
Query: 185 GRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPI 244
GRCFKLILKALETSV+LITTGDFMSRFCSNL+L VQKAATHIARKAVE+DIV GRSPI
Sbjct: 190 GRCFKLILKALETSVELITTGDFMSRFCSNLALSTAVQKAATHIARKAVEMDIVAGRSPI 249
Query: 245 SVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKLFPQDFVFHTPIH 304
SVAAAAIYMASQAS++K+SQKEIGDIAGVAEVTIRQSYK MYP A++LFP+DF FHTPI
Sbjct: 250 SVAAAAIYMASQASAEKKSQKEIGDIAGVAEVTIRQSYKQMYPRAAQLFPEDFKFHTPIE 309
Query: 305 ELP 307
LP
Sbjct: 310 MLP 312
>gi|348500548|ref|XP_003437835.1| PREDICTED: transcription initiation factor IIB-like [Oreochromis
niloticus]
gi|50844459|gb|AAT84346.1| general transcription factor II B [Oreochromis mossambicus]
Length = 318
Score = 511 bits (1315), Expect = e-142, Method: Compositional matrix adjust.
Identities = 245/309 (79%), Positives = 275/309 (88%)
Query: 1 MNINKVCCYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRV 60
+ + +V C HPDA L+EDYRAGD IC ECGLVVGDRVIDVGSEWRTFSNEK+ DPSRV
Sbjct: 10 LALPRVQCPNHPDACLVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNEKALKDPSRV 69
Query: 61 GGPENPLLNGSDLSTMIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADR 120
G +NPLLNG DL+TMI G G ASFD FG SKYQNRRTM+SSDRA+LNA +EI++MADR
Sbjct: 70 GDAQNPLLNGGDLTTMISKGTGAASFDEFGNSKYQNRRTMSSSDRAMLNAFKEISTMADR 129
Query: 121 INLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKIS 180
INL + IVDR NNLFKQV++ K+LKGR+NDAIASACLYIACRQEGVPRTFKEICAVS+IS
Sbjct: 130 INLPRNIVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFKEICAVSRIS 189
Query: 181 KKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPG 240
KKEIGRCFKLILKALETSVDLITTGDFMSRFCSNL LP VQ AAT IARKAVELD+VPG
Sbjct: 190 KKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLGLPKQVQMAATFIARKAVELDLVPG 249
Query: 241 RSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKLFPQDFVFH 300
RSPISVAAAAIYMASQAS++K++QKEIGDIAGVA+VTIRQSY+L+YP A++LFP DF F
Sbjct: 250 RSPISVAAAAIYMASQASAEKKTQKEIGDIAGVADVTIRQSYRLIYPRAAELFPPDFKFD 309
Query: 301 TPIHELPQL 309
TP+ +LPQL
Sbjct: 310 TPVDKLPQL 318
>gi|74228747|dbj|BAE21864.1| unnamed protein product [Mus musculus]
Length = 316
Score = 510 bits (1313), Expect = e-142, Method: Compositional matrix adjust.
Identities = 244/305 (80%), Positives = 271/305 (88%)
Query: 5 KVCCYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPE 64
+V C HPDA L+EDYRAGD IC ECGLVVGDRVIDVGSEWRTFSN+K+ DPSRVG +
Sbjct: 12 RVTCPNHPDAILVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDSQ 71
Query: 65 NPLLNGSDLSTMIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADRINLT 124
NPLL+ DLST+IG G G ASFD FG SKYQNRRTM+SSDRA++NA +EI +MADRINL
Sbjct: 72 NPLLSDGDLSTIIGKGTGAASFDEFGNSKYQNRRTMSSSDRAMMNAFKEITTMADRINLP 131
Query: 125 KTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEI 184
+ IVDR NNLFKQV++ K+LKGR+NDAIASACLYIACRQEGVPRTFKEICAVS+ISKKEI
Sbjct: 132 RNIVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFKEICAVSRISKKEI 191
Query: 185 GRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPI 244
GRCFKLILKALETSVDLITTGDFMSRFCSNL LP VQ AATHIARKAVELD+VPGRSPI
Sbjct: 192 GRCFKLILKALETSVDLITTGDFMSRFCSNLCLPKQVQMAATHIARKAVELDLVPGRSPI 251
Query: 245 SVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKLFPQDFVFHTPIH 304
SVAAAAIYMASQAS++KR+QKEIGDIAGVA+VTIRQSY+L+YP A LFP DF F TP+
Sbjct: 252 SVAAAAIYMASQASAEKRTQKEIGDIAGVADVTIRQSYRLIYPRAPDLFPSDFKFDTPVD 311
Query: 305 ELPQL 309
+LPQL
Sbjct: 312 KLPQL 316
>gi|431897056|gb|ELK06320.1| Transcription initiation factor IIB [Pteropus alecto]
Length = 316
Score = 510 bits (1313), Expect = e-142, Method: Compositional matrix adjust.
Identities = 245/305 (80%), Positives = 270/305 (88%)
Query: 5 KVCCYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPE 64
KV C HPDA L+EDYRAGD IC ECGLVVGDRVIDVGSEWRTFSN+K+ DPSRVG +
Sbjct: 12 KVTCPNHPDAILVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDSQ 71
Query: 65 NPLLNGSDLSTMIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADRINLT 124
NPLL+ LSTMIG G G ASFD FG SKYQNRRTM+SSDRA++NA +EI +MADRINL
Sbjct: 72 NPLLSDGGLSTMIGKGTGAASFDEFGNSKYQNRRTMSSSDRAMMNAFKEITTMADRINLP 131
Query: 125 KTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEI 184
+ IVDR NNLFKQV++ K+LKGR+NDAIASACLYIACRQEGVPRTFKEICAVS+ISKKEI
Sbjct: 132 RNIVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFKEICAVSRISKKEI 191
Query: 185 GRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPI 244
GRCFKLILKALETSVDLITTGDFMSRFCSNL LP VQ AATHIARKAVELD+VPGRSPI
Sbjct: 192 GRCFKLILKALETSVDLITTGDFMSRFCSNLCLPKQVQMAATHIARKAVELDLVPGRSPI 251
Query: 245 SVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKLFPQDFVFHTPIH 304
SVAAAAIYMASQAS++KR+QKEIGDIAGVA+VTIRQSY+L+YP A LFP DF F TP+
Sbjct: 252 SVAAAAIYMASQASAEKRTQKEIGDIAGVADVTIRQSYRLIYPRAPDLFPTDFKFDTPVD 311
Query: 305 ELPQL 309
+LPQL
Sbjct: 312 KLPQL 316
>gi|119593566|gb|EAW73160.1| general transcription factor IIB, isoform CRA_b [Homo sapiens]
Length = 373
Score = 510 bits (1313), Expect = e-142, Method: Compositional matrix adjust.
Identities = 245/307 (79%), Positives = 272/307 (88%)
Query: 3 INKVCCYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGG 62
+ +V C HPDA L+EDYRAGD IC ECGLVVGDRVIDVGSEWRTFSN+K+ DPSRVG
Sbjct: 67 LPRVTCPNHPDAILVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGD 126
Query: 63 PENPLLNGSDLSTMIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADRIN 122
+NPLL+ DLSTMIG G G ASFD FG SKYQNRRTM+SSDRA++NA +EI +MADRIN
Sbjct: 127 SQNPLLSDGDLSTMIGKGTGAASFDEFGNSKYQNRRTMSSSDRAMMNAFKEITTMADRIN 186
Query: 123 LTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKK 182
L + IVDR NNLFKQV++ K+LKGR+NDAIASACLYIACRQEGVPRTFKEICAVS+ISKK
Sbjct: 187 LPRNIVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFKEICAVSRISKK 246
Query: 183 EIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRS 242
EIGRCFKLILKALETSVDLITTGDFMSRFCSNL LP VQ AATHIARKAVELD+VPGRS
Sbjct: 247 EIGRCFKLILKALETSVDLITTGDFMSRFCSNLCLPKQVQMAATHIARKAVELDLVPGRS 306
Query: 243 PISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKLFPQDFVFHTP 302
PISVAAAAIYMASQAS++KR+QKEIGDIAGVA+VTIRQSY+L+YP A LFP DF F TP
Sbjct: 307 PISVAAAAIYMASQASAEKRTQKEIGDIAGVADVTIRQSYRLIYPRAPDLFPTDFKFDTP 366
Query: 303 IHELPQL 309
+ +LPQL
Sbjct: 367 VDKLPQL 373
>gi|291398563|ref|XP_002715922.1| PREDICTED: general transcription factor IIB isoform 2 [Oryctolagus
cuniculus]
Length = 316
Score = 509 bits (1312), Expect = e-142, Method: Compositional matrix adjust.
Identities = 244/305 (80%), Positives = 270/305 (88%)
Query: 5 KVCCYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPE 64
+V C HPDA L+EDYRAGD IC ECGLVVGDRVIDVGSEWRTFSN+K+ DPSRVG +
Sbjct: 12 RVTCPNHPDAILVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDSQ 71
Query: 65 NPLLNGSDLSTMIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADRINLT 124
NPLL+ DLSTMIG G G ASFD FG SKYQNRR M+SSDRA++NA +EI +MADRINL
Sbjct: 72 NPLLSDGDLSTMIGKGTGAASFDEFGNSKYQNRRAMSSSDRAMMNAFKEITTMADRINLP 131
Query: 125 KTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEI 184
+ IVDR NNLFKQV++ K+LKGR+NDAIASACLYIACRQEGVPRTFKEICAVS+ISKKEI
Sbjct: 132 RNIVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFKEICAVSRISKKEI 191
Query: 185 GRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPI 244
GRCFKLILKALETSVDLITTGDFMSRFCSNL LP VQ AATHIARKAVELD+VPGRSPI
Sbjct: 192 GRCFKLILKALETSVDLITTGDFMSRFCSNLCLPKQVQMAATHIARKAVELDLVPGRSPI 251
Query: 245 SVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKLFPQDFVFHTPIH 304
SVAAAAIYMASQAS++KR+QKEIGDIAGVA+VTIRQSY+L+YP A LFP DF F TP+
Sbjct: 252 SVAAAAIYMASQASAEKRTQKEIGDIAGVADVTIRQSYRLIYPRAPDLFPTDFKFDTPVD 311
Query: 305 ELPQL 309
+LPQL
Sbjct: 312 KLPQL 316
>gi|47215967|emb|CAF96369.1| unnamed protein product [Tetraodon nigroviridis]
Length = 344
Score = 509 bits (1312), Expect = e-142, Method: Compositional matrix adjust.
Identities = 243/309 (78%), Positives = 275/309 (88%)
Query: 1 MNINKVCCYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRV 60
+ + +V C HPD+ L+EDYRAGD IC ECGLVVGDRVIDVGSEWRTFSNEK+ DPSRV
Sbjct: 36 LGLPRVQCPNHPDSTLVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNEKALKDPSRV 95
Query: 61 GGPENPLLNGSDLSTMIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADR 120
G +NPLLNG DL+TMIG G G ASFD FG SKYQNRRTM+SSDRA+LNA +EI++MADR
Sbjct: 96 GDAQNPLLNGGDLTTMIGKGTGAASFDEFGNSKYQNRRTMSSSDRAMLNAFKEISTMADR 155
Query: 121 INLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKIS 180
INL + I+DR NNLFKQV++ K+LKGR+NDAIASACLYIACRQEGVPRTFKEICAVS+IS
Sbjct: 156 INLPRNIIDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFKEICAVSRIS 215
Query: 181 KKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPG 240
KKEIGRCFKLILKALETSVDLITTGDFMSRFCSNL LP VQ AAT IARKAVELD+VPG
Sbjct: 216 KKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLGLPKQVQMAATFIARKAVELDLVPG 275
Query: 241 RSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKLFPQDFVFH 300
RSPISVAAAAIYMASQAS++K++QKEIGDIAGVA+VTIRQSY+L+YP A++LFP DF F
Sbjct: 276 RSPISVAAAAIYMASQASAEKKTQKEIGDIAGVADVTIRQSYRLIYPRAAELFPPDFKFD 335
Query: 301 TPIHELPQL 309
TP+ +LP L
Sbjct: 336 TPVDKLPLL 344
>gi|114051409|ref|NP_001039607.1| transcription initiation factor IIB [Bos taurus]
gi|122143863|sp|Q2KIN8.1|TF2B_BOVIN RecName: Full=Transcription initiation factor IIB; AltName:
Full=General transcription factor TFIIB
gi|86438483|gb|AAI12571.1| General transcription factor IIB [Bos taurus]
Length = 316
Score = 509 bits (1312), Expect = e-142, Method: Compositional matrix adjust.
Identities = 244/305 (80%), Positives = 270/305 (88%)
Query: 5 KVCCYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPE 64
+V C HPDA L+EDYRAGD IC ECGLVVGDRVIDVGSEWRTFSN+K+ DPSRVG +
Sbjct: 12 RVTCPNHPDAILVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDSQ 71
Query: 65 NPLLNGSDLSTMIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADRINLT 124
NPLL+ DLSTMIG G G ASFD FG SKYQNRRTM+SSDRA++NA +EI +MADRINL
Sbjct: 72 NPLLSDGDLSTMIGKGTGAASFDEFGNSKYQNRRTMSSSDRAMMNAFKEITTMADRINLP 131
Query: 125 KTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEI 184
+ IVDR NNLFKQV++ K+LKGR+NDAIASACLYIACRQEGVPRTFKEICAVS+ISKKEI
Sbjct: 132 RNIVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFKEICAVSRISKKEI 191
Query: 185 GRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPI 244
GRCFKLILKALETSVDLITTGDFMSRFCSNL LP VQ AATHIARKAVELD+VPGRSPI
Sbjct: 192 GRCFKLILKALETSVDLITTGDFMSRFCSNLCLPKQVQMAATHIARKAVELDLVPGRSPI 251
Query: 245 SVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKLFPQDFVFHTPIH 304
SVA AAIYMASQAS++KR+QKEIGDIAGVA+VTIRQSY+L+YP A LFP DF F TP+
Sbjct: 252 SVAEAAIYMASQASAEKRTQKEIGDIAGVADVTIRQSYRLIYPRAPDLFPTDFKFDTPVD 311
Query: 305 ELPQL 309
+LPQL
Sbjct: 312 KLPQL 316
>gi|338725267|ref|XP_001495317.2| PREDICTED: transcription initiation factor IIB-like [Equus
caballus]
Length = 415
Score = 509 bits (1312), Expect = e-142, Method: Compositional matrix adjust.
Identities = 245/307 (79%), Positives = 272/307 (88%)
Query: 3 INKVCCYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGG 62
+ +V C HPDA L+EDYRAGD IC ECGLVVGDRVIDVGSEWRTFSN+K+ DPSRVG
Sbjct: 109 LPRVTCPNHPDAILVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGD 168
Query: 63 PENPLLNGSDLSTMIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADRIN 122
+NPLL+ DLSTMIG G G ASFD FG SKYQNRRTM+SSDRA++NA +EI +MADRIN
Sbjct: 169 SQNPLLSDGDLSTMIGKGTGAASFDEFGNSKYQNRRTMSSSDRAMMNAFKEITTMADRIN 228
Query: 123 LTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKK 182
L + IVDR NNLFKQV++ K+LKGR+NDAIASACLYIACRQEGVPRTFKEICAVS+ISKK
Sbjct: 229 LPRNIVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFKEICAVSRISKK 288
Query: 183 EIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRS 242
EIGRCFKLILKALETSVDLITTGDFMSRFCSNL LP VQ AATHIARKAVELD+VPGRS
Sbjct: 289 EIGRCFKLILKALETSVDLITTGDFMSRFCSNLCLPKQVQMAATHIARKAVELDLVPGRS 348
Query: 243 PISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKLFPQDFVFHTP 302
PISVAAAAIYMASQAS++KR+QKEIGDIAGVA+VTIRQSY+L+YP A LFP DF F TP
Sbjct: 349 PISVAAAAIYMASQASAEKRTQKEIGDIAGVADVTIRQSYRLIYPRAPDLFPTDFKFDTP 408
Query: 303 IHELPQL 309
+ +LPQL
Sbjct: 409 VDKLPQL 415
>gi|440912096|gb|ELR61695.1| Transcription initiation factor IIB, partial [Bos grunniens mutus]
Length = 310
Score = 509 bits (1311), Expect = e-142, Method: Compositional matrix adjust.
Identities = 244/305 (80%), Positives = 270/305 (88%)
Query: 5 KVCCYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPE 64
+V C HPDA L+EDYRA D IC ECGLVVGDRVIDVGSEWRTFSN+K+ DPSRVG +
Sbjct: 6 RVTCPNHPDAILVEDYRAADMICPECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDSQ 65
Query: 65 NPLLNGSDLSTMIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADRINLT 124
NPLL+ DLSTMIG G G ASFD FG SKYQNRRTM+SSDRA++NA +EI +MADRINL
Sbjct: 66 NPLLSDGDLSTMIGKGTGAASFDEFGNSKYQNRRTMSSSDRAMMNAFKEITTMADRINLP 125
Query: 125 KTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEI 184
+ IVDR NNLFKQV++ K+LKGR+NDAIASACLYIACRQEGVPRTFKEICAVS+ISKKEI
Sbjct: 126 RNIVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFKEICAVSRISKKEI 185
Query: 185 GRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPI 244
GRCFKLILKALETSVDLITTGDFMSRFCSNL LP VQ AATHIARKAVELD+VPGRSPI
Sbjct: 186 GRCFKLILKALETSVDLITTGDFMSRFCSNLCLPKQVQMAATHIARKAVELDLVPGRSPI 245
Query: 245 SVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKLFPQDFVFHTPIH 304
SVAAAAIYMASQAS++KR+QKEIGDIAGVA+VTIRQSY+L+YP A LFP DF F TP+
Sbjct: 246 SVAAAAIYMASQASAEKRTQKEIGDIAGVADVTIRQSYRLIYPRAPDLFPTDFKFDTPVD 305
Query: 305 ELPQL 309
+LPQL
Sbjct: 306 KLPQL 310
>gi|387019195|gb|AFJ51715.1| Transcription initiation factor IIB-like [Crotalus adamanteus]
Length = 316
Score = 509 bits (1311), Expect = e-142, Method: Compositional matrix adjust.
Identities = 244/305 (80%), Positives = 270/305 (88%)
Query: 5 KVCCYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPE 64
+V C HPD+ L+EDYRAGD IC ECGLVVGDRVIDVGSEWRTFSN+K+ DPSRVG +
Sbjct: 12 RVTCPNHPDSTLVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDTQ 71
Query: 65 NPLLNGSDLSTMIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADRINLT 124
NPLL+ DL+TMIG G G ASFD FG SKYQNRRTM+S DRA++NA +EI SMADRINL
Sbjct: 72 NPLLSDGDLTTMIGKGTGAASFDEFGNSKYQNRRTMSSFDRAMMNAFKEIASMADRINLP 131
Query: 125 KTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEI 184
+ IVDR NNLFKQV++ K+LKGRSNDAIASACLYIACRQEGVPRTFKEICAVS+ISKKEI
Sbjct: 132 RNIVDRTNNLFKQVYEQKSLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSRISKKEI 191
Query: 185 GRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPI 244
GRCFKLILKALETSVDLITTGDFMSRFCSNL LP VQ AATHIARKAVELD+VPGRSPI
Sbjct: 192 GRCFKLILKALETSVDLITTGDFMSRFCSNLGLPKQVQMAATHIARKAVELDLVPGRSPI 251
Query: 245 SVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKLFPQDFVFHTPIH 304
SVAAAAIYMASQAS++KR+QKEIGDIAGVA+VTIRQSY+L+YP A LFP DF F TP+
Sbjct: 252 SVAAAAIYMASQASAEKRTQKEIGDIAGVADVTIRQSYRLIYPRAPDLFPADFRFDTPVD 311
Query: 305 ELPQL 309
+LPQL
Sbjct: 312 KLPQL 316
>gi|328703015|ref|XP_001951275.2| PREDICTED: transcription initiation factor IIB-like [Acyrthosiphon
pisum]
Length = 311
Score = 509 bits (1310), Expect = e-142, Method: Compositional matrix adjust.
Identities = 250/309 (80%), Positives = 274/309 (88%), Gaps = 2/309 (0%)
Query: 1 MNINKVCCYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEK--SGVDPS 58
M+ N V C +HPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSN+K + DPS
Sbjct: 1 MSKNLVQCQQHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNDKGANSADPS 60
Query: 59 RVGGPENPLLNGSDLSTMIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMA 118
RVGG ENPLLNGSDLST++GP RGDASFD FG KY+N+ + S++R+LLNA REI MA
Sbjct: 61 RVGGAENPLLNGSDLSTLVGPSRGDASFDEFGGMKYKNKGMVCSTNRSLLNAYREIGLMA 120
Query: 119 DRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSK 178
DRINL + IVDRAN LFKQVHDGKNLKGRSNDAIASA LYIACRQEGVPRTFKEICAVSK
Sbjct: 121 DRINLPRNIVDRANVLFKQVHDGKNLKGRSNDAIASASLYIACRQEGVPRTFKEICAVSK 180
Query: 179 ISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIV 238
+SKKEIGR FKLILKALETSVDLITTGDFMSRFC NL LPNMVQ+AATHIA+KAVE DIV
Sbjct: 181 VSKKEIGRVFKLILKALETSVDLITTGDFMSRFCCNLGLPNMVQRAATHIAKKAVEYDIV 240
Query: 239 PGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKLFPQDFV 298
PGRSPISVAAAAI+MASQAS +KRSQKEIGDIAGVAEVTI+QSYKL+ +A+ LFP+DF
Sbjct: 241 PGRSPISVAAAAIFMASQASDEKRSQKEIGDIAGVAEVTIKQSYKLILANATLLFPEDFK 300
Query: 299 FHTPIHELP 307
F T I +LP
Sbjct: 301 FVTQISDLP 309
>gi|395530416|ref|XP_003767291.1| PREDICTED: transcription initiation factor IIB, partial
[Sarcophilus harrisii]
Length = 343
Score = 509 bits (1310), Expect = e-142, Method: Compositional matrix adjust.
Identities = 243/307 (79%), Positives = 271/307 (88%)
Query: 3 INKVCCYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGG 62
+ +V C HPDA L+EDYRAGD IC ECGLVVGDRVIDVGSEWRTFSN+K+ DPSRVG
Sbjct: 37 LPRVTCPNHPDAILVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGD 96
Query: 63 PENPLLNGSDLSTMIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADRIN 122
+NPLL+ DL+TMIG G G ASFD FG SKYQN RTM+SSDRA++NA +EI +MADRIN
Sbjct: 97 SQNPLLSDGDLTTMIGKGTGAASFDEFGNSKYQNHRTMSSSDRAMMNAFKEITTMADRIN 156
Query: 123 LTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKK 182
L + IVDR NNLFKQV++ K+LKGR+NDAIASACLYIACRQEGVPRTFKEICAVS+ISKK
Sbjct: 157 LPRNIVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFKEICAVSRISKK 216
Query: 183 EIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRS 242
EIGRCFKLILKALETSVDLITTGDFMSRFCSNL LP VQ AATHIARKAVELD+VPGRS
Sbjct: 217 EIGRCFKLILKALETSVDLITTGDFMSRFCSNLGLPKQVQMAATHIARKAVELDLVPGRS 276
Query: 243 PISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKLFPQDFVFHTP 302
PISVAAAAIYMASQAS++KR+QKEIGDIAGVA+VTIRQSY+L+YP A LFP DF F TP
Sbjct: 277 PISVAAAAIYMASQASAEKRTQKEIGDIAGVADVTIRQSYRLIYPRAPDLFPADFKFDTP 336
Query: 303 IHELPQL 309
+ +LPQL
Sbjct: 337 VDKLPQL 343
>gi|432107068|gb|ELK32500.1| Transcription initiation factor IIB, partial [Myotis davidii]
Length = 310
Score = 509 bits (1310), Expect = e-142, Method: Compositional matrix adjust.
Identities = 244/305 (80%), Positives = 271/305 (88%)
Query: 5 KVCCYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPE 64
+V C HPD+ L+EDYRAGD IC ECGLVVGDRVIDVGSEWRTFSN+K+ DPSRVG +
Sbjct: 6 RVTCPNHPDSILVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDSQ 65
Query: 65 NPLLNGSDLSTMIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADRINLT 124
NPLL+ DLSTMIG G G ASFD FG SKYQNRRTM+SSDRA++NA +EI +MADRINL
Sbjct: 66 NPLLSDRDLSTMIGKGTGAASFDEFGNSKYQNRRTMSSSDRAMMNAFKEITTMADRINLP 125
Query: 125 KTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEI 184
+ IVDR NNLFKQV++ K+LKGR+NDAIASACLYIACRQEGVPRTFKEICAVS+ISKKEI
Sbjct: 126 RNIVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFKEICAVSRISKKEI 185
Query: 185 GRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPI 244
GRCFKLILKALETSVDLITTGDFMSRFCSNL LP VQ AATHIARKAVELD+VPGRSPI
Sbjct: 186 GRCFKLILKALETSVDLITTGDFMSRFCSNLCLPKQVQMAATHIARKAVELDLVPGRSPI 245
Query: 245 SVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKLFPQDFVFHTPIH 304
SVAAAAIYMASQAS++KR+QKEIGDIAGVA+VTIRQSY+L+YP A LFP DF F TP+
Sbjct: 246 SVAAAAIYMASQASAEKRTQKEIGDIAGVADVTIRQSYRLIYPRAPDLFPPDFKFDTPVD 305
Query: 305 ELPQL 309
+LPQL
Sbjct: 306 KLPQL 310
>gi|410967657|ref|XP_003990334.1| PREDICTED: transcription initiation factor IIB [Felis catus]
Length = 316
Score = 508 bits (1307), Expect = e-141, Method: Compositional matrix adjust.
Identities = 243/299 (81%), Positives = 268/299 (89%)
Query: 11 HPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNG 70
HPDA L+EDYRAGD IC ECGLVVGDRVIDVGSEWRTFSN+K+ DPSRVG +NPLL+
Sbjct: 18 HPDAILVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDSQNPLLSD 77
Query: 71 SDLSTMIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADRINLTKTIVDR 130
DLSTMIG G G ASFD FG SKYQNRRTM+SSDRA++NA +EI +MADRINL + IVDR
Sbjct: 78 GDLSTMIGKGTGAASFDEFGNSKYQNRRTMSSSDRAMMNAFKEITTMADRINLPRNIVDR 137
Query: 131 ANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGRCFKL 190
NNLFKQV++ K+LKGR+NDAIASACLYIACRQEGVPRTFKEICAVS+ISKKEIGRCFKL
Sbjct: 138 TNNLFKQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFKEICAVSRISKKEIGRCFKL 197
Query: 191 ILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAA 250
ILKALETSVDLITTGDFMSRFCSNL LP VQ AATHIARKAVELD+VPGRSPISVAAAA
Sbjct: 198 ILKALETSVDLITTGDFMSRFCSNLCLPKQVQMAATHIARKAVELDLVPGRSPISVAAAA 257
Query: 251 IYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKLFPQDFVFHTPIHELPQL 309
IYMASQAS++KR+QKEIGDIAGVA+VTIRQSY+L+YP A LFP DF F TP+ +LPQL
Sbjct: 258 IYMASQASAEKRTQKEIGDIAGVADVTIRQSYRLIYPRAPDLFPTDFKFDTPVDKLPQL 316
>gi|410924600|ref|XP_003975769.1| PREDICTED: transcription initiation factor IIB-like [Takifugu
rubripes]
Length = 318
Score = 508 bits (1307), Expect = e-141, Method: Compositional matrix adjust.
Identities = 242/309 (78%), Positives = 275/309 (88%)
Query: 1 MNINKVCCYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRV 60
+ + +V C HPD+ L+EDYRAGD IC +CGLVVGDRVIDVGSEWRTFSNEK+ DPSRV
Sbjct: 10 LGLPRVQCPNHPDSILVEDYRAGDMICPDCGLVVGDRVIDVGSEWRTFSNEKALKDPSRV 69
Query: 61 GGPENPLLNGSDLSTMIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADR 120
G +NPLLNG DL+TMIG G G ASFD FG SKYQNRRTM+SSDRA+LNA +EI++MADR
Sbjct: 70 GDAQNPLLNGGDLTTMIGKGTGAASFDEFGNSKYQNRRTMSSSDRAMLNAFKEISTMADR 129
Query: 121 INLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKIS 180
INL + I+DR NNLFKQV++ K+LKGR+NDAIASACLYIACRQEGVPRTFKEICAVS+IS
Sbjct: 130 INLPRNIIDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFKEICAVSRIS 189
Query: 181 KKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPG 240
KKEIGRCFKLILKALETSVDLITTGDFMSRFCSNL LP VQ AAT IARKAVELD+VPG
Sbjct: 190 KKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLGLPKQVQMAATFIARKAVELDLVPG 249
Query: 241 RSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKLFPQDFVFH 300
RSPISVAAAAIYMASQAS++K++QKEIGDIAGVA+VTIRQSY+L+YP A++LFP DF F
Sbjct: 250 RSPISVAAAAIYMASQASAEKKTQKEIGDIAGVADVTIRQSYRLIYPRAAELFPPDFKFD 309
Query: 301 TPIHELPQL 309
TP+ +LP L
Sbjct: 310 TPVDKLPLL 318
>gi|74180816|dbj|BAE25617.1| unnamed protein product [Mus musculus]
Length = 316
Score = 506 bits (1303), Expect = e-141, Method: Compositional matrix adjust.
Identities = 243/305 (79%), Positives = 268/305 (87%)
Query: 5 KVCCYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPE 64
+V C HPDA L+EDYRAGD IC ECGLVVGDRVIDVGSEWRTFSN+K+ DPSRVG +
Sbjct: 12 RVTCPNHPDAILVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDSQ 71
Query: 65 NPLLNGSDLSTMIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADRINLT 124
NPLL+ DLSTMIG G G ASFD FG SKYQNRRTM+SSDRA++NA +EI +MADRINL
Sbjct: 72 NPLLSDGDLSTMIGKGTGAASFDEFGNSKYQNRRTMSSSDRAMMNAFKEITTMADRINLP 131
Query: 125 KTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEI 184
+ IVDR NNLFKQV++ K+LKGR+NDAIA ACLYIACRQEGVPRTFKEICAVS+ISKKEI
Sbjct: 132 RNIVDRTNNLFKQVYEQKSLKGRANDAIAYACLYIACRQEGVPRTFKEICAVSRISKKEI 191
Query: 185 GRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPI 244
GRCFKLILKALETSVDLITTGD MSRFCSNL LP VQ AATHIARKAVELD+VPGRSPI
Sbjct: 192 GRCFKLILKALETSVDLITTGDLMSRFCSNLCLPKQVQMAATHIARKAVELDLVPGRSPI 251
Query: 245 SVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKLFPQDFVFHTPIH 304
SVAAAAIYMASQAS++KR+QKEIGDIAGVA+VTIRQSY+L YP A LFP DF F TP+
Sbjct: 252 SVAAAAIYMASQASAEKRTQKEIGDIAGVADVTIRQSYRLNYPRAPDLFPSDFKFDTPVD 311
Query: 305 ELPQL 309
+LPQL
Sbjct: 312 KLPQL 316
>gi|345329183|ref|XP_001508212.2| PREDICTED: transcription initiation factor IIB-like, partial
[Ornithorhynchus anatinus]
Length = 310
Score = 505 bits (1300), Expect = e-140, Method: Compositional matrix adjust.
Identities = 242/305 (79%), Positives = 269/305 (88%)
Query: 5 KVCCYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPE 64
+V C HPDA L+EDYRAGD IC ECGLVVGDRVIDVGSEWRTFSN+K+ DPSRVG +
Sbjct: 6 RVTCPNHPDAILVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDTQ 65
Query: 65 NPLLNGSDLSTMIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADRINLT 124
NPLL+ DL+TMIG G G ASFD FG SKYQNRRTM+SSDRA++NA +EI +MADRINL
Sbjct: 66 NPLLSDGDLTTMIGKGTGAASFDEFGNSKYQNRRTMSSSDRAIMNAFKEITNMADRINLP 125
Query: 125 KTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEI 184
+ IVDR N LFKQV++ K+LKGR NDAIASACLYIACRQEGVPRTFKEICAVS+ISKKEI
Sbjct: 126 RNIVDRTNTLFKQVYEQKSLKGRCNDAIASACLYIACRQEGVPRTFKEICAVSRISKKEI 185
Query: 185 GRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPI 244
GRCFKLILKALETSVDLITTGDFMSRFCSNL LP VQ AATHIARKAVE+D+VPGRSPI
Sbjct: 186 GRCFKLILKALETSVDLITTGDFMSRFCSNLGLPKQVQMAATHIARKAVEIDLVPGRSPI 245
Query: 245 SVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKLFPQDFVFHTPIH 304
SVAAAAIYMASQAS++KR+QKEIGDIAGVA+VTIRQSY+L+YP A LFP DF F TP+
Sbjct: 246 SVAAAAIYMASQASTEKRTQKEIGDIAGVADVTIRQSYRLIYPRAPDLFPADFKFDTPVD 305
Query: 305 ELPQL 309
+LPQL
Sbjct: 306 KLPQL 310
>gi|348586162|ref|XP_003478838.1| PREDICTED: LOW QUALITY PROTEIN: transcription initiation factor
IIB-like [Cavia porcellus]
Length = 317
Score = 503 bits (1296), Expect = e-140, Method: Compositional matrix adjust.
Identities = 243/306 (79%), Positives = 270/306 (88%), Gaps = 1/306 (0%)
Query: 5 KVCCYEHPDAPLIEDYRAGDQICSEC-GLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGP 63
+V C HPDA L+EDYRAGD IC C GL+VGDRVIDVGSEWRTFSN+K+ DPSRVG
Sbjct: 12 RVTCPNHPDAILVEDYRAGDMICPGCRGLLVGDRVIDVGSEWRTFSNDKATKDPSRVGDA 71
Query: 64 ENPLLNGSDLSTMIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADRINL 123
+NPLL+ DLSTMIG G G ASFD FG SKYQNRRTM+SSDRA++NA +EI +MADRINL
Sbjct: 72 QNPLLSNGDLSTMIGKGTGAASFDEFGNSKYQNRRTMSSSDRAMMNAFKEITTMADRINL 131
Query: 124 TKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKE 183
+ IVDR NNLFKQV++ K+LKGR+NDAIASACLYIACRQEGVPRTFKEICAVS+ISKKE
Sbjct: 132 PRNIVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFKEICAVSRISKKE 191
Query: 184 IGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSP 243
IGRCFKLILKALETSVDLITTGDFMSRFCSNL LP VQ AATHIARKAVELD+VPGRSP
Sbjct: 192 IGRCFKLILKALETSVDLITTGDFMSRFCSNLCLPKQVQMAATHIARKAVELDLVPGRSP 251
Query: 244 ISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKLFPQDFVFHTPI 303
ISVAAAAIYMASQAS++KR+QKEIGDIAGVA+VTIRQSY+L+YP A LFP DF F TP+
Sbjct: 252 ISVAAAAIYMASQASAEKRTQKEIGDIAGVADVTIRQSYRLIYPRAPDLFPSDFKFDTPV 311
Query: 304 HELPQL 309
+LPQL
Sbjct: 312 DKLPQL 317
>gi|21363041|sp|Q9NHP7.1|TF2B_DROVI RecName: Full=Transcription initiation factor IIB; AltName:
Full=General transcription factor TFIIB
gi|8050578|gb|AAF71709.1| transcription factor TFIIB [Drosophila virilis]
Length = 293
Score = 493 bits (1269), Expect = e-137, Method: Compositional matrix adjust.
Identities = 240/306 (78%), Positives = 258/306 (84%), Gaps = 22/306 (7%)
Query: 4 NKVCCYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGP 63
NKVCCY HP++PLIEDYRAGD ICSECGLVVGD GGP
Sbjct: 10 NKVCCYAHPESPLIEDYRAGDMICSECGLVVGDAF----------------------GGP 47
Query: 64 ENPLLNGSDLSTMIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADRINL 123
ENPLL+G LST+IGPG G ASFD FG KY NRRTM SSDR+L++A +EI+SMADRINL
Sbjct: 48 ENPLLSGGHLSTIIGPGTGSASFDAFGAPKYPNRRTMRSSDRSLISAFKEISSMADRINL 107
Query: 124 TKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKE 183
KTIVDRAN LFKQVHDGKNLKGRSNDA ASACLYIACRQEGVPRTFKEICAVSKISKKE
Sbjct: 108 PKTIVDRANTLFKQVHDGKNLKGRSNDAKASACLYIACRQEGVPRTFKEICAVSKISKKE 167
Query: 184 IGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSP 243
IGRCFKL LKALETSVDLITT DFM RFC+NL LPNMVQ+AATHIA+KAVE+DIVPGRSP
Sbjct: 168 IGRCFKLTLKALETSVDLITTADFMCRFCANLDLPNMVQRAATHIAKKAVEMDIVPGRSP 227
Query: 244 ISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKLFPQDFVFHTPI 303
ISVAAAAIYMASQAS KRSQKEIGDIAGVA+VTIRQSYKLMYPHA+KLFP+DF F TPI
Sbjct: 228 ISVAAAAIYMASQASEHKRSQKEIGDIAGVADVTIRQSYKLMYPHAAKLFPEDFKFTTPI 287
Query: 304 HELPQL 309
+LPQ+
Sbjct: 288 DQLPQM 293
>gi|449508196|ref|XP_004176261.1| PREDICTED: transcription initiation factor IIB isoform 2
[Taeniopygia guttata]
Length = 285
Score = 485 bits (1248), Expect = e-134, Method: Compositional matrix adjust.
Identities = 234/284 (82%), Positives = 256/284 (90%)
Query: 26 ICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLSTMIGPGRGDAS 85
ICSECGLVVGDRVIDVGSEWRTFSN+K+ DPSRVG +NPLL+ DLSTMIG G G AS
Sbjct: 2 ICSECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDTQNPLLSDGDLSTMIGKGTGAAS 61
Query: 86 FDGFGMSKYQNRRTMNSSDRALLNAIREINSMADRINLTKTIVDRANNLFKQVHDGKNLK 145
FD FG SKYQNRRTM+SSDRA++NA +EI +MADRINL + IVDR NNLFKQV++ K+LK
Sbjct: 62 FDEFGNSKYQNRRTMSSSDRAMMNAFKEITNMADRINLPRNIVDRTNNLFKQVYEQKSLK 121
Query: 146 GRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGRCFKLILKALETSVDLITTG 205
GRSNDAIASACLYIACRQEGVPRTFKEICAVS+ISKKEIGRCFKLILKALETSVDLITTG
Sbjct: 122 GRSNDAIASACLYIACRQEGVPRTFKEICAVSRISKKEIGRCFKLILKALETSVDLITTG 181
Query: 206 DFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQK 265
DFMSRFCSNL LP VQ AATHIARKAVELD+VPGRSPISVAAAAIYMASQASS+KR+QK
Sbjct: 182 DFMSRFCSNLGLPKQVQMAATHIARKAVELDLVPGRSPISVAAAAIYMASQASSEKRTQK 241
Query: 266 EIGDIAGVAEVTIRQSYKLMYPHASKLFPQDFVFHTPIHELPQL 309
EIGDIAGVA+VTIRQSY+L+YP A LFP DF F TP+ +LPQL
Sbjct: 242 EIGDIAGVADVTIRQSYRLIYPRAPDLFPADFKFDTPVDKLPQL 285
>gi|148224786|ref|NP_001088125.1| general transcription factor 2B [Xenopus laevis]
gi|52430498|gb|AAH82943.1| LOC494830 protein [Xenopus laevis]
Length = 316
Score = 483 bits (1243), Expect = e-134, Method: Compositional matrix adjust.
Identities = 242/305 (79%), Positives = 269/305 (88%)
Query: 5 KVCCYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPE 64
KV C H DA L+EDYRAGD ICSE GLVVGDRV+DVGSEWRTFSN+K+ DPSRVG +
Sbjct: 12 KVTCPNHADALLVEDYRAGDMICSESGLVVGDRVVDVGSEWRTFSNDKAAKDPSRVGDAQ 71
Query: 65 NPLLNGSDLSTMIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADRINLT 124
NPLL+G DL+TMIG G G ASFD FG SKYQNRR M+SSDRA++NA +EI +MADRINL
Sbjct: 72 NPLLSGGDLTTMIGKGTGAASFDEFGNSKYQNRRAMSSSDRAMMNAFKEITTMADRINLP 131
Query: 125 KTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEI 184
+ IVDR NNLFKQV++ K+LKGRSNDAIASACLYIACRQEGVPRTFKEICAVS+ISKKEI
Sbjct: 132 RNIVDRTNNLFKQVYEQKSLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSRISKKEI 191
Query: 185 GRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPI 244
GRCFKLILKALET+VDLITTGDFMSRFCSNL L VQ AATHIARKAVELD+VPGRSPI
Sbjct: 192 GRCFKLILKALETNVDLITTGDFMSRFCSNLGLTKQVQMAATHIARKAVELDLVPGRSPI 251
Query: 245 SVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKLFPQDFVFHTPIH 304
SVAAAAIYMASQAS++KR+QKEIGDIAGVA+VTIRQSY+L+YP A LFP DF F TP+
Sbjct: 252 SVAAAAIYMASQASAEKRTQKEIGDIAGVADVTIRQSYRLIYPRAPDLFPADFKFDTPVD 311
Query: 305 ELPQL 309
+LPQL
Sbjct: 312 KLPQL 316
>gi|119593565|gb|EAW73159.1| general transcription factor IIB, isoform CRA_a [Homo sapiens]
Length = 285
Score = 481 bits (1239), Expect = e-133, Method: Compositional matrix adjust.
Identities = 231/284 (81%), Positives = 255/284 (89%)
Query: 26 ICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLSTMIGPGRGDAS 85
IC ECGLVVGDRVIDVGSEWRTFSN+K+ DPSRVG +NPLL+ DLSTMIG G G AS
Sbjct: 2 ICPECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDSQNPLLSDGDLSTMIGKGTGAAS 61
Query: 86 FDGFGMSKYQNRRTMNSSDRALLNAIREINSMADRINLTKTIVDRANNLFKQVHDGKNLK 145
FD FG SKYQNRRTM+SSDRA++NA +EI +MADRINL + IVDR NNLFKQV++ K+LK
Sbjct: 62 FDEFGNSKYQNRRTMSSSDRAMMNAFKEITTMADRINLPRNIVDRTNNLFKQVYEQKSLK 121
Query: 146 GRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGRCFKLILKALETSVDLITTG 205
GR+NDAIASACLYIACRQEGVPRTFKEICAVS+ISKKEIGRCFKLILKALETSVDLITTG
Sbjct: 122 GRANDAIASACLYIACRQEGVPRTFKEICAVSRISKKEIGRCFKLILKALETSVDLITTG 181
Query: 206 DFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQK 265
DFMSRFCSNL LP VQ AATHIARKAVELD+VPGRSPISVAAAAIYMASQAS++KR+QK
Sbjct: 182 DFMSRFCSNLCLPKQVQMAATHIARKAVELDLVPGRSPISVAAAAIYMASQASAEKRTQK 241
Query: 266 EIGDIAGVAEVTIRQSYKLMYPHASKLFPQDFVFHTPIHELPQL 309
EIGDIAGVA+VTIRQSY+L+YP A LFP DF F TP+ +LPQL
Sbjct: 242 EIGDIAGVADVTIRQSYRLIYPRAPDLFPTDFKFDTPVDKLPQL 285
>gi|344249199|gb|EGW05303.1| Transcription initiation factor IIB [Cricetulus griseus]
Length = 285
Score = 481 bits (1238), Expect = e-133, Method: Compositional matrix adjust.
Identities = 231/284 (81%), Positives = 255/284 (89%)
Query: 26 ICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLSTMIGPGRGDAS 85
IC ECGLVVGDRVIDVGSEWRTFSN+K+ DPSRVG +NPLL+ DLSTMIG G G AS
Sbjct: 2 ICPECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDSQNPLLSDGDLSTMIGKGTGAAS 61
Query: 86 FDGFGMSKYQNRRTMNSSDRALLNAIREINSMADRINLTKTIVDRANNLFKQVHDGKNLK 145
FD FG SKYQNRRTM+SSDRA++NA +EI +MADRINL + IVDR NNLFKQV++ K+LK
Sbjct: 62 FDEFGNSKYQNRRTMSSSDRAMMNAFKEITTMADRINLPRNIVDRTNNLFKQVYEQKSLK 121
Query: 146 GRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGRCFKLILKALETSVDLITTG 205
GR+NDAIASACLYIACRQEGVPRTFKEICAVS+ISKKEIGRCFKLILKALETSVDLITTG
Sbjct: 122 GRANDAIASACLYIACRQEGVPRTFKEICAVSRISKKEIGRCFKLILKALETSVDLITTG 181
Query: 206 DFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQK 265
DFMSRFCSNL LP VQ AATHIARKAVELD+VPGRSPISVAAAAIYMASQAS++KR+QK
Sbjct: 182 DFMSRFCSNLCLPKQVQMAATHIARKAVELDLVPGRSPISVAAAAIYMASQASAEKRTQK 241
Query: 266 EIGDIAGVAEVTIRQSYKLMYPHASKLFPQDFVFHTPIHELPQL 309
EIGDIAGVA+VTIRQSY+L+YP A LFP DF F TP+ +LPQL
Sbjct: 242 EIGDIAGVADVTIRQSYRLIYPRAPDLFPSDFKFDTPVDKLPQL 285
>gi|260797487|ref|XP_002593734.1| hypothetical protein BRAFLDRAFT_117242 [Branchiostoma floridae]
gi|229278962|gb|EEN49745.1| hypothetical protein BRAFLDRAFT_117242 [Branchiostoma floridae]
Length = 319
Score = 480 bits (1235), Expect = e-133, Method: Compositional matrix adjust.
Identities = 241/304 (79%), Positives = 269/304 (88%)
Query: 6 VCCYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPEN 65
VCC EHPDA LIEDYRAGDQICSECGLVVGDRV+DVG+EWRTFSNEKS D SRVG EN
Sbjct: 16 VCCPEHPDAHLIEDYRAGDQICSECGLVVGDRVVDVGTEWRTFSNEKSDKDRSRVGAAEN 75
Query: 66 PLLNGSDLSTMIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADRINLTK 125
PLL+G DLSTMI G A F+ G +KY NRR+M+SSDRAL+NA REI MADRINL +
Sbjct: 76 PLLSGGDLSTMISRPSGSAGFNEDGSAKYHNRRSMSSSDRALVNAFREITGMADRINLPR 135
Query: 126 TIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIG 185
IVDR LFKQV+D K+LKGRSNDAI++ACLYIACRQEGVPRTFKEICA+S++SKKEIG
Sbjct: 136 NIVDRTQMLFKQVNDQKSLKGRSNDAISAACLYIACRQEGVPRTFKEICAISRVSKKEIG 195
Query: 186 RCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPIS 245
R FKLILKALETSV+LITTGDFMSRFCSNL+LP+ VQ+AATHIARKAVELD+VPGRSPIS
Sbjct: 196 RVFKLILKALETSVELITTGDFMSRFCSNLNLPSQVQRAATHIARKAVELDLVPGRSPIS 255
Query: 246 VAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKLFPQDFVFHTPIHE 305
VAAAAIYMASQAS +KR+QKEIGDIAGVA+VTIRQSY+L+YP A +LFP DF FHTPI +
Sbjct: 256 VAAAAIYMASQASEEKRTQKEIGDIAGVADVTIRQSYRLIYPRAHELFPADFTFHTPIDQ 315
Query: 306 LPQL 309
LPQL
Sbjct: 316 LPQL 319
>gi|427777857|gb|JAA54380.1| Putative transcription initiation factor tfiib [Rhipicephalus
pulchellus]
Length = 292
Score = 474 bits (1219), Expect = e-131, Method: Compositional matrix adjust.
Identities = 230/296 (77%), Positives = 251/296 (84%), Gaps = 22/296 (7%)
Query: 13 DAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSD 72
DA L+EDYRAGD IC +CGLVVGDR++DVG+EWR FSNEKS DP+RVG ENPLLNGSD
Sbjct: 18 DAALVEDYRAGDMICPQCGLVVGDRIVDVGTEWRVFSNEKSNSDPARVGASENPLLNGSD 77
Query: 73 LSTMIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADRINLTKTIVDRAN 132
L+TMIG G GDASFD G +KYQNR+TM+S+DRAL+NA REI++MADRINLTKTIVDRAN
Sbjct: 78 LATMIGKGTGDASFDESGTAKYQNRKTMSSADRALMNAFREISNMADRINLTKTIVDRAN 137
Query: 133 NLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGRCFKLIL 192
LFKQVHDGK LKGRSNDAIASACLYIACRQEGVPRTFKEICAVSK+SKKEIGRCFKLIL
Sbjct: 138 LLFKQVHDGKTLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKVSKKEIGRCFKLIL 197
Query: 193 KALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIY 252
KALETSVDLITTGDFMSRFCSNL LP+ VQKAATHIARKAVELDIVPGRSPISVAA
Sbjct: 198 KALETSVDLITTGDFMSRFCSNLGLPSSVQKAATHIARKAVELDIVPGRSPISVAA---- 253
Query: 253 MASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKLFPQDFVFHTPIHELPQ 308
GVA+VTIRQSYKLMYP A++LFP+DF F TPI +LPQ
Sbjct: 254 ------------------XGVADVTIRQSYKLMYPRAAELFPKDFKFFTPIEQLPQ 291
>gi|405962690|gb|EKC28341.1| Transcription initiation factor IIB [Crassostrea gigas]
Length = 319
Score = 474 bits (1219), Expect = e-131, Method: Compositional matrix adjust.
Identities = 240/305 (78%), Positives = 262/305 (85%), Gaps = 2/305 (0%)
Query: 5 KVCCYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPE 64
++ C EHPDAPL+EDY AGD IC ECGLVVGDRV+DVG+EWRTFSN+KS DPSRVG E
Sbjct: 13 QIFCTEHPDAPLVEDYHAGDMICPECGLVVGDRVVDVGTEWRTFSNDKSDKDPSRVGASE 72
Query: 65 NPLLNGSDLSTMIGPGRG--DASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADRIN 122
NPLL G DLSTMI G G + D G Y+NRRT+NSSDRAL+NA REI M DR+N
Sbjct: 73 NPLLEGGDLSTMIATGVGGSEGVLDEHGKPMYRNRRTLNSSDRALINAFREIGQMGDRLN 132
Query: 123 LTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKK 182
L + I DRAN LFKQVH+GK LKGRSNDAIASAC+YIACRQEGVPRTFKEICAVSKISKK
Sbjct: 133 LPRMIADRANTLFKQVHEGKALKGRSNDAIASACMYIACRQEGVPRTFKEICAVSKISKK 192
Query: 183 EIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRS 242
EIGR FKLILK LET+V+LITTGDFMSRFCSNLSLPN VQKAATHIARKAV+LD+ PGRS
Sbjct: 193 EIGRVFKLILKNLETNVELITTGDFMSRFCSNLSLPNSVQKAATHIARKAVDLDLTPGRS 252
Query: 243 PISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKLFPQDFVFHTP 302
PISVAAAAIYMASQAS+DK+SQKEIGDIAGVAEVTIRQSYKLMYP A LFP+DF F TP
Sbjct: 253 PISVAAAAIYMASQASADKKSQKEIGDIAGVAEVTIRQSYKLMYPKAHLLFPEDFDFVTP 312
Query: 303 IHELP 307
I +LP
Sbjct: 313 IEQLP 317
>gi|115702419|ref|XP_796335.2| PREDICTED: transcription initiation factor IIB-like
[Strongylocentrotus purpuratus]
Length = 321
Score = 469 bits (1208), Expect = e-130, Method: Compositional matrix adjust.
Identities = 227/305 (74%), Positives = 262/305 (85%)
Query: 3 INKVCCYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGG 62
++KVCC HP A LIED AGD IC ECGLVV DRVIDVGSEWRTFSN+K+ +DPSRVG
Sbjct: 15 MHKVCCPSHPHANLIEDSHAGDLICPECGLVVADRVIDVGSEWRTFSNDKANIDPSRVGA 74
Query: 63 PENPLLNGSDLSTMIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADRIN 122
ENPLL G+DLST+IG G+ASF+ G KY+++ M+S++R L+NA REI +MADRIN
Sbjct: 75 AENPLLEGNDLSTIIGGVLGNASFNEDGSKKYRSKSNMSSTNRTLINAFREIGAMADRIN 134
Query: 123 LTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKK 182
L KTIVDRA+ LFKQV+D + L+GRSNDAIA+ACLYIACRQEGVPRTFKEICAVS+++K+
Sbjct: 135 LPKTIVDRAHTLFKQVNDQRTLRGRSNDAIAAACLYIACRQEGVPRTFKEICAVSRVNKR 194
Query: 183 EIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRS 242
EIGRCFKLILKALET+V LITTGDFMSRFCSNLSLP VQ+AATHIARKA ELD+V GRS
Sbjct: 195 EIGRCFKLILKALETNVVLITTGDFMSRFCSNLSLPPKVQRAATHIARKADELDLVAGRS 254
Query: 243 PISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKLFPQDFVFHTP 302
PISV AAAIYMASQAS +KRSQKEIG+IAGVA+VTIRQSYKL+YP + LFPQDF F T
Sbjct: 255 PISVTAAAIYMASQASEEKRSQKEIGEIAGVADVTIRQSYKLIYPKSHDLFPQDFQFATK 314
Query: 303 IHELP 307
I +LP
Sbjct: 315 IEDLP 319
>gi|417409265|gb|JAA51147.1| Putative transcription initiation factor tfiib, partial [Desmodus
rotundus]
Length = 276
Score = 466 bits (1199), Expect = e-129, Method: Compositional matrix adjust.
Identities = 224/276 (81%), Positives = 248/276 (89%)
Query: 34 VGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLSTMIGPGRGDASFDGFGMSK 93
+GDRVIDVGSEWRTFSN+K+ DPSRVG +NPLL+ DLSTMIG G G ASFD FG SK
Sbjct: 1 LGDRVIDVGSEWRTFSNDKATKDPSRVGDSQNPLLSDGDLSTMIGKGTGAASFDEFGNSK 60
Query: 94 YQNRRTMNSSDRALLNAIREINSMADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIA 153
YQNRRTM+SSDRA++NA REI +MADRINL + IVDR NNLFKQV++ K+LKGR+NDAIA
Sbjct: 61 YQNRRTMSSSDRAMMNAFREITTMADRINLPRNIVDRTNNLFKQVYEQKSLKGRANDAIA 120
Query: 154 SACLYIACRQEGVPRTFKEICAVSKISKKEIGRCFKLILKALETSVDLITTGDFMSRFCS 213
SACLYIACRQEGVPRTFKEICAVS+ISKKEIGRCFKLILKALETSVDLITTGDFMSRFCS
Sbjct: 121 SACLYIACRQEGVPRTFKEICAVSRISKKEIGRCFKLILKALETSVDLITTGDFMSRFCS 180
Query: 214 NLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGV 273
NL LP VQ AATHIARKAVELD+VPGRSPISVAAAAIYMASQAS++KR+QKEIGDIAGV
Sbjct: 181 NLCLPKQVQMAATHIARKAVELDLVPGRSPISVAAAAIYMASQASAEKRTQKEIGDIAGV 240
Query: 274 AEVTIRQSYKLMYPHASKLFPQDFVFHTPIHELPQL 309
A+VTIRQSY+L+YP A LFP DF F TP+ +LPQL
Sbjct: 241 ADVTIRQSYRLIYPRAPDLFPTDFKFDTPVDKLPQL 276
>gi|355745435|gb|EHH50060.1| hypothetical protein EGM_00825 [Macaca fascicularis]
Length = 296
Score = 466 bits (1198), Expect = e-129, Method: Compositional matrix adjust.
Identities = 230/301 (76%), Positives = 256/301 (85%), Gaps = 13/301 (4%)
Query: 9 YEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLL 68
+ P APL C +C VGDRVIDVGSEWRTFSN+K+ DPSRVG +NPLL
Sbjct: 9 FSRPVAPL----------CYDC---VGDRVIDVGSEWRTFSNDKATKDPSRVGDSQNPLL 55
Query: 69 NGSDLSTMIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADRINLTKTIV 128
+ DLSTMIG G G ASFD FG SKYQNRRTM+SSDRA++NA +EI +MADRINL + IV
Sbjct: 56 SDGDLSTMIGKGTGAASFDEFGNSKYQNRRTMSSSDRAMMNAFKEITTMADRINLPRNIV 115
Query: 129 DRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGRCF 188
DR NNLFKQV++ K+LKGR+NDAIASACLYIACRQEGVPRTFKEICAVS+ISKKEIGRCF
Sbjct: 116 DRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFKEICAVSRISKKEIGRCF 175
Query: 189 KLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAA 248
KLILKALETSVDLITTGDFMSRFCSNL LP VQ AATHIARKAVELD+VPGRSPISVAA
Sbjct: 176 KLILKALETSVDLITTGDFMSRFCSNLCLPKQVQMAATHIARKAVELDLVPGRSPISVAA 235
Query: 249 AAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKLFPQDFVFHTPIHELPQ 308
AAIYMASQAS++KR+QKEIGDIAGVA+VTIRQSY+L+YP A LFP DF F TP+ +LPQ
Sbjct: 236 AAIYMASQASAEKRTQKEIGDIAGVADVTIRQSYRLIYPRAPDLFPTDFKFDTPVDKLPQ 295
Query: 309 L 309
L
Sbjct: 296 L 296
>gi|444512968|gb|ELV10226.1| Transcription initiation factor IIB [Tupaia chinensis]
Length = 298
Score = 463 bits (1192), Expect = e-128, Method: Compositional matrix adjust.
Identities = 222/277 (80%), Positives = 248/277 (89%)
Query: 33 VVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLSTMIGPGRGDASFDGFGMS 92
+ GDRVIDVGSEWRTFSN+K+ DPSRVG +NPLL+ DLSTMIG G G ASFD FG S
Sbjct: 22 IPGDRVIDVGSEWRTFSNDKATKDPSRVGDSQNPLLSDGDLSTMIGKGTGAASFDEFGNS 81
Query: 93 KYQNRRTMNSSDRALLNAIREINSMADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAI 152
KYQNRRTM+SSDRA++NA +EI +MADRINL + I+DR NNLFKQV++ K+LKGR+NDAI
Sbjct: 82 KYQNRRTMSSSDRAMMNAFKEITTMADRINLPRNIIDRTNNLFKQVYEQKSLKGRANDAI 141
Query: 153 ASACLYIACRQEGVPRTFKEICAVSKISKKEIGRCFKLILKALETSVDLITTGDFMSRFC 212
ASACLYIACRQEGVPRTFKEICAVS+ISKKEIGRCFKLILKALETSVDLITTGDFMSRFC
Sbjct: 142 ASACLYIACRQEGVPRTFKEICAVSRISKKEIGRCFKLILKALETSVDLITTGDFMSRFC 201
Query: 213 SNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAG 272
SNL LP VQ AATHIARKAVELD+VPGRSPISVAAAAIYMASQAS++KR+QKEIGDIAG
Sbjct: 202 SNLCLPKQVQMAATHIARKAVELDLVPGRSPISVAAAAIYMASQASAEKRTQKEIGDIAG 261
Query: 273 VAEVTIRQSYKLMYPHASKLFPQDFVFHTPIHELPQL 309
VA+VTIRQSY+L+YP A LFP DF F TP+ +LPQL
Sbjct: 262 VADVTIRQSYRLIYPRAPDLFPTDFKFDTPVDKLPQL 298
>gi|291232704|ref|XP_002736287.1| PREDICTED: general transcription factor IIB-like [Saccoglossus
kowalevskii]
Length = 315
Score = 460 bits (1184), Expect = e-127, Method: Compositional matrix adjust.
Identities = 229/305 (75%), Positives = 264/305 (86%)
Query: 4 NKVCCYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGP 63
+++ C HP+A L+EDY AGD ICSECGLVVGDRV+DVGSEWRTFSN+K+ DP RVG
Sbjct: 10 DRLNCPSHPEATLVEDYHAGDMICSECGLVVGDRVVDVGSEWRTFSNDKAQKDPCRVGES 69
Query: 64 ENPLLNGSDLSTMIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADRINL 123
EN LL+GS+LST+IG G+A F+ G +KY N+RTMNSSDR LLNA REI MADRINL
Sbjct: 70 ENSLLSGSNLSTIIGKPTGNAGFNQDGSAKYHNKRTMNSSDRTLLNAFREIAQMADRINL 129
Query: 124 TKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKE 183
KTIVDR N LFKQVH+ + L+GRSNDAIA+ACLYIACRQEGVPRTFKEICA+S++SKKE
Sbjct: 130 PKTIVDRTNTLFKQVHEQRTLRGRSNDAIAAACLYIACRQEGVPRTFKEICAISRVSKKE 189
Query: 184 IGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSP 243
IGRCFK ILKALETSVDLITTGDFMSRFCSNL LP+ VQKAATHIA+KAVE+D+VPGRSP
Sbjct: 190 IGRCFKEILKALETSVDLITTGDFMSRFCSNLGLPSRVQKAATHIAKKAVEMDLVPGRSP 249
Query: 244 ISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKLFPQDFVFHTPI 303
ISVAAAAIY+ASQAS +K+SQKEIGD+AGVA+VTIRQSY+L++P A LFP+DF F T I
Sbjct: 250 ISVAAAAIYLASQASEEKKSQKEIGDVAGVADVTIRQSYRLIFPKAVSLFPEDFKFATSI 309
Query: 304 HELPQ 308
LPQ
Sbjct: 310 EHLPQ 314
>gi|355693876|gb|AER99482.1| proteinral transcription factor IIB [Mustela putorius furo]
Length = 289
Score = 460 bits (1184), Expect = e-127, Method: Compositional matrix adjust.
Identities = 222/270 (82%), Positives = 243/270 (90%)
Query: 5 KVCCYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPE 64
+V C HPDA L+EDYRAGD IC ECGLVVGDRVIDVGSEWRTFSN+K+ DPSRVG +
Sbjct: 20 RVTCPNHPDAILVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDSQ 79
Query: 65 NPLLNGSDLSTMIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADRINLT 124
NPLL+ DLSTMIG G G ASFD FG SKYQNRRTM+SSDRA++NA +EI +MADRINL
Sbjct: 80 NPLLSDGDLSTMIGKGTGAASFDEFGNSKYQNRRTMSSSDRAMMNAFKEITTMADRINLP 139
Query: 125 KTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEI 184
+ IVDR NNLFKQV++ K+LKGR+NDAIASACLYIACRQEGVPRTFKEICAVS+ISKKEI
Sbjct: 140 RNIVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFKEICAVSRISKKEI 199
Query: 185 GRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPI 244
GRCFKLILKALETSVDLITTGDFMSRFCSNL LP VQ AATHIARKAVELD+VPGRSPI
Sbjct: 200 GRCFKLILKALETSVDLITTGDFMSRFCSNLCLPKQVQMAATHIARKAVELDLVPGRSPI 259
Query: 245 SVAAAAIYMASQASSDKRSQKEIGDIAGVA 274
SVAAAAIYMASQAS++KR+QKEIGDIAGVA
Sbjct: 260 SVAAAAIYMASQASAEKRTQKEIGDIAGVA 289
>gi|195999146|ref|XP_002109441.1| hypothetical protein TRIADDRAFT_53474 [Trichoplax adhaerens]
gi|190587565|gb|EDV27607.1| hypothetical protein TRIADDRAFT_53474 [Trichoplax adhaerens]
Length = 340
Score = 457 bits (1175), Expect = e-126, Method: Compositional matrix adjust.
Identities = 219/304 (72%), Positives = 257/304 (84%), Gaps = 1/304 (0%)
Query: 5 KVCCYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPE 64
++ C HP A LIEDY AGD +C ECGLVVGDR+IDVGSEWRTFSNEK+ DPSRVG E
Sbjct: 35 QIRCPRHPQANLIEDYSAGDIVCPECGLVVGDRIIDVGSEWRTFSNEKARSDPSRVGASE 94
Query: 65 NPLLNGSDLSTMIGPG-RGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADRINL 123
NPLLNGSDL+T+IG G A++D G + Y+NR MN +DR+L+NA +EI +MADRINL
Sbjct: 95 NPLLNGSDLTTVIGKSPSGSAAYDVDGNALYRNRSAMNGTDRSLVNAFQEIATMADRINL 154
Query: 124 TKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKE 183
KTIVDRA LFKQ ++ K+LKGRSNDA+ASA LYIACRQEGVPRTFKEICAVSKISKKE
Sbjct: 155 PKTIVDRAKVLFKQGYELKSLKGRSNDALASASLYIACRQEGVPRTFKEICAVSKISKKE 214
Query: 184 IGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSP 243
IGRCFK ILKALET+V++I+T DFMSRFCSNL+LPN VQKAA+HIA +A+ELD+ PGRSP
Sbjct: 215 IGRCFKAILKALETNVEMISTQDFMSRFCSNLNLPNYVQKAASHIAHRAIELDLAPGRSP 274
Query: 244 ISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKLFPQDFVFHTPI 303
+SV AAAIY+ASQAS K+SQKEIGD+AGVA+VTIRQSY+L+ P + LFP DFVF TPI
Sbjct: 275 VSVTAAAIYLASQASDTKKSQKEIGDVAGVADVTIRQSYRLLLPRSKDLFPADFVFKTPI 334
Query: 304 HELP 307
+LP
Sbjct: 335 DQLP 338
>gi|346465163|gb|AEO32426.1| hypothetical protein [Amblyomma maculatum]
Length = 268
Score = 454 bits (1167), Expect = e-125, Method: Compositional matrix adjust.
Identities = 217/259 (83%), Positives = 237/259 (91%)
Query: 4 NKVCCYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGP 63
++V C +HPDA L+EDYRAGD IC +CGLVVGDR++DVG+EWR F NEKS DP+RVG
Sbjct: 10 SRVFCTDHPDAVLVEDYRAGDMICPQCGLVVGDRIVDVGTEWRVFPNEKSNNDPARVGAA 69
Query: 64 ENPLLNGSDLSTMIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADRINL 123
ENPLLNGSDL+TMIG G GDASFD G +KYQNR+TM+S+DRALLNA REI++MADRINL
Sbjct: 70 ENPLLNGSDLATMIGKGTGDASFDESGTAKYQNRKTMSSADRALLNAFREISNMADRINL 129
Query: 124 TKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKE 183
TKTIVDR+N LFKQVHDGK LKGRSNDAIASACLYIACRQEGVPRTFKEICAVSK+SKKE
Sbjct: 130 TKTIVDRSNLLFKQVHDGKTLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKVSKKE 189
Query: 184 IGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSP 243
IGRCFKLILKALETSVDLITTGDFMSRFCSNL LP+ VQKAATHIARKAVELDIVPGRSP
Sbjct: 190 IGRCFKLILKALETSVDLITTGDFMSRFCSNLGLPSSVQKAATHIARKAVELDIVPGRSP 249
Query: 244 ISVAAAAIYMASQASSDKR 262
ISVAAAAIYMASQAS DK+
Sbjct: 250 ISVAAAAIYMASQASEDKK 268
>gi|198428626|ref|XP_002129417.1| PREDICTED: similar to Transcription initiation factor IIB (General
transcription factor TFIIB) (S300-II) [Ciona
intestinalis]
Length = 314
Score = 453 bits (1166), Expect = e-125, Method: Compositional matrix adjust.
Identities = 218/308 (70%), Positives = 261/308 (84%), Gaps = 1/308 (0%)
Query: 3 INKVCCYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGG 62
++++ C +HPDA L+EDYRAGD IC ECGLVVGDR IDVGSEWRTFSN+K D SRVG
Sbjct: 7 LHQIHCPQHPDAALVEDYRAGDMICPECGLVVGDRTIDVGSEWRTFSNDKDSKDMSRVGD 66
Query: 63 PENPLLNGSDLSTMIG-PGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADRI 121
+NPLL+GSDLST+I P S + G S++ NR+TMN+SDR L++A REI+SMADRI
Sbjct: 67 SQNPLLSGSDLSTIIERPSGPPGSSNDNGFSQFSNRKTMNNSDRVLIHAFREISSMADRI 126
Query: 122 NLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISK 181
+L K IVDR+N LFKQV+D K+L+GR+NDAI++ACLYIACRQEGVPRTFKEICA+S+ISK
Sbjct: 127 SLPKNIVDRSNKLFKQVYDSKSLRGRANDAISAACLYIACRQEGVPRTFKEICAISRISK 186
Query: 182 KEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGR 241
KEIGR FKLI+K LET+V++IT+GDFMSRFCSNL+LP VQ+ AT+IARKAVE D+V GR
Sbjct: 187 KEIGRSFKLIVKNLETNVEVITSGDFMSRFCSNLNLPPYVQRGATYIARKAVEKDLVAGR 246
Query: 242 SPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKLFPQDFVFHT 301
SPISVAAAAIYMASQAS +KRSQKEI +IAGVAEVTIRQSYKLM+P A LFP+DF FH
Sbjct: 247 SPISVAAAAIYMASQASKEKRSQKEISEIAGVAEVTIRQSYKLMHPRAKDLFPEDFNFHI 306
Query: 302 PIHELPQL 309
P+ +LP
Sbjct: 307 PVSQLPTF 314
>gi|156372338|ref|XP_001628995.1| predicted protein [Nematostella vectensis]
gi|156215985|gb|EDO36932.1| predicted protein [Nematostella vectensis]
Length = 310
Score = 449 bits (1155), Expect = e-124, Method: Compositional matrix adjust.
Identities = 228/303 (75%), Positives = 259/303 (85%), Gaps = 2/303 (0%)
Query: 6 VCCYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPEN 65
V C HPDAPLIEDYRAGD ICSECGLVVGDRV+DVGSEWRTFSNEK+ DPSRVG +N
Sbjct: 7 VACRHHPDAPLIEDYRAGDMICSECGLVVGDRVVDVGSEWRTFSNEKATSDPSRVGAAQN 66
Query: 66 PLLNGSDLSTMI-GPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADRINLT 124
PLL+G DLST+I P G+A +GF + + +R M+ +DR+L+NA REI+ MADRINL
Sbjct: 67 PLLSGGDLSTLIEKPSGGNADIEGFART-HNSRSGMSGADRSLMNAFREISIMADRINLP 125
Query: 125 KTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEI 184
+ IVDRAN LFKQVH+ K+LKGRSND IASACLYIACRQEGVPRT KEICA+ KISKKEI
Sbjct: 126 RKIVDRANQLFKQVHEQKSLKGRSNDTIASACLYIACRQEGVPRTLKEICAIGKISKKEI 185
Query: 185 GRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPI 244
GRCFKLILK LETSVDLIT+GDFMSRFCSNL+LP VQKAAT+IAR+AVELD+V GRSPI
Sbjct: 186 GRCFKLILKHLETSVDLITSGDFMSRFCSNLTLPLSVQKAATYIARRAVELDLVAGRSPI 245
Query: 245 SVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKLFPQDFVFHTPIH 304
S+AAAAIYMASQAS +KRSQKEIGDIAGVA+VTIRQSY+L++P A +LFP DF F PI
Sbjct: 246 SIAAAAIYMASQASEEKRSQKEIGDIAGVADVTIRQSYRLLFPKARELFPADFKFAVPIE 305
Query: 305 ELP 307
LP
Sbjct: 306 RLP 308
>gi|321478592|gb|EFX89549.1| hypothetical protein DAPPUDRAFT_303055 [Daphnia pulex]
Length = 311
Score = 442 bits (1136), Expect = e-121, Method: Compositional matrix adjust.
Identities = 226/306 (73%), Positives = 258/306 (84%), Gaps = 4/306 (1%)
Query: 5 KVCCYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPE 64
++CC HPDAPL++D AGDQICSECGLVVGDRV+DVGSEWRTFSNE DPSRVGG E
Sbjct: 7 RICCPSHPDAPLVDDCHAGDQICSECGLVVGDRVVDVGSEWRTFSNEAGNADPSRVGGAE 66
Query: 65 NPLLNGSDLSTMIGPGR--GDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADRIN 122
N LLNG++L+TMIGP G SF+ G + Y+NR+TM+SSDR L+NA +EI++MADRIN
Sbjct: 67 NTLLNGTNLTTMIGPSTSGGGTSFNETGGAVYKNRQTMSSSDRTLVNAFKEISNMADRIN 126
Query: 123 LTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKK 182
L +TIVDRAN LFK VHDGKNLKG S DA ASACLYIACRQEGVPRTFKEICAVSKI KK
Sbjct: 127 LPRTIVDRANLLFKSVHDGKNLKGHSTDASASACLYIACRQEGVPRTFKEICAVSKIGKK 186
Query: 183 EIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRS 242
EIGRCFKLILKALETSV++I T DFM RFCSNL LP +VQ+ A+HI KAVELD+VPGRS
Sbjct: 187 EIGRCFKLILKALETSVEIIKTSDFMPRFCSNLGLPAIVQRNASHIGGKAVELDVVPGRS 246
Query: 243 PISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKLFPQDFVFHTP 302
PISVAAAAIYMAS AS +K ++KEIGDIAGVA+VTIRQSY+LMYP A++LFP DF
Sbjct: 247 PISVAAAAIYMASHASENKLTKKEIGDIAGVADVTIRQSYELMYPRAAELFPSDFKL--I 304
Query: 303 IHELPQ 308
I +LPQ
Sbjct: 305 ISQLPQ 310
>gi|443732672|gb|ELU17299.1| hypothetical protein CAPTEDRAFT_167658 [Capitella teleta]
Length = 285
Score = 441 bits (1135), Expect = e-121, Method: Compositional matrix adjust.
Identities = 223/282 (79%), Positives = 248/282 (87%)
Query: 26 ICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLSTMIGPGRGDAS 85
ICS CGLVVGDRVIDVGSEWRTFSNEK+ D SRVG ENPLL G+DLSTMI G GDAS
Sbjct: 2 ICSVCGLVVGDRVIDVGSEWRTFSNEKNTKDASRVGSAENPLLEGADLSTMISIGTGDAS 61
Query: 86 FDGFGMSKYQNRRTMNSSDRALLNAIREINSMADRINLTKTIVDRANNLFKQVHDGKNLK 145
FD G Y+NRR MNSSDR+++NA +EIN M+DR+NL + I+DRAN LFKQVH+GK+LK
Sbjct: 62 FDDQGKPVYRNRRQMNSSDRSMVNAFKEINQMSDRLNLPRMIMDRANTLFKQVHEGKSLK 121
Query: 146 GRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGRCFKLILKALETSVDLITTG 205
GRSNDAIASACLYIACRQE VPRTFKEICAVSKISKKEIGR FKLILK LETSV+LITTG
Sbjct: 122 GRSNDAIASACLYIACRQEQVPRTFKEICAVSKISKKEIGRAFKLILKNLETSVELITTG 181
Query: 206 DFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQK 265
DFMSRFCSNL LP++VQ+AATHIARKAV+LD+VPGRSPIS+AAAAIYMAS ASSDK+S K
Sbjct: 182 DFMSRFCSNLGLPSVVQRAATHIARKAVDLDLVPGRSPISIAAAAIYMASSASSDKKSAK 241
Query: 266 EIGDIAGVAEVTIRQSYKLMYPHASKLFPQDFVFHTPIHELP 307
EIGDIAGVAEVTIR+SYK MYP A LFP+DF F TP+ +LP
Sbjct: 242 EIGDIAGVAEVTIRESYKRMYPKAHALFPEDFKFATPVDQLP 283
>gi|268565685|ref|XP_002647378.1| C. briggsae CBR-TTB-1 protein [Caenorhabditis briggsae]
Length = 306
Score = 399 bits (1026), Expect = e-109, Method: Compositional matrix adjust.
Identities = 187/302 (61%), Positives = 243/302 (80%), Gaps = 2/302 (0%)
Query: 6 VCCYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPEN 65
V C HPD LIED+RAGD +C CGLVVGDR++DVG+EWR+FSNE+SG DPSRVG PEN
Sbjct: 5 VQCPVHPDVHLIEDHRAGDLVCPACGLVVGDRLVDVGTEWRSFSNERSGNDPSRVGAPEN 64
Query: 66 PLLNGSDLSTMIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADRINLTK 125
PLL G DLST I G G + D ++ Q R++MN++DR + A+ I M++RI+L +
Sbjct: 65 PLLTGGDLSTTIAVGFGGSDSDN-SLANAQ-RKSMNNTDRQMTAAMSLIREMSERIHLPR 122
Query: 126 TIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIG 185
I D A+ +FK V D + L+G++N+A A+ACLYIACR++GVPRTFKEICAVS++SKKEIG
Sbjct: 123 NIQDNASRIFKDVLDSRALRGKNNEAQAAACLYIACRKDGVPRTFKEICAVSRVSKKEIG 182
Query: 186 RCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPIS 245
RCFK+I++ LET+++ IT+ DFMSRFC NL LPN +Q AAT IA++AV++D+V GR+PIS
Sbjct: 183 RCFKIIIRNLETNLEQITSADFMSRFCGNLYLPNSIQAAATRIAKRAVDMDLVAGRTPIS 242
Query: 246 VAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKLFPQDFVFHTPIHE 305
+AAAAIYMASQAS +KRS KEIGD+AG AE+T+RQ+YKL+YP A++LFP+DF F TPI
Sbjct: 243 IAAAAIYMASQASGEKRSAKEIGDVAGAAEITVRQTYKLLYPKAAELFPEDFRFVTPIEA 302
Query: 306 LP 307
LP
Sbjct: 303 LP 304
>gi|170594171|ref|XP_001901837.1| Transcription initiation factor IIB [Brugia malayi]
gi|158590781|gb|EDP29396.1| Transcription initiation factor IIB, putative [Brugia malayi]
Length = 309
Score = 399 bits (1025), Expect = e-109, Method: Compositional matrix adjust.
Identities = 191/302 (63%), Positives = 235/302 (77%), Gaps = 7/302 (2%)
Query: 6 VCCYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPEN 65
V C HP A L+ED+RAGD IC ECGLVVGDR++DVG+EWR+FSNEKSG DPSRVG PEN
Sbjct: 13 VECPVHPGAHLVEDHRAGDLICPECGLVVGDRLVDVGTEWRSFSNEKSGADPSRVGAPEN 72
Query: 66 PLLNGSDLSTMIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADRINLTK 125
PLL +DLST I G G G R+ MN+ DR + + I M+ RI+L K
Sbjct: 73 PLLGSADLSTSIAVGFG-------GSETNAQRKNMNNMDRQMSQGLSVIREMSARIHLPK 125
Query: 126 TIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIG 185
+I D A +FK V D K L+G++N+A A+ACLYIACR+EGVPRTFKEICA S++SKKEIG
Sbjct: 126 SIEDGAAKIFKDVLDSKALRGKNNEAQAAACLYIACRKEGVPRTFKEICAASRVSKKEIG 185
Query: 186 RCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPIS 245
RCFKLI+K+LETS++ IT+ DFMSRFC NL LP+ +Q AAT IA+KAVELD+V GRSPIS
Sbjct: 186 RCFKLIIKSLETSLEQITSADFMSRFCGNLGLPHSIQAAATRIAKKAVELDLVAGRSPIS 245
Query: 246 VAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKLFPQDFVFHTPIHE 305
+AAAAIYMASQASS+K++ KEIG+IAG AEVT++Q+YKL+YP A +LFP+DF F T +
Sbjct: 246 IAAAAIYMASQASSNKKTAKEIGEIAGAAEVTVKQTYKLLYPRAGELFPEDFKFTTGVES 305
Query: 306 LP 307
LP
Sbjct: 306 LP 307
>gi|341901067|gb|EGT57002.1| hypothetical protein CAEBREN_14440 [Caenorhabditis brenneri]
Length = 306
Score = 399 bits (1025), Expect = e-109, Method: Compositional matrix adjust.
Identities = 187/302 (61%), Positives = 244/302 (80%), Gaps = 2/302 (0%)
Query: 6 VCCYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPEN 65
V C HPD LIED+RAGD +C CGLVVGDR++DVG+EWR+FSNE+SG DPSRVG PEN
Sbjct: 5 VQCPVHPDVHLIEDHRAGDLVCPACGLVVGDRLVDVGTEWRSFSNERSGNDPSRVGAPEN 64
Query: 66 PLLNGSDLSTMIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADRINLTK 125
PLL+G DLST I G G + D ++ Q R++MN++DR + A+ I M++RI+L +
Sbjct: 65 PLLSGGDLSTTIAVGFGGSDSDN-SLANAQ-RKSMNNTDRQMTAAMSLIREMSERIHLPR 122
Query: 126 TIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIG 185
I + A+ +FK V D + L+G++N+A A+ACLYIACR++GVPRTFKEICAVS++SKKEIG
Sbjct: 123 NIQENASRIFKDVLDSRALRGKNNEAQAAACLYIACRKDGVPRTFKEICAVSRVSKKEIG 182
Query: 186 RCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPIS 245
RCFK+I++ LET+++ IT+ DFMSRFC NL LPN +Q AAT IA++AV++D+V GR+PIS
Sbjct: 183 RCFKIIIRNLETNLEQITSADFMSRFCGNLYLPNSIQAAATRIAKRAVDMDLVAGRTPIS 242
Query: 246 VAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKLFPQDFVFHTPIHE 305
+AAAAIYMASQASS+KRS KEIGD+AG AE+T+RQ+YKL+YP A +LFP+DF F TPI
Sbjct: 243 IAAAAIYMASQASSEKRSAKEIGDVAGAAEITVRQTYKLLYPKADELFPEDFRFVTPIDA 302
Query: 306 LP 307
LP
Sbjct: 303 LP 304
>gi|340376818|ref|XP_003386928.1| PREDICTED: transcription initiation factor IIB-like [Amphimedon
queenslandica]
Length = 324
Score = 398 bits (1023), Expect = e-108, Method: Compositional matrix adjust.
Identities = 191/303 (63%), Positives = 241/303 (79%), Gaps = 3/303 (0%)
Query: 8 CYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPL 67
C +HPDA LIEDY AGD +C ECGLVVGDRVIDVGSEWRTFSNE++ D SRVG ENPL
Sbjct: 22 CNDHPDAHLIEDYHAGDMVCPECGLVVGDRVIDVGSEWRTFSNERNATDRSRVGAAENPL 81
Query: 68 LNGSDLSTMIGP--GRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADRINLTK 125
L+G +LS+ I P GR + G K+ ++ +++ D++L+ A +EI +MADR+NL +
Sbjct: 82 LDGHELSSFIAPVTGRPGTNDSGKSFPKF-SKSGVSAGDKSLMTAFKEIANMADRLNLPR 140
Query: 126 TIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIG 185
+IVDR N LFKQV+D K LKGR+NDA+A+ACLYIACRQE VPR+FKEICAVS+ SKKEIG
Sbjct: 141 SIVDRGNALFKQVNDEKTLKGRANDAVAAACLYIACRQEDVPRSFKEICAVSRHSKKEIG 200
Query: 186 RCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPIS 245
RCFKLI +A +++ ++T DFMSR+C+NL LP VQKAA+ IA+KAVELD+ PGR +S
Sbjct: 201 RCFKLIRQAANPAMNTVSTTDFMSRYCTNLGLPLPVQKAASFIAQKAVELDLAPGRVYLS 260
Query: 246 VAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKLFPQDFVFHTPIHE 305
VAAA+IYMASQAS K++QKE+GD+ GVA+ TIRQSY+L+YP KLFP DF F TP+ E
Sbjct: 261 VAAASIYMASQASDIKKTQKEVGDVVGVADSTIRQSYRLLYPSRHKLFPTDFSFDTPLDE 320
Query: 306 LPQ 308
LP+
Sbjct: 321 LPK 323
>gi|17564892|ref|NP_503146.1| Protein TTB-1 [Caenorhabditis elegans]
gi|21362986|sp|O16991.2|TF2B_CAEEL RecName: Full=Transcription initiation factor IIB; AltName:
Full=General transcription factor TFIIB
gi|351051072|emb|CCD74279.1| Protein TTB-1 [Caenorhabditis elegans]
Length = 306
Score = 398 bits (1022), Expect = e-108, Method: Compositional matrix adjust.
Identities = 188/302 (62%), Positives = 245/302 (81%), Gaps = 2/302 (0%)
Query: 6 VCCYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPEN 65
V C HPD LIED+RAGD +C CGLVVGDR++DVG+EWR+FSNE+SG DPSRVG PEN
Sbjct: 5 VQCPIHPDVHLIEDHRAGDLVCPACGLVVGDRLVDVGTEWRSFSNERSGNDPSRVGAPEN 64
Query: 66 PLLNGSDLSTMIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADRINLTK 125
PLL+G DLST I G G + D ++ Q R++MN++DR + A+ I M++RI+L +
Sbjct: 65 PLLSGGDLSTTIAVGFGGSDSDN-SLANAQ-RKSMNNTDRQMTAAMSLIREMSERIHLPR 122
Query: 126 TIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIG 185
I D A+ +FK V + K L+G++N+A A+ACLYIACR++GVPRTFKEICAVS++SKKEIG
Sbjct: 123 NIQDSASRIFKDVLESKALRGKNNEAQAAACLYIACRKDGVPRTFKEICAVSRVSKKEIG 182
Query: 186 RCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPIS 245
RCFK+I+++LET+++ IT+ DFMSRFC NLSLPN +Q AAT IA+ AV++D+V GR+PIS
Sbjct: 183 RCFKIIVRSLETNLEQITSADFMSRFCGNLSLPNSIQAAATRIAKCAVDMDLVAGRTPIS 242
Query: 246 VAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKLFPQDFVFHTPIHE 305
+AAAAIYMASQAS++KRS KEIGD+AG AE+T+RQ+YKL+YP A +LFP+DF F TPI
Sbjct: 243 IAAAAIYMASQASAEKRSAKEIGDVAGAAEITVRQTYKLLYPKALELFPKDFRFVTPIDA 302
Query: 306 LP 307
LP
Sbjct: 303 LP 304
>gi|393912489|gb|EJD76760.1| hypothetical protein LOAG_16340 [Loa loa]
Length = 453
Score = 397 bits (1020), Expect = e-108, Method: Compositional matrix adjust.
Identities = 191/302 (63%), Positives = 239/302 (79%), Gaps = 2/302 (0%)
Query: 6 VCCYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPEN 65
V C HP A L+ED+RAGD IC ECGLVVGDR++DVG+EWR+FSNEKSG DPSRVG PEN
Sbjct: 152 VECPVHPGAHLVEDHRAGDLICPECGLVVGDRLVDVGTEWRSFSNEKSGADPSRVGAPEN 211
Query: 66 PLLNGSDLSTMIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADRINLTK 125
PLL +DLST I G G + D + ++ Q R+ MN+ DR + + I M+ RI+L K
Sbjct: 212 PLLGSADLSTSIAVGFGGSESD-YSLANAQ-RKNMNNMDRQMSQGLSVIREMSARIHLPK 269
Query: 126 TIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIG 185
+I D A +FK V D K L+G++N+A A+ACLYIACR+EGVPRTFKEICA S++SKKEIG
Sbjct: 270 SIEDGAAKIFKDVLDSKALRGKNNEAQAAACLYIACRKEGVPRTFKEICAASRVSKKEIG 329
Query: 186 RCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPIS 245
RCFKLI+K+LETS++ IT+ DFMSRFC NL LP+ +Q AAT IA+KAVELD+V GRSPIS
Sbjct: 330 RCFKLIIKSLETSLEQITSADFMSRFCGNLGLPHSIQAAATRIAKKAVELDLVAGRSPIS 389
Query: 246 VAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKLFPQDFVFHTPIHE 305
+AAAAIYMASQASS+K++ KEIG+IAG AEVT++Q+YKL+YP A++LFP DF F +
Sbjct: 390 IAAAAIYMASQASSNKKTAKEIGEIAGAAEVTVKQTYKLLYPRAAELFPDDFKFTAGVES 449
Query: 306 LP 307
LP
Sbjct: 450 LP 451
>gi|308507101|ref|XP_003115733.1| CRE-TTB-1 protein [Caenorhabditis remanei]
gi|308256268|gb|EFP00221.1| CRE-TTB-1 protein [Caenorhabditis remanei]
Length = 306
Score = 397 bits (1019), Expect = e-108, Method: Compositional matrix adjust.
Identities = 186/302 (61%), Positives = 244/302 (80%), Gaps = 2/302 (0%)
Query: 6 VCCYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPEN 65
V C HPD LIED+RAGD +C CGLVVGDR++DVG+EWR+FSNE+SG DPSRVG PEN
Sbjct: 5 VQCPIHPDVHLIEDHRAGDLVCPACGLVVGDRLVDVGTEWRSFSNERSGNDPSRVGAPEN 64
Query: 66 PLLNGSDLSTMIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADRINLTK 125
PLL+G DLST I G G + D ++ Q R++MN++DR + A+ I M++RI+L +
Sbjct: 65 PLLSGGDLSTTIAVGFGGSDSDN-SLANAQ-RKSMNNTDRQMTAAMSLIREMSERIHLPR 122
Query: 126 TIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIG 185
I + A+ +FK V D + L+G++N+A A+ACLYIACR++GVPRTFKEICAVS++SKKEIG
Sbjct: 123 NIQENASRIFKDVLDSRALRGKNNEAQAAACLYIACRKDGVPRTFKEICAVSRVSKKEIG 182
Query: 186 RCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPIS 245
RCFK+I++ LET+++ IT+ DFMSRFC NL LPN +Q AAT IA++AV++D+V GR+PIS
Sbjct: 183 RCFKIIIRNLETNLEQITSADFMSRFCGNLYLPNSIQAAATRIAKRAVDMDLVAGRTPIS 242
Query: 246 VAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKLFPQDFVFHTPIHE 305
+AAAAIYMASQAS +KRS KEIGD+AG AE+T+RQ+YKL+YP A++LFP+DF F TPI
Sbjct: 243 IAAAAIYMASQASGEKRSAKEIGDVAGAAEITVRQTYKLLYPKAAELFPEDFRFVTPIDA 302
Query: 306 LP 307
LP
Sbjct: 303 LP 304
>gi|332025651|gb|EGI65813.1| Transcription initiation factor IIB [Acromyrmex echinatior]
Length = 308
Score = 392 bits (1008), Expect = e-107, Method: Compositional matrix adjust.
Identities = 194/218 (88%), Positives = 203/218 (93%), Gaps = 3/218 (1%)
Query: 95 QNRRT---MNSSDRALLNAIREINSMADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDA 151
QN RT M+SSDR LLNA REIN MADRINL KTIVDRAN LFKQVHDGKNLKGR+NDA
Sbjct: 91 QNPRTNDIMSSSDRTLLNAFREINGMADRINLPKTIVDRANTLFKQVHDGKNLKGRANDA 150
Query: 152 IASACLYIACRQEGVPRTFKEICAVSKISKKEIGRCFKLILKALETSVDLITTGDFMSRF 211
IASACLYIACRQEGVPRTFKEICAVSKISKKEIGRCFKLILKALETSVDLITTGDFMSRF
Sbjct: 151 IASACLYIACRQEGVPRTFKEICAVSKISKKEIGRCFKLILKALETSVDLITTGDFMSRF 210
Query: 212 CSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIA 271
CSNL LPNMVQ+AATHIARKAVE+DIVPGRSPISVAAAAIYMASQAS DKRSQKEIGD A
Sbjct: 211 CSNLGLPNMVQRAATHIARKAVEIDIVPGRSPISVAAAAIYMASQASEDKRSQKEIGDTA 270
Query: 272 GVAEVTIRQSYKLMYPHASKLFPQDFVFHTPIHELPQL 309
GVA+VTIRQSYKLMYPHAS+LFP+DF F TPI +LPQ+
Sbjct: 271 GVADVTIRQSYKLMYPHASQLFPEDFRFATPIDQLPQM 308
>gi|312087211|ref|XP_003145382.1| transcription initiation factor IIB [Loa loa]
Length = 312
Score = 392 bits (1008), Expect = e-107, Method: Compositional matrix adjust.
Identities = 190/308 (61%), Positives = 236/308 (76%), Gaps = 6/308 (1%)
Query: 6 VCCYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPEN 65
V C HP A L+ED+RAGD IC ECGLVVGDR++DVG+EWR+FSNEKSG DPSRVG PEN
Sbjct: 3 VECPVHPGAHLVEDHRAGDLICPECGLVVGDRLVDVGTEWRSFSNEKSGADPSRVGAPEN 62
Query: 66 PLLNGSDLSTMIGPGRGDASFDGFGMSKYQ------NRRTMNSSDRALLNAIREINSMAD 119
PLL +DLST I G G + D + R+ MN+ DR + + I M+
Sbjct: 63 PLLGSADLSTSIAVGFGGSESDYRQFIDLRCSLANAQRKNMNNMDRQMSQGLSVIREMSA 122
Query: 120 RINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKI 179
RI+L K+I D A +FK V D K L+G++N+A A+ACLYIACR+EGVPRTFKEICA S++
Sbjct: 123 RIHLPKSIEDGAAKIFKDVLDSKALRGKNNEAQAAACLYIACRKEGVPRTFKEICAASRV 182
Query: 180 SKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVP 239
SKKEIGRCFKLI+K+LETS++ IT+ DFMSRFC NL LP+ +Q AAT IA+KAVELD+V
Sbjct: 183 SKKEIGRCFKLIIKSLETSLEQITSADFMSRFCGNLGLPHSIQAAATRIAKKAVELDLVA 242
Query: 240 GRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKLFPQDFVF 299
GRSPIS+AAAAIYMASQASS+K++ KEIG+IAG AEVT++Q+YKL+YP A++LFP DF F
Sbjct: 243 GRSPISIAAAAIYMASQASSNKKTAKEIGEIAGAAEVTVKQTYKLLYPRAAELFPDDFKF 302
Query: 300 HTPIHELP 307
+ LP
Sbjct: 303 TAGVESLP 310
>gi|313221394|emb|CBY32147.1| unnamed protein product [Oikopleura dioica]
gi|313236423|emb|CBY11740.1| unnamed protein product [Oikopleura dioica]
Length = 314
Score = 389 bits (1000), Expect = e-106, Method: Compositional matrix adjust.
Identities = 195/308 (63%), Positives = 235/308 (76%), Gaps = 8/308 (2%)
Query: 4 NKVCCYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGP 63
+V C HPDA L EDYRAGD IC+ECGLVVGDRVIDVGSEWRTFSN+ D SRVG
Sbjct: 9 QQVRCQYHPDAHLAEDYRAGDMICTECGLVVGDRVIDVGSEWRTFSNDSGSKDRSRVGDV 68
Query: 64 ENPLLN--GSDLSTMIG-PGRG-DASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMAD 119
EN L+ GSDLSTMI P G + +F +RR MN++DRAL A REI +MAD
Sbjct: 69 ENRFLSNSGSDLSTMIAAPTNGAETAFSNLS----HHRRHMNAADRALSAAYREIGAMAD 124
Query: 120 RINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKI 179
R+N ++VDRA FK+ ++ + LKGRSNDAIA+ACLYIACRQEGVPRTFKEICAV +
Sbjct: 125 RMNFPGSLVDRAKVNFKEAYESRQLKGRSNDAIAAACLYIACRQEGVPRTFKEICAVCTV 184
Query: 180 SKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVP 239
KKEIGRCFKLI+K LE SV++IT+ DFM RFC++L L V+ A+ HIA+K+VELD+V
Sbjct: 185 PKKEIGRCFKLIIKTLEKSVNVITSEDFMKRFCNSLRLNRQVEAASIHIAKKSVELDLVG 244
Query: 240 GRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKLFPQDFVF 299
GRSP+S+AAAAIYMASQAS +++ KEIGD+ GVAEVTIRQSYK M+P A LFP++F F
Sbjct: 245 GRSPLSLAAAAIYMASQASETRKTAKEIGDVTGVAEVTIRQSYKQMHPRARDLFPENFKF 304
Query: 300 HTPIHELP 307
PI +LP
Sbjct: 305 AIPIGQLP 312
>gi|351707652|gb|EHB10571.1| Transcription initiation factor IIB [Heterocephalus glaber]
Length = 234
Score = 389 bits (998), Expect = e-105, Method: Compositional matrix adjust.
Identities = 187/230 (81%), Positives = 206/230 (89%)
Query: 80 GRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADRINLTKTIVDRANNLFKQVH 139
G G ASFD FG SKYQNRRTM+ SDRA++NA +E MADRINL + IVDR NNLFKQV+
Sbjct: 5 GTGAASFDEFGNSKYQNRRTMSISDRAMMNAFKETTPMADRINLPRNIVDRTNNLFKQVY 64
Query: 140 DGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGRCFKLILKALETSV 199
+ K+LKGR+NDAIASACLYIACRQEGVPRTFKEICAVS+ISKKEIGRCFKLILKALETSV
Sbjct: 65 EQKSLKGRANDAIASACLYIACRQEGVPRTFKEICAVSRISKKEIGRCFKLILKALETSV 124
Query: 200 DLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASS 259
DLITTGDFMSRFCSNL LP VQ AATHIARKAVELD+VPGRSPISVAAAAIYMASQAS+
Sbjct: 125 DLITTGDFMSRFCSNLCLPKQVQMAATHIARKAVELDLVPGRSPISVAAAAIYMASQASA 184
Query: 260 DKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKLFPQDFVFHTPIHELPQL 309
+KR+QKEIGDIAGVA+VTIRQSY+L+YP A LFP DF F TP+ +LPQL
Sbjct: 185 EKRTQKEIGDIAGVADVTIRQSYRLIYPRAPDLFPSDFKFDTPVDKLPQL 234
>gi|338224396|gb|AEI88079.1| transcription initiation factor IIB-like protein [Scylla
paramamosain]
Length = 219
Score = 387 bits (993), Expect = e-105, Method: Compositional matrix adjust.
Identities = 186/209 (88%), Positives = 197/209 (94%)
Query: 5 KVCCYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPE 64
+VCC +HP+A LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEK+ DPSRVGGPE
Sbjct: 11 EVCCPQHPEAHLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKANNDPSRVGGPE 70
Query: 65 NPLLNGSDLSTMIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADRINLT 124
NPLLNGSDLST+IGPG G ASFDGFG SKYQNRR+M+SSDRAL+NA REI++MAD+INL
Sbjct: 71 NPLLNGSDLSTIIGPGAGGASFDGFGNSKYQNRRSMSSSDRALINAFREISNMADKINLP 130
Query: 125 KTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEI 184
KTIVDRAN LFKQVHDGKNLKGRSNDAIASA LYIACRQEGVPRTFKEICAVSKISKKEI
Sbjct: 131 KTIVDRANLLFKQVHDGKNLKGRSNDAIASASLYIACRQEGVPRTFKEICAVSKISKKEI 190
Query: 185 GRCFKLILKALETSVDLITTGDFMSRFCS 213
GRCFKLILKALET VDLITTGDFMSRFCS
Sbjct: 191 GRCFKLILKALETQVDLITTGDFMSRFCS 219
>gi|308506715|ref|XP_003115540.1| hypothetical protein CRE_18811 [Caenorhabditis remanei]
gi|308256075|gb|EFP00028.1| hypothetical protein CRE_18811 [Caenorhabditis remanei]
Length = 306
Score = 386 bits (991), Expect = e-105, Method: Compositional matrix adjust.
Identities = 183/302 (60%), Positives = 239/302 (79%), Gaps = 2/302 (0%)
Query: 6 VCCYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPEN 65
V C HPD LIED+RAGD +C CGLVVGDR++DVG+EWR+FSNEKSG DPSRVG PE+
Sbjct: 5 VQCPHHPDVHLIEDHRAGDLVCPACGLVVGDRLVDVGTEWRSFSNEKSGNDPSRVGAPES 64
Query: 66 PLLNGSDLSTMIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADRINLTK 125
P L+G DLST I G G + D ++ Q R+TMN++DR + A+ I M++R++L +
Sbjct: 65 PYLSGGDLSTSIAVGFGGSDSDN-TLANAQ-RKTMNNTDRQMTTAMNLIREMSERVHLPR 122
Query: 126 TIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIG 185
I + A +FK+V D L+G++ +A A+ACLYIACRQ+GVPRTFKEICA+S++SKKEIG
Sbjct: 123 NIQESAFRMFKEVLDSGVLRGKNIEAQAAACLYIACRQDGVPRTFKEICAISRVSKKEIG 182
Query: 186 RCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPIS 245
RCFK+I++ T+++ +T+ DFMSRFC NL LPN +Q AAT IA++AV++D+V GRSPIS
Sbjct: 183 RCFKIIVRNSSTNLEHVTSADFMSRFCGNLYLPNSIQAAATRIAKRAVDMDLVAGRSPIS 242
Query: 246 VAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKLFPQDFVFHTPIHE 305
+AAAAIYMASQAS++KR+ KEIGDIAG AEVTIRQ+YKL+YP A++LFP+DF F T I
Sbjct: 243 IAAAAIYMASQASAEKRTAKEIGDIAGAAEVTIRQTYKLLYPKAAELFPEDFKFETAIEG 302
Query: 306 LP 307
LP
Sbjct: 303 LP 304
>gi|321470096|gb|EFX81073.1| hypothetical protein DAPPUDRAFT_299541 [Daphnia pulex]
Length = 321
Score = 373 bits (958), Expect = e-101, Method: Compositional matrix adjust.
Identities = 192/301 (63%), Positives = 229/301 (76%), Gaps = 9/301 (2%)
Query: 6 VCCYEHPDAPLIE--DYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGP 63
+CC HP PLI DYR+ DQIC ECGLVV DRV DVGSEWRTFS E VDPS++G
Sbjct: 11 ICCPSHPHYPLIAHYDYRSSDQICPECGLVVEDRVDDVGSEWRTFSYEAGNVDPSQIGEE 70
Query: 64 ENPLLNGSDLSTMIGPG-RGDASF---DGFGMSKYQNRRTMNSSDRALLNAIREINSMAD 119
EN LL+GS+L+TM GP G S G + + +NR+TM+SSD+ L++A EI++MA
Sbjct: 71 ENTLLDGSNLTTMFGPSMSGGGSLLNESGGAVGRKKNRQTMSSSDQTLVSAYNEISNMAV 130
Query: 120 RINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKI 179
INL +T+VDRAN LFK VHDGK+LKG S AIAS CLYIACRQEGVPRTFKEICA++KI
Sbjct: 131 NINLPRTVVDRANCLFKNVHDGKHLKGHSTKAIASTCLYIACRQEGVPRTFKEICALTKI 190
Query: 180 SKKEIGRCFKLILKALETSVDL---ITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELD 236
KKE+GRC+KLI KALETSVD+ ITT DF+ NL L MVQ+ A HI KAVELD
Sbjct: 191 DKKELGRCYKLIPKALETSVDVIPRITTSDFIPLQNLNLELNAMVQREALHIGLKAVELD 250
Query: 237 IVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKLFPQD 296
+VPGRSP+SVAAAAIYMAS AS K ++K IGDI GVA+VTIRQ ++LMYP A++LFP +
Sbjct: 251 VVPGRSPLSVAAAAIYMASLASEKKLTKKAIGDITGVADVTIRQLHELMYPRAAELFPPE 310
Query: 297 F 297
F
Sbjct: 311 F 311
>gi|6980707|pdb|1C9B|A Chain A, Crystal Structure Of A Human Tbp Core Domain-Human Tfiib
Core Domain Complex Bound To An Extended, Modified
Adenoviral Major Late Promoter (Admlp)
gi|6980709|pdb|1C9B|E Chain E, Crystal Structure Of A Human Tbp Core Domain-Human Tfiib
Core Domain Complex Bound To An Extended, Modified
Adenoviral Major Late Promoter (Admlp)
gi|6980711|pdb|1C9B|I Chain I, Crystal Structure Of A Human Tbp Core Domain-Human Tfiib
Core Domain Complex Bound To An Extended, Modified
Adenoviral Major Late Promoter (Admlp)
gi|6980713|pdb|1C9B|M Chain M, Crystal Structure Of A Human Tbp Core Domain-Human Tfiib
Core Domain Complex Bound To An Extended, Modified
Adenoviral Major Late Promoter (Admlp)
gi|6980715|pdb|1C9B|Q Chain Q, Crystal Structure Of A Human Tbp Core Domain-Human Tfiib
Core Domain Complex Bound To An Extended, Modified
Adenoviral Major Late Promoter (Admlp)
Length = 207
Score = 358 bits (918), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 171/207 (82%), Positives = 190/207 (91%)
Query: 103 SDRALLNAIREINSMADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACR 162
SDRA++NA +EI +MADRINL + IVDR NNLFKQV++ K+LKGR+NDAIASACLYIACR
Sbjct: 1 SDRAMMNAFKEITTMADRINLPRNIVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACR 60
Query: 163 QEGVPRTFKEICAVSKISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQ 222
QEGVPRTFKEICAVS+ISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNL LP VQ
Sbjct: 61 QEGVPRTFKEICAVSRISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLCLPKQVQ 120
Query: 223 KAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSY 282
AATHIARKAVELD+VPGRSPISVAAAAIYMASQAS++KR+QKEIGDIAGVA+VTIRQSY
Sbjct: 121 MAATHIARKAVELDLVPGRSPISVAAAAIYMASQASAEKRTQKEIGDIAGVADVTIRQSY 180
Query: 283 KLMYPHASKLFPQDFVFHTPIHELPQL 309
+L+YP A LFP DF F TP+ +LPQL
Sbjct: 181 RLIYPRAPDLFPTDFKFDTPVDKLPQL 207
>gi|157833927|pdb|1TFB|A Chain A, Nmr Studies Of Human General Transcription Factor Tfiib:
Dynamics And Interaction With Vp16 Activation Domain, 20
Structures
Length = 208
Score = 354 bits (909), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 169/207 (81%), Positives = 189/207 (91%)
Query: 103 SDRALLNAIREINSMADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACR 162
+ RA++NA +EI +MADRINL + IVDR NNLFKQV++ K+LKGR+NDAIASACLYIACR
Sbjct: 2 ASRAMMNAFKEITTMADRINLPRNIVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACR 61
Query: 163 QEGVPRTFKEICAVSKISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQ 222
QEGVPRTFKEICAVS+ISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNL LP VQ
Sbjct: 62 QEGVPRTFKEICAVSRISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLCLPKQVQ 121
Query: 223 KAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSY 282
AATHIARKAVELD+VPGRSPISVAAAAIYMASQAS++KR+QKEIGDIAGVA+VTIRQSY
Sbjct: 122 MAATHIARKAVELDLVPGRSPISVAAAAIYMASQASAEKRTQKEIGDIAGVADVTIRQSY 181
Query: 283 KLMYPHASKLFPQDFVFHTPIHELPQL 309
+L+YP A LFP DF F TP+ +LPQL
Sbjct: 182 RLIYPRAPDLFPTDFKFDTPVDKLPQL 208
>gi|146387163|pdb|2PHG|A Chain A, Model For Vp16 Binding To Tfiib
Length = 206
Score = 354 bits (909), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 169/205 (82%), Positives = 188/205 (91%)
Query: 105 RALLNAIREINSMADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQE 164
RA++NA +EI +MADRINL + IVDR NNLFKQV++ K+LKGR+NDAIASACLYIACRQE
Sbjct: 2 RAMMNAFKEITTMADRINLPRNIVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQE 61
Query: 165 GVPRTFKEICAVSKISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKA 224
GVPRTFKEICAVS+ISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNL LP VQ A
Sbjct: 62 GVPRTFKEICAVSRISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLCLPKQVQMA 121
Query: 225 ATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKL 284
ATHIARKAVELD+VPGRSPISVAAAAIYMASQAS++KR+QKEIGDIAGVA+VTIRQSY+L
Sbjct: 122 ATHIARKAVELDLVPGRSPISVAAAAIYMASQASAEKRTQKEIGDIAGVADVTIRQSYRL 181
Query: 285 MYPHASKLFPQDFVFHTPIHELPQL 309
+YP A LFP DF F TP+ +LPQL
Sbjct: 182 IYPRAPDLFPTDFKFDTPVDKLPQL 206
>gi|321470098|gb|EFX81075.1| hypothetical protein DAPPUDRAFT_50412 [Daphnia pulex]
Length = 324
Score = 351 bits (901), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 187/304 (61%), Positives = 230/304 (75%), Gaps = 12/304 (3%)
Query: 6 VCCYEHPDAPLIE--DYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGP 63
+CC HP P+I DYR+ DQIC+ECG+VV DRV DVGSEWRTFS E VDPS++G
Sbjct: 11 ICCPSHPLYPMIAHYDYRSSDQICTECGVVVKDRVDDVGSEWRTFSYEAGNVDPSQIGEE 70
Query: 64 ENPLLNGSDLSTMIGPG-RGDASF---DGFGMSKYQNRRTMNSSDRALLNAIREINSMAD 119
EN LL+GS+L+T+ GP G S G + + + R+TM+SSD+ L++A EI++MA
Sbjct: 71 ENTLLDGSNLTTIFGPSTSGGGSLINESGEALGRKKKRQTMSSSDQTLVSAYNEISNMAV 130
Query: 120 RINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKI 179
INL +T+VDRAN LFK VHDGK+LKG S AIAS CLYIACRQEGVPRTFKEICA++KI
Sbjct: 131 NINLPRTVVDRANCLFKNVHDGKHLKGHSTKAIASTCLYIACRQEGVPRTFKEICALTKI 190
Query: 180 SKKEIGRCFKLILKALETSVDL---ITTGDFMSRFCSNLSL---PNMVQKAATHIARKAV 233
KKE+GRC+KLI KALETSVD+ ITT DF+ RFCSNL + + + HI KAV
Sbjct: 191 DKKELGRCYKLIPKALETSVDVIPRITTSDFIPRFCSNLGMQLTKVIFLNVSLHIGLKAV 250
Query: 234 ELDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKLF 293
ELD+VPGRSP+SVAAAAIYMAS AS K ++K IGDI GVA+VTIRQ ++LMYP A++LF
Sbjct: 251 ELDVVPGRSPLSVAAAAIYMASLASEKKLTKKAIGDITGVADVTIRQLHELMYPRAAELF 310
Query: 294 PQDF 297
P +F
Sbjct: 311 PPEF 314
>gi|1943468|pdb|1VOL|A Chain A, Tfiib (Human Core Domain)TBP (A.THALIANA)TATA ELEMENT
Ternary Complex
Length = 204
Score = 347 bits (889), Expect = 6e-93, Method: Compositional matrix adjust.
Identities = 165/204 (80%), Positives = 185/204 (90%)
Query: 106 ALLNAIREINSMADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEG 165
A++NA +EI +MADRINL + VDR NNLF+Q ++ K+LKGR+NDAIASACLYIACRQEG
Sbjct: 1 AMMNAFKEITTMADRINLPRNKVDRTNNLFRQAYEQKSLKGRANDAIASACLYIACRQEG 60
Query: 166 VPRTFKEICAVSKISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAA 225
VPRTFKEICAVS+ISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNL LP VQ AA
Sbjct: 61 VPRTFKEICAVSRISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLCLPKQVQMAA 120
Query: 226 THIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLM 285
THIARKAVELD+VPGRSPISVAAAAIYMASQAS++KR+QKEIGDIAGVA+VTIRQSY+L+
Sbjct: 121 THIARKAVELDLVPGRSPISVAAAAIYMASQASAEKRTQKEIGDIAGVADVTIRQSYRLI 180
Query: 286 YPHASKLFPQDFVFHTPIHELPQL 309
YP A LFP DF F TP+ +LPQL
Sbjct: 181 YPRAPDLFPTDFKFDTPVDKLPQL 204
>gi|256082789|ref|XP_002577635.1| transcription initiation factor iib [Schistosoma mansoni]
gi|353230219|emb|CCD76390.1| putative transcription initiation factor iib [Schistosoma mansoni]
Length = 308
Score = 340 bits (873), Expect = 4e-91, Method: Compositional matrix adjust.
Identities = 179/302 (59%), Positives = 224/302 (74%), Gaps = 2/302 (0%)
Query: 8 CYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPL 67
C HP A LIED AGD +CS CGLVV DRVIDVGSEWRTFSN+ + D RVG EN L
Sbjct: 6 CKYHPYAVLIEDSHAGDMVCSMCGLVVADRVIDVGSEWRTFSNDANAKDMCRVGATENFL 65
Query: 68 LNGSDLSTMI-GPGRGDA-SFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADRINLTK 125
L+G DLSTMI GP D+ D G Y+NRR +++ DR LL+A REI+ M + +NL K
Sbjct: 66 LDGGDLSTMISGPSPSDSRQLDEHGKPMYRNRRNISAPDRVLLSAFREISQMGEHLNLPK 125
Query: 126 TIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIG 185
+I D AN LFKQVH+ KNL+GRSNDA+++ACLY+ACRQEGVPRTFKE+CAVS++SKKEIG
Sbjct: 126 SISDHANLLFKQVHETKNLRGRSNDAVSTACLYMACRQEGVPRTFKEVCAVSRVSKKEIG 185
Query: 186 RCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPIS 245
+ FK ILK LET+V +T DFMSRFC NL+L VQ+ A +AR+A+ L++V GRSP+S
Sbjct: 186 KVFKKILKILETNVQSVTVEDFMSRFCGNLNLNIAVQRVANVVARRALNLNLVAGRSPVS 245
Query: 246 VAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKLFPQDFVFHTPIHE 305
VAAAAIYMA+ A ++ ++EIGD+AG AE TI +Y+ M+ AS+LFP+D E
Sbjct: 246 VAAAAIYMAAYALGYRKEKREIGDVAGCAEATITCTYRAMHSRASELFPEDVRLAIRPDE 305
Query: 306 LP 307
LP
Sbjct: 306 LP 307
>gi|118780388|ref|XP_310127.3| AGAP009559-PA [Anopheles gambiae str. PEST]
gi|116131050|gb|EAA05855.3| AGAP009559-PA [Anopheles gambiae str. PEST]
Length = 315
Score = 338 bits (866), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 173/304 (56%), Positives = 215/304 (70%), Gaps = 8/304 (2%)
Query: 4 NKVCCYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGP 63
N++ C HP A L++DY GD ICS+CGL+VGDR+ID SEWRTFS++ S DPSRVG
Sbjct: 14 NQLVCPYHPAAALVDDYHTGDMICSDCGLIVGDRMIDPSSEWRTFSDDPSRPDPSRVGS- 72
Query: 64 ENPLLNGSDLSTMIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADRINL 123
+P+L +LST I P S +GF + + M+++ R L+ I +MA+RIN
Sbjct: 73 TDPVLQ--NLSTFIQP-----SANGFEPPNHFSFLKMDTTTRKLMFGFAMIATMAERINA 125
Query: 124 TKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKE 183
+IV A +FKQ + L RS +A++ ACLYIACRQEGVPRTFKE+CAV SKKE
Sbjct: 126 PASIVSHAKTIFKQALEPAALTHRSLEAVSVACLYIACRQEGVPRTFKEMCAVCSASKKE 185
Query: 184 IGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSP 243
IGRCFKLI K L TS+D IT+ DFM RFCS L LP+ VQKAATHIA+KA E D+VP RSP
Sbjct: 186 IGRCFKLITKVLATSLDHITSEDFMQRFCSKLFLPHEVQKAATHIAQKAFEADLVPDRSP 245
Query: 244 ISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKLFPQDFVFHTPI 303
ISVAAAAIYMASQ S+ S K + IAGVAE+TI+QSYKLM+PHA +LFP+ +F+ I
Sbjct: 246 ISVAAAAIYMASQVSATAMSLKAVAAIAGVAELTIKQSYKLMHPHAWELFPRTHLFYKHI 305
Query: 304 HELP 307
LP
Sbjct: 306 GMLP 309
>gi|281203102|gb|EFA77303.1| transcription initiation factor IIB [Polysphondylium pallidum
PN500]
Length = 344
Score = 330 bits (846), Expect = 5e-88, Method: Compositional matrix adjust.
Identities = 166/311 (53%), Positives = 226/311 (72%), Gaps = 9/311 (2%)
Query: 3 INKVCCY--EHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSN-EKSGVDPSR 59
+NKV C+ ++PD ++EDY GD IC ECG+V+GDR++D SEWRTFSN E +G DP+R
Sbjct: 35 VNKVFCHICQNPDPDIVEDYAKGDLICRECGVVLGDRIVDEHSEWRTFSNSESTGSDPNR 94
Query: 60 VGGPENPLLNGSDLSTMIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMAD 119
VGGP NPLL S LST+IG G S D +S+ QNR + + DR+LL +EI MAD
Sbjct: 95 VGGPTNPLLRDSGLSTVIGKG---TSKDSSALSRMQNRGALANGDRSLLAGFKEIARMAD 151
Query: 120 RINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSK- 178
+ L +T+ D AN LF+++ D K++KGRS D I +A LYIACR EG+ RTFKEICA+S
Sbjct: 152 HMGLPQTVQDTANELFREMDDKKSMKGRSADGILAASLYIACRIEGITRTFKEICALSNN 211
Query: 179 ISKKEIGRCFKLILKALETSVDL--ITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELD 236
+SKK++GRC+K++ +AL ++L I+T DFM+RFC+NL+LP V++AA H++R A+EL
Sbjct: 212 VSKKDLGRCYKMMKEALANRINLQAISTEDFMTRFCTNLNLPLDVKRAAEHVSRTAMELG 271
Query: 237 IVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKLFPQD 296
IV G++PISVAAA+IYM SQ S +KR+QK I DI+GV+EVTIR +YK +Y +L P +
Sbjct: 272 IVAGKNPISVAAASIYMVSQLSPEKRTQKMISDISGVSEVTIRNAYKDLYIKREQLLPPN 331
Query: 297 FVFHTPIHELP 307
F T + LP
Sbjct: 332 SPFLTNVANLP 342
>gi|340728624|ref|XP_003402619.1| PREDICTED: transcription initiation factor IIB-like, partial
[Bombus terrestris]
Length = 176
Score = 327 bits (839), Expect = 4e-87, Method: Compositional matrix adjust.
Identities = 154/167 (92%), Positives = 158/167 (94%)
Query: 4 NKVCCYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGP 63
NKVCCY HPDA LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEK+GVDPSRVGGP
Sbjct: 10 NKVCCYAHPDASLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKAGVDPSRVGGP 69
Query: 64 ENPLLNGSDLSTMIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADRINL 123
ENPLLNGSDLSTMIGPG G ASFD FG SKYQNRRTM+SSDRAL+NA REIN MADRINL
Sbjct: 70 ENPLLNGSDLSTMIGPGTGAASFDAFGASKYQNRRTMSSSDRALINAFREINGMADRINL 129
Query: 124 TKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTF 170
KTIVDRANNLFKQVHDGKNLKGR+NDAIASACLYIACRQEGVPRTF
Sbjct: 130 PKTIVDRANNLFKQVHDGKNLKGRANDAIASACLYIACRQEGVPRTF 176
>gi|341885208|gb|EGT41143.1| hypothetical protein CAEBREN_12544 [Caenorhabditis brenneri]
Length = 254
Score = 322 bits (825), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 153/252 (60%), Positives = 202/252 (80%), Gaps = 2/252 (0%)
Query: 6 VCCYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPEN 65
V C HPD LIED+RAGD +C CGLVVGDR++DVG+EWR+FSNE+SG DPSRVG PEN
Sbjct: 5 VQCPVHPDVHLIEDHRAGDLVCPACGLVVGDRLVDVGTEWRSFSNERSGNDPSRVGAPEN 64
Query: 66 PLLNGSDLSTMIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADRINLTK 125
PLL+G DLST I G G + D ++ Q R++MN++DR + A+ I M++RI+L +
Sbjct: 65 PLLSGGDLSTTIAVGFGGSDSDN-SLANAQ-RKSMNNTDRQMTAAMSLIREMSERIHLPR 122
Query: 126 TIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIG 185
I + A+ +FK V D + L+G++N+A A+ACLYIACR++GVPRTFKEICAVS++SKKEIG
Sbjct: 123 NIQENASRIFKDVLDSRALRGKNNEAQAAACLYIACRKDGVPRTFKEICAVSRVSKKEIG 182
Query: 186 RCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPIS 245
RCFK+I++ LET+++ IT+ DFMSRFC NL LPN +Q AAT IA++AV++D+V GR+PIS
Sbjct: 183 RCFKIIIRNLETNLEQITSADFMSRFCGNLYLPNSIQAAATRIAKRAVDMDLVAGRTPIS 242
Query: 246 VAAAAIYMASQA 257
+AAAAIYMASQA
Sbjct: 243 IAAAAIYMASQA 254
>gi|256082791|ref|XP_002577636.1| transcription initiation factor IIB (TFIIB) [Schistosoma mansoni]
gi|353230220|emb|CCD76391.1| putative transcription initiation factor IIB (TFIIB) [Schistosoma
mansoni]
Length = 286
Score = 320 bits (820), Expect = 5e-85, Method: Compositional matrix adjust.
Identities = 168/284 (59%), Positives = 213/284 (75%), Gaps = 2/284 (0%)
Query: 26 ICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLSTMI-GPGRGDA 84
+CS CGLVV DRVIDVGSEWRTFSN+ + D RVG EN LL+G DLSTMI GP D+
Sbjct: 2 VCSMCGLVVADRVIDVGSEWRTFSNDANAKDMCRVGATENFLLDGGDLSTMISGPSPSDS 61
Query: 85 -SFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADRINLTKTIVDRANNLFKQVHDGKN 143
D G Y+NRR +++ DR LL+A REI+ M + +NL K+I D AN LFKQVH+ KN
Sbjct: 62 RQLDEHGKPMYRNRRNISAPDRVLLSAFREISQMGEHLNLPKSISDHANLLFKQVHETKN 121
Query: 144 LKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGRCFKLILKALETSVDLIT 203
L+GRSNDA+++ACLY+ACRQEGVPRTFKE+CAVS++SKKEIG+ FK ILK LET+V +T
Sbjct: 122 LRGRSNDAVSTACLYMACRQEGVPRTFKEVCAVSRVSKKEIGKVFKKILKILETNVQSVT 181
Query: 204 TGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRS 263
DFMSRFC NL+L VQ+ A +AR+A+ L++V GRSP+SVAAAAIYMA+ A ++
Sbjct: 182 VEDFMSRFCGNLNLNIAVQRVANVVARRALNLNLVAGRSPVSVAAAAIYMAAYALGYRKE 241
Query: 264 QKEIGDIAGVAEVTIRQSYKLMYPHASKLFPQDFVFHTPIHELP 307
++EIGD+AG AE TI +Y+ M+ AS+LFP+D ELP
Sbjct: 242 KREIGDVAGCAEATITCTYRAMHSRASELFPEDVRLAIRPDELP 285
>gi|226482608|emb|CAX73903.1| Transcription factor IIB [Schistosoma japonicum]
Length = 286
Score = 319 bits (818), Expect = 9e-85, Method: Compositional matrix adjust.
Identities = 168/284 (59%), Positives = 213/284 (75%), Gaps = 2/284 (0%)
Query: 26 ICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLSTMI-GPGRGDA 84
+CS CGLVV DRVIDVGSEWRTFSN+ + D RVG EN LL+G DLSTMI GP D+
Sbjct: 2 VCSMCGLVVADRVIDVGSEWRTFSNDANAKDMCRVGAGENFLLDGGDLSTMISGPSPSDS 61
Query: 85 -SFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADRINLTKTIVDRANNLFKQVHDGKN 143
D G Y+NRR M++ DR LL+A REI+ M + +NL K+I D AN LFKQVH+ KN
Sbjct: 62 RQLDENGKPMYRNRRNMSAPDRVLLSAFREISQMGEHLNLPKSISDHANLLFKQVHETKN 121
Query: 144 LKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGRCFKLILKALETSVDLIT 203
L+GRSNDA+++ACLY+ACRQEGVPRTFKE+CAVS++SKKEIG+ FK ILK LET+V +T
Sbjct: 122 LRGRSNDAVSTACLYMACRQEGVPRTFKEVCAVSRVSKKEIGKVFKKILKILETNVQSVT 181
Query: 204 TGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRS 263
DFMSRFC NL+L VQ+ A +AR+A+ L++V GRSP+SVAAAAIYMA+ A ++
Sbjct: 182 VEDFMSRFCGNLNLNITVQRVANVVARRALNLNLVAGRSPVSVAAAAIYMAAYALGYRKE 241
Query: 264 QKEIGDIAGVAEVTIRQSYKLMYPHASKLFPQDFVFHTPIHELP 307
++EIGD+AG AE TI +Y+ M+ A++LFP+D ELP
Sbjct: 242 KREIGDVAGCAEATITCTYRAMHLRANELFPEDVKLAIRPEELP 285
>gi|358336173|dbj|GAA33522.2| transcription initiation factor TFIIB [Clonorchis sinensis]
Length = 284
Score = 318 bits (814), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 168/284 (59%), Positives = 215/284 (75%), Gaps = 4/284 (1%)
Query: 26 ICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLSTMI-GPGRGDA 84
+CS CGLVV DRVIDVGSEWRTFSN+ + D RVG ENPLL+GSDLSTMI GP D+
Sbjct: 2 VCSMCGLVVADRVIDVGSEWRTFSNDANAKDMCRVGSSENPLLSGSDLSTMISGPSFSDS 61
Query: 85 -SFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADRINLTKTIVDRANNLFKQVHDGKN 143
D G + Y++RR ++S+DR L A REI MA+ +NL K+I D AN LFKQV++ KN
Sbjct: 62 RQVDDQGKALYKSRRHLSSADRVLTGAFREIGQMAEHLNLPKSISDHANLLFKQVYETKN 121
Query: 144 LKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGRCFKLILKALETSVDLIT 203
L+GRSNDA+++ACLY+ACRQEGVPRTFKE+CAVS++SKKEIG+ FK ILK LET+V +T
Sbjct: 122 LRGRSNDAVSTACLYMACRQEGVPRTFKEVCAVSRVSKKEIGKVFKKILKILETNVQSVT 181
Query: 204 TGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRS 263
DFMSRFC NL+L VQ+ A +AR+A+ L++V GRSP+SVAAAAIYMA+ A ++
Sbjct: 182 VEDFMSRFCGNLNLNIAVQRVANVVARRALNLNLVAGRSPVSVAAAAIYMAACALGYQKE 241
Query: 264 QKEIGDIAGVAEVTIRQSYKLMYPHASKLFPQDFVFHTPIHELP 307
++EIG++AG AE TI +Y+ M+ AS+LFP+D I LP
Sbjct: 242 KREIGEVAGCAEATITCAYRAMHARASELFPED--VRLSIRPLP 283
>gi|421975925|gb|AFX72995.1| Transcription factor IIB [Spirometra erinaceieuropaei]
Length = 286
Score = 317 bits (813), Expect = 4e-84, Method: Compositional matrix adjust.
Identities = 163/273 (59%), Positives = 209/273 (76%), Gaps = 2/273 (0%)
Query: 26 ICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLSTMI-GPGRGDA 84
+CS CGLVV DR+IDVGSEWRTFSN+ + D SRVG ENPL G DLSTMI P R D
Sbjct: 2 VCSLCGLVVADRIIDVGSEWRTFSNDANAKDNSRVGAAENPLFEGKDLSTMISAPSRSDP 61
Query: 85 S-FDGFGMSKYQNRRTMNSSDRALLNAIREINSMADRINLTKTIVDRANNLFKQVHDGKN 143
D G Y+N+R+++ DRAL+ A REI+ MA+R+NL KTI DRAN LFKQV++ +N
Sbjct: 62 RHLDDQGRPLYRNKRSVSGPDRALITAFREISQMAERLNLPKTISDRANLLFKQVYETRN 121
Query: 144 LKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGRCFKLILKALETSVDLIT 203
L+GRSNDA+++ACLY+ACRQE VPRTFKE+CAVSK+SKKEIG+ FK IL LET+V ++
Sbjct: 122 LRGRSNDAVSTACLYMACRQEKVPRTFKEVCAVSKVSKKEIGKVFKKILNILETNVQAVS 181
Query: 204 TGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRS 263
DFMSRFC+NL L VQ+ A +AR+A+ L++V GRSP+SVAAAAIYMA+ A ++
Sbjct: 182 VDDFMSRFCANLHLNITVQQVANVVARRALNLNLVSGRSPVSVAAAAIYMAAYALGCRKE 241
Query: 264 QKEIGDIAGVAEVTIRQSYKLMYPHASKLFPQD 296
++EIG++AG AE TI +Y+ M+ AS+LFP D
Sbjct: 242 EREIGEVAGCAEATITCTYRAMHARASELFPDD 274
>gi|328865397|gb|EGG13783.1| transcription initiation factor IIB [Dictyostelium fasciculatum]
Length = 331
Score = 315 bits (808), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 162/312 (51%), Positives = 218/312 (69%), Gaps = 11/312 (3%)
Query: 3 INKVCC--YEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSN-EKSGVDPSR 59
+NKV C + PD ++EDY GD IC CG V+GDR++D SEWRTFSN E +G DP+R
Sbjct: 22 LNKVTCPVCKDPDPDVVEDYARGDLICRRCGCVIGDRIVDEHSEWRTFSNSESTGADPNR 81
Query: 60 VGGPENPLLNGSDLSTMIGPGRG-DASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMA 118
VGGP NPLL LST+IG G G DAS +S+ QNR + S DR+LL A +EI M+
Sbjct: 82 VGGPNNPLLREGGLSTVIGKGTGKDASV----LSRMQNRGALGSGDRSLLAAFKEIEKMS 137
Query: 119 DRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSK 178
D I L +T+ D A LF+Q+ D K +KG+S D + +A LY+ACR +G+ RTFKE+CA+S
Sbjct: 138 DHIGLPQTVQDTAKELFRQMDDRKPMKGKSADGMLAASLYMACRIDGIARTFKEVCALSN 197
Query: 179 -ISKKEIGRCFKLILKALET--SVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVEL 235
+SKKE+ +C+K + +AL S+ I+T DFM+RFCSNLSLPN V+KAA H++R A++L
Sbjct: 198 NVSKKELAKCYKQMREALGDVHSLHAISTDDFMTRFCSNLSLPNDVKKAADHVSRTAIDL 257
Query: 236 DIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKLFPQ 295
IV G++P+SV AAAIY+ SQ S+DKR+QK I D++GV+EVTIR YK +Y L P
Sbjct: 258 GIVAGKNPLSVTAAAIYLVSQLSADKRTQKAISDVSGVSEVTIRNVYKDLYSKRDSLLPP 317
Query: 296 DFVFHTPIHELP 307
+ F + +LP
Sbjct: 318 NSPFLQNVSDLP 329
>gi|66803286|ref|XP_635486.1| transcription initiation factor IIB [Dictyostelium discoideum AX4]
gi|74851622|sp|Q54FD6.1|TF2B_DICDI RecName: Full=Transcription initiation factor IIB; AltName:
Full=General transcription factor TFIIB
gi|60463804|gb|EAL61980.1| transcription initiation factor IIB [Dictyostelium discoideum AX4]
Length = 325
Score = 311 bits (798), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 154/305 (50%), Positives = 212/305 (69%), Gaps = 9/305 (2%)
Query: 6 VCCYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSN-EKSGVDPSRVGGPE 64
VC + PD +IEDY GD IC CG+VVGDR++D SEWRTFSN E +G DP+RVGGP
Sbjct: 25 VCRIQDPD--IIEDYAKGDLICRGCGVVVGDRIVDEHSEWRTFSNSESTGADPNRVGGPI 82
Query: 65 NPLLNGSDLSTMIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADRINLT 124
NPLL S LST +G G D+ +++ QN+ + + DR LL A +EI MAD +NL
Sbjct: 83 NPLLRDSALSTTVGKGSKDSG----TLTRLQNKSALGTGDRNLLAAFKEIGRMADHMNLP 138
Query: 125 KTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEI 184
+T+ DRAN LF+ + D K+ KGRS D + +A LYIACRQE + RTFKEI A++ + KKEI
Sbjct: 139 QTVQDRANELFRFMDDKKSTKGRSVDGMVAAALYIACRQEHLSRTFKEIAALTNVPKKEI 198
Query: 185 GRCFKLILKALETSVDL--ITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRS 242
RC+K++ + + ++L I++ DF SRFCS L LPN V+K A H+++ A+++ IV G+S
Sbjct: 199 SRCYKIMKETFASVLNLQTISSEDFTSRFCSTLKLPNDVKKGAEHVSKMAMDMGIVAGKS 258
Query: 243 PISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKLFPQDFVFHTP 302
PISV AA+IYM SQ S +KR+QK+I D++GV+EVTIR +YK +Y +L P D + +
Sbjct: 259 PISVTAASIYMVSQLSPEKRTQKQIADVSGVSEVTIRNAYKDLYAKRDQLIPSDSPYFSQ 318
Query: 303 IHELP 307
+ LP
Sbjct: 319 VQYLP 323
>gi|330793157|ref|XP_003284652.1| hypothetical protein DICPUDRAFT_53091 [Dictyostelium purpureum]
gi|325085451|gb|EGC38858.1| hypothetical protein DICPUDRAFT_53091 [Dictyostelium purpureum]
Length = 353
Score = 307 bits (786), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 157/309 (50%), Positives = 212/309 (68%), Gaps = 12/309 (3%)
Query: 5 KVCCYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSN-EKSGVDPSRVGGP 63
K+C PD +IEDY GD IC ECG+VVGDR++D SEWRTFSN E +G DP+RVGGP
Sbjct: 49 KICRVNDPD--IIEDYAKGDLICRECGVVVGDRIVDEHSEWRTFSNSESTGADPNRVGGP 106
Query: 64 ENPLLNGSDLSTMIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADRINL 123
NPLL S LST IG G D+S +++ QN+ + + DR LL A +EI MAD +NL
Sbjct: 107 INPLLRDSALSTTIGKGSRDSS----SLNRLQNKSALGTGDRNLLAAFKEIGRMADHMNL 162
Query: 124 TKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKE 183
+T+ DRAN LF+ + D K+ KGRS D + +A LYIACRQE + RTFKEI A++ + KKE
Sbjct: 163 PQTVQDRANELFRFMDDKKSTKGRSVDGMVAAALYIACRQEHLSRTFKEIAALTNVPKKE 222
Query: 184 IGRCFKLILKALETSVDL--ITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGR 241
I RC+K++ + + ++L I+T DF SRFCS L LP V+K + H+++ A+++ IV G+
Sbjct: 223 ISRCYKIMKETFSSVLNLQTISTEDFTSRFCSTLKLPIEVKKISEHVSKTAMDMGIVAGK 282
Query: 242 SPISVAAAAIYMASQA---SSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKLFPQDFV 298
SPISV AA+IYM SQ DKR+QK+I +I+GV++VTIR +YK +Y L PQD
Sbjct: 283 SPISVTAASIYMVSQLLPNPQDKRTQKQIAEISGVSDVTIRNAYKDLYAKREVLIPQDSP 342
Query: 299 FHTPIHELP 307
+ I+ LP
Sbjct: 343 YFQYINSLP 351
>gi|449680698|ref|XP_002156994.2| PREDICTED: transcription initiation factor IIB-like, partial [Hydra
magnipapillata]
Length = 220
Score = 304 bits (779), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 148/203 (72%), Positives = 171/203 (84%)
Query: 105 RALLNAIREINSMADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQE 164
+ + A + + R +T DR+N LFKQVHD K+LKGRSNDAIASACLYIACRQE
Sbjct: 16 KQVTEASSRVYTHEKREGFVRTQEDRSNQLFKQVHDQKSLKGRSNDAIASACLYIACRQE 75
Query: 165 GVPRTFKEICAVSKISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKA 224
GVPRTFKEICA+SKI KKEIGRCFKLILKALE SVD+IT+ DFMSRFCSNLSLP VQ+A
Sbjct: 76 GVPRTFKEICAISKIPKKEIGRCFKLILKALEASVDIITSEDFMSRFCSNLSLPASVQRA 135
Query: 225 ATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKL 284
AT+IAR+A+ELD+VPGRSP+SVAAAAIY+ASQAS DK+SQK+IGDIAGVA+VTIRQSY+
Sbjct: 136 ATYIARRAMELDLVPGRSPVSVAAAAIYLASQASLDKKSQKDIGDIAGVADVTIRQSYRS 195
Query: 285 MYPHASKLFPQDFVFHTPIHELP 307
+ A+ LFP DFVFHTPI LP
Sbjct: 196 LVVRAADLFPPDFVFHTPIDRLP 218
>gi|402594223|gb|EJW88149.1| transcription initiation factor IIB [Wuchereria bancrofti]
Length = 210
Score = 287 bits (734), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 134/208 (64%), Positives = 170/208 (81%)
Query: 100 MNSSDRALLNAIREINSMADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYI 159
MN+ DR + + I M+ RI+L K+I D A +FK V D K L+G++N+A A+ACLYI
Sbjct: 1 MNNMDRQMSQGLSVIREMSARIHLPKSIEDGAAKIFKDVLDSKALRGKNNEAQAAACLYI 60
Query: 160 ACRQEGVPRTFKEICAVSKISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPN 219
ACR+EGVPRTFKEICA S++SKKEIGRCFKLI+K+LETS++ IT+ DFMSRFC NL LP+
Sbjct: 61 ACRKEGVPRTFKEICAASRVSKKEIGRCFKLIIKSLETSLEQITSADFMSRFCGNLGLPH 120
Query: 220 MVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIR 279
+Q AAT IA+KAVELD+V GRSPIS+AAAAIYMASQASS+K++ KEIG+IAG AEVT++
Sbjct: 121 SIQAAATRIAKKAVELDLVAGRSPISIAAAAIYMASQASSNKKTAKEIGEIAGAAEVTVK 180
Query: 280 QSYKLMYPHASKLFPQDFVFHTPIHELP 307
Q+YKL+YP A +LFP+DF F T + LP
Sbjct: 181 QTYKLLYPRAGELFPEDFKFTTAVESLP 208
>gi|209735698|gb|ACI68718.1| Transcription initiation factor IIB [Salmo salar]
Length = 224
Score = 285 bits (728), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 135/191 (70%), Positives = 158/191 (82%)
Query: 1 MNINKVCCYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRV 60
+ + KV C HPDA L+EDYRAGD IC ECGLVVGDRVIDVGSEWRTF+NEK+ DPSRV
Sbjct: 10 LALPKVQCPNHPDAMLVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFTNEKATQDPSRV 69
Query: 61 GGPENPLLNGSDLSTMIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADR 120
G +NPLLNG DLSTMI G G ASFD FG SKYQNRRTM+SSDRA+LNA +EI +MADR
Sbjct: 70 GDAQNPLLNGGDLSTMISKGTGAASFDEFGNSKYQNRRTMSSSDRAMLNAFKEITTMADR 129
Query: 121 INLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKIS 180
INL + I+DR NNLFKQV++ K+LKGR+NDAIASACLYIACRQEGVPRTFKEI ++ ++
Sbjct: 130 INLPRNIIDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFKEIGDIAGVA 189
Query: 181 KKEIGRCFKLI 191
I + ++LI
Sbjct: 190 DVTIRQSYRLI 200
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 43/102 (42%), Positives = 68/102 (66%)
Query: 208 MSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEI 267
++ ++LP + ++ ++ E + GR+ ++A+A +Y+A + R+ KEI
Sbjct: 123 ITTMADRINLPRNIIDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFKEI 182
Query: 268 GDIAGVAEVTIRQSYKLMYPHASKLFPQDFVFHTPIHELPQL 309
GDIAGVA+VTIRQSY+L+YP A+ LFP DF F+TP+ +LPQL
Sbjct: 183 GDIAGVADVTIRQSYRLIYPRAADLFPPDFKFYTPVDKLPQL 224
>gi|168039347|ref|XP_001772159.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162676490|gb|EDQ62972.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 312
Score = 277 bits (708), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 157/315 (49%), Positives = 206/315 (65%), Gaps = 15/315 (4%)
Query: 3 INKVCCYEHPDAP-LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVG 61
+NK C E A ++ D+ AGD +C+ECGLV+ +D SEWRTFS+ S DP RVG
Sbjct: 1 MNKTVCPECRKATEVVVDHAAGDMVCAECGLVLEQHSVDESSEWRTFSDSTSS-DPVRVG 59
Query: 62 GPENPLLNGSDLSTMIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADRI 121
GP NPLL LST+I G + ++QNR + + DR+L+ A R I +MADR+
Sbjct: 60 GPSNPLLTDGGLSTIISKPNGAQGDFMSSLGRWQNRGS--NPDRSLIIAFRSIGTMADRL 117
Query: 122 NLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFK-EICAVSK-I 179
L TI DRAN ++K+V D K+++GRS DAI +ACLYIACRQE PRTFK EIC+V+
Sbjct: 118 GLVSTIKDRANEIYKKVEDLKSIRGRSQDAILAACLYIACRQEDKPRTFKAEICSVANGA 177
Query: 180 SKKEIGRCFKLILKALETSVDL------ITTGDFMSRFCSNLSLPNMVQKAATHIARKAV 233
SKK+IGR K I+K LE + + I GDF+ RFCS+L++ N +AAT +K+
Sbjct: 178 SKKDIGRATKFIVKQLEEDMGISMEMGTIHAGDFLRRFCSHLNMENNEVRAATETVKKSE 237
Query: 234 ELDIVPGRSPISVAAAAIYMASQASS-DKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKL 292
LDI +SPISVAAAAIYM SQ + DK++ K+I +AGVAEVTIR SYK +YPHA+KL
Sbjct: 238 MLDI--RKSPISVAAAAIYMISQLNEKDKKALKDISRVAGVAEVTIRNSYKDLYPHAAKL 295
Query: 293 FPQDFVFHTPIHELP 307
P F+ + LP
Sbjct: 296 IPDWFLKEVDLKNLP 310
>gi|324511266|gb|ADY44696.1| Transcription initiation factor IIB [Ascaris suum]
Length = 211
Score = 276 bits (705), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 130/209 (62%), Positives = 172/209 (82%), Gaps = 1/209 (0%)
Query: 100 MNSSDRALLNAIREINSMADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYI 159
MN++DR + A+ I M+ RI+L+K+I D A +F+ V D K LKG++N+A A+ACLYI
Sbjct: 1 MNNTDRQMSQAMSVIREMSARIHLSKSIEDNAAKVFRDVLDSKALKGKNNEAQAAACLYI 60
Query: 160 ACRQEGVPRTFKEICAVSKISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPN 219
ACR+EGVPRTFKEICA S++SKKEIGRCFKLI+K+LET+++ IT+ DFMSRFC NL L +
Sbjct: 61 ACRKEGVPRTFKEICAASRVSKKEIGRCFKLIIKSLETNLEQITSADFMSRFCGNLGLSH 120
Query: 220 MVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIR 279
+Q AAT IA+KAVELD+V GRSPIS+AAAAIYMASQAS++K++ KEIG+IAG AEVT++
Sbjct: 121 SIQAAATRIAKKAVELDLVAGRSPISIAAAAIYMASQASNEKKTAKEIGEIAGAAEVTVK 180
Query: 280 QSYKLMYPHASKLFPQDFVF-HTPIHELP 307
Q+Y+L++P A +LFP+DF F + I LP
Sbjct: 181 QTYRLLHPRAKELFPEDFKFANGGIESLP 209
>gi|15227397|ref|NP_181694.1| transcription initiation factor IIB-1 [Arabidopsis thaliana]
gi|1351221|sp|P48512.1|TF2B1_ARATH RecName: Full=Transcription initiation factor IIB-1; AltName:
Full=General transcription factor TFIIB-1;
Short=AtTFIIB1
gi|945085|gb|AAB09755.1| transcription factor TFIIB [Arabidopsis thaliana]
gi|2618697|gb|AAB84344.1| transcription factor IIB (TFIIB) [Arabidopsis thaliana]
gi|20260322|gb|AAM13059.1| transcription factor IIB [Arabidopsis thaliana]
gi|21554842|gb|AAM63705.1| transcription factor IIB (TFIIB) [Arabidopsis thaliana]
gi|22136182|gb|AAM91169.1| transcription factor IIB [Arabidopsis thaliana]
gi|39545878|gb|AAR28002.1| TFIIB1 [Arabidopsis thaliana]
gi|330254915|gb|AEC10009.1| transcription initiation factor IIB-1 [Arabidopsis thaliana]
Length = 312
Score = 272 bits (695), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 147/302 (48%), Positives = 193/302 (63%), Gaps = 12/302 (3%)
Query: 13 DAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSD 72
+ L+ D+ AGD +CSECGLV+ ID SEWRTF+NE S DP+RVGGP NPLL S
Sbjct: 12 ETELVVDHSAGDTLCSECGLVLESHSIDETSEWRTFANESSNSDPNRVGGPTNPLLADSA 71
Query: 73 LSTMIG-PGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADRINLTKTIVDRA 131
L+T+I P F + ++QNR + +SDR L+ A + I +M++R+ L TI DRA
Sbjct: 72 LTTVIAKPNGSSGDFLSSSLGRWQNRNS--NSDRGLIQAFKTIATMSERLGLVATIKDRA 129
Query: 132 NNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSK-ISKKEIGRCFKL 190
N L+K++ D K+ +GR+ DA+ +ACLYIACRQE PRT KEIC ++ +KKEIGR
Sbjct: 130 NELYKRLEDQKSSRGRNQDALYAACLYIACRQEDKPRTIKEICVIANGATKKEIGRAKDY 189
Query: 191 ILKAL----ETSVDL--ITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPI 244
I+K L SVDL I GDFM RFCSNL++ N KAA +K+ E DI RSPI
Sbjct: 190 IVKTLGLEPGQSVDLGTIHAGDFMRRFCSNLAMSNHAVKAAQEAVQKSEEFDI--RRSPI 247
Query: 245 SVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKLFPQDFVFHTPIH 304
S+AA IY+ +Q S DK++ K+I GVAE TIR SYK +YPH SK+ P + +
Sbjct: 248 SIAAVVIYIITQLSDDKKTLKDISHATGVAEGTIRNSYKDLYPHLSKIAPSWYAKEEDLK 307
Query: 305 EL 306
L
Sbjct: 308 NL 309
>gi|302766794|ref|XP_002966817.1| hypothetical protein SELMODRAFT_87129 [Selaginella moellendorffii]
gi|300164808|gb|EFJ31416.1| hypothetical protein SELMODRAFT_87129 [Selaginella moellendorffii]
Length = 310
Score = 271 bits (693), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 149/299 (49%), Positives = 192/299 (64%), Gaps = 12/299 (4%)
Query: 6 VCCYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPEN 65
VC + ++ D+ AGD +C ECGLV+ ID SEWRTFS++ DP RVGGP N
Sbjct: 5 VCPDCRREVDIVVDHAAGDTVCMECGLVLEAHFIDESSEWRTFSDDSGSNDPVRVGGPSN 64
Query: 66 PLLNGSDLSTMIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADRINLTK 125
PLL LST I G G + D + K+QN T + DRALL A + I +MADR+ L
Sbjct: 65 PLLTDGGLSTTISRGNG-SQGDYAALGKWQNHGT--NPDRALLLAFKTIGTMADRLGLVS 121
Query: 126 TIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSK-ISKKEI 184
TI DRA+ ++K+V D K+++GRS DAI +ACLYIACRQE PRTFKEI +V+ +KKEI
Sbjct: 122 TIKDRADEIYKKVEDMKSIRGRSQDAILAACLYIACRQEDKPRTFKEIHSVANGATKKEI 181
Query: 185 GRCFKLILKALE------TSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIV 238
GR I+K LE S+ I GDF+ RFCS+L + N +AAT +K ELDI
Sbjct: 182 GRATNFIVKRLEEEMGKSMSMGSIHAGDFLRRFCSHLGMTNQAVRAATDTVKKVEELDI- 240
Query: 239 PGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKLFPQDF 297
+SPIS+AAAAIYM SQ S DK+ KEI +AGVAE TI+ S+ + PHA++L P +
Sbjct: 241 -RKSPISIAAAAIYMISQVSEDKKPLKEISRVAGVAEATIKNSFNYLRPHATRLVPDWY 298
>gi|115480363|ref|NP_001063775.1| Os09g0534800 [Oryza sativa Japonica Group]
gi|21362998|sp|Q8W0W3.1|TF2B_ORYSJ RecName: Full=Transcription initiation factor IIB; AltName:
Full=General transcription factor TFIIB
gi|18481632|gb|AAL73491.1|AF464908_1 general transcription factor TFIIB [Oryza sativa]
gi|50725809|dbj|BAD33339.1| Transcription initiation factor IIB [Oryza sativa Japonica Group]
gi|50726577|dbj|BAD34211.1| Transcription initiation factor IIB [Oryza sativa Japonica Group]
gi|113632008|dbj|BAF25689.1| Os09g0534800 [Oryza sativa Japonica Group]
gi|125564497|gb|EAZ09877.1| hypothetical protein OsI_32170 [Oryza sativa Indica Group]
gi|125606444|gb|EAZ45480.1| hypothetical protein OsJ_30135 [Oryza sativa Japonica Group]
gi|347737122|gb|AEP20532.1| transcription factor [Oryza sativa Japonica Group]
Length = 312
Score = 270 bits (690), Expect = 6e-70, Method: Compositional matrix adjust.
Identities = 147/307 (47%), Positives = 193/307 (62%), Gaps = 14/307 (4%)
Query: 8 CYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPL 67
C +H + D+ AGD +C+ECGLV+ +D SEWRTF+NE S DP RVGGP NPL
Sbjct: 9 CKKHTEVAF--DHSAGDTVCTECGLVLEAHSVDETSEWRTFANESSDNDPVRVGGPTNPL 66
Query: 68 LNGSDLSTMIG-PGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADRINLTKT 126
L LST+I P F + ++QNR + + DR+L+ A R I +MADR+ L T
Sbjct: 67 LTDGGLSTVIAKPNGAQGEFLSSSLGRWQNRGS--NPDRSLILAFRTIANMADRLGLVAT 124
Query: 127 IVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSK-ISKKEIG 185
I DRAN ++K+V D K+++GR+ DAI +ACLYIACRQE PRT KEIC+V+ +KKEIG
Sbjct: 125 IKDRANEIYKKVEDLKSIRGRNQDAILAACLYIACRQEDRPRTVKEICSVANGATKKEIG 184
Query: 186 RCFKLILKALET------SVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVP 239
R + I+K LE + I GDF+ RFCS L + N KAA +++ ELDI
Sbjct: 185 RAKEFIVKQLEVEMGQSMEMGTIHAGDFLRRFCSTLGMNNQAVKAAQEAVQRSEELDI-- 242
Query: 240 GRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKLFPQDFVF 299
RSPIS+AAA IYM +Q S DK+ K+I GVAE TIR SYK +YP+AS+L P +
Sbjct: 243 RRSPISIAAAVIYMITQLSDDKKPLKDISLATGVAEGTIRNSYKDLYPYASRLIPNTYAK 302
Query: 300 HTPIHEL 306
+ L
Sbjct: 303 EEDLKNL 309
>gi|148907440|gb|ABR16853.1| unknown [Picea sitchensis]
Length = 313
Score = 270 bits (690), Expect = 6e-70, Method: Compositional matrix adjust.
Identities = 150/316 (47%), Positives = 198/316 (62%), Gaps = 19/316 (6%)
Query: 3 INKVCCYEHPD----APLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPS 58
I+ V C PD ++ D+ AGD +C ECGLV+ ID SEWRTF+NE DP
Sbjct: 2 IDTVSC---PDCKKQTEVVFDHSAGDTVCVECGLVLEAHSIDETSEWRTFANETGDNDPV 58
Query: 59 RVGGPENPLLNGSDLSTMIG-PGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSM 117
RVGGP NPLL LST+I P F + ++QNR + + DR+L+ A + I +M
Sbjct: 59 RVGGPSNPLLTDGGLSTVISKPNGASGDFLSSSLGRWQNRGS--NPDRSLIMAFKTIGTM 116
Query: 118 ADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVS 177
+DR+ L TI DRAN ++K+V D K+++GR+ DAI +ACLYIACRQE PRT KEIC+V+
Sbjct: 117 SDRLGLVATIKDRANEIYKKVEDSKSIRGRNQDAILAACLYIACRQEDKPRTVKEICSVA 176
Query: 178 K-ISKKEIGRCFKLILKALE------TSVDLITTGDFMSRFCSNLSLPNMVQKAATHIAR 230
SKKE+GR + I+K LE + I GDF+ RFCS+L + + KAAT +
Sbjct: 177 NGASKKEVGRAKEFIVKQLEEEMGKSMEMGTIHAGDFLRRFCSHLGMGHQAVKAATEAVK 236
Query: 231 KAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHAS 290
K+ ELDI RSPIS+AAAAIYM SQ S +K+ ++I GVAE TIR SYK +YPHA+
Sbjct: 237 KSEELDIR--RSPISIAAAAIYMISQLSEEKKLLRDISRATGVAEGTIRNSYKDLYPHAA 294
Query: 291 KLFPQDFVFHTPIHEL 306
+L P F + L
Sbjct: 295 RLIPDWFAKEEDLKNL 310
>gi|357159642|ref|XP_003578512.1| PREDICTED: transcription initiation factor IIB-like [Brachypodium
distachyon]
Length = 312
Score = 268 bits (686), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 146/307 (47%), Positives = 193/307 (62%), Gaps = 14/307 (4%)
Query: 8 CYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPL 67
C +H + D+ AGD +C+ECGLV+ +D SEWRTF+NE + DP RVGGP NPL
Sbjct: 9 CKKHTEVAF--DHSAGDTVCTECGLVLEAHSVDETSEWRTFANESNDNDPVRVGGPSNPL 66
Query: 68 LNGSDLSTMIG-PGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADRINLTKT 126
L LST+I P F + ++QNR + + DR+L+ A R I +MADR+ L T
Sbjct: 67 LTDGGLSTVIAKPNGAHGEFLSSSLGRWQNRGS--NPDRSLILAFRTIANMADRLGLVAT 124
Query: 127 IVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSK-ISKKEIG 185
I DRAN ++K+V D K+++GR+ DAI +ACLYIACRQE PRT KEIC+V+ +KKEIG
Sbjct: 125 IKDRANEIYKKVEDLKSIRGRNQDAILAACLYIACRQEDRPRTVKEICSVANGATKKEIG 184
Query: 186 RCFKLILKALET------SVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVP 239
R + I+K LE + I GDF+ RFCS L + N KAA +++ ELDI
Sbjct: 185 RAKEFIVKQLEVEMGQSMEMGTIHAGDFLRRFCSTLGMNNTAVKAAQEAVQRSEELDI-- 242
Query: 240 GRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKLFPQDFVF 299
RSPIS+AAA IYM +Q S DK+ K+I GVAE TIR SYK +YP+AS+L P +
Sbjct: 243 RRSPISIAAAVIYMITQLSEDKKPLKDISLATGVAEGTIRNSYKDLYPYASRLIPNTYAK 302
Query: 300 HTPIHEL 306
+ L
Sbjct: 303 EEDLKNL 309
>gi|297827809|ref|XP_002881787.1| hypothetical protein ARALYDRAFT_903484 [Arabidopsis lyrata subsp.
lyrata]
gi|297327626|gb|EFH58046.1| hypothetical protein ARALYDRAFT_903484 [Arabidopsis lyrata subsp.
lyrata]
Length = 312
Score = 268 bits (685), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 144/302 (47%), Positives = 191/302 (63%), Gaps = 12/302 (3%)
Query: 13 DAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSD 72
+ L+ D+ AGD +CSECGLV+ ID SEWRTF+NE S DP+RVGGP NPLL S
Sbjct: 12 ETELVVDHSAGDTLCSECGLVLESHSIDETSEWRTFANESSNSDPNRVGGPTNPLLADSA 71
Query: 73 LSTMIG-PGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADRINLTKTIVDRA 131
L+T+I P F + ++QNR + +SDR L+ A + I +M++R+ L TI DRA
Sbjct: 72 LTTVIAKPNGSSGDFLSSSLGRWQNRNS--NSDRGLIQAFKTIATMSERLGLVATIKDRA 129
Query: 132 NNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSK-ISKKEIGRCFKL 190
N ++K++ D K +GR+ DA+ +ACLYIACRQE PRT KEIC ++ +KKEIGR
Sbjct: 130 NEIYKRLEDQKTTRGRNQDALYAACLYIACRQEDKPRTIKEICVIANGATKKEIGRAKDY 189
Query: 191 ILKAL----ETSVDL--ITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPI 244
I+K L SV+L I GDFM RFCSNL + N KAA +K+ E DI RSPI
Sbjct: 190 IVKTLGLDPGQSVELGTIHAGDFMRRFCSNLGMSNHAVKAAQEAVQKSEEFDI--RRSPI 247
Query: 245 SVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKLFPQDFVFHTPIH 304
S+AA IY+ +Q S DK++ K+I GVAE TIR SYK +YPH +K+ P + +
Sbjct: 248 SIAAVVIYIITQLSDDKKTLKDISTATGVAEGTIRNSYKDLYPHLAKIAPSWYAKEEDLK 307
Query: 305 EL 306
L
Sbjct: 308 NL 309
>gi|226503255|ref|NP_001149721.1| transcription initiation factor IIB [Zea mays]
gi|195629762|gb|ACG36522.1| transcription initiation factor IIB [Zea mays]
gi|414590059|tpg|DAA40630.1| TPA: transcription initiation factor IIB [Zea mays]
Length = 312
Score = 268 bits (685), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 145/307 (47%), Positives = 192/307 (62%), Gaps = 14/307 (4%)
Query: 8 CYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPL 67
C +H + D+ AGD +C+ECGLV+ +D SEWRTF+NE + DP RVGGP NPL
Sbjct: 9 CKKHTEVAF--DHSAGDTVCTECGLVLEAHSVDETSEWRTFANESNDNDPVRVGGPSNPL 66
Query: 68 LNGSDLSTMIG-PGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADRINLTKT 126
L LST+I P F + ++QNR + + DR+L+ A R I +MADR+ L T
Sbjct: 67 LTDGGLSTVIAKPNGAQGDFLSSSLGRWQNRGS--NPDRSLILAFRTIANMADRLGLVAT 124
Query: 127 IVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSK-ISKKEIG 185
I DRAN +FK++ D K+++GR+ DAI +ACLYIACRQE PRT KEIC+V+ +KKEIG
Sbjct: 125 IKDRANEIFKKIEDLKSIRGRNQDAILAACLYIACRQEDRPRTVKEICSVANGATKKEIG 184
Query: 186 RCFKLILKALET------SVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVP 239
R + I+K LE + I GDF+ RFCS L + N AA +++ ELDI
Sbjct: 185 RAKEFIVKQLEVEMGQSMEMGTIHAGDFLRRFCSTLGMTNQAVNAAKEAVQRSEELDI-- 242
Query: 240 GRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKLFPQDFVF 299
RSPIS+AAA IYM +Q S DK+ K+I GVAE TIR SYK +YP+AS+L P +
Sbjct: 243 RRSPISIAAAVIYMITQLSEDKKPLKDISLATGVAEGTIRNSYKDLYPYASRLIPNTYAK 302
Query: 300 HTPIHEL 306
+ L
Sbjct: 303 EEDLKNL 309
>gi|326531378|dbj|BAK05040.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 312
Score = 267 bits (683), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 145/307 (47%), Positives = 193/307 (62%), Gaps = 14/307 (4%)
Query: 8 CYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPL 67
C +H + D+ AGD +C+ECGLV+ +D SEWRTF+NE + DP RVGGP NPL
Sbjct: 9 CKKHTEVAF--DHSAGDTVCTECGLVLEAHSVDETSEWRTFANESNDNDPVRVGGPSNPL 66
Query: 68 LNGSDLSTMIG-PGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADRINLTKT 126
L LST+I P F + ++QNR + + DR+L+ A R I +MADR+ L T
Sbjct: 67 LTDGGLSTVIAKPNGAHGDFLSSSLGRWQNRGS--NPDRSLILAFRTIANMADRLGLVAT 124
Query: 127 IVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSK-ISKKEIG 185
I DRAN ++K+V D K+++GR+ DAI +ACLYIACRQE PRT KEIC+V+ +KKEIG
Sbjct: 125 IKDRANEIYKKVEDLKSIRGRNQDAILAACLYIACRQEDRPRTVKEICSVANGATKKEIG 184
Query: 186 RCFKLILKALET------SVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVP 239
R + I+K LE + I GDF+ RFCS L + N KAA +++ ELDI
Sbjct: 185 RAKEFIVKQLEVEMGQSMEMGTIHAGDFLRRFCSTLGMNNTAVKAAQEAVQRSEELDI-- 242
Query: 240 GRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKLFPQDFVF 299
RSPIS+AAA IYM +Q S DK+ K+I GVAE TIR SYK +YP+A++L P +
Sbjct: 243 RRSPISIAAAVIYMITQLSEDKKPLKDISLATGVAEGTIRNSYKDLYPYAARLIPNSYAK 302
Query: 300 HTPIHEL 306
+ L
Sbjct: 303 EEDLKNL 309
>gi|351724605|ref|NP_001238343.1| transcription initiation factor IIB [Glycine max]
gi|1351222|sp|P48513.1|TF2B_SOYBN RecName: Full=Transcription initiation factor IIB; AltName:
Full=General transcription factor TFIIB
gi|945087|gb|AAB09756.1| transcription factor TFIIB [Glycine max]
Length = 313
Score = 267 bits (682), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 145/300 (48%), Positives = 189/300 (63%), Gaps = 13/300 (4%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLST 75
++ D+ AGD +CSECGLV+ ID SEWRTF+NE DP+RVGGP NPLL LST
Sbjct: 15 VVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPNRVGGPSNPLLTDGGLST 74
Query: 76 MIGP--GRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADRINLTKTIVDRANN 133
+I G G F + ++QNR + + DRAL+ A + I +M+DR+ L TI DRAN
Sbjct: 75 VIAKPNGGGGGEFLSSSLGRWQNRGS--NPDRALIQAFKTIATMSDRLGLVATIKDRANE 132
Query: 134 LFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSK-ISKKEIGRCFKLIL 192
++K+V D K+ +GR+ DA+ +ACLYIACRQE PRT KEIC+V+ +KKEIGR + I+
Sbjct: 133 IYKRVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYIV 192
Query: 193 KAL------ETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISV 246
K L + I GDFM RFCSNL + N KAA +K+ E DI RSPIS+
Sbjct: 193 KQLGLENGNAVEMGTIHAGDFMRRFCSNLCMNNQAVKAAQEAVQKSEEFDIR--RSPISI 250
Query: 247 AAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKLFPQDFVFHTPIHEL 306
AAA IY+ +Q S DK+ K+I GVAE TIR SYK +YPH SK+ P + + L
Sbjct: 251 AAAVIYIITQLSDDKKPLKDISLATGVAEGTIRNSYKDLYPHVSKIIPNWYAKEEDLKNL 310
>gi|317106705|dbj|BAJ53205.1| JHL06B08.6 [Jatropha curcas]
Length = 312
Score = 266 bits (681), Expect = 6e-69, Method: Compositional matrix adjust.
Identities = 148/299 (49%), Positives = 191/299 (63%), Gaps = 12/299 (4%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLST 75
++ D+ AGD +CSECGLV+ ID SEWRTF+NE DP RVGGP NPLL LST
Sbjct: 15 VVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLST 74
Query: 76 MIG-PGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADRINLTKTIVDRANNL 134
+I P F + ++QNR + + DR L+ A + I +M+DR+ L TI DRAN +
Sbjct: 75 VIAKPNGASGEFLSSSLGRWQNRGS--NPDRGLILAFKTIATMSDRLGLVATIKDRANEI 132
Query: 135 FKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSK-ISKKEIGRCFKLILK 193
+K+V D K+ +GR+ DA+ +ACLYIACRQE PRT KEIC+V+ +KKEIGR + I+K
Sbjct: 133 YKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYIVK 192
Query: 194 --ALET--SVDL--ITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVA 247
LET SV++ I GDFM RFCSNL + N KAA +K+ E DI RSPIS+A
Sbjct: 193 QLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAMKAAQEAVQKSEEFDIR--RSPISIA 250
Query: 248 AAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKLFPQDFVFHTPIHEL 306
AA IY+ SQ S DK+ +EI GVAE TIR SYK +YPH SK+ P + + L
Sbjct: 251 AAVIYIISQLSDDKKPLREISQATGVAEGTIRNSYKDLYPHVSKIIPGWYAKEEDLKNL 309
>gi|242045402|ref|XP_002460572.1| hypothetical protein SORBIDRAFT_02g031020 [Sorghum bicolor]
gi|241923949|gb|EER97093.1| hypothetical protein SORBIDRAFT_02g031020 [Sorghum bicolor]
Length = 312
Score = 266 bits (681), Expect = 7e-69, Method: Compositional matrix adjust.
Identities = 143/296 (48%), Positives = 189/296 (63%), Gaps = 12/296 (4%)
Query: 19 DYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLSTMIG 78
D+ AGD +C+ECGLV+ +D SEWRTF+NE + DP RVGGP NPLL LST+I
Sbjct: 18 DHSAGDTVCTECGLVLEAHSVDETSEWRTFANESNDNDPVRVGGPTNPLLTDGGLSTVIA 77
Query: 79 -PGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADRINLTKTIVDRANNLFKQ 137
P F + ++QNR + + DR+L+ A R I +MADR+ L TI DRAN ++K+
Sbjct: 78 KPNGAQGEFLSSSLGRWQNRGS--NPDRSLILAFRTIANMADRLGLVATIKDRANEIYKK 135
Query: 138 VHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSK-ISKKEIGRCFKLILKALE 196
V D K+++GR+ DAI +ACLYIACRQE PRT KEIC+V+ +KKEIGR + I+K LE
Sbjct: 136 VEDLKSIRGRNQDAILAACLYIACRQEDRPRTVKEICSVANGATKKEIGRAKEFIVKQLE 195
Query: 197 T------SVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAA 250
+ I GDF+ RFCS L + N KAA +++ ELDI RSPIS+AAA
Sbjct: 196 VEMGQSMEMGTIHAGDFLRRFCSTLGMNNQAVKAAQEAVQRSEELDI--RRSPISIAAAV 253
Query: 251 IYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKLFPQDFVFHTPIHEL 306
IYM +Q S DK+ K+I GVAE TIR SYK +YP+A++L P + + L
Sbjct: 254 IYMITQLSEDKKPLKDISLATGVAEGTIRNSYKDLYPYAARLIPNTYAKEEDLKNL 309
>gi|430811796|emb|CCJ30774.1| unnamed protein product [Pneumocystis jirovecii]
Length = 337
Score = 266 bits (680), Expect = 9e-69, Method: Compositional matrix adjust.
Identities = 142/309 (45%), Positives = 193/309 (62%), Gaps = 22/309 (7%)
Query: 1 MNINKVC--CYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPS 58
+N+ +C C E P L+E++ +GD +C CGLVVGDR++D SEWRTF+N++ G + S
Sbjct: 18 LNVRIICPDCKEDPPN-LVEEFSSGDTVCGSCGLVVGDRIVDTRSEWRTFANDEGGDNQS 76
Query: 59 RVGGPENPLLNGSDLSTMIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMA 118
RVG NPLLNGS L T+I G G G+SK Q R + +R L++A REI++M
Sbjct: 77 RVGSSANPLLNGSQLDTIISTQDG-----GHGLSKTQGRSVVQKGERNLMSAYREISAMC 131
Query: 119 DRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSK 178
D I+L K+I D A +FK+V D K LKGRSN++I SAC++IACRQ PRTFKEIC ++
Sbjct: 132 DAIHLPKSISDIAKQVFKRVDDSKALKGRSNESIISACIFIACRQGKAPRTFKEICTLTN 191
Query: 179 ISKKEIGRCFKLILKALETSVDLITTG--------------DFMSRFCSNLSLPNMVQKA 224
+ KKEIGR FK + K L + L TG D M RFC+ LSLP VQ A
Sbjct: 192 VPKKEIGRVFKSLQKMLTDNNILDNTGKTDDSYVPSSTSPKDLMVRFCNRLSLPTSVQIA 251
Query: 225 ATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKL 284
A+ +A +A + GRSPIS+AA+ IYMAS + +EI ++ GV++ TIR +Y+
Sbjct: 252 ASELASRASVEGTLAGRSPISIAASGIYMASYLFQHPKLPREIAEVVGVSDSTIRNAYRS 311
Query: 285 MYPHASKLF 293
+Y KL
Sbjct: 312 LYVEREKLI 320
>gi|224138070|ref|XP_002322722.1| predicted protein [Populus trichocarpa]
gi|222867352|gb|EEF04483.1| predicted protein [Populus trichocarpa]
Length = 312
Score = 265 bits (678), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 147/307 (47%), Positives = 194/307 (63%), Gaps = 14/307 (4%)
Query: 8 CYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPL 67
C H + ++ D+ AGD +CSECGLV+ ID SEWRTF+NE DP RVGGP NPL
Sbjct: 9 CKRHTE--VVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
Query: 68 LNGSDLSTMIG-PGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADRINLTKT 126
L LST+I P F + ++QNR + + DR L+ A + I +M+DR+ L T
Sbjct: 67 LTDGGLSTVIAKPNGASGEFLSSSLGRWQNRGS--NPDRGLITAFKTIATMSDRLGLVAT 124
Query: 127 IVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSK-ISKKEIG 185
I DRAN ++K+V D K+ +GR+ DA+ +ACLYIACRQE PRT KEIC+V+ +KKEIG
Sbjct: 125 IKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIG 184
Query: 186 RCFKLILK--ALET--SVDL--ITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVP 239
R + I+K LET SV++ I GDFM RFCSNL + N KAAT + + + DI
Sbjct: 185 RAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMSNHTVKAATEAVKTSEQFDIR- 243
Query: 240 GRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKLFPQDFVF 299
RSPIS+AAA IY+ +Q S DK+ ++I GVAE TIR SYK +YPH SK+ P +
Sbjct: 244 -RSPISIAAAVIYIITQLSDDKKPLRDISLATGVAEGTIRNSYKDLYPHVSKIIPSWYAS 302
Query: 300 HTPIHEL 306
+ L
Sbjct: 303 EEDLKNL 309
>gi|255588003|ref|XP_002534470.1| transcription initiation factor iib, putative [Ricinus communis]
gi|223525233|gb|EEF27913.1| transcription initiation factor iib, putative [Ricinus communis]
Length = 312
Score = 265 bits (678), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 147/299 (49%), Positives = 191/299 (63%), Gaps = 12/299 (4%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLST 75
++ D+ AGD +CSECGLV+ ID SEWRTF+NE DP RVGGP NPLL LST
Sbjct: 15 VVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLST 74
Query: 76 MIG-PGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADRINLTKTIVDRANNL 134
+I P F + ++QNR + + DR L+ A + I +M+DR+ L TI DRAN +
Sbjct: 75 VIAKPNGASGEFLSSSLGRWQNRGS--NPDRGLILAFKTIATMSDRLGLVATIKDRANEI 132
Query: 135 FKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSK-ISKKEIGRCFKLILK 193
+K+V D K+ +GR+ DA+ +ACLYIACRQE PRT KEIC+V+ +KKEIGR + I+K
Sbjct: 133 YKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYIVK 192
Query: 194 --ALET--SVDL--ITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVA 247
LET SV++ I GDFM RFCSNL + N KAA +K+ E DI RSPIS+A
Sbjct: 193 QLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAMKAAQEAVQKSEEFDIR--RSPISIA 250
Query: 248 AAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKLFPQDFVFHTPIHEL 306
AA IY+ SQ S DK+ ++I GVAE TIR SYK +YPH SK+ P + + L
Sbjct: 251 AAVIYIISQLSDDKKLLRDISHATGVAEGTIRNSYKDLYPHVSKIIPSWYAKEEDLKNL 309
>gi|225436547|ref|XP_002277679.1| PREDICTED: transcription initiation factor IIB [Vitis vinifera]
gi|297734946|emb|CBI17180.3| unnamed protein product [Vitis vinifera]
Length = 314
Score = 265 bits (677), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 147/301 (48%), Positives = 191/301 (63%), Gaps = 14/301 (4%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLST 75
++ D+ AGD +CSECGLV+ ID SEWRTF+NE + DP RVGGP NPLL LST
Sbjct: 15 VVLDHSAGDTVCSECGLVLEAHSIDEASEWRTFANESADNDPVRVGGPSNPLLADGGLST 74
Query: 76 MIG-PGRGDASFDGFGMS--KYQNRRTMNSSDRALLNAIREINSMADRINLTKTIVDRAN 132
+I P G S D S ++QNR + + DR+L+ A + I +M DR+ L TI D AN
Sbjct: 75 LISKPSNGGPSNDFLSSSLGRWQNRGS--NPDRSLIQAFKTIATMCDRLGLVATIKDLAN 132
Query: 133 NLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSK-ISKKEIGRCFKLI 191
++K+V D K L+GR+ DAI +AC+YIACRQE PRT KEIC+V+ +KKEIGR + I
Sbjct: 133 EIYKKVEDQKPLRGRNQDAILAACIYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYI 192
Query: 192 LKALET------SVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPIS 245
+K LE + I GDF+ RFCS+L + N KAA +K+ ELDI RSPIS
Sbjct: 193 VKQLEVEMGQSMEMGTIHAGDFLRRFCSHLGMTNQAVKAAQEAVQKSEELDI--RRSPIS 250
Query: 246 VAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKLFPQDFVFHTPIHE 305
VAAA IYM +Q S DK+ K+I GVAE TIR SYK +YP+AS++ P + +
Sbjct: 251 VAAAVIYMITQLSDDKKLLKDISLATGVAEGTIRNSYKDLYPYASRIIPSSYAKEEDLRN 310
Query: 306 L 306
L
Sbjct: 311 L 311
>gi|255544920|ref|XP_002513521.1| transcription initiation factor iib, putative [Ricinus communis]
gi|223547429|gb|EEF48924.1| transcription initiation factor iib, putative [Ricinus communis]
Length = 312
Score = 265 bits (676), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 142/290 (48%), Positives = 189/290 (65%), Gaps = 12/290 (4%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLST 75
++ D+ AGD +CSECGLV+ ID SEWRTF+NE + DP RVGGP NPLL LST
Sbjct: 15 VVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESADNDPVRVGGPSNPLLADGGLST 74
Query: 76 MIG-PGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADRINLTKTIVDRANNL 134
+I P F + ++QNR + + DR+L+ A + I +M+DR+ L TI DRAN +
Sbjct: 75 VISKPTGASGDFLTSSLGRWQNRGS--NPDRSLIQAFKTIATMSDRLGLVATIKDRANEI 132
Query: 135 FKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSK-ISKKEIGRCFKLILK 193
+K+V D K L+GR+ DA+ +ACLYIACRQE PRT KEIC+V+ +KKEIGR + I+K
Sbjct: 133 YKKVEDQKPLRGRNQDAVLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYIVK 192
Query: 194 ALETSV------DLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVA 247
LE + I GDF+ RFCS+L + N KAA +K+ ELDI RSPIS+A
Sbjct: 193 QLEVELGQSMEMGTIHAGDFLRRFCSHLGMNNQAVKAAQEAVKKSEELDI--RRSPISIA 250
Query: 248 AAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKLFPQDF 297
AA IYM +Q S +K+ K+I GVAE TIR SYK +YP+AS++ P +
Sbjct: 251 AAIIYMITQLSEEKKLLKDISTSTGVAEGTIRNSYKDLYPYASRIVPSWY 300
>gi|194695160|gb|ACF81664.1| unknown [Zea mays]
gi|414886465|tpg|DAA62479.1| TPA: hypothetical protein ZEAMMB73_928076 [Zea mays]
gi|414886466|tpg|DAA62480.1| TPA: hypothetical protein ZEAMMB73_928076 [Zea mays]
Length = 312
Score = 264 bits (675), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 144/307 (46%), Positives = 192/307 (62%), Gaps = 14/307 (4%)
Query: 8 CYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPL 67
C +H + D+ AGD +C+ECGLV+ +D SEWRTF+NE + DP RVGGP NPL
Sbjct: 9 CKKHTEVAF--DHSAGDMVCTECGLVLEAHSVDETSEWRTFANESNDNDPVRVGGPTNPL 66
Query: 68 LNGSDLSTMIG-PGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADRINLTKT 126
L LST+I P F + ++QNR + + DR+L+ A R I +MADR+ L T
Sbjct: 67 LTDGGLSTVIAKPNGAQGDFLSSSLGRWQNRGS--NPDRSLILAFRTIANMADRLGLVAT 124
Query: 127 IVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSK-ISKKEIG 185
I DRAN ++K+V D K+++GR+ DAI +ACLYIACRQE PRT KEIC+V+ +KKEIG
Sbjct: 125 IKDRANEIYKKVEDLKSIRGRNQDAILAACLYIACRQEDRPRTVKEICSVANGATKKEIG 184
Query: 186 RCFKLILKALET------SVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVP 239
R + I+K LE + I G+F+ RFCS L + N +AA + + ELDI
Sbjct: 185 RAKEFIVKQLEVEMGQSMEMGTIHAGNFLRRFCSTLGMNNQAVRAAQDAVKHSEELDI-- 242
Query: 240 GRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKLFPQDFVF 299
RSPIS+AAA IYM +Q S DK+ K+I GVAE TIR SYK +YP+AS+L P +
Sbjct: 243 RRSPISIAAAVIYMITQLSEDKKPLKDISLATGVAEGTIRNSYKDLYPYASRLIPNTYAK 302
Query: 300 HTPIHEL 306
+ L
Sbjct: 303 EEDLKNL 309
>gi|225441886|ref|XP_002284342.1| PREDICTED: transcription initiation factor IIB-2 [Vitis vinifera]
gi|297739630|emb|CBI29812.3| unnamed protein product [Vitis vinifera]
Length = 312
Score = 264 bits (675), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 144/302 (47%), Positives = 192/302 (63%), Gaps = 12/302 (3%)
Query: 13 DAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSD 72
+ ++ D+ AGD +CSECGLV+ ID SEWRTF+NE DP RVGGP NPLL
Sbjct: 12 NTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPSNPLLTDGG 71
Query: 73 LSTMIGPGRG-DASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADRINLTKTIVDRA 131
LST+I G F + ++QNR + + DR L+ A + I +M+DR+ L TI DRA
Sbjct: 72 LSTVIAKPNGVSGDFLSSSLGRWQNRGS--NPDRGLILAFKTIATMSDRLGLVATIKDRA 129
Query: 132 NNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSK-ISKKEIGRCFKL 190
N ++K+V D K+ +GR+ DA+ +ACLYIACRQE PRT KEIC+V+ +KKEIGR +
Sbjct: 130 NEIYKKVEDQKSTRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEY 189
Query: 191 ILKALET----SVDL--ITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPI 244
I+K LE SV++ I GDFM RFCSNL + N V KAA +K+ E DI RSP+
Sbjct: 190 IVKQLEAEKGQSVEMGTIHAGDFMRRFCSNLGMTNQVVKAAQEAVQKSEEFDI--RRSPV 247
Query: 245 SVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKLFPQDFVFHTPIH 304
S+AAA IY+ +Q S +K+ ++I GVAE TIR SYK +YPH SK+ P + +
Sbjct: 248 SIAAAVIYIITQLSDEKKLLRDISIATGVAEGTIRNSYKDLYPHISKIIPSWYAKEEDLR 307
Query: 305 EL 306
L
Sbjct: 308 NL 309
>gi|225464249|ref|XP_002269045.1| PREDICTED: transcription initiation factor IIB-2 [Vitis vinifera]
gi|296088031|emb|CBI35314.3| unnamed protein product [Vitis vinifera]
Length = 312
Score = 263 bits (673), Expect = 6e-68, Method: Compositional matrix adjust.
Identities = 143/302 (47%), Positives = 192/302 (63%), Gaps = 12/302 (3%)
Query: 13 DAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSD 72
+ ++ D+ AGD +CSECGLV+ ID SEWRTF+NE DP RVGGP NPLL
Sbjct: 12 NTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPSNPLLTDGG 71
Query: 73 LSTMIGPGRG-DASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADRINLTKTIVDRA 131
LST+I G F + ++QNR + + DR L+ A + I +M+DR+ L TI DRA
Sbjct: 72 LSTVIAKPNGVSGDFLSSSLGRWQNRGS--NPDRGLILAFKTIATMSDRLGLVATIKDRA 129
Query: 132 NNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSK-ISKKEIGRCFKL 190
N ++K+V D K+ +GR+ DA+ +ACLYIACRQE PRT KEIC+V+ +KKEIGR +
Sbjct: 130 NEIYKKVEDQKSTRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEY 189
Query: 191 ILKALET----SVDL--ITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPI 244
I+K LE SV++ I GDFM RFCSNL + N V KAA +K+ E DI RSP+
Sbjct: 190 IVKQLEAEKGQSVEMGTIHAGDFMRRFCSNLGMTNQVVKAAQEAVQKSEEFDI--RRSPV 247
Query: 245 SVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKLFPQDFVFHTPIH 304
S+AAA IY+ +Q S +K+ ++I GVAE TIR SYK +YPH S++ P + +
Sbjct: 248 SIAAAVIYIITQLSDEKKLLRDISIATGVAEGTIRNSYKDLYPHISRIIPSWYAKEEDLR 307
Query: 305 EL 306
L
Sbjct: 308 NL 309
>gi|449465789|ref|XP_004150610.1| PREDICTED: transcription initiation factor IIB-2-like [Cucumis
sativus]
gi|449529834|ref|XP_004171903.1| PREDICTED: transcription initiation factor IIB-2-like [Cucumis
sativus]
Length = 312
Score = 263 bits (671), Expect = 9e-68, Method: Compositional matrix adjust.
Identities = 146/287 (50%), Positives = 188/287 (65%), Gaps = 12/287 (4%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLST 75
++ D+ AGD +CSECGLV+ ID SEWRTF+NE DP RVGGP NPLL LST
Sbjct: 15 VVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLST 74
Query: 76 MIG-PGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADRINLTKTIVDRANNL 134
+I P F + ++QNR + + DR L+ A + I +M+DR+ L TI DRAN +
Sbjct: 75 VIAKPNGTTGEFLSSSLGRWQNRGS--NPDRGLILAFKTIATMSDRLGLVATIKDRANEI 132
Query: 135 FKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSK-ISKKEIGRCFKLILK 193
+K+V D K+ +GR+ DA+ +ACLYIACRQE PRT KEIC+V+ +KKEIGR + I+K
Sbjct: 133 YKRVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYIVK 192
Query: 194 --ALET--SVDL--ITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVA 247
LET SV++ I GDFM RFCSNL + N KAA +K+ E DI RSPIS+A
Sbjct: 193 QLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEEFDIR--RSPISIA 250
Query: 248 AAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKLFP 294
AA IY+ +Q S DK+ K+I GVAE TIR SYK +YPH SK+ P
Sbjct: 251 AAVIYIITQLSDDKKPLKDISVATGVAEGTIRNSYKDLYPHVSKILP 297
>gi|297829558|ref|XP_002882661.1| transcription initiation factor IIB-2 [Arabidopsis lyrata subsp.
lyrata]
gi|297328501|gb|EFH58920.1| transcription initiation factor IIB-2 [Arabidopsis lyrata subsp.
lyrata]
Length = 312
Score = 261 bits (668), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 147/307 (47%), Positives = 194/307 (63%), Gaps = 14/307 (4%)
Query: 8 CYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPL 67
C H + ++ D+ AGD +CSECGLV+ ID SEWRTF+NE DP RVGGP NPL
Sbjct: 9 CKRHTE--VVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
Query: 68 LNGSDLSTMIG-PGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADRINLTKT 126
L L+T+I P F + ++QNR + + DR L+ A + I +MADR+ L T
Sbjct: 67 LADGGLTTVISKPNGSSGDFLSSSLGRWQNRGS--NPDRGLIVAFKTIATMADRLGLVAT 124
Query: 127 IVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSK-ISKKEIG 185
I DRAN ++K+V D K+ +GR+ DA+ +ACLYIACRQE PRT KEIC+V+ +KKEIG
Sbjct: 125 IKDRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIG 184
Query: 186 RCFKLILK--ALET--SVDL--ITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVP 239
R + I+K LET SV++ I GDFM RFCSNL + N KAA +K+ E DI
Sbjct: 185 RAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMTNQTVKAAQESVQKSEEFDIR- 243
Query: 240 GRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKLFPQDFVF 299
RSPIS+AAA IY+ +Q S +K+ ++I GVAE TIR SYK +YPH SK+ P +
Sbjct: 244 -RSPISIAAAVIYIITQLSDEKKPLRDISVATGVAEGTIRNSYKDLYPHLSKIIPAWYAK 302
Query: 300 HTPIHEL 306
+ L
Sbjct: 303 EEDLKNL 309
>gi|356504767|ref|XP_003521166.1| PREDICTED: transcription initiation factor IIB-2-like [Glycine max]
Length = 306
Score = 261 bits (667), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 142/299 (47%), Positives = 183/299 (61%), Gaps = 18/299 (6%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLST 75
++ D+ AGD +CSECGLV+ ID SEWRTF+NE DP RVGGP NPLL LST
Sbjct: 15 VVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLTDGGLST 74
Query: 76 MIG-PGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADRINLTKTIVDRANNL 134
+I P G F + ++QNR L+ A + I +M+DR+ L TI DRAN +
Sbjct: 75 VIAKPNGGSGEFLSSSVGRWQNR--------GLIVAFKTIATMSDRLGLVATIKDRANEI 126
Query: 135 FKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSK-ISKKEIGRCFKLILK 193
+K+V D K+ +GR+ DA+ +ACLYIACRQE PRT KEIC+V+ +KKEIGR + I+K
Sbjct: 127 YKRVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYIVK 186
Query: 194 AL------ETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVA 247
L + I GDFM RFCSNL + N KAA +K+ E DI RSPIS+A
Sbjct: 187 QLGLEQGQSVEIGTIHAGDFMRRFCSNLGMTNQAVKAAQEAVQKSEEFDIR--RSPISIA 244
Query: 248 AAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKLFPQDFVFHTPIHEL 306
AA IY+ +Q S DK+ K+I GVAE TIR SYK +YPH SK+ P + + L
Sbjct: 245 AAVIYIITQLSDDKKPPKDISVATGVAEGTIRNSYKDLYPHVSKIIPSWYAKEEDLKNL 303
>gi|15228267|ref|NP_187644.1| transcription initiation factor IIB-2 [Arabidopsis thaliana]
gi|21363045|sp|Q9SS44.1|TF2B2_ARATH RecName: Full=Transcription initiation factor IIB-2; AltName:
Full=General transcription factor TFIIB-2;
Short=AtTFIIB2
gi|6056193|gb|AAF02810.1|AC009400_6 transcription initiation factor IIB (TFIIB) [Arabidopsis thaliana]
gi|15215784|gb|AAK91437.1| AT3g10330/F14P13_7 [Arabidopsis thaliana]
gi|16974427|gb|AAL31139.1| AT3g10330/F14P13_7 [Arabidopsis thaliana]
gi|21593436|gb|AAM65403.1| transcription initiation factor IIB (TFIIB) [Arabidopsis thaliana]
gi|39545880|gb|AAR28003.1| TFIIB2 [Arabidopsis thaliana]
gi|332641371|gb|AEE74892.1| transcription initiation factor IIB-2 [Arabidopsis thaliana]
Length = 312
Score = 260 bits (665), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 145/307 (47%), Positives = 191/307 (62%), Gaps = 14/307 (4%)
Query: 8 CYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPL 67
C H + ++ D+ AGD +CSECGLV+ ID SEWRTF+NE DP RVGGP NPL
Sbjct: 9 CKRHTE--VVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
Query: 68 LNGSDLSTMIG-PGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADRINLTKT 126
L L+T+I P F + ++QNR + + DR L+ A + I +MADR+ L T
Sbjct: 67 LADGGLTTVISKPNGSSGDFLSSSLGRWQNRGS--NPDRGLIVAFKTIATMADRLGLVAT 124
Query: 127 IVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSK-ISKKEIG 185
I DRAN ++K+V D K+ +GR+ DA+ +ACLYIACRQE PRT KEIC+V+ +KKEIG
Sbjct: 125 IKDRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIG 184
Query: 186 RCFKLILK--ALET----SVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVP 239
R + I+K LET + I GDFM RFCSNL + N KAA +K+ E DI
Sbjct: 185 RAKEYIVKQLGLETGQLVEMGTIHAGDFMRRFCSNLGMTNQTVKAAQESVQKSEEFDIR- 243
Query: 240 GRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKLFPQDFVF 299
RSPIS+AAA IY+ +Q S +K+ ++I GVAE TIR SYK +YPH SK+ P +
Sbjct: 244 -RSPISIAAAVIYIITQLSDEKKPLRDISVATGVAEGTIRNSYKDLYPHLSKIIPAWYAK 302
Query: 300 HTPIHEL 306
+ L
Sbjct: 303 EEDLKNL 309
>gi|224090077|ref|XP_002308933.1| predicted protein [Populus trichocarpa]
gi|222854909|gb|EEE92456.1| predicted protein [Populus trichocarpa]
Length = 312
Score = 260 bits (665), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 144/307 (46%), Positives = 192/307 (62%), Gaps = 14/307 (4%)
Query: 8 CYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPL 67
C +H + ++ D+ AGD +CSECGLV+ ID SEWR F+NE DP RVGGP NPL
Sbjct: 9 CKKHTE--VVCDHSAGDTVCSECGLVLESHSIDETSEWRIFANESGDNDPVRVGGPTNPL 66
Query: 68 LNGSDLSTMIG-PGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADRINLTKT 126
L LST+I P F + ++QNR + + DR L+ A + I +M+DR+ L T
Sbjct: 67 LTDGGLSTVIAKPNGASGDFLSTSLGRWQNRGS--NPDRGLILAFKTIATMSDRLGLVAT 124
Query: 127 IVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSK-ISKKEIG 185
I DRAN ++K+V D K+ +GR+ DA+ +ACLYIACRQE PRT KEIC+V+ +KKEIG
Sbjct: 125 IKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIG 184
Query: 186 RCFKLILKAL----ETSVDL--ITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVP 239
R + I+K L SV++ I GDFM RFCSNL + N KAAT + + + DI
Sbjct: 185 RAKEYIVKQLGLEAGQSVEMGTIHAGDFMRRFCSNLGMSNHTVKAATEAVKTSEQFDIR- 243
Query: 240 GRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKLFPQDFVF 299
RSPIS+AAA IY+ +Q S DK+ ++I GVAE TIR SYK +YPH SK+ P +
Sbjct: 244 -RSPISIAAAVIYIITQLSDDKKPLRDISLATGVAEGTIRNSYKDLYPHVSKIIPAWYAN 302
Query: 300 HTPIHEL 306
+ L
Sbjct: 303 EEDLKNL 309
>gi|1841399|emb|CAA84309.1| AtTFIIB2 [Arabidopsis thaliana]
Length = 301
Score = 260 bits (664), Expect = 7e-67, Method: Compositional matrix adjust.
Identities = 142/287 (49%), Positives = 185/287 (64%), Gaps = 12/287 (4%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLST 75
++ D+ AGD +CSECGLV+ ID SEWRTF+NE DP RVGGP NPLL L+T
Sbjct: 4 VVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLTT 63
Query: 76 MIG-PGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADRINLTKTIVDRANNL 134
+I P F + ++QNR + + DR L+ A + I +MADR+ L TI DRAN +
Sbjct: 64 VISKPNGSSGDFLSSSLGRWQNRGS--NPDRGLIVAFKTIATMADRLGLVATIKDRANEI 121
Query: 135 FKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSK-ISKKEIGRCFKLILK 193
+K+V D K+ +GR+ DA+ +ACLYIACRQE PRT KEIC+V+ +KKEIGR + I+K
Sbjct: 122 YKRVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYIVK 181
Query: 194 --ALET----SVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVA 247
LET + I GDFM RFCSNL + N KAA +K+ E DI RSPIS+A
Sbjct: 182 QLGLETGQLVEMGTIHAGDFMRRFCSNLGMTNQTVKAAQESVQKSEEFDIR--RSPISIA 239
Query: 248 AAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKLFP 294
AA IY+ +Q S +K+ ++I GVAE TIR SYK +YPH SK+ P
Sbjct: 240 AAVIYIITQLSDEKKPLRDISVATGVAEGTIRNSYKDLYPHLSKIIP 286
>gi|356500515|ref|XP_003519077.1| PREDICTED: transcription initiation factor IIB-like [Glycine max]
Length = 314
Score = 259 bits (663), Expect = 8e-67, Method: Compositional matrix adjust.
Identities = 144/301 (47%), Positives = 187/301 (62%), Gaps = 14/301 (4%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLST 75
++ D+ AGD +CSECGLV+ ID SEWRTF+NE DP+RVGGP NPLL LST
Sbjct: 15 VVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPNRVGGPSNPLLTDGGLST 74
Query: 76 MIGPGRGDASFDGF---GMSKYQNRRTMNSSDRALLNAIREINSMADRINLTKTIVDRAN 132
+I G F + ++QNR + + DRAL+ A + I +M+DR+ L TI DRAN
Sbjct: 75 VIAKPNGGGGGGEFLSSSLGRWQNRGS--NPDRALIIAFKTIATMSDRLGLVATIKDRAN 132
Query: 133 NLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSK-ISKKEIGRCFKLI 191
++K+V D K+ +GR+ DA+ +ACLYIACRQE PRT KEIC+V+ +KKEIGR + I
Sbjct: 133 EIYKRVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYI 192
Query: 192 LKAL------ETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPIS 245
+K L + I GDFM RFCSNL + N KAA K+ E DI RSPIS
Sbjct: 193 VKQLGLENGNAVEMGTIHAGDFMRRFCSNLCMNNQAVKAAQEAVHKSEEFDI--RRSPIS 250
Query: 246 VAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKLFPQDFVFHTPIHE 305
+AAA IY+ +Q S DK+ K+I GVAE TIR SYK +YPH SK+ P + +
Sbjct: 251 IAAAVIYIITQLSDDKKPLKDISLATGVAEGTIRNSYKDLYPHVSKIIPNWYAKEEDLKN 310
Query: 306 L 306
L
Sbjct: 311 L 311
>gi|357509669|ref|XP_003625123.1| Transcription initiation factor IIB [Medicago truncatula]
gi|355500138|gb|AES81341.1| Transcription initiation factor IIB [Medicago truncatula]
Length = 313
Score = 259 bits (662), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 143/300 (47%), Positives = 189/300 (63%), Gaps = 13/300 (4%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLST 75
++ D+ AGD +CSECGLV+ ID SEWRTF+NE DP RVGGP NPLL LST
Sbjct: 15 VVFDHSAGDAVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPSNPLLTDGGLST 74
Query: 76 MIG-PGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADRINLTKTIVDRANNL 134
+I P F + ++QNR + + DR L+ A + I +MA+R+ L TI DRAN +
Sbjct: 75 VIAKPNGASGDFLSSSLGRWQNRGS--NPDRGLILAFKTIGTMAERLGLVPTIKDRANEI 132
Query: 135 FKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSK-ISKKEIGRCFKLILK 193
+K+V D K+ +GR+ DA+ +ACLYIACRQE PRT KEIC+++ +KKEIGR + I+K
Sbjct: 133 YKRVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSIANGATKKEIGRAKEYIVK 192
Query: 194 AL-----ETSVDL--ITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISV 246
L SV++ I GDFM RFCSNL + + KAA +K+ E DI RSPIS+
Sbjct: 193 QLGLENGGQSVEMGTIHAGDFMRRFCSNLGMNHQAVKAAQESVQKSEEFDIR--RSPISI 250
Query: 247 AAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKLFPQDFVFHTPIHEL 306
AAA IY+ +Q S DK+ K+I GVAE TIR SYK +YPH SK+ P + + L
Sbjct: 251 AAAVIYIITQLSDDKKPLKDISVATGVAEGTIRNSYKDLYPHVSKIIPNWYAKEEDLKNL 310
>gi|339233058|ref|XP_003381646.1| putative transcription factor TFIIB repeat-containing domain
protein [Trichinella spiralis]
gi|316979508|gb|EFV62300.1| putative transcription factor TFIIB repeat-containing domain
protein [Trichinella spiralis]
Length = 1339
Score = 256 bits (653), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 139/263 (52%), Positives = 167/263 (63%), Gaps = 57/263 (21%)
Query: 3 INKVCCYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGG 62
++ V C HPDA LIED+RAGD IC ECGLVVGDR++DV SEWR+FS++ + DPSRVG
Sbjct: 1 MSNVSCPAHPDAELIEDHRAGDMICMECGLVVGDRIVDVSSEWRSFSSDSNSKDPSRVGS 60
Query: 63 PENPLLNGSDLSTMIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADRIN 122
PEN L++G L+T I G D S R+++ N
Sbjct: 61 PENNLMSGGGLATSIAGGGSDES------------RSLS--------------------N 88
Query: 123 LTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKK 182
L K D+AN LFKQV + K LKG++NDA+ASACLYIACR++GVPRTFKEICAVSK+SKK
Sbjct: 89 LQKRQADQANLLFKQVQETKALKGKNNDAVASACLYIACRKDGVPRTFKEICAVSKLSKK 148
Query: 183 EIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRS 242
E SRFC NL+LP VQ AATHIAR AVE D+V GRS
Sbjct: 149 E-------------------------SRFCGNLNLPQYVQTAATHIARAAVENDLVSGRS 183
Query: 243 PISVAAAAIYMASQASSDKRSQK 265
P+S+AAAAIYMASQAS +KR K
Sbjct: 184 PVSIAAAAIYMASQASLEKRCAK 206
>gi|19115141|ref|NP_594229.1| transcription factor TFIIB [Schizosaccharomyces pombe 972h-]
gi|21362985|sp|O13749.1|TF2B_SCHPO RecName: Full=Transcription initiation factor IIB; AltName:
Full=General transcription factor TFIIB
gi|2330704|emb|CAB11044.1| transcription factor TFIIB [Schizosaccharomyces pombe]
Length = 340
Score = 254 bits (648), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 141/320 (44%), Positives = 194/320 (60%), Gaps = 29/320 (9%)
Query: 1 MNINKVCCYEHPDAP-LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSN--EKSGVDP 57
+++ +C D P L+E++ +GD +C CGLV+GDR+ID SEWRTFSN E SG DP
Sbjct: 14 LSVKMICSECREDPPNLVEEFSSGDTVCGSCGLVLGDRIIDTRSEWRTFSNSDEASG-DP 72
Query: 58 SRVGGPENPLLNGSDLSTMIGPGRGDASFDGFG--MSKYQNRRTMNSSDRALLNAIREIN 115
SRVG NPLLNGS L T I +S+DG G ++K Q R ++ LL A +EI
Sbjct: 73 SRVGKVANPLLNGSQLDTTI------SSYDGAGAMLAKAQGRSVQVRGEKNLLTAYKEIG 126
Query: 116 SMADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICA 175
+M D I+L K I D A L+K+V D K LKG+S+ +I +AC+YIACRQ VPRTF EIC
Sbjct: 127 AMCDAISLPKVIADTAKQLYKRVDDHKALKGKSSQSIIAACIYIACRQGKVPRTFMEICT 186
Query: 176 VSKISKKEIGRCFKLILK------ALETSVDLI-----------TTGDFMSRFCSNLSLP 218
++ + KKEIGR +K + + AL SVD + + D M RFC+ L LP
Sbjct: 187 LTNVPKKEIGRVYKTLQRMLTEGGALHNSVDALKGHEYIQSSSTSAEDLMVRFCNRLMLP 246
Query: 219 NMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTI 278
VQ AA +AR+A + GRSPIS+AA+ IYM S ++ KEI ++ GV++ TI
Sbjct: 247 MSVQSAAAELARRAGLQGTLAGRSPISIAASGIYMISALMGYPKTPKEISEVTGVSDSTI 306
Query: 279 RQSYKLMYPHASKLFPQDFV 298
R +YKL++ +L ++
Sbjct: 307 RIAYKLLHAERKELIDPKWI 326
>gi|302755524|ref|XP_002961186.1| hypothetical protein SELMODRAFT_266576 [Selaginella moellendorffii]
gi|300172125|gb|EFJ38725.1| hypothetical protein SELMODRAFT_266576 [Selaginella moellendorffii]
Length = 300
Score = 249 bits (637), Expect = 9e-64, Method: Compositional matrix adjust.
Identities = 142/299 (47%), Positives = 185/299 (61%), Gaps = 22/299 (7%)
Query: 6 VCCYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPEN 65
VC + ++ D+ AGD +C ECGL+ TFS++ DP RVGGP N
Sbjct: 5 VCPDCRREVDIVVDHAAGDTVCMECGLL----------RMETFSDDSGSNDPVRVGGPSN 54
Query: 66 PLLNGSDLSTMIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADRINLTK 125
PLL LST I G G + D + K+QN T + DRALL A + I +MADR+ L
Sbjct: 55 PLLTDGGLSTTISRGNG-SQGDYAALGKWQNHGT--NPDRALLLAFKTIGTMADRLGLVS 111
Query: 126 TIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSK-ISKKEI 184
TI DRA+ ++K+V D K+++GRS DAI +ACLYIACRQE PRTFKEI +V+ +KKEI
Sbjct: 112 TIKDRADEIYKKVEDMKSIRGRSQDAILAACLYIACRQEDKPRTFKEIHSVANGATKKEI 171
Query: 185 GRCFKLILKALE------TSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIV 238
GR I+K LE S+ I GDF+ RFCS+L + N +AAT +K ELDI
Sbjct: 172 GRATNFIVKRLEEEMGKSMSMGSIHAGDFLRRFCSHLGMTNQAVRAATDTVKKVEELDIR 231
Query: 239 PGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKLFPQDF 297
+SPIS+AAAAIYM SQ S DK+ KEI +AGVAE TI+ S+ + PHA++L P +
Sbjct: 232 --KSPISIAAAAIYMISQVSEDKKPLKEISRVAGVAEATIKNSFNYLRPHATRLVPDWY 288
>gi|351707653|gb|EHB10572.1| Transcription initiation factor IIB [Heterocephalus glaber]
Length = 185
Score = 248 bits (634), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 123/148 (83%), Positives = 132/148 (89%)
Query: 162 RQEGVPRTFKEICAVSKISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMV 221
RQE VPRTFKEICAVS+ISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNL LPN V
Sbjct: 38 RQEEVPRTFKEICAVSQISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLCLPNQV 97
Query: 222 QKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQS 281
Q AATHIA KAVELD+V GRSPISVAAAAIYMASQAS++KR+QKE GDIAGVA VTIRQS
Sbjct: 98 QMAATHIACKAVELDLVLGRSPISVAAAAIYMASQASAEKRTQKETGDIAGVANVTIRQS 157
Query: 282 YKLMYPHASKLFPQDFVFHTPIHELPQL 309
Y+L+Y A LFP DF F TP+ +LPQL
Sbjct: 158 YRLIYLRAPDLFPSDFKFDTPVGKLPQL 185
>gi|401826726|ref|XP_003887456.1| transcription initiation factor TFIIIB subunit Brf1
[Encephalitozoon hellem ATCC 50504]
gi|337263124|gb|AEI69273.1| transcription initiation factor TFIIB [Encephalitozoon hellem]
gi|395459974|gb|AFM98475.1| transcription initiation factor TFIIIB subunit Brf1
[Encephalitozoon hellem ATCC 50504]
Length = 312
Score = 248 bits (632), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 127/293 (43%), Positives = 186/293 (63%), Gaps = 6/293 (2%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLST 75
+IEDY+ G +C CG VVG+R+ID GSEWR+F + + VDP R+G NP L L T
Sbjct: 23 IIEDYKNGYHVCGRCGCVVGNRIIDEGSEWRSFG-DSNKVDPCRIGSASNPYLESEQLDT 81
Query: 76 MIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADRINLTKTIVDRANNLF 135
MI G G + + +SK Q + +M +RAL + + I + +R NL++TI+DRA+ +F
Sbjct: 82 MISTGGG---MNSYMLSKIQMKNSMRGPERALKHGMNLITAFCERSNLSRTIIDRAHYIF 138
Query: 136 KQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGRCFKLILKAL 195
K + + K LKG++ + I +AC+YIACRQE PRTFKEI ++ + K+EIGRCFKLI L
Sbjct: 139 KNIEERKLLKGKNVEGIVAACIYIACRQEECPRTFKEISVMTAVQKREIGRCFKLISPHL 198
Query: 196 ETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMAS 255
E + +T + ++RFCS+L+L +QK AT IA+ A EL + G+SP S+AAA IYM +
Sbjct: 199 ERMATM-STENIIARFCSDLNLNIKIQKIATEIAKAAHELGCLAGKSPDSIAAAVIYMVT 257
Query: 256 QA-SSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKLFPQDFVFHTPIHELP 307
+K+ QK+I + V EVTI+ +YK + + P++ V I +LP
Sbjct: 258 NLFPEEKKIQKDIQFVTNVTEVTIKNTYKELVAFKYDIIPENMVNKESIDKLP 310
>gi|337263062|gb|AEI69242.1| transcription initiation factor TFIIB [Encephalitozoon romaleae]
gi|396081581|gb|AFN83197.1| transcription initiation factor TFIIB subunit Brf1 [Encephalitozoon
romaleae SJ-2008]
Length = 312
Score = 248 bits (632), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 126/293 (43%), Positives = 186/293 (63%), Gaps = 6/293 (2%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLST 75
+IEDY+ G +C CG +VG+R+ID GSEWR+F + + VDP R+G NP L L T
Sbjct: 23 IIEDYKNGYHVCGRCGCIVGNRIIDEGSEWRSFG-DSNKVDPCRIGSASNPYLESEQLDT 81
Query: 76 MIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADRINLTKTIVDRANNLF 135
MI G G + + +SK Q + +M +RAL + + I + +R NL++TI+DRA+ +F
Sbjct: 82 MISTGGG---VNSYMLSKIQMKNSMRGPERALKHGMNLITAFCERSNLSRTIIDRAHYIF 138
Query: 136 KQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGRCFKLILKAL 195
K + + K LKG++ + I +AC+YIACRQE PRTFKEI ++ + K+EIGRCFKLI L
Sbjct: 139 KNIEERKLLKGKNVEGIVAACMYIACRQEECPRTFKEISVMTAVQKREIGRCFKLISPHL 198
Query: 196 ETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMAS 255
E + +T + ++RFCS+L+L +QK AT IA+ A EL + G+SP S+AAA IYM +
Sbjct: 199 ERMATM-STENIIARFCSDLNLSIKIQKIATEIAKAAHELGCLAGKSPDSIAAAVIYMVT 257
Query: 256 QA-SSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKLFPQDFVFHTPIHELP 307
+K+ QK+I + V EVTI+ +YK + + P++ V I +LP
Sbjct: 258 NLFPEEKKIQKDIQFVTNVTEVTIKNTYKELVAFKYDIIPENMVNRESIDKLP 310
>gi|19074360|ref|NP_585866.1| TRANSCRIPTION INITIATION FACTOR TFIIB [Encephalitozoon cuniculi
GB-M1]
gi|51702029|sp|Q8SRP3.1|TF2B_ENCCU RecName: Full=Transcription initiation factor IIB; AltName:
Full=General transcription factor TFIIB
gi|19069002|emb|CAD25470.1| TRANSCRIPTION INITIATION FACTOR TFIIB [Encephalitozoon cuniculi
GB-M1]
gi|449329432|gb|AGE95704.1| transcription initiation factor TFIIB [Encephalitozoon cuniculi]
Length = 312
Score = 246 bits (628), Expect = 8e-63, Method: Compositional matrix adjust.
Identities = 125/293 (42%), Positives = 186/293 (63%), Gaps = 6/293 (2%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLST 75
++EDY+ G +C CG +VG+R+ID GSEWR+F + + VDP R+G NP L L T
Sbjct: 23 IVEDYKNGYHVCGRCGCIVGNRIIDEGSEWRSFG-DSNKVDPCRIGSASNPYLESEQLDT 81
Query: 76 MIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADRINLTKTIVDRANNLF 135
MI G G + + +SK Q + +M +RAL + + I + +R NL++TI+DRA+ +F
Sbjct: 82 MISTGGG---MNSYVLSKIQMKNSMRGPERALKHGMNLITAFCERSNLSRTIIDRAHYIF 138
Query: 136 KQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGRCFKLILKAL 195
K + + K LKG++ + I +AC+YIACRQE PRTFKEI ++ + K+EIGRCFKLI L
Sbjct: 139 KNIEERKLLKGKNVEGIVAACIYIACRQEECPRTFKEISVMTAVQKREIGRCFKLISPHL 198
Query: 196 ETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMAS 255
E + +T + ++RFCS+L+L +QK AT IA+ A EL + G+SP S+AAA IYM +
Sbjct: 199 ERMATM-STENIIARFCSDLNLNIKIQKIATEIAKAAHELGCLAGKSPDSIAAAVIYMVT 257
Query: 256 QA-SSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKLFPQDFVFHTPIHELP 307
+K+ QK+I + V EVTI+ +YK + + P++ V I +LP
Sbjct: 258 NLFPEEKKIQKDIQFVTNVTEVTIKNTYKELLTFKYDIIPENMVNKESIDKLP 310
>gi|303389676|ref|XP_003073070.1| transcription initiation factor TFIIB subunit Brf1 [Encephalitozoon
intestinalis ATCC 50506]
gi|303302214|gb|ADM11710.1| transcription initiation factor TFIIB subunit Brf1 [Encephalitozoon
intestinalis ATCC 50506]
Length = 312
Score = 246 bits (628), Expect = 9e-63, Method: Compositional matrix adjust.
Identities = 125/293 (42%), Positives = 186/293 (63%), Gaps = 6/293 (2%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLST 75
++EDY+ G +C CG +VG+R+ID GSEWR+F + + VDP R+G NP L L T
Sbjct: 23 IVEDYKNGYHVCGRCGCIVGNRIIDEGSEWRSFG-DSNKVDPCRIGSASNPYLESEQLDT 81
Query: 76 MIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADRINLTKTIVDRANNLF 135
+I G G + + +SK Q + +M +RAL + + I + +R NL++TI+DRA+ +F
Sbjct: 82 IISTGGG---MNSYMLSKIQMKNSMRGPERALKHGMNLITAFCERSNLSRTIIDRAHYIF 138
Query: 136 KQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGRCFKLILKAL 195
K + + K LKG++ + I +AC+YIACRQE PRTFKEI ++ + K+EIGRCFKLI L
Sbjct: 139 KNIEERKLLKGKNVEGIVAACIYIACRQEECPRTFKEISVMTAVQKREIGRCFKLISPHL 198
Query: 196 ETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMAS 255
E + +T + ++RFCS+L+L +QK AT IA+ A EL + G+SP S+AAA IYM +
Sbjct: 199 ERMATM-STENIIARFCSDLNLNIKIQKIATEIAKAAHELGCLAGKSPDSIAAAVIYMVT 257
Query: 256 QA-SSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKLFPQDFVFHTPIHELP 307
+KR QK+I + V EVTI+ +YK + + P++ V I +LP
Sbjct: 258 NLFPEEKRIQKDIQFVTNVTEVTIKNTYKELLAFKYDIIPENMVCKENIDKLP 310
>gi|213404006|ref|XP_002172775.1| transcription factor TFIIB [Schizosaccharomyces japonicus yFS275]
gi|212000822|gb|EEB06482.1| transcription factor TFIIB [Schizosaccharomyces japonicus yFS275]
Length = 339
Score = 244 bits (624), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 140/319 (43%), Positives = 196/319 (61%), Gaps = 27/319 (8%)
Query: 1 MNINKVCCYEHPDAP-LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSN-EKSGVDPS 58
+++ +C D P L+E++ +GD +C CGLV+GDR++D SEWRTFSN +++ DPS
Sbjct: 14 LSVKMICSECREDPPNLVEEFSSGDTVCGSCGLVLGDRIVDTRSEWRTFSNSDEANGDPS 73
Query: 59 RVGGPENPLLNGSDLSTMIGPGRGDASFDGFG--MSKYQNRRTMNSSDRALLNAIREINS 116
RVG NPLLNGS L T I +S DG G ++K Q R ++ LL A +EI++
Sbjct: 74 RVGKVANPLLNGSQLDTSI------SSTDGTGAMLAKAQGRSVQVRGEKNLLTAYKEISA 127
Query: 117 MADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAV 176
M D I+L K I D A LFK+V D K LKG+S+ +I +AC+YIACRQ VPRTF EIC +
Sbjct: 128 MCDAISLPKVIADTAKQLFKRVDDHKALKGKSSQSIIAACIYIACRQGKVPRTFMEICTL 187
Query: 177 SKISKKEIGRCFKLILK------ALETSVDLI-----------TTGDFMSRFCSNLSLPN 219
+ ++KKEIGR +K + + AL SVD + D M RFC+ L LP
Sbjct: 188 TNVAKKEIGRVYKTLQRMLTEGGALHNSVDAFKGQEYIQNSSTSAEDLMVRFCNRLQLPT 247
Query: 220 MVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIR 279
VQ AA +AR+A + + GRSPIS+AA+ IYM S ++ KEI ++ GV++ TIR
Sbjct: 248 FVQLAAAELARRAGQEGTLAGRSPISIAASGIYMISSLMGYPKTPKEISEVTGVSDSTIR 307
Query: 280 QSYKLMYPHASKLFPQDFV 298
+YKL++ +KL +V
Sbjct: 308 IAYKLLHAERNKLVDPKWV 326
>gi|324514940|gb|ADY46036.1| Transcription initiation factor IIB [Ascaris suum]
Length = 202
Score = 244 bits (623), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 120/200 (60%), Positives = 156/200 (78%), Gaps = 4/200 (2%)
Query: 108 LNAIREINSMADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVP 167
L IRE M+ R+ L K+I D A +F+ V D + L G++N+A A+ACLYIACR+EGVP
Sbjct: 5 LGVIRE---MSARMQLPKSIEDSAAKVFRDVVDTRALVGKNNEAKAAACLYIACRKEGVP 61
Query: 168 RTFKEICAVSKISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATH 227
RTFKE+CAVS++SKKEIGRCFKL +++LET+++ IT+ DFMSRFC NL L + +Q AT
Sbjct: 62 RTFKEVCAVSRVSKKEIGRCFKLAIRSLETNLEQITSADFMSRFCGNLGLSHALQMVATT 121
Query: 228 IARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYP 287
IA+KAVE D+V GRSPIS+AAAAIYMASQAS+++R+ KEIG IAG AE T++ +YKLM P
Sbjct: 122 IAKKAVERDLVAGRSPISIAAAAIYMASQASNERRTAKEIGAIAGAAETTVKLTYKLMLP 181
Query: 288 HASKLFPQDFVFHTPIHELP 307
A +LFP DF + I+ LP
Sbjct: 182 CAHELFPHDFSYMA-INSLP 200
>gi|384485742|gb|EIE77922.1| hypothetical protein RO3G_02626 [Rhizopus delemar RA 99-880]
Length = 340
Score = 244 bits (623), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 136/307 (44%), Positives = 198/307 (64%), Gaps = 11/307 (3%)
Query: 1 MNINKVCCYEHPDAPLI-----EDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGV 55
+NIN +C PD ++ E++ +GD +C +CGLV+GDR+ID SEWRTF+N++ G
Sbjct: 27 LNINLMC----PDCKIVPPHIVEEFASGDLVCGDCGLVLGDRIIDTRSEWRTFANDE-GD 81
Query: 56 DPSRVGGPENPLLNGSDLSTMIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREIN 115
DPSRVG NPLL+G+ L T+I R + ++K R T +R L+ A +EI
Sbjct: 82 DPSRVGAAANPLLDGNQLDTVISR-RDGGTGAAKDLNKVHGRATAIKGERNLVQAYKEIG 140
Query: 116 SMADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICA 175
+M D I+L+K + D A L+K+V D K L+G+S+DAI +AC++IACRQE V RTF+EICA
Sbjct: 141 AMCDSISLSKIVSDTAKQLYKRVEDEKLLRGKSSDAIIAACIFIACRQEKVGRTFREICA 200
Query: 176 VSKISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVEL 235
++++ KKEIGRC K + L+T+ ++ + D M RFCSNL L N VQKA + ++ EL
Sbjct: 201 LTRVPKKEIGRCCKSLQLKLQTNTTIMNSEDLMLRFCSNLQLANYVQKAGIDLVKRVKEL 260
Query: 236 DIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKLFPQ 295
+ G+SPISVAAA IY+ S ++ +EI +AGV+EVTI+ +YK +Y L
Sbjct: 261 GTLAGKSPISVAAACIYLVSYLYRQPKATREIAHVAGVSEVTIKTAYKTLYAEKESLLDI 320
Query: 296 DFVFHTP 302
+ + P
Sbjct: 321 NDLRQKP 327
>gi|241842222|ref|XP_002415383.1| transcription initiation factor iib, putative [Ixodes scapularis]
gi|215509595|gb|EEC19048.1| transcription initiation factor iib, putative [Ixodes scapularis]
Length = 159
Score = 244 bits (622), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 117/135 (86%), Positives = 127/135 (94%)
Query: 76 MIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADRINLTKTIVDRANNLF 135
MIG G GDASFD G +KYQNR+TM+SSDRAL+NA REI++MADRINLTKTIVDR+N LF
Sbjct: 1 MIGKGTGDASFDESGTAKYQNRKTMSSSDRALVNAFREISNMADRINLTKTIVDRSNLLF 60
Query: 136 KQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGRCFKLILKAL 195
KQVHDGK LKGRSNDAIASACLYIACRQEGVPRTFKEICAVSK+SKKEIGRCFKLILKAL
Sbjct: 61 KQVHDGKTLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKVSKKEIGRCFKLILKAL 120
Query: 196 ETSVDLITTGDFMSR 210
ETSVDLITTGDFM++
Sbjct: 121 ETSVDLITTGDFMAK 135
>gi|119889896|ref|XP_001254280.1| PREDICTED: transcription initiation factor IIB-like [Bos taurus]
Length = 149
Score = 243 bits (620), Expect = 8e-62, Method: Compositional matrix adjust.
Identities = 118/143 (82%), Positives = 128/143 (89%)
Query: 167 PRTFKEICAVSKISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAAT 226
P EICAVS+ISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNL LP VQ AAT
Sbjct: 7 PSLIPEICAVSRISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLCLPKQVQMAAT 66
Query: 227 HIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMY 286
HIARKAVELD+VPGRSPISVAAAAIYMASQAS++KR+QKEIGDIAGVA+VTIRQSY+L+Y
Sbjct: 67 HIARKAVELDLVPGRSPISVAAAAIYMASQASAEKRTQKEIGDIAGVADVTIRQSYRLIY 126
Query: 287 PHASKLFPQDFVFHTPIHELPQL 309
P A LFP DF F TP+ +LPQL
Sbjct: 127 PRAPDLFPTDFKFDTPVDKLPQL 149
>gi|356570450|ref|XP_003553400.1| PREDICTED: transcription initiation factor IIB-like [Glycine max]
Length = 296
Score = 243 bits (619), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 138/299 (46%), Positives = 180/299 (60%), Gaps = 28/299 (9%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLST 75
++ D+ AGD +CSECGLV+ ID SEWRTF+NE DP RVGGP NPLL LST
Sbjct: 15 VVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLTDGGLST 74
Query: 76 MIG-PGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADRINLTKTIVDRANNL 134
+I P G + F + ++Q+R ++ R+ L TI DRAN +
Sbjct: 75 VIAKPSGGSSEFLSSSLGRWQSR-------------VKNF-----RLGLVATIKDRANEI 116
Query: 135 FKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSK-ISKKEIGRCFKLILK 193
+K+V D K+ +GR+ DA+ +ACLYIACRQE PRT KEIC+V+ +KKEIGR + I+K
Sbjct: 117 YKRVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYIVK 176
Query: 194 AL----ETSVDL--ITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVA 247
L SV++ I GDFM RFCSNL + N KAA +K+ E DI RSPIS+A
Sbjct: 177 QLGLEQGQSVEMGTIHAGDFMRRFCSNLGMTNQAVKAAQEAVQKSEEFDIR--RSPISIA 234
Query: 248 AAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKLFPQDFVFHTPIHEL 306
AA IY+ +Q S DK+ K+I GVAE TIR SYK +YPH SK+ P + + L
Sbjct: 235 AAVIYIITQLSDDKKPLKDISVATGVAEGTIRNSYKDLYPHVSKIIPSWYAKEDDLKNL 293
>gi|387596531|gb|EIJ94152.1| transcription initiation factor TFIIB [Nematocida parisii ERTm1]
Length = 312
Score = 240 bits (613), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 123/293 (41%), Positives = 187/293 (63%), Gaps = 7/293 (2%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLST 75
+IEDY+ G +C CG +VG R+ID EWRTFS+ SG +PSRVGGP NP L+ L T
Sbjct: 24 IIEDYKNGYNVCGSCGCIVGSRIIDERGEWRTFSD--SGENPSRVGGPNNPFLDTEQLDT 81
Query: 76 MIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADRINLTKTIVDRANNLF 135
+I G G AS+ ++K Q + ++ +RAL+N + I + +R NL+KTI D A +F
Sbjct: 82 LISSGSGLASY---SLAKTQMKSSLRGPERALINGLNLITAFCERKNLSKTISDAAKYVF 138
Query: 136 KQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGRCFKLILKAL 195
K V + K LKG++ + IA+AC+YIACRQ G RTFKE+ ++ + KKEIGRC+K I +
Sbjct: 139 KTVENKKVLKGKNLEGIAAACIYIACRQAGFVRTFKEVSILTAVPKKEIGRCYKAIFPHI 198
Query: 196 ETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMAS 255
+ + +++T D ++RFCS+L+L +QK A I+++A + + G+SP S+AAA IY+ +
Sbjct: 199 D-KLAVVSTEDIVARFCSDLTLSIDIQKVALTISQRAQAIGCIAGKSPDSIAAAIIYLIT 257
Query: 256 QA-SSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKLFPQDFVFHTPIHELP 307
+ K+ QK I + V +VTI+ +YK + P+ +L P+ V + LP
Sbjct: 258 YLFPTQKKIQKNIQIVTNVTDVTIKNTYKELLPYRYELVPEGIVPRHILDSLP 310
>gi|387594621|gb|EIJ89645.1| transcription initiation factor TFIIB [Nematocida parisii ERTm3]
Length = 312
Score = 240 bits (613), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 123/293 (41%), Positives = 187/293 (63%), Gaps = 7/293 (2%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLST 75
+IEDY+ G +C CG +VG R+ID EWRTFS+ SG +PSRVGGP NP L+ L T
Sbjct: 24 IIEDYKNGYNVCGSCGCIVGSRIIDERGEWRTFSD--SGENPSRVGGPNNPFLDTEQLDT 81
Query: 76 MIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADRINLTKTIVDRANNLF 135
+I G G AS+ ++K Q + ++ +RAL+N + I + +R NL+KTI D A +F
Sbjct: 82 LISSGSGLASY---SLAKTQMKSSLRGPERALINGLNLITAFCERKNLSKTISDAAKYVF 138
Query: 136 KQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGRCFKLILKAL 195
K V + K LKG++ + IA+AC+YIACRQ G RTFKE+ ++ + KKEIGRC+K I +
Sbjct: 139 KTVENKKVLKGKNLEGIAAACIYIACRQAGFVRTFKEVSILTAVPKKEIGRCYKAIFPHI 198
Query: 196 ETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMAS 255
+ + +++T D ++RFCS+L+L +QK A I+++A + + G+SP S+AAA IY+ +
Sbjct: 199 D-KLAVVSTEDIVARFCSDLTLSIDIQKVALTISQRAQAIGCIAGKSPDSIAAAIIYLIT 257
Query: 256 QA-SSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKLFPQDFVFHTPIHELP 307
+ K+ QK I + V +VTI+ +YK + P+ +L P+ V + LP
Sbjct: 258 YLFPTQKKIQKNIQIVTNVTDVTIKNTYKELLPYRYELVPEGIVPRHILDSLP 310
>gi|440638525|gb|ELR08444.1| transcription initiation factor TFIIB [Geomyces destructans
20631-21]
Length = 349
Score = 240 bits (612), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 135/321 (42%), Positives = 190/321 (59%), Gaps = 26/321 (8%)
Query: 1 MNINKVC--CYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVD-P 57
+N+ +C C E P L+E++ +GD +C CGLV+GDR++D SEWRTF+N+ G D P
Sbjct: 19 LNMQMICKECKEFP-PNLVEEFSSGDMVCGSCGLVLGDRIVDTRSEWRTFANDDQGNDDP 77
Query: 58 SRVGGPENPLLNGSDLSTMIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSM 117
SRVG NPLLNGS LST I GD S + + QN+ + + LL A +EI +
Sbjct: 78 SRVGDGANPLLNGSQLSTTIA--FGDGSGRSRDLQRAQNKSAHDKGTKNLLAAYKEIGAH 135
Query: 118 ADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVS 177
D I + KT D A +LFK V D K KG+S +A+ + C++IACRQ GVPRTF+EI A++
Sbjct: 136 CDAIGIPKTGADVAKHLFKMVDDAKAFKGKSQEALIAGCIFIACRQSGVPRTFREIYALT 195
Query: 178 KISKKEIGRCFKLILK--ALETSVDLITTG-----------------DFMSRFCSNLSL- 217
K+SKK+IGR FK + K A + + +T G D + RFCS L L
Sbjct: 196 KVSKKDIGRTFKALEKFFASDENKAALTNGSLAQTDAYQATTSTNAVDLVVRFCSQLGLH 255
Query: 218 PNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVT 277
K + +A K + + GRSP+SVAAA IYMAS +S +EIG++AGV++ T
Sbjct: 256 GQQFVKVSQGLADKVSTMGDLAGRSPLSVAAACIYMASHLLGKPKSAREIGNMAGVSDGT 315
Query: 278 IRQSYKLMYPHASKLFPQDFV 298
IR +YK +Y +L +++
Sbjct: 316 IRTAYKFLYQDRERLLEPEWL 336
>gi|347835786|emb|CCD50358.1| similar to transcription initiation factor iib [Botryotinia
fuckeliana]
Length = 350
Score = 239 bits (609), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 138/324 (42%), Positives = 194/324 (59%), Gaps = 29/324 (8%)
Query: 1 MNINKVC--CYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVD-P 57
+N+ +C C E P L+E++ +GD +C CG+V+GDR++D SEWRTFSN+ G D P
Sbjct: 17 LNVTVMCKDCKEIP-PNLVEEFSSGDLVCDTCGVVIGDRIVDTRSEWRTFSNDDQGNDDP 75
Query: 58 SRVGGPENPLLNGSDLSTMIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSM 117
SRVG NPLLNGS LST I GD+S + + Q ++ + S +ALL A +EI +
Sbjct: 76 SRVGDAANPLLNGSQLSTTIA--FGDSSVRSRELYRAQGKQGTDKSTKALLAAYKEIGAH 133
Query: 118 ADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVS 177
D +N+ K + D A +LFK V D K KG+S +AI + C++IACRQ GVPRTF+EI A++
Sbjct: 134 CDAVNIPKNVSDTAKHLFKLVDDAKAFKGKSQEAIIAGCIFIACRQCGVPRTFREIYALT 193
Query: 178 KISKKEIGRCFKLILK--ALETSVDLIT---TG-----------------DFMSRFCSNL 215
K+SKK+IGR FK + K A ++S T TG D +R+CS L
Sbjct: 194 KVSKKDIGRTFKALEKFFASDSSAKKATADATGALAAPDGYQTTTSTNAKDLCTRYCSQL 253
Query: 216 SLPN-MVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVA 274
L + K + +A K + + GRSP+SVAAA IYMAS +S KEI +AGV+
Sbjct: 254 GLKSQQFVKISQGLAEKVSTVGDLAGRSPLSVAAACIYMASALLGKPKSAKEISQVAGVS 313
Query: 275 EVTIRQSYKLMYPHASKLFPQDFV 298
+ TIR +YK +Y KL +++
Sbjct: 314 DGTIRTAYKYLYADREKLIEPEWI 337
>gi|154292104|ref|XP_001546629.1| hypothetical protein BC1G_14861 [Botryotinia fuckeliana B05.10]
Length = 348
Score = 239 bits (609), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 138/324 (42%), Positives = 194/324 (59%), Gaps = 29/324 (8%)
Query: 1 MNINKVC--CYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVD-P 57
+N+ +C C E P L+E++ +GD +C CG+V+GDR++D SEWRTFSN+ G D P
Sbjct: 16 LNVTVMCKDCKEIP-PNLVEEFSSGDLVCDTCGVVIGDRIVDTRSEWRTFSNDDQGNDDP 74
Query: 58 SRVGGPENPLLNGSDLSTMIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSM 117
SRVG NPLLNGS LST I GD+S + + Q ++ + S +ALL A +EI +
Sbjct: 75 SRVGDAANPLLNGSQLSTTIA--FGDSSVRSRELYRAQGKQGTDKSTKALLAAYKEIGAH 132
Query: 118 ADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVS 177
D +N+ K + D A +LFK V D K KG+S +AI + C++IACRQ GVPRTF+EI A++
Sbjct: 133 CDAVNIPKNVSDTAKHLFKLVDDAKAFKGKSQEAIIAGCIFIACRQCGVPRTFREIYALT 192
Query: 178 KISKKEIGRCFKLILK--ALETSVDLIT---TG-----------------DFMSRFCSNL 215
K+SKK+IGR FK + K A ++S T TG D +R+CS L
Sbjct: 193 KVSKKDIGRTFKALEKFFASDSSAKKATADATGALAAPDGYQTTTSTNAKDLCTRYCSQL 252
Query: 216 SLPN-MVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVA 274
L + K + +A K + + GRSP+SVAAA IYMAS +S KEI +AGV+
Sbjct: 253 GLKSQQFVKISQGLAEKVSTVGDLAGRSPLSVAAACIYMASALLGKPKSAKEISQVAGVS 312
Query: 275 EVTIRQSYKLMYPHASKLFPQDFV 298
+ TIR +YK +Y KL +++
Sbjct: 313 DGTIRTAYKYLYADREKLIEPEWI 336
>gi|378756507|gb|EHY66531.1| transcription initiation factor IIB [Nematocida sp. 1 ERTm2]
Length = 308
Score = 238 bits (607), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 123/293 (41%), Positives = 185/293 (63%), Gaps = 7/293 (2%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLST 75
+IEDY+ G +C CG VVG R+ID EWRTFS+ SG +PSRVGGP NP L+ L T
Sbjct: 20 IIEDYKNGYNVCGSCGCVVGSRIIDERGEWRTFSD--SGENPSRVGGPNNPFLDTEQLDT 77
Query: 76 MIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADRINLTKTIVDRANNLF 135
+I G G AS+ ++K Q + ++ +RAL+N + I + +R NL+KTI D A +F
Sbjct: 78 LISSGSGLASYS---LAKTQMKSSLRGPERALINGLNLITAFCERKNLSKTISDAAKYVF 134
Query: 136 KQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGRCFKLILKAL 195
K V + K LKG++ + I +AC+YIACRQ G RTFKE+ ++ + KKEIGRC+K I +
Sbjct: 135 KTVENKKVLKGKNLEGIGAACIYIACRQAGFVRTFKEVSILTAVPKKEIGRCYKAIFPHI 194
Query: 196 ETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMAS 255
+ + +++T D ++RFCS+L+L +QK A I+++A + + G+SP S+AAA IY+ +
Sbjct: 195 D-KLAVVSTEDIVARFCSDLTLSIDIQKVALTISQRAQAIGCIAGKSPDSIAAAIIYLIT 253
Query: 256 QA-SSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKLFPQDFVFHTPIHELP 307
K+ QK I + V +VTI+ +YK + P+ +L P+ V + LP
Sbjct: 254 YLFPMQKKIQKNIQIVTNVTDVTIKNTYKELLPYRYELVPEGIVPKHILDSLP 306
>gi|147790475|emb|CAN74371.1| hypothetical protein VITISV_004775 [Vitis vinifera]
Length = 312
Score = 236 bits (602), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 130/272 (47%), Positives = 173/272 (63%), Gaps = 12/272 (4%)
Query: 43 SEWRTFSNEKSGVDPSRVGGPENPLLNGSDLSTMIGPGRG-DASFDGFGMSKYQNRRTMN 101
SEWRTF+NE DP RVGGP NPLL LST+I G F + ++QNR +
Sbjct: 42 SEWRTFANESGDNDPVRVGGPSNPLLTDGGLSTVIAKPNGVSGDFLSSSLGRWQNRGS-- 99
Query: 102 SSDRALLNAIREINSMADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIAC 161
+ DR L+ A + I +M+DR+ L TI DRAN ++K+V D K+ +GR+ DA+ +ACLYIAC
Sbjct: 100 NPDRGLILAFKTIATMSDRLGLVATIKDRANEIYKKVEDQKSTRGRNQDALLAACLYIAC 159
Query: 162 RQEGVPRTFKEICAVSK-ISKKEIGRCFKLILKALET----SVDL--ITTGDFMSRFCSN 214
RQE PRT KEIC+V+ +KKEIGR + I+K LE SV++ I GDFM RFCSN
Sbjct: 160 RQEDKPRTVKEICSVANGATKKEIGRAKEYIVKQLEAEKGQSVEMGTIHAGDFMRRFCSN 219
Query: 215 LSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVA 274
L + N V KAA +K+ E DI RSP+S+AAA IY+ +Q S +K+ ++I GVA
Sbjct: 220 LGMTNQVVKAAQEAVQKSEEFDI--RRSPVSIAAAVIYIITQLSDEKKLLRDISIATGVA 277
Query: 275 EVTIRQSYKLMYPHASKLFPQDFVFHTPIHEL 306
E TIR SYK +YPH S++ P + + L
Sbjct: 278 EGTIRNSYKDLYPHISRIIPSWYAKEEDLRNL 309
>gi|429961945|gb|ELA41489.1| hypothetical protein VICG_01473 [Vittaforma corneae ATCC 50505]
Length = 312
Score = 236 bits (602), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 121/294 (41%), Positives = 182/294 (61%), Gaps = 6/294 (2%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLST 75
+IED+R+G +C CG+V+G+R+ID SEWR F + DPSRVG NP L+ L T
Sbjct: 23 IIEDHRSGYNVCGNCGVVLGNRIIDETSEWRNFEDSHKS-DPSRVGSASNPFLDSEQLDT 81
Query: 76 MIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADRINLTKTIVDRANNLF 135
MI G+G + +SK Q + M RAL N + I + +R N+ KTI DRA ++F
Sbjct: 82 MISAGKG---MNSHTLSKIQMKNYMRGPKRALKNGLNLIQAFCERSNICKTICDRAQHIF 138
Query: 136 KQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGRCFKLILKAL 195
K V K LKG++ + ACLYIAC+ E PRTFKEI ++ + K+EIGRC+KLI K +
Sbjct: 139 KMVESQKLLKGKNLEGSVGACLYIACKLENAPRTFKEISVITGVQKREIGRCYKLIAKDV 198
Query: 196 ETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMAS 255
+T+ + TGD +SRFC++L+L +Q+ A+ I++K E+ + G+SP S+AAA IY+
Sbjct: 199 DTN-NYAPTGDIVSRFCADLNLSLKIQRVASTISQKTYEIGALTGKSPDSIAAAIIYLVL 257
Query: 256 QASSDKRS-QKEIGDIAGVAEVTIRQSYKLMYPHASKLFPQDFVFHTPIHELPQ 308
+ + QK+I +AGV E+TI+ +YK + ++ P+D + I +L +
Sbjct: 258 NIFPEHKDLQKDIHLVAGVTEITIKNTYKDLLAFKDEIIPEDILDKRTIDKLSK 311
>gi|224135681|ref|XP_002322134.1| predicted protein [Populus trichocarpa]
gi|222869130|gb|EEF06261.1| predicted protein [Populus trichocarpa]
Length = 311
Score = 235 bits (600), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 142/299 (47%), Positives = 184/299 (61%), Gaps = 12/299 (4%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLST 75
++ D+ AGD ICSECGL++ +D SEWRTFSNE S DP+RVGGP NPLL LST
Sbjct: 15 IVFDHSAGDTICSECGLILEAHSVDETSEWRTFSNESSDHDPNRVGGPLNPLLADGGLST 74
Query: 76 MIGPGRGDAS-FDGFGMSKYQNRRTMNSSDRALLNAIREINSMADRINLTKTIVDRANNL 134
I G ++ + K+Q+R + DR + A + I +MADR+ L TI DRAN +
Sbjct: 75 TISKTNGGSNELLSCSLGKWQSRGA--NPDRNRIQAFKSIAAMADRLGLVTTIKDRANEI 132
Query: 135 FKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICA-VSKISKKEIGRCFKLILK 193
+K+V D K LKGR+ DAI +ACLYIACRQE RT KEIC+ V+ +KKEIGR + I+K
Sbjct: 133 YKKVEDQKPLKGRNQDAILAACLYIACRQENKARTVKEICSVVNGTTKKEIGRAKEFIVK 192
Query: 194 ALET------SVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVA 247
LE + I D++ RFCSNL + N KAA +K+ ELDI RSPIS+A
Sbjct: 193 HLEVEMGHSMEMGTIHAADYLRRFCSNLGMTNQAVKAAHEAVQKSEELDI--RRSPISIA 250
Query: 248 AAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKLFPQDFVFHTPIHEL 306
AA IY+ Q S DK+ K+I + VAE TI+ SYK + PH S++ P F I L
Sbjct: 251 AAVIYIIIQLSDDKKPLKDISVVTQVAEGTIKNSYKDLSPHLSQIIPSWFAKEEDIKNL 309
>gi|328858041|gb|EGG07155.1| hypothetical protein MELLADRAFT_43314 [Melampsora larici-populina
98AG31]
Length = 345
Score = 235 bits (600), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 128/292 (43%), Positives = 182/292 (62%), Gaps = 17/292 (5%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSD-LS 74
L+E++ +GD +C CGLV+GDR++D SEWRTF+ ++ G DPSRVGGP NPLLNG +
Sbjct: 37 LVEEFSSGDLVCGTCGLVIGDRIVDTRSEWRTFAGDE-GDDPSRVGGPSNPLLNGVETFE 95
Query: 75 TMIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADRINLTKTIVDRANNL 134
T+I G+ +++ R S ++++ A I M D I+L +T+ D A L
Sbjct: 96 TIISFKDGNTGV-ARDLNRAATRAATKSGEKSVAAAFLSIQDMCDTISLPRTVTDIAKQL 154
Query: 135 FKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGRCFKLILKA 194
F++ + K L+G+ DA+ +AC++IACRQ V R+FKE+ A++++ KK+IG+CFK + A
Sbjct: 155 FRRADEEKLLRGKQIDAVIAACIFIACRQSKVGRSFKEVVALTRVPKKQIGQCFKALSAA 214
Query: 195 LETSV-----DLIT-TG--------DFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPG 240
ETS L T TG D M+RFCS+L LP VQ A IA E+ I+ G
Sbjct: 215 FETSAVGGGGALNTDTGESSGAGAEDLMARFCSHLGLPYYVQSGAKRIAITQREIGILAG 274
Query: 241 RSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKL 292
RSPISVA A IY AS +S K+I IAGV+EVTI+ +YKL++P +L
Sbjct: 275 RSPISVAGACIYFASHLFGCGKSAKDIAKIAGVSEVTIKIAYKLLHPQREEL 326
>gi|310797049|gb|EFQ32510.1| transcription factor TFIIB [Glomerella graminicola M1.001]
Length = 351
Score = 234 bits (597), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 127/321 (39%), Positives = 193/321 (60%), Gaps = 28/321 (8%)
Query: 1 MNINKVC--CYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVD-P 57
+N+ +C C E+P L+E++ +GD +C CGLVVG+R+ID SEWRTF+N+ G D P
Sbjct: 22 LNMVVMCPDCKEYP-PHLVEEFSSGDMVCGSCGLVVGERIIDTRSEWRTFANDDQGNDDP 80
Query: 58 SRVGGPENPLLNGSDLSTMIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSM 117
SRVG NPLLNGS L T I G G D +++ QN+ + + ++L+ A +EI +
Sbjct: 81 SRVGDAVNPLLNGSQLETTIAFGDGR---DSKQLARLQNKSQNDKASKSLMQAYKEIGAF 137
Query: 118 ADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVS 177
D INL K + D A ++FK +D +KG+ +A+ + C++IACRQ GV RTF+EI V+
Sbjct: 138 CDSINLGKNVSDAAKHIFKLTYDHNFMKGKPQEAVIAGCIFIACRQTGVGRTFREIFQVT 197
Query: 178 KISKKEIGRCFKLILKALE-------------TSVD------LITTGDFMSRFCSNLSLP 218
+SKKEIGR FK + L+ +++D + D +RFCSNL+
Sbjct: 198 HVSKKEIGRVFKQLESFLQKIKEENPRGAGSLSNLDGYKASASTSAEDLCTRFCSNLNFR 257
Query: 219 NM--VQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEV 276
N ++ + +ARK + + GRSP+SVAAA IYMAS + R+ KEI +AGV++
Sbjct: 258 NAQKIENVSRALARKTSSVSELAGRSPLSVAAACIYMASHLMKEVRTSKEIASVAGVSDG 317
Query: 277 TIRQSYKLMYPHASKLFPQDF 297
TI+ +Y+ +Y +L +++
Sbjct: 318 TIKTAYRFLYQARDRLIEKEW 338
>gi|156062044|ref|XP_001596944.1| hypothetical protein SS1G_01136 [Sclerotinia sclerotiorum 1980]
gi|154696474|gb|EDN96212.1| hypothetical protein SS1G_01136 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 350
Score = 234 bits (596), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 133/324 (41%), Positives = 191/324 (58%), Gaps = 29/324 (8%)
Query: 1 MNINKVC--CYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVD-P 57
+N+ +C C E P L+E++ +GD +C CG+V+GDR++D SEWRTFSN+ G D P
Sbjct: 17 LNVTVMCKDCKEIP-PNLVEEFSSGDLVCDTCGVVIGDRIVDTRSEWRTFSNDDQGNDDP 75
Query: 58 SRVGGPENPLLNGSDLSTMIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSM 117
SRVG NPLLNGS LST I GD+S + + Q ++ + S +ALL A +EI +
Sbjct: 76 SRVGDAANPLLNGSQLSTTIA--FGDSSVRSRELYRAQGKQGTDKSTKALLAAYKEIGAH 133
Query: 118 ADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVS 177
D +N+ K + D A +LFK V D K KG+S +AI + C++IACRQ VPRTF+EI A++
Sbjct: 134 CDAVNIPKNVSDTAKHLFKLVDDAKAFKGKSQEAIIAGCIFIACRQCDVPRTFREIYALT 193
Query: 178 KISKKEIGRCFKLILK--------------------ALETSVDLITTG--DFMSRFCSNL 215
K+SKK+IGR FK + K + E+ +T D +R+CS L
Sbjct: 194 KVSKKDIGRTFKALEKFFASDSSAKKARAEAVGAPASTESYQTTTSTNAKDLCTRYCSQL 253
Query: 216 SLPNM-VQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVA 274
L + K + +A K + + GRSP+SVAAA IYMAS +S K+I +AGV+
Sbjct: 254 GLKSQQFVKVSQGLAEKVSTVGDLAGRSPLSVAAACIYMASALLGKPKSAKDISQVAGVS 313
Query: 275 EVTIRQSYKLMYPHASKLFPQDFV 298
+ TIR +YK +Y KL +++
Sbjct: 314 DGTIRTAYKYLYADREKLIEPEWI 337
>gi|85068255|ref|XP_962143.1| hypothetical protein NCU07289 [Neurospora crassa OR74A]
gi|28923740|gb|EAA32907.1| conserved hypothetical protein [Neurospora crassa OR74A]
Length = 348
Score = 234 bits (596), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 131/327 (40%), Positives = 192/327 (58%), Gaps = 35/327 (10%)
Query: 8 CYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVD-PSRVGGPENP 66
C E P L+E++ +GD +C CGLV+G+R+ID SEWRTFSN+ G D PSRVG N
Sbjct: 28 CKEDP-PHLVEEFSSGDMVCGSCGLVLGERIIDTRSEWRTFSNDDQGNDDPSRVGDGPNQ 86
Query: 67 LLNGSDLSTMIGPGRGDASFDGFG---MSKYQNRRTMNSSDRALLNAIREINSMADRINL 123
L++G L T I +FDG +S QN+ T + + + L+ A R+I + D IN
Sbjct: 87 LIDGDQLQTTI-------AFDGKNGKNLSHLQNKITQDKNSKQLMQAYRDIQGLTDSINA 139
Query: 124 TKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKE 183
+ + A +++K V D K LKG+S +AI + C++IACRQ GVPRTF+EI +++K+SKKE
Sbjct: 140 GTQVANAAKHIYKLVEDNKALKGKSQEAITAGCIFIACRQTGVPRTFREIYSLTKVSKKE 199
Query: 184 IGRCFKLILK----------ALETSVDLI----------TTGDFMSRFCSNLSLPN--MV 221
IGR FK + A+ TS+ T + +R+CSNL+ N V
Sbjct: 200 IGRVFKQLESFLQKIGGEEHAITTSIPTFNQQYQGKGSTTATELCARYCSNLNFRNSVAV 259
Query: 222 QKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQS 281
+ A +A K + + GRSP+SVAAA IYMAS ++ R+ KEI +AGV++ T++ +
Sbjct: 260 EDVARQLADKTSTISELAGRSPLSVAAACIYMASHIRNESRTSKEIATVAGVSDGTVKTA 319
Query: 282 YKLMYPHASKLFPQDFVFHTP-IHELP 307
Y+L+Y KL + F P + +LP
Sbjct: 320 YRLLYNKKDKLLEEIFPEGVPNLDKLP 346
>gi|345571434|gb|EGX54248.1| hypothetical protein AOL_s00004g281 [Arthrobotrys oligospora ATCC
24927]
Length = 452
Score = 233 bits (595), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 133/324 (41%), Positives = 185/324 (57%), Gaps = 28/324 (8%)
Query: 1 MNINKVC--CYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVD-P 57
+NI+ +C C E P L+E++ +GD +C CGLV+GDR ID SEWRTFSN+ G D P
Sbjct: 31 LNIHVICKDCKEFP-PNLVEEFSSGDIVCGSCGLVLGDRTIDTRSEWRTFSNDDQGNDDP 89
Query: 58 SRVGGPENPLLNGSDLSTMIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSM 117
SRVG NPLLNG+ L T I G S + + QN+ T + S ++LL A +EI +
Sbjct: 90 SRVGDSANPLLNGNQLDTGISFSDG-GSGRARDLHRAQNKVTHDKSTKSLLAAYKEIGAF 148
Query: 118 ADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVS 177
D NL K + D A L+K V D K KG+ + I + C++IACR+ VPRTF+EI A++
Sbjct: 149 CDSTNLQKNVADTAKQLYKSVDDAKAFKGKPQEVIIAGCIFIACRKCNVPRTFREIFAIT 208
Query: 178 KISKKEIGRCFKLILKAL----ETSVDLITTG-------------------DFMSRFCSN 214
K+ KKEIGR FK + K E +V I +G D M RFC+N
Sbjct: 209 KVPKKEIGRVFKALEKFFSQQGEATVAEIVSGGGIANENAGYTSTTSTKAHDLMIRFCNN 268
Query: 215 LSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVA 274
L L + + + +A +A + + GRSPIS AAA IYM S +S KEI +AGV+
Sbjct: 269 LGLTHNLIYISQELAERAAQKGTLAGRSPISSAAACIYMISHLMRQPKSAKEISAVAGVS 328
Query: 275 EVTIRQSYKLMYPHASKLFPQDFV 298
+ TI+ +YKL+Y + L ++
Sbjct: 329 DGTIKTAYKLLYNERTALVDPKWI 352
>gi|414590060|tpg|DAA40631.1| TPA: hypothetical protein ZEAMMB73_839050 [Zea mays]
Length = 330
Score = 233 bits (595), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 127/266 (47%), Positives = 168/266 (63%), Gaps = 14/266 (5%)
Query: 8 CYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPL 67
C +H + D+ AGD +C+ECGLV+ +D SEWRTF+NE + DP RVGGP NPL
Sbjct: 9 CKKHTEVAF--DHSAGDTVCTECGLVLEAHSVDETSEWRTFANESNDNDPVRVGGPSNPL 66
Query: 68 LNGSDLSTMIG-PGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADRINLTKT 126
L LST+I P F + ++QNR + + DR+L+ A R I +MADR+ L T
Sbjct: 67 LTDGGLSTVIAKPNGAQGDFLSSSLGRWQNRGS--NPDRSLILAFRTIANMADRLGLVAT 124
Query: 127 IVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSK-ISKKEIG 185
I DRAN +FK++ D K+++GR+ DAI +ACLYIACRQE PRT KEIC+V+ +KKEIG
Sbjct: 125 IKDRANEIFKKIEDLKSIRGRNQDAILAACLYIACRQEDRPRTVKEICSVANGATKKEIG 184
Query: 186 RCFKLILKALET------SVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVP 239
R + I+K LE + I GDF+ RFCS L + N AA +++ ELDI
Sbjct: 185 RAKEFIVKQLEVEMGQSMEMGTIHAGDFLRRFCSTLGMTNQAVNAAKEAVQRSEELDI-- 242
Query: 240 GRSPISVAAAAIYMASQASSDKRSQK 265
RSPIS+AAA IYM +Q S DK+ K
Sbjct: 243 RRSPISIAAAVIYMITQLSEDKKPLK 268
>gi|296420282|ref|XP_002839704.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295635898|emb|CAZ83895.1| unnamed protein product [Tuber melanosporum]
Length = 346
Score = 233 bits (593), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 133/323 (41%), Positives = 185/323 (57%), Gaps = 30/323 (9%)
Query: 2 NINKVC--CYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNE-KSGVDPS 58
N++ +C C E P A ++E++ +GD +C CGLV+GDR++D SEWRTFSN+ ++G DPS
Sbjct: 15 NVSVMCPDCREVP-ANIVEEFSSGDMVCGSCGLVLGDRIVDTRSEWRTFSNDDQAGDDPS 73
Query: 59 RVGGPENPLLNGSDLSTMIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMA 118
RVG NP LNG+ L T I G A G + + QN+ + S + LL A +EI +
Sbjct: 74 RVGDAANPFLNGAQLETTISYTPGGA---GRELHRAQNKTAGDKSTKGLLAAYKEIGAFC 130
Query: 119 DRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSK 178
D IN+ K + D A LFK V D K KG+ +AI + C++IACRQ VPRTF+EI A++K
Sbjct: 131 DSINIQKVVSDAAKQLFKIVDDHKAFKGKPQEAIIAGCIFIACRQCQVPRTFREIFALTK 190
Query: 179 ISKKEIGRCFKLILKALETS----VDLITTG-------------------DFMSRFCSNL 215
+ KKEIGR FK + K +D IT + M R+C+NL
Sbjct: 191 VPKKEIGRVFKALEKFFAAQDSKKMDEITKSGGIVDDSQQYKTTSSTKATELMIRYCNNL 250
Query: 216 SLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAE 275
+L A +A +A + + GRSPIS AAA IYM S ++ KEI IAGV++
Sbjct: 251 NLTQNCTTIAQELADRAATIGTLAGRSPISSAAACIYMVSYLMKQPKTAKEISTIAGVSD 310
Query: 276 VTIRQSYKLMYPHASKLFPQDFV 298
TIR +YK +Y +KL +V
Sbjct: 311 GTIRNAYKHLYTDRNKLIDPKWV 333
>gi|336270348|ref|XP_003349933.1| hypothetical protein SMAC_00825 [Sordaria macrospora k-hell]
gi|380095322|emb|CCC06795.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 348
Score = 232 bits (592), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 130/327 (39%), Positives = 193/327 (59%), Gaps = 35/327 (10%)
Query: 8 CYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVD-PSRVGGPENP 66
C E P L+E++ +GD +C +CGLV+G+R+ID SEWRTFSN+ G D PSRVG N
Sbjct: 28 CKEDP-PHLVEEFSSGDMVCGDCGLVLGERIIDTRSEWRTFSNDDQGNDDPSRVGDGPNQ 86
Query: 67 LLNGSDLSTMIGPGRGDASFDGFG---MSKYQNRRTMNSSDRALLNAIREINSMADRINL 123
L++G L T I +FDG +S QN+ T + + + L+ A R+I + D IN
Sbjct: 87 LIDGDQLQTTI-------AFDGKNGKNLSHLQNKITQDKNSKQLMQAYRDIQGLTDSINA 139
Query: 124 TKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKE 183
+ + A +++K V D K LKG+S +AI + C++IACRQ GVPRTF+EI +++K+SKKE
Sbjct: 140 GTQVANAAKHIYKLVEDNKALKGKSQEAITAGCIFIACRQTGVPRTFREIYSLTKVSKKE 199
Query: 184 IGRCFKLILK----------ALETSVDLI----------TTGDFMSRFCSNLSLPN--MV 221
IGR FK + A+ TS+ T + +R+CSNL+ N V
Sbjct: 200 IGRVFKQLESFLQKIGGEEHAITTSIPTFNQQYQGKGSTTATELCARYCSNLNFRNSVAV 259
Query: 222 QKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQS 281
+ A +A K + + GRSP+SVAAA IYMAS ++ R+ KEI +AGV++ T++ +
Sbjct: 260 EDVARQLADKTSTISELAGRSPLSVAAACIYMASHIRNESRTSKEIAAVAGVSDGTVKTA 319
Query: 282 YKLMYPHASKLFPQDFVFHTP-IHELP 307
Y+L++ KL + F P + +LP
Sbjct: 320 YRLLHNKKDKLLEEIFPEGVPNLDKLP 346
>gi|380487909|emb|CCF37735.1| transcription factor TFIIB [Colletotrichum higginsianum]
Length = 351
Score = 232 bits (591), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 126/321 (39%), Positives = 192/321 (59%), Gaps = 28/321 (8%)
Query: 1 MNINKVC--CYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVD-P 57
+N+ +C C E+P L+E++ +GD +C CGLVVG+R+ID SEWRTF+N+ G D P
Sbjct: 22 LNMVVMCPDCKEYP-PHLVEEFSSGDMVCGSCGLVVGERIIDTRSEWRTFANDDQGNDDP 80
Query: 58 SRVGGPENPLLNGSDLSTMIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSM 117
SRVG NPLLNGS L T I G G D +++ QN+ + + ++L+ A +EI +
Sbjct: 81 SRVGDAVNPLLNGSQLETTIAFGDGR---DSKQLARLQNKSQNDKASKSLMQAYKEIGAF 137
Query: 118 ADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVS 177
D INL K + D A ++FK +D +KG+ +A+ + C++IACRQ GV RTF+EI V+
Sbjct: 138 CDSINLGKNVSDAAKHIFKLTYDHNFMKGKPQEAVIAGCIFIACRQTGVGRTFREIFQVT 197
Query: 178 KISKKEIGRCFKLILKALE-------------TSVD------LITTGDFMSRFCSNLSLP 218
+SKKEIGR FK + L+ +++D + D +RFCSNL+
Sbjct: 198 HVSKKEIGRVFKQLESFLQKIKEENPRGAGSLSNLDGYKASASTSAEDLCTRFCSNLNFR 257
Query: 219 NM--VQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEV 276
N ++ + +ARK + + GRSP+SVA A IYMAS + R+ KEI +AGV++
Sbjct: 258 NAQKIENVSRALARKTSSVSELAGRSPLSVAXACIYMASHLMKEVRTSKEIASVAGVSDG 317
Query: 277 TIRQSYKLMYPHASKLFPQDF 297
TI+ +Y+ +Y +L +++
Sbjct: 318 TIKTAYRFLYQARDRLIEKEW 338
>gi|406859255|gb|EKD12323.1| transcription factor TFIIB [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 352
Score = 232 bits (591), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 132/322 (40%), Positives = 194/322 (60%), Gaps = 28/322 (8%)
Query: 1 MNINKVC--CYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVD-P 57
+N+ +C C E P L+E++ +GD +C CGLV+GDR++D SEWRTF+N+ G D P
Sbjct: 19 LNLTMICKDCKEVP-PNLVEEFSSGDMVCGSCGLVLGDRIVDTRSEWRTFANDDQGNDDP 77
Query: 58 SRVGGPENPLLNGSDLSTMIGPGRGDA-SFDGFGMSKYQNRRTMNSSDRALLNAIREINS 116
SRVG NPLLNGS L+T I G++ S D + + QN+ + + S ++LL A +EI +
Sbjct: 78 SRVGDGANPLLNGSQLTTSISFQDGNSRSRD---LMRTQNKSSNDKSTKSLLAAYKEIGA 134
Query: 117 MADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAV 176
D +NL+K++ D A LFK+V D K KG+S +AI + C++IACRQ VPRTF+EI A+
Sbjct: 135 HCDAVNLSKSVSDCAKLLFKKVEDAKAFKGKSQEAIIAGCIFIACRQCAVPRTFREIYAL 194
Query: 177 SKISKKEIGRCFKLILK----------------ALETSVDLITTG---DFMSRFCSNLSL 217
+K+SKK+IGR FK + K + E T+ D R+CS L L
Sbjct: 195 TKVSKKDIGRTFKALEKFFAQNNGGAQKVVAGVSAEDPYQATTSTNAQDLCVRYCSQLGL 254
Query: 218 PNM-VQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEV 276
P M + + +A K + + GRSP+S+AAA I+MAS + ++ KEI IAGV++
Sbjct: 255 PGMKFVRVSQGLAEKMSTVGDLAGRSPLSIAAACIFMASALLGNPKTPKEISQIAGVSDG 314
Query: 277 TIRQSYKLMYPHASKLFPQDFV 298
TIR +YK +Y +L ++
Sbjct: 315 TIRTAYKYLYQERERLIEPAWI 336
>gi|336471507|gb|EGO59668.1| hypothetical protein NEUTE1DRAFT_39488 [Neurospora tetrasperma FGSC
2508]
gi|350292608|gb|EGZ73803.1| cyclin-like protein [Neurospora tetrasperma FGSC 2509]
Length = 348
Score = 232 bits (591), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 130/327 (39%), Positives = 192/327 (58%), Gaps = 35/327 (10%)
Query: 8 CYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVD-PSRVGGPENP 66
C E P L+E++ +GD +C CGLV+G+R+ID SEWRTFSN+ G D PSRVG N
Sbjct: 28 CKEDP-PHLVEEFSSGDMVCGSCGLVLGERIIDTRSEWRTFSNDDQGNDDPSRVGDGPNQ 86
Query: 67 LLNGSDLSTMIGPGRGDASFDGFG---MSKYQNRRTMNSSDRALLNAIREINSMADRINL 123
L++G L T I +FDG +S QN+ T + + + L+ A R+I + D IN
Sbjct: 87 LIDGDQLQTTI-------AFDGKNGKNLSHLQNKITQDKNSKQLMQAYRDIQGLTDSINA 139
Query: 124 TKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKE 183
+ + A +++K V D K LKG+S +AI + C++IACRQ GVPRTF+EI +++K+SKKE
Sbjct: 140 GTQVANAAKHIYKLVEDNKALKGKSQEAITAGCIFIACRQTGVPRTFREIYSLTKVSKKE 199
Query: 184 IGRCFKLILK----------ALETSVDLI----------TTGDFMSRFCSNLSLPN--MV 221
IGR FK + A+ TS+ T + +R+CSNL+ N V
Sbjct: 200 IGRVFKQLESFLQKIGGEEHAITTSIPTFNQQYQGKGSTTATELCARYCSNLNFRNSVAV 259
Query: 222 QKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQS 281
+ A +A K + + GRSP+SVAAA IYMAS ++ R+ K+I +AGV++ T++ +
Sbjct: 260 EDVARQLADKTSTISELAGRSPLSVAAACIYMASHIRNESRTSKDIAAVAGVSDGTVKTA 319
Query: 282 YKLMYPHASKLFPQDFVFHTP-IHELP 307
Y+L+Y KL + F P + +LP
Sbjct: 320 YRLLYNKKDKLLEEIFPEGVPNLDKLP 346
>gi|429860053|gb|ELA34805.1| transcription initiation protein [Colletotrichum gloeosporioides
Nara gc5]
Length = 555
Score = 230 bits (587), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 125/323 (38%), Positives = 194/323 (60%), Gaps = 28/323 (8%)
Query: 1 MNINKVC--CYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVD-P 57
+N+ +C C E+P L+E++ +GD +C CGLVVG+R+ID SEWRTF+N+ G D P
Sbjct: 226 LNMVVMCPDCKEYPPN-LVEEFSSGDMVCGSCGLVVGERIIDTRSEWRTFANDDQGNDDP 284
Query: 58 SRVGGPENPLLNGSDLSTMIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSM 117
SRVG NPLLNGS L T I G G D +++ QN+ + + ++L+ A +EI +
Sbjct: 285 SRVGDAVNPLLNGSQLETTIAFGDGR---DSKQLARLQNKSQNDKASKSLMQAYKEIGAF 341
Query: 118 ADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVS 177
D INL K + D A ++FK +D +KG+ +A+ + C++IACRQ GV RTF+EI V+
Sbjct: 342 CDSINLGKNVSDAAKHIFKLTYDHNFMKGKPQEAVIAGCIFIACRQTGVGRTFREIFQVT 401
Query: 178 KISKKEIGRCFKLILKALE-------------TSVD------LITTGDFMSRFCSNLSLP 218
+SKKEIGR FK + L+ +++D + D +RFCSNL+
Sbjct: 402 HVSKKEIGRVFKQLESFLQKIKEENPRGAGSLSNLDGYKASASTSAEDLCTRFCSNLNFR 461
Query: 219 NM--VQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEV 276
N ++ + +ARK + + GRSP+SVAAA IYMA+ ++ ++ K I +AGV++
Sbjct: 462 NAQKIENVSRALARKTSSVSELAGRSPLSVAAACIYMAAHLMAEPKTSKAIAGVAGVSDG 521
Query: 277 TIRQSYKLMYPHASKLFPQDFVF 299
TI+ +Y+ +Y KL +++ +
Sbjct: 522 TIKTAYRFLYNAKGKLVEKEWGY 544
>gi|328771004|gb|EGF81045.1| hypothetical protein BATDEDRAFT_35027 [Batrachochytrium
dendrobatidis JAM81]
Length = 335
Score = 230 bits (587), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 128/313 (40%), Positives = 192/313 (61%), Gaps = 17/313 (5%)
Query: 5 KVCCYEHPDAP--LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSN--EKSGVDPSRV 60
++ C + DA ++ED+ AGD IC CGL++G+R+ID SEWRTFSN + SG DPSRV
Sbjct: 29 RLICRDCKDAVPNIVEDFSAGDLICGNCGLILGNRIIDTRSEWRTFSNSDDNSG-DPSRV 87
Query: 61 GGPENPLL--NGSDLSTMIGPGRGDASFDGFGMSKYQNRRTM----NSSDRALLNAIREI 114
G +P+L G+ ST+IG G G G S+ +R + + ALL A + I
Sbjct: 88 GAASDPILGSKGTIDSTIIGVRDG-----GTGRSRELHRAHLKVIGQKGEVALLQAFKVI 142
Query: 115 NSMADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEIC 174
+M +RI+L+K ++D A LFK+ D + LK + +AI +ACLYIACR+ V RTF+EIC
Sbjct: 143 QAMGERISLSKIVIDSAKQLFKKADDERLLKSKPTEAIIAACLYIACREHSVTRTFREIC 202
Query: 175 AVSKISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVE 234
A+SK+SKKEIGRC+K + +E V I+ ++SRF S++ + V+KA +A + VE
Sbjct: 203 ALSKVSKKEIGRCYKALQPNMEHPVQQISLDAYISRFSSSIDIKADVRKATVLVADRIVE 262
Query: 235 LDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKLFP 294
L + G+SPI++ A+ +Y S S+D + K I ++AG E T++ +YKL+ +
Sbjct: 263 LGTLAGKSPITLVASCLYFVSCLSTDPKPAKLIAEVAGCTESTLKNAYKLLL-EVKDIIG 321
Query: 295 QDFVFHTPIHELP 307
+D +H LP
Sbjct: 322 RDLNLPHGLHTLP 334
>gi|340960457|gb|EGS21638.1| hypothetical protein CTHT_0035020 [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 352
Score = 230 bits (586), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 130/326 (39%), Positives = 191/326 (58%), Gaps = 33/326 (10%)
Query: 8 CYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVD-PSRVGGPENP 66
C E P LIE++ +GD +C CGLVVGDR+ID SEWRTFSN+ G D PSRVG N
Sbjct: 32 CKEFP-PNLIEEFSSGDMVCGSCGLVVGDRIIDTRSEWRTFSNDDQGNDDPSRVGDAPNL 90
Query: 67 LLNGSDLSTMIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADRINLTKT 126
+++G L T I G G + +S QN+ + + +ALL A R+I S+ D IN
Sbjct: 91 MIDGDQLQTTIAYGEGK---NARNLSHLQNKVNQDKASKALLQAYRDIQSLTDSINTGSQ 147
Query: 127 IVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGR 186
+ + A +++K V D K LKG+S +AI + C++IACRQ GVPRTF+EI ++K+SKKEIGR
Sbjct: 148 VANAAKHIYKLVEDNKALKGKSQEAIIAGCIFIACRQMGVPRTFREIYGLTKVSKKEIGR 207
Query: 187 CFKLILKAL----------ETSV--------DLITTGDFMSRFCSNLSLPNM--VQKAAT 226
FK + L +TS+ + + +R+CSNL + V+ A
Sbjct: 208 VFKQLEAFLQKMGGEEQVAQTSIFTAQYQAKGSTSAPELCARYCSNLRFRHAVRVENIAR 267
Query: 227 HIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMY 286
+A K+ ++ + GRSP+SVAAA IYMAS + + R+ KEI +AGV++ T++ +Y+ +Y
Sbjct: 268 RLAEKSAKVTDLAGRSPLSVAAACIYMASHLAGEPRTSKEISVVAGVSDGTVKTAYRYLY 327
Query: 287 PH-----ASKLFPQDFVFHTPIHELP 307
++FP+ P +LP
Sbjct: 328 NSKDVILTEEVFPEGV---PPTDKLP 350
>gi|300708774|ref|XP_002996560.1| hypothetical protein NCER_100338 [Nosema ceranae BRL01]
gi|239605871|gb|EEQ82889.1| hypothetical protein NCER_100338 [Nosema ceranae BRL01]
Length = 333
Score = 230 bits (586), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 122/293 (41%), Positives = 177/293 (60%), Gaps = 6/293 (2%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLST 75
+IEDYR G +C CG VVG+R+ID SEWR+FS+ DP R G NP L+ L T
Sbjct: 44 IIEDYRNGYNVCGRCGCVVGNRIIDESSEWRSFSDSNKA-DPCRTGSVSNPFLDTEQLDT 102
Query: 76 MIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADRINLTKTIVDRANNLF 135
MI G +S++ + K Q + M +R+L + I I + +R N+TKT++DRA +F
Sbjct: 103 MISSVPGTSSYN---LQKIQLKTAMRGPERSLKHGINLITAFCERANITKTVIDRACLIF 159
Query: 136 KQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGRCFKLILKAL 195
K V D K LKG++ + + AC+YIACR E PRTFKE+ ++ + KKEIG+ FKLI +
Sbjct: 160 KIVDDKKLLKGKNIEGVVGACIYIACRLENCPRTFKEVSLITSVQKKEIGKSFKLISPHV 219
Query: 196 ETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMAS 255
E ++ +++T D ++RFCS+L L +Q+ A I+ K E I+ G+SP S+AAA IYM +
Sbjct: 220 E-NLTVVSTKDIVARFCSDLRLNIKIQRLAFAISAKVQEAGILAGKSPDSIAAAIIYMVT 278
Query: 256 QASSDKRS-QKEIGDIAGVAEVTIRQSYKLMYPHASKLFPQDFVFHTPIHELP 307
+ R QK+I + V EVTI+ +YK + + + P D V I LP
Sbjct: 279 YLVPEGRKVQKDIQYVTNVTEVTIKNTYKELAIFKNVIIPTDIVSQEAIDNLP 331
>gi|388583858|gb|EIM24159.1| TFIIB-domain-containing protein [Wallemia sebi CBS 633.66]
Length = 336
Score = 229 bits (585), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 134/303 (44%), Positives = 197/303 (65%), Gaps = 27/303 (8%)
Query: 5 KVCCYE--HPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGG 62
K+ C E P+ ++E++ +GD +C +CGLV+GD+V+D SEWRTF+N++ G DPSRVG
Sbjct: 17 KLICPECQIPNPNVVEEFSSGDLVCGDCGLVLGDKVVDTRSEWRTFANDE-GDDPSRVGA 75
Query: 63 PENPLLNGSD-LSTMIGPGRGDASFDGFGMSKYQNRRTMNSS----DRALLNAIREINSM 117
NPLL+G D TMI G+ G+S+ R T SS +R LLNA R+I+SM
Sbjct: 76 ANNPLLDGVDEFETMISSRDGNT-----GISRELQRATAKSSHGRSERGLLNAFRDISSM 130
Query: 118 ADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVS 177
AD+I+L ++I D A L+K+V + K L+G+S DAI +AC++IACRQ GVPRTFKE+ ++
Sbjct: 131 ADQISLPRSIADIAKQLYKRVDEEKLLRGKSTDAIIAACIFIACRQAGVPRTFKEVWGLT 190
Query: 178 KISKKEIGRCFKLILKALETSVDLITTG--------------DFMSRFCSNLSLPNMVQK 223
++ KK IG+CFK++ +A ++ +T G D M+R+C++L+LP +Q
Sbjct: 191 RVPKKVIGQCFKVLERAFGSNSPSMTPGVDTPTLNNIQSGPEDLMARYCNHLNLPVWLQS 250
Query: 224 AATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
A +A A E ++ GRSPI+VAA IY AS +S EIG+IAGV + TIR +YK
Sbjct: 251 GAVDVAIAAREHGVLAGRSPITVAATCIYFASALFGHPKSASEIGNIAGVGDSTIRSAYK 310
Query: 284 LMY 286
+++
Sbjct: 311 ILF 313
>gi|269862513|ref|XP_002650868.1| transcription initiation factor IIB [Enterocytozoon bieneusi H348]
gi|220065496|gb|EED43190.1| transcription initiation factor IIB [Enterocytozoon bieneusi H348]
Length = 311
Score = 229 bits (583), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 123/306 (40%), Positives = 187/306 (61%), Gaps = 11/306 (3%)
Query: 2 NINKVCCYEHPDA-PLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRV 60
N+NK C E + +IEDYR G +C +CG V ++++D G EWR FS+ G DPSRV
Sbjct: 10 NLNK--CNECGEVNSVIEDYRNGFNVCGKCGCVFREKIVDEGGEWRNFSDSTKG-DPSRV 66
Query: 61 GGPENPLLNGSDLSTMIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADR 120
G NP L+ L T+I G G S++ +++ Q + M DR L N + I S +R
Sbjct: 67 GSAINPFLDVEQLDTVISAGSGANSYN---LNRIQMKNYMRGPDRVLKNGFKLIQSFCER 123
Query: 121 INLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKIS 180
LT+TI+D+A +FK V K LKG++ + AC+YIAC+ EG PRTFKEI ++ +
Sbjct: 124 GFLTQTIIDKAQAIFKDVESKKLLKGKNLEGCIGACIYIACKTEGCPRTFKEISVITVVP 183
Query: 181 KKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPG 240
K+EIG+C+KLI K ++T+ ++ T D + RFCS+L+L +Q A +IA+K ++ + G
Sbjct: 184 KREIGKCYKLISKEIDTT-GIMATADIVGRFCSDLNLNAKIQNTARYIAKKVQDIGCLAG 242
Query: 241 RSPISVAAAAIYMASQASSDKRS-QKEIGDIAGVAEVTIRQSYKLMYPHASKLFPQDFVF 299
RSP S+A+A IY+ D QK+I + V +VTIR +YK + P+ ++ P++F
Sbjct: 243 RSPDSIASAIIYLTLCLYPDFLFLQKDIQYVTNVTDVTIRNTYKDLLPYKKEIIPEEFT- 301
Query: 300 HTPIHE 305
T ++E
Sbjct: 302 -TAVNE 306
>gi|47156969|gb|AAT12348.1| transcription initiation factor TFIIB [Antonospora locustae]
Length = 306
Score = 229 bits (583), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 125/300 (41%), Positives = 185/300 (61%), Gaps = 7/300 (2%)
Query: 1 MNINKVCCYEHPDA-PLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSR 59
M K+ C + ++ +IEDY+AG +CS CG V+G+R+ID GSEWR FS + + + SR
Sbjct: 1 MRFQKLACKDCGESRNIIEDYKAGYNVCSNCGCVIGNRIIDEGSEWRNFS-DANAPNLSR 59
Query: 60 VGGPENPLLNGSDLSTMIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMAD 119
VG NPLL+ T+I R +SF G +SK Q R +M ++AL+N I+++ D
Sbjct: 60 VGSANNPLLDAETYDTIISTER--SSF-GVNLSKTQMRSSMRGPEQALINGFNLISALCD 116
Query: 120 RINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKI 179
R N+TKTI DRA FK V + K K +S+ +AC+YIACRQEG PRTFKEI ++ +
Sbjct: 117 RANMTKTICDRAKFNFKAVEEKKIAKSKSHKGTVAACIYIACRQEGCPRTFKEISVLTAV 176
Query: 180 SKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVP 239
+K+IGR +K+I LE V ++ D +SRFCSNL L + +K A IA+ LDI+
Sbjct: 177 PRKDIGRAYKIIYPHLEKFV-AVSVKDIVSRFCSNLDLGHDAEKLAVAIAQNVQRLDILT 235
Query: 240 GRSPISVAAAAIYMASQASSDKRS-QKEIGDIAGVAEVTIRQSYKLMYPHASKLFPQDFV 298
G+S S+AAA +Y+ + S +S QK + + + V +VTI+ YK + H ++ P + +
Sbjct: 236 GKSTDSIAAAIVYLVTNVFSQHKSMQKFLQNTSNVTDVTIKNVYKELVLHKEEVIPSEAI 295
>gi|168012200|ref|XP_001758790.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162689927|gb|EDQ76296.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 312
Score = 224 bits (572), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 136/313 (43%), Positives = 186/313 (59%), Gaps = 14/313 (4%)
Query: 6 VCCYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPEN 65
VC ++ED AGD +C+ECGLV+ R +D EWR F++ S +D R+GGP N
Sbjct: 5 VCSECRKVTQVVEDRAAGDVLCAECGLVLEQRSVDETREWRWFAD-SSSIDRERIGGPSN 63
Query: 66 PLLNGSDLSTMIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADRINLTK 125
PLL LS+ I G A D Q++ + D++ + A R I +MADR+ L
Sbjct: 64 PLLADGGLSSFISKSNG-AQGDVMSSILRQSKLGL-IPDQSRIIAFRSIGNMADRLGLVS 121
Query: 126 TIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFK-EICAVSK-ISKKE 183
TI DRAN ++K V D K + RS++AI ++CLYIACRQE PRTFK EIC+VS SK +
Sbjct: 122 TIKDRANEIYKNVVDLKLTRNRSHEAILASCLYIACRQEDKPRTFKEEICSVSNGASKTD 181
Query: 184 IGRCFKLILKALETSVDL------ITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDI 237
GR K ++K +E + + I GDF RFCS+L + +A T +K+ L
Sbjct: 182 TGRITKKLVKQIEKGMGISMEMGTIHAGDFSRRFCSHLDMEKNEVRAITETVKKSEML-- 239
Query: 238 VPGRSPISVAAAAIYMASQASS-DKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKLFPQD 296
V GRSP+SVAAAAI+M SQ + DK+ K+I +AGV E +IR Y+ +YPHASKL P+
Sbjct: 240 VIGRSPLSVAAAAIFMISQLNEKDKKELKDISRVAGVNEESIRFMYRELYPHASKLIPEW 299
Query: 297 FVFHTPIHELPQL 309
F+ + LP L
Sbjct: 300 FLKDVDLKHLPAL 312
>gi|346978629|gb|EGY22081.1| transcription initiation factor IIB [Verticillium dahliae VdLs.17]
Length = 352
Score = 224 bits (570), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 126/331 (38%), Positives = 189/331 (57%), Gaps = 28/331 (8%)
Query: 1 MNINKVC--CYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVD-P 57
+NI C C E P L+E++ +GD +C CGLVVG+R+ID SEWRTF+N+ G D P
Sbjct: 24 LNIIVECPDCREQP-PNLVEEFSSGDMVCGSCGLVVGERIIDTRSEWRTFANDDQGNDDP 82
Query: 58 SRVGGPENPLLNGSDLSTMIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSM 117
SRVG NPLL+G+ L T I G D +++ QN+ + + +A+ +A REI++
Sbjct: 83 SRVGDAGNPLLDGAQLETSIAFSEGR---DHKNLARIQNKSQTDKNTKAIGSAFREISAF 139
Query: 118 ADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVS 177
D INL K + D A +++K HD +KG+ +A+ + C++IACRQ GV RTF+EI V+
Sbjct: 140 TDSINLGKNVADGAKHIYKLCHDHSFMKGKPQEALVAGCIFIACRQAGVGRTFREIYQVT 199
Query: 178 KISKKEIGRCFKLILKALETSVDLITTG------------------DFMSRFCSNLSL-- 217
+SKKEIGR FK + L+ + G D +RF S L
Sbjct: 200 NVSKKEIGRVFKALESFLQKIKETNPGGNAIQDLSGYKASTSTNAEDLCTRFTSQLPFRQ 259
Query: 218 PNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVT 277
++ + +ARK V + + GRSP+SV+AA IYMAS + ++ K+I +AGV++ T
Sbjct: 260 SQKIENVSRALARKTVSVSELAGRSPLSVSAACIYMASHLMEEAKTSKDIAAVAGVSDGT 319
Query: 278 IRQSYKLMYPHASKLFPQDF-VFHTPIHELP 307
I+ +YK +Y +L +++ V I LP
Sbjct: 320 IKTAYKFLYQARERLIEKEWGVSQKAIDSLP 350
>gi|302412198|ref|XP_003003932.1| transcription initiation factor IIB [Verticillium albo-atrum
VaMs.102]
gi|261357837|gb|EEY20265.1| transcription initiation factor IIB [Verticillium albo-atrum
VaMs.102]
Length = 352
Score = 223 bits (569), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 126/331 (38%), Positives = 189/331 (57%), Gaps = 28/331 (8%)
Query: 1 MNINKVC--CYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVD-P 57
+NI C C E P L+E++ +GD +C CGLVVG+R+ID SEWRTF+N+ G D P
Sbjct: 24 LNIIVECPDCREQP-PNLVEEFSSGDMVCGSCGLVVGERIIDTRSEWRTFANDDQGNDDP 82
Query: 58 SRVGGPENPLLNGSDLSTMIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSM 117
SRVG NPLL+G+ L T I G D +++ QN+ + + +A+ +A REI++
Sbjct: 83 SRVGDAGNPLLDGAQLETSIAFSEGR---DHKNLARIQNKSQTDKNTKAIGSAFREISAF 139
Query: 118 ADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVS 177
D INL K + D A +++K HD +KG+ +A+ + C++IACRQ GV RTF+EI V+
Sbjct: 140 TDSINLGKNVADGAKHIYKLCHDHSFMKGKPQEALVAGCIFIACRQAGVGRTFREIYQVT 199
Query: 178 KISKKEIGRCFKLILKALETSVDLITTG------------------DFMSRFCSNLSL-- 217
+SKKEIGR FK + L+ + G D +RF S L
Sbjct: 200 NVSKKEIGRVFKALESFLQKIKETNPGGNAIQDLSGYKASTSTNAEDLCTRFTSQLPFRQ 259
Query: 218 PNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVT 277
++ + +ARK V + + GRSP+SV+AA IYMAS + ++ K+I +AGV++ T
Sbjct: 260 SQKIENVSRALARKTVSVSELAGRSPLSVSAACIYMASHLMEEPKTSKDIAAVAGVSDGT 319
Query: 278 IRQSYKLMYPHASKLFPQDF-VFHTPIHELP 307
I+ +YK +Y +L +++ V I LP
Sbjct: 320 IKTAYKFLYQARERLIEKEWGVSQKAIDSLP 350
>gi|440491617|gb|ELQ74241.1| Transcription initiation factor TFIIB [Trachipleistophora hominis]
Length = 305
Score = 223 bits (567), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 116/289 (40%), Positives = 177/289 (61%), Gaps = 7/289 (2%)
Query: 11 HPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNG 70
D + +D + G +C+ CG ++ + +ID +EWRTF + S DPSRVGGP NPLL
Sbjct: 16 QSDQYITDDTKTGAVLCTNCGCIIENTLIDEKTEWRTFDD--SANDPSRVGGPNNPLLGT 73
Query: 71 SDLSTMIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADRINLTKTIVDR 130
L TMI + + +++ Q + TM +R L+N I++ DR N++KTI DR
Sbjct: 74 EPLDTMIA---NIGNLHSYTLNRTQMKSTMRGPERQLINGFNLISAYCDRSNISKTISDR 130
Query: 131 ANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGRCFKL 190
A +FK+V + K LKG++ + + +AC+YIACRQE PRTFKE+ ++ + KKEIGR FKL
Sbjct: 131 AKLIFKRVDEKKILKGKNLEGVVAACIYIACRQEQSPRTFKEVSVLTAVPKKEIGRSFKL 190
Query: 191 ILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAA 250
I +E + +TT D ++RFCS+L+L VQK A I++ +E + G+SP SVAAA
Sbjct: 191 IFPHIE-KLQCVTTDDIVARFCSDLNLGIDVQKIAVQISKNVIEKGCMAGKSPDSVAAAV 249
Query: 251 IYMASQASSD-KRSQKEIGDIAGVAEVTIRQSYKLMYPHASKLFPQDFV 298
IYM + + K QK+I + V +VTI+ +YK + + + P++ +
Sbjct: 250 IYMITYIFPNLKGVQKDIQYVTNVTDVTIKNTYKELMQYKEDILPKEIL 298
>gi|347975957|ref|XP_003437308.1| unnamed protein product [Podospora anserina S mat+]
gi|170940166|emb|CAP65393.1| unnamed protein product [Podospora anserina S mat+]
Length = 348
Score = 223 bits (567), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 127/319 (39%), Positives = 184/319 (57%), Gaps = 37/319 (11%)
Query: 8 CYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVD-PSRVGGPENP 66
C E P LIE++ +GD +C CGLV+G+R+ID SEWRTFSN+ G D PSRVG N
Sbjct: 29 CKEFP-PNLIEEFSSGDMVCESCGLVLGERIIDTRSEWRTFSNDDQGNDDPSRVGDGPNL 87
Query: 67 LLNGSDLSTMIGPGRGDASFDGFG---MSKYQNRRTMNSSDRALLNAIREINSMADRINL 123
+++G L T I +FDG G +S QN+ T + + LLNA R+I S D IN
Sbjct: 88 MIDGDQLQTTI-------AFDGKGAKNLSHLQNKMTNDKGSKQLLNAYRDIQSFTDSINT 140
Query: 124 TKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKE 183
+ + A +++K V D K LKG+S +AI + C++IACRQ RTF+EI ++K+SKKE
Sbjct: 141 GTQVANAAKHIYKLVDDAKALKGKSQEAIIAGCIFIACRQANADRTFREIYRLTKVSKKE 200
Query: 184 IGRCFKLILKALETSV---DLITTGDF---------------MSRFCSNLSL--PNMVQK 223
IGR FK + L+ + D+ G F +R+CSN+ P V+
Sbjct: 201 IGRVFKQLETFLQKAGGADDITKAGPFNQTYQAKASTTAVGLCARYCSNMGFRNPVRVED 260
Query: 224 AATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
A +A+K+ ++ + GRSP+SVAAA IYMAS + ++ KEI +AGV++ T++ +Y+
Sbjct: 261 VARRLAKKSQQVADLAGRSPLSVAAACIYMASHLVGEPKASKEIAGVAGVSDGTVKTAYR 320
Query: 284 LMYPHASKL-----FPQDF 297
+Y L FP D
Sbjct: 321 YLYQAKDALLTKEEFPDDM 339
>gi|406607062|emb|CCH41577.1| Transcription initiation factor IIB [Wickerhamomyces ciferrii]
Length = 339
Score = 222 bits (565), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 122/310 (39%), Positives = 185/310 (59%), Gaps = 18/310 (5%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNE-KSGVDPSRVGGPENPLLNGSDLS 74
L E + GD +C+ CGLV+ ++++D SEWRTFSN+ ++G DPSRVG NPLL+G+ LS
Sbjct: 29 LAERFAEGDVVCALCGLVLSNKIVDTRSEWRTFSNDDQNGDDPSRVGEAGNPLLDGNQLS 88
Query: 75 TMIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADRINLTKTIVDRANNL 134
TMIG G+GD S G ++K Q++ ++ D AL +A +I+ M D L + + D A
Sbjct: 89 TMIGYGQGD-SRAGRDLNKAQSKSIVDKKDNALQSAYAKISMMCDAAQLPRIVQDGAKQA 147
Query: 135 FKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGRCFKLILKA 194
+K HD K LKG+S ++I +A + + CR+ V RTFKEIC ++++ KKEIGR F +I K
Sbjct: 148 YKLSHDEKALKGKSQESIMAAVIVVGCRKAQVDRTFKEICTLTRVPKKEIGRVFVIIKKI 207
Query: 195 LETSVDLITT--------------GDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPG 240
LE TT D + RFCS+L L + AA HIA++ ++ ++ G
Sbjct: 208 LEQKNQTTTTYMAQENIQSSQTSAEDLIRRFCSHLGLSIQLSNAAEHIAKRCKDVGVLAG 267
Query: 241 RSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKLFPQDFVFH 300
RSPI++AAA IYM + +I + GV++ TI+ SYK +Y + +L +++
Sbjct: 268 RSPITIAAAVIYMVVLIFKADLAPAKIAEKLGVSDGTIKTSYKFLYENKEELIDPNWIEQ 327
Query: 301 TPI--HELPQ 308
I E+P+
Sbjct: 328 GKIKMEEIPK 337
>gi|361129570|gb|EHL01473.1| putative Transcription initiation factor IIB [Glarea lozoyensis
74030]
Length = 342
Score = 221 bits (563), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 132/315 (41%), Positives = 192/315 (60%), Gaps = 21/315 (6%)
Query: 1 MNINKVC--CYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVD-P 57
+N+ +C C E+P L+E++ +GD +C+ CGLV+G+RV+D SEWRTF+N+ G D P
Sbjct: 19 LNMTLMCKDCKEYP-PNLVEEFSSGDMVCASCGLVLGERVVDSRSEWRTFANDDQGNDDP 77
Query: 58 SRVGGPENPLLNGSDLSTMIGPGRGDA-SFDGFGMSKYQNRRTMNSSDRALLNAIREINS 116
SRVG N LLNGS L T I G G+A S D + + Q + + S ++LL A +EI +
Sbjct: 78 SRVGDGPNVLLNGSQLQTTIAYGDGNARSRD---LLRAQGKTGNDKSTKSLLAAYKEIGA 134
Query: 117 MADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAV 176
D +N+ K + D A LFKQV DGK KG+S DAI + C++IACRQ VPRTF+EI A+
Sbjct: 135 HCDAVNIPKNVSDTAKYLFKQVDDGKAFKGKSQDAIIAGCIFIACRQCNVPRTFREIFAL 194
Query: 177 SKISKKEIGRCFKLIL-------KALETSVDLITTGDFMSRFCSN---LSLPNMVQ---K 223
+K+SKK+IGR FK + A + +V+ ++ + +N L L Q K
Sbjct: 195 TKVSKKDIGRVFKSLEAFFGKQNNAKQNAVNGPPKEEYKNTQSTNAVDLQLGLKSQQFVK 254
Query: 224 AATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
++ +A K + + GRSP+SVAAA IYMAS ++ KEI +AGV++ TIR +YK
Sbjct: 255 VSSGLAEKTPTVAELAGRSPLSVAAACIYMASHLLGKPKTPKEISVVAGVSDGTIRTAYK 314
Query: 284 LMYPHASKLFPQDFV 298
+Y +L D++
Sbjct: 315 HLYNEKERLIDPDWI 329
>gi|429964420|gb|ELA46418.1| hypothetical protein VCUG_02096 [Vavraia culicis 'floridensis']
Length = 305
Score = 221 bits (562), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 115/287 (40%), Positives = 176/287 (61%), Gaps = 7/287 (2%)
Query: 13 DAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSD 72
D + +D + G +C+ CG ++ + +ID +EWRTF + S DPSRVG P NPLL
Sbjct: 18 DQYITDDTKTGAVLCTNCGCIIENTLIDEKTEWRTFDD--SANDPSRVGCPNNPLLESEP 75
Query: 73 LSTMIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADRINLTKTIVDRAN 132
L TMI + + +++ Q + TM +R L+N I++ DR N++KTI DRA
Sbjct: 76 LDTMIA---NIGNLHSYTLNRTQMKSTMRGPERQLINGFNLISAYCDRSNISKTISDRAK 132
Query: 133 NLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGRCFKLIL 192
+FK+V + K LKG++ + + +AC+YIACRQE PRTFKE+ ++ + KKEIGR FKLI
Sbjct: 133 LIFKRVDEKKILKGKNLEGVVAACIYIACRQEQSPRTFKEVSVLTAVPKKEIGRSFKLIF 192
Query: 193 KALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIY 252
+E + +TT D ++RFCS+L+L VQK A I++ +E + G+SP SVAAA IY
Sbjct: 193 PHIE-KLQCVTTDDIVARFCSDLNLGIDVQKIAVQISKNVIEKGCMAGKSPDSVAAAVIY 251
Query: 253 MASQASSD-KRSQKEIGDIAGVAEVTIRQSYKLMYPHASKLFPQDFV 298
+ + + K QK+I + V +VTI+ +YK + + + P+D +
Sbjct: 252 LITYIFPNLKGVQKDIQYVTNVTDVTIKNTYKELMQYKEDILPKDIL 298
>gi|402469405|gb|EJW04304.1| hypothetical protein EDEG_01428 [Edhazardia aedis USNM 41457]
Length = 305
Score = 220 bits (560), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 119/296 (40%), Positives = 176/296 (59%), Gaps = 15/296 (5%)
Query: 13 DAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSD 72
D +IEDY+ G +C+ECG +G R+ID GSEWR F + ++G DPSRVGGP NP L
Sbjct: 17 DKNIIEDYKNGYNVCAECGCTIGPRIIDEGSEWRNFGDSQTGGDPSRVGGPNNPFLETDV 76
Query: 73 LSTMIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADRINLTKTIVDRAN 132
L T+I G S +++ Q + TM +RAL+N + + DR + I DRA
Sbjct: 77 LDTIIS---GKDS-----LARTQMKSTMRGPERALINGFNLLTNYCDRNGIAMVIQDRAK 128
Query: 133 NLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGRCFKLIL 192
+ K V + K KG++ +A+A+ACL++AC+ PRTFKEI + ++ K E+G+C+KLI
Sbjct: 129 TILKTVIEKKLAKGKNAEAVAAACLHLACKHAKCPRTFKEISLMCQVPKDEVGKCYKLIE 188
Query: 193 KALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIY 252
K + V+++ D + RFCS+LSL QK A I+++ + I G+SP SVAAA IY
Sbjct: 189 KHFD-KVEILNVEDIIERFCSDLSLGIKEQKTALRISQRLKKHGISAGKSPASVAAAVIY 247
Query: 253 MASQA-SSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKL-----FPQDFVFHTP 302
M + S DK+ K+I + V+EVTI+ +YK + + L FP+D + P
Sbjct: 248 MVAHLYSKDKKINKDIHYVTCVSEVTIKNTYKDLLQYKYILITEDEFPKDIIDTLP 303
>gi|409049636|gb|EKM59113.1| hypothetical protein PHACADRAFT_249341 [Phanerochaete carnosa
HHB-10118-sp]
Length = 350
Score = 219 bits (559), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 120/300 (40%), Positives = 183/300 (61%), Gaps = 15/300 (5%)
Query: 12 PDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGS 71
P ++E++ +GD +C CGLV+GDRV+D SEWRTF+N++ G DPSRVG +PL+ G
Sbjct: 37 PSPNIVEEFSSGDLVCGTCGLVLGDRVVDTRSEWRTFANDE-GDDPSRVGAAIDPLMEGV 95
Query: 72 D-LSTMIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADRINLTKTIVDR 130
+ L T I G + + + +R + + S+R LL A R+I+S D+ +L KTI D
Sbjct: 96 EQLDTTISFKDGGSGL-ARELQRAASRGSASRSERNLLQAFRDISSWCDQFSLPKTISDI 154
Query: 131 ANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGRCFKL 190
A L+K+ + K L+G+ +A+ +AC++IACR+ VPRTF+EIC ++ +SKK +G+C+K
Sbjct: 155 AKQLYKRSDEEKLLRGKPLEAVIAACIFIACRKAHVPRTFREICNLTHVSKKVLGQCYKQ 214
Query: 191 ILKAL----------ETSVDLITTG--DFMSRFCSNLSLPNMVQKAATHIARKAVELDIV 238
+ +A +TS +TG D + R+C++L LP VQ + I KA +L I
Sbjct: 215 LEQAFNLTPGASADRQTSSATSSTGPEDLLVRYCNHLDLPPNVQPICSDIIVKARDLGIA 274
Query: 239 PGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKLFPQDFV 298
GRSPISVA AIY +S K+I +AGV+E TI+ Y+L Y KL ++++
Sbjct: 275 LGRSPISVAGGAIYFTCHLLGKPKSMKDISAVAGVSEATIKLVYRLYYAEKEKLVKEEWI 334
>gi|403413738|emb|CCM00438.1| predicted protein [Fibroporia radiculosa]
Length = 353
Score = 219 bits (557), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 121/302 (40%), Positives = 179/302 (59%), Gaps = 17/302 (5%)
Query: 12 PDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGS 71
P+ ++E++ +GD +C CGLV+GDRV+D SEWRTF+N++ G DPSRVG +PL+ G
Sbjct: 37 PNPAIVEEFSSGDLVCGTCGLVLGDRVVDTRSEWRTFANDE-GDDPSRVGAASDPLMEGM 95
Query: 72 D-LSTMIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADRINLTKTIVDR 130
+ L T I R S + + +R + S+R LL A R+I S D+ +L KTI D
Sbjct: 96 EQLDTTIS-FRDGGSGIARELQRAASRSQASRSERNLLQAFRDIASWCDQFSLPKTISDI 154
Query: 131 ANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGRCFKL 190
A L+K+ + K L+G+ DA+ +AC++IACRQ VPRTF+EIC ++ +SKK +G+C+K
Sbjct: 155 AKQLYKRSDEEKLLRGKPLDAVIAACIFIACRQAHVPRTFREICNLTHVSKKVLGQCYKA 214
Query: 191 ILKALE--------TSVDLITTG------DFMSRFCSNLSLPNMVQKAATHIARKAVELD 236
+ +A T L T D + R+C++L LP VQ + I +A EL
Sbjct: 215 LEQAFNLTPGASATTDRHLTTPAAARGPEDLLVRYCNHLDLPPNVQPICSDIIIQARELG 274
Query: 237 IVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKLFPQD 296
I GRSP+S+A AIY +S K+I +AGV+E TI+ Y+L Y KL ++
Sbjct: 275 IADGRSPVSIAGGAIYFTCHLLGKVKSAKDISTVAGVSEGTIKLVYRLYYAEKEKLVKEE 334
Query: 297 FV 298
+V
Sbjct: 335 WV 336
>gi|331218510|ref|XP_003321932.1| hypothetical protein PGTG_03469 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|309300922|gb|EFP77513.1| hypothetical protein PGTG_03469 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 345
Score = 219 bits (557), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 131/310 (42%), Positives = 193/310 (62%), Gaps = 24/310 (7%)
Query: 1 MNINKVCCYEHPD---APLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDP 57
+N+ +C PD A L+E++ +GD +C CGLVVGDR++D SEWRTF+ ++ G DP
Sbjct: 23 LNVRLIC----PDCKCARLVEEFSSGDLVCGSCGLVVGDRIVDTRSEWRTFAGDE-GDDP 77
Query: 58 SRVGGPENPLLNGSD-LSTMIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINS 116
SRVGGP NPLLNG + T+I G+ +++ R + + ++++ A I
Sbjct: 78 SRVGGPSNPLLNGVETFETIISFKDGNTGV-ARDLNRAATRAAVKNGEKSVAAAFLSIQD 136
Query: 117 MADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAV 176
M D I+L +T+ D A L+++ + K L+G+ DAI +AC++IACRQ V R+FKEI A+
Sbjct: 137 MCDTISLPRTVTDIAKQLYRRADEEKLLRGKQVDAIIAACIFIACRQSKVGRSFKEIVAL 196
Query: 177 SKISKKEIGRCFKLILKALETSVDL------ITTG--------DFMSRFCSNLSLPNMVQ 222
+++ KK+IG+CFK + A ETS TTG D M+RFCS+L LP VQ
Sbjct: 197 TRVPKKQIGQCFKALSAAFETSAVGGGGALNTTTGETSGAGAEDLMARFCSHLGLPFFVQ 256
Query: 223 KAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSY 282
A IA ++ I+ GRSPISVA+A IY AS ++ +S K+I +AGV+EVTI+ +Y
Sbjct: 257 SGAKRIAILQRDMGILAGRSPISVASACIYFASHLYNNPKSAKDIAGVAGVSEVTIKIAY 316
Query: 283 KLMYPHASKL 292
KL+YP ++
Sbjct: 317 KLLYPKREEI 326
>gi|340715880|ref|XP_003396435.1| PREDICTED: transcription initiation factor IIB-like [Bombus
terrestris]
Length = 120
Score = 217 bits (553), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 104/116 (89%), Positives = 110/116 (94%)
Query: 194 ALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYM 253
ALETSVDLITTGDFMSRFCSNL LPNMVQ+AATHIARKAVE+DIVPGRSPISVAAAAIYM
Sbjct: 5 ALETSVDLITTGDFMSRFCSNLGLPNMVQRAATHIARKAVEIDIVPGRSPISVAAAAIYM 64
Query: 254 ASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKLFPQDFVFHTPIHELPQL 309
ASQAS DKRSQKEIGDIAGVA+VTIRQSYKLMYPHA KLFP+DF F TPI +LPQ+
Sbjct: 65 ASQASEDKRSQKEIGDIAGVADVTIRQSYKLMYPHAGKLFPEDFRFATPIDQLPQM 120
>gi|258563760|ref|XP_002582625.1| transcription initiation factor IIB [Uncinocarpus reesii 1704]
gi|237908132|gb|EEP82533.1| transcription initiation factor IIB [Uncinocarpus reesii 1704]
Length = 353
Score = 217 bits (552), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 125/315 (39%), Positives = 180/315 (57%), Gaps = 28/315 (8%)
Query: 8 CYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNE-KSGVDPSRVGGPENP 66
C E+P P + + + IC CGLV+ DR ID SEWRTFSN+ ++ DPSRVG NP
Sbjct: 30 CKENP--PNLRTPDSHETICGSCGLVLADREIDQHSEWRTFSNDDQNNDDPSRVGDAANP 87
Query: 67 LLNGSDLSTMIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADRINLTKT 126
LLNG+ L T I G+G A + + QN+ + ++RALL A +EI ++ D N+ K
Sbjct: 88 LLNGNQLETQISYGQGGAKTRE--LHRAQNKMSSEKTNRALLAAYKEIGALCDGFNIQKN 145
Query: 127 IVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGR 186
+ D A LFK V D K KG+S D I + C++IACRQ VPRTF EI A++++SKKEIGR
Sbjct: 146 VADTAKYLFKIVDDAKAFKGKSQDVIIAGCIFIACRQCKVPRTFTEIFALTRVSKKEIGR 205
Query: 187 CFKLILK-----ALETSVDLITTG------------------DFMSRFCSNLSLPNMVQK 223
+K + K +E ++++G D SRFC+ L LP V
Sbjct: 206 IYKTLEKFFTAQNMERINSVVSSGGVPDPNETYTATTSTKPSDLCSRFCNLLDLPFQVTT 265
Query: 224 AATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
++ +A + + + GRSP+S+ AA+IYMAS +S KEI +A V++ TIR +YK
Sbjct: 266 VSSALADRVTSMGDLAGRSPLSIVAASIYMASFLMGQGKSAKEISAVAHVSDGTIRGAYK 325
Query: 284 LMYPHASKLFPQDFV 298
+Y +L ++
Sbjct: 326 QLYAERERLIHPSWI 340
>gi|395329967|gb|EJF62352.1| cyclin-like protein [Dichomitus squalens LYAD-421 SS1]
Length = 351
Score = 217 bits (552), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 119/304 (39%), Positives = 181/304 (59%), Gaps = 23/304 (7%)
Query: 12 PDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNG- 70
P+ ++E++ +GD +C CGLV+GDR++D SEWRTF+N++ G DPSRVG +PL+ G
Sbjct: 37 PNPNIVEEFSSGDLVCGTCGLVLGDRIVDTRSEWRTFANDE-GDDPSRVGAASDPLMEGI 95
Query: 71 SDLSTMIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADRINLTKTIVDR 130
L T I G + + + +R + S+R LL A R+I++ D+ +L KTI D
Sbjct: 96 EQLDTTISFKDGGSGL-ARELQRAASRANSSRSERNLLQAFRDISNWCDQFSLPKTISDI 154
Query: 131 ANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGRCFKL 190
A L+K+ + K L+G+ +A+ +AC++IACRQ VPRTF+EIC ++ +SKK +G+C+
Sbjct: 155 AKQLYKRSDEEKLLRGKPLEAVIAACIFIACRQAHVPRTFREICNLTHVSKKVLGQCY-- 212
Query: 191 ILKALETSVDLI--------------TTG--DFMSRFCSNLSLPNMVQKAATHIARKAVE 234
KALE + +L TTG D + R+C++L+LP Q I KA E
Sbjct: 213 --KALEQAFNLTPGASQDRHAITPSGTTGAEDLLVRYCNHLALPPNFQPICADIIVKARE 270
Query: 235 LDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKLFP 294
L I GRSP+S+A AIY ++ +EI +AGV+E TI+ YKL Y KL
Sbjct: 271 LGIADGRSPVSIAGGAIYFTCYLLDKPKTVREISTVAGVSEGTIKLVYKLYYAEKEKLVK 330
Query: 295 QDFV 298
++++
Sbjct: 331 EEWI 334
>gi|393246466|gb|EJD53975.1| cyclin-like protein [Auricularia delicata TFB-10046 SS5]
Length = 349
Score = 216 bits (551), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 121/305 (39%), Positives = 188/305 (61%), Gaps = 24/305 (7%)
Query: 12 PDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGS 71
P ++E++ +GD +C+ CGLV+GDR++D SEWRTF+N++ G DPSRVG ++PLL+
Sbjct: 36 PVPKIVEEFGSGDLVCATCGLVLGDRIVDTRSEWRTFANDE-GDDPSRVGAAQDPLLDEQ 94
Query: 72 D-LSTMIGPGRGDASFDGFGMSKYQNR---RTMNS--SDRALLNAIREINSMADRINLTK 125
D L+T IG G+ G+++ R R MN S+R++ A REI++M D +L K
Sbjct: 95 DQLATAIGFRDGNT-----GVARELQRAASRGMNGARSERSIQTAFREISNMCDSFSLPK 149
Query: 126 TIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIG 185
+I D A L+K+ + K L+ +S DA+ +AC++IACRQ VPRTF+EIC ++++ KK IG
Sbjct: 150 SISDIAKQLYKRADEEKLLRAKSLDAVIAACIFIACRQAQVPRTFREICELTRVPKKIIG 209
Query: 186 RCFKLILKAL--------ETSVDLITTG----DFMSRFCSNLSLPNMVQKAATHIARKAV 233
+C+K + +A T+ I G D + R+C++L LP +Q A+ I +A
Sbjct: 210 QCYKTLEQAFNLAPGANGSTNDRGIVAGTGPEDLLVRYCNHLGLPPNIQSYASDIIVEAR 269
Query: 234 ELDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKLF 293
I GRSP+S+A AAI+ +S K+I +AGV+E T++ YKL+Y KL
Sbjct: 270 NQGIAAGRSPVSIAGAAIFFTCHLLDQTKSVKDITGVAGVSEGTLKLVYKLLYADREKLV 329
Query: 294 PQDFV 298
Q+++
Sbjct: 330 KQEWI 334
>gi|119187159|ref|XP_001244186.1| conserved hypothetical protein [Coccidioides immitis RS]
gi|303317234|ref|XP_003068619.1| transcription initiation factor IIB, putative [Coccidioides
posadasii C735 delta SOWgp]
gi|240108300|gb|EER26474.1| transcription initiation factor IIB, putative [Coccidioides
posadasii C735 delta SOWgp]
gi|320038548|gb|EFW20483.1| transcription initiation factor IIB [Coccidioides posadasii str.
Silveira]
gi|392870902|gb|EAS32745.2| transcription initiation factor IIB [Coccidioides immitis RS]
Length = 353
Score = 216 bits (551), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 125/315 (39%), Positives = 180/315 (57%), Gaps = 28/315 (8%)
Query: 8 CYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNE-KSGVDPSRVGGPENP 66
C E+P P + + + IC CGLV+ DR ID SEWRTFSN+ ++ DPSRVG NP
Sbjct: 30 CKENP--PNLRTPDSHETICGSCGLVLADREIDQHSEWRTFSNDDQNNDDPSRVGDAANP 87
Query: 67 LLNGSDLSTMIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADRINLTKT 126
LLNG+ L T I G+G A + + QN+ + ++RALL A +EI ++ D N+ K
Sbjct: 88 LLNGNQLETQISYGQGGAKTRE--LHRAQNKMSSEKTNRALLAAYKEIGALCDGFNIQKN 145
Query: 127 IVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGR 186
+ D A LFK V D K KG+S D I + C++IACRQ VPRTF EI A++++SKKEIGR
Sbjct: 146 VADTAKYLFKVVDDAKAFKGKSQDVIIAGCIFIACRQCKVPRTFTEIFALTRVSKKEIGR 205
Query: 187 CFKLILK-----ALETSVDLITTG------------------DFMSRFCSNLSLPNMVQK 223
+K + K LE ++++G D +RFC+ L LP V
Sbjct: 206 IYKALEKFFTAQNLERINSVVSSGGVPDPNETYTATTSTKPSDLCNRFCNLLDLPFQVTN 265
Query: 224 AATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
++ +A + + + GRSP+S+ AA+IYMAS +S KEI +A V++ TIR +YK
Sbjct: 266 VSSALADRVTSMGDLAGRSPLSIVAASIYMASFLMGQGKSAKEISAVAHVSDGTIRGAYK 325
Query: 284 LMYPHASKLFPQDFV 298
+Y +L ++
Sbjct: 326 QLYAERERLIDPAWI 340
>gi|367022010|ref|XP_003660290.1| hypothetical protein MYCTH_2132560 [Myceliophthora thermophila ATCC
42464]
gi|347007557|gb|AEO55045.1| hypothetical protein MYCTH_2132560 [Myceliophthora thermophila ATCC
42464]
Length = 356
Score = 216 bits (549), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 125/321 (38%), Positives = 187/321 (58%), Gaps = 34/321 (10%)
Query: 8 CYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVD-PSRVGGPENP 66
C E P L+E+Y +GD +C+ CGLV+ DR+ID SEWRTFS + +G D PSRVG N
Sbjct: 33 CKEEP-PNLVEEYSSGDMVCASCGLVL-DRIIDTRSEWRTFSGDDNGNDDPSRVGDAPNL 90
Query: 67 LLNGSDLSTMIGPGRGDASFDGFG---MSKYQNRRTMNSSDRALLNAIREINSMADRINL 123
+++G L T I +FDG G ++ QN+ + +ALL A R+I ++ D IN
Sbjct: 91 MIDGDQLQTSI-------AFDGKGAKNLAHLQNKVNQDKGTKALLQAYRDIQALTDSINA 143
Query: 124 TKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKE 183
+ + A ++FK V D K LKG+S +AI + C++IACRQ VPRTF+E+ ++K+SKKE
Sbjct: 144 GAQVANTAKHIFKMVDDNKALKGKSQEAIVAGCIFIACRQTNVPRTFREVYGLTKVSKKE 203
Query: 184 IGRCFKLILKALET--SVDLI---------------TTGDFMS-RFCSNLSL--PNMVQK 223
IGR FK + L+ D + TT D + R+CSNL P V+
Sbjct: 204 IGRVFKQLEAFLQKMGGEDKVAKATGYTQQYQAKGSTTADELCIRYCSNLGFRNPVRVEN 263
Query: 224 AATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
A +A K+ E+ + GRSP+SVAAA IYMAS + RS K+I ++ V++ T++ +Y+
Sbjct: 264 VARRLAEKSSEVSDLAGRSPLSVAAACIYMASHLVGEPRSTKQISVVSSVSDGTVKTAYR 323
Query: 284 LMYPHASKLFPQDFVFHTPIH 304
+Y + ++ VF ++
Sbjct: 324 YLYAAKDTILTKE-VFSEDMY 343
>gi|255942455|ref|XP_002561996.1| Pc18g01520 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211586729|emb|CAP94376.1| Pc18g01520 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 350
Score = 216 bits (549), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 123/317 (38%), Positives = 179/317 (56%), Gaps = 27/317 (8%)
Query: 6 VCCYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNE-KSGVDPSRVGGPE 64
VC D P +E + + +C CGLV+ DR ID+ SEWRTFSN+ ++ DPSRVG
Sbjct: 24 VCPECKEDPPNLEFPDSHETVCGSCGLVLADREIDLHSEWRTFSNDDQNNDDPSRVGDAS 83
Query: 65 NPLLNGSDLSTMIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADRINLT 124
NPLLNG+ L T I G + D + + QN+++ +++ALL A +EI ++ D N+
Sbjct: 84 NPLLNGAQLETSIASGGSGRARD---LYRAQNKQSGEKANKALLAAYKEIGALCDGFNIQ 140
Query: 125 KTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEI 184
KT+ D A LFK V D K KG+S + I + C++IACRQ VPRTF EI AV+K+++KEI
Sbjct: 141 KTVADTAKYLFKMVDDAKAFKGKSQEVIIAGCIFIACRQCKVPRTFTEIFAVTKVTRKEI 200
Query: 185 GRCFKLILK------------ALETSVDLITTGDF-----------MSRFCSNLSLPNMV 221
GR +K + K ALE GD+ +RFC+ L LP V
Sbjct: 201 GRIYKALEKFFTTQNVERHNAALENGETHDFAGDYNATTSTKPSDLCNRFCNLLDLPYQV 260
Query: 222 QKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQS 281
+ ++ + + + GRSP+S+ AA IYMAS +S KEI +A V++ TIR +
Sbjct: 261 TSVSVSLSDRVTAMGDLAGRSPLSIVAACIYMASFLMGHGKSAKEISQVAHVSDGTIRGA 320
Query: 282 YKLMYPHASKLFPQDFV 298
YK +Y +L +++
Sbjct: 321 YKQLYAERERLVDPEWI 337
>gi|425768808|gb|EKV07320.1| Transcription initiation protein [Penicillium digitatum Pd1]
gi|425770141|gb|EKV08614.1| Transcription initiation protein [Penicillium digitatum PHI26]
Length = 350
Score = 216 bits (549), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 123/322 (38%), Positives = 182/322 (56%), Gaps = 27/322 (8%)
Query: 1 MNINKVCCYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNE-KSGVDPSR 59
++ + VC D P +E + + +C CGLV+ DR ID+ SEWRTFSN+ ++ DPSR
Sbjct: 19 LSAHLVCPECKEDPPNLEFPDSHETVCGSCGLVLADREIDLHSEWRTFSNDDQNNDDPSR 78
Query: 60 VGGPENPLLNGSDLSTMIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMAD 119
VG NPLLNG+ L T I G + D + + QN+++ +++ALL A +EI ++ D
Sbjct: 79 VGDASNPLLNGAQLETSIASGGSGRARD---LYRAQNKQSGEKANKALLAAYKEIGALCD 135
Query: 120 RINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKI 179
N+ KT+ D A LFK V D K KG+S + I + C++IACRQ VPRTF EI AV+K+
Sbjct: 136 GFNIQKTVADTAKYLFKMVDDAKAFKGKSQEVIIAGCIFIACRQCKVPRTFTEIFAVTKV 195
Query: 180 SKKEIGRCFKLILK------------ALETSVDLITTGDF-----------MSRFCSNLS 216
++KEIGR +K + K ALE GD+ +RFC+ L
Sbjct: 196 TRKEIGRIYKALEKFFTTQNVERHNAALENGETHDFAGDYNATTSTKPSDLCNRFCNLLD 255
Query: 217 LPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEV 276
LP V + ++ + + + GRSP+S+ AA IYMAS +S KEI +A V++
Sbjct: 256 LPYQVTSVSVSLSDRVTAMGDLAGRSPLSIVAACIYMASFLMGHGKSAKEISQVAHVSDG 315
Query: 277 TIRQSYKLMYPHASKLFPQDFV 298
TIR +YK +Y +L +++
Sbjct: 316 TIRGAYKQLYAERERLVDPEWI 337
>gi|255089519|ref|XP_002506681.1| predicted protein [Micromonas sp. RCC299]
gi|226521954|gb|ACO67939.1| predicted protein [Micromonas sp. RCC299]
Length = 364
Score = 215 bits (548), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 129/311 (41%), Positives = 184/311 (59%), Gaps = 21/311 (6%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSN-EKSGVDPSRVGGPENPLLNGSDLS 74
+IED++ GD +C+ECGLV+ RV+D SEWRTFS+ +K+GVDP+R GP N +L LS
Sbjct: 28 IIEDHQQGDLVCTECGLVLESRVVDESSEWRTFSDSDKAGVDPNRTAGPTNRMLANGGLS 87
Query: 75 TMIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADRINLTKTIVDRANNL 134
T IG D +++ +++ NR + DRALL A I MAD + +T + D A ++
Sbjct: 88 TSIGKNP-DGTYNQT-LTRLHNRGA--NPDRALLQAFGRIGEMADHLGMTSVVKDGACDI 143
Query: 135 FKQ-VHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEIC-AVSKISKKEIGRCFKLIL 192
++ V G+ L G+S A+ +A LYIACRQEG RTFKEIC + KEIGRC+K I+
Sbjct: 144 YRTVVKPGQPLLGKSQPAMFAASLYIACRQEGTNRTFKEICGGAPNTTVKEIGRCYKYIV 203
Query: 193 KAL-----ETSVDLITTGDFMSRFCSNLSLPNM-VQKAATHIARKAVELDIVPG----RS 242
KA+ + +IT +RFC NL L N+ K AT + L I G +
Sbjct: 204 KAIDGLNTQMMEQMITPEKLTNRFCGNLGLANLEFLKLATAVIATFRSLRITEGHTSEKQ 263
Query: 243 PISVAAAAIYMASQASSDKRSQ----KEIGDIAGVAEVTIRQSYKLMYPHASKLFPQDFV 298
P SVAAAAI++ Q + ++ K I +I+G+AE TI SY MYP+A+K+ P+ +V
Sbjct: 264 PASVAAAAIWLCVQIWRGEAAEGIDVKRISEISGMAEATILTSYADMYPYAAKMLPEAYV 323
Query: 299 FHTPIHELPQL 309
P E P++
Sbjct: 324 ERIPELEAPRM 334
>gi|389746675|gb|EIM87854.1| cyclin-like protein [Stereum hirsutum FP-91666 SS1]
Length = 353
Score = 215 bits (548), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 124/305 (40%), Positives = 182/305 (59%), Gaps = 24/305 (7%)
Query: 12 PDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNG- 70
P+ +IE++ +GD +C CGLV+GDRV+D SEWRTF+N++ G DPSRVGGP +PLL G
Sbjct: 36 PNPNIIEEFGSGDLVCGTCGLVLGDRVVDTRSEWRTFANDE-GDDPSRVGGPSDPLLEGI 94
Query: 71 SDLSTMIGPGRGDASFDGFGMSKYQNR---RTMNS-SDRALLNAIREINSMADRINLTKT 126
L T+I G G GM++ R R N+ S+R LL+A R+I+S D+ +L KT
Sbjct: 95 GQLDTIISFRDG-----GSGMARELQRAASRAQNTRSERNLLSAFRDISSWCDQFSLPKT 149
Query: 127 IVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGR 186
I D A L+K+ + K L+G+ +A+ +AC++IACRQ VPRTF+EIC ++ +SKK +G+
Sbjct: 150 ISDIAKQLYKRSDEEKLLRGKPLEAVIAACIFIACRQAHVPRTFREICNLTHVSKKVLGQ 209
Query: 187 CFKLILKALETS-----------VDLITTG--DFMSRFCSNLSLPNMVQKAATHIARKAV 233
C+K + +A S +I+TG D + R+C++L LP I +A
Sbjct: 210 CYKALEQAFNLSPGAQNHNSTNGTQVISTGPEDLLIRYCNHLDLPPYFHGICKDIVVEAR 269
Query: 234 ELDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKLF 293
I GRSPIS+A AI+ +S +EI +AGV+E T++ YKL KL
Sbjct: 270 NRGIADGRSPISIAGGAIFFTCFLLGKPKSLREICTVAGVSEGTVKLVYKLYCADKDKLV 329
Query: 294 PQDFV 298
Q ++
Sbjct: 330 KQKWI 334
>gi|367045134|ref|XP_003652947.1| hypothetical protein THITE_2170336 [Thielavia terrestris NRRL 8126]
gi|347000209|gb|AEO66611.1| hypothetical protein THITE_2170336 [Thielavia terrestris NRRL 8126]
Length = 349
Score = 215 bits (547), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 123/326 (37%), Positives = 190/326 (58%), Gaps = 39/326 (11%)
Query: 1 MNINKVC--CYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVD-P 57
+N+ +C C E P L+E+ +GD +C+ CGLV+G+R+ID SEWRTFSN+ G D P
Sbjct: 21 LNVILMCPDCKESP-PNLVEETSSGDVVCASCGLVLGERIIDSRSEWRTFSNDDQGNDDP 79
Query: 58 SRVGGPENPLLNGSDLSTMIGPGRGDASFDGFG---MSKYQNRRTMNSSDRALLNAIREI 114
SRVG N +++G L T I ++DG ++ QN+ + +AL+ A R+I
Sbjct: 80 SRVGEGPNLMIDGDQLQTAI-------AYDGKNAKNLAHLQNKINQDKGSKALMAAYRDI 132
Query: 115 NSMADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEIC 174
S+ D IN + + A ++FK V D K LKG+S +AI + C++IACRQ GVPRTF+EI
Sbjct: 133 QSLTDSINAGAQVANAAKHIFKMVEDNKALKGKSQEAIIAGCIFIACRQTGVPRTFREIY 192
Query: 175 AVSKISKKEIGRCFKLILKALET--SVDLITTG----------------DFMSRFCSNLS 216
++K+SKKEIGR FK + L+ D I + +R+CSNL
Sbjct: 193 GLTKVSKKEIGRVFKQLEVFLQKMGGEDAIAQASLFNQVYMAKGSTSAVELCARYCSNLH 252
Query: 217 L--PNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVA 274
P V+ A +A K+ ++ + GRSP+SVAAA IYMAS + R+ ++I +++GV+
Sbjct: 253 FRNPVSVENIARRLADKSTQVSDLAGRSPLSVAAACIYMASHIVGEPRNPRQISEVSGVS 312
Query: 275 EVTIRQSYKLMYPH-----ASKLFPQ 295
+ T++ +Y+ +Y ++FP+
Sbjct: 313 DGTVKTAYRYLYAARDTFLTEEIFPE 338
>gi|260941562|ref|XP_002614947.1| conserved hypothetical protein [Clavispora lusitaniae ATCC 42720]
gi|238851370|gb|EEQ40834.1| conserved hypothetical protein [Clavispora lusitaniae ATCC 42720]
Length = 349
Score = 215 bits (547), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 129/319 (40%), Positives = 185/319 (57%), Gaps = 25/319 (7%)
Query: 1 MNINKVC--CYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNE-KSGVDP 57
+NI VC C P LIE + GD +C CGLV+ DRV+D SEWRTFSN+ ++G DP
Sbjct: 19 LNITLVCPECKIFP-PDLIERFSEGDIVCGSCGLVLSDRVVDTRSEWRTFSNDDQNGDDP 77
Query: 58 SRVGGPENPLLNGSDLSTMIG--PGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREIN 115
SRVG NPLL+ DLSTMI P A G +++ Q++ ++ D AL A +I+
Sbjct: 78 SRVGDAGNPLLDTEDLSTMISYVPENVKA---GRELNRAQSKSLVDKKDNALSAAYAKIS 134
Query: 116 SMADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICA 175
M D L K + D A ++K VHD + L+G+S ++I +A ++I CR+ V RTFKEI A
Sbjct: 135 QMCDGYQLPKIVQDGAKEVYKLVHDERLLRGKSQESIMAAAIFIGCRKAKVARTFKEIWA 194
Query: 176 VSKISKKEIGRCFKLILKALET-------SVDLI---------TTGDFMSRFCSNLSLPN 219
++ + KKEIG+ FK+I + ++ + LI + D + RFCS+L L N
Sbjct: 195 LTNVPKKEIGKVFKIIKRVIQEKNETNPGAYSLIKDSEQTTQTSAEDLIRRFCSHLGLSN 254
Query: 220 MVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIR 279
V AA +IAR+ E I+ GRSPI++AA IYM S + + +I + GV++ TI+
Sbjct: 255 EVTNAAEYIARRCKESGILAGRSPITIAATVIYMTSLLFGAEVTPSKIANKTGVSDGTIK 314
Query: 280 QSYKLMYPHASKLFPQDFV 298
S K+MY KL +V
Sbjct: 315 TSLKVMYEDREKLIDPSWV 333
>gi|121705606|ref|XP_001271066.1| transcription initiation protein [Aspergillus clavatus NRRL 1]
gi|119399212|gb|EAW09640.1| transcription initiation protein [Aspergillus clavatus NRRL 1]
Length = 350
Score = 214 bits (546), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 122/315 (38%), Positives = 180/315 (57%), Gaps = 29/315 (9%)
Query: 8 CYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNE-KSGVDPSRVGGPENP 66
C E P P +E + + +C CGLV+ DR ID+ SEWRTFSN+ ++ DPSRVG NP
Sbjct: 28 CREVP--PNLEFPDSHETVCGSCGLVLADREIDMHSEWRTFSNDDQNNDDPSRVGDATNP 85
Query: 67 LLNGSDLSTMIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADRINLTKT 126
LLNG L T I G + D + + QN+++ +++ALL A +EI ++ D N+ K
Sbjct: 86 LLNGDQLETQIASGGSGRARD---LYRAQNKQSSEKANKALLAAYKEIGALCDGFNIQKN 142
Query: 127 IVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGR 186
+ D A LFK V D K KG+S D I + C++IACRQ VPRTF EI AV+K+++KEIGR
Sbjct: 143 VADTAKYLFKIVDDAKAFKGKSQDVIIAGCIFIACRQCKVPRTFTEIFAVTKVTRKEIGR 202
Query: 187 CFKLILK-----ALETSVDLITTG------------------DFMSRFCSNLSLPNMVQK 223
+K + K LE ++++G D +RFC+ L LP V
Sbjct: 203 IYKALEKFFTAQNLERINAVVSSGGVPDPNDTYTATTSTKPSDLCNRFCNLLDLPYQVTS 262
Query: 224 AATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
++ ++ + + + GRSP+S+ AA IYMAS +S KEI +A V++ TIR +YK
Sbjct: 263 VSSALSDRVTTMGDLAGRSPLSIVAACIYMASYLMGHGKSAKEISQVAHVSDGTIRGAYK 322
Query: 284 LMYPHASKLFPQDFV 298
+Y +L +++
Sbjct: 323 QLYAERERLIDPEWI 337
>gi|116195684|ref|XP_001223654.1| hypothetical protein CHGG_04440 [Chaetomium globosum CBS 148.51]
gi|88180353|gb|EAQ87821.1| hypothetical protein CHGG_04440 [Chaetomium globosum CBS 148.51]
Length = 353
Score = 214 bits (545), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 120/313 (38%), Positives = 179/313 (57%), Gaps = 33/313 (10%)
Query: 8 CYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGV-DPSRVGGPENP 66
C E P L+E+Y +GD +C CGLV+ DR+ID SEWRTFS + +G DPSRVG N
Sbjct: 30 CKEDP-PRLVEEYSSGDMVCETCGLVL-DRIIDTRSEWRTFSGDDNGNDDPSRVGDAPNL 87
Query: 67 LLNGSDLSTMIGPGRGDASFDGFG---MSKYQNRRTMNSSDRALLNAIREINSMADRINL 123
+++G L T I +FDG G ++ QN+ + + LL A R+I ++ D IN
Sbjct: 88 MIDGDQLQTAI-------AFDGKGAKNLAHLQNKINQDKGTKVLLQAYRDIQALTDSINA 140
Query: 124 TKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKE 183
+ + A ++FK V D K LKG+S +AI + C++IACRQ VPRTF+E+ ++K+SKKE
Sbjct: 141 GTQVANTAKHIFKMVDDNKALKGKSQEAIVAGCIFIACRQTNVPRTFREVYGLTKVSKKE 200
Query: 184 IGRCFKLILKALE------------------TSVDLITTGDFMSRFCSNLSLPNM--VQK 223
IGR FK + L+ T+ T + R+CSNL N V+
Sbjct: 201 IGRVFKQLESFLQKMGGEDKVAKATGYSQQYTAKGSTTADELCIRYCSNLGFRNAVRVES 260
Query: 224 AATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
A +A K+ E+ + GRSP+SVAAA IYMAS + RS K+I ++ V++ T++ +Y+
Sbjct: 261 VARRLAEKSSEVSDLAGRSPLSVAAACIYMASHLVGEPRSTKQISVVSSVSDGTVKTAYR 320
Query: 284 LMYPHASKLFPQD 296
+Y + ++
Sbjct: 321 YLYAAKDTILTKE 333
>gi|449549470|gb|EMD40435.1| hypothetical protein CERSUDRAFT_111033 [Ceriporiopsis subvermispora
B]
Length = 351
Score = 214 bits (545), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 117/300 (39%), Positives = 183/300 (61%), Gaps = 15/300 (5%)
Query: 12 PDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGS 71
P+ ++E++ +GD +C CGLV+GDRV+D SEWRTF+N++ G DPSRVG +PL++G
Sbjct: 37 PNPNIVEEFSSGDLVCGTCGLVLGDRVVDTRSEWRTFANDE-GDDPSRVGAASDPLMDGM 95
Query: 72 D-LSTMIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADRINLTKTIVDR 130
+ L T I G + + + +R + + S+R LL A R+I++ D+ +L KTI D
Sbjct: 96 EQLDTTISFRDGGSGL-ARELQRAASRSSASRSERNLLQAFRDISNWCDQFSLPKTISDI 154
Query: 131 ANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGRCFKL 190
A L+K+ + K L+G+ DA+ +AC++IACRQ VPRTF+EIC ++ +SKK +G+C+K
Sbjct: 155 AKQLYKRSDEEKLLRGKPLDAVIAACIFIACRQAHVPRTFREICNLTHVSKKVLGQCYKA 214
Query: 191 ILKAL----------ETSVDLITTG--DFMSRFCSNLSLPNMVQKAATHIARKAVELDIV 238
+ +A +S TTG D + R+C++L LP VQ + +KA EL I
Sbjct: 215 LEQAFNLTPGASQDRHSSTPSGTTGPEDLLIRYCNHLDLPPNVQPICADVIKKARELGIA 274
Query: 239 PGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKLFPQDFV 298
GRSP+S+A AIY + ++I +AGV+E TI+ Y+L Y KL ++++
Sbjct: 275 DGRSPVSIAGGAIYFTCHLLGKVKPARDISSVAGVSEGTIKLVYRLYYAEKEKLVKEEWI 334
>gi|296824618|ref|XP_002850683.1| transcription initiation factor IIB [Arthroderma otae CBS 113480]
gi|238838237|gb|EEQ27899.1| transcription initiation factor IIB [Arthroderma otae CBS 113480]
Length = 352
Score = 214 bits (545), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 125/315 (39%), Positives = 178/315 (56%), Gaps = 29/315 (9%)
Query: 8 CYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNE-KSGVDPSRVGGPENP 66
C E+P + E + + IC CGLV+ DR ID SEWRTFSN+ ++ DPSRVG NP
Sbjct: 30 CKENPPNLVPESH---ETICGSCGLVLADREIDPHSEWRTFSNDDQNNDDPSRVGDASNP 86
Query: 67 LLNGSDLSTMIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADRINLTKT 126
LLNG+ L T I G G A + + QN+ + +++ALL A +EI S+ D N+ K
Sbjct: 87 LLNGNQLETQISFGTGGAR--SRELHRAQNKMSTEKTNKALLAAYKEIGSLCDGFNIQKN 144
Query: 127 IVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGR 186
+ D A LFK V D K KG+S D I + C++IACRQ VPRTF EI AV+++SKKEIGR
Sbjct: 145 VADTAKYLFKIVDDAKAFKGKSQDVIIAGCIFIACRQCKVPRTFTEIFAVTRVSKKEIGR 204
Query: 187 CFKLILK-----ALETSVDLITTG------------------DFMSRFCSNLSLPNMVQK 223
+K + K LE +++ G D +RFC+ L LP V
Sbjct: 205 IYKALEKFFTAQNLERINSVVSNGGVPDPNDAYTGTTSTKPSDLCNRFCNLLDLPFQVTN 264
Query: 224 AATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
++ +A + + + GRSP+S+ AA+IYMAS ++ KEI +A V++ TIR +YK
Sbjct: 265 VSSMLADRVTSMGDLAGRSPLSIVAASIYMASFLMGHGKTAKEISGVAHVSDGTIRGAYK 324
Query: 284 LMYPHASKLFPQDFV 298
+Y +L ++
Sbjct: 325 QLYAERERLIDPAWI 339
>gi|190344839|gb|EDK36597.2| hypothetical protein PGUG_00695 [Meyerozyma guilliermondii ATCC
6260]
Length = 339
Score = 214 bits (544), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 120/312 (38%), Positives = 182/312 (58%), Gaps = 23/312 (7%)
Query: 1 MNINKVC--CYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNE-KSGVDP 57
+N+ C C +P LIE + GD +C CGLV+ DRV+D SEWRTFSN+ ++G DP
Sbjct: 19 LNVTLSCPECKTYP-PDLIERFSEGDIVCGTCGLVLSDRVVDTRSEWRTFSNDDRNGEDP 77
Query: 58 SRVGGPENPLLNGSDLSTMIG--PGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREIN 115
+RVG NPLL+ DLSTMI P G A G +S+ Q++ ++ D +L+ A +I+
Sbjct: 78 NRVGDASNPLLDSEDLSTMISYVPNDGRA---GRDLSRAQSKSAIDRKDSSLVAAYSKIS 134
Query: 116 SMADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICA 175
M + L + + D + ++K VHD K L+G+S ++I +A + + CR+ V R+F EI A
Sbjct: 135 HMCEGYQLPRVVQDASKEIYKLVHDEKRLRGKSQESIMAASICLGCRKANVGRSFLEIAA 194
Query: 176 VSKISKKEIGRCFKLILKALETS--------------VDLITTGDFMSRFCSNLSLPNMV 221
++ + KKE+GR FK +++ L+ V + D + RFCS+L L +
Sbjct: 195 LTNVPKKELGRVFKTMIQLLQEKHSNNPDVMHMTQQPVSSTSAEDLIRRFCSHLGLSTQI 254
Query: 222 QKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQS 281
AA +IAR+ + I+ GRSPI+VAA IYMAS + S I D AGV++ TI+ S
Sbjct: 255 SNAAEYIARRCKDEQILSGRSPITVAATVIYMASLIFNVDVSPARIADKAGVSDGTIKTS 314
Query: 282 YKLMYPHASKLF 293
YK+++ K+
Sbjct: 315 YKVLFEEKDKIL 326
>gi|326482199|gb|EGE06209.1| transcription initiation factor IIB [Trichophyton equinum CBS
127.97]
Length = 352
Score = 213 bits (543), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 125/315 (39%), Positives = 180/315 (57%), Gaps = 29/315 (9%)
Query: 8 CYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNE-KSGVDPSRVGGPENP 66
C E+P + E + + IC CGLV+ DR ID SEWRTFSN+ ++ DPSRVG NP
Sbjct: 30 CKENPPNLVPESH---ETICGSCGLVLADREIDPHSEWRTFSNDDQNNDDPSRVGDASNP 86
Query: 67 LLNGSDLSTMIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADRINLTKT 126
LLNG+ L T I G G A + + Q++ + ++++ALL A +EI S+ D N+ K
Sbjct: 87 LLNGNQLETQISFGTGGAR--SRELHRAQSKMSTENTNKALLAAYKEIGSLCDGFNIQKN 144
Query: 127 IVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGR 186
+ D A LFK V D K KG+S D I + C++IACRQ VPRTF EI AV+++SKKEIGR
Sbjct: 145 VADTAKYLFKIVDDAKAFKGKSQDVIIAGCIFIACRQCKVPRTFTEIFAVTRVSKKEIGR 204
Query: 187 CFKLILK-----ALETSVDLITTG------------------DFMSRFCSNLSLPNMVQK 223
+K + K LE ++++G D +RFC+ L LP V
Sbjct: 205 IYKALEKFFTAQNLERINSVVSSGGVPDPNDSYTGTTSTKPSDLCNRFCNLLDLPFQVTN 264
Query: 224 AATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
++ +A + + + GRSP+S+ AA+IYMAS +S KEI +A V++ TIR +YK
Sbjct: 265 VSSLLADRVTSMGDLAGRSPLSIVAASIYMASFLMGHGKSAKEISGVAHVSDGTIRGAYK 324
Query: 284 LMYPHASKLFPQDFV 298
+Y +L ++
Sbjct: 325 QLYAERERLIDPAWI 339
>gi|315055443|ref|XP_003177096.1| transcription initiation factor IIB [Arthroderma gypseum CBS
118893]
gi|311338942|gb|EFQ98144.1| transcription initiation factor IIB [Arthroderma gypseum CBS
118893]
Length = 352
Score = 213 bits (543), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 125/315 (39%), Positives = 179/315 (56%), Gaps = 29/315 (9%)
Query: 8 CYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNE-KSGVDPSRVGGPENP 66
C E+P + E + + IC CGLV+ DR ID SEWRTFSN+ ++ DPSRVG NP
Sbjct: 30 CKENPPNLVPESH---ETICGSCGLVLADREIDPHSEWRTFSNDDQNNDDPSRVGDASNP 86
Query: 67 LLNGSDLSTMIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADRINLTKT 126
LLNG+ L T I G G A + + Q++ + +++ALL A +EI S+ D N+ K
Sbjct: 87 LLNGNQLETQISFGTGGAR--SRELHRAQSKMSTEKTNKALLAAYKEIGSLCDGFNIQKN 144
Query: 127 IVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGR 186
+ D A LFK V D K KG+S D I + C++IACRQ VPRTF EI AV+++SKKEIGR
Sbjct: 145 VADTAKYLFKIVDDAKAFKGKSQDVIIAGCIFIACRQCKVPRTFTEIFAVTRVSKKEIGR 204
Query: 187 CFKLILK-----ALETSVDLITTG------------------DFMSRFCSNLSLPNMVQK 223
+K + K LE ++++G D +RFC+ L LP V
Sbjct: 205 IYKALEKFFTAQNLERINSVVSSGGVPDPNDAYTGTTSTKPSDLCNRFCNLLDLPFQVTN 264
Query: 224 AATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
++ +A + + + GRSP+S+ AA+IYMAS +S KEI +A V++ TIR +YK
Sbjct: 265 VSSLLADRVTSMGDLAGRSPLSIVAASIYMASFLMGHGKSAKEISGVAHVSDGTIRGAYK 324
Query: 284 LMYPHASKLFPQDFV 298
+Y +L ++
Sbjct: 325 QLYAERERLIDPAWI 339
>gi|302508303|ref|XP_003016112.1| hypothetical protein ARB_05509 [Arthroderma benhamiae CBS 112371]
gi|302659336|ref|XP_003021359.1| hypothetical protein TRV_04514 [Trichophyton verrucosum HKI 0517]
gi|291179681|gb|EFE35467.1| hypothetical protein ARB_05509 [Arthroderma benhamiae CBS 112371]
gi|291185255|gb|EFE40741.1| hypothetical protein TRV_04514 [Trichophyton verrucosum HKI 0517]
Length = 338
Score = 213 bits (543), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 125/315 (39%), Positives = 179/315 (56%), Gaps = 29/315 (9%)
Query: 8 CYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNE-KSGVDPSRVGGPENP 66
C E+P + E + + IC CGLV+ DR ID SEWRTFSN+ ++ DPSRVG NP
Sbjct: 16 CKENPPNLVPESH---ETICGSCGLVLADREIDPHSEWRTFSNDDQNNDDPSRVGDASNP 72
Query: 67 LLNGSDLSTMIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADRINLTKT 126
LLNG+ L T I G G A + + Q++ + +++ALL A +EI S+ D N+ K
Sbjct: 73 LLNGNQLETQISFGTGGAR--SRELHRAQSKMSTEKTNKALLAAYKEIGSLCDGFNIQKN 130
Query: 127 IVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGR 186
+ D A LFK V D K KG+S D I + C++IACRQ VPRTF EI AV+++SKKEIGR
Sbjct: 131 VADTAKYLFKIVDDAKAFKGKSQDVIIAGCIFIACRQCKVPRTFTEIFAVTRVSKKEIGR 190
Query: 187 CFKLILK-----ALETSVDLITTG------------------DFMSRFCSNLSLPNMVQK 223
+K + K LE ++++G D +RFC+ L LP V
Sbjct: 191 IYKALEKFFTAQNLERINSVVSSGGVPDPNDAYTGTTSTKPSDLCNRFCNLLDLPFQVTN 250
Query: 224 AATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
++ +A + + + GRSP+S+ AA+IYMAS +S KEI +A V++ TIR +YK
Sbjct: 251 VSSLLADRVTSMGDLAGRSPLSIVAASIYMASFLMGHGKSAKEISGVAHVSDGTIRGAYK 310
Query: 284 LMYPHASKLFPQDFV 298
+Y +L ++
Sbjct: 311 QLYAERERLIDPAWI 325
>gi|396491116|ref|XP_003843493.1| similar to transcription initiation factor iib [Leptosphaeria
maculans JN3]
gi|312220072|emb|CBY00014.1| similar to transcription initiation factor iib [Leptosphaeria
maculans JN3]
Length = 368
Score = 213 bits (543), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 123/327 (37%), Positives = 179/327 (54%), Gaps = 32/327 (9%)
Query: 1 MNINKVC--CYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVD-P 57
+N++ +C C E P L+E++ AGD IC CG V+ DR+ID SEWRTFSN+ G D P
Sbjct: 32 LNVHLICPDCQESP-PNLVEEFSAGDTICGSCGRVLADRIIDTRSEWRTFSNDDQGNDDP 90
Query: 58 SRVGGPENPLLNGSDLSTMIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSM 117
SR+G NPLL+GS L+T IG GD +S+ N+ + +++AL A +I+++
Sbjct: 91 SRIGDAANPLLHGSQLATEIG--FGDGGLRVRELSRAHNKSNHDKANKALQAAYGQISTL 148
Query: 118 ADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVS 177
D N+ KT + A LFK D K KG+S DAI + C++IACRQ R+F+EI ++
Sbjct: 149 CDSQNINKTTAETAKYLFKMTDDVKLFKGKSQDAIIAGCIFIACRQHRQQRSFREIFKMT 208
Query: 178 KISKKEIGRCFKLILKALET------------------SVDLITTGD--------FMSRF 211
+SKKE+GR FK + L+ + +L++T + M R
Sbjct: 209 NVSKKEVGRTFKALEAYLQKTQKEKTGPTVAGNGAVMDTTNLLSTDENRSTSAAMLMPRA 268
Query: 212 CSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIA 271
C+ L L VQ A A I GRSP+S+A A +Y+ S ++ KEIG
Sbjct: 269 CAKLGLGTNVQIVAEQCAEVVSREGIAAGRSPLSIAGACLYLVSHIMGHPKTPKEIGAAV 328
Query: 272 GVAEVTIRQSYKLMYPHASKLFPQDFV 298
V++ TIR +YKLM+ K+ QD+V
Sbjct: 329 EVSDGTIRTAYKLMFTAQDKIIQQDWV 355
>gi|344303899|gb|EGW34148.1| hypothetical protein SPAPADRAFT_59562 [Spathaspora passalidarum
NRRL Y-27907]
Length = 342
Score = 213 bits (542), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 121/311 (38%), Positives = 182/311 (58%), Gaps = 19/311 (6%)
Query: 1 MNINKVC--CYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNE-KSGVDP 57
+N+ VC C + P L+E + GD IC CGLV+ DR++D SEWRTF+N+ ++G DP
Sbjct: 15 LNVTLVCPDCRQFP-PDLVERFSEGDIICGNCGLVLSDRIVDTRSEWRTFNNDDQNGDDP 73
Query: 58 SRVGGPENPLLNGSDLSTMIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSM 117
SRVG NPLL+ DLSTMI + G +++ Q + ++ + AL A I +
Sbjct: 74 SRVGDSGNPLLDTEDLSTMISYVPQGGNRVGRDLTRIQQKSLVDKKNNALNAAYIRIQEL 133
Query: 118 ADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVS 177
+ L KT+ D A +L+K V + K L+G+S D+I +A + + CR+ VPRT +EI A++
Sbjct: 134 CNGYQLPKTVTDAAKHLYKAVREDKLLRGKSQDSIMAAVILLGCRRSDVPRTLEEIRALT 193
Query: 178 KISKKEIGRCFKLILKA-------------LETSVDLITTG--DFMSRFCSNLSLPNMVQ 222
+ K+I + +LI K LE + L T D + RFCS+L L V
Sbjct: 194 NVPSKQIAKVARLIKKIIHSHLVANPQSSILEETTSLTTHSAEDLIRRFCSHLGLTPQVT 253
Query: 223 KAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSY 282
AA HIAR+ ++ ++ GRSP ++AAAAIY+A +A + +Q++I D GV+ TI+ SY
Sbjct: 254 NAAEHIARQCKDIGVLAGRSPTTIAAAAIYLAGKAFDVELTQQQIRDKTGVSIGTIKTSY 313
Query: 283 KLMYPHASKLF 293
K+MY + KL
Sbjct: 314 KVMYENKDKLL 324
>gi|327307312|ref|XP_003238347.1| transcription initiation factor IIB [Trichophyton rubrum CBS
118892]
gi|326458603|gb|EGD84056.1| transcription initiation factor IIB [Trichophyton rubrum CBS
118892]
Length = 352
Score = 213 bits (542), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 125/315 (39%), Positives = 179/315 (56%), Gaps = 29/315 (9%)
Query: 8 CYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNE-KSGVDPSRVGGPENP 66
C E+P + E + + IC CGLV+ DR ID SEWRTFSN+ ++ DPSRVG NP
Sbjct: 30 CKENPPNLVPESH---ETICGSCGLVLADREIDPHSEWRTFSNDDQNNDDPSRVGDASNP 86
Query: 67 LLNGSDLSTMIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADRINLTKT 126
LLNG+ L T I G G A + + Q++ + +++ALL A +EI S+ D N+ K
Sbjct: 87 LLNGNQLETQISFGTGGAR--SRELHRAQSKMSTEKTNKALLAAYKEIGSLCDGFNIQKN 144
Query: 127 IVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGR 186
+ D A LFK V D K KG+S D I + C++IACRQ VPRTF EI AV+++SKKEIGR
Sbjct: 145 VADTAKYLFKIVDDAKAFKGKSQDVIIAGCIFIACRQCKVPRTFTEIFAVTRVSKKEIGR 204
Query: 187 CFKLILK-----ALETSVDLITTG------------------DFMSRFCSNLSLPNMVQK 223
+K + K LE ++++G D +RFC+ L LP V
Sbjct: 205 IYKALEKFFTAQNLERINSVVSSGGVPDPNDAYTGTTSTKPSDLCNRFCNLLDLPFQVTN 264
Query: 224 AATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
++ +A + + + GRSP+S+ AA+IYMAS +S KEI +A V++ TIR +YK
Sbjct: 265 VSSLLADRVTSMGDLAGRSPLSIVAASIYMASFLMGHGKSAKEISGVAHVSDGTIRGAYK 324
Query: 284 LMYPHASKLFPQDFV 298
+Y +L ++
Sbjct: 325 QLYAERERLIDPAWI 339
>gi|344304701|gb|EGW34933.1| hypothetical protein SPAPADRAFT_58062 [Spathaspora passalidarum
NRRL Y-27907]
Length = 347
Score = 213 bits (541), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 123/302 (40%), Positives = 177/302 (58%), Gaps = 25/302 (8%)
Query: 12 PDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNE-KSGVDPSRVGGPENPLLNG 70
PD LIE + GD +C CGLV+ DRV+D SEWRTFSN+ ++G DPSRVG NPLL+
Sbjct: 33 PD--LIERFSEGDIVCGSCGLVLSDRVVDTRSEWRTFSNDDQNGDDPSRVGDAGNPLLDT 90
Query: 71 SDLSTMIG--PGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADRINLTKTIV 128
DLSTMI P A G +++ + T++ D AL A ++I+ M + L K +
Sbjct: 91 EDLSTMISYVPENSRA---GRELNRAHQKNTVDKKDNALAAAYQKISQMCEGYQLPKIVQ 147
Query: 129 DRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGRCF 188
D A ++K VHD K L+G+S ++I +A ++I CR+ V R+FKEI A++ + +KEIG+ F
Sbjct: 148 DGAKEVYKMVHDEKPLRGKSQESIMAASIFIGCRKAKVARSFKEIWALTNVPRKEIGKVF 207
Query: 189 KLILK------------ALETSVDLITTG-----DFMSRFCSNLSLPNMVQKAATHIARK 231
K++ K A+ S D I T D + RFCS+L L V A +IAR+
Sbjct: 208 KIMDKVIREKNAANPTNAIYFSQDNIQTTQTSAEDLIRRFCSHLGLHTQVTNGAEYIARR 267
Query: 232 AVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASK 291
E+ ++ GRSP ++AA IYMA+ + +I D GV++ TI+ SYK+MY K
Sbjct: 268 CKEVGVLAGRSPTTIAATVIYMAALVFGADLAPSKISDKTGVSDGTIKTSYKVMYEEREK 327
Query: 292 LF 293
L
Sbjct: 328 LI 329
>gi|299748194|ref|XP_002911260.1| transcription initiation factor IIB [Coprinopsis cinerea
okayama7#130]
gi|298407858|gb|EFI27766.1| transcription initiation factor IIB [Coprinopsis cinerea
okayama7#130]
Length = 346
Score = 213 bits (541), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 115/296 (38%), Positives = 177/296 (59%), Gaps = 10/296 (3%)
Query: 12 PDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGS 71
P+ ++E++ +GD +C CGLV+GDRVID SEWRTF+N++ G DPSRVG +PLL G
Sbjct: 36 PNPNIVEEFGSGDLVCGNCGLVLGDRVIDTRSEWRTFANDE-GDDPSRVGAASDPLLEGI 94
Query: 72 DLSTMIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADRINLTKTIVDRA 131
+ + R S + + +R N S+R LL A R+I++ D+ +L KTI D A
Sbjct: 95 EQLDTVISFRDGGSGIARELQRAASRSQNNRSERNLLTAFRDISNWCDQFSLPKTISDIA 154
Query: 132 NNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGRCFKLI 191
L+K+ + K L+G+ +A+ +AC++IACR+ VPRTF+EIC ++++SKK +G+C+K +
Sbjct: 155 KQLYKRADEEKLLRGKPVEAVIAACIFIACRKAHVPRTFREICNLTRVSKKMLGQCYKAL 214
Query: 192 LKALETS-------VDLITTG--DFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRS 242
++L S + TTG + R+C++L LP VQ + I A I GRS
Sbjct: 215 EQSLNLSGPESMPLANTPTTGPEKLLVRYCNHLDLPANVQAICSEIIVNARNHGIADGRS 274
Query: 243 PISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKLFPQDFV 298
PIS+A AIY + +EI +AGV+E TI+ Y+L Y KL ++++
Sbjct: 275 PISIAGGAIYFTCLLLGKPKPIREISAVAGVSEGTIKLVYRLYYNDREKLVKKEWI 330
>gi|169863349|ref|XP_001838296.1| transcription initiation factor IIB [Coprinopsis cinerea
okayama7#130]
gi|116500589|gb|EAU83484.1| transcription initiation factor IIB [Coprinopsis cinerea
okayama7#130]
Length = 340
Score = 213 bits (541), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 108/289 (37%), Positives = 175/289 (60%), Gaps = 3/289 (1%)
Query: 12 PDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGS 71
P+ ++E++ +GD +C CGLV+GDRV+D SEWRTF+N++ G DPSRVG +PL++G
Sbjct: 38 PNPQIVEEFASGDLVCGNCGLVLGDRVVDTRSEWRTFANDE-GDDPSRVGAASDPLMDGM 96
Query: 72 DLSTMIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADRINLTKTIVDRA 131
+ + R S + + +R + ++R LL A R+I++ D+ +L KTI D A
Sbjct: 97 EQLDTVISFRDGGSGISRELQRAASRAQSSRTERNLLTAFRDISNWCDQFSLPKTISDIA 156
Query: 132 NNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGRCFKLI 191
L+K+ + K L+G+ +A+ +AC++IACRQ VPR+FK+IC+++ +SKK +G+C+K++
Sbjct: 157 KQLYKRTDEEKLLRGKPLEAVIAACIFIACRQAHVPRSFKDICSLTHVSKKMLGQCYKVL 216
Query: 192 LKALETSVDLITTG--DFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAA 249
+A ++G F+ R+C+ L LP VQ + A E I RSP+S+A
Sbjct: 217 ERAFTQVGAAPSSGPEGFLVRYCNYLDLPPNVQGICRDVIVAAREHGIADSRSPLSIAGG 276
Query: 250 AIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKLFPQDFV 298
AIY R+ +EI +AGV E TI+ Y+L Y KL ++++
Sbjct: 277 AIYFCCMLLGHTRTLREISQVAGVTETTIQSVYRLYYFEKEKLVKKEWL 325
>gi|448082287|ref|XP_004195101.1| Piso0_005644 [Millerozyma farinosa CBS 7064]
gi|359376523|emb|CCE87105.1| Piso0_005644 [Millerozyma farinosa CBS 7064]
Length = 350
Score = 212 bits (540), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 118/319 (36%), Positives = 186/319 (58%), Gaps = 25/319 (7%)
Query: 1 MNINKVC--CYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNE-KSGVDP 57
+NI C C +P LIE + GD +C CGLV+ DRV+D SEWRTFSN+ ++G DP
Sbjct: 23 LNITLTCPECKIYP-PDLIERFSEGDIVCGSCGLVLSDRVVDTRSEWRTFSNDDQNGDDP 81
Query: 58 SRVGGPENPLLNGSDLSTMIG--PGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREIN 115
SRVG NPLL+ DLSTMI P D + G +++ Q++ ++ D AL A +I+
Sbjct: 82 SRVGDAGNPLLDSEDLSTMISYVP---DNTKAGRELNRAQSKSLVDKKDNALAAAYAKIS 138
Query: 116 SMADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICA 175
M D L + + D A ++K V++ + L+G+S ++I +A ++I CR+ GV R+FKEI A
Sbjct: 139 QMCDGYQLPRIVQDSAKEVYKLVYEERPLRGKSQESIMAAAIFIGCRKAGVARSFKEIWA 198
Query: 176 VSKISKKEIGRCFKLILKALE----------------TSVDLITTGDFMSRFCSNLSLPN 219
++ + +KEIG+ FK++++ + + D + RFCS+L L
Sbjct: 199 LTNVPRKEIGKVFKIMIRIVREKNESDPNAHSLIQDNMQTSQTSAEDLIRRFCSHLGLNT 258
Query: 220 MVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIR 279
+ AA +IAR+ ++ ++ GRSPI++AA IYMA+ ++ +I D GV++ TI+
Sbjct: 259 QITNAAEYIARRCKDVGVLAGRSPITIAATVIYMAALIFGNELQPSKIADKTGVSDGTIK 318
Query: 280 QSYKLMYPHASKLFPQDFV 298
SYK++Y KL +V
Sbjct: 319 TSYKVLYEEKEKLVDPYWV 337
>gi|146422766|ref|XP_001487318.1| hypothetical protein PGUG_00695 [Meyerozyma guilliermondii ATCC
6260]
Length = 339
Score = 212 bits (540), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 120/312 (38%), Positives = 181/312 (58%), Gaps = 23/312 (7%)
Query: 1 MNINKVC--CYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNE-KSGVDP 57
+N+ C C +P LIE + GD +C CGLV+ DRV+D SEWRTFSN+ ++G DP
Sbjct: 19 LNVTLSCPECKTYP-PDLIERFSEGDIVCGTCGLVLSDRVVDTRSEWRTFSNDDRNGEDP 77
Query: 58 SRVGGPENPLLNGSDLSTMIG--PGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREIN 115
+RVG NPLL+ DLSTMI P G A G +S+ Q + ++ D +L+ A +I+
Sbjct: 78 NRVGDASNPLLDSEDLSTMISYVPNDGRA---GRDLSRAQLKSAIDRKDSSLVAAYSKIS 134
Query: 116 SMADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICA 175
M + L + + D + ++K VHD K L+G+S ++I +A + + CR+ V R+F EI A
Sbjct: 135 HMCEGYQLPRVVQDASKEIYKLVHDEKRLRGKSQESIMAASICLGCRKANVGRSFLEIAA 194
Query: 176 VSKISKKEIGRCFKLILKALETS--------------VDLITTGDFMSRFCSNLSLPNMV 221
++ + KKE+GR FK +++ L+ V + D + RFCS+L L +
Sbjct: 195 LTNVPKKELGRVFKTMIQLLQEKHSNNPDVMHMTQQPVSSTSAEDLIRRFCSHLGLSTQI 254
Query: 222 QKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQS 281
AA +IAR+ + I+ GRSPI+VAA IYMAS + S I D AGV++ TI+ S
Sbjct: 255 SNAAEYIARRCKDEQILSGRSPITVAATVIYMASLIFNVDVSPARIADKAGVSDGTIKTS 314
Query: 282 YKLMYPHASKLF 293
YK+++ K+
Sbjct: 315 YKVLFEEKDKIL 326
>gi|448086815|ref|XP_004196195.1| Piso0_005644 [Millerozyma farinosa CBS 7064]
gi|359377617|emb|CCE86000.1| Piso0_005644 [Millerozyma farinosa CBS 7064]
Length = 350
Score = 212 bits (540), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 117/313 (37%), Positives = 184/313 (58%), Gaps = 25/313 (7%)
Query: 1 MNINKVC--CYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNE-KSGVDP 57
+NI C C +P LIE + GD +C CGLV+ DRV+D SEWRTFSN+ ++G DP
Sbjct: 23 LNITLTCPECKIYP-PDLIERFSEGDIVCGSCGLVLSDRVVDTRSEWRTFSNDDQNGDDP 81
Query: 58 SRVGGPENPLLNGSDLSTMIG--PGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREIN 115
SRVG NPLL+ DLSTMI P D + G +++ Q++ ++ D AL A +I+
Sbjct: 82 SRVGDAGNPLLDSEDLSTMISYVP---DNTKVGRELNRAQSKSLVDKKDNALAAAYSKIS 138
Query: 116 SMADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICA 175
M D L + + D A ++K V++ + L+G+S ++I +A ++I CR+ GV R+FKEI A
Sbjct: 139 QMCDGYQLPRIVQDSAKEVYKLVYEERPLRGKSQESIMAAAIFIGCRKAGVARSFKEIWA 198
Query: 176 VSKISKKEIGRCFKLILKALE----------------TSVDLITTGDFMSRFCSNLSLPN 219
++ + +KEIG+ FK++++ + + D + RFCS+L L
Sbjct: 199 LTNVPRKEIGKVFKIMIRIVREKNESDPNAHSLIQDNMQTSQTSAEDLIRRFCSHLGLNT 258
Query: 220 MVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIR 279
+ AA +IAR+ ++ ++ GRSPI++AA IYMA+ ++ +I D GV++ TI+
Sbjct: 259 QITNAAEYIARRCKDVGVLAGRSPITIAATVIYMAALIFGNELQPSKIADKTGVSDGTIK 318
Query: 280 QSYKLMYPHASKL 292
SYK++Y KL
Sbjct: 319 TSYKVLYEEKEKL 331
>gi|145232671|ref|XP_001399760.1| transcription initiation factor IIB [Aspergillus niger CBS 513.88]
gi|134056679|emb|CAK37672.1| unnamed protein product [Aspergillus niger]
gi|358365509|dbj|GAA82131.1| transcription initiation protein [Aspergillus kawachii IFO 4308]
Length = 351
Score = 212 bits (540), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 122/315 (38%), Positives = 179/315 (56%), Gaps = 29/315 (9%)
Query: 8 CYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNE-KSGVDPSRVGGPENP 66
C E P P +E + + +C CGLV+ DR ID+ SEWRTFSN+ ++ DPSRVG NP
Sbjct: 29 CKEVP--PNLEFPGSHETVCGSCGLVLADREIDMHSEWRTFSNDDQNNDDPSRVGDAMNP 86
Query: 67 LLNGSDLSTMIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADRINLTKT 126
LLNG L T I G D + + QN+++ +++ALL A +EI ++ D N+ K
Sbjct: 87 LLNGDQLETQIASGGSGRVRD---LYRAQNKQSSEKANKALLAAYKEIGALCDGFNIQKN 143
Query: 127 IVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGR 186
+ D A LFK V D K KG+S D I + C++IACRQ VPRTF EI AV+K+++KEIGR
Sbjct: 144 VADTAKYLFKIVDDAKAFKGKSQDVIIAGCIFIACRQCKVPRTFTEIFAVTKVTRKEIGR 203
Query: 187 CFKLILK-----ALETSVDLITTG------------------DFMSRFCSNLSLPNMVQK 223
+K + K LE ++++G D +RFC+ L LP V
Sbjct: 204 IYKALEKFFTAQNLERINAVVSSGGVPDPNDTYTATTSTKPSDLCNRFCNLLDLPFQVTS 263
Query: 224 AATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
++ ++ + + + GRSP+S+ AA IYMAS +S KEI +A V++ TIR +YK
Sbjct: 264 VSSALSDRVTTMGDLAGRSPLSIVAACIYMASYLMGHGKSAKEISQVAHVSDGTIRGAYK 323
Query: 284 LMYPHASKLFPQDFV 298
+Y +L +++
Sbjct: 324 QLYAERERLIDPEWI 338
>gi|350634612|gb|EHA22974.1| hypothetical protein ASPNIDRAFT_206867 [Aspergillus niger ATCC
1015]
Length = 351
Score = 212 bits (539), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 122/315 (38%), Positives = 179/315 (56%), Gaps = 29/315 (9%)
Query: 8 CYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNE-KSGVDPSRVGGPENP 66
C E P P +E + + +C CGLV+ DR ID+ SEWRTFSN+ ++ DPSRVG NP
Sbjct: 29 CKEVP--PNLEFPGSHETVCGSCGLVLADREIDMHSEWRTFSNDDQNNDDPSRVGDAMNP 86
Query: 67 LLNGSDLSTMIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADRINLTKT 126
LLNG L T I G D + + QN+++ +++ALL A +EI ++ D N+ K
Sbjct: 87 LLNGDQLETQIASGGSGRVRD---LYRAQNKQSSEKANKALLAAYKEIGALCDGFNIQKN 143
Query: 127 IVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGR 186
+ D A LFK V D K KG+S D I + C++IACRQ VPRTF EI AV+K+++KEIGR
Sbjct: 144 VADTAKYLFKIVDDAKAFKGKSQDVIIAGCIFIACRQCKVPRTFTEIFAVTKVTRKEIGR 203
Query: 187 CFKLILK-----ALETSVDLITTG------------------DFMSRFCSNLSLPNMVQK 223
+K + K LE ++++G D +RFC+ L LP V
Sbjct: 204 IYKALEKFFTAQNLERINAVVSSGGVPDPNDTYTATTSTKPSDLCNRFCNLLDLPFQVTS 263
Query: 224 AATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
++ ++ + + + GRSP+S+ AA IYMAS +S KEI +A V++ TIR +YK
Sbjct: 264 VSSALSDRVTTMGDLAGRSPLSIVAACIYMASYLMGHGKSAKEISHVAHVSDGTIRGAYK 323
Query: 284 LMYPHASKLFPQDFV 298
+Y +L +++
Sbjct: 324 QLYAERERLIDPEWI 338
>gi|70999680|ref|XP_754557.1| transcription initiation protein [Aspergillus fumigatus Af293]
gi|66852194|gb|EAL92519.1| transcription initiation protein [Aspergillus fumigatus Af293]
gi|159127570|gb|EDP52685.1| transcription initiation protein [Aspergillus fumigatus A1163]
Length = 422
Score = 211 bits (538), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 121/315 (38%), Positives = 179/315 (56%), Gaps = 29/315 (9%)
Query: 8 CYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNE-KSGVDPSRVGGPENP 66
C E P P +E + + +C CGLV+ DR ID+ SEWRTFSN+ ++ DPSRVG NP
Sbjct: 100 CREVP--PNLEFPDSHETVCGSCGLVLADREIDMHSEWRTFSNDDQNNDDPSRVGDATNP 157
Query: 67 LLNGSDLSTMIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADRINLTKT 126
LLNG L T I G S + + QN+++ +++ALL A +EI ++ D N+ K
Sbjct: 158 LLNGDQLETQIASG---GSGRARELYRAQNKQSSEKANKALLAAYKEIGALCDGFNIQKN 214
Query: 127 IVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGR 186
+ D A LFK V D K KG+S + I + C++IACRQ VPRTF EI AV+K+++KEIGR
Sbjct: 215 VADTAKYLFKIVDDAKAFKGKSQEVIIAGCIFIACRQCKVPRTFTEIFAVTKVTRKEIGR 274
Query: 187 CFKLILK-----ALETSVDLITTG------------------DFMSRFCSNLSLPNMVQK 223
+K + K LE ++++G D +RFC+ L LP V
Sbjct: 275 IYKALEKFFTAQNLERINAVVSSGGVPDPNDTYTATTSTKPSDLCNRFCNLLDLPYQVTS 334
Query: 224 AATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
++ ++ + + + GRSP+S+ AA IYMAS +S KEI +A V++ TIR +YK
Sbjct: 335 VSSALSDRVTTMGDLAGRSPLSIVAACIYMASYLMGHGKSAKEISQVAHVSDGTIRGAYK 394
Query: 284 LMYPHASKLFPQDFV 298
+Y +L +++
Sbjct: 395 QLYAERERLIDPEWI 409
>gi|119491805|ref|XP_001263397.1| transcription initiation protein [Neosartorya fischeri NRRL 181]
gi|119411557|gb|EAW21500.1| transcription initiation protein [Neosartorya fischeri NRRL 181]
Length = 350
Score = 211 bits (538), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 121/315 (38%), Positives = 179/315 (56%), Gaps = 29/315 (9%)
Query: 8 CYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNE-KSGVDPSRVGGPENP 66
C E P P +E + + +C CGLV+ DR ID+ SEWRTFSN+ ++ DPSRVG NP
Sbjct: 28 CREVP--PNLEFPDSHETVCGSCGLVLADREIDMHSEWRTFSNDDQNNDDPSRVGDATNP 85
Query: 67 LLNGSDLSTMIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADRINLTKT 126
LLNG L T I G S + + QN+++ +++ALL A +EI ++ D N+ K
Sbjct: 86 LLNGDQLETQIASG---GSGRARELYRAQNKQSSEKANKALLAAYKEIGALCDGFNIQKN 142
Query: 127 IVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGR 186
+ D A LFK V D K KG+S + I + C++IACRQ VPRTF EI AV+K+++KEIGR
Sbjct: 143 VADTAKYLFKIVDDAKAFKGKSQEVIIAGCIFIACRQCKVPRTFTEIFAVTKVTRKEIGR 202
Query: 187 CFKLILK-----ALETSVDLITTG------------------DFMSRFCSNLSLPNMVQK 223
+K + K LE ++++G D +RFC+ L LP V
Sbjct: 203 IYKALEKFFTAQNLERINAVVSSGGVPDPNDTYTATTSTKPSDLCNRFCNLLDLPYQVTS 262
Query: 224 AATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
++ ++ + + + GRSP+S+ AA IYMAS +S KEI +A V++ TIR +YK
Sbjct: 263 VSSALSDRVTTMGDLAGRSPLSIVAACIYMASYLMGHGKSAKEISQVAHVSDGTIRGAYK 322
Query: 284 LMYPHASKLFPQDFV 298
+Y +L +++
Sbjct: 323 QLYAERERLIDPEWI 337
>gi|407927206|gb|EKG20106.1| Transcription factor TFIIB [Macrophomina phaseolina MS6]
Length = 355
Score = 211 bits (537), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 122/322 (37%), Positives = 180/322 (55%), Gaps = 28/322 (8%)
Query: 1 MNINKVC--CYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNE-KSGVDP 57
NI+ +C C E P LIE++ +GD +C CGLV+ RV+D SEWRTFSN+ ++G DP
Sbjct: 25 FNIHMICPDCKEQP-PNLIEEFSSGDTVCGSCGLVLSARVVDTRSEWRTFSNDDQNGDDP 83
Query: 58 SRVGGPENPLLNGSDLSTMIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSM 117
SRVG NPLLNGS L+T I G S + +++ QN+ + S+++L+ A + I
Sbjct: 84 SRVGDAANPLLNGSQLATNISYTDGAKSRE---LNRAQNKSGTDKSNKSLMQAYKLIGQW 140
Query: 118 ADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVS 177
DR L T+ D A +++K D K KG++ ++I + CL++ACRQ R+F+E+ ++
Sbjct: 141 CDRWLLPHTVSDTAKHMYKMTDDSKGFKGKALESIVAGCLFLACRQAQQGRSFRELHELT 200
Query: 178 KISKKEIGRCFKLILKALET---------SVDLITTGD------------FMSRFCSNLS 216
+SKKEIGR FK + K + L+ GD +R+C+ L
Sbjct: 201 GVSKKEIGRIFKSLDKFFNAQNRSGNILGNGGLVMAGDAYKSKEATSPPELCARYCNQLG 260
Query: 217 LPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEV 276
L N VQ A +A + V+ + GRSP+S AA IYM S + KEI +AGV++
Sbjct: 261 LDNRVQMLAQRLAEEMVKQGALAGRSPLSAVAACIYMISHLVEQPLTPKEIAPVAGVSDG 320
Query: 277 TIRQSYKLMYPHASKLFPQDFV 298
TIR +YK +Y KL +V
Sbjct: 321 TIRTAYKHLYAAKDKLLDPAWV 342
>gi|50422739|ref|XP_459946.1| DEHA2E14762p [Debaryomyces hansenii CBS767]
gi|49655614|emb|CAG88192.1| DEHA2E14762p [Debaryomyces hansenii CBS767]
Length = 346
Score = 211 bits (536), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 121/317 (38%), Positives = 183/317 (57%), Gaps = 21/317 (6%)
Query: 1 MNINKVC--CYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNE-KSGVDP 57
+NI C C P LIE + GD +C CGLV+ DRV+D SEWRTFSN+ ++G DP
Sbjct: 19 LNITLTCPECKIFP-PDLIERFSEGDIVCGSCGLVLSDRVVDTRSEWRTFSNDDQNGDDP 77
Query: 58 SRVGGPENPLLNGSDLSTMIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSM 117
SRVG NPLL+ DLSTMI + G +++ Q++ ++ D AL A +++ M
Sbjct: 78 SRVGDAGNPLLDTEDLSTMISYVPENTKV-GRELNRAQSKSLVDKKDNALAAAYSKLSQM 136
Query: 118 ADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVS 177
D L K + D A ++K V++ + LKG+S ++I +A ++I CR+ V R+FKEI A++
Sbjct: 137 CDGYQLPKIVQDGAKEVYKLVYEERPLKGKSQESIMAAAIFIGCRKAKVARSFKEIWALT 196
Query: 178 KISKKEIGRCFKLILKALE-------TSVDLI---------TTGDFMSRFCSNLSLPNMV 221
+ +KEIG+ FK++ K ++ + LI + D + RFCS+L L V
Sbjct: 197 NVPRKEIGKVFKIMNKIIQEKNAANPNAYSLIQDNMQTTQTSAEDLIRRFCSHLGLSTQV 256
Query: 222 QKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQS 281
AA HIAR+ ++ ++ GRSPI++AA IYMA+ +I D GV++ TI+ S
Sbjct: 257 TNAAEHIARRCKDVGVLAGRSPITIAATVIYMAALVFGADLQPSKIADKTGVSDGTIKTS 316
Query: 282 YKLMYPHASKLFPQDFV 298
YK+MY +L +V
Sbjct: 317 YKVMYEEKERLIDPYWV 333
>gi|449297000|gb|EMC93019.1| hypothetical protein BAUCODRAFT_270595 [Baudoinia compniacensis
UAMH 10762]
Length = 360
Score = 210 bits (535), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 115/325 (35%), Positives = 185/325 (56%), Gaps = 31/325 (9%)
Query: 2 NIN-KVCCYEHPDAP--LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVD-P 57
N+N K+ C + D P L ED+ +GD +C+ CGLV+ R ID+GSEWRTFSN+ G D P
Sbjct: 26 NLNVKMMCKDCRDDPPELYEDHASGDLMCANCGLVLAQRTIDMGSEWRTFSNDDQGNDDP 85
Query: 58 SRVGGPENPLLNGSDLSTMIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSM 117
SRVG N LLNG+ L T I G G S + + + QN+ M+ +++ LL A ++I ++
Sbjct: 86 SRVGEGPNTLLNGAQLETGIAFGDGIRSRE---LHRAQNKSNMDKTNKGLLQAYKQIGAL 142
Query: 118 ADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVS 177
D L ++ D A +L+K + + +G+S +A+ + C+++ACR+ VPR+F+E+ ++
Sbjct: 143 CDGWQLPSSVSDTAKHLYKDADESRLFRGKSQEALIAGCVFLACRRNNVPRSFREVMELT 202
Query: 178 KISKKEIGRCFKLI-------LKALETSVDLITTGDFMS-----------------RFCS 213
K+SKKEIGR FKL+ K + V + G +S RFC+
Sbjct: 203 KVSKKEIGRTFKLLEQFYMKNTKLAKNGVSTVAGGQLVSNEAYTGSQNSNPAELCDRFCN 262
Query: 214 NLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGV 273
L + + +A++ ++ GRSP+S A A IYMAS + ++ K+I + A V
Sbjct: 263 ALGMSRTASNVSIALAQRMTATGVLAGRSPLSSAGACIYMASYLMGEPKNPKDISNAAHV 322
Query: 274 AEVTIRQSYKLMYPHASKLFPQDFV 298
++ TIR +YK++Y K+ +D +
Sbjct: 323 SDSTIRHAYKILYQDKEKIITEDIL 347
>gi|452839736|gb|EME41675.1| hypothetical protein DOTSEDRAFT_135117 [Dothistroma septosporum
NZE10]
Length = 358
Score = 210 bits (535), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 118/322 (36%), Positives = 183/322 (56%), Gaps = 27/322 (8%)
Query: 1 MNINKVCCYEHPDAP-LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVD-PS 58
+N+ C D P L ED+ +GD IC+ECGLV+ +R ID SEWRTFSN+ G D PS
Sbjct: 27 LNVRLTCKDCRTDPPELYEDHASGDLICAECGLVLQERGIDTSSEWRTFSNDDQGNDDPS 86
Query: 59 RVGGPENPLLNGSDLSTMIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMA 118
RVG N LLNG+ L+T I G G S + + + QN+ ++ ++ LL A ++I ++
Sbjct: 87 RVGDGPNALLNGAQLNTSIAFGDGIRSKE---LHRAQNKSNLDKGNKTLLVAYKQIGALC 143
Query: 119 DRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSK 178
D +L + D A +L+K + + KG+S +A+ + C+++ACR+ VPR+F+E+ ++K
Sbjct: 144 DNWDLPSMVSDTAKHLYKDADESRVFKGKSQEALIAGCVFLACRRNNVPRSFREVMELTK 203
Query: 179 ISKKEIGRCFK-----LILKALETSVDLITTG-----------------DFMSRFCSNLS 216
+SKKEIGR FK L+ K E + TG + +R+C+ LS
Sbjct: 204 VSKKEIGRTFKMLETFLMGKEKERQANGTNTGTVVFNDAYKGSTTSDPSEMCARWCNMLS 263
Query: 217 LPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEV 276
+ A IA + + GRSP+S AAA IYMA + ++ KE+ ++A V++
Sbjct: 264 MSQQASNVAIGIASNMTKSGALAGRSPLSAAAACIYMAGHLMDEIKTAKEVQNVAKVSDS 323
Query: 277 TIRQSYKLMYPHASKLFPQDFV 298
TIR +YKL++ +KL +D V
Sbjct: 324 TIRHAYKLLWNDRNKLITEDIV 345
>gi|241948569|ref|XP_002417007.1| general transcription factor TFIIB, putative; transcription factor
E, putative; transcription initiation factor IIB,
putative [Candida dubliniensis CD36]
gi|223640345|emb|CAX44595.1| general transcription factor TFIIB, putative [Candida dubliniensis
CD36]
Length = 344
Score = 210 bits (534), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 120/317 (37%), Positives = 181/317 (57%), Gaps = 21/317 (6%)
Query: 1 MNINKVC--CYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNE-KSGVDP 57
+N+ C C P L+E + GD +C CGLV+ DRV+D SEWRTFSN+ ++G DP
Sbjct: 17 LNVTLTCPECKIFP-PDLVERFSEGDIVCGSCGLVLSDRVVDTRSEWRTFSNDDQNGDDP 75
Query: 58 SRVGGPENPLLNGSDLSTMIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSM 117
SRVG NPLL+ DLSTMI D++ G +++ Q++ ++ D AL A +I+ M
Sbjct: 76 SRVGDAGNPLLDTEDLSTMISYA-PDSTKAGRELNRAQSKSLVDKKDNALAAAYIKISQM 134
Query: 118 ADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVS 177
D L K + D A ++K V+D K L+G+S ++I +A ++I CR+ V R+FKEI A++
Sbjct: 135 CDGYQLPKIVSDGAKEVYKMVYDEKPLRGKSQESIMAASIFIGCRKANVARSFKEIWALT 194
Query: 178 KISKKEIGRCFKLILKAL--------------ETSVDLITTG--DFMSRFCSNLSLPNMV 221
+ +KEIG+ FK++ K + + S+ T D + RFCS+L + V
Sbjct: 195 NVPRKEIGKVFKIMDKIIREKNAANPNAAYYGQDSIQTTQTSAEDLIRRFCSHLGVNTQV 254
Query: 222 QKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQS 281
A +IAR+ E+ ++ GRSP ++AA IYMAS +I D GV++ TI+ S
Sbjct: 255 TNGAEYIARRCKEVGVLAGRSPTTIAATVIYMASLVFGFDLPPSKISDKTGVSDGTIKTS 314
Query: 282 YKLMYPHASKLFPQDFV 298
YK MY KL ++
Sbjct: 315 YKYMYEEKEKLIDPSWI 331
>gi|68468997|ref|XP_721557.1| likely transcription factor TFIIB [Candida albicans SC5314]
gi|68469546|ref|XP_721286.1| likely transcription factor TFIIB [Candida albicans SC5314]
gi|46443195|gb|EAL02479.1| likely transcription factor TFIIB [Candida albicans SC5314]
gi|46443477|gb|EAL02759.1| likely transcription factor TFIIB [Candida albicans SC5314]
Length = 344
Score = 210 bits (534), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 120/317 (37%), Positives = 181/317 (57%), Gaps = 21/317 (6%)
Query: 1 MNINKVC--CYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNE-KSGVDP 57
+N+ C C P L+E + GD +C CGLV+ DRV+D SEWRTFSN+ ++G DP
Sbjct: 17 LNVTLTCPECKIFP-PDLVERFSEGDIVCGSCGLVLSDRVVDTRSEWRTFSNDDQNGDDP 75
Query: 58 SRVGGPENPLLNGSDLSTMIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSM 117
SRVG NPLL+ DLSTMI D++ G +S+ Q++ ++ D AL A +I+ M
Sbjct: 76 SRVGDAGNPLLDTEDLSTMISYA-PDSTKAGRELSRAQSKSLVDKKDNALAAAYIKISQM 134
Query: 118 ADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVS 177
D L K + D A ++K V+D K L+G+S ++I +A ++I CR+ V R+FKEI A++
Sbjct: 135 CDGYQLPKIVSDGAKEVYKMVYDEKPLRGKSQESIMAASIFIGCRKANVARSFKEIWALT 194
Query: 178 KISKKEIGRCFKLILKAL--------------ETSVDLITTG--DFMSRFCSNLSLPNMV 221
+ +KEIG+ FK++ K + + S+ T D + RFCS+L + V
Sbjct: 195 NVPRKEIGKVFKIMDKIIREKNAANPNAAYYGQDSIQTTQTSAEDLIRRFCSHLGVNTQV 254
Query: 222 QKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQS 281
A +IAR+ E+ ++ GRSP ++AA IYMAS +I D GV++ TI+ S
Sbjct: 255 TNGAEYIARRCKEVGVLAGRSPTTIAATVIYMASLVFGFDLPPSKISDKTGVSDGTIKTS 314
Query: 282 YKLMYPHASKLFPQDFV 298
YK MY +L ++
Sbjct: 315 YKYMYEEKEQLIDPSWI 331
>gi|169770601|ref|XP_001819770.1| transcription initiation factor IIB [Aspergillus oryzae RIB40]
gi|238486960|ref|XP_002374718.1| transcription initiation protein [Aspergillus flavus NRRL3357]
gi|83767629|dbj|BAE57768.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|220699597|gb|EED55936.1| transcription initiation protein [Aspergillus flavus NRRL3357]
gi|391867301|gb|EIT76547.1| transcription initiation factor TFIIB [Aspergillus oryzae 3.042]
Length = 350
Score = 209 bits (533), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 120/315 (38%), Positives = 179/315 (56%), Gaps = 29/315 (9%)
Query: 8 CYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNE-KSGVDPSRVGGPENP 66
C E P P +E + + +C CGLV+ DR ID+ SEWRTFSN+ ++ DPSRVG NP
Sbjct: 28 CKEVP--PNLEFPGSHETVCGSCGLVLADREIDMHSEWRTFSNDDQNNDDPSRVGDASNP 85
Query: 67 LLNGSDLSTMIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADRINLTKT 126
LLNG L T I G D + + QN+++ ++++LL A +EI ++ D ++ K
Sbjct: 86 LLNGDQLETQIASGGSGRVRD---LYRAQNKQSSEKANKSLLAAYKEIGALCDGFSIQKN 142
Query: 127 IVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGR 186
+ D A LFK V D K KG+S D I + C++IACRQ VPRTF EI AV+K+S+KEIGR
Sbjct: 143 VADTAKYLFKIVDDAKAFKGKSQDVIIAGCIFIACRQCKVPRTFTEIFAVTKVSRKEIGR 202
Query: 187 CFKLILK-----ALETSVDLITTG------------------DFMSRFCSNLSLPNMVQK 223
+K + K LE + +++ G D +RFC+ L LP V
Sbjct: 203 IYKALEKFFTAQNLERNNAVVSNGGVPDPNDTYTATTSTKPSDLCNRFCNLLDLPFQVTS 262
Query: 224 AATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
++ ++ + + + GRSP+S+ AA IYMAS ++ KEI +A V++ TIR +YK
Sbjct: 263 VSSALSDRVTTMGDLAGRSPLSIVAACIYMASYLMGHGKTAKEISQVAHVSDGTIRGAYK 322
Query: 284 LMYPHASKLFPQDFV 298
+Y +L +++
Sbjct: 323 QLYAERERLIDPEWI 337
>gi|238879169|gb|EEQ42807.1| transcription initiation factor IIB [Candida albicans WO-1]
Length = 344
Score = 209 bits (533), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 120/312 (38%), Positives = 179/312 (57%), Gaps = 21/312 (6%)
Query: 1 MNINKVC--CYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNE-KSGVDP 57
+N+ C C P L+E + GD +C CGLV+ DRV+D SEWRTFSN+ ++G DP
Sbjct: 17 LNVTLTCPECKIFP-PDLVERFSEGDIVCGSCGLVLSDRVVDTRSEWRTFSNDDQNGDDP 75
Query: 58 SRVGGPENPLLNGSDLSTMIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSM 117
SRVG NPLL+ DLSTMI D++ G +S+ Q++ ++ D AL A +I+ M
Sbjct: 76 SRVGDAGNPLLDTEDLSTMISYA-PDSTKAGRELSRAQSKSLVDKKDNALAAAYIKISQM 134
Query: 118 ADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVS 177
D L K + D A ++K V+D K L+G+S ++I +A ++I CR+ V R+FKEI A++
Sbjct: 135 CDGYQLPKIVSDGAKEVYKMVYDEKPLRGKSQESIMAASIFIGCRKANVARSFKEIWALT 194
Query: 178 KISKKEIGRCFKLILKAL--------------ETSVDLITTG--DFMSRFCSNLSLPNMV 221
+ +KEIG+ FK++ K + + S+ T D + RFCS+L + V
Sbjct: 195 NVPRKEIGKVFKIMDKIIREKNAANPNAAYYGQDSIQTTQTSAEDLIRRFCSHLGVNTQV 254
Query: 222 QKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQS 281
A +IAR+ E+ ++ GRSP ++AA IYMAS +I D GV++ TI+ S
Sbjct: 255 TNGAEYIARRCKEVGVLAGRSPTTIAATVIYMASLVFGFDLPPSKISDKTGVSDGTIKTS 314
Query: 282 YKLMYPHASKLF 293
YK MY +L
Sbjct: 315 YKYMYEEKEQLI 326
>gi|67537516|ref|XP_662532.1| hypothetical protein AN4928.2 [Aspergillus nidulans FGSC A4]
gi|40741816|gb|EAA61006.1| hypothetical protein AN4928.2 [Aspergillus nidulans FGSC A4]
gi|259482202|tpe|CBF76459.1| TPA: transcription initiation protein (AFU_orthologue;
AFUA_3G10620) [Aspergillus nidulans FGSC A4]
Length = 351
Score = 209 bits (533), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 121/315 (38%), Positives = 178/315 (56%), Gaps = 29/315 (9%)
Query: 8 CYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNE-KSGVDPSRVGGPENP 66
C E P P +E + + +C CGLV+ DR ID+ SEWRTFSN+ ++ DPSRVG NP
Sbjct: 29 CKEMP--PNLEFPGSHETVCGSCGLVLADREIDMHSEWRTFSNDDQNNDDPSRVGDATNP 86
Query: 67 LLNGSDLSTMIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADRINLTKT 126
LLNG L T I G D + + QN+++ + ++++LL A +EI ++ D + K
Sbjct: 87 LLNGDQLETQIASGGSGRVRD---LYRAQNKQSSDKANKSLLAAYKEIGALCDGFGIPKN 143
Query: 127 IVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGR 186
+ D A LFK V D K KG+S D I + C++IACR+ VPRTF EI AV+K+S+KEIGR
Sbjct: 144 VADTAKYLFKIVDDAKAFKGKSQDVIIAGCIFIACRKCKVPRTFTEIFAVTKVSRKEIGR 203
Query: 187 CFKLILK-----ALETSVDLITTG------------------DFMSRFCSNLSLPNMVQK 223
+K + K LE + +++ G D SRFC+ L LP V
Sbjct: 204 IYKALEKFFTSQNLERANAVVSNGGVPDPNDTYTATTSTKPSDLCSRFCNLLDLPFQVTS 263
Query: 224 AATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
++ ++ + + GRSP+S+ AA IYMAS +S KEI +A V++ TIR +YK
Sbjct: 264 VSSALSDRVTTEGNLAGRSPLSIVAACIYMASYLMGHPKSAKEISQVAHVSDGTIRGAYK 323
Query: 284 LMYPHASKLFPQDFV 298
+Y L ++++
Sbjct: 324 QLYTERESLVDKEWI 338
>gi|154271255|ref|XP_001536481.1| transcription initiation factor IIB [Ajellomyces capsulatus NAm1]
gi|150409704|gb|EDN05148.1| transcription initiation factor IIB [Ajellomyces capsulatus NAm1]
Length = 352
Score = 209 bits (533), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 122/315 (38%), Positives = 177/315 (56%), Gaps = 28/315 (8%)
Query: 8 CYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNE-KSGVDPSRVGGPENP 66
C E P + D + + IC CGLV+ DR ID SEWRTFSN+ ++ DPSRVG NP
Sbjct: 29 CRETPPNLVTPD--SHETICGSCGLVLADREIDQHSEWRTFSNDDQNNDDPSRVGDAANP 86
Query: 67 LLNGSDLSTMIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADRINLTKT 126
LLNG+ L T I G G + + + QN+ + +++ALL A +EI ++ D N+ K
Sbjct: 87 LLNGNQLETQISYGAGGSR--SRELHRAQNKMSSEKTNKALLAAYKEIGALCDGFNIPKN 144
Query: 127 IVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGR 186
+ D A LFK V D K KG+S D I + C++IACRQ VPRTF EI AV++++KKEIGR
Sbjct: 145 VADTAKYLFKIVDDAKAFKGKSQDVIIAGCIFIACRQCKVPRTFTEIFAVTRVTKKEIGR 204
Query: 187 CFKLILK-----ALETSVDLITTG------------------DFMSRFCSNLSLPNMVQK 223
+K + K LE ++++G D +RFC+ L LP V
Sbjct: 205 IYKALEKFFTAQNLERINSVVSSGGVPDPNETYTATTSTKPSDLCNRFCNLLDLPFQVTN 264
Query: 224 AATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
++ +A + + GRSP+S+ AA+IYMAS ++ KEI +A V++ TIR +YK
Sbjct: 265 VSSALADRVTSTGELAGRSPLSIVAASIYMASFLMGQGKTAKEISSVAHVSDGTIRGAYK 324
Query: 284 LMYPHASKLFPQDFV 298
+Y +L ++
Sbjct: 325 QLYAERERLIDPAWI 339
>gi|240273589|gb|EER37109.1| transcription initiation protein [Ajellomyces capsulatus H143]
gi|325087490|gb|EGC40800.1| transcription initiation protein [Ajellomyces capsulatus H88]
Length = 352
Score = 209 bits (532), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 122/309 (39%), Positives = 175/309 (56%), Gaps = 28/309 (9%)
Query: 8 CYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNE-KSGVDPSRVGGPENP 66
C E P + D + + IC CGLV+ DR ID SEWRTFSN+ ++ DPSRVG NP
Sbjct: 29 CRETPPNLVTPD--SHETICGSCGLVLADREIDQHSEWRTFSNDDQNNDDPSRVGDAANP 86
Query: 67 LLNGSDLSTMIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADRINLTKT 126
LLNG+ L T I G G + + + QN+ + +++ALL A +EI ++ D N+ K
Sbjct: 87 LLNGNQLETQISYGAGGSR--SRELHRAQNKMSSEKTNKALLAAYKEIGALCDGFNIPKN 144
Query: 127 IVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGR 186
+ D A LFK V D K KG+S D I + C++IACRQ VPRTF EI AV++++KKEIGR
Sbjct: 145 VADTAKYLFKIVDDAKAFKGKSQDVIIAGCIFIACRQCKVPRTFTEIFAVTRVTKKEIGR 204
Query: 187 CFKLILK-----ALETSVDLITTG------------------DFMSRFCSNLSLPNMVQK 223
+K + K LE ++++G D +RFC+ L LP V
Sbjct: 205 IYKALEKFFTAQNLERINSVVSSGGVPDPNETYTATTSTKPSDLCNRFCNLLDLPFQVTN 264
Query: 224 AATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
++ +A + + GRSP+S+ AA+IYMAS ++ KEI +A V++ TIR +YK
Sbjct: 265 VSSALADRVTSTGELAGRSPLSIVAASIYMASFLMGQGKTAKEISSVAHVSDGTIRGAYK 324
Query: 284 LMYPHASKL 292
+Y +L
Sbjct: 325 QLYAERERL 333
>gi|322708771|gb|EFZ00348.1| transcription initiation protein [Metarhizium anisopliae ARSEF 23]
Length = 347
Score = 209 bits (532), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 113/318 (35%), Positives = 183/318 (57%), Gaps = 26/318 (8%)
Query: 4 NKVCCYEHPDAP--LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNE-KSGVDPSRV 60
N +CC + + P L+E++ +GD +C CG+VVG R+ID SEWRTF+N+ G DPSRV
Sbjct: 19 NILCCPDCKEIPPNLVEEFSSGDMVCQSCGVVVGTRIIDTRSEWRTFANDDHGGDDPSRV 78
Query: 61 GGPENPLLNGSDLSTMIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADR 120
GGP++ + G L+T + A +S+ QN + + + L+ A +EI S+ +
Sbjct: 79 GGPQDEFVEGEQLATTVAFSESKAHK---ALSRTQNNANQDKAQKGLMQAYKEIVSLCEA 135
Query: 121 INLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKIS 180
IN+ + + + A ++FK V K +KG+ +A+ + C++IACRQ VPRTF+EI ++ +S
Sbjct: 136 INMGQNVSNAAKHIFKLVDKHKFMKGKPQEAVIAGCIFIACRQNNVPRTFREIFNLTSVS 195
Query: 181 KKEIGRCFKLILKALE----------TSVDLIT--------TGDFMSRFCSNLSLPNM-- 220
KKE+GR FK + K L+ T ++ +T D SR+ S L N
Sbjct: 196 KKEVGRVFKQLQKFLQKLQDTEGEGATGLNTVTNYENTSVGAEDLCSRYVSQLGFKNQQK 255
Query: 221 VQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQ 280
+ K + +A KA ++ + GRSP+SVAAA IYMA + RS I AGV++ T++
Sbjct: 256 ISKISRDLAEKANDISALAGRSPLSVAAACIYMACHLVGEPRSSLPIAKQAGVSDGTVKT 315
Query: 281 SYKLMYPHASKLFPQDFV 298
+YK ++ +L ++++
Sbjct: 316 AYKHLFAAREQLIKKEWL 333
>gi|225556484|gb|EEH04772.1| transcription initiation protein [Ajellomyces capsulatus G186AR]
Length = 352
Score = 209 bits (532), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 122/309 (39%), Positives = 175/309 (56%), Gaps = 28/309 (9%)
Query: 8 CYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNE-KSGVDPSRVGGPENP 66
C E P + D + + IC CGLV+ DR ID SEWRTFSN+ ++ DPSRVG NP
Sbjct: 29 CRETPPNLVTPD--SHETICGSCGLVLADREIDQHSEWRTFSNDDQNNDDPSRVGDAANP 86
Query: 67 LLNGSDLSTMIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADRINLTKT 126
LLNG+ L T I G G + + + QN+ + +++ALL A +EI ++ D N+ K
Sbjct: 87 LLNGNQLETQISYGAGGSR--SRELHRAQNKMSSEKTNKALLAAYKEIGALCDGFNIPKN 144
Query: 127 IVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGR 186
+ D A LFK V D K KG+S D I + C++IACRQ VPRTF EI AV++++KKEIGR
Sbjct: 145 VADTAKYLFKIVDDAKAFKGKSQDVIIAGCIFIACRQCKVPRTFTEIFAVTRVTKKEIGR 204
Query: 187 CFKLILK-----ALETSVDLITTG------------------DFMSRFCSNLSLPNMVQK 223
+K + K LE ++++G D +RFC+ L LP V
Sbjct: 205 IYKALEKFFTAQNLERINSVVSSGGVPDPNETYTATTSTKPSDLCNRFCNLLDLPFQVTN 264
Query: 224 AATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
++ +A + + GRSP+S+ AA+IYMAS ++ KEI +A V++ TIR +YK
Sbjct: 265 VSSALADRVTSTGELAGRSPLSIVAASIYMASFLMGQGKTAKEISSVAHVSDGTIRGAYK 324
Query: 284 LMYPHASKL 292
+Y +L
Sbjct: 325 QLYAERERL 333
>gi|170091576|ref|XP_001877010.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164648503|gb|EDR12746.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 349
Score = 209 bits (532), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 120/306 (39%), Positives = 183/306 (59%), Gaps = 29/306 (9%)
Query: 12 PDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGS 71
P+ ++E + +GD +C CGLV+GDR++D SEWRTF+N++ G DPSRVG +PL+ G
Sbjct: 38 PNPNIVEQFGSGDLVCGNCGLVLGDRIVDTRSEWRTFANDE-GDDPSRVGAASDPLMEGM 96
Query: 72 D-LSTMIGPGRGDASFDGFGMSKYQNR---RTMNS-SDRALLNAIREINSMADRINLTKT 126
+ L T+I G G G+++ R R+ NS S+R ++ A R+I S D+ +L KT
Sbjct: 97 EQLDTVISFRDG-----GSGIARELQRAASRSQNSRSERNIMTAFRDIGSWCDQFSLPKT 151
Query: 127 IVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGR 186
I D A L+K+ + K L+G+ +A+ +AC++IACRQ VPRTF+EIC ++ +SKK +G+
Sbjct: 152 ISDIAKQLYKRSDEEKLLRGKPLEAVIAACIFIACRQAHVPRTFREICDLTHVSKKILGQ 211
Query: 187 CFKLILKALETSVDLI------------TTG--DFMSRFCSNLSLPNMVQKAATHIARKA 232
C+ KALE + +L TG + + R+C++L LP VQ + I A
Sbjct: 212 CY----KALEQAFNLTPGASAAHASNNPATGPENLLVRYCNHLDLPPNVQSICSDIIVAA 267
Query: 233 VELDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKL 292
+ I GRSP+S+A AIY +S ++I +AGV+E TIR Y+L Y KL
Sbjct: 268 RKHGIADGRSPVSIAGGAIYFTCYLLGKNKSPRDISAVAGVSEGTIRLVYRLYYAEKEKL 327
Query: 293 FPQDFV 298
Q+++
Sbjct: 328 VKQEWI 333
>gi|115396260|ref|XP_001213769.1| transcription initiation factor IIB [Aspergillus terreus NIH2624]
gi|114193338|gb|EAU35038.1| transcription initiation factor IIB [Aspergillus terreus NIH2624]
Length = 351
Score = 209 bits (531), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 121/315 (38%), Positives = 175/315 (55%), Gaps = 29/315 (9%)
Query: 8 CYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNE-KSGVDPSRVGGPENP 66
C E P P +E + + +C CGLV+ DR ID+ SEWRTFSN+ ++ DPSRVG NP
Sbjct: 29 CKEVP--PNLEFPGSHETVCGSCGLVLADREIDMHSEWRTFSNDDQNNDDPSRVGDAVNP 86
Query: 67 LLNGSDLSTMIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADRINLTKT 126
LLNG L T I G D + + QN+++ +++ALL A +EI ++ D + K
Sbjct: 87 LLNGDQLETQIASGGSGRVRD---LYRAQNKQSSEKANKALLAAYKEIGALCDGWGIQKN 143
Query: 127 IVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGR 186
+ D A LFK V D K KG+S D I + C++IACRQ VPRTF+EI AV+K+S+KEIGR
Sbjct: 144 VADTAKYLFKTVDDAKAFKGKSQDVIIAGCIFIACRQRNVPRTFQEIFAVTKVSRKEIGR 203
Query: 187 CFKLILKAL-----ETSVDLITTG------------------DFMSRFCSNLSLPNMVQK 223
+K + K E ++++G D +RFC+ L LP V
Sbjct: 204 IYKALEKFFQAQNKERQNAVLSSGGVPDPNDTYTATTTTRPSDLCNRFCNLLDLPYQVTS 263
Query: 224 AATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
++ +A + GRSP+S+ AA IYMAS + KEI +A V++ TIR +YK
Sbjct: 264 VSSALADHVTTKGDLAGRSPLSIVAACIYMASYLMGHGKPAKEISTVAHVSDSTIRGAYK 323
Query: 284 LMYPHASKLFPQDFV 298
+Y +L +++
Sbjct: 324 QLYAKRERLVDPEWI 338
>gi|448519650|ref|XP_003868125.1| hypothetical protein CORT_0B09860 [Candida orthopsilosis Co 90-125]
gi|380352464|emb|CCG22690.1| hypothetical protein CORT_0B09860 [Candida orthopsilosis]
Length = 353
Score = 209 bits (531), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 124/315 (39%), Positives = 181/315 (57%), Gaps = 26/315 (8%)
Query: 1 MNINKVC--CYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNE-KSGVDP 57
+N+ C C P LIE + GD +C CGLV+ DRV+D SEWRTFSN+ ++G DP
Sbjct: 25 LNVTLTCPECKIFP-PDLIERFSEGDIVCGSCGLVLSDRVVDTRSEWRTFSNDDQNGDDP 83
Query: 58 SRVGGPENPLLNGSDLSTMIG--PGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREIN 115
SRVG NPLL+ DLSTMI P D S G +++ Q++ ++ D AL A +I+
Sbjct: 84 SRVGDAGNPLLDTEDLSTMISYVP---DNSKAGRELNRAQSKSLVDKKDNALAAAYAKIS 140
Query: 116 SMADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICA 175
M D L K + D A ++K V+D K L+G+S ++I +A ++I CR+ V RTFKEI A
Sbjct: 141 QMCDGYQLPKIVQDGAKEVYKMVYDEKRLRGKSQESIMAASIFIGCRKAKVARTFKEIWA 200
Query: 176 VSKISKKEIGRCFKLI------------LKALETSVDLITTG-----DFMSRFCSNLSLP 218
++ + KKEIG+ F+++ A S D I T D + RFCS+L L
Sbjct: 201 LTNVPKKEIGKVFRIMNNIIREKNEANPQSAAYYSQDNIQTTQTSAEDLIRRFCSHLGLS 260
Query: 219 NMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTI 278
+ V A +IAR++ ++ ++ GRSP ++AA IYMAS + +I D GV++ TI
Sbjct: 261 SQVTNGAEYIARRSKDVGVLAGRSPTTIAATVIYMASIVFGVELPPSKISDKTGVSDGTI 320
Query: 279 RQSYKLMYPHASKLF 293
+ SYK ++ KL
Sbjct: 321 KTSYKYLFEEKDKLM 335
>gi|322699177|gb|EFY90941.1| transcription initiation protein [Metarhizium acridum CQMa 102]
Length = 347
Score = 208 bits (529), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 115/330 (34%), Positives = 189/330 (57%), Gaps = 27/330 (8%)
Query: 4 NKVCCYEHPDAP--LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNE-KSGVDPSRV 60
N +CC + + P L+E++ +GD +C CG+VVG R+ID SEWRTF+N+ G DPSRV
Sbjct: 19 NILCCPDCKEIPPNLVEEFSSGDMVCQSCGVVVGTRIIDTRSEWRTFANDDHGGDDPSRV 78
Query: 61 GGPENPLLNGSDLSTMIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADR 120
GGP++ + G L+T + A +S+ QN + + + + L+ A +EI S+ +
Sbjct: 79 GGPQDEFVEGEQLATTVAFSESKAHK---ALSRTQNNASQDKAQKGLMQAYKEIVSLCEA 135
Query: 121 INLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKIS 180
IN+ + + + A ++FK V K +KG+ +A+ + C++IACRQ VPRTF+EI ++ +S
Sbjct: 136 INMGQNVSNAAKHIFKLVDKHKFMKGKPQEAVIAGCIFIACRQNNVPRTFREIFNLTSVS 195
Query: 181 KKEIGRCFKLILKALE----------TSVDLIT--------TGDFMSRFCSNLSLPNM-- 220
KKE+GR FK + K L+ T ++ +T D SR+ S L +
Sbjct: 196 KKEVGRVFKQLQKFLQKLQDTEGEGATGLNTVTNYENTSVGAEDLCSRYVSQLGFKSQQK 255
Query: 221 VQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQ 280
+ K + +A KA ++ + GRSP+SVAAA IYMA + RS I AGV++ T++
Sbjct: 256 ISKISRDLAEKANDISALAGRSPLSVAAACIYMACHLVGEPRSSLPIAKQAGVSDGTVKT 315
Query: 281 SYKLMYPHASKLFPQDFVFH-TPIHELPQL 309
+YK ++ +L ++++ + +PQL
Sbjct: 316 AYKHLFAAREQLIKKEWLEDGGSMDNIPQL 345
>gi|261193976|ref|XP_002623393.1| transcription initiation factor IIB [Ajellomyces dermatitidis
SLH14081]
gi|239588407|gb|EEQ71050.1| transcription initiation factor IIB [Ajellomyces dermatitidis
SLH14081]
gi|239607027|gb|EEQ84014.1| transcription initiation factor IIB [Ajellomyces dermatitidis ER-3]
gi|327354501|gb|EGE83358.1| transcription initiation factor IIB [Ajellomyces dermatitidis ATCC
18188]
Length = 352
Score = 208 bits (529), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 121/315 (38%), Positives = 176/315 (55%), Gaps = 28/315 (8%)
Query: 8 CYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNE-KSGVDPSRVGGPENP 66
C E P + D + + IC CGLV+ DR ID SEWRTFSN+ ++ DPSRVG NP
Sbjct: 29 CRETPPNLVTPD--SHETICGTCGLVLADREIDQHSEWRTFSNDDQNNDDPSRVGDAANP 86
Query: 67 LLNGSDLSTMIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADRINLTKT 126
LLNG+ L T I G G + + + QN+ + +++ L+ A +EI ++ D N+ K
Sbjct: 87 LLNGNQLETQISYGAGGSR--SRELHRAQNKMSSEKTNKVLMAAYKEIGALCDGFNIPKN 144
Query: 127 IVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGR 186
+ D A LFK V D K KG+S D I + C++IACRQ VPRTF EI AV++++KKEIGR
Sbjct: 145 VADTAKYLFKIVDDAKAFKGKSQDVIIAGCIFIACRQCKVPRTFTEIFAVTRVTKKEIGR 204
Query: 187 CFKLILK-----ALETSVDLITTG------------------DFMSRFCSNLSLPNMVQK 223
+K + K LE ++++G D +RFC+ L LP V
Sbjct: 205 IYKALEKFFTAQNLERINSVVSSGGVPDPNETYTATTSTKPSDLCNRFCNLLDLPFQVTN 264
Query: 224 AATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
++ +A + + GRSP+S+ AA+IYMAS +S KEI +A V++ TIR +YK
Sbjct: 265 VSSALADRVTSTGDLAGRSPLSIVAASIYMASFLMGQGKSAKEISSVAHVSDGTIRGAYK 324
Query: 284 LMYPHASKLFPQDFV 298
+Y +L ++
Sbjct: 325 QLYAERERLIDPAWI 339
>gi|354544056|emb|CCE40778.1| hypothetical protein CPAR2_108140 [Candida parapsilosis]
Length = 353
Score = 207 bits (528), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 123/315 (39%), Positives = 180/315 (57%), Gaps = 26/315 (8%)
Query: 1 MNINKVC--CYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNE-KSGVDP 57
+N+ C C P LIE + GD +C CGLV+ DRV+D SEWRTFSN+ ++G DP
Sbjct: 25 LNVTLTCPECKIFP-PDLIERFSEGDIVCGSCGLVLSDRVVDTRSEWRTFSNDDQNGDDP 83
Query: 58 SRVGGPENPLLNGSDLSTMIG--PGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREIN 115
SRVG NPLL+ DLSTMI P A G +++ Q++ ++ D AL A +I+
Sbjct: 84 SRVGDAGNPLLDTEDLSTMISYVPDNFKA---GRELNRAQSKSLVDKKDNALAAAYAKIS 140
Query: 116 SMADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICA 175
M D L K + D A ++K V+D K L+G+S ++I +A ++I CR+ V RTFKEI A
Sbjct: 141 QMCDGYQLPKIVQDGAKEVYKMVYDEKRLRGKSQESIMAASIFIGCRKAKVARTFKEIWA 200
Query: 176 VSKISKKEIGRCFKLI------------LKALETSVDLITTG-----DFMSRFCSNLSLP 218
++ + KKEIG+ F+++ A S D I T D + RFCS+L L
Sbjct: 201 LTNVPKKEIGKVFRIMNNIIREKNEANPQSAAYYSQDNIQTTQTSAEDLIRRFCSHLGLS 260
Query: 219 NMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTI 278
+ V A +IAR++ ++ ++ GRSP ++AA IYMAS + +I D GV++ TI
Sbjct: 261 SQVTNGAEYIARRSKDVGVLAGRSPTTIAATVIYMASLVFGVELPPSKISDKTGVSDGTI 320
Query: 279 RQSYKLMYPHASKLF 293
+ SYK ++ KL
Sbjct: 321 KTSYKYLFEEKDKLM 335
>gi|255730671|ref|XP_002550260.1| transcription initiation factor IIB [Candida tropicalis MYA-3404]
gi|240132217|gb|EER31775.1| transcription initiation factor IIB [Candida tropicalis MYA-3404]
Length = 344
Score = 207 bits (528), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 123/317 (38%), Positives = 181/317 (57%), Gaps = 21/317 (6%)
Query: 1 MNINKVC--CYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNE-KSGVDP 57
+N+ C C P L+E + GD +C CGLV+ DRV+D SEWRTFSN+ ++G DP
Sbjct: 17 LNVTLTCPECKIFP-PDLVERFSEGDIVCGSCGLVLSDRVVDTRSEWRTFSNDDQNGDDP 75
Query: 58 SRVGGPENPLLNGSDLSTMIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSM 117
SRVG NPLL+ DLSTMI D + G +++ Q++ ++ D AL A +I+ M
Sbjct: 76 SRVGDAGNPLLDTEDLSTMIS-YVPDNTKVGRELNRAQSKSLVDKKDNALAAAYVKISQM 134
Query: 118 ADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVS 177
D L K + D A ++K V+D K L+G+S ++I +A ++I CR+ V R+FKEI A++
Sbjct: 135 CDGYQLPKIVSDGAKEVYKMVYDEKPLRGKSQESIMAASIFIGCRKANVARSFKEIWALT 194
Query: 178 KISKKEIGRCFKLILK-----------ALETSVDLITTG-----DFMSRFCSNLSLPNMV 221
+ +KEIG+ FK++ K A + D I+T D + RFCS+L + V
Sbjct: 195 NVPRKEIGKVFKIMDKIIREKNAANPNAAYYTQDSISTTQTSAEDLIRRFCSHLGVNAQV 254
Query: 222 QKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQS 281
A +IAR+ E+ ++ GRSP ++AA IYMAS +I D GV++ TI+ S
Sbjct: 255 TNGAEYIARRCKEVGVLAGRSPTTIAATVIYMASLVFGIDLPPSKISDKTGVSDGTIKTS 314
Query: 282 YKLMYPHASKLFPQDFV 298
YK MY KL +V
Sbjct: 315 YKYMYEEKEKLIDPYWV 331
>gi|295671166|ref|XP_002796130.1| transcription initiation factor IIB [Paracoccidioides sp. 'lutzii'
Pb01]
gi|225681734|gb|EEH20018.1| transcription initiation factor IIB [Paracoccidioides brasiliensis
Pb03]
gi|226284263|gb|EEH39829.1| transcription initiation factor IIB [Paracoccidioides sp. 'lutzii'
Pb01]
gi|226288886|gb|EEH44398.1| transcription initiation factor IIB [Paracoccidioides brasiliensis
Pb18]
Length = 352
Score = 207 bits (527), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 126/320 (39%), Positives = 180/320 (56%), Gaps = 32/320 (10%)
Query: 6 VC--CYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNE-KSGVDPSRVGG 62
VC C E P + D + + IC CGLV+ DR ID SEWRTFSN+ ++ DPSRVG
Sbjct: 25 VCPECRETPPNLVTPD--SHETICGTCGLVLADREIDQHSEWRTFSNDDQNNDDPSRVGD 82
Query: 63 PENPLLNGSDLSTMIGPGRGDA-SFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADRI 121
NPLLNG+ L T I G G + S D + + QN+ + +++ LL A +EI ++ D
Sbjct: 83 AVNPLLNGNQLETQISYGVGGSRSRD---LHRAQNKMSSEKTNKTLLAAYKEIGALCDGF 139
Query: 122 NLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISK 181
N+ K + D A LFK V D K KG+S D I + C++IACRQ VPRTF EI AV++++K
Sbjct: 140 NIPKNVADTAKYLFKIVDDAKAFKGKSQDVIIAGCIFIACRQCKVPRTFTEIFAVTRVTK 199
Query: 182 KEIGRCFKLILK-----ALETSVDLITTG------------------DFMSRFCSNLSLP 218
KEIGR +K + K LE ++++G D +RFC+ L LP
Sbjct: 200 KEIGRIYKALEKFFTAQNLERINSVVSSGGVPDPNETYTATTSTKPSDLCNRFCNLLDLP 259
Query: 219 NMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTI 278
V ++ +A + + GRSP+S+ AA+IYMAS +S KEI +A V++ TI
Sbjct: 260 FQVTNVSSALADRVTSTGELAGRSPLSIVAASIYMASFLMGQGKSAKEISTVAHVSDGTI 319
Query: 279 RQSYKLMYPHASKLFPQDFV 298
R +YK +Y +L ++
Sbjct: 320 RGAYKQIYAERERLIDPAWI 339
>gi|409079539|gb|EKM79900.1| hypothetical protein AGABI1DRAFT_113149 [Agaricus bisporus var.
burnettii JB137-S8]
gi|426192509|gb|EKV42445.1| hypothetical protein AGABI2DRAFT_195784 [Agaricus bisporus var.
bisporus H97]
Length = 349
Score = 207 bits (527), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 114/297 (38%), Positives = 176/297 (59%), Gaps = 11/297 (3%)
Query: 12 PDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGS 71
P+ +IE++ +GD +C CGLV+GDRV+D SEWRTF+N++ G DPSRVG +PL+ G
Sbjct: 38 PNPNIIEEFGSGDLVCGSCGLVLGDRVVDTRSEWRTFANDE-GDDPSRVGAASDPLMEGI 96
Query: 72 DLSTMIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADRINLTKTIVDRA 131
+ + R S + + +R + S+R +L A R+I+S D+ +L KTI D A
Sbjct: 97 EQLDTVISFRDGGSGIARELQRAASRSQSSRSERNILTAFRDISSWCDQFSLPKTISDIA 156
Query: 132 NNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGRCFKLI 191
L+K+ + K L+G+ DA+ +AC++IACRQ VPRTF+EIC ++ +SKK +G+C+K +
Sbjct: 157 KQLYKRSDEEKLLRGKPLDAVIAACIFIACRQAHVPRTFREICTLTHVSKKVLGQCYKAL 216
Query: 192 LKALETS--------VDLITTG--DFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGR 241
+A S TG + + R+C++L LP VQ + I A + I GR
Sbjct: 217 EQAFNLSPGATHNSNSSSTPTGPENLLVRYCNHLDLPANVQTICSDIIVTARKYGIADGR 276
Query: 242 SPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKLFPQDFV 298
SP+S+A AIY +S ++I +AGV+E TI+ Y+L Y KL Q+++
Sbjct: 277 SPVSIAGGAIYFTCLLLGKSKSVRDISAVAGVSEGTIKLVYRLYYAEKEKLVNQEWI 333
>gi|392568456|gb|EIW61630.1| transcription initiation factor IIB [Trametes versicolor FP-101664
SS1]
Length = 351
Score = 207 bits (527), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 122/304 (40%), Positives = 180/304 (59%), Gaps = 23/304 (7%)
Query: 12 PDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGS 71
P+ ++E++ +GD +C CGLV+GDR++D SEWRTF+N++ G DPSRVG +PL+ G
Sbjct: 37 PNPNIVEEFSSGDLVCGTCGLVLGDRIVDTRSEWRTFANDE-GDDPSRVGAASDPLMEGM 95
Query: 72 D-LSTMIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADRINLTKTIVDR 130
+ L T I R S + + +R + S+R LL A R+I D+ +L KTI D
Sbjct: 96 EQLDTTIS-FRDGGSGIARELQRAASRSAASRSERNLLQAFRDIAGWCDQFSLPKTISDI 154
Query: 131 ANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGRCFKL 190
A L+K+ + K L+G+ +A+ +AC++IACRQ VPRTF+EIC ++ +SKK +G+C+
Sbjct: 155 AKQLYKRSDEEKLLRGKPLEAVIAACIFIACRQAHVPRTFREICNLTHVSKKVLGQCY-- 212
Query: 191 ILKALETSVDLI--------------TTG--DFMSRFCSNLSLPNMVQKAATHIARKAVE 234
KALE + +L TTG D + R+C++L LP VQ I KA E
Sbjct: 213 --KALEQAFNLTPGASQDRHLNAPSGTTGAEDLLVRYCNHLDLPPNVQPICGDIIVKARE 270
Query: 235 LDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKLFP 294
L I GRSP+S+A AIY +S KEI +AGV+E TI+ Y+L Y KL
Sbjct: 271 LGIADGRSPVSIAGGAIYFTCCLLDKPKSVKEISTVAGVSEGTIKLVYRLYYAEKEKLVK 330
Query: 295 QDFV 298
++++
Sbjct: 331 EEWI 334
>gi|453083300|gb|EMF11346.1| cyclin-like protein [Mycosphaerella populorum SO2202]
Length = 358
Score = 206 bits (525), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 113/314 (35%), Positives = 178/314 (56%), Gaps = 26/314 (8%)
Query: 7 CCYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVD-PSRVGGPEN 65
CC + PD L ED+ +GD +C CGLV+ +R ID SEWRTFSN+ G D PSRVG N
Sbjct: 36 CCEDPPD--LREDHASGDLLCGSCGLVLQERSIDTSSEWRTFSNDDQGNDDPSRVGDGPN 93
Query: 66 PLLNGSDLSTMIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADRINLTK 125
LLNG+ L+T I GD + + QN+ ++ +++LL A ++I ++ D L
Sbjct: 94 ALLNGAQLNTNIA--FGDGGMKAKDLHRAQNKANLDKGNKSLLQAYKQIGALCDGWQLPS 151
Query: 126 TIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIG 185
T+ D A +L+K + + KG+ DA+ + C+++ACR+ GVPR+F+E+ ++K++KKEIG
Sbjct: 152 TVSDTAKHLYKDAEESRIFKGKGQDALIAGCVFLACRRNGVPRSFREVMDLTKVTKKEIG 211
Query: 186 RCFKLI----------LKALETSV------DLITT-----GDFMSRFCSNLSLPNMVQKA 224
+ +K++ A +T+V + TT D R+CS L +
Sbjct: 212 KTYKMLEDFIRQRDKQKSASKTAVAPDVYNNAYTTTTADPADLCQRYCSMLDMDQRSTNV 271
Query: 225 ATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKL 284
A +A + + GRSP+S AAA I+MAS ++ K+I +A V++ TIR +YKL
Sbjct: 272 AIALATVMTKTGALAGRSPLSSAAACIFMASMLMGQAKTPKDIMAVAKVSDSTIRHAYKL 331
Query: 285 MYPHASKLFPQDFV 298
+Y KL ++ +
Sbjct: 332 LYAEKEKLLTEEII 345
>gi|145353789|ref|XP_001421184.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144581421|gb|ABO99477.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 390
Score = 206 bits (525), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 125/311 (40%), Positives = 183/311 (58%), Gaps = 25/311 (8%)
Query: 3 INKVC--CYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSN---EKSGVDP 57
++C C H ++ED+ +GD IC+ECGLV+ R+ID SEWRTF + ++ G DP
Sbjct: 20 FTQICAKCARH--TAIVEDHASGDLICTECGLVIESRIIDECSEWRTFGDGDKDRGGADP 77
Query: 58 SRVGGPENPLLNGSDLSTMIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSM 117
SR G N +L G LST IG D +++ +++ N R MN D+AL++A I
Sbjct: 78 SRTVGATNVMLTGGGLSTTIGKNP-DGTYNA-TLTRLHN-RGMN-PDKALISAFHSIGEF 133
Query: 118 ADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVS 177
AD + + + + D A +L++ V + G+SN A+ +ACLYIA RQEG+ RTFKE+C +
Sbjct: 134 ADAMGMNRVVRDGACDLYRMVTSAHSTLGKSNVAMYAACLYIAARQEGMTRTFKEVCGAA 193
Query: 178 K-ISKKEIGRCFKLILKA-----LETSVDLITTGDFMSRFCSNLSLPNM-VQKAATHIAR 230
+ + KEIGRC+K ILK ++ + +IT +RFC NL + + K +HI R
Sbjct: 194 QGTTVKEIGRCYKFILKVCDGLNMQMNEQMITPELLTNRFCGNLGMSDHDFLKLCSHIVR 253
Query: 231 KAVELDIVPG----RSPISVAAAAIYMAS---QASSDKRSQKEIGDIAGVAEVTIRQSYK 283
EL G + P SVAAAAI++AS + DK S I +++G+AEVTIR S+
Sbjct: 254 TFRELRDSEGHKSEKQPASVAAAAIFIASVVREMHKDKASLFRISEVSGMAEVTIRTSFF 313
Query: 284 LMYPHASKLFP 294
M P+AS+L P
Sbjct: 314 DMVPYASRLLP 324
>gi|344231613|gb|EGV63495.1| hypothetical protein CANTEDRAFT_114798 [Candida tenuis ATCC 10573]
Length = 344
Score = 206 bits (525), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 118/311 (37%), Positives = 180/311 (57%), Gaps = 21/311 (6%)
Query: 1 MNINKVC--CYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNE-KSGVDP 57
+NI VC C +P LIE + GD +C CGLV+ DRV+D SEWRTFSN+ ++G DP
Sbjct: 18 LNITLVCPDCKIYP-PDLIERFSEGDIVCGSCGLVLSDRVVDTRSEWRTFSNDDQNGDDP 76
Query: 58 SRVGGPENPLLNGSDLSTMIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSM 117
SRVG NPLL+ +LSTMI D+ G +S+ Q++ ++ D AL A +I+ M
Sbjct: 77 SRVGDAGNPLLDHENLSTMISHS-PDSLRIGRELSRAQSKSLVDKKDNALAAAFAKISQM 135
Query: 118 ADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVS 177
D L K + D A ++K V++ + L+G+S ++I +A ++I CR+ VPRTFKEI A++
Sbjct: 136 CDGYQLPKIVQDAAKEVYKLVYEERPLRGKSQESIMAASIFIGCRKAKVPRTFKEIWALT 195
Query: 178 KISKKEIGRCFKLI--------------LKALETSVDLITTG--DFMSRFCSNLSLPNMV 221
+ + EIG+ FK++ +E ++ T D + R+CS+L L +
Sbjct: 196 NVPRTEIGKVFKIMDRIIREKNAINPAAFSLVEDNIQTTQTSAEDLIRRYCSHLGLGTQI 255
Query: 222 QKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQS 281
AA +IAR+ EL ++ GRSP ++AA IYMA+ +I D GV+E TI+ S
Sbjct: 256 TNAAEYIARRCKELGVLAGRSPTTIAATVIYMANVIFGADLQPSKIADKTGVSEGTIKTS 315
Query: 282 YKLMYPHASKL 292
Y+++ +L
Sbjct: 316 YRVITEQKDEL 326
>gi|269862954|ref|XP_002651040.1| transcription initiation factor IIB [Enterocytozoon bieneusi H348]
gi|220065224|gb|EED43015.1| transcription initiation factor IIB [Enterocytozoon bieneusi H348]
Length = 277
Score = 206 bits (524), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 107/254 (42%), Positives = 159/254 (62%), Gaps = 8/254 (3%)
Query: 2 NINKVCCYEHPDA-PLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRV 60
N+NK C E + +IEDYR G +C +CG V ++++D G EWR FS+ G DPSRV
Sbjct: 10 NLNK--CNECGEVNSVIEDYRNGFNVCGKCGCVFREKIVDEGGEWRNFSDSTKG-DPSRV 66
Query: 61 GGPENPLLNGSDLSTMIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADR 120
G NP L+ L T+I G G S++ +++ Q + M DR L N + I S +R
Sbjct: 67 GSAINPFLDVEQLDTVISAGSGANSYN---LNRIQMKNYMRGPDRVLKNGFKLIQSFCER 123
Query: 121 INLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKIS 180
LT+TI+D+A +FK V K LKG++ + AC+YIAC+ EG PRTFKEI ++ +
Sbjct: 124 GFLTQTIIDKAQAIFKDVESKKLLKGKNLEGCIGACIYIACKTEGCPRTFKEISVITVVP 183
Query: 181 KKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPG 240
K+EIG+C+KLI K ++T+ ++ T D + RFCS+L+L +Q A +IA+K ++ + G
Sbjct: 184 KREIGKCYKLISKEIDTT-GIMATADIVGRFCSDLNLNAKIQNTARYIAKKVQDIGCLAG 242
Query: 241 RSPISVAAAAIYMA 254
RSP S+A+A IY+
Sbjct: 243 RSPDSIASAIIYLT 256
>gi|393216052|gb|EJD01543.1| cyclin-like protein [Fomitiporia mediterranea MF3/22]
Length = 354
Score = 206 bits (524), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 112/307 (36%), Positives = 182/307 (59%), Gaps = 25/307 (8%)
Query: 12 PDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGS 71
P+ +IE++ +GD +C CGL++GDRV+D SEWRTF+N++ G DPSRVG +PL+ G
Sbjct: 38 PNPNIIEEFGSGDLVCGTCGLILGDRVVDTRSEWRTFANDE-GDDPSRVGAAIDPLMEGM 96
Query: 72 D-LSTMIG---PGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADRINLTKTI 127
+ + T+I G G A S+ QN R S+R +L A R+I+S D+ +L KTI
Sbjct: 97 EQMDTVISYKDGGSGVARELQRAASRSQNTR----SERNMLQAFRDISSWCDQFSLPKTI 152
Query: 128 VDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGRC 187
D A L+K+ + K L+G+S DA+ +AC++IACRQ VPRTF+E+C ++ + KK +G+C
Sbjct: 153 SDIAKQLYKRADEEKLLRGKSLDAVIAACIFIACRQAHVPRTFREMCTLTHVPKKTLGQC 212
Query: 188 FKLILKAL----------------ETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARK 231
+K + KA + + D ++R+C++L LP++VQ A+ I
Sbjct: 213 YKTLEKAFNLAAAGSNNTTQNSRPDPAATTTNPQDLLARYCNHLGLPHLVQSTASEIISI 272
Query: 232 AVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASK 291
E GRSPIS+A+ +IY +Q + K++ + AGV+E T++ +K+ +
Sbjct: 273 GKEHAFTDGRSPISIASGSIYFTTQLLGVPMTMKDLCENAGVSESTVKLVFKIYCENRDV 332
Query: 292 LFPQDFV 298
+ Q+++
Sbjct: 333 VVKQEWL 339
>gi|392587013|gb|EIW76348.1| transcription initiation factor IIB [Coniophora puteana RWD-64-598
SS2]
Length = 353
Score = 206 bits (524), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 116/303 (38%), Positives = 176/303 (58%), Gaps = 21/303 (6%)
Query: 12 PDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGS 71
P+ ++E++ +GD +C CGLV+GDRV+D SEWRTF+N++ G DPSRVG +PLL G
Sbjct: 39 PNPHIVEEFGSGDLVCGNCGLVLGDRVVDTRSEWRTFANDE-GDDPSRVGAASDPLLEGM 97
Query: 72 DLSTMIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADRINLTKTIVDRA 131
+ + R S + + +R + S+R LL A R+I D+ +L KTI D A
Sbjct: 98 EQLDTVISFRDGGSGIARELQRAASRSQSSRSERNLLTAFRDIGGWCDQFSLPKTISDIA 157
Query: 132 NNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGRCFKLI 191
L+K+ + K L+G+ +A+ +AC++IACRQ VPRTF+EIC ++ +SKK +G+C+
Sbjct: 158 KQLYKRSDEEKLLRGKPLEAVIAACIFIACRQAHVPRTFREICNLTNVSKKTLGQCY--- 214
Query: 192 LKALETSVDLI--------------TTG--DFMSRFCSNLSLPNMVQKAATHIARKAVEL 235
KALE + +L +TG + + R+C++L LP VQ I A +
Sbjct: 215 -KALEQAFNLTPGSGSGGASIHPSPSTGPENLLVRYCNHLDLPANVQSICGDIIVAARKH 273
Query: 236 DIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKLFPQ 295
I GRSP+S+A AIY +S ++I +AGV+E TI+ Y+L Y KL Q
Sbjct: 274 GIADGRSPVSIAGGAIYFTCHLLGKAKSARDISSVAGVSEGTIKLVYRLYYTDREKLVKQ 333
Query: 296 DFV 298
D++
Sbjct: 334 DWI 336
>gi|342879738|gb|EGU80975.1| hypothetical protein FOXB_08534 [Fusarium oxysporum Fo5176]
Length = 345
Score = 206 bits (524), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 114/316 (36%), Positives = 179/316 (56%), Gaps = 25/316 (7%)
Query: 4 NKVCCYEHPDAP--LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNE-KSGVDPSRV 60
N + C E +P L+E++ +GD +C +CG+VVG R+ID SEWRTF+N+ + G DPSRV
Sbjct: 17 NILVCPECNISPPHLVEEFSSGDTVCEDCGMVVGSRIIDTRSEWRTFANDDQGGDDPSRV 76
Query: 61 GGPENPLLNGSDLSTMIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADR 120
GGP++ + G L+T + A +S+ QN + S + L+ A +EI S +
Sbjct: 77 GGPQDEFVEGQQLATTVAFSETKAHK---ALSRTQNNTNQDKSQKGLMQAYKEIVSYCEA 133
Query: 121 INLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKIS 180
IN+ + + A ++FK V K LKG+ +A+ + C++IACRQ VPRTF+EI ++ +S
Sbjct: 134 INMGTNVSNAAKHIFKLVDKHKFLKGKPQEAVIAGCIFIACRQNNVPRTFREIFNLTSVS 193
Query: 181 KKEIGRCFKLILKALE---------TSVDLIT--------TGDFMSRFCSNLSLP--NMV 221
KKE+GR FK + L+ T ++ +T D R+ S L N +
Sbjct: 194 KKEVGRVFKQLQSFLQKLQDQDGEATGLNTVTNYENTSVGAEDLCGRYVSQLGFTKQNKI 253
Query: 222 QKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQS 281
K + +A +A + + GRSP+SVAAA IYMA Q + RS I AGV++ T++ +
Sbjct: 254 SKISRSLAERANNISALAGRSPLSVAAACIYMACQIVGESRSSLPIAKQAGVSDGTVKTA 313
Query: 282 YKLMYPHASKLFPQDF 297
YK +Y +L +++
Sbjct: 314 YKHLYAAREQLITKEW 329
>gi|452989000|gb|EME88755.1| hypothetical protein MYCFIDRAFT_159927 [Pseudocercospora fijiensis
CIRAD86]
Length = 362
Score = 206 bits (523), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 116/327 (35%), Positives = 177/327 (54%), Gaps = 32/327 (9%)
Query: 1 MNINKVC--CYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVD-P 57
+N+ +C C E P L ED+ +GD IC CGLV+ +R ID SEWRTFSN+ G D P
Sbjct: 26 LNVRLMCRDCREDP-PDLREDHASGDLICGSCGLVLQERSIDTSSEWRTFSNDDQGNDDP 84
Query: 58 SRVGGPENPLLNGSDLSTMIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSM 117
SRVG N LLNG+ L+T I GD + + QN+ ++ ++ LL A ++I ++
Sbjct: 85 SRVGDGPNALLNGAQLNTSIA--FGDGGIRSKELHRAQNKANLDKGNKTLLQAYKQIGAL 142
Query: 118 ADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVS 177
D L ++ D A ++FK + + KG+S +A+ + C+++ACR+ V R+F+E+ ++
Sbjct: 143 CDGWQLPNSVSDTAKHIFKDADESRLFKGKSQEALIAGCVFLACRRNNVARSFREVMELT 202
Query: 178 KISKKEIGRCFKLIL---------KALETSVDLITTG-----------------DFMSRF 211
K+SKKEIGR FKL+ K + ++ G D RF
Sbjct: 203 KVSKKEIGRTFKLLENFLMNKEKDKGASGATSMVAGGTVVYNEQYKGSTSSDPADLCQRF 262
Query: 212 CSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIA 271
CS L + A +A + ++ GRSP+S AAA IYMA Q ++ KEI +A
Sbjct: 263 CSQLDMDQRTTNMAIALATRMGVTGVLAGRSPLSSAAACIYMAGQLMGQAKNPKEIQAVA 322
Query: 272 GVAEVTIRQSYKLMYPHASKLFPQDFV 298
V++ TIR +YKL+Y KL ++ +
Sbjct: 323 KVSDSTIRHAYKLLYLEKDKLITEEII 349
>gi|302922832|ref|XP_003053548.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|256734489|gb|EEU47835.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 347
Score = 206 bits (523), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 112/317 (35%), Positives = 181/317 (57%), Gaps = 25/317 (7%)
Query: 4 NKVCCYEHPDAP--LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNE-KSGVDPSRV 60
N +CC + + P LIE++ +GD +C CG+VVG R+ID SEWRTF+N+ + G DPSRV
Sbjct: 20 NILCCPDCREIPPNLIEEFSSGDVVCESCGVVVGTRIIDTRSEWRTFANDDQGGDDPSRV 79
Query: 61 GGPENPLLNGSDLSTMIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADR 120
GGP++ + G L+T + A +S+ QN + + + L+ A +EI S+ +
Sbjct: 80 GGPQDEFVEGQQLATTVAFSESKAHK---ALSRTQNNTNQDKAQKGLMQAYKEIVSLCEA 136
Query: 121 INLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKIS 180
IN+ + + + A ++FK V K LKG+ +A+ + C++IACRQ VPRTF+EI ++ +S
Sbjct: 137 INMGQNVSNAAKHIFKLVDKHKFLKGKPQEAVIAGCIFIACRQNNVPRTFREIFNLTSVS 196
Query: 181 KKEIGRCFKLILKALE---------TSVDLIT--------TGDFMSRFCSNLSLPNM--V 221
KKE+GR FK + L+ T ++ +T D R+ S L N +
Sbjct: 197 KKEVGRVFKQLQSFLQKLQGQDGEATGLNAVTNYENTSVGAEDLCGRYVSQLGFKNQQKI 256
Query: 222 QKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQS 281
K + +A +A E+ + GRSP+SVAAA IYMA + R I AGV++ T++ +
Sbjct: 257 SKISRDLAEQANEISALAGRSPLSVAAACIYMACHLVGEPRPSLPIAKQAGVSDGTVKTA 316
Query: 282 YKLMYPHASKLFPQDFV 298
YK ++ +L ++++
Sbjct: 317 YKHLFAAREQLIKKEWL 333
>gi|269862647|ref|XP_002650920.1| transcription initiation factor IIB [Enterocytozoon bieneusi H348]
gi|220065412|gb|EED43136.1| transcription initiation factor IIB [Enterocytozoon bieneusi H348]
Length = 310
Score = 205 bits (522), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 113/294 (38%), Positives = 173/294 (58%), Gaps = 15/294 (5%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLST 75
+IEDYR G +C +CG V ++++D G EWR FS+ G DPSRVG NP L+ L T
Sbjct: 23 VIEDYRNGFNVCGKCGCVFREKIVDEGGEWRNFSDSTKG-DPSRVGSAINPFLDVEQLDT 81
Query: 76 MIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADRINLTKTIVDRANNLF 135
+I G G S++ +++ Q + M DR L N + I S +R LT+TI+D+A +F
Sbjct: 82 VISAGSGANSYN---LNRIQMKNYMRGPDRVLKNGFKLIQSFCERGFLTQTIIDKAQAIF 138
Query: 136 KQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGRCFKLILKAL 195
K V K LKG++ + AC+YIAC+ EG PRTF+EI ++ + K+EIG+C+KLI K +
Sbjct: 139 KDVESKKLLKGKNLEGCIGACIYIACKTEGCPRTFQEISVITVVPKREIGKCYKLISKEM 198
Query: 196 ---ETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIY 252
E+ + DF + L+L +Q A +IA+K ++ + GRSP S+A+A IY
Sbjct: 199 TRPESWAPQTLSVDF-----APLNLNAKIQNTARYIAKKVQDIGCLAGRSPDSIASAIIY 253
Query: 253 MASQASSDKRS-QKEIGDIAGVAEVTIRQSYKLMYPHASKLFPQDFVFHTPIHE 305
+ D QK+I + V +VTIR +YK + P+ ++ P++F T ++E
Sbjct: 254 LTLCLYPDFLFLQKDIQYVTNVTDVTIRNTYKDLLPYKKEIIPEEFT--TAVNE 305
>gi|451847728|gb|EMD61035.1| hypothetical protein COCSADRAFT_39743 [Cochliobolus sativus ND90Pr]
Length = 366
Score = 205 bits (522), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 116/326 (35%), Positives = 177/326 (54%), Gaps = 31/326 (9%)
Query: 1 MNINKVC--CYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVD-P 57
+N+ +C C E+P L+E++ AGD IC CG V+ DR+ID SEWRTFSN+ G D P
Sbjct: 32 LNVALICPDCKENP-PNLVEEFSAGDTICGSCGRVLADRIIDTRSEWRTFSNDDQGNDDP 90
Query: 58 SRVGGPENPLLNGSDLSTMIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSM 117
SR+G NPLL+GS L T IG GD +S+ N+ + ++AL A +I ++
Sbjct: 91 SRIGDAANPLLHGSQLQTEIG--FGDGGMRVRDLSRAHNKSNHDKVNKALQAAYGQITAL 148
Query: 118 ADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVS 177
D N+++ + A L+K D K KG+S DAI + C++IACR+ R+F+EI ++
Sbjct: 149 CDSQNISRPTAETAKMLYKMTDDAKLFKGKSQDAIIAGCIFIACRKHDQQRSFREIFKMT 208
Query: 178 KISKKEIGRCFKLILKALETS----------------VDLI---------TTGDFMSRFC 212
+SKKE+GR FK++ ++ S V+L+ + M R C
Sbjct: 209 NVSKKEVGRTFKVLEAFIQKSQNSGPSVAGNGAVIDTVNLLNQKGGTTATSAASLMPRAC 268
Query: 213 SNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAG 272
+ L+L VQ A A + + GRSP+S+A A +Y+ S +S KEIG
Sbjct: 269 AKLALGTQVQMVAEECADQVAHYGVAAGRSPLSIAGACLYLVSHLMGQPKSPKEIGLAVE 328
Query: 273 VAEVTIRQSYKLMYPHASKLFPQDFV 298
V++ TIR +YKLM+ K+ +++
Sbjct: 329 VSDGTIRTAYKLMHMEQDKIIKDEWI 354
>gi|149244370|ref|XP_001526728.1| transcription initiation factor IIB [Lodderomyces elongisporus NRRL
YB-4239]
gi|146449122|gb|EDK43378.1| transcription initiation factor IIB [Lodderomyces elongisporus NRRL
YB-4239]
Length = 349
Score = 205 bits (522), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 119/307 (38%), Positives = 179/307 (58%), Gaps = 25/307 (8%)
Query: 12 PDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNE-KSGVDPSRVGGPENPLLNG 70
PD LIE + GD +C CGLV+ DR++D SEWRTFSN+ ++G DPSRVG NPLL+
Sbjct: 35 PD--LIERFSEGDIVCGSCGLVLSDRMVDTRSEWRTFSNDDQNGDDPSRVGDAGNPLLDT 92
Query: 71 SDLSTMIG--PGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADRINLTKTIV 128
DLSTMI P D + G +++ Q + ++ D AL A +I+ M D L K +
Sbjct: 93 EDLSTMISYVP---DNTKAGRELTRAQQKSLVDKKDNALAAAYVKISQMCDGYQLPKIVQ 149
Query: 129 DRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGRCF 188
D A ++K V++ K+L+G+S ++I +A ++I CR+ V R FKEI A++ + KKEIG+ F
Sbjct: 150 DGAKEVYKMVYEEKSLRGKSQESIMAASIFIGCRKAKVARLFKEIWALTNVPKKEIGKVF 209
Query: 189 KLILKALE-------------TSVDLITTG----DFMSRFCSNLSLPNMVQKAATHIARK 231
+++ + ++ + ++ TT D + RFCS+L L V AA HIAR+
Sbjct: 210 RIMDRIIQENHAANPQTAAYYSHENIQTTQTSAEDLIRRFCSHLGLNTQVTNAAEHIARR 269
Query: 232 AVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASK 291
A E+ ++ GRSP ++AA IYMA +I D GV++ TI+ S+K +Y K
Sbjct: 270 AKEVGVLAGRSPTTIAATVIYMACMVFGIDMPPSKISDKTGVSDGTIKTSHKYLYEARDK 329
Query: 292 LFPQDFV 298
L +V
Sbjct: 330 LIDPYWV 336
>gi|398404368|ref|XP_003853650.1| hypothetical protein MYCGRDRAFT_103549 [Zymoseptoria tritici
IPO323]
gi|339473533|gb|EGP88626.1| hypothetical protein MYCGRDRAFT_103549 [Zymoseptoria tritici
IPO323]
Length = 361
Score = 204 bits (520), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 122/325 (37%), Positives = 172/325 (52%), Gaps = 30/325 (9%)
Query: 1 MNINKVC--CYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVD-P 57
+N+ +C C E P L ED+ +GD IC CGLV+ R ID SEWRTFSN+ G D P
Sbjct: 27 LNVRLICRDCREDP-PELREDHASGDLICENCGLVLQQRSIDTSSEWRTFSNDDQGNDDP 85
Query: 58 SRVGGPENPLLNGSDLSTMIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSM 117
SRVG N LLNG+ L+T I GD + + QN+ + S++ LL A ++I ++
Sbjct: 86 SRVGDGPNALLNGAQLNTNIA--FGDGGMRSKELHRAQNKANHDKSNKLLLQAYKQIGAL 143
Query: 118 ADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVS 177
D L T+ + A +++K + + KG+S +A+ + C++IACR+ VPRTF+E ++
Sbjct: 144 CDGWALPYTVSESAKHIYKDADESRLFKGKSQEALIAGCVFIACRRNNVPRTFREAMELT 203
Query: 178 KISKKEIGRCFKLIL-------KALETSVDLITTG-----------------DFMSRFCS 213
+SKKEIGR FKL+ K D G D RFCS
Sbjct: 204 SVSKKEIGRTFKLLENFLMNKDKGKNAGSDAAANGAVVYNEAYKGSATADPADLCQRFCS 263
Query: 214 NLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGV 273
L L A +A + + GRSP+S AAA IYMAS + + KEI +A V
Sbjct: 264 MLGLDQRATNVAIALATAMTKSGALAGRSPLSSAAACIYMASYLMGNPKHPKEIQSVAKV 323
Query: 274 AEVTIRQSYKLMYPHASKLFPQDFV 298
+E TIR +YKL+Y +KL + V
Sbjct: 324 SESTIRHAYKLLYVDRNKLITDELV 348
>gi|358379756|gb|EHK17435.1| hypothetical protein TRIVIDRAFT_182873 [Trichoderma virens Gv29-8]
Length = 356
Score = 204 bits (519), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 108/318 (33%), Positives = 179/318 (56%), Gaps = 26/318 (8%)
Query: 4 NKVCCYEHPDAP--LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNE-KSGVDPSRV 60
N +CC + + P LIE++ +GD +C CG+VVG R+ID SEWRTF+N+ + G DPSRV
Sbjct: 28 NVLCCPDCKEYPPNLIEEFSSGDMVCQSCGVVVGTRIIDTRSEWRTFANDDQGGDDPSRV 87
Query: 61 GGPENPLLNGSDLSTMIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADR 120
GGP++ + G L+T + A +S+ QN + + + L+ A +EI ++ +
Sbjct: 88 GGPQDEFVEGQHLATTVAFSESKAHK---ALSRTQNNANADKAQKGLMQAYKEIVALCET 144
Query: 121 INLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKIS 180
IN+ + + A ++FK V K +KG+ +A+ + C++IACRQ VPRTF+EI ++ +S
Sbjct: 145 INMGANVSNAAKHIFKLVDKHKFMKGKPQEAVIAGCIFIACRQNNVPRTFREIFNLTSVS 204
Query: 181 KKEIGRCFKLILKALE----------TSVDLIT--------TGDFMSRFCSNLSLPNM-- 220
KKE+GR FK + L+ T ++ +T D R+ S L N
Sbjct: 205 KKEVGRVFKQLQNFLQKIQVTEGEGATGLNTVTNYENTSVGAEDLCGRYVSQLGFKNQQK 264
Query: 221 VQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQ 280
+ K + +A +A ++ + GRSP+SVAAA IYMA + R I GV++ T++
Sbjct: 265 ISKISRDLAEQATDISALAGRSPLSVAAACIYMACHLMGEPRPSAPIAKQTGVSDGTVKT 324
Query: 281 SYKLMYPHASKLFPQDFV 298
+YK ++ + L ++++
Sbjct: 325 AYKFLFAYRDTLIKKEWL 342
>gi|11498897|ref|NP_070128.1| transcription initiation factor IIB [Archaeoglobus fulgidus DSM
4304]
gi|14195234|sp|O28970.1|TF2B_ARCFU RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|2649280|gb|AAB89947.1| transcription initiation factor IIB [Archaeoglobus fulgidus DSM
4304]
Length = 326
Score = 204 bits (519), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 111/286 (38%), Positives = 164/286 (57%), Gaps = 11/286 (3%)
Query: 8 CYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPL 67
C E LI DYR G+ IC +CGLV+ D ID G EWR F +E+ SRVG P
Sbjct: 30 CPECGSPRLIRDYRRGEFICQDCGLVIEDTYIDAGPEWRAFDSEQRD-KRSRVGAPVTYT 88
Query: 68 LNGSDLSTMIGPGRGDASFDG---------FGMSKYQNR-RTMNSSDRALLNAIREINSM 117
++ LST+I D F + K+Q R R N+++R L A+ E++ M
Sbjct: 89 IHDKGLSTIIDWSNKDYYGKAISVRNRAQLFRLRKWQRRIRISNATERNLAFALSELDRM 148
Query: 118 ADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVS 177
A + L K++ + A ++++ + ++GRS + + +A LY ACRQ GVPRT EI S
Sbjct: 149 ASALGLPKSVRETAAVIYRKAVEKNLIRGRSIEGVVAAALYAACRQAGVPRTLDEIATYS 208
Query: 178 KISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDI 237
++ +KEIGR ++ I + L + + D++ RFC+ L L VQK A I +KA E ++
Sbjct: 209 RVDRKEIGRTYRFITRELGLKLMPTSPADYIPRFCAALGLSGEVQKKAIEIIKKAEEREL 268
Query: 238 VPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
GR P VAAAA+Y+AS ++R+Q+E+ ++AGV EVTIR YK
Sbjct: 269 TSGRGPTGVAAAALYVASILLGERRTQREVAEVAGVTEVTIRNRYK 314
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 48/96 (50%), Gaps = 1/96 (1%)
Query: 208 MSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEI 267
+ R S L LP V++ A I RKAVE +++ GRS V AAA+Y A + + R+ EI
Sbjct: 145 LDRMASALGLPKSVRETAAVIYRKAVEKNLIRGRSIEGVVAAALYAACRQAGVPRTLDEI 204
Query: 268 GDIAGVAEVTIRQSYKLMYPHAS-KLFPQDFVFHTP 302
+ V I ++Y+ + KL P + P
Sbjct: 205 ATYSRVDRKEIGRTYRFITRELGLKLMPTSPADYIP 240
>gi|150866589|ref|XP_001386238.2| hypothetical protein PICST_85155 [Scheffersomyces stipitis CBS
6054]
gi|149387845|gb|ABN68209.2| general RNA polymerase II transcription factor, TFIIB subunit
[Scheffersomyces stipitis CBS 6054]
Length = 350
Score = 204 bits (518), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 117/304 (38%), Positives = 172/304 (56%), Gaps = 20/304 (6%)
Query: 7 CCYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNE-KSGVDPSRVGGPEN 65
C PD LIE + GD +C CGLV+ DRV+D SEWRTFSN+ ++G DPSRVG N
Sbjct: 32 CKIFPPD--LIERFSEGDIVCGSCGLVLSDRVVDTRSEWRTFSNDDQNGDDPSRVGDAGN 89
Query: 66 PLLNGSDLSTMIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADRINLTK 125
PLL+ DLSTMI + G +++ Q++ ++ D AL A +I+ M D L K
Sbjct: 90 PLLDTEDLSTMISYVPENTRV-GRELNRAQSKSLVDKKDNALAAAYAKISQMCDGYQLPK 148
Query: 126 TIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIG 185
+ D A ++K V+D + L+G+S ++I +A ++I CR+ V R+FKEI A++ + +KEIG
Sbjct: 149 IVQDGAKEVYKLVYDERPLRGKSQESIMAAAIFIGCRKAKVARSFKEIWALTNVPRKEIG 208
Query: 186 RCFKLILKALE----------------TSVDLITTGDFMSRFCSNLSLPNMVQKAATHIA 229
+ FK+I K ++ T D + R CS+L L V A +IA
Sbjct: 209 KVFKIIDKVIQEKNAANPNALMFNQDNMQTTQTTAEDLIRRNCSHLGLNAQVTNGAEYIA 268
Query: 230 RKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHA 289
R+ E+ ++ GRSP ++AA IYMA+ +I D GV++ TI+ SYK+MY
Sbjct: 269 RRCKEVGVLAGRSPTTIAATVIYMAALVFGIDLPPSKISDKTGVSDGTIKTSYKVMYEEK 328
Query: 290 SKLF 293
KL
Sbjct: 329 EKLI 332
>gi|46107428|ref|XP_380773.1| hypothetical protein FG00597.1 [Gibberella zeae PH-1]
Length = 348
Score = 204 bits (518), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 113/315 (35%), Positives = 182/315 (57%), Gaps = 25/315 (7%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNE-KSGVDPSRVGGPENPLLNGSDLS 74
L++++ +GD +CS+CGLVVG R+ID SEWRTF+N+ + G DPSRVGGP++ + G L+
Sbjct: 32 LVDEWSSGDTVCSDCGLVVGSRIIDTRSEWRTFANDDQGGDDPSRVGGPQDEFVEGQQLA 91
Query: 75 TMIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADRINLTKTIVDRANNL 134
T + A +S+ QN T + + + L+ A +EI S+ + IN+ + + + A ++
Sbjct: 92 TTVAFSDLKAHK---ALSRTQNNTTQDKAQKGLMLAYKEIVSLCEAINMGQNVSNAAKHI 148
Query: 135 FKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGRCFKLILKA 194
FK V K LKG+ +A+ + C++IACRQ VPRTF+EI ++ +SKKE+GR FK +
Sbjct: 149 FKLVDKHKFLKGKPQEAVIAGCIFIACRQNNVPRTFREIFNLTSVSKKEVGRVFKQLQSF 208
Query: 195 LE---------TSVDLITT--------GDFMSRFCSNLSLPNM--VQKAATHIARKAVEL 235
L+ T ++ +T D R+ S L L N V K + +A +A ++
Sbjct: 209 LQKLQETEGDATGLNTVTNYENTSVGAEDLCGRYVSQLGLLNQQKVAKISRDLAEQANDI 268
Query: 236 DIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKLFPQ 295
+ GRSP+SVAAA I+MA + I AGV++ T++ +YK +Y +L +
Sbjct: 269 KDLAGRSPLSVAAACIFMACHVVGEACPSHLIAKQAGVSDGTVKTAYKYLYAARKQLIKK 328
Query: 296 DFVFH--TPIHELPQ 308
+++ T + LPQ
Sbjct: 329 EWLVDNGTSMESLPQ 343
>gi|408396047|gb|EKJ75215.1| hypothetical protein FPSE_04606 [Fusarium pseudograminearum CS3096]
Length = 349
Score = 204 bits (518), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 113/315 (35%), Positives = 182/315 (57%), Gaps = 25/315 (7%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNE-KSGVDPSRVGGPENPLLNGSDLS 74
L++++ +GD +CS+CGLVVG R+ID SEWRTF+N+ + G DPSRVGGP++ + G L+
Sbjct: 32 LVDEWSSGDTVCSDCGLVVGSRIIDTRSEWRTFANDDQGGDDPSRVGGPQDEFVEGQQLA 91
Query: 75 TMIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADRINLTKTIVDRANNL 134
T + A +S+ QN T + + + L+ A +EI S+ + IN+ + + + A ++
Sbjct: 92 TTVAFSDLKAHK---ALSRTQNNTTQDKAQKGLMLAYKEIVSLCEAINMGQNVSNAAKHI 148
Query: 135 FKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGRCFKLILKA 194
FK V K LKG+ +A+ + C++IACRQ VPRTF+EI ++ +SKKE+GR FK +
Sbjct: 149 FKLVDKHKFLKGKPQEAVIAGCIFIACRQNNVPRTFREIFNLTSVSKKEVGRVFKQLQSF 208
Query: 195 LE---------TSVDLITT--------GDFMSRFCSNLSLPNM--VQKAATHIARKAVEL 235
L+ T ++ +T D R+ S L L N V K + +A +A ++
Sbjct: 209 LQKLQETEGDATGLNTVTNYENTSVGAEDLCGRYVSQLGLLNQQKVAKISRDLAEQANDI 268
Query: 236 DIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKLFPQ 295
+ GRSP+SVAAA I+MA + I AGV++ T++ +YK +Y +L +
Sbjct: 269 KDLAGRSPLSVAAACIFMACHVVGEACPSHLIAKQAGVSDGTVKTAYKYLYAARKQLIKK 328
Query: 296 DFVFH--TPIHELPQ 308
+++ T + LPQ
Sbjct: 329 EWLVDNGTSMESLPQ 343
>gi|308811701|ref|XP_003083158.1| Transcription initiation factor IIB [Oryza sativa (ISS)
[Ostreococcus tauri]
gi|116055037|emb|CAL57433.1| Transcription initiation factor IIB [Oryza sativa (ISS)
[Ostreococcus tauri]
Length = 395
Score = 203 bits (516), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 124/311 (39%), Positives = 182/311 (58%), Gaps = 25/311 (8%)
Query: 3 INKVC--CYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSN---EKSGVDP 57
++C C H ++ED+ +GD IC+ECGLV+ R+ID SEWRTF + +K+G DP
Sbjct: 23 FTQICPKCATH--TAIVEDHASGDLICTECGLVIESRIIDECSEWRTFGDGDKDKNGADP 80
Query: 58 SRVGGPENPLLNGSDLSTMIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSM 117
SR G N +L G LST IG D +++ +++ NR MN D+AL+ A I
Sbjct: 81 SRTVGATNVMLTGGGLSTTIGKNP-DGTYNA-TLTRLHNR-GMNP-DKALIAAFHSIGEF 136
Query: 118 ADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVS 177
AD + + + + D A +L++ V + G+SN A+ +ACLYIA RQEG+ RTFKE+C +
Sbjct: 137 ADAMGMNRVVKDGACDLYRMVTSAHSTLGKSNAAMYAACLYIAARQEGMTRTFKEVCGAA 196
Query: 178 K-ISKKEIGRCFKLILKA-----LETSVDLITTGDFMSRFCSNLSL-PNMVQKAATHIAR 230
+ + KEIGRC+K ILK ++ + +IT +RFC NL + + K +HI R
Sbjct: 197 QGTTVKEIGRCYKFILKVCDGLNMQMNEQMITPELLTNRFCGNLGIGEHEYLKLCSHIVR 256
Query: 231 KAVELDIVPG----RSPISVAAAAIYMASQASS---DKRSQKEIGDIAGVAEVTIRQSYK 283
EL G + P SVAAA+I++++ DK S I +++G+AEVTIR S+
Sbjct: 257 TFKELRDSEGHRSEKQPASVAAASIFISAVVKGIHKDKASLFRISEVSGMAEVTIRTSFF 316
Query: 284 LMYPHASKLFP 294
M P+ASKL P
Sbjct: 317 DMVPYASKLLP 327
>gi|254565175|ref|XP_002489698.1| Transcription factor TFIIB, a general transcription factor
[Komagataella pastoris GS115]
gi|238029494|emb|CAY67417.1| Transcription factor TFIIB, a general transcription factor
[Komagataella pastoris GS115]
gi|328350117|emb|CCA36517.1| Transcription initiation factor IIB [Komagataella pastoris CBS
7435]
Length = 342
Score = 202 bits (515), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 116/316 (36%), Positives = 182/316 (57%), Gaps = 19/316 (6%)
Query: 1 MNINKVCCYEHPDAP-LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSN-EKSGVDPS 58
+N+ +C D P LIE + GD IC CGLV+ + ++D+ SEWRTF+N +++G DPS
Sbjct: 15 LNVALICRDCKVDPPELIERFSEGDVICGLCGLVLSEHIVDMRSEWRTFNNDDQNGDDPS 74
Query: 59 RVGGPENPLLNGSDLSTMIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMA 118
RVG +NPLL+G LST+I D + G +S+ QN + D AL A +I+ +
Sbjct: 75 RVGEAQNPLLDGDQLSTIIAYNT-DNTRMGRELSRAQNSTVADRKDSALQAAFAKISQLC 133
Query: 119 DRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSK 178
+ L + + A ++K V++ ++LKG+S ++I +A + +ACR+ VPR+FKE+ A++
Sbjct: 134 EGFQLPNIVQNGAKEVYKLVYNERSLKGKSQESIMAAAIGLACRKANVPRSFKELWALTD 193
Query: 179 ISKKEIGRCFKLILKALETSVDL-----------ITTGD-----FMSRFCSNLSLPNMVQ 222
+ K EIG+ FK+I K ++ L I T + RFCSNL L +
Sbjct: 194 VPKNEIGKVFKIIHKLIQQKHALAGGLLNVQNESIATTQTNAEALIGRFCSNLGLSRQIT 253
Query: 223 KAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSY 282
AA +IAR+ E+ ++ GRSP++VAA IYMA+ S +I AGV++ TI+ SY
Sbjct: 254 NAAEYIARRTKEVGVLAGRSPVTVAATVIYMAASIFDASISPAQIAQRAGVSDGTIKTSY 313
Query: 283 KLMYPHASKLFPQDFV 298
K +Y +L ++
Sbjct: 314 KYLYDKREELVDPQWI 329
>gi|343426216|emb|CBQ69747.1| probable SUA7-TFIIB subunit (transcription initiation factor),
factor E [Sporisorium reilianum SRZ2]
Length = 370
Score = 202 bits (513), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 124/340 (36%), Positives = 191/340 (56%), Gaps = 38/340 (11%)
Query: 1 MNINKVCCYEHPDAP-LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSR 59
+N+ +C D P L E++ +GD +C++CGLVVG+ +ID SEWRTF+NE G DPSR
Sbjct: 36 LNVRLICRDCKTDPPNLAEEFDSGDLVCADCGLVVGENIIDTRSEWRTFANE-DGDDPSR 94
Query: 60 VGGPENPLLNG--SDLSTMIGPGRGDASFDGFGMSKYQNRRTMN----SSDRALLNAIRE 113
VG NPLL+G L + IG G G G S+ +RTMN + DR +L+A +
Sbjct: 95 VGAASNPLLDGINEQLESRIGYRDG-----GTGASR-DLQRTMNRATGTRDRHMLDAFED 148
Query: 114 INSMADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEI 173
I D I+L +T+ D A +++V + K L+G+ DAI +A +Y+AC+ VPRTF EI
Sbjct: 149 IQRKCDSIHLPRTVSDVAKQAYRRVEEEKILRGKKPDAIIAAAIYVACKMNHVPRTFPEI 208
Query: 174 CAVSKISKKEIGRCFKLILKAL----------------------ETSVDLITTG--DFMS 209
C+++ +SKK IG+CFK + +A T + + TG D +
Sbjct: 209 CSLTSVSKKHIGQCFKEMQQAFGLNATGTGSVDGSRASANNSGTSTPIGIGPTGAADLVG 268
Query: 210 RFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGD 269
R+C++L L + ++ I + EL I+ GRSPI++AAA IY ++ + K I
Sbjct: 269 RYCNHLGLEMRITRSTEDITARVRELGILAGRSPITIAAACIYFSTLLWGVDKGAKRISQ 328
Query: 270 IAGVAEVTIRQSYKLMYPHASKLFPQDFVFHTPIHELPQL 309
AGV++VTI+ S+K + H K+ + + +P +L +L
Sbjct: 329 AAGVSDVTIKNSFKELLKHKEKIATPEILSKSPQMDLSRL 368
>gi|71021421|ref|XP_760941.1| hypothetical protein UM04794.1 [Ustilago maydis 521]
gi|46101016|gb|EAK86249.1| hypothetical protein UM04794.1 [Ustilago maydis 521]
Length = 375
Score = 202 bits (513), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 123/340 (36%), Positives = 191/340 (56%), Gaps = 38/340 (11%)
Query: 1 MNINKVCCYEHPDAP-LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSR 59
+N+ +C D P L E++ +GD +C++CGLVVG+ +ID SEWRTF+NE G DPSR
Sbjct: 41 LNVRLICRDCKTDPPNLAEEFESGDLVCADCGLVVGENIIDTRSEWRTFANE-DGDDPSR 99
Query: 60 VGGPENPLLNG--SDLSTMIGPGRGDASFDGFGMSKYQNRRTMN----SSDRALLNAIRE 113
VG NPLL+G L + IG G G G S+ +RTMN + DR +L+A +
Sbjct: 100 VGAASNPLLDGINEQLESRIGYRDG-----GTGASR-DLQRTMNRATGTRDRNMLDAFED 153
Query: 114 INSMADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEI 173
I D I+L +T+ D A +++V + K L+G+ DAI +A +Y+AC+ VPRTF EI
Sbjct: 154 IQRKCDSIHLPRTVSDVAKQAYRRVEEEKILRGKKPDAIIAAAIYVACKMNHVPRTFPEI 213
Query: 174 CAVSKISKKEIGRCFKLILKAL----------------------ETSVDLITTG--DFMS 209
C+++ +SKK IG+CFK + +A T + + TG D +
Sbjct: 214 CSLTSVSKKHIGQCFKEMQQAFGLNATGTGSVDGSRASANNSGTSTPIGIGPTGAADLVG 273
Query: 210 RFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGD 269
R+C++L L + ++ I + EL I+ GRSPI++AAA IY ++ + K I
Sbjct: 274 RYCNHLGLEMRITRSTEDITARVRELGILAGRSPITIAAACIYFSTLLWGVDKGAKRISQ 333
Query: 270 IAGVAEVTIRQSYKLMYPHASKLFPQDFVFHTPIHELPQL 309
AGV++VTI+ S+K + H K+ + + +P ++ +L
Sbjct: 334 AAGVSDVTIKNSFKELLKHKDKIATPEILSKSPQMDMSRL 373
>gi|402226301|gb|EJU06361.1| TFIIB-domain-containing protein [Dacryopinax sp. DJM-731 SS1]
Length = 358
Score = 202 bits (513), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 115/324 (35%), Positives = 184/324 (56%), Gaps = 33/324 (10%)
Query: 1 MNINKVC--CYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPS 58
+N+ +C C + P ++E Y +GD +C CG+V+GDR+ID SEWRTF+NE+ G DPS
Sbjct: 26 LNVRLICPEC-KDPVPNIVEQYSSGDLVCGSCGMVLGDRIIDTRSEWRTFANEE-GDDPS 83
Query: 59 RVGGPENPLLNGSD-LSTMIGPGRGDASFDGFGMSKYQNRRTMNSS----DRALLNAIRE 113
RVG +PL++G + L T+I G G G+++ R + + + ++ ++
Sbjct: 84 RVGAASDPLMDGMEQLDTVISFQDG-----GSGLARELQRASAKTQAFKDGKTMMEGFKK 138
Query: 114 INSMADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEI 173
I+ D I+L K I D A L+K+V + + LKG+ DAI +AC++IACRQ VPRTF+EI
Sbjct: 139 ISQFCDSISLPKVISDTAKQLYKRVEEDRILKGKRMDAIVAACIFIACRQGHVPRTFREI 198
Query: 174 CAVSKISKKEIGRC-------FKLILKALETS----VDLITTG--------DFMSRFCSN 214
C ++K++KK +G+C F+L + TS VD+ G + + RFC++
Sbjct: 199 CNITKVNKKALGQCYKAMEAYFRLNVSGGATSSTNRVDIHLAGSGSKASAEELIPRFCNH 258
Query: 215 LSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVA 274
L LP ++++ I A E + GRSPIS+A AIY + + ++I + V+
Sbjct: 259 LGLPVSLERSCVQIIVNAREQGVNAGRSPISIAGGAIYFTTHLLGQAKHARDISRVVNVS 318
Query: 275 EVTIRQSYKLMYPHASKLFPQDFV 298
E TI+ YK KL P++++
Sbjct: 319 ESTIKLVYKGFVAAKEKLVPKEWL 342
>gi|388857243|emb|CCF49256.1| probable SUA7-TFIIB subunit (transcription initiation factor),
factor E [Ustilago hordei]
Length = 375
Score = 202 bits (513), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 124/340 (36%), Positives = 191/340 (56%), Gaps = 38/340 (11%)
Query: 1 MNINKVCCYEHPDAP-LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSR 59
+N+ +C D P L E++ +GD +C++CGLVVG+ +ID SEWRTF+NE G DPSR
Sbjct: 41 LNVRLICRDCKTDPPNLAEEFESGDLVCADCGLVVGENIIDTRSEWRTFANE-DGDDPSR 99
Query: 60 VGGPENPLLNG--SDLSTMIGPGRGDASFDGFGMSKYQNRRTMN----SSDRALLNAIRE 113
VG NPLL+G L + IG G G G S+ +RTMN + DR +L+A +
Sbjct: 100 VGAASNPLLDGINEQLESRIGYRDG-----GTGASR-DLQRTMNRATGTRDRNMLDAFED 153
Query: 114 INSMADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEI 173
I D I+L +T+ D A +++V + K L+G+ DAI +A +Y+AC+ VPRTF EI
Sbjct: 154 IQRKCDSIHLPRTVSDVAKQAYRRVEEEKILRGKKPDAIIAAAIYVACKMNHVPRTFPEI 213
Query: 174 CAVSKISKKEIGRCFKLILKAL----------------------ETSVDLITTG--DFMS 209
C+++ +SKK IG+CFK + +A T + + TG D +
Sbjct: 214 CSLTSVSKKHIGQCFKEMQQAFGLNATGTGSVDGSRASANNSGTSTPIGIGPTGAADLVG 273
Query: 210 RFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGD 269
R+C++L L V ++ I + EL I+ GRSPI++AAA IY ++ + K I
Sbjct: 274 RYCNHLGLEMRVTRSTEDITARVRELGILAGRSPITIAAACIYFSTLLWGIDKGAKRISQ 333
Query: 270 IAGVAEVTIRQSYKLMYPHASKLFPQDFVFHTPIHELPQL 309
AGV++VTI+ S+K + H K+ + + +P ++ +L
Sbjct: 334 AAGVSDVTIKNSFKELLKHKDKVATPEVLAKSPQMDISRL 373
>gi|358400578|gb|EHK49904.1| hypothetical protein TRIATDRAFT_297298 [Trichoderma atroviride IMI
206040]
Length = 348
Score = 201 bits (512), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 107/312 (34%), Positives = 177/312 (56%), Gaps = 25/312 (8%)
Query: 8 CYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNE-KSGVDPSRVGGPENP 66
C E+P LIE++ +GD +C CG+VVG R+ID SEWRTF+N+ + G DPSRVGGP++
Sbjct: 27 CKEYP-PNLIEEFSSGDMVCQSCGVVVGTRIIDTRSEWRTFANDDQGGDDPSRVGGPQDE 85
Query: 67 LLNGSDLSTMIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADRINLTKT 126
+ G L+T + A +S+ QN + + + L+ A +EI ++ + I++
Sbjct: 86 FVEGQHLATTVAFSESKAHK---ALSRTQNNANQDKAQKGLMQAYKEIVALCETIHMGAN 142
Query: 127 IVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGR 186
+ + A ++FK V K +KG+ +A+ + C++IACRQ VPRTF+EI ++ +SKKE+GR
Sbjct: 143 VSNAAKHIFKLVDKHKFMKGKPQEAVIAGCIFIACRQNNVPRTFREIFNLTSVSKKEVGR 202
Query: 187 CFKLILKALE----------------TSVDLITTG--DFMSRFCSNLSLPNM--VQKAAT 226
FK + L+ T+ + + G D R+ S L N + K +
Sbjct: 203 VFKQLQNFLQKIQDNEGESGSGLNTVTNYENTSVGAEDLCGRYVSQLGFKNQQKISKISR 262
Query: 227 HIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMY 286
+A +A ++ + GRSP+SVAAA IYMA + RS I GV++ T++ +YK ++
Sbjct: 263 DLAEQATDISALAGRSPLSVAAACIYMACHLMGEPRSSAPIAKQTGVSDGTVKTAYKFLF 322
Query: 287 PHASKLFPQDFV 298
+L ++++
Sbjct: 323 AARDQLIKKEWL 334
>gi|358060583|dbj|GAA93702.1| hypothetical protein E5Q_00347 [Mixia osmundae IAM 14324]
Length = 362
Score = 201 bits (511), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 121/316 (38%), Positives = 190/316 (60%), Gaps = 30/316 (9%)
Query: 10 EHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPL-- 67
+ P L E+Y +GD +C CGLV+ DR++D SEWRTF+ ++ G DPSRVGGP +PL
Sbjct: 37 QDPTPNLAEEYSSGDLVCRSCGLVLSDRIVDERSEWRTFAGDEKGDDPSRVGGP-SPLAG 95
Query: 68 LNGS--DLSTMIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADRINLTK 125
L GS ST+I G++ + K R S ++ L+ + +EI+++ ++INL
Sbjct: 96 LGGSADQFSTIISDRDGNSGL-AKELQKAALRTQRASGEKNLVGSYKEISAVCEKINLPT 154
Query: 126 TIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIG 185
+ D A L+K+ D K LKG+SNDAI +AC++IACRQ GV RTFKEI +S++ KK +G
Sbjct: 155 MVSDIAKQLYKRQDDEKLLKGKSNDAIIAACIFIACRQAGVSRTFKEIVELSRVPKKVLG 214
Query: 186 RCFKLILKALETSVDLITTG-----------------------DFMSRFCSNLSLPNMVQ 222
+CFK ILK++ + D+ T G D + RFC++L + +Q
Sbjct: 215 QCFK-ILKSVFDTNDVGTGGITADGTVVTDTTHRVNLGGNGPEDTIVRFCNHLGMSAYIQ 273
Query: 223 KAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSY 282
+ RK + L ++ GRSP++VA + IY+ + + RS ++IG++AGV + TIR +Y
Sbjct: 274 SRGREVVRKVMNLGVLDGRSPVTVAGSCIYLTAHLFGEPRSARDIGEVAGVTDGTIRMAY 333
Query: 283 KLMYPHASKLFPQDFV 298
+L++PH ++ Q ++
Sbjct: 334 RLIHPHLDEVIDQAWI 349
>gi|389625125|ref|XP_003710216.1| transcription initiation factor IIB [Magnaporthe oryzae 70-15]
gi|351649745|gb|EHA57604.1| transcription initiation factor IIB [Magnaporthe oryzae 70-15]
gi|440464829|gb|ELQ34194.1| transcription initiation factor IIB [Magnaporthe oryzae Y34]
gi|440490541|gb|ELQ70086.1| transcription initiation factor IIB [Magnaporthe oryzae P131]
Length = 371
Score = 201 bits (511), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 114/307 (37%), Positives = 181/307 (58%), Gaps = 30/307 (9%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLST 75
L E+ +GD +C+ECGLVVG R++D+GSEWRTF+N+++G DPSRVG N + S L T
Sbjct: 33 LQEEVSSGDIVCTECGLVVGARIVDMGSEWRTFANDEAGDDPSRVGDAGNEIYGPSALET 92
Query: 76 MIGPGRGD-ASFDGFGMSKYQNRRTMNSSDRALLNA-IREINSMADRINLTKTIVDRANN 133
+ R AS+ N++ N +A +NA + +I + D+I+ ++ +A +
Sbjct: 93 KVDMRRDQGASYKIMKSLNAANKKIQNEKGQAAINAGMAKIKDLVDKIHGGGNVIKQAQS 152
Query: 134 LFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGRCFKLILK 193
LF++V + K LKG+S DA + C++IACR E VPRTF+EI A++ +SKKEIGR +K + +
Sbjct: 153 LFREVEEAKALKGKSADAAVAGCIFIACRMEKVPRTFREIHALTNVSKKEIGRTYKALEE 212
Query: 194 ALE----------TSVD------------LITTG----DFMSRFCSNLS--LPNMVQKAA 225
++ +VD + T G +R+CS L + ++ ++ A
Sbjct: 213 YVKKVNYENRGGAAAVDHKMPTADDDDDDMATKGTTAESLCTRYCSILGFRVSHLAERVA 272
Query: 226 THIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLM 285
H+ARK+ + + GRSP+SVAAA IYM S + R+ K+I +AGV++ TI+ +YK +
Sbjct: 273 MHLARKSSSVADLAGRSPLSVAAACIYMMSHLIGEPRTSKDIAVVAGVSDGTIKTAYKFL 332
Query: 286 YPHASKL 292
+L
Sbjct: 333 LAAKDEL 339
Score = 42.4 bits (98), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 59/130 (45%), Gaps = 19/130 (14%)
Query: 94 YQNRRTMNSSDRALLNAIREINSMADRINLTKTIVDR----------------ANNLFKQ 137
Y+NR + D + A + + MA + +++ R A +L ++
Sbjct: 219 YENRGGAAAVDHKMPTADDDDDDMATKGTTAESLCTRYCSILGFRVSHLAERVAMHLARK 278
Query: 138 VHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGRCFKLILKALET 197
+L GRS ++A+AC+Y+ G PRT K+I V+ +S I +K +L A +
Sbjct: 279 SSSVADLAGRSPLSVAAACIYMMSHLIGEPRTSKDIAVVAGVSDGTIKTAYKFLLAAKD- 337
Query: 198 SVDLITTGDF 207
+L G+F
Sbjct: 338 --ELCRDGEF 345
>gi|402080319|gb|EJT75464.1| transcription initiation factor IIB [Gaeumannomyces graminis var.
tritici R3-111a-1]
Length = 348
Score = 201 bits (510), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 117/316 (37%), Positives = 181/316 (57%), Gaps = 22/316 (6%)
Query: 2 NINKVCCYEHPDAP--LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSR 59
N+N + + D P L E+ +GD +CSECGLVVGDR++D SEWRTF+N++ G DPSR
Sbjct: 16 NLNNIVQCKDCDRPTALFEESSSGDLVCSECGLVVGDRIVDTRSEWRTFANDEGGDDPSR 75
Query: 60 VGGPENPLLNGSDLSTMIGPGRG-DASFDGFGMSKYQNRRTMNSSDRALLNA-IREINSM 117
VG +P+ N L T I RG +AS G N++T N +A L A +I+
Sbjct: 76 VGDAGDPIWNDGSLETKIDTSRGQNASGRIIGRLNNANKKTQNDRGQAGLQASFAKISEH 135
Query: 118 ADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVS 177
D++ K ++D A +LFK V D K LKG+S +A+ + C++IACR V RTF+EI A++
Sbjct: 136 VDKLQGGKPVLDYARHLFKMVDDAKFLKGKSPEAVIAGCIFIACRANNVGRTFREIHALT 195
Query: 178 KISKKEIGRCFKLILKALETSVDLITTG----------------DFMSRFCSNLSLPN-- 219
+SKKEIGR +K + ++ + + G + R+C++L +
Sbjct: 196 SVSKKEIGRVYKSLEDFVKRNPEATKNGLNAHADEDAKGPTPAEELCIRYCASLGFKSTY 255
Query: 220 MVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIR 279
+K + +A ++ + + GRSP+SVAAA IYMAS +D ++ KEI AGV++ TI+
Sbjct: 256 TAEKISRRLAERSSSVADLAGRSPLSVAAACIYMASFLIADPKTTKEIAQTAGVSDGTIK 315
Query: 280 QSYKLMYPHASKLFPQ 295
+Y+ + +L +
Sbjct: 316 TAYRFLLQAKDQLVDE 331
>gi|269862581|ref|XP_002650895.1| transcription initiation factor IIB [Enterocytozoon bieneusi H348]
gi|220065455|gb|EED43163.1| transcription initiation factor IIB [Enterocytozoon bieneusi H348]
Length = 252
Score = 201 bits (510), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 105/249 (42%), Positives = 156/249 (62%), Gaps = 8/249 (3%)
Query: 2 NINKVCCYEHPDA-PLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRV 60
N+NK C E + +IEDYR G +C +CG V ++++D G EWR FS+ G DPSRV
Sbjct: 10 NLNK--CNECGEVNSVIEDYRNGFNVCGKCGCVFREKIVDEGGEWRNFSDSTKG-DPSRV 66
Query: 61 GGPENPLLNGSDLSTMIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADR 120
G NP L+ L T+I G G S++ +++ Q + M DR L N + I S +R
Sbjct: 67 GSAINPFLDVEQLDTVISAGSGANSYN---LNRIQMKNYMRGPDRVLKNGFKLIQSFCER 123
Query: 121 INLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKIS 180
LT+TI+D+A +FK V K LKG++ + AC+YIAC+ EG PRTFKEI ++ +
Sbjct: 124 GFLTQTIIDKAQAIFKDVESKKLLKGKNLEGCIGACIYIACKTEGCPRTFKEISVITVVP 183
Query: 181 KKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPG 240
K+EIG+C+KLI K ++T+ ++ T D + RFCS+L+L +Q A +IA+K ++ + G
Sbjct: 184 KREIGKCYKLISKEIDTT-GIMATADIVGRFCSDLNLNAKIQNTARYIAKKVQDIGCLAG 242
Query: 241 RSPISVAAA 249
RSP S+A+A
Sbjct: 243 RSPDSIASA 251
>gi|303284018|ref|XP_003061300.1| transcription initiation factor [Micromonas pusilla CCMP1545]
gi|226457651|gb|EEH54950.1| transcription initiation factor [Micromonas pusilla CCMP1545]
Length = 370
Score = 200 bits (509), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 122/310 (39%), Positives = 185/310 (59%), Gaps = 21/310 (6%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSN-EKSGVDPSRVGGPENPLLNGSDLS 74
+IED++ GD +C+ECGLV+ VID SEWRTFS+ +K G DPSR GP N +L L
Sbjct: 28 IIEDHQQGDLVCTECGLVLEQGVIDETSEWRTFSDSDKGGADPSRTAGPTNRMLAHGGLG 87
Query: 75 TMIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADRINLTKTIVDRANNL 134
T IG D +++ +++ NR + D+AL+ A +IN +AD + +T + D A ++
Sbjct: 88 TSIGRNP-DGTYNQT-LTRLHNRGA--NPDKALIAAFGKINELADHLGVTSVVKDGACDV 143
Query: 135 FKQ-VHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEIC-AVSKISKKEIGRCFKLIL 192
++ V G ++ G+S +A+ +ACLYI+CRQEG RTFKEIC + KEIG+C+K I+
Sbjct: 144 YRMVVKPGVSIAGKSQNAMFAACLYISCRQEGTNRTFKEICGGAVNTTVKEIGKCYKFIV 203
Query: 193 K---ALETSV--DLITTGDFMSRFCSNLSLPNM-VQKAATHIARKAVELDIVPG----RS 242
K L T++ +IT +RFC NL L N+ K AT + L + G +
Sbjct: 204 KTIDGLNTTMMEQMITPEKLTNRFCGNLGLANLEFLKLATTVIGTFNNLRLSEGHKSEKQ 263
Query: 243 PISVAAAAIYMASQASSDKRSQ---KEIGDIAGVAEVTIRQSYKLMYPHASKLFPQDFVF 299
P SVAAAAI++ Q DK+ + ++I +++G+AE TI SY MYP+A+++ P+ +V
Sbjct: 264 PASVAAAAIWLCVQI-MDKQHEITLRKISEVSGMAETTITTSYVDMYPYATRMLPRAYVE 322
Query: 300 HTPIHELPQL 309
+ P L
Sbjct: 323 RAARLQAPDL 332
>gi|451996801|gb|EMD89267.1| hypothetical protein COCHEDRAFT_1205430 [Cochliobolus
heterostrophus C5]
Length = 375
Score = 200 bits (509), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 115/335 (34%), Positives = 177/335 (52%), Gaps = 40/335 (11%)
Query: 1 MNINKVC--CYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNE------- 51
+N+ +C C E+P L+E++ AGD IC CG V+ DR+ID SEWRTFSN+
Sbjct: 32 LNVALICPDCKENP-PNLVEEFSAGDTICGSCGRVLADRIIDTRSEWRTFSNDGKWRPLT 90
Query: 52 ---KSGVDPSRVGGPENPLLNGSDLSTMIGPGRGDASFDGFGMSKYQNRRTMNSSDRALL 108
+ DPSR+G NPLL+GS L T IG GD +S+ N+ + ++AL
Sbjct: 91 CTNQGNDDPSRIGDAANPLLHGSQLQTEIG--FGDGGMRVRDLSRAHNKSNHDKVNKALQ 148
Query: 109 NAIREINSMADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPR 168
A +I ++ D N+++ + A L+K D K KG+S DAI + C++IACR+ R
Sbjct: 149 AAYGQITALCDSQNISRPTAETAKMLYKMTDDAKLFKGKSQDAIIAGCIFIACRKHDQQR 208
Query: 169 TFKEICAVSKISKKEIGRCFKLILKALETS----------------VDLI---------T 203
+F+EI ++ +SKKE+GR FK++ ++ S V+L+ +
Sbjct: 209 SFREIFKMTNVSKKEVGRTFKVLEAFIQKSQNSGPSVAGNGAVIDTVNLLNQKGGTTATS 268
Query: 204 TGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRS 263
M R C+ L+L VQ A A + + GRSP+S+A A +Y+ S +S
Sbjct: 269 AASLMPRACAKLALGTQVQMVAEECADQVAHYGVAAGRSPLSIAGACLYLVSHLMGQPKS 328
Query: 264 QKEIGDIAGVAEVTIRQSYKLMYPHASKLFPQDFV 298
KEIG V++ TIR +YKLM+ K+ +++
Sbjct: 329 PKEIGLAVEVSDGTIRTAYKLMHMEQDKIIKDEWI 363
>gi|340521242|gb|EGR51477.1| transcription factor [Trichoderma reesei QM6a]
Length = 363
Score = 200 bits (508), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 106/312 (33%), Positives = 177/312 (56%), Gaps = 25/312 (8%)
Query: 8 CYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNE-KSGVDPSRVGGPENP 66
C E+P LIE++ +GD +C+ CG+VVG R+ID SEWRTF+N+ + G DPSRVGGP++
Sbjct: 41 CKEYP-PDLIEEFSSGDMVCNSCGVVVGTRIIDTRSEWRTFANDDQGGDDPSRVGGPQDE 99
Query: 67 LLNGSDLSTMIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADRINLTKT 126
+ G L+T + A +S+ QN + + + L+ A +EI ++ + I++
Sbjct: 100 FVEGQHLATTVAFSESKAHK---ALSRTQNNANQDKAQKGLMQAYKEIVALCETIHMGAN 156
Query: 127 IVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGR 186
+ + A ++FK V K +KG+ +A+ + C++IACRQ VPRTF+EI ++ +SKKE+GR
Sbjct: 157 VSNAAKHIFKLVDKHKFMKGKPQEAVIAGCIFIACRQNNVPRTFREIFNLTSVSKKEVGR 216
Query: 187 CFKLILKALE----------TSVDLIT--------TGDFMSRFCSNLSLPNM--VQKAAT 226
FK + L+ T ++ +T D R+ S L N + K +
Sbjct: 217 VFKQLQNFLQKIQDTEGEGATGLNTVTNYENTSVGAEDLCGRYVSQLGFKNQQKISKISR 276
Query: 227 HIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMY 286
+A +A ++ + GRSP+SVAAA IYMA + R I GV++ T++ +YK ++
Sbjct: 277 DLAEQATDISALAGRSPLSVAAACIYMACHLMGEPRPSAPIAKQTGVSDGTVKTAYKFLF 336
Query: 287 PHASKLFPQDFV 298
+L ++++
Sbjct: 337 AVRDQLIKKEWL 348
>gi|50547791|ref|XP_501365.1| YALI0C02563p [Yarrowia lipolytica]
gi|49647232|emb|CAG81664.1| YALI0C02563p [Yarrowia lipolytica CLIB122]
Length = 324
Score = 199 bits (507), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 122/299 (40%), Positives = 180/299 (60%), Gaps = 10/299 (3%)
Query: 7 CCYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVD-PSRVGGPEN 65
C PD ++E + GD +C +CGLV+ DRV+D SEWRTFSN+ G D PSRVG N
Sbjct: 16 CKILPPD--IVERFAEGDMVCGQCGLVLSDRVVDTRSEWRTFSNDDQGSDDPSRVGDAMN 73
Query: 66 PLLNGSDLSTMIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADRINLTK 125
PLL GS L+T+I G +S G +++ Q+R + D AL +I+ + D I+L +
Sbjct: 74 PLLEGSQLNTIISFGAPGSSV-GRDLNRTQSRSLQDKKDAALSAVYAKISQICDGISLPR 132
Query: 126 TIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIG 185
+ D A ++K VHD K L+G++ DAI + ++IACR V RTF+EI A++ +SKKEI
Sbjct: 133 VVSDAAKEVYKLVHDDKRLRGKTPDAIIATVIFIACRHANVQRTFQEIGALTNVSKKEIR 192
Query: 186 RCFKLILKALE-TSVDLITT-----GDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVP 239
R +L+ + LE T++ + G M R+CS+L L + V A I ++A E+ +
Sbjct: 193 RTLELMKRLLEGTNIQAFRSTQTNPGALMPRYCSHLGLNSQVANLAEDIVKRAKEIGTLD 252
Query: 240 GRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKLFPQDFV 298
GRSPISVAAAAIYMA+ + S + + + GV++ TI+ SYK +Y KL + +
Sbjct: 253 GRSPISVAAAAIYMAAALYGNDMSAQRVSEKTGVSDGTIKTSYKHLYEAREKLVSKQLL 311
>gi|400595996|gb|EJP63780.1| transcription factor TFIIB [Beauveria bassiana ARSEF 2860]
Length = 348
Score = 199 bits (506), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 108/318 (33%), Positives = 182/318 (57%), Gaps = 26/318 (8%)
Query: 4 NKVCCYEHPDAP--LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNE-KSGVDPSRV 60
N +CC + + P L+E++ +GD +C CG+VVG R+ID SEWRTF+N+ ++G DPSRV
Sbjct: 20 NVLCCPDCREIPPNLVEEFSSGDMVCQSCGVVVGTRIIDTRSEWRTFANDDQNGDDPSRV 79
Query: 61 GGPENPLLNGSDLSTMIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADR 120
GGP++ + G L+T + S + + QN + + L+ A +EI S+ +
Sbjct: 80 GGPQDEFVEGQQLATSVAFSE---SRQHKNLLRVQNNTNQDKQQKGLMQAYKEIVSLCEA 136
Query: 121 INLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKIS 180
IN+ + + + A ++FK V K +KG+ +A+ + C++IACRQ VPRTF+EI ++ +S
Sbjct: 137 INMGQNVSNAAKHIFKLVDKYKFMKGKPQEAVIAGCIFIACRQNNVPRTFREIFNLTSVS 196
Query: 181 KKEIGRCFKLILKALE----------TSVDLITT--------GDFMSRFCSNLSLPNM-- 220
KKE+GR FK + L+ T ++ +T D SR+ S L +
Sbjct: 197 KKEVGRVFKQLQNFLQKLQDTEGEGATGLNTVTNYENTSVGAEDLCSRYVSQLGFKSQQK 256
Query: 221 VQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQ 280
+ K + +A +A ++ + GRSP+SVAAA IYMA + R+ I AGV++ T++
Sbjct: 257 ISKISRDLAEQANDISALAGRSPLSVAAACIYMACHLVGEPRASLPIAKQAGVSDGTVKT 316
Query: 281 SYKLMYPHASKLFPQDFV 298
+YK ++ +L ++++
Sbjct: 317 AYKHLFAARERLIKKEWL 334
>gi|412985634|emb|CCO19080.1| predicted protein [Bathycoccus prasinos]
Length = 396
Score = 199 bits (505), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 121/310 (39%), Positives = 177/310 (57%), Gaps = 19/310 (6%)
Query: 3 INKVCCYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSN-EKSGVDPSRVG 61
+++C L+ED+ GD IC+ECGLVV R ID SEWRTFS+ +K+G DPSR
Sbjct: 14 FSQICSQCKVQTTLVEDHAQGDLICTECGLVVESRTIDECSEWRTFSDSDKAGGDPSRTV 73
Query: 62 GPENPLLNGSDLSTMIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADRI 121
G N +L+G LST IG D +F+ +++ NR + D+ L+ A +I MADR+
Sbjct: 74 GATNNMLSGGGLSTTIGRNP-DGTFNQT-LTRLHNRE--GNPDKVLMAAFSQIGDMADRM 129
Query: 122 NLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISK 181
+ +TI A L+K V + +G+S+ A+ +ACLYIACRQEG RTFKEIC + S
Sbjct: 130 AMNQTIKSGACELYKVVTSSHSTQGKSSVAMFAACLYIACRQEGKTRTFKEICGAAVGST 189
Query: 182 -KEIGRCFKLILKA-------LETSVDLITTGDFMSRFCSNLSLPN----MVQKAATHIA 229
KEIGRC++ I++ ++ + +IT +RFC NL L N V +A
Sbjct: 190 VKEIGRCYRFIIRVCEGLDLQMQMNEQMITPELLTNRFCGNLGLANSEFIRVCSSAIQKF 249
Query: 230 RKAVELDIVPGRSPISVAAAAIYMASQA--SSDKRSQKEIGDIAGVAEVTIRQSYKLMYP 287
R+ + + P S+AAAAIY+A+ D + +I ++G+AE TIR SY M P
Sbjct: 250 REIKTGEGYSQKQPASIAAAAIYLATNILDKKDIANVSQISAVSGMAEQTIRNSYVDMLP 309
Query: 288 HASKLFPQDF 297
+ +L P+ +
Sbjct: 310 YLERLLPEAY 319
>gi|346322890|gb|EGX92488.1| transcription initiation protein [Cordyceps militaris CM01]
Length = 347
Score = 199 bits (505), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 108/317 (34%), Positives = 181/317 (57%), Gaps = 25/317 (7%)
Query: 4 NKVCCYEHPDAP--LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNE-KSGVDPSRV 60
N +CC + + P L+E++ +GD +C CG+VVG R+ID SEWRTF+N+ ++G DPSRV
Sbjct: 20 NVLCCPDCREIPPNLVEEFSSGDMVCQSCGVVVGTRIIDTRSEWRTFANDDQNGDDPSRV 79
Query: 61 GGPENPLLNGSDLSTMIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADR 120
GGP++ + G L+T + S + + QN + R L+ A +EI S+ +
Sbjct: 80 GGPQDEFVEGQQLATSVAFSE---SRQHKNLLRVQNNTNQDKQQRGLMQAYKEIVSLCEA 136
Query: 121 INLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKIS 180
IN+ + + + A ++FK V K +KG+ +A+ + C++IACRQ VPRTF+EI ++ +S
Sbjct: 137 INMGQNVSNAAKHIFKLVDKYKFMKGKPQEAVIAGCIFIACRQNNVPRTFREIFNLTSVS 196
Query: 181 KKEIGRCFKLILKALE---------TSVDLITT--------GDFMSRFCSNLSLP--NMV 221
KKE+GR FK + L+ T ++ +T D SR+ S + +
Sbjct: 197 KKEVGRVFKQLQNFLQKLQDTEGEATGLNTVTNYENTSVGAEDLCSRYVSQIGFKAQQKI 256
Query: 222 QKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQS 281
K + +A +A ++ + GRSP+SVAAA IYMA + R+ I AGV++ T++ +
Sbjct: 257 SKISRELAEQANDIAALAGRSPLSVAAACIYMACHLVGEPRASLPIAKQAGVSDGTVKTA 316
Query: 282 YKLMYPHASKLFPQDFV 298
YK ++ +L ++++
Sbjct: 317 YKHLFVARERLIKKEWL 333
>gi|212526306|ref|XP_002143310.1| transcription initiation protein [Talaromyces marneffei ATCC 18224]
gi|210072708|gb|EEA26795.1| transcription initiation protein [Talaromyces marneffei ATCC 18224]
Length = 341
Score = 198 bits (503), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 118/308 (38%), Positives = 170/308 (55%), Gaps = 22/308 (7%)
Query: 8 CYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNE-KSGVDPSRVGGPENP 66
C E P P +E + + +C CGLV+ DR ID+ SEWRTFSN+ ++ DPSRVG N
Sbjct: 26 CKEFP--PNLEFPGSHETVCGSCGLVLADREIDIHSEWRTFSNDDQNNDDPSRVGETSNI 83
Query: 67 LLNGSDLSTMIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADRINLTKT 126
LLNG+ L T I G A+ + + QN+ + +++AL+ A +EI ++ D N+ K
Sbjct: 84 LLNGNQLETSIAGGATGAARQ---LYRAQNKLSSEKNNKALMAAYKEIGALCDGFNIQKI 140
Query: 127 IVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGR 186
+ D A LFK V D K KG+S D I + C++IACRQ PRTF EI AV+K+S+KEIGR
Sbjct: 141 VADTAKYLFKIVDDHKAFKGKSQDVIIAGCIFIACRQCQAPRTFSEIFAVTKVSRKEIGR 200
Query: 187 CFKLILKAL------ETSVDLITTG----------DFMSRFCSNLSLPNMVQKAATHIAR 230
+K + K T+V G D RF S L L +A ++
Sbjct: 201 IYKSLEKFFTAQNIERTAVVGADAGFKQTTSTKPSDLCERFGSFLGLDYRTWHSAADLSD 260
Query: 231 KAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHAS 290
+ + + GRSP+S+ AA +YM S +S KEI + GV++ TIR +YK +Y
Sbjct: 261 RVTKDGDLAGRSPLSIVAACLYMVSHLCGVPKSAKEISAVVGVSDGTIRGAYKQLYAERD 320
Query: 291 KLFPQDFV 298
+L +F+
Sbjct: 321 RLIDDEFI 328
>gi|320582171|gb|EFW96389.1| general transcription factor TFIIB [Ogataea parapolymorpha DL-1]
Length = 338
Score = 197 bits (502), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 113/317 (35%), Positives = 175/317 (55%), Gaps = 21/317 (6%)
Query: 1 MNINKVC--CYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNE-KSGVDP 57
+NI VC C +P ++E + GD +C+ CGLV+ R+ID SEWRTF+N+ ++G DP
Sbjct: 13 LNITLVCPECKVYP-PEIVERHSEGDIVCALCGLVLSSRIIDTRSEWRTFANDDQNGDDP 71
Query: 58 SRVGGPENPLLNGSDLSTMIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSM 117
SRVG N L+ LST+I G D + +++ QNR ++ D AL +A +I+ +
Sbjct: 72 SRVGEATNGALDSDQLSTVISAGV-DGNRAAKELNRIQNRSVVDRKDYALQSAYSKISQL 130
Query: 118 ADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVS 177
D L + + D A ++K VHD K L+G+S +AI +A ++ CR+ VPRT+ EI A++
Sbjct: 131 CDGYQLPRVVQDGAKEVYKLVHDDKMLRGKSQEAIMAASIFFGCRKADVPRTYNEIWALT 190
Query: 178 KISKKEIGRCFKLILKALE----------------TSVDLITTGDFMSRFCSNLSLPNMV 221
+ KK+IG+ FK+I + ++ S D + RFCS+L L +
Sbjct: 191 NVPKKDIGKVFKIIKQIIQRKDAEQDGLITRRNNNISTTQTNPEDLVGRFCSHLGLSPQI 250
Query: 222 QKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQS 281
+A HIAR EL ++ GRSP ++AA IY ++ + I + GV+E TI+ S
Sbjct: 251 TTSAQHIARTLKELGVLEGRSPTTIAATVIYFSTAIFKQQIPLSRISEKTGVSEGTIKSS 310
Query: 282 YKLMYPHASKLFPQDFV 298
Y M KL Q ++
Sbjct: 311 YVHMSAARDKLVDQSWI 327
>gi|443900112|dbj|GAC77439.1| transcription initiation factor TFIIB [Pseudozyma antarctica T-34]
Length = 375
Score = 197 bits (502), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 122/340 (35%), Positives = 189/340 (55%), Gaps = 38/340 (11%)
Query: 1 MNINKVCCYEHPDAP-LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSR 59
+N+ +C D P L E++ +GD +C++CGLVVG+ +ID SEWRTF+NE G DPSR
Sbjct: 41 LNVRLICRDCKTDPPNLAEEFDSGDLVCADCGLVVGENIIDTRSEWRTFANE-DGDDPSR 99
Query: 60 VGGPENPLLNG--SDLSTMIGPGRGDASFDGFGMSKYQNRRTMN----SSDRALLNAIRE 113
VG NPLL+G L + IG G G G S+ +RTMN + DR +L+A +
Sbjct: 100 VGAASNPLLDGINEQLESRIGYRDG-----GSGASR-DLQRTMNRATGTRDRNMLDAFED 153
Query: 114 INSMADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEI 173
I D I+L +T+ D A +++V + K L+G+ DAI +A +Y+AC+ VPRTF EI
Sbjct: 154 IQRKCDSIHLPRTVSDVAKQAYRRVEEEKILRGKKPDAIIAAAIYVACKMNHVPRTFPEI 213
Query: 174 CAVSKISKKEIGRCFKLILKAL----------------------ETSVDLITTG--DFMS 209
C+++ +SKK IG+CFK + +A T + + TG D +
Sbjct: 214 CSLTSVSKKHIGQCFKEMQQAFGLNATGTGSVDGSRASANNSGTSTPIGIGPTGAADLVG 273
Query: 210 RFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGD 269
R+C++L L V ++ I + EL ++ GRSPI++AAA IY ++ + K I
Sbjct: 274 RYCNHLGLEMRVTRSTEDITARVRELGVLAGRSPITIAAACIYFSTLLWGVDKGAKRISQ 333
Query: 270 IAGVAEVTIRQSYKLMYPHASKLFPQDFVFHTPIHELPQL 309
AGV++VTI+ S+K + H + + + P ++ +L
Sbjct: 334 AAGVSDVTIKNSFKELLKHKDTIATPELLAKHPQMDISRL 373
>gi|302692026|ref|XP_003035692.1| hypothetical protein SCHCODRAFT_50631 [Schizophyllum commune H4-8]
gi|300109388|gb|EFJ00790.1| hypothetical protein SCHCODRAFT_50631 [Schizophyllum commune H4-8]
Length = 331
Score = 197 bits (502), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 110/286 (38%), Positives = 159/286 (55%), Gaps = 6/286 (2%)
Query: 18 EDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLSTMI 77
E++ +GD +C CGLV+GDR+ID SEWRTF+N++ G DPSRVG +PLL G + +
Sbjct: 32 EEFGSGDLVCGACGLVLGDRIIDTRSEWRTFANDE-GDDPSRVGAATDPLLEGIEQLDTV 90
Query: 78 GPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADRINLTKTIVDRANNLFKQ 137
R S + + R + S+R +L A R+I++ D+ L KTI D A L+K+
Sbjct: 91 ISFRDGGSGVARELQRAATRAQGSRSERNILTAFRDISTRCDQFALPKTISDIAKQLYKR 150
Query: 138 VHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGRCFKLILKALET 197
VHD LKG+ +AI +AC++IACRQ VPRTF+E C ++ +SKK +G C + I
Sbjct: 151 VHDEGVLKGKPQEAITAACIFIACRQAHVPRTFREFCDLTHVSKKLLGFCCRTISLTFNL 210
Query: 198 SVDLITT-----GDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIY 252
+ T + + R+ + L LP VQ I +A I GRSP+S+A AIY
Sbjct: 211 APGASTNPSAGPENILPRYFNQLDLPTYVQSICHDIIVEARNHGIADGRSPVSIAGGAIY 270
Query: 253 MASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKLFPQDFV 298
+S +EI A V+E TI+ YKL Y KL + ++
Sbjct: 271 FTCHLLGKPKSLREISSAASVSEGTIKLVYKLYYDAKEKLVKEKWI 316
>gi|320168443|gb|EFW45342.1| transcription initiation factor IIB [Capsaspora owczarzaki ATCC
30864]
Length = 342
Score = 197 bits (500), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 117/309 (37%), Positives = 175/309 (56%), Gaps = 20/309 (6%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGV--DPSRVGGPENPLLNGSDL 73
++E ++ GD +C+ CG VVGDR+ID SEWRTF+N+K DPSR+G NPLLNGSDL
Sbjct: 35 ILESHQTGDYVCTACGTVVGDRLIDFNSEWRTFANDKGEEHGDPSRIGSAVNPLLNGSDL 94
Query: 74 STMIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADRINLTKTIVDRANN 133
+T + G + + +S+ + T N DR L A R I +R++L I +A
Sbjct: 95 TTTMAQG---FNAESKAISRAHAKTTANQIDRQLQKAFRLIGDFGERMHLPSNITLKAKQ 151
Query: 134 LFKQV--HDGKNLKGRSNDAIA-----------SACLYIACRQEGVPRTFKEICAVSKIS 180
+FKQ+ H + G ++ A +A L++ACR E V RT+KEI AVS +
Sbjct: 152 IFKQMEEHYTRERNGAASQFGAIVGGKGAKAVAAASLFLACRLEKVSRTYKEITAVSHVR 211
Query: 181 KKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVE-LDIVP 239
++EI R I + L ++ +++ R +LSLP V AT IA++A E L +
Sbjct: 212 EQEISRASSEIKRILGIHSTVVDVSEYVPRLGDHLSLPLNVTMLATQIAQRANEGLHALA 271
Query: 240 GRSPISVAAAAIYMASQASSD-KRSQKEIGDIAGVAEVTIRQSYKLMYPHASKLFPQDFV 298
G+SP+S+ A+IYMASQA++D KR+ +EI G T+ + YK +Y + +FP+
Sbjct: 272 GKSPVSIIGASIYMASQATTDHKRTLEEIARHVGSTVPTLSKWYKELYSNRETIFPEKNE 331
Query: 299 FHTPIHELP 307
F +H LP
Sbjct: 332 FRANLHLLP 340
>gi|255721725|ref|XP_002545797.1| transcription initiation factor IIB [Candida tropicalis MYA-3404]
gi|240136286|gb|EER35839.1| transcription initiation factor IIB [Candida tropicalis MYA-3404]
Length = 347
Score = 196 bits (499), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 118/324 (36%), Positives = 184/324 (56%), Gaps = 28/324 (8%)
Query: 1 MNINKVC--CYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNE-KSGVDP 57
+N+ C C P LIE + GD IC +CGLV+ DR++D SEWRTF N+ K+ DP
Sbjct: 17 LNVTLTCPDCKLFP-PDLIERFSEGDIICGQCGLVLSDRIVDTRSEWRTFQNDDKNSDDP 75
Query: 58 SRVGGPENPLLNGSDLSTMI----GPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIRE 113
SRVG N L + DL+TMI PG G S + ++K Q + ++ + AL A +
Sbjct: 76 SRVGEASNSLYDTEDLTTMISYTANPG-GSGSKNN--LNKIQQKSLVDKKNYALQAAYQR 132
Query: 114 INSMADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEI 173
I+ + + L K++ D A +L+K V D + LKG+S DAI ++ + + CR+ VPRT +EI
Sbjct: 133 ISELCNGYQLPKSVSDAAKHLYKAVRDDRLLKGKSQDAIMASTILLGCRRAEVPRTLEEI 192
Query: 174 CAVSKISKKEIGRCFKLILKALE----------------TSVDLITTGDFMSRFCSNLSL 217
A++ + K+I + +LI K + T++ + D + RFCS+L L
Sbjct: 193 RALTNVPTKQIAKITRLIKKIIHSHLNSDDAAAAIVDETTNLTTHSAEDLIRRFCSHLGL 252
Query: 218 PNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSD-KRSQKEIGDIAGVAEV 276
++ + +IARK EL I+ GRSP ++AA +IY+A++ D K +Q++I D GV+
Sbjct: 253 NPIITNGSEYIARKCNELGILAGRSPTTIAATSIYLAAKVLGDTKLTQQQIRDKTGVSIG 312
Query: 277 TIRQSYKLMYPHASKLFPQDFVFH 300
TI+ SYK++Y A +L + H
Sbjct: 313 TIKNSYKILYEKARELVDPSWEEH 336
>gi|50307385|ref|XP_453671.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|464871|sp|Q05959.1|TF2B_KLULA RecName: Full=Transcription initiation factor IIB; AltName:
Full=General transcription factor TFIIB
gi|173289|gb|AAA35258.1| human TFIIB homologue protein [Kluyveromyces lactis]
gi|49642805|emb|CAH00767.1| KLLA0D13640p [Kluyveromyces lactis]
Length = 357
Score = 196 bits (499), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 116/313 (37%), Positives = 178/313 (56%), Gaps = 19/313 (6%)
Query: 1 MNINKVC--CYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNE-KSGVDP 57
+NI C C +P ++E + GD +C+ CGLV+ DR++D SEWRTFSN+ ++G DP
Sbjct: 22 LNIVISCPECKVYP-PKVVERFSEGDIVCALCGLVLSDRIVDTRSEWRTFSNDDQNGDDP 80
Query: 58 SRVGGPENPLLNGSDLSTMIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSM 117
SRVG NPLL+G+ L+T IG +G + +++ Q++ ++ D L A +I M
Sbjct: 81 SRVGEASNPLLDGNHLTTRIGQAQGSDARVTRDLNRAQSKSIVDKKDNELQAAYAKITMM 140
Query: 118 ADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVS 177
D L K + D A +K + + LKG+S ++I ++ + + CR+ V R+FKEI +++
Sbjct: 141 CDAAELPKIVKDCAKEAYKLCFEERVLKGKSQESIMASVILVGCRRAEVGRSFKEILSLT 200
Query: 178 KISKKEIGRCFKLILKALETSVDL---------ITTGD-----FMSRFCSNLSLPNMVQK 223
+ KKEIG+ F +I L D ITTG F+ RFCS+L L V
Sbjct: 201 NVRKKEIGKTFTIIKNILREKNDRGFANIDTSNITTGQTSAETFIPRFCSHLGLSVQVAN 260
Query: 224 AATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
AA +IA+ + +++++ GRSPI++AAAAIYMA+ S I V E T++ YK
Sbjct: 261 AAEYIAKHSKDVNVLAGRSPITIAAAAIYMATLLFKLNISPTRISQTLQVTEGTVKGGYK 320
Query: 284 LMYPHASKLF-PQ 295
+Y H K+ PQ
Sbjct: 321 ALYEHKEKVVDPQ 333
>gi|428169704|gb|EKX38635.1| hypothetical protein GUITHDRAFT_115183 [Guillardia theta CCMP2712]
Length = 449
Score = 196 bits (499), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 118/309 (38%), Positives = 173/309 (55%), Gaps = 19/309 (6%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLST 75
LIE G +CS C + R++ SEWRTF ++ + R GGPEN LLN T
Sbjct: 139 LIEIQEEGSIVCSNCAMENNARIMSTQSEWRTFQDDDKSQEKGRTGGPENALLNNDGAQT 198
Query: 76 MIGPG----RGDASFDGFG----MSKYQNRRTMNSSDRALLNAIREINSMADRINLTKTI 127
I R + D G ++K Q+R S DRAL +A ++I+ + D +NL+ I
Sbjct: 199 KIEGNDFLTRKPVTVDVLGSAANLAKSQHRFGSQSGDRALTDAYKKIDEICDTMNLSSVI 258
Query: 128 VDRANNLFKQVHDGKNLKGRSN---DAIASACLYIACRQEGVPRTFKEICAVSKISKKEI 184
+A + FK +D ++ K + D + ++C+YIACR+EG PRT KE+CA + ++KKEI
Sbjct: 259 RGQAKHNFKS-YDEESKKQKKKIPIDPVLTSCIYIACREEGFPRTMKEMCAATTLTKKEI 317
Query: 185 GRCFKLILKALETSVDLITTGDFMSRFCSNLSLP-NMVQKAATHIARKAVELDIVPGRSP 243
G FK L ++ +V + D + RFCSNL+L N++++AA HI + A L+I GR
Sbjct: 318 GNAFKHEL--IKKTVQPMKASDIIPRFCSNLNLDGNVIEEAAKHICQAADALNITEGRVY 375
Query: 244 ISVAAAAIYMA----SQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKLFPQDFVF 299
S+A+AA++MA + RS K+I D G AE TIRQ YK M+ +L P DF
Sbjct: 376 TSIASAAMFMACLLRQRNPKHFRSCKQISDATGAAEATIRQIYKEMHAKRHQLVPPDFAT 435
Query: 300 HTPIHELPQ 308
I +LP+
Sbjct: 436 KEEIDKLPE 444
>gi|302307436|ref|NP_984103.2| ADR007Cp [Ashbya gossypii ATCC 10895]
gi|299789000|gb|AAS51927.2| ADR007Cp [Ashbya gossypii ATCC 10895]
gi|374107319|gb|AEY96227.1| FADR007Cp [Ashbya gossypii FDAG1]
Length = 354
Score = 196 bits (497), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 113/315 (35%), Positives = 180/315 (57%), Gaps = 18/315 (5%)
Query: 1 MNINKVC--CYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNE-KSGVDP 57
+NI C C +P ++E + GD +C+ CGLV+ DR++D SEWRTFSN+ ++G DP
Sbjct: 22 LNIVISCPECKVYP-PKVVERFSEGDIVCALCGLVLSDRIVDTRSEWRTFSNDDQNGDDP 80
Query: 58 SRVGGPENPLLNGSDLSTMIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSM 117
SRVG NPLL+G+ LST IG +G +++ Q++ ++ D L A +I M
Sbjct: 81 SRVGEASNPLLDGNHLSTRIGQVQGSDVKLTRELNRAQSKSIVDKKDNELQAAYAKITMM 140
Query: 118 ADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVS 177
D L + + D A +K + + LKG+S ++I ++ + + CR+ V RTFKEI +++
Sbjct: 141 CDAAELPRIVKDCAKEAYKLCFEERALKGKSQESIMASVILVGCRRAEVGRTFKEILSLT 200
Query: 178 KISKKEIGRCFKLILKALETSVDL---------ITTGD-----FMSRFCSNLSLPNMVQK 223
+ KKEIG+ F +I K L D I+TG F+ RFCS+L L V
Sbjct: 201 NVRKKEIGKTFNIIKKILREKNDSGFANVDTANISTGQTNAETFIPRFCSHLGLSVQVAN 260
Query: 224 AATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
AA +IA+ A +++++ GRSP+++AA+AIYMA+ + +I V E T++ YK
Sbjct: 261 AAEYIAKHAKDINVLAGRSPLTIAASAIYMANLLFRYNITPSQISATLQVTEGTVKGGYK 320
Query: 284 LMYPHASKLFPQDFV 298
++Y H K+ + +
Sbjct: 321 ILYEHKEKVVDPELI 335
>gi|384496466|gb|EIE86957.1| hypothetical protein RO3G_11668 [Rhizopus delemar RA 99-880]
Length = 292
Score = 196 bits (497), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 110/237 (46%), Positives = 160/237 (67%), Gaps = 5/237 (2%)
Query: 1 MNINKVC--CYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPS 58
+NIN +C C P ++E++ +GD +C +CGLV+GDR+ID SEWRTF+N++ G DPS
Sbjct: 27 LNINLMCPDCKITP-PHIVEEFASGDLVCGDCGLVLGDRIIDTRSEWRTFANDE-GDDPS 84
Query: 59 RVGGPENPLLNGSDLSTMIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMA 118
RVG NPLL+G+ L T+I R + ++K R T +R L+ A +EI +M
Sbjct: 85 RVGAAANPLLDGNQLDTVISR-RDGGTGAAKDLNKVHGRATAVKGERNLVQAYKEIGAMC 143
Query: 119 DRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSK 178
D I+L+K + D A L+K+V D K L+G+S+DAI +AC++IACRQE V RTF+EICA+++
Sbjct: 144 DSISLSKIVSDTAKQLYKRVEDEKLLRGKSSDAIIAACIFIACRQEKVGRTFREICALTR 203
Query: 179 ISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVEL 235
+ KKEIGRC K + + L+T+ ++ + D M RFCSNL L N VQKA + R+ +L
Sbjct: 204 VPKKEIGRCCKTLQQKLQTNTTIMNSEDLMLRFCSNLQLANYVQKAGIDLVRRVKDL 260
>gi|363752235|ref|XP_003646334.1| hypothetical protein Ecym_4477 [Eremothecium cymbalariae
DBVPG#7215]
gi|356889969|gb|AET39517.1| hypothetical protein Ecym_4477 [Eremothecium cymbalariae
DBVPG#7215]
Length = 354
Score = 195 bits (495), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 113/315 (35%), Positives = 179/315 (56%), Gaps = 18/315 (5%)
Query: 1 MNINKVC--CYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNE-KSGVDP 57
+NI C C +P ++E + GD +C+ CGLV+ DR++D SEWRTFSN+ ++G DP
Sbjct: 22 LNIVISCPECKVYP-PKVVERFSEGDIVCALCGLVLSDRIVDTRSEWRTFSNDDQNGDDP 80
Query: 58 SRVGGPENPLLNGSDLSTMIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSM 117
SRVG NPLL+G+ LST IG +G +++ Q++ ++ D L + +I M
Sbjct: 81 SRVGEASNPLLDGNHLSTRIGQAQGSDVKLTRELNRAQSKSIVDKKDNELQASYAKITMM 140
Query: 118 ADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVS 177
D L K + D A +K + + LKG+S ++I ++ + + CR+ V R+FKEI +++
Sbjct: 141 CDAAELPKIVKDCAKEAYKLCFEERALKGKSQESIMASVILLGCRRAEVGRSFKEILSLT 200
Query: 178 KISKKEIGRCFKLILKALETSVDL---------ITTGD-----FMSRFCSNLSLPNMVQK 223
+ KKEIG+ +I K L D I+TG F+ RFCS+L L V
Sbjct: 201 NVRKKEIGKTLNIIKKILREKNDRGFVNIDTANISTGQTSAETFIPRFCSHLGLSVQVAN 260
Query: 224 AATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
AA +IA+ A +++++ GRSPI++AA+AIYMA+ + +I V E T++ YK
Sbjct: 261 AAEYIAKHAKDINVLAGRSPITIAASAIYMANLLFKFNITPAQISSTLQVTEGTVKGGYK 320
Query: 284 LMYPHASKLFPQDFV 298
++Y H K+ + V
Sbjct: 321 VLYEHKEKVVDPELV 335
>gi|320589326|gb|EFX01788.1| transcription initiation protein [Grosmannia clavigera kw1407]
Length = 343
Score = 193 bits (490), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 112/313 (35%), Positives = 170/313 (54%), Gaps = 27/313 (8%)
Query: 8 CYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVD-PSRVGGPENP 66
C E+P L+E++ +GD +C CGLVVG R+ID SEWRTF+N+ G D PSRVG N
Sbjct: 25 CKEYP-PNLVEEFSSGDMVCDSCGLVVGPRIIDSRSEWRTFANDDQGNDDPSRVGESANA 83
Query: 67 LLNGSDLSTMIGPGRGDASFDG--FGMSKYQNRRTMNSSDRALLNAIREINSMADRINLT 124
L N L T + + G ++K +NS L R I+++ D +
Sbjct: 84 LANDEGLRTQVDMRAANGRLAGKLNSINKKSQSEKLNSD---LQEGYRAISTLVDMMQTA 140
Query: 125 KTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEI 184
+ A++++K ++ LKG+ +A+ + C++IACRQ GVPRTF+EI A+++++KKEI
Sbjct: 141 PIVNTTASHIYKLAYENGQLKGKPREAVIAGCIFIACRQCGVPRTFREIYAITRVTKKEI 200
Query: 185 GRCFKLILKALE------------------TSVDLITTGDFMSRFCSNLSLPNM--VQKA 224
GR FK + L + + + +R+CS L N V+K
Sbjct: 201 GRVFKSLESFLSKIQERNPQASAAQGVKDYKASSSTSAEELCTRYCSLLGFRNTPRVEKI 260
Query: 225 ATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKL 284
+ +ARK + + GRSP+SVAAA IY ASQ D R+ K+I IAGV++ TI+ +Y+
Sbjct: 261 SKALARKTTSIPDLAGRSPLSVAAACIYFASQYLEDPRASKDIASIAGVSDGTIKTAYRF 320
Query: 285 MYPHASKLFPQDF 297
+Y L D+
Sbjct: 321 LYNARDSLVEPDW 333
>gi|374723591|gb|EHR75671.1| transcription initiation factor TFIIB [uncultured marine group II
euryarchaeote]
Length = 308
Score = 193 bits (490), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 109/288 (37%), Positives = 164/288 (56%), Gaps = 11/288 (3%)
Query: 6 VCCYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPEN 65
V C + L D G+ +C +CGLV+ D VID G+EWR FS E+ G +R G P
Sbjct: 10 VKCGDCGSRSLTRDETRGEVVCEDCGLVLEDNVIDQGAEWRVFSPEQ-GDQRARTGAPMT 68
Query: 66 PLLNGSDLSTMIGPGRGDASFDG---------FGMSKYQNR-RTMNSSDRALLNAIREIN 115
+L+ LST I D S + M K+Q R R N+++R L A+ E++
Sbjct: 69 VMLHDKGLSTDIDWQNKDYSGKTINSRYRSQFYRMRKWQKRSRVSNATERNLAMALAELD 128
Query: 116 SMADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICA 175
MA R+ L K++ + A +K+ D + ++GRS + +A+A LY ACRQ GVPRT EI
Sbjct: 129 RMASRLELPKSVREAAAVNYKKAVDKRLIRGRSIEGVAAASLYAACRQCGVPRTLDEIGQ 188
Query: 176 VSKISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVEL 235
S+ +KEIGR ++ +++ L+ + D++SRFCS L L V+ A + + A E
Sbjct: 189 ASRTGRKEIGRTYRFMVRELKMKIMPTGPEDYISRFCSGLGLDAEVEAKAYELIKAAQEK 248
Query: 236 DIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
++ GR P +AA+ IY+AS +R+Q+E+ ++AGV EVTIR YK
Sbjct: 249 ELTSGRGPTGIAASIIYIASVLCGKRRTQREVAEVAGVTEVTIRNRYK 296
Score = 46.6 bits (109), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 47/95 (49%), Gaps = 4/95 (4%)
Query: 208 MSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEI 267
+ R S L LP V++AA +KAV+ ++ GRS VAAA++Y A + R+ EI
Sbjct: 127 LDRMASRLELPKSVREAAAVNYKKAVDKRLIRGRSIEGVAAASLYAACRQCGVPRTLDEI 186
Query: 268 GDIAGVAEVTIRQSYKLMYPHASKLF----PQDFV 298
G + I ++Y+ M P+D++
Sbjct: 187 GQASRTGRKEIGRTYRFMVRELKMKIMPTGPEDYI 221
>gi|443927143|gb|ELU45667.1| transcription initiation factor IIB [Rhizoctonia solani AG-1 IA]
Length = 354
Score = 192 bits (488), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 111/304 (36%), Positives = 172/304 (56%), Gaps = 27/304 (8%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWR---TFSNEKSGVDPSRVGGPENPLLNG-S 71
++E++ +GD +C +CGLV+GDR++D SE TF+N++ G DPSRVG NPLL G
Sbjct: 41 IVEEFGSGDLVCGDCGLVLGDRIVDTRSECECPHTFANDE-GDDPSRVGAATNPLLEGIE 99
Query: 72 DLSTMIGPGRGDASFDGFGMSKYQNRRTMNSS----DRALLNAIREINSMADRINLTKTI 127
L T+I G G GM++ R S +R ++ A R+I++M + I+L K +
Sbjct: 100 QLDTVISFKDG-----GSGMARELQRAAARGSVGKNERNMMTAFRDISAMCESISLPKNV 154
Query: 128 VDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGRC 187
D A L+K+ + K ++G+S DA+ + C+ IACRQ VPRTFKEI ++++ KK +G+C
Sbjct: 155 SDTAKQLYKRAEEEKIVRGKSADAVVACCILIACRQANVPRTFKEIHQLTRVPKKTLGQC 214
Query: 188 FKLILKALETSVDLITTG-------------DFMSRFCSNLSLPNMVQKAATHIARKAVE 234
FK +A + S G + ++R+C+ L L V A + A
Sbjct: 215 FKAFEQAFDLSRPAPADGQDGAGPASGTSAENLLNRYCNQLHLHASVVTACEEVVVTARN 274
Query: 235 LDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKLFP 294
I GRSPIS+A AAIY S +S K+I +AGV+E TI+ YK+++ KL
Sbjct: 275 HGIADGRSPISIAGAAIYFTSYLLGQGKSAKDICSVAGVSESTIKLVYKILWQEREKLVK 334
Query: 295 QDFV 298
++++
Sbjct: 335 KEWL 338
>gi|291333316|gb|ADD93023.1| transcription initiation factor IIB [uncultured archaeon
MedDCM-OCT-S04-C246]
Length = 308
Score = 192 bits (487), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 109/290 (37%), Positives = 164/290 (56%), Gaps = 11/290 (3%)
Query: 4 NKVCCYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGP 63
+ V C E L++D G+ IC +CGLV+ D VID G+EWR FS E+ G +R G P
Sbjct: 8 DTVKCTECASRNLVKDENRGELICQDCGLVLEDNVIDQGAEWRVFSPEQ-GDQRARTGAP 66
Query: 64 ENPLLNGSDLSTMIGPGRGDASFDG---------FGMSKYQNR-RTMNSSDRALLNAIRE 113
+L+ LST I D S + M K+Q R R N+++R L A+ E
Sbjct: 67 MTVMLHDKGLSTDIDWQNKDYSGKSISSRYRSQFYRMRKWQKRSRVSNATERNLAMALAE 126
Query: 114 INSMADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEI 173
++ MA R++L K+I + A +K+ + + ++GRS + +A+A LY ACRQ PRT EI
Sbjct: 127 LDRMASRLDLPKSIREAAAVNYKKAVEARLIRGRSIEGVAAASLYAACRQCSNPRTLDEI 186
Query: 174 CAVSKISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAV 233
S+ +KEIGR ++ +++ L+ + D++ RFCS L L VQ A + A
Sbjct: 187 GEASRTGRKEIGRTYRFMVRELKMKIPPTKPEDYIPRFCSGLDLDAEVQAKAYELIAAAQ 246
Query: 234 ELDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
E ++ GR P +AA+ IY+AS +R+Q+E+ ++AGV EVTIR YK
Sbjct: 247 ERELTSGRGPTGIAASIIYIASVLCGKRRTQREVAEVAGVTEVTIRNRYK 296
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 50/95 (52%), Gaps = 4/95 (4%)
Query: 208 MSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEI 267
+ R S L LP +++AA +KAVE ++ GRS VAAA++Y A + S+ R+ EI
Sbjct: 127 LDRMASRLDLPKSIREAAAVNYKKAVEARLIRGRSIEGVAAASLYAACRQCSNPRTLDEI 186
Query: 268 GDIAGVAEVTIRQSYKLMYPHASKLF----PQDFV 298
G+ + I ++Y+ M P+D++
Sbjct: 187 GEASRTGRKEIGRTYRFMVRELKMKIPPTKPEDYI 221
>gi|156844090|ref|XP_001645109.1| hypothetical protein Kpol_538p11 [Vanderwaltozyma polyspora DSM
70294]
gi|156115766|gb|EDO17251.1| hypothetical protein Kpol_538p11 [Vanderwaltozyma polyspora DSM
70294]
Length = 357
Score = 191 bits (486), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 114/326 (34%), Positives = 179/326 (54%), Gaps = 20/326 (6%)
Query: 1 MNINKVC--CYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNE-KSGVDP 57
+NI C C +P ++E + GD +C+ CGLV+ D+++D SEWRTFSN+ ++G DP
Sbjct: 20 LNIVLTCPECKVYP-PKVVERFSEGDVVCALCGLVLSDKLVDTRSEWRTFSNDDQNGDDP 78
Query: 58 SRVGGPENPLLNGSDLSTMIGPGRG-DASFDGFGMSKYQNRRTMNSSDRALLNAIREINS 116
SRVG NPLL+G++LST IG G D F +++ Q + ++ D + A +I
Sbjct: 79 SRVGEASNPLLDGNNLSTRIGQGESTDVRFTK-ELNRAQGKNVVDKKDNEVQAAFAKITM 137
Query: 117 MADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAV 176
+ D L K + D A +K HD K+L+G+S+++I +A + I CR+ V RTFKEI ++
Sbjct: 138 LCDAAELPKIVKDCAKEAYKLCHDEKSLRGKSSESIMAASILIGCRRASVARTFKEIQSI 197
Query: 177 SKISKKEIGRCFKLILKAL-ETSVDLITTGD-----------FMSRFCSNLSLPNMVQKA 224
+ KE G+ ++ L E S D D ++ RFCS+L LP V +
Sbjct: 198 IHVKTKEFGKTLAIMKGILREKSADGFIKIDTDNMSGAQNLTYIPRFCSHLGLPMQVTTS 257
Query: 225 ATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKL 284
A + A K E++ + G+SPI++A +IYM S +G I V E TI+ YK+
Sbjct: 258 AEYTAAKCKEIEEIAGKSPITIAVVSIYMNILLFKIPISAARVGQILQVTEGTIKSGYKI 317
Query: 285 MYPHASKLFPQDFVFH--TPIHELPQ 308
+Y H +KL + + + +LP+
Sbjct: 318 LYEHRAKLIDPQLIANGIVTLEDLPK 343
>gi|336373760|gb|EGO02098.1| hypothetical protein SERLA73DRAFT_177837 [Serpula lacrymans var.
lacrymans S7.3]
gi|336386576|gb|EGO27722.1| hypothetical protein SERLADRAFT_461642 [Serpula lacrymans var.
lacrymans S7.9]
Length = 347
Score = 191 bits (486), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 111/297 (37%), Positives = 174/297 (58%), Gaps = 13/297 (4%)
Query: 12 PDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGS 71
P+ ++E++ +GD +C CGLV+GDR++D SEWRTF+N++ G DPSRVG + L
Sbjct: 37 PNPNIVEEFGSGDLVCGSCGLVLGDRIVDTRSEWRTFANDE-GDDPSRVGAASD-LEGIE 94
Query: 72 DLSTMIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADRINLTKTIVDRA 131
L T I R S + + +R + S+R LL A R+I S D+ +L KTI D A
Sbjct: 95 QLDTAIS-FRDGGSGIARELQRAASRSQSSRSERNLLAAFRDIGSWCDQFSLPKTISDIA 153
Query: 132 NNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGRCFKLI 191
L+K+ + K L+G+ +A+ +AC++IACRQ VPRTF+EIC ++ +SKK +G+C+K +
Sbjct: 154 KQLYKRSDEEKLLRGKPLEAVIAACIFIACRQAHVPRTFREICNLTHVSKKTLGQCYKAL 213
Query: 192 LKAL--------ETSVDLITTG--DFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGR 241
+A S ++G + + R+C++L LP VQ I +A + I GR
Sbjct: 214 EQAFNLAPGASAHQSATAPSSGPENLLVRYCNHLDLPPNVQSICGDIIVEARKHGIADGR 273
Query: 242 SPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKLFPQDFV 298
SP+S+A AIY +S ++I +AGV+E TI+ Y+L Y KL ++++
Sbjct: 274 SPVSIAGGAIYFTCLLLGKPKSARDISAVAGVSEGTIKLVYRLYYLDKEKLVKEEWI 330
>gi|242088689|ref|XP_002440177.1| hypothetical protein SORBIDRAFT_09g027310 [Sorghum bicolor]
gi|241945462|gb|EES18607.1| hypothetical protein SORBIDRAFT_09g027310 [Sorghum bicolor]
Length = 311
Score = 191 bits (484), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 112/301 (37%), Positives = 169/301 (56%), Gaps = 20/301 (6%)
Query: 11 HPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGV--DPSRVGGPENPLL 68
H ++ D+ GD IC+EC LV+ ID GSEWR F+++ G DPSRVGGP +P L
Sbjct: 12 HRTTEVVLDHATGDTICTECALVLEAHYIDEGSEWRNFADDGGGEDRDPSRVGGPSDPFL 71
Query: 69 NGSDLSTMI---GPGRGDASFDGFGMSKYQNRRTMNSSD--RALLNAIREINSMADRINL 123
+ + L T I GP + G + + + +D +AL++A I MADR+ L
Sbjct: 72 SNTPLVTRIAYAGPQKTQGE-GGHALPRMRVSAGAGGADHEQALVDAFHAIADMADRLGL 130
Query: 124 TKTIVDRANNLFKQVHDGKN--LKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKI-- 179
TI DRA +++K++ + K +G+ D +ACLY+ACR EG PRT+KE+ V+
Sbjct: 131 VGTIRDRAKDVYKRLDEAKACPTRGKKRDVFYAACLYVACRNEGKPRTYKELATVTAAGA 190
Query: 180 -SKKEIGRCFKLILKALETS------VDLITTGDFMSRFCSNLSLPNMVQKAATHIARKA 232
+KKEIG+ LI K L + ++ D+M RFCS L + N +AA AR+
Sbjct: 191 SAKKEIGKMTTLIKKVLGEEAGQVMDIGVVRAADYMRRFCSRLGMGNQEMRAAQEAARR- 249
Query: 233 VELDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKL 292
+E + R+P S+AAA YM Q + ++ +++ GVAE TI++++K + PHA L
Sbjct: 250 LENGLDVRRNPESIAAAISYMVVQRAGAGKTVRDVSMATGVAEATIKEAHKDLTPHAEML 309
Query: 293 F 293
F
Sbjct: 310 F 310
>gi|366998229|ref|XP_003683851.1| hypothetical protein TPHA_0A03400 [Tetrapisispora phaffii CBS 4417]
gi|357522146|emb|CCE61417.1| hypothetical protein TPHA_0A03400 [Tetrapisispora phaffii CBS 4417]
Length = 352
Score = 191 bits (484), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 115/325 (35%), Positives = 178/325 (54%), Gaps = 18/325 (5%)
Query: 1 MNINKVC--CYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNE-KSGVDP 57
+NI C C +P ++E + GD +C+ CGLV+ D+++D SEWRTFSN+ ++G DP
Sbjct: 18 LNIVLTCPECKVYP-PKVVERFSEGDVVCALCGLVLSDKLVDTRSEWRTFSNDDQNGDDP 76
Query: 58 SRVGGPENPLLNGSDLSTMIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSM 117
SRVG NPLL+G++LST IG G +++ Q + M+ D + A +I +
Sbjct: 77 SRVGEAANPLLDGNNLSTRIGQGESTDMRFTKELNRAQGKNVMDKKDHEVQAAFAKITML 136
Query: 118 ADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVS 177
D L K + D A +K HD K+L+G+S++++ +A + I CR+ V RTFKEI ++
Sbjct: 137 CDAAELPKIVKDCAKEAYKLCHDEKSLRGKSSESVMAASILIGCRRASVARTFKEIQSII 196
Query: 178 KISKKEIGRCFKLILKAL-ETSVDLITTGD-----------FMSRFCSNLSLPNMVQKAA 225
+ KE G+ ++ L E S D D ++ RFCS+L LP V +A
Sbjct: 197 HVKTKEFGKTLAIMKGILREKSADGFIKIDTDNMSGAQNLTYIPRFCSHLGLPMQVTTSA 256
Query: 226 THIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLM 285
+ A K E++ + G+SPI++A +IY+ + +G I V E TI+ YK++
Sbjct: 257 EYTAAKCKEIEEIAGKSPITIAVVSIYLNILLFKIPITAARVGQILQVTEGTIKSGYKIL 316
Query: 286 YPHASKLF-PQDFVFHTPIHE-LPQ 308
Y H +KL PQ T I E LP+
Sbjct: 317 YEHRAKLVDPQLIANGTVILEDLPK 341
>gi|325960055|ref|YP_004291521.1| transcription initiation factor iiB [Methanobacterium sp. AL-21]
gi|325331487|gb|ADZ10549.1| Transcription initiation factor IIB [Methanobacterium sp. AL-21]
Length = 331
Score = 190 bits (483), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 103/288 (35%), Positives = 166/288 (57%), Gaps = 15/288 (5%)
Query: 8 CYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPL 67
C E LI D+ G+ +C CGLV+ D ++D+G EWR F +E+ +RVG P
Sbjct: 35 CPECGSEKLINDHERGEVVCGACGLVIDDNIVDMGPEWRAFDHEQRD-KRTRVGAPITYT 93
Query: 68 LNGSDLSTMIG-----------PGRGDASFDGFGMSKYQNR-RTMNSSDRALLNAIREIN 115
++ LSTMI P R A + + + K+Q + R +++R L A+ E++
Sbjct: 94 IHDKGLSTMIDWRNKDIYGRDIPARNRAQW--YRLRKWQRKIRISGATERNLAFALSELD 151
Query: 116 SMADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICA 175
+ R+ L +++ + A+ +++ + K ++GRS + + +A LY ACR+ VPRT EI
Sbjct: 152 RDSSRLGLPRSVREAASVVYRNAVENKLIRGRSIEGVVAASLYAACRRCNVPRTLDEIAE 211
Query: 176 VSKISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVEL 235
VS++SKKE+GR ++ + + L + + D++ RF S L+L VQ A I KA+E
Sbjct: 212 VSRVSKKEVGRTYRFLTRELNIKLPPTSPVDYVPRFASELNLSGEVQSKAIEIIEKAMEK 271
Query: 236 DIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
+ GR P VAAAA+Y+AS ++++Q+++ DIAGV EVTIR YK
Sbjct: 272 GLTSGRGPTGVAAAALYIASVLLGERKTQRDVADIAGVTEVTIRNRYK 319
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 54/96 (56%), Gaps = 1/96 (1%)
Query: 208 MSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEI 267
+ R S L LP V++AA+ + R AVE ++ GRS V AA++Y A + + R+ EI
Sbjct: 150 LDRDSSRLGLPRSVREAASVVYRNAVENKLIRGRSIEGVVAASLYAACRRCNVPRTLDEI 209
Query: 268 GDIAGVAEVTIRQSYKLMYPHAS-KLFPQDFVFHTP 302
+++ V++ + ++Y+ + + KL P V + P
Sbjct: 210 AEVSRVSKKEVGRTYRFLTRELNIKLPPTSPVDYVP 245
>gi|410720379|ref|ZP_11359735.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Methanobacterium sp. Maddingley
MBC34]
gi|410601161|gb|EKQ55681.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Methanobacterium sp. Maddingley
MBC34]
Length = 340
Score = 190 bits (482), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 103/288 (35%), Positives = 166/288 (57%), Gaps = 15/288 (5%)
Query: 8 CYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPL 67
C E LI D+ G+ +C CGLV+ D ++D+G EWR F +E+ +RVG P
Sbjct: 44 CPECQSEKLINDHERGEIVCGSCGLVIDDNLVDMGPEWRAFDHEQRD-KRTRVGAPITYT 102
Query: 68 LNGSDLSTMIG-----------PGRGDASFDGFGMSKYQNR-RTMNSSDRALLNAIREIN 115
++ LSTMI P R A + + + K+Q + R +++R L A+ E++
Sbjct: 103 IHDKGLSTMIDWRNKDIYGRDIPARNRAQW--YRLRKWQRKIRISGATERNLAFALSELD 160
Query: 116 SMADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICA 175
+ R+ L +++ + A+ +++ + K ++GRS + + +A LY ACR+ VPRT EI
Sbjct: 161 RDSSRLGLPRSVREAASVVYRNAVENKLIRGRSIEGVVAASLYAACRRCNVPRTLDEIAE 220
Query: 176 VSKISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVEL 235
VS++SKKE+GR ++ + + L + + D++ RF S L+L VQ A I KA+E
Sbjct: 221 VSRVSKKEVGRTYRFLTRELNIKLPPTSPVDYVPRFASELNLSGEVQSKAIEIIEKAMEK 280
Query: 236 DIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
+ GR P VAAAA+Y+AS ++++Q+++ DIAGV EVTIR YK
Sbjct: 281 GLTSGRGPTGVAAAALYIASVLLGERKTQRDVADIAGVTEVTIRNRYK 328
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 54/96 (56%), Gaps = 1/96 (1%)
Query: 208 MSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEI 267
+ R S L LP V++AA+ + R AVE ++ GRS V AA++Y A + + R+ EI
Sbjct: 159 LDRDSSRLGLPRSVREAASVVYRNAVENKLIRGRSIEGVVAASLYAACRRCNVPRTLDEI 218
Query: 268 GDIAGVAEVTIRQSYKLMYPHAS-KLFPQDFVFHTP 302
+++ V++ + ++Y+ + + KL P V + P
Sbjct: 219 AEVSRVSKKEVGRTYRFLTRELNIKLPPTSPVDYVP 254
>gi|440797904|gb|ELR18978.1| transcription factor tfiib repeat domain containing protein
[Acanthamoeba castellanii str. Neff]
Length = 303
Score = 190 bits (482), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 108/295 (36%), Positives = 172/295 (58%), Gaps = 12/295 (4%)
Query: 10 EHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLN 69
++P+ +ED+ GD IC +CGLVVGDR++DV SEWR F++ SG DPSR + L +
Sbjct: 6 KNPNGEFMEDFANGDMICRDCGLVVGDRIVDVRSEWRNFAD--SGDDPSRASRVNDWLPS 63
Query: 70 GSDLSTMIGP------GRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADRINL 123
G L+T I G+ + G MS++Q R ++ D+ LL+ +I +A+ + L
Sbjct: 64 GG-LATEIAKLPTGPNGQNNGQGGGGKMSQWQRRIQLSQGDQNLLSGFDKITHIAEILVL 122
Query: 124 TKTIVDRANNLFKQVHDGKNLKGR-SNDAIASACLYIACRQEGVPRTFKEICAVSKISKK 182
+ I ++A L+ +N R D+I +A +Y+AC++EGVPRTFKEI ++IS+K
Sbjct: 123 PQKIKNKAKELYSSFESKRNKSMRCKKDSIVAAIIYMACKEEGVPRTFKEISKETEISEK 182
Query: 183 EIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRS 242
EI + ++ + K L + D ++RFCS L L N + AT IA KA + G+S
Sbjct: 183 EIRKYYRALNKILPKGTGRTSASDLVNRFCSKLKLSNEIMNLATDIANKAAAF--LEGKS 240
Query: 243 PISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKLFPQDF 297
P S+AAA+I +A++ +KR +K+I A ++ TIR +K + PH + P+ +
Sbjct: 241 PSSIAAASILLATKLQGEKRWEKDIAAAASISPTTIRNVFKELLPHQESILPEGY 295
>gi|366996677|ref|XP_003678101.1| hypothetical protein NCAS_0I00880 [Naumovozyma castellii CBS 4309]
gi|342303972|emb|CCC71756.1| hypothetical protein NCAS_0I00880 [Naumovozyma castellii CBS 4309]
Length = 370
Score = 189 bits (481), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 110/303 (36%), Positives = 171/303 (56%), Gaps = 16/303 (5%)
Query: 1 MNINKVC--CYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNE-KSGVDP 57
+NI C C +P ++E + GD +C+ CGLV+ DR++D SEWRTFSN+ ++G DP
Sbjct: 33 LNIVLTCPECKVYP-PKIVERFSEGDVVCALCGLVLSDRLVDTRSEWRTFSNDDQNGDDP 91
Query: 58 SRVGGPENPLLNGSDLSTMIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSM 117
SRVG NPLL+G++LST IG G G +++ Q + ++ D + A +I +
Sbjct: 92 SRVGEASNPLLDGNNLSTRIGQGEGTDMRFTKELNRAQGKNVVDKKDNEVQAAFAKITML 151
Query: 118 ADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVS 177
D L K + D A +K HD ++LKG+S ++I +A + I CR+ V RTFKEI ++
Sbjct: 152 CDAAELPKIVKDCAKEAYKLCHDERSLKGKSTESIMAASILIGCRRAEVARTFKEIQSII 211
Query: 178 KISKKEIGRCFKLILKAL-ETSVD---LITTGD--------FMSRFCSNLSLPNMVQKAA 225
+ KE G+ ++ L E S D I T + ++ RFCS+L LP V AA
Sbjct: 212 HVKTKEFGKTLGIMKGILREKSSDGFIKINTDNMSGAQNLTYIPRFCSHLGLPMQVTTAA 271
Query: 226 THIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLM 285
+ A+K E++ + G+SPI++A +IY+ + ++G I V E TI+ YK++
Sbjct: 272 EYTAKKCKEIEEIAGKSPITIAVVSIYLNILLFKIPVTAAKVGQILQVTEGTIKSGYKIL 331
Query: 286 YPH 288
Y H
Sbjct: 332 YEH 334
>gi|408382816|ref|ZP_11180358.1| transcription initiation factor IIB [Methanobacterium formicicum
DSM 3637]
gi|407814618|gb|EKF85243.1| transcription initiation factor IIB [Methanobacterium formicicum
DSM 3637]
Length = 307
Score = 189 bits (480), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 103/288 (35%), Positives = 166/288 (57%), Gaps = 15/288 (5%)
Query: 8 CYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPL 67
C E LI D+ G+ +C CGLV+ D ++D+G EWR F +E+ +RVG P
Sbjct: 11 CPECGSEKLINDHERGEIVCGACGLVIDDNLVDMGPEWRAFDHEQRD-KRTRVGAPITYT 69
Query: 68 LNGSDLSTMIG-----------PGRGDASFDGFGMSKYQNR-RTMNSSDRALLNAIREIN 115
++ LSTMI P R A + + + K+Q + R +++R L A+ E++
Sbjct: 70 IHDKGLSTMIDWRNKDIYGRDIPARNRAQW--YRLRKWQRKIRISGATERNLAFALSELD 127
Query: 116 SMADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICA 175
+ R+ L +++ + A+ +++ + K ++GRS + + +A LY ACR+ VPRT EI
Sbjct: 128 RDSSRLGLPRSVREAASVVYRNAVENKLIRGRSIEGVVAASLYAACRRCNVPRTLDEIAE 187
Query: 176 VSKISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVEL 235
VS++SKKE+GR ++ + + L + + D++ RF S L+L VQ A I KA+E
Sbjct: 188 VSRVSKKEVGRTYRFLTRELNIKLPPTSPVDYVPRFASELNLSGEVQSKAIEIIEKAMEK 247
Query: 236 DIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
+ GR P VAAAA+Y+AS ++++Q+++ DIAGV EVTIR YK
Sbjct: 248 GLTSGRGPTGVAAAALYIASVLLGERKTQRDVADIAGVTEVTIRNRYK 295
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 54/96 (56%), Gaps = 1/96 (1%)
Query: 208 MSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEI 267
+ R S L LP V++AA+ + R AVE ++ GRS V AA++Y A + + R+ EI
Sbjct: 126 LDRDSSRLGLPRSVREAASVVYRNAVENKLIRGRSIEGVVAASLYAACRRCNVPRTLDEI 185
Query: 268 GDIAGVAEVTIRQSYKLMYPHAS-KLFPQDFVFHTP 302
+++ V++ + ++Y+ + + KL P V + P
Sbjct: 186 AEVSRVSKKEVGRTYRFLTRELNIKLPPTSPVDYVP 221
>gi|282165287|ref|YP_003357672.1| transcription initiation factor IIB [Methanocella paludicola SANAE]
gi|282157601|dbj|BAI62689.1| transcription initiation factor IIB [Methanocella paludicola SANAE]
Length = 336
Score = 189 bits (480), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 111/288 (38%), Positives = 168/288 (58%), Gaps = 11/288 (3%)
Query: 6 VCCYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPEN 65
V C E L+ DY + +C+ECGLVV + ID+G EWR F +++ + SRVG P
Sbjct: 38 VECPECGSRQLVHDYERAELVCNECGLVVDEDFIDMGPEWRAFDHDQR-MKRSRVGAPMT 96
Query: 66 PLLNGSDLSTMIGPGRGDASFDG---------FGMSKYQNR-RTMNSSDRALLNAIREIN 115
++ LSTMI D+ + + K+Q R R N+++R L A+ E++
Sbjct: 97 FTIHDKGLSTMIDWRNRDSYGKSISSKNRAQLYRLRKWQRRIRVSNATERNLAFALSELD 156
Query: 116 SMADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICA 175
MA + L + I + + ++++ ++GRS + +A+A LY ACRQ GVPRT EI
Sbjct: 157 RMASALGLPRNIRETSAVVYRKAVTKNLIRGRSIEGVAAAALYAACRQNGVPRTLDEIAE 216
Query: 176 VSKISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVEL 235
VS++S+KEIGR ++ I + L + + D++ RFCS LSL VQ A I R+A E
Sbjct: 217 VSRVSRKEIGRTYRFISRELGLKLMPTSPIDYVPRFCSGLSLKGEVQSRAVEILRQAAEK 276
Query: 236 DIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
++ GR P VAAAAIY++S ++R+Q+E+ ++AGV EVTIR YK
Sbjct: 277 ELTSGRGPTGVAAAAIYISSILCGERRTQREVANVAGVTEVTIRNRYK 324
>gi|147919688|ref|YP_686567.1| transcription initiation factor IIB [Methanocella arvoryzae MRE50]
gi|110621963|emb|CAJ37241.1| transcription initiation factor IIB [Methanocella arvoryzae MRE50]
Length = 337
Score = 189 bits (480), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 110/286 (38%), Positives = 167/286 (58%), Gaps = 11/286 (3%)
Query: 8 CYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPL 67
C E L+ DY + +C+ECGLVV + ID+G EWR F +++ + SRVG P
Sbjct: 41 CPECGSRQLVHDYERAELVCNECGLVVDEDFIDMGPEWRAFDHDQR-MKRSRVGAPMTFT 99
Query: 68 LNGSDLSTMIGPGRGDASFDG---------FGMSKYQNR-RTMNSSDRALLNAIREINSM 117
++ LSTMI D+ + + K+Q R R N+++R L A+ E++ M
Sbjct: 100 IHDKGLSTMIDWRNRDSYGKSISSKNRAQLYRLRKWQRRIRVSNATERNLAFALSELDRM 159
Query: 118 ADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVS 177
A + L + I + + ++++ ++GRS + +A+A LY ACRQ GVPRT EI VS
Sbjct: 160 ASALGLPRNIRETSAVVYRKAVSKNLIRGRSIEGVAAAALYAACRQNGVPRTLDEIAEVS 219
Query: 178 KISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDI 237
++S+KEIGR ++ I + L + + D++ RFCS LSL VQ A I R+A E ++
Sbjct: 220 RVSRKEIGRTYRFISRELGLKLMPTSPIDYVPRFCSGLSLKGEVQSKAVEILRQAAEKEL 279
Query: 238 VPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
GR P VAAAAIY++S ++R+Q+E+ ++AGV EVTIR YK
Sbjct: 280 TSGRGPTGVAAAAIYISSILCGERRTQREVANVAGVTEVTIRNRYK 325
>gi|124486326|ref|YP_001030942.1| transcription initiation factor IIB [Methanocorpusculum labreanum
Z]
gi|124363867|gb|ABN07675.1| Transcription initiation factor IIB (TFIIB) [Methanocorpusculum
labreanum Z]
Length = 340
Score = 189 bits (480), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 112/286 (39%), Positives = 167/286 (58%), Gaps = 11/286 (3%)
Query: 8 CYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPL 67
C E L+ DY + +C CGLV+ D ID G EWR F +++ + SRVG P
Sbjct: 44 CPECGSKQLVHDYERAELVCQHCGLVLDDDFIDRGPEWRAFDHDQR-MKRSRVGAPMTFT 102
Query: 68 LNGSDLSTMI------GPGRGDASFDG---FGMSKYQNR-RTMNSSDRALLNAIREINSM 117
++ LSTMI GR +S + + + K+Q R R N+++R L A+ E++ M
Sbjct: 103 IHDKGLSTMIDWRNRDSYGRAISSKNRAQLYRLRKWQRRIRVSNATERNLAFALSELDRM 162
Query: 118 ADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVS 177
A + L + + + A +++ D ++GRS + +A+A LY ACRQ VPRT EI VS
Sbjct: 163 ASALGLPRNVRETAAVVYRDAVDKNLIRGRSIEGVAAAALYAACRQCNVPRTLDEIAEVS 222
Query: 178 KISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDI 237
++S+KEIGR ++ I + L + + GD++ RFCS L L VQ A I ++A E ++
Sbjct: 223 RVSRKEIGRTYRFISRELGLKLLPTSPGDYVPRFCSGLGLKGEVQSRAMEILKQAGEREL 282
Query: 238 VPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
GR P VAAAAIY++S S ++R+Q+E+ D+AGV EVTIR YK
Sbjct: 283 TSGRGPTGVAAAAIYISSILSGERRTQREVADVAGVTEVTIRNRYK 328
>gi|367012261|ref|XP_003680631.1| hypothetical protein TDEL_0C05310 [Torulaspora delbrueckii]
gi|359748290|emb|CCE91420.1| hypothetical protein TDEL_0C05310 [Torulaspora delbrueckii]
Length = 356
Score = 189 bits (480), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 111/326 (34%), Positives = 173/326 (53%), Gaps = 18/326 (5%)
Query: 1 MNINKVC--CYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNE-KSGVDP 57
+NI C C +P + E + GD +C+ CGLV+ D+++D SEWRTFSN+ ++G DP
Sbjct: 20 LNIVLTCPECKVYP-PKVAERFSEGDIVCALCGLVLSDKLVDTRSEWRTFSNDDQNGDDP 78
Query: 58 SRVGGPENPLLNGSDLSTMIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSM 117
SRVG NPLL+G+ LST IG G G +++ Q + M+ D L +I +
Sbjct: 79 SRVGEASNPLLDGNSLSTRIGQGEGGDLRATRDLNRAQGKNVMDKKDNELQGVFAKITML 138
Query: 118 ADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVS 177
D L K + D A +K HD K LKG+S ++I +A +++ CR+ V RTFKEI ++
Sbjct: 139 CDAAELPKIVKDCAKEAYKLCHDEKALKGKSTESIMAAAIFVGCRRADVARTFKEIQSII 198
Query: 178 KISKKEIGRCFKLILKAL-ETSVDLITTGD-----------FMSRFCSNLSLPNMVQKAA 225
+ KE + ++ L E S D D ++ RFCS+L LP + AA
Sbjct: 199 HVKTKEFFKTLSIMKGILREKSADGFIKIDTDNMSGAQNLTYIPRFCSHLGLPMQLTTAA 258
Query: 226 THIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLM 285
+ A+K E++ + G+SPI++A +IY+ + ++G I V E TI+ YK++
Sbjct: 259 EYTAKKCKEIEEIAGKSPITIAVVSIYLNILLFKLPVTAAKVGKILQVTEGTIKSGYKIL 318
Query: 286 YPHASKLFPQDFVFH--TPIHELPQL 309
Y H K+ + + LPQ+
Sbjct: 319 YEHREKIIDPQLIATGAVSLDNLPQV 344
>gi|327401743|ref|YP_004342582.1| transcription initiation factor IIB [Archaeoglobus veneficus SNP6]
gi|327317251|gb|AEA47867.1| Transcription initiation factor IIB [Archaeoglobus veneficus SNP6]
Length = 329
Score = 189 bits (479), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 112/286 (39%), Positives = 164/286 (57%), Gaps = 11/286 (3%)
Query: 8 CYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPL 67
C E LI DYR G+ IC +CGLV+ + ID G EWR F +E+ SRVG P
Sbjct: 33 CPECGSPRLIRDYRRGEFICQDCGLVIEETYIDAGPEWRAFDSEQKE-KRSRVGAPVTYT 91
Query: 68 LNGSDLSTMIGPGRGDASFDG---------FGMSKYQNR-RTMNSSDRALLNAIREINSM 117
++ LST+I D F + K+Q R R N+++R L A+ E++ M
Sbjct: 92 IHDKGLSTIIDWSNKDYYGKAISVRNRAQLFRLRKWQRRIRISNATERNLAFALSELDRM 151
Query: 118 ADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVS 177
A + L K++ + A ++++ D ++GRS + + +A LY ACRQ GVPRT EI S
Sbjct: 152 ASALGLPKSVRETAAVIYRKAVDKNLIRGRSIEGVVAAALYAACRQAGVPRTLDEIATYS 211
Query: 178 KISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDI 237
++ +KEIGR ++ I + L + + D++ RFC+ L L VQK A I +KA E ++
Sbjct: 212 RVDRKEIGRTYRFIARELGLKLMPTSPADYVPRFCAALGLSGDVQKKAIEIIKKAEEKEL 271
Query: 238 VPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
GR P VAAAAIY+AS ++R+Q+E+ ++AGV EVTIR YK
Sbjct: 272 TSGRGPTGVAAAAIYIASILGGERRTQREVAEVAGVTEVTIRNRYK 317
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 48/96 (50%), Gaps = 1/96 (1%)
Query: 208 MSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEI 267
+ R S L LP V++ A I RKAV+ +++ GRS V AAA+Y A + + R+ EI
Sbjct: 148 LDRMASALGLPKSVRETAAVIYRKAVDKNLIRGRSIEGVVAAALYAACRQAGVPRTLDEI 207
Query: 268 GDIAGVAEVTIRQSYKLMYPHAS-KLFPQDFVFHTP 302
+ V I ++Y+ + KL P + P
Sbjct: 208 ATYSRVDRKEIGRTYRFIARELGLKLMPTSPADYVP 243
>gi|365982759|ref|XP_003668213.1| hypothetical protein NDAI_0A08160 [Naumovozyma dairenensis CBS 421]
gi|343766979|emb|CCD22970.1| hypothetical protein NDAI_0A08160 [Naumovozyma dairenensis CBS 421]
Length = 400
Score = 188 bits (477), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 110/303 (36%), Positives = 172/303 (56%), Gaps = 16/303 (5%)
Query: 1 MNINKVC--CYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNE-KSGVDP 57
+NI C C +P ++E + GD +C+ CGLV+ D+++D SEWRTFSN+ ++G DP
Sbjct: 33 LNIVLTCPECKVYP-PKIVERFSEGDVVCALCGLVLSDKLVDTRSEWRTFSNDDQNGDDP 91
Query: 58 SRVGGPENPLLNGSDLSTMIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSM 117
SRVG NPLL+G++LST IG G G +++ Q + ++ D + A ++ +
Sbjct: 92 SRVGEASNPLLDGNNLSTRIGQGEGTDMRFTKELNRAQGKNIVDKKDNEVQAAFAKMTML 151
Query: 118 ADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVS 177
D L K + D A +K HD K+LKG+S+++I +A + I CR+ V RTFKEI ++
Sbjct: 152 CDAAELPKIVKDCAKEAYKLCHDEKSLKGKSSESIMAASILIGCRRAEVARTFKEIQSII 211
Query: 178 KISKKEIGRCFKLILKAL-ETSVD---LITTGD--------FMSRFCSNLSLPNMVQKAA 225
+ KE G+ ++ L E S D I T + ++ RFCS+L LP V AA
Sbjct: 212 HVKTKEFGKTLGIMKGILREKSSDGFIKINTDNMSGAQNLTYIPRFCSHLGLPMQVTTAA 271
Query: 226 THIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLM 285
+ A+K E++ + G+SPI++A +IY+ S ++G I V E TI+ YK++
Sbjct: 272 EYTAKKCKEIEEIAGKSPITIAVVSIYLNILLFKIPVSAAKVGQILQVTEGTIKSGYKIL 331
Query: 286 YPH 288
Y H
Sbjct: 332 YEH 334
>gi|324528353|gb|ADY48903.1| Transcription initiation factor IIB, partial [Ascaris suum]
Length = 181
Score = 187 bits (476), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 92/164 (56%), Positives = 119/164 (72%), Gaps = 2/164 (1%)
Query: 45 WRTFSNEKSGVDPSRVGGPENPLLNGSDLSTMIGPGRGDASFDGFGMSKYQNRRTMNSSD 104
WR+FS EKSG+DPSRVG PENPLL SDLST I G + D S RRT+N D
Sbjct: 1 WRSFSGEKSGIDPSRVGAPENPLLGSSDLSTSIAVYYGSSECDQSLAS--AQRRTLNGVD 58
Query: 105 RALLNAIREINSMADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQE 164
R + A+ I M+ R+ L K+I D A +F+ V D + L G++N+A A+ACLYIACR+E
Sbjct: 59 RQMTEALGVIREMSARMQLPKSIEDSAAKVFRDVVDTRALVGKNNEAKAAACLYIACRKE 118
Query: 165 GVPRTFKEICAVSKISKKEIGRCFKLILKALETSVDLITTGDFM 208
GVPRTFKE+CAVS++SKKEIGRCFKL +++LET+++ IT+ DFM
Sbjct: 119 GVPRTFKEVCAVSRVSKKEIGRCFKLAIRSLETNLEQITSADFM 162
>gi|383319295|ref|YP_005380136.1| transcription initiation factor TFIIB [Methanocella conradii HZ254]
gi|379320665|gb|AFC99617.1| Transcription initiation factor TFIIB [Methanocella conradii HZ254]
Length = 337
Score = 187 bits (476), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 110/288 (38%), Positives = 168/288 (58%), Gaps = 11/288 (3%)
Query: 6 VCCYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPEN 65
V C E L+ DY + +C+ECGLVV + ID+G EWR F +++ + SRVG P
Sbjct: 39 VECPECGSRQLVHDYERAELVCNECGLVVDEDFIDMGPEWRAFDHDQR-MKRSRVGAPMT 97
Query: 66 PLLNGSDLSTMIGPGRGDASFDG---------FGMSKYQNR-RTMNSSDRALLNAIREIN 115
++ LSTMI D+ + + K+Q R R N+++R L A+ E++
Sbjct: 98 FTIHDKGLSTMIDWRNRDSYGKSISSKNRAQLYRLRKWQRRIRVSNATERNLAFALSELD 157
Query: 116 SMADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICA 175
MA + L + I + + ++++ ++GRS + +A+A LY ACRQ GVPRT EI
Sbjct: 158 RMASALGLPRNIRETSAVVYRKAVTKNLIRGRSIEGVAAAALYAACRQNGVPRTLDEIAE 217
Query: 176 VSKISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVEL 235
VS++S+KEIGR ++ I + L + + D++ RFCS L+L VQ A I R+A E
Sbjct: 218 VSRVSRKEIGRTYRFISRELGLKLMPTSPIDYVPRFCSGLNLKGEVQSRAVEILRQAAEK 277
Query: 236 DIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
++ GR P VAAAAIY++S ++R+Q+E+ ++AGV EVTIR YK
Sbjct: 278 ELTSGRGPTGVAAAAIYISSILCGERRTQREVANVAGVTEVTIRNRYK 325
>gi|395646538|ref|ZP_10434398.1| Transcription initiation factor IIB [Methanofollis liminatans DSM
4140]
gi|395443278|gb|EJG08035.1| Transcription initiation factor IIB [Methanofollis liminatans DSM
4140]
Length = 336
Score = 187 bits (476), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 111/286 (38%), Positives = 167/286 (58%), Gaps = 11/286 (3%)
Query: 8 CYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPL 67
C E L+ DY + +C CGLV+ + ID G EWR F +++ V SRVG P
Sbjct: 40 CPECGSRQLVHDYERAELVCKSCGLVIDEEFIDRGPEWRAFDHDQR-VKRSRVGAPMTFT 98
Query: 68 LNGSDLSTMI------GPGRGDASFDG---FGMSKYQNR-RTMNSSDRALLNAIREINSM 117
++ LSTMI GR +S + + + K+Q R R N+++R L A+ E++ M
Sbjct: 99 IHDKGLSTMIDWRNRDSYGRAISSKNRAQLYRLRKWQRRIRVSNATERNLAFALSELDRM 158
Query: 118 ADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVS 177
A + L + + + A +++ D ++GRS + +A+A LY ACRQ VPRT EI VS
Sbjct: 159 ASALGLPRNVRETAAVIYRDAVDKNLIRGRSIEGVAAAALYAACRQCSVPRTLDEIAEVS 218
Query: 178 KISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDI 237
++S+KEIGR ++ I + L + + D++ RFCS L+L VQ A I R+A E ++
Sbjct: 219 RVSRKEIGRTYRFISRELGLKLLPTSPIDYVPRFCSGLTLKGEVQSRAVEILRQAGEREL 278
Query: 238 VPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
GR P VAAAAIY++S S ++R+Q+E+ ++AGV EVTIR YK
Sbjct: 279 TSGRGPTGVAAAAIYISSILSGERRTQREVAEVAGVTEVTIRNRYK 324
Score = 38.9 bits (89), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 52/96 (54%), Gaps = 1/96 (1%)
Query: 208 MSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEI 267
+ R S L LP V++ A I R AV+ +++ GRS VAAAA+Y A + S R+ EI
Sbjct: 155 LDRMASALGLPRNVRETAAVIYRDAVDKNLIRGRSIEGVAAAALYAACRQCSVPRTLDEI 214
Query: 268 GDIAGVAEVTIRQSYKLMYPHAS-KLFPQDFVFHTP 302
+++ V+ I ++Y+ + KL P + + P
Sbjct: 215 AEVSRVSRKEIGRTYRFISRELGLKLLPTSPIDYVP 250
>gi|312136694|ref|YP_004004031.1| transcription initiation factor iib (tfiib) [Methanothermus
fervidus DSM 2088]
gi|311224413|gb|ADP77269.1| Transcription initiation factor IIB (TFIIB) [Methanothermus
fervidus DSM 2088]
Length = 307
Score = 187 bits (476), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 101/288 (35%), Positives = 166/288 (57%), Gaps = 15/288 (5%)
Query: 8 CYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPL 67
C E LIED+ + +C +CGLV+ +++ID+G EWR F +E+ +RVG P
Sbjct: 11 CPECGSEDLIEDHERAEIVCRKCGLVIDEKLIDMGPEWRAFDHEQRE-KRTRVGAPVTYT 69
Query: 68 LNGSDLSTMIG-----------PGRGDASFDGFGMSKYQNR-RTMNSSDRALLNAIREIN 115
++ LSTMI P + A + + + K+Q + R +++R L A+ E++
Sbjct: 70 IHDKGLSTMIDWRNKDIYGKDIPAKSRAQW--YRLRKWQRKIRISGATERNLAFALSELD 127
Query: 116 SMADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICA 175
+A R+NL +T+ + A+ +++ K ++GRS + + +A LY ACR+ VPRT EI
Sbjct: 128 RIASRLNLPRTVRETASVIYRDAVKKKLIRGRSIEEVVAAALYAACRKCNVPRTLDEIAE 187
Query: 176 VSKISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVEL 235
VS + KK +GR ++ + + L + + D++ RF S L L VQ A I +KA++
Sbjct: 188 VSGVKKKGVGRTYRFLARKLNIRLPPTSPIDYVPRFASELGLSGKVQSKAIEIIKKAMKK 247
Query: 236 DIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
+ GR P VAAAA+Y+AS ++R+Q+EI ++AG+ EVTIR Y+
Sbjct: 248 GLTSGRGPTGVAAAALYIASVLLRERRTQREIAEVAGITEVTIRNRYR 295
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 55/102 (53%), Gaps = 4/102 (3%)
Query: 208 MSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEI 267
+ R S L+LP V++ A+ I R AV+ ++ GRS V AAA+Y A + + R+ EI
Sbjct: 126 LDRIASRLNLPRTVRETASVIYRDAVKKKLIRGRSIEEVVAAALYAACRKCNVPRTLDEI 185
Query: 268 GDIAGVAEVTIRQSYKLMYPHASKLFPQDFVFHTPIHELPQL 309
+++GV + + ++Y+ + + P +PI +P+
Sbjct: 186 AEVSGVKKKGVGRTYRFLARKLNIRLPPT----SPIDYVPRF 223
>gi|84490148|ref|YP_448380.1| transcription initiation factor IIB [Methanosphaera stadtmanae DSM
3091]
gi|121731831|sp|Q2NEL6.1|TF2B_METST RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|84373467|gb|ABC57737.1| transcription initiation factor IIB (TFIIB) [Methanosphaera
stadtmanae DSM 3091]
Length = 311
Score = 187 bits (475), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 102/295 (34%), Positives = 169/295 (57%), Gaps = 15/295 (5%)
Query: 1 MNINKVCCYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRV 60
M + C E LI D+ G+ +C CGLV+ D ++D+G EWR F +E+ +RV
Sbjct: 8 MEKKETKCPECGSTKLINDHERGEVVCGACGLVIDDNIVDMGPEWRAFDHEQRD-KRTRV 66
Query: 61 GGPENPLLNGSDLSTMIG-----------PGRGDASFDGFGMSKYQNR-RTMNSSDRALL 108
G P ++ LSTMI P R A + + + K+Q + R +++R L
Sbjct: 67 GAPITYTIHDKGLSTMIDWRNKDIYGRDIPARNRAQW--YRLRKWQRKIRISGATERNLA 124
Query: 109 NAIREINSMADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPR 168
A+ E++ + R+ L +++ + A+ +++ + K ++GRS + + +A LY ACR+ VPR
Sbjct: 125 FALSELDRDSSRLGLPRSVRESASVVYRNAVENKLIRGRSIEGVVAASLYAACRRCKVPR 184
Query: 169 TFKEICAVSKISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHI 228
T EI VS++SKKE+GR ++ + + L + + D++ RF S L+L +VQ A I
Sbjct: 185 TLDEIADVSRVSKKEVGRTYRFLTRELHIRLPPTSPIDYVPRFASELNLSGVVQSKAIEI 244
Query: 229 ARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
+A++ + GR P VAAAA+Y+AS ++++Q+++ DIAGV EVTIR YK
Sbjct: 245 INQAMDNGLTSGRGPTGVAAAALYIASVLLGERKTQRDVADIAGVTEVTIRNRYK 299
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 53/102 (51%), Gaps = 4/102 (3%)
Query: 208 MSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEI 267
+ R S L LP V+++A+ + R AVE ++ GRS V AA++Y A + R+ EI
Sbjct: 130 LDRDSSRLGLPRSVRESASVVYRNAVENKLIRGRSIEGVVAASLYAACRRCKVPRTLDEI 189
Query: 268 GDIAGVAEVTIRQSYKLMYPHASKLFPQDFVFHTPIHELPQL 309
D++ V++ + ++Y+ + P +PI +P+
Sbjct: 190 ADVSRVSKKEVGRTYRFLTRELHIRLPPT----SPIDYVPRF 227
>gi|160331633|ref|XP_001712523.1| tfIIB [Hemiselmis andersenii]
gi|159765972|gb|ABW98198.1| tfIIB [Hemiselmis andersenii]
Length = 344
Score = 187 bits (475), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 112/302 (37%), Positives = 174/302 (57%), Gaps = 22/302 (7%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLST 75
L+ED + GD IC ECGLV+ ID SEWR F++++ G DP+R+G P +PLL S+ T
Sbjct: 30 LLEDKKQGDLICFECGLVLTSHNIDFTSEWRCFADDQRGKDPTRIGDPNHPLLE-SNSGT 88
Query: 76 MIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADRINLTKTIVDRANNLF 135
+I G A+ ++ QN+ + +DR L + +IN ++ L K I +R LF
Sbjct: 89 LISKGLRGANNLNERLATTQNQSNLQKTDRFLTQSFSKINLFLEKNFLFKGIKERVEELF 148
Query: 136 KQVHDGKNLKG---------RSNDAIAS--ACLYIACRQEGVPRTFKEICAVSKISKKEI 184
K D L+ R ++ ++S A ++I R EG+PRTF+EI +K+ KKEI
Sbjct: 149 KSYFDYLTLRSDGSRTRYSLRKDETLSSIAASIFIVSRNEGIPRTFREIYETTKVPKKEI 208
Query: 185 G---RCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGR 241
G R + L+ ++ S + T DF+SRFCS L LP + + A +A+ E + + G+
Sbjct: 209 GSRVRAIERSLRGVKIS-KIRNTEDFISRFCSKLGLPVFISRLAEKLAKTVREKEGLYGK 267
Query: 242 SPISVAAAAIYMASQAS--SDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASK----LFPQ 295
+ ISV+AA+I++ SQ S +K + KEI +AG++E+T+R + K MYP+ K L P
Sbjct: 268 NYISVSAASIHVISQLSPIKNKCTAKEIAKVAGISEITLRLTQKAMYPYRDKILKTLIPP 327
Query: 296 DF 297
+F
Sbjct: 328 NF 329
>gi|148642484|ref|YP_001272997.1| transcription initiation factor IIB [Methanobrevibacter smithii
ATCC 35061]
gi|222446016|ref|ZP_03608531.1| hypothetical protein METSMIALI_01665 [Methanobrevibacter smithii
DSM 2375]
gi|261349445|ref|ZP_05974862.1| transcription initiation factor IIB [Methanobrevibacter smithii DSM
2374]
gi|189029858|sp|A5UKA1.1|TF2B_METS3 RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|148551501|gb|ABQ86629.1| transcription initiation factor TFIIB (zinc-binding)
[Methanobrevibacter smithii ATCC 35061]
gi|222435581|gb|EEE42746.1| transcription initiation factor IIB [Methanobrevibacter smithii DSM
2375]
gi|288861808|gb|EFC94106.1| transcription initiation factor IIB [Methanobrevibacter smithii DSM
2374]
Length = 310
Score = 187 bits (474), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 101/292 (34%), Positives = 165/292 (56%), Gaps = 15/292 (5%)
Query: 4 NKVCCYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGP 63
+ C E LI DY + +C+ CGLV+ + ++D+G EWR F +E+ +RVG P
Sbjct: 10 KQTVCPECGSTELIGDYERAEVVCAHCGLVIDENLVDMGPEWRAFDHEQRD-KRTRVGAP 68
Query: 64 ENPLLNGSDLSTMIG-----------PGRGDASFDGFGMSKYQNR-RTMNSSDRALLNAI 111
++ LSTMI P R A + + + K+Q + R +++R L A+
Sbjct: 69 ITYTIHDKGLSTMIDWRNKDIYGRDIPARNRAQW--YRLRKWQRKIRISGATERNLAFAL 126
Query: 112 REINSMADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFK 171
E++ + R+ L +++ + A+ +++ D K ++GRS + + +A LY ACR+ VPRT
Sbjct: 127 SELDRDSSRLGLPRSVREAASVVYRSAVDNKLIRGRSIEGVVAASLYAACRRCNVPRTLD 186
Query: 172 EICAVSKISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARK 231
EI VS+++KKE+GR ++ + + L + + D++ RF S L L Q A I K
Sbjct: 187 EIAEVSRVTKKEVGRTYRFLTRELNIKLPPTSPVDYVPRFASELGLSGEAQSRAIEIIEK 246
Query: 232 AVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
A+E + GR P VAAAA+Y+AS ++++Q+++ DIAGV EVTIR YK
Sbjct: 247 AMEKGLTSGRGPTGVAAAALYIASVLLGERKTQRDVADIAGVTEVTIRNRYK 298
Score = 46.6 bits (109), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 53/96 (55%), Gaps = 1/96 (1%)
Query: 208 MSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEI 267
+ R S L LP V++AA+ + R AV+ ++ GRS V AA++Y A + + R+ EI
Sbjct: 129 LDRDSSRLGLPRSVREAASVVYRSAVDNKLIRGRSIEGVVAASLYAACRRCNVPRTLDEI 188
Query: 268 GDIAGVAEVTIRQSYKLMYPHAS-KLFPQDFVFHTP 302
+++ V + + ++Y+ + + KL P V + P
Sbjct: 189 AEVSRVTKKEVGRTYRFLTRELNIKLPPTSPVDYVP 224
>gi|410084090|ref|XP_003959622.1| hypothetical protein KAFR_0K01330 [Kazachstania africana CBS 2517]
gi|372466214|emb|CCF60487.1| hypothetical protein KAFR_0K01330 [Kazachstania africana CBS 2517]
Length = 355
Score = 187 bits (474), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 116/326 (35%), Positives = 179/326 (54%), Gaps = 18/326 (5%)
Query: 1 MNINKVC--CYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNE-KSGVDP 57
+NI C C +P ++E + GD +C+ CGLV+ D+++D SEWRTFSN+ ++G DP
Sbjct: 18 LNIVLTCPECRVYP-PKIVERFSEGDVVCALCGLVLSDKLVDTRSEWRTFSNDDQNGDDP 76
Query: 58 SRVGGPENPLLNGSDLSTMIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSM 117
SRVG NPLL+G++LST IG G G +++ Q + ++ D + A +I +
Sbjct: 77 SRVGEASNPLLDGNNLSTRIGQGEGTDMRFTKELNRAQGKNVVDKKDNEVQAAFAKITML 136
Query: 118 ADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVS 177
D L K + D A +K HD K+LKG+S ++I +A + I CR+ V RTFKEI ++
Sbjct: 137 CDAAELPKIVKDCAKEAYKLCHDEKSLKGKSTESIMAASILIGCRRAQVARTFKEIQSII 196
Query: 178 KISKKEIGRCFKLILKAL-ETSVD---LITTGD--------FMSRFCSNLSLPNMVQKAA 225
+ KE G+ ++ L E S D I T + ++ RFCS+L LP V A+
Sbjct: 197 HVKTKEFGKTLGIMKGILREKSSDGFIKINTDNMSGAQNLTYIPRFCSHLGLPMQVTTAS 256
Query: 226 THIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLM 285
+ A+K E++ + G+SPI++A +IY+ S ++ I V E TI+ YK++
Sbjct: 257 EYTAKKCKEIEEIAGKSPITIAVVSIYLNILLFKIPVSAAKVAQILQVTEGTIKSGYKIL 316
Query: 286 YPHAS-KLFPQDFVFHT-PIHELPQL 309
Y H + PQ T I LP+L
Sbjct: 317 YEHRDIAVDPQLIANGTVSIDNLPKL 342
>gi|219851004|ref|YP_002465436.1| transcription initiation factor IIB [Methanosphaerula palustris
E1-9c]
gi|254784087|sp|B8GJQ9.1|TF2B_METPE RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|219545263|gb|ACL15713.1| Transcription factor TFIIB cyclin-related [Methanosphaerula
palustris E1-9c]
Length = 334
Score = 186 bits (473), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 110/286 (38%), Positives = 166/286 (58%), Gaps = 11/286 (3%)
Query: 8 CYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPL 67
C E L+ DY + +C CGLV+ D ID G EWR F +++ + SRVG P
Sbjct: 38 CPECKSRQLVHDYERAELVCQNCGLVIDDDFIDRGPEWRAFDHDQR-MKRSRVGAPMTFT 96
Query: 68 LNGSDLSTMI------GPGRGDASFDG---FGMSKYQNR-RTMNSSDRALLNAIREINSM 117
++ LSTMI GR +S + + + K+Q R R N+++R L A+ E++ M
Sbjct: 97 IHDKGLSTMIDWRNRDSYGRAISSKNRAQLYRLRKWQRRIRVSNATERNLAFALSELDRM 156
Query: 118 ADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVS 177
A + L + + + A +++ D ++GRS + +A+A LY ACRQ VPRT EI VS
Sbjct: 157 ASALGLPRNVRETAAVVYRDAVDKNLIRGRSIEGVAAAALYAACRQCSVPRTLDEIAEVS 216
Query: 178 KISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDI 237
++S+KEIGR ++ I + L + + D++ RFCS L+L VQ A I R+A E ++
Sbjct: 217 RVSRKEIGRTYRFISRELGLKLLPTSPIDYVPRFCSGLTLKGEVQSRAVEILRQAAEREL 276
Query: 238 VPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
GR P VAAAAIY++S ++R+Q+E+ ++AGV EVTIR YK
Sbjct: 277 TSGRGPTGVAAAAIYISSILGGERRTQREVAEVAGVTEVTIRNRYK 322
Score = 38.5 bits (88), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 52/96 (54%), Gaps = 1/96 (1%)
Query: 208 MSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEI 267
+ R S L LP V++ A + R AV+ +++ GRS VAAAA+Y A + S R+ EI
Sbjct: 153 LDRMASALGLPRNVRETAAVVYRDAVDKNLIRGRSIEGVAAAALYAACRQCSVPRTLDEI 212
Query: 268 GDIAGVAEVTIRQSYKLMYPHAS-KLFPQDFVFHTP 302
+++ V+ I ++Y+ + KL P + + P
Sbjct: 213 AEVSRVSRKEIGRTYRFISRELGLKLLPTSPIDYVP 248
>gi|50292269|ref|XP_448567.1| hypothetical protein [Candida glabrata CBS 138]
gi|49527879|emb|CAG61530.1| unnamed protein product [Candida glabrata]
Length = 363
Score = 186 bits (473), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 109/311 (35%), Positives = 171/311 (54%), Gaps = 17/311 (5%)
Query: 1 MNINKVC--CYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNE-KSGVDP 57
+NI C C +P ++E + GD +C+ CGLV+ D+++D SEWRTFSN+ ++G DP
Sbjct: 19 LNIVLTCPECKVYP-PKIVERFSEGDVVCALCGLVLSDKLVDTRSEWRTFSNDDQNGDDP 77
Query: 58 SRVGGPENPLLNGSDLSTMIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSM 117
SRVG NPLL+G++LST IG G +++ Q + ++ D + A +I +
Sbjct: 78 SRVGEASNPLLDGNNLSTKIGQGETTDMRFTKELNRAQGKNVLDKKDNEIQAAFAKITML 137
Query: 118 ADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVS 177
D L K + D A +K HD K LKG+S+++I +A + + CR+ V RTFKEI ++
Sbjct: 138 CDASELPKIVKDCAKEAYKLCHDEKALKGKSSESIMAASILLGCRRAEVARTFKEIQSII 197
Query: 178 KISKKEIGRCFKLILKAL-ETSVDLITTGD-----------FMSRFCSNLSLPNMVQKAA 225
+ KE G+ ++ L E S D D ++ RFCS+L LP V +A
Sbjct: 198 HVKTKEFGKTLGIMKNILREKSADGFIKIDTDNMSGAQNLTYIPRFCSHLGLPMQVTTSA 257
Query: 226 THIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLM 285
+ A+K E++ + G+SPI++A +IY+ S +G I V E TI+ YK++
Sbjct: 258 EYTAKKCKEIEEIAGKSPITIAVVSIYLNILLFKIPVSAARVGQILQVTEGTIKSGYKIL 317
Query: 286 YPHASKLF-PQ 295
+ H K+ PQ
Sbjct: 318 FDHKEKVVDPQ 328
>gi|349804613|gb|AEQ17779.1| putative general transcription factor iib isoform 2 [Hymenochirus
curtipes]
Length = 200
Score = 186 bits (472), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 98/189 (51%), Positives = 124/189 (65%), Gaps = 22/189 (11%)
Query: 3 INKVCCYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGG 62
+ KV C HPDA L+EDYRAGD IC ECGLVVGDRVIDVGSEWRTFSN+K+ DPSRVG
Sbjct: 10 LPKVTCPNHPDAILVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGD 69
Query: 63 PENPLLNGSDLSTMIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADRIN 122
+NPLL+G DL+TMIG G G ASFD FG SKYQNRRTM+SSDRA++N I A ++
Sbjct: 70 TQNPLLSGGDLTTMIGKGTGTASFDEFGNSKYQNRRTMSSSDRAMMNTY--IARKAVELD 127
Query: 123 LTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKK 182
L + GRS ++A+A +Y+A + RT KEI ++ ++
Sbjct: 128 L--------------------VPGRSPISVAAAAIYMASQASAEKRTQKEIGDIAGVADV 167
Query: 183 EIGRCFKLI 191
I + ++LI
Sbjct: 168 TIRQSYRLI 176
Score = 142 bits (359), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 67/84 (79%), Positives = 77/84 (91%)
Query: 226 THIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLM 285
T+IARKAVELD+VPGRSPISVAAAAIYMASQAS++KR+QKEIGDIAGVA+VTIRQSY+L+
Sbjct: 117 TYIARKAVELDLVPGRSPISVAAAAIYMASQASAEKRTQKEIGDIAGVADVTIRQSYRLI 176
Query: 286 YPHASKLFPQDFVFHTPIHELPQL 309
YP A LFP DF F TP+ +LPQL
Sbjct: 177 YPRAPDLFPADFKFDTPVDKLPQL 200
>gi|401842172|gb|EJT44429.1| SUA7-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 345
Score = 186 bits (472), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 112/311 (36%), Positives = 170/311 (54%), Gaps = 17/311 (5%)
Query: 1 MNINKVC--CYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNE-KSGVDP 57
+NI C C +P ++E + GD +C+ CGLV+ D+++D SEWRTFSN+ +G DP
Sbjct: 18 LNIVLTCPECKVYP-PKIVERFSEGDVVCALCGLVLSDKLVDTRSEWRTFSNDDHNGDDP 76
Query: 58 SRVGGPENPLLNGSDLSTMIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSM 117
SRVG NPLL+G++LST IG G ++K Q + M+ D + A +I +
Sbjct: 77 SRVGEASNPLLDGNNLSTRIGKGETTDMRFTKELNKAQGKNVMDKKDNEVHAAFAKITML 136
Query: 118 ADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVS 177
D L K + D A +K HD K LKG+S ++I +A + I CR+ V RTFKEI ++
Sbjct: 137 CDAAELPKIVKDCAKEAYKLCHDEKALKGKSMESIMAASILIGCRRAEVARTFKEIQSLI 196
Query: 178 KISKKEIGRCFKL---ILKA------LETSVDLITTGD---FMSRFCSNLSLPNMVQKAA 225
+ KE G+ + IL+ L+ D ++ ++ RFCS+L LP V +A
Sbjct: 197 HVKTKEFGKTLNIMKNILRGKSEDGFLKIDTDNMSGAQNLTYIPRFCSHLGLPMQVTTSA 256
Query: 226 THIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLM 285
+ A+K E+ + G+SPI++A +IY+ S ++G V E TI+ YK++
Sbjct: 257 EYTAKKCKEIKEIAGKSPITIAVVSIYLNVLLFKIPISAAKVGQTLQVTEGTIKSGYKIL 316
Query: 286 YPHASKLF-PQ 295
Y H KL PQ
Sbjct: 317 YEHRDKLVDPQ 327
>gi|365757889|gb|EHM99760.1| Sua7p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 352
Score = 186 bits (472), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 112/311 (36%), Positives = 170/311 (54%), Gaps = 17/311 (5%)
Query: 1 MNINKVC--CYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNE-KSGVDP 57
+NI C C +P ++E + GD +C+ CGLV+ D+++D SEWRTFSN+ +G DP
Sbjct: 18 LNIVLTCPECKVYP-PKIVERFSEGDVVCALCGLVLSDKLVDTRSEWRTFSNDDHNGDDP 76
Query: 58 SRVGGPENPLLNGSDLSTMIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSM 117
SRVG NPLL+G++LST IG G ++K Q + M+ D + A +I +
Sbjct: 77 SRVGEASNPLLDGNNLSTRIGKGETTDMRFTKELNKAQGKNVMDKKDNEVHAAFAKITML 136
Query: 118 ADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVS 177
D L K + D A +K HD K LKG+S ++I +A + I CR+ V RTFKEI ++
Sbjct: 137 CDAAELPKIVKDCAKEAYKLCHDEKALKGKSMESIMAASILIGCRRAEVARTFKEIQSLI 196
Query: 178 KISKKEIGRCFKL---ILKA------LETSVDLITTGD---FMSRFCSNLSLPNMVQKAA 225
+ KE G+ + IL+ L+ D ++ ++ RFCS+L LP V +A
Sbjct: 197 HVKTKEFGKTLNIMKNILRGKSEDGFLKIDTDNMSGAQNLTYIPRFCSHLGLPMQVTTSA 256
Query: 226 THIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLM 285
+ A+K E+ + G+SPI++A +IY+ S ++G V E TI+ YK++
Sbjct: 257 EYTAKKCKEIKEIAGKSPITIAVVSIYLNVLLFKIPISAAKVGQTLQVTEGTIKSGYKIL 316
Query: 286 YPHASKLF-PQ 295
Y H KL PQ
Sbjct: 317 YEHRDKLVDPQ 327
>gi|385301292|gb|EIF45494.1| transcription initiation factor iib [Dekkera bruxellensis AWRI1499]
Length = 358
Score = 186 bits (472), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 111/317 (35%), Positives = 175/317 (55%), Gaps = 21/317 (6%)
Query: 1 MNINKVC--CYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNE-KSGVDP 57
+N+ C C +P LIE + GD +C+ CGLV+ D +ID SEWRTF+N+ ++G DP
Sbjct: 24 LNVVLTCPECKVYP-PELIERHSDGDIVCALCGLVLSDHLIDSRSEWRTFNNDDQNGDDP 82
Query: 58 SRVGGPENPLLNGSDLSTMIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSM 117
SRVG +L+ LST+I + + +++ Q + + D AL A +I+ M
Sbjct: 83 SRVGEASASVLDSDQLSTVISNSQ-EGGRVARELNRTQGKSVADKKDHALQTAYAKISQM 141
Query: 118 ADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVS 177
D L K + D A ++K V+D K L+G+S ++I +A +++ CR+ VPR+FKEI A++
Sbjct: 142 CDGYQLPKVVQDGAKEVYKLVYDDKMLRGKSQESIMAAAIFLGCRKASVPRSFKEIWALT 201
Query: 178 KISKKEIGRCFKLILKALET-----------SVDLITTG-----DFMSRFCSNLSLPNMV 221
+ +KEIG+ FK+I + + D I T D + RFCS+L L +
Sbjct: 202 NVPRKEIGKTFKVINQIIRKKNAEHGGLITYQNDNIATTQTNPEDLVGRFCSHLGLTPQI 261
Query: 222 QKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQS 281
+A HIARK E+ ++ GRSP ++AA IY A+ S + I + GV+E TI+ S
Sbjct: 262 TSSARHIARKLREVGVLEGRSPTTIAATVIYFATLLFKQHISLQRISEKTGVSEGTIKSS 321
Query: 282 YKLMYPHASKLFPQDFV 298
YK + +L ++
Sbjct: 322 YKQLCTAKEQLVDPSWI 338
>gi|255716964|ref|XP_002554763.1| KLTH0F13200p [Lachancea thermotolerans]
gi|238936146|emb|CAR24326.1| KLTH0F13200p [Lachancea thermotolerans CBS 6340]
Length = 359
Score = 186 bits (472), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 111/314 (35%), Positives = 177/314 (56%), Gaps = 21/314 (6%)
Query: 1 MNINKVC--CYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNE-KSGVDP 57
+NI C C +P + E + GD +C+ CGLV+ DR++D SEWRTFSN+ ++G DP
Sbjct: 22 LNIVVSCPECKIYP-PKVAERFSEGDVVCAMCGLVLSDRIVDTRSEWRTFSNDDQNGDDP 80
Query: 58 SRVGGPENPLLNGSDLSTMIGPGRG-DASFDGFGMSKYQNRRTMNSSDRALLNAIREINS 116
SRVG NPLL+G+ LST IG +G D F +++ Q++ ++ D L A +I
Sbjct: 81 SRVGEASNPLLDGNHLSTRIGQAQGSDVKFTR-DLNRAQSKSIVDKKDNELQAAYAKITM 139
Query: 117 MADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAV 176
M D L K + D A +K ++ + LKG+S ++I ++ + + CR+ V R+FKEI ++
Sbjct: 140 MCDAAELPKIVKDCAKEAYKICYEERALKGKSQESIMASVILVGCRRAEVGRSFKEILSL 199
Query: 177 SKISKKEIGRCFKLILKALE-------TSVDLITTGD-------FMSRFCSNLSLPNMVQ 222
+ + KKEIG+ F +I L ++D T F+ RFCS+L L +
Sbjct: 200 TNVKKKEIGKTFTIIKSILREKNANGFANIDTATISSGQTSAETFIPRFCSHLGLSVQIA 259
Query: 223 KAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSY 282
AA + A+ +++++ G+SPI++AA+AIY+A Q S ++ V E TI+ Y
Sbjct: 260 NAAEYTAKHCKDINVLAGKSPITIAASAIYLAIQLFKVNISASQVSHTLQVTEGTIKGGY 319
Query: 283 KLMYPHASKLF-PQ 295
K++Y K+ PQ
Sbjct: 320 KILYEFRDKVVDPQ 333
>gi|6325343|ref|NP_015411.1| Sua7p [Saccharomyces cerevisiae S288c]
gi|135633|sp|P29055.1|TF2B_YEAST RecName: Full=Transcription initiation factor IIB; AltName:
Full=General transcription factor TFIIB; AltName:
Full=Transcription factor E
gi|269914562|pdb|3K7A|M Chain M, Crystal Structure Of An Rna Polymerase Ii-Tfiib Complex
gi|414145458|pdb|4BBR|M Chain M, Structure Of Rna Polymerase Ii-tfiib Complex
gi|414145471|pdb|4BBS|M Chain M, Structure Of An Initially Transcribing Rna Polymerase Ii-
Tfiib Complex
gi|172777|gb|AAA35126.1| Sua7 [Saccharomyces cerevisiae]
gi|1230692|gb|AAB68135.1| Sua7p: Transcription initiation factor IIB (Swiss Prot. accession
number P29055) [Saccharomyces cerevisiae]
gi|285815612|tpg|DAA11504.1| TPA: Sua7p [Saccharomyces cerevisiae S288c]
gi|392296094|gb|EIW07197.1| Sua7p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 345
Score = 186 bits (472), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 111/311 (35%), Positives = 170/311 (54%), Gaps = 17/311 (5%)
Query: 1 MNINKVC--CYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNE-KSGVDP 57
+NI C C +P ++E + GD +C+ CGLV+ D+++D SEWRTFSN+ +G DP
Sbjct: 18 LNIVLTCPECKVYP-PKIVERFSEGDVVCALCGLVLSDKLVDTRSEWRTFSNDDHNGDDP 76
Query: 58 SRVGGPENPLLNGSDLSTMIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSM 117
SRVG NPLL+G++LST IG G ++K Q + M+ D + A +I +
Sbjct: 77 SRVGEASNPLLDGNNLSTRIGKGETTDMRFTKELNKAQGKNVMDKKDNEVQAAFAKITML 136
Query: 118 ADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVS 177
D L K + D A +K HD K LKG+S ++I +A + I CR+ V RTFKEI ++
Sbjct: 137 CDAAELPKIVKDCAKEAYKLCHDEKTLKGKSMESIMAASILIGCRRAEVARTFKEIQSLI 196
Query: 178 KISKKEIGRCFKL---ILKA------LETSVDLITTGD---FMSRFCSNLSLPNMVQKAA 225
+ KE G+ + IL+ L+ D ++ ++ RFCS+L LP V +A
Sbjct: 197 HVKTKEFGKTLNIMKNILRGKSEDGFLKIDTDNMSGAQNLTYIPRFCSHLGLPMQVTTSA 256
Query: 226 THIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLM 285
+ A+K E+ + G+SPI++A +IY+ + ++G V E TI+ YK++
Sbjct: 257 EYTAKKCKEIKEIAGKSPITIAVVSIYLNILLFQIPITAAKVGQTLQVTEGTIKSGYKIL 316
Query: 286 YPHASKLF-PQ 295
Y H KL PQ
Sbjct: 317 YEHRDKLVDPQ 327
>gi|51013915|gb|AAT93251.1| YPR086W [Saccharomyces cerevisiae]
Length = 345
Score = 186 bits (472), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 111/311 (35%), Positives = 170/311 (54%), Gaps = 17/311 (5%)
Query: 1 MNINKVC--CYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNE-KSGVDP 57
+NI C C +P ++E + GD +C+ CGLV+ D+++D SEWRTFSN+ +G DP
Sbjct: 18 LNIVLTCPECKVYP-PKIVERFSEGDVVCALCGLVLSDKLVDTRSEWRTFSNDDHNGDDP 76
Query: 58 SRVGGPENPLLNGSDLSTMIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSM 117
SRVG NPLL+G++LST IG G ++K Q + M+ D + A +I +
Sbjct: 77 SRVGEASNPLLDGNNLSTRIGKGETTDMRFTKELNKAQGKNVMDKKDNEVQAAFAKITML 136
Query: 118 ADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVS 177
D L K + D A +K HD K LKG+S ++I +A + I CR+ V RTFKEI ++
Sbjct: 137 CDAAELPKIVKDCAKEAYKLCHDEKTLKGKSMESIMAASILIGCRRAEVARTFKEIQSLI 196
Query: 178 KISKKEIGRCFKL---ILKA------LETSVDLITTGD---FMSRFCSNLSLPNMVQKAA 225
+ KE G+ + IL+ L+ D ++ ++ RFCS+L LP V +A
Sbjct: 197 HVKTKEFGKTLNIMKNILRGKSEDGFLKIDTDNMSGAQNLTYIPRFCSHLGLPMQVTTSA 256
Query: 226 THIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLM 285
+ A+K E+ + G+SPI++A +IY+ + ++G V E TI+ YK++
Sbjct: 257 EYTAKKCKEIKEIAGKSPITIAVVSIYLNILLFQIPITAAKVGQTLQVTEGTIKSGYKIL 316
Query: 286 YPHASKLF-PQ 295
Y H KL PQ
Sbjct: 317 YEHRDKLVDPQ 327
>gi|207340326|gb|EDZ68710.1| YPR086Wp-like protein [Saccharomyces cerevisiae AWRI1631]
Length = 331
Score = 186 bits (472), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 111/311 (35%), Positives = 170/311 (54%), Gaps = 17/311 (5%)
Query: 1 MNINKVC--CYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNE-KSGVDP 57
+NI C C +P ++E + GD +C+ CGLV+ D+++D SEWRTFSN+ +G DP
Sbjct: 4 LNIVLTCPECKVYP-PKIVERFSEGDVVCALCGLVLSDKLVDTRSEWRTFSNDDHNGDDP 62
Query: 58 SRVGGPENPLLNGSDLSTMIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSM 117
SRVG NPLL+G++LST IG G ++K Q + M+ D + A +I +
Sbjct: 63 SRVGEASNPLLDGNNLSTRIGKGETTDMRFTKELNKAQGKNVMDKKDNEVQAAFAKITML 122
Query: 118 ADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVS 177
D L K + D A +K HD K LKG+S ++I +A + I CR+ V RTFKEI ++
Sbjct: 123 CDAAELPKIVKDCAKEAYKLCHDEKTLKGKSMESIMAASILIGCRRAEVARTFKEIQSLI 182
Query: 178 KISKKEIGRCFKL---ILKA------LETSVDLITTGD---FMSRFCSNLSLPNMVQKAA 225
+ KE G+ + IL+ L+ D ++ ++ RFCS+L LP V +A
Sbjct: 183 HVKTKEFGKTLNIMKNILRGKSEDGFLKIDTDNMSGAQNLTYIPRFCSHLGLPMQVTTSA 242
Query: 226 THIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLM 285
+ A+K E+ + G+SPI++A +IY+ + ++G V E TI+ YK++
Sbjct: 243 EYTAKKCKEIKEIAGKSPITIAVVSIYLNILLFQIPITAAKVGQTLQVTEGTIKSGYKIL 302
Query: 286 YPHASKLF-PQ 295
Y H KL PQ
Sbjct: 303 YEHRDKLVDPQ 313
>gi|151942867|gb|EDN61213.1| TFIIB [Saccharomyces cerevisiae YJM789]
gi|190408019|gb|EDV11284.1| transcription initiation factor IIB [Saccharomyces cerevisiae
RM11-1a]
gi|256272187|gb|EEU07182.1| Sua7p [Saccharomyces cerevisiae JAY291]
gi|259150239|emb|CAY87042.1| Sua7p [Saccharomyces cerevisiae EC1118]
gi|323306830|gb|EGA60115.1| Sua7p [Saccharomyces cerevisiae FostersO]
gi|323331334|gb|EGA72752.1| Sua7p [Saccharomyces cerevisiae AWRI796]
gi|323335165|gb|EGA76455.1| Sua7p [Saccharomyces cerevisiae Vin13]
gi|323346315|gb|EGA80605.1| Sua7p [Saccharomyces cerevisiae Lalvin QA23]
gi|323350223|gb|EGA84370.1| Sua7p [Saccharomyces cerevisiae VL3]
gi|349581892|dbj|GAA27049.1| K7_Sua7p [Saccharomyces cerevisiae Kyokai no. 7]
gi|365762560|gb|EHN04094.1| Sua7p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 345
Score = 186 bits (472), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 111/311 (35%), Positives = 170/311 (54%), Gaps = 17/311 (5%)
Query: 1 MNINKVC--CYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNE-KSGVDP 57
+NI C C +P ++E + GD +C+ CGLV+ D+++D SEWRTFSN+ +G DP
Sbjct: 18 LNIVLTCPECKVYP-PKIVERFSEGDVVCALCGLVLSDKLVDTRSEWRTFSNDDHNGDDP 76
Query: 58 SRVGGPENPLLNGSDLSTMIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSM 117
SRVG NPLL+G++LST IG G ++K Q + M+ D + A +I +
Sbjct: 77 SRVGEASNPLLDGNNLSTRIGKGETTDMRFTKELNKAQGKNVMDKKDNEVQAAFAKITML 136
Query: 118 ADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVS 177
D L K + D A +K HD K LKG+S ++I +A + I CR+ V RTFKEI ++
Sbjct: 137 CDAAELPKIVKDCAKEAYKLCHDEKTLKGKSMESIMAASILIGCRRAEVARTFKEIQSLI 196
Query: 178 KISKKEIGRCFKL---ILKA------LETSVDLITTGD---FMSRFCSNLSLPNMVQKAA 225
+ KE G+ + IL+ L+ D ++ ++ RFCS+L LP V +A
Sbjct: 197 HVKTKEFGKTLNIMKNILRGKSEDGFLKIDTDNMSGAQNLTYIPRFCSHLGLPMQVTTSA 256
Query: 226 THIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLM 285
+ A+K E+ + G+SPI++A +IY+ + ++G V E TI+ YK++
Sbjct: 257 EYTAKKCKEIKEIAGKSPITIAVVSIYLNILLFQIPITAAKVGQTLQVTEGTIKSGYKIL 316
Query: 286 YPHASKLF-PQ 295
Y H KL PQ
Sbjct: 317 YEHRDKLVDPQ 327
>gi|403214076|emb|CCK68577.1| hypothetical protein KNAG_0B01300 [Kazachstania naganishii CBS
8797]
Length = 369
Score = 186 bits (472), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 116/326 (35%), Positives = 178/326 (54%), Gaps = 18/326 (5%)
Query: 1 MNINKVC--CYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNE-KSGVDP 57
+NI C C +P ++E + GD +C+ CGLV+ DR++D SEWRTFSN+ ++G DP
Sbjct: 31 LNIVLTCPECKVYP-PKIVERFAEGDVVCALCGLVLSDRLVDTRSEWRTFSNDDQNGDDP 89
Query: 58 SRVGGPENPLLNGSDLSTMIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSM 117
SRVG NPLL+G++LST IG G +++ Q + ++ D + A +I +
Sbjct: 90 SRVGEASNPLLDGNNLSTRIGQGENTDMRFTKELNRAQGKNVVDKKDNEVHAAFAKITML 149
Query: 118 ADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVS 177
+D L K + D A +K HD K+LKG+S ++I +A + I CR+ V RTFKEI ++
Sbjct: 150 SDAAELPKIVKDCAKEAYKLCHDEKSLKGKSTESIIAASILIGCRRAEVARTFKEIQSII 209
Query: 178 KISKKEIGRCFKLILKAL-ETSVD---LITTGD--------FMSRFCSNLSLPNMVQKAA 225
+ KE + ++ L E S D I T + ++ RFCS+L LP V AA
Sbjct: 210 HVKTKEFSKTLSIMKGILREKSSDGFIKINTDNMSGAQNLTYIPRFCSHLGLPMQVTTAA 269
Query: 226 THIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLM 285
+ A+K E++ + G+SPI++A +IY+ S ++ I V E TI+ YK++
Sbjct: 270 EYTAKKCKEIEEIAGKSPITIAVVSIYLNILLFKIPVSASKVAQILQVTEGTIKSGYKIL 329
Query: 286 YPHASKLF-PQDFVFHT-PIHELPQL 309
Y H K PQ T + +LP L
Sbjct: 330 YDHREKCVEPQLLASGTVSLDDLPCL 355
>gi|432329785|ref|YP_007247928.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Methanoregula formicicum SMSP]
gi|432136494|gb|AGB01421.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Methanoregula formicicum SMSP]
Length = 336
Score = 186 bits (472), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 111/292 (38%), Positives = 168/292 (57%), Gaps = 11/292 (3%)
Query: 2 NINKVCCYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVG 61
N + C E L+ DY + +C CGLV+ D ID G EWR F +++ + SRVG
Sbjct: 34 NHTETVCPECGGRQLVHDYERAELVCQSCGLVIDDDFIDRGPEWRAFDHDQR-MKRSRVG 92
Query: 62 GPENPLLNGSDLSTMI------GPGRGDASFDG---FGMSKYQNR-RTMNSSDRALLNAI 111
P ++ LSTMI GR +S + + + K+Q R R N+++R L A+
Sbjct: 93 APMTFTIHDKGLSTMIDWRNRDSYGRAISSKNRAQLYRLRKWQRRIRVSNATERNLAFAL 152
Query: 112 REINSMADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFK 171
E++ MA + L + + + A +++ D ++GRS + +A+A LY ACRQ VPRT
Sbjct: 153 SELDRMASALGLPRNVRETAAVVYRDAVDKNLIRGRSIEGVAAAALYAACRQCSVPRTLD 212
Query: 172 EICAVSKISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARK 231
EI VS++S+KEIGR ++ I + L + + D++ RFCS L+L VQ A I R+
Sbjct: 213 EIAEVSRVSRKEIGRTYRFISRELGLKLLPTSPIDYVPRFCSGLTLKGEVQSRAVEILRQ 272
Query: 232 AVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
A E ++ GR P VAAAAIY++S ++R+Q+E+ ++AGV EVTIR YK
Sbjct: 273 AGERELTSGRGPTGVAAAAIYISSILGGERRTQREVAEVAGVTEVTIRNRYK 324
Score = 38.5 bits (88), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 52/96 (54%), Gaps = 1/96 (1%)
Query: 208 MSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEI 267
+ R S L LP V++ A + R AV+ +++ GRS VAAAA+Y A + S R+ EI
Sbjct: 155 LDRMASALGLPRNVRETAAVVYRDAVDKNLIRGRSIEGVAAAALYAACRQCSVPRTLDEI 214
Query: 268 GDIAGVAEVTIRQSYKLMYPHAS-KLFPQDFVFHTP 302
+++ V+ I ++Y+ + KL P + + P
Sbjct: 215 AEVSRVSRKEIGRTYRFISRELGLKLLPTSPIDYVP 250
>gi|298675089|ref|YP_003726839.1| transcription factor tFIIB cyclin-like protein [Methanohalobium
evestigatum Z-7303]
gi|298288077|gb|ADI74043.1| Transcription factor TFIIB cyclin-related protein [Methanohalobium
evestigatum Z-7303]
Length = 341
Score = 186 bits (471), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 115/293 (39%), Positives = 171/293 (58%), Gaps = 17/293 (5%)
Query: 3 INKVCCYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGG 62
+NK C E L +DY + +CS+CGLVV ++D G EWR F +++ + SRVG
Sbjct: 42 VNK--CPECGSINLEQDYERAELVCSDCGLVVDAELVDEGPEWRAFDSDQQ-MKRSRVGA 98
Query: 63 PENPLLNGSDLSTMIGPGRGDASFDG---------FGMSKYQNR-RTMNSSDRALLNAIR 112
P ++ LSTMI D+ + + K+Q R R N+++R L A+
Sbjct: 99 PMTYAIHDKGLSTMIDWRNRDSYGQSISSKNRAQLYRLRKWQRRIRIYNAAERNLAFALS 158
Query: 113 EINSMADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKE 172
E++ MA + L +T+ + A ++++ D ++GRS + +A+A LY ACRQ VPRT E
Sbjct: 159 ELDRMASALGLPRTVRETAAVVYRKAVDKNLIRGRSIEGVAAAALYAACRQCSVPRTLDE 218
Query: 173 ICAVSKISKKEIGRCFKLILKALETSVDLITTG--DFMSRFCSNLSLPNMVQKAATHIAR 230
I VS++S+ EIGR ++ I + L S+ L+ T D++ RFCS L L + VQ I R
Sbjct: 219 IGEVSRVSRIEIGRTYRFISREL--SLKLMPTSPIDYVPRFCSGLKLKSEVQSKGVEILR 276
Query: 231 KAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
+A E +I GR P VAAAAIY+AS ++R+Q+E+ D+AGV EVTIR YK
Sbjct: 277 QASEKEITSGRGPTGVAAAAIYIASMLCGERRTQREVADVAGVTEVTIRNRYK 329
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 56/96 (58%), Gaps = 1/96 (1%)
Query: 208 MSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEI 267
+ R S L LP V++ A + RKAV+ +++ GRS VAAAA+Y A + S R+ EI
Sbjct: 160 LDRMASALGLPRTVRETAAVVYRKAVDKNLIRGRSIEGVAAAALYAACRQCSVPRTLDEI 219
Query: 268 GDIAGVAEVTIRQSYKLMYPHAS-KLFPQDFVFHTP 302
G+++ V+ + I ++Y+ + S KL P + + P
Sbjct: 220 GEVSRVSRIEIGRTYRFISRELSLKLMPTSPIDYVP 255
>gi|452823058|gb|EME30072.1| transcription initiation factor TFIIB [Galdieria sulphuraria]
Length = 332
Score = 186 bits (471), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 116/301 (38%), Positives = 175/301 (58%), Gaps = 16/301 (5%)
Query: 8 CYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPL 67
C E L+ED+ GD IC CGLV +R++D+GSEWR F N+ SG DPSRVGGP NPL
Sbjct: 25 CKECGSDDLVEDHAQGDVICRNCGLVAAERIVDLGSEWRNFENDDSGTDPSRVGGPNNPL 84
Query: 68 LNGSDLSTMIGPGR-GDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADRINLTKT 126
L S ST+IG G D+ +++ QNR + SDR LL+A I+ A+R L++
Sbjct: 85 LE-SGPSTVIGGGAVSDSRSLNARLNRAQNRHNTSKSDRVLLDAFSLISQYAERSYLSQR 143
Query: 127 IVDRANNLFKQVHD----------GKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAV 176
+VDRA LFK D + LK ++ +A L+ A + EGVPRTFKE+ ++
Sbjct: 144 VVDRAQELFKLYFDHLTLNPQGGRTRYLKEHETVSVVAASLHWASQIEGVPRTFKEMSSL 203
Query: 177 SKISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELD 236
+++ KK + + + ++L+ + +T DF+ RFC L LP+ A I + ++D
Sbjct: 204 TQVPKKTLSDTYLKMKQSLKLNQLNKSTEDFIGRFCFYLRLPHFFISKALQIVQVCRDVD 263
Query: 237 IVPGRSPISVAAAAIYMASQASSDKRSQK----EIGDIAGVAEVTIRQSYKLMYPHASKL 292
V GRS +++AAAAIY A + D+ +K ++ ++GV VTI ++K+M PH+ K+
Sbjct: 264 GVYGRSYVTIAAAAIYTACEKFGDEELKKMVRLQLPKVSGVEIVTIVNTFKIMKPHSDKI 323
Query: 293 F 293
Sbjct: 324 L 324
>gi|154151850|ref|YP_001405468.1| transcription initiation factor IIB [Methanoregula boonei 6A8]
gi|189029854|sp|A7IAR4.1|TF2B_METB6 RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|154000402|gb|ABS56825.1| Transcription factor TFIIB, cyclin-related [Methanoregula boonei
6A8]
Length = 334
Score = 186 bits (471), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 111/292 (38%), Positives = 168/292 (57%), Gaps = 11/292 (3%)
Query: 2 NINKVCCYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVG 61
N + C E L+ DY + +C CGLV+ D ID G EWR F +++ + SRVG
Sbjct: 32 NHTETVCPECGGRQLVHDYERAELVCQSCGLVIDDDFIDRGPEWRAFDHDQR-MKRSRVG 90
Query: 62 GPENPLLNGSDLSTMI------GPGRGDASFDG---FGMSKYQNR-RTMNSSDRALLNAI 111
P ++ LSTMI GR +S + + + K+Q R R N+++R L A+
Sbjct: 91 APMTFTIHDKGLSTMIDWRNRDSYGRAISSKNRAQLYRLRKWQRRIRVSNATERNLAFAL 150
Query: 112 REINSMADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFK 171
E++ MA + L + + + A +++ D ++GRS + +A+A LY ACRQ VPRT
Sbjct: 151 SELDRMASALGLPRNVRETAAVVYRDAVDKNLIRGRSIEGVAAAALYAACRQCSVPRTLD 210
Query: 172 EICAVSKISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARK 231
EI VS++S+KEIGR ++ I + L + + D++ RFCS L+L VQ A I R+
Sbjct: 211 EIAEVSRVSRKEIGRTYRFISRELGLKLLPTSPIDYVPRFCSGLTLKGEVQSRAVEILRQ 270
Query: 232 AVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
A E ++ GR P VAAAAIY++S ++R+Q+E+ ++AGV EVTIR YK
Sbjct: 271 AGERELTSGRGPTGVAAAAIYISSILGGERRTQREVAEVAGVTEVTIRNRYK 322
Score = 38.5 bits (88), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 52/96 (54%), Gaps = 1/96 (1%)
Query: 208 MSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEI 267
+ R S L LP V++ A + R AV+ +++ GRS VAAAA+Y A + S R+ EI
Sbjct: 153 LDRMASALGLPRNVRETAAVVYRDAVDKNLIRGRSIEGVAAAALYAACRQCSVPRTLDEI 212
Query: 268 GDIAGVAEVTIRQSYKLMYPHAS-KLFPQDFVFHTP 302
+++ V+ I ++Y+ + KL P + + P
Sbjct: 213 AEVSRVSRKEIGRTYRFISRELGLKLLPTSPIDYVP 248
>gi|288931755|ref|YP_003435815.1| transcription factor TFIIB cyclin-related protein [Ferroglobus
placidus DSM 10642]
gi|288894003|gb|ADC65540.1| Transcription factor TFIIB cyclin-related protein [Ferroglobus
placidus DSM 10642]
Length = 328
Score = 186 bits (471), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 110/286 (38%), Positives = 165/286 (57%), Gaps = 11/286 (3%)
Query: 8 CYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPL 67
C E LI D++ G+ IC +CGLV+ D ID G EWR F +E+ SRVG P
Sbjct: 32 CPECGSPRLIRDFKRGEFICQDCGLVIEDTYIDSGPEWRAFDSEQRE-KRSRVGAPITYT 90
Query: 68 LNGSDLSTMIGPGRGDASFDG---------FGMSKYQNR-RTMNSSDRALLNAIREINSM 117
++ LST+I D F + K+Q R R N+++R L A+ E++ M
Sbjct: 91 IHDKGLSTIIDWSNKDYYGKAISVRNRAQLFRLRKWQRRIRISNATERNLAFALSELDRM 150
Query: 118 ADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVS 177
A + L K++ + A ++++ + ++GRS + + +A LY ACRQ GVPRT EI S
Sbjct: 151 ASALGLPKSVRETAAVIYRKAVEKNLIRGRSIEGVVAAALYAACRQAGVPRTLDEIATYS 210
Query: 178 KISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDI 237
++ +KEIGR ++ I + L + + D++ RFC+ L L VQK A I +KA E ++
Sbjct: 211 RVDRKEIGRTYRFIARELGLKLLPTSPADYVPRFCAALGLSGEVQKKAIEIIKKAEEKEL 270
Query: 238 VPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
GR P VAAAAIY+AS + ++R+Q+E+ ++AGV EVTIR YK
Sbjct: 271 TSGRGPTGVAAAAIYIASILTGERRTQREVAEVAGVTEVTIRNRYK 316
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 48/96 (50%), Gaps = 1/96 (1%)
Query: 208 MSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEI 267
+ R S L LP V++ A I RKAVE +++ GRS V AAA+Y A + + R+ EI
Sbjct: 147 LDRMASALGLPKSVRETAAVIYRKAVEKNLIRGRSIEGVVAAALYAACRQAGVPRTLDEI 206
Query: 268 GDIAGVAEVTIRQSYKLMYPHAS-KLFPQDFVFHTP 302
+ V I ++Y+ + KL P + P
Sbjct: 207 ATYSRVDRKEIGRTYRFIARELGLKLLPTSPADYVP 242
>gi|401623146|gb|EJS41253.1| sua7p [Saccharomyces arboricola H-6]
Length = 345
Score = 185 bits (470), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 111/311 (35%), Positives = 170/311 (54%), Gaps = 17/311 (5%)
Query: 1 MNINKVC--CYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNE-KSGVDP 57
+NI C C +P ++E + GD +C+ CGLV+ D+++D SEWRTFSN+ +G DP
Sbjct: 18 LNIVLTCPECKVYP-PKIVERFSEGDVVCALCGLVLSDKLVDTRSEWRTFSNDDHNGDDP 76
Query: 58 SRVGGPENPLLNGSDLSTMIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSM 117
SRVG NPLL+G++LST IG G ++K Q + M+ D + A +I +
Sbjct: 77 SRVGEASNPLLDGNNLSTRIGKGETTDMRFTKELNKAQGKNVMDKKDNEVQAAFAKITML 136
Query: 118 ADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVS 177
D L K + D A +K HD K LKG+S ++I +A + I CR+ V RTFKEI ++
Sbjct: 137 CDAAELPKIVKDCAKEAYKLCHDEKALKGKSMESIMAASILIGCRRAEVARTFKEIQSLI 196
Query: 178 KISKKEIGRCFKL---ILKA------LETSVDLITTGD---FMSRFCSNLSLPNMVQKAA 225
+ KE G+ + IL+ L+ D ++ ++ RFCS+L LP V +A
Sbjct: 197 HVKTKEFGKTLNIMKNILRGKSEDGFLKIDTDNMSGAQNLTYIPRFCSHLGLPMQVTTSA 256
Query: 226 THIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLM 285
+ A+K E+ + G+SPI++A +IY+ + ++G V E TI+ YK++
Sbjct: 257 EYTAKKCKEIKEIAGKSPITIAVVSIYLNVLLFKIPITAAKVGQTLQVTEGTIKSGYKIL 316
Query: 286 YPHASKLF-PQ 295
Y H KL PQ
Sbjct: 317 YEHREKLVDPQ 327
>gi|413946339|gb|AFW78988.1| hypothetical protein ZEAMMB73_349781 [Zea mays]
Length = 311
Score = 185 bits (469), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 111/300 (37%), Positives = 165/300 (55%), Gaps = 19/300 (6%)
Query: 11 HPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVD--PSRVGGPENPLL 68
H ++ D+ GD IC+EC LV+ ID GSEWR F+++ G D PSRVGG +P L
Sbjct: 13 HRTTEVVLDHATGDTICTECALVLEAHYIDEGSEWRNFADDGGGEDRDPSRVGGSSDPFL 72
Query: 69 NGSDLSTMI---GPGRGDASFDGFGMSKYQNRRTMNSS-DRALLNAIREINSMADRINLT 124
L T I GP + G + + + + ++ L+ I MADR+ L
Sbjct: 73 ANMPLVTQIAYAGPQKAQGE-GGHALPRLHVSASGGAGGEQTLVEGFHAIADMADRLGLV 131
Query: 125 KTIVDRANNLFKQVHDGKNLKGRSN--DAIASACLYIACRQEGVPRTFKEICAVSK---I 179
TI DRA +++K++ + + GR DA +ACLY+ACR EG PRT+KE+ V+
Sbjct: 132 ATIRDRAKDVYKRLGEARACPGRGKKRDAFYAACLYVACRNEGKPRTYKELATVTSDGAA 191
Query: 180 SKKEIGRCFKLILKALETS------VDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAV 233
+KKEIG+ LI K L + ++ D+M RFCS L + N +AA AR+ +
Sbjct: 192 AKKEIGKMTMLIKKVLGEEAGQVMDIGVVRPSDYMRRFCSRLGMGNREMRAAQEAARR-L 250
Query: 234 ELDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKLF 293
E + R+P S+AAA YM Q + ++ +++ GVAEVTI++++K + PHA KLF
Sbjct: 251 ENGLDVRRNPESIAAAISYMVVQRTGAGKTVRDVSMATGVAEVTIKEAHKDLTPHAEKLF 310
>gi|444317851|ref|XP_004179583.1| hypothetical protein TBLA_0C02540 [Tetrapisispora blattae CBS 6284]
gi|387512624|emb|CCH60064.1| hypothetical protein TBLA_0C02540 [Tetrapisispora blattae CBS 6284]
Length = 357
Score = 185 bits (469), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 107/307 (34%), Positives = 171/307 (55%), Gaps = 16/307 (5%)
Query: 1 MNINKVC--CYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNE-KSGVDP 57
+N+ C C +P +IE + GD +C+ CGLV+ D++ID SEWRTFSN+ ++G DP
Sbjct: 22 LNVVLTCPECKVYP-PKIIERFSEGDVVCALCGLVLSDKLIDTRSEWRTFSNDDQNGDDP 80
Query: 58 SRVGGPENPLLNGSDLSTMIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSM 117
SRVG NPLL+G++LST IG G S +++ Q + ++ D + +A +I +
Sbjct: 81 SRVGEASNPLLDGNNLSTRIGQGETTDSRFTKELNRAQGKNIVDKKDNEVQSAFAKITML 140
Query: 118 ADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVS 177
D L K + D A +K +D K+LKG+S +++ +A + I CR+ V RTFKEI ++
Sbjct: 141 CDAAELPKIVKDCAKEAYKLCNDEKSLKGKSTESVMAASILIGCRRAQVARTFKEIQSII 200
Query: 178 KISKKEIGRCFKLILKAL-ETSVDLITTGD-----------FMSRFCSNLSLPNMVQKAA 225
+ KE G+ ++ L E S D + D ++ RFCS+L LP V +A
Sbjct: 201 HVKTKEFGKTLGIMKGILREKSADGVIKIDTDNMSGAQNVTYIPRFCSHLGLPMQVTTSA 260
Query: 226 THIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLM 285
+ A+K E+ + G+SPI++A +IY+ + ++ I V E TI+ YK++
Sbjct: 261 EYTAKKCKEIGDIAGKSPITIAVVSIYLNILLFKIPVTAAKVAQILQVTEGTIKSGYKIL 320
Query: 286 YPHASKL 292
Y H K+
Sbjct: 321 YEHREKV 327
>gi|254577986|ref|XP_002494979.1| ZYRO0B00528p [Zygosaccharomyces rouxii]
gi|238937869|emb|CAR26046.1| ZYRO0B00528p [Zygosaccharomyces rouxii]
Length = 357
Score = 185 bits (469), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 108/311 (34%), Positives = 170/311 (54%), Gaps = 17/311 (5%)
Query: 1 MNINKVC--CYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNE-KSGVDP 57
+NI C C +P ++E + GD +C+ CGLV+ DR++D SEWRTFSN+ ++G DP
Sbjct: 20 LNIVLTCPECKVYP-PKIVERFSEGDVVCALCGLVLSDRLVDTRSEWRTFSNDDQNGDDP 78
Query: 58 SRVGGPENPLLNGSDLSTMIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSM 117
SRVG NPLL+G+ LST IG G + +++ Q + M+ D L ++ +
Sbjct: 79 SRVGEASNPLLDGNSLSTRIGSAEGSDARTTRDLNRAQGKNVMDKKDNELQAVFAKLTML 138
Query: 118 ADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVS 177
D L K + D A +K +D K LKG+S ++I ++ + I CR+ V RT +EI ++
Sbjct: 139 CDAAELPKIVKDCAKEAYKLCYDEKALKGKSTESIMASAILIGCRRAEVARTLREIQSII 198
Query: 178 KISKKEIGRCFKLILKAL-ETSVDLITTGD-----------FMSRFCSNLSLPNMVQKAA 225
+ KE G+ ++ L E S D I D ++ RFCS+L LP V A+
Sbjct: 199 HVKTKEFGKSLGIMKGILREKSSDGIIKIDTNNMSGAQNLPYIPRFCSHLGLPMQVTTAS 258
Query: 226 THIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLM 285
+ ARK E++ + G+SPI++A +IY+ S ++G I V E TI+ YK++
Sbjct: 259 EYTARKCKEIEEIAGKSPITIAVVSIYLNILLFKLPVSAAKVGQILQVTEGTIKSGYKIL 318
Query: 286 YPHASKLF-PQ 295
Y + ++ PQ
Sbjct: 319 YEYKERVVDPQ 329
>gi|444707176|gb|ELW48465.1| Transcription initiation factor IIB [Tupaia chinensis]
Length = 218
Score = 185 bits (469), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 88/114 (77%), Positives = 98/114 (85%)
Query: 196 ETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMAS 255
+TSVDLITTGDFMS FCSNL LP VQ ATHIA KAVELD+VPGRSPIS A AAIYMAS
Sbjct: 105 KTSVDLITTGDFMSTFCSNLCLPKQVQMTATHIAHKAVELDLVPGRSPISTAEAAIYMAS 164
Query: 256 QASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKLFPQDFVFHTPIHELPQL 309
QAS++KR+QKEIGDIAGVA+VTIRQSY+L+YP A LFP DF F TP+ +LPQL
Sbjct: 165 QASAEKRTQKEIGDIAGVADVTIRQSYRLIYPRAPYLFPTDFTFDTPVDKLPQL 218
>gi|384244800|gb|EIE18298.1| cyclin-like protein [Coccomyxa subellipsoidea C-169]
Length = 337
Score = 184 bits (468), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 120/323 (37%), Positives = 174/323 (53%), Gaps = 27/323 (8%)
Query: 8 CYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGV-DPSRVGGPENP 66
C + + +ED+ GD +C+ CGLV VID SEWR F ++ DPSRVGGP N
Sbjct: 12 CADCGSSDFVEDHAQGDLVCTGCGLVAESHVIDESSEWRNFGDKDGDTTDPSRVGGPTNH 71
Query: 67 LLNGSDLSTMIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADRINLTKT 126
LL + LST+IG AS + + ++ D+ALL A I+ + + + L +
Sbjct: 72 LLT-NGLSTVIGAPTKGASNATLTRNLQRAHAQGSNPDQALLRAFGHISRLCEALGLNRA 130
Query: 127 IVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAV-SKISKKEIG 185
DR N LFK + + ++G+ A+ +A IACRQ G PRTFKE+ AV + S K+I
Sbjct: 131 CKDRGNELFKNTWEKRGIRGKGIAAVCAAVTLIACRQVGFPRTFKEMEAVIADGSIKDIK 190
Query: 186 RCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQK---------------AATHIAR 230
RC++LI K L+ ++++T DF+ RFCS L L K AA +
Sbjct: 191 RCYRLITKQLDEKMEMVTPADFVRRFCSRLGLTQRDMKAAEEMAEAAVPRNPNAAGAVDV 250
Query: 231 KAVELDIVPGRSPISVAAAAIY---MASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYP 287
+A D G+SP+SVAAA IY + QAS + + +I AGVAE T+R +YK +Y
Sbjct: 251 RARSWD---GKSPVSVAAAVIYTICLLPQASK-QVTPGDIAQAAGVAEGTVRNTYKDLYT 306
Query: 288 HASKLFPQDFV--FHTPIHELPQ 308
A+ L P F+ + + +LPQ
Sbjct: 307 DAATLIPAWFLDEQRSDLRKLPQ 329
>gi|355572234|ref|ZP_09043416.1| Transcription initiation factor IIB [Methanolinea tarda NOBI-1]
gi|354824950|gb|EHF09189.1| Transcription initiation factor IIB [Methanolinea tarda NOBI-1]
Length = 338
Score = 184 bits (467), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 110/290 (37%), Positives = 167/290 (57%), Gaps = 11/290 (3%)
Query: 4 NKVCCYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGP 63
+ C E L+ DY + +C CGLV+ D ID G EWR F +++ + SRVG P
Sbjct: 38 TETVCPECGSRQLVHDYERAELVCQNCGLVIDDDFIDRGPEWRAFDHDQR-MKRSRVGAP 96
Query: 64 ENPLLNGSDLSTMI------GPGRGDASFDG---FGMSKYQNR-RTMNSSDRALLNAIRE 113
++ LSTMI GR +S + + + K+Q R R N+++R L A+ E
Sbjct: 97 MTFTIHDKGLSTMIDWRNRDSYGRAISSKNRAQLYRLRKWQRRIRVSNATERNLAFALSE 156
Query: 114 INSMADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEI 173
++ MA + L + + + A +++ D ++GRS + +A+A LY ACRQ VPRT EI
Sbjct: 157 LDRMASALGLPRNVRETAAVVYRDAVDKNLIRGRSIEGVAAAALYAACRQCSVPRTLDEI 216
Query: 174 CAVSKISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAV 233
VS++S+KEIGR ++ I + L + + D++ RFCS L+L VQ A I R+A
Sbjct: 217 AEVSRVSRKEIGRTYRFISRELGLKLLPTSPIDYVPRFCSGLNLKGEVQSRAVEILRQAG 276
Query: 234 ELDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
E ++ GR P VAAAAIY++S ++R+Q+E+ ++AGV EVTIR YK
Sbjct: 277 ERELTSGRGPTGVAAAAIYISSILGGERRTQREVAEVAGVTEVTIRNRYK 326
Score = 38.5 bits (88), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 52/96 (54%), Gaps = 1/96 (1%)
Query: 208 MSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEI 267
+ R S L LP V++ A + R AV+ +++ GRS VAAAA+Y A + S R+ EI
Sbjct: 157 LDRMASALGLPRNVRETAAVVYRDAVDKNLIRGRSIEGVAAAALYAACRQCSVPRTLDEI 216
Query: 268 GDIAGVAEVTIRQSYKLMYPHAS-KLFPQDFVFHTP 302
+++ V+ I ++Y+ + KL P + + P
Sbjct: 217 AEVSRVSRKEIGRTYRFISRELGLKLLPTSPIDYVP 252
>gi|257076875|ref|ZP_05571236.1| transcription initiation factor IIB [Ferroplasma acidarmanus fer1]
Length = 311
Score = 184 bits (466), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 99/288 (34%), Positives = 164/288 (56%), Gaps = 15/288 (5%)
Query: 8 CYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPL 67
C E + L+ DY G+ +CS CGLV+ D ID G EWR F +E+S +R G P
Sbjct: 15 CPECGSSQLVRDYERGELVCSNCGLVIDDSYIDEGPEWRAFDSEQSE-SRARTGSPMTYT 73
Query: 68 LNGSDLSTMIG-----------PGRGDASFDGFGMSKYQNR-RTMNSSDRALLNAIREIN 115
++ LST I P R A + + K+Q R + N+++R L A++E+
Sbjct: 74 IHDKGLSTDISWKNKDSYGKSIPTRNRAQL--YRLRKWQKRIKVSNAAERNLSQALQELE 131
Query: 116 SMADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICA 175
MA +++ + + + ++++ ++GRS + + + +Y ACR VPRT EI +
Sbjct: 132 RMASNLSIPNDVRETSAVIYRKAVKQNMIRGRSIEGVVAGSIYAACRITNVPRTLDEIAS 191
Query: 176 VSKISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVEL 235
V+++ KKEIGR ++++ + L+ ++ D+++RFCS L L +K A I + A++
Sbjct: 192 VTRVKKKEIGRTYRIMARYLKLNILPSKPDDYVNRFCSKLRLSMEARKRAEEILKMAIDN 251
Query: 236 DIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
D+ G+ P VAAAAIY+AS + ++R+Q+ I ++AGV EVTIR YK
Sbjct: 252 DLTSGKGPTGVAAAAIYIASLITGERRTQRAIAEVAGVTEVTIRNRYK 299
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 48/78 (61%)
Query: 208 MSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEI 267
+ R SNLS+PN V++ + I RKAV+ +++ GRS V A +IY A + ++ R+ EI
Sbjct: 130 LERMASNLSIPNDVRETSAVIYRKAVKQNMIRGRSIEGVVAGSIYAACRITNVPRTLDEI 189
Query: 268 GDIAGVAEVTIRQSYKLM 285
+ V + I ++Y++M
Sbjct: 190 ASVTRVKKKEIGRTYRIM 207
>gi|268324098|emb|CBH37686.1| transcription initiation factor IIB [uncultured archaeon]
gi|268326415|emb|CBH40003.1| transcription initiation factor IIB [uncultured archaeon]
Length = 319
Score = 184 bits (466), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 103/279 (36%), Positives = 164/279 (58%), Gaps = 8/279 (2%)
Query: 8 CYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPL 67
C E L+ DY + C++CGLV+ + ++D+G EWR F +E++ +RVG P
Sbjct: 34 CPECGSKNLVRDYGKAELFCADCGLVIAENIVDLGPEWRAFDSEQAS-KRARVGAPMTYR 92
Query: 68 LNGSDLSTMI---GPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADRINLT 124
++ LST++ PG+G + Q N+++R+ + A+ EI+ MA + L
Sbjct: 93 IHDKGLSTLVTWSSPGQGQYKLK----KRQQWTHIANTTERSFIFALSEIDRMASALRLP 148
Query: 125 KTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEI 184
I + A+ L+++ ++GRS + I SA LY++CRQ GVPRT +E+ VS++ +KEI
Sbjct: 149 INIREAASMLYRKAMKKHLIRGRSIEGITSAILYVSCRQYGVPRTLEEVRDVSRVGQKEI 208
Query: 185 GRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPI 244
R ++ +L+ L+ V + DF+ RFCS L L ++ A I +KA E ++ GR PI
Sbjct: 209 SRAYRFLLRELDLKVTPASPVDFVPRFCSQLDLSGEIRSKAVEIIKKASEAELTNGRGPI 268
Query: 245 SVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
+ AAAIY+A+ S + R+QKE+ D+ GV EVTIR YK
Sbjct: 269 GIVAAAIYIAAILSGEHRTQKEVSDVTGVTEVTIRNRYK 307
Score = 44.3 bits (103), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 52/95 (54%), Gaps = 4/95 (4%)
Query: 208 MSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEI 267
+ R S L LP +++AA+ + RKA++ ++ GRS + +A +Y++ + R+ +E+
Sbjct: 138 IDRMASALRLPINIREAASMLYRKAMKKHLIRGRSIEGITSAILYVSCRQYGVPRTLEEV 197
Query: 268 GDIAGVAEVTIRQSYKLMYPH----ASKLFPQDFV 298
D++ V + I ++Y+ + + P DFV
Sbjct: 198 RDVSRVGQKEISRAYRFLLRELDLKVTPASPVDFV 232
>gi|241958734|ref|XP_002422086.1| general transcription facto TFIIB, putative; transcription
initiation factor IIB, putative [Candida dubliniensis
CD36]
gi|223645431|emb|CAX40087.1| general transcription facto TFIIB, putative [Candida dubliniensis
CD36]
Length = 346
Score = 184 bits (466), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 107/314 (34%), Positives = 181/314 (57%), Gaps = 22/314 (7%)
Query: 1 MNINKVC--CYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNE-KSGVDP 57
+N+ +C C + P L+E + GD IC +CGLV+ DR++D SEWRTF N+ K+ DP
Sbjct: 16 LNVTLICPDCKQFP-PDLVERFSEGDIICGQCGLVLSDRIVDTRSEWRTFQNDDKNTDDP 74
Query: 58 SRVGGPENPLLNGSDLSTMIGPG-RGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINS 116
SRVG N L + DL+TMI ++S ++K Q + ++ + AL A ++I+
Sbjct: 75 SRVGDASNSLYDNEDLTTMISYAPNSNSSGSKNNLNKIQQKSLVDKKNYALQTAYQKISE 134
Query: 117 MADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAV 176
+ + L K+ D A +L+K V + + LKG++ D+I +A + + CR+ VPRT +EI A+
Sbjct: 135 LCNGYQLPKSASDAAKHLYKAVREDRLLKGKTQDSIMAAAILLGCRRADVPRTLEEIRAL 194
Query: 177 SKISKKEIGRCFKLILKALE----------------TSVDLITTGDFMSRFCSNLSLPNM 220
+ + K+I + LI K + +S+ + D + RFCS+L L
Sbjct: 195 TNVPTKQIAKVTGLIKKIIRSHLNNEDASTSIVDETSSLTTHSAEDLIRRFCSHLGLSLT 254
Query: 221 VQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSD-KRSQKEIGDIAGVAEVTIR 279
+ A+ ++ARK +L ++ GRSP ++AA +I++A+++ D K +Q++I D GV+ TI+
Sbjct: 255 ITSASEYVARKCHDLGVLAGRSPTTIAATSIFLAAKSLGDTKLTQQQIRDKTGVSIGTIK 314
Query: 280 QSYKLMYPHASKLF 293
SYK++ +A L
Sbjct: 315 NSYKILQENAKDLI 328
>gi|333986561|ref|YP_004519168.1| Transcription initiation factor IIB [Methanobacterium sp. SWAN-1]
gi|333824705|gb|AEG17367.1| Transcription initiation factor IIB [Methanobacterium sp. SWAN-1]
Length = 340
Score = 184 bits (466), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 100/288 (34%), Positives = 164/288 (56%), Gaps = 15/288 (5%)
Query: 8 CYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPL 67
C E LI D+ G+ +C CGLV+ D ++D+G EWR F +E+ +RVG P
Sbjct: 44 CPECGSKKLINDHERGEVVCGACGLVIDDNLVDMGPEWRAFDHEQRD-KRTRVGAPITYT 102
Query: 68 LNGSDLSTMIG-----------PGRGDASFDGFGMSKYQNR-RTMNSSDRALLNAIREIN 115
++ LSTMI P R A + + + K+Q + R +++R L A+ E++
Sbjct: 103 IHDKGLSTMIDWRNKDIYGRDIPARNRAQW--YRLRKWQRKIRISGATERNLAFALSELD 160
Query: 116 SMADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICA 175
+ R+ L +++ + A+ +++ + K ++GRS + + +A LY ACR+ VPRT EI
Sbjct: 161 RDSSRLGLPRSVREAASVVYRNAVENKLIRGRSIEGVVAASLYAACRRCNVPRTLDEIAE 220
Query: 176 VSKISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVEL 235
VS+++KKE+GR ++ + + L + + D++ RF S L L VQ A I +A+
Sbjct: 221 VSRVTKKEVGRTYRFLTRELNIKLPPTSPVDYVPRFASELGLSGEVQSKAIDIIEQAMAK 280
Query: 236 DIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
+ GR P VAAAA+Y+AS ++++Q+++ DIAGV EVTIR YK
Sbjct: 281 GLTSGRGPTGVAAAALYIASVLLGERKTQRDVADIAGVTEVTIRNRYK 328
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 53/96 (55%), Gaps = 1/96 (1%)
Query: 208 MSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEI 267
+ R S L LP V++AA+ + R AVE ++ GRS V AA++Y A + + R+ EI
Sbjct: 159 LDRDSSRLGLPRSVREAASVVYRNAVENKLIRGRSIEGVVAASLYAACRRCNVPRTLDEI 218
Query: 268 GDIAGVAEVTIRQSYKLMYPHAS-KLFPQDFVFHTP 302
+++ V + + ++Y+ + + KL P V + P
Sbjct: 219 AEVSRVTKKEVGRTYRFLTRELNIKLPPTSPVDYVP 254
>gi|48478410|ref|YP_024116.1| transcription initiation factor IIB [Picrophilus torridus DSM 9790]
gi|48431058|gb|AAT43923.1| transcription initiation factor IIB [Picrophilus torridus DSM 9790]
Length = 310
Score = 183 bits (465), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 100/288 (34%), Positives = 163/288 (56%), Gaps = 15/288 (5%)
Query: 8 CYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPL 67
C E + L+ DY G+ ICS CGLV+ D ID G EWR F +E++ +R G P
Sbjct: 14 CPECGSSQLVRDYERGELICSNCGLVIDDSYIDEGPEWRAFDSEQNE-SRARTGSPMTYT 72
Query: 68 LNGSDLSTMIG-----------PGRGDASFDGFGMSKYQNR-RTMNSSDRALLNAIREIN 115
++ LST I P R A + + K+Q R + N+++R L A++E+
Sbjct: 73 IHDKGLSTDISWKNKDSYGKSIPTRNRAQL--YRLRKWQKRIKVSNAAERNLSQALQELE 130
Query: 116 SMADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICA 175
M +++ + + A ++++ ++GRS + + + +Y ACR VPRT EI +
Sbjct: 131 RMTSNLSIPNDVRETAAVIYRKAVKQNMIRGRSIEGVVAGSIYAACRITNVPRTLDEIAS 190
Query: 176 VSKISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVEL 235
V+++ KKEIGR ++++ + L+ ++ D+++RFCS L L +K A I + AV+
Sbjct: 191 VTRVKKKEIGRTYRIMARYLKLNIMPSKPEDYVNRFCSKLRLSMEARKRAEEILKMAVDN 250
Query: 236 DIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
D+ G+ P VAAAAIY+AS + ++R+Q+ I ++AGV EVTIR YK
Sbjct: 251 DLTSGKGPTGVAAAAIYIASLITGERRTQRAIAEVAGVTEVTIRNRYK 298
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 56/96 (58%), Gaps = 6/96 (6%)
Query: 208 MSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEI 267
+ R SNLS+PN V++ A I RKAV+ +++ GRS V A +IY A + ++ R+ EI
Sbjct: 129 LERMTSNLSIPNDVRETAAVIYRKAVKQNMIRGRSIEGVVAGSIYAACRITNVPRTLDEI 188
Query: 268 GDIAGVAEVTIRQSYKLMYPHASKL-----FPQDFV 298
+ V + I ++Y++M + KL P+D+V
Sbjct: 189 ASVTRVKKKEIGRTYRIMARYL-KLNIMPSKPEDYV 223
>gi|68492125|ref|XP_710164.1| likely transcription factor TFIIB [Candida albicans SC5314]
gi|46431308|gb|EAK90894.1| likely transcription factor TFIIB [Candida albicans SC5314]
gi|238879990|gb|EEQ43628.1| transcription initiation factor IIB [Candida albicans WO-1]
Length = 346
Score = 183 bits (465), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 107/314 (34%), Positives = 180/314 (57%), Gaps = 22/314 (7%)
Query: 1 MNINKVC--CYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNE-KSGVDP 57
+N+ +C C + P LIE + GD IC +CGLV+ DR++D SEWRTF N+ K+ DP
Sbjct: 16 LNVTLICPDCKQFP-PDLIERFSEGDIICGQCGLVLSDRIVDTRSEWRTFQNDDKNTDDP 74
Query: 58 SRVGGPENPLLNGSDLSTMIGPG-RGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINS 116
SRVG N L + DL+TMI ++ ++K Q + ++ + AL A ++I+
Sbjct: 75 SRVGDASNSLYDTEDLTTMISYAPNSNSGSSKNSLNKIQQKSLVDKKNYALQTAYQKISE 134
Query: 117 MADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAV 176
+ + L K+ D A +L+K V + + LKG++ D+I +A + + CR+ VPRT +EI A+
Sbjct: 135 LCNGYQLPKSASDAAKHLYKAVREDRLLKGKTQDSIMAATILLGCRRADVPRTLEEIRAL 194
Query: 177 SKISKKEIGRCFKLILKALE----------------TSVDLITTGDFMSRFCSNLSLPNM 220
+ + K+I + LI K + +S+ + D + RFCS+L L
Sbjct: 195 TNVPTKQIAKVTGLIKKIIRSHLNNDDASTSIVDETSSLTTHSAEDLIRRFCSHLGLSLA 254
Query: 221 VQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSD-KRSQKEIGDIAGVAEVTIR 279
+ A+ ++ARK +L ++ GRSP ++AA +I++A+++ D K +Q++I D GV+ TI+
Sbjct: 255 ITSASEYVARKCHDLGVLAGRSPTTIAATSIFLAAKSLGDTKLTQQQIRDKTGVSIGTIK 314
Query: 280 QSYKLMYPHASKLF 293
SYK++ +A L
Sbjct: 315 NSYKILQENAKDLI 328
>gi|296109616|ref|YP_003616565.1| transcription factor TFIIB cyclin-related protein
[methanocaldococcus infernus ME]
gi|295434430|gb|ADG13601.1| Transcription factor TFIIB cyclin-related protein
[Methanocaldococcus infernus ME]
Length = 320
Score = 183 bits (465), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 98/273 (35%), Positives = 157/273 (57%), Gaps = 11/273 (4%)
Query: 26 ICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLSTMIGPGRGDA- 84
+C++CG V+ +++ D G EWR F +E+ V RVG P ++ LST+I DA
Sbjct: 42 VCAKCGCVIKEQIFDAGPEWRAFDHEQK-VKRCRVGAPMTYTIHDKGLSTVIDWRNKDAY 100
Query: 85 --------SFDGFGMSKYQNR-RTMNSSDRALLNAIREINSMADRINLTKTIVDRANNLF 135
+ + + K+Q R R ++S+R L A+ E++ +A ++ L K + + A+ L+
Sbjct: 101 GKDISANKRAELYRLRKWQRRIRVSDASERNLAFALSELDRIASKLGLPKHVKEHASLLY 160
Query: 136 KQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGRCFKLILKAL 195
++ ++GRS + + +A +Y ACR+ VPRT EI VS++ KKEIGR ++ + + L
Sbjct: 161 REAVRKGLIRGRSIEGVVAATIYAACRKYRVPRTLDEIAEVSRVDKKEIGRTYRFLAREL 220
Query: 196 ETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMAS 255
+ + D++ RF S L LP V+ A I +KA E + GR P VAAAAIY+AS
Sbjct: 221 KIKLAPTNPIDYVPRFASELGLPGEVESKAIQILKKAAEKGLTSGRGPTGVAAAAIYIAS 280
Query: 256 QASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPH 288
+R+Q+E+ ++AGV EVTIR YK + H
Sbjct: 281 VLLGHRRTQREVAEVAGVTEVTIRNRYKELTEH 313
>gi|194701258|gb|ACF84713.1| unknown [Zea mays]
Length = 198
Score = 183 bits (465), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 98/197 (49%), Positives = 127/197 (64%), Gaps = 9/197 (4%)
Query: 117 MADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAV 176
MADR+ L TI DRAN +FK++ D K+++GR+ DAI +ACLYIACRQE PRT KEIC+V
Sbjct: 1 MADRLGLVATIKDRANEIFKKIEDLKSIRGRNQDAILAACLYIACRQEDRPRTVKEICSV 60
Query: 177 SK-ISKKEIGRCFKLILKALET------SVDLITTGDFMSRFCSNLSLPNMVQKAATHIA 229
+ +KKEIGR + I+K LE + I GDF+ RFCS L + N AA
Sbjct: 61 ANGATKKEIGRAKEFIVKQLEVEMGQSMEMGTIHAGDFLRRFCSTLGMTNQAVNAAKEAV 120
Query: 230 RKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHA 289
+++ ELDI RSPIS+AAA IYM +Q S DK+ K+I GVAE TIR SYK +YP+A
Sbjct: 121 QRSEELDI--RRSPISIAAAVIYMITQLSEDKKPLKDISLATGVAEGTIRNSYKDLYPYA 178
Query: 290 SKLFPQDFVFHTPIHEL 306
S+L P + + L
Sbjct: 179 SRLIPNTYAKEEDLKNL 195
>gi|374630349|ref|ZP_09702734.1| Transcription initiation factor IIB (TFIIB) [Methanoplanus limicola
DSM 2279]
gi|373908462|gb|EHQ36566.1| Transcription initiation factor IIB (TFIIB) [Methanoplanus limicola
DSM 2279]
Length = 335
Score = 183 bits (464), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 109/290 (37%), Positives = 167/290 (57%), Gaps = 11/290 (3%)
Query: 4 NKVCCYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGP 63
K C E L++DY + C CGLV+ + ID G EWR F +++ + SRVG P
Sbjct: 35 TKTVCPECGSRQLVQDYERAELTCQNCGLVLEEEFIDRGPEWRAFDHDQR-MKRSRVGAP 93
Query: 64 ENPLLNGSDLSTMI------GPGRGDASFDG---FGMSKYQNR-RTMNSSDRALLNAIRE 113
++ LSTMI GR +S + + + K+Q R R N+++R L A+ E
Sbjct: 94 MTFTIHDKGLSTMIDWRNRDSYGRAISSKNRAQLYRLRKWQRRIRVSNATERNLAFALSE 153
Query: 114 INSMADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEI 173
++ MA + L + + + A +++ + ++GRS + +A+A LY ACRQ VPRT EI
Sbjct: 154 LDRMASALGLPRNVRETAAVVYRDAVEKNLIRGRSIEGVAAAALYAACRQCNVPRTLDEI 213
Query: 174 CAVSKISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAV 233
VS++S+KEIGR ++ I + L + + D++ RFCS L+L VQ A I R+A
Sbjct: 214 AEVSRVSRKEIGRTYRFISRELGLKLLPTSPIDYVPRFCSGLTLKGEVQSRAVEILRQAG 273
Query: 234 ELDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
E ++ GR P VAAAAIY++S ++R+Q+E+ ++AGV EVTIR YK
Sbjct: 274 EKELTSGRGPTGVAAAAIYISSILGGERRTQREVAEVAGVTEVTIRNRYK 323
Score = 38.5 bits (88), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 52/96 (54%), Gaps = 1/96 (1%)
Query: 208 MSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEI 267
+ R S L LP V++ A + R AVE +++ GRS VAAAA+Y A + + R+ EI
Sbjct: 154 LDRMASALGLPRNVRETAAVVYRDAVEKNLIRGRSIEGVAAAALYAACRQCNVPRTLDEI 213
Query: 268 GDIAGVAEVTIRQSYKLMYPHAS-KLFPQDFVFHTP 302
+++ V+ I ++Y+ + KL P + + P
Sbjct: 214 AEVSRVSRKEIGRTYRFISRELGLKLLPTSPIDYVP 249
>gi|284161172|ref|YP_003399795.1| transcription factor TFIIB cyclin-related protein [Archaeoglobus
profundus DSM 5631]
gi|284011169|gb|ADB57122.1| Transcription factor TFIIB cyclin-related protein [Archaeoglobus
profundus DSM 5631]
Length = 329
Score = 183 bits (464), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 106/286 (37%), Positives = 164/286 (57%), Gaps = 11/286 (3%)
Query: 8 CYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPL 67
C E ++ DY+ G+ IC +CG V+ +R ID G EWR F +E+ SRVG P
Sbjct: 33 CPECGSPRIVRDYKRGELICQDCGYVIEERYIDAGPEWRAFDSEQRE-KRSRVGAPITYT 91
Query: 68 LNGSDLSTMIGPGRGDASFDG---------FGMSKYQNR-RTMNSSDRALLNAIREINSM 117
++ L+T+I D F + K+Q R R N+++R L A+ E++ M
Sbjct: 92 IHDKGLTTIIDWNNKDYYGKAISVRTRAQLFRLRKWQRRIRISNATERNLAFALSELDRM 151
Query: 118 ADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVS 177
A + L K++ + A ++++ + ++GRS + + +A LY ACRQ GVPRT EI S
Sbjct: 152 ASALGLPKSVRETAAVIYRKAIEKNLIRGRSIEGVVAAALYAACRQAGVPRTLDEIAQYS 211
Query: 178 KISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDI 237
++ +KEIGR ++ I + L + + D++ RFC+ L L VQ+ A I +KA E ++
Sbjct: 212 RVDRKEIGRTYRFIARELGLKLMPTSPADYVPRFCAALGLSGEVQRKAIEIIKKAEEREL 271
Query: 238 VPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
GR P VAAAAIY+AS ++R+Q+E+ ++AGV EVTIR YK
Sbjct: 272 TSGRGPTGVAAAAIYIASILCGERRTQREVAEVAGVTEVTIRNRYK 317
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 48/96 (50%), Gaps = 1/96 (1%)
Query: 208 MSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEI 267
+ R S L LP V++ A I RKA+E +++ GRS V AAA+Y A + + R+ EI
Sbjct: 148 LDRMASALGLPKSVRETAAVIYRKAIEKNLIRGRSIEGVVAAALYAACRQAGVPRTLDEI 207
Query: 268 GDIAGVAEVTIRQSYKLMYPHAS-KLFPQDFVFHTP 302
+ V I ++Y+ + KL P + P
Sbjct: 208 AQYSRVDRKEIGRTYRFIARELGLKLMPTSPADYVP 243
>gi|126178423|ref|YP_001046388.1| transcription initiation factor IIB [Methanoculleus marisnigri JR1]
gi|189029857|sp|A3CSQ6.1|TF2B_METMJ RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|125861217|gb|ABN56406.1| Transcription initiation factor IIB (TFIIB) [Methanoculleus
marisnigri JR1]
Length = 337
Score = 183 bits (464), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 109/286 (38%), Positives = 166/286 (58%), Gaps = 11/286 (3%)
Query: 8 CYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPL 67
C E L+ DY + +C CGLV+ + ID G EWR F +++ + SRVG P
Sbjct: 41 CPECGSRQLVHDYERAELVCQNCGLVLDEEFIDRGPEWRAFDHDQR-MKRSRVGAPMTFT 99
Query: 68 LNGSDLSTMI------GPGRGDASFDG---FGMSKYQNR-RTMNSSDRALLNAIREINSM 117
++ LSTMI GR +S + + + K+Q R R N+++R L A+ E++ M
Sbjct: 100 IHDKGLSTMIDWRNRDSYGRAISSKNRAQLYRLRKWQRRIRVSNATERNLAFALSELDRM 159
Query: 118 ADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVS 177
A + L + + + A +++ D ++GRS + +A+A LY ACRQ VPRT EI VS
Sbjct: 160 ASALGLPRNVRETAAVVYRDAVDKNLIRGRSIEGVAAAALYAACRQCSVPRTLDEIAEVS 219
Query: 178 KISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDI 237
++S+KEIGR ++ I + L + + D++ RFCS L+L VQ A I R+A E ++
Sbjct: 220 RVSRKEIGRTYRFISRELGLKLLPTSPIDYVPRFCSGLNLKGEVQSRAVEILRQAGEREL 279
Query: 238 VPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
GR P VAAAAIY++S ++R+Q+E+ ++AGV EVTIR YK
Sbjct: 280 TSGRGPTGVAAAAIYISSILGGERRTQREVAEVAGVTEVTIRNRYK 325
Score = 38.5 bits (88), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 52/96 (54%), Gaps = 1/96 (1%)
Query: 208 MSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEI 267
+ R S L LP V++ A + R AV+ +++ GRS VAAAA+Y A + S R+ EI
Sbjct: 156 LDRMASALGLPRNVRETAAVVYRDAVDKNLIRGRSIEGVAAAALYAACRQCSVPRTLDEI 215
Query: 268 GDIAGVAEVTIRQSYKLMYPHAS-KLFPQDFVFHTP 302
+++ V+ I ++Y+ + KL P + + P
Sbjct: 216 AEVSRVSRKEIGRTYRFISRELGLKLLPTSPIDYVP 251
>gi|88603722|ref|YP_503900.1| transcription initiation factor IIB [Methanospirillum hungatei
JF-1]
gi|88189184|gb|ABD42181.1| Transcription initiation factor IIB (TFIIB) [Methanospirillum
hungatei JF-1]
Length = 337
Score = 182 bits (463), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 109/286 (38%), Positives = 165/286 (57%), Gaps = 11/286 (3%)
Query: 8 CYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPL 67
C E L+ DY + +C +CGLV+ ID G EWR F +++ + SRVG P
Sbjct: 41 CPECGSRQLVHDYERAELVCQQCGLVIDAEFIDRGPEWRAFDHDQR-MKRSRVGAPMTFT 99
Query: 68 LNGSDLSTMI------GPGRGDASFDG---FGMSKYQNR-RTMNSSDRALLNAIREINSM 117
++ LSTMI GR +S + + + K+Q R R N+++R L A+ E++ M
Sbjct: 100 IHDKGLSTMIDWRNRDSYGRAISSKNRAQLYRLRKWQRRIRVSNATERNLAFALSELDRM 159
Query: 118 ADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVS 177
A + L + + + A +++ D ++GRS + +A+A LY ACRQ VPRT EI VS
Sbjct: 160 ASALGLPRNVRETAAVVYRDAVDKNLIRGRSIEGVAAAALYAACRQCSVPRTLDEIAEVS 219
Query: 178 KISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDI 237
++S+KEIGR ++ I + L + + D++ RFCS L L VQ A I R+A E ++
Sbjct: 220 RVSRKEIGRTYRFISRELGLKLLPTSPIDYVPRFCSGLQLKGEVQSRAVEILRQAGEREL 279
Query: 238 VPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
GR P VAAAAIY++S ++R+Q+E+ ++AGV EVTIR YK
Sbjct: 280 TSGRGPTGVAAAAIYISSILGGERRTQREVAEVAGVTEVTIRNRYK 325
Score = 38.5 bits (88), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 52/96 (54%), Gaps = 1/96 (1%)
Query: 208 MSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEI 267
+ R S L LP V++ A + R AV+ +++ GRS VAAAA+Y A + S R+ EI
Sbjct: 156 LDRMASALGLPRNVRETAAVVYRDAVDKNLIRGRSIEGVAAAALYAACRQCSVPRTLDEI 215
Query: 268 GDIAGVAEVTIRQSYKLMYPHAS-KLFPQDFVFHTP 302
+++ V+ I ++Y+ + KL P + + P
Sbjct: 216 AEVSRVSRKEIGRTYRFISRELGLKLLPTSPIDYVP 251
>gi|15897377|ref|NP_341982.1| transcription initiation factor IIB [Sulfolobus solfataricus P2]
gi|284173282|ref|ZP_06387251.1| transcription initiation factor IIB [Sulfolobus solfataricus 98/2]
gi|14195237|sp|P58111.1|TF2B1_SULSO RecName: Full=Transcription initiation factor IIB 1; Short=TFIIB 1
gi|13813602|gb|AAK40772.1| Transcription initiation factor IIB (TFIIB) homolog (TFB-1)
[Sulfolobus solfataricus P2]
Length = 309
Score = 182 bits (463), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 105/290 (36%), Positives = 162/290 (55%), Gaps = 11/290 (3%)
Query: 4 NKVCCYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGP 63
NK P +I D G+ ICSE G V+ D++ID G EWR F+ E+ SRVGGP
Sbjct: 8 NKSVSTPCPPDKIIFDAERGEYICSETGEVLEDKIIDQGPEWRAFTPEEKE-KRSRVGGP 66
Query: 64 ENPLLNGSDLSTMIGPGRGDA---------SFDGFGMSKYQNR-RTMNSSDRALLNAIRE 113
N ++ LST+I DA + K+Q R R +S DR L A+ E
Sbjct: 67 LNNTIHDRGLSTLIDWKDKDAMGRTLDPKRRLEALRWRKWQIRARIQSSIDRNLAQAMNE 126
Query: 114 INSMADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEI 173
+ + + +NL K++ D A ++++ + ++GRS +++ +A +Y ACR+ + RT EI
Sbjct: 127 LERIGNLLNLPKSVKDEAALIYRKAVEKGLVRGRSIESVVAAAIYAACRRMKLARTLDEI 186
Query: 174 CAVSKISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAV 233
+K ++KE+ RC++L+L+ L+ SV + D+++R + L L V K A I KA
Sbjct: 187 AQYTKANRKEVARCYRLLLRELDVSVPVSDPKDYVTRIANLLGLSGAVMKTAAEIIDKAK 246
Query: 234 ELDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
+ G+ P +AAAAIY+AS ++R+QKEI +AGV EVT+R YK
Sbjct: 247 GSGLTAGKDPAGLAAAAIYIASLLHDERRTQKEIAQVAGVTEVTVRNRYK 296
Score = 45.4 bits (106), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 54/106 (50%), Gaps = 3/106 (2%)
Query: 183 EIGRCFKLILKA-LETSVD--LITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVP 239
E R K ++A +++S+D L + + R + L+LP V+ A I RKAVE +V
Sbjct: 99 EALRWRKWQIRARIQSSIDRNLAQAMNELERIGNLLNLPKSVKDEAALIYRKAVEKGLVR 158
Query: 240 GRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLM 285
GRS SV AAAIY A + R+ EI + + Y+L+
Sbjct: 159 GRSIESVVAAAIYAACRRMKLARTLDEIAQYTKANRKEVARCYRLL 204
>gi|397779601|ref|YP_006544074.1| transcription initiation factor IIB [Methanoculleus bourgensis MS2]
gi|396938103|emb|CCJ35358.1| Transcription initiation factor IIB Short=TFIIB [Methanoculleus
bourgensis MS2]
Length = 337
Score = 182 bits (462), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 108/286 (37%), Positives = 166/286 (58%), Gaps = 11/286 (3%)
Query: 8 CYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPL 67
C E L+ DY + +C CGLV+ + ID G EWR F +++ + SRVG P
Sbjct: 41 CPECGSRQLVHDYERAELVCQSCGLVLDEEFIDRGPEWRAFDHDQR-MKRSRVGAPMTFT 99
Query: 68 LNGSDLSTMI------GPGRGDASFDG---FGMSKYQNR-RTMNSSDRALLNAIREINSM 117
++ LSTMI GR +S + + + K+Q R R N+++R L A+ E++ M
Sbjct: 100 IHDKGLSTMIDWRNRDSYGRAISSKNRAQLYRLRKWQRRIRVSNATERNLAFALSELDRM 159
Query: 118 ADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVS 177
A + L + + + A +++ D ++GRS + +A+A LY ACRQ VPRT E+ VS
Sbjct: 160 ASALGLPRNVRETAAVVYRDAVDKNLIRGRSIEGVAAAALYAACRQCSVPRTLDEVAEVS 219
Query: 178 KISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDI 237
++S+KEIGR ++ I + L + + D++ RFCS L+L VQ A I R+A E ++
Sbjct: 220 RVSRKEIGRTYRFISRELGLKLLPTSPIDYVPRFCSGLNLKGEVQSRAVEILRQAGEREL 279
Query: 238 VPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
GR P VAAAAIY++S ++R+Q+E+ ++AGV EVTIR YK
Sbjct: 280 TSGRGPTGVAAAAIYISSILGGERRTQREVAEVAGVTEVTIRNRYK 325
Score = 37.4 bits (85), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 52/96 (54%), Gaps = 1/96 (1%)
Query: 208 MSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEI 267
+ R S L LP V++ A + R AV+ +++ GRS VAAAA+Y A + S R+ E+
Sbjct: 156 LDRMASALGLPRNVRETAAVVYRDAVDKNLIRGRSIEGVAAAALYAACRQCSVPRTLDEV 215
Query: 268 GDIAGVAEVTIRQSYKLMYPHAS-KLFPQDFVFHTP 302
+++ V+ I ++Y+ + KL P + + P
Sbjct: 216 AEVSRVSRKEIGRTYRFISRELGLKLLPTSPIDYVP 251
>gi|229581781|ref|YP_002840180.1| transcription initiation factor IIB [Sulfolobus islandicus
Y.N.15.51]
gi|228012497|gb|ACP48258.1| Transcription factor TFIIB cyclin-related [Sulfolobus islandicus
Y.N.15.51]
Length = 309
Score = 182 bits (462), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 105/290 (36%), Positives = 162/290 (55%), Gaps = 11/290 (3%)
Query: 4 NKVCCYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGP 63
NK P +I D G+ ICSE G V+ D++ID G EWR F+ E+ SRVGGP
Sbjct: 8 NKPVSTPCPPDKIIFDAERGEYICSETGEVLEDKIIDQGPEWRAFTPEEKE-KRSRVGGP 66
Query: 64 ENPLLNGSDLSTMIGPGRGDA---------SFDGFGMSKYQNR-RTMNSSDRALLNAIRE 113
N ++ LST+I DA + K+Q R R +S DR L A+ E
Sbjct: 67 LNNTIHDRGLSTLIDWKDKDAMGRTLDPKRRLEALRWRKWQIRARIQSSIDRNLAQAMNE 126
Query: 114 INSMADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEI 173
+ + + +NL K++ D A ++++ + ++GRS +++ +A +Y ACR+ + RT EI
Sbjct: 127 LERIGNLLNLPKSVKDEAALIYRKAVEKGLVRGRSIESVVAAAIYAACRRMKLARTLDEI 186
Query: 174 CAVSKISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAV 233
+K ++KE+ RC++L+L+ L+ SV + D+++R + L L V K A I KA
Sbjct: 187 AQYTKANRKEVARCYRLLLRELDVSVPVSDPKDYVTRIANLLGLSGAVMKTAAEIIDKAK 246
Query: 234 ELDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
+ G+ P +AAAAIY+AS ++R+QKEI +AGV EVT+R YK
Sbjct: 247 GSGLTAGKDPAGLAAAAIYIASLLHDERRTQKEIAQVAGVTEVTVRNRYK 296
Score = 45.4 bits (106), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 54/106 (50%), Gaps = 3/106 (2%)
Query: 183 EIGRCFKLILKA-LETSVD--LITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVP 239
E R K ++A +++S+D L + + R + L+LP V+ A I RKAVE +V
Sbjct: 99 EALRWRKWQIRARIQSSIDRNLAQAMNELERIGNLLNLPKSVKDEAALIYRKAVEKGLVR 158
Query: 240 GRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLM 285
GRS SV AAAIY A + R+ EI + + Y+L+
Sbjct: 159 GRSIESVVAAAIYAACRRMKLARTLDEIAQYTKANRKEVARCYRLL 204
>gi|384433900|ref|YP_005643258.1| Transcription factor TFIIB cyclin-related protein [Sulfolobus
solfataricus 98/2]
gi|261602054|gb|ACX91657.1| Transcription factor TFIIB cyclin-related protein [Sulfolobus
solfataricus 98/2]
Length = 306
Score = 182 bits (462), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 105/290 (36%), Positives = 162/290 (55%), Gaps = 11/290 (3%)
Query: 4 NKVCCYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGP 63
NK P +I D G+ ICSE G V+ D++ID G EWR F+ E+ SRVGGP
Sbjct: 5 NKSVSTPCPPDKIIFDAERGEYICSETGEVLEDKIIDQGPEWRAFTPEEKE-KRSRVGGP 63
Query: 64 ENPLLNGSDLSTMIGPGRGDA---------SFDGFGMSKYQNR-RTMNSSDRALLNAIRE 113
N ++ LST+I DA + K+Q R R +S DR L A+ E
Sbjct: 64 LNNTIHDRGLSTLIDWKDKDAMGRTLDPKRRLEALRWRKWQIRARIQSSIDRNLAQAMNE 123
Query: 114 INSMADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEI 173
+ + + +NL K++ D A ++++ + ++GRS +++ +A +Y ACR+ + RT EI
Sbjct: 124 LERIGNLLNLPKSVKDEAALIYRKAVEKGLVRGRSIESVVAAAIYAACRRMKLARTLDEI 183
Query: 174 CAVSKISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAV 233
+K ++KE+ RC++L+L+ L+ SV + D+++R + L L V K A I KA
Sbjct: 184 AQYTKANRKEVARCYRLLLRELDVSVPVSDPKDYVTRIANLLGLSGAVMKTAAEIIDKAK 243
Query: 234 ELDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
+ G+ P +AAAAIY+AS ++R+QKEI +AGV EVT+R YK
Sbjct: 244 GSGLTAGKDPAGLAAAAIYIASLLHDERRTQKEIAQVAGVTEVTVRNRYK 293
Score = 45.4 bits (106), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 54/106 (50%), Gaps = 3/106 (2%)
Query: 183 EIGRCFKLILKA-LETSVD--LITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVP 239
E R K ++A +++S+D L + + R + L+LP V+ A I RKAVE +V
Sbjct: 96 EALRWRKWQIRARIQSSIDRNLAQAMNELERIGNLLNLPKSVKDEAALIYRKAVEKGLVR 155
Query: 240 GRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLM 285
GRS SV AAAIY A + R+ EI + + Y+L+
Sbjct: 156 GRSIESVVAAAIYAACRRMKLARTLDEIAQYTKANRKEVARCYRLL 201
>gi|1729909|sp|P50387.1|TF2B_SULSH RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|836952|gb|AAA81380.1| transcription factor TFIIB homolog [Sulfolobus shibatae]
Length = 309
Score = 182 bits (462), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 105/290 (36%), Positives = 162/290 (55%), Gaps = 11/290 (3%)
Query: 4 NKVCCYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGP 63
NK P +I D G+ ICSE G V+ D++ID G EWR F+ E+ SRVGGP
Sbjct: 8 NKSVSTPCPPDKIIFDAERGEYICSETGEVLEDKIIDQGPEWRAFTPEEKE-KRSRVGGP 66
Query: 64 ENPLLNGSDLSTMIGPGRGDA---------SFDGFGMSKYQNR-RTMNSSDRALLNAIRE 113
N ++ LST+I DA + K+Q R R +S DR L A+ E
Sbjct: 67 LNNTIHDRGLSTLIDWKDKDAMGRTLDPKRRLEALRWRKWQIRARIQSSIDRNLAQAMNE 126
Query: 114 INSMADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEI 173
+ + + +NL K++ D A ++++ + ++GRS +++ +A +Y ACR+ + RT EI
Sbjct: 127 LERIGNLLNLPKSVKDEAALIYRKAVEKGLVRGRSIESVVAAAIYAACRRMKLARTLDEI 186
Query: 174 CAVSKISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAV 233
+K ++KE+ RC++L+L+ L+ SV + D+++R + L L V K A I KA
Sbjct: 187 AQYTKANRKEVARCYRLLLRELDVSVPVSDPKDYVTRIANLLGLSGRVMKTAAEIIDKAK 246
Query: 234 ELDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
+ G+ P +AAAAIY+AS ++R+QKEI +AGV EVT+R YK
Sbjct: 247 GSGLTAGKDPAGLAAAAIYIASLLHDERRTQKEIAQVAGVTEVTVRNRYK 296
Score = 45.4 bits (106), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 54/106 (50%), Gaps = 3/106 (2%)
Query: 183 EIGRCFKLILKA-LETSVD--LITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVP 239
E R K ++A +++S+D L + + R + L+LP V+ A I RKAVE +V
Sbjct: 99 EALRWRKWQIRARIQSSIDRNLAQAMNELERIGNLLNLPKSVKDEAALIYRKAVEKGLVR 158
Query: 240 GRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLM 285
GRS SV AAAIY A + R+ EI + + Y+L+
Sbjct: 159 GRSIESVVAAAIYAACRRMKLARTLDEIAQYTKANRKEVARCYRLL 204
>gi|227827925|ref|YP_002829705.1| transcription initiation factor IIB [Sulfolobus islandicus M.14.25]
gi|227830647|ref|YP_002832427.1| transcription initiation factor IIB [Sulfolobus islandicus
L.S.2.15]
gi|229579555|ref|YP_002837954.1| transcription initiation factor IIB [Sulfolobus islandicus
Y.G.57.14]
gi|229585192|ref|YP_002843694.1| transcription initiation factor IIB [Sulfolobus islandicus M.16.27]
gi|238620152|ref|YP_002914978.1| transcription initiation factor IIB [Sulfolobus islandicus M.16.4]
gi|284998175|ref|YP_003419942.1| hypothetical protein [Sulfolobus islandicus L.D.8.5]
gi|385773629|ref|YP_005646195.1| transcription factor TFIIB [Sulfolobus islandicus HVE10/4]
gi|385776265|ref|YP_005648833.1| transcription initiation factor TFIIB, cyclin-related protein
[Sulfolobus islandicus REY15A]
gi|227457095|gb|ACP35782.1| Transcription factor TFIIB cyclin-related [Sulfolobus islandicus
L.S.2.15]
gi|227459721|gb|ACP38407.1| Transcription factor TFIIB cyclin-related [Sulfolobus islandicus
M.14.25]
gi|228010270|gb|ACP46032.1| Transcription factor TFIIB cyclin-related [Sulfolobus islandicus
Y.G.57.14]
gi|228020242|gb|ACP55649.1| Transcription factor TFIIB cyclin-related [Sulfolobus islandicus
M.16.27]
gi|238381222|gb|ACR42310.1| Transcription factor TFIIB cyclin-related [Sulfolobus islandicus
M.16.4]
gi|284446070|gb|ADB87572.1| conserved hypothetical protein [Sulfolobus islandicus L.D.8.5]
gi|323475013|gb|ADX85619.1| transcription initiation factor TFIIB, cyclin-related protein
[Sulfolobus islandicus REY15A]
gi|323477743|gb|ADX82981.1| transcription factor TFIIB [Sulfolobus islandicus HVE10/4]
Length = 309
Score = 182 bits (462), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 105/290 (36%), Positives = 162/290 (55%), Gaps = 11/290 (3%)
Query: 4 NKVCCYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGP 63
NK P +I D G+ ICSE G V+ D++ID G EWR F+ E+ SRVGGP
Sbjct: 8 NKPVSTPCPPDKIIFDAERGEYICSETGEVLEDKIIDQGPEWRAFTPEEKE-KRSRVGGP 66
Query: 64 ENPLLNGSDLSTMIGPGRGDA---------SFDGFGMSKYQNR-RTMNSSDRALLNAIRE 113
N ++ LST+I DA + K+Q R R +S DR L A+ E
Sbjct: 67 LNNTIHDRGLSTLIDWKDKDAMGRTLDPKRRLEALRWRKWQIRARIQSSIDRNLAQAMNE 126
Query: 114 INSMADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEI 173
+ + + +NL K++ D A ++++ + ++GRS +++ +A +Y ACR+ + RT EI
Sbjct: 127 LERIGNLLNLPKSVKDEAALIYRKAVEKGLVRGRSIESVVAAAIYAACRRMKLARTLDEI 186
Query: 174 CAVSKISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAV 233
+K ++KE+ RC++L+L+ L+ SV + D+++R + L L V K A I KA
Sbjct: 187 AQYTKANRKEVARCYRLLLRELDVSVPVSDPKDYVTRIANLLGLSGAVMKTAAEIIDKAK 246
Query: 234 ELDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
+ G+ P +AAAAIY+AS ++R+QKEI +AGV EVT+R YK
Sbjct: 247 GSGLTAGKDPAGLAAAAIYIASLLHDERRTQKEIAQVAGVTEVTVRNRYK 296
Score = 45.4 bits (106), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 54/106 (50%), Gaps = 3/106 (2%)
Query: 183 EIGRCFKLILKA-LETSVD--LITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVP 239
E R K ++A +++S+D L + + R + L+LP V+ A I RKAVE +V
Sbjct: 99 EALRWRKWQIRARIQSSIDRNLAQAMNELERIGNLLNLPKSVKDEAALIYRKAVEKGLVR 158
Query: 240 GRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLM 285
GRS SV AAAIY A + R+ EI + + Y+L+
Sbjct: 159 GRSIESVVAAAIYAACRRMKLARTLDEIAQYTKANRKEVARCYRLL 204
>gi|307354313|ref|YP_003895364.1| transcription factor TFIIB cyclin-like protein [Methanoplanus
petrolearius DSM 11571]
gi|307157546|gb|ADN36926.1| Transcription factor TFIIB cyclin-related protein [Methanoplanus
petrolearius DSM 11571]
Length = 335
Score = 182 bits (461), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 110/286 (38%), Positives = 165/286 (57%), Gaps = 11/286 (3%)
Query: 8 CYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPL 67
C E LI DY + C CGLV+ + ID G EWR F +++ + SRVG P
Sbjct: 39 CPECGSRQLIHDYERAELTCQNCGLVLEEEFIDRGPEWRAFDHDQR-MKRSRVGAPMTFT 97
Query: 68 LNGSDLSTMI------GPGRGDASFDG---FGMSKYQNR-RTMNSSDRALLNAIREINSM 117
++ LSTMI GR +S + + + K+Q R R N+++R L A+ E++ M
Sbjct: 98 IHDKGLSTMIDWRNRDSYGRAISSKNRAQLYRLRKWQRRIRVSNATERNLAFALSELDRM 157
Query: 118 ADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVS 177
A + L + + + A +++ D ++GRS + +A+A LY ACRQ VPRT EI VS
Sbjct: 158 ASALGLPRNVRETAAVVYRDAVDKNLIRGRSIEGVAAAALYAACRQCSVPRTLDEIAEVS 217
Query: 178 KISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDI 237
++S+KEIGR ++ I + L + + D++ RFCS L+L VQ A I R+A E ++
Sbjct: 218 RVSRKEIGRTYRFISRELGLKLLPTSPIDYVPRFCSGLNLKGEVQSRAVEILRQAGEREL 277
Query: 238 VPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
GR P VAAAAIY++S ++R+Q+E+ ++AGV EVTIR YK
Sbjct: 278 TSGRGPTGVAAAAIYISSILGGERRTQREVAEVAGVTEVTIRNRYK 323
Score = 38.5 bits (88), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 52/96 (54%), Gaps = 1/96 (1%)
Query: 208 MSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEI 267
+ R S L LP V++ A + R AV+ +++ GRS VAAAA+Y A + S R+ EI
Sbjct: 154 LDRMASALGLPRNVRETAAVVYRDAVDKNLIRGRSIEGVAAAALYAACRQCSVPRTLDEI 213
Query: 268 GDIAGVAEVTIRQSYKLMYPHAS-KLFPQDFVFHTP 302
+++ V+ I ++Y+ + KL P + + P
Sbjct: 214 AEVSRVSRKEIGRTYRFISRELGLKLLPTSPIDYVP 249
>gi|432328477|ref|YP_007246621.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Aciduliprofundum sp. MAR08-339]
gi|432135186|gb|AGB04455.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Aciduliprofundum sp. MAR08-339]
Length = 312
Score = 181 bits (460), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 106/288 (36%), Positives = 163/288 (56%), Gaps = 15/288 (5%)
Query: 8 CYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPL 67
C E L+ DY G+ +C +CGLV+ + ID G EWR F +E+ SR G P
Sbjct: 16 CPECGSTHLVRDYERGELVCMDCGLVIDEAYIDQGPEWRAFDSEQRD-SRSRTGAPMTYT 74
Query: 68 LNGSDLSTMIG-----------PGRGDASFDGFGMSKYQNR-RTMNSSDRALLNAIREIN 115
++ LST I P R A + + K+Q R R NS++R L A++E+
Sbjct: 75 IHDKGLSTEISWKNKDSYGKSIPTRSRAQL--YRLRKWQKRIRVSNSAERNLSQALQELE 132
Query: 116 SMADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICA 175
MA + L K + + A ++++ ++GRS + + +A +Y ACR G+PRT +EI
Sbjct: 133 RMASNLGLPKDVRETAAVIYRKAVKENMIRGRSIEGVVAASIYAACRMLGIPRTLEEIST 192
Query: 176 VSKISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVEL 235
V++I K+EIGR ++++ + L+ ++ D++ RFCS L L V+ A I + A E
Sbjct: 193 VTRIKKREIGRVYRIMSRTLKLNIYPTKPEDYIDRFCSKLKLSGEVKTKAYEIIKMARER 252
Query: 236 DIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
DI+ GR P VAAAAIY+A+ ++R+Q+E+ D+AGV EVTIR YK
Sbjct: 253 DIISGRGPTGVAAAAIYIAAILMGERRTQREVADVAGVTEVTIRNRYK 300
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 52/99 (52%), Gaps = 12/99 (12%)
Query: 208 MSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEI 267
+ R SNL LP V++ A I RKAV+ +++ GRS V AA+IY A + R+ +EI
Sbjct: 131 LERMASNLGLPKDVRETAAVIYRKAVKENMIRGRSIEGVVAASIYAACRMLGIPRTLEEI 190
Query: 268 GDIAGVAEVTIRQSYKLM--------YPHASKLFPQDFV 298
+ + + I + Y++M YP P+D++
Sbjct: 191 STVTRIKKREIGRVYRIMSRTLKLNIYPTK----PEDYI 225
>gi|169609643|ref|XP_001798240.1| hypothetical protein SNOG_07914 [Phaeosphaeria nodorum SN15]
gi|160701885|gb|EAT84190.2| hypothetical protein SNOG_07914 [Phaeosphaeria nodorum SN15]
Length = 346
Score = 181 bits (459), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 109/319 (34%), Positives = 169/319 (52%), Gaps = 37/319 (11%)
Query: 1 MNINKVC--CYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPS 58
+N+ +C C E P L+E++ +GD +C CG V+G+R ID SEWR ++ VD S
Sbjct: 32 LNVTMMCPDCREMP-PNLVEEFSSGDTVCGSCGRVLGERAIDTRSEWR----HENIVDNS 86
Query: 59 RVGGPENPLLNGSDLSTMIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMA 118
+GS LST IG GD +S+ N+ + ++++L A +I ++
Sbjct: 87 ---------TDGSQLSTEIG--FGDGGLRVRELSRAHNKSNHDKANKSLQAAYSQIATLC 135
Query: 119 DRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSK 178
D N++K + A LF+ D K KG+S DAI + C++IACR G R+F+EI ++
Sbjct: 136 DSQNISKPTAETAKLLFRVTDDAKLFKGKSQDAIIAGCIFIACRNHGQQRSFREIFKMTN 195
Query: 179 ISKKEIGRCFKLILKALETSVDLIT-------------TG------DFMSRFCSNLSLPN 219
+SKKE+GR FK + L+ + + T TG + M R C+ L L
Sbjct: 196 VSKKEVGRTFKALEAFLQKNQKVGTASSNLLHDTTNFQTGVTTSAENLMPRACNKLGLET 255
Query: 220 MVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIR 279
+Q A AR E I GRSP+S+A A +Y+ S ++ KEIG V++ TIR
Sbjct: 256 YIQLVAEECARTVTEHGIAAGRSPLSIAGAVLYLVSHLMGTPKTPKEIGLAVEVSDGTIR 315
Query: 280 QSYKLMYPHASKLFPQDFV 298
+YKLM+ A+K+ +D++
Sbjct: 316 TAYKLMHAQANKIIKEDWI 334
>gi|159466284|ref|XP_001691339.1| hypothetical protein CHLREDRAFT_115221 [Chlamydomonas reinhardtii]
gi|158279311|gb|EDP05072.1| predicted protein [Chlamydomonas reinhardtii]
Length = 312
Score = 181 bits (458), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 119/303 (39%), Positives = 169/303 (55%), Gaps = 17/303 (5%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSN-EKSGVDPSRVGGPENPLLNGSDLS 74
+E GD +C +CG V R+ID SEWRTFS+ +K DP+RVGGP N LL G L+
Sbjct: 14 FVEFKSEGDLVCRKCGTVKESRLIDERSEWRTFSDKDKDTTDPNRVGGPTNHLLEG--LT 71
Query: 75 TMIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADRINLTKTIVDRANNL 134
T IG R D + +++ R N+ DR L+NA +E+ M D + + + DRA +
Sbjct: 72 TTIGRERNDGGL-SYALNRIHAR--TNNPDRLLVNAFKEVGRMCDLLGVRGAVKDRACEI 128
Query: 135 FKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEI--CAVSKISKKEIGRCFKLI- 191
+K+V + K+LKGRS A+A++CL+ ACRQE PRTFKEI C + +SKKEIGR FK +
Sbjct: 129 YKEVVEAKSLKGRSVKALAASCLFWACRQEKQPRTFKEIVSCLGNDVSKKEIGRTFKDLQ 188
Query: 192 -LKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELD-IVP--GRSPISVA 247
LK E S L + ++ A IA A D +P GR+P SVA
Sbjct: 189 QLKKDELHRQGAAADALASSCNQTLRMDFKWRRLAEDIATAAKPADRRMPWDGRTPTSVA 248
Query: 248 AAAIYMA---SQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKLFPQDFVFHTPIH 304
+A + +A ++A D+ K + ++ VAE TIR YK ++PH +L P + V +
Sbjct: 249 SAVVLIAMALAEARFDEALSK-VAVVSSVAEGTIRGVYKDLFPHLRELVPTESVRDEELQ 307
Query: 305 ELP 307
LP
Sbjct: 308 RLP 310
>gi|351694833|gb|EHA97751.1| Transcription initiation factor IIB [Heterocephalus glaber]
Length = 131
Score = 181 bits (458), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 84/119 (70%), Positives = 98/119 (82%)
Query: 5 KVCCYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPE 64
+V C HP+A L++DYRAGD IC ECGLV GDRVIDVGSEWRTFSN K+ DPS+VG +
Sbjct: 12 RVTCPNHPNAILVQDYRAGDMICPECGLVAGDRVIDVGSEWRTFSNGKATKDPSQVGDAQ 71
Query: 65 NPLLNGSDLSTMIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADRINL 123
NPLL+ DLSTMIG G G ASFD FG SKYQNRRTM+SSD+A++NA +EI +MADRINL
Sbjct: 72 NPLLSNGDLSTMIGKGTGAASFDEFGYSKYQNRRTMSSSDQAMMNAFKEITTMADRINL 130
>gi|330926698|ref|XP_003301569.1| hypothetical protein PTT_13105 [Pyrenophora teres f. teres 0-1]
gi|311323527|gb|EFQ90325.1| hypothetical protein PTT_13105 [Pyrenophora teres f. teres 0-1]
Length = 357
Score = 180 bits (457), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 107/326 (32%), Positives = 167/326 (51%), Gaps = 40/326 (12%)
Query: 1 MNINKVC--CYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPS 58
+N+ +C C E+P L+E++ AGD IC CG V+ +R ID + DPS
Sbjct: 32 LNVALICPDCKENP-PNLVEEFSAGDTICGSCGRVLAERTIDT---------HQGNDDPS 81
Query: 59 RVGGPENPLLNGSDLSTMIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMA 118
R+G NPLL+GS L T IG GD +S+ N+ + ++AL A +I ++
Sbjct: 82 RIGDAANPLLHGSQLQTEIG--FGDGGMRVRDLSRAHNKSNHDKVNKALQAAYGQITALC 139
Query: 119 DRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSK 178
D N+++ + A LFK D K KG+S DAI + C++IACR+ R+F+EI ++
Sbjct: 140 DSQNISRPTAETAKMLFKMTDDAKLFKGKSQDAIIAGCIFIACRKHDQQRSFREIFKMTN 199
Query: 179 ISKKEIGRCFKLILKALETS-----------------VDLI---------TTGDFMSRFC 212
+SKKE+GR FK++ ++ S V+L+ + M R C
Sbjct: 200 VSKKEVGRTFKVLEAFIQKSQNNGGPSIAGNGAVIDTVNLLNQKGGTTATSAASLMPRAC 259
Query: 213 SNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAG 272
+ L+L VQ A A + + GRSP+S+A A +Y+ S +S KEIG
Sbjct: 260 AKLALGTQVQMVAEECADQVAHYGVAAGRSPLSIAGACLYLVSHLMGQPKSPKEIGLAVE 319
Query: 273 VAEVTIRQSYKLMYPHASKLFPQDFV 298
V++ TIR +YKLM+ K+ +++
Sbjct: 320 VSDGTIRTAYKLMHTEQDKIIKPEWI 345
>gi|115465251|ref|NP_001056225.1| Os05g0548200 [Oryza sativa Japonica Group]
gi|57863857|gb|AAW56898.1| putative transcription initiation factor TFIIB [Oryza sativa
Japonica Group]
gi|113579776|dbj|BAF18139.1| Os05g0548200 [Oryza sativa Japonica Group]
gi|215741580|dbj|BAG98075.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 316
Score = 180 bits (457), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 119/303 (39%), Positives = 170/303 (56%), Gaps = 34/303 (11%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSG--VDPSRVGGPENPLLNGSDL 73
++ D+ GD IC+EC LV+ R ID SEWRTF+N+ + DP+RVG +P L
Sbjct: 21 VVLDHTTGDTICTECALVLDARYIDETSEWRTFANDGASDDRDPNRVGDRADPFLPDHVG 80
Query: 74 STMIG-----PGRGDASFDGFGMSKYQNRRTMN----SSDRALLNAIREINSMADRINLT 124
T I P DA+ RR ++ S + AL+ A R I MADR+ L
Sbjct: 81 GTTIAYSSAPPKSADAA-------PLLTRRRVDVVGPSPENALVAAFRGIADMADRLGLV 133
Query: 125 KTIVDRANNLFKQVHDG--KNL-KGRSNDAIASACLYIACRQEGVPRTFKEICAVS---K 178
TI DRA +FK++ + K L +GR+ DA+ +ACL+IACR EG+PRT+KE+ +V+
Sbjct: 134 ATIRDRAKEVFKKLGEAPTKGLPRGRNRDAVYAACLFIACRNEGMPRTYKELASVTAEGA 193
Query: 179 ISKKEIGRCFKLILKAL-------ETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARK 231
+KKEIGR LI K L + ++ + D++ RFCS L L + +AA R+
Sbjct: 194 AAKKEIGRLTTLIKKHLGDQGEGRAMDIGVVRSTDYLRRFCSRLGLGHQDVRAAGDAVRR 253
Query: 232 AVE-LDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHAS 290
E LD+ R+P S+AAA IYM Q + +S +++ GVAE TI ++K + PHAS
Sbjct: 254 LEERLDVR--RNPESIAAAIIYMVVQRAGGSKSVRDVSTATGVAEGTITAAHKELAPHAS 311
Query: 291 KLF 293
LF
Sbjct: 312 VLF 314
>gi|254166941|ref|ZP_04873795.1| TFIIB zinc-binding family [Aciduliprofundum boonei T469]
gi|254168893|ref|ZP_04875733.1| TFIIB zinc-binding family [Aciduliprofundum boonei T469]
gi|289596150|ref|YP_003482846.1| Transcription factor TFIIB cyclin-related protein [Aciduliprofundum
boonei T469]
gi|197622157|gb|EDY34732.1| TFIIB zinc-binding family [Aciduliprofundum boonei T469]
gi|197624551|gb|EDY37112.1| TFIIB zinc-binding family [Aciduliprofundum boonei T469]
gi|289533937|gb|ADD08284.1| Transcription factor TFIIB cyclin-related protein [Aciduliprofundum
boonei T469]
Length = 312
Score = 180 bits (457), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 104/288 (36%), Positives = 164/288 (56%), Gaps = 15/288 (5%)
Query: 8 CYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPL 67
C E L+ DY G+ +C +CGLV+ + ID G EWR F +E+ +R G P
Sbjct: 16 CPECGSTHLVRDYERGELVCMDCGLVIDESYIDQGPEWRAFDSEQRD-SRTRTGAPMTYT 74
Query: 68 LNGSDLSTMIG-----------PGRGDASFDGFGMSKYQNR-RTMNSSDRALLNAIREIN 115
++ LST I P R A + + K+Q R R NS++R L A++E+
Sbjct: 75 IHDKGLSTEISWKNKDSYGKNIPTRSRAQL--YRLRKWQKRIRVSNSAERNLSQALQELE 132
Query: 116 SMADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICA 175
M+ + L K + + A ++++ ++GRS + + +A +Y ACR G+PRT +EI
Sbjct: 133 RMSSNLGLPKDVRETAAVIYRKAVKENMIRGRSIEGVVAASIYAACRMLGIPRTLEEIST 192
Query: 176 VSKISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVEL 235
V++I K+EIGR ++++ + L+ ++ D++ RFCS L L V+K A I + A E
Sbjct: 193 VTRIKKREIGRVYRIMSRTLKLNIYPTKPEDYIDRFCSKLKLSGEVKKKAYEIIKMARER 252
Query: 236 DIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
DI+ GR P VAAAAIY+A+ ++R+Q+E+ ++AGV EVTIR YK
Sbjct: 253 DIISGRGPTGVAAAAIYIAAILMGERRTQREVAEVAGVTEVTIRNRYK 300
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 52/99 (52%), Gaps = 12/99 (12%)
Query: 208 MSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEI 267
+ R SNL LP V++ A I RKAV+ +++ GRS V AA+IY A + R+ +EI
Sbjct: 131 LERMSSNLGLPKDVRETAAVIYRKAVKENMIRGRSIEGVVAASIYAACRMLGIPRTLEEI 190
Query: 268 GDIAGVAEVTIRQSYKLM--------YPHASKLFPQDFV 298
+ + + I + Y++M YP P+D++
Sbjct: 191 STVTRIKKREIGRVYRIMSRTLKLNIYPTK----PEDYI 225
>gi|24414276|gb|AAN59779.1| Putative transcription initiation factor IIB [Oryza sativa Japonica
Group]
gi|108706635|gb|ABF94430.1| Transcription factor TFIIB repeat family protein [Oryza sativa
Japonica Group]
gi|125542744|gb|EAY88883.1| hypothetical protein OsI_10362 [Oryza sativa Indica Group]
Length = 308
Score = 180 bits (456), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 118/307 (38%), Positives = 174/307 (56%), Gaps = 24/307 (7%)
Query: 4 NKVC-CYE-HPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGV--DPSR 59
N+ C C E H ++ D+ GD IC+EC LV+ +R ID SEWRTFS+ SG DP+R
Sbjct: 7 NEQCYCPECHRTTVVVVDHATGDTICTECALVLEERYIDETSEWRTFSDAGSGEDRDPNR 66
Query: 60 VGGPENPLLNGSDLSTMIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMAD 119
VGG +P L+ ++L T++ P + A + + + D +L A R I+ MAD
Sbjct: 67 VGGCSDPFLSHAELGTVVAPAKRQAK--DTASPPHVRVDSKSGQDSSLAVAFRAISDMAD 124
Query: 120 RINLTKTIVDRANNLFKQVHDGK-NLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSK 178
R+ L TI DRA LFK++ + K + R+ DA +ACL+IACR EG PRT KE+ +V +
Sbjct: 125 RLQLVATIRDRAKELFKKMEEAKLCARVRNRDAAYAACLHIACRNEGNPRTLKELASVMR 184
Query: 179 --ISKKEIGRCFKLILKAL------ETSVDLITTGDFMSRFCSNLSL--PNM--VQKAAT 226
KKEIGR ++I + L + ++ D+MSRF S L + P + Q+AA
Sbjct: 185 DCQDKKEIGRMERIIRRHLGEEAGTAMEMGVVRAADYMSRFGSRLGMGKPEVREAQRAAQ 244
Query: 227 HIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMY 286
+ K LD+ R+P S+AAA IYM Q + + S +++ +GVAE TI+++ K +
Sbjct: 245 TLEDK---LDV--RRNPESIAAAIIYMVVQRAGAQTSARDVSKASGVAEATIKEACKELS 299
Query: 287 PHASKLF 293
H LF
Sbjct: 300 QHEELLF 306
>gi|449017294|dbj|BAM80696.1| transcription initiation factor IIB [Cyanidioschyzon merolae strain
10D]
Length = 377
Score = 179 bits (455), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 111/335 (33%), Positives = 175/335 (52%), Gaps = 38/335 (11%)
Query: 8 CYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPL 67
C E L+ED + GD +C++CG+V + +ID+G EWRTF N+ S DP+RVGG NPL
Sbjct: 14 CGECGSTDLVEDTKNGDLVCAQCGVVAAELLIDLGHEWRTFENDDSAYDPNRVGGSINPL 73
Query: 68 LNGSDLSTMIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADRINLTKTI 127
L+ S L+T I G A+ +++ Q+R ++++DR + I+ + +R L + +
Sbjct: 74 LD-SGLATSISQGPAGANALNERLARAQSRNVLDANDRYVTECYNRISYLCERSGLPQLV 132
Query: 128 VDRANNLFKQVH-------DGKNLKGRSND----AIASACLYIACRQEGVPRTFKEICAV 176
DRA L + + DG + R + +I SA L+IACR EG PRTF EI +
Sbjct: 133 KDRACELLRLYYDHLTLGADGVRARARFREDETASIISAALFIACRNEGFPRTFNEISVI 192
Query: 177 SKISKKEIGRCFKLILKALETSVD-------LITTGDFMSRFCSNLSLPNMVQKAATHIA 229
++K + +KA+E S+ + TT DF+SRFCS L +PN+V+ +A
Sbjct: 193 VSVAKSRVA----AYVKAMEMSIGEAAKISRIRTTDDFVSRFCSYLEIPNIVRSLVNQVA 248
Query: 230 RKAVELDIVPGRSPISVAAAAIYM--------------ASQASSDKRSQKEIGDIAGVAE 275
R A E D + GR+ +S+AA AIY A+ SD+ I +++G+ E
Sbjct: 249 RAAAEKDGIHGRTLVSIAAGAIYFVLLLWRETCPQSIPATLRVSDEALVNRIAEVSGITE 308
Query: 276 VTIRQSYKLMYPHASK-LFPQDFVFHTPIHELPQL 309
++ + + + L P D+V P P+L
Sbjct: 309 GVVKTVASRIRQYRDRGLLPPDWVRRFPSRLEPEL 343
>gi|15678905|ref|NP_276022.1| transcription initiation factor IIB [Methanothermobacter
thermautotrophicus str. Delta H]
gi|14195233|sp|O26971.1|TF2B_METTH RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|2621979|gb|AAB85383.1| transcription initiation factor TFIIB [Methanothermobacter
thermautotrophicus str. Delta H]
Length = 310
Score = 179 bits (455), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 96/277 (34%), Positives = 160/277 (57%), Gaps = 15/277 (5%)
Query: 19 DYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLSTMIG 78
DY + +C +CGLV+ D ++D+G EWR F +E+ +RVG P ++ LSTMI
Sbjct: 25 DYERAEIVCGKCGLVIDDNLVDMGPEWRAFDHEQRD-KRTRVGAPITYTIHDKGLSTMID 83
Query: 79 -----------PGRGDASFDGFGMSKYQNR-RTMNSSDRALLNAIREINSMADRINLTKT 126
P R A + + + K+Q + R +++R L A+ E++ + R+ L ++
Sbjct: 84 WRNKDIYGRDIPARNRAQW--YRLRKWQRKIRISGATERNLAFALSELDRDSSRLGLPRS 141
Query: 127 IVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGR 186
+ + A+ ++++ + K ++GRS + + +A LY ACR+ VPRT EI VS++SKKE+GR
Sbjct: 142 VREAASMVYRRAVENKLIRGRSIEGVVAASLYAACRKCNVPRTLDEIAEVSRVSKKEVGR 201
Query: 187 CFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISV 246
++ + + L + + D++ RF S L L VQ A I A+E + GR P V
Sbjct: 202 TYRFLTRELNIKLPPTSPVDYVPRFASELGLSGEVQSKAIEIIEMAMENGLTSGRGPTGV 261
Query: 247 AAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
AAAA+Y+AS + ++Q+++ ++AGV EVTIR YK
Sbjct: 262 AAAALYIASVLLGEHKTQRDVAEVAGVTEVTIRNRYK 298
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 55/96 (57%), Gaps = 1/96 (1%)
Query: 208 MSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEI 267
+ R S L LP V++AA+ + R+AVE ++ GRS V AA++Y A + + R+ EI
Sbjct: 129 LDRDSSRLGLPRSVREAASMVYRRAVENKLIRGRSIEGVVAASLYAACRKCNVPRTLDEI 188
Query: 268 GDIAGVAEVTIRQSYKLMYPHAS-KLFPQDFVFHTP 302
+++ V++ + ++Y+ + + KL P V + P
Sbjct: 189 AEVSRVSKKEVGRTYRFLTRELNIKLPPTSPVDYVP 224
>gi|242780523|ref|XP_002479613.1| transcription initiation protein [Talaromyces stipitatus ATCC
10500]
gi|218719760|gb|EED19179.1| transcription initiation protein [Talaromyces stipitatus ATCC
10500]
Length = 328
Score = 179 bits (454), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 114/309 (36%), Positives = 163/309 (52%), Gaps = 39/309 (12%)
Query: 8 CYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNE-KSGVDPSRVGGPENP 66
C E P P +E + + +C CGLV+ DR ID+ SEWRTFSN+ ++ DPSRVG N
Sbjct: 28 CKEFP--PNLEFPGSHETVCGSCGLVLADREIDIHSEWRTFSNDDQNNDDPSRVGETSNI 85
Query: 67 LLNGSDLSTMIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADRINLTKT 126
LLNG+ L T I G A+ + + QN+ + +++AL+ A +EI ++ D N+ K
Sbjct: 86 LLNGNQLETSIAGGATGAARQ---LYRAQNKLSSEKNNKALMAAYKEIGALCDGFNIQKI 142
Query: 127 IVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGR 186
+ D A LFK V D K KG+S DA PRTF EI AV+K+S+KEIGR
Sbjct: 143 VADTAKYLFKIVDDHKAFKGKSQDA---------------PRTFSEIFAVTKVSRKEIGR 187
Query: 187 CFKLILKALETSVDLITTG-----------------DFMSRFCSNLSLPNMVQKAATHIA 229
+K + K T+ ++ T D RF + L L AA ++
Sbjct: 188 IYKSLEKFF-TAQNIERTAIVGSDAGFKQTTSTKPSDLCERFGTFLGLDYRTWNAAATLS 246
Query: 230 RKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHA 289
K + + GRSP+S+ AA IYM S +S KEI ++ GV++ TIR +YK +Y
Sbjct: 247 DKVTKDGDLAGRSPLSIVAACIYMISHLCGVPKSAKEISNVVGVSDGTIRGAYKQLYAER 306
Query: 290 SKLFPQDFV 298
+L DF+
Sbjct: 307 DRLLTDDFI 315
>gi|315230585|ref|YP_004071021.1| transcription initiation factor B [Thermococcus barophilus MP]
gi|315183613|gb|ADT83798.1| transcription initiation factor B [Thermococcus barophilus MP]
Length = 306
Score = 179 bits (453), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 97/278 (34%), Positives = 156/278 (56%), Gaps = 11/278 (3%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLST 75
LI D G+ +C+ CG VV +ID G EWR F ++ V RVG P +++ LS+
Sbjct: 18 LIYDPERGEIVCTACGYVVAQNIIDSGPEWRAFDADQR-VKRGRVGAPMTMMIHDKGLSS 76
Query: 76 MIGPGR---------GDASFDGFGMSKYQNR-RTMNSSDRALLNAIREINSMADRINLTK 125
I G + + K+Q R R ++++R L A+ E++ MA ++ L +
Sbjct: 77 TIDWKNKDIHGHDISGTMRAKMYRLRKWQRRIRVSDAAERNLAFALSELDRMASQLGLPR 136
Query: 126 TIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIG 185
I + A L+++ + ++GRS + + +ACLY ACR VPRT EI V+++ KKEIG
Sbjct: 137 NIKEMAAALYRKAVMERLIRGRSIEGVTAACLYAACRMAKVPRTLDEIEEVARVDKKEIG 196
Query: 186 RCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPIS 245
R ++ I + L + + D++SRF L L + A I +KA++L + GR P+
Sbjct: 197 RSYRFIARELHLRLTPTSPIDYVSRFADQLGLSERTKNRAVKILQKAIKLGLTSGRGPMG 256
Query: 246 VAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
VAAAA+Y+AS +K++Q+E+ ++A V EVT+R YK
Sbjct: 257 VAAAALYIASVLEGEKKTQREVAEVAHVTEVTVRNRYK 294
Score = 45.1 bits (105), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 49/95 (51%), Gaps = 4/95 (4%)
Query: 208 MSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEI 267
+ R S L LP +++ A + RKAV ++ GRS V AA +Y A + + R+ EI
Sbjct: 125 LDRMASQLGLPRNIKEMAAALYRKAVMERLIRGRSIEGVTAACLYAACRMAKVPRTLDEI 184
Query: 268 GDIAGVAEVTIRQSYKL----MYPHASKLFPQDFV 298
++A V + I +SY+ ++ + P D+V
Sbjct: 185 EEVARVDKKEIGRSYRFIARELHLRLTPTSPIDYV 219
>gi|16081986|ref|NP_394398.1| transcription initiation factor IIB [Thermoplasma acidophilum DSM
1728]
gi|14195243|sp|Q9HJM7.1|TF2B1_THEAC RecName: Full=Transcription initiation factor IIB 1; Short=TFIIB 1
gi|10640255|emb|CAC12069.1| transcription initiation factor IIB related protein [Thermoplasma
acidophilum]
Length = 312
Score = 178 bits (452), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 99/288 (34%), Positives = 158/288 (54%), Gaps = 15/288 (5%)
Query: 8 CYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPL 67
C E LI DY G+ +C ECG V+ D ID G EWR F +E++ +R G P
Sbjct: 16 CPECGSTNLIRDYEHGELVCGECGAVIEDAYIDQGPEWRAFDSEQNE-SRARAGSPMTYT 74
Query: 68 LNGSDLSTMIG-----------PGRGDASFDGFGMSKYQNR-RTMNSSDRALLNAIREIN 115
++ LST I P R A + + K+Q R + N+++R L A++E+
Sbjct: 75 IHDKGLSTDISWKNKDSYGRSIPTRNRAQL--YRLRKWQKRIKVSNAAERNLSQALQELE 132
Query: 116 SMADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICA 175
MA +++ + + A ++++ ++GRS + + + LY ACR VPRT EI +
Sbjct: 133 RMASNLSIPDDVKETAAVIYRKAVKQNMIRGRSIEGVVAGALYAACRITNVPRTLGEIAS 192
Query: 176 VSKISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVEL 235
V+++ KKEIGR ++++ + L+ ++ D++SRFCS L L + A I R A
Sbjct: 193 VTRVKKKEIGRTYRIMSRYLKLNIMPSKAEDYISRFCSKLKLSMDTRNKALEILRSAENA 252
Query: 236 DIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
+ G+ P VAAAAIY+AS + ++R+Q+ + ++AGV EVTIR YK
Sbjct: 253 GLTSGKGPTGVAAAAIYIASLMTGERRTQRAVAEVAGVTEVTIRNRYK 300
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 48/78 (61%)
Query: 208 MSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEI 267
+ R SNLS+P+ V++ A I RKAV+ +++ GRS V A A+Y A + ++ R+ EI
Sbjct: 131 LERMASNLSIPDDVKETAAVIYRKAVKQNMIRGRSIEGVVAGALYAACRITNVPRTLGEI 190
Query: 268 GDIAGVAEVTIRQSYKLM 285
+ V + I ++Y++M
Sbjct: 191 ASVTRVKKKEIGRTYRIM 208
>gi|304315034|ref|YP_003850181.1| transcription initiation factor IIB [Methanothermobacter
marburgensis str. Marburg]
gi|302588493|gb|ADL58868.1| transcription initiation factor IIB [Methanothermobacter
marburgensis str. Marburg]
Length = 310
Score = 178 bits (451), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 99/288 (34%), Positives = 162/288 (56%), Gaps = 15/288 (5%)
Query: 8 CYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPL 67
C E L DY + +C +CGLV+ D ++D+G EWR F +E+ +RVG P
Sbjct: 14 CPECGSEDLRGDYERAEIVCGKCGLVIDDNLVDMGPEWRAFDHEQRD-KRTRVGAPITYT 72
Query: 68 LNGSDLSTMIG-----------PGRGDASFDGFGMSKYQNR-RTMNSSDRALLNAIREIN 115
++ LSTMI P R A + + + K+Q + R +++R L A+ E++
Sbjct: 73 IHDKGLSTMIDWRNKDIYGRDIPARNRAQW--YRLRKWQRKIRISGATERNLAFALSELD 130
Query: 116 SMADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICA 175
+ R+ L +++ + A+ ++++ + K ++GRS + + +A LY ACR VPRT EI
Sbjct: 131 RDSSRLGLPRSVREAASMVYRRAVENKLIRGRSIEGVVAASLYAACRSCNVPRTLDEIAE 190
Query: 176 VSKISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVEL 235
VS++SKKE+GR ++ + + L + + D++ RF S L L VQ A I A+E
Sbjct: 191 VSRVSKKEVGRTYRFLTRELNIKLPPTSPVDYVPRFASELGLSGEVQSKAIEIIEMAMEN 250
Query: 236 DIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
+ GR P VAAAA+Y+AS + ++Q+++ ++AGV EVTIR YK
Sbjct: 251 GLTSGRGPTGVAAAALYIASVLLGECKTQRDVAEVAGVTEVTIRNRYK 298
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 56/96 (58%), Gaps = 1/96 (1%)
Query: 208 MSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEI 267
+ R S L LP V++AA+ + R+AVE ++ GRS V AA++Y A ++ + R+ EI
Sbjct: 129 LDRDSSRLGLPRSVREAASMVYRRAVENKLIRGRSIEGVVAASLYAACRSCNVPRTLDEI 188
Query: 268 GDIAGVAEVTIRQSYKLMYPHAS-KLFPQDFVFHTP 302
+++ V++ + ++Y+ + + KL P V + P
Sbjct: 189 AEVSRVSKKEVGRTYRFLTRELNIKLPPTSPVDYVP 224
>gi|13541914|ref|NP_111602.1| transcription initiation factor IIB [Thermoplasma volcanium GSS1]
gi|21363020|sp|Q979Q3.1|TF2B1_THEVO RecName: Full=Transcription initiation factor IIB 1; Short=TFIIB 1
gi|14325345|dbj|BAB60249.1| transcription initiation factor B [TFB] [Thermoplasma volcanium
GSS1]
Length = 312
Score = 177 bits (450), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 99/288 (34%), Positives = 159/288 (55%), Gaps = 15/288 (5%)
Query: 8 CYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPL 67
C E LI DY G+ +C ECG V+ D ID G EWR F +E++ +R G P
Sbjct: 16 CPECGSTNLIRDYEHGELVCGECGAVIEDSYIDQGPEWRAFDSEQNE-SRARAGSPMTFT 74
Query: 68 LNGSDLSTMIG-----------PGRGDASFDGFGMSKYQNR-RTMNSSDRALLNAIREIN 115
++ LST I P R A + + K+Q R + N+++R L A++E+
Sbjct: 75 IHDKGLSTDISWKNKDSYGRSIPTRNRAQL--YRLRKWQKRIKVSNAAERNLSQALQELE 132
Query: 116 SMADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICA 175
MA +++ + + A ++++ ++GRS + + + LY ACR VPRT EI +
Sbjct: 133 RMAFNLSIPNDVRETAAVIYRKAVKQNMIRGRSIEGVVAGALYAACRITNVPRTLGEIAS 192
Query: 176 VSKISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVEL 235
V+++ KKEIGR ++++ + L+ ++ D++SRFCS L L + A I R A +
Sbjct: 193 VTRVKKKEIGRTYRIMSRYLKLNIMPSKAEDYISRFCSKLKLSMDTRNKALEILRDAENV 252
Query: 236 DIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
+ G+ P VAAAAIY+AS + ++R+Q+ + ++AGV EVTIR YK
Sbjct: 253 GLTSGKGPTGVAAAAIYIASLITGERRTQRAVAEVAGVTEVTIRNRYK 300
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 47/78 (60%)
Query: 208 MSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEI 267
+ R NLS+PN V++ A I RKAV+ +++ GRS V A A+Y A + ++ R+ EI
Sbjct: 131 LERMAFNLSIPNDVRETAAVIYRKAVKQNMIRGRSIEGVVAGALYAACRITNVPRTLGEI 190
Query: 268 GDIAGVAEVTIRQSYKLM 285
+ V + I ++Y++M
Sbjct: 191 ASVTRVKKKEIGRTYRIM 208
>gi|125553198|gb|EAY98907.1| hypothetical protein OsI_20862 [Oryza sativa Indica Group]
Length = 319
Score = 177 bits (448), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 113/301 (37%), Positives = 170/301 (56%), Gaps = 27/301 (8%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSG--VDPSRVGGPENPLL----N 69
++ D+ GD IC+EC LV+ R ID SEWRTF+N+ + DP+RVG +P L
Sbjct: 21 VVLDHTTGDTICTECALVLDARYIDETSEWRTFANDGASDDRDPNRVGDRADPFLPDHVG 80
Query: 70 GSDLSTMIGPGRGDASFDGFGMSKYQNRRTMN----SSDRALLNAIREINSMADRINLTK 125
G+ ++ P + ++ + RR ++ S + AL+ A R I MADR+ L
Sbjct: 81 GTTIAYSAAPPKNASAA--DAAAPLLTRRRVDVVGPSPENALVAAFRGIADMADRLGLVA 138
Query: 126 TIVDRANNLFKQVHDGKN--LKGRSNDAIASACLYIACRQEGVPRTFKEICAVS---KIS 180
TI DRA +FK++ + +GR+ D + +ACL+IACR EG+PRT+KE+ +V+ +
Sbjct: 139 TIRDRAKEVFKKLGEAPKGFPRGRNRDTVYAACLFIACRNEGMPRTYKELASVTAEGAAA 198
Query: 181 KKEIGRCFKLILKAL-------ETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAV 233
KKEIGR LI K L + ++ + D++ RFCS L L + +AA R+
Sbjct: 199 KKEIGRLTTLIKKHLGDQGEGRAMDIGVVRSTDYLRRFCSRLGLGHQDVRAAGDAVRRLE 258
Query: 234 E-LDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKL 292
E LD+ R+P S+AAA IYM Q + +S +++ GVAE TI ++K + PHAS L
Sbjct: 259 ERLDVR--RNPESIAAAIIYMVVQRAGGSKSVRDVSTATGVAEGTITAAHKELAPHASVL 316
Query: 293 F 293
F
Sbjct: 317 F 317
>gi|325959508|ref|YP_004290974.1| transcription initiation factor iiB [Methanobacterium sp. AL-21]
gi|325330940|gb|ADZ10002.1| Transcription initiation factor IIB [Methanobacterium sp. AL-21]
Length = 325
Score = 177 bits (448), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 97/288 (33%), Positives = 161/288 (55%), Gaps = 15/288 (5%)
Query: 8 CYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPL 67
C E +I D G+ C CGLV+ D ++D+G EWR F NE+ +RVG P
Sbjct: 29 CPECGSEQIINDPERGEVACGACGLVIDDNIMDMGPEWRAFDNEQRD-KRTRVGAPMTYT 87
Query: 68 LNGSDLSTMIG-----------PGRGDASFDGFGMSKYQNR-RTMNSSDRALLNAIREIN 115
++ LSTMI P R A + + + K+Q + R +++R L A+ E++
Sbjct: 88 IHDKGLSTMIDWRNKDIYGRDIPARNRAQW--YRLRKWQRKIRISGATERNLAFALSELD 145
Query: 116 SMADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICA 175
+ R+ L +++ + A+ +++ + K ++GRS + + +A LY ACR+ VPRT EI
Sbjct: 146 RDSSRLGLPRSVREAASVVYRNAVENKLIRGRSIEGVVAASLYAACRKCNVPRTLDEIAE 205
Query: 176 VSKISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVEL 235
VS++ KKE+GR ++ + + L + + D++ RF S L+L VQ A I A+
Sbjct: 206 VSRVGKKEVGRTYRFLTRELNIKLPPTSPVDYIPRFASELNLSGEVQSKAIEIINNAMAK 265
Query: 236 DIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
+ G+ P VAAAA+Y+AS ++++Q+++ ++AGV EVTIR YK
Sbjct: 266 GLTSGKGPTGVAAAALYIASVLLGERKTQRDVAEVAGVTEVTIRNRYK 313
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 53/96 (55%), Gaps = 1/96 (1%)
Query: 208 MSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEI 267
+ R S L LP V++AA+ + R AVE ++ GRS V AA++Y A + + R+ EI
Sbjct: 144 LDRDSSRLGLPRSVREAASVVYRNAVENKLIRGRSIEGVVAASLYAACRKCNVPRTLDEI 203
Query: 268 GDIAGVAEVTIRQSYKLMYPHAS-KLFPQDFVFHTP 302
+++ V + + ++Y+ + + KL P V + P
Sbjct: 204 AEVSRVGKKEVGRTYRFLTRELNIKLPPTSPVDYIP 239
>gi|254580795|ref|XP_002496383.1| ZYRO0C17116p [Zygosaccharomyces rouxii]
gi|238939274|emb|CAR27450.1| ZYRO0C17116p [Zygosaccharomyces rouxii]
Length = 346
Score = 176 bits (445), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 102/311 (32%), Positives = 168/311 (54%), Gaps = 17/311 (5%)
Query: 1 MNINKVC--CYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNE-KSGVDP 57
+NI C C +P ++E + GD +C+ CGLV+ DR++D SEWRTFSN+ ++G DP
Sbjct: 17 LNIVLTCPECKVYP-PKIVERFSEGDCVCALCGLVLSDRLVDTRSEWRTFSNDDQNGDDP 75
Query: 58 SRVGGPENPLLNGSDLSTMIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSM 117
SRVG NPLL+G+ LST IG G G + +++ Q++ ++ D + +I +
Sbjct: 76 SRVGEAANPLLDGNSLSTRIGQGEGGDARATRDLNRAQSKNVLDKKDNEIQAIFIKITML 135
Query: 118 ADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVS 177
D L K + D A ++K +D + LKG+S +++ +A + + CR+ V RT E+ ++
Sbjct: 136 CDVAELPKIVKDSAKEIYKLCYDSRALKGKSMESVIAAAILLGCRRAKVARTLTEVQSMI 195
Query: 178 KISKKEIGRCFKLILKAL-ETSVDLITTGD-----------FMSRFCSNLSLPNMVQKAA 225
+ +KE + KL+ L E S D I D ++ RFCS+L LP + A+
Sbjct: 196 HVRRKEFSKSLKLMSSILMEKSADGIIKIDRGDMNGATNLSYIPRFCSHLGLPMQLTTAS 255
Query: 226 THIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLM 285
+ A K E++ + G+SPI++A AI+ + I + V E TI+ Y+ +
Sbjct: 256 EYTAGKCKEIEEIAGKSPITIAVVAIFFNVLLFKIPLTASRIAKVLQVTEGTIKSGYRSL 315
Query: 286 YPHASKLF-PQ 295
Y H ++ PQ
Sbjct: 316 YEHRDQMVDPQ 326
>gi|289192865|ref|YP_003458806.1| Transcription factor TFIIB cyclin-related protein
[Methanocaldococcus sp. FS406-22]
gi|288939315|gb|ADC70070.1| Transcription factor TFIIB cyclin-related protein
[Methanocaldococcus sp. FS406-22]
Length = 334
Score = 176 bits (445), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 92/283 (32%), Positives = 159/283 (56%), Gaps = 11/283 (3%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLST 75
+++DY + +C++CG V+ +++ D+G EWR F +E+ + RVG P ++ LST
Sbjct: 46 VVKDYERAEIVCAKCGCVIKEKLFDIGPEWRAFDHEQK-IKRCRVGAPMTYTIHDKGLST 104
Query: 76 MIGPGRGDA---------SFDGFGMSKYQNR-RTMNSSDRALLNAIREINSMADRINLTK 125
+I D+ + + K+Q R R ++++R L A+ E++ + ++ L +
Sbjct: 105 VIDWRNKDSYGKDLSANKRAQLYRLRKWQRRIRVSDAAERNLAFALSELDRITSKLGLPR 164
Query: 126 TIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIG 185
+ + A +++ D ++GRS + + +A +Y ACR+ VPRT EI S++ +KEIG
Sbjct: 165 HVRENAAIIYRGAVDKGLIRGRSIEGVVAAAIYAACRRCRVPRTLDEIAEASRVDRKEIG 224
Query: 186 RCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPIS 245
R ++ + + L + D++ RF S L LP V+ A I ++A E + GR P
Sbjct: 225 RTYRFLARELNIKLTPTNPIDYVPRFASELGLPGEVESKAIQILQQAAEKGLTSGRGPTG 284
Query: 246 VAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPH 288
VAAAAIY+AS +R+Q+E+ ++AGV EVTIR YK + H
Sbjct: 285 VAAAAIYIASVLLGCRRTQREVAEVAGVTEVTIRNRYKELTEH 327
>gi|386002924|ref|YP_005921223.1| Transcription initiation factor IIB [Methanosaeta harundinacea 6Ac]
gi|357210980|gb|AET65600.1| Transcription initiation factor IIB [Methanosaeta harundinacea 6Ac]
Length = 337
Score = 175 bits (444), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 111/288 (38%), Positives = 167/288 (57%), Gaps = 11/288 (3%)
Query: 6 VCCYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPEN 65
V C E L+ DY + +CS+CGLV+ + ID G EWR F +++ + SRVG P
Sbjct: 39 VECPECGSHALVHDYERAELVCSDCGLVIDENFIDQGPEWRAFDHDQR-MKRSRVGAPMT 97
Query: 66 PLLNGSDLSTMIGPGRGDA---------SFDGFGMSKYQNR-RTMNSSDRALLNAIREIN 115
++ LSTMI D+ + + K+Q R R N+++R L A+ E++
Sbjct: 98 YTIHDKGLSTMIDWRNRDSYGKTISSKNRAQLYRLRKWQRRIRVSNATERNLAFALSELD 157
Query: 116 SMADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICA 175
MA + L++ + + A ++++ D ++GRS + +A+A LY ACRQ VPRT EI
Sbjct: 158 RMASALGLSRNVRETAAVIYRKAVDKNLIRGRSIEGVAAAALYAACRQCNVPRTLDEIAE 217
Query: 176 VSKISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVEL 235
VS++S+KEIGR ++ + + L + + D++ RFCS LSL VQ I R+A E
Sbjct: 218 VSRVSRKEIGRTYRFVSRELALKLMPTSPIDYIPRFCSGLSLKGEVQAKGIEILRQAAEK 277
Query: 236 DIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
++ GR P VAAAAIY+AS D+R+Q+E+ D+AGV EVTIR YK
Sbjct: 278 ELTSGRGPTGVAAAAIYIASILCGDRRTQREVADVAGVTEVTIRNRYK 325
Score = 38.1 bits (87), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 56/103 (54%), Gaps = 6/103 (5%)
Query: 208 MSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEI 267
+ R S L L V++ A I RKAV+ +++ GRS VAAAA+Y A + + R+ EI
Sbjct: 156 LDRMASALGLSRNVRETAAVIYRKAVDKNLIRGRSIEGVAAAALYAACRQCNVPRTLDEI 215
Query: 268 GDIAGVAEVTIRQSYKLMYPH-ASKLFPQDFVFHTPIHELPQL 309
+++ V+ I ++Y+ + A KL P +PI +P+
Sbjct: 216 AEVSRVSRKEIGRTYRFVSRELALKLMPT-----SPIDYIPRF 253
>gi|336121697|ref|YP_004576472.1| transcription initiation factor IIB [Methanothermococcus
okinawensis IH1]
gi|334856218|gb|AEH06694.1| Transcription initiation factor IIB [Methanothermococcus
okinawensis IH1]
Length = 336
Score = 175 bits (443), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 105/283 (37%), Positives = 164/283 (57%), Gaps = 11/283 (3%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLST 75
+I+DY + +C++CG V+ + DVG EWR F +E+ V SRVG P ++ LST
Sbjct: 48 VIKDYERAEIVCADCGCVLQQNLFDVGPEWRAFDHEQR-VKRSRVGAPMTYTIHDKGLST 106
Query: 76 MIGPGRGDA-----SFDG----FGMSKYQNR-RTMNSSDRALLNAIREINSMADRINLTK 125
+I D+ S D + + K+Q R R ++S+R L A+ E++ +A ++ L +
Sbjct: 107 VIDWRNKDSYGKDISADKRAQLYRLRKWQRRIRVSDASERNLAFALSELDRIASKLGLPR 166
Query: 126 TIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIG 185
+ + A L++ + ++GRS + +A+A LY ACR+ VPRT EI +S++ +KEIG
Sbjct: 167 NVRENAAVLYRGAVEKGLIRGRSIEGVAAAALYAACRRCKVPRTLDEIAEISRVDRKEIG 226
Query: 186 RCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPIS 245
R ++ I + L+ + D++ RF S L LP V+ A I +KA E + GR P
Sbjct: 227 RTYRFISRELKIRLAPTNPIDYVPRFASELKLPGEVESKAIAILQKANEKGLTSGRGPTG 286
Query: 246 VAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPH 288
VAAAAIY+AS +R+Q+E+ D+AGV EVTIR YK + H
Sbjct: 287 VAAAAIYIASVLHGTRRTQREVADVAGVTEVTIRNRYKELTEH 329
>gi|326500524|dbj|BAK06351.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 316
Score = 175 bits (443), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 116/307 (37%), Positives = 169/307 (55%), Gaps = 19/307 (6%)
Query: 4 NKVCCYE-HPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVD--PSRV 60
+V C E H ++ D+ GD IC+EC LV+ ID SEWR F+++ G D PSRV
Sbjct: 11 ERVYCPECHRATEVMLDHATGDTICTECALVLDAHYIDECSEWRNFADDGGGDDRDPSRV 70
Query: 61 GGPENPLLNGSDLSTMIGPGRGDASFDGFGMSKYQNRRTMNSS---DRALLNAIREINSM 117
G +P LN + ++ + A+ G + R ++S + L++ R I M
Sbjct: 71 GASGDPFLNAKLSTVIVYSNKSSATGVGANALPRMSVRDADASAASENTLVDGFRGIADM 130
Query: 118 ADRINLTKTIVDRANNLFKQVHDGKNL-KGRSNDAIASACLYIACRQEGVPRTFKEICAV 176
ADR+ L TI D A FK+++D K +GR DA+ +ACLYIACR G+PRT+KE+ +V
Sbjct: 131 ADRLGLVATIRDLAKETFKKLYDAKGSPRGRKRDAVYAACLYIACRNLGMPRTYKELASV 190
Query: 177 SK---ISKKEIGRCFKLILKALETS------VDLITTGDFMSRFCSNLSLPNMVQKAATH 227
+ SKK+IG+ I + L + +++ D++ RFCS L L N + A
Sbjct: 191 TAGGAESKKDIGKMTTHIKRLLGEEDGQVMDIGVVSASDYLRRFCSRLGLGNQEVRDAQE 250
Query: 228 IARKAVE-LDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMY 286
RK E LD+ R+P SVAAA IYM Q + RS K++ GVAE TI++++K +
Sbjct: 251 AVRKVEEGLDVR--RNPESVAAAIIYMVVQRAGAGRSVKDVSVATGVAEGTIKEAHKDLS 308
Query: 287 PHASKLF 293
PHA LF
Sbjct: 309 PHAQMLF 315
>gi|18977749|ref|NP_579106.1| transcription initiation factor IIB [Pyrococcus furiosus DSM 3638]
gi|397651869|ref|YP_006492450.1| transcription initiation factor IIB [Pyrococcus furiosus COM1]
gi|48429160|sp|P61998.1|TF2B_PYRFU RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|48429161|sp|P61999.1|TF2B_PYRWO RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|1206029|gb|AAC43724.1| TFIIB [Pyrococcus furiosus]
gi|18893488|gb|AAL81501.1| transcription initiation factor IIB chain b [Pyrococcus furiosus
DSM 3638]
gi|393189460|gb|AFN04158.1| transcription initiation factor IIB [Pyrococcus furiosus COM1]
Length = 300
Score = 175 bits (443), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 99/291 (34%), Positives = 166/291 (57%), Gaps = 12/291 (4%)
Query: 1 MNINKVC--CYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPS 58
MN KVC C A LI D G+ +C++CG V+ + +ID+G EWR F + S
Sbjct: 1 MNKQKVCPAC---ESAELIYDPERGEIVCAKCGYVIEENIIDMGPEWRAFDASQRE-RRS 56
Query: 59 RVGGPENPLLNGSDLSTMIGPGR---GDASFDGFGMSKYQNR-RTMNSSDRALLNAIREI 114
R G PE+ LL+ LST IG R G + + K+Q+R R ++++R L A+ E+
Sbjct: 57 RTGAPESILLHDKGLSTEIGIDRSLSGLMREKMYRLRKWQSRLRVSDAAERNLAFALSEL 116
Query: 115 NSMADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEIC 174
+ + ++ L + + + A L+++ ++GRS +++ +AC+Y ACR VPRT EI
Sbjct: 117 DRITAQLKLPRHVEEEAARLYREAVRKGLIRGRSIESVMAACVYAACRLLKVPRTLDEIA 176
Query: 175 AVSKISKKEIGRCFKLILKALETSVD--LITTGDFMSRFCSNLSLPNMVQKAATHIARKA 232
++++ KKEIGR ++ I + L + + D++++F L L V++ A I +A
Sbjct: 177 DIARVDKKEIGRSYRFIARNLNLTPKKLFVKPTDYVNKFADELGLSEKVRRRAIEILDEA 236
Query: 233 VELDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
+ + G+SP + AAA+Y+AS +KR+Q+E+ ++A V EVT+R YK
Sbjct: 237 YKRGLTSGKSPAGLVAAALYIASLLEGEKRTQREVAEVARVTEVTVRNRYK 287
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 52/97 (53%), Gaps = 6/97 (6%)
Query: 208 MSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEI 267
+ R + L LP V++ A + R+AV ++ GRS SV AA +Y A + R+ EI
Sbjct: 116 LDRITAQLKLPRHVEEEAARLYREAVRKGLIRGRSIESVMAACVYAACRLLKVPRTLDEI 175
Query: 268 GDIAGVAEVTIRQSYKLMYPHAS----KLF--PQDFV 298
DIA V + I +SY+ + + + KLF P D+V
Sbjct: 176 ADIARVDKKEIGRSYRFIARNLNLTPKKLFVKPTDYV 212
Score = 42.4 bits (98), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 46/86 (53%)
Query: 114 INSMADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEI 173
+N AD + L++ + RA + + + G+S + +A LYIA EG RT +E+
Sbjct: 212 VNKFADELGLSEKVRRRAIEILDEAYKRGLTSGKSPAGLVAAALYIASLLEGEKRTQREV 271
Query: 174 CAVSKISKKEIGRCFKLILKALETSV 199
V+++++ + +K +++ L+ V
Sbjct: 272 AEVARVTEVTVRNRYKELVEKLKIKV 297
>gi|159905293|ref|YP_001548955.1| transcription initiation factor IIB [Methanococcus maripaludis C6]
gi|226703638|sp|A9A8Q0.1|TF2B_METM6 RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|159886786|gb|ABX01723.1| Transcription factor TFIIB cyclin-related [Methanococcus
maripaludis C6]
Length = 339
Score = 174 bits (442), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 106/283 (37%), Positives = 161/283 (56%), Gaps = 11/283 (3%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLST 75
+I+DY + +C CG V+ + DVG EWR F +E+ V SRVG P ++ LST
Sbjct: 51 IIKDYERAEIVCEMCGCVLQQNLFDVGPEWRAFDHEQR-VKRSRVGAPMTYTIHDKGLST 109
Query: 76 MIGPGRGDA-----SFDG----FGMSKYQNR-RTMNSSDRALLNAIREINSMADRINLTK 125
+I D+ S D + + K+Q R R ++S+R L A+ E++ +A ++ L +
Sbjct: 110 VIDWRNKDSYGKDISADKRAQLYRLRKWQRRIRVSDASERNLAFALSELDRIASKLGLPR 169
Query: 126 TIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIG 185
+ + A L++ + ++GRS + +A+A LY ACR+ VPRT EI VS++ +KEIG
Sbjct: 170 NVRENAAVLYRGAVEKGLIRGRSIEGVAAAALYAACRRCKVPRTLDEIAEVSRVDRKEIG 229
Query: 186 RCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPIS 245
R ++ I + L + D++ RF S L LP V+ A I +KA E + GR P
Sbjct: 230 RTYRFISRELNIRLAPTNPVDYVPRFASELKLPGEVESKAISILQKAGEKGLTSGRGPTG 289
Query: 246 VAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPH 288
VAAAAIY+AS +R+Q+E+ D+AGV EVTIR YK + H
Sbjct: 290 VAAAAIYIASVLQGTRRTQREVADVAGVTEVTIRNRYKELTEH 332
>gi|150401578|ref|YP_001325344.1| transcription initiation factor IIB [Methanococcus aeolicus
Nankai-3]
gi|189029853|sp|A6UW60.1|TF2B_META3 RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|150014281|gb|ABR56732.1| Transcription factor TFIIB cyclin-related [Methanococcus aeolicus
Nankai-3]
Length = 334
Score = 174 bits (442), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 104/283 (36%), Positives = 165/283 (58%), Gaps = 11/283 (3%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLST 75
+I+DY + +C +CG V+ D + DVG EWR F +E+ V SRVG P ++ LST
Sbjct: 46 IIKDYEKAEIVCEDCGCVLQDNLFDVGPEWRAFDHEQR-VKRSRVGAPMTYTIHDKGLST 104
Query: 76 MIGPGRGDA-----SFDG----FGMSKYQNR-RTMNSSDRALLNAIREINSMADRINLTK 125
+I D+ S D + + K+Q R R ++S+R L A+ E++ +A ++ L +
Sbjct: 105 VIDWRNKDSYGKDISADKRAQLYRLRKWQRRIRVSDASERNLAFALSELDRIASKLGLPR 164
Query: 126 TIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIG 185
+ + A L++ + ++GRS + +A+A LY ACR+ VPRT EI +S++ +KEIG
Sbjct: 165 NVRENAAVLYRGAVEKGLIRGRSIEGVAAAALYAACRRCKVPRTLDEIAEMSRVDRKEIG 224
Query: 186 RCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPIS 245
R ++ I + L+ + + D++ RF S L LP V+ A I +KA + + GR P
Sbjct: 225 RTYRFISRELKIRLAPTSPIDYVPRFASELKLPGEVESKAISILQKAGDKGLTSGRGPTG 284
Query: 246 VAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPH 288
VAAAAIY+AS +++Q+E+ D+AGV EVTIR YK + H
Sbjct: 285 VAAAAIYIASVLHGTRKTQREVADVAGVTEVTIRNRYKELTEH 327
>gi|389851971|ref|YP_006354205.1| transcription initiation factor B [Pyrococcus sp. ST04]
gi|388249277|gb|AFK22130.1| Transcription initiation factor B [Pyrococcus sp. ST04]
Length = 302
Score = 174 bits (442), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 94/276 (34%), Positives = 157/276 (56%), Gaps = 7/276 (2%)
Query: 14 APLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDL 73
+ LI DY G+ C+ CG VV +ID+G EWR F + SR G PE+ L++ L
Sbjct: 16 SKLIYDYERGEIFCAVCGSVVTQDIIDLGQEWRAFDVSQRN-KRSRTGAPESILIHDKGL 74
Query: 74 STMIGPGR---GDASFDGFGMSKYQNR-RTMNSSDRALLNAIREINSMADRINLTKTIVD 129
ST IG + G + + K+Q+R R +++DR L A+ E++ + ++ L + + +
Sbjct: 75 STNIGSDKNVSGLMREKMYRLRKWQSRLRVGDATDRNLAFALTELDRITSQLKLPRYVKE 134
Query: 130 RANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGRCFK 189
A L+++ ++GRS +++ +AC+Y ACR +PRT EI ++++ KKEIGR F+
Sbjct: 135 EAARLYREAVRKGLIRGRSIESVIAACVYAACRLLKIPRTLDEIADIARVDKKEIGRSFR 194
Query: 190 LILKALETSVD--LITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVA 247
I + L + + D++++F L L ++ A I A +L I G+SP +
Sbjct: 195 FIARNLNLTPKKLFVKPTDYVTKFADELGLSEKTRRRAVEILEMAYKLGITSGKSPAGLV 254
Query: 248 AAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
AAA+Y+AS +KR+Q+E+ ++A V EVT+R YK
Sbjct: 255 AAALYIASLLEGEKRTQREVAEVARVTEVTVRNRYK 290
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 52/97 (53%), Gaps = 6/97 (6%)
Query: 208 MSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEI 267
+ R S L LP V++ A + R+AV ++ GRS SV AA +Y A + R+ EI
Sbjct: 119 LDRITSQLKLPRYVKEEAARLYREAVRKGLIRGRSIESVIAACVYAACRLLKIPRTLDEI 178
Query: 268 GDIAGVAEVTIRQSYKLMYPHAS----KLF--PQDFV 298
DIA V + I +S++ + + + KLF P D+V
Sbjct: 179 ADIARVDKKEIGRSFRFIARNLNLTPKKLFVKPTDYV 215
>gi|150402961|ref|YP_001330255.1| transcription initiation factor IIB [Methanococcus maripaludis C7]
gi|189029856|sp|A6VI28.1|TF2B_METM7 RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|150033991|gb|ABR66104.1| Transcription factor TFIIB cyclin-related [Methanococcus
maripaludis C7]
Length = 339
Score = 174 bits (442), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 106/283 (37%), Positives = 161/283 (56%), Gaps = 11/283 (3%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLST 75
+I+DY + +C CG V+ + DVG EWR F +E+ V SRVG P ++ LST
Sbjct: 51 IIKDYERAEIVCEMCGCVLQQNLFDVGPEWRAFDHEQR-VKRSRVGAPMTYTIHDKGLST 109
Query: 76 MIGPGRGDA-----SFDG----FGMSKYQNR-RTMNSSDRALLNAIREINSMADRINLTK 125
+I D+ S D + + K+Q R R ++S+R L A+ E++ +A ++ L +
Sbjct: 110 VIDWRNKDSYGKDISADKRAQLYRLRKWQRRIRVSDASERNLAFALSELDRIASKLGLPR 169
Query: 126 TIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIG 185
+ + A L++ + ++GRS + +A+A LY ACR+ VPRT EI VS++ +KEIG
Sbjct: 170 NVRENAAVLYRGAVEKGLIRGRSIEGVAAAALYAACRRCKVPRTLDEIAEVSRVDRKEIG 229
Query: 186 RCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPIS 245
R ++ I + L + D++ RF S L LP V+ A I +KA E + GR P
Sbjct: 230 RTYRFISRELNIRLAPTNPVDYVPRFASELKLPGEVESKAISILQKAGEKGLTSGRGPTG 289
Query: 246 VAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPH 288
VAAAAIY+AS +R+Q+E+ D+AGV EVTIR YK + H
Sbjct: 290 VAAAAIYIASVLQGTRRTQREVADVAGVTEVTIRNRYKELTEH 332
>gi|45357604|ref|NP_987161.1| transcription initiation factor IIB [Methanococcus maripaludis S2]
gi|74556259|sp|Q6M176.1|TF2B_METMP RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|45047164|emb|CAF29597.1| transcription initiation factor B [Methanococcus maripaludis S2]
Length = 339
Score = 174 bits (442), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 106/283 (37%), Positives = 161/283 (56%), Gaps = 11/283 (3%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLST 75
+I+DY + +C CG V+ + DVG EWR F +E+ V SRVG P ++ LST
Sbjct: 51 IIKDYERAEIVCEMCGCVLQQNLFDVGPEWRAFDHEQR-VKRSRVGAPMTYTIHDKGLST 109
Query: 76 MIGPGRGDA-----SFDG----FGMSKYQNR-RTMNSSDRALLNAIREINSMADRINLTK 125
+I D+ S D + + K+Q R R ++S+R L A+ E++ +A ++ L +
Sbjct: 110 VIDWRNKDSYGKDISADKRAQLYRLRKWQRRIRVSDASERNLAFALSELDRIASKLGLPR 169
Query: 126 TIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIG 185
+ + A L++ + ++GRS + +A+A LY ACR+ VPRT EI VS++ +KEIG
Sbjct: 170 NVRENAAVLYRGAVEKGLIRGRSIEGVAAAALYAACRRCKVPRTLDEIAEVSRVDRKEIG 229
Query: 186 RCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPIS 245
R ++ I + L + D++ RF S L LP V+ A I +KA E + GR P
Sbjct: 230 RTYRFISRELNIRLAPTNPVDYVPRFASELKLPGEVESKAISILQKAGERGLTSGRGPTG 289
Query: 246 VAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPH 288
VAAAAIY+AS +R+Q+E+ D+AGV EVTIR YK + H
Sbjct: 290 VAAAAIYIASVLQGTRRTQREVADVAGVTEVTIRNRYKELTEH 332
>gi|224141495|ref|XP_002324107.1| predicted protein [Populus trichocarpa]
gi|222867109|gb|EEF04240.1| predicted protein [Populus trichocarpa]
Length = 297
Score = 174 bits (442), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 106/293 (36%), Positives = 170/293 (58%), Gaps = 11/293 (3%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLST 75
++ D+ GD ICS+CGLV+ ID +EWRTF+++ + DP+RVG NPLL+ +L T
Sbjct: 11 IVLDHCTGDTICSDCGLVLESCYIDEIAEWRTFNDDNNDKDPNRVGYNVNPLLSQGNLKT 70
Query: 76 MIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADRINLTKTIVDRANNLF 135
+I +GD + ++Q+ +++SDR LL I +A+R+ L + I DRA +F
Sbjct: 71 LISNNKGD-----HAIPRWQD--GVSNSDRVLLQGFDIIEIIANRLGLVRPIKDRAKEIF 123
Query: 136 KQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSK-ISKKEIGRCFKLILKA 194
K++ + K R D+I +ACL+I+ R+ +PRT EI +V ++KKEI + + I +
Sbjct: 124 KKIEEQKTCVMRKRDSICAACLFISSRENKLPRTLNEISSVVYGVTKKEINKAVQSIKRH 183
Query: 195 LETS-VDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYM 253
+E + + + + RFCSNL + N KA K ++DI R+P SV AA IY
Sbjct: 184 VELEDMGTLNPSELVRRFCSNLGMKNHAVKAVHEAVEKIQDVDI--RRNPKSVLAAIIYT 241
Query: 254 ASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKLFPQDFVFHTPIHEL 306
+Q S +K+ ++I A VAE TI++S+K + PH S+L P+ + I +
Sbjct: 242 ITQLSDEKKPLRDISLAADVAEGTIKKSFKDISPHVSRLVPKWYAREEDIRRI 294
>gi|291333532|gb|ADD93228.1| transcription initiation factor IIB [uncultured archaeon
MedDCM-OCT-S08-C54]
Length = 311
Score = 174 bits (441), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 102/280 (36%), Positives = 161/280 (57%), Gaps = 12/280 (4%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLST 75
L DY + +C++CGLV+ D ++D G EWR F ++ +R G P + L LST
Sbjct: 24 LKRDYDHAEIVCADCGLVLEDNIVDTGPEWRAFDMQQENA-LARAGPPMSTTLPDKGLST 82
Query: 76 MIGP------GRGDASFDG---FGMSKYQNR-RTMNSSDRALLNAIREINSMADRINLTK 125
I P GR ++ + F M K+Q R R S++R + A+RE+ ++A + L +
Sbjct: 83 EISPTNRDYYGRSISNKNQSMLFRMRKWQRRARASKSAERNMAVAMREMQAVATNLKLPR 142
Query: 126 TIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIG 185
I + A ++++ ++L GR+ + +A A LY ACRQEGVPRT EI S+ S+KEI
Sbjct: 143 RIQETAAFIYRRAIQEQSLSGRAIEMVACAALYAACRQEGVPRTLTEISRHSRYSRKEIS 202
Query: 186 RCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPIS 245
R +++++KAL+ D++ R CS L L V+ AA + R A ++ + PIS
Sbjct: 203 RTYQVMVKALKMHSMPPLPEDYLPRICSKLELSPKVEGAARDLLRAAQDVPLT-NSVPIS 261
Query: 246 VAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLM 285
+AAAA+Y+AS ++++R QK++ A + EVTIR YK M
Sbjct: 262 LAAAAVYIASIVNNERRKQKDVARAADLTEVTIRSRYKEM 301
>gi|150399786|ref|YP_001323553.1| transcription initiation factor IIB [Methanococcus vannielii SB]
gi|150399791|ref|YP_001323558.1| transcription initiation factor IIB [Methanococcus vannielii SB]
gi|150399796|ref|YP_001323563.1| transcription initiation factor IIB [Methanococcus vannielii SB]
gi|150399801|ref|YP_001323568.1| transcription initiation factor IIB [Methanococcus vannielii SB]
gi|150012489|gb|ABR54941.1| Transcription factor TFIIB cyclin-related [Methanococcus vannielii
SB]
gi|150012494|gb|ABR54946.1| Transcription factor TFIIB cyclin-related [Methanococcus vannielii
SB]
gi|150012499|gb|ABR54951.1| Transcription factor TFIIB cyclin-related [Methanococcus vannielii
SB]
gi|150012504|gb|ABR54956.1| Transcription factor TFIIB cyclin-related [Methanococcus vannielii
SB]
Length = 339
Score = 174 bits (441), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 106/283 (37%), Positives = 161/283 (56%), Gaps = 11/283 (3%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLST 75
+I+DY + +C CG V+ + DVG EWR F +E+ V SRVG P ++ LST
Sbjct: 51 IIKDYERAEIVCEMCGCVLQQNLFDVGPEWRAFDHEQR-VKRSRVGAPMTYTIHDKGLST 109
Query: 76 MIGPGRGDA-----SFDG----FGMSKYQNR-RTMNSSDRALLNAIREINSMADRINLTK 125
+I D+ S D + + K+Q R R ++S+R L A+ E++ +A ++ L +
Sbjct: 110 VIDWRNKDSYGKDISADKRAQLYRLRKWQRRIRVSDASERNLAFALSELDRIASKLGLPR 169
Query: 126 TIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIG 185
+ + A L++ + ++GRS + +A+A LY ACR+ VPRT EI VS++ +KEIG
Sbjct: 170 NVRENAAVLYRGAVEKGLIRGRSIEGVAAAALYAACRRCKVPRTLDEIAEVSRVDRKEIG 229
Query: 186 RCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPIS 245
R ++ I + L + D++ RF S L LP V+ A I +KA E + GR P
Sbjct: 230 RTYRFISRELNIRLAPTNPIDYVPRFASELKLPGEVESKAISILQKAGERGLTSGRGPTG 289
Query: 246 VAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPH 288
VAAAAIY+AS +R+Q+E+ D+AGV EVTIR YK + H
Sbjct: 290 VAAAAIYIASVLQGTRRTQREVADVAGVTEVTIRNRYKELTEH 332
>gi|330507703|ref|YP_004384131.1| transcription initiation factor IIB [Methanosaeta concilii GP6]
gi|328928511|gb|AEB68313.1| transcription initiation factor IIB [Methanosaeta concilii GP6]
Length = 337
Score = 174 bits (441), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 110/288 (38%), Positives = 167/288 (57%), Gaps = 11/288 (3%)
Query: 6 VCCYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPEN 65
V C E L+ DY + +CS+CGLV+ + ID G EWR F +++ + SRVG P
Sbjct: 39 VECPECKSHTLVRDYERAELVCSDCGLVIDENFIDQGPEWRAFDHDQR-MKRSRVGAPMT 97
Query: 66 PLLNGSDLSTMIGPGRGDA---------SFDGFGMSKYQNR-RTMNSSDRALLNAIREIN 115
++ LSTMI D+ + + K+Q R R N+++R L A+ E++
Sbjct: 98 YTIHDKGLSTMIDWRNRDSYGKTISSKNRAQLYRLRKWQRRIRVSNATERNLAFALSELD 157
Query: 116 SMADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICA 175
MA + L++ + + A ++++ D ++GRS + +A+A LY ACRQ VPRT EI
Sbjct: 158 RMASALGLSRNVRETAAVVYRKAVDKNLIRGRSIEGVAAAALYAACRQCNVPRTLDEIAE 217
Query: 176 VSKISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVEL 235
VS++S+KEIGR ++ + + L + + D++ RFCS L+L VQ I R+A E
Sbjct: 218 VSRVSRKEIGRTYRFVSRELALKLMPTSPIDYIPRFCSGLNLKGEVQAKGIEILRQAAEK 277
Query: 236 DIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
++ GR P VAAAAIY+AS D+R+Q+E+ D+AGV EVTIR YK
Sbjct: 278 ELTSGRGPTGVAAAAIYIASILCGDRRTQREVADVAGVTEVTIRNRYK 325
Score = 37.4 bits (85), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 56/103 (54%), Gaps = 6/103 (5%)
Query: 208 MSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEI 267
+ R S L L V++ A + RKAV+ +++ GRS VAAAA+Y A + + R+ EI
Sbjct: 156 LDRMASALGLSRNVRETAAVVYRKAVDKNLIRGRSIEGVAAAALYAACRQCNVPRTLDEI 215
Query: 268 GDIAGVAEVTIRQSYKLMYPH-ASKLFPQDFVFHTPIHELPQL 309
+++ V+ I ++Y+ + A KL P +PI +P+
Sbjct: 216 AEVSRVSRKEIGRTYRFVSRELALKLMPT-----SPIDYIPRF 253
>gi|435851445|ref|YP_007313031.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Methanomethylovorans hollandica
DSM 15978]
gi|433662075|gb|AGB49501.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Methanomethylovorans hollandica
DSM 15978]
Length = 337
Score = 174 bits (441), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 115/290 (39%), Positives = 170/290 (58%), Gaps = 15/290 (5%)
Query: 6 VCCYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPEN 65
V C E L++DY + +CSECGLVV +D G EWR F +++ + SRVG P
Sbjct: 39 VQCPECGSRNLVQDYERAELVCSECGLVVDAEFVDEGPEWRAFDHDQR-MKRSRVGAPMT 97
Query: 66 PLLNGSDLSTMIGPGRGDASFDG---------FGMSKYQNR-RTMNSSDRALLNAIREIN 115
++ LSTMI D+ + + K+Q R R N+++R L A+ E++
Sbjct: 98 YTIHDKGLSTMIDWRNRDSYGKSISSKNRAQLYRLRKWQRRIRVSNATERNLAFALSELD 157
Query: 116 SMADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICA 175
MA + L +T+ + A ++++ D ++GRS + +A+A LY ACRQ VPRT EI
Sbjct: 158 RMASALGLPRTVRETAAVVYRKAVDKNLIRGRSIEGVAAAALYAACRQCSVPRTLDEIGE 217
Query: 176 VSKISKKEIGRCFKLILKALETSVDLITTG--DFMSRFCSNLSLPNMVQKAATHIARKAV 233
VS++S+KEIGR ++ I + L S+ L+ T D++ RFCS L+L VQ I R+A
Sbjct: 218 VSRVSRKEIGRTYRFISREL--SLKLMPTSPIDYVPRFCSGLNLKGEVQSKGVEILRQAS 275
Query: 234 ELDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
E ++ GR P VAAAAIY+AS ++R+Q+E+ D+AGV EVTIR YK
Sbjct: 276 EKELTSGRGPTGVAAAAIYIASILCGERRTQREVADVAGVTEVTIRNRYK 325
Score = 45.4 bits (106), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 55/96 (57%), Gaps = 1/96 (1%)
Query: 208 MSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEI 267
+ R S L LP V++ A + RKAV+ +++ GRS VAAAA+Y A + S R+ EI
Sbjct: 156 LDRMASALGLPRTVRETAAVVYRKAVDKNLIRGRSIEGVAAAALYAACRQCSVPRTLDEI 215
Query: 268 GDIAGVAEVTIRQSYKLMYPHAS-KLFPQDFVFHTP 302
G+++ V+ I ++Y+ + S KL P + + P
Sbjct: 216 GEVSRVSRKEIGRTYRFISRELSLKLMPTSPIDYVP 251
>gi|410670096|ref|YP_006922467.1| transcription initiation factor IIB [Methanolobus psychrophilus
R15]
gi|409169224|gb|AFV23099.1| transcription initiation factor IIB [Methanolobus psychrophilus
R15]
Length = 337
Score = 174 bits (441), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 115/291 (39%), Positives = 171/291 (58%), Gaps = 15/291 (5%)
Query: 5 KVCCYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPE 64
KV C E L++DY + +CS+CGLVV +D G EWR F +++ + SRVG P
Sbjct: 38 KVQCPECGSRSLVQDYERAELVCSDCGLVVDAEFVDEGPEWRAFDHDQR-MKRSRVGAPM 96
Query: 65 NPLLNGSDLSTMIGPGRGDASFDG---------FGMSKYQNR-RTMNSSDRALLNAIREI 114
++ LSTMI D+ + + K+Q R R N+++R L A+ E+
Sbjct: 97 TYTIHDKGLSTMIDWRNRDSYGKSISSKNRAQLYRLRKWQRRIRVSNATERNLAFALSEL 156
Query: 115 NSMADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEIC 174
+ MA + L +T+ + A ++++ D ++GRS + +A+A LY ACRQ VPRT EI
Sbjct: 157 DRMASALGLPRTVRETAAVVYRKAVDKNLIRGRSIEGVAAAALYAACRQCSVPRTLDEIG 216
Query: 175 AVSKISKKEIGRCFKLILKALETSVDLITTG--DFMSRFCSNLSLPNMVQKAATHIARKA 232
VS++S+KEIGR ++ I + L S+ L+ T D++ RFCS L+L VQ I R+A
Sbjct: 217 EVSRVSRKEIGRTYRFISREL--SLKLMPTSPIDYVPRFCSGLNLKGEVQSRGVEILRQA 274
Query: 233 VELDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
E ++ GR P VAAAAIY+AS ++R+Q+E+ D+AGV EVTIR YK
Sbjct: 275 SEKELTSGRGPTGVAAAAIYIASILCGERRTQREVADVAGVTEVTIRNRYK 325
Score = 45.4 bits (106), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 55/96 (57%), Gaps = 1/96 (1%)
Query: 208 MSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEI 267
+ R S L LP V++ A + RKAV+ +++ GRS VAAAA+Y A + S R+ EI
Sbjct: 156 LDRMASALGLPRTVRETAAVVYRKAVDKNLIRGRSIEGVAAAALYAACRQCSVPRTLDEI 215
Query: 268 GDIAGVAEVTIRQSYKLMYPHAS-KLFPQDFVFHTP 302
G+++ V+ I ++Y+ + S KL P + + P
Sbjct: 216 GEVSRVSRKEIGRTYRFISRELSLKLMPTSPIDYVP 251
>gi|159041370|ref|YP_001540622.1| transcription initiation factor IIB [Caldivirga maquilingensis
IC-167]
gi|189029851|sp|A8MCX6.1|TF2B_CALMQ RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|157920205|gb|ABW01632.1| Transcription factor TFIIB cyclin-related [Caldivirga
maquilingensis IC-167]
Length = 336
Score = 174 bits (440), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 93/272 (34%), Positives = 149/272 (54%), Gaps = 5/272 (1%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNG---SD 72
IED G +C+ CG V+ + ++D G EWR F+ E+ D +R GGP + + +
Sbjct: 53 FIEDAERGQIVCASCGYVLMEHILDTGPEWRAFTPEEKE-DRARTGGPLERVTSEELVTR 111
Query: 73 LSTMIGPGRGDASFDGFGMSKYQNR-RTMNSSDRALLNAIREINSMADRINLTKTIVDRA 131
+ T + + K+Q R R S +R L+ A E+N +A ++ + K+ +D A
Sbjct: 112 IETTLKSPDLKKKLEILKYKKWQQRIRVQTSYERNLVQATHELNRIAHQLGVPKSCMDEA 171
Query: 132 NNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGRCFKLI 191
++KQV +KGRS +AI +ACL++ACR +G+PR+ EI ++ +KEI RCF+LI
Sbjct: 172 LAVYKQVLKSGLVKGRSVEAIIAACLHMACRMQGMPRSLDEISQYTRAPRKEIARCFRLI 231
Query: 192 LKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAI 251
+ L + L ++ + L LP + K A + +A + + G+ P +AAAA+
Sbjct: 232 ARELRIRLPLSDPRQYVPKIVEQLKLPGDIAKEAIRVLEEAKDKGLTAGKDPAGLAAAAV 291
Query: 252 YMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
Y+AS + R+QKEI A V EVT+R YK
Sbjct: 292 YIASLLKGEVRTQKEIAQAAQVTEVTVRNRYK 323
>gi|116753584|ref|YP_842702.1| transcription initiation factor IIB [Methanosaeta thermophila PT]
gi|121694369|sp|A0B5T8.1|TF2B_METTP RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|116665035|gb|ABK14062.1| Transcription initiation factor IIB (TFIIB) [Methanosaeta
thermophila PT]
Length = 337
Score = 174 bits (440), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 113/290 (38%), Positives = 171/290 (58%), Gaps = 15/290 (5%)
Query: 6 VCCYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPEN 65
V C E L+ DY + +CSECGLV+ + ID G EWR F +++ + SRVG P
Sbjct: 39 VECPECGSRALVRDYERAELVCSECGLVIDENFIDQGPEWRAFDHDQR-MKRSRVGAPMT 97
Query: 66 PLLNGSDLSTMIGPGRGDA---------SFDGFGMSKYQNR-RTMNSSDRALLNAIREIN 115
++ LSTMI D+ + + K+Q R R N+++R L A+ E++
Sbjct: 98 YTIHDKGLSTMIDWRNRDSYGKTISSKNRAQLYRLRKWQRRIRVSNATERNLAFALSELD 157
Query: 116 SMADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICA 175
MA + L++ + + A ++++ + ++GRS + +A+A LY ACRQ VPRT EI
Sbjct: 158 RMASALGLSRNVRETAAVIYRRAVEKNLIRGRSIEGVAAAALYAACRQCNVPRTLDEIAE 217
Query: 176 VSKISKKEIGRCFKLILKALETSVDLITTG--DFMSRFCSNLSLPNMVQKAATHIARKAV 233
VS++S+KEIGR ++ + + L S+ L+ T D++ RFCS L+L VQ I R+A
Sbjct: 218 VSRVSRKEIGRTYRFVSREL--SLKLMPTSPIDYIPRFCSGLNLKGDVQAKGIEILRQAA 275
Query: 234 ELDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
E ++ GR P VAAAAIY+AS +D+R+Q+E+ D+AGV EVTIR YK
Sbjct: 276 EKELTSGRGPTGVAAAAIYIASILCNDRRTQREVADVAGVTEVTIRNRYK 325
Score = 38.9 bits (89), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 56/103 (54%), Gaps = 6/103 (5%)
Query: 208 MSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEI 267
+ R S L L V++ A I R+AVE +++ GRS VAAAA+Y A + + R+ EI
Sbjct: 156 LDRMASALGLSRNVRETAAVIYRRAVEKNLIRGRSIEGVAAAALYAACRQCNVPRTLDEI 215
Query: 268 GDIAGVAEVTIRQSYKLMYPHAS-KLFPQDFVFHTPIHELPQL 309
+++ V+ I ++Y+ + S KL P +PI +P+
Sbjct: 216 AEVSRVSRKEIGRTYRFVSRELSLKLMPT-----SPIDYIPRF 253
>gi|307106611|gb|EFN54856.1| hypothetical protein CHLNCDRAFT_24273 [Chlorella variabilis]
Length = 333
Score = 173 bits (439), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 113/310 (36%), Positives = 172/310 (55%), Gaps = 26/310 (8%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNE--KSGVDPSRVGGPENPLLNGSDL 73
+ED+ +GD +C CG+VV VID SEWRTF+++ G DP+RVGGP N LL+ +
Sbjct: 24 FVEDHASGDLVCRNCGVVVEAHVIDERSEWRTFADKVHSGGSDPNRVGGPVNHLLSDGGM 83
Query: 74 STMIGPGRG-DASF--DGFGMSKYQNRRTMNSSDRALLNAIREINSMADRINLTKTIVDR 130
STMIG G+G D + + G + T +DRA++ A REI + + L T+ +
Sbjct: 84 STMIGGGKGVDHALVREAGGCWPAGDGVT---TDRAVIAAFREIGKICAAMKLLDTVKKQ 140
Query: 131 ANNLFKQVHD-GKNLKGRSNDAIASACLYIACRQEGVPRTFKEICA-VSKISKKEIGRCF 188
A +KQ +D K++KG+S A+ +A +++ACR G PRTFKEICA V + S KEIGR +
Sbjct: 141 AEEFYKQAYDNAKSIKGKSQAAVLAAIVFLACRHTGNPRTFKEICAVVPQASVKEIGRIY 200
Query: 189 KLILKALETSVDLITT-------GDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGR 241
K +++ L+ L +M RF S LS+ ++ +A+ L ++P +
Sbjct: 201 KSVVRELKLEEALGNKQLEGSHPHSYMRRFMSQLSM-----TPKEYLWGEALALALLP-Q 254
Query: 242 SPISVAAAAIY-MASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKLFPQ--DFV 298
SP S+A +Y +A+ ++I GVA+ TIRQ Y+ ++PH L + F
Sbjct: 255 SPTSIAGTVVYIIANLPGKTSVPLQDICRTCGVADGTIRQIYREIHPHLKALIDKAGRFA 314
Query: 299 FHTPIHELPQ 308
H + LPQ
Sbjct: 315 SHADVERLPQ 324
>gi|375083122|ref|ZP_09730154.1| transcription initiation factor IIB [Thermococcus litoralis DSM
5473]
gi|374742208|gb|EHR78614.1| transcription initiation factor IIB [Thermococcus litoralis DSM
5473]
Length = 299
Score = 173 bits (439), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 97/291 (33%), Positives = 163/291 (56%), Gaps = 8/291 (2%)
Query: 1 MNINKVCCYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRV 60
M ++VC D + D G+ IC+ CG V+ + +ID+G EWR F + SR
Sbjct: 1 MTKHRVCPVCGSD-KFVYDPERGEVICANCGFVIQENMIDMGPEWRAFDASQRE-KRSRT 58
Query: 61 GGPENPLLNGSDLSTMIGPGR---GDASFDGFGMSKYQNR-RTMNSSDRALLNAIREINS 116
G PE+ LL+ LST IG R G + + K+Q+R R ++++R L A+ E++
Sbjct: 59 GAPESILLHDKGLSTDIGYDRNVKGLMREKIYRLRKWQSRLRVSDAAERNLAFALSELDR 118
Query: 117 MADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAV 176
+ R+NL K + + A L+++ ++G+S +++ +AC+Y ACR +PRT EI +
Sbjct: 119 LGARLNLPKHVEEEAARLYREAVRKGLIRGKSIESVIAACVYAACRLLKIPRTLDEIADI 178
Query: 177 SKISKKEIGRCFKLILKALETSVD--LITTGDFMSRFCSNLSLPNMVQKAATHIARKAVE 234
+K+ KKEIGR F+ I + L + + D++++F L L ++ A + KA
Sbjct: 179 AKVDKKEIGRSFRFIARNLNLTPKKLFVKPTDYVNKFADELGLSERTRRRAIELLEKAYG 238
Query: 235 LDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLM 285
+ + G+SP + AAA+Y+A +KR+Q+E+ ++A V EVT+R YK M
Sbjct: 239 MGLTSGKSPAGLVAAALYIAGLLEGEKRTQREVAEVARVTEVTVRNRYKEM 289
Score = 40.0 bits (92), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 46/88 (52%)
Query: 114 INSMADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEI 173
+N AD + L++ RA L ++ + G+S + +A LYIA EG RT +E+
Sbjct: 212 VNKFADELGLSERTRRRAIELLEKAYGMGLTSGKSPAGLVAAALYIAGLLEGEKRTQREV 271
Query: 174 CAVSKISKKEIGRCFKLILKALETSVDL 201
V+++++ + +K +++ L + L
Sbjct: 272 AEVARVTEVTVRNRYKEMVEKLGLKLPL 299
>gi|378732425|gb|EHY58884.1| transcription initiation factor TFIIB [Exophiala dermatitidis
NIH/UT8656]
Length = 365
Score = 173 bits (439), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 104/329 (31%), Positives = 171/329 (51%), Gaps = 30/329 (9%)
Query: 1 MNINKVC--CYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTF-SNEKSGVDP 57
+N + +C C + P LIE+ D IC+ CG+V+ +R+I SEWRTF S+E G DP
Sbjct: 25 LNTHLICPDCKQVP-PDLIEE--NADTICANCGMVLAERLISYESEWRTFNSDEGKGEDP 81
Query: 58 SRVGGPENPLLNGSDLSTMIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSM 117
+RVG +N LL ++ TMIG G + S + + K Q + N +D+AL A ++ +
Sbjct: 82 NRVGEADNELLLTNNAGTMIGGGGPNVSRETRKLKKAQAMQLENKADKALQAAYAQVEAW 141
Query: 118 ADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVS 177
++ LT + A FK+V++ L+G+ D I + CL+IACRQ PR+F EI ++
Sbjct: 142 GEKAKLTAPVKMAAKMYFKRVYEANALRGKQTDVILAGCLFIACRQLKTPRSFTEIFGLT 201
Query: 178 KISKKEIGRCF----KLILKALETSVDLITTG--------------------DFMSRFCS 213
+ KKEIGR + K + KA ++ + D R+C+
Sbjct: 202 SVPKKEIGRAYKNLEKFLTKAAHDNIQAVEGSGGIANRDVLEYRGTQSTKPEDLCGRYCN 261
Query: 214 NLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGV 273
+ L V+ A +A+K ++ + GRSP+S AAA + AS + K+I ++AGV
Sbjct: 262 MVGLNFRVESIAKALAKKIPTIEGLAGRSPLSNAAACTFFASWLIGFGKPSKQISEVAGV 321
Query: 274 AEVTIRQSYKLMYPHASKLFPQDFVFHTP 302
++ TI+ +Y+ + +L ++ P
Sbjct: 322 SDATIKHAYRYLLQEKERLVEDSWLGEQP 350
>gi|58268740|ref|XP_571526.1| transcription initiation factor iib [Cryptococcus neoformans var.
neoformans JEC21]
gi|57227761|gb|AAW44219.1| transcription initiation factor iib, putative [Cryptococcus
neoformans var. neoformans JEC21]
Length = 447
Score = 173 bits (439), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 108/315 (34%), Positives = 173/315 (54%), Gaps = 29/315 (9%)
Query: 1 MNINKVCCYEHPDAP-LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSR 59
+NI ++C D P ++E+Y GD +C++CG ++GDR++D SEWRTF+ +++G DPSR
Sbjct: 98 LNIKQICPNCRTDPPNIVEEYAKGDLVCADCGTILGDRIVDTRSEWRTFAGDENGDDPSR 157
Query: 60 VGGPENPLLNGSDLSTMIG--PGRGDASFDGFGMSKYQNRRTMNS------SDRALLNAI 111
VG NPLL + L TMI GR + D +++ Q R S S A L+A+
Sbjct: 158 VGDAGNPLLGSNHLDTMISHKDGRTGIARD---LNRAQARANTLSNGIYGKSSVAQLSAV 214
Query: 112 -REINSMADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTF 170
I D + L + + +RA +++K V + + +KG++ A+ +AC+ ACR V RTF
Sbjct: 215 FSRIGEKCDAMQLPRGVRERAQHVYKIVDEARAIKGKNEPAVIAACIVYACRDAKVHRTF 274
Query: 171 KEICAVSKISKKEIGRCFKLILKALETS------VDLITTGD-------FMSRFCSNLSL 217
+E+C KISKKE+G+ F + +++S V + + + + RF + L L
Sbjct: 275 QEVCKALKISKKELGQVFNHVKSVVQSSSAQGSMVSVHGSNNAQESAEGLLGRFANYLDL 334
Query: 218 PNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVT 277
N V + HIA +AV + GRSP+S+AA +Y + K+I + GV+E T
Sbjct: 335 GNAVFNVSKHIAGEAVAKSAIDGRSPVSIAAGVLYFTCVLLGKSTTAKDISAMGGVSEST 394
Query: 278 IRQSYKLMYPHASKL 292
+ K++ ASKL
Sbjct: 395 TKLITKMV---ASKL 406
>gi|57641215|ref|YP_183693.1| transcription initiation factor IIB [Thermococcus kodakarensis
KOD1]
gi|73919861|sp|Q5JGN1.1|TF2B1_PYRKO RecName: Full=Transcription initiation factor IIB 1; Short=TFIIB 1
gi|57159539|dbj|BAD85469.1| transcription initiation factor IIB [Thermococcus kodakarensis
KOD1]
Length = 300
Score = 173 bits (438), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 99/277 (35%), Positives = 158/277 (57%), Gaps = 13/277 (4%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTF---SNEKSGVDPSRVGGPENPLLNGSD 72
I D G+ +C CG V+ + V+D G EWR F EK +RVG PE+ LL+
Sbjct: 15 FIYDPSRGEIVCKVCGYVIEENVVDEGPEWRAFDPGQREKR----ARVGAPESILLHDKG 70
Query: 73 LSTMIGPGR---GDASFDGFGMSKYQNR-RTMNSSDRALLNAIREINSMADRINLTKTIV 128
LST IG R G + + K+Q+R R ++++R L A+ E++ +A ++L K +
Sbjct: 71 LSTDIGIDRSLTGLMREKMYRLRKWQSRLRVSDAAERNLAFALSELDRLASNLSLPKHVE 130
Query: 129 DRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGRCF 188
+ A L+++ ++GRS +A+ +AC+Y ACR VPRT EI VS++ KKEIGR F
Sbjct: 131 EEAARLYREAVRKGLIRGRSIEAVIAACVYAACRLLKVPRTLDEIADVSRVDKKEIGRSF 190
Query: 189 KLILKALETSVD--LITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISV 246
+ I + L + + D++++F L L V++ A I +A + + G+SP +
Sbjct: 191 RFIARHLNLTPKKLFVKPTDYVNKFADELGLSEKVRRRAIEILEEAYQRGLTSGKSPAGL 250
Query: 247 AAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
AAA+Y+AS +KR+Q+E+ ++A V EVT+R YK
Sbjct: 251 VAAALYIASLMEGEKRTQREVAEVARVTEVTVRNRYK 287
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 54/97 (55%), Gaps = 6/97 (6%)
Query: 208 MSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEI 267
+ R SNLSLP V++ A + R+AV ++ GRS +V AA +Y A + R+ EI
Sbjct: 116 LDRLASNLSLPKHVEEEAARLYREAVRKGLIRGRSIEAVIAACVYAACRLLKVPRTLDEI 175
Query: 268 GDIAGVAEVTIRQSYKLMYPHAS----KLF--PQDFV 298
D++ V + I +S++ + H + KLF P D+V
Sbjct: 176 ADVSRVDKKEIGRSFRFIARHLNLTPKKLFVKPTDYV 212
Score = 43.9 bits (102), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 46/86 (53%)
Query: 114 INSMADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEI 173
+N AD + L++ + RA + ++ + G+S + +A LYIA EG RT +E+
Sbjct: 212 VNKFADELGLSEKVRRRAIEILEEAYQRGLTSGKSPAGLVAAALYIASLMEGEKRTQREV 271
Query: 174 CAVSKISKKEIGRCFKLILKALETSV 199
V+++++ + +K +++ L V
Sbjct: 272 AEVARVTEVTVRNRYKELVEKLNLKV 297
>gi|340623224|ref|YP_004741677.1| transcription initiation factor IIB [Methanococcus maripaludis X1]
gi|339903492|gb|AEK18934.1| transcription initiation factor IIB [Methanococcus maripaludis X1]
Length = 339
Score = 173 bits (438), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 105/283 (37%), Positives = 160/283 (56%), Gaps = 11/283 (3%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLST 75
+I+DY + +C CG V+ + DVG EWR F +E+ V SRVG P ++ LST
Sbjct: 51 IIKDYERAEIVCEMCGCVLQQNLFDVGPEWRAFDHEQR-VKRSRVGAPMTYTIHDKGLST 109
Query: 76 MIGPGRGDA-----SFDG----FGMSKYQNR-RTMNSSDRALLNAIREINSMADRINLTK 125
+I D+ S D + + K+Q R R ++S+R L A+ E++ +A ++ L +
Sbjct: 110 VIDWRNKDSYGKDISADKRAQLYRLRKWQRRIRVSDASERNLAFALSELDRIASKLGLPR 169
Query: 126 TIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIG 185
+ + L++ + ++GRS + +A+A LY ACR+ VPRT EI VS++ +KEIG
Sbjct: 170 NVRENVAVLYRGAVEKGLIRGRSIEGVAAAALYAACRRCKVPRTLDEIAEVSRVDRKEIG 229
Query: 186 RCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPIS 245
R ++ I + L + D++ RF S L LP V+ A I +KA E + GR P
Sbjct: 230 RTYRFISRELNIRLAPTNPVDYVPRFASELKLPGEVESKAISILQKAGERGLTSGRGPTG 289
Query: 246 VAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPH 288
VAAAAIY+AS +R+Q+E+ D+AGV EVTIR YK + H
Sbjct: 290 VAAAAIYIASVLQGTRRTQREVADVAGVTEVTIRNRYKELTEH 332
>gi|58268742|ref|XP_571527.1| transcription initiation factor iib [Cryptococcus neoformans var.
neoformans JEC21]
gi|57227762|gb|AAW44220.1| transcription initiation factor iib, putative [Cryptococcus
neoformans var. neoformans JEC21]
Length = 371
Score = 172 bits (437), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 108/315 (34%), Positives = 173/315 (54%), Gaps = 29/315 (9%)
Query: 1 MNINKVCCYEHPDAP-LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSR 59
+NI ++C D P ++E+Y GD +C++CG ++GDR++D SEWRTF+ +++G DPSR
Sbjct: 22 LNIKQICPNCRTDPPNIVEEYAKGDLVCADCGTILGDRIVDTRSEWRTFAGDENGDDPSR 81
Query: 60 VGGPENPLLNGSDLSTMIG--PGRGDASFDGFGMSKYQNRRTMNS------SDRALLNAI 111
VG NPLL + L TMI GR + D +++ Q R S S A L+A+
Sbjct: 82 VGDAGNPLLGSNHLDTMISHKDGRTGIARD---LNRAQARANTLSNGIYGKSSVAQLSAV 138
Query: 112 -REINSMADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTF 170
I D + L + + +RA +++K V + + +KG++ A+ +AC+ ACR V RTF
Sbjct: 139 FSRIGEKCDAMQLPRGVRERAQHVYKIVDEARAIKGKNEPAVIAACIVYACRDAKVHRTF 198
Query: 171 KEICAVSKISKKEIGRCFKLILKALETS------VDLITTGD-------FMSRFCSNLSL 217
+E+C KISKKE+G+ F + +++S V + + + + RF + L L
Sbjct: 199 QEVCKALKISKKELGQVFNHVKSVVQSSSAQGSMVSVHGSNNAQESAEGLLGRFANYLDL 258
Query: 218 PNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVT 277
N V + HIA +AV + GRSP+S+AA +Y + K+I + GV+E T
Sbjct: 259 GNAVFNVSKHIAGEAVAKSAIDGRSPVSIAAGVLYFTCVLLGKSTTAKDISAMGGVSEST 318
Query: 278 IRQSYKLMYPHASKL 292
+ K++ ASKL
Sbjct: 319 TKLITKMV---ASKL 330
>gi|134113140|ref|XP_774595.1| hypothetical protein CNBF2750 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50257239|gb|EAL19948.1| hypothetical protein CNBF2750 [Cryptococcus neoformans var.
neoformans B-3501A]
Length = 371
Score = 172 bits (437), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 108/315 (34%), Positives = 173/315 (54%), Gaps = 29/315 (9%)
Query: 1 MNINKVCCYEHPDAP-LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSR 59
+NI ++C D P ++E+Y GD +C++CG ++GDR++D SEWRTF+ +++G DPSR
Sbjct: 22 LNIKQICPNCRTDPPNIVEEYAKGDLVCADCGTILGDRIVDTRSEWRTFAGDENGDDPSR 81
Query: 60 VGGPENPLLNGSDLSTMIG--PGRGDASFDGFGMSKYQNRRTMNS------SDRALLNAI 111
VG NPLL + L TMI GR + D +++ Q R S S A L+A+
Sbjct: 82 VGDAGNPLLGSNHLDTMISHKDGRTGIARD---LNRAQARANTLSNGIYGKSSVAQLSAV 138
Query: 112 -REINSMADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTF 170
I D + L + + +RA +++K V + + +KG++ A+ +AC+ ACR V RTF
Sbjct: 139 FSRIGEKCDAMQLPRGVRERAQHVYKIVDEARAIKGKNEPAVIAACIVYACRDAKVHRTF 198
Query: 171 KEICAVSKISKKEIGRCFKLILKALETS------VDLITTGD-------FMSRFCSNLSL 217
+E+C KISKKE+G+ F + +++S V + + + + RF + L L
Sbjct: 199 QEVCKALKISKKELGQVFNHVKSVVQSSSAQGSMVSVHGSNNAQESAEGLLGRFANYLDL 258
Query: 218 PNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVT 277
N V + HIA +AV + GRSP+S+AA +Y + K+I + GV+E T
Sbjct: 259 GNAVFNVSKHIAGEAVAKSAIDGRSPVSIAAGVLYFTCVLLGKSTTAKDISAMGGVSEST 318
Query: 278 IRQSYKLMYPHASKL 292
+ K++ ASKL
Sbjct: 319 TKLITKMV---ASKL 330
>gi|405121333|gb|AFR96102.1| transcription initiation factor iib [Cryptococcus neoformans var.
grubii H99]
Length = 371
Score = 172 bits (437), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 110/333 (33%), Positives = 173/333 (51%), Gaps = 41/333 (12%)
Query: 1 MNINKVCCYEHPDAP-LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSR 59
+NI ++C D P ++E+Y GD +C++CG ++GDR++D SEWRTF+ +++G DPSR
Sbjct: 22 LNIKQICPNCRTDPPNIVEEYAKGDLVCADCGTILGDRIVDTRSEWRTFAGDENGDDPSR 81
Query: 60 VGGPENPLLNGSDLSTMIG--PGRGDASFDGFGMSKYQNRRTMNS------SDRALLNAI 111
VG NPLL + L TMI GR + D +++ Q R S S A L+A+
Sbjct: 82 VGDAGNPLLGSNHLDTMISHKDGRTGIARD---LNRAQARANTLSNGIYGKSSVAQLSAV 138
Query: 112 -REINSMADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTF 170
I D + L + + +RA +++K V + + +KG++ A+ +AC+ ACR V RTF
Sbjct: 139 FSRIGEKCDAMLLPRGVRERAQHVYKIVDEARAIKGKNEPAVIAACIVYACRDAKVHRTF 198
Query: 171 KEICAVSKISKKEIGRCFKLILKALETS------VDLITTGD-------FMSRFCSNLSL 217
+E+C KISKKE+G+ F + +++S V + + + + RF + L L
Sbjct: 199 QEVCKALKISKKELGQVFNQVKSVVQSSSAQGSMVSVHGSNNAQESAEGLLGRFANYLDL 258
Query: 218 PNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVT 277
N V A+ HIA +AV + GRSP+S+AA +Y + K+I + GV+E T
Sbjct: 259 GNAVFNASKHIAGEAVAKSAIDGRSPVSIAAGVLYFTCVLLGKSTTAKDISAMGGVSEST 318
Query: 278 ---------------IRQSYKLMYPHASKLFPQ 295
IR +K YP Q
Sbjct: 319 TKLITKMVANKLDDVIRPEWKTEYPDGYAALAQ 351
>gi|357128609|ref|XP_003565964.1| PREDICTED: transcription initiation factor IIB-2-like [Brachypodium
distachyon]
Length = 338
Score = 172 bits (437), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 113/317 (35%), Positives = 172/317 (54%), Gaps = 27/317 (8%)
Query: 4 NKVCCYE-HPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSG---VDPSR 59
+V C + H ++ D+ GD IC++CG+V+ + ID G EWR F ++ +G DP R
Sbjct: 8 ERVYCTDCHRATEVVLDHGTGDTICTDCGMVLDEHYIDEGQEWRVFGDDSAGGEDRDPCR 67
Query: 60 VGGPENPLLNGSDL-STMI----GPGRGDASFDGFGMSKYQNRRTMN----SSDRALLNA 110
VG +P L G L ST I S + + R ++ + D AL++A
Sbjct: 68 VGSAGDPFLRGDGLLSTCIVHSAKSKSRSRSGSDPAAALHLPRMMLDVGGPAPDTALVDA 127
Query: 111 IREINSMADRINLTKTIVDRANNLFKQVHDGKNLK--GRSNDAIASACLYIACRQEGVPR 168
R I MADR+ L TI D A FK++ + K RS DA+ +ACLY+ACR+EG+PR
Sbjct: 128 FRGIADMADRLGLVATIRDSAKQTFKRLEEAKGCPRGARSRDAVYAACLYVACRKEGMPR 187
Query: 169 TFKEICAVSK---ISKKEIGRCFKLILKALETS------VDLITTGDFMSRFCSNLSLPN 219
T+KE+ +V+ ++K+IG+ I K L + ++ ++ RFCS L L N
Sbjct: 188 TYKELASVTAQGAAARKDIGKMTTHIKKLLGEEDGQVLDIGVVRATSYLRRFCSILGLGN 247
Query: 220 MVQKAATH-IARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTI 278
AA ++R +ELD+ R+P S+AAA IYM Q + +RS K++ GVAE TI
Sbjct: 248 QQMLAAQEAVSRLEMELDVR--RNPESIAAAIIYMVVQRAGARRSVKDVSAATGVAEGTI 305
Query: 279 RQSYKLMYPHASKLFPQ 295
++++K + PH LF +
Sbjct: 306 KEAHKDLVPHTELLFAE 322
>gi|315230862|ref|YP_004071298.1| transcription initiation factor B [Thermococcus barophilus MP]
gi|315183890|gb|ADT84075.1| transcription initiation factor B [Thermococcus barophilus MP]
Length = 299
Score = 172 bits (436), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 92/274 (33%), Positives = 158/274 (57%), Gaps = 7/274 (2%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLST 75
I D G+ +CS+CG V+ + ++D+G EWR F + SR G PE+ LL+ LST
Sbjct: 15 FIYDPEHGEIVCSKCGFVIEENIVDMGPEWRAFDASQRE-KRSRTGAPESILLHDKGLST 73
Query: 76 MIGPGR---GDASFDGFGMSKYQNR-RTMNSSDRALLNAIREINSMADRINLTKTIVDRA 131
IG R G + + K+Q+R R ++++R L A+ E++ +A ++ L K + + A
Sbjct: 74 DIGSDRNITGLMREKMYRLRKWQSRLRVSDAAERNLAFALSELDRIASQLKLPKHVEEEA 133
Query: 132 NNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGRCFKLI 191
L+++ ++GRS +++ +AC+Y ACR +PRT EI ++++ KKEIGR F+ I
Sbjct: 134 ARLYREAVRRGLIRGRSIESVIAACVYAACRLLKIPRTLDEIADIARVDKKEIGRSFRFI 193
Query: 192 LKALETSVD--LITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAA 249
+ L + + D++++F L L V++ A + +A + G+SP + AA
Sbjct: 194 ARNLNLTPKKLFVKPTDYVNKFADELGLSEKVRRRAIELLEEAYNRGLTSGKSPAGLVAA 253
Query: 250 AIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
A+Y+AS +KR+Q+E+ ++A V EVT+R YK
Sbjct: 254 ALYIASLLEGEKRTQREVAEVARVTEVTVRNRYK 287
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 52/97 (53%), Gaps = 6/97 (6%)
Query: 208 MSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEI 267
+ R S L LP V++ A + R+AV ++ GRS SV AA +Y A + R+ EI
Sbjct: 116 LDRIASQLKLPKHVEEEAARLYREAVRRGLIRGRSIESVIAACVYAACRLLKIPRTLDEI 175
Query: 268 GDIAGVAEVTIRQSYKLMYPHAS----KLF--PQDFV 298
DIA V + I +S++ + + + KLF P D+V
Sbjct: 176 ADIARVDKKEIGRSFRFIARNLNLTPKKLFVKPTDYV 212
Score = 44.3 bits (103), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 48/88 (54%)
Query: 114 INSMADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEI 173
+N AD + L++ + RA L ++ ++ G+S + +A LYIA EG RT +E+
Sbjct: 212 VNKFADELGLSEKVRRRAIELLEEAYNRGLTSGKSPAGLVAAALYIASLLEGEKRTQREV 271
Query: 174 CAVSKISKKEIGRCFKLILKALETSVDL 201
V+++++ + +K +++ L + L
Sbjct: 272 AEVARVTEVTVRNRYKELVEKLGLKITL 299
>gi|256810972|ref|YP_003128341.1| transcription initiation factor IIB [Methanocaldococcus fervens
AG86]
gi|256794172|gb|ACV24841.1| Transcription factor TFIIB cyclin-related [Methanocaldococcus
fervens AG86]
Length = 331
Score = 172 bits (436), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 91/283 (32%), Positives = 158/283 (55%), Gaps = 11/283 (3%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLST 75
+++DY + +C++CG V+ + + D+G EWR F +E+ + RVG P ++ LST
Sbjct: 43 VVKDYERAEIVCAKCGCVIKENLFDIGPEWRAFDHEQK-IKRCRVGAPMTYTIHDKGLST 101
Query: 76 MIGPGRGDA---------SFDGFGMSKYQNR-RTMNSSDRALLNAIREINSMADRINLTK 125
+I D+ + + K+Q R R ++++R L A+ E++ + ++ L +
Sbjct: 102 VIDWRNKDSYGKDLSANKRAQLYRLRKWQRRIRVSDAAERNLAFALSELDRITSKLGLPR 161
Query: 126 TIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIG 185
+ + A +++ + ++GRS + + +A +Y ACR+ VPRT EI S++ +KEIG
Sbjct: 162 HVRENAAIIYRGAVEKGLIRGRSIEGVVAAAIYAACRRCRVPRTLDEIAEASRVDRKEIG 221
Query: 186 RCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPIS 245
R ++ + + L + D++ RF S L LP V+ A I ++A E + GR P
Sbjct: 222 RTYRFLARELGIKLTPTNPIDYVPRFASELGLPGEVESKAIQILQQAAEKGLTSGRGPTG 281
Query: 246 VAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPH 288
VAAAAIY+AS +R+Q+E+ ++AGV EVTIR YK + H
Sbjct: 282 VAAAAIYIASVLLGCRRTQREVAEVAGVTEVTIRNRYKELTEH 324
>gi|134046665|ref|YP_001098150.1| transcription initiation factor IIB [Methanococcus maripaludis C5]
gi|189029855|sp|A4G0F2.1|TF2B_METM5 RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|132664290|gb|ABO35936.1| Transcription initiation factor IIB (TFIIB) [Methanococcus
maripaludis C5]
Length = 339
Score = 172 bits (435), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 105/283 (37%), Positives = 160/283 (56%), Gaps = 11/283 (3%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLST 75
+I+DY + +C CG V+ + DVG EWR F +E+ V SRVG P ++ LST
Sbjct: 51 IIKDYERAEIVCEMCGCVLQQNLFDVGPEWRAFDHEQR-VKRSRVGAPMTYTIHDKGLST 109
Query: 76 MIGPGRGDA-----SFDG----FGMSKYQNR-RTMNSSDRALLNAIREINSMADRINLTK 125
+I D+ S D + + K+Q R R ++S+R L A+ E++ +A ++ L +
Sbjct: 110 VIDWRNKDSYGKDISADKRAQLYRLRKWQRRIRVSDASERNLAFALSELDRIASKLGLPR 169
Query: 126 TIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIG 185
+ + A L++ + ++GRS + +A+A LY ACR+ VPRT EI VS++ +KEIG
Sbjct: 170 NVRENAAVLYRGAVEKGLIRGRSIEGVAAAALYAACRRCKVPRTLDEIAEVSRVDRKEIG 229
Query: 186 RCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPIS 245
R ++ I + L + D++ RF S L LP V+ A I +KA E + R P
Sbjct: 230 RTYRFISRELNIRLAPTNPVDYVPRFASELKLPGEVESKAISILQKAGEKGLTSSRGPTG 289
Query: 246 VAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPH 288
VAAAAIY+AS +R+Q+E+ D+AGV EVTIR YK + H
Sbjct: 290 VAAAAIYIASVLQGTRRTQREVADVAGVTEVTIRNRYKELTEH 332
>gi|348673371|gb|EGZ13190.1| hypothetical protein PHYSODRAFT_361176 [Phytophthora sojae]
Length = 308
Score = 172 bits (435), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 100/295 (33%), Positives = 168/295 (56%), Gaps = 11/295 (3%)
Query: 8 CYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDP---SRVGGPE 64
C E A ++ D+ AGD +C CG+++G+R+ID EWRTF+N+ G DP SRVG
Sbjct: 10 CRECGSADVVTDFSAGDVVCRSCGMILGERIIDDSPEWRTFANDDRGGDPAAKSRVGDVA 69
Query: 65 NPLLNGSDLST-MIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIRE----INSMAD 119
+ LN LST ++ + DG ++++R SSD A + ++ I +AD
Sbjct: 70 DARLNSLSLSTYLVDTKKSGGGADG--EPGHKHKRPNISSDSAKVRRMQRNMARIQEVAD 127
Query: 120 RINLTKTIVDRANNLFKQVH-DGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSK 178
++L K IV+ A +++ + G N++G +++A A L+IACR+ G R+ KE S
Sbjct: 128 YLSLPKNIVEIALDVYAEAEKQGVNMRGPERESMAVAVLFIACRKAGNARSLKEFEEASG 187
Query: 179 ISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIV 238
+ K+ IG+ F + + L+ V +T +++ RFCS L LPN Q A +A+KA L++
Sbjct: 188 VPKRRIGKSFMSLQRRLDLEVKQASTEEYVQRFCSRLGLPNKTQMIAHAVAKKADSLELS 247
Query: 239 PGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKLF 293
G+ P++VAA+ IY+ + ++ KRS +EI D+ + E ++++ K + LF
Sbjct: 248 NGQPPVAVAASVIYLVAAYTNSKRSIQEISDVTMIGEKSVKKVCKELNKSRVVLF 302
>gi|322370540|ref|ZP_08045098.1| Transcription factor TFIIB cyclin-related protein [Haladaptatus
paucihalophilus DX253]
gi|320549957|gb|EFW91613.1| Transcription factor TFIIB cyclin-related protein [Haladaptatus
paucihalophilus DX253]
Length = 328
Score = 172 bits (435), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 101/281 (35%), Positives = 158/281 (56%), Gaps = 13/281 (4%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTF-SNEKSGVDPSRVGGPENPLLNGSDLS 74
+I D G+ +C+ECGLVV + +D G EWR F S EK SRVG P +++ LS
Sbjct: 39 VISDEGRGETVCAECGLVVEEDSVDRGPEWRAFDSKEKD--QKSRVGAPTTKMMHDKGLS 96
Query: 75 TMIGPGRGDASFDGFG---MSKYQNRRTMN-------SSDRALLNAIREINSMADRINLT 124
T IG DA + G K Q RT N S +R L A+ EI+ MA + L
Sbjct: 97 TNIGWQDKDAYGNTLGSRQREKMQRLRTWNERFRTRDSKERNLKQALGEIDRMASALGLP 156
Query: 125 KTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEI 184
K + + A+ ++++ D L GRS + +A++ +Y A RQ GVPR+ E+ AVS+I + E
Sbjct: 157 KNVRETASVIYRRALDDDLLPGRSIEGVATSAVYAAARQTGVPRSLDEVAAVSRIDEMEF 216
Query: 185 GRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPI 244
R ++ I++ L + ++SRF S+L + + ++ A + + A E + G+SP+
Sbjct: 217 KRTYRYIVRELGLEIQPADPLSYVSRFASDLDISDESERRAKDLLKTAKEQGVHSGKSPV 276
Query: 245 SVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLM 285
+AAAA+Y S S++K +Q E+ D+A V+EVTIR Y+ +
Sbjct: 277 GLAAAAVYAGSLLSNEKVTQSEVSDVANVSEVTIRNRYQEL 317
>gi|409095301|ref|ZP_11215325.1| transcription initiation factor IIB [Thermococcus zilligii AN1]
Length = 300
Score = 171 bits (434), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 96/277 (34%), Positives = 157/277 (56%), Gaps = 13/277 (4%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTF---SNEKSGVDPSRVGGPENPLLNGSD 72
I D G+ +C++CG VV + V+D G EWR F EK +RVG PE+ LL+
Sbjct: 15 FIYDPSRGEIVCAKCGYVVEENVVDEGPEWRAFDPGQREKR----ARVGAPESILLHDKG 70
Query: 73 LSTMIGPGR---GDASFDGFGMSKYQNR-RTMNSSDRALLNAIREINSMADRINLTKTIV 128
LST IG R G + + K+Q+R R ++++R L A+ E++ +A + L + +
Sbjct: 71 LSTDIGIDRSVTGLMREKMYRLRKWQSRLRVSDAAERNLAFALSELDRLASHLALPRHVE 130
Query: 129 DRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGRCF 188
+ A L+++ ++GRS +++ +AC+Y ACR +PRT EI VSK+ KKEIGR F
Sbjct: 131 EEAARLYREAVRKGLIRGRSIESVIAACVYAACRLLKIPRTLDEIAEVSKVDKKEIGRSF 190
Query: 189 KLILKALETSVD--LITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISV 246
+ I + L + + D++++F L L V+K A + +A + G+SP +
Sbjct: 191 RFIARHLNLTPKKLFVKPSDYVNKFADELGLSEKVRKRAIELLEEAYNRGLTSGKSPAGL 250
Query: 247 AAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
AAA+Y+A ++R+Q+E+ ++A V EVT+R YK
Sbjct: 251 VAAALYIAGLMEEERRTQREVAEVARVTEVTVRNRYK 287
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 54/97 (55%), Gaps = 6/97 (6%)
Query: 208 MSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEI 267
+ R S+L+LP V++ A + R+AV ++ GRS SV AA +Y A + R+ EI
Sbjct: 116 LDRLASHLALPRHVEEEAARLYREAVRKGLIRGRSIESVIAACVYAACRLLKIPRTLDEI 175
Query: 268 GDIAGVAEVTIRQSYKLMYPHAS----KLF--PQDFV 298
+++ V + I +S++ + H + KLF P D+V
Sbjct: 176 AEVSKVDKKEIGRSFRFIARHLNLTPKKLFVKPSDYV 212
Score = 42.7 bits (99), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 47/88 (53%)
Query: 114 INSMADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEI 173
+N AD + L++ + RA L ++ ++ G+S + +A LYIA E RT +E+
Sbjct: 212 VNKFADELGLSEKVRKRAIELLEEAYNRGLTSGKSPAGLVAAALYIAGLMEEERRTQREV 271
Query: 174 CAVSKISKKEIGRCFKLILKALETSVDL 201
V+++++ + +K +++ L V L
Sbjct: 272 AEVARVTEVTVRNRYKELVEKLNLKVPL 299
>gi|407465001|ref|YP_006775883.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus sp. AR2]
gi|407048189|gb|AFS82941.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus sp. AR2]
Length = 303
Score = 171 bits (433), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 93/282 (32%), Positives = 159/282 (56%), Gaps = 12/282 (4%)
Query: 8 CYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPL 67
C D ++ D G+ CS+CGLVV D++ D G+EWR+FSNE+ + +R G +
Sbjct: 12 CPSCGDKKMVTDQTTGELFCSKCGLVVTDKIADTGAEWRSFSNEEG--NKARTGAGTSLT 69
Query: 68 LNGSDLSTMIGPGRGDAS---FDGFGMSKYQNRRTMNS-------SDRALLNAIREINSM 117
++ LST+IG DA+ S + RT +S +DR L A+ E++ +
Sbjct: 70 MHDMGLSTVIGAANKDATGKPLSASVKSSIERLRTWDSRSQAHSSADRNLRQALNEMDKL 129
Query: 118 ADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVS 177
D++ LT ++++A ++++ + K ++GRS + +ACLY +CR PRT +I
Sbjct: 130 KDKLALTDAVIEKAAYIYRKAMEKKLVRGRSIQGLVAACLYASCRNTETPRTLDDIAKGI 189
Query: 178 KISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDI 237
I +K++ RC++LI + LE + ++ +SR S L ++ A I +A E+ +
Sbjct: 190 NIRRKDVARCYRLIFRELELKMPVVDPVKGVSRIASIAELSEKSKRKAIAILNQAKEIGM 249
Query: 238 VPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIR 279
V G+ P+ +AAAA+Y+A ++ + +SQK+I +GV EVTIR
Sbjct: 250 VAGKDPMGIAAAALYLACISTGEVKSQKDISIASGVTEVTIR 291
>gi|297619914|ref|YP_003708019.1| transcription factor TFIIB cyclin-like protein [Methanococcus
voltae A3]
gi|297378891|gb|ADI37046.1| Transcription factor TFIIB cyclin-related protein [Methanococcus
voltae A3]
Length = 337
Score = 171 bits (433), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 105/283 (37%), Positives = 160/283 (56%), Gaps = 11/283 (3%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLST 75
+I+DY + IC CG V+ + DVG EWR F +E+ V SRVG P ++ LST
Sbjct: 49 IIKDYERAEIICEVCGCVLQQNLFDVGPEWRAFDHEQR-VKRSRVGAPMTYTIHDKGLST 107
Query: 76 MIGPGRGDA-----SFDG----FGMSKYQNR-RTMNSSDRALLNAIREINSMADRINLTK 125
+I D+ S D + + K+Q R R ++S+R L A+ E++ +A ++ L +
Sbjct: 108 VIDWRNKDSYGKDISADKRAQLYRLRKWQRRIRVSDASERNLAFALSELDRIASKLGLPR 167
Query: 126 TIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIG 185
+ + A L++ + ++GRS + +A+A LY ACR+ VPRT EI VS++ +KEIG
Sbjct: 168 NVRENAAVLYRGAVEKGLIRGRSIEGVAAAALYAACRRCKVPRTLDEIAEVSRVDRKEIG 227
Query: 186 RCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPIS 245
R ++ I + L + D++ RF S L LP V+ A I + A + + GR P
Sbjct: 228 RTYRFISRELNIRLAPTNPVDYVPRFASELKLPGEVESKAISILKDAGKKGLTSGRGPTG 287
Query: 246 VAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPH 288
VAAAAIY+AS +R+Q+E+ D+AGV EVTIR YK + H
Sbjct: 288 VAAAAIYIASVLQGTRRTQREVADVAGVTEVTIRNRYKELTEH 330
>gi|390961643|ref|YP_006425477.1| transcription initiation factor IIB [Thermococcus sp. CL1]
gi|390519951|gb|AFL95683.1| transcription initiation factor IIB [Thermococcus sp. CL1]
Length = 298
Score = 171 bits (433), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 97/278 (34%), Positives = 160/278 (57%), Gaps = 11/278 (3%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLST 75
L D R G+ +CS CG VV V+D G EWR F ++ +R G P +++ LST
Sbjct: 10 LFYDPRRGEIVCSVCGYVVQQNVVDEGPEWRAFDPDQRA-KRARTGAPMTLMIHDKGLST 68
Query: 76 MIGPGRGDASFDGF-GMSK--------YQNRRTMN-SSDRALLNAIREINSMADRINLTK 125
I D + GM + +Q R +N +++R L A+ E++ MA ++ L +
Sbjct: 69 DIDWRDKDIHGNQITGMYRTKMRRLRMWQRRMRINDAAERNLAFALSELDRMAAQMRLPR 128
Query: 126 TIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIG 185
+ + A +L+++ K ++GRS + + SA LY ACR EG+PRT EI AVSK++KKEIG
Sbjct: 129 RVKEVAASLYRKAVMKKLIRGRSIEGMVSAALYAACRMEGIPRTLDEIAAVSKVTKKEIG 188
Query: 186 RCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPIS 245
R ++ + + L ++ + +++ RF L++ +K A I R+A++ I G+ P
Sbjct: 189 RSYRFLARGLNLNLRPTSPIEYVDRFGDALNVSARTKKRAKEILREAIKRGITSGKGPTG 248
Query: 246 VAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
+AAAA+Y+AS +K++Q+E+ ++A V EVT+R YK
Sbjct: 249 LAAAALYVASLLEGEKKTQREVAEVAHVTEVTVRNRYK 286
Score = 43.9 bits (102), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 42/78 (53%)
Query: 208 MSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEI 267
+ R + + LP V++ A + RKAV ++ GRS + +AA+Y A + R+ EI
Sbjct: 117 LDRMAAQMRLPRRVKEVAASLYRKAVMKKLIRGRSIEGMVSAALYAACRMEGIPRTLDEI 176
Query: 268 GDIAGVAEVTIRQSYKLM 285
++ V + I +SY+ +
Sbjct: 177 AAVSKVTKKEIGRSYRFL 194
>gi|326427942|gb|EGD73512.1| hypothetical protein PTSG_05216 [Salpingoeca sp. ATCC 50818]
Length = 370
Score = 171 bits (433), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 118/301 (39%), Positives = 176/301 (58%), Gaps = 9/301 (2%)
Query: 3 INKVCCYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSN---EKSGVDPSR 59
+ +V C H AP++EDYRAGD +CSECGLVVGDRV+DVGSEWR+F N +K D SR
Sbjct: 20 VERVTCPVHKHAPVVEDYRAGDMVCSECGLVVGDRVVDVGSEWRSFGNSDKKKDNKDRSR 79
Query: 60 VGGPENPLLNGSD-LSTMIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMA 118
VG E+ LL G L+ P +A ++Q+R + S R L + +I ++A
Sbjct: 80 VGLEEDVLLEGDQGLTISAIPNCPNADVPWM---RWQSRMGPSGSTRTLKSVYGKIANLA 136
Query: 119 DRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSK 178
+++LT +V A +FK+V + +K RS+D+ A+A +YIACR GV R +KEIC +
Sbjct: 137 SKLSLTDQVVTTAKAIFKEVEETGAVKTRSHDSCAAASVYIACRNLGVSRPYKEICRAAD 196
Query: 179 ISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIV 238
+ KEIGR ++ I A++T+V + + R+ S L L +V+KAAT+I +L ++
Sbjct: 197 KTPKEIGRVYRKIRSAIKTAVKSSNPAENLGRYISRLGLEFVVRKAATYILEIGGKLSVL 256
Query: 239 PGRSPISVAAAAIYMASQAS--SDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKLFPQD 296
GR P + AAAA+ +A A S + + V+E I+ +YK +YP LFP +
Sbjct: 257 EGRQPTTKAAAALLLAINALGFSAEAPLPAVSRATAVSESAIKDAYKELYPFRQYLFPAE 316
Query: 297 F 297
Sbjct: 317 L 317
>gi|212224249|ref|YP_002307485.1| transcription initiation factor IIB [Thermococcus onnurineus NA1]
gi|212009206|gb|ACJ16588.1| transcription initiation factor IIB [Thermococcus onnurineus NA1]
Length = 299
Score = 171 bits (433), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 93/267 (34%), Positives = 155/267 (58%), Gaps = 7/267 (2%)
Query: 23 GDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLSTMIGPGR- 81
G+ +C CG V+ + VID+G EWR F + +RVG PE+ LL+ LST IG R
Sbjct: 22 GEVVCKVCGYVIEENVIDMGPEWRAFDASQRE-KRARVGAPESILLHDKGLSTDIGIDRN 80
Query: 82 --GDASFDGFGMSKYQNR-RTMNSSDRALLNAIREINSMADRINLTKTIVDRANNLFKQV 138
G + + K+Q+R R ++++R L A+ E++ +A ++ L + + + A L+++
Sbjct: 81 LSGLMREKMYRLRKWQSRLRVSDAAERNLAFALSELDRIASQLKLPRHVEEEAARLYREA 140
Query: 139 HDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGRCFKLILKALETS 198
++GRS +++ +AC+Y ACR VPRT EI +S++ KKEIGR F+ I + L +
Sbjct: 141 VRKGLIRGRSIESVIAACVYAACRLLKVPRTLDEIADISRVDKKEIGRSFRFIARNLNLT 200
Query: 199 VD--LITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQ 256
+ D++++F L L V++ A I +A E + G+SP + AAA+Y+A
Sbjct: 201 PKKLFVKPTDYVNKFADELGLSEKVRRRAIAILEEAYEKGLTSGKSPAGLVAAALYIAGL 260
Query: 257 ASSDKRSQKEIGDIAGVAEVTIRQSYK 283
+KR+Q+E+ ++A V EVT+R YK
Sbjct: 261 LEDEKRTQREVAEVARVTEVTVRNRYK 287
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 52/97 (53%), Gaps = 6/97 (6%)
Query: 208 MSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEI 267
+ R S L LP V++ A + R+AV ++ GRS SV AA +Y A + R+ EI
Sbjct: 116 LDRIASQLKLPRHVEEEAARLYREAVRKGLIRGRSIESVIAACVYAACRLLKVPRTLDEI 175
Query: 268 GDIAGVAEVTIRQSYKLMYPHAS----KLF--PQDFV 298
DI+ V + I +S++ + + + KLF P D+V
Sbjct: 176 ADISRVDKKEIGRSFRFIARNLNLTPKKLFVKPTDYV 212
Score = 39.3 bits (90), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/86 (23%), Positives = 46/86 (53%)
Query: 114 INSMADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEI 173
+N AD + L++ + RA + ++ ++ G+S + +A LYIA E RT +E+
Sbjct: 212 VNKFADELGLSEKVRRRAIAILEEAYEKGLTSGKSPAGLVAAALYIAGLLEDEKRTQREV 271
Query: 174 CAVSKISKKEIGRCFKLILKALETSV 199
V+++++ + +K +++ L +
Sbjct: 272 AEVARVTEVTVRNRYKELVEKLNLKI 297
>gi|14195251|sp|Q9P9I7.1|TF2B_METTL RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|6735522|emb|CAB69073.1| archaeal transcription factor B [Methanothermococcus
thermolithotrophicus]
Length = 339
Score = 171 bits (432), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 105/283 (37%), Positives = 160/283 (56%), Gaps = 11/283 (3%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLST 75
+I+DY + +C CG V+ + DVG EWR F +E+ V SRVG P ++ LST
Sbjct: 51 IIKDYERAEIVCETCGCVLQQNLFDVGPEWRAFDHEQR-VKRSRVGPPMTYTIHDKGLST 109
Query: 76 MIGPGRGDA-----SFDG----FGMSKYQNR-RTMNSSDRALLNAIREINSMADRINLTK 125
+I D+ S D + + K+Q R R ++S+R L A+ E++ +A ++ L +
Sbjct: 110 VIDWRNKDSYGKDISADKRAQLYRLRKWQRRIRVSDASERNLAFALSELDRIASKLGLPR 169
Query: 126 TIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIG 185
+ + A L++ + ++GRS + +A+A LY ACR+ VPRT EI S++ +KEIG
Sbjct: 170 NVRENAAVLYRGAVEKGLIRGRSIEGVAAAALYAACRRCKVPRTLDEIAEGSRVDRKEIG 229
Query: 186 RCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPIS 245
R ++ I + L + D++ RF S L LP V+ A I +KA E + GR P
Sbjct: 230 RTYRFISRELNIRLTPTNPIDYVPRFASELKLPGEVESKAISILQKANEKGLTSGRGPTG 289
Query: 246 VAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPH 288
VAAAAIY+AS +R+Q+E+ D+AGV EVTIR YK + H
Sbjct: 290 VAAAAIYIASVLHGTRRTQREVADVAGVTEVTIRNRYKELTEH 332
>gi|336477091|ref|YP_004616232.1| transcription factor TFIIB cyclin [Methanosalsum zhilinae DSM 4017]
gi|335930472|gb|AEH61013.1| Transcription factor TFIIB cyclin-related protein [Methanosalsum
zhilinae DSM 4017]
Length = 337
Score = 170 bits (431), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 114/291 (39%), Positives = 169/291 (58%), Gaps = 15/291 (5%)
Query: 5 KVCCYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPE 64
+V C E L DY + +C++CGLVV +D G EWR F +++ + SRVG P
Sbjct: 38 EVMCPECGSRNLEHDYERAELVCADCGLVVDAEFVDEGPEWRAFDHDQR-MKRSRVGAPM 96
Query: 65 NPLLNGSDLSTMIGPGRGDASFDG---------FGMSKYQNR-RTMNSSDRALLNAIREI 114
++ LSTMI D+ + + K+Q R R N+++R L A+ E+
Sbjct: 97 TYTIHDKGLSTMIDWRNRDSYGKSISSKNRAQLYRLRKWQRRIRVSNATERNLAFALSEL 156
Query: 115 NSMADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEIC 174
+ MA + L +T+ + A ++++ D ++GRS + +A+A LY ACRQ VPRT EI
Sbjct: 157 DRMASALGLPRTVRETAAVVYRKAVDKNLIRGRSIEGVAAAALYAACRQCSVPRTLDEIG 216
Query: 175 AVSKISKKEIGRCFKLILKALETSVDLITTG--DFMSRFCSNLSLPNMVQKAATHIARKA 232
VS++S+KEIGR ++ I + L S+ L+ T D++ RFCS L L VQ + I R+A
Sbjct: 217 EVSRVSRKEIGRTYRFISREL--SLKLMPTSPIDYVPRFCSGLQLKGEVQSKSVEILRQA 274
Query: 233 VELDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
E ++ GR P VAAAAIY+AS D+R+Q+E+ D+AGV EVTIR YK
Sbjct: 275 SEKELTSGRGPTGVAAAAIYIASILCGDRRTQREVADVAGVTEVTIRNRYK 325
Score = 45.4 bits (106), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 55/96 (57%), Gaps = 1/96 (1%)
Query: 208 MSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEI 267
+ R S L LP V++ A + RKAV+ +++ GRS VAAAA+Y A + S R+ EI
Sbjct: 156 LDRMASALGLPRTVRETAAVVYRKAVDKNLIRGRSIEGVAAAALYAACRQCSVPRTLDEI 215
Query: 268 GDIAGVAEVTIRQSYKLMYPHAS-KLFPQDFVFHTP 302
G+++ V+ I ++Y+ + S KL P + + P
Sbjct: 216 GEVSRVSRKEIGRTYRFISRELSLKLMPTSPIDYVP 251
>gi|385805988|ref|YP_005842386.1| Transcription initiation factor IIB (TFIIB) [Fervidicoccus fontis
Kam940]
gi|383795851|gb|AFH42934.1| Transcription initiation factor IIB (TFIIB) [Fervidicoccus fontis
Kam940]
Length = 316
Score = 170 bits (431), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 94/295 (31%), Positives = 168/295 (56%), Gaps = 11/295 (3%)
Query: 12 PDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGS 71
P ++ D G+ IC+E G V+ ++++ G EWR F+ E+ SR+GGP +P ++
Sbjct: 22 PPNAIVFDPERGEYICTETGEVLEQKLVNQGPEWRAFTPEEKE-KRSRIGGPLSPTVHDR 80
Query: 72 DLSTMIGPGRGDAS---------FDGFGMSKYQNRRTMNSS-DRALLNAIREINSMADRI 121
L+T+I DAS + K+Q R + SS DR L A+ E++ +++++
Sbjct: 81 GLTTLIDWRDRDASGKKLEPKKRLEFLRYRKWQIRSRIQSSIDRNLAQAMNELDRLSNQL 140
Query: 122 NLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISK 181
+L + + + A ++++ + ++GRS +++ +A +Y+ACR + +PRT EI ++ ++
Sbjct: 141 HLNRAVREEAAVIYRKAVEKGLVRGRSIESVIAASVYVACRLKKLPRTLDEISLHTRANR 200
Query: 182 KEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGR 241
KEI RC++L++K L+ V + D++ R S L L A I + A + + G+
Sbjct: 201 KEIARCYRLLVKELQLKVPIADPIDYIPRMGSLLDLSGKAMNIAARIVKIAKQKALTAGK 260
Query: 242 SPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKLFPQD 296
P +AAAAIY+A+ ++KR+QKEI +IAGV EVT+R YK + P++
Sbjct: 261 DPAGLAAAAIYVATLLENEKRTQKEIANIAGVTEVTVRNRYKELVNELKLDIPEE 315
Score = 42.0 bits (97), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 55/117 (47%), Gaps = 6/117 (5%)
Query: 195 LETSVD--LITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIY 252
+++S+D L + + R + L L V++ A I RKAVE +V GRS SV AA++Y
Sbjct: 118 IQSSIDRNLAQAMNELDRLSNQLHLNRAVREEAAVIYRKAVEKGLVRGRSIESVIAASVY 177
Query: 253 MASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKLFPQDFVFHTPIHELPQL 309
+A + R+ EI I + Y+L+ P PI +P++
Sbjct: 178 VACRLKKLPRTLDEISLHTRANRKEIARCYRLLVKELQLKVP----IADPIDYIPRM 230
>gi|296242903|ref|YP_003650390.1| transcription initiation factor IIB [Thermosphaera aggregans DSM
11486]
gi|296095487|gb|ADG91438.1| Transcription initiation factor IIB (TFIIB) [Thermosphaera
aggregans DSM 11486]
Length = 306
Score = 170 bits (431), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 95/294 (32%), Positives = 159/294 (54%), Gaps = 14/294 (4%)
Query: 12 PDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGS 71
P L+ D G+ +C + G VV +++ID EWR F+ E+ G +R GGP ++
Sbjct: 14 PHDKLVYDSEHGEYVCLDTGEVVEEKIIDERPEWRAFTPEERG-RRARTGGPLTTTVHDM 72
Query: 72 DLSTMIGPGRGDASFDGF--------GMSKYQNR-RTMNSSDRALLNAIREINSMADRIN 122
+T I DA+ + K+Q R R + S DR L A+ E+ + D +N
Sbjct: 73 GFATAIDYSNKDAAGRKLMGKRQELVKLRKWQARTRILTSMDRNLAQAMNELERLGDLLN 132
Query: 123 LTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKK 182
L + + A ++++ + ++GRS +++ +A +Y+ACR+ VPR+ E+ ++I +K
Sbjct: 133 LPSHVKEEAARIYREAVEKGLVRGRSIESVIAAAVYVACRELKVPRSLDEVSRHTRIGRK 192
Query: 183 EIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRS 242
+I RC++L+L+ L+ V D++ R L LP V K A + A E + G+
Sbjct: 193 DIARCYRLLLRELDIKVGTTDPVDYVPRIVHALGLPGTVVKKAVELLNVAREHGVTGGKD 252
Query: 243 PISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKLFPQD 296
P +AAAA+Y+AS +KR+QKE+ +AGV EVT+R YK + +K+F D
Sbjct: 253 PAGLAAAAVYVASLELGEKRTQKEVAHVAGVTEVTVRNRYKEL----AKIFGLD 302
>gi|307595018|ref|YP_003901335.1| Zinc finger TFIIB-type domain-containing protein [Vulcanisaeta
distributa DSM 14429]
gi|307550219|gb|ADN50284.1| Zinc finger TFIIB-type domain protein [Vulcanisaeta distributa DSM
14429]
Length = 336
Score = 170 bits (431), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 100/290 (34%), Positives = 157/290 (54%), Gaps = 12/290 (4%)
Query: 4 NKVCCYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGP 63
K+ C I DY G IC++CG VV + VID+ EWR F+ E+ +R GGP
Sbjct: 36 EKLVCPYCGSTTFIFDYENGQVICAKCGSVVLEHVIDLRPEWRAFTAEEKEAR-ARAGGP 94
Query: 64 ENPLLNGSDLSTMIGPGRGDAS---------FDGFGMSKYQNR-RTMNSSDRALLNAIRE 113
N L + + L+T I DAS + K+Q R R S +R ++ A+ E
Sbjct: 95 LNRLTSEA-LTTTIDWATKDASGKELDIKRKLEILKYRKWQQRVRVQTSYERNIIQAMNE 153
Query: 114 INSMADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEI 173
++ ++ ++ + K VD A +++QV ++GRS +AI +ACL++ACR+ G+PR+ EI
Sbjct: 154 LSRISSQLGIPKACVDEAMGIYEQVLTKGLVRGRSVEAIVAACLHMACRKIGMPRSLDEI 213
Query: 174 CAVSKISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAV 233
++ S+KE+ RCF+LI + L + L ++ R L L + K A +I +A
Sbjct: 214 SQYTRASRKEVARCFRLIARELGVRLPLSDPKLYVPRIVEQLKLSGEILKEALNILEQAK 273
Query: 234 ELDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
+ G+ P +AAAA+Y+AS + R+QKE+ A V EVT+R YK
Sbjct: 274 RKGLTAGKDPAGLAAAAVYIASLLKGEVRTQKEVAMAAQVTEVTVRNRYK 323
>gi|337283805|ref|YP_004623279.1| transcription initiation factor IIB [Pyrococcus yayanosii CH1]
gi|334899739|gb|AEH24007.1| transcription initiation factor IIB [Pyrococcus yayanosii CH1]
Length = 300
Score = 170 bits (431), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 98/291 (33%), Positives = 163/291 (56%), Gaps = 12/291 (4%)
Query: 1 MNINKVC--CYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPS 58
MN +VC C I D G+ +C++CG VV + +ID+G EWR F + S
Sbjct: 1 MNKQRVCPVC---GWTEFIYDPERGEIVCAKCGYVVEENIIDMGPEWRAFDASQRE-RRS 56
Query: 59 RVGGPENPLLNGSDLSTMIGPGR---GDASFDGFGMSKYQNR-RTMNSSDRALLNAIREI 114
R G PE+ LL+ LST IG R G + + ++Q+R R ++++R L A+ E+
Sbjct: 57 RTGAPESILLHDKGLSTDIGIDRSLTGLMREKMYRLRRWQSRLRVSDAAERNLAFALSEL 116
Query: 115 NSMADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEIC 174
+ + ++ L K + + A L+++ ++GRS +++ +AC+Y ACR VPRT EI
Sbjct: 117 DRITAQLKLPKHVEEEAARLYREAVRRGLIRGRSIESVIAACVYAACRLLKVPRTLDEIS 176
Query: 175 AVSKISKKEIGRCFKLILKALETSVD--LITTGDFMSRFCSNLSLPNMVQKAATHIARKA 232
+S++ KKEIGR ++ I + L + + D++++F L L V++ A I +A
Sbjct: 177 DISRVDKKEIGRSYRFIARNLNLTPKKLFVKPTDYVNKFADELGLSEKVRRKAVEILEEA 236
Query: 233 VELDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
+ G+SP + AAA+Y+AS +KR+Q+E+ ++A V EVT+R YK
Sbjct: 237 YRKGLTSGKSPAGLVAAALYIASLLEGEKRTQREVAEVARVTEVTVRNRYK 287
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 52/97 (53%), Gaps = 6/97 (6%)
Query: 208 MSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEI 267
+ R + L LP V++ A + R+AV ++ GRS SV AA +Y A + R+ EI
Sbjct: 116 LDRITAQLKLPKHVEEEAARLYREAVRRGLIRGRSIESVIAACVYAACRLLKVPRTLDEI 175
Query: 268 GDIAGVAEVTIRQSYKLMYPHAS----KLF--PQDFV 298
DI+ V + I +SY+ + + + KLF P D+V
Sbjct: 176 SDISRVDKKEIGRSYRFIARNLNLTPKKLFVKPTDYV 212
Score = 40.8 bits (94), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 46/86 (53%)
Query: 114 INSMADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEI 173
+N AD + L++ + +A + ++ + G+S + +A LYIA EG RT +E+
Sbjct: 212 VNKFADELGLSEKVRRKAVEILEEAYRKGLTSGKSPAGLVAAALYIASLLEGEKRTQREV 271
Query: 174 CAVSKISKKEIGRCFKLILKALETSV 199
V+++++ + +K +++ L V
Sbjct: 272 AEVARVTEVTVRNRYKELVEKLGIKV 297
>gi|386875622|ref|ZP_10117781.1| putative transcription initiation factor IIB [Candidatus
Nitrosopumilus salaria BD31]
gi|386806378|gb|EIJ65838.1| putative transcription initiation factor IIB [Candidatus
Nitrosopumilus salaria BD31]
Length = 303
Score = 170 bits (430), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 92/282 (32%), Positives = 162/282 (57%), Gaps = 12/282 (4%)
Query: 8 CYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPL 67
C D ++ D G+ C +CGLVV D++ + G+EWR+FSN++S + +RVG +
Sbjct: 12 CPSCGDKKMVTDQTTGELFCGKCGLVVTDKIAETGAEWRSFSNDES--NRTRVGAGTSLT 69
Query: 68 LNGSDLSTMIGPGRGDASFDGFGMS--------KYQNRRTM--NSSDRALLNAIREINSM 117
++ LST+IG D++ S + + RT +S+DR L A+ E++ +
Sbjct: 70 MHDMGLSTIIGAANKDSTGKPLSASVRSSIERLRTWDSRTQAHSSADRNLRQALNEMDKL 129
Query: 118 ADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVS 177
D++ LT ++V++A ++++ + K ++GRS + +ACLY +CR PRT +I
Sbjct: 130 KDKLALTDSVVEKAAYIYRKAMEKKLVRGRSIQGLVAACLYASCRNTETPRTLDDIAKGI 189
Query: 178 KISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDI 237
I +K++ RC++LI + LE + ++ +SR S L ++ A I +A E+ +
Sbjct: 190 NIRRKDVARCYRLIFRELELKMPVVDPVKGVSRIASIAELSEKSKRKAIVILNQAKEIGM 249
Query: 238 VPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIR 279
V G+ P+ +AAAA+Y+A ++ + +SQK+I +GV EVTIR
Sbjct: 250 VAGKDPMGIAAAALYLACISTGETKSQKDISIASGVTEVTIR 291
Score = 37.4 bits (85), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 42/87 (48%)
Query: 208 MSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEI 267
M + L+L + V + A +I RKA+E +V GRS + AA +Y + + + R+ +I
Sbjct: 126 MDKLKDKLALTDSVVEKAAYIYRKAMEKKLVRGRSIQGLVAACLYASCRNTETPRTLDDI 185
Query: 268 GDIAGVAEVTIRQSYKLMYPHASKLFP 294
+ + + Y+L++ P
Sbjct: 186 AKGINIRRKDVARCYRLIFRELELKMP 212
>gi|240103255|ref|YP_002959564.1| transcription initiation factor IIB [Thermococcus gammatolerans
EJ3]
gi|239910809|gb|ACS33700.1| Transcription initiation factor TFIIB (tfb) [Thermococcus
gammatolerans EJ3]
Length = 300
Score = 170 bits (430), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 92/274 (33%), Positives = 155/274 (56%), Gaps = 7/274 (2%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLST 75
I D G+ +C CG V+ + V+D+G EWR F + +R G PE+ LL+ LST
Sbjct: 15 FIYDPSRGEVVCKVCGYVIEENVVDMGPEWRAFDASQRE-KRARAGAPESILLHDKGLST 73
Query: 76 MIGPGR---GDASFDGFGMSKYQNR-RTMNSSDRALLNAIREINSMADRINLTKTIVDRA 131
IG R G + + K+Q+R R ++++R L A+ E++ +A + L + + + A
Sbjct: 74 DIGIDRSLTGLMREKMYRLRKWQSRLRVSDAAERNLAFALSELDRLASNLRLPRHVEEEA 133
Query: 132 NNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGRCFKLI 191
L+++ ++GRS +++ +AC+Y ACR +PRT EI VS++ KKEIGR F+ I
Sbjct: 134 ARLYREAVRKGLIRGRSIESVIAACVYAACRLLKIPRTLDEIAEVSRVDKKEIGRSFRFI 193
Query: 192 LKALETSVD--LITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAA 249
+ L + + D++S+F L L V++ A + +A E + G+SP + AA
Sbjct: 194 ARHLNLTPKKLFVKPTDYVSKFADELGLSEKVRRRAIELLEEAYEKGLTSGKSPAGLVAA 253
Query: 250 AIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
A+Y+A ++R+Q+E+ ++A V EVT+R YK
Sbjct: 254 ALYIAGIMEGERRTQREVAEVARVTEVTVRNRYK 287
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 53/97 (54%), Gaps = 6/97 (6%)
Query: 208 MSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEI 267
+ R SNL LP V++ A + R+AV ++ GRS SV AA +Y A + R+ EI
Sbjct: 116 LDRLASNLRLPRHVEEEAARLYREAVRKGLIRGRSIESVIAACVYAACRLLKIPRTLDEI 175
Query: 268 GDIAGVAEVTIRQSYKLMYPHAS----KLF--PQDFV 298
+++ V + I +S++ + H + KLF P D+V
Sbjct: 176 AEVSRVDKKEIGRSFRFIARHLNLTPKKLFVKPTDYV 212
Score = 42.7 bits (99), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 47/86 (54%)
Query: 114 INSMADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEI 173
++ AD + L++ + RA L ++ ++ G+S + +A LYIA EG RT +E+
Sbjct: 212 VSKFADELGLSEKVRRRAIELLEEAYEKGLTSGKSPAGLVAAALYIAGIMEGERRTQREV 271
Query: 174 CAVSKISKKEIGRCFKLILKALETSV 199
V+++++ + +K +++ L V
Sbjct: 272 AEVARVTEVTVRNRYKELIEKLNLKV 297
>gi|330040447|ref|XP_003239917.1| TATA binding protein of transcription factor IID [Cryptomonas
paramecium]
gi|327206843|gb|AEA39019.1| TATA binding protein of transcription factor IID [Cryptomonas
paramecium]
Length = 341
Score = 170 bits (430), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 109/307 (35%), Positives = 164/307 (53%), Gaps = 40/307 (13%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLST 75
+IED + G+ IC +CGLV ID +EWRTFS+++ DPSR+G +PL+ +L+
Sbjct: 32 IIEDKKQGELICKDCGLVFASHTIDFNNEWRTFSSDQFKKDPSRIGSHSHPLI---ELNR 88
Query: 76 MIGPGRGDASFDGFGMSKYQNRRTMNSSDRA-------LLNAIREINSM-ADRINLTKTI 127
G +G F+ + N R + S +R LN I NS+ ++ L K I
Sbjct: 89 STGISKGLKGFN------FLNERLIKSHNRTNIEKVNYFLNKIFVKNSLIIEKAFLPKFI 142
Query: 128 VDRANNLFKQVHDGKN-----------LKGRSNDAIASACLYIACRQEGVPRTFKEICAV 176
+ LFK D LK + +I +A + I CR EG+PRTF+EI +
Sbjct: 143 KQKVEELFKLYFDHLTMRSDGSRTRNFLKKKETTSILAALILICCRNEGIPRTFREISEI 202
Query: 177 SKISKKEIGRCFKLILKALETSVDLI------TTGDFMSRFCSNLSLPNMVQKAATHIAR 230
+KISKKEIG L ++A++ S+ I + +F+SRFCS L LP A +AR
Sbjct: 203 TKISKKEIG----LKVRAIQRSLRGIHFTKTKNSENFVSRFCSKLGLPYFAGDLAEKLAR 258
Query: 231 KAVELDIVPGRSPISVAAAAIYMASQA--SSDKRSQKEIGDIAGVAEVTIRQSYKLMYPH 288
E + + G++ ISVA AAIY+ +Q + K + KEI IAG+ E T+R +YK +YP+
Sbjct: 259 LVKEKEGLYGKTLISVATAAIYIITQMPFCNVKYTSKEISRIAGINENTLRITYKAVYPY 318
Query: 289 ASKLFPQ 295
+++
Sbjct: 319 KNEILKH 325
>gi|298674300|ref|YP_003726050.1| transcription factor tFIIB cyclin-like protein [Methanohalobium
evestigatum Z-7303]
gi|298287288|gb|ADI73254.1| Transcription factor TFIIB cyclin-related protein [Methanohalobium
evestigatum Z-7303]
Length = 341
Score = 170 bits (430), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 113/288 (39%), Positives = 168/288 (58%), Gaps = 15/288 (5%)
Query: 8 CYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPL 67
C E L +DY + +CS+CGLVV ++D G EWR F +++ + SRVG P
Sbjct: 45 CPECGSINLEQDYERAELVCSDCGLVVDAELVDEGPEWRAFDHDQR-MKRSRVGAPMTYT 103
Query: 68 LNGSDLSTMIGPGRGDASFDG---------FGMSKYQNR-RTMNSSDRALLNAIREINSM 117
++ LSTMI D+ + + K+Q R R N+++R L A+ E++ M
Sbjct: 104 IHDKGLSTMIDWRNRDSYGKSISSKNRAQLYRLRKWQRRIRVSNATERNLAFALSELDRM 163
Query: 118 ADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVS 177
A + L +T+ + A ++++ D ++GRS + +A+A LY ACRQ VPRT EI VS
Sbjct: 164 ASALGLPRTVRETAAVVYRKAVDKNLIRGRSIEGVAAAALYAACRQCSVPRTLDEIGEVS 223
Query: 178 KISKKEIGRCFKLILKALETSVDLITTG--DFMSRFCSNLSLPNMVQKAATHIARKAVEL 235
++S+KEIGR ++ I + L S+ L+ T D++ RFCS L L VQ I R+A E
Sbjct: 224 RVSRKEIGRTYRFISREL--SLKLMPTSPIDYVPRFCSGLKLKGEVQSKGVEILRQASEK 281
Query: 236 DIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
++ GR P VAAAAIY+AS ++R+Q+E+ D+AGV EVTIR YK
Sbjct: 282 ELTSGRGPTGVAAAAIYIASILCGERRTQREVADVAGVTEVTIRNRYK 329
Score = 45.8 bits (107), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 55/96 (57%), Gaps = 1/96 (1%)
Query: 208 MSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEI 267
+ R S L LP V++ A + RKAV+ +++ GRS VAAAA+Y A + S R+ EI
Sbjct: 160 LDRMASALGLPRTVRETAAVVYRKAVDKNLIRGRSIEGVAAAALYAACRQCSVPRTLDEI 219
Query: 268 GDIAGVAEVTIRQSYKLMYPHAS-KLFPQDFVFHTP 302
G+++ V+ I ++Y+ + S KL P + + P
Sbjct: 220 GEVSRVSRKEIGRTYRFISRELSLKLMPTSPIDYVP 255
>gi|257052295|ref|YP_003130128.1| Transcription factor TFIIB cyclin-related [Halorhabdus utahensis
DSM 12940]
gi|335441176|ref|ZP_08561897.1| Transcription factor TFIIB cyclin-related protein [Halorhabdus
tiamatea SARL4B]
gi|256691058|gb|ACV11395.1| Transcription factor TFIIB cyclin-related [Halorhabdus utahensis
DSM 12940]
gi|334888347|gb|EGM26646.1| Transcription factor TFIIB cyclin-related protein [Halorhabdus
tiamatea SARL4B]
Length = 321
Score = 170 bits (430), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 102/286 (35%), Positives = 162/286 (56%), Gaps = 11/286 (3%)
Query: 8 CYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPL 67
C E L++D G+ IC +CGLVV + ID G EWR F N + + SRVG P
Sbjct: 27 CPECGSDSLVKDADRGELICEDCGLVVEEGNIDPGPEWRAF-NHQERQEKSRVGAPTTQT 85
Query: 68 LNGSDLSTMIGPGRGDASFDGFG---------MSKYQNR-RTMNSSDRALLNAIREINSM 117
++ L+T I DA + K+Q R RT ++ +R L A+ EI+ M
Sbjct: 86 MHDKGLTTTIDWKDKDAYGRSISSKKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDRM 145
Query: 118 ADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVS 177
A + + +++ + A+ ++++ D ++GRS + +A++ LY ACR+EG+PR+ +EI VS
Sbjct: 146 ASALGVPRSVREVASVIYRRALDDDLIRGRSIEGVATSALYAACRKEGIPRSLEEISEVS 205
Query: 178 KISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDI 237
++ +KEIGR ++ I + L ++ + ++ RFCS L L VQ A I E +
Sbjct: 206 RVERKEIGRTYRYISQELGLEMEPVDPKKYVPRFCSELELSEEVQSKANEIIETTAEKGL 265
Query: 238 VPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
+ G+SP AAAAIY AS ++K++Q+E+ D+A V EVTIR Y+
Sbjct: 266 LSGKSPTGYAAAAIYAASLLCNEKKTQREVADVAQVTEVTIRNRYQ 311
>gi|350525782|ref|YP_004885404.1| transcription initiation factor B [Thermococcus sp. AM4]
gi|345650601|gb|AEO13966.1| Transcription initiation factor B [Thermococcus sp. AM4]
Length = 300
Score = 169 bits (429), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 92/274 (33%), Positives = 155/274 (56%), Gaps = 7/274 (2%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLST 75
I D G+ +C CG V+ + V+D+G EWR F + +R G PE+ LL+ LST
Sbjct: 15 FIYDPSRGEVVCKVCGYVIEENVVDMGPEWRAFDASQRE-KRARAGAPESILLHDKGLST 73
Query: 76 MIGPGR---GDASFDGFGMSKYQNR-RTMNSSDRALLNAIREINSMADRINLTKTIVDRA 131
IG R G + + K+Q+R R ++++R L A+ E++ +A + L + + + A
Sbjct: 74 DIGIDRSLTGLMREKMYRLRKWQSRLRVSDAAERNLAFALSELDRLASNLRLPRHVEEEA 133
Query: 132 NNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGRCFKLI 191
L+++ ++GRS +++ +AC+Y ACR +PRT EI VS++ KKEIGR F+ I
Sbjct: 134 ARLYREAVRKGLIRGRSIESVIAACVYAACRLLKIPRTLDEIAEVSRVDKKEIGRSFRFI 193
Query: 192 LKALETSVD--LITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAA 249
+ L + + D++S+F L L V++ A + +A E + G+SP + AA
Sbjct: 194 ARHLNLTPKKLFVKPTDYVSKFADELGLSEKVRRRAIELLEEAYEKGLTSGKSPAGLVAA 253
Query: 250 AIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
A+Y+A ++R+Q+E+ ++A V EVT+R YK
Sbjct: 254 ALYIAGIMEGERRTQREVAEVARVTEVTVRNRYK 287
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 53/97 (54%), Gaps = 6/97 (6%)
Query: 208 MSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEI 267
+ R SNL LP V++ A + R+AV ++ GRS SV AA +Y A + R+ EI
Sbjct: 116 LDRLASNLRLPRHVEEEAARLYREAVRKGLIRGRSIESVIAACVYAACRLLKIPRTLDEI 175
Query: 268 GDIAGVAEVTIRQSYKLMYPHAS----KLF--PQDFV 298
+++ V + I +S++ + H + KLF P D+V
Sbjct: 176 AEVSRVDKKEIGRSFRFIARHLNLTPKKLFVKPTDYV 212
Score = 42.7 bits (99), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 47/86 (54%)
Query: 114 INSMADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEI 173
++ AD + L++ + RA L ++ ++ G+S + +A LYIA EG RT +E+
Sbjct: 212 VSKFADELGLSEKVRRRAIELLEEAYEKGLTSGKSPAGLVAAALYIAGIMEGERRTQREV 271
Query: 174 CAVSKISKKEIGRCFKLILKALETSV 199
V+++++ + +K +++ L V
Sbjct: 272 AEVARVTEVTVRNRYKELIEKLNLKV 297
>gi|325969253|ref|YP_004245445.1| transcription factor TFIIB cyclin-related protein [Vulcanisaeta
moutnovskia 768-28]
gi|323708456|gb|ADY01943.1| Transcription factor TFIIB cyclin-related protein [Vulcanisaeta
moutnovskia 768-28]
Length = 336
Score = 169 bits (429), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 100/290 (34%), Positives = 157/290 (54%), Gaps = 12/290 (4%)
Query: 4 NKVCCYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGP 63
K+ C I DY G IC++CG VV + VID+ EWR F+ E+ +R GGP
Sbjct: 36 EKLVCPYCGSTTFIFDYENGQVICAKCGSVVLEHVIDLRPEWRAFTAEEKETR-ARAGGP 94
Query: 64 ENPLLNGSDLSTMIGPGRGDAS---------FDGFGMSKYQNR-RTMNSSDRALLNAIRE 113
N L + + L+T I DAS + K+Q R R S +R ++ A+ E
Sbjct: 95 LNRLTSEA-LTTTIDWATKDASGKELDIKRKLEILKYRKWQQRVRVQTSYERNIIQAMNE 153
Query: 114 INSMADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEI 173
++ ++ ++ + K VD A +++QV ++GRS +AI +ACL++ACR+ G+PR+ EI
Sbjct: 154 LSRISSQLGIPKACVDEAMGVYEQVLTKGLVRGRSVEAIVAACLHMACRKIGMPRSLDEI 213
Query: 174 CAVSKISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAV 233
++ S+KE+ RCF+LI + L + L ++ R L L + K A +I +A
Sbjct: 214 SQYTRASRKEVARCFRLIARELGVRLPLSDPKLYVPRIVEQLKLSGEILKEALNILEQAK 273
Query: 234 ELDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
+ G+ P +AAAA+Y+AS + R+QKE+ A V EVT+R YK
Sbjct: 274 RKGLTAGKDPAGLAAAAVYIASLLRGEVRTQKEVAMAAQVTEVTVRNRYK 323
>gi|14591268|ref|NP_143345.1| transcription initiation factor IIB [Pyrococcus horikoshii OT3]
gi|6647871|sp|O59151.1|TF2B_PYRHO RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|3257906|dbj|BAA30589.1| 300aa long hypothetical transcription initiation factor IIB
[Pyrococcus horikoshii OT3]
Length = 300
Score = 169 bits (429), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 97/291 (33%), Positives = 161/291 (55%), Gaps = 12/291 (4%)
Query: 1 MNINKVC--CYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPS 58
M KVC C I D G+ +C+ CG V+ + +ID+G EWR F + S
Sbjct: 1 MTKQKVCPVC---GSTEFIYDPERGEIVCARCGYVIEENIIDMGPEWRAFDASQRE-KRS 56
Query: 59 RVGGPENPLLNGSDLSTMIGPGR---GDASFDGFGMSKYQNR-RTMNSSDRALLNAIREI 114
R G PE+ LL+ LST IG R G + + K+Q+R R ++++R L A+ E+
Sbjct: 57 RTGAPESILLHDKGLSTDIGIDRSLTGLMREKMYRLRKWQSRLRVSDAAERNLAFALSEL 116
Query: 115 NSMADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEIC 174
+ + ++ L K + + A L+++ ++GRS +++ +AC+Y ACR VPRT EI
Sbjct: 117 DRITAQLKLPKHVEEEAARLYREAVRKGLIRGRSIESVIAACVYAACRLLKVPRTLDEIS 176
Query: 175 AVSKISKKEIGRCFKLILKALETSVD--LITTGDFMSRFCSNLSLPNMVQKAATHIARKA 232
++++ KKEIGR ++ I + L + + D++++F L L V++ A I +A
Sbjct: 177 DIARVEKKEIGRSYRFIARNLNLTPKKLFVKPTDYVNKFADELGLSEKVRRRAIEILEEA 236
Query: 233 VELDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
+ G+SP + AAA+Y+AS +KR+Q+E+ ++A V EVT+R YK
Sbjct: 237 YRRGLTSGKSPAGLVAAALYIASLLEGEKRTQREVAEVARVTEVTVRNRYK 287
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 52/97 (53%), Gaps = 6/97 (6%)
Query: 208 MSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEI 267
+ R + L LP V++ A + R+AV ++ GRS SV AA +Y A + R+ EI
Sbjct: 116 LDRITAQLKLPKHVEEEAARLYREAVRKGLIRGRSIESVIAACVYAACRLLKVPRTLDEI 175
Query: 268 GDIAGVAEVTIRQSYKLMYPHAS----KLF--PQDFV 298
DIA V + I +SY+ + + + KLF P D+V
Sbjct: 176 SDIARVEKKEIGRSYRFIARNLNLTPKKLFVKPTDYV 212
Score = 42.0 bits (97), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 46/86 (53%)
Query: 114 INSMADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEI 173
+N AD + L++ + RA + ++ + G+S + +A LYIA EG RT +E+
Sbjct: 212 VNKFADELGLSEKVRRRAIEILEEAYRRGLTSGKSPAGLVAAALYIASLLEGEKRTQREV 271
Query: 174 CAVSKISKKEIGRCFKLILKALETSV 199
V+++++ + +K +++ L V
Sbjct: 272 AEVARVTEVTVRNRYKELVEKLGIKV 297
>gi|212224386|ref|YP_002307622.1| transcription initiation factor IIB [Thermococcus onnurineus NA1]
gi|212009343|gb|ACJ16725.1| transcription initiation factor IIB [Thermococcus onnurineus NA1]
Length = 303
Score = 169 bits (429), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 101/292 (34%), Positives = 165/292 (56%), Gaps = 15/292 (5%)
Query: 2 NINKVCCYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVG 61
NI VC + L D R G+ +CS CG VV VID G EWR F ++ +R G
Sbjct: 5 NICPVCGSDK----LFYDPRRGEIVCSVCGYVVQQNVIDEGPEWRAFDPDQR-TKRARTG 59
Query: 62 GPENPLLNGSDLSTMIGPGRGDASFDGF-GMSK--------YQNRRTMN-SSDRALLNAI 111
P +++ LST I D + GM + +Q R +N +++R L A+
Sbjct: 60 APMTLMIHDKGLSTDIDWRDRDIHGNQITGMYRTKMRRLRMWQRRMRINDAAERNLAFAL 119
Query: 112 REINSMADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFK 171
E++ MA ++ L + + + A +L+++ K ++GRS + + SA LY ACR EG+PRT
Sbjct: 120 SELDRMAAQMMLPRRVKEVAASLYRKAVMKKLIRGRSIEGMVSAALYAACRMEGIPRTLD 179
Query: 172 EICAVSKISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARK 231
EI AVSK++KKEIGR ++ + + L ++ + +++ RF +L + +K A I ++
Sbjct: 180 EIAAVSKVTKKEIGRSYRFLARGLGLNLRPTSPIEYIDRFGDSLDVSQRTKKRAKEILQE 239
Query: 232 AVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
A++ I G+ P +AAAA+Y+AS +K++Q+E+ ++A V EVT+R YK
Sbjct: 240 AIKRGITSGKGPTGLAAAALYVASLLEGEKKTQREVAEVAHVTEVTVRNRYK 291
Score = 43.5 bits (101), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 42/78 (53%)
Query: 208 MSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEI 267
+ R + + LP V++ A + RKAV ++ GRS + +AA+Y A + R+ EI
Sbjct: 122 LDRMAAQMMLPRRVKEVAASLYRKAVMKKLIRGRSIEGMVSAALYAACRMEGIPRTLDEI 181
Query: 268 GDIAGVAEVTIRQSYKLM 285
++ V + I +SY+ +
Sbjct: 182 AAVSKVTKKEIGRSYRFL 199
>gi|433590946|ref|YP_007280442.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natrinema pellirubrum DSM
15624]
gi|448334479|ref|ZP_21523654.1| transcription factor TFIIB cyclin-related protein [Natrinema
pellirubrum DSM 15624]
gi|448385421|ref|ZP_21563927.1| transcription factor TFIIB cyclin-related protein [Haloterrigena
thermotolerans DSM 11522]
gi|433305726|gb|AGB31538.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natrinema pellirubrum DSM
15624]
gi|445619811|gb|ELY73328.1| transcription factor TFIIB cyclin-related protein [Natrinema
pellirubrum DSM 15624]
gi|445656916|gb|ELZ09748.1| transcription factor TFIIB cyclin-related protein [Haloterrigena
thermotolerans DSM 11522]
Length = 320
Score = 169 bits (429), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 102/286 (35%), Positives = 161/286 (56%), Gaps = 11/286 (3%)
Query: 8 CYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPL 67
C E L++D G+ IC +CGLVV + ID G EWR F N + + SRVG P
Sbjct: 26 CPECESDNLVKDSDRGELICEDCGLVVEEEQIDPGPEWRAF-NHQERQEKSRVGAPTTQT 84
Query: 68 LNGSDLSTMIGPGRGDASFDGFG---------MSKYQNR-RTMNSSDRALLNAIREINSM 117
++ L+T I DA + K+Q R RT ++ +R L A+ EI+ M
Sbjct: 85 MHDKGLTTTIDWKDKDAYGRSISSKKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDRM 144
Query: 118 ADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVS 177
A + + +++ + A+ ++++ ++GRS + +A++ LY ACR+EG+PR+ +EI VS
Sbjct: 145 ASALGVPRSVREVASVIYRRALKEDLIRGRSIEGVATSALYAACRKEGIPRSLEEISEVS 204
Query: 178 KISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDI 237
++ +KEIGR ++ I + L + + ++ RFCS L L VQ A I K E +
Sbjct: 205 RVERKEIGRTYRYISQELGLEMRPVDPKKYVPRFCSELELSEEVQTKANEIIEKTAEEGL 264
Query: 238 VPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
+ G+SP AAAAIY AS ++K++Q+E+ D+A V EVTIR Y+
Sbjct: 265 LSGKSPTGYAAAAIYAASLLCNEKKTQREVADVAQVTEVTIRNRYQ 310
>gi|91772962|ref|YP_565654.1| transcription initiation factor IIB [Methanococcoides burtonii DSM
6242]
gi|91711977|gb|ABE51904.1| Transcription initiation factor IIB [Methanococcoides burtonii DSM
6242]
Length = 337
Score = 169 bits (429), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 115/293 (39%), Positives = 171/293 (58%), Gaps = 16/293 (5%)
Query: 4 NKVC-CYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGG 62
NKV C E L +DY + +C++CGLVV +D G EWR F +++ + SRVG
Sbjct: 36 NKVVECPECGSRSLEQDYERAELVCADCGLVVDAEFVDEGPEWRAFDHDQR-MKRSRVGA 94
Query: 63 PENPLLNGSDLSTMIGPGRGDASFDG---------FGMSKYQNR-RTMNSSDRALLNAIR 112
P ++ LSTMI D+ + + K+Q R R N+++R L A+
Sbjct: 95 PMTYTIHDKGLSTMIDWRNRDSYGKSISSKNRAQLYRLRKWQRRIRVSNATERNLAFALS 154
Query: 113 EINSMADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKE 172
E++ MA + L +T+ + A ++++ D ++GRS + +A+A LY ACRQ VPRT E
Sbjct: 155 ELDRMASALGLPRTVRETAAVVYRKAVDKNLIRGRSIEGVAAAALYAACRQCSVPRTLDE 214
Query: 173 ICAVSKISKKEIGRCFKLILKALETSVDLITTG--DFMSRFCSNLSLPNMVQKAATHIAR 230
I VS++S+KEIGR ++ I + L S+ L+ T D++ RFCS L+L VQ I R
Sbjct: 215 IGEVSRVSRKEIGRTYRFISREL--SLKLMPTSPIDYVPRFCSGLNLKGEVQSRGVEILR 272
Query: 231 KAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
+A E ++ GR P VAAAAIY+AS ++R+Q+E+ D+AGV EVTIR YK
Sbjct: 273 QASEKELTSGRGPTGVAAAAIYIASILCGERRTQREVADVAGVTEVTIRNRYK 325
Score = 45.8 bits (107), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 55/96 (57%), Gaps = 1/96 (1%)
Query: 208 MSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEI 267
+ R S L LP V++ A + RKAV+ +++ GRS VAAAA+Y A + S R+ EI
Sbjct: 156 LDRMASALGLPRTVRETAAVVYRKAVDKNLIRGRSIEGVAAAALYAACRQCSVPRTLDEI 215
Query: 268 GDIAGVAEVTIRQSYKLMYPHAS-KLFPQDFVFHTP 302
G+++ V+ I ++Y+ + S KL P + + P
Sbjct: 216 GEVSRVSRKEIGRTYRFISRELSLKLMPTSPIDYVP 251
>gi|448322503|ref|ZP_21511973.1| transcription initiation factor IIB [Natronococcus amylolyticus DSM
10524]
gi|445601261|gb|ELY55250.1| transcription initiation factor IIB [Natronococcus amylolyticus DSM
10524]
Length = 310
Score = 169 bits (429), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 102/286 (35%), Positives = 161/286 (56%), Gaps = 11/286 (3%)
Query: 8 CYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPL 67
C E L++D G+ IC +CGLVV + ID G EWR F N + + SRVG P
Sbjct: 16 CPECESDNLVKDSDRGELICEDCGLVVEEEKIDPGPEWRAF-NHQERQEKSRVGAPTTQT 74
Query: 68 LNGSDLSTMIGPGRGDASFDGFG---------MSKYQNR-RTMNSSDRALLNAIREINSM 117
++ L+T I DA + K+Q R RT ++ +R L A+ EI+ M
Sbjct: 75 MHDKGLTTTIDWKDKDAYGRSISSKKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDRM 134
Query: 118 ADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVS 177
A + + +++ + A+ ++++ ++GRS + +A++ LY ACR+EG+PR+ +EI VS
Sbjct: 135 ASALGVPRSVREVASVIYRRALKEDLIRGRSIEGVATSALYAACRKEGIPRSLEEISEVS 194
Query: 178 KISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDI 237
++ +KEIGR ++ I + L + + ++ RFCS L L VQ A I K E +
Sbjct: 195 RVERKEIGRTYRYISQELGLEMRPVDPKKYVPRFCSELELSEEVQTKANEIIEKTAEEGL 254
Query: 238 VPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
+ G+SP AAAAIY AS ++K++Q+E+ D+A V EVTIR Y+
Sbjct: 255 LSGKSPTGYAAAAIYAASLLCNEKKTQREVADVAQVTEVTIRNRYQ 300
>gi|448317588|ref|ZP_21507138.1| transcription initiation factor IIB [Natronococcus jeotgali DSM
18795]
gi|445602979|gb|ELY56949.1| transcription initiation factor IIB [Natronococcus jeotgali DSM
18795]
Length = 310
Score = 169 bits (429), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 102/286 (35%), Positives = 161/286 (56%), Gaps = 11/286 (3%)
Query: 8 CYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPL 67
C E L++D G+ IC +CGLVV + ID G EWR F N + + SRVG P
Sbjct: 16 CPECESDNLVKDSDRGELICEDCGLVVEEEKIDPGPEWRAF-NHQERQEKSRVGAPTTQT 74
Query: 68 LNGSDLSTMIGPGRGDASFDGFG---------MSKYQNR-RTMNSSDRALLNAIREINSM 117
++ L+T I DA + K+Q R RT ++ +R L A+ EI+ M
Sbjct: 75 MHDKGLTTTIDWKDKDAYGRSISSKKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDRM 134
Query: 118 ADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVS 177
A + + +++ + A+ ++++ ++GRS + +A++ LY ACR+EG+PR+ +EI VS
Sbjct: 135 ASALGVPRSVREVASVIYRRALKEDLIRGRSIEGVATSALYAACRKEGIPRSLEEISEVS 194
Query: 178 KISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDI 237
++ +KEIGR ++ I + L + + ++ RFCS L L VQ A I K E +
Sbjct: 195 RVERKEIGRTYRYISQELGLEMRPVDPKKYVPRFCSELELSEEVQTKANEIIEKTAEEGL 254
Query: 238 VPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
+ G+SP AAAAIY AS ++K++Q+E+ D+A V EVTIR Y+
Sbjct: 255 LSGKSPTGYAAAAIYAASLLCNEKKTQREVADVAQVTEVTIRNRYQ 300
>gi|390961741|ref|YP_006425575.1| transcription initiation factor IIB [Thermococcus sp. CL1]
gi|390520049|gb|AFL95781.1| transcription initiation factor IIB [Thermococcus sp. CL1]
Length = 299
Score = 169 bits (429), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 96/286 (33%), Positives = 160/286 (55%), Gaps = 7/286 (2%)
Query: 4 NKVCCYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGP 63
N+ C I D G+ IC CG V+ + V+D+G EWR F + +RVG P
Sbjct: 3 NRRVCPVCGSTEFIYDPGRGEIICKVCGYVIEENVVDMGPEWRAFDASQRE-KRARVGAP 61
Query: 64 ENPLLNGSDLSTMIGPGR---GDASFDGFGMSKYQNR-RTMNSSDRALLNAIREINSMAD 119
E+ LL+ LST IG R G + + K+Q+R R ++++R L A+ E++ +A
Sbjct: 62 ESILLHDKGLSTDIGIDRNLSGLMREKMYRLRKWQSRLRVSDAAERNLAFALSELDRIAS 121
Query: 120 RINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKI 179
++ L + + + A L+++ ++GRS +++ +AC+Y +CR VPRT EI +S++
Sbjct: 122 QLKLPRHVEEEAARLYREAVRKGLIRGRSIESVIAACVYASCRLLKVPRTLDEIADISRV 181
Query: 180 SKKEIGRCFKLILKALETSVD--LITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDI 237
KKEIGR F+ I + L + + D++++F L L V++ A I +A E +
Sbjct: 182 DKKEIGRSFRFIARNLNLTPKKLFVKPTDYVNKFADELGLSERVRRRAIAILEEAYEKGL 241
Query: 238 VPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
G+SP + AAA+Y+A +KR+Q+E+ ++A V EVT+R YK
Sbjct: 242 TSGKSPAGLVAAALYIAGLLEDEKRTQREVAEVARVTEVTVRNRYK 287
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 52/97 (53%), Gaps = 6/97 (6%)
Query: 208 MSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEI 267
+ R S L LP V++ A + R+AV ++ GRS SV AA +Y + + R+ EI
Sbjct: 116 LDRIASQLKLPRHVEEEAARLYREAVRKGLIRGRSIESVIAACVYASCRLLKVPRTLDEI 175
Query: 268 GDIAGVAEVTIRQSYKLMYPHAS----KLF--PQDFV 298
DI+ V + I +S++ + + + KLF P D+V
Sbjct: 176 ADISRVDKKEIGRSFRFIARNLNLTPKKLFVKPTDYV 212
Score = 38.5 bits (88), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 20/86 (23%), Positives = 45/86 (52%)
Query: 114 INSMADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEI 173
+N AD + L++ + RA + ++ ++ G+S + +A LYIA E RT +E+
Sbjct: 212 VNKFADELGLSERVRRRAIAILEEAYEKGLTSGKSPAGLVAAALYIAGLLEDEKRTQREV 271
Query: 174 CAVSKISKKEIGRCFKLILKALETSV 199
V+++++ + +K ++ L +
Sbjct: 272 AEVARVTEVTVRNRYKELVDKLNLKI 297
>gi|433593418|ref|YP_007296159.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natrinema pellirubrum DSM
15624]
gi|448333396|ref|ZP_21522596.1| transcription factor TFIIB cyclin-related protein [Natrinema
pellirubrum DSM 15624]
gi|433307928|gb|AGB33739.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natrinema pellirubrum DSM
15624]
gi|445622834|gb|ELY76276.1| transcription factor TFIIB cyclin-related protein [Natrinema
pellirubrum DSM 15624]
Length = 320
Score = 169 bits (429), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 100/292 (34%), Positives = 163/292 (55%), Gaps = 11/292 (3%)
Query: 2 NINKVCCYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVG 61
++++ C E + L+ G+ +C +CGL++ ID G EWR F N SRVG
Sbjct: 21 SVSEQTCDECGSSSLVTSEDQGELVCEDCGLIIETTNIDRGPEWRAF-NHAERKSKSRVG 79
Query: 62 GPENPLLNGSDLSTMIGPGRGDASFDGFG---------MSKYQNR-RTMNSSDRALLNAI 111
P ++ L+T I DA + K+Q R R ++ +R L A+
Sbjct: 80 APTTQTMHDKGLTTQIDWKDQDAHGRSLSADKRSRMNRLRKWQERIRAKDAGERNLQFAL 139
Query: 112 REINSMADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFK 171
EI+ MA + + +++ + A+ ++++ D ++GRS + +A+ACLY ACR+EG+PR+ +
Sbjct: 140 SEIDRMASALGIPRSVREVASVIYRRALDEDLIRGRSIEGVATACLYAACRREGIPRSLE 199
Query: 172 EICAVSKISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARK 231
EI VS++ +KEIGR ++ I + L +++ + +++ RFCS L VQ AT I
Sbjct: 200 EIADVSRVERKEIGRTYRYIAQELSLAMEPVDPKEYVPRFCSELDSSETVQAKATEIIDT 259
Query: 232 AVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
E ++ G+SP AAAAIY AS ++KR+QKE+ +A V EVTIR Y+
Sbjct: 260 TAEQGLLSGKSPTGFAAAAIYAASLLCNEKRTQKEVAAVAQVTEVTIRNRYQ 311
>gi|257388038|ref|YP_003177811.1| transcription factor TFIIB cyclin-related protein [Halomicrobium
mukohataei DSM 12286]
gi|257170345|gb|ACV48104.1| Transcription factor TFIIB cyclin-related [Halomicrobium mukohataei
DSM 12286]
Length = 322
Score = 169 bits (429), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 97/278 (34%), Positives = 156/278 (56%), Gaps = 13/278 (4%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTF-SNEKSGVDPSRVGGPENPLLNGSDLS 74
L+ D G+ +C +CGLVV + ID G EWR F ++EK + SRVG P +++ LS
Sbjct: 34 LVADSERGETVCEDCGLVVEEDEIDPGPEWRAFDASEKD--EKSRVGAPTTNMMHDKGLS 91
Query: 75 TMIGPGRGDA---SFDGFGMSKYQNRRTMN-------SSDRALLNAIREINSMADRINLT 124
T IG DA S K Q RT N S +R L A+ EI+ MA + L
Sbjct: 92 TNIGWQDKDAYGNSLSSRQREKMQRLRTWNERFRTRDSKERNLKQALGEIDRMASALGLP 151
Query: 125 KTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEI 184
+ + + A+ ++++ D L GRS + +A++ LY A RQ G PR+ EI AVS++ K EI
Sbjct: 152 ENVRETASVIYRRALDEDLLPGRSIEGVATSSLYAAARQAGTPRSLDEISAVSRVEKDEI 211
Query: 185 GRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPI 244
R ++ +++ L + ++ RF S+L L + V++ A + + A + + G+SP+
Sbjct: 212 ARTYRYVVRELGLEIQPADPESYVPRFASDLDLSDEVERRARQLLQNAKQQGVHSGKSPV 271
Query: 245 SVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSY 282
+AAA +Y AS +++K +Q E+ ++A ++EVTIR Y
Sbjct: 272 GLAAAGVYAASLLTNEKVTQSEVSEVANISEVTIRNRY 309
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 48/78 (61%)
Query: 208 MSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEI 267
+ R S L LP V++ A+ I R+A++ D++PGRS VA +++Y A++ + RS EI
Sbjct: 141 IDRMASALGLPENVRETASVIYRRALDEDLLPGRSIEGVATSSLYAAARQAGTPRSLDEI 200
Query: 268 GDIAGVAEVTIRQSYKLM 285
++ V + I ++Y+ +
Sbjct: 201 SAVSRVEKDEIARTYRYV 218
>gi|448298665|ref|ZP_21488693.1| transcription initiation factor IIB [Natronorubrum tibetense GA33]
gi|445591335|gb|ELY45541.1| transcription initiation factor IIB [Natronorubrum tibetense GA33]
Length = 320
Score = 169 bits (428), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 102/286 (35%), Positives = 161/286 (56%), Gaps = 11/286 (3%)
Query: 8 CYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPL 67
C E L++D G+ IC +CGLVV + ID G EWR F N + + SRVG P
Sbjct: 26 CPECESDNLVKDSDRGELICEDCGLVVEEEKIDPGPEWRAF-NHQERQEKSRVGAPTTQT 84
Query: 68 LNGSDLSTMIGPGRGDASFDGFG---------MSKYQNR-RTMNSSDRALLNAIREINSM 117
++ L+T I DA + K+Q R RT ++ +R L A+ EI+ M
Sbjct: 85 MHDKGLTTTIDWKDKDAYGRSISSKKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDRM 144
Query: 118 ADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVS 177
A + + +++ + A+ ++++ ++GRS + +A++ LY ACR+EG+PR+ +EI VS
Sbjct: 145 ASALGVPRSVREVASVIYRRALKEDLIRGRSIEGVATSALYAACRKEGIPRSLEEISEVS 204
Query: 178 KISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDI 237
++ +KEIGR ++ I + L + + ++ RFCS L L VQ A I K E +
Sbjct: 205 RVERKEIGRTYRYISQELGLEMRPVDPKKYVPRFCSELELSEEVQTKANEIIEKTAEKGL 264
Query: 238 VPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
+ G+SP AAAAIY AS ++K++Q+E+ D+A V EVTIR Y+
Sbjct: 265 LSGKSPTGYAAAAIYAASLLCNEKKTQREVADVAQVTEVTIRNRYQ 310
>gi|435848097|ref|YP_007310347.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natronococcus occultus SP4]
gi|433674365|gb|AGB38557.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natronococcus occultus SP4]
Length = 320
Score = 169 bits (428), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 102/286 (35%), Positives = 161/286 (56%), Gaps = 11/286 (3%)
Query: 8 CYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPL 67
C E L++D G+ IC +CGLVV + ID G EWR F N + + SRVG P
Sbjct: 26 CPECESDNLVKDSDRGELICEDCGLVVEEEKIDPGPEWRAF-NHQERQEKSRVGAPTTQT 84
Query: 68 LNGSDLSTMIGPGRGDASFDGFG---------MSKYQNR-RTMNSSDRALLNAIREINSM 117
++ L+T I DA + K+Q R RT ++ +R L A+ EI+ M
Sbjct: 85 MHDKGLTTTIDWKDKDAYGRSISSKKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDRM 144
Query: 118 ADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVS 177
A + + +++ + A+ ++++ ++GRS + +A++ LY ACR+EG+PR+ +EI VS
Sbjct: 145 ASALGVPRSVREVASVIYRRALKEDLIRGRSIEGVATSALYAACRKEGIPRSLEEISEVS 204
Query: 178 KISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDI 237
++ +KEIGR ++ I + L + + ++ RFCS L L VQ A I K E +
Sbjct: 205 RVERKEIGRTYRYISQELGLEMRPVDPKKYVPRFCSELELSEEVQTKANEIIEKTAEEGL 264
Query: 238 VPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
+ G+SP AAAAIY AS ++K++Q+E+ D+A V EVTIR Y+
Sbjct: 265 LSGKSPTGYAAAAIYAASLLCNEKKTQREVADVAQVTEVTIRNRYQ 310
>gi|397772845|ref|YP_006540391.1| transcription factor TFIIB cyclin-related protein [Natrinema sp.
J7-2]
gi|448337167|ref|ZP_21526249.1| transcription factor TFIIB cyclin-related protein [Natrinema
pallidum DSM 3751]
gi|448340531|ref|ZP_21529502.1| transcription factor TFIIB cyclin-related protein [Natrinema gari
JCM 14663]
gi|448346310|ref|ZP_21535196.1| transcription factor TFIIB cyclin-related protein [Natrinema
altunense JCM 12890]
gi|448400256|ref|ZP_21571323.1| transcription factor TFIIB cyclin-related protein [Haloterrigena
limicola JCM 13563]
gi|397681938|gb|AFO56315.1| transcription factor TFIIB cyclin-related protein [Natrinema sp.
J7-2]
gi|445626513|gb|ELY79856.1| transcription factor TFIIB cyclin-related protein [Natrinema
pallidum DSM 3751]
gi|445629964|gb|ELY83234.1| transcription factor TFIIB cyclin-related protein [Natrinema gari
JCM 14663]
gi|445632899|gb|ELY86105.1| transcription factor TFIIB cyclin-related protein [Natrinema
altunense JCM 12890]
gi|445667796|gb|ELZ20436.1| transcription factor TFIIB cyclin-related protein [Haloterrigena
limicola JCM 13563]
Length = 320
Score = 169 bits (428), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 102/286 (35%), Positives = 161/286 (56%), Gaps = 11/286 (3%)
Query: 8 CYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPL 67
C E L++D G+ IC +CGLVV + ID G EWR F N + + SRVG P
Sbjct: 26 CPECESDNLVKDSDRGELICEDCGLVVEEEQIDPGPEWRAF-NHQERQEKSRVGAPTTQT 84
Query: 68 LNGSDLSTMIGPGRGDASFDGFG---------MSKYQNR-RTMNSSDRALLNAIREINSM 117
++ L+T I DA + K+Q R RT ++ +R L A+ EI+ M
Sbjct: 85 MHDKGLTTTIDWKDKDAYGRSISSKKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDRM 144
Query: 118 ADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVS 177
A + + +++ + A+ ++++ ++GRS + +A++ LY ACR+EG+PR+ +EI VS
Sbjct: 145 ASALGVPRSVREVASVIYRRALKEDLIRGRSIEGVATSALYAACRKEGIPRSLEEISEVS 204
Query: 178 KISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDI 237
++ +KEIGR ++ I + L + + ++ RFCS L L VQ A I K E +
Sbjct: 205 RVERKEIGRTYRYISQELGLEMRPVDPKKYVPRFCSELELSEEVQTKANEIIEKTAEEGL 264
Query: 238 VPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
+ G+SP AAAAIY AS ++K++Q+E+ D+A V EVTIR Y+
Sbjct: 265 LSGKSPTGYAAAAIYAASLLCNEKKTQREVADVAQVTEVTIRNRYQ 310
>gi|284165857|ref|YP_003404136.1| transcription factor TFIIB cyclin-related protein [Haloterrigena
turkmenica DSM 5511]
gi|336252199|ref|YP_004595306.1| transcription initiation factor IIB [Halopiger xanaduensis SH-6]
gi|448313767|ref|ZP_21503479.1| transcription initiation factor IIB [Natronolimnobius
innermongolicus JCM 12255]
gi|448350243|ref|ZP_21539062.1| transcription initiation factor IIB [Natrialba taiwanensis DSM
12281]
gi|448362255|ref|ZP_21550866.1| transcription initiation factor IIB [Natrialba asiatica DSM 12278]
gi|448369894|ref|ZP_21556347.1| transcription initiation factor IIB [Natrialba aegyptia DSM 13077]
gi|448391654|ref|ZP_21566749.1| transcription initiation factor IIB [Haloterrigena salina JCM
13891]
gi|284015512|gb|ADB61463.1| Transcription factor TFIIB cyclin-related protein [Haloterrigena
turkmenica DSM 5511]
gi|335336188|gb|AEH35427.1| Transcription initiation factor IIB [Halopiger xanaduensis SH-6]
gi|445597077|gb|ELY51155.1| transcription initiation factor IIB [Natronolimnobius
innermongolicus JCM 12255]
gi|445637750|gb|ELY90898.1| transcription initiation factor IIB [Natrialba taiwanensis DSM
12281]
gi|445648776|gb|ELZ01724.1| transcription initiation factor IIB [Natrialba asiatica DSM 12278]
gi|445650334|gb|ELZ03258.1| transcription initiation factor IIB [Natrialba aegyptia DSM 13077]
gi|445665066|gb|ELZ17744.1| transcription initiation factor IIB [Haloterrigena salina JCM
13891]
Length = 320
Score = 169 bits (428), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 102/286 (35%), Positives = 161/286 (56%), Gaps = 11/286 (3%)
Query: 8 CYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPL 67
C E L++D G+ IC +CGLVV + ID G EWR F N + + SRVG P
Sbjct: 26 CPECESDNLVKDSDRGELICEDCGLVVEEEKIDPGPEWRAF-NHQERQEKSRVGAPTTQT 84
Query: 68 LNGSDLSTMIGPGRGDASFDGFG---------MSKYQNR-RTMNSSDRALLNAIREINSM 117
++ L+T I DA + K+Q R RT ++ +R L A+ EI+ M
Sbjct: 85 MHDKGLTTTIDWKDKDAYGRSISSKKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDRM 144
Query: 118 ADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVS 177
A + + +++ + A+ ++++ ++GRS + +A++ LY ACR+EG+PR+ +EI VS
Sbjct: 145 ASALGVPRSVREVASVIYRRALKEDLIRGRSIEGVATSALYAACRKEGIPRSLEEISEVS 204
Query: 178 KISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDI 237
++ +KEIGR ++ I + L + + ++ RFCS L L VQ A I K E +
Sbjct: 205 RVERKEIGRTYRYISQELGLEMRPVDPKKYVPRFCSELELSEEVQTKANEIIEKTAEEGL 264
Query: 238 VPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
+ G+SP AAAAIY AS ++K++Q+E+ D+A V EVTIR Y+
Sbjct: 265 LSGKSPTGYAAAAIYAASLLCNEKKTQREVADVAQVTEVTIRNRYQ 310
>gi|429192472|ref|YP_007178150.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natronobacterium gregoryi SP2]
gi|448325884|ref|ZP_21515262.1| transcription initiation factor IIB [Natronobacterium gregoryi SP2]
gi|429136690|gb|AFZ73701.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natronobacterium gregoryi SP2]
gi|445613976|gb|ELY67661.1| transcription initiation factor IIB [Natronobacterium gregoryi SP2]
Length = 320
Score = 169 bits (428), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 102/286 (35%), Positives = 161/286 (56%), Gaps = 11/286 (3%)
Query: 8 CYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPL 67
C E L++D G+ IC +CGLVV + ID G EWR F N + + SRVG P
Sbjct: 26 CPECESDNLVKDSDRGELICEDCGLVVEEEKIDPGPEWRAF-NHQERQEKSRVGAPTTQT 84
Query: 68 LNGSDLSTMIGPGRGDASFDGFG---------MSKYQNR-RTMNSSDRALLNAIREINSM 117
++ L+T I DA + K+Q R RT ++ +R L A+ EI+ M
Sbjct: 85 MHDKGLTTTIDWKDKDAYGRSISSKKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDRM 144
Query: 118 ADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVS 177
A + + +++ + A+ ++++ ++GRS + +A++ LY ACR+EG+PR+ +EI VS
Sbjct: 145 ASALGVPRSVREVASVIYRRALKEDLIRGRSIEGVATSALYAACRKEGIPRSLEEISEVS 204
Query: 178 KISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDI 237
++ +KEIGR ++ I + L + + ++ RFCS L L VQ A I K E +
Sbjct: 205 RVERKEIGRTYRYISQELGLEMRPVDPKKYVPRFCSELELSEEVQTKANEIIEKTAEEGL 264
Query: 238 VPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
+ G+SP AAAAIY AS ++K++Q+E+ D+A V EVTIR Y+
Sbjct: 265 LSGKSPTGYAAAAIYAASLLCNEKKTQREVADVAQVTEVTIRNRYQ 310
>gi|289579995|ref|YP_003478461.1| transcription factor TFIIB cyclin-like protein [Natrialba magadii
ATCC 43099]
gi|448281233|ref|ZP_21472540.1| transcription factor TFIIB cyclin-like protein [Natrialba magadii
ATCC 43099]
gi|448352650|ref|ZP_21541431.1| transcription factor TFIIB cyclin-like protein [Natrialba
hulunbeirensis JCM 10989]
gi|448358870|ref|ZP_21547544.1| transcription factor TFIIB cyclin-like protein [Natrialba
chahannaoensis JCM 10990]
gi|289529548|gb|ADD03899.1| Transcription factor TFIIB cyclin-related protein [Natrialba
magadii ATCC 43099]
gi|445579163|gb|ELY33559.1| transcription factor TFIIB cyclin-like protein [Natrialba magadii
ATCC 43099]
gi|445641929|gb|ELY95000.1| transcription factor TFIIB cyclin-like protein [Natrialba
hulunbeirensis JCM 10989]
gi|445644550|gb|ELY97563.1| transcription factor TFIIB cyclin-like protein [Natrialba
chahannaoensis JCM 10990]
Length = 320
Score = 169 bits (428), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 102/286 (35%), Positives = 161/286 (56%), Gaps = 11/286 (3%)
Query: 8 CYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPL 67
C E L++D G+ IC +CGLVV + ID G EWR F N + + SRVG P
Sbjct: 26 CPECESDNLVKDSDRGELICEDCGLVVEEEKIDPGPEWRAF-NHQERQEKSRVGAPTTQT 84
Query: 68 LNGSDLSTMIGPGRGDASFDGFG---------MSKYQNR-RTMNSSDRALLNAIREINSM 117
++ L+T I DA + K+Q R RT ++ +R L A+ EI+ M
Sbjct: 85 MHDKGLTTTIDWKDKDAYGRSISSKKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDRM 144
Query: 118 ADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVS 177
A + + +++ + A+ ++++ ++GRS + +A++ LY ACR+EG+PR+ +EI VS
Sbjct: 145 ASALGVPRSVREVASVIYRRALKEDLIRGRSIEGVATSALYAACRKEGIPRSLEEISEVS 204
Query: 178 KISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDI 237
++ +KEIGR ++ I + L + + ++ RFCS L L VQ A I K E +
Sbjct: 205 RVERKEIGRTYRYISQELGLEMRPVDPKKYVPRFCSELELSEEVQTKANEIIEKTAEEGL 264
Query: 238 VPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
+ G+SP AAAAIY AS ++K++Q+E+ D+A V EVTIR Y+
Sbjct: 265 LSGKSPTGYAAAAIYAASLLCNEKKTQREVADVAQVTEVTIRNRYQ 310
>gi|383621854|ref|ZP_09948260.1| transcription initiation factor IIB [Halobiforma lacisalsi AJ5]
gi|448702704|ref|ZP_21700137.1| transcription initiation factor IIB [Halobiforma lacisalsi AJ5]
gi|445777265|gb|EMA28235.1| transcription initiation factor IIB [Halobiforma lacisalsi AJ5]
Length = 320
Score = 169 bits (428), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 102/286 (35%), Positives = 161/286 (56%), Gaps = 11/286 (3%)
Query: 8 CYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPL 67
C E L++D G+ IC +CGLVV + ID G EWR F N + + SRVG P
Sbjct: 26 CPECDSDNLVKDSDRGELICEDCGLVVEEEKIDPGPEWRAF-NHQERQEKSRVGAPTTQT 84
Query: 68 LNGSDLSTMIGPGRGDASFDGFG---------MSKYQNR-RTMNSSDRALLNAIREINSM 117
++ L+T I DA + K+Q R RT ++ +R L A+ EI+ M
Sbjct: 85 MHDKGLTTTIDWKDKDAYGRSISSKKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDRM 144
Query: 118 ADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVS 177
A + + +++ + A+ ++++ ++GRS + +A++ LY ACR+EG+PR+ +EI VS
Sbjct: 145 ASALGVPRSVREVASVIYRRALKEDLIRGRSIEGVATSALYAACRKEGIPRSLEEISEVS 204
Query: 178 KISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDI 237
++ +KEIGR ++ I + L + + ++ RFCS L L VQ A I K E +
Sbjct: 205 RVERKEIGRTYRYISQELGLEMRPVDPKKYVPRFCSELELSEEVQTKANEIIEKTAEEGL 264
Query: 238 VPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
+ G+SP AAAAIY AS ++K++Q+E+ D+A V EVTIR Y+
Sbjct: 265 LSGKSPTGYAAAAIYAASLLCNEKKTQREVADVAQVTEVTIRNRYQ 310
>gi|448306239|ref|ZP_21496148.1| transcription initiation factor IIB [Natronorubrum bangense JCM
10635]
gi|445598653|gb|ELY52708.1| transcription initiation factor IIB [Natronorubrum bangense JCM
10635]
Length = 320
Score = 169 bits (428), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 102/286 (35%), Positives = 160/286 (55%), Gaps = 11/286 (3%)
Query: 8 CYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPL 67
C E L++D G+ IC +CGLVV + ID G EWR F N + SRVG P
Sbjct: 26 CPECESENLVKDSDRGELICEDCGLVVEEEKIDPGPEWRAF-NHQERQQKSRVGAPTTQT 84
Query: 68 LNGSDLSTMIGPGRGDASFDGFG---------MSKYQNR-RTMNSSDRALLNAIREINSM 117
++ L+T I DA + K+Q R RT ++ +R L A+ EI+ M
Sbjct: 85 MHDKGLTTTIDWKDKDAYGRSISSKKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDRM 144
Query: 118 ADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVS 177
A + + +++ + A+ ++++ ++GRS + +A++ LY ACR+EG+PR+ +EI VS
Sbjct: 145 ASALGVPRSVREVASVIYRRALKEDLIRGRSIEGVATSALYAACRKEGIPRSLEEISEVS 204
Query: 178 KISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDI 237
++ +KEIGR ++ I + L + + ++ RFCS L L VQ A I K E +
Sbjct: 205 RVERKEIGRTYRYISQELGLEMRPVDPKKYVPRFCSELELSEEVQTKANEIIEKTAEEGL 264
Query: 238 VPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
+ G+SP AAAAIY AS ++K++Q+E+ D+A V EVTIR Y+
Sbjct: 265 LSGKSPTGYAAAAIYAASLLCNEKKTQREVADVAQVTEVTIRNRYQ 310
>gi|55376957|ref|YP_134807.1| transcription initiation factor IIB [Haloarcula marismortui ATCC
43049]
gi|448634689|ref|ZP_21675087.1| transcription initiation factor IIB [Haloarcula vallismortis ATCC
29715]
gi|448640892|ref|ZP_21677679.1| transcription initiation factor IIB [Haloarcula sinaiiensis ATCC
33800]
gi|448651198|ref|ZP_21680267.1| transcription initiation factor IIB [Haloarcula californiae ATCC
33799]
gi|448678748|ref|ZP_21689755.1| transcription initiation factor IIB [Haloarcula argentinensis DSM
12282]
gi|448689160|ref|ZP_21694897.1| transcription initiation factor IIB [Haloarcula japonica DSM 6131]
gi|55229682|gb|AAV45101.1| transcription initiation factor IIB [Haloarcula marismortui ATCC
43049]
gi|445749662|gb|EMA01107.1| transcription initiation factor IIB [Haloarcula vallismortis ATCC
29715]
gi|445761417|gb|EMA12665.1| transcription initiation factor IIB [Haloarcula sinaiiensis ATCC
33800]
gi|445770725|gb|EMA21783.1| transcription initiation factor IIB [Haloarcula californiae ATCC
33799]
gi|445772735|gb|EMA23780.1| transcription initiation factor IIB [Haloarcula argentinensis DSM
12282]
gi|445779030|gb|EMA29972.1| transcription initiation factor IIB [Haloarcula japonica DSM 6131]
Length = 319
Score = 169 bits (428), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 97/272 (35%), Positives = 155/272 (56%), Gaps = 11/272 (4%)
Query: 22 AGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLSTMIGPGR 81
G+ +C +CGLV+ D ID G EWR F N SRVG P ++ L+T I
Sbjct: 40 GGELVCEDCGLVIEDENIDRGPEWRAF-NHSERQSKSRVGAPTTQTMHDKGLTTQIDWKD 98
Query: 82 GDASFDGFG---------MSKYQNR-RTMNSSDRALLNAIREINSMADRINLTKTIVDRA 131
DA + K+Q R RT ++ +R L A+ EI+ MA + + +++ + A
Sbjct: 99 KDAYGRSLSSEKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDRMASALGVPRSVREVA 158
Query: 132 NNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGRCFKLI 191
+ ++++ + ++GRS + +A+ACLY ACRQEG+PR+ +E+ VS++ +KEIGR ++ +
Sbjct: 159 SVIYRRALNEDLIRGRSIEGVATACLYAACRQEGIPRSLEEVSDVSRVEQKEIGRTYRYV 218
Query: 192 LKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAI 251
+ LE ++ + ++ RF S L L VQ A I E ++ G+SP AAAAI
Sbjct: 219 AQELELKMEPVDPKQYVPRFASELELSEEVQSKANEIIDTTAEQGLLSGKSPTGYAAAAI 278
Query: 252 YMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
Y AS ++K++Q+E+ D+A V EVTIR Y+
Sbjct: 279 YAASLLCNEKKTQREVADVAQVTEVTIRNRYQ 310
>gi|344211069|ref|YP_004795389.1| transcription initiation factor IIB [Haloarcula hispanica ATCC
33960]
gi|448667562|ref|ZP_21686062.1| transcription initiation factor IIB [Haloarcula amylolytica JCM
13557]
gi|343782424|gb|AEM56401.1| transcription initiation factor IIB [Haloarcula hispanica ATCC
33960]
gi|445770130|gb|EMA21198.1| transcription initiation factor IIB [Haloarcula amylolytica JCM
13557]
Length = 319
Score = 169 bits (428), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 97/272 (35%), Positives = 155/272 (56%), Gaps = 11/272 (4%)
Query: 22 AGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLSTMIGPGR 81
G+ +C +CGLV+ D ID G EWR F N SRVG P ++ L+T I
Sbjct: 40 GGELVCEDCGLVIEDENIDRGPEWRAF-NHSERQSKSRVGAPTTQTMHDKGLTTQIDWKD 98
Query: 82 GDASFDGFG---------MSKYQNR-RTMNSSDRALLNAIREINSMADRINLTKTIVDRA 131
DA + K+Q R RT ++ +R L A+ EI+ MA + + +++ + A
Sbjct: 99 KDAYGRSLSSEKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDRMASALGVPRSVREVA 158
Query: 132 NNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGRCFKLI 191
+ ++++ + ++GRS + +A+ACLY ACRQEG+PR+ +E+ VS++ +KEIGR ++ +
Sbjct: 159 SVIYRRALNEDLIRGRSIEGVATACLYAACRQEGIPRSLEEVSDVSRVEQKEIGRTYRYV 218
Query: 192 LKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAI 251
+ LE ++ + ++ RF S L L VQ A I E ++ G+SP AAAAI
Sbjct: 219 AQELELKMEPVDPKQYVPRFASELELSEEVQSKANEIIDTTAEQGLLSGKSPTGYAAAAI 278
Query: 252 YMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
Y AS ++K++Q+E+ D+A V EVTIR Y+
Sbjct: 279 YAASLLCNEKKTQREVADVAQVTEVTIRNRYQ 310
>gi|403350014|gb|EJY74453.1| Transcription initiation factor IIB [Oxytricha trifallax]
Length = 388
Score = 169 bits (428), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 96/301 (31%), Positives = 159/301 (52%), Gaps = 8/301 (2%)
Query: 8 CYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKS--GVDPSRVGGPEN 65
C E A L+ ++ G +C CGLV R+ID SEWRTFS+E S G +PSRVGG N
Sbjct: 91 CDECKRAMLVTNHVEGTLVCQGCGLVQLSRIIDDSSEWRTFSSETSNGGSNPSRVGGKLN 150
Query: 66 PLLNGSDLSTMIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADRINLTK 125
P L+ + T + G+G + + K+ +R ++ + D+ + +R I A +NL +
Sbjct: 151 PYLSNHGIDTQV-TGKGASE-----IQKWSDRSSLTAKDKLITQGLRMIKEQAHLLNLKE 204
Query: 126 TIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIG 185
+ +A+ ++K++ D LKG+S + ++ A R G P++ K I + ++++ KE+
Sbjct: 205 AAITKASEIYKEIEDRGILKGKSVKGKVAGAIFFASRLVGQPKSLKHILSATEVTVKELN 264
Query: 186 RCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPIS 245
C K I + IT+ D + C+ L L V AA A L+I GR P +
Sbjct: 265 SCLKRIRELFPDERVTITSKDIARQACNRLGLAMDVVYAAEMTAENITNLEIATGRQPQT 324
Query: 246 VAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKLFPQDFVFHTPIHE 305
+A AI++ +Q S DK+S +I + + E TI+Q+YK +Y + ++ P + PI
Sbjct: 325 IAGVAIFIITQLSVDKKSCADIANGVQITEQTIKQAYKDIYEYRHQILPVAWKSKEPIES 384
Query: 306 L 306
L
Sbjct: 385 L 385
>gi|242398518|ref|YP_002993942.1| Transcription initiation factor IIB [Thermococcus sibiricus MM 739]
gi|242264911|gb|ACS89593.1| Transcription initiation factor IIB [Thermococcus sibiricus MM 739]
Length = 299
Score = 169 bits (428), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 96/291 (32%), Positives = 160/291 (54%), Gaps = 8/291 (2%)
Query: 1 MNINKVCCYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRV 60
M ++VC D + D G+ IC+ CG V+ + +ID+G EWR F + SR
Sbjct: 1 MTKHRVCPVCGSD-KFVYDPERGEIICANCGFVIQENIIDMGPEWRAFDASQRE-KRSRT 58
Query: 61 GGPENPLLNGSDLSTMIGPGR---GDASFDGFGMSKYQNR-RTMNSSDRALLNAIREINS 116
G PE+ LL+ LST IG R G + + K+Q+R R ++++R L A+ E++
Sbjct: 59 GAPESILLHDKGLSTDIGYDRNVKGLMREKIYRLRKWQSRLRVSDAAERNLAFALSELDR 118
Query: 117 MADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAV 176
+ R+NL K + + A L++ ++GRS +++ +AC+Y ACR +PRT EI +
Sbjct: 119 LGARLNLPKHVEEEAARLYRDAVKKGLIRGRSIESVIAACVYAACRLLKIPRTLDEIADM 178
Query: 177 SKISKKEIGRCFKLILKALETSVD--LITTGDFMSRFCSNLSLPNMVQKAATHIARKAVE 234
+K+ KKEIGR F+ I + L + + D++++F L L ++ A + +
Sbjct: 179 AKVDKKEIGRSFRFIARNLNLTPKKLFVKPTDYVNKFADELGLSERTRRRAIELLDQVYN 238
Query: 235 LDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLM 285
+ + G+SP + AAA+Y+A +KR+Q+E+ + A V EVT+R YK M
Sbjct: 239 MGLTSGKSPAGLVAAALYIAGLLEGEKRTQREVAEAARVTEVTVRNRYKEM 289
Score = 42.0 bits (97), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 44/82 (53%)
Query: 114 INSMADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEI 173
+N AD + L++ RA L QV++ G+S + +A LYIA EG RT +E+
Sbjct: 212 VNKFADELGLSERTRRRAIELLDQVYNMGLTSGKSPAGLVAAALYIAGLLEGEKRTQREV 271
Query: 174 CAVSKISKKEIGRCFKLILKAL 195
+++++ + +K +++ L
Sbjct: 272 AEAARVTEVTVRNRYKEMVEKL 293
>gi|14520892|ref|NP_126367.1| transcription initiation factor IIB [Pyrococcus abyssi GE5]
gi|13878809|sp|Q9V0V5.1|TF2B_PYRAB RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|5458109|emb|CAB49598.1| TATA box binding protein TFIIB-BBRE complex, chain B [Pyrococcus
abyssi GE5]
gi|380741440|tpe|CCE70074.1| TPA: transcription initiation factor IIB [Pyrococcus abyssi GE5]
Length = 300
Score = 169 bits (427), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 91/274 (33%), Positives = 157/274 (57%), Gaps = 7/274 (2%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLST 75
I D G+ +C+ CG V+ + ++D+G EWR F + SR G PE+ LL+ LST
Sbjct: 15 FIYDPERGEIVCARCGYVIEENIVDMGPEWRAFDASQRE-KRSRTGAPESILLHDKGLST 73
Query: 76 MIGPGR---GDASFDGFGMSKYQNR-RTMNSSDRALLNAIREINSMADRINLTKTIVDRA 131
IG R G + + K+Q+R R ++++R L A+ E++ + ++ L K + + A
Sbjct: 74 DIGIDRSLTGLMREKMYRLRKWQSRLRVSDAAERNLAFALSELDRITAQLKLPKHVEEEA 133
Query: 132 NNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGRCFKLI 191
L+++ ++GRS +++ +AC+Y ACR VPRT EI ++++ KKEIGR ++ I
Sbjct: 134 ARLYREAVRKGLIRGRSIESVIAACVYAACRLLKVPRTLDEISDIARVEKKEIGRSYRFI 193
Query: 192 LKALETSVD--LITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAA 249
+ L + + D++++F L L V++ A I +A + + G+SP + AA
Sbjct: 194 ARNLNLTPKKLFVKPTDYVNKFADELGLSEKVRRRAIEILEEAYKRGLTSGKSPAGLVAA 253
Query: 250 AIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
A+Y+AS +KR+Q+E+ ++A V EVT+R YK
Sbjct: 254 ALYIASLLEGEKRTQREVAEVARVTEVTVRNRYK 287
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 52/97 (53%), Gaps = 6/97 (6%)
Query: 208 MSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEI 267
+ R + L LP V++ A + R+AV ++ GRS SV AA +Y A + R+ EI
Sbjct: 116 LDRITAQLKLPKHVEEEAARLYREAVRKGLIRGRSIESVIAACVYAACRLLKVPRTLDEI 175
Query: 268 GDIAGVAEVTIRQSYKLMYPHAS----KLF--PQDFV 298
DIA V + I +SY+ + + + KLF P D+V
Sbjct: 176 SDIARVEKKEIGRSYRFIARNLNLTPKKLFVKPTDYV 212
Score = 42.4 bits (98), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 46/86 (53%)
Query: 114 INSMADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEI 173
+N AD + L++ + RA + ++ + G+S + +A LYIA EG RT +E+
Sbjct: 212 VNKFADELGLSEKVRRRAIEILEEAYKRGLTSGKSPAGLVAAALYIASLLEGEKRTQREV 271
Query: 174 CAVSKISKKEIGRCFKLILKALETSV 199
V+++++ + +K +++ L V
Sbjct: 272 AEVARVTEVTVRNRYKELVEKLGIKV 297
>gi|73668919|ref|YP_304934.1| transcription initiation factor IIB [Methanosarcina barkeri str.
Fusaro]
gi|72396081|gb|AAZ70354.1| Transcription initiation factor IIB (TFIIB) [Methanosarcina barkeri
str. Fusaro]
Length = 337
Score = 169 bits (427), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 109/290 (37%), Positives = 166/290 (57%), Gaps = 11/290 (3%)
Query: 4 NKVCCYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGP 63
K C E L+ DY + +C +CGLV+ +D G EWR F +++ + SRVG P
Sbjct: 37 EKAVCPECGSRNLVHDYERAELVCGDCGLVIDADFVDEGPEWRAFDHDQR-MKRSRVGAP 95
Query: 64 ENPLLNGSDLSTMIGPGRGDASFDG---------FGMSKYQNR-RTMNSSDRALLNAIRE 113
++ LSTMI D+ + + K+Q R R N+++R L A+ E
Sbjct: 96 MTYTIHDKGLSTMIDWRNRDSYGKSISSKNRAQLYRLRKWQRRIRVSNATERNLAFALSE 155
Query: 114 INSMADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEI 173
++ MA + L +T+ + A ++++ D ++GRS + +A+A LY ACRQ VPRT EI
Sbjct: 156 LDRMASALGLPRTVRETAAVVYRKAVDKNLIRGRSIEGVAAAALYAACRQCSVPRTLDEI 215
Query: 174 CAVSKISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAV 233
VS++S+KEIGR ++ I + L + + D++ RFCS L+L VQ + I R+A
Sbjct: 216 EEVSRVSRKEIGRTYRFISRELALKLMPTSPIDYVPRFCSGLNLKGEVQSKSVEILRQAS 275
Query: 234 ELDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
E ++ GR P VAAAAIY+AS ++R+Q+E+ D+AGV EVTIR YK
Sbjct: 276 EKELTSGRGPTGVAAAAIYIASILCGERRTQREVADVAGVTEVTIRNRYK 325
Score = 42.0 bits (97), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 54/96 (56%), Gaps = 1/96 (1%)
Query: 208 MSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEI 267
+ R S L LP V++ A + RKAV+ +++ GRS VAAAA+Y A + S R+ EI
Sbjct: 156 LDRMASALGLPRTVRETAAVVYRKAVDKNLIRGRSIEGVAAAALYAACRQCSVPRTLDEI 215
Query: 268 GDIAGVAEVTIRQSYKLMYPH-ASKLFPQDFVFHTP 302
+++ V+ I ++Y+ + A KL P + + P
Sbjct: 216 EEVSRVSRKEIGRTYRFISRELALKLMPTSPIDYVP 251
>gi|433639225|ref|YP_007284985.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Halovivax ruber XH-70]
gi|448377483|ref|ZP_21560179.1| transcription initiation factor IIB [Halovivax asiaticus JCM 14624]
gi|433291029|gb|AGB16852.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Halovivax ruber XH-70]
gi|445655427|gb|ELZ08272.1| transcription initiation factor IIB [Halovivax asiaticus JCM 14624]
Length = 320
Score = 169 bits (427), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 101/286 (35%), Positives = 161/286 (56%), Gaps = 11/286 (3%)
Query: 8 CYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPL 67
C E L++D G+ +C +CGLVV + ID G EWR F N + + SRVG P
Sbjct: 26 CPECESDNLVKDSDRGELVCQDCGLVVEEEKIDPGPEWRAF-NHQERQEKSRVGAPTTQT 84
Query: 68 LNGSDLSTMIGPGRGDASFDGFG---------MSKYQNR-RTMNSSDRALLNAIREINSM 117
++ L+T I DA + K+Q R RT ++ +R L A+ EI+ M
Sbjct: 85 MHDKGLTTTIDWKDKDAYGRSISSKKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDRM 144
Query: 118 ADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVS 177
A + + +++ + A+ ++++ ++GRS + +A++ LY ACR+EG+PR+ +EI VS
Sbjct: 145 ASALGVPRSVREVASVIYRRALKEDLIRGRSIEGVATSALYAACRKEGIPRSLEEISEVS 204
Query: 178 KISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDI 237
++ +KEIGR ++ I + L + + ++ RFCS L L VQ A I K E +
Sbjct: 205 RVERKEIGRTYRYISQELGLEMRPVDPKKYVPRFCSELELSEEVQTKANEIIEKTAEEGL 264
Query: 238 VPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
+ G+SP AAAAIY AS ++K++Q+E+ D+A V EVTIR Y+
Sbjct: 265 LSGKSPTGYAAAAIYAASLLCNEKKTQREVADVAQVTEVTIRNRYQ 310
>gi|21227874|ref|NP_633796.1| transcription initiation factor IIB [Methanosarcina mazei Go1]
gi|452210347|ref|YP_007490461.1| Transcription initiation factor B [Methanosarcina mazei Tuc01]
gi|332321738|sp|P0CW15.1|TF2B_METMA RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|332321739|sp|P0CW14.1|TF2B_METMZ RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|14586422|emb|CAC42919.1| transcription factor B (TFB) [Methanosarcina mazei]
gi|20906289|gb|AAM31468.1| Transcription initiation factor IIB [Methanosarcina mazei Go1]
gi|452100249|gb|AGF97189.1| Transcription initiation factor B [Methanosarcina mazei Tuc01]
Length = 337
Score = 169 bits (427), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 109/290 (37%), Positives = 166/290 (57%), Gaps = 11/290 (3%)
Query: 4 NKVCCYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGP 63
K C E L+ DY + +C +CGLV+ +D G EWR F +++ + SRVG P
Sbjct: 37 EKAVCPECGSRNLVHDYERAELVCGDCGLVIDADFVDEGPEWRAFDHDQR-MKRSRVGAP 95
Query: 64 ENPLLNGSDLSTMIGPGRGDASFDG---------FGMSKYQNR-RTMNSSDRALLNAIRE 113
++ LSTMI D+ + + K+Q R R N+++R L A+ E
Sbjct: 96 MTYTIHDKGLSTMIDWRNRDSYGKSISSKNRAQLYRLRKWQRRIRVSNATERNLAFALSE 155
Query: 114 INSMADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEI 173
++ MA + L +T+ + A ++++ D ++GRS + +A+A LY ACRQ VPRT EI
Sbjct: 156 LDRMASALGLPRTVRETAAVVYRKAVDKNLIRGRSIEGVAAAALYAACRQCSVPRTLDEI 215
Query: 174 CAVSKISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAV 233
VS++S+KEIGR ++ I + L + + D++ RFCS L+L VQ + I R+A
Sbjct: 216 EEVSRVSRKEIGRTYRFISRELALKLMPTSPIDYVPRFCSGLNLKGEVQSKSVEILRQAS 275
Query: 234 ELDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
E ++ GR P VAAAAIY+AS ++R+Q+E+ D+AGV EVTIR YK
Sbjct: 276 EKELTSGRGPTGVAAAAIYIASILCGERRTQREVADVAGVTEVTIRNRYK 325
Score = 42.0 bits (97), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 54/96 (56%), Gaps = 1/96 (1%)
Query: 208 MSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEI 267
+ R S L LP V++ A + RKAV+ +++ GRS VAAAA+Y A + S R+ EI
Sbjct: 156 LDRMASALGLPRTVRETAAVVYRKAVDKNLIRGRSIEGVAAAALYAACRQCSVPRTLDEI 215
Query: 268 GDIAGVAEVTIRQSYKLMYPH-ASKLFPQDFVFHTP 302
+++ V+ I ++Y+ + A KL P + + P
Sbjct: 216 EEVSRVSRKEIGRTYRFISRELALKLMPTSPIDYVP 251
>gi|448405176|ref|ZP_21572617.1| transcription initiation factor TFB [Haloterrigena limicola JCM
13563]
gi|445662584|gb|ELZ15349.1| transcription initiation factor TFB [Haloterrigena limicola JCM
13563]
Length = 325
Score = 169 bits (427), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 100/286 (34%), Positives = 161/286 (56%), Gaps = 11/286 (3%)
Query: 8 CYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPL 67
C E L+ + + IC ECGLV+ ++ ID G EWR F N + SRVG P
Sbjct: 32 CPECDSGALVASNDSNEIICEECGLVIEEQNIDHGPEWRAF-NHAERQNKSRVGAPTTQT 90
Query: 68 LNGSDLSTMIGPGRGDASFDGFG---------MSKYQNR-RTMNSSDRALLNAIREINSM 117
++ L+T I DA + K+Q R RT ++ +R L A+ EI+ M
Sbjct: 91 MHDKGLTTQIDWKNKDAHGRSISSKKRNQLNRLRKWQERIRTKDAGERNLQFALSEIDRM 150
Query: 118 ADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVS 177
A + + +++ + A+ +++Q ++GRS + +A++CLY CRQEG+PR+ +E+ VS
Sbjct: 151 ASALGVPRSVREVASVIYRQALSEDLIRGRSIEGVATSCLYAGCRQEGIPRSLEEVTEVS 210
Query: 178 KISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDI 237
++ KKEIGR ++ I K L + +++ RFCS+L + V+ A I ++ E +
Sbjct: 211 RVGKKEIGRTYRYIAKELSLEMKPADPKEYVPRFCSDLEVSEEVKMKAIEIIDESAEQGL 270
Query: 238 VPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
+ G+SP AAAAIY AS ++K++QKE+ ++A V EVTIR Y+
Sbjct: 271 LSGKSPTGFAAAAIYAASLLCNEKKTQKEVAEVAQVTEVTIRNRYQ 316
>gi|20089499|ref|NP_615574.1| transcription initiation factor IIB [Methanosarcina acetivorans
C2A]
gi|24212485|sp|Q8TT29.1|TF2B_METAC RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|19914407|gb|AAM04054.1| archaeal transcription factor B [Methanosarcina acetivorans C2A]
Length = 337
Score = 169 bits (427), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 109/290 (37%), Positives = 166/290 (57%), Gaps = 11/290 (3%)
Query: 4 NKVCCYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGP 63
K C E L+ DY + +C +CGLV+ +D G EWR F +++ + SRVG P
Sbjct: 37 EKAVCPECGSRNLVHDYERAELVCGDCGLVIDADFVDEGPEWRAFDHDQR-MKRSRVGAP 95
Query: 64 ENPLLNGSDLSTMIGPGRGDASFDG---------FGMSKYQNR-RTMNSSDRALLNAIRE 113
++ LSTMI D+ + + K+Q R R N+++R L A+ E
Sbjct: 96 MTYTIHDKGLSTMIDWRNRDSYGKSISSKNRAQLYRLRKWQRRIRVSNATERNLAFALSE 155
Query: 114 INSMADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEI 173
++ MA + L +T+ + A ++++ D ++GRS + +A+A LY ACRQ VPRT EI
Sbjct: 156 LDRMASALGLPRTVRETAAVVYRKAVDKNLIRGRSIEGVAAAALYAACRQCSVPRTLDEI 215
Query: 174 CAVSKISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAV 233
VS++S+KEIGR ++ I + L + + D++ RFCS L+L VQ + I R+A
Sbjct: 216 EEVSRVSRKEIGRTYRFISRELALKLMPTSPIDYVPRFCSGLNLKGEVQSKSVEILRQAS 275
Query: 234 ELDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
E ++ GR P VAAAAIY+AS ++R+Q+E+ D+AGV EVTIR YK
Sbjct: 276 EKELTSGRGPTGVAAAAIYIASILCGERRTQREVADVAGVTEVTIRNRYK 325
Score = 42.0 bits (97), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 54/96 (56%), Gaps = 1/96 (1%)
Query: 208 MSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEI 267
+ R S L LP V++ A + RKAV+ +++ GRS VAAAA+Y A + S R+ EI
Sbjct: 156 LDRMASALGLPRTVRETAAVVYRKAVDKNLIRGRSIEGVAAAALYAACRQCSVPRTLDEI 215
Query: 268 GDIAGVAEVTIRQSYKLMYPH-ASKLFPQDFVFHTP 302
+++ V+ I ++Y+ + A KL P + + P
Sbjct: 216 EEVSRVSRKEIGRTYRFISRELALKLMPTSPIDYVP 251
>gi|341582974|ref|YP_004763466.1| transcription initiation factor IIB [Thermococcus sp. 4557]
gi|340810632|gb|AEK73789.1| transcription initiation factor IIB [Thermococcus sp. 4557]
Length = 303
Score = 169 bits (427), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 96/278 (34%), Positives = 159/278 (57%), Gaps = 11/278 (3%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLST 75
L D R G+ +CS CG VV V+D G EWR F ++ +R G P +++ LST
Sbjct: 15 LFYDPRRGEIVCSVCGYVVQQNVVDEGPEWRAFDPDQRA-KRARTGAPMTLMIHDKGLST 73
Query: 76 MIGPGRGDASFDGF-GMSK--------YQNRRTMN-SSDRALLNAIREINSMADRINLTK 125
I D + GM + +Q R +N +++R L A+ E++ MA ++ L +
Sbjct: 74 DIDWRDKDIHGNQITGMYRTKMRRLRMWQRRMRINDAAERNLAFALSELDRMAAQMRLPR 133
Query: 126 TIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIG 185
+ + A +L+++ K ++GRS + + SA LY ACR EG+PRT EI AVSK++KKEIG
Sbjct: 134 RVKEVAASLYRKAVMKKLIRGRSIEGMVSAALYAACRMEGIPRTLDEIAAVSKVTKKEIG 193
Query: 186 RCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPIS 245
R ++ + + L ++ + +++ RF L++ +K A I +A++ I G+ P
Sbjct: 194 RSYRFLARGLNLNLRPTSPIEYVDRFGDALNVSARTKKRAKEILHEAIKRGITSGKGPTG 253
Query: 246 VAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
+AAAA+Y+AS +K++Q+E+ ++A V EVT+R YK
Sbjct: 254 LAAAALYVASLLEGEKKTQREVAEVAHVTEVTVRNRYK 291
Score = 43.9 bits (102), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 42/78 (53%)
Query: 208 MSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEI 267
+ R + + LP V++ A + RKAV ++ GRS + +AA+Y A + R+ EI
Sbjct: 122 LDRMAAQMRLPRRVKEVAASLYRKAVMKKLIRGRSIEGMVSAALYAACRMEGIPRTLDEI 181
Query: 268 GDIAGVAEVTIRQSYKLM 285
++ V + I +SY+ +
Sbjct: 182 AAVSKVTKKEIGRSYRFL 199
>gi|332157709|ref|YP_004422988.1| transcription initiation factor IIB [Pyrococcus sp. NA2]
gi|331033172|gb|AEC50984.1| transcription initiation factor IIB [Pyrococcus sp. NA2]
Length = 300
Score = 169 bits (427), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 91/274 (33%), Positives = 157/274 (57%), Gaps = 7/274 (2%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLST 75
I D G+ +C+ CG V+ + ++D+G EWR F + SR G PE+ LL+ LST
Sbjct: 15 FIYDPERGEIVCARCGYVIEENIVDMGPEWRAFDASQRE-KRSRTGAPESILLHDKGLST 73
Query: 76 MIGPGR---GDASFDGFGMSKYQNR-RTMNSSDRALLNAIREINSMADRINLTKTIVDRA 131
IG R G + + K+Q+R R ++++R L A+ E++ + ++ L K + + A
Sbjct: 74 DIGIDRTLTGLMREKMYRLRKWQSRLRVSDAAERNLAFALSELDRITAQLKLPKHVEEEA 133
Query: 132 NNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGRCFKLI 191
L+++ ++GRS +++ +AC+Y ACR VPRT EI ++++ KKEIGR ++ I
Sbjct: 134 ARLYREAVRRGLIRGRSIESVIAACVYAACRLLKVPRTLDEISDIARVEKKEIGRSYRFI 193
Query: 192 LKALETSVD--LITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAA 249
+ L + + D++++F L L V++ A I +A + + G+SP + AA
Sbjct: 194 ARNLNLTPKKLFVKPTDYVNKFADELGLSERVRRRAIEILEEAYKRGLTSGKSPAGLVAA 253
Query: 250 AIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
A+Y+AS +KR+Q+E+ ++A V EVT+R YK
Sbjct: 254 ALYIASLLEGEKRTQREVAEVARVTEVTVRNRYK 287
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 52/97 (53%), Gaps = 6/97 (6%)
Query: 208 MSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEI 267
+ R + L LP V++ A + R+AV ++ GRS SV AA +Y A + R+ EI
Sbjct: 116 LDRITAQLKLPKHVEEEAARLYREAVRRGLIRGRSIESVIAACVYAACRLLKVPRTLDEI 175
Query: 268 GDIAGVAEVTIRQSYKLMYPHAS----KLF--PQDFV 298
DIA V + I +SY+ + + + KLF P D+V
Sbjct: 176 SDIARVEKKEIGRSYRFIARNLNLTPKKLFVKPTDYV 212
Score = 42.0 bits (97), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 46/86 (53%)
Query: 114 INSMADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEI 173
+N AD + L++ + RA + ++ + G+S + +A LYIA EG RT +E+
Sbjct: 212 VNKFADELGLSERVRRRAIEILEEAYKRGLTSGKSPAGLVAAALYIASLLEGEKRTQREV 271
Query: 174 CAVSKISKKEIGRCFKLILKALETSV 199
V+++++ + +K +++ L V
Sbjct: 272 AEVARVTEVTVRNRYKELVEKLGIKV 297
>gi|448302993|ref|ZP_21492943.1| transcription initiation factor IIB [Natronorubrum sulfidifaciens
JCM 14089]
gi|445594000|gb|ELY48167.1| transcription initiation factor IIB [Natronorubrum sulfidifaciens
JCM 14089]
Length = 310
Score = 169 bits (427), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 102/286 (35%), Positives = 160/286 (55%), Gaps = 11/286 (3%)
Query: 8 CYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPL 67
C E L++D G+ IC +CGLVV + ID G EWR F N + SRVG P
Sbjct: 16 CPECESDNLVKDSDRGELICEDCGLVVEEEKIDPGPEWRAF-NHQERQQKSRVGAPTTQT 74
Query: 68 LNGSDLSTMIGPGRGDASFDGFG---------MSKYQNR-RTMNSSDRALLNAIREINSM 117
++ L+T I DA + K+Q R RT ++ +R L A+ EI+ M
Sbjct: 75 MHDKGLTTTIDWKDKDAYGRSISSKKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDRM 134
Query: 118 ADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVS 177
A + + +++ + A+ ++++ ++GRS + +A++ LY ACR+EG+PR+ +EI VS
Sbjct: 135 ASALGVPRSVREVASVIYRRALKEDLIRGRSIEGVATSALYAACRKEGIPRSLEEISEVS 194
Query: 178 KISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDI 237
++ +KEIGR ++ I + L + + ++ RFCS L L VQ A I K E +
Sbjct: 195 RVERKEIGRTYRYISQELGLEMRPVDPKKYVPRFCSELELSEEVQTKANEIIEKTAEEGL 254
Query: 238 VPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
+ G+SP AAAAIY AS ++K++Q+E+ D+A V EVTIR Y+
Sbjct: 255 LSGKSPTGYAAAAIYAASLLCNEKKTQREVADVAQVTEVTIRNRYQ 300
>gi|448330825|ref|ZP_21520101.1| transcription factor TFIIB cyclin-related protein [Natrinema
versiforme JCM 10478]
gi|445610661|gb|ELY64430.1| transcription factor TFIIB cyclin-related protein [Natrinema
versiforme JCM 10478]
Length = 320
Score = 168 bits (426), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 104/286 (36%), Positives = 163/286 (56%), Gaps = 11/286 (3%)
Query: 8 CYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPL 67
C E L++D G+ IC +CGLVV + ID G EWR F N + + SRVG P
Sbjct: 26 CPECESDNLVKDSDRGELICEDCGLVVEEEQIDPGPEWRAF-NHQERQEKSRVGAPTTQT 84
Query: 68 LNGSDLSTMIGP------GRGDASFDGFGM---SKYQNR-RTMNSSDRALLNAIREINSM 117
++ L+T I GR +S M K+Q R RT ++ +R L A+ EI+ M
Sbjct: 85 MHDKGLTTTIDWKDKDDYGRSISSKKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDRM 144
Query: 118 ADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVS 177
A + + +++ + A+ ++++ ++GRS + +A++ LY ACR+EG+PR+ +EI VS
Sbjct: 145 ASALGVPRSVREVASVIYRRALKEDLIRGRSIEGVATSALYAACRKEGIPRSLEEISEVS 204
Query: 178 KISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDI 237
++ +KEIGR ++ I + L + + ++ RFCS L L VQ A I K E +
Sbjct: 205 RVERKEIGRTYRYISQELGLEMRPVDPKKYVPRFCSELELSEEVQTKANEIIEKTAEEGL 264
Query: 238 VPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
+ G+SP AAAAIY AS ++K++Q+E+ D+A V EVTIR Y+
Sbjct: 265 LSGKSPTGYAAAAIYAASLLCNEKKTQREVADVAQVTEVTIRNRYQ 310
>gi|222632446|gb|EEE64578.1| hypothetical protein OsJ_19430 [Oryza sativa Japonica Group]
Length = 287
Score = 168 bits (426), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 110/298 (36%), Positives = 160/298 (53%), Gaps = 53/298 (17%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSG--VDPSRVGGPENPLL----N 69
++ D+ GD IC+EC LV+ R ID SEWRTF+N+ + DP+RVG +P L
Sbjct: 21 VVLDHTTGDTICTECALVLDARYIDETSEWRTFANDGASDDRDPNRVGDRADPFLPDHVG 80
Query: 70 GSDLSTMIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADRINLTKTIVD 129
G+ ++ P +G I MADR+ L TI D
Sbjct: 81 GTTIAYSSAPPKG-------------------------------IADMADRLGLVATIRD 109
Query: 130 RANNLFKQVHDG--KNL-KGRSNDAIASACLYIACRQEGVPRTFKEICAVS---KISKKE 183
RA +FK++ + K L +GR+ DA+ +ACL+IACR EG+PRT+KE+ +V+ +KKE
Sbjct: 110 RAKEVFKKLGEAPTKGLPRGRNRDAVYAACLFIACRNEGMPRTYKELASVTAEGAAAKKE 169
Query: 184 IGRCFKLILKAL-------ETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVE-L 235
IGR LI K L + ++ + D++ RFCS L L + +AA R+ E L
Sbjct: 170 IGRLTTLIKKHLGDQGEGRAMDIGVVRSTDYLRRFCSRLGLGHQDVRAAGDAVRRLEERL 229
Query: 236 DIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKLF 293
D+ R+P S+AAA IYM Q + +S +++ GVAE TI ++K + PHAS LF
Sbjct: 230 DVR--RNPESIAAAIIYMVVQRAGGSKSVRDVSTATGVAEGTITAAHKELAPHASVLF 285
>gi|301098814|ref|XP_002898499.1| transcription initiation factor IIB, putative [Phytophthora
infestans T30-4]
gi|262104924|gb|EEY62976.1| transcription initiation factor IIB, putative [Phytophthora
infestans T30-4]
Length = 308
Score = 168 bits (426), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 103/295 (34%), Positives = 169/295 (57%), Gaps = 11/295 (3%)
Query: 8 CYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDP---SRVGGPE 64
C E ++ D+ AGD +C +CG+++G+R+ID EWRTF+N+ G DP SRVG
Sbjct: 10 CRECGSKDVVTDFSAGDVVCRDCGMILGERIIDDSPEWRTFANDDRGGDPAAKSRVGDVA 69
Query: 65 NPLLNGSDLST-MIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIRE----INSMAD 119
+ L+ LST ++ P +G DG K+ +R SSD A + ++ I +AD
Sbjct: 70 DARLDSLSLSTYLVDPKKGGGGADGEAGRKH--KRPNISSDSAKVKRMQRNMARIQEVAD 127
Query: 120 RINLTKTIVDRANNLFKQVH-DGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSK 178
++L K IV+ A +++ + G N++G +++A A L+IACR+ G R+ KE S
Sbjct: 128 YLSLPKKIVEIALDVYAEAEKQGVNMRGPERESMAVAVLFIACRKAGNARSLKEFEEASG 187
Query: 179 ISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIV 238
I K+ IG+ F + + L+ V TT +++ RFCS L LPN Q A +A+KA L++
Sbjct: 188 IPKRRIGKSFMSLQRRLDLEVKQATTEEYVQRFCSRLGLPNKTQMIAHTVAKKADSLELS 247
Query: 239 PGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKLF 293
G+ P++VAA+ IY+ + ++ KRS +EI D+ + E ++++ K + LF
Sbjct: 248 NGQPPVAVAASVIYLVAAYTNAKRSIQEISDVTMIGEKSMKRVCKELNKSRVVLF 302
>gi|288930943|ref|YP_003435003.1| transcription factor TFIIB cyclin-related protein [Ferroglobus
placidus DSM 10642]
gi|288893191|gb|ADC64728.1| Transcription factor TFIIB cyclin-related protein [Ferroglobus
placidus DSM 10642]
Length = 346
Score = 168 bits (426), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 98/292 (33%), Positives = 164/292 (56%), Gaps = 22/292 (7%)
Query: 8 CYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPL 67
C E L+ D+ G+ C +CG+VV D +D G EWR++ +E+ G+ +R G P
Sbjct: 53 CPECGSPRLVTDHSRGEVFCQDCGIVVEDARLDYGPEWRSYDSER-GMQRARAGPPVVLT 111
Query: 68 LNGSDLSTMIGPGRGDASFDGFG-------------MSKYQNR-RTMNSSDRALLNAIRE 113
L+ +T IG R D G + K+Q++ RT +S++R L+ ++ E
Sbjct: 112 LHDKGFTTTIGNDR-----DSHGNPLSPKTRIQFTRLRKWQSKIRTNSSAERNLVRSLME 166
Query: 114 INSMADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEI 173
+ + + L K+I +RA ++++V +GR D+I +A +Y ACR+ G+PRT E+
Sbjct: 167 LERITSSLGLPKSITERAALIYRRVVSNNLTRGRCIDSIVAAAVYAACREAGLPRTLDEV 226
Query: 174 CAVSKISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAV 233
A S + K+ +GR ++ + + L IT+ D++ + C+ L + VQ+ A I +A
Sbjct: 227 AAHSSVDKRSVGRAYRFLARTLGLKPAPITSTDYVPKICAALGVSGEVQERALEIVNEA- 285
Query: 234 ELDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLM 285
E +V RSP VAAAA+Y+AS ++R+Q+E+ +AGV EVTIR YK++
Sbjct: 286 EKSMVS-RSPAGVAAAAVYIASILLGERRTQREVAGVAGVTEVTIRNCYKMI 336
>gi|333911004|ref|YP_004484737.1| transcription initiation factor IIB [Methanotorris igneus Kol 5]
gi|333751593|gb|AEF96672.1| Transcription initiation factor IIB [Methanotorris igneus Kol 5]
Length = 343
Score = 168 bits (425), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 100/283 (35%), Positives = 159/283 (56%), Gaps = 11/283 (3%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLST 75
+I+DY + +C CG V+ + DVG EWR F +E+ V SRVG P ++ LST
Sbjct: 55 VIKDYERAEIVCENCGCVLQQNLFDVGPEWRAFDHEQR-VKRSRVGAPMTYTIHDKGLST 113
Query: 76 MIGPGRGDA---------SFDGFGMSKYQNR-RTMNSSDRALLNAIREINSMADRINLTK 125
+I D+ + + K+Q R R ++S+R L A+ E++ +A ++ L +
Sbjct: 114 VIDWRNKDSYGKDISANKRAQLYRLRKWQRRIRVSDASERNLAFALSELDRIASKLGLPR 173
Query: 126 TIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIG 185
+ + A L++ + ++GRS + +A+A LY ACR+ VPRT EI S++ +KEIG
Sbjct: 174 NVRENAAVLYRGAVEKGLIRGRSIEGVAAAALYAACRRCRVPRTLDEIAEASRVDRKEIG 233
Query: 186 RCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPIS 245
R ++ + + L + D++ RF S L LP V+ A I +KA E + GR P
Sbjct: 234 RTYRFLARELGIKLAPTNPIDYVPRFASELGLPGEVESKAIAILQKAAEKGLTSGRGPTG 293
Query: 246 VAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPH 288
VAAAAIY+AS ++R+Q+++ ++AGV EVTIR YK + H
Sbjct: 294 VAAAAIYIASVLLGNRRTQRDVAEVAGVTEVTIRNRYKELTEH 336
>gi|399949697|gb|AFP65355.1| TATA binding protein of transcription factor IID [Chroomonas
mesostigmatica CCMP1168]
Length = 343
Score = 167 bits (424), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 105/307 (34%), Positives = 164/307 (53%), Gaps = 18/307 (5%)
Query: 8 CYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPL 67
C E L+ED + GD +C ECG+V+ ++D SEWR FS + DP R+G P + L
Sbjct: 21 CIECGSENLLEDMKQGDIVCKECGMVLTGHIVDFTSEWRIFSEDNKKSDPIRIGDPLHEL 80
Query: 68 LNGSDLSTMIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADRINLTKTI 127
L + T+I G ++ + K QNR T+ +DR L +I ++I L I
Sbjct: 81 LEKNP-GTLISKGLKGSNILNEKLLKTQNRGTVQKTDRFLTQVFSKIGLFLEKICLFMGI 139
Query: 128 VDRANNLFKQVHDGKNLKG---------RSNDAIAS--ACLYIACRQEGVPRTFKEICAV 176
R FK D L+ R N+ ++S A ++I R E +PRTFKEI
Sbjct: 140 KKRVEEFFKLYFDYLTLRTDGTRSRYSLRKNETVSSIAASIFIVSRNEKIPRTFKEISEA 199
Query: 177 SKISKKEIGRCFKLILKALE-TSVD-LITTGDFMSRFCSNLSLPNMVQKAATHIARKAVE 234
+ +SKK + + I ++L T++ L T DF+SRFCS L LP+ V + +A+ +
Sbjct: 200 TGVSKKALSARVRAIERSLRGTNISKLHNTDDFVSRFCSKLGLPSFVSDLSKKLAKFMKD 259
Query: 235 LDIVPGRSPISVAAAAIYMASQAS--SDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKL 292
+ + GR+ ISV+AA+I + +Q + + K K+I AG++E+T+ +YK MYPH K+
Sbjct: 260 QEGLYGRNYISVSAASILLVTQLTNLNLKCPPKKIASAAGISEITLNIAYKSMYPHREKI 319
Query: 293 FPQDFVF 299
D++F
Sbjct: 320 L--DYLF 324
>gi|284163770|ref|YP_003402049.1| transcription factor TFIIB cyclin-related protein [Haloterrigena
turkmenica DSM 5511]
gi|448388030|ref|ZP_21564970.1| transcription factor TFIIB cyclin-related protein [Haloterrigena
salina JCM 13891]
gi|284013425|gb|ADB59376.1| Transcription factor TFIIB cyclin-related protein [Haloterrigena
turkmenica DSM 5511]
gi|445670681|gb|ELZ23278.1| transcription factor TFIIB cyclin-related protein [Haloterrigena
salina JCM 13891]
Length = 319
Score = 167 bits (424), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 103/286 (36%), Positives = 159/286 (55%), Gaps = 11/286 (3%)
Query: 8 CYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPL 67
C E D L+ G+ +C +CGLVV ID G EWR F N SRVG P
Sbjct: 27 CDECSDGTLVTSEDQGELVCDQCGLVVEGSNIDHGPEWRAF-NHSERQSKSRVGAPTTQT 85
Query: 68 LNGSDLSTMIGPGRGDA-----SFDGFG----MSKYQNR-RTMNSSDRALLNAIREINSM 117
++ L+T I DA S D + K+Q R RT ++ +R L A+ EI+ M
Sbjct: 86 MHDKGLTTSIDWKNQDAYGRSISADKRSQMRRLRKWQERIRTKDAGERNLQFALSEIDRM 145
Query: 118 ADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVS 177
A + + +++ + A ++++ D ++GRS + +A++ LY ACR EG+PR+ +E+ AVS
Sbjct: 146 ASSLGIPRSVREVACVIYRRALDEDLIRGRSIEGVATSTLYAACRMEGIPRSLEEVAAVS 205
Query: 178 KISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDI 237
++ +KEIGR ++ + + L ++ + + RFCS L L VQ AT I E +
Sbjct: 206 RVERKEIGRTYRYVAQELSLEMEPVDPKQYTPRFCSELDLSEEVQAKATEIIDTTTEKGL 265
Query: 238 VPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
+ G+SP AAAAIY AS ++K++Q+EI ++A V EVTIR Y+
Sbjct: 266 LSGKSPTGYAAAAIYAASLLCNEKKTQREIAEVAQVTEVTIRNRYQ 311
>gi|257388719|ref|YP_003178492.1| transcription factor TFIIB cyclin-related protein [Halomicrobium
mukohataei DSM 12286]
gi|257171026|gb|ACV48785.1| Transcription factor TFIIB cyclin-related [Halomicrobium mukohataei
DSM 12286]
Length = 317
Score = 167 bits (424), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 97/272 (35%), Positives = 156/272 (57%), Gaps = 11/272 (4%)
Query: 22 AGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLSTMIGPGR 81
+G+ IC +CGLV+ D ID G EWR F N SRVG P ++ L+T I
Sbjct: 38 SGELICEDCGLVIEDENIDRGPEWRAF-NHSERQSKSRVGAPTTQTMHDKGLTTTIDWKD 96
Query: 82 GDASFDGFG---------MSKYQNR-RTMNSSDRALLNAIREINSMADRINLTKTIVDRA 131
DA + K+Q R RT ++ +R L A+ EI+ MA + + +++ + A
Sbjct: 97 KDAYGRSISSKKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDRMASALGVPRSVREVA 156
Query: 132 NNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGRCFKLI 191
+ ++++ D ++GRS + +A++CLY ACRQEG+PR+ +E+ VS++ +KEIGR ++ +
Sbjct: 157 SVIYRRALDEDLIRGRSIEGVATSCLYAACRQEGIPRSLEEVSDVSRVEQKEIGRTYRYV 216
Query: 192 LKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAI 251
+ L+ ++ + ++ RF S L L VQ A I E ++ G+SP AAAAI
Sbjct: 217 AQELKLKMEPVDPKQYVPRFASELELSEEVQSKANEIIDVTAEQGLLSGKSPTGYAAAAI 276
Query: 252 YMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
Y AS ++K++Q+E+ D+A V EVTIR Y+
Sbjct: 277 YAASLLCNEKKTQREVADVAQVTEVTIRNRYQ 308
>gi|294495329|ref|YP_003541822.1| transcription initiation factor IIB (TFIIB) [Methanohalophilus
mahii DSM 5219]
gi|292666328|gb|ADE36177.1| Transcription initiation factor IIB (TFIIB) [Methanohalophilus
mahii DSM 5219]
Length = 337
Score = 167 bits (424), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 112/288 (38%), Positives = 168/288 (58%), Gaps = 15/288 (5%)
Query: 8 CYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPL 67
C E L +DY + +C++CGLVV +D G EWR F +++ + SRVG P
Sbjct: 41 CPECGSRNLEQDYERAELVCADCGLVVDADFVDEGPEWRAFDHDQR-MKRSRVGAPMTYT 99
Query: 68 LNGSDLSTMIGPGRGDASFDG---------FGMSKYQNR-RTMNSSDRALLNAIREINSM 117
++ LSTMI D+ + + K+Q R R N+++R L A+ E++ M
Sbjct: 100 IHDKGLSTMIDWRNRDSYGKSISSKNRAQLYRLRKWQRRIRVSNATERNLAFALSELDRM 159
Query: 118 ADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVS 177
A + L +T+ + A ++++ D ++GRS + +A+A LY ACRQ VPRT EI VS
Sbjct: 160 ASALGLPRTVRETAAVVYRKAVDKNLIRGRSIEGVAAAALYAACRQCSVPRTLDEIGEVS 219
Query: 178 KISKKEIGRCFKLILKALETSVDLITTG--DFMSRFCSNLSLPNMVQKAATHIARKAVEL 235
++S+KEIGR ++ I + L S+ L+ T D++ RFCS L+L VQ I R+A E
Sbjct: 220 RVSRKEIGRTYRFISREL--SLKLMPTSPIDYVPRFCSGLTLKGEVQSRGVEILRQASEK 277
Query: 236 DIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
++ GR P VAAAAIY+AS ++R+Q+E+ D+AGV EVTIR YK
Sbjct: 278 ELTSGRGPTGVAAAAIYIASILCGERRTQREVADVAGVTEVTIRNRYK 325
Score = 45.8 bits (107), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 55/96 (57%), Gaps = 1/96 (1%)
Query: 208 MSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEI 267
+ R S L LP V++ A + RKAV+ +++ GRS VAAAA+Y A + S R+ EI
Sbjct: 156 LDRMASALGLPRTVRETAAVVYRKAVDKNLIRGRSIEGVAAAALYAACRQCSVPRTLDEI 215
Query: 268 GDIAGVAEVTIRQSYKLMYPHAS-KLFPQDFVFHTP 302
G+++ V+ I ++Y+ + S KL P + + P
Sbjct: 216 GEVSRVSRKEIGRTYRFISRELSLKLMPTSPIDYVP 251
>gi|341583086|ref|YP_004763578.1| transcription initiation factor IIB [Thermococcus sp. 4557]
gi|340810744|gb|AEK73901.1| transcription initiation factor IIB [Thermococcus sp. 4557]
Length = 299
Score = 167 bits (422), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 94/286 (32%), Positives = 159/286 (55%), Gaps = 7/286 (2%)
Query: 4 NKVCCYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGP 63
N+ C I D G+ IC CG V+ + V+D G EWR F + +RVG P
Sbjct: 3 NRRVCPVCGSTEFIYDPGRGEIICKVCGYVIEENVVDTGPEWRAFDASQRE-KRARVGAP 61
Query: 64 ENPLLNGSDLSTMIGPGR---GDASFDGFGMSKYQNR-RTMNSSDRALLNAIREINSMAD 119
E+ LL+ LST IG R G + + K+Q+R R ++++R L A+ E++ +A
Sbjct: 62 ESILLHDKGLSTDIGIDRNLSGLMREKMYRLRKWQSRLRVSDAAERNLAFALSELDRIAS 121
Query: 120 RINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKI 179
++ L + + + A L+++ ++GRS +++ +AC+Y +CR VPRT EI +S++
Sbjct: 122 QLKLPRHVEEEAARLYREAVRKGLIRGRSIESVIAACVYASCRLLKVPRTLDEIADISRV 181
Query: 180 SKKEIGRCFKLILKALETSVD--LITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDI 237
KKEIGR F+ I + L + + D++++F L + V++ A I +A + +
Sbjct: 182 DKKEIGRSFRFIARNLNLTPKKLFVKPTDYVNKFADELGMSERVRRRAIAILEEAYDRGL 241
Query: 238 VPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
G+SP + AAA+Y+A +KR+Q+E+ ++A V EVT+R YK
Sbjct: 242 TSGKSPAGLVAAALYIAGLLEDEKRTQREVAEVARVTEVTVRNRYK 287
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 52/97 (53%), Gaps = 6/97 (6%)
Query: 208 MSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEI 267
+ R S L LP V++ A + R+AV ++ GRS SV AA +Y + + R+ EI
Sbjct: 116 LDRIASQLKLPRHVEEEAARLYREAVRKGLIRGRSIESVIAACVYASCRLLKVPRTLDEI 175
Query: 268 GDIAGVAEVTIRQSYKLMYPHAS----KLF--PQDFV 298
DI+ V + I +S++ + + + KLF P D+V
Sbjct: 176 ADISRVDKKEIGRSFRFIARNLNLTPKKLFVKPTDYV 212
Score = 38.9 bits (89), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 20/86 (23%), Positives = 45/86 (52%)
Query: 114 INSMADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEI 173
+N AD + +++ + RA + ++ +D G+S + +A LYIA E RT +E+
Sbjct: 212 VNKFADELGMSERVRRRAIAILEEAYDRGLTSGKSPAGLVAAALYIAGLLEDEKRTQREV 271
Query: 174 CAVSKISKKEIGRCFKLILKALETSV 199
V+++++ + +K ++ L +
Sbjct: 272 AEVARVTEVTVRNRYKELVDKLNLKI 297
>gi|76803221|ref|YP_331316.1| transcription initiation factor TFB 8 [Natronomonas pharaonis DSM
2160]
gi|76559086|emb|CAI50684.1| transcription initiation factor TFB [Natronomonas pharaonis DSM
2160]
Length = 325
Score = 167 bits (422), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 100/286 (34%), Positives = 162/286 (56%), Gaps = 11/286 (3%)
Query: 8 CYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPL 67
C E +++D G+ +C++CGLVV + ID G EWR F N + SRVG P
Sbjct: 31 CPECSSTDIVKDGDRGELVCNDCGLVVEEDHIDPGPEWRAF-NHSERQEKSRVGAPTTQT 89
Query: 68 LNGSDLSTMIGPGRGDASFDGFG---------MSKYQNR-RTMNSSDRALLNAIREINSM 117
++ L+T I DA + K+Q R RT ++ +R L A+ EI+ M
Sbjct: 90 MHDKGLTTQIDWKDQDAYGRSISSEKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDRM 149
Query: 118 ADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVS 177
+ + + ++I + A+ ++++ D ++GRS + +A+A LY ACR+EG+PR+ +EI VS
Sbjct: 150 SSALGVPRSIREVASVIYRRALDDDLIRGRSIEGVATAALYAACRKEGIPRSLEEISEVS 209
Query: 178 KISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDI 237
++ +KEIGR ++ I + L ++ + ++ RFCS L L VQ A I E +
Sbjct: 210 RVERKEIGRTYRYISQELGLEMEPVDPQKYVPRFCSELELSEEVQSKAKDIIETTAEKGL 269
Query: 238 VPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
+ G+SP AAAAIY AS ++K++Q+E+ ++A V EVTIR Y+
Sbjct: 270 LSGKSPTGYAAAAIYAASLLCNEKKTQREVAEVAQVTEVTIRNRYQ 315
>gi|331746825|ref|YP_004422862.1| Transcription initiation factor B [Thermococcus barophilus MP]
gi|315185036|gb|ADT85220.1| Transcription initiation factor B [Thermococcus barophilus MP]
Length = 301
Score = 166 bits (421), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 90/276 (32%), Positives = 156/276 (56%), Gaps = 7/276 (2%)
Query: 14 APLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDL 73
+ LI DY G+ C+ CG +V ++D+ EWR F + SR G PE+ LL+ L
Sbjct: 16 SKLIYDYERGEIFCAVCGSIVTQDIVDLRQEWRAFDASQRE-KRSRTGAPESILLHDKGL 74
Query: 74 STMIGPGR---GDASFDGFGMSKYQNR-RTMNSSDRALLNAIREINSMADRINLTKTIVD 129
ST IG R G + + K+Q+R R ++++R L A+ E++ +A ++ L + + +
Sbjct: 75 STDIGSDRNITGLMREKMYRLRKWQSRLRVSDAAERNLAFALSELDRIASQLKLPRHVEE 134
Query: 130 RANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGRCFK 189
A L+++ ++GRS +++ +AC+Y ACR +PRT EI ++++ KKEI R F+
Sbjct: 135 EAARLYREAIRKGLIRGRSIESVIAACVYAACRLLKIPRTLDEIADIARVDKKEIARSFR 194
Query: 190 LILKALETSVD--LITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVA 247
I + L + + D++++F L L V++ A + +A + G+SP +
Sbjct: 195 FIARNLNLTPKKLFVKPTDYVNKFADELGLSEKVRRRAIELLEEAYNRGLTSGKSPAGLV 254
Query: 248 AAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
AAA+Y+AS +KR+Q+E+ ++A V EVT+R YK
Sbjct: 255 AAALYIASLLEGEKRTQREVAEVARVTEVTVRNRYK 290
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 52/97 (53%), Gaps = 6/97 (6%)
Query: 208 MSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEI 267
+ R S L LP V++ A + R+A+ ++ GRS SV AA +Y A + R+ EI
Sbjct: 119 LDRIASQLKLPRHVEEEAARLYREAIRKGLIRGRSIESVIAACVYAACRLLKIPRTLDEI 178
Query: 268 GDIAGVAEVTIRQSYKLMYPHAS----KLF--PQDFV 298
DIA V + I +S++ + + + KLF P D+V
Sbjct: 179 ADIARVDKKEIARSFRFIARNLNLTPKKLFVKPTDYV 215
Score = 44.7 bits (104), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 48/86 (55%)
Query: 114 INSMADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEI 173
+N AD + L++ + RA L ++ ++ G+S + +A LYIA EG RT +E+
Sbjct: 215 VNKFADELGLSEKVRRRAIELLEEAYNRGLTSGKSPAGLVAAALYIASLLEGEKRTQREV 274
Query: 174 CAVSKISKKEIGRCFKLILKALETSV 199
V+++++ + +K +++ L S+
Sbjct: 275 AEVARVTEVTVRNRYKELVEKLGLSI 300
>gi|448286652|ref|ZP_21477877.1| transcription initiation factor iib (tfiib) [Halogeometricum
borinquense DSM 11551]
gi|445574029|gb|ELY28538.1| transcription initiation factor iib (tfiib) [Halogeometricum
borinquense DSM 11551]
Length = 304
Score = 166 bits (421), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 101/290 (34%), Positives = 161/290 (55%), Gaps = 11/290 (3%)
Query: 4 NKVCCYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGP 63
++ C E +I D G+ +C +CGLV+ +R ID G EWR F N SRVG P
Sbjct: 7 ERIACPECESTNIITDADQGELVCDDCGLVLDERQIDRGPEWRAF-NHSERQSKSRVGAP 65
Query: 64 ENPLLNGSDLSTMIGPGRGDASFDGFG---------MSKYQNR-RTMNSSDRALLNAIRE 113
++ L+T I DA + K+Q R RT ++ +R L A+ E
Sbjct: 66 ITETMHDRGLTTTIDWKDKDAYGRSLSSEKRSQMHRLRKWQERIRTKDAGERNLQFALSE 125
Query: 114 INSMADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEI 173
I+ MA + + +++ + A+ ++++ + ++GRS + +A++ LY ACRQEG+PR+ E+
Sbjct: 126 IDRMASALGVPRSVREVASVIYRRALNEDLIRGRSIEGVATSALYAACRQEGIPRSLDEV 185
Query: 174 CAVSKISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAV 233
VS++ +KEIGR ++ I + L + + F+ RF S L L VQ AT I +
Sbjct: 186 AEVSRVPQKEIGRTYRYISQELGLELKPVDPKQFVPRFASALGLSEEVQAKATEIIDVSA 245
Query: 234 ELDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
E ++ G+SP AAAAIY AS ++K++Q+E+ D+A V EVTIR Y+
Sbjct: 246 EQGLLSGKSPTGFAAAAIYAASLLCNEKKTQREVADVAQVTEVTIRNRYQ 295
>gi|313126498|ref|YP_004036768.1| transcription initiation factor iib (tfiib) [Halogeometricum
borinquense DSM 11551]
gi|312292863|gb|ADQ67323.1| Transcription initiation factor IIB (TFIIB) [Halogeometricum
borinquense DSM 11551]
Length = 317
Score = 166 bits (421), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 101/290 (34%), Positives = 161/290 (55%), Gaps = 11/290 (3%)
Query: 4 NKVCCYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGP 63
++ C E +I D G+ +C +CGLV+ +R ID G EWR F N SRVG P
Sbjct: 20 ERIACPECESTNIITDADQGELVCDDCGLVLDERQIDRGPEWRAF-NHSERQSKSRVGAP 78
Query: 64 ENPLLNGSDLSTMIGPGRGDASFDGFG---------MSKYQNR-RTMNSSDRALLNAIRE 113
++ L+T I DA + K+Q R RT ++ +R L A+ E
Sbjct: 79 ITETMHDRGLTTTIDWKDKDAYGRSLSSEKRSQMHRLRKWQERIRTKDAGERNLQFALSE 138
Query: 114 INSMADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEI 173
I+ MA + + +++ + A+ ++++ + ++GRS + +A++ LY ACRQEG+PR+ E+
Sbjct: 139 IDRMASALGVPRSVREVASVIYRRALNEDLIRGRSIEGVATSALYAACRQEGIPRSLDEV 198
Query: 174 CAVSKISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAV 233
VS++ +KEIGR ++ I + L + + F+ RF S L L VQ AT I +
Sbjct: 199 AEVSRVPQKEIGRTYRYISQELGLELKPVDPKQFVPRFASALGLSEEVQAKATEIIDVSA 258
Query: 234 ELDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
E ++ G+SP AAAAIY AS ++K++Q+E+ D+A V EVTIR Y+
Sbjct: 259 EQGLLSGKSPTGFAAAAIYAASLLCNEKKTQREVADVAQVTEVTIRNRYQ 308
>gi|340344517|ref|ZP_08667649.1| Transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosoarchaeum koreensis MY1]
gi|339519658|gb|EGP93381.1| Transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosoarchaeum koreensis MY1]
Length = 302
Score = 166 bits (420), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 91/278 (32%), Positives = 154/278 (55%), Gaps = 12/278 (4%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLST 75
L+ D G+ C +CG V+ D+V + G EWR+FSNE G + SR G P + ++ L+T
Sbjct: 19 LVTDATTGENFCGKCGFVITDKVDESGPEWRSFSNE--GENKSRAGVPTSLAMHDMGLAT 76
Query: 76 MIGPGRGDAS---FDGFGMSKYQNRRTMNSS-------DRALLNAIREINSMADRINLTK 125
+I P DA+ S + RT +S DR A E++ + D++ +
Sbjct: 77 VINPQNRDATGKPLTSAMKSTIERLRTWDSRSQVHEPVDRNFRQAFSELDRLKDKLAVGD 136
Query: 126 TIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIG 185
++++A ++++ + ++GRS A+ ++ LY ACR PRT K+I S I +K+I
Sbjct: 137 AVIEKAAYIYRKALEKGLVRGRSISALIASALYAACRDTETPRTLKDIGHASNIKRKDIA 196
Query: 186 RCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPIS 245
RC++L+L+ L + ++ +SR S L ++AAT I + A E I G+ P+
Sbjct: 197 RCYRLLLRELNLKMPVVDPVKCISRIASKAGLSEKTKRAATKILQTAEEQKISAGKDPMG 256
Query: 246 VAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
+AAAA+Y+A + + ++Q+++ + AGV EVTIR YK
Sbjct: 257 LAAAALYVACVTNGENKTQRDVAEAAGVTEVTIRNRYK 294
Score = 43.5 bits (101), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 47/87 (54%)
Query: 208 MSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEI 267
+ R L++ + V + A +I RKA+E +V GRS ++ A+A+Y A + + R+ K+I
Sbjct: 125 LDRLKDKLAVGDAVIEKAAYIYRKALEKGLVRGRSISALIASALYAACRDTETPRTLKDI 184
Query: 268 GDIAGVAEVTIRQSYKLMYPHASKLFP 294
G + + I + Y+L+ + P
Sbjct: 185 GHASNIKRKDIARCYRLLLRELNLKMP 211
>gi|448420259|ref|ZP_21581021.1| transcription initiation factor iib (tfiib) [Halosarcina pallida
JCM 14848]
gi|445673877|gb|ELZ26432.1| transcription initiation factor iib (tfiib) [Halosarcina pallida
JCM 14848]
Length = 317
Score = 166 bits (419), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 101/290 (34%), Positives = 161/290 (55%), Gaps = 11/290 (3%)
Query: 4 NKVCCYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGP 63
++ C E +I D G+ +C +CGLV+ +R ID G EWR F N SRVG P
Sbjct: 20 ERIACPECESTNVITDADQGELVCDDCGLVLDERQIDRGPEWRAF-NHSERQSKSRVGAP 78
Query: 64 ENPLLNGSDLSTMIGPGRGDASFDGFG---------MSKYQNR-RTMNSSDRALLNAIRE 113
++ L+T I DA + K+Q R RT ++ +R L A+ E
Sbjct: 79 ITETMHDRGLTTTIDWKDKDAYGRSLSSEKRSQMHRLRKWQERIRTKDAGERNLQFALSE 138
Query: 114 INSMADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEI 173
I+ MA + + +++ + A+ ++++ + ++GRS + +A++ LY ACRQEG+PR+ E+
Sbjct: 139 IDRMASALGVPRSVREVASVIYRRALNEDLIRGRSIEGVATSALYAACRQEGIPRSLDEV 198
Query: 174 CAVSKISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAV 233
VS++ +KEIGR ++ I + L + + F+ RF S L L VQ AT I +
Sbjct: 199 AEVSRVPQKEIGRTYRYISQELGLELKPVDPKQFVPRFASALGLSEEVQAKATEIIDVSA 258
Query: 234 ELDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
E ++ G+SP AAAAIY AS ++K++Q+E+ D+A V EVTIR Y+
Sbjct: 259 EQGLLSGKSPTGFAAAAIYAASLLCNEKKTQREVADVAQVTEVTIRNRYQ 308
>gi|448730858|ref|ZP_21713162.1| transcription initiation factor TFB [Halococcus saccharolyticus DSM
5350]
gi|445793035|gb|EMA43630.1| transcription initiation factor TFB [Halococcus saccharolyticus DSM
5350]
Length = 334
Score = 166 bits (419), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 99/286 (34%), Positives = 159/286 (55%), Gaps = 11/286 (3%)
Query: 8 CYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPL 67
C E A I+ G+ +C +CGL++ D ID G EWR F N SRVG P
Sbjct: 41 CPECESASFIKSADQGELVCEDCGLILEDDNIDRGPEWRAF-NHAERQSKSRVGAPTTQT 99
Query: 68 LNGSDLSTMIGPGRGDASFDGFG---------MSKYQNR-RTMNSSDRALLNAIREINSM 117
++ L+T IG DAS + K+Q R RT ++ +R L A+ E + M
Sbjct: 100 MHDKGLTTNIGWQNKDASGRSLSAEKRTRMNRLRKWQERVRTKDAGERNLQFALSETDRM 159
Query: 118 ADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVS 177
A + + +++ + A+ ++++ ++GRS +A+A+ LY ACR+EG+PR+ +E+ V+
Sbjct: 160 ASALGVPRSVREVASVIYRRALSDDLIRGRSIEAVATGALYAACRKEGIPRSLEEVTHVA 219
Query: 178 KISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDI 237
++ +KEIGR ++ I + LE + ++ RFCS L L VQ A + +V +
Sbjct: 220 RVEQKEIGRTYRYIARELELGMRPTDPQKYVPRFCSALDLSEEVQSKANEVIEASVAEGL 279
Query: 238 VPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
+ G+SP AAAAIY AS ++K++Q+E+ D+A V EVTIR Y+
Sbjct: 280 LSGKSPTGYAAAAIYAASLLCNEKKTQREVADVAQVTEVTIRNRYQ 325
>gi|448316712|ref|ZP_21506293.1| transcription initiation factor IIB [Natronococcus jeotgali DSM
18795]
gi|445607127|gb|ELY61021.1| transcription initiation factor IIB [Natronococcus jeotgali DSM
18795]
Length = 318
Score = 166 bits (419), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 99/286 (34%), Positives = 158/286 (55%), Gaps = 11/286 (3%)
Query: 8 CYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPL 67
C E + L G+ +C ECGLV+ R ID G EWR F N SRVG P
Sbjct: 25 CDECGSSALTTSEDQGELVCEECGLVIETRNIDRGPEWRAF-NHSERNSKSRVGAPTTKT 83
Query: 68 LNGSDLSTMIGPGRGDASFDGFG---------MSKYQNR-RTMNSSDRALLNAIREINSM 117
++ L+T I DA + K+Q R RT ++ +R L A+ EI+ M
Sbjct: 84 MHDKGLTTQIDWKDKDAYGRSLSSEKRNQMHRLRKWQERIRTKDAGERNLQFALSEIDRM 143
Query: 118 ADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVS 177
A + + +++ + A+ ++++ + ++GRS + ++++CLY+ACRQE +PR+ +E+ VS
Sbjct: 144 ASALGVPRSVREVASVVYRRALNEDLIRGRSIEGVSTSCLYVACRQESIPRSLEEVADVS 203
Query: 178 KISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDI 237
++ KKEIGR ++ I + L + + +++ RFCS L VQ A I E +
Sbjct: 204 RVEKKEIGRTYRYIAQELSLEMKPVDPKEYVPRFCSALDSSEEVQAKAREIIDTTAEEGL 263
Query: 238 VPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
+ G+SP AAAAIY AS ++K++Q+E+ D+A V EVTIR Y+
Sbjct: 264 LSGKSPTGFAAAAIYAASLLCNEKKTQREVADVAQVTEVTIRNRYQ 309
>gi|386875527|ref|ZP_10117689.1| putative transcription initiation factor IIB [Candidatus
Nitrosopumilus salaria BD31]
gi|386806627|gb|EIJ66084.1| putative transcription initiation factor IIB [Candidatus
Nitrosopumilus salaria BD31]
Length = 302
Score = 166 bits (419), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 90/278 (32%), Positives = 154/278 (55%), Gaps = 12/278 (4%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLST 75
L+ D G+ C +CG V+ D+V + G EWR+FSNE G + SR G P + ++ L+T
Sbjct: 19 LVTDANTGENFCGKCGFVITDKVEESGPEWRSFSNE--GENKSRAGVPTSLAMHDMGLAT 76
Query: 76 MIGPGRGDAS---FDGFGMSKYQNRRTMNSS-------DRALLNAIREINSMADRINLTK 125
+I P DA+ S + RT +S DR A E++ + D++ +
Sbjct: 77 VINPQNRDATGKPLTAAMKSTIERLRTWDSRSQVHEPVDRNFRQAFSELDRLKDKLAVGD 136
Query: 126 TIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIG 185
+++++A ++++ + ++GRS A+ ++ LY ACR PRT K+I S I +K+I
Sbjct: 137 SVIEKAAYIYRKALEKGLVRGRSISALIASALYAACRDTETPRTLKDIGQASNIKRKDIA 196
Query: 186 RCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPIS 245
RC++L+L+ L + ++ +SR S L ++ AT I + A E I G+ P+
Sbjct: 197 RCYRLLLRELNLKMPVVDPVKCISRIASKAGLSEKTKRKATKILQTAEEQKISAGKDPMG 256
Query: 246 VAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
+AAAA+Y+A + + ++Q+++ + AGV EVTIR YK
Sbjct: 257 LAAAALYVACVTNGENKTQRDVAEAAGVTEVTIRNRYK 294
Score = 43.9 bits (102), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 47/87 (54%)
Query: 208 MSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEI 267
+ R L++ + V + A +I RKA+E +V GRS ++ A+A+Y A + + R+ K+I
Sbjct: 125 LDRLKDKLAVGDSVIEKAAYIYRKALEKGLVRGRSISALIASALYAACRDTETPRTLKDI 184
Query: 268 GDIAGVAEVTIRQSYKLMYPHASKLFP 294
G + + I + Y+L+ + P
Sbjct: 185 GQASNIKRKDIARCYRLLLRELNLKMP 211
>gi|162605828|ref|XP_001713429.1| transcription initiation factor IIB [Guillardia theta]
gi|13794361|gb|AAK39738.1|AF083031_95 transcription initiation factor IIB [Guillardia theta]
Length = 325
Score = 165 bits (418), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 107/302 (35%), Positives = 165/302 (54%), Gaps = 18/302 (5%)
Query: 8 CYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPL 67
C +EDY+ GD IC CG ++ +ID GSEWR FS++ +P R+G PENPL
Sbjct: 4 CINCGSKRFLEDYKQGDIICKNCGFIIESHIIDFGSEWRIFSDDNRSNNPVRIGLPENPL 63
Query: 68 LNGSDLSTMIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADRINLTKTI 127
L G+ ST+I G ++ + K QN+ S++ L + I+ + +K I
Sbjct: 64 L-GNSSSTLISKGLKGSNKINEKLLKAQNQNDNCKSEKYLASVFSIISFFLTNGSFSKLI 122
Query: 128 VDRANNLFKQVHDGKNLKG---------RSNDA--IASACLYIACRQEGVPRTFKEICAV 176
++ LFK +D LK R D I +A ++I C+ E +PR+FKEI +
Sbjct: 123 KEKVQELFKNYYDYLTLKSNGSRIKTTLRKKDTFSIIAASIFIICKNESIPRSFKEISEL 182
Query: 177 SKISKKEIGRCFKLILKALETSVDLITTGD---FMSRFCSNLSLPNMVQKAATHIARKAV 233
+K+ KK+IG +++ KALE + + D F+SRFCS L L + K A IA
Sbjct: 183 TKVKKKDIGNRVRIMEKALE-GIKISKKRDSDNFISRFCSKLGLSSTSSKIAEQIANFIK 241
Query: 234 ELDIVPGRSPISVAAAAIYMASQAS--SDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASK 291
+ + + GR+ ISVAAA+IY+ SQ S+ + K+I + GV+E+T+R +YK MYP+ +
Sbjct: 242 DKEGMYGRNYISVAAASIYVVSQIPNLSNNCNLKKIIEATGVSEITLRSAYKAMYPYRKE 301
Query: 292 LF 293
+
Sbjct: 302 IL 303
>gi|379335328|gb|AFD03312.1| transcription factor TFIIB cyclin-related protein [uncultured
archaeon W4-93a]
Length = 307
Score = 165 bits (418), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 91/274 (33%), Positives = 157/274 (57%), Gaps = 12/274 (4%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLST 75
++ D +G+ C+ CG V+ +++ D G+EWRTFSNE+S +RVG + ++ LST
Sbjct: 22 IVTDDTSGELFCAYCGFVINEKLEDTGAEWRTFSNEESS--RTRVGAGTSLTMHDMGLST 79
Query: 76 MIGPGRGDAS---FDGFGMSKYQNRRTMNS-------SDRALLNAIREINSMADRINLTK 125
+IG D++ G S + RT +S +DR L A+ E++ + D++ L
Sbjct: 80 IIGKANKDSTGKPLSGSMKSSIERLRTWDSRTQAHSSADRNLRQALNEMDKLKDKLALAD 139
Query: 126 TIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIG 185
+V++A ++++ + K ++GRS + +ACLY ACR PRT ++ I +K++
Sbjct: 140 VVVEKAAYIYRKAMEKKLVRGRSIHGLVAACLYAACRNTETPRTLDDMANGINIRRKDVA 199
Query: 186 RCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPIS 245
RC++LI + LE + ++ +SR S L ++ A I KA ++ +V G+ P+
Sbjct: 200 RCYRLIFRELELKMPVVDPVKGVSRIASIADLSEKSKRKAIIILNKAKDVGMVAGKDPMG 259
Query: 246 VAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIR 279
+AAAA+Y++ +S + +SQKEI +GV EVTIR
Sbjct: 260 IAAAALYLSCISSGESKSQKEISIASGVTEVTIR 293
Score = 39.3 bits (90), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 44/87 (50%)
Query: 208 MSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEI 267
M + L+L ++V + A +I RKA+E +V GRS + AA +Y A + + R+ ++
Sbjct: 128 MDKLKDKLALADVVVEKAAYIYRKAMEKKLVRGRSIHGLVAACLYAACRNTETPRTLDDM 187
Query: 268 GDIAGVAEVTIRQSYKLMYPHASKLFP 294
+ + + + Y+L++ P
Sbjct: 188 ANGINIRRKDVARCYRLIFRELELKMP 214
>gi|407464509|ref|YP_006775391.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus sp. AR2]
gi|407047697|gb|AFS82449.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus sp. AR2]
Length = 302
Score = 165 bits (418), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 90/278 (32%), Positives = 154/278 (55%), Gaps = 12/278 (4%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLST 75
L+ D G+ C +CG V+ D+V + G EWR+FSNE G + SR G P + ++ L+T
Sbjct: 19 LVTDANTGENFCGKCGFVITDKVEESGPEWRSFSNE--GENKSRAGVPTSLAMHDMGLAT 76
Query: 76 MIGPGRGDAS---FDGFGMSKYQNRRTMNSS-------DRALLNAIREINSMADRINLTK 125
+I P DA+ S + RT +S DR A E++ + D++ +
Sbjct: 77 VINPQNRDATGKPLTAAMKSTIERLRTWDSRSQVHEPVDRNFRQAFSELDRLKDKLAVGD 136
Query: 126 TIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIG 185
+++++A ++++ + ++GRS A+ ++ LY ACR PRT K+I S I +K+I
Sbjct: 137 SVIEKAAYIYRKALEKGLVRGRSISALIASALYAACRDTETPRTLKDIGQASNIKRKDIA 196
Query: 186 RCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPIS 245
RC++L+L+ L + ++ +SR S L ++ AT I + A E I G+ P+
Sbjct: 197 RCYRLLLRELNLKMPVVDPVKCISRIASKAGLSEKTKRKATKILQTAEEQKISAGKDPMG 256
Query: 246 VAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
+AAAA+Y+A + + ++Q+++ + AGV EVTIR YK
Sbjct: 257 LAAAALYVACVTNGENKTQRDVAEAAGVTEVTIRNRYK 294
Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 47/87 (54%)
Query: 208 MSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEI 267
+ R L++ + V + A +I RKA+E +V GRS ++ A+A+Y A + + R+ K+I
Sbjct: 125 LDRLKDKLAVGDSVIEKAAYIYRKALEKGLVRGRSISALIASALYAACRDTETPRTLKDI 184
Query: 268 GDIAGVAEVTIRQSYKLMYPHASKLFP 294
G + + I + Y+L+ + P
Sbjct: 185 GQASNIKRKDIARCYRLLLRELNLKMP 211
>gi|383619979|ref|ZP_09946385.1| transcription initiation factor TFB [Halobiforma lacisalsi AJ5]
gi|448696408|ref|ZP_21697882.1| transcription initiation factor TFB [Halobiforma lacisalsi AJ5]
gi|445783614|gb|EMA34442.1| transcription initiation factor TFB [Halobiforma lacisalsi AJ5]
Length = 321
Score = 165 bits (418), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 97/286 (33%), Positives = 160/286 (55%), Gaps = 11/286 (3%)
Query: 8 CYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPL 67
C E A L+ + + IC +CGL++ +R ID G EWR F N SRVG P
Sbjct: 28 CPECDSADLVTSNDSNEIICEDCGLIIEERNIDHGPEWRAF-NHSERQSKSRVGAPTTQT 86
Query: 68 LNGSDLSTMIGPGRGDASFDGFG---------MSKYQNR-RTMNSSDRALLNAIREINSM 117
++ L+T I DA + K+Q R RT ++ +R L A+ EI+ M
Sbjct: 87 MHDKGLTTQIDWKDKDAYGRSLSSEKRNQMNRLRKWQERIRTKDAGERNLQFALSEIDRM 146
Query: 118 ADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVS 177
A + + +++ + ++ ++++ ++GRS + +A++CLY CRQEG+PR+ +E+ VS
Sbjct: 147 ASALGVPRSVREVSSVIYRRALTEDLIRGRSIEGVATSCLYAGCRQEGIPRSLEEVAEVS 206
Query: 178 KISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDI 237
++ KKEIGR ++ + K L + + +++ RFCS+L V+ AT I E +
Sbjct: 207 RVEKKEIGRTYRYVAKELGLEMKPVDPKEYVPRFCSDLEASEEVEMKATEIIDTTAEQGL 266
Query: 238 VPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
+ G+SP AAAAIY AS ++K++Q+E+ ++A V EVTIR Y+
Sbjct: 267 LSGKSPTGFAAAAIYAASLLCNEKKTQREVAEVAQVTEVTIRNRYQ 312
>gi|448409173|ref|ZP_21574555.1| transcription initiation factor IIB [Halosimplex carlsbadense
2-9-1]
gi|445673121|gb|ELZ25683.1| transcription initiation factor IIB [Halosimplex carlsbadense
2-9-1]
Length = 313
Score = 165 bits (418), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 97/286 (33%), Positives = 159/286 (55%), Gaps = 11/286 (3%)
Query: 8 CYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPL 67
C E + L+ G+ +C +CGL++ + ID G EWR F N + SRVG P
Sbjct: 20 CPECESSALVTSADGGEIVCEDCGLIIDEGNIDRGPEWRAF-NHSERQEKSRVGAPTTQT 78
Query: 68 LNGSDLSTMIGPGRGDASFDGFG---------MSKYQNR-RTMNSSDRALLNAIREINSM 117
++ L+T I DA + K+Q R RT ++ +R L A+ EI+ M
Sbjct: 79 MHDKGLTTQIDWKDKDAYGRSLSSEKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDRM 138
Query: 118 ADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVS 177
A + + +++ + A+ ++++ D ++GRS + +A+ACLY ACRQE +PR+ +E+ VS
Sbjct: 139 ASALGVPRSVREVASVIYRRALDEDLIRGRSIEGVATACLYAACRQEDIPRSLEEVSEVS 198
Query: 178 KISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDI 237
++ +KEIGR ++ + + L ++ + ++ RF S L L VQ A I E +
Sbjct: 199 RVEQKEIGRTYRYVAQELSLKMEPVDPKQYVPRFVSELELSEEVQAKANEIIDVTAEKGL 258
Query: 238 VPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
+ G+SP AAAAIY AS ++K++Q+E+ D+A V EVTIR Y+
Sbjct: 259 LSGKSPTGYAAAAIYAASLLCNEKKTQREVADVAQVTEVTIRNRYQ 304
>gi|305663777|ref|YP_003860065.1| Transcription initiation factor IIB (TFIIB) [Ignisphaera aggregans
DSM 17230]
gi|304378346|gb|ADM28185.1| Transcription initiation factor IIB (TFIIB) [Ignisphaera aggregans
DSM 17230]
Length = 315
Score = 165 bits (418), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 94/282 (33%), Positives = 163/282 (57%), Gaps = 11/282 (3%)
Query: 12 PDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGS 71
P ++ D G+ IC++ G V+ + VID G EWR F+ E+ SR G P N L+ S
Sbjct: 18 PSGNIVYDEVRGEWICADSGEVIAEHVIDRGPEWRAFTAEERE-RRSRAGAPINIALHDS 76
Query: 72 DLSTMIGPGRGDAS---------FDGFGMSKYQNRRTMNSS-DRALLNAIREINSMADRI 121
LST+I D++ + + K+ +R + S+ DR ++ A+ E+ +AD++
Sbjct: 77 GLSTVIDWYDRDSAGRRLDLKRRLELIRIRKWHSRTRIQSTIDRNIVQAMNELERIADQL 136
Query: 122 NLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISK 181
NL + IV+ A ++++ + + ++GR+ +++ +A LY ACR G+PRT EI +K +
Sbjct: 137 NLPRVIVEEATMIYRRAVERELVRGRAIESMVAAALYAACRIHGIPRTLDEISKYTKSGR 196
Query: 182 KEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGR 241
KE+ RC++L+++ L + ++ ++ R S L L K A I R+A ++ + GR
Sbjct: 197 KEVARCYRLLVRELSLRIPIVDAAEYAQRIASMLGLSGATVKTAIDIIRRARDMGVTAGR 256
Query: 242 SPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
P +AAAA+Y+A+ + ++R+QKE+ AGV EVT+R YK
Sbjct: 257 DPAGIAAAAVYIAALLNDERRTQKEVASAAGVTEVTVRNRYK 298
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 53/102 (51%), Gaps = 2/102 (1%)
Query: 195 LETSVD--LITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIY 252
+++++D ++ + + R L+LP ++ + AT I R+AVE ++V GR+ S+ AAA+Y
Sbjct: 114 IQSTIDRNIVQAMNELERIADQLNLPRVIVEEATMIYRRAVERELVRGRAIESMVAAALY 173
Query: 253 MASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKLFP 294
A + R+ EI + + Y+L+ S P
Sbjct: 174 AACRIHGIPRTLDEISKYTKSGRKEVARCYRLLVRELSLRIP 215
>gi|110667821|ref|YP_657632.1| transcription initiation factor TFB [Haloquadratum walsbyi DSM
16790]
gi|385803264|ref|YP_005839664.1| transcription initiation factor TFB [Haloquadratum walsbyi C23]
gi|109625568|emb|CAJ51995.1| transcription initiation factor TFB [Haloquadratum walsbyi DSM
16790]
gi|339728756|emb|CCC39917.1| transcription initiation factor TFB [Haloquadratum walsbyi C23]
Length = 317
Score = 165 bits (418), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 99/290 (34%), Positives = 163/290 (56%), Gaps = 11/290 (3%)
Query: 4 NKVCCYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGP 63
++ C E ++ D G+ +C++CGLV+ +R ID G EWR F N SRVG P
Sbjct: 20 ERLTCPECESGDVVTDADQGELVCNDCGLVLDERQIDRGPEWRAF-NHSERQSKSRVGAP 78
Query: 64 ENPLLNGSDLSTMIGPGRGDASFDGFG---------MSKYQNR-RTMNSSDRALLNAIRE 113
++ L+T I DA + K+Q R RT ++ +R L A+ E
Sbjct: 79 ITETMHDRGLTTTIDWKDKDAYGRSLSSEKRSQMHRLRKWQERIRTKDAGERNLQFALSE 138
Query: 114 INSMADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEI 173
++ MA + + +++ + A+ ++++ + ++GRS + +A++ LY ACRQEG+PR+ E+
Sbjct: 139 VDRMASALGVPRSVREVASVIYRRALNEDLIRGRSIEGVATSALYAACRQEGIPRSLDEV 198
Query: 174 CAVSKISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAV 233
VS++ +KEIGR ++ I + L + + F+ RF S+L L VQ AT I +
Sbjct: 199 AEVSRVPQKEIGRTYRYISQELGLELRPVDPKQFVPRFSSSLHLSEEVQSKATEIIDVSA 258
Query: 234 ELDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
E ++ G+SP AAAAIY AS ++K++Q+E+ D+A V EVTIR Y+
Sbjct: 259 EQGLLSGKSPTGFAAAAIYAASLLCNEKKTQREVADVAQVTEVTIRNRYQ 308
>gi|337283539|ref|YP_004623013.1| putative transcription initiation factor IIB [Pyrococcus yayanosii
CH1]
gi|334899473|gb|AEH23741.1| putative transcription initiation factor IIB [Pyrococcus yayanosii
CH1]
Length = 322
Score = 165 bits (417), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 93/298 (31%), Positives = 164/298 (55%), Gaps = 7/298 (2%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLST 75
L+ D G+ C CG ++ + +ID+ ++R F + + SR+G PE+ LL+ LST
Sbjct: 19 LVYDPYRGEIYCQNCGEIIQENIIDLRPDYRIFDSNQWK-KRSRIGAPESILLHDKGLST 77
Query: 76 MIGPGR---GDASFDGFGMSKYQNR-RTMNSSDRALLNAIREINSMADRINLTKTIVDRA 131
IG R G + + ++Q+R R ++++R L A+ E++ + ++ L K + + A
Sbjct: 78 DIGIDRSLTGLMREKMYRLRRWQSRLRVSDAAERNLAFALSELDRITAQLKLPKHVEEEA 137
Query: 132 NNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGRCFKLI 191
L+++ ++GRS +++ +AC+Y ACR VPRT EI +S++ KKEIGR ++ I
Sbjct: 138 ARLYREAVRRGLIRGRSIESVIAACVYAACRLLKVPRTLDEISDISRVDKKEIGRSYRFI 197
Query: 192 LKALETSVD--LITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAA 249
+ L + + D++++F L L V++ A I +A + G+SP + AA
Sbjct: 198 ARNLNLTPKKLFVKPTDYVNKFADELGLSEKVRRKAVEILEEAYRKGLTSGKSPAGLVAA 257
Query: 250 AIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKLFPQDFVFHTPIHELP 307
A+Y+AS +KR+Q+E+ +IA V EVT+R YK + P F+ + E+P
Sbjct: 258 ALYIASLLEGEKRTQREVAEIARVTEVTVRNRYKELVEKLGLKLPSAFITNIAKAEVP 315
>gi|281209229|gb|EFA83402.1| transcription initiation factor IIB [Polysphondylium pallidum
PN500]
Length = 298
Score = 164 bits (416), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 102/292 (34%), Positives = 155/292 (53%), Gaps = 41/292 (14%)
Query: 7 CCYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENP 66
C E PD ++EDY GD IC +CG VV DR+ID G+++R F++ S D SRVG +P
Sbjct: 28 CKSETPD--IVEDYARGDLICRDCGYVVSDRIIDEGADFRNFAD--SLDDNSRVGYTADP 83
Query: 67 LLNGSDLSTMIG--PGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADRINLT 124
LL +DL+T I P +S G +++ Q++ + S++ L++ EI +AD
Sbjct: 84 LLRVADLTTTISYQPSTSSSSTTGSNLARQQSKINTSQSNKNLISGFSEIERIADHF--- 140
Query: 125 KTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEI 184
+A Y A RQ+G+ RT EI V ++SKK+I
Sbjct: 141 -----------------------------AAAFYYASRQQGMTRTIAEIINVIRVSKKDI 171
Query: 185 GRCFKLI---LKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGR 241
RC K++ L + E + +TT DF+SRFC+NL L + K +T I K EL ++ GR
Sbjct: 172 SRCMKIMKSRLPSDEMTTKSLTTDDFVSRFCNNLGLSKDIVKYSTFITNKLAELQVMDGR 231
Query: 242 SPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKLF 293
+P+S AAA+IY +++ K + K + DI+G+ VTI +Y+ M L
Sbjct: 232 NPLSCAAASIYFSTKLYGIKTTLKMVSDISGITSVTISNNYREMLKFKQSLL 283
>gi|399574686|ref|ZP_10768445.1| transcription initiation factor iib (tfiib) [Halogranum salarium
B-1]
gi|399240518|gb|EJN61443.1| transcription initiation factor iib (tfiib) [Halogranum salarium
B-1]
Length = 317
Score = 164 bits (415), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 101/288 (35%), Positives = 160/288 (55%), Gaps = 11/288 (3%)
Query: 6 VCCYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPEN 65
V C E +I D G+ +C++CGLV+ +R ID G EWR F N SRVG P
Sbjct: 22 VQCPECDSTDIITDADQGELVCNDCGLVIDERSIDRGPEWRAF-NHSERQSKSRVGAPIT 80
Query: 66 PLLNGSDLSTMIGPGRGDASFDGFG---------MSKYQNR-RTMNSSDRALLNAIREIN 115
++ L+T I DA + K+Q R RT ++ +R L A+ EI+
Sbjct: 81 ETMHDRGLTTTIDWKDKDAYGRSLSSEKRSQMHRLRKWQERIRTKDAGERNLQFALSEID 140
Query: 116 SMADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICA 175
MA + + +++ + A+ ++++ + ++GRS + +A++ LY ACRQEG+PR+ E+
Sbjct: 141 RMASALGVPRSVREVASVIYRRALNEDLIRGRSIEGVATSALYAACRQEGIPRSLDEVAE 200
Query: 176 VSKISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVEL 235
VS++ +KEIGR ++ I + L + + F+ RF S L L VQ A I + E
Sbjct: 201 VSRVPQKEIGRTYRYISQELGLELKPVDPKQFVPRFASALELSEEVQAKAVEIIDVSAEQ 260
Query: 236 DIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
++ G+SP AAAAIY AS ++K++Q+E+ D+A V EVTIR Y+
Sbjct: 261 GLLSGKSPTGFAAAAIYAASLLCNEKKTQREVADVAQVTEVTIRNRYQ 308
>gi|448609114|ref|ZP_21660393.1| transcription initiation factor TFB [Haloferax mucosum ATCC
BAA-1512]
gi|448615057|ref|ZP_21664085.1| transcription initiation factor TFB [Haloferax mediterranei ATCC
33500]
gi|445747491|gb|ELZ98947.1| transcription initiation factor TFB [Haloferax mucosum ATCC
BAA-1512]
gi|445753144|gb|EMA04563.1| transcription initiation factor TFB [Haloferax mediterranei ATCC
33500]
Length = 316
Score = 164 bits (415), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 101/290 (34%), Positives = 161/290 (55%), Gaps = 11/290 (3%)
Query: 4 NKVCCYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGP 63
+V C E ++ D G+ +C +CGLV+ +R ID G EWR F N SRVG P
Sbjct: 19 EQVNCPECGSDQIVTDADQGELVCDDCGLVLDERQIDRGPEWRAF-NHSERQSKSRVGAP 77
Query: 64 ENPLLNGSDLSTMIGPGRGDASFDGFG---------MSKYQNR-RTMNSSDRALLNAIRE 113
++ L+T I DA + K+Q R RT ++ +R L A+ E
Sbjct: 78 ITETMHDRGLTTTIDWKDKDAYGRSLSSEKRSQMHRLRKWQERIRTKDAGERNLQFALSE 137
Query: 114 INSMADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEI 173
I+ MA + + +++ + A+ ++++ + ++GRS + +A++ LY ACRQEG+PR+ E+
Sbjct: 138 IDRMASALGVPRSVREVASVIYRRALNEDLIRGRSIEGVATSALYAACRQEGIPRSLDEV 197
Query: 174 CAVSKISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAV 233
VS++ +KEIGR ++ I + L + + F+ RF S L L VQ AT I +
Sbjct: 198 AEVSRVPQKEIGRTYRYISQELGLELKPVDPKQFVPRFASALELSEEVQAKATEIIDVSA 257
Query: 234 ELDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
E ++ G+SP AAAAIY AS ++K++Q+E+ D+A V EVTIR Y+
Sbjct: 258 EQGLLSGKSPTGFAAAAIYAASLLCNEKKTQREVADVAQVTEVTIRNRYQ 307
>gi|379335167|gb|AFD03156.1| transcription factor TFIIB cyclin-related protein [uncultured
bacterium W5-77b]
Length = 303
Score = 164 bits (415), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 91/286 (31%), Positives = 157/286 (54%), Gaps = 11/286 (3%)
Query: 8 CYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPL 67
C A L+ D G+ C +CG VV ++V + G EWR+FS E+ SR G P +
Sbjct: 11 CPRCGKATLVTDANTGENFCGKCGFVVTEKVSESGPEWRSFSKEEHE-GRSRAGVPTSLA 69
Query: 68 LNGSDLSTMIGPGRGDAS---FDGFGMSKYQNRRTMNSS-------DRALLNAIREINSM 117
++ L+T+IGP DA+ S + RT +S DR A E++ +
Sbjct: 70 MHDMGLATIIGPADRDATGKPLSASMKSTIERLRTWDSRSQVHEPVDRNFRQAFSELDRL 129
Query: 118 ADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVS 177
D++ + T++++A ++++ + ++GRS A+ ++ LY ACR PRT K+I S
Sbjct: 130 KDKLAVGDTVIEKAAYIYRKALEKGLVRGRSISALIASALYAACRDTETPRTLKDIANAS 189
Query: 178 KISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDI 237
I +K+I RC++L+L+ L + ++ + +SR S L ++ A+ I + A E+ I
Sbjct: 190 NIKRKDIARCYRLLLRELGLKMPVVNPVNCISRIASIAGLSEKTKREASKILKNAEEVKI 249
Query: 238 VPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
G+ P+ +AAAA+Y+A + + ++Q+++ + AGV EVTIR YK
Sbjct: 250 SAGKDPMGLAAAALYVACVTNGENKTQRDVAEAAGVTEVTIRNRYK 295
Score = 42.0 bits (97), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 45/78 (57%)
Query: 208 MSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEI 267
+ R L++ + V + A +I RKA+E +V GRS ++ A+A+Y A + + R+ K+I
Sbjct: 126 LDRLKDKLAVGDTVIEKAAYIYRKALEKGLVRGRSISALIASALYAACRDTETPRTLKDI 185
Query: 268 GDIAGVAEVTIRQSYKLM 285
+ + + I + Y+L+
Sbjct: 186 ANASNIKRKDIARCYRLL 203
>gi|161528495|ref|YP_001582321.1| transcription factor TFIIB cyclin-related protein [Nitrosopumilus
maritimus SCM1]
gi|160339796|gb|ABX12883.1| Transcription factor TFIIB cyclin-related [Nitrosopumilus maritimus
SCM1]
Length = 315
Score = 164 bits (415), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 88/282 (31%), Positives = 157/282 (55%), Gaps = 12/282 (4%)
Query: 8 CYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPL 67
C D +I D G+ C +CG VV D++ D G+EWR+FSN++ + +R G +
Sbjct: 24 CPACGDKKMITDENTGELFCGKCGFVVSDKIADTGAEWRSFSNDEG--NKARTGAGTSLT 81
Query: 68 LNGSDLSTMIGPGRGDAS---FDGFGMSKYQNRRTMNS-------SDRALLNAIREINSM 117
++ LST+IG D++ S + RT +S +DR L A+ E++ +
Sbjct: 82 MHDMGLSTVIGAANKDSTGKPLSASVKSSIERLRTWDSRSQAHSSADRNLRQALNEMDKL 141
Query: 118 ADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVS 177
D++ LT ++++A ++++ + K ++GRS + +ACLY +CR PRT ++
Sbjct: 142 KDKLALTDAVIEKAAYIYRKAMEKKLVRGRSIQGLVAACLYASCRNTETPRTLDDVAKGI 201
Query: 178 KISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDI 237
I +K++ RC++LI + LE + ++ +SR S L ++ A I +A ++ +
Sbjct: 202 NIRRKDVARCYRLIFRELELKMPVVDPVKGVSRIASIAELSEKSKRKAIAILNEAKKMGV 261
Query: 238 VPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIR 279
V G+ P+ +AAAA+Y+A ++ + +SQK+I +GV EVTIR
Sbjct: 262 VAGKDPMGIAAAALYLACISTGEVKSQKDISIASGVTEVTIR 303
>gi|329765337|ref|ZP_08256917.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosoarchaeum limnia SFB1]
gi|329138243|gb|EGG42499.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosoarchaeum limnia SFB1]
Length = 303
Score = 164 bits (415), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 88/282 (31%), Positives = 158/282 (56%), Gaps = 12/282 (4%)
Query: 8 CYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPL 67
C D +I D G+ C CG V+ +++ D G+EWR+F+N+ + + +RVG +
Sbjct: 12 CPSCGDKKMITDETTGELFCGRCGFVMSEKISDTGAEWRSFANDDT--NRTRVGAGTSLT 69
Query: 68 LNGSDLSTMIGPGRGDAS---FDGFGMSKYQNRRTMNS-------SDRALLNAIREINSM 117
++ LST+IGP D++ S + RT +S +DR L A+ E++ +
Sbjct: 70 MHDMGLSTVIGPANKDSTGKPLTSSMKSSIERLRTWDSRSQAHSSADRNLRQALNEMDKL 129
Query: 118 ADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVS 177
D++ LT +V++A ++++ + K ++GRS + +ACLY +CR PRT ++
Sbjct: 130 KDKLALTDAVVEKAAYIYRKAMEKKLVRGRSIQGLVAACLYASCRNTETPRTLDDVAKGI 189
Query: 178 KISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDI 237
I +K++ RC++LI + LE + ++ +SR S L ++ A I +A ++ +
Sbjct: 190 NIRRKDVARCYRLIFRELELKMPVVDPVKGVSRIASIAELSEKSKRKAVAILEQAKKIGM 249
Query: 238 VPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIR 279
V G+ P+ +AAAA+Y+A ++ + +SQK+I +GV EVTIR
Sbjct: 250 VAGKDPMGIAAAALYLACISTGEIKSQKDISIASGVTEVTIR 291
>gi|448575781|ref|ZP_21642061.1| transcription initiation factor TFB [Haloferax larsenii JCM 13917]
gi|448591050|ref|ZP_21650815.1| transcription initiation factor TFB [Haloferax elongans ATCC
BAA-1513]
gi|445730722|gb|ELZ82310.1| transcription initiation factor TFB [Haloferax larsenii JCM 13917]
gi|445734546|gb|ELZ86105.1| transcription initiation factor TFB [Haloferax elongans ATCC
BAA-1513]
Length = 316
Score = 164 bits (415), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 100/290 (34%), Positives = 162/290 (55%), Gaps = 11/290 (3%)
Query: 4 NKVCCYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGP 63
++ C E ++ D G+ +C +CGLV+ +R ID G EWR F N SRVG P
Sbjct: 19 EQLSCPECGSDQVVTDADQGELVCDDCGLVLDERQIDRGPEWRAF-NHSERQSKSRVGAP 77
Query: 64 ENPLLNGSDLSTMIGPGRGDASFDGFG---------MSKYQNR-RTMNSSDRALLNAIRE 113
++ L+T I DA + K+Q R RT ++ +R L A+ E
Sbjct: 78 ITETMHDRGLTTTIDWKDKDAYGRSLSSEKRSQMHRLRKWQERIRTKDAGERNLQFALSE 137
Query: 114 INSMADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEI 173
I+ MA + + +++ + A+ ++++ + ++GRS + +A++ LY ACRQEG+PR+ E+
Sbjct: 138 IDRMASALGVPRSVREVASVIYRRALNEDLIRGRSIEGVATSALYAACRQEGIPRSLDEV 197
Query: 174 CAVSKISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAV 233
VS++ +KEIGR ++ I + L + + F+ RF S L+L VQ AT I +
Sbjct: 198 AEVSRVPQKEIGRTYRYISQELGLELKPVDPKQFVPRFASALNLSEEVQSKATEIIDVSA 257
Query: 234 ELDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
E ++ G+SP AAAAIY AS ++K++Q+E+ D+A V EVTIR Y+
Sbjct: 258 EQGLLSGKSPTGFAAAAIYAASLLCNEKKTQREVADVAQVTEVTIRNRYQ 307
>gi|407462627|ref|YP_006773944.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus koreensis AR1]
gi|407046249|gb|AFS81002.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus koreensis AR1]
Length = 303
Score = 164 bits (415), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 88/282 (31%), Positives = 157/282 (55%), Gaps = 12/282 (4%)
Query: 8 CYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPL 67
C D +I D G+ C +CG VV D++ D G+EWR+FSN++ + +R G +
Sbjct: 12 CPACGDKKMITDENTGELFCGKCGFVVSDKIADTGAEWRSFSNDEG--NKARTGAGTSLT 69
Query: 68 LNGSDLSTMIGPGRGDAS---FDGFGMSKYQNRRTMNS-------SDRALLNAIREINSM 117
++ LST+IG D++ S + RT +S +DR L A+ E++ +
Sbjct: 70 MHDMGLSTVIGAANKDSTGKPLSASVKSSIERLRTWDSRSQAHSSADRNLRQALNEMDKL 129
Query: 118 ADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVS 177
D++ LT ++++A ++++ + K ++GRS + +ACLY +CR PRT ++
Sbjct: 130 KDKLALTDAVIEKAAYIYRKAMEKKLVRGRSIQGLVAACLYASCRNTETPRTLDDVAKGI 189
Query: 178 KISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDI 237
I +K++ RC++LI + LE + ++ +SR S L ++ A I +A ++ +
Sbjct: 190 NIRRKDVARCYRLIFRELELKMPVVDPVKGVSRIASIAELSEKSKRKAIAILNEAKKMGV 249
Query: 238 VPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIR 279
V G+ P+ +AAAA+Y+A ++ + +SQK+I +GV EVTIR
Sbjct: 250 VAGKDPMGIAAAALYLACISTGEVKSQKDISIASGVTEVTIR 291
>gi|292655630|ref|YP_003535527.1| transcription initiation factor TFB [Haloferax volcanii DS2]
gi|448291763|ref|ZP_21482468.1| transcription initiation factor TFB [Haloferax volcanii DS2]
gi|448540907|ref|ZP_21623828.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-646]
gi|448549383|ref|ZP_21627988.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-645]
gi|448555504|ref|ZP_21631544.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-644]
gi|448571045|ref|ZP_21639556.1| transcription initiation factor TFB [Haloferax lucentense DSM
14919]
gi|448585553|ref|ZP_21647946.1| transcription initiation factor TFB [Haloferax gibbonsii ATCC
33959]
gi|448603114|ref|ZP_21656935.1| transcription initiation factor TFB [Haloferax sulfurifontis ATCC
BAA-897]
gi|448623724|ref|ZP_21670081.1| transcription initiation factor TFB [Haloferax denitrificans ATCC
35960]
gi|291370098|gb|ADE02325.1| transcription initiation factor TFB [Haloferax volcanii DS2]
gi|445573768|gb|ELY28284.1| transcription initiation factor TFB [Haloferax volcanii DS2]
gi|445709060|gb|ELZ60895.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-646]
gi|445712431|gb|ELZ64212.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-645]
gi|445718249|gb|ELZ69952.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-644]
gi|445722963|gb|ELZ74614.1| transcription initiation factor TFB [Haloferax lucentense DSM
14919]
gi|445726253|gb|ELZ77870.1| transcription initiation factor TFB [Haloferax gibbonsii ATCC
33959]
gi|445746310|gb|ELZ97772.1| transcription initiation factor TFB [Haloferax sulfurifontis ATCC
BAA-897]
gi|445752252|gb|EMA03679.1| transcription initiation factor TFB [Haloferax denitrificans ATCC
35960]
Length = 317
Score = 164 bits (415), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 101/290 (34%), Positives = 161/290 (55%), Gaps = 11/290 (3%)
Query: 4 NKVCCYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGP 63
+V C E ++ D G+ +C +CGLV+ +R ID G EWR F N SRVG P
Sbjct: 20 EQVNCPECGSDQIVTDADQGELVCDDCGLVLDERQIDRGPEWRAF-NHSERQSKSRVGAP 78
Query: 64 ENPLLNGSDLSTMIGPGRGDASFDGFG---------MSKYQNR-RTMNSSDRALLNAIRE 113
++ L+T I DA + K+Q R RT ++ +R L A+ E
Sbjct: 79 ITETMHDRGLTTTIDWKDKDAYGRSLSSEKRSQMHRLRKWQERIRTKDAGERNLQFALSE 138
Query: 114 INSMADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEI 173
I+ MA + + +++ + A+ ++++ + ++GRS + +A++ LY ACRQEG+PR+ E+
Sbjct: 139 IDRMASALGVPRSVREVASVIYRRALNEDLIRGRSIEGVATSALYAACRQEGIPRSLDEV 198
Query: 174 CAVSKISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAV 233
VS++ +KEIGR ++ I + L + + F+ RF S L L VQ AT I +
Sbjct: 199 AEVSRVPQKEIGRTYRYISQELGLELKPVDPKQFVPRFASALDLSEEVQAKATEIIDVSA 258
Query: 234 ELDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
E ++ G+SP AAAAIY AS ++K++Q+E+ D+A V EVTIR Y+
Sbjct: 259 EQGLLSGKSPTGFAAAAIYAASLLCNEKKTQREVADVAQVTEVTIRNRYQ 308
>gi|407462158|ref|YP_006773475.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus koreensis AR1]
gi|407045780|gb|AFS80533.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus koreensis AR1]
Length = 302
Score = 164 bits (414), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 90/278 (32%), Positives = 153/278 (55%), Gaps = 12/278 (4%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLST 75
L+ D G+ C +CG V+ D+V + G EWR+FSNE G + SR G P + ++ L+T
Sbjct: 19 LVTDANTGENFCGKCGFVITDKVEESGPEWRSFSNE--GENKSRAGVPTSLAMHDMGLAT 76
Query: 76 MIGPGRGDAS---FDGFGMSKYQNRRTMNSS-------DRALLNAIREINSMADRINLTK 125
+I P DA+ S + RT +S DR A E++ + D++ +
Sbjct: 77 VINPQNRDATGKPLTASMKSTIERLRTWDSRSQVHEPVDRNFRQAFSELDRLKDKLAVGD 136
Query: 126 TIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIG 185
++++A ++++ + ++GRS A+ ++ LY ACR PRT K+I S I +K+I
Sbjct: 137 AVIEKAAYIYRKALEKGLVRGRSISALIASALYAACRDTETPRTLKDIGQASNIKRKDIA 196
Query: 186 RCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPIS 245
RC++L+L+ L + ++ +SR S L ++ AT I + A E I G+ P+
Sbjct: 197 RCYRLLLRELNLKMPVVDPIKCISRIASKAGLSEKTKRKATKILQTAEENKISAGKDPMG 256
Query: 246 VAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
+AAAA+Y+A + + ++Q+++ + AGV EVTIR YK
Sbjct: 257 LAAAALYVACVTNGENKTQRDVAEAAGVTEVTIRNRYK 294
Score = 43.9 bits (102), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 47/87 (54%)
Query: 208 MSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEI 267
+ R L++ + V + A +I RKA+E +V GRS ++ A+A+Y A + + R+ K+I
Sbjct: 125 LDRLKDKLAVGDAVIEKAAYIYRKALEKGLVRGRSISALIASALYAACRDTETPRTLKDI 184
Query: 268 GDIAGVAEVTIRQSYKLMYPHASKLFP 294
G + + I + Y+L+ + P
Sbjct: 185 GQASNIKRKDIARCYRLLLRELNLKMP 211
>gi|326470967|gb|EGD94976.1| transcription initiation protein [Trichophyton tonsurans CBS
112818]
Length = 228
Score = 163 bits (413), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 88/187 (47%), Positives = 119/187 (63%), Gaps = 6/187 (3%)
Query: 8 CYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNE-KSGVDPSRVGGPENP 66
C E+P + E + + IC CGLV+ DR ID SEWRTFSN+ ++ DPSRVG NP
Sbjct: 30 CKENPPNLVPESH---ETICGSCGLVLADREIDPHSEWRTFSNDDQNNDDPSRVGDASNP 86
Query: 67 LLNGSDLSTMIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADRINLTKT 126
LLNG+ L T I G G A + + Q++ + ++++ALL A +EI S+ D N+ K
Sbjct: 87 LLNGNQLETQISFGTGGAR--SRELHRAQSKMSTENTNKALLAAYKEIGSLCDGFNIQKN 144
Query: 127 IVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGR 186
+ D A LFK V D K KG+S D I + C++IACRQ VPRTF EI AV+++SKKEIGR
Sbjct: 145 VADTAKYLFKIVDDAKAFKGKSQDVIIAGCIFIACRQCKVPRTFTEIFAVTRVSKKEIGR 204
Query: 187 CFKLILK 193
+K + K
Sbjct: 205 IYKALEK 211
>gi|393796911|ref|ZP_10380275.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosoarchaeum limnia BG20]
Length = 303
Score = 163 bits (413), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 88/282 (31%), Positives = 158/282 (56%), Gaps = 12/282 (4%)
Query: 8 CYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPL 67
C D +I D G+ C CG V+ +++ D G+EWR+F+N+ + + +RVG +
Sbjct: 12 CPSCGDKKMITDETTGELFCGRCGFVMSEKISDTGAEWRSFANDDT--NRTRVGAGTSLT 69
Query: 68 LNGSDLSTMIGPGRGDAS---FDGFGMSKYQNRRTMNS-------SDRALLNAIREINSM 117
++ LST+IGP D++ S + RT +S +DR L A+ E++ +
Sbjct: 70 MHDMGLSTVIGPANKDSTGKPLTSSMKSSIERLRTWDSRSQAHSSADRNLRQALNEMDKL 129
Query: 118 ADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVS 177
D++ LT +V++A ++++ + K ++GRS + +ACLY +CR PRT ++
Sbjct: 130 KDKLALTDAVVEKAAYIYRKAMEKKLVRGRSIQGLVAACLYASCRNTETPRTLDDVAKGI 189
Query: 178 KISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDI 237
I +K++ RC++LI + LE + ++ +SR S L ++ A I +A ++ +
Sbjct: 190 NIRRKDVARCYRLIFRELELKMPVVDPVKGVSRIASIAELSEKSKRKAVVILEQAKKIGM 249
Query: 238 VPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIR 279
V G+ P+ +AAAA+Y+A ++ + +SQK+I +GV EVTIR
Sbjct: 250 VAGKDPMGIAAAALYLACISTGEIKSQKDISIASGVTEVTIR 291
>gi|432328340|ref|YP_007246484.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Aciduliprofundum sp. MAR08-339]
gi|432135049|gb|AGB04318.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Aciduliprofundum sp. MAR08-339]
Length = 313
Score = 163 bits (413), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 100/288 (34%), Positives = 163/288 (56%), Gaps = 15/288 (5%)
Query: 8 CYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPL 67
C E LI DY G+ +C +CG V+ D ID G EWR F E+ +R G P L
Sbjct: 17 CPECGSTHLIWDYERGELVCGDCGAVIEDSFIDQGPEWRAFDAEQDE-KRARTGAPLTFL 75
Query: 68 LNGSDLSTMIG-----------PGRGDASFDGFGMSKYQNR-RTMNSSDRALLNAIREIN 115
+ L+T I P + A + + K+ R R N+++R L A++E+N
Sbjct: 76 SHDKGLATEISWSNKDSYGKRIPHKNRAQI--YRVRKWHQRIRVSNAAERNLSVALQELN 133
Query: 116 SMADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICA 175
+++ ++ L K + + A ++++ + ++GRS ++I +A +Y ACR+ G+PRT E+
Sbjct: 134 NVSSKMGLPKDVRETAAIIYRKAVEKNLIRGRSIESIVAASIYAACRKVGMPRTLDEVAK 193
Query: 176 VSKISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVEL 235
S+++KK+IGR ++ + K L ++ T ++++FCS L L V A I +KA ++
Sbjct: 194 ASELNKKKIGRAYRHLTKELNLNLKPTTANSYITQFCSKLRLDKNVVNKAEEIVQKATDV 253
Query: 236 DIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
I G+ P VAAAAIY+A+ ++ R+QKEI ++AGV EVTIR YK
Sbjct: 254 GITSGKGPTGVAAAAIYIAANMLNEPRTQKEIAEVAGVTEVTIRNRYK 301
>gi|399578753|ref|ZP_10772498.1| Transcription initiation factor IIB [Halogranum salarium B-1]
gi|399236212|gb|EJN57151.1| Transcription initiation factor IIB [Halogranum salarium B-1]
Length = 327
Score = 163 bits (413), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 99/291 (34%), Positives = 163/291 (56%), Gaps = 12/291 (4%)
Query: 3 INKVCCYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGG 62
+N C H A L+ G+ +C +CGLVV D V+D G EWR F + + SRVG
Sbjct: 22 VNNQCPECHSTA-LVRSTDRGELVCDDCGLVVDDNVVDHGPEWRAFDHSERQ-SKSRVGA 79
Query: 63 PENPLLNGSDLSTMIGPGRGDASFDGFG---------MSKYQNR-RTMNSSDRALLNAIR 112
P ++ L+T I D++ + K+Q R RT ++ +R L A+
Sbjct: 80 PVTQTMHDKGLTTTIDWKNQDSAGHLLSSEKRNQMHRLRKWQERIRTKDAGERNLQFALS 139
Query: 113 EINSMADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKE 172
EI+ MA + + +++ + A ++++ D ++GRS + +A++ LYIACRQEG+PR+ +E
Sbjct: 140 EIDRMASALGVPRSVREVAAVIYRRALDTDLIRGRSIEGVATSALYIACRQEGIPRSLEE 199
Query: 173 ICAVSKISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKA 232
+ +V+++ ++EIGR ++ I L + + ++ RFCS L L VQ+ AT I +
Sbjct: 200 VSSVARVDRREIGRTYRYIAHELGLPMSPVDPKQYLPRFCSELELSEDVQQRATTIIERT 259
Query: 233 VELDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
+ G+SP AAAAIY A+ ++KR+Q++I +A V EVTIR Y+
Sbjct: 260 TAEGLHSGKSPTGFAAAAIYTAALLCNEKRTQRDIAKVAQVTEVTIRNRYR 310
>gi|300712183|ref|YP_003737997.1| transcription initiation factor TFB [Halalkalicoccus jeotgali B3]
gi|448295872|ref|ZP_21485935.1| transcription initiation factor TFB [Halalkalicoccus jeotgali B3]
gi|299125866|gb|ADJ16205.1| transcription initiation factor TFB [Halalkalicoccus jeotgali B3]
gi|445583301|gb|ELY37633.1| transcription initiation factor TFB [Halalkalicoccus jeotgali B3]
Length = 323
Score = 163 bits (412), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 101/286 (35%), Positives = 158/286 (55%), Gaps = 11/286 (3%)
Query: 8 CYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPL 67
C E L++ G+ IC +CGLVV + ID G EWR F N + SRVG P
Sbjct: 29 CPECASDNLVKSSDRGELICDDCGLVVEEGNIDPGPEWRAF-NHQERQSKSRVGAPTTQT 87
Query: 68 LNGSDLSTMIGPGRGDASFDGFG---------MSKYQNR-RTMNSSDRALLNAIREINSM 117
++ L+T I DA + K+Q R RT ++ +R L A+ EI+ M
Sbjct: 88 MHDKGLTTTIDWKDKDAYGRSISSKKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDRM 147
Query: 118 ADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVS 177
A + + +++ + A+ ++++ ++GRS + +A+A LY ACR+EG+PR+ +EI VS
Sbjct: 148 ASALGVPRSVREVASVIYRRALKEDLIRGRSIEGVATAALYAACRKEGIPRSLEEISEVS 207
Query: 178 KISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDI 237
++ +KEIGR ++ I + L + + ++ RFCS L L VQ A I E +
Sbjct: 208 RVERKEIGRTYRYISQELGLEMRPVDPKKYVPRFCSELELSEEVQSKANEIIETTAEEGL 267
Query: 238 VPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
+ G+SP AAAAIY AS ++K++Q+E+ D+A V EVTIR Y+
Sbjct: 268 LSGKSPTGYAAAAIYAASLLCNEKKTQREVADVAQVTEVTIRNRYQ 313
>gi|329764659|ref|ZP_08256266.1| Transcription initiation factor TFIIIB, Brf1 subunit/Transcription
initiation factor TFIIB [Candidatus Nitrosoarchaeum
limnia SFB1]
gi|329138857|gb|EGG43086.1| Transcription initiation factor TFIIIB, Brf1 subunit/Transcription
initiation factor TFIIB [Candidatus Nitrosoarchaeum
limnia SFB1]
Length = 287
Score = 163 bits (412), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 86/278 (30%), Positives = 156/278 (56%), Gaps = 11/278 (3%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLST 75
++ D G++ C +CG V+ + + D G EWR+FS E G+DP+R G P + ++ L+T
Sbjct: 1 MLTDNDTGERFCGKCGFVISETLQDSGPEWRSFSKE-GGLDPTRTGAPTSLAIHDRGLAT 59
Query: 76 MIGPGRGDAS---FDGFGMSKYQNRRTMNS-------SDRALLNAIREINSMADRINLTK 125
+I P D+S S + RT +S SDR L A+ E+ + D++ ++
Sbjct: 60 IINPINRDSSGKPLTSSMKSTIERLRTWDSRSKVHASSDRNLRQALSELTRLKDKLAVSD 119
Query: 126 TIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIG 185
+V++A ++++ D ++GRS A+ ++ LY ACR PRT K++ I KK+I
Sbjct: 120 AVVEKAAYIYRKALDKGLVRGRSISALIASALYAACRDTETPRTLKDVSDAGNIKKKDIA 179
Query: 186 RCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPIS 245
RC++++ + LE + ++ ++R S L + ++ A + + A E + G+ P+
Sbjct: 180 RCYRILHQELELKMPVVDPIQCIARIASKLGISEKTKRYAVKVLKTAQEHEESAGKDPMG 239
Query: 246 VAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
+AAAA+Y++ ++S+ +Q++I + A V EVTIR YK
Sbjct: 240 LAAAALYLSCVSNSENMTQRDIAEAASVTEVTIRNRYK 277
Score = 43.1 bits (100), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 48/87 (55%)
Query: 208 MSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEI 267
++R L++ + V + A +I RKA++ +V GRS ++ A+A+Y A + + R+ K++
Sbjct: 108 LTRLKDKLAVSDAVVEKAAYIYRKALDKGLVRGRSISALIASALYAACRDTETPRTLKDV 167
Query: 268 GDIAGVAEVTIRQSYKLMYPHASKLFP 294
D + + I + Y++++ P
Sbjct: 168 SDAGNIKKKDIARCYRILHQELELKMP 194
>gi|399578260|ref|ZP_10772009.1| transcription initiation factor IIB [Halogranum salarium B-1]
gi|399236752|gb|EJN57687.1| transcription initiation factor IIB [Halogranum salarium B-1]
Length = 389
Score = 162 bits (411), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 97/287 (33%), Positives = 160/287 (55%), Gaps = 15/287 (5%)
Query: 8 CYEHPDAPLIEDYRAGDQI-CSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENP 66
C E +++D GD++ C +CGLV+ ++ ID G EWR F N SRVG P
Sbjct: 98 CPECESEAIVQD---GDELLCEDCGLVLDEQTIDRGPEWRAF-NASERDSKSRVGAPTTQ 153
Query: 67 LLNGSDLSTMIGPGRGDASFDGFGMSK---------YQNR-RTMNSSDRALLNAIREINS 116
++ L+T I DA + K +Q R RT ++ +R L A+ E++
Sbjct: 154 TMHDKGLTTQIDWKNKDAYGNSLSSRKREQMSRLRTWQERVRTKDAGERNLQFALSEMDR 213
Query: 117 MADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAV 176
MA + + K+ + A+ ++++ + ++GRS + +A+ CLY ACRQEG+PR+ E+ V
Sbjct: 214 MASALGVPKSTREVASVIYRRALNEDLIRGRSIEGVATGCLYAACRQEGIPRSLDEVADV 273
Query: 177 SKISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELD 236
S++ +EIGR ++ + K L + + +++ RF S L +P V++ A + A E
Sbjct: 274 SRVPYQEIGRTYRYVAKELSLEMRPVDPKEYVPRFASELGVPEEVEQKANDVIDTAAEEG 333
Query: 237 IVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
++ G+SP AAAA+Y A ++KR+QKE+ D+A V EVTIR Y+
Sbjct: 334 LLSGKSPTGFAAAALYAAGLLCNEKRTQKEVADVAQVTEVTIRNRYQ 380
>gi|302830488|ref|XP_002946810.1| hypothetical protein VOLCADRAFT_79408 [Volvox carteri f.
nagariensis]
gi|300267854|gb|EFJ52036.1| hypothetical protein VOLCADRAFT_79408 [Volvox carteri f.
nagariensis]
Length = 303
Score = 162 bits (411), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 118/308 (38%), Positives = 167/308 (54%), Gaps = 63/308 (20%)
Query: 30 CGLVVGDRVIDVGSEWRTFSN-EKSGVDPSRVGGPENPLLNGSDLSTMIGPGRGDASFDG 88
CG V R+ID SEWRTFS+ +K DP+RVGGP N LL G L+T IG R D
Sbjct: 5 CGTVKESRLIDERSEWRTFSDKDKDTTDPNRVGGPTNHLLEG--LTTTIGRERNDG---- 58
Query: 89 FGMSKYQNR---RTMNSSDRALLNAIREINSMADRINLTKTIVDRANNLFKQVHDGKNLK 145
G+S NR RT N+ DR ++ A++E+ M + + + T+ DRA ++K+V + K LK
Sbjct: 59 -GLSYTLNRIHART-NNPDRVIMAAMKEVGRMCELLKVNGTVKDRALEIYKEVVEAKTLK 116
Query: 146 GRSNDAIASACLYIACRQEGVPRTFKEICAV--SKISKKEIGRCFKLI--LKALE----- 196
GRS A+A++CL+ ACRQE RTFK+I AV + +SKKEIGRCFK + LK E
Sbjct: 117 GRSVKALAASCLFWACRQEKQARTFKQIVAVLGNDVSKKEIGRCFKDLQQLKKDELHKQG 176
Query: 197 TSVDLITT---------GDFMSRFCSNLSLPNMVQKAATHIARKAVELD-IVP--GRSPI 244
S D + + +F+ +C++L L +K A IA+ A D VP GR+P
Sbjct: 177 ASADALASTMNQTVQHPAEFVRNYCNHLRLEFKCKKLAEEIAQNAKPQDRRVPWDGRTPT 236
Query: 245 SVAAAAIYM-----------------------------ASQASSDKRSQKEIGDIAGVAE 275
S+A+A +++ A++A +D QK + I+ VAE
Sbjct: 237 SIASAIVFIAMMLWEIKKEEGQAGAGGSAGQPAFASLKAAKARADSAMQK-VAIISSVAE 295
Query: 276 VTIRQSYK 283
TIR +YK
Sbjct: 296 ATIRAAYK 303
>gi|254166565|ref|ZP_04873419.1| TFIIB zinc-binding family [Aciduliprofundum boonei T469]
gi|254167488|ref|ZP_04874340.1| TFIIB zinc-binding family [Aciduliprofundum boonei T469]
gi|289596282|ref|YP_003482978.1| Zinc finger TFIIB-type domain protein [Aciduliprofundum boonei
T469]
gi|197623751|gb|EDY36314.1| TFIIB zinc-binding family [Aciduliprofundum boonei T469]
gi|197624175|gb|EDY36736.1| TFIIB zinc-binding family [Aciduliprofundum boonei T469]
gi|289534069|gb|ADD08416.1| Zinc finger TFIIB-type domain protein [Aciduliprofundum boonei
T469]
Length = 313
Score = 162 bits (411), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 100/288 (34%), Positives = 162/288 (56%), Gaps = 15/288 (5%)
Query: 8 CYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPL 67
C E LI DY G+ +C +CG V+ D ID G EWR F E+ +R G P L
Sbjct: 17 CPECGSTHLIWDYERGELVCGDCGAVIEDSFIDQGPEWRAFDAEQDE-KRARTGAPLTFL 75
Query: 68 LNGSDLSTMIG-----------PGRGDASFDGFGMSKYQNR-RTMNSSDRALLNAIREIN 115
+ L+T I P + A + + K+ R R N+++R L A++E+N
Sbjct: 76 SHDKGLATEISWSNKDSYGKRIPHKNRAQI--YRVRKWHQRIRVSNAAERNLSVALQELN 133
Query: 116 SMADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICA 175
+++ ++ L K + + A ++++ + ++GRS ++I +A +Y ACR+ G+PRT E+
Sbjct: 134 NVSSKMGLPKDVRETAAIIYRKAVEKNLIRGRSIESIVAASIYAACRKVGMPRTLDEVAK 193
Query: 176 VSKISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVEL 235
S+++KK+IGR ++ + K L ++ T ++++FCS L L V A I ++A E
Sbjct: 194 ASELNKKKIGRAYRHLTKELNLNLKPTTATSYITQFCSKLHLDKNVVNKAEEIVQQATER 253
Query: 236 DIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
I G+ P VAAAAIY+A+ ++ R+QKEI ++AGV EVTIR YK
Sbjct: 254 GITSGKGPTGVAAAAIYIAANMMNEPRTQKEIAEVAGVTEVTIRNRYK 301
>gi|345005737|ref|YP_004808590.1| transcription initiation factor IIB [halophilic archaeon DL31]
gi|344321363|gb|AEN06217.1| Transcription initiation factor IIB [halophilic archaeon DL31]
Length = 318
Score = 162 bits (411), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 99/288 (34%), Positives = 160/288 (55%), Gaps = 11/288 (3%)
Query: 6 VCCYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPEN 65
+ C E +I D G+ +C +CGLV+ +R ID G EWR F N SRVG P
Sbjct: 23 LSCPECSSEEVITDDDQGELVCDDCGLVLDERQIDRGPEWRAF-NHSERQSKSRVGAPIT 81
Query: 66 PLLNGSDLSTMIGPGRGDASFDGFG---------MSKYQNR-RTMNSSDRALLNAIREIN 115
++ L+T I DA + K+Q R RT ++ +R L A+ E++
Sbjct: 82 ETMHDRGLTTTIDWKDKDAYGRSLSSEKRSQMHRLRKWQERIRTKDAGERNLQFALSEVD 141
Query: 116 SMADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICA 175
MA + + +++ + A+ ++++ + ++GRS + +++A LY ACRQEG+PR+ E+
Sbjct: 142 RMASALGVPRSVREVASVIYRRALNEDLIRGRSIEGVSTAALYAACRQEGIPRSLDEVAE 201
Query: 176 VSKISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVEL 235
VS++ +KEIGR ++ I + L + + F+ RF S L L VQ AT I + E
Sbjct: 202 VSRVPQKEIGRTYRYISQELGLELKPVDPKQFVPRFASELGLSEEVQSKATEIIDVSAEQ 261
Query: 236 DIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
++ G+SP AAAAIY AS ++K++Q+E+ ++A V EVTIR Y+
Sbjct: 262 GLLSGKSPTGFAAAAIYAASLLCNEKKTQREVAEVAQVTEVTIRNRYQ 309
>gi|340345049|ref|ZP_08668181.1| Transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosoarchaeum koreensis MY1]
gi|339520190|gb|EGP93913.1| Transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosoarchaeum koreensis MY1]
Length = 303
Score = 162 bits (411), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 89/282 (31%), Positives = 154/282 (54%), Gaps = 12/282 (4%)
Query: 8 CYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPL 67
C D ++ D G+ C CG VV D++ D G+EWR+F+N+ + +R G +
Sbjct: 12 CPSCGDRKMVTDETTGELFCGRCGFVVTDKISDTGAEWRSFANDDT--SRARTGAGTSLT 69
Query: 68 LNGSDLSTMIGPGRGDAS---FDGFGMSKYQNRRTMNS-------SDRALLNAIREINSM 117
++ LST+IG D++ S + RT +S +DR L A+ E+ +
Sbjct: 70 MHDMGLSTVIGAANKDSTGKPLTSSMKSSIERLRTWDSRSQAHSSADRNLRQALNEMGKL 129
Query: 118 ADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVS 177
D++ LT +V++A ++++ + K ++GRS + +ACLY ACR PRT ++
Sbjct: 130 KDKLALTDAVVEKAAYIYRKAMEKKLVRGRSIQGLVAACLYAACRNTETPRTLDDVANGI 189
Query: 178 KISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDI 237
I +K++ RC++LI + LE + ++ +SR S L ++ A I +A E+ +
Sbjct: 190 NIRRKDVARCYRLIFRELELKMPVVDPVKGVSRIASIAELSEKSKRKAVEILEQAKEIGM 249
Query: 238 VPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIR 279
V G+ P+ +AAAA+Y+A ++ + +SQK+I +GV EVTIR
Sbjct: 250 VAGKDPMGIAAAALYLACISTGEVKSQKDISIASGVTEVTIR 291
Score = 38.9 bits (89), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 43/87 (49%)
Query: 208 MSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEI 267
M + L+L + V + A +I RKA+E +V GRS + AA +Y A + + R+ ++
Sbjct: 126 MGKLKDKLALTDAVVEKAAYIYRKAMEKKLVRGRSIQGLVAACLYAACRNTETPRTLDDV 185
Query: 268 GDIAGVAEVTIRQSYKLMYPHASKLFP 294
+ + + + Y+L++ P
Sbjct: 186 ANGINIRRKDVARCYRLIFRELELKMP 212
>gi|15789908|ref|NP_279732.1| transcription initiation factor IIB [Halobacterium sp. NRC-1]
gi|169235629|ref|YP_001688829.1| transcription initiation factor TFB [Halobacterium salinarum R1]
gi|14195246|sp|Q9HRE6.1|TF2B2_HALSA RecName: Full=Transcription initiation factor IIB 2; Short=TFIIB 2
gi|10580312|gb|AAG19212.1| transcription initiation factor IIB [Halobacterium sp. NRC-1]
gi|167726695|emb|CAP13481.1| transcription initiation factor TFB [Halobacterium salinarum R1]
Length = 325
Score = 162 bits (411), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 96/281 (34%), Positives = 153/281 (54%), Gaps = 13/281 (4%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTF-SNEKSGVDPSRVGGPENPLLNGSDLS 74
+I+D G+ +C +CGLVV + ID G EWR F S EK + SRVG P +++ LS
Sbjct: 39 VIDDEEHGESVCVDCGLVVEENGIDRGPEWRAFNSTEKD--EKSRVGAPTTNMMHDKGLS 96
Query: 75 TMIGPGRGDASFDGFG---------MSKYQNR-RTMNSSDRALLNAIREINSMADRINLT 124
T IG DA + + K+ R RT NS +R L A+ EI MA + L
Sbjct: 97 TNIGWQDKDAYGNSLSSNQRQKMQRLRKWNERFRTRNSKERNLKQALGEIERMASALGLP 156
Query: 125 KTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEI 184
K + + A+ ++++ L GRS + +A+A LY + RQ PR+ E+ VS+I + E
Sbjct: 157 KEVRETASVIYRRALSEDLLPGRSIEGVATAALYASARQLSTPRSIDEVANVSRIDEMEF 216
Query: 185 GRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPI 244
R ++ I++ L V ++ RF S+L LP+ V++ + + A + G+SP+
Sbjct: 217 KRTYRYIVRELSLEVAPADPAQYVPRFASDLDLPDEVERRSRELISNAQADGVTSGKSPV 276
Query: 245 SVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLM 285
+AAAAIY +S ++ K +Q E+ ++ V+EVTIR Y+ +
Sbjct: 277 GLAAAAIYASSLLTNHKVTQSEVSEVTDVSEVTIRNRYQEL 317
>gi|448595941|ref|ZP_21653388.1| transcription initiation factor TFB [Haloferax alexandrinus JCM
10717]
gi|445742395|gb|ELZ93890.1| transcription initiation factor TFB [Haloferax alexandrinus JCM
10717]
Length = 317
Score = 162 bits (410), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 100/290 (34%), Positives = 161/290 (55%), Gaps = 11/290 (3%)
Query: 4 NKVCCYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGP 63
+V C E ++ D G+ +C +CGLV+ +R ID G EWR F N SRVG P
Sbjct: 20 EQVNCPECGSDQIVTDADQGELVCDDCGLVLDERQIDRGPEWRAF-NHSERQSKSRVGAP 78
Query: 64 ENPLLNGSDLSTMIGPGRGDASFDGFG---------MSKYQNR-RTMNSSDRALLNAIRE 113
++ L+T I DA + K+Q R RT ++ +R L A+ E
Sbjct: 79 ITETMHDRGLTTTIDWKDKDAYGRSLSSEKRSQMHRLRKWQERIRTKDAGERNLQFALSE 138
Query: 114 INSMADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEI 173
I+ MA + + +++ + A+ ++++ + ++GRS + +A++ LY ACRQEG+PR+ E+
Sbjct: 139 IDRMASALGVPRSVREVASVIYRRALNEDLIRGRSIEGVATSALYAACRQEGIPRSLDEV 198
Query: 174 CAVSKISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAV 233
VS++ +KEIGR ++ I + L + + F+ RF S L L VQ AT I +
Sbjct: 199 AEVSRVPQKEIGRTYRYISQELGLELKPVDPKQFVPRFASALDLSEEVQAKATEIIDVSA 258
Query: 234 ELDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
E ++ G+SP AAAAIY AS ++K++Q+E+ ++A V EVTIR Y+
Sbjct: 259 EQGLLSGKSPTGFAAAAIYAASLLCNEKKTQREVAEVAQVTEVTIRNRYQ 308
>gi|393796884|ref|ZP_10380248.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosoarchaeum limnia BG20]
Length = 302
Score = 162 bits (410), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 89/278 (32%), Positives = 153/278 (55%), Gaps = 12/278 (4%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLST 75
L+ D + C +CG V+ ++V + G EWR+FSNE G + SR G P + ++ L+T
Sbjct: 19 LVTDATTAENFCGKCGFVITEKVDESGPEWRSFSNE--GENKSRAGVPTSLAMHDMGLAT 76
Query: 76 MIGPGRGDAS---FDGFGMSKYQNRRTMNSS-------DRALLNAIREINSMADRINLTK 125
+I P DA+ S + RT +S DR A E++ + D++ +
Sbjct: 77 VINPQNRDATGKPLTSAMKSTIERLRTWDSRSQVHEPVDRNFRQAFSELDRLKDKLAVGD 136
Query: 126 TIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIG 185
++++A ++++ + ++GRS A+ ++ LY ACR PRT K+I S I +K+I
Sbjct: 137 AVIEKAAYIYRKALEKGLVRGRSISALIASALYAACRDTETPRTLKDIGQASNIKRKDIA 196
Query: 186 RCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPIS 245
RC++L+L+ L + ++ +SR S L ++AAT I + A E I G+ P+
Sbjct: 197 RCYRLLLRELNLKMPVVDPVKCISRIASKAGLSEKTKRAATKILQTAEEQKISAGKDPMG 256
Query: 246 VAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
+AAAA+Y+A + + ++Q+++ + AGV EVTIR YK
Sbjct: 257 LAAAALYVACVTNGESKTQRDVAEAAGVTEVTIRNRYK 294
Score = 43.5 bits (101), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 47/87 (54%)
Query: 208 MSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEI 267
+ R L++ + V + A +I RKA+E +V GRS ++ A+A+Y A + + R+ K+I
Sbjct: 125 LDRLKDKLAVGDAVIEKAAYIYRKALEKGLVRGRSISALIASALYAACRDTETPRTLKDI 184
Query: 268 GDIAGVAEVTIRQSYKLMYPHASKLFP 294
G + + I + Y+L+ + P
Sbjct: 185 GQASNIKRKDIARCYRLLLRELNLKMP 211
>gi|6578937|gb|AAF18139.1|AF205429_1 archaeal transcription factor B [Sulfolobus acidocaldarius]
Length = 309
Score = 162 bits (410), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 101/296 (34%), Positives = 162/296 (54%), Gaps = 11/296 (3%)
Query: 12 PDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGS 71
P +I D G+ IC+E G V+ +R+ID G EWR F+ E+ SRVGGP N ++
Sbjct: 14 PPDKIIFDEERGEYICTETGEVIEERIIDQGPEWRAFTPEEKE-KRSRVGGPLNQTIHDM 72
Query: 72 DLSTMIGPGRGDA---------SFDGFGMSKYQNRRTMNSS-DRALLNAIREINSMADRI 121
+ST+I DA + K+Q R + SS DR L A+ E+ + + +
Sbjct: 73 GISTVIDWKDKDAMGRSLDPKRRLEVLRWRKWQIRTRIQSSIDRNLAQAMNELERIGNLL 132
Query: 122 NLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISK 181
NL K + D A ++++ + ++GRS +++ +A +Y ACR+ + RT EI +K ++
Sbjct: 133 NLPKAVKDEAALIYRKAVEKGLVRGRSIESVVAASIYAACRRMKMARTLDEIAQFTKANR 192
Query: 182 KEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGR 241
KE+ RC++LIL+ L+ V + D+++R + LSL + K A I KA + G+
Sbjct: 193 KEVARCYRLILRELDIEVPVSDPKDYVTRIGTLLSLSGITMKHAAEIIEKAKNSGLTAGK 252
Query: 242 SPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKLFPQDF 297
P +AAAAIY+A+ + ++R+QKEI +AGV EVT+R YK + P
Sbjct: 253 DPAGLAAAAIYIAALLNDERRTQKEIAQVAGVTEVTVRNRYKELTQELKIQIPSQL 308
>gi|354612079|ref|ZP_09030031.1| Transcription initiation factor IIB [Halobacterium sp. DL1]
gi|353191657|gb|EHB57163.1| Transcription initiation factor IIB [Halobacterium sp. DL1]
Length = 320
Score = 162 bits (410), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 98/286 (34%), Positives = 158/286 (55%), Gaps = 11/286 (3%)
Query: 8 CYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPL 67
C E L++ + +C +CGLVV + ID G EWR F N + + SRVG P
Sbjct: 26 CPECSSDNLVKSSDRAELVCEDCGLVVEEEQIDPGPEWRAF-NHQERQEKSRVGAPTTQT 84
Query: 68 LNGSDLSTMIGPGRGDASFDGFG---------MSKYQNR-RTMNSSDRALLNAIREINSM 117
++ L+T I DA + K+Q R RT ++ +R L A+ EI+ M
Sbjct: 85 MHDKGLTTTIDWKDKDAYGRSISSKKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDRM 144
Query: 118 ADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVS 177
A + + +++ + A+ ++++ ++GRS + +A++ LY ACR+EG+PR+ +EI VS
Sbjct: 145 ASALGVPRSVREVASVIYRRALKEDLIRGRSIEGVATSALYAACRKEGIPRSLEEISEVS 204
Query: 178 KISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDI 237
++ +KEIGR ++ I + L + + ++ RFCS L L VQ A I E +
Sbjct: 205 RVERKEIGRTYRYISQELGLEMKPVDPKKYVPRFCSELELSEEVQSKANEIIETTAEKGL 264
Query: 238 VPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
+ G+SP AAAAIY AS ++K++Q+E+ D+A V EVTIR Y+
Sbjct: 265 LSGKSPTGYAAAAIYAASLLCNEKKTQREVADVAQVTEVTIRNRYQ 310
>gi|448347239|ref|ZP_21536116.1| Transcription factor TFIIB cyclin-related protein [Natrinema
altunense JCM 12890]
gi|445631076|gb|ELY84319.1| Transcription factor TFIIB cyclin-related protein [Natrinema
altunense JCM 12890]
Length = 296
Score = 162 bits (409), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 97/286 (33%), Positives = 157/286 (54%), Gaps = 11/286 (3%)
Query: 8 CYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPL 67
C E L++ G+ +C +CGL+V ID G EWR F N + SRVG P
Sbjct: 2 CDECDGGTLVKSEDQGELVCDQCGLIVEGTNIDHGPEWRAF-NHSERQNKSRVGAPTTQT 60
Query: 68 LNGSDLSTMIGPGRGDASFDGFG---------MSKYQNR-RTMNSSDRALLNAIREINSM 117
++ L+T I DA + K+Q R RT ++ +R L A+ E + M
Sbjct: 61 MHDKGLTTSIDWKNQDAYGRSISSDKRNQMRRLRKWQERIRTKDAGERNLQFALSETDRM 120
Query: 118 ADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVS 177
A + + +++ + A ++++ D ++GRS + +A++ LY ACR EG+PR+ +E+ AVS
Sbjct: 121 ASSLAIPRSVREVACVIYRRALDEDLIRGRSIEGVATSTLYAACRMEGIPRSLEEVAAVS 180
Query: 178 KISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDI 237
++ +KEIGR ++ + + L ++ + ++ RFCS L L VQ A I E +
Sbjct: 181 RVERKEIGRTYRYVAQELNLEMEPVNPKKYVPRFCSELELSEEVQVKANEIIDTTTEKGL 240
Query: 238 VPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
+ G+SP AAAAIY AS ++K++Q+E+ D+A V EVTIR Y+
Sbjct: 241 LSGKSPTGYAAAAIYAASLLCNEKKTQREVSDVAQVTEVTIRNRYQ 286
>gi|223478727|ref|YP_002582898.1| transcription initiation factor iiB [Thermococcus sp. AM4]
gi|214033953|gb|EEB74779.1| Transcription initiation factor iiB [Thermococcus sp. AM4]
Length = 303
Score = 162 bits (409), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 93/275 (33%), Positives = 155/275 (56%), Gaps = 11/275 (4%)
Query: 19 DYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLSTMIG 78
D G+ +C CG V+ + VID G EWR F ++ +R G P +++ LST I
Sbjct: 18 DRTRGELVCRVCGYVLEENVIDEGPEWRAFDPDQRA-RRARTGAPMTLMIHDKGLSTDID 76
Query: 79 PGRGDA---SFDGFGMSK------YQNRRTMN-SSDRALLNAIREINSMADRINLTKTIV 128
D G SK +Q R +N +++R L A+ E++ MA ++ L + +
Sbjct: 77 WRDKDIHGNQITGMYRSKLRRLRMWQRRMRINDAAERNLAFALSELDRMAAQMRLPRRVK 136
Query: 129 DRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGRCF 188
+ A L+++ K ++GRS + + SA LY ACR EG+PRT EI VSK++KKEIGR +
Sbjct: 137 EAAAALYRKAVMKKLIRGRSIEGMVSAALYAACRMEGIPRTLDEIARVSKVTKKEIGRSY 196
Query: 189 KLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAA 248
+ + + L ++ + D++ RF L + + ++ A I ++A++ I G+ P +AA
Sbjct: 197 RFMARGLGLNLRPTSPIDYVDRFGDALGVSSKTKQRAKEILQEAIKRGITSGKGPTGLAA 256
Query: 249 AAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
AA+Y+AS +K++Q+E+ ++A V EVT+R YK
Sbjct: 257 AALYVASLLEGEKKTQREVAEVAHVTEVTVRNRYK 291
Score = 47.0 bits (110), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 43/78 (55%)
Query: 208 MSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEI 267
+ R + + LP V++AA + RKAV ++ GRS + +AA+Y A + R+ EI
Sbjct: 122 LDRMAAQMRLPRRVKEAAAALYRKAVMKKLIRGRSIEGMVSAALYAACRMEGIPRTLDEI 181
Query: 268 GDIAGVAEVTIRQSYKLM 285
++ V + I +SY+ M
Sbjct: 182 ARVSKVTKKEIGRSYRFM 199
>gi|448728119|ref|ZP_21710451.1| transcription initiation factor TFB [Halococcus saccharolyticus DSM
5350]
gi|445797553|gb|EMA48024.1| transcription initiation factor TFB [Halococcus saccharolyticus DSM
5350]
Length = 325
Score = 162 bits (409), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 99/286 (34%), Positives = 159/286 (55%), Gaps = 11/286 (3%)
Query: 8 CYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPL 67
C E L++ G+ +C +CGLVV + ID G EWR F N SRVG P
Sbjct: 31 CPECDSENLVKSADRGELVCDDCGLVVEEENIDPGPEWRAF-NHAERQQKSRVGAPTTQT 89
Query: 68 LNGSDLSTMIGPGRGDASFDGFG---------MSKYQNR-RTMNSSDRALLNAIREINSM 117
++ L+T I DA + K+Q R RT ++ +R L A+ EI+ M
Sbjct: 90 MHDKGLTTTIDWKDKDAYGRSISSKKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDRM 149
Query: 118 ADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVS 177
A + + +++ + A+ ++++ ++GRS + +A++ LY ACR+EG+PR+ +EI VS
Sbjct: 150 ASALGVPRSVREVASVIYRRALSDDLIRGRSIEGVATSALYAACRKEGIPRSLEEISEVS 209
Query: 178 KISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDI 237
++++KEIGR ++ I + L + + ++ RFCS L+L VQ A I E +
Sbjct: 210 RVNRKEIGRTYRYISQELGLEMRPVDPKKYVPRFCSELTLSEEVQSKANDIIETTAEKGL 269
Query: 238 VPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
+ G+SP AAAAIY AS ++K++Q+E+ D+A V EVTIR Y+
Sbjct: 270 LSGKSPTGYAAAAIYAASLLCNEKKTQREVADVAQVTEVTIRNRYQ 315
>gi|73920958|sp|Q9UWN6.2|TF2B_SULAC RecName: Full=Transcription initiation factor IIB; Short=TFIIB
Length = 307
Score = 162 bits (409), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 100/282 (35%), Positives = 160/282 (56%), Gaps = 11/282 (3%)
Query: 12 PDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGS 71
P +I D G+ IC+E G V+ +R+ID G EWR F+ E+ SRVGGP N ++
Sbjct: 14 PPDKIIFDEERGEYICTETGEVIEERIIDQGPEWRAFTPEEKE-KRSRVGGPLNQTIHDM 72
Query: 72 DLSTMIGPGRGDA---------SFDGFGMSKYQNRRTMNSS-DRALLNAIREINSMADRI 121
+ST+I DA + K+Q R + SS DR L A+ E+ + + +
Sbjct: 73 GISTVIDWKDKDAMGRSLDPKRRLEVLRWRKWQIRTRIQSSIDRNLAQAMNELERIGNLL 132
Query: 122 NLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISK 181
NL K + D A ++++ + ++GRS +++ +A +Y ACR+ + RT EI +K ++
Sbjct: 133 NLPKAVKDEAALIYRKAVEKGLVRGRSIESVVAASIYAACRRMKMARTLDEIAQFTKANR 192
Query: 182 KEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGR 241
KE+ RC++LIL+ L+ V + D+++R + LSL + K A I KA + G+
Sbjct: 193 KEVARCYRLILRELDIEVPVSDPKDYVTRIGTLLSLSGITMKHAAEIIEKAKNSGLTAGK 252
Query: 242 SPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
P +AAAAIY+A+ + ++R+QKEI +AGV EVT+R YK
Sbjct: 253 DPAGLAAAAIYIAALLNDERRTQKEIAQVAGVTEVTVRNRYK 294
Score = 44.7 bits (104), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 54/106 (50%), Gaps = 3/106 (2%)
Query: 183 EIGRCFKLILKA-LETSVD--LITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVP 239
E+ R K ++ +++S+D L + + R + L+LP V+ A I RKAVE +V
Sbjct: 97 EVLRWRKWQIRTRIQSSIDRNLAQAMNELERIGNLLNLPKAVKDEAALIYRKAVEKGLVR 156
Query: 240 GRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLM 285
GRS SV AA+IY A + R+ EI + + Y+L+
Sbjct: 157 GRSIESVVAASIYAACRRMKMARTLDEIAQFTKANRKEVARCYRLI 202
>gi|448733008|ref|ZP_21715254.1| transcription initiation factor TFB [Halococcus salifodinae DSM
8989]
gi|445803341|gb|EMA53638.1| transcription initiation factor TFB [Halococcus salifodinae DSM
8989]
Length = 325
Score = 162 bits (409), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 99/286 (34%), Positives = 159/286 (55%), Gaps = 11/286 (3%)
Query: 8 CYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPL 67
C E L++ G+ +C +CGLVV + ID G EWR F N SRVG P
Sbjct: 31 CPECDSENLVKSADRGELVCDDCGLVVEEENIDPGPEWRAF-NHAERQQKSRVGAPTTQT 89
Query: 68 LNGSDLSTMIGPGRGDASFDGFG---------MSKYQNR-RTMNSSDRALLNAIREINSM 117
++ L+T I DA + K+Q R RT ++ +R L A+ EI+ M
Sbjct: 90 MHDKGLTTTIDWKDKDAYGRSISSKKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDRM 149
Query: 118 ADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVS 177
A + + +++ + A+ ++++ ++GRS + +A++ LY ACR+EG+PR+ +EI VS
Sbjct: 150 ASALGVPRSVREVASVIYRRALSDDLIRGRSIEGVATSALYAACRKEGIPRSLEEISEVS 209
Query: 178 KISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDI 237
++++KEIGR ++ I + L + + ++ RFCS L+L VQ A I E +
Sbjct: 210 RVNRKEIGRTYRYISQELGLEMRPVDPKKYVPRFCSELTLSEEVQSKANDIIETTAEKGL 269
Query: 238 VPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
+ G+SP AAAAIY AS ++K++Q+E+ D+A V EVTIR Y+
Sbjct: 270 LSGKSPTGYAAAAIYAASLLCNEKKTQREVADVAQVTEVTIRNRYQ 315
>gi|269862742|ref|XP_002650958.1| transcription initiation factor IIB [Enterocytozoon bieneusi H348]
gi|220065357|gb|EED43100.1| transcription initiation factor IIB [Enterocytozoon bieneusi H348]
Length = 213
Score = 162 bits (409), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 84/207 (40%), Positives = 130/207 (62%), Gaps = 4/207 (1%)
Query: 100 MNSSDRALLNAIREINSMADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYI 159
M DR L N + I S +R LT+TI+D+A +FK V K LKG++ + AC+YI
Sbjct: 5 MRGPDRVLKNGFKLIQSFCERGFLTQTIIDKAQAIFKDVESKKLLKGKNLEGCIGACIYI 64
Query: 160 ACRQEGVPRTFKEICAVSKISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPN 219
AC+ EG PRTFKEI ++ + K+EIG+C+KLI K ++T+ ++ T D + RFCS+L+L
Sbjct: 65 ACKTEGCPRTFKEISVITVVPKREIGKCYKLISKEIDTT-RIMATADIVGRFCSDLNLNA 123
Query: 220 MVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRS-QKEIGDIAGVAEVTI 278
+Q A +IA+K ++ + GRSP S+A+A IY+ D QK+I + V +VTI
Sbjct: 124 KIQNTARYIAKKVQDIGCLAGRSPDSIASAIIYLTLCLYPDFLFLQKDIQYVTNVTDVTI 183
Query: 279 RQSYKLMYPHASKLFPQDFVFHTPIHE 305
R +YK + P+ ++ P++F T ++E
Sbjct: 184 RNTYKDLLPYKKEIIPEEFT--TAVNE 208
>gi|70606656|ref|YP_255526.1| transcription initiation factor IIB [Sulfolobus acidocaldarius DSM
639]
gi|449066878|ref|YP_007433960.1| transcription initiation factor IIB [Sulfolobus acidocaldarius N8]
gi|449069150|ref|YP_007436231.1| transcription initiation factor IIB [Sulfolobus acidocaldarius
Ron12/I]
gi|68567304|gb|AAY80233.1| transcription initiation factor B [Sulfolobus acidocaldarius DSM
639]
gi|449035386|gb|AGE70812.1| transcription initiation factor IIB [Sulfolobus acidocaldarius N8]
gi|449037658|gb|AGE73083.1| transcription initiation factor IIB [Sulfolobus acidocaldarius
Ron12/I]
Length = 311
Score = 162 bits (409), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 100/282 (35%), Positives = 160/282 (56%), Gaps = 11/282 (3%)
Query: 12 PDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGS 71
P +I D G+ IC+E G V+ +R+ID G EWR F+ E+ SRVGGP N ++
Sbjct: 18 PPDKIIFDEERGEYICTETGEVIEERIIDQGPEWRAFTPEEKE-KRSRVGGPLNQTIHDM 76
Query: 72 DLSTMIGPGRGDA---------SFDGFGMSKYQNRRTMNSS-DRALLNAIREINSMADRI 121
+ST+I DA + K+Q R + SS DR L A+ E+ + + +
Sbjct: 77 GISTVIDWKDKDAMGRSLDPKRRLEVLRWRKWQIRTRIQSSIDRNLAQAMNELERIGNLL 136
Query: 122 NLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISK 181
NL K + D A ++++ + ++GRS +++ +A +Y ACR+ + RT EI +K ++
Sbjct: 137 NLPKAVKDEAALIYRKAVEKGLVRGRSIESVVAASIYAACRRMKMARTLDEIAQFTKANR 196
Query: 182 KEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGR 241
KE+ RC++LIL+ L+ V + D+++R + LSL + K A I KA + G+
Sbjct: 197 KEVARCYRLILRELDIEVPVSDPKDYVTRIGTLLSLSGITMKHAAEIIEKAKNSGLTAGK 256
Query: 242 SPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
P +AAAAIY+A+ + ++R+QKEI +AGV EVT+R YK
Sbjct: 257 DPAGLAAAAIYIAALLNDERRTQKEIAQVAGVTEVTVRNRYK 298
Score = 44.7 bits (104), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 54/106 (50%), Gaps = 3/106 (2%)
Query: 183 EIGRCFKLILKA-LETSVD--LITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVP 239
E+ R K ++ +++S+D L + + R + L+LP V+ A I RKAVE +V
Sbjct: 101 EVLRWRKWQIRTRIQSSIDRNLAQAMNELERIGNLLNLPKAVKDEAALIYRKAVEKGLVR 160
Query: 240 GRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLM 285
GRS SV AA+IY A + R+ EI + + Y+L+
Sbjct: 161 GRSIESVVAASIYAACRRMKMARTLDEIAQFTKANRKEVARCYRLI 206
>gi|15789546|ref|NP_279370.1| transcription initiation factor IIB [Halobacterium sp. NRC-1]
gi|169235257|ref|YP_001688457.1| transcription initiation factor TFB [Halobacterium salinarum R1]
gi|14195248|sp|Q9HSF7.1|TF2B7_HALSA RecName: Full=Transcription initiation factor IIB 7; Short=TFIIB 7
gi|10579892|gb|AAG18850.1| transcription initiation factor IIB [Halobacterium sp. NRC-1]
gi|167726323|emb|CAP13104.1| transcription initiation factor TFB [Halobacterium salinarum R1]
Length = 323
Score = 162 bits (409), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 96/278 (34%), Positives = 157/278 (56%), Gaps = 11/278 (3%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLST 75
L++ + +C++CGLVV + ID G EWR F N + + SRVG P ++ L+T
Sbjct: 37 LVKSSDRAELVCNDCGLVVEEEQIDPGPEWRAF-NHQERQEKSRVGAPTTQTMHDKGLTT 95
Query: 76 MIGPGRGDASFDGFG---------MSKYQNR-RTMNSSDRALLNAIREINSMADRINLTK 125
I DA + K+Q R RT ++ +R L A+ EI+ MA + + +
Sbjct: 96 TIDWKDKDAYGRSISSKKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDRMASALGVPR 155
Query: 126 TIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIG 185
++ + A+ ++++ ++GRS + +A++ LY ACR+EG+PR+ +EI VS++ +KEIG
Sbjct: 156 SVREVASVIYRRALKEDLIRGRSIEGVATSALYAACRKEGIPRSLEEISEVSRVERKEIG 215
Query: 186 RCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPIS 245
R ++ I + L + + ++ RFCS L L VQ A I E ++ G+SP
Sbjct: 216 RTYRYISQELGLEMKPVDPKKYVPRFCSELELTEEVQSKANEIIETTAEEGLLSGKSPTG 275
Query: 246 VAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
AAAAIY AS ++K++Q+E+ D+A V EVTIR Y+
Sbjct: 276 YAAAAIYAASLLCNEKKTQREVADVAQVTEVTIRNRYQ 313
>gi|393796305|ref|ZP_10379669.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosoarchaeum limnia BG20]
Length = 287
Score = 162 bits (409), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 86/278 (30%), Positives = 155/278 (55%), Gaps = 11/278 (3%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLST 75
++ D G++ C +CG V+ + + D G EWR+FS E G DP+R G P + ++ L+T
Sbjct: 1 MLTDNDTGERFCGKCGFVISETLQDSGPEWRSFSKE-GGSDPTRTGAPTSLAIHDRGLAT 59
Query: 76 MIGPGRGDAS---FDGFGMSKYQNRRTMNS-------SDRALLNAIREINSMADRINLTK 125
+I P D+S S + RT +S SDR L A+ E+ + D++ ++
Sbjct: 60 IINPINRDSSGKPLTSSMKSTIERLRTWDSRSKVHASSDRNLRQALSELTRLKDKLAVSD 119
Query: 126 TIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIG 185
+V++A ++++ D ++GRS A+ ++ LY ACR PRT K++ I KK+I
Sbjct: 120 AVVEKAAYIYRKALDKGLVRGRSISALIASALYAACRDTETPRTLKDVSDAGNIKKKDIA 179
Query: 186 RCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPIS 245
RC++++ + LE + ++ ++R S L + ++ A + + A E + G+ P+
Sbjct: 180 RCYRILHQELELKMPVVDPIQCIARIASKLGISEKTKRYAVKVLKTAQEHEESAGKDPMG 239
Query: 246 VAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
+AAAA+Y++ ++S+ +Q++I + A V EVTIR YK
Sbjct: 240 LAAAALYLSCVSNSENMTQRDIAEAASVTEVTIRNRYK 277
Score = 43.1 bits (100), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 48/87 (55%)
Query: 208 MSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEI 267
++R L++ + V + A +I RKA++ +V GRS ++ A+A+Y A + + R+ K++
Sbjct: 108 LTRLKDKLAVSDAVVEKAAYIYRKALDKGLVRGRSISALIASALYAACRDTETPRTLKDV 167
Query: 268 GDIAGVAEVTIRQSYKLMYPHASKLFP 294
D + + I + Y++++ P
Sbjct: 168 SDAGNIKKKDIARCYRILHQELELKMP 194
>gi|448336354|ref|ZP_21525454.1| Transcription factor TFIIB cyclin-related protein [Natrinema
pallidum DSM 3751]
gi|445629246|gb|ELY82538.1| Transcription factor TFIIB cyclin-related protein [Natrinema
pallidum DSM 3751]
Length = 321
Score = 162 bits (409), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 97/286 (33%), Positives = 157/286 (54%), Gaps = 11/286 (3%)
Query: 8 CYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPL 67
C E L++ G+ +C +CGL+V ID G EWR F N + SRVG P
Sbjct: 27 CDECDGGTLVKSEDQGELVCDQCGLIVEGTNIDHGPEWRAF-NHSERQNKSRVGAPTTQT 85
Query: 68 LNGSDLSTMIGPGRGDASFDGFG---------MSKYQNR-RTMNSSDRALLNAIREINSM 117
++ L+T I DA + K+Q R RT ++ +R L A+ E + M
Sbjct: 86 MHDKGLTTSIDWKNQDAYGRSISSDKRNQMRRLRKWQERIRTKDAGERNLQFALSETDRM 145
Query: 118 ADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVS 177
A + + +++ + A ++++ D ++GRS + +A++ LY ACR EG+PR+ +E+ AVS
Sbjct: 146 ASSLAIPRSVREVACVIYRRALDEDLIRGRSIEGVATSTLYAACRMEGIPRSLEEVAAVS 205
Query: 178 KISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDI 237
++ +KEIGR ++ + + L ++ + ++ RFCS L L VQ A I E +
Sbjct: 206 RVERKEIGRTYRYVAQELNLEMEPVNPKKYVPRFCSELELSEEVQVKANEIIDTTTEKGL 265
Query: 238 VPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
+ G+SP AAAAIY AS ++K++Q+E+ D+A V EVTIR Y+
Sbjct: 266 LSGKSPTGYAAAAIYAASLLCNEKKTQREVSDVAQVTEVTIRNRYQ 311
>gi|397772462|ref|YP_006540008.1| Transcription factor TFIIB cyclin-related protein [Natrinema sp.
J7-2]
gi|448342670|ref|ZP_21531616.1| Transcription factor TFIIB cyclin-related protein [Natrinema gari
JCM 14663]
gi|397681555|gb|AFO55932.1| Transcription factor TFIIB cyclin-related protein [Natrinema sp.
J7-2]
gi|445625065|gb|ELY78435.1| Transcription factor TFIIB cyclin-related protein [Natrinema gari
JCM 14663]
Length = 321
Score = 162 bits (409), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 97/286 (33%), Positives = 157/286 (54%), Gaps = 11/286 (3%)
Query: 8 CYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPL 67
C E L++ G+ +C +CGL+V ID G EWR F N + SRVG P
Sbjct: 27 CDECDGGTLVKSEDQGELVCDQCGLIVEGTNIDHGPEWRAF-NHSERQNKSRVGAPTTQT 85
Query: 68 LNGSDLSTMIGPGRGDASFDGFG---------MSKYQNR-RTMNSSDRALLNAIREINSM 117
++ L+T I DA + K+Q R RT ++ +R L A+ E + M
Sbjct: 86 MHDKGLTTSIDWKNQDAYGRSISSDKRNQMRRLRKWQERIRTKDAGERNLQFALSETDRM 145
Query: 118 ADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVS 177
A + + +++ + A ++++ D ++GRS + +A++ LY ACR EG+PR+ +E+ AVS
Sbjct: 146 ASSLAIPRSVREVACVIYRRALDEDLIRGRSIEGVATSTLYAACRMEGIPRSLEEVAAVS 205
Query: 178 KISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDI 237
++ +KEIGR ++ + + L ++ + ++ RFCS L L VQ A I E +
Sbjct: 206 RVERKEIGRTYRYVAQELNLEMEPVNPKKYVPRFCSELELSEEVQVKANEIIDTTTEKGL 265
Query: 238 VPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
+ G+SP AAAAIY AS ++K++Q+E+ D+A V EVTIR Y+
Sbjct: 266 LSGKSPTGYAAAAIYAASLLCNEKKTQREVSDVAQVTEVTIRNRYQ 311
>gi|448323476|ref|ZP_21512935.1| transcription initiation factor TFB [Natronococcus amylolyticus DSM
10524]
gi|445599623|gb|ELY53653.1| transcription initiation factor TFB [Natronococcus amylolyticus DSM
10524]
Length = 376
Score = 162 bits (409), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 91/275 (33%), Positives = 150/275 (54%), Gaps = 19/275 (6%)
Query: 23 GDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLSTMIGPGRG 82
G+ I GL++ D ID G EWR F N+ SRVG P ++ L+T I
Sbjct: 86 GELIHEPTGLILEDDQIDRGPEWRAF-NQSERQSKSRVGAPITQTMHDKGLTTQIDW--- 141
Query: 83 DASFDGFGMS-------------KYQNR-RTMNSSDRALLNAIREINSMADRINLTKTIV 128
S D +G S K+Q R RT ++ +R L A+ EI+ M+ + + +++
Sbjct: 142 -RSKDAYGRSLSSEKRNQMNRLRKWQERIRTKDAGERNLQFALSEIDRMSSALGVPRSVR 200
Query: 129 DRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGRCF 188
+ A+ ++++ ++GRS + +++A LY ACRQEG+PR+ E+ VS++ KEI R +
Sbjct: 201 EVASVMYRRALSEDLIRGRSIEGMSTAVLYAACRQEGIPRSLSEVTEVSRVENKEIARTY 260
Query: 189 KLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAA 248
+ + + LE + + ++ RFCS L + +Q A I + E I+ G+SP AA
Sbjct: 261 RYVSQELELEMRPVDPKKYLPRFCSQLDVSERIQSKAEEIIDTSAEQGILSGKSPTGFAA 320
Query: 249 AAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
AAIY +S +K++QK++ ++A V EVTIR Y+
Sbjct: 321 AAIYSSSLLYGEKKTQKQVAEVAQVTEVTIRNRYQ 355
>gi|288559971|ref|YP_003423457.1| transcription initiation factor TFIIB Tfb1 [Methanobrevibacter
ruminantium M1]
gi|288542681|gb|ADC46565.1| transcription initiation factor TFIIB Tfb1 [Methanobrevibacter
ruminantium M1]
Length = 264
Score = 161 bits (408), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 89/255 (34%), Positives = 146/255 (57%), Gaps = 15/255 (5%)
Query: 41 VGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLSTMIG-----------PGRGDASFDGF 89
+G EWR F +E+ +RVG P ++ LSTMI P R A + +
Sbjct: 1 MGPEWRAFDHEQRD-KRTRVGAPITYTIHDKGLSTMIDWRNKDIYGRDIPARNRAQW--Y 57
Query: 90 GMSKYQNR-RTMNSSDRALLNAIREINSMADRINLTKTIVDRANNLFKQVHDGKNLKGRS 148
+ K+Q + R +++R L A+ E++ + R+ L +++ + A+ +++ + K ++GRS
Sbjct: 58 RLRKWQRKIRISGATERNLAFALSELDRDSSRLGLPRSVREAASVIYRSAVENKLIRGRS 117
Query: 149 NDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGRCFKLILKALETSVDLITTGDFM 208
+ + +A LY ACRQ VPRT EI VS++SKKE+GR ++ + + L + + D++
Sbjct: 118 IEGVVAASLYAACRQCKVPRTLDEIAEVSRVSKKEVGRTYRFLTRELHIKLPPTSPVDYV 177
Query: 209 SRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEIG 268
RF S L L VQ + I KA+E + GR P VAAAA+Y+AS ++++Q+++
Sbjct: 178 PRFASELGLSGEVQSRSIEIIEKAMEKGLTSGRGPTGVAAAALYIASVLLGERKTQRDVA 237
Query: 269 DIAGVAEVTIRQSYK 283
D+AGV EVTIR YK
Sbjct: 238 DVAGVTEVTIRNRYK 252
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 52/96 (54%), Gaps = 1/96 (1%)
Query: 208 MSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEI 267
+ R S L LP V++AA+ I R AVE ++ GRS V AA++Y A + R+ EI
Sbjct: 83 LDRDSSRLGLPRSVREAASVIYRSAVENKLIRGRSIEGVVAASLYAACRQCKVPRTLDEI 142
Query: 268 GDIAGVAEVTIRQSYKLMYPHAS-KLFPQDFVFHTP 302
+++ V++ + ++Y+ + KL P V + P
Sbjct: 143 AEVSRVSKKEVGRTYRFLTRELHIKLPPTSPVDYVP 178
>gi|161527532|ref|YP_001581358.1| transcription factor TFIIB cyclin-related protein [Nitrosopumilus
maritimus SCM1]
gi|160338833|gb|ABX11920.1| Transcription factor TFIIB cyclin-related [Nitrosopumilus maritimus
SCM1]
Length = 301
Score = 161 bits (408), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 83/290 (28%), Positives = 159/290 (54%), Gaps = 11/290 (3%)
Query: 4 NKVCCYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGP 63
K C L+ D +G+ CS+CG V+ +++ + G EWR+F+ ++ G D +R G P
Sbjct: 5 TKELCPRCAQGKLVTDNESGEMFCSKCGFVITEKLQEAGPEWRSFTQDEHG-DRARAGAP 63
Query: 64 ENPLLNGSDLSTMIGPGRGDAS---FDGFGMSKYQNRRTMNSS-------DRALLNAIRE 113
+ ++ L+T+I P DAS S + RT +S DR A E
Sbjct: 64 TSLTMHDMGLATIINPVNKDASGRPLTASMKSTIERLRTWDSRSQVHEPVDRNFRQAFSE 123
Query: 114 INSMADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEI 173
+N + D++ ++ ++++A ++++ D ++GRS A+ ++ LY ACR PR K++
Sbjct: 124 LNRLKDKLAISDAVIEKAAYIYRKALDKGLVRGRSISALMASALYAACRDTETPRNLKDV 183
Query: 174 CAVSKISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAV 233
+ I +K+I RC++L++K L+ + + + ++R S + + ++ A + +KA
Sbjct: 184 EQAANIKRKDIARCYRLLVKELDLKMPVTDSIQCVARIASRIGIAEKTKRYAVKVLKKAQ 243
Query: 234 ELDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
E ++ G+ P+ +AAAA+Y++ + + ++Q++I + A V EVTIR YK
Sbjct: 244 ENEVSAGKDPMGLAAAALYLSCVKNGEDKTQRDIAEAANVTEVTIRNRYK 293
Score = 40.4 bits (93), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 46/87 (52%)
Query: 208 MSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEI 267
++R L++ + V + A +I RKA++ +V GRS ++ A+A+Y A + + R+ K++
Sbjct: 124 LNRLKDKLAISDAVIEKAAYIYRKALDKGLVRGRSISALMASALYAACRDTETPRNLKDV 183
Query: 268 GDIAGVAEVTIRQSYKLMYPHASKLFP 294
A + I + Y+L+ P
Sbjct: 184 EQAANIKRKDIARCYRLLVKELDLKMP 210
>gi|448298042|ref|ZP_21488075.1| Transcription factor TFIIB cyclin-related protein [Natronorubrum
tibetense GA33]
gi|445592249|gb|ELY46438.1| Transcription factor TFIIB cyclin-related protein [Natronorubrum
tibetense GA33]
Length = 296
Score = 161 bits (408), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 97/286 (33%), Positives = 157/286 (54%), Gaps = 11/286 (3%)
Query: 8 CYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPL 67
C E L++ G+ +C +CGL+V ID G EWR F N + SRVG P
Sbjct: 2 CDECDGGTLVKSEDQGELVCDQCGLIVEGANIDRGPEWRAF-NHSERQNKSRVGAPTTQT 60
Query: 68 LNGSDLSTMIGPGRGDASFDGFG---------MSKYQNR-RTMNSSDRALLNAIREINSM 117
++ L+T I DA + K+Q R RT ++ +R L A+ E + M
Sbjct: 61 MHDKGLTTSIDWKNQDAYGRSISSDKRNQMRRLRKWQERIRTKDAGERNLQFALSETDRM 120
Query: 118 ADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVS 177
A + + +++ + A ++++ D ++GRS + +A++ LY ACR EG+PR+ +E+ AVS
Sbjct: 121 ASSLGIPRSVREVACVMYRRALDEDLIRGRSIEGVATSTLYAACRMEGIPRSLEEVAAVS 180
Query: 178 KISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDI 237
++ +KEIGR ++ + + L ++ + ++ RFCS L L VQ A I E +
Sbjct: 181 RVERKEIGRTYRYVAQELGLEMEPVNPKKYVPRFCSELELSEEVQVKANEIIDTTTEKGL 240
Query: 238 VPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
+ G+SP AAAAIY AS ++K++Q+E+ D+A V EVTIR Y+
Sbjct: 241 LSGKSPTGYAAAAIYAASLLCNEKKTQREVSDVAQVTEVTIRNRYQ 286
>gi|240102532|ref|YP_002958841.1| transcription initiation factor IIB [Thermococcus gammatolerans
EJ3]
gi|239910086|gb|ACS32977.1| Transcription initiation factor TFIIB (tfb) [Thermococcus
gammatolerans EJ3]
Length = 303
Score = 161 bits (408), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 92/275 (33%), Positives = 155/275 (56%), Gaps = 11/275 (4%)
Query: 19 DYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLSTMIG 78
D G+ +C CG V+ + V+D G EWR F ++ +R G P +++ LST I
Sbjct: 18 DRTRGELVCRVCGYVLEENVVDEGPEWRAFDPDQRA-RRARTGAPMTLMIHDKGLSTDID 76
Query: 79 PGRGDA---SFDGFGMSK------YQNRRTMN-SSDRALLNAIREINSMADRINLTKTIV 128
D G SK +Q R +N +++R L A+ E++ MA ++ L + +
Sbjct: 77 WRDKDIHGNQITGMYRSKLRRLRMWQRRMRINDAAERNLAFALSELDRMAAQMRLPRRVK 136
Query: 129 DRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGRCF 188
+ A L+++ K ++GRS + + SA LY ACR EG+PRT EI VSK++KKEIGR +
Sbjct: 137 EAAAALYRKAVMKKLIRGRSIEGMVSAALYAACRMEGIPRTLDEIARVSKVTKKEIGRSY 196
Query: 189 KLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAA 248
+ + + L ++ + D++ RF L + + ++ A I ++A++ I G+ P +AA
Sbjct: 197 RFMARGLGLNLRPTSPIDYVDRFGDALGVSSKTKQRAKEILQEAIKRGITSGKGPTGLAA 256
Query: 249 AAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
AA+Y+AS +K++Q+E+ ++A V EVT+R YK
Sbjct: 257 AALYVASLLEGEKKTQREVAEVAHVTEVTVRNRYK 291
Score = 47.0 bits (110), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 43/78 (55%)
Query: 208 MSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEI 267
+ R + + LP V++AA + RKAV ++ GRS + +AA+Y A + R+ EI
Sbjct: 122 LDRMAAQMRLPRRVKEAAAALYRKAVMKKLIRGRSIEGMVSAALYAACRMEGIPRTLDEI 181
Query: 268 GDIAGVAEVTIRQSYKLM 285
++ V + I +SY+ M
Sbjct: 182 ARVSKVTKKEIGRSYRFM 199
>gi|409730080|ref|ZP_11271675.1| transcription initiation factor IIB [Halococcus hamelinensis 100A6]
gi|448723223|ref|ZP_21705747.1| transcription initiation factor IIB [Halococcus hamelinensis 100A6]
gi|445787965|gb|EMA38691.1| transcription initiation factor IIB [Halococcus hamelinensis 100A6]
Length = 321
Score = 161 bits (407), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 99/286 (34%), Positives = 159/286 (55%), Gaps = 11/286 (3%)
Query: 8 CYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPL 67
C E L++ G+ IC +CGLVV + ID G EWR F N SRVG P
Sbjct: 27 CPECDSENLVKSADRGELICEDCGLVVEEENIDPGPEWRAF-NHAERQQKSRVGAPTTQT 85
Query: 68 LNGSDLSTMIGPGRGDASFDGFG---------MSKYQNR-RTMNSSDRALLNAIREINSM 117
++ L+T I DA + K+Q R RT ++ +R L A+ EI+ M
Sbjct: 86 MHDKGLTTTIDWKDKDAYGRSISSKKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDRM 145
Query: 118 ADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVS 177
A + + +++ + A+ ++++ ++GRS + +A++ LY ACR+EG+PR+ +EI VS
Sbjct: 146 ASALGVPRSVREVASVIYRRSLAEDLIRGRSIEGVATSALYAACRKEGIPRSLEEISEVS 205
Query: 178 KISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDI 237
++++KEIGR ++ + + L + + ++ RFCS L+L VQ A I E +
Sbjct: 206 RVNRKEIGRTYRYVSQELALEMRPVDPKKYVPRFCSELTLSEEVQSKANDIIETTAEKGL 265
Query: 238 VPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
+ G+SP AAAAIY AS ++K++Q+E+ D+A V EVTIR Y+
Sbjct: 266 LSGKSPTGYAAAAIYAASLLCNEKKTQREVADVAQVTEVTIRNRYQ 311
>gi|448312070|ref|ZP_21501821.1| Transcription factor TFIIB cyclin-related protein [Natronolimnobius
innermongolicus JCM 12255]
gi|445603031|gb|ELY57000.1| Transcription factor TFIIB cyclin-related protein [Natronolimnobius
innermongolicus JCM 12255]
Length = 323
Score = 161 bits (407), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 97/286 (33%), Positives = 156/286 (54%), Gaps = 11/286 (3%)
Query: 8 CYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPL 67
C E L++ G+ +C ECGL+V ID G EWR F N + SRVG P
Sbjct: 29 CEECESGTLVKSQDQGELVCDECGLIVEGSNIDRGPEWRAF-NHSERQNKSRVGAPTTQT 87
Query: 68 LNGSDLSTMIGPGRGDASFDGFG---------MSKYQNR-RTMNSSDRALLNAIREINSM 117
++ L+T I DA + K+Q R RT ++ +R L A+ EI+ M
Sbjct: 88 MHDKGLTTSIDWKNQDAYGRSISSDKRSQMRRLRKWQERIRTKDAGERNLQFALSEIDRM 147
Query: 118 ADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVS 177
A + + +++ + A ++++ D ++GRS + +A++ LY ACR EG+PR+ +E+ VS
Sbjct: 148 ASSLAIPRSVREVACVIYRRALDEDLIRGRSIEGVATSTLYAACRMEGIPRSLEEVATVS 207
Query: 178 KISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDI 237
++ +KEIGR ++ + + L + + ++ RFCS+L L V A I E +
Sbjct: 208 RVERKEIGRTYRYVAQELGLEMAPVDPKKYVPRFCSDLELSEEVTAKANEIIDTTTEKGL 267
Query: 238 VPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
+ G+SP AAAAIY AS ++K++Q+E+ D+A V EVTIR Y+
Sbjct: 268 LSGKSPTGYAAAAIYAASLLCNEKKTQREVADVAQVTEVTIRNRYQ 313
>gi|448330751|ref|ZP_21520030.1| Transcription factor TFIIB cyclin-related protein [Natrinema
versiforme JCM 10478]
gi|445611255|gb|ELY65015.1| Transcription factor TFIIB cyclin-related protein [Natrinema
versiforme JCM 10478]
Length = 321
Score = 161 bits (407), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 97/286 (33%), Positives = 157/286 (54%), Gaps = 11/286 (3%)
Query: 8 CYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPL 67
C E L++ G+ +C +CGL+V ID G EWR F N + SRVG P
Sbjct: 27 CDECDGGTLVKSEDQGELVCDQCGLIVEGTNIDHGPEWRAF-NHSERQNKSRVGAPTTQT 85
Query: 68 LNGSDLSTMIGPGRGDASFDGFG---------MSKYQNR-RTMNSSDRALLNAIREINSM 117
++ L+T I DA + K+Q R RT ++ +R L A+ E + M
Sbjct: 86 MHDKGLTTSIDWKNQDAYGRSISSDKRNQMRRLRKWQERIRTKDAGERNLQFALSETDRM 145
Query: 118 ADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVS 177
A + + +++ + A ++++ D ++GRS + +A++ LY ACR EG+PR+ +E+ AVS
Sbjct: 146 ASSLAIPRSVREVACVIYRRALDEDLIRGRSIEGVATSTLYAACRMEGIPRSLEEVAAVS 205
Query: 178 KISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDI 237
++ +KEIGR ++ + + L ++ + ++ RFCS L L VQ A I E +
Sbjct: 206 RVERKEIGRTYRYVAQELNLEMEPVNPKKYVPRFCSELELSEEVQVKANEIIDVTTEKGL 265
Query: 238 VPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
+ G+SP AAAAIY AS ++K++Q+E+ D+A V EVTIR Y+
Sbjct: 266 LSGKSPTGYAAAAIYAASLLCNEKKTQREVSDVAQVTEVTIRNRYQ 311
>gi|385803088|ref|YP_005839488.1| transcription initiation factor TFB [Haloquadratum walsbyi C23]
gi|339728580|emb|CCC39735.1| transcription initiation factor TFB [Haloquadratum walsbyi C23]
Length = 346
Score = 161 bits (407), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 102/297 (34%), Positives = 160/297 (53%), Gaps = 11/297 (3%)
Query: 6 VCCYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPEN 65
V C E LI D G+ +C++CGLVV + ID G EWR F + + SRVG P
Sbjct: 48 VRCPECESTQLITDDERGETVCADCGLVVDEDSIDRGPEWRAFDSAERD-QKSRVGAPTT 106
Query: 66 PLLNGSDLSTMIGPGRGDA---SFDGFGMSKYQNRRTMN-------SSDRALLNAIREIN 115
L++ LST IG DA S K Q RT N S +R L A+ E++
Sbjct: 107 NLMHDKGLSTNIGWQDKDAYGNSLSSTQRQKMQRLRTWNERFRTRDSKERNLKQALGEVD 166
Query: 116 SMADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICA 175
MA + L + + + A+ ++++ D + L GRS + +A+A LY A RQ G PR+ EI
Sbjct: 167 RMASALGLPENVRETASVIYRRALDEELLPGRSIEGVATASLYAAARQAGTPRSLDEITN 226
Query: 176 VSKISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVEL 235
VS++ + EI R ++ +++ L+ + ++ RF S+L L + ++ A + R A E
Sbjct: 227 VSRVGRDEIARTYRYVVRELKLQIKPADPEQYVPRFASDLDLSDEAERRARQLLRSAKEQ 286
Query: 236 DIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKL 292
+ G+SP+ +AAAA+Y AS ++K +QKE+ +A ++EVTIR Y + +L
Sbjct: 287 GVHSGKSPVGLAAAAVYAASLLINEKVTQKEVSSVANISEVTIRNRYHELLEAEEQL 343
>gi|161528132|ref|YP_001581958.1| transcription factor TFIIB cyclin-related protein [Nitrosopumilus
maritimus SCM1]
gi|160339433|gb|ABX12520.1| Transcription factor TFIIB cyclin-related [Nitrosopumilus maritimus
SCM1]
Length = 302
Score = 161 bits (407), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 89/278 (32%), Positives = 152/278 (54%), Gaps = 12/278 (4%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLST 75
L+ D G+ C CG V+ ++V + G EWR+FSNE G + SR G P + ++ L+T
Sbjct: 19 LVTDPNTGENFCGACGFVITEKVEESGPEWRSFSNE--GENKSRAGVPTSLAMHDMGLAT 76
Query: 76 MIGPGRGDAS---FDGFGMSKYQNRRTMNSS-------DRALLNAIREINSMADRINLTK 125
+I P DA+ S + RT +S DR A E++ + D++ +
Sbjct: 77 VINPQNRDATGKPLTASMKSTIERLRTWDSRSQVHEPVDRNFRQAFSELDRLKDKLAVGD 136
Query: 126 TIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIG 185
++++A ++++ + ++GRS A+ ++ LY ACR PRT K+I S I +K+I
Sbjct: 137 AVIEKAAYIYRKALEKGLVRGRSISALIASALYAACRDTETPRTLKDIGQASNIKRKDIA 196
Query: 186 RCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPIS 245
RC++L+L+ L + ++ +SR S L ++ AT I + A E I G+ P+
Sbjct: 197 RCYRLLLRELNLKMPVVDPIKCISRIASKAGLSEKTKRKATKILQTAEENKISAGKDPMG 256
Query: 246 VAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
+AAAA+Y+A + + ++Q+++ + AGV EVTIR YK
Sbjct: 257 LAAAALYVACVTNGENKTQRDVAEAAGVTEVTIRNRYK 294
Score = 43.9 bits (102), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 45/78 (57%)
Query: 208 MSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEI 267
+ R L++ + V + A +I RKA+E +V GRS ++ A+A+Y A + + R+ K+I
Sbjct: 125 LDRLKDKLAVGDAVIEKAAYIYRKALEKGLVRGRSISALIASALYAACRDTETPRTLKDI 184
Query: 268 GDIAGVAEVTIRQSYKLM 285
G + + I + Y+L+
Sbjct: 185 GQASNIKRKDIARCYRLL 202
>gi|433592681|ref|YP_007282177.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natrinema pellirubrum DSM
15624]
gi|448335120|ref|ZP_21524272.1| Transcription factor TFIIB cyclin-related protein [Natrinema
pellirubrum DSM 15624]
gi|433307461|gb|AGB33273.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natrinema pellirubrum DSM
15624]
gi|445618056|gb|ELY71640.1| Transcription factor TFIIB cyclin-related protein [Natrinema
pellirubrum DSM 15624]
Length = 321
Score = 161 bits (407), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 98/286 (34%), Positives = 157/286 (54%), Gaps = 11/286 (3%)
Query: 8 CYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPL 67
C E L++ G+ +C +CGL+V ID G EWR F N + SRVG P
Sbjct: 27 CDECDGGTLVKSEDQGELVCDQCGLIVEGSNIDHGPEWRAF-NHSERQNKSRVGAPTTQT 85
Query: 68 LNGSDLSTMIGPGRGDASFDGFG---------MSKYQNR-RTMNSSDRALLNAIREINSM 117
++ L+T I DA + K+Q R RT ++ +R L A+ E + M
Sbjct: 86 MHDKGLTTAIDWKNQDAYGRSISSDKRSQMRRLRKWQERIRTKDAGERNLQFALSETDRM 145
Query: 118 ADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVS 177
A + + +++ + A ++++ D ++GRS + +A++ LY ACR EG+PR+ +E+ AVS
Sbjct: 146 ASSLAIPRSVREVACVIYRRALDEDLIRGRSIEGVATSTLYAACRMEGIPRSLEEVAAVS 205
Query: 178 KISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDI 237
++ +KEIGR ++ I + L ++ + ++ RFCS L L VQ A I E +
Sbjct: 206 RVERKEIGRTYRYIAQELGLEMEPVNPKKYVPRFCSELELSEEVQVKANEIIDVTTEKGL 265
Query: 238 VPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
+ G+SP AAAAIY AS ++K++Q+E+ D+A V EVTIR Y+
Sbjct: 266 LSGKSPTGYAAAAIYAASLLCNEKKTQREVSDVAQVTEVTIRNRYQ 311
>gi|448384057|ref|ZP_21563055.1| Transcription factor TFIIB cyclin-related protein [Haloterrigena
thermotolerans DSM 11522]
gi|445659046|gb|ELZ11858.1| Transcription factor TFIIB cyclin-related protein [Haloterrigena
thermotolerans DSM 11522]
Length = 321
Score = 161 bits (407), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 98/286 (34%), Positives = 157/286 (54%), Gaps = 11/286 (3%)
Query: 8 CYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPL 67
C E L++ G+ +C +CGL+V ID G EWR F N + SRVG P
Sbjct: 27 CDECDGGTLVKSEDQGELVCDQCGLIVEGSNIDHGPEWRAF-NHSERQNKSRVGAPTTQT 85
Query: 68 LNGSDLSTMIGPGRGDASFDGFG---------MSKYQNR-RTMNSSDRALLNAIREINSM 117
++ L+T I DA + K+Q R RT ++ +R L A+ E + M
Sbjct: 86 MHDKGLTTAIDWKNQDAYGRSISSDKRSQMRRLRKWQERIRTKDAGERNLQFALSETDRM 145
Query: 118 ADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVS 177
A + + +++ + A ++++ D ++GRS + +A++ LY ACR EG+PR+ +E+ AVS
Sbjct: 146 ASSLAIPRSVREVACVIYRRALDEDLIRGRSIEGVATSTLYAACRMEGIPRSLEEVAAVS 205
Query: 178 KISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDI 237
++ +KEIGR ++ I + L ++ + ++ RFCS L L VQ A I E +
Sbjct: 206 RVERKEIGRTYRYIAQELGLEMEPVNPKKYVPRFCSELELSEEVQVKANEIIDVTTEKGL 265
Query: 238 VPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
+ G+SP AAAAIY AS ++K++Q+E+ D+A V EVTIR Y+
Sbjct: 266 LSGKSPTGYAAAAIYAASLLCNEKKTQREVSDVAQVTEVTIRNRYQ 311
>gi|322369392|ref|ZP_08043957.1| transcription initiation factor TFB [Haladaptatus paucihalophilus
DX253]
gi|320551124|gb|EFW92773.1| transcription initiation factor TFB [Haladaptatus paucihalophilus
DX253]
Length = 287
Score = 160 bits (406), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 95/268 (35%), Positives = 152/268 (56%), Gaps = 11/268 (4%)
Query: 26 ICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLSTMIGPGRGDAS 85
+C +CGLVV + ID G EWR F N + SRVG P ++ L+T I DA
Sbjct: 11 VCDDCGLVVEEERIDPGPEWRAF-NHQERQQKSRVGAPTTQTMHDKGLTTTIDWKDKDAY 69
Query: 86 FDGFG---------MSKYQNR-RTMNSSDRALLNAIREINSMADRINLTKTIVDRANNLF 135
+ K+Q R RT ++ +R L A+ EI+ MA + + +++ + A+ ++
Sbjct: 70 GRSISSKKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDRMASALGVPRSVREVASVIY 129
Query: 136 KQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGRCFKLILKAL 195
++ ++GRS + +A++ LY ACR+EG+PR+ +EI VS++ +KEIGR ++ I + L
Sbjct: 130 RRALKEDLIRGRSIEGVATSALYAACRKEGIPRSLEEISEVSRVERKEIGRTYRYISQEL 189
Query: 196 ETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMAS 255
+ + ++ RFCS L L VQ A +I E ++ G+SP AAAAIY AS
Sbjct: 190 GLEMKPVDPKKYVPRFCSELELSEEVQSKANNIIETTAEEGLLSGKSPTGYAAAAIYAAS 249
Query: 256 QASSDKRSQKEIGDIAGVAEVTIRQSYK 283
++K++Q+E+ D+A V EVTIR Y+
Sbjct: 250 LLCNEKKTQREVADVAQVTEVTIRNRYQ 277
>gi|16120252|ref|NP_395840.1| transcription initiation factor IIB [Halobacterium sp. NRC-1]
gi|169237618|ref|YP_001690821.1| transcription initiation factor TFB [Halobacterium salinarum R1]
gi|14195241|sp|Q9HHK5.1|TF2B3_HALSA RecName: Full=Transcription initiation factor IIB 3; Short=TFIIB 3
gi|10584386|gb|AAG20975.1| transcription initiation factor IIB [Halobacterium sp. NRC-1]
gi|167728395|emb|CAP15204.1| transcription initiation factor TFB [Halobacterium salinarum R1]
Length = 317
Score = 160 bits (406), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 101/286 (35%), Positives = 161/286 (56%), Gaps = 13/286 (4%)
Query: 8 CYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPL 67
C E A +I D +++C +CGLV+ D ID G EWR F N SRVG P
Sbjct: 25 CPECNSANVITD--QSERVCEDCGLVLEDDQIDHGPEWRAF-NSSERDQKSRVGAPTTKT 81
Query: 68 LNGSDLSTMIGPGRGDA---SFDGFG------MSKYQNR-RTMNSSDRALLNAIREINSM 117
++ L+T I DA S D + K+Q R RT ++ +R L A+ EI+ M
Sbjct: 82 MHDKGLTTQIDWKDKDAYGRSLDAKKRNQMNRLRKWQERIRTKDAGERNLQFALSEIDRM 141
Query: 118 ADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVS 177
A + + +++ + A+ ++++ ++GRS + +A+ACLY ACRQEG+PRT +E+ V+
Sbjct: 142 ASALGVPRSVREVASVIYRRALKEDLIRGRSIEGVATACLYAACRQEGIPRTLEEVTEVA 201
Query: 178 KISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDI 237
+I +KEIGR ++ + + L + +++ RF S+L L V A I + E +
Sbjct: 202 RIDQKEIGRTYRYVAQELSLEIQPTDPKEYLPRFASDLELSEEVIAKAREIIDTSAEQGL 261
Query: 238 VPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
+ G+SP AAAAIY AS ++K++Q+E+ ++A V EVTIR Y+
Sbjct: 262 LSGKSPSGFAAAAIYAASLLCNEKKTQREVANVANVTEVTIRNRYQ 307
>gi|407465174|ref|YP_006776056.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus sp. AR2]
gi|407048362|gb|AFS83114.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus sp. AR2]
Length = 315
Score = 160 bits (406), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 82/278 (29%), Positives = 159/278 (57%), Gaps = 11/278 (3%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLST 75
++ D G++ C +CG V+ + + D G EWR+FS E G DP+R G P + ++ L+T
Sbjct: 24 MLTDNVTGERFCGKCGYVITETLQDSGPEWRSFSKE-GGADPTRTGAPTSLAMHDRGLAT 82
Query: 76 MIGPGRGDASFDGFG---------MSKYQNRRTMN-SSDRALLNAIREINSMADRINLTK 125
+I P D+S + + +R +N SSD+ L A+ E++++ D+++L+
Sbjct: 83 IISPMNKDSSGKPLTSTMKSTIERLRTWDSRSKVNASSDKNLRQALSELSTLKDKLSLSD 142
Query: 126 TIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIG 185
++++A+ ++++ + +KGRS A+ +A LY ACR PRT K++ I KK+I
Sbjct: 143 AVIEKASYIYRKALEKGLVKGRSISALIAASLYAACRDTETPRTLKDVSDAGNIKKKDIS 202
Query: 186 RCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPIS 245
RC++++ + LE + ++ ++R S++ + ++ A + + A + G+ P+
Sbjct: 203 RCYRILHQELELKMPVVDPVQCVARIASSIGITEKTKRYAVKVLKDAQAHEESAGKDPMG 262
Query: 246 VAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
+AAAA+Y++ + + ++Q++I + A V EVTIR YK
Sbjct: 263 LAAAALYLSCVKNGEDKTQRDIAEAANVTEVTIRNRYK 300
Score = 47.0 bits (110), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 48/87 (55%)
Query: 208 MSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEI 267
+S LSL + V + A++I RKA+E +V GRS ++ AA++Y A + + R+ K++
Sbjct: 131 LSTLKDKLSLSDAVIEKASYIYRKALEKGLVKGRSISALIAASLYAACRDTETPRTLKDV 190
Query: 268 GDIAGVAEVTIRQSYKLMYPHASKLFP 294
D + + I + Y++++ P
Sbjct: 191 SDAGNIKKKDISRCYRILHQELELKMP 217
>gi|110667646|ref|YP_657457.1| transcription initiation factor TFB [Haloquadratum walsbyi DSM
16790]
gi|109625393|emb|CAJ51817.1| transcription initiation factor TFB [Haloquadratum walsbyi DSM
16790]
Length = 346
Score = 160 bits (406), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 102/297 (34%), Positives = 160/297 (53%), Gaps = 11/297 (3%)
Query: 6 VCCYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPEN 65
V C E LI D G+ +C++CGLVV + ID G EWR F + + SRVG P
Sbjct: 48 VRCPECESTQLITDDERGETVCADCGLVVDEDSIDRGPEWRAFDSAERD-QKSRVGAPTT 106
Query: 66 PLLNGSDLSTMIGPGRGDA---SFDGFGMSKYQNRRTMN-------SSDRALLNAIREIN 115
L++ LST IG DA S K Q RT N S +R L A+ E++
Sbjct: 107 NLMHDKGLSTNIGWQDKDAYGNSLSSTQRQKMQRLRTWNERFRTRDSKERNLKQALGEVD 166
Query: 116 SMADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICA 175
MA + L + + + A+ ++++ D + L GRS + +A+A LY A RQ G PR+ EI
Sbjct: 167 RMASALGLPENVRETASVIYRRALDEELLPGRSIEGVATASLYAAARQAGTPRSLDEITN 226
Query: 176 VSKISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVEL 235
VS++ + EI R ++ +++ L+ + ++ RF S+L L + ++ A + R A E
Sbjct: 227 VSRVGRDEIARTYRYVVRELKLQIKPADPEQYVPRFASDLDLSDEAERRARQLLRSAKEQ 286
Query: 236 DIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKL 292
+ G+SP+ +AAAA+Y AS ++K +QKE+ +A ++EVTIR Y + +L
Sbjct: 287 GVHSGKSPVGLAAAAVYAASLLINEKVTQKEVSSVANISEVTIRNRYHELLEAEEQL 343
>gi|448370421|ref|ZP_21556593.1| Transcription factor TFIIB cyclin-related protein [Natrialba
aegyptia DSM 13077]
gi|445649168|gb|ELZ02110.1| Transcription factor TFIIB cyclin-related protein [Natrialba
aegyptia DSM 13077]
Length = 323
Score = 160 bits (406), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 94/267 (35%), Positives = 150/267 (56%), Gaps = 11/267 (4%)
Query: 27 CSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLSTMIGPGRGDASF 86
C CGL++ + VID G EWR F N SRVG P ++ L+T I DA
Sbjct: 48 CEACGLIIEEEVIDRGPEWRAF-NAAERDSKSRVGAPTTQTMHDKGLTTTIDWKNKDAYG 106
Query: 87 DGFG---------MSKYQNR-RTMNSSDRALLNAIREINSMADRINLTKTIVDRANNLFK 136
+ K+Q R RT ++ +R L A+ E + MA + + +++ + A+ L++
Sbjct: 107 RSLSSDKRSQMNRLRKWQERIRTKDAGERNLQFALSETDRMASALGVPRSVREVASVLYR 166
Query: 137 QVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGRCFKLILKALE 196
+ D ++GRS + +A++ LY ACR EG+PR+ E+ AVS++++ EIGR ++ I + L
Sbjct: 167 RALDEDLIRGRSIEGVATSTLYAACRMEGIPRSLDEVAAVSRVNRMEIGRTYRYISQELG 226
Query: 197 TSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQ 256
++ + ++ RFCS L LP VQ A I E ++ G+SP AAAAIY ++
Sbjct: 227 LEMEPVNPKKYVPRFCSELDLPEEVQAKANEIIDTTAEQGMLSGKSPTGYAAAAIYASAL 286
Query: 257 ASSDKRSQKEIGDIAGVAEVTIRQSYK 283
++K++QKE+ D+A V EVTIR Y+
Sbjct: 287 LCNEKKTQKEVADVAQVTEVTIRNRYQ 313
>gi|156938159|ref|YP_001435955.1| transcription initiation factor IIB [Ignicoccus hospitalis KIN4/I]
gi|189029852|sp|A8AC96.1|TF2B_IGNH4 RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|156567143|gb|ABU82548.1| Transcription initiation factor IIB (TFIIB) [Ignicoccus hospitalis
KIN4/I]
Length = 316
Score = 160 bits (405), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 93/271 (34%), Positives = 144/271 (53%), Gaps = 11/271 (4%)
Query: 23 GDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLSTMIGPGRG 82
G+ +C+ CG +V DR +D G EWR F+ E+ R G P +P L+ LST+I
Sbjct: 26 GEYVCARCGTIVLDRYVDQGPEWRAFTPEERE-RRGRTGAPLSPTLHDHGLSTVIDHRDR 84
Query: 83 DASFDGFG---------MSKYQNR-RTMNSSDRALLNAIREINSMADRINLTKTIVDRAN 132
DA + K+Q R R DR L A+ E++ MA+ +NL K I + A
Sbjct: 85 DALGKRLSPRKRQEVQRLRKWQLRARIQTGMDRNLTIAMNELDRMANLLNLPKQIKEEAA 144
Query: 133 NLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGRCFKLIL 192
++++ + ++GRS +++ +A +Y ACR PRT EI ++++KE+ RC++LI
Sbjct: 145 VIYRKAVEKGLVRGRSIESVVAAVIYAACRIHHQPRTLDEIAKKLEVNRKEVARCYRLIT 204
Query: 193 KALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIY 252
K L+ V + D + R L L + + A I K I G+ P +AAA IY
Sbjct: 205 KELKLKVPIADAMDHIPRIGEALKLRGDIIEYAMKIMEKIKGHPITAGKDPAGIAAAVIY 264
Query: 253 MASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
+A ++R+QKEI ++AGV EVT+R YK
Sbjct: 265 IAVMQKGERRTQKEIANVAGVTEVTVRNRYK 295
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 62/127 (48%), Gaps = 4/127 (3%)
Query: 180 SKKEIGRCFKLILKA-LETSVD--LITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELD 236
++E+ R K L+A ++T +D L + + R + L+LP +++ A I RKAVE
Sbjct: 95 KRQEVQRLRKWQLRARIQTGMDRNLTIAMNELDRMANLLNLPKQIKEEAAVIYRKAVEKG 154
Query: 237 IVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKLFP-Q 295
+V GRS SV AA IY A + R+ EI V + + Y+L+ P
Sbjct: 155 LVRGRSIESVVAAVIYAACRIHHQPRTLDEIAKKLEVNRKEVARCYRLITKELKLKVPIA 214
Query: 296 DFVFHTP 302
D + H P
Sbjct: 215 DAMDHIP 221
Score = 40.0 bits (92), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 47/89 (52%)
Query: 107 LLNAIREINSMADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGV 166
+ +A+ I + + + L I++ A + +++ G+ IA+A +YIA Q+G
Sbjct: 213 IADAMDHIPRIGEALKLRGDIIEYAMKIMEKIKGHPITAGKDPAGIAAAVIYIAVMQKGE 272
Query: 167 PRTFKEICAVSKISKKEIGRCFKLILKAL 195
RT KEI V+ +++ + +K I+K L
Sbjct: 273 RRTQKEIANVAGVTEVTVRNRYKEIMKVL 301
>gi|448411716|ref|ZP_21576072.1| transcription factor TFIIB cyclin-related protein [Halosimplex
carlsbadense 2-9-1]
gi|445669650|gb|ELZ22258.1| transcription factor TFIIB cyclin-related protein [Halosimplex
carlsbadense 2-9-1]
Length = 324
Score = 160 bits (405), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 101/278 (36%), Positives = 157/278 (56%), Gaps = 13/278 (4%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTF-SNEKSGVDPSRVGGPENPLLNGSDLS 74
L D G+ +C ECGLVV + ID G EWR F ++EK + SRVG P +++ LS
Sbjct: 36 LASDAEHGETVCEECGLVVEEDEIDPGPEWRAFDASEKD--EKSRVGAPTTNMMHDKGLS 93
Query: 75 TMIGPGRGDA---SFDGFGMSKYQNRRTMN-------SSDRALLNAIREINSMADRINLT 124
T IG DA S K Q RT N S +R L A+ EI+ MA + L
Sbjct: 94 TNIGWQDKDAYGNSLSSRQREKMQRLRTWNERFRTRDSKERNLKQALGEIDRMASALGLP 153
Query: 125 KTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEI 184
+++ + A+ ++++ D L GRS + +A++ LY A RQ G PR+ EI AVS++ K EI
Sbjct: 154 ESVRETASVIYRRALDEDLLPGRSIEGVATSALYAAARQAGTPRSLDEIAAVSRVGKDEI 213
Query: 185 GRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPI 244
R ++ +++ L + ++ RF S+L LP+ V++ A + A E + G+SP+
Sbjct: 214 ARTYRYVVRELSLEIQPADPESYVPRFVSDLDLPDEVERRARQLLGTAKEQGVHSGKSPV 273
Query: 245 SVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSY 282
+AAAA+Y AS +++K +Q E+ ++A ++EVTIR Y
Sbjct: 274 GLAAAAVYAASLLANEKVTQSEVSEVANISEVTIRNRY 311
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 55/96 (57%), Gaps = 1/96 (1%)
Query: 208 MSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEI 267
+ R S L LP V++ A+ I R+A++ D++PGRS VA +A+Y A++ + RS EI
Sbjct: 143 IDRMASALGLPESVRETASVIYRRALDEDLLPGRSIEGVATSALYAAARQAGTPRSLDEI 202
Query: 268 GDIAGVAEVTIRQSYKLMYPHAS-KLFPQDFVFHTP 302
++ V + I ++Y+ + S ++ P D + P
Sbjct: 203 AAVSRVGKDEIARTYRYVVRELSLEIQPADPESYVP 238
>gi|399578525|ref|ZP_10772272.1| transcription initiation factor IIB [Halogranum salarium B-1]
gi|399236411|gb|EJN57348.1| transcription initiation factor IIB [Halogranum salarium B-1]
Length = 319
Score = 160 bits (405), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 96/287 (33%), Positives = 159/287 (55%), Gaps = 15/287 (5%)
Query: 8 CYEHPDAPLIEDYRAGDQI-CSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENP 66
C E +++D GD++ C +CGLV+ ++ ID G EWR F N SRVG P
Sbjct: 28 CPECESDAIVQD---GDELLCEDCGLVLDEQAIDHGPEWRAF-NATERDSKSRVGAPTTQ 83
Query: 67 LLNGSDLSTMIGPGRGDASFDGFGMSK---------YQNR-RTMNSSDRALLNAIREINS 116
++ L+T I DA + K +Q R RT ++ +R L A+ E++
Sbjct: 84 TMHDKGLTTQIDWKNKDAYGNSLSSKKRKQMSRLRTWQERVRTKDAGERNLQFALSEMDR 143
Query: 117 MADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAV 176
MA + + ++ + A+ ++++ + ++GRS + +A+ CLY ACRQEG+PR+ E+ V
Sbjct: 144 MASALGVPRSTREVASVIYRRALNEDLIRGRSIEGVATGCLYAACRQEGIPRSLDEVADV 203
Query: 177 SKISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELD 236
S++ +EIGR ++ + K L + + +F+ RF S L +P V++ A I + E
Sbjct: 204 SRVPYQEIGRTYRYVAKELSLEMRPVDPKEFVPRFASELDVPEEVEQKANEIIDTSAEAG 263
Query: 237 IVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
++ G+SP AAAA+Y A + KR+Q+E+ D+A V EVTIR Y+
Sbjct: 264 LLSGKSPTGFAAAALYAAGLLCNKKRTQREVADVAQVTEVTIRNRYQ 310
>gi|448396803|ref|ZP_21569251.1| Transcription factor TFIIB cyclin-related protein [Haloterrigena
limicola JCM 13563]
gi|445673332|gb|ELZ25893.1| Transcription factor TFIIB cyclin-related protein [Haloterrigena
limicola JCM 13563]
Length = 321
Score = 160 bits (405), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 96/286 (33%), Positives = 156/286 (54%), Gaps = 11/286 (3%)
Query: 8 CYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPL 67
C E L++ G+ +C +CGL+V ID G EWR F N + SRVG P
Sbjct: 27 CDECGGGTLVKSEDQGELVCDQCGLIVEGTNIDHGPEWRAF-NHSERQNKSRVGAPTTQT 85
Query: 68 LNGSDLSTMIGPGRGDASFDGFG---------MSKYQNR-RTMNSSDRALLNAIREINSM 117
++ L+T I DA + K+Q R RT ++ +R L A+ E + M
Sbjct: 86 MHDKGLTTSIDWKNQDAYGRSLSSDKRNQMRRLRKWQERIRTKDAGERNLQFALSETDRM 145
Query: 118 ADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVS 177
A + + +++ + A ++++ D ++GRS + +A++ LY ACR EG+PR+ +E+ VS
Sbjct: 146 ASSLGIPRSVREVACVMYRRALDEDLIRGRSIEGVATSTLYAACRMEGIPRSLEEVSGVS 205
Query: 178 KISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDI 237
++ +KEIGR ++ + + L ++ + ++ RFCS L L VQ A I E +
Sbjct: 206 RVERKEIGRTYRYVAQELGLEMEPVNPKKYVPRFCSELELSEEVQAKANEIIDTTTEKGL 265
Query: 238 VPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
+ G+SP AAAAIY AS ++K++Q+E+ D+A V EVTIR Y+
Sbjct: 266 LSGKSPTGYAAAAIYAASLLCNEKKTQREVSDVAQVTEVTIRNRYQ 311
>gi|15920551|ref|NP_376220.1| transcription initiation factor IIB [Sulfolobus tokodaii str. 7]
gi|21363017|sp|Q975S1.1|TF2B_SULTO RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|15621334|dbj|BAB65329.1| transcription initiation factor IIB 1 [Sulfolobus tokodaii str. 7]
Length = 308
Score = 160 bits (405), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 101/282 (35%), Positives = 159/282 (56%), Gaps = 11/282 (3%)
Query: 12 PDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGS 71
P ++ D G+ IC+E G V+ +R ID G EWR F+ E+ SRVGGP N ++
Sbjct: 15 PPDKIVFDEERGEYICTETGEVIEERAIDQGPEWRAFTPEEKE-KRSRVGGPLNQTIHDM 73
Query: 72 DLSTMIGPGRGDA---------SFDGFGMSKYQNR-RTMNSSDRALLNAIREINSMADRI 121
+ST+I DA + K+Q R R +S DR L A+ E+ + + +
Sbjct: 74 GISTVIDWKDKDAMGRTLDPKRRLEVLRWRKWQIRARIQSSIDRNLAQAMNELERIGNLL 133
Query: 122 NLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISK 181
NL K + D A ++++ + ++GRS +++ +A +Y ACR+ + RT EI +K ++
Sbjct: 134 NLPKAVKDEAALIYRKAVEKGLVRGRSIESVVAASIYAACRRMKMARTLDEIAQFTKANR 193
Query: 182 KEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGR 241
KE+ RC++LIL+ L+ +V + D+++R S L L K A I KA E + G+
Sbjct: 194 KEVARCYRLILRELDINVPVSDPKDYVTRIGSLLGLSGSTMKMAIDIIEKAKESGLTAGK 253
Query: 242 SPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
P +AAAAIY+A+ + ++R+QKEI IAGV EVT+R YK
Sbjct: 254 DPAGLAAAAIYIAALLNDERRTQKEIAQIAGVTEVTVRNRYK 295
Score = 46.6 bits (109), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 55/106 (51%), Gaps = 3/106 (2%)
Query: 183 EIGRCFKLILKA-LETSVD--LITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVP 239
E+ R K ++A +++S+D L + + R + L+LP V+ A I RKAVE +V
Sbjct: 98 EVLRWRKWQIRARIQSSIDRNLAQAMNELERIGNLLNLPKAVKDEAALIYRKAVEKGLVR 157
Query: 240 GRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLM 285
GRS SV AA+IY A + R+ EI + + Y+L+
Sbjct: 158 GRSIESVVAASIYAACRRMKMARTLDEIAQFTKANRKEVARCYRLI 203
>gi|448316805|ref|ZP_21506385.1| Transcription factor TFIIB cyclin-related protein [Natronococcus
jeotgali DSM 18795]
gi|445606975|gb|ELY60873.1| Transcription factor TFIIB cyclin-related protein [Natronococcus
jeotgali DSM 18795]
Length = 321
Score = 160 bits (404), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 99/286 (34%), Positives = 158/286 (55%), Gaps = 11/286 (3%)
Query: 8 CYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPL 67
C E L+ + C +CGLV+ + ID G EWR F N+ SRVG P
Sbjct: 27 CPECESTALVRSSDGSEVSCEDCGLVLEEEGIDRGPEWRAF-NQSERDSKSRVGAPTTQT 85
Query: 68 LNGSDLSTMI------GPGRGDASFDGFGMS---KYQNR-RTMNSSDRALLNAIREINSM 117
++ L+T I GR +S MS K+Q R RT ++ +R L A+ E + M
Sbjct: 86 MHDKGLTTTIDWKNKDAYGRSLSSEKRTQMSRLRKWQERIRTKDAGERNLQFALSETDRM 145
Query: 118 ADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVS 177
A + + +++ + A+ L+++ D ++GRS + +A++ LY ACR EG+PR+ E+ AVS
Sbjct: 146 ASALGVPRSVREVASVLYRRALDEDLIRGRSIEGVATSTLYAACRMEGIPRSLDEVAAVS 205
Query: 178 KISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDI 237
++ + EIGR ++ I + L ++ + ++ RFCS L LP VQ A I E +
Sbjct: 206 RVDRMEIGRTYRYISQELGLEMEPVDPKKYVPRFCSELDLPEEVQLKANEIITTTAEQGM 265
Query: 238 VPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
+ G+SP AAAAIY ++ ++K++Q+E+ D+A V EVTIR Y+
Sbjct: 266 LSGKSPTGYAAAAIYASALLCNEKKTQREVADVAQVTEVTIRNRYQ 311
>gi|336254888|ref|YP_004597995.1| transcription initiation factor IIB [Halopiger xanaduensis SH-6]
gi|335338877|gb|AEH38116.1| Transcription initiation factor IIB [Halopiger xanaduensis SH-6]
Length = 323
Score = 160 bits (404), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 94/276 (34%), Positives = 155/276 (56%), Gaps = 14/276 (5%)
Query: 21 RAGDQ---ICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLSTMI 77
R+ DQ +C +CGLVV + ID G EWR F N SRVG P ++ L+T I
Sbjct: 40 RSEDQRELVCDDCGLVVEESNIDRGPEWRAF-NHSERQSKSRVGAPTTQAMHDKGLTTQI 98
Query: 78 GPGRGDASFDGFG---------MSKYQNR-RTMNSSDRALLNAIREINSMADRINLTKTI 127
DA + K+Q R RT ++ +R L +A+ EI+ M+ + + +++
Sbjct: 99 DWKNTDAYGRSLSADKRSQMRRLRKWQERIRTKDAGERNLQSALSEIDRMSSALGIPRSV 158
Query: 128 VDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGRC 187
+ A+ ++++ ++GRS + +A+ CLY ACRQEG+PR+ +E+ VS++ +KEIGR
Sbjct: 159 REVASVVYRRALSEDLIRGRSIEGVATGCLYAACRQEGIPRSLEEVAEVSRVERKEIGRT 218
Query: 188 FKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVA 247
++ + + L + + +++ RFCS L L V I + E ++ G+SP A
Sbjct: 219 YRYVAQELSLELKPVDPQEYVPRFCSELDLSEEVTAKTREIIQVTAEKGLLSGKSPTGYA 278
Query: 248 AAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
AAAIY AS ++K++Q+E+ ++A V EVTIR Y+
Sbjct: 279 AAAIYAASLLCNEKKTQREVAEVAQVTEVTIRNRYQ 314
>gi|448424065|ref|ZP_21582191.1| transcription factor TFIIB cyclin-related protein [Halorubrum
terrestre JCM 10247]
gi|448448397|ref|ZP_21591210.1| transcription factor TFIIB cyclin-related protein [Halorubrum
litoreum JCM 13561]
gi|448478955|ref|ZP_21603961.1| transcription factor TFIIB cyclin-related protein [Halorubrum arcis
JCM 13916]
gi|448491995|ref|ZP_21608663.1| transcription factor TFIIB cyclin-related protein [Halorubrum
californiensis DSM 19288]
gi|448512210|ref|ZP_21616324.1| transcription factor TFIIB cyclin-related protein [Halorubrum
distributum JCM 9100]
gi|448520833|ref|ZP_21618166.1| transcription factor TFIIB cyclin-related protein [Halorubrum
distributum JCM 10118]
gi|445682730|gb|ELZ35143.1| transcription factor TFIIB cyclin-related protein [Halorubrum
terrestre JCM 10247]
gi|445692213|gb|ELZ44394.1| transcription factor TFIIB cyclin-related protein [Halorubrum
californiensis DSM 19288]
gi|445694530|gb|ELZ46655.1| transcription factor TFIIB cyclin-related protein [Halorubrum
distributum JCM 9100]
gi|445702969|gb|ELZ54908.1| transcription factor TFIIB cyclin-related protein [Halorubrum
distributum JCM 10118]
gi|445814813|gb|EMA64771.1| transcription factor TFIIB cyclin-related protein [Halorubrum
litoreum JCM 13561]
gi|445822785|gb|EMA72547.1| transcription factor TFIIB cyclin-related protein [Halorubrum arcis
JCM 13916]
Length = 317
Score = 160 bits (404), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 97/269 (36%), Positives = 156/269 (57%), Gaps = 13/269 (4%)
Query: 26 ICSECGLVVGDRVIDVGSEWRTFS-NEKSGVDPSRVGGPENPLLNGSDLSTMIGPGRGDA 84
+C +CGLV+ +R ID G EWR F+ NE+ SRVG P ++ L+T I DA
Sbjct: 42 VCEDCGLVLDERNIDRGPEWRAFNHNERQS--KSRVGAPITETMHDKGLTTTIDWKDKDA 99
Query: 85 SFDGFG---------MSKYQNR-RTMNSSDRALLNAIREINSMADRINLTKTIVDRANNL 134
+ K+Q R RT ++ +R L A+ EI+ MA + + +++ + A+ +
Sbjct: 100 YGRSLSSEKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDRMASALGVPRSVREVASVI 159
Query: 135 FKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGRCFKLILKA 194
+++ + ++GRS + +++A LY ACRQEG+PR+ E+ VS++ +KEIGR ++ I +
Sbjct: 160 YRRALNEDLIRGRSIEGVSTAALYAACRQEGIPRSLDEVADVSRVPQKEIGRTYRYISQE 219
Query: 195 LETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMA 254
L + + F+ RF S+L L VQ AT I + E ++ G+SP AAAAIY A
Sbjct: 220 LGLELKPVDPKQFVPRFASSLQLSEEVQSKATEIIDVSAEQGLLSGKSPTGFAAAAIYAA 279
Query: 255 SQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
S ++K++Q+E+ D+A V EVTIR Y+
Sbjct: 280 SLLCNEKKTQREVADVAQVTEVTIRNRYQ 308
>gi|167044633|gb|ABZ09305.1| putative transcription factor TFIIB repeat [uncultured marine
crenarchaeote HF4000_APKG7F19]
Length = 300
Score = 160 bits (404), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 96/287 (33%), Positives = 158/287 (55%), Gaps = 12/287 (4%)
Query: 3 INKVCCYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGG 62
I K C A +I D G+ CS CG V+ +++I+ G EWR+FSN+ G D SRVG
Sbjct: 6 ITKQRCPSCTKAKMILDNNTGELFCSFCGFVMPEKLIEGGPEWRSFSND--GTDRSRVGA 63
Query: 63 PENPLLNGSDLSTMIGPGRGDAS---FDGFGMSKYQNRRTMNS-------SDRALLNAIR 112
+ ++ LST+IG DA+ D + RT +S ++R L A+
Sbjct: 64 GTSITIHDMGLSTIIGQQNKDATGKPLDSSMKKSIERLRTWDSRSQAHSSAERNLRQALS 123
Query: 113 EINSMADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKE 172
E++ M +++LT ++++A ++++ + K +KGRS + +AC+Y +CR RT +
Sbjct: 124 EMDKMKAKLSLTDPVIEKAAYIYRKAIERKLVKGRSIHGLVAACIYASCRNTETSRTLDD 183
Query: 173 ICAVSKISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKA 232
I I +K++ RC++LI + L+ + + +SR S L ++ A +I KA
Sbjct: 184 IANGINIRRKDVARCYRLIFRELDLKIPVPDPVKGVSRIASIAGLGEKTKRKAINILNKA 243
Query: 233 VELDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIR 279
+L IV G+ P+ +AAAA+Y+A +S ++QKEI +GV EVTIR
Sbjct: 244 KKLGIVAGKDPMGIAAAALYLACISSGGSKTQKEISIASGVTEVTIR 290
Score = 41.6 bits (96), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 43/79 (54%)
Query: 208 MSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEI 267
M + + LSL + V + A +I RKA+E +V GRS + AA IY + + + R+ +I
Sbjct: 125 MDKMKAKLSLTDPVIEKAAYIYRKAIERKLVKGRSIHGLVAACIYASCRNTETSRTLDDI 184
Query: 268 GDIAGVAEVTIRQSYKLMY 286
+ + + + Y+L++
Sbjct: 185 ANGINIRRKDVARCYRLIF 203
>gi|325187852|emb|CCA22395.1| transcription initiation factor IIB putative [Albugo laibachii
Nc14]
Length = 303
Score = 159 bits (403), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 91/290 (31%), Positives = 158/290 (54%), Gaps = 4/290 (1%)
Query: 8 CYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDP---SRVGGPE 64
C + ++ DY AGD +C CG+V+G+R++D EWRTFSN+ G D SRVG E
Sbjct: 8 CVDCGSDDIVTDYGAGDVVCRSCGIVLGERIVDDTPEWRTFSNDDRGGDATSKSRVGQVE 67
Query: 65 NPLLNGSDLSTMIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADRINLT 124
+ + + L+T++ + + + ++ R + N I +++ ++L
Sbjct: 68 DQGIEDATLTTVLVDSTSEKNNGKAQTAMLPKLNKESAHVRRMQNMTNRIREISETLSLP 127
Query: 125 KTIVDRANNLFKQVH-DGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKE 183
K I++ A ++++ G ++G +++A+A ++IACRQ G RT KE+ S + KK+
Sbjct: 128 KIILEVAMQVYQEAERKGTLMRGPEKESMAAAVIFIACRQAGHARTLKELEGASGVMKKK 187
Query: 184 IGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSP 243
IG+ F ++ K L TT +++ RFCS L LP Q A +A+KA L + G+SP
Sbjct: 188 IGKSFLILKKQLNFDFRQATTTNYVERFCSRLGLPAKTQVIAHDVAKKAQTLGLTDGKSP 247
Query: 244 ISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKLF 293
++AA+ IY+ + ++ KRS +EI D+ +AE ++ K + LF
Sbjct: 248 TALAASVIYLVAAYTNMKRSIQEISDVTMIAEKNVKTVCKELNKSRLVLF 297
>gi|448528883|ref|ZP_21620263.1| transcription factor TFIIB cyclin-related protein [Halorubrum
hochstenium ATCC 700873]
gi|445710331|gb|ELZ62150.1| transcription factor TFIIB cyclin-related protein [Halorubrum
hochstenium ATCC 700873]
Length = 317
Score = 159 bits (403), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 97/269 (36%), Positives = 156/269 (57%), Gaps = 13/269 (4%)
Query: 26 ICSECGLVVGDRVIDVGSEWRTFS-NEKSGVDPSRVGGPENPLLNGSDLSTMIGPGRGDA 84
+C +CGLV+ +R ID G EWR F+ NE+ SRVG P ++ L+T I DA
Sbjct: 42 VCEDCGLVLDERNIDRGPEWRAFNHNERQS--KSRVGAPITETMHDKGLTTTIDWKDKDA 99
Query: 85 SFDGFG---------MSKYQNR-RTMNSSDRALLNAIREINSMADRINLTKTIVDRANNL 134
+ K+Q R RT ++ +R L A+ EI+ MA + + +++ + A+ +
Sbjct: 100 YGRSLSSEKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDRMASALGVPRSVREVASVI 159
Query: 135 FKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGRCFKLILKA 194
+++ + ++GRS + +++A LY ACRQEG+PR+ E+ VS++ +KEIGR ++ I +
Sbjct: 160 YRRALNEDLIRGRSIEGVSTAALYAACRQEGIPRSLDEVADVSRVPQKEIGRTYRYISQE 219
Query: 195 LETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMA 254
L + + F+ RF S+L L VQ AT I + E ++ G+SP AAAAIY A
Sbjct: 220 LGLELRPVDPKQFVPRFASSLQLSEEVQSKATEIIDVSAEQGLLSGKSPTGFAAAAIYAA 279
Query: 255 SQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
S ++K++Q+E+ D+A V EVTIR Y+
Sbjct: 280 SLLCNEKKTQREVADVAQVTEVTIRNRYQ 308
>gi|448726653|ref|ZP_21709047.1| transcription initiation factor TFB [Halococcus morrhuae DSM 1307]
gi|445793983|gb|EMA44547.1| transcription initiation factor TFB [Halococcus morrhuae DSM 1307]
Length = 305
Score = 159 bits (403), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 95/271 (35%), Positives = 153/271 (56%), Gaps = 11/271 (4%)
Query: 23 GDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLSTMIGPGRG 82
G+ +C +CGLVV + ID G EWR F N SRVG P ++ L+T I
Sbjct: 26 GELVCEDCGLVVEEENIDPGPEWRAF-NHAERQQKSRVGAPTTQTMHDKGLTTTIDWKDK 84
Query: 83 DASFDGFG---------MSKYQNR-RTMNSSDRALLNAIREINSMADRINLTKTIVDRAN 132
DA + K+Q R RT ++ +R L A+ EI+ MA + + +++ + A+
Sbjct: 85 DAYGRSISSKKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDRMASALGVPRSVREVAS 144
Query: 133 NLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGRCFKLIL 192
++++ ++GRS + +A++ LY ACR+EG+PR+ +EI VS++ +KEIGR ++ +
Sbjct: 145 VIYRRSLADDLIRGRSIEGVATSALYAACRKEGIPRSLEEISEVSRVERKEIGRTYRYVS 204
Query: 193 KALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIY 252
+ L + + ++ RFCS L+L VQ A I E ++ G+SP AAAAIY
Sbjct: 205 QELALEMRPVDPKKYVPRFCSELTLSEEVQAKANDIIETTAEEGLLSGKSPTGYAAAAIY 264
Query: 253 MASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
AS ++K++Q+E+ D+A V EVTIR Y+
Sbjct: 265 AASLLCNEKKTQREVADVAQVTEVTIRNRYQ 295
>gi|452206957|ref|YP_007487079.1| transcription initiation factor TFB [Natronomonas moolapensis
8.8.11]
gi|452083057|emb|CCQ36340.1| transcription initiation factor TFB [Natronomonas moolapensis
8.8.11]
Length = 318
Score = 159 bits (403), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 92/272 (33%), Positives = 153/272 (56%), Gaps = 11/272 (4%)
Query: 22 AGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLSTMIGPGR 81
G+ +C +CGLV+ + ID G EWR F N SRVG P ++ L+T I
Sbjct: 39 GGELVCEDCGLVIEEENIDRGPEWRAF-NHSERQSKSRVGAPTTQTMHDKGLTTQIDWKD 97
Query: 82 GDASFDGFG---------MSKYQNR-RTMNSSDRALLNAIREINSMADRINLTKTIVDRA 131
DA + K+Q R RT ++ +R L A+ EI+ M+ + + +++ + A
Sbjct: 98 KDAYGRSISSEKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDRMSSALGVPRSVREVA 157
Query: 132 NNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGRCFKLI 191
+ ++++ D ++GRS + +A+A LY ACRQEG+PR+ E+ V+++ +KEIGR ++ I
Sbjct: 158 SVIYRRALDDDLIRGRSIEGVATAALYAACRQEGIPRSLDEVAEVARVEQKEIGRTYRYI 217
Query: 192 LKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAI 251
+ L ++ + ++ RFCS L L V++ I E ++ G+SP AAAAI
Sbjct: 218 AQELSLGLEPVDPVQYVPRFCSELGLSEEVEQKTREIIEVTAEKGMLSGKSPTGYAAAAI 277
Query: 252 YMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
Y AS ++K++Q+E+ ++A V EVTIR Y+
Sbjct: 278 YAASLLCNEKKTQREVAEVAQVTEVTIRNRYQ 309
>gi|71394065|gb|AAZ32104.1| archaeal transcriptional initiation factor TFB [uncultured
euryarchaeote Alv-FOS5]
Length = 474
Score = 159 bits (403), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 97/295 (32%), Positives = 155/295 (52%), Gaps = 25/295 (8%)
Query: 8 CYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSN------EKSGVDPSRVG 61
C E L DY + +C +CG ++ + +ID G EWR F + +++G P +
Sbjct: 177 CPECGSTNLRWDYEKAELVCLDCGAIIEESLIDFGPEWRAFDSYQKAKRQRTG-SPIKYT 235
Query: 62 GPENPL----------LNGSDLSTMIGPGRGDASFDGFGMSKYQNRRTMNSS-DRALLNA 110
P L + GS LS G + K+ R ++ SS +R L A
Sbjct: 236 KPNKGLVTEIDKYNRDIRGSKLSPQAASQMGR-------LRKWHKRSSIASSIERNLTIA 288
Query: 111 IREINSMADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTF 170
+ ++ ++ + L I + A L+++ + ++GR +++ +A +Y+ CRQ G+PRT
Sbjct: 289 MGDLERISSYLGLPSNIREAAALLYRKAVEKGLIRGRLIESVVAAVIYMICRQYGIPRTL 348
Query: 171 KEICAVSKISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIAR 230
EI VS I+KKEIGR ++ + K L V L ++ RF S L L VQ+ A I
Sbjct: 349 DEISEVSGITKKEIGRTYRFLKKELYVDVPLTNPIYYVPRFASALGLSGKVQEKAKEILN 408
Query: 231 KAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLM 285
+AVE ++ GR P VAAAA+Y+AS ++R+QKE+ ++AGV EVTIR Y+ +
Sbjct: 409 EAVEKGLISGRGPTGVAAAAVYIASVMMGERRTQKEVAEVAGVTEVTIRNRYREL 463
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 57/108 (52%), Gaps = 5/108 (4%)
Query: 202 ITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDK 261
I GD + R S L LP+ +++AA + RKAVE ++ GR SV AA IYM +
Sbjct: 287 IAMGD-LERISSYLGLPSNIREAAALLYRKAVEKGLIRGRLIESVVAAVIYMICRQYGIP 345
Query: 262 RSQKEIGDIAGVAEVTIRQSYKLMYPHASKLFPQDFVFHTPIHELPQL 309
R+ EI +++G+ + I ++Y+ + K D PI+ +P+
Sbjct: 346 RTLDEISEVSGITKKEIGRTYRFL----KKELYVDVPLTNPIYYVPRF 389
Score = 38.9 bits (89), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 46/97 (47%)
Query: 104 DRALLNAIREINSMADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQ 163
D L N I + A + L+ + ++A + + + + GR +A+A +YIA
Sbjct: 376 DVPLTNPIYYVPRFASALGLSGKVQEKAKEILNEAVEKGLISGRGPTGVAAAAVYIASVM 435
Query: 164 EGVPRTFKEICAVSKISKKEIGRCFKLILKALETSVD 200
G RT KE+ V+ +++ I ++ + + L +D
Sbjct: 436 MGERRTQKEVAEVAGVTEVTIRNRYRELKRELNIDID 472
>gi|448470225|ref|ZP_21600422.1| transcription factor TFIIB cyclin-related protein [Halorubrum
kocurii JCM 14978]
gi|445808303|gb|EMA58375.1| transcription factor TFIIB cyclin-related protein [Halorubrum
kocurii JCM 14978]
Length = 317
Score = 159 bits (402), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 102/290 (35%), Positives = 160/290 (55%), Gaps = 16/290 (5%)
Query: 6 VCCYEHPDAPLIEDYRAGDQ--ICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGP 63
V C E ++ D DQ +C +CGLV+ +R ID G EWR F N SRVG P
Sbjct: 23 VSCPECDSTEIVTD---ADQELVCEDCGLVLDERNIDRGPEWRAF-NHSERQSKSRVGAP 78
Query: 64 ENPLLNGSDLSTMIGPGRGDASFDGFG---------MSKYQNR-RTMNSSDRALLNAIRE 113
++ L+T I DA + K+Q R RT ++ +R L A+ E
Sbjct: 79 ITETMHDKGLTTTIDWKDKDAYGRSLSSEKRSQMHRLRKWQERIRTKDAGERNLQFALSE 138
Query: 114 INSMADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEI 173
I+ MA + + +++ + A+ ++++ + ++GRS + +++A LY ACRQEG+PR+ E+
Sbjct: 139 IDRMASALGVPRSVREVASVIYRRALNEDLIRGRSIEGVSTAALYAACRQEGIPRSLDEV 198
Query: 174 CAVSKISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAV 233
VS++ +KEIGR ++ I + L + + F+ RF S L L VQ AT I +
Sbjct: 199 ADVSRVPQKEIGRTYRYISQELGLELKPVDPKQFVPRFASALQLSEEVQSKATEIIDVSA 258
Query: 234 ELDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
E ++ G+SP AAAAIY AS ++K++Q+E+ D+A V EVTIR Y+
Sbjct: 259 EQGLLSGKSPTGFAAAAIYAASLLCNEKKTQREVADVAQVTEVTIRNRYQ 308
>gi|297527296|ref|YP_003669320.1| Transcription factor TFIIB cyclin-like protein [Staphylothermus
hellenicus DSM 12710]
gi|297256212|gb|ADI32421.1| Transcription factor TFIIB cyclin-related protein [Staphylothermus
hellenicus DSM 12710]
Length = 313
Score = 159 bits (402), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 98/282 (34%), Positives = 161/282 (57%), Gaps = 11/282 (3%)
Query: 12 PDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGS 71
P+ +I D G+ IC G V+ ++VID EWR F+ E+ SR+GGP ++
Sbjct: 20 PEDQIIYDPEMGEYICLLTGEVIEEKVIDDRPEWRAFTPEERE-RRSRIGGPLTSTVHDR 78
Query: 72 DLSTMIGPGRGDAS---------FDGFGMSKYQNRRTMNSS-DRALLNAIREINSMADRI 121
L+T I DA+ + + ++Q R + SS +R L A+ E++ ++D++
Sbjct: 79 GLATAIDYSNKDATGKRLEPRRRLEIQKLRRWQARSRIQSSIERNLAQAMNELDRLSDQL 138
Query: 122 NLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISK 181
NL + + + A ++++ + ++GRS +++ +A +Y ACR+ VPRT EI +K S+
Sbjct: 139 NLPRNVKEEAARIYRRAVEKGLVRGRSIESVIAAAIYAACRELKVPRTLDEISKHTKSSR 198
Query: 182 KEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGR 241
K+I RC++L+LK L+ V DF+ R L+L V K A I KA + + G+
Sbjct: 199 KDIARCYRLLLKELDIKVQTSDPIDFIPRIAHALNLGGGVMKKAAEILHKARSIGVTAGK 258
Query: 242 SPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
P +AAAA+Y+A+Q S ++R+QKEI +AGV EVT+R YK
Sbjct: 259 DPAGLAAAAVYIAAQLSGERRTQKEIAHVAGVTEVTVRNRYK 300
Score = 45.8 bits (107), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 41/78 (52%)
Query: 208 MSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEI 267
+ R L+LP V++ A I R+AVE +V GRS SV AAAIY A + R+ EI
Sbjct: 131 LDRLSDQLNLPRNVKEEAARIYRRAVEKGLVRGRSIESVIAAAIYAACRELKVPRTLDEI 190
Query: 268 GDIAGVAEVTIRQSYKLM 285
+ I + Y+L+
Sbjct: 191 SKHTKSSRKDIARCYRLL 208
>gi|452206067|ref|YP_007486189.1| transcription initiation factor TFB [Natronomonas moolapensis
8.8.11]
gi|452082167|emb|CCQ35419.1| transcription initiation factor TFB [Natronomonas moolapensis
8.8.11]
Length = 342
Score = 159 bits (402), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 95/270 (35%), Positives = 149/270 (55%), Gaps = 11/270 (4%)
Query: 24 DQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLSTMIGPGRGD 83
+++C++CGLVV D+ ID G EWR F + SRVG P +L+ LST IG + D
Sbjct: 62 ERVCTDCGLVVEDQRIDAGPEWRAFDAAERD-KRSRVGAPMTEMLHDKGLSTTIGFDKTD 120
Query: 84 ASFDGFG--------MSKYQNRR--TMNSSDRALLNAIREINSMADRINLTKTIVDRANN 133
A + G + NRR T N+ DR L +A+ EI+ MA + L + I + A+
Sbjct: 121 AYGNALGGRKRRQLKRLRTWNRRSKTENAHDRNLRHALGEIDRMASALGLPEPIRETASV 180
Query: 134 LFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGRCFKLILK 193
++++ D L+GRS + +A+A LY A R +GV R+ EI VS++ EI R ++ I +
Sbjct: 181 IYRRALDEDLLRGRSIEGMAAASLYAASRLDGVARSIDEIATVSRVDDLEIKRAYRYIDR 240
Query: 194 ALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYM 253
L +++ RF S L ++ A +A AVE + G+SP+ +AA+A+Y
Sbjct: 241 ELGLETPPAHPNEYLGRFASELDCEEATERLARDLAETAVEAAVHSGKSPVGIAASALYA 300
Query: 254 ASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
AS+ ++ +Q I + A V+EVTIR Y+
Sbjct: 301 ASRLRNEGLTQAAISETANVSEVTIRNRYR 330
>gi|448352384|ref|ZP_21541172.1| Transcription factor TFIIB cyclin-related protein [Natrialba
hulunbeirensis JCM 10989]
gi|445643145|gb|ELY96198.1| Transcription factor TFIIB cyclin-related protein [Natrialba
hulunbeirensis JCM 10989]
Length = 321
Score = 159 bits (402), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 95/267 (35%), Positives = 148/267 (55%), Gaps = 11/267 (4%)
Query: 27 CSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLSTMIGPGRGDASF 86
C +CGL++ + ID G EWR F N SRVG P ++ L+T I DA
Sbjct: 46 CEDCGLILEEESIDRGPEWRAF-NAAERDSKSRVGAPTTQTMHDKGLTTTIDWKNQDAYG 104
Query: 87 DGFG---------MSKYQNR-RTMNSSDRALLNAIREINSMADRINLTKTIVDRANNLFK 136
+ K+Q R RT ++ +R L A+ E + MA + + +++ + A+ L++
Sbjct: 105 RSLSSEKRSQMNRLRKWQERIRTKDAGERNLQFALSETDRMASALGVPRSVREVASVLYR 164
Query: 137 QVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGRCFKLILKALE 196
+ D ++GRS + +A++ LY ACR EG+PR+ EI AVS++ + EIGR ++ I K L
Sbjct: 165 RTLDEDLIRGRSIEGVATSTLYAACRMEGIPRSLDEIAAVSRVDRMEIGRTYRYISKELS 224
Query: 197 TSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQ 256
+ + ++ RFCS L LP+ VQ A I E ++ G+SP AAAAIY A+
Sbjct: 225 LEMQPVDPKKYVPRFCSELELPDEVQSKANEIIDTTAEKGLLSGKSPTGYAAAAIYAAAL 284
Query: 257 ASSDKRSQKEIGDIAGVAEVTIRQSYK 283
+ K++Q+E+ D+A V EVTIR Y+
Sbjct: 285 LCNKKKTQREVADVAQVTEVTIRNRYQ 311
>gi|448503002|ref|ZP_21612866.1| transcription factor TFIIB cyclin-related protein [Halorubrum
coriense DSM 10284]
gi|445693404|gb|ELZ45556.1| transcription factor TFIIB cyclin-related protein [Halorubrum
coriense DSM 10284]
Length = 317
Score = 159 bits (402), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 97/269 (36%), Positives = 155/269 (57%), Gaps = 13/269 (4%)
Query: 26 ICSECGLVVGDRVIDVGSEWRTFS-NEKSGVDPSRVGGPENPLLNGSDLSTMIGPGRGDA 84
+C +CGLV+ +R ID G EWR F+ NE+ SRVG P ++ L+T I DA
Sbjct: 42 VCEDCGLVLDERNIDRGPEWRAFNHNERQS--KSRVGAPITETMHDKGLTTTIDWKDKDA 99
Query: 85 SFDGFG---------MSKYQNR-RTMNSSDRALLNAIREINSMADRINLTKTIVDRANNL 134
+ K+Q R RT ++ +R L A+ EI+ MA + + +++ + A+ +
Sbjct: 100 YGRSLSSEKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDRMASALGVPRSVREVASVI 159
Query: 135 FKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGRCFKLILKA 194
+++ + ++GRS + +++A LY ACRQEG+PR+ E+ VS++ +KEIGR ++ I +
Sbjct: 160 YRRALNEDLIRGRSIEGVSTAALYAACRQEGIPRSLDEVADVSRVPQKEIGRTYRYISQE 219
Query: 195 LETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMA 254
L + + F+ RF S L L VQ AT I + E ++ G+SP AAAAIY A
Sbjct: 220 LGLELKPVDPKQFVPRFASALQLSEEVQSKATEIIDVSAEQGLLSGKSPTGFAAAAIYAA 279
Query: 255 SQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
S ++K++Q+E+ D+A V EVTIR Y+
Sbjct: 280 SLLCNEKKTQREVADVAQVTEVTIRNRYQ 308
>gi|435846604|ref|YP_007308854.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natronococcus occultus SP4]
gi|433672872|gb|AGB37064.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natronococcus occultus SP4]
Length = 321
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 98/286 (34%), Positives = 158/286 (55%), Gaps = 11/286 (3%)
Query: 8 CYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPL 67
C E L+ + C +CGL++ + ID G EWR F N+ SRVG P
Sbjct: 27 CPECESTALVRSSDGSEVSCEDCGLILEEEGIDHGPEWRAF-NQSERDSKSRVGAPTTQT 85
Query: 68 LNGSDLSTMI------GPGRGDASFDGFGMS---KYQNR-RTMNSSDRALLNAIREINSM 117
++ L+T I GR +S MS K+Q R RT ++ +R L A+ E + M
Sbjct: 86 MHDKGLTTTIDWKNKDAYGRSLSSEKRSQMSRLRKWQERIRTKDAGERNLQFALSETDRM 145
Query: 118 ADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVS 177
A + + +++ + A+ L+++ D ++GRS + +A++ LY ACR EG+PR+ E+ AVS
Sbjct: 146 ASALGVPRSVREVASVLYRRALDEDLIRGRSIEGVATSTLYAACRMEGIPRSLDEVAAVS 205
Query: 178 KISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDI 237
++ + EIGR ++ I + L ++ + ++ RFCS L LP VQ A I E +
Sbjct: 206 RVDRMEIGRTYRYISQELGLEMEPVDPKKYVPRFCSELDLPEEVQLKANEIITTTAEQGM 265
Query: 238 VPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
+ G+SP AAAAIY ++ ++K++Q+E+ D+A V EVTIR Y+
Sbjct: 266 LSGKSPTGYAAAAIYASALLCNEKKTQREVADVAQVTEVTIRNRYQ 311
>gi|126466031|ref|YP_001041140.1| transcription initiation factor IIB [Staphylothermus marinus F1]
gi|126014854|gb|ABN70232.1| Transcription initiation factor IIB (TFIIB) [Staphylothermus
marinus F1]
Length = 309
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 97/282 (34%), Positives = 160/282 (56%), Gaps = 11/282 (3%)
Query: 12 PDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGS 71
P+ +I D G+ IC G V+ ++VID EWR F+ E+ SR+GGP ++
Sbjct: 16 PEDQIIYDPEMGEYICLLTGEVIEEKVIDDRPEWRAFTPEERERR-SRIGGPLTSTVHDR 74
Query: 72 DLSTMIGPGRGDAS---------FDGFGMSKYQNRRTMNSS-DRALLNAIREINSMADRI 121
L+T I DA+ + + ++Q R + SS +R L A+ E++ ++D++
Sbjct: 75 GLATAIDYSNKDATGKRLEPRRRLEIQKLRRWQARSRIQSSIERNLAQAMNELDRLSDQL 134
Query: 122 NLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISK 181
NL + + + A ++++ + ++GRS +++ +A +Y ACR+ +PRT EI +K S+
Sbjct: 135 NLPRNVKEEAARIYRRAVEKGLVRGRSIESVIAAAIYAACRELKIPRTLDEIAKHTKSSR 194
Query: 182 KEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGR 241
K+I RC++L+LK L+ V DF+ R L+L V K A I +A L + G
Sbjct: 195 KDIARCYRLLLKELDIKVQTSDPIDFIPRIAHALNLSGSVMKKAAEILHRARSLGVTAGN 254
Query: 242 SPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
P +AAAA+Y+A+Q S ++R+QKEI +AGV EVT+R YK
Sbjct: 255 DPAGLAAAAVYIAAQLSGERRTQKEIAHVAGVTEVTVRNRYK 296
Score = 45.8 bits (107), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 41/78 (52%)
Query: 208 MSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEI 267
+ R L+LP V++ A I R+AVE +V GRS SV AAAIY A + R+ EI
Sbjct: 127 LDRLSDQLNLPRNVKEEAARIYRRAVEKGLVRGRSIESVIAAAIYAACRELKIPRTLDEI 186
Query: 268 GDIAGVAEVTIRQSYKLM 285
+ I + Y+L+
Sbjct: 187 AKHTKSSRKDIARCYRLL 204
>gi|222479916|ref|YP_002566153.1| transcription factor TFIIB cyclin-related [Halorubrum lacusprofundi
ATCC 49239]
gi|222452818|gb|ACM57083.1| Transcription factor TFIIB cyclin-related [Halorubrum lacusprofundi
ATCC 49239]
Length = 317
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 96/268 (35%), Positives = 152/268 (56%), Gaps = 11/268 (4%)
Query: 26 ICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLSTMIGPGRGDAS 85
+C +CGLV+ +R ID G EWR F N SRVG P ++ L+T I DA
Sbjct: 42 VCEDCGLVLDERNIDRGPEWRAF-NHSERQSKSRVGAPITETMHDKGLTTTIDWKDKDAY 100
Query: 86 FDGFG---------MSKYQNR-RTMNSSDRALLNAIREINSMADRINLTKTIVDRANNLF 135
+ K+Q R RT ++ +R L A+ EI+ MA + + +++ + A+ ++
Sbjct: 101 GRSLSSEKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDRMASALGVPRSVREVASVIY 160
Query: 136 KQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGRCFKLILKAL 195
++ + ++GRS + +++A LY ACRQEG+PR+ E+ VS++ +KEIGR ++ I + L
Sbjct: 161 RRALNEDLIRGRSIEGVSTAALYAACRQEGIPRSLDEVADVSRVPQKEIGRTYRYISQEL 220
Query: 196 ETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMAS 255
+ + F+ RF S L L VQ AT I + E ++ G+SP AAAAIY AS
Sbjct: 221 GLELKPVDPKQFVPRFASALQLSEEVQSKATEIIDVSAEQGLLSGKSPTGFAAAAIYAAS 280
Query: 256 QASSDKRSQKEIGDIAGVAEVTIRQSYK 283
++K++Q+E+ D+A V EVTIR Y+
Sbjct: 281 LLCNEKKTQREVADVAQVTEVTIRNRYQ 308
>gi|167044706|gb|ABZ09376.1| putative transcription factor TFIIB repeat protein [uncultured
marine microorganism HF4000_APKG7N23]
Length = 242
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 88/227 (38%), Positives = 132/227 (58%), Gaps = 10/227 (4%)
Query: 67 LLNGSDLSTMIGPGRGDASFDG---------FGMSKYQNR-RTMNSSDRALLNAIREINS 116
+++ LST IG G D + + M K+QNR R NS+DR L A+ E+N
Sbjct: 4 MVHDKGLSTDIGWGSRDIYGNNVPTKNRSQVYRMRKWQNRTRASNSADRNLAQALNELNR 63
Query: 117 MADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAV 176
+A +I L + + + A L+++ ++GRS + +A+A LY ACR+ VPRT EI
Sbjct: 64 LASKIGLHRQVREEAAMLYRRAVQDNLVRGRSVEGVAAAALYGACRRCEVPRTLSEITEA 123
Query: 177 SKISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELD 236
S+ SKKE+GR ++ I + L+ ++ + ++ RFC L LP V+ AA +I +A+E +
Sbjct: 124 SRASKKEVGRTYRYISRELKLNLQPASPAVYIIRFCRELELPGYVESAAINILNQAIEAE 183
Query: 237 IVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
+ GR P VAAAAIY+AS +++QK I D GV EVTIR YK
Sbjct: 184 LTSGRGPTGVAAAAIYIASVVYDQRKTQKTIADTVGVTEVTIRNRYK 230
>gi|389846997|ref|YP_006349236.1| transcription initiation factor TFB [Haloferax mediterranei ATCC
33500]
gi|388244303|gb|AFK19249.1| transcription initiation factor TFB [Haloferax mediterranei ATCC
33500]
Length = 276
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 96/268 (35%), Positives = 152/268 (56%), Gaps = 11/268 (4%)
Query: 26 ICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLSTMIGPGRGDAS 85
+C +CGLV+ +R ID G EWR F N SRVG P ++ L+T I DA
Sbjct: 1 MCDDCGLVLDERQIDRGPEWRAF-NHSERQSKSRVGAPITETMHDRGLTTTIDWKDKDAY 59
Query: 86 FDGFG---------MSKYQNR-RTMNSSDRALLNAIREINSMADRINLTKTIVDRANNLF 135
+ K+Q R RT ++ +R L A+ EI+ MA + + +++ + A+ ++
Sbjct: 60 GRSLSSEKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDRMASALGVPRSVREVASVIY 119
Query: 136 KQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGRCFKLILKAL 195
++ + ++GRS + +A++ LY ACRQEG+PR+ E+ VS++ +KEIGR ++ I + L
Sbjct: 120 RRALNEDLIRGRSIEGVATSALYAACRQEGIPRSLDEVAEVSRVPQKEIGRTYRYISQEL 179
Query: 196 ETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMAS 255
+ + F+ RF S L L VQ AT I + E ++ G+SP AAAAIY AS
Sbjct: 180 GLELKPVDPKQFVPRFASALELSEEVQAKATEIIDVSAEQGLLSGKSPTGFAAAAIYAAS 239
Query: 256 QASSDKRSQKEIGDIAGVAEVTIRQSYK 283
++K++Q+E+ D+A V EVTIR Y+
Sbjct: 240 LLCNEKKTQREVADVAQVTEVTIRNRYQ 267
>gi|353237099|emb|CCA69080.1| related to RRS1-regulator of ribosome biogenesis [Piriformospora
indica DSM 11827]
Length = 668
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 97/295 (32%), Positives = 151/295 (51%), Gaps = 45/295 (15%)
Query: 47 TFSNEKSGVDPSRVGGPENPLLNGSD-LSTMIGPGRGDASFDGFGMSKYQNRRTMNSSDR 105
TF+NE+ G DPSRVGGP+NP+ G D LST I G++ + + R + + S R
Sbjct: 346 TFANEE-GDDPSRVGGPQNPIYEGLDSLSTSISFRDGNSGHS-RELQRAAARLSNDKSQR 403
Query: 106 ALLNAIREINSMADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEG 165
+L +I SM D+ +L +++ D A L+++ + K L+G+ DAI +ACL+IACRQ
Sbjct: 404 SLTVVFEQIQSMCDQYSLPRSVSDTAKMLYRRTEEEKLLRGKQPDAIVAACLFIACRQAA 463
Query: 166 VPRTFKEICAVSKISKKEIGRCFKLILKALET---------------------------- 197
VPRTFKEI ++ + KK+IG+C+K + +A
Sbjct: 464 VPRTFKEIVELTNVPKKQIGQCYKALERAFNLAPGATAANPSGHSSGGAGDGNVGTSGPS 523
Query: 198 --------------SVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSP 243
S + + D M+R+C+ L LP +Q ++ +A DI GRSP
Sbjct: 524 GAQKGDAPLPGGAGSTNSTSPEDLMARYCNYLDLPPALQAYCADVSGRARSRDIASGRSP 583
Query: 244 ISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKLFPQDFV 298
+S+A+ IY + S KEIG AGV+E TI+ Y+L++ L + ++
Sbjct: 584 VSIASGIIYFTAMLFGYSVSLKEIGATAGVSEGTIKLVYRLLWADREALVNEKWI 638
>gi|407462999|ref|YP_006774316.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus koreensis AR1]
gi|407046621|gb|AFS81374.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus koreensis AR1]
Length = 289
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 87/275 (31%), Positives = 150/275 (54%), Gaps = 11/275 (4%)
Query: 19 DYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLSTMIG 78
D G+Q C +CG VV ++ + G EWR F + SG +P+R G P + L++ LST+I
Sbjct: 4 DNVTGEQFCGKCGYVVSEKSNESGPEWRAFQTD-SGANPARTGAPSSLLIHDMGLSTVIN 62
Query: 79 PGRGDASFDGFGMS---KYQNRRTMNS-------SDRALLNAIREINSMADRINLTKTIV 128
P DA+ S + RT +S DR L A+ E+ + D+I L+ ++
Sbjct: 63 PINKDATGKPLSTSMKSTIERLRTWDSRSQAHEPQDRNLRQALGELTRIKDKIALSTNVL 122
Query: 129 DRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGRCF 188
++A L+++ + K ++GRS A+ +A +Y ACR PRT K++ + + +K+I RC+
Sbjct: 123 EKAAYLYRKALEKKLVRGRSISAMIAASIYAACRDTETPRTLKDVADAANVKRKDIARCY 182
Query: 189 KLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAA 248
+L+ LE + ++ + +SR S L L +++ A + ++A G+ P+ +AA
Sbjct: 183 RLLHHELELKMPVVNSIQCISRISSKLELSEKIKRHAIKVLQEAQNNKESAGKDPMGLAA 242
Query: 249 AAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
A+Y+A +Q+++ + AGV EVTIR YK
Sbjct: 243 TALYIACLKHGGSITQRDLAEAAGVTEVTIRNRYK 277
Score = 46.2 bits (108), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 46/79 (58%)
Query: 208 MSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEI 267
++R ++L V + A ++ RKA+E +V GRS ++ AA+IY A + + R+ K++
Sbjct: 108 LTRIKDKIALSTNVLEKAAYLYRKALEKKLVRGRSISAMIAASIYAACRDTETPRTLKDV 167
Query: 268 GDIAGVAEVTIRQSYKLMY 286
D A V I + Y+L++
Sbjct: 168 ADAANVKRKDIARCYRLLH 186
>gi|118576516|ref|YP_876259.1| transcription initiation factor TFIIB [Cenarchaeum symbiosum A]
gi|118195037|gb|ABK77955.1| transcription initiation factor TFIIB [Cenarchaeum symbiosum A]
Length = 328
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 88/274 (32%), Positives = 153/274 (55%), Gaps = 12/274 (4%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLST 75
++ D G+ C+ CG V+ D++ D+G+EWR+FS +++ SR G + ++ LST
Sbjct: 46 IVTDENQGELFCATCGFVITDKLEDMGAEWRSFSGDET--SRSRSGAGTSLAMHDMGLST 103
Query: 76 MIGPGRGDASFDGFGMS--------KYQNRRTM--NSSDRALLNAIREINSMADRINLTK 125
+IG D + S + + RT +S+DR L A+ E++ M D++ L
Sbjct: 104 VIGSANKDTTGKPLSASMRTSIERLRTWDSRTQAHSSADRNLRQALNEMDKMKDKLALAD 163
Query: 126 TIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIG 185
++++A ++++ + K ++GRS + +ACLY ACR PRT +I I +K++
Sbjct: 164 AVIEKAAYIYRKAMEKKLVRGRSIHGLVAACLYAACRNTETPRTLDDIAKGINIRRKDVA 223
Query: 186 RCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPIS 245
RC++LI + LE + ++ +SR S L ++ A I +A +L +V G+ P+
Sbjct: 224 RCYRLIFRELELKMPVVDPVKGVSRIASIAELNERTKRRAITILDQAKKLGMVAGKDPMG 283
Query: 246 VAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIR 279
+AAAA+Y+A S + +SQK+I +GV EVTIR
Sbjct: 284 IAAAALYLACIGSGEAKSQKDISLASGVTEVTIR 317
Score = 37.7 bits (86), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 41/79 (51%)
Query: 208 MSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEI 267
M + L+L + V + A +I RKA+E +V GRS + AA +Y A + + R+ +I
Sbjct: 152 MDKMKDKLALADAVIEKAAYIYRKAMEKKLVRGRSIHGLVAACLYAACRNTETPRTLDDI 211
Query: 268 GDIAGVAEVTIRQSYKLMY 286
+ + + Y+L++
Sbjct: 212 AKGINIRRKDVARCYRLIF 230
>gi|344212211|ref|YP_004796531.1| transcription initiation factor IIB [Haloarcula hispanica ATCC
33960]
gi|448671788|ref|ZP_21687593.1| transcription initiation factor IIB [Haloarcula amylolytica JCM
13557]
gi|343783566|gb|AEM57543.1| transcription initiation factor IIB [Haloarcula hispanica ATCC
33960]
gi|445764924|gb|EMA16067.1| transcription initiation factor IIB [Haloarcula amylolytica JCM
13557]
Length = 324
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 97/289 (33%), Positives = 156/289 (53%), Gaps = 11/289 (3%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLST 75
L+ D G+ +C +CGLVV + ID G EWR F + K + SRVG P +++ LST
Sbjct: 37 LLSDSERGETVCEDCGLVVEEDEIDPGPEWRAF-DSKEKDEKSRVGAPTTNMMHDKGLST 95
Query: 76 MIGPGRGDA---SFDGFGMSKYQNRRTMN-------SSDRALLNAIREINSMADRINLTK 125
IG DA S K Q RT N S +R L A+ EI+ MA + L +
Sbjct: 96 NIGWQDKDAYGNSLSSRQREKMQRLRTWNERFRTRDSKERNLKQALGEIDRMASALGLPE 155
Query: 126 TIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIG 185
+ + A+ ++++ D L GRS + +++A LY A RQ G PR+ EI VS++ K EI
Sbjct: 156 NVRETASVIYRRALDEDLLPGRSIEGVSTASLYAAARQAGTPRSLDEIAGVSRVEKDEIA 215
Query: 186 RCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPIS 245
R ++ +++ L + ++ RF S+L L V++ A + + A + + G+SP+
Sbjct: 216 RTYRYVVRELSLEIQPADPESYVPRFASDLDLSEEVERRARQLLQNAKQEGVHSGKSPVG 275
Query: 246 VAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKLFP 294
+AAAA+Y AS +++K +Q E+ ++A ++EVTIR Y + + P
Sbjct: 276 LAAAAVYAASLLTNEKVTQSEVSEVANISEVTIRNRYHELLEAEDNIHP 324
>gi|329766221|ref|ZP_08257779.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosoarchaeum limnia SFB1]
gi|393795806|ref|ZP_10379170.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosoarchaeum limnia BG20]
gi|329137280|gb|EGG41558.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosoarchaeum limnia SFB1]
Length = 304
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 80/289 (27%), Positives = 160/289 (55%), Gaps = 11/289 (3%)
Query: 5 KVCCYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPE 64
K C L+ D +G+ CS+CG V+ +++ + G EWR+F+ ++ G D +R G P
Sbjct: 9 KELCPRCAQGKLVTDNESGEMFCSKCGFVMSEKLQESGPEWRSFTQDEHG-DRARAGAPT 67
Query: 65 NPLLNGSDLSTMIGPGRGDASFDGFGMS---------KYQNRRTMNSS-DRALLNAIREI 114
+ ++ L+T+I P DA+ S + NR ++ DR A E+
Sbjct: 68 SLTMHDMGLATIINPINKDATGKPLSASMKSTIERLRTWDNRSQVHEPVDRNFRQAFSEL 127
Query: 115 NSMADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEIC 174
N + D++ ++ ++++A ++++ D ++GRS A+ ++ LY ACR PR K++
Sbjct: 128 NRLKDKLAISDAVIEKAAYIYRKALDKGLVRGRSISALMASALYAACRDTETPRNLKDVE 187
Query: 175 AVSKISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVE 234
+ I +K+I RC++L++K L+ + + + ++R S + + ++ A ++ ++A E
Sbjct: 188 QAANIKRKDIARCYRLLIKELDLKMPVTDSIQCVARIASRIGIAEKTKRYAVNVLKQAQE 247
Query: 235 LDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
++ G+ P+ +AAAA+Y++ + + ++Q++I + A V EVTIR YK
Sbjct: 248 NEVSAGKDPMGLAAAALYLSCVKNGEDKTQRDIAEAANVTEVTIRNRYK 296
Score = 40.8 bits (94), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 45/78 (57%)
Query: 208 MSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEI 267
++R L++ + V + A +I RKA++ +V GRS ++ A+A+Y A + + R+ K++
Sbjct: 127 LNRLKDKLAISDAVIEKAAYIYRKALDKGLVRGRSISALMASALYAACRDTETPRNLKDV 186
Query: 268 GDIAGVAEVTIRQSYKLM 285
A + I + Y+L+
Sbjct: 187 EQAANIKRKDIARCYRLL 204
>gi|393234326|gb|EJD41890.1| cyclin-like protein [Auricularia delicata TFB-10046 SS5]
Length = 345
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 98/307 (31%), Positives = 170/307 (55%), Gaps = 27/307 (8%)
Query: 12 PDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEW------RTFSNEKSGVDPSRVGGPEN 65
P ++E++ +GD +C++CGLV+GDR++D SE RTF++ + G DPSRVG ++
Sbjct: 33 PHPRIVEEFSSGDLVCADCGLVLGDRIVDTRSECARRASGRTFADNE-GDDPSRVGAAQD 91
Query: 66 PLLNGSD-LSTMIGPGRGDASFDGFGMSKYQNRRTMNSSDRAL-----LNAIREINSMAD 119
PLL+ ++ LST IG DG G ++ + RR + + + A+R+I
Sbjct: 92 PLLDEAEQLSTSIG-----FRDDGTGAAR-ELRRALQGTVAGIRASRTQRALRDIGDKCA 145
Query: 120 RINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQE-GVPRTFKEICAVSK 178
+ + A LFK+V + + L+ ++ DA+ + C+++ACR + RTF +IC ++
Sbjct: 146 AFGMPLAVAASAKLLFKRVEEQRLLRSQAPDAVVATCIFVACRMDRATARTFHDICTKTR 205
Query: 179 ISKKEIGRCFKLILKALET------SVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKA 232
+ +K + RCF+++ +A + +V D ++R CS L+L V A + +A
Sbjct: 206 VPRKVLARCFRVLERAFQLAPAGQGAVAGARAEDLLARHCSRLALRPGVATCAASLIVRA 265
Query: 233 VELDIVPGRSPISVAAAAIYMASQASSD-KRSQKEIGDIAGVAEVTIRQSYKLMYPHASK 291
+L GR+P SVA AAIY A++ D +S +I +AG+ E T+ YK+M+ K
Sbjct: 266 RDLGTAGGRNPKSVAGAAIYFAARLLGDASKSAGDIAHVAGIQEATLLVVYKMMHADRDK 325
Query: 292 LFPQDFV 298
L Q+++
Sbjct: 326 LVMQEWI 332
>gi|448681685|ref|ZP_21691776.1| transcription initiation factor IIB [Haloarcula argentinensis DSM
12282]
gi|445767555|gb|EMA18658.1| transcription initiation factor IIB [Haloarcula argentinensis DSM
12282]
Length = 324
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 97/289 (33%), Positives = 156/289 (53%), Gaps = 11/289 (3%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLST 75
L+ D G+ +C +CGLVV + ID G EWR F + K + SRVG P +++ LST
Sbjct: 37 LLSDSERGETVCEDCGLVVEEDEIDPGPEWRAF-DSKEKDEKSRVGAPTTNMMHDKGLST 95
Query: 76 MIGPGRGDA---SFDGFGMSKYQNRRTMN-------SSDRALLNAIREINSMADRINLTK 125
IG DA S K Q RT N S +R L A+ EI+ MA + L +
Sbjct: 96 NIGWQDKDAYGNSLSSRQREKMQRLRTWNERFRTRDSKERNLKQALGEIDRMASALGLPE 155
Query: 126 TIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIG 185
+ + A+ ++++ D L GRS + +++A LY A RQ G PR+ EI VS++ K EI
Sbjct: 156 NVRETASVIYRRALDEDLLPGRSIEGVSTASLYAAARQAGTPRSLDEIAGVSRVEKDEIA 215
Query: 186 RCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPIS 245
R ++ +++ L + ++ RF S+L L V++ A + + A + + G+SP+
Sbjct: 216 RTYRYVVRELSLEIQPADPESYVPRFASDLDLSEEVERRARQLLQNAKQEGVHSGKSPVG 275
Query: 246 VAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKLFP 294
+AAAA+Y AS +++K +Q E+ ++A ++EVTIR Y + + P
Sbjct: 276 LAAAAVYAASLLTNEKVTQSEVSEVANISEVTIRNRYHELLEAEDNIHP 324
>gi|76801491|ref|YP_326499.1| transcription initiation factor TFB 1 [Natronomonas pharaonis DSM
2160]
gi|76557356|emb|CAI48933.1| transcription initiation factor TFB [Natronomonas pharaonis DSM
2160]
Length = 322
Score = 158 bits (400), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 92/272 (33%), Positives = 153/272 (56%), Gaps = 11/272 (4%)
Query: 22 AGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLSTMIGPGR 81
G+ +C +CGLV+ + ID G EWR F N SRVG P ++ L+T I
Sbjct: 43 GGELVCEDCGLVIEEENIDRGPEWRAF-NHSERQSKSRVGAPTTQTMHDKGLTTQIDWKD 101
Query: 82 GDASFDGFG---------MSKYQNR-RTMNSSDRALLNAIREINSMADRINLTKTIVDRA 131
DA + K+Q R RT ++ +R L A+ EI+ M+ + + +++ + A
Sbjct: 102 KDAYGRSISSEKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDRMSSALGVPRSVREVA 161
Query: 132 NNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGRCFKLI 191
+ ++++ D ++GRS + +A+A LY ACRQEG+PR+ E+ V+++ +KEIGR ++ I
Sbjct: 162 SVIYRRALDDDLIRGRSIEGVATAALYAACRQEGIPRSLDEVADVARVEQKEIGRTYRYI 221
Query: 192 LKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAI 251
+ L ++ + ++ RFCS L L V++ I E ++ G+SP AAAAI
Sbjct: 222 AQELSLGLEPVDPVQYVPRFCSELGLSEEVEQKTREIIEVTAEKGMLSGKSPTGYAAAAI 281
Query: 252 YMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
Y AS ++K++Q+E+ ++A V EVTIR Y+
Sbjct: 282 YAASLLCNEKKTQREVAEVAQVTEVTIRNRYQ 313
>gi|218883370|ref|YP_002427752.1| transcription initiation factor IIB [Desulfurococcus kamchatkensis
1221n]
gi|218764986|gb|ACL10385.1| Transcription initiation factor IIB (TFIIB) [Desulfurococcus
kamchatkensis 1221n]
Length = 319
Score = 158 bits (400), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 93/281 (33%), Positives = 157/281 (55%), Gaps = 10/281 (3%)
Query: 12 PDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGS 71
P ++ D G+ +C + G V+ ++VID EWR F++E+ G +R GGP ++
Sbjct: 29 PQDKIVYDTTHGEYVCQDTGEVIEEKVIDERPEWRAFTSEERG-RRARTGGPVTATVHDM 87
Query: 72 DLSTMIGPGRGDAS--------FDGFGMSKYQNR-RTMNSSDRALLNAIREINSMADRIN 122
+T I DA+ + + K+Q R R + S +R L A+ E++ ++D +N
Sbjct: 88 GFATTIDYTDRDAAGRRLTEKKHELVKLRKWQARTRIITSVERNLAQAMNELDRLSDILN 147
Query: 123 LTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKK 182
L + + A +++ + ++GRS ++I +A +Y+ACR+ VPR+ EI +++++K
Sbjct: 148 LPSYVKEEAARIYRNAVEKGIVRGRSIESIIAATIYLACREMKVPRSLDEITRHTRVNRK 207
Query: 183 EIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRS 242
EI RC++L+L+ L V D++ R L LP K A I KA E + G+
Sbjct: 208 EIARCYRLLLRELHIKVTTTDPVDYVPRIVHGLGLPGQAVKIAIEIINKAKEQGVTGGKD 267
Query: 243 PISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
P +AAAA+Y+A++ +KR+QKEI +AGV EVT+R YK
Sbjct: 268 PAGLAAAAVYIAAEQLGEKRTQKEIAHVAGVTEVTVRNRYK 308
Score = 46.2 bits (108), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 47/95 (49%), Gaps = 4/95 (4%)
Query: 208 MSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEI 267
+ R L+LP+ V++ A I R AVE IV GRS S+ AA IY+A + RS EI
Sbjct: 139 LDRLSDILNLPSYVKEEAARIYRNAVEKGIVRGRSIESIIAATIYLACREMKVPRSLDEI 198
Query: 268 GDIAGVAEVTIRQSYKL----MYPHASKLFPQDFV 298
V I + Y+L ++ + P D+V
Sbjct: 199 TRHTRVNRKEIARCYRLLLRELHIKVTTTDPVDYV 233
>gi|170291077|ref|YP_001737893.1| transcription factor TFIIB cyclin-related protein [Candidatus
Korarchaeum cryptofilum OPF8]
gi|170175157|gb|ACB08210.1| Transcription factor TFIIB cyclin-related [Candidatus Korarchaeum
cryptofilum OPF8]
Length = 356
Score = 158 bits (400), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 90/274 (32%), Positives = 141/274 (51%), Gaps = 2/274 (0%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLST 75
++ED GD +C CGL++ +D +WR F +++ ++ + G P PL G L T
Sbjct: 51 VVEDPNTGDLVCQNCGLILDSSALDFSKDWRAFDSDEY-IERAHAGAPITPLRPGFGLDT 109
Query: 76 MIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADRINLTKTIVDRANNLF 135
I +G AS + K + +S ++ + A+R+I AD + L + ++ A L+
Sbjct: 110 DIVLTKG-ASKKSVNLLKRAQKHAADSKEKTIEPALRKIRDAADSLVLPQETIEDAATLY 168
Query: 136 KQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGRCFKLILKAL 195
+ +KGRS DA+ +A +Y ACR+ VP+T +EI + +KEIGR F+ + + L
Sbjct: 169 RMAARAGLVKGRSMDAMVAAVIYAACRRTDVPKTLEEISKFFALEEKEIGRSFRFLFRKL 228
Query: 196 ETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMAS 255
+ +F+ S LSLP V A I + A GR P+ VAAAA+YMA
Sbjct: 229 GIQIPPPKPENFVYLIASKLSLPEEVATQAIRIIKIAKRNGATMGREPVGVAAAAVYMAC 288
Query: 256 QASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHA 289
Q R+Q+E+ A V EVT+R YK + A
Sbjct: 289 QELGLHRTQRELAQAANVTEVTVRNRYKELIARA 322
>gi|320100432|ref|YP_004176024.1| transcription initiation factor IIB (TFIIB) [Desulfurococcus
mucosus DSM 2162]
gi|319752784|gb|ADV64542.1| Transcription initiation factor IIB (TFIIB) [Desulfurococcus
mucosus DSM 2162]
Length = 315
Score = 158 bits (400), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 95/283 (33%), Positives = 156/283 (55%), Gaps = 10/283 (3%)
Query: 12 PDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGS 71
P ++ D G+ +C + G V+ ++VID EWR F+ E+ G +R GGP ++
Sbjct: 25 PQDKIVYDAAHGEYVCQDTGEVIEEKVIDERPEWRAFTPEERG-RRARTGGPVTAAVHDM 83
Query: 72 DLSTMIGPGRGDAS--------FDGFGMSKYQNR-RTMNSSDRALLNAIREINSMADRIN 122
+T I DA+ + + K+Q R R + S +R L A+ E++ +AD +N
Sbjct: 84 GFATSIDYTDRDAAGRRLTEKKHELVKLRKWQARTRILTSVERNLAQAMNELDRLADVLN 143
Query: 123 LTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKK 182
L + + A ++++ D ++GRS +++ +A +Y+ACR+ VPR+ EI ++I +K
Sbjct: 144 LPSYVKEEAARIYREAVDRGLVRGRSIESVIAAAIYLACREMKVPRSLDEITRHTRIGRK 203
Query: 183 EIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRS 242
EI RC++L+L+ L V D++ R L LP K A I A E + G+
Sbjct: 204 EIARCYRLLLRELRIKVSTTDPADYVPRIVHGLGLPGQAVKLAIEIINTAKEHGVTGGKD 263
Query: 243 PISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLM 285
P +AAAA+YMA++ +K++QKEI IAGV EVT+R YK +
Sbjct: 264 PAGLAAAAVYMAAERLGEKKTQKEIAHIAGVTEVTVRNRYKEL 306
>gi|255513741|gb|EET90006.1| Transcription factor TFIIB cyclin-related [Candidatus Micrarchaeum
acidiphilum ARMAN-2]
Length = 380
Score = 158 bits (399), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 93/282 (32%), Positives = 151/282 (53%), Gaps = 15/282 (5%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTF------SNEKSGVDPSRVGGPENPL-- 67
LI D G+ +C+ CGLV+ + V D G EWR F S ++G P + P L
Sbjct: 92 LIFDSERGELVCNNCGLVIEENVTDTGPEWRAFDADQRNSRARTGA-PMKYTRPNKGLVT 150
Query: 68 ---LNGSDLSTMIGPGRGDASFDGFGMSKYQNRRTM-NSSDRALLNAIREINSMADRINL 123
L D+ + P + A + M K+ R ++ +SS+R L A+ E+N ++ + L
Sbjct: 151 EIDLYNKDIRGVRIPSKRQAQL--YRMRKWHKRASIASSSERNYLIALPELNRVSSYLGL 208
Query: 124 TKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKE 183
+ I + A L+++ ++GR + + A +Y ACR+ G+PRT EI +S + KKE
Sbjct: 209 PENIRENAALLYRKCVQNNLIRGRPIETVVQAVIYAACRKAGMPRTLDEIATISGLPKKE 268
Query: 184 IGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSP 243
IGR ++ I L + L ++ R+ + L L Q+ A + A+ +V GRSP
Sbjct: 269 IGRAYRAISHELGLKIPLTDPIAYVPRYVNALKLSGEAQEKAVELLNDAMAKGLVSGRSP 328
Query: 244 ISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLM 285
V+AAA+Y+A + ++R+QKE+ D+AGV EVTIR Y+ +
Sbjct: 329 TGVSAAAVYIAGALAGERRTQKEVADVAGVTEVTIRNRYREL 370
>gi|448579977|ref|ZP_21644806.1| transcription initiation factor TFB [Haloferax larsenii JCM 13917]
gi|445722650|gb|ELZ74307.1| transcription initiation factor TFB [Haloferax larsenii JCM 13917]
Length = 325
Score = 158 bits (399), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 95/271 (35%), Positives = 152/271 (56%), Gaps = 11/271 (4%)
Query: 23 GDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLSTMIGPGRG 82
G+ I E G+V+ + ID G EWR F N + SRVG P ++ L+T I
Sbjct: 46 GELIHEETGIVLEEERIDPGPEWRAF-NHSERQEKSRVGAPTTKTMHDKGLTTTIDWKDK 104
Query: 83 DASFDGFG---------MSKYQNR-RTMNSSDRALLNAIREINSMADRINLTKTIVDRAN 132
DA + K+Q R RT ++ +R L A+ EI+ MA + + +++ + A+
Sbjct: 105 DAYGRSISSRKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDRMASALGVPRSVREVAS 164
Query: 133 NLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGRCFKLIL 192
++++ D ++GRS + +A+ACLY ACR+EG+PR+ +EI VS++ +KEIGR ++ +
Sbjct: 165 VIYRRALDEDLIRGRSIEGVATACLYAACRKEGIPRSLEEIAEVSRVERKEIGRTYRYVS 224
Query: 193 KALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIY 252
+ L + + ++ RF S L L VQ A I E ++ G+SP AAAAIY
Sbjct: 225 QELGLEMRPVDPKKYVPRFSSELDLSKEVQSKANEIIETTAEQGLLSGKSPTGYAAAAIY 284
Query: 253 MASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
AS ++K++Q+E+ D+A V EVTIR Y+
Sbjct: 285 AASLLCNEKKTQREVADVAQVTEVTIRNRYQ 315
>gi|448737144|ref|ZP_21719196.1| transcription initiation factor TFB [Halococcus thailandensis JCM
13552]
gi|445804357|gb|EMA54614.1| transcription initiation factor TFB [Halococcus thailandensis JCM
13552]
Length = 305
Score = 158 bits (399), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 94/271 (34%), Positives = 153/271 (56%), Gaps = 11/271 (4%)
Query: 23 GDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLSTMIGPGRG 82
G+ +C +CGLVV + ID G EWR F N SRVG P ++ L+T I
Sbjct: 26 GELVCEDCGLVVEEENIDPGPEWRAF-NHAERQQKSRVGAPTTQTMHDKGLTTTIDWKDK 84
Query: 83 DASFDGFG---------MSKYQNR-RTMNSSDRALLNAIREINSMADRINLTKTIVDRAN 132
DA + K+Q R RT ++ +R L A+ EI+ MA + + +++ + A+
Sbjct: 85 DAYGRSISSKKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDRMASALGVPRSVREVAS 144
Query: 133 NLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGRCFKLIL 192
++++ ++GRS + +A++ LY ACR+EG+PR+ +EI VS++ +KEIGR ++ +
Sbjct: 145 VIYRRSLADDLIRGRSIEGVATSALYAACRKEGIPRSLEEISEVSRVERKEIGRTYRYVS 204
Query: 193 KALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIY 252
+ L + + ++ RFCS L+L VQ A I + ++ G+SP AAAAIY
Sbjct: 205 QELALEMRPVDPKKYVPRFCSELTLSEEVQAKANDIIETTADEGLLSGKSPTGYAAAAIY 264
Query: 253 MASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
AS ++K++Q+E+ D+A V EVTIR Y+
Sbjct: 265 AASLLCNEKKTQREVADVAQVTEVTIRNRYQ 295
>gi|354611426|ref|ZP_09029382.1| Transcription initiation factor IIB [Halobacterium sp. DL1]
gi|353196246|gb|EHB61748.1| Transcription initiation factor IIB [Halobacterium sp. DL1]
Length = 330
Score = 158 bits (399), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 95/277 (34%), Positives = 151/277 (54%), Gaps = 11/277 (3%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLST 75
L+ D G+ +C ECGLVV + ID G EWR F N SRVG P +++ LST
Sbjct: 41 LVVDEERGETVCGECGLVVEEDSIDRGPEWRAF-NATENDQKSRVGAPTTNMMHDKGLST 99
Query: 76 MIGPGRGDASFDGFG---------MSKYQNR-RTMNSSDRALLNAIREINSMADRINLTK 125
IG DA + + K+ R RT NS +R L A+ EI M+ + L
Sbjct: 100 NIGWQNKDAYGNSLSGRQRRKMQRLRKWNERFRTRNSKERNLKQALGEIERMSSALGLPD 159
Query: 126 TIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIG 185
+ + A+ ++++ + L GRS + +A++ LY A RQ PR+ E+ VS++ + EI
Sbjct: 160 NVRETASVIYRRALNEDLLPGRSIEGVATSALYAAARQANTPRSLDEVANVSRVERDEIA 219
Query: 186 RCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPIS 245
R ++ +++ L V ++ RFCS L LP+ V++ A + A + I G+SP+
Sbjct: 220 RTYRYVVRELGLEVAPTDPASYVPRFCSELDLPDEVERRARELLTAAEDAGITSGKSPVG 279
Query: 246 VAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSY 282
+AAAA+Y AS ++++ +Q E+ D+A ++EVTIR Y
Sbjct: 280 LAAAAVYAASLLTNERITQSEVSDVANISEVTIRNRY 316
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 55/96 (57%), Gaps = 1/96 (1%)
Query: 208 MSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEI 267
+ R S L LP+ V++ A+ I R+A+ D++PGRS VA +A+Y A++ ++ RS E+
Sbjct: 148 IERMSSALGLPDNVRETASVIYRRALNEDLLPGRSIEGVATSALYAAARQANTPRSLDEV 207
Query: 268 GDIAGVAEVTIRQSYKLMYPHAS-KLFPQDFVFHTP 302
+++ V I ++Y+ + ++ P D + P
Sbjct: 208 ANVSRVERDEIARTYRYVVRELGLEVAPTDPASYVP 243
>gi|322370876|ref|ZP_08045431.1| transcription initiation factor TFB [Haladaptatus paucihalophilus
DX253]
gi|320549553|gb|EFW91212.1| transcription initiation factor TFB [Haladaptatus paucihalophilus
DX253]
Length = 319
Score = 157 bits (398), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 96/286 (33%), Positives = 156/286 (54%), Gaps = 11/286 (3%)
Query: 8 CYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPL 67
C E L+ + +C +CGLVV + +D G EWR F N SRVG P
Sbjct: 26 CPECGSKNLVNSADQSELVCDDCGLVVEEDHVDRGPEWRAF-NHSERQSKSRVGAPTTQT 84
Query: 68 LNGSDLSTMIGPGRGDASFDGFG---------MSKYQNR-RTMNSSDRALLNAIREINSM 117
++ L+T I DA + K+Q R RT ++ +R L A+ EI+ M
Sbjct: 85 MHDKGLTTTIDWKNQDAYGRSLSSEKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDRM 144
Query: 118 ADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVS 177
A + + +++ + A+ ++++ ++GRS + +A++ LY ACRQEG+PR+ +E+ VS
Sbjct: 145 ASALGVPRSVREVASVIYRRALAEDLIRGRSIEGVATSTLYAACRQEGIPRSLEEVAEVS 204
Query: 178 KISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDI 237
++ +KEIGR ++ I + L + + ++ RFCS+L + VQ A I E +
Sbjct: 205 RVDQKEIGRTYRYISQELGLEMKPVDPKQYVPRFCSDLGVSEEVQSKANEIIDTTAEQGL 264
Query: 238 VPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
+ G+SP AAAAIY AS ++K++Q+E+ D+A V EVTIR Y+
Sbjct: 265 LSGKSPTGYAAAAIYAASLLCNEKKTQREVADVAQVTEVTIRNRYQ 310
>gi|118577046|ref|YP_876789.1| transcription initiation factor TFIIB [Cenarchaeum symbiosum A]
gi|118195567|gb|ABK78485.1| transcription initiation factor TFIIB [Cenarchaeum symbiosum A]
Length = 303
Score = 157 bits (398), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 79/286 (27%), Positives = 160/286 (55%), Gaps = 11/286 (3%)
Query: 8 CYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPL 67
C L+ D +G+ C++CG V+ +++ + G EWR+F++++ G D +R G P +
Sbjct: 11 CQRCGKGKLVTDNESGEMFCAKCGFVMTEKLQESGPEWRSFAHDEHG-DRARTGAPTSLT 69
Query: 68 LNGSDLSTMIGPGRGDASFDGFGMS---------KYQNRRTMNSS-DRALLNAIREINSM 117
++ L+T+I P DAS S + NR ++ DR A E+N +
Sbjct: 70 MHDMGLATIINPANRDASGRPLAASMKSTIDRLRTWDNRSQVHEPVDRNYRQAFSELNRL 129
Query: 118 ADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVS 177
D++ ++ ++++A ++++ D ++GRS A+ ++ LY ACR PR K++ +
Sbjct: 130 KDKLAISDAVIEKAAYIYRKALDKGLVRGRSISALMASALYAACRDTATPRNLKDVEEAA 189
Query: 178 KISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDI 237
I +K+I RC++L++K L+ + + + ++R S++ + ++ A + ++A + ++
Sbjct: 190 NIKRKDIARCYRLLVKELDLRMPVTDSIQCVARISSHIGIAEKTKRYAVVVLKEAQKHEV 249
Query: 238 VPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
G+ P+ +AAAA+Y++ + + ++Q++I D A V EVTIR YK
Sbjct: 250 SAGKDPMGLAAAALYLSCVKNGEDKTQRDIADAANVTEVTIRNRYK 295
Score = 42.0 bits (97), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 48/87 (55%)
Query: 208 MSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEI 267
++R L++ + V + A +I RKA++ +V GRS ++ A+A+Y A + ++ R+ K++
Sbjct: 126 LNRLKDKLAISDAVIEKAAYIYRKALDKGLVRGRSISALMASALYAACRDTATPRNLKDV 185
Query: 268 GDIAGVAEVTIRQSYKLMYPHASKLFP 294
+ A + I + Y+L+ P
Sbjct: 186 EEAANIKRKDIARCYRLLVKELDLRMP 212
>gi|390937904|ref|YP_006401642.1| transcription factor TFIIB cyclin-related protein [Desulfurococcus
fermentans DSM 16532]
gi|390191011|gb|AFL66067.1| Transcription factor TFIIB cyclin-related protein [Desulfurococcus
fermentans DSM 16532]
Length = 319
Score = 157 bits (398), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 93/281 (33%), Positives = 157/281 (55%), Gaps = 10/281 (3%)
Query: 12 PDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGS 71
P ++ D G+ +C + G V+ ++VID EWR F++E+ G +R GGP ++
Sbjct: 29 PQDKIVYDTAHGEYVCQDTGEVIEEKVIDERPEWRAFTSEERG-RRARTGGPVTATVHDM 87
Query: 72 DLSTMIGPGRGDAS--------FDGFGMSKYQNR-RTMNSSDRALLNAIREINSMADRIN 122
+T I DA+ + + K+Q R R + S +R L A+ E++ ++D +N
Sbjct: 88 GFATTIDYTDRDAAGRRLTEKKHELVKLRKWQARTRIITSVERNLAQAMNELDRLSDILN 147
Query: 123 LTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKK 182
L + + A +++ + ++GRS ++I +A +Y+ACR+ VPR+ EI +++++K
Sbjct: 148 LPSYVKEEAARIYRNAVEKGIVRGRSIESIIAATIYLACREMKVPRSLDEITRHTRVNRK 207
Query: 183 EIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRS 242
EI RC++L+L+ L V D++ R L LP K A I KA E + G+
Sbjct: 208 EIARCYRLLLRELRIKVATTDPVDYVPRIVHGLGLPGQAVKIAIEIINKAKEQGVTGGKD 267
Query: 243 PISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
P +AAAA+Y+A++ +KR+QKEI +AGV EVT+R YK
Sbjct: 268 PAGLAAAAVYIAAEQLGEKRTQKEIAHVAGVTEVTVRNRYK 308
Score = 45.8 bits (107), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 41/78 (52%)
Query: 208 MSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEI 267
+ R L+LP+ V++ A I R AVE IV GRS S+ AA IY+A + RS EI
Sbjct: 139 LDRLSDILNLPSYVKEEAARIYRNAVEKGIVRGRSIESIIAATIYLACREMKVPRSLDEI 198
Query: 268 GDIAGVAEVTIRQSYKLM 285
V I + Y+L+
Sbjct: 199 TRHTRVNRKEIARCYRLL 216
>gi|448301022|ref|ZP_21491017.1| Transcription factor TFIIB cyclin-related protein [Natronorubrum
tibetense GA33]
gi|445584536|gb|ELY38851.1| Transcription factor TFIIB cyclin-related protein [Natronorubrum
tibetense GA33]
Length = 321
Score = 157 bits (397), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 94/286 (32%), Positives = 155/286 (54%), Gaps = 11/286 (3%)
Query: 8 CYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPL 67
C E + L+ + C +CGL++ + ID G EWR F + SRVG P
Sbjct: 27 CPECDSSSLVRSADESEVSCEDCGLILEEETIDRGPEWRAFDQSERD-SKSRVGAPTTQT 85
Query: 68 LNGSDLSTMIGPGRGDASFDGFG---------MSKYQNR-RTMNSSDRALLNAIREINSM 117
++ L+T I DA + K+Q R RT ++ +R L A+ E + M
Sbjct: 86 MHDKGLTTTIDWKNKDAYGRSLSSDKRSQMNRLRKWQERIRTKDAGERNLQFALSETDRM 145
Query: 118 ADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVS 177
A + + +++ + A+ L+++ D ++GRS + +A++ LY ACR EG+PR+ E+ AVS
Sbjct: 146 ASALGVPRSVREVASVLYRRALDEDLIRGRSIEGVATSTLYAACRMEGIPRSLDEVAAVS 205
Query: 178 KISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDI 237
++ + EIGR ++ I + L ++ + ++ RFCS LSL VQ A I E +
Sbjct: 206 RVERMEIGRTYRYISQELSLEMEPVDPKKYVPRFCSELSLSEEVQAKANEIIDTTAEKGM 265
Query: 238 VPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
+ G+SP AAAAIY ++ ++K++Q+E+ D+A V EVTIR Y+
Sbjct: 266 LSGKSPTGYAAAAIYASALLCNEKKTQREVADVAQVTEVTIRNRYQ 311
>gi|448322082|ref|ZP_21511555.1| Transcription factor TFIIB cyclin-related protein [Natronococcus
amylolyticus DSM 10524]
gi|445602070|gb|ELY56050.1| Transcription factor TFIIB cyclin-related protein [Natronococcus
amylolyticus DSM 10524]
Length = 321
Score = 157 bits (397), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 98/286 (34%), Positives = 158/286 (55%), Gaps = 11/286 (3%)
Query: 8 CYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPL 67
C E L+ + C +CGL++ + ID G EWR F N+ SRVG P
Sbjct: 27 CPECDSTALVRSSDGSEVSCEDCGLILEEGGIDHGPEWRAF-NQSERDSKSRVGAPTTQT 85
Query: 68 LNGSDLSTMI------GPGRGDASFDGFGMS---KYQNR-RTMNSSDRALLNAIREINSM 117
++ L+T I GR +S MS K+Q R RT ++ +R L A+ E + M
Sbjct: 86 MHDKGLTTTIDWKNKDAYGRSLSSEKRNQMSRLRKWQERIRTKDAGERNLQFALSETDRM 145
Query: 118 ADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVS 177
A + + +++ + A+ L+++ D ++GRS + +A++ LY ACR EG+PR+ E+ AVS
Sbjct: 146 ASALGVPRSVREVASVLYRRALDEDLIRGRSIEGVATSTLYAACRMEGIPRSLDEVAAVS 205
Query: 178 KISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDI 237
++ + EIGR ++ I + L ++ + ++ RFCS L LP VQ A I E +
Sbjct: 206 RVDRMEIGRTYRYISQELGLEMEPVDPKKYVPRFCSELDLPEEVQLKANEIINTTAEQGM 265
Query: 238 VPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
+ G+SP AAAAIY ++ ++K++Q+E+ D+A V EVTIR Y+
Sbjct: 266 LSGKSPTGYAAAAIYASALLCNEKKTQREVADVAQVTEVTIRNRYQ 311
>gi|148508281|gb|ABQ76065.1| transcription initiation factor TFB [uncultured haloarchaeon]
Length = 380
Score = 157 bits (397), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 92/279 (32%), Positives = 153/279 (54%), Gaps = 11/279 (3%)
Query: 24 DQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLSTMIGPGRGD 83
+ ICS CGLV+ + ID G EWR F N K SRVG P L++ LST IG D
Sbjct: 100 ETICSACGLVITEDEIDRGPEWRGF-NAKERNQKSRVGAPTTALMHDKGLSTNIGWQNKD 158
Query: 84 ASFDGFGMSK---------YQNR-RTMNSSDRALLNAIREINSMADRINLTKTIVDRANN 133
A K + R RT +S DR L +A+ EI+ M+ +++ +T + A+
Sbjct: 159 AYGQSVSAEKRRKLKRLRTWNERIRTQDSKDRNLKHALGEIDRMSSALDIHETTRETASM 218
Query: 134 LFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGRCFKLILK 193
++++ D L GRS + +A+A LY A R +GV R+ E+ +VS++ EI R ++ I++
Sbjct: 219 IYRRALDADLLPGRSIEGVATAVLYAASRIDGVARSIDELASVSRVPALEIKRTYRYIIR 278
Query: 194 ALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYM 253
L+ + +++ RF S + + ++ A + ++A E + G+ P+ +AA+A+Y
Sbjct: 279 ELDLQIPPTNPIEYIGRFASAIECNDETERRARALTQQATEKGVHSGKHPVGIAASALYA 338
Query: 254 ASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKL 292
A Q +D+ +Q EI + A V+EVTIR Y+ + A ++
Sbjct: 339 AGQLCNDRLTQSEISNAADVSEVTIRNRYREILEAAEEV 377
>gi|448629133|ref|ZP_21672532.1| transcription initiation factor IIB [Haloarcula vallismortis ATCC
29715]
gi|445757699|gb|EMA09040.1| transcription initiation factor IIB [Haloarcula vallismortis ATCC
29715]
Length = 324
Score = 157 bits (397), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 96/289 (33%), Positives = 156/289 (53%), Gaps = 11/289 (3%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLST 75
L+ D G+ +C +CGLVV + ID G EWR F + K + SRVG P +++ LST
Sbjct: 37 LLSDSERGETVCEDCGLVVEEDEIDPGPEWRAF-DSKEKDEKSRVGAPTTNMMHDKGLST 95
Query: 76 MIGPGRGDA---SFDGFGMSKYQNRRTMN-------SSDRALLNAIREINSMADRINLTK 125
IG DA S K Q RT N S +R L A+ EI+ MA + L +
Sbjct: 96 NIGWQDKDAYGNSLSSRQREKMQRLRTWNERFRTRDSKERNLKQALGEIDRMASALGLPE 155
Query: 126 TIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIG 185
+ + A+ ++++ D L GRS + +++A LY A RQ G PR+ EI VS++ K EI
Sbjct: 156 NVRETASVIYRRALDEDLLPGRSIEGVSTASLYAAARQAGTPRSLDEIAGVSRVEKDEIA 215
Query: 186 RCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPIS 245
R ++ +++ L + ++ RF S+L L V++ A + + A + + G+SP+
Sbjct: 216 RTYRYVVRELSLEIQPADPESYVPRFASDLDLSEEVERRARQLLQNAKQEGVHSGKSPVG 275
Query: 246 VAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKLFP 294
+AAAA+Y AS +++K +Q ++ ++A ++EVTIR Y + + P
Sbjct: 276 LAAAAVYAASLLTNEKVTQSQVSEVANISEVTIRNRYHELLEAEDNIHP 324
>gi|110669282|ref|YP_659093.1| transcription initiation factor TFB [Haloquadratum walsbyi DSM
16790]
gi|109627029|emb|CAJ53505.1| transcription initiation factor TFB [Haloquadratum walsbyi DSM
16790]
Length = 375
Score = 157 bits (397), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 92/279 (32%), Positives = 153/279 (54%), Gaps = 11/279 (3%)
Query: 24 DQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLSTMIGPGRGD 83
+ ICS CGLV+ + ID G EWR F N K SRVG P L++ LST IG D
Sbjct: 95 ETICSACGLVITEDEIDRGPEWRGF-NAKERNQKSRVGAPTTALMHDKGLSTNIGWQNKD 153
Query: 84 ASFDGFGMSK---------YQNR-RTMNSSDRALLNAIREINSMADRINLTKTIVDRANN 133
A K + R RT +S DR L +A+ EI+ M+ +++ +T + A+
Sbjct: 154 AYGQSVSAEKRRKLKRLRTWNERIRTQDSKDRNLKHALGEIDRMSSALDIHETTRETASM 213
Query: 134 LFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGRCFKLILK 193
++++ D L GRS + +A+A LY A R +GV R+ E+ +VS++ EI R ++ I++
Sbjct: 214 IYRRALDADLLPGRSIEGVATAVLYAASRIDGVARSIDELASVSRVPALEIKRTYRYIIR 273
Query: 194 ALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYM 253
L+ + +++ RF S + + ++ A + ++A E + G+ P+ +AA+A+Y
Sbjct: 274 ELDLQIPPTNPIEYIGRFASAIECNDETERRARALTQQATEKGVHSGKHPVGIAASALYA 333
Query: 254 ASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKL 292
A Q +D+ +Q EI + A V+EVTIR Y+ + A ++
Sbjct: 334 AGQLCNDRLTQSEISNAADVSEVTIRNRYREILEAAEEV 372
>gi|55378144|ref|YP_135994.1| transcription initiation factor IIB [Haloarcula marismortui ATCC
43049]
gi|448636768|ref|ZP_21675216.1| transcription initiation factor IIB [Haloarcula sinaiiensis ATCC
33800]
gi|448648512|ref|ZP_21679643.1| transcription initiation factor IIB [Haloarcula californiae ATCC
33799]
gi|448685471|ref|ZP_21693463.1| transcription initiation factor IIB [Haloarcula japonica DSM 6131]
gi|55230869|gb|AAV46288.1| transcription initiation factor IIB [Haloarcula marismortui ATCC
43049]
gi|445765074|gb|EMA16213.1| transcription initiation factor IIB [Haloarcula sinaiiensis ATCC
33800]
gi|445775613|gb|EMA26623.1| transcription initiation factor IIB [Haloarcula californiae ATCC
33799]
gi|445782082|gb|EMA32933.1| transcription initiation factor IIB [Haloarcula japonica DSM 6131]
Length = 324
Score = 157 bits (397), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 96/289 (33%), Positives = 156/289 (53%), Gaps = 11/289 (3%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLST 75
L+ D G+ +C +CGLVV + ID G EWR F + K + SRVG P +++ LST
Sbjct: 37 LLSDSERGETVCEDCGLVVEEDEIDPGPEWRAF-DSKEKDEKSRVGAPTTNMMHDKGLST 95
Query: 76 MIGPGRGDA---SFDGFGMSKYQNRRTMN-------SSDRALLNAIREINSMADRINLTK 125
IG DA S K Q RT N S +R L A+ EI+ MA + L +
Sbjct: 96 NIGWQDKDAYGNSLSSRQREKMQRLRTWNERFRTRDSKERNLKQALGEIDRMASALGLPE 155
Query: 126 TIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIG 185
+ + A+ ++++ D L GRS + +++A LY A RQ G PR+ EI VS++ K EI
Sbjct: 156 NVRETASVIYRRALDEDLLPGRSIEGVSTASLYAAARQAGTPRSLDEIAGVSRVEKDEIA 215
Query: 186 RCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPIS 245
R ++ +++ L + ++ RF S+L L V++ A + + A + + G+SP+
Sbjct: 216 RTYRYVVRELSLEIQPADPESYVPRFASDLDLSEEVERRARQLLQNAKQEGVHSGKSPVG 275
Query: 246 VAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKLFP 294
+AAAA+Y AS +++K +Q ++ ++A ++EVTIR Y + + P
Sbjct: 276 LAAAAVYAASLLTNEKVTQSQVSEVANISEVTIRNRYHELLEAEDNIHP 324
>gi|407464963|ref|YP_006775845.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus sp. AR2]
gi|407048151|gb|AFS82903.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus sp. AR2]
Length = 306
Score = 157 bits (397), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 82/278 (29%), Positives = 153/278 (55%), Gaps = 11/278 (3%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLST 75
L+ D G+ C +CG V+ ++ + G EWR+F + G DP+R G P + +++ LST
Sbjct: 20 LLTDEVTGENFCGKCGYVITEKSQESGPEWRSFQKD-GGADPARTGAPSSLMIHDMGLST 78
Query: 76 MIGPGRGDASFDGFGMS---KYQNRRTMNSS-------DRALLNAIREINSMADRINLTK 125
+I P DAS S + RT +S DR L A+ ++N + D++++
Sbjct: 79 VINPLNKDASGKPLSTSMKSTIERLRTWDSRSQVHAPVDRNLRQALSDLNKLKDKVSIPA 138
Query: 126 TIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIG 185
++++A ++++ + K ++GRS A+ +A LY ACR PRT K++ + + +K+I
Sbjct: 139 NVLEKAAYIYRKALEKKLVRGRSISAMIAASLYAACRDTETPRTLKDVADAANVKRKDIA 198
Query: 186 RCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPIS 245
RC++L+ LE + ++ + ++R S L + ++ A + ++A E G+ P+
Sbjct: 199 RCYRLLHHELELKMPVVDSIQCIARISSKLEISEKTKRYAVKVLKEAQERKESAGKDPMG 258
Query: 246 VAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
+AA A+Y++ + +Q+++ + AGV EVTIR YK
Sbjct: 259 LAATALYLSCVKNGVSITQRDLAEAAGVTEVTIRNRYK 296
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 47/79 (59%)
Query: 208 MSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEI 267
+++ +S+P V + A +I RKA+E +V GRS ++ AA++Y A + + R+ K++
Sbjct: 127 LNKLKDKVSIPANVLEKAAYIYRKALEKKLVRGRSISAMIAASLYAACRDTETPRTLKDV 186
Query: 268 GDIAGVAEVTIRQSYKLMY 286
D A V I + Y+L++
Sbjct: 187 ADAANVKRKDIARCYRLLH 205
>gi|448439550|ref|ZP_21588114.1| transcription factor TFIIB cyclin-related protein [Halorubrum
saccharovorum DSM 1137]
gi|445691084|gb|ELZ43279.1| transcription factor TFIIB cyclin-related protein [Halorubrum
saccharovorum DSM 1137]
Length = 346
Score = 157 bits (396), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 95/264 (35%), Positives = 151/264 (57%), Gaps = 11/264 (4%)
Query: 26 ICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLSTMIGPGRGDAS 85
+C +CGLV+ +R ID G EWR F N SRVG P ++ L+T I DA
Sbjct: 42 VCEDCGLVLDERNIDRGPEWRAF-NHSERQSKSRVGAPITETMHDKGLTTTIDWKDKDAY 100
Query: 86 FDGFG---------MSKYQNR-RTMNSSDRALLNAIREINSMADRINLTKTIVDRANNLF 135
+ K+Q R RT ++ +R L A+ EI+ MA + + +++ + A+ ++
Sbjct: 101 GRSLSSEKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDRMASALGVPRSVREVASVIY 160
Query: 136 KQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGRCFKLILKAL 195
++ + ++GRS + +++A LY ACRQEG+PR+ E+ VS++ +KEIGR ++ I + L
Sbjct: 161 RRALNEDLIRGRSIEGVSTAALYAACRQEGIPRSLDEVADVSRVPQKEIGRTYRYISQEL 220
Query: 196 ETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMAS 255
+ + F+ RF S+L L VQ AT I + E ++ G+SP AAAAIY AS
Sbjct: 221 GLELKPVDPKQFVPRFASSLELSEEVQSKATEIIDVSAEQGLLSGKSPTGFAAAAIYAAS 280
Query: 256 QASSDKRSQKEIGDIAGVAEVTIR 279
++K++Q+E+ D+A V EVTIR
Sbjct: 281 LLCNEKKTQREVADVAQVTEVTIR 304
Score = 47.0 bits (110), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 45/78 (57%)
Query: 208 MSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEI 267
+ R S L +P V++ A+ I R+A+ D++ GRS V+ AA+Y A + RS E+
Sbjct: 139 IDRMASALGVPRSVREVASVIYRRALNEDLIRGRSIEGVSTAALYAACRQEGIPRSLDEV 198
Query: 268 GDIAGVAEVTIRQSYKLM 285
D++ V + I ++Y+ +
Sbjct: 199 ADVSRVPQKEIGRTYRYI 216
>gi|289937651|ref|YP_003482253.1| Transcription factor TFIIB cyclin-related protein [Natrialba
magadii ATCC 43099]
gi|448283863|ref|ZP_21475128.1| Transcription factor TFIIB cyclin-related protein [Natrialba
magadii ATCC 43099]
gi|289533342|gb|ADD07691.1| Transcription factor TFIIB cyclin-related protein [Natrialba
magadii ATCC 43099]
gi|445571958|gb|ELY26500.1| Transcription factor TFIIB cyclin-related protein [Natrialba
magadii ATCC 43099]
Length = 321
Score = 157 bits (396), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 94/267 (35%), Positives = 148/267 (55%), Gaps = 11/267 (4%)
Query: 27 CSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLSTMIGPGRGDASF 86
C +CGL++ + ID G EWR F N SRVG P ++ L+T I DA
Sbjct: 46 CEDCGLILEEEAIDRGPEWRAF-NAAERDSKSRVGAPTTQTMHDKGLTTTIDWKNQDAYG 104
Query: 87 DGFG---------MSKYQNR-RTMNSSDRALLNAIREINSMADRINLTKTIVDRANNLFK 136
+ K+Q R RT ++ +R L A+ E + MA + + +++ + A+ L++
Sbjct: 105 RSLSSEKRSQMNRLRKWQERIRTKDAGERNLQFALSETDRMASAMGVPRSVREVASVLYR 164
Query: 137 QVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGRCFKLILKALE 196
+ + ++GRS + +A++ LY ACR EG+PR+ EI AVS++ + EIGR ++ I K L
Sbjct: 165 RALEEDLIRGRSIEGVATSTLYAACRMEGIPRSLDEIAAVSRVERMEIGRTYRYISKELG 224
Query: 197 TSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQ 256
+ + ++ RFCS L LP+ VQ A I E ++ G+SP AAAAIY A+
Sbjct: 225 LEMQPVDPKKYVPRFCSELELPDEVQSKANEIIDTTAEKGMLSGKSPTGYAAAAIYAAAL 284
Query: 257 ASSDKRSQKEIGDIAGVAEVTIRQSYK 283
+ K++Q+E+ D+A V EVTIR Y+
Sbjct: 285 LCNKKKTQREVADVAQVTEVTIRNRYQ 311
>gi|448589961|ref|ZP_21650020.1| transcription initiation factor TFB [Haloferax elongans ATCC
BAA-1513]
gi|445735076|gb|ELZ86629.1| transcription initiation factor TFB [Haloferax elongans ATCC
BAA-1513]
Length = 325
Score = 157 bits (396), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 94/271 (34%), Positives = 152/271 (56%), Gaps = 11/271 (4%)
Query: 23 GDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLSTMIGPGRG 82
G+ I E G+V+ + ID G EWR F N + SRVG P ++ L+T I
Sbjct: 46 GELIHEETGIVLEEDRIDPGPEWRAF-NHSERQEKSRVGAPTTKTMHDKGLTTTIDWKDK 104
Query: 83 DASFDGFG---------MSKYQNR-RTMNSSDRALLNAIREINSMADRINLTKTIVDRAN 132
DA + K+Q R RT ++ +R L A+ E++ MA + + +++ + A+
Sbjct: 105 DAYGRSISSRKRSQMHRLRKWQERIRTKDAGERNLQFALSEVDRMASALGVPRSVREVAS 164
Query: 133 NLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGRCFKLIL 192
++++ D ++GRS + +A+ACLY ACR+EG+PR+ +EI VS++ +KEIGR ++ +
Sbjct: 165 VIYRRALDEDLIRGRSIEGVATACLYAACRKEGIPRSLEEIAEVSRVERKEIGRTYRYVS 224
Query: 193 KALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIY 252
+ L + + ++ RF S L L VQ A I E ++ G+SP AAAAIY
Sbjct: 225 QELGLEMRPVDPKKYVPRFSSELDLSKEVQSKANEIIETTAEQGLLSGKSPTGYAAAAIY 284
Query: 253 MASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
AS ++K++Q+E+ D+A V EVTIR Y+
Sbjct: 285 AASLLCNEKKTQREVADVAQVTEVTIRNRYQ 315
>gi|189204392|ref|XP_001938531.1| transcription initiation factor IIB [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187985630|gb|EDU51118.1| transcription initiation factor IIB [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 338
Score = 157 bits (396), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 101/320 (31%), Positives = 157/320 (49%), Gaps = 39/320 (12%)
Query: 9 YEHPDAPLIEDYRAGDQ----ICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPE 64
YE AP+ +D D IC +C + V FS ++ DPSR+G
Sbjct: 16 YEAAPAPVKDDEWQEDLNVALICPDCKENPPNLV-------EEFSADQGNDDPSRIGDAA 68
Query: 65 NPLLNGSDLSTMIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADRINLT 124
NPLL+GS L T IG GD +S+ N+ + ++AL A +I ++ D N++
Sbjct: 69 NPLLHGSQLQTEIG--FGDGGMRVRDLSRAHNKSNHDKVNKALQAAYGQITALCDSQNIS 126
Query: 125 KTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEI 184
+ + A LFK D K KG+S DAI + C++IACR+ R+F+EI ++ +SKKE+
Sbjct: 127 RPTAETAKMLFKMTDDAKLFKGKSQDAIIAGCIFIACRKHDQQRSFREIFKMTNVSKKEV 186
Query: 185 GRCFKLILKALETS-----------------VDLI---------TTGDFMSRFCSNLSLP 218
GR FK++ ++ S V+L+ + M R C+ L+L
Sbjct: 187 GRTFKVLEAFIQKSQNNGGPSIAGNGAVIDTVNLLNQKGGTTATSASSLMPRACAKLALG 246
Query: 219 NMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTI 278
VQ A A + + GRSP+S+A A +Y+ S +S KEIG V++ TI
Sbjct: 247 TQVQMVAEECADQVAHYGVAAGRSPLSIAGACLYLVSHLMGQPKSPKEIGLAVEVSDGTI 306
Query: 279 RQSYKLMYPHASKLFPQDFV 298
R +YKLM+ K+ +++
Sbjct: 307 RTAYKLMHMEQDKIIKPEWI 326
>gi|385804846|ref|YP_005841246.1| transcription initiation factor TFB [Haloquadratum walsbyi C23]
gi|339730338|emb|CCC41667.1| transcription initiation factor TFB [Haloquadratum walsbyi C23]
Length = 374
Score = 157 bits (396), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 92/279 (32%), Positives = 152/279 (54%), Gaps = 11/279 (3%)
Query: 24 DQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLSTMIGPGRGD 83
+ ICS CGLV+ + ID G EWR F N K SRVG P L++ LST IG D
Sbjct: 94 ETICSACGLVITEDEIDRGPEWRGF-NAKERNQKSRVGAPTTALMHDKGLSTNIGWQNKD 152
Query: 84 ASFDGFGMSK---------YQNR-RTMNSSDRALLNAIREINSMADRINLTKTIVDRANN 133
A K + R RT +S DR L +A+ EI+ M+ + + +T + A+
Sbjct: 153 AYGQSVSAEKRRKLKRLRTWNERIRTQDSKDRNLKHALGEIDRMSSALGIHETTRETASM 212
Query: 134 LFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGRCFKLILK 193
++++ D L GRS + +A+A LY A R +GV R+ E+ +VS++ EI R ++ I++
Sbjct: 213 IYRRALDADLLPGRSIEGVATAVLYAASRIDGVARSIDELASVSRVPALEIKRTYRYIIR 272
Query: 194 ALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYM 253
L+ + +++ RF S + + ++ A + ++A E + G+ P+ +AA+A+Y
Sbjct: 273 ELDLQIPPTNPIEYIGRFASAIECNDETERRARALTQQATEKGVHSGKHPVGIAASALYA 332
Query: 254 ASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKL 292
A Q +D+ +Q EI + A V+EVTIR Y+ + A ++
Sbjct: 333 AGQLCNDRLTQSEISNAADVSEVTIRNRYREILEAAEEV 371
>gi|386875751|ref|ZP_10117910.1| putative transcription initiation factor IIB [Candidatus
Nitrosopumilus salaria BD31]
gi|386806507|gb|EIJ65967.1| putative transcription initiation factor IIB [Candidatus
Nitrosopumilus salaria BD31]
Length = 304
Score = 157 bits (396), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 82/278 (29%), Positives = 153/278 (55%), Gaps = 11/278 (3%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLST 75
++ D G+Q C +CG V+ ++ + G EWR+F + G DP+R G P + +++ LST
Sbjct: 18 ILVDEVTGEQFCGKCGYVITEKSQESGPEWRSFQKD-GGADPARTGAPSSLMIHDMGLST 76
Query: 76 MIGPGRGDASFDGFGMS---KYQNRRTMNSS-------DRALLNAIREINSMADRINLTK 125
+I P DAS S + RT +S DR L A+ ++N + D++++
Sbjct: 77 VINPLNKDASGKPLSTSMKSTIERLRTWDSRSQVHAPVDRNLRQALSDLNKLKDKVSVPA 136
Query: 126 TIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIG 185
++++A ++++ + K ++GRS A+ +A LY ACR PRT K++ + + +K+I
Sbjct: 137 NVLEKAAYIYRKALEKKLVRGRSISAMIAASLYAACRDTETPRTLKDVSDAANVKRKDIA 196
Query: 186 RCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPIS 245
RC++L+ LE + ++ + ++R S L + ++ A + + A E G+ P+
Sbjct: 197 RCYRLLHHELELKMPVVDSIQCIARISSKLEISEKTKRYAVKVLKDAQERKESAGKDPMG 256
Query: 246 VAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
+AA A+Y++ + +Q+++ + AGV EVTIR YK
Sbjct: 257 LAATALYLSCVKNGVSITQRDLAEAAGVTEVTIRNRYK 294
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 47/79 (59%)
Query: 208 MSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEI 267
+++ +S+P V + A +I RKA+E +V GRS ++ AA++Y A + + R+ K++
Sbjct: 125 LNKLKDKVSVPANVLEKAAYIYRKALEKKLVRGRSISAMIAASLYAACRDTETPRTLKDV 184
Query: 268 GDIAGVAEVTIRQSYKLMY 286
D A V I + Y+L++
Sbjct: 185 SDAANVKRKDIARCYRLLH 203
>gi|374633244|ref|ZP_09705611.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Metallosphaera yellowstonensis
MK1]
gi|373524728|gb|EHP69605.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Metallosphaera yellowstonensis
MK1]
Length = 306
Score = 157 bits (396), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 97/282 (34%), Positives = 157/282 (55%), Gaps = 11/282 (3%)
Query: 12 PDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGS 71
P +I D G+ ICSE G V+ +R++D G EWR F+ E+ SRVGGP N ++
Sbjct: 13 PPDKIIFDADRGEYICSETGEVIEERIVDQGPEWRAFTPEEKE-KRSRVGGPLNQTIHDR 71
Query: 72 DLSTMIGPGRGDA---------SFDGFGMSKYQNR-RTMNSSDRALLNAIREINSMADRI 121
LST+I DA + K+Q R R +S DR L A+ E+ + + +
Sbjct: 72 GLSTLIDWKDKDAIGRNLDPKRRLEVLRWRKWQIRARIQSSIDRNLAQAMNELERIGNLL 131
Query: 122 NLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISK 181
L K++ D ++++ + ++GRS +++ +A +Y +CR+ + RT EI +K ++
Sbjct: 132 GLPKSVKDEGALIYRKAVEKGLVRGRSIESVVAAAIYASCRRMKIARTLDEIAQYTKANR 191
Query: 182 KEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGR 241
KE+ RC++L+L+ L V + D+++R S L L K A I KA + + G+
Sbjct: 192 KEVARCYRLLLRELNVDVPVSDPKDYVTRIGSLLGLSGASMKLAAEILEKAKNVGLTAGK 251
Query: 242 SPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
P +AAAAIY+A+ + ++R+QKEI +AGV EVT+R YK
Sbjct: 252 DPAGLAAAAIYIAALLNEERRTQKEIAQVAGVTEVTVRNRYK 293
Score = 44.7 bits (104), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 53/106 (50%), Gaps = 3/106 (2%)
Query: 183 EIGRCFKLILKA-LETSVD--LITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVP 239
E+ R K ++A +++S+D L + + R + L LP V+ I RKAVE +V
Sbjct: 96 EVLRWRKWQIRARIQSSIDRNLAQAMNELERIGNLLGLPKSVKDEGALIYRKAVEKGLVR 155
Query: 240 GRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLM 285
GRS SV AAAIY + + R+ EI + + Y+L+
Sbjct: 156 GRSIESVVAAAIYASCRRMKIARTLDEIAQYTKANRKEVARCYRLL 201
>gi|448411918|ref|ZP_21576274.1| transcription factor TFIIB cyclin-related protein [Halosimplex
carlsbadense 2-9-1]
gi|445669852|gb|ELZ22460.1| transcription factor TFIIB cyclin-related protein [Halosimplex
carlsbadense 2-9-1]
Length = 326
Score = 156 bits (395), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 97/277 (35%), Positives = 154/277 (55%), Gaps = 11/277 (3%)
Query: 19 DYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLSTMIG 78
D G+ +C+ECGLVV + ID G EWR F N + SRVG P +++ LST IG
Sbjct: 43 DTEHGETVCAECGLVVEEDEIDRGPEWRAF-NPSEKDEKSRVGAPTTNMMHDKGLSTNIG 101
Query: 79 PGRGDA---SFDGFGMSKYQNRRTMN-------SSDRALLNAIREINSMADRINLTKTIV 128
DA S K Q RT N S +R L A+ EI+ MA + L KT+
Sbjct: 102 WQNKDAYGNSLSSNQRQKMQRLRTWNERFRTRDSKERNLKQALGEIDRMASALGLPKTVR 161
Query: 129 DRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGRCF 188
+ A+ ++++ + L GRS + +A+A LY A RQ PR+ E+ AVS++ K E+ R +
Sbjct: 162 ETASVIYRRALEENLLPGRSIEGVATASLYAAARQANTPRSLDEMTAVSRVEKMELTRTY 221
Query: 189 KLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAA 248
+ +++ L + ++ RF S+L L + ++ A + A + I+ G+SP+ +AA
Sbjct: 222 RYVVRELNLEIKPADPESYLPRFVSDLELSDDTERRARELIVSARDQGILSGKSPVGLAA 281
Query: 249 AAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLM 285
AA+Y A+ +++K +Q E+ D+A ++EVTIR YK +
Sbjct: 282 AAVYAAALLTNEKVTQSEVSDVANISEVTIRNRYKEL 318
>gi|146304955|ref|YP_001192271.1| transcription initiation factor IIB [Metallosphaera sedula DSM
5348]
gi|145703205|gb|ABP96347.1| Transcription initiation factor IIB (TFIIB) [Metallosphaera sedula
DSM 5348]
Length = 305
Score = 156 bits (395), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 97/282 (34%), Positives = 157/282 (55%), Gaps = 11/282 (3%)
Query: 12 PDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGS 71
P +I D G+ ICSE G V+ +R++D G EWR F+ E+ SRVGGP N ++
Sbjct: 12 PPDKIIFDADRGEYICSETGEVIEERIVDQGPEWRAFTPEEKE-KRSRVGGPLNQTIHDR 70
Query: 72 DLSTMIGPGRGDA---------SFDGFGMSKYQNR-RTMNSSDRALLNAIREINSMADRI 121
LST+I DA + K+Q R R +S DR L A+ E+ + + +
Sbjct: 71 GLSTLIDWKDKDAIGRNLDPKRRLEVLRWRKWQIRARIQSSIDRNLAQAMNELERIGNLL 130
Query: 122 NLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISK 181
L K++ D ++++ + ++GRS +++ +A +Y +CR+ + RT EI +K ++
Sbjct: 131 GLPKSVKDEGALIYRKAVEKGLVRGRSIESVVAAAIYASCRRMKIARTLDEIAQYTKANR 190
Query: 182 KEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGR 241
KE+ RC++L+L+ L V + D+++R S L L K A I KA + + G+
Sbjct: 191 KEVARCYRLLLRELNVDVPVSDPKDYVTRIGSLLGLSGASMKLAAEILEKAKNVGLTAGK 250
Query: 242 SPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
P +AAAAIY+A+ + ++R+QKEI +AGV EVT+R YK
Sbjct: 251 DPAGLAAAAIYIAALLNEERRTQKEIAQVAGVTEVTVRNRYK 292
Score = 44.7 bits (104), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 53/106 (50%), Gaps = 3/106 (2%)
Query: 183 EIGRCFKLILKA-LETSVD--LITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVP 239
E+ R K ++A +++S+D L + + R + L LP V+ I RKAVE +V
Sbjct: 95 EVLRWRKWQIRARIQSSIDRNLAQAMNELERIGNLLGLPKSVKDEGALIYRKAVEKGLVR 154
Query: 240 GRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLM 285
GRS SV AAAIY + + R+ EI + + Y+L+
Sbjct: 155 GRSIESVVAAAIYASCRRMKIARTLDEIAQYTKANRKEVARCYRLL 200
>gi|433421758|ref|ZP_20405837.1| transcription initiation factor TFB [Haloferax sp. BAB2207]
gi|432198809|gb|ELK55052.1| transcription initiation factor TFB [Haloferax sp. BAB2207]
Length = 318
Score = 156 bits (394), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 100/287 (34%), Positives = 154/287 (53%), Gaps = 13/287 (4%)
Query: 7 CCYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTF-SNEKSGVDPSRVGGPEN 65
C E L+ D G+ +C +CGLVV + ID G EWR F S+EK + SRVG P
Sbjct: 21 TCPECGSESLVSDTEHGETVCDDCGLVVEEDEIDHGPEWRAFNSSEKD--EKSRVGAPTT 78
Query: 66 PLLNGSDLSTMIGPGRGDA---SFDGFGMSKYQNRRTMN-------SSDRALLNAIREIN 115
+++ LST IG DA S K Q RT N S +R L A+ EI+
Sbjct: 79 NMMHDKGLSTNIGWQNKDAYGRSLSSRQREKMQRLRTWNERFRTRDSKERNLKQALGEID 138
Query: 116 SMADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICA 175
MA + L + + A+ ++++ D L GRS + +A++ LY A R G PR+ EI +
Sbjct: 139 RMASALGLPDNVRETASVIYRRALDDDLLPGRSIEGVATSALYAAARMAGTPRSLDEITS 198
Query: 176 VSKISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVEL 235
VS++ K EI R ++ +++ L + ++ RF S L L + ++ A + R A E
Sbjct: 199 VSRVEKDEIARTYRYVVRELSLEIKPADPEQYVPRFASELGLSDEAERQARQLLRDAKET 258
Query: 236 DIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSY 282
I G+SP+ +AAAA+Y A+ +++K +Q + D+A ++EVTIR Y
Sbjct: 259 GIHSGKSPVGLAAAAVYAAALLTNEKTTQAAVSDVADISEVTIRNRY 305
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 56/96 (58%), Gaps = 1/96 (1%)
Query: 208 MSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEI 267
+ R S L LP+ V++ A+ I R+A++ D++PGRS VA +A+Y A++ + RS EI
Sbjct: 137 IDRMASALGLPDNVRETASVIYRRALDDDLLPGRSIEGVATSALYAAARMAGTPRSLDEI 196
Query: 268 GDIAGVAEVTIRQSYKLMYPHAS-KLFPQDFVFHTP 302
++ V + I ++Y+ + S ++ P D + P
Sbjct: 197 TSVSRVEKDEIARTYRYVVRELSLEIKPADPEQYVP 232
>gi|399575166|ref|ZP_10768924.1| hypothetical protein HSB1_09630 [Halogranum salarium B-1]
gi|399239434|gb|EJN60360.1| hypothetical protein HSB1_09630 [Halogranum salarium B-1]
Length = 329
Score = 156 bits (394), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 97/274 (35%), Positives = 152/274 (55%), Gaps = 11/274 (4%)
Query: 19 DYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLSTMIG 78
D G+ +CS+CGLVV + ID G EWR F + K SRVG P +++ LST IG
Sbjct: 44 DTAHGETVCSDCGLVVDEDEIDHGPEWRAF-DSKEKDQKSRVGAPTTNMMHDKGLSTNIG 102
Query: 79 PGRGDA---SFDGFGMSKYQNRRTMN-------SSDRALLNAIREINSMADRINLTKTIV 128
DA S K Q RT N S +R L A+ EI+ MA + L +
Sbjct: 103 WQDKDAYGNSLSSRQREKMQRLRTWNERFRTRDSKERNLKQALGEIDRMASGLGLPDNVR 162
Query: 129 DRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGRCF 188
+ A+ ++++ D L GRS + +A++ LY A RQ G PR+ EI +VS++ K EI R +
Sbjct: 163 ETASVIYRRALDDDLLPGRSIEGVATSALYAAARQAGTPRSLDEIASVSRVDKDEIARTY 222
Query: 189 KLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAA 248
+ +++ L+ + ++ RF S+L L + ++ A + + A E + G+SP+ +AA
Sbjct: 223 RYVVRELKLEIQPADPEQYVPRFASDLDLSDESERRARKLLQNAKEEGVHSGKSPVGLAA 282
Query: 249 AAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSY 282
AA+Y AS +++K +Q E+ D+A ++EVTIR Y
Sbjct: 283 AAVYAASLLTNEKVTQSEVSDVANISEVTIRNRY 316
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 49/78 (62%)
Query: 208 MSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEI 267
+ R S L LP+ V++ A+ I R+A++ D++PGRS VA +A+Y A++ + RS EI
Sbjct: 148 IDRMASGLGLPDNVRETASVIYRRALDDDLLPGRSIEGVATSALYAAARQAGTPRSLDEI 207
Query: 268 GDIAGVAEVTIRQSYKLM 285
++ V + I ++Y+ +
Sbjct: 208 ASVSRVDKDEIARTYRYV 225
>gi|386874729|ref|ZP_10116955.1| putative transcription initiation factor IIB [Candidatus
Nitrosopumilus salaria BD31]
gi|386807352|gb|EIJ66745.1| putative transcription initiation factor IIB [Candidatus
Nitrosopumilus salaria BD31]
Length = 301
Score = 156 bits (394), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 80/290 (27%), Positives = 158/290 (54%), Gaps = 11/290 (3%)
Query: 4 NKVCCYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGP 63
K C L+ D +G+ CS+CG V+ +++ + G EWR+F+ ++ G + +R G P
Sbjct: 5 TKELCPRCAQGKLVTDNESGEMFCSKCGFVITEKLQEAGPEWRSFTQDEGG-NKARAGAP 63
Query: 64 ENPLLNGSDLSTMIGPGRGDAS---FDGFGMSKYQNRRTMNSS-------DRALLNAIRE 113
+ ++ L+T+I P DAS S + RT +S DR A E
Sbjct: 64 TSLTMHDMGLATIINPVNKDASGRPLTASMKSTIERLRTWDSRSQVHEPVDRNFRQAFSE 123
Query: 114 INSMADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEI 173
+N + D++ ++ ++++A ++++ + ++GRS A+ ++ LY ACR PR K++
Sbjct: 124 LNRLKDKLAISDAVIEKAAYIYRKALEKGLVRGRSISALMASALYAACRDTATPRNLKDV 183
Query: 174 CAVSKISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAV 233
+ I +K+I RC++L++K L+ + + + ++R S + + ++ A + + A
Sbjct: 184 EEAANIKRKDIARCYRLLVKELDLKMPVTDSIQCVARIASRIGIAEKTKRYAVKVLKLAQ 243
Query: 234 ELDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
E ++ G+ P+ +AAAA+Y++ + + ++Q++I + A V EVTIR YK
Sbjct: 244 ENEVSAGKDPMGLAAAALYLSCVKNGEDKTQRDIAEAANVTEVTIRNRYK 293
Score = 43.1 bits (100), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 48/87 (55%)
Query: 208 MSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEI 267
++R L++ + V + A +I RKA+E +V GRS ++ A+A+Y A + ++ R+ K++
Sbjct: 124 LNRLKDKLAISDAVIEKAAYIYRKALEKGLVRGRSISALMASALYAACRDTATPRNLKDV 183
Query: 268 GDIAGVAEVTIRQSYKLMYPHASKLFP 294
+ A + I + Y+L+ P
Sbjct: 184 EEAANIKRKDIARCYRLLVKELDLKMP 210
>gi|292655211|ref|YP_003535108.1| transcription initiation factor TFB [Haloferax volcanii DS2]
gi|448596702|ref|ZP_21653840.1| transcription initiation factor TFB [Haloferax alexandrinus JCM
10717]
gi|291371352|gb|ADE03579.1| transcription initiation factor TFB [Haloferax volcanii DS2]
gi|445740583|gb|ELZ92088.1| transcription initiation factor TFB [Haloferax alexandrinus JCM
10717]
Length = 332
Score = 156 bits (394), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 99/287 (34%), Positives = 156/287 (54%), Gaps = 13/287 (4%)
Query: 7 CCYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTF-SNEKSGVDPSRVGGPEN 65
C E L+ D G+ +C +CGLVV + ID G EWR F S+EK + SRVG P
Sbjct: 35 TCPECGSESLVSDTEHGETVCDDCGLVVEEDEIDHGPEWRAFNSSEKD--EKSRVGAPTT 92
Query: 66 PLLNGSDLSTMIGPGRGDA---SFDGFGMSKYQNRRTMN-------SSDRALLNAIREIN 115
+++ LST IG DA S K Q RT N S +R L A+ EI+
Sbjct: 93 NMMHDKGLSTNIGWQNKDAYGRSLSSRQREKMQRLRTWNERFRTRDSKERNLKQALGEID 152
Query: 116 SMADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICA 175
MA + L + + A+ ++++ D L GRS + +A++ LY A R G PR+ EI +
Sbjct: 153 RMASALGLPDNVRETASVIYRRALDDDLLPGRSIEGVATSALYAAARMAGTPRSLDEITS 212
Query: 176 VSKISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVEL 235
VS++ K EI R ++ +++ L + ++ RF S+L L + ++ A + + A E
Sbjct: 213 VSRVEKDEIARTYRYVVRELSLEIKPADPEQYVPRFASDLGLSDESERRARQLLKNAKEQ 272
Query: 236 DIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSY 282
+ G+SP+ +AAAA+Y AS +++K +Q E+ ++A ++EVTIR Y
Sbjct: 273 GVHSGKSPVGLAAAAVYAASLLTNEKVTQNEVSEVANISEVTIRNRY 319
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 56/96 (58%), Gaps = 1/96 (1%)
Query: 208 MSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEI 267
+ R S L LP+ V++ A+ I R+A++ D++PGRS VA +A+Y A++ + RS EI
Sbjct: 151 IDRMASALGLPDNVRETASVIYRRALDDDLLPGRSIEGVATSALYAAARMAGTPRSLDEI 210
Query: 268 GDIAGVAEVTIRQSYKLMYPHAS-KLFPQDFVFHTP 302
++ V + I ++Y+ + S ++ P D + P
Sbjct: 211 TSVSRVEKDEIARTYRYVVRELSLEIKPADPEQYVP 246
>gi|448292233|ref|ZP_21482893.1| transcription initiation factor TFB [Haloferax volcanii DS2]
gi|448541523|ref|ZP_21624239.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-646]
gi|448549791|ref|ZP_21628396.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-645]
gi|448555098|ref|ZP_21631138.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-644]
gi|445573033|gb|ELY27560.1| transcription initiation factor TFB [Haloferax volcanii DS2]
gi|445707848|gb|ELZ59696.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-646]
gi|445712839|gb|ELZ64620.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-645]
gi|445717843|gb|ELZ69546.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-644]
Length = 318
Score = 156 bits (394), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 99/287 (34%), Positives = 156/287 (54%), Gaps = 13/287 (4%)
Query: 7 CCYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTF-SNEKSGVDPSRVGGPEN 65
C E L+ D G+ +C +CGLVV + ID G EWR F S+EK + SRVG P
Sbjct: 21 TCPECGSESLVSDTEHGETVCDDCGLVVEEDEIDHGPEWRAFNSSEKD--EKSRVGAPTT 78
Query: 66 PLLNGSDLSTMIGPGRGDA---SFDGFGMSKYQNRRTMN-------SSDRALLNAIREIN 115
+++ LST IG DA S K Q RT N S +R L A+ EI+
Sbjct: 79 NMMHDKGLSTNIGWQNKDAYGRSLSSRQREKMQRLRTWNERFRTRDSKERNLKQALGEID 138
Query: 116 SMADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICA 175
MA + L + + A+ ++++ D L GRS + +A++ LY A R G PR+ EI +
Sbjct: 139 RMASALGLPDNVRETASVIYRRALDDDLLPGRSIEGVATSALYAAARMAGTPRSLDEITS 198
Query: 176 VSKISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVEL 235
VS++ K EI R ++ +++ L + ++ RF S+L L + ++ A + + A E
Sbjct: 199 VSRVEKDEIARTYRYVVRELSLEIKPADPEQYVPRFASDLGLSDESERRARQLLKNAKEQ 258
Query: 236 DIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSY 282
+ G+SP+ +AAAA+Y AS +++K +Q E+ ++A ++EVTIR Y
Sbjct: 259 GVHSGKSPVGLAAAAVYAASLLTNEKVTQNEVSEVANISEVTIRNRY 305
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 56/96 (58%), Gaps = 1/96 (1%)
Query: 208 MSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEI 267
+ R S L LP+ V++ A+ I R+A++ D++PGRS VA +A+Y A++ + RS EI
Sbjct: 137 IDRMASALGLPDNVRETASVIYRRALDDDLLPGRSIEGVATSALYAAARMAGTPRSLDEI 196
Query: 268 GDIAGVAEVTIRQSYKLMYPHAS-KLFPQDFVFHTP 302
++ V + I ++Y+ + S ++ P D + P
Sbjct: 197 TSVSRVEKDEIARTYRYVVRELSLEIKPADPEQYVP 232
>gi|424811965|ref|ZP_18237205.1| transcription initiation factor IIB, TFIIB [Candidatus
Nanosalinarum sp. J07AB56]
gi|339756187|gb|EGQ39770.1| transcription initiation factor IIB, TFIIB [Candidatus
Nanosalinarum sp. J07AB56]
Length = 358
Score = 156 bits (394), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 99/284 (34%), Positives = 153/284 (53%), Gaps = 7/284 (2%)
Query: 6 VCCYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPEN 65
+ C E ED G+ +C ECG ++ + ID +E+R F NE +R G P
Sbjct: 59 LTCPECESQRFEEDSAQGELVCVECGTIIDEDRIDDSAEYRAF-NEAEREKKARAGQPLT 117
Query: 66 PLLNGSDLSTMIGPGRGDA-SFDGFGMSKY-----QNRRTMNSSDRALLNAIREINSMAD 119
+ +ST IG G G+ G ++Y ++R S DR L A+ E+NSM
Sbjct: 118 YTKHDMGVSTEIGKGSGELYKVSGEKRAQYYRLRKWHKRLTKSKDRNLGFALSELNSMIS 177
Query: 120 RINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKI 179
+NL +++ + L+++ D ++GRS ++I SA LYI R++G PRT EI S I
Sbjct: 178 NLNLPESVHEEVARLYEKAVDQGLVRGRSMESIISALLYIVARKQGTPRTLDEISDASGI 237
Query: 180 SKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVP 239
K+EIGR ++ + + L + D++ RF L L VQ A +I +A E D++
Sbjct: 238 EKREIGRAYRYVARELGLRILPAKPQDYVPRFAGKLQLSGEVQARARNILEEAREKDLLS 297
Query: 240 GRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
G+ P +AAAA+Y+A+ +KR+Q+E+ D+ GV EVTIR YK
Sbjct: 298 GKGPTGLAAAALYIAAVLEGEKRTQREVADVVGVTEVTIRNRYK 341
>gi|193083921|gb|ACF09599.1| intein-containing transcription factor TFIIB cyclin-related protein
[uncultured marine crenarchaeote KM3-34-D9]
Length = 307
Score = 155 bits (393), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 93/288 (32%), Positives = 158/288 (54%), Gaps = 12/288 (4%)
Query: 2 NINKVCCYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVG 61
N+ K C A ++ D G+ CS CG V +++ + G EWR+FSN+ G D SRVG
Sbjct: 12 NLGKQRCPACTKAKMVLDETTGELFCSVCGFVETEKITEGGPEWRSFSND--GGDRSRVG 69
Query: 62 GPENPLLNGSDLSTMIGPGRGDASFDGF--GMSKYQNR-RTMNS-------SDRALLNAI 111
+ ++ LST+IG DA+ M K R RT +S S+R L A+
Sbjct: 70 AGTSITMHDMGLSTIIGVQNKDATGKPLESSMKKSIERLRTWDSRSQAHSSSERNLRQAL 129
Query: 112 REINSMADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFK 171
E++ + D++ LT T++++A ++++ + K +KGRS + +AC+Y +CR PRT
Sbjct: 130 SEMDKLKDKLTLTDTVIEKAAYIYRKAIERKLVKGRSIHGLVAACIYASCRMTETPRTLD 189
Query: 172 EICAVSKISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARK 231
+I I +K++ R +++I + L+ + + +SR S L ++ A + K
Sbjct: 190 DIAEGINIKRKDVARSYRIIFRELDLKIPVADPVKGVSRIASLAGLGEATKRKALILLNK 249
Query: 232 AVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIR 279
A ++ +V G+ P+ +AAAA+Y+A ++ ++QKEI +GV EVTIR
Sbjct: 250 AKKIGMVAGKDPMGIAAAALYLACISTGGSKTQKEISIASGVTEVTIR 297
Score = 42.7 bits (99), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 44/87 (50%)
Query: 208 MSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEI 267
M + L+L + V + A +I RKA+E +V GRS + AA IY + + + R+ +I
Sbjct: 132 MDKLKDKLTLTDTVIEKAAYIYRKAIERKLVKGRSIHGLVAACIYASCRMTETPRTLDDI 191
Query: 268 GDIAGVAEVTIRQSYKLMYPHASKLFP 294
+ + + +SY++++ P
Sbjct: 192 AEGINIKRKDVARSYRIIFRELDLKIP 218
>gi|332796366|ref|YP_004457866.1| transcription initiation factor TFIIB [Acidianus hospitalis W1]
gi|332694101|gb|AEE93568.1| transcription initiation factor TFIIB [Acidianus hospitalis W1]
Length = 304
Score = 155 bits (393), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 97/282 (34%), Positives = 157/282 (55%), Gaps = 11/282 (3%)
Query: 12 PDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGS 71
P ++ D G+ IC+E G V+ +R+ID G EWR F+ E+ SRVGGP N ++
Sbjct: 11 PPDKIVFDADRGEYICTETGEVIEERIIDQGPEWRAFTPEEKE-KRSRVGGPLNQTIHDR 69
Query: 72 DLSTMIGPGRGDA---------SFDGFGMSKYQNR-RTMNSSDRALLNAIREINSMADRI 121
LST+I DA + K+Q R R +S DR L A+ E+ + + +
Sbjct: 70 GLSTLIDWKDKDAIGRNLDPKRRLEVLRWRKWQIRARIQSSIDRNLAQAMNELERIGNLL 129
Query: 122 NLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISK 181
L K++ D A ++++ + ++GRS +++ +A +Y +CR+ + RT EI +K ++
Sbjct: 130 GLPKSVKDEAALIYRKAVEKGLVRGRSIESVVAASIYASCRRIKIARTLDEIAQYTKANR 189
Query: 182 KEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGR 241
KE+ RC++L+L+ L V + D+++R S L L K A I KA + G+
Sbjct: 190 KEVARCYRLLLRELNVEVPVSDPKDYVTRIGSLLGLSGATMKLAAEILEKAKNAGLTAGK 249
Query: 242 SPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
P +AAAAIY+A+ + ++R+QKEI +AGV EVT+R YK
Sbjct: 250 DPAGLAAAAIYIAALMNDERRTQKEIAQVAGVTEVTVRNRYK 291
Score = 44.7 bits (104), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 60/123 (48%), Gaps = 7/123 (5%)
Query: 183 EIGRCFKLILKA-LETSVD--LITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVP 239
E+ R K ++A +++S+D L + + R + L LP V+ A I RKAVE +V
Sbjct: 94 EVLRWRKWQIRARIQSSIDRNLAQAMNELERIGNLLGLPKSVKDEAALIYRKAVEKGLVR 153
Query: 240 GRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKLF----PQ 295
GRS SV AA+IY + + R+ EI + + Y+L+ + P+
Sbjct: 154 GRSIESVVAASIYASCRRIKIARTLDEIAQYTKANRKEVARCYRLLLRELNVEVPVSDPK 213
Query: 296 DFV 298
D+V
Sbjct: 214 DYV 216
>gi|330833963|ref|YP_004408691.1| transcription initiation factor IIB [Metallosphaera cuprina Ar-4]
gi|329566102|gb|AEB94207.1| transcription initiation factor IIB [Metallosphaera cuprina Ar-4]
Length = 305
Score = 155 bits (393), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 98/284 (34%), Positives = 158/284 (55%), Gaps = 11/284 (3%)
Query: 10 EHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLN 69
E P +I D G+ ICSE G V+ +R++D G EWR F+ E+ SRVGGP N ++
Sbjct: 10 ECPQDKIIFDADRGEYICSENGEVIEERIVDQGPEWRAFTPEEKE-KRSRVGGPLNQTIH 68
Query: 70 GSDLSTMIGPGRGDA---------SFDGFGMSKYQNR-RTMNSSDRALLNAIREINSMAD 119
LST+I DA + K+Q R R +S DR L A+ E+ + +
Sbjct: 69 DRGLSTLIDWKDKDAIGRNLDPKRRLEVLRWRKWQIRARIQSSIDRNLAQAMNELERIGN 128
Query: 120 RINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKI 179
+ L K++ D ++++ + ++GRS +++ +A +Y +CR+ + RT EI +K
Sbjct: 129 LLGLPKSVKDEGALIYRKAVEKGLVRGRSIESVVAAAIYASCRRMKIARTLDEIAQYTKA 188
Query: 180 SKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVP 239
++KE+ RC++L+L+ L V + D+++R S L L K A I KA + +
Sbjct: 189 NRKEVARCYRLLLRELNVGVPVSDPKDYVTRIGSLLGLSGASMKLAAEILDKAKNVGLTA 248
Query: 240 GRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
G+ P +AAAAIY+A+ + ++R+QKEI +AGV EVT+R YK
Sbjct: 249 GKDPAGLAAAAIYIAALLNEERRTQKEIAQVAGVTEVTVRNRYK 292
Score = 45.1 bits (105), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 53/106 (50%), Gaps = 3/106 (2%)
Query: 183 EIGRCFKLILKA-LETSVD--LITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVP 239
E+ R K ++A +++S+D L + + R + L LP V+ I RKAVE +V
Sbjct: 95 EVLRWRKWQIRARIQSSIDRNLAQAMNELERIGNLLGLPKSVKDEGALIYRKAVEKGLVR 154
Query: 240 GRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLM 285
GRS SV AAAIY + + R+ EI + + Y+L+
Sbjct: 155 GRSIESVVAAAIYASCRRMKIARTLDEIAQYTKANRKEVARCYRLL 200
>gi|448371933|ref|ZP_21557052.1| transcription factor TFIIB cyclin-related protein [Natrialba
aegyptia DSM 13077]
gi|445647024|gb|ELZ00005.1| transcription factor TFIIB cyclin-related protein [Natrialba
aegyptia DSM 13077]
Length = 318
Score = 155 bits (393), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 97/286 (33%), Positives = 158/286 (55%), Gaps = 12/286 (4%)
Query: 8 CYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPL 67
C E + ++ G++IC ECGLV+ + ++D G EWR F N K + SRVG P
Sbjct: 26 CSECGSSNVVRHSDQGERICEECGLVIEEAMVDSGPEWRAF-NHKERQEKSRVGAPTTQT 84
Query: 68 LNGSDLSTMIGPGRGDASFDGFG---------MSKYQNR-RTMNSSDRALLNAIREINSM 117
++ L+T I DA + K+Q+R RT ++ +R L A+ EI+ M
Sbjct: 85 MHDKGLTTQIDWKDKDAYGRSISSKKRSQMNRLRKWQSRIRTKDAGERNLQFALSEIDRM 144
Query: 118 ADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVS 177
A + + +++ + + ++++ ++GRS + +A+A LY CRQEG+PR+ +EI VS
Sbjct: 145 ASALGVPRSVREVTSMIYRRALQEDLIRGRSIEGVATAALYAGCRQEGIPRSLEEITEVS 204
Query: 178 KISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDI 237
+I + E+ R ++ I L + I ++ RF S L+LP V+ A I + + +
Sbjct: 205 RIERIEVSRTYRYISNELGLELLPIDPKQYVPRFSSKLNLPQEVEAKANEIIEETAD-PL 263
Query: 238 VPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
+ GR P AAAAIY A+ ++KR+QKE+ D+A V EVTIR Y+
Sbjct: 264 LSGRGPSGFAAAAIYAAALLCNEKRTQKEVADVAQVTEVTIRNRYQ 309
>gi|340344812|ref|ZP_08667944.1| Transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosoarchaeum koreensis MY1]
gi|339519953|gb|EGP93676.1| Transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosoarchaeum koreensis MY1]
Length = 309
Score = 155 bits (393), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 83/278 (29%), Positives = 155/278 (55%), Gaps = 11/278 (3%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLST 75
++ D G++ C +CG V+ + + D G EWR+FS E G DP+R G P + ++ L+T
Sbjct: 24 MMTDNVTGERFCGKCGYVITEILSDSGPEWRSFSKE-GGTDPTRTGAPTSLTIHDRGLAT 82
Query: 76 MIGPGRGDAS---FDGFGMSKYQNRRTMNS-------SDRALLNAIREINSMADRINLTK 125
+I P D+S S + RT +S +DR L A+ E++ + D+++L+
Sbjct: 83 IINPINRDSSGKPLTSSMKSTIERLRTWDSRSKVHESADRNLRQALSELSRLKDKLSLSD 142
Query: 126 TIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIG 185
++++A ++++ + ++GRS A+ ++ LY ACR PRT K++ I KK+I
Sbjct: 143 AVIEKAAYIYRKALEKGLVRGRSISALIASALYAACRDTETPRTLKDVSDAGNIKKKDIA 202
Query: 186 RCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPIS 245
RC++L+ + L+ + ++ ++R S L + ++ A + + A E + G+ P+
Sbjct: 203 RCYRLLHRELDLKMPVVDPIQCVARIASKLGISEKTKRFAVKVLKTAQEHEESAGKDPMG 262
Query: 246 VAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
+AAAA+Y++ + + +Q++I + A V EVTIR YK
Sbjct: 263 LAAAALYLSCVNNCENMTQRDIAEAASVTEVTIRNRYK 300
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 47/79 (59%)
Query: 208 MSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEI 267
+SR LSL + V + A +I RKA+E +V GRS ++ A+A+Y A + + R+ K++
Sbjct: 131 LSRLKDKLSLSDAVIEKAAYIYRKALEKGLVRGRSISALIASALYAACRDTETPRTLKDV 190
Query: 268 GDIAGVAEVTIRQSYKLMY 286
D + + I + Y+L++
Sbjct: 191 SDAGNIKKKDIARCYRLLH 209
>gi|448571794|ref|ZP_21639968.1| transcription initiation factor TFB [Haloferax lucentense DSM
14919]
gi|445721761|gb|ELZ73427.1| transcription initiation factor TFB [Haloferax lucentense DSM
14919]
Length = 318
Score = 155 bits (393), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 99/287 (34%), Positives = 155/287 (54%), Gaps = 13/287 (4%)
Query: 7 CCYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTF-SNEKSGVDPSRVGGPEN 65
C E L+ D G+ +C +CGLVV + ID G EWR F S+EK + SRVG P
Sbjct: 21 TCPECGSESLVSDTEHGETVCDDCGLVVEEDEIDHGPEWRAFNSSEKD--EKSRVGAPTT 78
Query: 66 PLLNGSDLSTMIGPGRGDA---SFDGFGMSKYQNRRTMN-------SSDRALLNAIREIN 115
+++ LST IG DA S K Q RT N S +R L A+ EI+
Sbjct: 79 NMMHDKGLSTNIGWQNKDAYGRSLSSRQREKMQRLRTWNERFRTRDSKERNLKQALGEID 138
Query: 116 SMADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICA 175
MA + L + + A+ ++++ D L GRS + +A++ LY A R G PR+ EI +
Sbjct: 139 RMASALGLPDNVRETASVIYRRALDDDLLPGRSIEGVATSALYAAARMAGTPRSLDEITS 198
Query: 176 VSKISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVEL 235
VS++ K EI R ++ +++ L + ++ RF S L L + ++ A + + A E
Sbjct: 199 VSRVEKDEIARTYRYVVRELSLEIKPADPEQYVPRFASELGLSDESERRARQLLKNAKEQ 258
Query: 236 DIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSY 282
+ G+SP+ +AAAA+Y AS +++K +Q E+ ++A ++EVTIR Y
Sbjct: 259 GVHSGKSPVGLAAAAVYAASLLTNEKVTQNEVSEVANISEVTIRNRY 305
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 56/96 (58%), Gaps = 1/96 (1%)
Query: 208 MSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEI 267
+ R S L LP+ V++ A+ I R+A++ D++PGRS VA +A+Y A++ + RS EI
Sbjct: 137 IDRMASALGLPDNVRETASVIYRRALDDDLLPGRSIEGVATSALYAAARMAGTPRSLDEI 196
Query: 268 GDIAGVAEVTIRQSYKLMYPHAS-KLFPQDFVFHTP 302
++ V + I ++Y+ + S ++ P D + P
Sbjct: 197 TSVSRVEKDEIARTYRYVVRELSLEIKPADPEQYVP 232
>gi|448498359|ref|ZP_21610792.1| transcription factor TFIIB cyclin-related protein [Halorubrum
coriense DSM 10284]
gi|445698780|gb|ELZ50819.1| transcription factor TFIIB cyclin-related protein [Halorubrum
coriense DSM 10284]
Length = 317
Score = 155 bits (392), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 95/271 (35%), Positives = 151/271 (55%), Gaps = 11/271 (4%)
Query: 23 GDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLSTMIGPGRG 82
G+ I E GL+V D ID G EWR F N + SRVG P ++ L+T I
Sbjct: 38 GELIHEETGLIVEDEQIDPGPEWRAF-NHSERQEKSRVGAPTTKTMHDKGLTTTIDWKDK 96
Query: 83 DASFDGFG---------MSKYQNR-RTMNSSDRALLNAIREINSMADRINLTKTIVDRAN 132
DA + K+Q R RT ++ +R L A+ EI+ MA + + +++ + A+
Sbjct: 97 DAYGRSISSKKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDRMASALGVPRSVREVAS 156
Query: 133 NLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGRCFKLIL 192
++++ + ++GRS + +++A LY ACR+EG+PR+ +EI VS++ +KEIGR ++ I
Sbjct: 157 VIYRRALNEDLIRGRSIEGVSTAALYAACRKEGIPRSLEEISEVSRVDRKEIGRTYRYIS 216
Query: 193 KALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIY 252
+ L + + ++ RF S L L VQ A I E ++ G+SP AAAAIY
Sbjct: 217 QELGLEMRPVDPKKYVPRFSSELELSEEVQSKANEIIETTAEQGLLSGKSPTGYAAAAIY 276
Query: 253 MASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
AS ++K++Q+E+ D+A V EVTIR Y+
Sbjct: 277 AASLLCNEKKTQREVADVAQVTEVTIRNRYQ 307
>gi|448434664|ref|ZP_21586438.1| transcription factor TFIIB cyclin-related protein [Halorubrum
tebenquichense DSM 14210]
gi|448531800|ref|ZP_21621088.1| transcription factor TFIIB cyclin-related protein [Halorubrum
hochstenium ATCC 700873]
gi|445684660|gb|ELZ37033.1| transcription factor TFIIB cyclin-related protein [Halorubrum
tebenquichense DSM 14210]
gi|445707005|gb|ELZ58873.1| transcription factor TFIIB cyclin-related protein [Halorubrum
hochstenium ATCC 700873]
Length = 317
Score = 155 bits (391), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 95/271 (35%), Positives = 151/271 (55%), Gaps = 11/271 (4%)
Query: 23 GDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLSTMIGPGRG 82
G+ I E GLV+ D ID G EWR F N + SRVG P ++ L+T I
Sbjct: 38 GELIHEETGLVIEDEQIDPGPEWRAF-NHNERQEKSRVGAPTTKTMHDKGLTTTIDWKDK 96
Query: 83 DASFDGFG---------MSKYQNR-RTMNSSDRALLNAIREINSMADRINLTKTIVDRAN 132
DA + K+Q R RT ++ +R L A+ EI+ MA + + +++ + A+
Sbjct: 97 DAYGRSISSKKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDRMASALGVPRSVREVAS 156
Query: 133 NLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGRCFKLIL 192
++++ + ++GRS + +++A LY ACR+EG+PR+ +EI VS++ +KEIGR ++ I
Sbjct: 157 VIYRRALNEDLIRGRSIEGVSTAALYAACRKEGIPRSLEEISEVSRVDRKEIGRTYRYIS 216
Query: 193 KALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIY 252
+ L + + ++ RF S L L VQ A I E ++ G+SP AAAAIY
Sbjct: 217 QELGLEMRPVDPKKYVPRFSSELELSEEVQSKANEIIETTAEQGLLSGKSPTGYAAAAIY 276
Query: 253 MASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
AS ++K++Q+E+ D+A V EVTIR Y+
Sbjct: 277 AASLLCNEKKTQREVADVAQVTEVTIRNRYQ 307
>gi|448309529|ref|ZP_21499387.1| transcription initiation factor IIB [Natronorubrum bangense JCM
10635]
gi|445589952|gb|ELY44175.1| transcription initiation factor IIB [Natronorubrum bangense JCM
10635]
Length = 325
Score = 155 bits (391), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 97/277 (35%), Positives = 153/277 (55%), Gaps = 11/277 (3%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLST 75
L+ D + +C +CGLVV + ID G EWR F N + SRVG P +++ LST
Sbjct: 38 LVSDTEHAETVCDDCGLVVEEGEIDHGPEWRAF-NASEKDEKSRVGAPTTNMMHDQGLST 96
Query: 76 MIGPGRGDA---SFDGFGMSKYQNRRTMN-------SSDRALLNAIREINSMADRINLTK 125
IG DA S K Q RT N S +R L A+ EI+ MA + L K
Sbjct: 97 NIGWQNKDAYGKSLSNRQRQKMQRLRTWNERFRTRDSKERNLKQALGEIDRMASALGLPK 156
Query: 126 TIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIG 185
++ + A+ ++++ + L GRS + +A++ LY A RQ G PR+ EI AVS++ K EI
Sbjct: 157 SVRETASVIYRRALEEDLLPGRSIEGVATSSLYAAARQAGTPRSLDEITAVSRVEKDEIA 216
Query: 186 RCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPIS 245
R ++ +++ L V +++ RF S+L L + ++ A + A E I G+SP+
Sbjct: 217 RTYRYVIRELGLEVQPADPENYVPRFASDLDLSDETERRARSLLSTAKESGIHSGKSPVG 276
Query: 246 VAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSY 282
+AAAA+Y A+ +++K +Q ++ D+A ++EVTIR Y
Sbjct: 277 LAAAAVYAAALLTNEKVTQNDVSDVASISEVTIRNRY 313
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 48/78 (61%)
Query: 208 MSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEI 267
+ R S L LP V++ A+ I R+A+E D++PGRS VA +++Y A++ + RS EI
Sbjct: 145 IDRMASALGLPKSVRETASVIYRRALEEDLLPGRSIEGVATSSLYAAARQAGTPRSLDEI 204
Query: 268 GDIAGVAEVTIRQSYKLM 285
++ V + I ++Y+ +
Sbjct: 205 TAVSRVEKDEIARTYRYV 222
>gi|39545936|gb|AAR28031.1| mutant TFIIB3 [Arabidopsis thaliana]
Length = 336
Score = 155 bits (391), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 107/306 (34%), Positives = 158/306 (51%), Gaps = 20/306 (6%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNE--KSGVDPSRVGGPENPLLNGSDL 73
++ D+ +GD ICSECGLV+ +I+ EWRTF+++ S DP+RVG NP L DL
Sbjct: 15 MVVDHSSGDTICSECGLVLEAHIIEYSQEWRTFASDDNHSDRDPNRVGAATNPFLKSGDL 74
Query: 74 STMIGPGRGDASF----DGFGMSKYQNRRTMNSSDRALLNAIREINSMADRINLTKTIVD 129
T+I + AS D + + N + + A EI M D ++L I
Sbjct: 75 VTIIEKPKETASSVLSKDDISTLFRAHNQVKNHEEDLIKQAFEEIQRMTDALDLDIVINS 134
Query: 130 RANNLFKQVHDGKNLK---GRSNDAIASACLYIACRQEGVPRTFKEICAVSK-ISKKEIG 185
RA + + N K G+ +AI +A + ACR+ + RT KEI V+ + KK+I
Sbjct: 135 RACEIVSKYDGHANTKLRRGKKLNAICAASVSTACRELQLSRTLKEIAEVANGVDKKDIR 194
Query: 186 R---CFKLILKALETSVD----LITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIV 238
+ K +L++ +TSV +I TGD + RFCS L + A KA DI
Sbjct: 195 KESLVIKRVLESHQTSVSASQAIINTGDLVRRFCSKLDISQREIMAIPEAVEKAENFDI- 253
Query: 239 PGRSPISVAAAAIYMASQAS-SDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKLFPQDF 297
R+P SV AA I+M S S ++++ +EIG +A V E TI+ S K MYP+A K+ P +
Sbjct: 254 -RRNPKSVLAAIIFMISHISQTNRKPIREIGIVAEVVENTIKNSVKDMYPYALKIIPNWY 312
Query: 298 VFHTPI 303
+ I
Sbjct: 313 ACESDI 318
>gi|342319859|gb|EGU11804.1| Transcription initiation factor IIB [Rhodotorula glutinis ATCC
204091]
Length = 417
Score = 155 bits (391), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 121/356 (33%), Positives = 178/356 (50%), Gaps = 69/356 (19%)
Query: 1 MNINKVCCYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSE---------------- 44
+N+ C +IE++ +GD +C CGLV+GD+V+D SE
Sbjct: 26 LNVRLTCPDCGDAGQVIEEFSSGDLVCGNCGLVLGDKVVDTRSECERALLFSSALQLDSP 85
Query: 45 -----------------------------------W--RTFSNEKSGVDPSRVGGPENPL 67
W RTF++ G DPSRVGGP +PL
Sbjct: 86 SMPSCCGRRRRRSACTGGQAGVSGGLKDLSWRFCHWERRTFADS-DGDDPSRVGGPADPL 144
Query: 68 LNGSD-LSTMIG---PGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADRINL 123
L+ +D LST+I G A S+ + S R L A REI +M + I+L
Sbjct: 145 LDSTDQLSTVISFKDNNTGVARALQMAASRVA-KDAQGGSGRDLQGAFREIATMCEAISL 203
Query: 124 TKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKE 183
K I+D + LFK+V + K L+G+S AI +AC++IACRQ VPRTFKEI A++ +SKKE
Sbjct: 204 PKAIIDTSKMLFKRVDEEKALRGKSEAAIIAACIFIACRQGRVPRTFKEIVALTNVSKKE 263
Query: 184 IGRCFKLILKALET-------SVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELD 236
I FK I K +T S DL + +SR C++L+LP +Q+A + +K V+
Sbjct: 264 IAGAFKQIDKLFDTSSPHGASSTDLDS---LISRICNHLALPVPLQRACSLCGQKTVDDG 320
Query: 237 IVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKL 292
++ GR+PI++A++ I S + KEI + GV + TIR Y+L+ +L
Sbjct: 321 VLAGRNPITIASSCILFVSTLWGRRVDPKEIAKVGGVQDSTIRTGYRLLLTVKERL 376
>gi|399577766|ref|ZP_10771518.1| transcription initiation factor iib (tfiib) [Halogranum salarium
B-1]
gi|399237208|gb|EJN58140.1| transcription initiation factor iib (tfiib) [Halogranum salarium
B-1]
Length = 338
Score = 155 bits (391), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 94/271 (34%), Positives = 151/271 (55%), Gaps = 11/271 (4%)
Query: 23 GDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLSTMIGPGRG 82
G+ IC +CGLV+ ++ ID G EWR F N SRVG P ++ L+T I
Sbjct: 61 GEVICDDCGLVLDEQNIDRGPEWRAF-NHSERQSKSRVGAPTTKTMHDKGLTTTIDWQNK 119
Query: 83 DASFDGFG---------MSKYQNR-RTMNSSDRALLNAIREINSMADRINLTKTIVDRAN 132
DA + K+Q R RT ++ +R L A+ E++ MA + + ++ + A+
Sbjct: 120 DAYGRSLSSEKRSQMHRLRKWQERIRTKDAGERNLQFALSEMDRMASALGVPDSVREVAS 179
Query: 133 NLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGRCFKLIL 192
++++ + ++GRS + +A++ LY ACRQEG+PR+ E+ VS++ +KEIGR ++ I
Sbjct: 180 VIYRRALNEDLIRGRSIEGVATSALYAACRQEGIPRSLDEVAEVSRVPQKEIGRTYRYIS 239
Query: 193 KALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIY 252
+ L + + F+ RF S L L VQ A I + E ++ G+SP AAAAIY
Sbjct: 240 QELGLELKPVDPKQFVPRFASELELSKEVQSKANEIIDVSAEKGLLSGKSPTGFAAAAIY 299
Query: 253 MASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
AS ++K++Q+E+ +A V EVTIR Y+
Sbjct: 300 AASLLCNEKKTQREVASVAQVTEVTIRNRYQ 330
>gi|389846515|ref|YP_006348754.1| transcription initiation factor TFB [Haloferax mediterranei ATCC
33500]
gi|448615811|ref|ZP_21664574.1| transcription initiation factor TFB [Haloferax mediterranei ATCC
33500]
gi|388243821|gb|AFK18767.1| transcription initiation factor TFB [Haloferax mediterranei ATCC
33500]
gi|445751942|gb|EMA03373.1| transcription initiation factor TFB [Haloferax mediterranei ATCC
33500]
Length = 345
Score = 154 bits (390), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 98/288 (34%), Positives = 157/288 (54%), Gaps = 13/288 (4%)
Query: 6 VCCYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTF-SNEKSGVDPSRVGGPE 64
+ C E L+ D G+ +C ECGLVV + ID G EWR F S+EK SRVG P
Sbjct: 47 LSCPECGSETLVSDSEHGETVCDECGLVVQENEIDRGPEWRAFNSSEKD--QKSRVGAPT 104
Query: 65 NPLLNGSDLSTMIGPGRGDA---SFDGFGMSKYQNRRTMN-------SSDRALLNAIREI 114
+++ LST IG DA S K Q RT N S +R L A+ EI
Sbjct: 105 TNMMHDKGLSTNIGWQNKDAYGRSLSSRQREKMQRLRTWNERFRTRDSKERNLKQALGEI 164
Query: 115 NSMADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEIC 174
+ MA + L +++ + A+ ++++ + L GRS + +A+A LY + R PR+ EI
Sbjct: 165 DRMASALGLPESVRETASVIYRRALNDDLLPGRSIEGVATAALYASARMASTPRSLDEIT 224
Query: 175 AVSKISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVE 234
+VS++ K+EI R ++ +++ L+ + ++ RF S L L + ++ A + + A E
Sbjct: 225 SVSRVEKEEIARTYRYVVRELKLEIKPADPEQYVPRFASELGLSDESERRARQLLKNAKE 284
Query: 235 LDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSY 282
+ G+SP+ +AAAA+Y AS +++K +Q E+ +A ++EVTIR Y
Sbjct: 285 QGVHSGKSPVGLAAAAVYAASLLTNEKVTQNEVSGVANISEVTIRNRY 332
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 48/78 (61%)
Query: 208 MSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEI 267
+ R S L LP V++ A+ I R+A+ D++PGRS VA AA+Y +++ +S RS EI
Sbjct: 164 IDRMASALGLPESVRETASVIYRRALNDDLLPGRSIEGVATAALYASARMASTPRSLDEI 223
Query: 268 GDIAGVAEVTIRQSYKLM 285
++ V + I ++Y+ +
Sbjct: 224 TSVSRVEKEEIARTYRYV 241
>gi|322371117|ref|ZP_08045669.1| Transcription factor TFIIB cyclin-related protein [Haladaptatus
paucihalophilus DX253]
gi|320549107|gb|EFW90769.1| Transcription factor TFIIB cyclin-related protein [Haladaptatus
paucihalophilus DX253]
Length = 324
Score = 154 bits (390), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 95/280 (33%), Positives = 155/280 (55%), Gaps = 13/280 (4%)
Query: 14 APLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTF-SNEKSGVDPSRVGGPENPLLNGSD 72
PL+ D G+++C +CGLVV + +D G EWR F ++E+ SRVG P +++
Sbjct: 34 GPLVTDEERGERVCDDCGLVVEEDAVDRGPEWRAFDASERE--QKSRVGAPTTNMMHDKG 91
Query: 73 LSTMIGPGRGDASFDGFG---------MSKYQNR-RTMNSSDRALLNAIREINSMADRIN 122
LST I DA + G + K+ R RT +S +R L A+ EI+ MA +
Sbjct: 92 LSTNIDWRDRDAYGNSLGSRQREKMQRLRKWNERFRTRDSKERNLKQALGEIDRMASSLG 151
Query: 123 LTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKK 182
L T+ + A+ ++++ D L GRS + +A+ LY A RQ PR+ E+ AVS++ K
Sbjct: 152 LPDTVRETASVIYRRALDEDLLPGRSIEGVATGALYAAARQARTPRSLDELTAVSRVEKD 211
Query: 183 EIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRS 242
EI R ++ I + L ++ ++ RF S L L + ++ A + A E + G+S
Sbjct: 212 EIARTYRYIARELGLEIEPADPKSYVPRFASELDLSDETERRARSLLDTATEKGLHSGKS 271
Query: 243 PISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSY 282
P+ +AAAA+Y A+ +++K +Q E+ D+A ++EVTIR Y
Sbjct: 272 PVGLAAAAVYAAALLTNEKVTQSEVSDVANISEVTIRNRY 311
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 49/78 (62%)
Query: 208 MSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEI 267
+ R S+L LP+ V++ A+ I R+A++ D++PGRS VA A+Y A++ + RS E+
Sbjct: 143 IDRMASSLGLPDTVRETASVIYRRALDEDLLPGRSIEGVATGALYAAARQARTPRSLDEL 202
Query: 268 GDIAGVAEVTIRQSYKLM 285
++ V + I ++Y+ +
Sbjct: 203 TAVSRVEKDEIARTYRYI 220
>gi|448308419|ref|ZP_21498296.1| Transcription factor TFIIB cyclin-related protein [Natronorubrum
bangense JCM 10635]
gi|445593707|gb|ELY47876.1| Transcription factor TFIIB cyclin-related protein [Natronorubrum
bangense JCM 10635]
Length = 321
Score = 154 bits (390), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 94/286 (32%), Positives = 153/286 (53%), Gaps = 11/286 (3%)
Query: 8 CYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPL 67
C E + LI + C +CGL++ + ID G EWR F N SRVG P
Sbjct: 27 CPECDSSSLIRSSDESEISCEDCGLILEEETIDRGPEWRAF-NHSERDSKSRVGAPTTQT 85
Query: 68 LNGSDLSTMIGPGRGDASFDGFG---------MSKYQNR-RTMNSSDRALLNAIREINSM 117
++ L+T I DA + K+Q R RT ++ +R L A+ E + M
Sbjct: 86 MHDKGLTTTIDWKNKDAYGRSLSSDKRTQMNRLRKWQERIRTKDAGERNLQFALSETDRM 145
Query: 118 ADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVS 177
A + + +++ + A+ L+++ ++GRS + +A++ LY ACR EG+PR+ E+ AVS
Sbjct: 146 ASALGVPRSVREVASVLYRRALSEDLIRGRSIEGVATSTLYAACRMEGIPRSLDEVAAVS 205
Query: 178 KISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDI 237
++ + EIGR ++ I + L ++ + ++ RFCS L L VQ A I E +
Sbjct: 206 RVERMEIGRTYRYISQELSLEMEPVDPKKYVPRFCSELDLSEEVQAKANEIIDTTAEQGM 265
Query: 238 VPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
+ G+SP AAAAIY ++ ++K++Q+E+ D+A V EVTIR Y+
Sbjct: 266 LSGKSPTGYAAAAIYASALLCNEKKTQREVADVAQVTEVTIRNRYQ 311
>gi|393795800|ref|ZP_10379164.1| transcription initiation factor TFIIB [Candidatus Nitrosoarchaeum
limnia BG20]
Length = 303
Score = 154 bits (390), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 85/286 (29%), Positives = 152/286 (53%), Gaps = 11/286 (3%)
Query: 8 CYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPL 67
C ++ D G+ CS+CG V DRV G EWR+FS ++ G + +R G P +
Sbjct: 11 CQRCNRGAILTDSNTGEMFCSKCGFVATDRVEQEGPEWRSFSKDE-GDNRTRTGTPTSLA 69
Query: 68 LNGSDLSTMIGPGRGDASFDGFGMS---------KYQNRRTMNSS-DRALLNAIREINSM 117
++ L+T+I P DA+ S + NR ++ DR A E++ +
Sbjct: 70 IHDMGLATIINPINKDATGKPLSASMKSTIERLRTWDNRSQVHEPVDRNFRQAFSELDRL 129
Query: 118 ADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVS 177
++ L+ T++++ ++++ D ++GRS + +A LY ACR PRT ++
Sbjct: 130 KTKLALSDTVIEKTAYIYRKALDKGLVRGRSIPGLIAASLYAACRNTETPRTLSDVANSI 189
Query: 178 KISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDI 237
I +K+I RC++L+L+ L+ + ++ +SR SN L ++ A I +A ++++
Sbjct: 190 NIKRKDIARCYRLLLRELDLKMPVVNPVKCISRISSNAGLSEKTKRKAIEILDQAAKIEL 249
Query: 238 VPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
G+ P+ +AAAA+Y++ + + ++QK+I AGV EVTIR YK
Sbjct: 250 SAGKDPMGLAAAALYLSCVKNGEDKTQKDIAVAAGVTEVTIRNRYK 295
Score = 37.4 bits (85), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 42/78 (53%)
Query: 208 MSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEI 267
+ R + L+L + V + +I RKA++ +V GRS + AA++Y A + + R+ ++
Sbjct: 126 LDRLKTKLALSDTVIEKTAYIYRKALDKGLVRGRSIPGLIAASLYAACRNTETPRTLSDV 185
Query: 268 GDIAGVAEVTIRQSYKLM 285
+ + I + Y+L+
Sbjct: 186 ANSINIKRKDIARCYRLL 203
>gi|448329711|ref|ZP_21519008.1| Transcription factor TFIIB cyclin-related protein [Natrinema
versiforme JCM 10478]
gi|445613635|gb|ELY67331.1| Transcription factor TFIIB cyclin-related protein [Natrinema
versiforme JCM 10478]
Length = 326
Score = 154 bits (390), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 101/290 (34%), Positives = 158/290 (54%), Gaps = 13/290 (4%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTF-SNEKSGVDPSRVGGPENPLLNGSDLS 74
LI D + +CS+CGLVV + ID G EWR F S EK + SRVG P +++ LS
Sbjct: 38 LISDDEHAETVCSDCGLVVEEDEIDRGPEWRAFDSAEKD--EKSRVGAPTTNMMHDQGLS 95
Query: 75 TMIGPGRGDA---SFDGFGMSKYQNRRTMN-------SSDRALLNAIREINSMADRINLT 124
T IG DA S K Q RT N S +R L A+ EI+ MA + L
Sbjct: 96 TNIGWQDKDAYGRSLSSRQRQKMQRLRTWNERFRTRDSKERNLKQALGEIDRMASALGLP 155
Query: 125 KTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEI 184
+ + + A+ ++++ + L GRS + +A+A LY A RQ G PR+ EI AVS++ K E+
Sbjct: 156 ENVRETASVIYRRALEEDLLPGRSIEGVATASLYAAARQAGTPRSLDEISAVSRVEKMEL 215
Query: 185 GRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPI 244
R ++ I++ L V ++ RF S+L L + ++ A + A + + G+SP+
Sbjct: 216 TRTYRYIIRELGLEVKPADPEHYVPRFVSDLDLSDETERMARELLESARQEGVHSGKSPV 275
Query: 245 SVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKLFP 294
+AAAA+Y A+ +++K +Q E+ ++A ++EVTIR YK + + P
Sbjct: 276 GLAAAAVYAAALLTNEKVTQNEVSEVASISEVTIRNRYKELLEASDTAAP 325
>gi|148508035|gb|ABQ75833.1| transcription initiation factor TFB [uncultured haloarchaeon]
Length = 331
Score = 154 bits (390), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 98/289 (33%), Positives = 160/289 (55%), Gaps = 12/289 (4%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLST 75
L+ D G+ +C++CGLVV + ID G EWR F + + SRVG P L++ LST
Sbjct: 43 LVTDGARGETVCADCGLVVDEDSIDRGPEWRAFDSAERD-QKSRVGAPTTNLMHDKGLST 101
Query: 76 MIGPGRGDA---SFDGFGMSKYQNRRTMN-------SSDRALLNAIREINSMADRINLTK 125
IG DA S + Q RT N S +R L A+ EI+ MA + L +
Sbjct: 102 NIGWRNKDAYGNSLSARQREQMQRLRTWNERFRTRDSKERNLKQALGEIDRMASALGLPE 161
Query: 126 TIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIG 185
+ + A+ ++++ L GRS + +A+A LY + RQ G PR+ EI VS++ K E+
Sbjct: 162 NVRETASVIYRRALAEDLLPGRSIEGVATAALYASARQAGTPRSLDEIERVSRVEKMELT 221
Query: 186 RCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPIS 245
R ++ +++ L+ ++ ++ RF S+L L + ++ A + + A E I G+SP+
Sbjct: 222 RTYRYVVRELKLEIEPADPEQYVPRFASDLDLSDEAERQARQLLKNAKEAAIHSGKSPVG 281
Query: 246 VAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK-LMYPHASKLF 293
+AAA++Y A+ +++K +Q E+ D+A V+EVTIR YK L+ + LF
Sbjct: 282 LAAASVYAAALLTNEKVTQSEVSDVANVSEVTIRNRYKELLEADGAGLF 330
>gi|448304716|ref|ZP_21494652.1| Transcription factor TFIIB cyclin-related protein [Natronorubrum
sulfidifaciens JCM 14089]
gi|445590097|gb|ELY44318.1| Transcription factor TFIIB cyclin-related protein [Natronorubrum
sulfidifaciens JCM 14089]
Length = 321
Score = 154 bits (389), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 94/286 (32%), Positives = 153/286 (53%), Gaps = 11/286 (3%)
Query: 8 CYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPL 67
C E + LI + C +CGL++ + ID G EWR F N SRVG P
Sbjct: 27 CPECDSSSLIRSSDESEVSCEDCGLILEEEAIDRGPEWRAF-NHSERNSKSRVGAPTTQT 85
Query: 68 LNGSDLSTMIGPGRGDASFDGFG---------MSKYQNR-RTMNSSDRALLNAIREINSM 117
++ L+T I DA + K+Q R RT ++ +R L A+ E + M
Sbjct: 86 MHDKGLTTTIDWKNKDAYGRSLSSDKRNQMNRLRKWQERIRTKDAGERNLQFALSETDRM 145
Query: 118 ADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVS 177
A + + +++ + A+ L+++ ++GRS + +A++ LY ACR EG+PR+ E+ AVS
Sbjct: 146 ASALGVPRSVREVASVLYRRALSEDLIRGRSIEGVATSTLYAACRMEGIPRSLDEVSAVS 205
Query: 178 KISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDI 237
++ + EIGR ++ I + L ++ + ++ RFCS L L VQ A I E +
Sbjct: 206 RVDRMEIGRTYRYISQELSLEMEPVDPKKYVPRFCSELDLSEEVQAKANEIIDTTAEQGM 265
Query: 238 VPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
+ G+SP AAAAIY ++ ++K++Q+E+ D+A V EVTIR Y+
Sbjct: 266 LSGKSPTGYAAAAIYASALLCNEKKTQREVADVAQVTEVTIRNRYQ 311
>gi|448482042|ref|ZP_21605256.1| transcription factor TFIIB cyclin-related protein [Halorubrum arcis
JCM 13916]
gi|445821444|gb|EMA71235.1| transcription factor TFIIB cyclin-related protein [Halorubrum arcis
JCM 13916]
Length = 317
Score = 154 bits (389), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 93/271 (34%), Positives = 151/271 (55%), Gaps = 11/271 (4%)
Query: 23 GDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLSTMIGPGRG 82
G+ I E G+++ D ID G EWR F N + SRVG P ++ L+T I
Sbjct: 38 GELIHEETGMIIEDEQIDPGPEWRAF-NHSERQEKSRVGAPTTKTMHDKGLTTTIDWKDK 96
Query: 83 DASFDGFG---------MSKYQNR-RTMNSSDRALLNAIREINSMADRINLTKTIVDRAN 132
DA + K+Q R RT ++ +R L A+ EI+ MA + + +++ + A+
Sbjct: 97 DAYGRSISSKKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDRMASALGVPRSVREVAS 156
Query: 133 NLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGRCFKLIL 192
++++ + ++GRS + +++A LY ACR+EG+PR+ +EI VS++ +KEIGR ++ I
Sbjct: 157 VIYRRALNEDLIRGRSIEGVSTAALYAACRKEGIPRSLEEISEVSRVDRKEIGRTYRYIS 216
Query: 193 KALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIY 252
+ L + + ++ RF S L L VQ A I E ++ G+SP AAAAIY
Sbjct: 217 QELGLEMRPVDPKKYVPRFSSELELSEEVQSKANEIIETTAEQGLLSGKSPTGYAAAAIY 276
Query: 253 MASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
AS ++K++Q+E+ D+A V EVTIR Y+
Sbjct: 277 AASLLCNEKKTQREVADVAQVTEVTIRNRYQ 307
>gi|42557795|emb|CAF28768.1| putative transcription initiation factor TFIIB [uncultured
crenarchaeote]
Length = 304
Score = 154 bits (389), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 91/284 (32%), Positives = 156/284 (54%), Gaps = 11/284 (3%)
Query: 15 PLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLS 74
P++ D +G+ C CG VV +R+ + G EWR FS E+ D SR G P + ++ L+
Sbjct: 19 PMVTDNSSGEMFCGNCGFVVTERIEETGPEWRAFSKEEHE-DRSRAGIPTSLAMHDMGLA 77
Query: 75 TMIGPGRGDAS---FDGFGMSKYQNRRTMNSS-------DRALLNAIREINSMADRINLT 124
T+IGP DAS S + RT +S DR A E++ + D++ +
Sbjct: 78 TIIGPVDKDASGKPLSASMKSTIERLRTWDSRSQVHEPVDRNFRQAFSELDRLKDKLAVG 137
Query: 125 KTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEI 184
++++A ++++ + ++GRS A+ +A LY ACR PRT K+I S I KK++
Sbjct: 138 DAVIEKAAYVYRKALEKGLVRGRSISALVAAALYAACRDTETPRTLKDIAHASNIKKKDV 197
Query: 185 GRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPI 244
RC++L+++ L+ + ++ ++R S L ++ A I +KA + I G+ P+
Sbjct: 198 ARCYRLLIRELDLKMPVVDPVKCVARIASKSGLSEKTKRKALEILKKAEQGKISAGKDPM 257
Query: 245 SVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPH 288
+AAAA+Y+A + + ++QK++ + AGV EVTIR YK + H
Sbjct: 258 GLAAAALYVACVMNGENKTQKDVAEAAGVTEVTIRNRYKGLKIH 301
>gi|408403989|ref|YP_006861972.1| transcription initiation factor IIB [Candidatus Nitrososphaera
gargensis Ga9.2]
gi|408364585|gb|AFU58315.1| transcription initiation factor IIB [Candidatus Nitrososphaera
gargensis Ga9.2]
Length = 285
Score = 154 bits (389), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 91/283 (32%), Positives = 156/283 (55%), Gaps = 11/283 (3%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLST 75
++ D +G+ C CG VV +R+ ++G EWR FS E+ D SR G P + ++ L+T
Sbjct: 1 MVTDNSSGEMFCGNCGFVVSERIEELGPEWRAFSKEEHE-DRSRAGIPTSLAMHDMGLAT 59
Query: 76 MIGPGRGDAS---FDGFGMSKYQNRRTMNSS-------DRALLNAIREINSMADRINLTK 125
+IGP DAS S + RT +S DR A E++ + D++ +
Sbjct: 60 IIGPVDKDASGKPLSASMKSTIERLRTWDSRSQVHEPVDRNFRQAFSELDRLKDKLAVGD 119
Query: 126 TIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIG 185
++++A ++++ + ++GRS A+ +A LY ACR PRT K+I S I KK++
Sbjct: 120 AVIEKAAYVYRKALEKGLVRGRSISALVAAALYAACRDTETPRTLKDIANASNIKKKDVA 179
Query: 186 RCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPIS 245
RC++L+++ L+ + ++ ++R S L ++ A I +KA E I G+ P+
Sbjct: 180 RCYRLLIRELDLKMPVVDPVKCVARIASKAGLSEKTKRKALEILKKAEEGKISAGKDPMG 239
Query: 246 VAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPH 288
+AAAA+Y+A + + ++QK++ + AGV EVTIR YK + H
Sbjct: 240 LAAAALYVACVMNGENKTQKDVAEAAGVTEVTIRNRYKGLKTH 282
>gi|448321877|ref|ZP_21511352.1| transcription initiation factor TFB [Natronococcus amylolyticus DSM
10524]
gi|445602929|gb|ELY56900.1| transcription initiation factor TFB [Natronococcus amylolyticus DSM
10524]
Length = 317
Score = 154 bits (389), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 97/286 (33%), Positives = 156/286 (54%), Gaps = 12/286 (4%)
Query: 8 CYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPL 67
C E + ++ G++IC +CGLVV + +ID G EWR F N + SRVG P
Sbjct: 25 CSECGSSNVLRHSDQGERICEDCGLVVEESMIDSGPEWRAF-NHQERQKKSRVGAPTTQT 83
Query: 68 LNGSDLSTMIGPGRGDASFDGFG---------MSKYQNR-RTMNSSDRALLNAIREINSM 117
++ L+T I DA + K+Q R RT ++ +R L A+ EI+ M
Sbjct: 84 IHDKGLTTQIDWKDKDAYGRSLSSEKRSQMNRLRKWQKRIRTKDAGERNLQFALSEIDRM 143
Query: 118 ADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVS 177
A + + ++ + + L+++ + ++GRS + +A+A LY CRQEG+PR+ +E+ VS
Sbjct: 144 ASALGVPQSTREVTSVLYRRALEEDLIRGRSIEGVATAALYAGCRQEGLPRSLEEVTEVS 203
Query: 178 KISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDI 237
+I + E+ R ++ I L + I ++ RFCS L LP V+ A I + + +
Sbjct: 204 RIERIEVSRTYRYISSELGLEIRPIDPKQYVPRFCSALDLPQEVEAKAKEIIDETAD-PL 262
Query: 238 VPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
+ GR P AAAAIY AS ++K++Q+E+ D+A V EVTIR Y+
Sbjct: 263 LSGRGPSGFAAAAIYAASLLCNEKKTQREVADVAQVTEVTIRNRYQ 308
>gi|448425078|ref|ZP_21582707.1| transcription factor TFIIB cyclin-related protein [Halorubrum
terrestre JCM 10247]
gi|448510576|ref|ZP_21615953.1| transcription factor TFIIB cyclin-related protein [Halorubrum
distributum JCM 9100]
gi|448522305|ref|ZP_21618428.1| transcription factor TFIIB cyclin-related protein [Halorubrum
distributum JCM 10118]
gi|445681338|gb|ELZ33772.1| transcription factor TFIIB cyclin-related protein [Halorubrum
terrestre JCM 10247]
gi|445695849|gb|ELZ47948.1| transcription factor TFIIB cyclin-related protein [Halorubrum
distributum JCM 9100]
gi|445702249|gb|ELZ54207.1| transcription factor TFIIB cyclin-related protein [Halorubrum
distributum JCM 10118]
Length = 317
Score = 154 bits (389), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 93/271 (34%), Positives = 151/271 (55%), Gaps = 11/271 (4%)
Query: 23 GDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLSTMIGPGRG 82
G+ I E G+++ D ID G EWR F N + SRVG P ++ L+T I
Sbjct: 38 GELIHEETGMIIEDEQIDPGPEWRAF-NHNERQEKSRVGAPTTKTMHDKGLTTTIDWKDK 96
Query: 83 DASFDGFG---------MSKYQNR-RTMNSSDRALLNAIREINSMADRINLTKTIVDRAN 132
DA + K+Q R RT ++ +R L A+ EI+ MA + + +++ + A+
Sbjct: 97 DAYGRSISSKKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDRMASALGVPRSVREVAS 156
Query: 133 NLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGRCFKLIL 192
++++ + ++GRS + +++A LY ACR+EG+PR+ +EI VS++ +KEIGR ++ I
Sbjct: 157 VIYRRALNEDLIRGRSIEGVSTAALYAACRKEGIPRSLEEISEVSRVDRKEIGRTYRYIS 216
Query: 193 KALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIY 252
+ L + + ++ RF S L L VQ A I E ++ G+SP AAAAIY
Sbjct: 217 QELGLEMRPVDPKKYVPRFSSELELSEEVQSKANEIIETTAEQGLLSGKSPTGYAAAAIY 276
Query: 253 MASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
AS ++K++Q+E+ D+A V EVTIR Y+
Sbjct: 277 AASLLCNEKKTQREVADVAQVTEVTIRNRYQ 307
>gi|448321963|ref|ZP_21511437.1| Transcription factor TFIIB cyclin-related protein [Natronococcus
amylolyticus DSM 10524]
gi|445602545|gb|ELY56520.1| Transcription factor TFIIB cyclin-related protein [Natronococcus
amylolyticus DSM 10524]
Length = 321
Score = 154 bits (389), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 90/267 (33%), Positives = 153/267 (57%), Gaps = 11/267 (4%)
Query: 27 CSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLSTMIGPGRGDASF 86
C +CGL++ ++ ID G +WR F++++ SRVG P ++ L+T I DA
Sbjct: 46 CEDCGLLLEEKRIDHGPDWRAFTHQEQQ-KKSRVGAPTTRTMHDKGLTTSIDWKNKDAHG 104
Query: 87 DGFG---------MSKYQNR-RTMNSSDRALLNAIREINSMADRINLTKTIVDRANNLFK 136
+ K+Q R RT ++ +R L A+ E + MA + + +++ + A+ L++
Sbjct: 105 RSLSADKRSQMNRLRKWQTRIRTSDAGERNLQFALSETDRMASGLGIPRSVREVASVLYR 164
Query: 137 QVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGRCFKLILKALE 196
+ + ++GRS + +A+ LY ACR EG+PR+ +E+ VS++ +KEIGR ++ I K LE
Sbjct: 165 RALERDLIQGRSIEGVATGTLYAACRLEGMPRSLEEVAMVSRVDRKEIGRTYRYIAKELE 224
Query: 197 TSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQ 256
+ ++ RFCS L L VQ A+ I + I+ G+SP AAAAIY+++
Sbjct: 225 LGTKPVDPKQYVPRFCSELELSPTVQAKASEIIDTTAKKGILSGKSPTGYAAAAIYISAL 284
Query: 257 ASSDKRSQKEIGDIAGVAEVTIRQSYK 283
+KR+Q+E+ D++ V EVTIR+ Y+
Sbjct: 285 FCDEKRTQREVADVSQVTEVTIRKRYQ 311
>gi|448492136|ref|ZP_21608730.1| transcription factor TFIIB cyclin-related protein [Halorubrum
californiensis DSM 19288]
gi|445691595|gb|ELZ43779.1| transcription factor TFIIB cyclin-related protein [Halorubrum
californiensis DSM 19288]
Length = 317
Score = 154 bits (389), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 93/271 (34%), Positives = 151/271 (55%), Gaps = 11/271 (4%)
Query: 23 GDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLSTMIGPGRG 82
G+ I E G+++ D ID G EWR F N + SRVG P ++ L+T I
Sbjct: 38 GELIHEETGMIIEDEQIDPGPEWRAF-NHNERQEKSRVGAPTTKTMHDKGLTTTIDWKDK 96
Query: 83 DASFDGFG---------MSKYQNR-RTMNSSDRALLNAIREINSMADRINLTKTIVDRAN 132
DA + K+Q R RT ++ +R L A+ EI+ MA + + +++ + A+
Sbjct: 97 DAYGRSISSKKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDRMASALGVPRSVREVAS 156
Query: 133 NLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGRCFKLIL 192
++++ + ++GRS + +++A LY ACR+EG+PR+ +EI VS++ +KEIGR ++ I
Sbjct: 157 VIYRRALNEDLIRGRSIEGVSTAALYAACRKEGIPRSLEEISEVSRVDRKEIGRTYRYIS 216
Query: 193 KALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIY 252
+ L + + ++ RF S L L VQ A I E ++ G+SP AAAAIY
Sbjct: 217 QELGLEMRPVDPKKYVPRFSSELELSEEVQSKANEIIETTAEQGLLSGKSPTGYAAAAIY 276
Query: 253 MASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
AS ++K++Q+E+ D+A V EVTIR Y+
Sbjct: 277 AASLLCNEKKTQREVADVAQVTEVTIRNRYQ 307
>gi|329766227|ref|ZP_08257785.1| transcription initiation factor TFIIB [Candidatus Nitrosoarchaeum
limnia SFB1]
gi|329137286|gb|EGG41564.1| transcription initiation factor TFIIB [Candidatus Nitrosoarchaeum
limnia SFB1]
Length = 303
Score = 154 bits (389), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 84/286 (29%), Positives = 152/286 (53%), Gaps = 11/286 (3%)
Query: 8 CYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPL 67
C ++ D G+ CS+CG V DR+ G EWR+FS ++ G + +R G P +
Sbjct: 11 CQRCNRGAILTDSNTGEMFCSKCGFVATDRIEQEGPEWRSFSKDE-GDNRTRTGTPTSLA 69
Query: 68 LNGSDLSTMIGPGRGDASFDGFGMS---------KYQNRRTMNSS-DRALLNAIREINSM 117
++ L+T+I P DA+ S + NR ++ DR A E++ +
Sbjct: 70 IHDMGLATIINPINKDATGKPLSASMKSTIERLRTWDNRSQVHEPVDRNFRQAFSELDRL 129
Query: 118 ADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVS 177
++ L+ T++++ ++++ D ++GRS + +A LY ACR PRT ++
Sbjct: 130 KTKLALSDTVIEKTAYIYRKALDKGLVRGRSIPGLIAASLYAACRNTETPRTLSDVANSI 189
Query: 178 KISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDI 237
I +K+I RC++L+L+ L+ + ++ +SR SN L ++ A I +A ++++
Sbjct: 190 NIKRKDIARCYRLLLRELDLKMPVVNPVKCISRISSNAGLSEKTKRKAIEILDQAAKIEL 249
Query: 238 VPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
G+ P+ +AAAA+Y++ + + ++QK+I AGV EVTIR YK
Sbjct: 250 SAGKDPMGLAAAALYLSCVKNGEDKTQKDIAVAAGVTEVTIRNRYK 295
Score = 37.4 bits (85), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 42/78 (53%)
Query: 208 MSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEI 267
+ R + L+L + V + +I RKA++ +V GRS + AA++Y A + + R+ ++
Sbjct: 126 LDRLKTKLALSDTVIEKTAYIYRKALDKGLVRGRSIPGLIAASLYAACRNTETPRTLSDV 185
Query: 268 GDIAGVAEVTIRQSYKLM 285
+ + I + Y+L+
Sbjct: 186 ANSINIKRKDIARCYRLL 203
>gi|222479752|ref|YP_002565989.1| transcription factor TFIIB cyclin-related [Halorubrum lacusprofundi
ATCC 49239]
gi|222452654|gb|ACM56919.1| Transcription factor TFIIB cyclin-related [Halorubrum lacusprofundi
ATCC 49239]
Length = 326
Score = 154 bits (388), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 99/278 (35%), Positives = 153/278 (55%), Gaps = 13/278 (4%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTF-SNEKSGVDPSRVGGPENPLLNGSDLS 74
L D G+ +C +CGLVV + ID G EWR F S+EK + SRVG P +++ LS
Sbjct: 38 LASDTEHGETVCVDCGLVVEEDEIDRGPEWRAFDSSEKD--EKSRVGAPTTNMMHDKGLS 95
Query: 75 TMIGPGRGDA---SFDGFGMSKYQNRRTMN-------SSDRALLNAIREINSMADRINLT 124
T IG DA S K Q RT N S +R L A+ EI+ MA + L
Sbjct: 96 TNIGWQDKDAYGKSLSSRQREKMQRLRTWNERFRTRDSKERNLKQALGEIDRMASALGLP 155
Query: 125 KTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEI 184
+ + A+ ++++ D L GRS + ++++ LY A RQ G PR+ EI AVS++ K EI
Sbjct: 156 DNVRETASVIYRRALDEDLLPGRSIEGVSTSSLYAAARQAGTPRSLDEIAAVSRVEKDEI 215
Query: 185 GRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPI 244
R ++ +++ L+ + ++ RF S+L L + ++ A + A E + G+SP+
Sbjct: 216 ARTYRYVVRELKLEIQPADPESYVPRFASDLGLSDEAERRARSLLNTAKEQGLHSGKSPV 275
Query: 245 SVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSY 282
+AAAA+Y AS ++K +Q E+ D+A ++EVTIR Y
Sbjct: 276 GLAAAAVYAASLLVNEKVTQSEVSDVANISEVTIRNRY 313
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 49/78 (62%)
Query: 208 MSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEI 267
+ R S L LP+ V++ A+ I R+A++ D++PGRS V+ +++Y A++ + RS EI
Sbjct: 145 IDRMASALGLPDNVRETASVIYRRALDEDLLPGRSIEGVSTSSLYAAARQAGTPRSLDEI 204
Query: 268 GDIAGVAEVTIRQSYKLM 285
++ V + I ++Y+ +
Sbjct: 205 AAVSRVEKDEIARTYRYV 222
>gi|448450737|ref|ZP_21592470.1| transcription factor TFIIB cyclin-related protein [Halorubrum
litoreum JCM 13561]
gi|445811248|gb|EMA61256.1| transcription factor TFIIB cyclin-related protein [Halorubrum
litoreum JCM 13561]
Length = 317
Score = 154 bits (388), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 93/271 (34%), Positives = 151/271 (55%), Gaps = 11/271 (4%)
Query: 23 GDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLSTMIGPGRG 82
G+ I E G+++ D ID G EWR F N + SRVG P ++ L+T I
Sbjct: 38 GELIHEETGMIIEDEQIDPGPEWRAF-NHNERQEKSRVGAPTTKTMHDKGLTTTIDWKDK 96
Query: 83 DASFDGFG---------MSKYQNR-RTMNSSDRALLNAIREINSMADRINLTKTIVDRAN 132
DA + K+Q R RT ++ +R L A+ EI+ MA + + +++ + A+
Sbjct: 97 DAYGRSISSKKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDRMASALGVPRSVREVAS 156
Query: 133 NLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGRCFKLIL 192
++++ + ++GRS + +++A LY ACR+EG+PR+ +EI VS++ +KEIGR ++ I
Sbjct: 157 VIYRRALNEDLIRGRSIEGVSTAALYAACRKEGIPRSLEEISEVSRVDRKEIGRTYRYIS 216
Query: 193 KALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIY 252
+ L + + ++ RF S L L VQ A I E ++ G+SP AAAAIY
Sbjct: 217 QELGLEMRPVDPKKYVPRFSSELELSEEVQSKANEIIETTAEQGLLSGKSPTGYAAAAIY 276
Query: 253 MASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
AS ++K++Q+E+ D+A V EVTIR Y+
Sbjct: 277 AASLLCNEKKTQREVADVAQVTEVTIRNRYQ 307
>gi|193084026|gb|ACF09700.1| intein-containing transcription factor TFIIB cyclin-related protein
[uncultured marine crenarchaeote AD1000-202-A2]
Length = 307
Score = 154 bits (388), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 92/288 (31%), Positives = 157/288 (54%), Gaps = 12/288 (4%)
Query: 2 NINKVCCYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVG 61
N+ K C A ++ D G+ CS CG V +++ + G EWR+FSN+ G D SRVG
Sbjct: 12 NLGKQRCPSCTKAKMVLDENTGELFCSFCGFVEAEKITEGGPEWRSFSND--GGDRSRVG 69
Query: 62 GPENPLLNGSDLSTMIGPGRGDASFDGF--GMSKYQNR-RTMNS-------SDRALLNAI 111
+ ++ LST+IG DA+ M K R RT +S ++R L A+
Sbjct: 70 AGTSITMHDMGLSTIIGAQNKDATGKPLESSMKKSIERLRTWDSRSQAHSSAERNLRQAL 129
Query: 112 REINSMADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFK 171
E++ + D++ LT ++++A ++++ + K +KGRS + +AC+Y ACR PRT
Sbjct: 130 SEMDKLKDKLTLTDNVIEKAAYIYRKAIERKLVKGRSIHGLVAACIYAACRITETPRTLD 189
Query: 172 EICAVSKISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARK 231
+I I +K++ R +++I + L+ + + +SR S L ++ A + K
Sbjct: 190 DIAEGINIKRKDVARSYRIIFRELDLKIPVADPVKGVSRIASLAGLGEATKRKALILLNK 249
Query: 232 AVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIR 279
A ++ +V G+ P+ +AAAA+Y+A ++ ++QKEI +GV EVTIR
Sbjct: 250 AKKIGMVAGKDPMGIAAAALYLACISTGGNKTQKEISIASGVTEVTIR 297
Score = 43.1 bits (100), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 43/79 (54%)
Query: 208 MSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEI 267
M + L+L + V + A +I RKA+E +V GRS + AA IY A + + R+ +I
Sbjct: 132 MDKLKDKLTLTDNVIEKAAYIYRKAIERKLVKGRSIHGLVAACIYAACRITETPRTLDDI 191
Query: 268 GDIAGVAEVTIRQSYKLMY 286
+ + + +SY++++
Sbjct: 192 AEGINIKRKDVARSYRIIF 210
>gi|448732994|ref|ZP_21715240.1| transcription initiation factor TFB 2 [Halococcus salifodinae DSM
8989]
gi|445803327|gb|EMA53624.1| transcription initiation factor TFB 2 [Halococcus salifodinae DSM
8989]
Length = 323
Score = 154 bits (388), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 91/285 (31%), Positives = 152/285 (53%), Gaps = 13/285 (4%)
Query: 13 DAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSD 72
D L D G++ CSECGLVV + ID G EWR + +K + SRVG P L++
Sbjct: 30 DGRLTHDSEHGERACSECGLVVDEDEIDHGPEWRAHT-QKERNEKSRVGAPTTNLMHDKG 88
Query: 73 LSTMIGPGRGDASFDGFGMSKYQNR----------RTMNSSDRALLNAIREINSMADRIN 122
LST I DA + K Q RT N +R+L A+ EI M+ +
Sbjct: 89 LSTKISWQDKDAYGNTLSSQKRQQMQRLRTWDERFRTRNPKERSLKQALSEIERMSSALG 148
Query: 123 LTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKK 182
L K++ + A ++++ + L GRS + +++A L+IA RQ +PR+ + VS+I K
Sbjct: 149 LPKSVRETAGVIYRRALEENLLPGRSVEGVSTAALHIASRQANIPRSLDTLTEVSRIGKL 208
Query: 183 EIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELD--IVPG 240
I R ++ + + LE ++ +++ RF S L + V++ + + E + + G
Sbjct: 209 PITRTYQYVARELEINLPPADPLEYLPRFVSALDRSDEVERRSRELLETVSEDEPSYLSG 268
Query: 241 RSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLM 285
++P+ +AAAA+Y S ++K +QK +G++A ++EVTIR YK +
Sbjct: 269 KNPVGLAAAAVYAGSLLCNEKVTQKAVGEVADISEVTIRNRYKEL 313
>gi|448305704|ref|ZP_21495633.1| transcription initiation factor IIB [Natronorubrum sulfidifaciens
JCM 14089]
gi|445588162|gb|ELY42408.1| transcription initiation factor IIB [Natronorubrum sulfidifaciens
JCM 14089]
Length = 325
Score = 154 bits (388), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 98/278 (35%), Positives = 154/278 (55%), Gaps = 13/278 (4%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTF-SNEKSGVDPSRVGGPENPLLNGSDLS 74
L+ D + +C +CGLVV + ID G EWR F ++EK + SRVG P +++ LS
Sbjct: 38 LVSDTEHAETVCDDCGLVVDEGEIDRGPEWRAFDASEKD--EKSRVGAPTTNMMHDQGLS 95
Query: 75 TMIGPGRGDA---SFDGFGMSKYQNRRTMN-------SSDRALLNAIREINSMADRINLT 124
T IG DA S K Q RT N S +R L A+ EI+ MA + L
Sbjct: 96 TNIGWQNKDAYGKSLSSRQRQKMQRLRTWNERFRTRDSKERNLKQALGEIDRMASALGLP 155
Query: 125 KTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEI 184
K + + A+ ++++ + L GRS + +A++ LY A RQ G PR+ EI AVS++ K EI
Sbjct: 156 KNVRETASVIYRRALEEDLLPGRSIEGVATSALYAAARQAGTPRSLDEIAAVSRVEKDEI 215
Query: 185 GRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPI 244
R ++ +++ L V ++ RF S+L L + ++ A + A E I G+SP+
Sbjct: 216 ARTYRYVIRELGLEVQPADPESYVPRFASDLDLSDETERRARSLLSSAKEQGIHSGKSPV 275
Query: 245 SVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSY 282
+AAAA+Y A+ +++K +Q ++ D+A ++EVTIR Y
Sbjct: 276 GLAAAAVYAAALLTNEKVTQNDVSDVASISEVTIRNRY 313
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 48/78 (61%)
Query: 208 MSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEI 267
+ R S L LP V++ A+ I R+A+E D++PGRS VA +A+Y A++ + RS EI
Sbjct: 145 IDRMASALGLPKNVRETASVIYRRALEEDLLPGRSIEGVATSALYAAARQAGTPRSLDEI 204
Query: 268 GDIAGVAEVTIRQSYKLM 285
++ V + I ++Y+ +
Sbjct: 205 AAVSRVEKDEIARTYRYV 222
>gi|433590514|ref|YP_007280010.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natrinema pellirubrum DSM
15624]
gi|433305294|gb|AGB31106.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natrinema pellirubrum DSM
15624]
Length = 325
Score = 154 bits (388), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 98/290 (33%), Positives = 158/290 (54%), Gaps = 13/290 (4%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTF-SNEKSGVDPSRVGGPENPLLNGSDLS 74
L+ D + +C++CGLVV + ID G EWR F + EK + SRVG P +++ LS
Sbjct: 37 LVSDDEHAETVCTDCGLVVEEDEIDRGPEWRAFDAAEKD--EKSRVGAPTTNMMHDQGLS 94
Query: 75 TMIGPGRGDA---SFDGFGMSKYQNRRTMN-------SSDRALLNAIREINSMADRINLT 124
T IG DA S K Q RT N S +R L A+ EI+ MA + L
Sbjct: 95 TNIGWQDKDAYGRSLSSRQRQKMQRLRTWNERFRTRDSKERNLKQALGEIDRMASALGLP 154
Query: 125 KTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEI 184
+ + + A+ ++++ + L GRS + +A+A LY A RQ G PR+ EI AVS++ K E+
Sbjct: 155 ENVRETASVIYRRALEEDLLPGRSIEGVATASLYAAARQAGTPRSLDEISAVSRVEKMEL 214
Query: 185 GRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPI 244
R ++ I++ L V ++ RF S+L L + ++ A + A + + G+SP+
Sbjct: 215 TRTYRYIIRELGLEVKPADPEHYVPRFVSDLDLSDETERMARELLESARQEGVHSGKSPV 274
Query: 245 SVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKLFP 294
+AAA++Y A+ +++K +Q E+ D+A ++EVTIR YK + + P
Sbjct: 275 GLAAASVYAAALLTNEKVTQNEVSDVASISEVTIRNRYKELLEASDTAAP 324
>gi|448383049|ref|ZP_21562478.1| Transcription factor TFIIB cyclin-related protein [Haloterrigena
thermotolerans DSM 11522]
gi|445660229|gb|ELZ13026.1| Transcription factor TFIIB cyclin-related protein [Haloterrigena
thermotolerans DSM 11522]
Length = 325
Score = 153 bits (387), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 98/290 (33%), Positives = 158/290 (54%), Gaps = 13/290 (4%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTF-SNEKSGVDPSRVGGPENPLLNGSDLS 74
L+ D + +C++CGLVV + ID G EWR F + EK + SRVG P +++ LS
Sbjct: 37 LVSDDEHAETVCTDCGLVVEEDEIDRGPEWRAFDAAEKD--EKSRVGAPTTNMMHDQGLS 94
Query: 75 TMIGPGRGDA---SFDGFGMSKYQNRRTMN-------SSDRALLNAIREINSMADRINLT 124
T IG DA S K Q RT N S +R L A+ EI+ MA + L
Sbjct: 95 TNIGWQDKDAYGRSLSSRQRQKMQRLRTWNERFRTRDSKERNLKQALGEIDRMASALGLP 154
Query: 125 KTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEI 184
+ + + A+ ++++ + L GRS + +A+A LY A RQ G PR+ EI AVS++ K E+
Sbjct: 155 ENVRETASVIYRRALEEDLLPGRSIEGVATASLYAAARQAGTPRSLDEISAVSRVEKMEL 214
Query: 185 GRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPI 244
R ++ I++ L V ++ RF S+L L + ++ A + A + + G+SP+
Sbjct: 215 TRTYRYIIRELGLEVKPADPEHYVPRFVSDLDLSDETERMARELLESARQEGVHSGKSPV 274
Query: 245 SVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKLFP 294
+AAA++Y A+ +++K +Q E+ D+A ++EVTIR YK + + P
Sbjct: 275 GLAAASVYAAALLTNEKVTQNEVSDVASISEVTIRNRYKELLEASDTAAP 324
>gi|424813973|ref|ZP_18239151.1| transcription initiation factor TFIIB [Candidatus Nanosalina sp.
J07AB43]
gi|339757589|gb|EGQ42846.1| transcription initiation factor TFIIB [Candidatus Nanosalina sp.
J07AB43]
Length = 360
Score = 153 bits (387), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 102/297 (34%), Positives = 159/297 (53%), Gaps = 10/297 (3%)
Query: 6 VCCYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPEN 65
+ C E ED G+ IC CG V+ + ID +E+R F+ E+ +R G P
Sbjct: 61 LTCSECGGQQFEEDSSKGELICISCGTVIDEDRIDKSAEYRAFNAEEK-EKKARAGQPLT 119
Query: 66 PLLNGSDLSTMIGPGRGDA-SFDGFGMSKY-----QNRRTMNSSDRALLNAIREINSMAD 119
+ +ST IG G G+ G ++Y ++R S DR L A+ E+NSM
Sbjct: 120 YTKHDMGVSTEIGKGSGELYKVSGNKRAQYYRLRKWHKRLTKSKDRNLGFALSELNSMIS 179
Query: 120 RINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKI 179
+NL +++ + L+++ D ++GRS ++I SA +YI R++G PRT EI S I
Sbjct: 180 NLNLPESVHEETARLYEKSVDQGLVRGRSMESIISAIIYIVARKQGTPRTLDEISDASGI 239
Query: 180 SKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVP 239
K+EIGR ++ + + L + D++ RF L L VQ A I ++A E D++
Sbjct: 240 EKREIGRAYRYVARELGLRILPAKPQDYVPRFAGKLQLSGEVQARARQILKEARERDLLS 299
Query: 240 GRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKLFPQD 296
G+ P +AAAA+Y+A+ +KR+Q+E+ D+ GV EVTIR YK + A KL +D
Sbjct: 300 GKGPTGLAAAALYIAAVLEGEKRTQREVADVVGVTEVTIRNRYKEL---AEKLGLED 353
>gi|448586312|ref|ZP_21648386.1| transcription initiation factor TFB [Haloferax gibbonsii ATCC
33959]
gi|445724967|gb|ELZ76593.1| transcription initiation factor TFB [Haloferax gibbonsii ATCC
33959]
Length = 318
Score = 153 bits (387), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 98/288 (34%), Positives = 155/288 (53%), Gaps = 13/288 (4%)
Query: 6 VCCYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTF-SNEKSGVDPSRVGGPE 64
+ C E L+ D G+ +C +CGLVV + ID G EWR F S+EK SRVG P
Sbjct: 20 LSCPECDSESLVADSEHGETVCEDCGLVVEENEIDHGPEWRAFNSSEKD--QKSRVGAPT 77
Query: 65 NPLLNGSDLSTMIGPGRGDA---SFDGFGMSKYQNRRTMN-------SSDRALLNAIREI 114
+++ LST IG DA S K Q RT N S +R L A+ EI
Sbjct: 78 TNMMHDKGLSTNIGWQNKDAYGRSLSSRQREKMQRLRTWNERFRTRDSKERNLKQALGEI 137
Query: 115 NSMADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEIC 174
+ MA + L + + A+ ++++ D L GRS + +A++ LY A R PR+ EI
Sbjct: 138 DRMASALGLPDNVRETASVIYRRALDDDLLPGRSIEGVATSALYAAARMADTPRSLDEIT 197
Query: 175 AVSKISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVE 234
+VS++ K EI R ++ +++ L+ + ++ RF S L L + ++ A + + A E
Sbjct: 198 SVSRVEKDEIARTYRYVVRELKLEIKPADPEQYVPRFASELGLSDESERRARQLLKNAKE 257
Query: 235 LDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSY 282
+ G+SP+ +AAAA+Y AS +++K +Q E+ ++A ++EVTIR Y
Sbjct: 258 QGVHSGKSPVGLAAAAVYAASLLTNEKVTQNEVSEVANISEVTIRNRY 305
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 49/78 (62%)
Query: 208 MSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEI 267
+ R S L LP+ V++ A+ I R+A++ D++PGRS VA +A+Y A++ + RS EI
Sbjct: 137 IDRMASALGLPDNVRETASVIYRRALDDDLLPGRSIEGVATSALYAAARMADTPRSLDEI 196
Query: 268 GDIAGVAEVTIRQSYKLM 285
++ V + I ++Y+ +
Sbjct: 197 TSVSRVEKDEIARTYRYV 214
>gi|15228689|ref|NP_189584.1| transcription initiation factor TFIIB [Arabidopsis thaliana]
gi|11994519|dbj|BAB02583.1| transcription initiation factor IIB (TFIIB)-like protein
[Arabidopsis thaliana]
gi|332644057|gb|AEE77578.1| transcription initiation factor TFIIB [Arabidopsis thaliana]
Length = 336
Score = 153 bits (387), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 106/306 (34%), Positives = 158/306 (51%), Gaps = 20/306 (6%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNE--KSGVDPSRVGGPENPLLNGSDL 73
++ D+ +GD ICSECGLV+ +I+ EWRTF+++ S DP+RVG NP L DL
Sbjct: 15 MVVDHSSGDTICSECGLVLEAHIIEYSQEWRTFASDDNHSDRDPNRVGAATNPFLKSGDL 74
Query: 74 STMIGPGRGDASF----DGFGMSKYQNRRTMNSSDRALLNAIREINSMADRINLTKTIVD 129
T+I + AS D + + N + + A EI M D ++L I
Sbjct: 75 VTIIEKPKETASSVLSKDDISTLFRAHNQVKNHEEDLIKQAFEEIQRMTDALDLDIVINS 134
Query: 130 RANNLFKQVHDGKNLK---GRSNDAIASACLYIACRQEGVPRTFKEICAVSK-ISKKEIG 185
RA + + N K G+ +AI +A + ACR+ + RT KEI V+ + KK+I
Sbjct: 135 RACEIVSKYDGHANTKLRRGKKLNAICAASVSTACRELQLSRTLKEIAEVANGVDKKDIR 194
Query: 186 R---CFKLILKALETSVD----LITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIV 238
+ K +L++ +TSV +I TG+ + RFCS L + A KA DI
Sbjct: 195 KESLVIKRVLESHQTSVSASQAIINTGELVRRFCSKLDISQREIMAIPEAVEKAENFDI- 253
Query: 239 PGRSPISVAAAAIYMASQAS-SDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKLFPQDF 297
R+P SV AA I+M S S ++++ +EIG +A V E TI+ S K MYP+A K+ P +
Sbjct: 254 -RRNPKSVLAAIIFMISHISQTNRKPIREIGIVAEVVENTIKNSVKDMYPYALKIIPNWY 312
Query: 298 VFHTPI 303
+ I
Sbjct: 313 ACESDI 318
>gi|383625175|ref|ZP_09949581.1| transcription initiation factor IIB [Halobiforma lacisalsi AJ5]
Length = 329
Score = 153 bits (387), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 97/278 (34%), Positives = 155/278 (55%), Gaps = 13/278 (4%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTF-SNEKSGVDPSRVGGPENPLLNGSDLS 74
L+ D + +C +CGLVV + ID G EWR F + EK + SRVG P +++ LS
Sbjct: 42 LVSDAEHAETVCEDCGLVVDEGEIDRGPEWRAFDAAEKD--EKSRVGAPTTNMMHDQGLS 99
Query: 75 TMIGPGRGDA---SFDGFGMSKYQNRRTMN-------SSDRALLNAIREINSMADRINLT 124
T IG DA S K Q RT N S +R L A+ EI+ MA + L
Sbjct: 100 TNIGWQDKDAYGRSLSSRQRQKMQRLRTWNERFRTRDSKERNLKQALGEIDRMASALGLP 159
Query: 125 KTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEI 184
+ + + A+ ++++ + L GRS + +A+A LY A RQ G PR+ EI AVS++ K EI
Sbjct: 160 ENVRETASVIYRRALEEDLLPGRSIEGVATASLYAAARQAGTPRSLDEISAVSRVEKDEI 219
Query: 185 GRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPI 244
R ++ +++ L V ++ RF S+L LP+ ++ A + + A + I G+SP+
Sbjct: 220 ARTYRYVVRELGLEVQPADPESYVPRFASDLELPDETERRARRLLKTAKDEGIHSGKSPV 279
Query: 245 SVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSY 282
+AAAA+Y A+ +++K +Q ++ ++A ++EVTIR Y
Sbjct: 280 GLAAAAVYAAALLTNEKVTQNDVSEVASISEVTIRNRY 317
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 48/78 (61%)
Query: 208 MSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEI 267
+ R S L LP V++ A+ I R+A+E D++PGRS VA A++Y A++ + RS EI
Sbjct: 149 IDRMASALGLPENVRETASVIYRRALEEDLLPGRSIEGVATASLYAAARQAGTPRSLDEI 208
Query: 268 GDIAGVAEVTIRQSYKLM 285
++ V + I ++Y+ +
Sbjct: 209 SAVSRVEKDEIARTYRYV 226
>gi|448602605|ref|ZP_21656540.1| transcription initiation factor TFB [Haloferax sulfurifontis ATCC
BAA-897]
gi|448625071|ref|ZP_21670838.1| transcription initiation factor TFB [Haloferax denitrificans ATCC
35960]
gi|445746957|gb|ELZ98414.1| transcription initiation factor TFB [Haloferax sulfurifontis ATCC
BAA-897]
gi|445748833|gb|EMA00279.1| transcription initiation factor TFB [Haloferax denitrificans ATCC
35960]
Length = 318
Score = 153 bits (387), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 98/286 (34%), Positives = 155/286 (54%), Gaps = 13/286 (4%)
Query: 8 CYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTF-SNEKSGVDPSRVGGPENP 66
C E L+ D G+ +C +CGLVV + ID G EWR F S+EK SRVG P
Sbjct: 22 CPECGSESLVSDTEHGETVCDDCGLVVEENEIDHGPEWRAFNSSEKD--QKSRVGAPTTN 79
Query: 67 LLNGSDLSTMIGPGRGDA---SFDGFGMSKYQNRRTMN-------SSDRALLNAIREINS 116
+++ LST IG DA S K Q RT N S +R L A+ EI+
Sbjct: 80 MMHDKGLSTNIGWQNKDAYGRSLSSRQREKMQRLRTWNERFRTRDSKERNLKQALGEIDR 139
Query: 117 MADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAV 176
MA + L + + A+ ++++ D L GRS + +A++ LY A R PR+ EI +V
Sbjct: 140 MASALGLPDNVRETASVIYRRALDDDLLPGRSIEGVATSALYAAARMADTPRSLDEITSV 199
Query: 177 SKISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELD 236
S++ K EI R ++ +++ L+ + ++ RF S+L L + ++ A + + A E
Sbjct: 200 SRVEKDEIARTYRYVVRELKLEIKPADPEQYVPRFASDLGLSDESERRARQLLKNAKEQG 259
Query: 237 IVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSY 282
+ G+SP+ +AAAA+Y AS +++K +Q E+ ++A ++EVTIR Y
Sbjct: 260 VHSGKSPVGLAAAAVYAASLLTNEKVTQNEVSEVANISEVTIRNRY 305
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 49/78 (62%)
Query: 208 MSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEI 267
+ R S L LP+ V++ A+ I R+A++ D++PGRS VA +A+Y A++ + RS EI
Sbjct: 137 IDRMASALGLPDNVRETASVIYRRALDDDLLPGRSIEGVATSALYAAARMADTPRSLDEI 196
Query: 268 GDIAGVAEVTIRQSYKLM 285
++ V + I ++Y+ +
Sbjct: 197 TSVSRVEKDEIARTYRYV 214
>gi|408402853|ref|YP_006860836.1| transcription initiation factor IIB [Candidatus Nitrososphaera
gargensis Ga9.2]
gi|408363449|gb|AFU57179.1| transcription initiation factor IIB [Candidatus Nitrososphaera
gargensis Ga9.2]
Length = 292
Score = 153 bits (386), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 85/281 (30%), Positives = 154/281 (54%), Gaps = 12/281 (4%)
Query: 13 DAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSD 72
D L+ D +G+ +CS+CGLV DRV + +EWR F++E +G SRVG P + +
Sbjct: 5 DQQLVTDLESGEIVCSKCGLVSSDRVQESRAEWRIFNSESNG--RSRVGSPSSLAYHDMG 62
Query: 73 LSTMIGPGRGDASFDGFGMS---KYQNRRTMN-------SSDRALLNAIREINSMADRIN 122
L+T+IG D+S S Q RT + + R L++A E+ + D++
Sbjct: 63 LATVIGKENRDSSGHQLEPSMNASIQRLRTWDFRSQAHSPTKRNLMHAFSELGRLKDKLG 122
Query: 123 LTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKK 182
L+ I+++ L+++ H+ ++GRS +I +A +Y +CR+ G RT K++ + I +K
Sbjct: 123 LSDAIMEKTAYLYRKAHEKHLVRGRSTSSILAAAIYASCRELGASRTLKDVAKATDIKRK 182
Query: 183 EIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRS 242
I R +++++ L+ V L +++ ++ L ++ A + +I G+
Sbjct: 183 AISRSYRILVLELDIKVPLADPMKCIAKIANSAKLTEKTKRMAMDTMNDLIGKEISAGKL 242
Query: 243 PISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
P+ +AA +YM+ A+ + ++QK+I D+AGV EVTIR +K
Sbjct: 243 PMGLAATVLYMSCLANGESKTQKDIADMAGVTEVTIRNRFK 283
Score = 42.0 bits (97), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 44/89 (49%)
Query: 197 TSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQ 256
T +L+ + R L L + + + ++ RKA E +V GRS S+ AAAIY + +
Sbjct: 103 TKRNLMHAFSELGRLKDKLGLSDAIMEKTAYLYRKAHEKHLVRGRSTSSILAAAIYASCR 162
Query: 257 ASSDKRSQKEIGDIAGVAEVTIRQSYKLM 285
R+ K++ + I +SY+++
Sbjct: 163 ELGASRTLKDVAKATDIKRKAISRSYRIL 191
>gi|321260170|ref|XP_003194805.1| transcription initiation factor IIB [Cryptococcus gattii WM276]
gi|317461277|gb|ADV23018.1| Transcription initiation factor IIB, putative [Cryptococcus gattii
WM276]
Length = 438
Score = 153 bits (386), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 101/308 (32%), Positives = 163/308 (52%), Gaps = 34/308 (11%)
Query: 1 MNINKVCCYEHPDAP-LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSR 59
+NI ++C D P ++E+Y GD ++GDR++D SEWRTF+ +++G DPSR
Sbjct: 71 LNIKQICPNCRTDPPNIVEEYAKGD--------LLGDRIVDTRSEWRTFAGDENGDDPSR 122
Query: 60 VGGPENPLLNGSDLSTMIG--PGRGDASFDGFGMSKYQNRRTMNS------SDRALLNAI 111
VG NPLL + L TMI GR + D +++ Q R S S A L+A+
Sbjct: 123 VGDAGNPLLGSNHLDTMISHKDGRTGIARD---LNRAQARANTLSNGIYGKSSVAQLSAV 179
Query: 112 -REINSMADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTF 170
I D + L + + +RA +++K V + + +KG++ A+ +AC+ ACR V RTF
Sbjct: 180 FSRIGEKCDAMQLPRGVRERAQHVYKIVDEARAIKGKNEPAVIAACIVYACRDAKVHRTF 239
Query: 171 KEICAVSKISKKEIGRCFKLILKALETS------VDLITTGD-------FMSRFCSNLSL 217
+E+C KISKKE+G+ F + +++S V + + + + RF + L L
Sbjct: 240 QEVCKALKISKKELGQVFNHVKSVVQSSSAQGSMVSVHGSNNAQESAEGLLGRFANYLDL 299
Query: 218 PNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVT 277
N V + HIA +AV + GRSP+S+AA +Y + K+I + GV+E T
Sbjct: 300 GNAVFNVSKHIAGEAVAKSAIDGRSPVSIAAGVLYFTCVLLGKSTTAKDISAMGGVSEST 359
Query: 278 IRQSYKLM 285
+ K++
Sbjct: 360 TKLITKMV 367
>gi|448439368|ref|ZP_21588009.1| transcription factor TFIIB cyclin-related protein [Halorubrum
saccharovorum DSM 1137]
gi|445691419|gb|ELZ43610.1| transcription factor TFIIB cyclin-related protein [Halorubrum
saccharovorum DSM 1137]
Length = 326
Score = 153 bits (386), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 98/277 (35%), Positives = 150/277 (54%), Gaps = 11/277 (3%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLST 75
L D G+ +C +CGLVV + ID G EWR F + K + SRVG P +++ LST
Sbjct: 38 LATDTEHGETVCVDCGLVVEEDEIDRGPEWRAF-DSKEKDEKSRVGAPTTNMMHDKGLST 96
Query: 76 MIGPGRGDA---SFDGFGMSKYQNRRTMN-------SSDRALLNAIREINSMADRINLTK 125
IG DA S K Q RT N S +R L A+ EI+ MA + L
Sbjct: 97 NIGWQDKDAYGKSLSSRQREKMQRLRTWNERFRTRDSKERNLKQALGEIDRMASALGLPD 156
Query: 126 TIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIG 185
+ + A+ ++++ D L GRS + +++A LY A RQ G PR+ EI AVS++ K EI
Sbjct: 157 NVRETASVIYRRALDEDLLPGRSIEGVSTASLYAAARQAGTPRSLDEISAVSRVEKDEIA 216
Query: 186 RCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPIS 245
R ++ +++ L+ + ++ RF S+L L + ++ A + A I G+SP+
Sbjct: 217 RTYRYVVRELKLEIQPADPESYVPRFASDLGLSDEAERRARSLLDTAKSQGIHSGKSPVG 276
Query: 246 VAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSY 282
+AAAA+Y AS ++K +Q E+ D+A ++EVTIR Y
Sbjct: 277 LAAAAVYAASLLVNEKVTQSEVSDVANISEVTIRNRY 313
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 49/78 (62%)
Query: 208 MSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEI 267
+ R S L LP+ V++ A+ I R+A++ D++PGRS V+ A++Y A++ + RS EI
Sbjct: 145 IDRMASALGLPDNVRETASVIYRRALDEDLLPGRSIEGVSTASLYAAARQAGTPRSLDEI 204
Query: 268 GDIAGVAEVTIRQSYKLM 285
++ V + I ++Y+ +
Sbjct: 205 SAVSRVEKDEIARTYRYV 222
>gi|448288563|ref|ZP_21479761.1| transcription initiation factor iib (tfiib) [Halogeometricum
borinquense DSM 11551]
gi|445568948|gb|ELY23523.1| transcription initiation factor iib (tfiib) [Halogeometricum
borinquense DSM 11551]
Length = 318
Score = 153 bits (386), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 99/299 (33%), Positives = 158/299 (52%), Gaps = 11/299 (3%)
Query: 5 KVCCYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPE 64
+ C E + L D G+ +C +CGLVV + ID G EWR F + + SRVG P
Sbjct: 20 ETLCPECGSSNLTTDAEHGETVCDDCGLVVEEDEIDRGPEWRAF-DAREKDQKSRVGAPT 78
Query: 65 NPLLNGSDLSTMIGPGRGDA---SFDGFGMSKYQNRRTMN-------SSDRALLNAIREI 114
+++ LST IG DA S K Q RT N + +R L A+ EI
Sbjct: 79 TNMMHDRGLSTNIGWQNKDAYGNSLSSTQRQKMQRLRTWNERFRTRDAKERNLKQALGEI 138
Query: 115 NSMADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEIC 174
+ MA + L + + + A+ ++++ D L GRS + +A++ LY A RQ G PR+ E+
Sbjct: 139 DRMASALGLPENVRETASVIYRRALDDDLLPGRSIEGVATSALYAAARQAGTPRSLDELE 198
Query: 175 AVSKISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVE 234
VS++ K EI R ++ +++ L ++ ++ RF S L L + ++ A + R A E
Sbjct: 199 TVSRVDKDEISRTYRYVVRELNLEIEPADPEQYVPRFASELGLNDESERHARQLLRTAKE 258
Query: 235 LDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKLF 293
I G+SP+ +AAAAIY AS +++K +Q E+ ++A ++EVTIR Y + +L
Sbjct: 259 QGIHSGKSPVGLAAAAIYAASLLANEKVTQSEVSEVANISEVTIRNRYHELLEAEEQLM 317
>gi|313126970|ref|YP_004037240.1| transcription initiation factor iib (tfiib) [Halogeometricum
borinquense DSM 11551]
gi|312293335|gb|ADQ67795.1| Transcription initiation factor IIB (TFIIB) [Halogeometricum
borinquense DSM 11551]
Length = 327
Score = 153 bits (386), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 99/299 (33%), Positives = 158/299 (52%), Gaps = 11/299 (3%)
Query: 5 KVCCYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPE 64
+ C E + L D G+ +C +CGLVV + ID G EWR F + + SRVG P
Sbjct: 29 ETLCPECGSSNLTTDAEHGETVCDDCGLVVEEDEIDRGPEWRAF-DAREKDQKSRVGAPT 87
Query: 65 NPLLNGSDLSTMIGPGRGDA---SFDGFGMSKYQNRRTMN-------SSDRALLNAIREI 114
+++ LST IG DA S K Q RT N + +R L A+ EI
Sbjct: 88 TNMMHDRGLSTNIGWQNKDAYGNSLSSTQRQKMQRLRTWNERFRTRDAKERNLKQALGEI 147
Query: 115 NSMADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEIC 174
+ MA + L + + + A+ ++++ D L GRS + +A++ LY A RQ G PR+ E+
Sbjct: 148 DRMASALGLPENVRETASVIYRRALDDDLLPGRSIEGVATSALYAAARQAGTPRSLDELE 207
Query: 175 AVSKISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVE 234
VS++ K EI R ++ +++ L ++ ++ RF S L L + ++ A + R A E
Sbjct: 208 TVSRVDKDEISRTYRYVVRELNLEIEPADPEQYVPRFASELGLNDESERHARQLLRTAKE 267
Query: 235 LDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKLF 293
I G+SP+ +AAAAIY AS +++K +Q E+ ++A ++EVTIR Y + +L
Sbjct: 268 QGIHSGKSPVGLAAAAIYAASLLANEKVTQSEVSEVANISEVTIRNRYHELLEAEEQLM 326
>gi|389860462|ref|YP_006362701.1| transcription initiation factor IIB [Thermogladius cellulolyticus
1633]
gi|388525365|gb|AFK50563.1| transcription initiation factor IIB [Thermogladius cellulolyticus
1633]
Length = 316
Score = 153 bits (386), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 95/281 (33%), Positives = 154/281 (54%), Gaps = 10/281 (3%)
Query: 12 PDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGS 71
P +I D+ G+ +C E G V+ +RVID +EWR F+ E+ +R GGP ++
Sbjct: 23 PPNKIIFDHGKGEYVCLETGEVIEERVIDERAEWRAFTPEERE-RRARTGGPITGTVHDM 81
Query: 72 DLSTMIGPGRGDASFDGF--------GMSKYQNR-RTMNSSDRALLNAIREINSMADRIN 122
+T I DAS + K+Q R R +S DR L A+ E+ +A+ +N
Sbjct: 82 GFATSIDYADKDASGRRIIEKKAQLQKLRKWQARTRIQSSVDRNLAQALNELERIAELLN 141
Query: 123 LTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKK 182
L + + A +++ + ++GRS +++ +A +Y+ACR+ VPR+ EI ++I +K
Sbjct: 142 LPTHVREEAARIYRMAVEKGLVRGRSIESVIAAAVYVACREARVPRSLDEITKYTRIPRK 201
Query: 183 EIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRS 242
EI RC++L+L+ L V + DF+ R L L + K AT I K + G+
Sbjct: 202 EIARCYRLLLRELGIKVTAVDPIDFIPRIAHALGLSGEIIKNATEILNKVRNKGVTAGKD 261
Query: 243 PISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
P +AAAA+Y+A+ + +KR+QKE+ +AGV EVT+R YK
Sbjct: 262 PAGLAAAAVYIAAITAGEKRTQKEVAHVAGVTEVTVRNRYK 302
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 56/110 (50%), Gaps = 6/110 (5%)
Query: 195 LETSVD--LITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIY 252
+++SVD L + + R L+LP V++ A I R AVE +V GRS SV AAA+Y
Sbjct: 118 IQSSVDRNLAQALNELERIAELLNLPTHVREEAARIYRMAVEKGLVRGRSIESVIAAAVY 177
Query: 253 MASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPH----ASKLFPQDFV 298
+A + + RS EI + I + Y+L+ + + P DF+
Sbjct: 178 VACREARVPRSLDEITKYTRIPRKEIARCYRLLLRELGIKVTAVDPIDFI 227
>gi|448381827|ref|ZP_21561803.1| transcription initiation factor IIB [Haloterrigena thermotolerans
DSM 11522]
gi|445662908|gb|ELZ15671.1| transcription initiation factor IIB [Haloterrigena thermotolerans
DSM 11522]
Length = 341
Score = 152 bits (385), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 98/283 (34%), Positives = 157/283 (55%), Gaps = 17/283 (6%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTF-SNEKSGVDPSRVGGPENPLLNGSDLS 74
L+ D + +C++CGLVV + ID G EWR F + EK + SRVG P +++ LS
Sbjct: 54 LVSDDGRAETVCTDCGLVVEEDEIDRGPEWRAFDAAEKD--EKSRVGAPTTNMMHDQGLS 111
Query: 75 TMIGPGRGDASFDGFGMSKYQNR------------RTMNSSDRALLNAIREINSMADRIN 122
T IG DA G +S Q RT NS +R L A+ EI+ MA +
Sbjct: 112 TNIGWQDKDAY--GRSLSSRQREKMQRLRTWNERFRTRNSKERNLKQALGEIDRMASALG 169
Query: 123 LTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKK 182
L T+ + ++ ++++ + L GRS + +A+A LY A RQ G PR+ EI AVS++ K
Sbjct: 170 LPDTVRETSSVIYRRALEEDLLPGRSIEGVATASLYAAARQAGTPRSLDEIAAVSRVEKA 229
Query: 183 EIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRS 242
EI R ++ +++ L V ++ RF S+L L + ++ A + A E + G+S
Sbjct: 230 EIARTYRYVVRELGLEVQPADPESYVPRFASDLDLADETERRARDLLSTAKERGVHSGKS 289
Query: 243 PISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLM 285
P+ +AAAA+Y A+ +++K +Q ++ D+A ++EVTIR YK +
Sbjct: 290 PVGLAAAAVYAAALLTNEKVTQNDVSDVASISEVTIRNRYKEL 332
>gi|448420035|ref|ZP_21580845.1| transcription initiation factor TFB [Halosarcina pallida JCM 14848]
gi|445674203|gb|ELZ26748.1| transcription initiation factor TFB [Halosarcina pallida JCM 14848]
Length = 330
Score = 152 bits (385), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 99/286 (34%), Positives = 156/286 (54%), Gaps = 13/286 (4%)
Query: 8 CYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTF-SNEKSGVDPSRVGGPENP 66
C E L+ D G+ +C ECGLVV + +D G EWR F S+E+ SRVG P
Sbjct: 35 CPECGSTNLVNDSEHGETVCEECGLVVEEDAVDRGPEWRAFDSSERDS--KSRVGAPTTN 92
Query: 67 LLNGSDLSTMIGPGRGDA---SFDGFGMSKYQNRRTMN-------SSDRALLNAIREINS 116
+++ LST IG DA S K Q RT N S +R L A+ EI+
Sbjct: 93 MMHDKGLSTNIGWQDKDAYGNSLSSNQRQKMQRLRTWNERFRTRDSKERNLKQALGEIDR 152
Query: 117 MADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAV 176
MA + L + + A+ ++++ D L GRS + +A++ LY A R G PR+ EI V
Sbjct: 153 MASALGLPDNVRETASVIYRRALDDDLLPGRSIEGVATSALYAAARMAGTPRSLDEITNV 212
Query: 177 SKISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELD 236
S++ K EI R ++ +++ L+ ++ ++ RF S+L L + ++ A + + A E
Sbjct: 213 SRVGKDEISRTYRYVVRELKLEIEPADPEQYVPRFASDLDLSDESERHARQLLKTAKEQG 272
Query: 237 IVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSY 282
I G+SP+ +AAAAIY AS +++K +Q ++ ++A ++EVTIR Y
Sbjct: 273 IHSGKSPVGLAAAAIYAASLLANEKVTQSQVSEVANISEVTIRNRY 318
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 50/78 (64%)
Query: 208 MSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEI 267
+ R S L LP+ V++ A+ I R+A++ D++PGRS VA +A+Y A++ + RS EI
Sbjct: 150 IDRMASALGLPDNVRETASVIYRRALDDDLLPGRSIEGVATSALYAAARMAGTPRSLDEI 209
Query: 268 GDIAGVAEVTIRQSYKLM 285
+++ V + I ++Y+ +
Sbjct: 210 TNVSRVGKDEISRTYRYV 227
>gi|448306111|ref|ZP_21496021.1| Transcription factor TFIIB cyclin-related protein [Natronorubrum
bangense JCM 10635]
gi|445598749|gb|ELY52801.1| Transcription factor TFIIB cyclin-related protein [Natronorubrum
bangense JCM 10635]
Length = 325
Score = 152 bits (385), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 97/292 (33%), Positives = 161/292 (55%), Gaps = 17/292 (5%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTF-SNEKSGVDPSRVGGPENPLLNGSDLS 74
LI D + +C++CGLVV + +D G EWR F ++EK + SRVG P +++ LS
Sbjct: 37 LITDEEHAETVCTDCGLVVEEDEVDRGPEWRAFDASEKD--EKSRVGAPTTNMMHDQGLS 94
Query: 75 TMIGPGRGDASFDGFGMSKYQNR------------RTMNSSDRALLNAIREINSMADRIN 122
T IG DA G +S Q + RT +S +R L A+ EI+ MA +
Sbjct: 95 TNIGWQNKDAY--GRALSSRQRQKMQRLRTWNERFRTRDSKERNLKQALGEIDRMASALG 152
Query: 123 LTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKK 182
L + + + A+ ++++ + L GRS + +A+A LY A RQ G PR+ EI AVS++ K
Sbjct: 153 LPENVRETASVIYRRALEEDLLPGRSIEGVATASLYAAARQAGTPRSLDEISAVSRVEKM 212
Query: 183 EIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRS 242
E+ R ++ I++ L V ++ RF S+L L + ++ A + A + + G+S
Sbjct: 213 ELTRTYRYIIRELGLEVKPADPEHYVPRFISDLDLSDETERMARELLESARQEGVHSGKS 272
Query: 243 PISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKLFP 294
P+ +AAAA+Y A+ +++K +Q ++ D+A ++EVTIR YK + + P
Sbjct: 273 PVGLAAAAVYAAALLTNEKVTQNDVSDVASISEVTIRNRYKELLEASDTATP 324
>gi|448561557|ref|ZP_21634841.1| transcription initiation factor TFB [Haloferax prahovense DSM
18310]
gi|445720739|gb|ELZ72411.1| transcription initiation factor TFB [Haloferax prahovense DSM
18310]
Length = 318
Score = 152 bits (385), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 98/286 (34%), Positives = 154/286 (53%), Gaps = 13/286 (4%)
Query: 8 CYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTF-SNEKSGVDPSRVGGPENP 66
C E L+ D G+ +C +CGLVV + ID G EWR F S+EK SRVG P
Sbjct: 22 CPECGSESLVADSEHGETVCEDCGLVVEENEIDHGPEWRAFNSSEKD--QKSRVGAPTTN 79
Query: 67 LLNGSDLSTMIGPGRGDA---SFDGFGMSKYQNRRTMN-------SSDRALLNAIREINS 116
+++ LST IG DA S K Q RT N S +R L A+ EI+
Sbjct: 80 MMHDKGLSTNIGWQNKDAYGRSLSSRQREKMQRLRTWNERFRTRDSKERNLKQALGEIDR 139
Query: 117 MADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAV 176
MA + L + + A+ ++++ D L GRS + +A++ LY A R PR+ EI +V
Sbjct: 140 MASALGLPDNVRETASVIYRRALDDDLLPGRSIEGVATSALYAAARMADTPRSLDEITSV 199
Query: 177 SKISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELD 236
S++ K EI R ++ +++ L+ + ++ RF S L L + ++ A + + A E
Sbjct: 200 SRVEKDEIARTYRYVVRELKLEIKPADPEQYVPRFASELGLSDESERRARQLLKNAKEQG 259
Query: 237 IVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSY 282
+ G+SP+ +AAAA+Y AS +++K +Q E+ ++A ++EVTIR Y
Sbjct: 260 VHSGKSPVGLAAAAVYAASLLTNEKVTQNEVSEVANISEVTIRNRY 305
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 49/78 (62%)
Query: 208 MSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEI 267
+ R S L LP+ V++ A+ I R+A++ D++PGRS VA +A+Y A++ + RS EI
Sbjct: 137 IDRMASALGLPDNVRETASVIYRRALDDDLLPGRSIEGVATSALYAAARMADTPRSLDEI 196
Query: 268 GDIAGVAEVTIRQSYKLM 285
++ V + I ++Y+ +
Sbjct: 197 TSVSRVEKDEIARTYRYV 214
>gi|76801753|ref|YP_326761.1| transcription initiation factor TFB 2 [Natronomonas pharaonis DSM
2160]
gi|76557618|emb|CAI49201.1| transcription initiation factor TFB [Natronomonas pharaonis DSM
2160]
Length = 322
Score = 152 bits (385), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 98/281 (34%), Positives = 153/281 (54%), Gaps = 13/281 (4%)
Query: 13 DAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTF-SNEKSGVDPSRVGGPENPLLNGS 71
D L D G+ +C++CGLVV + ID G EWR F S EK + SRVG P +++
Sbjct: 31 DGRLQADTEHGETVCADCGLVVEEDEIDRGPEWRAFDSAEKD--EKSRVGAPTTKMMHDE 88
Query: 72 DLSTMIGPGRGDA---SFDGFGMSKYQNRRTMN-------SSDRALLNAIREINSMADRI 121
LST IG DA S K Q RT N S +R L A+ EI MA +
Sbjct: 89 GLSTNIGWQDKDAYGNSLSSRQRQKMQRLRTWNERFRTRDSKERNLKQALGEIERMASAL 148
Query: 122 NLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISK 181
L + + + A+ ++++ D L GRS + +A+A LY A +Q PR+ E+ VS++ K
Sbjct: 149 GLPENVRETASVIYRRALDEDLLPGRSIEGVATASLYAAAKQARTPRSLDEVAKVSRVEK 208
Query: 182 KEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGR 241
EI R ++ +++ L + ++ RF S++ L + ++ A + A E +V G+
Sbjct: 209 SEIARTYRYVVRELGLEIQPADPKSYVPRFASDIELSDEAERRARQLLDNAQEAGVVSGK 268
Query: 242 SPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSY 282
SP+ +AAAA+Y AS ++K +QKE+ ++A ++EVTIR Y
Sbjct: 269 SPVGLAAAAVYAASLLCNEKVTQKEVSEVADISEVTIRNRY 309
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 48/78 (61%)
Query: 208 MSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEI 267
+ R S L LP V++ A+ I R+A++ D++PGRS VA A++Y A++ + RS E+
Sbjct: 141 IERMASALGLPENVRETASVIYRRALDEDLLPGRSIEGVATASLYAAAKQARTPRSLDEV 200
Query: 268 GDIAGVAEVTIRQSYKLM 285
++ V + I ++Y+ +
Sbjct: 201 AKVSRVEKSEIARTYRYV 218
>gi|313126285|ref|YP_004036555.1| transcription initiation factor iib (tfiib) [Halogeometricum
borinquense DSM 11551]
gi|448286126|ref|ZP_21477361.1| transcription initiation factor iib (tfiib) [Halogeometricum
borinquense DSM 11551]
gi|312292650|gb|ADQ67110.1| Transcription initiation factor IIB (TFIIB) [Halogeometricum
borinquense DSM 11551]
gi|445575177|gb|ELY29656.1| transcription initiation factor iib (tfiib) [Halogeometricum
borinquense DSM 11551]
Length = 330
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 95/282 (33%), Positives = 154/282 (54%), Gaps = 15/282 (5%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLST 75
LI D G+ +C +CGLVV +D G EWR F N SRVG P +++ LST
Sbjct: 42 LITDEARGETVCGDCGLVVETDAVDRGPEWRAF-NSSERDSKSRVGAPTTRMMHDKGLST 100
Query: 76 MIGPGRGDASFDGFGMSKYQNR------------RTMNSSDRALLNAIREINSMADRINL 123
IG DA G +S Q RT NS +R L A+ EI+ MA + L
Sbjct: 101 NIGWQNKDAY--GKALSARQREQMQRLRTWNERFRTRNSKERNLKQALGEIDRMASALGL 158
Query: 124 TKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKE 183
+ + + A+ ++++ D L GRS + +A++ LY A RQ G PR+ E+ VS++ K E
Sbjct: 159 PENVRETASVIYRRALDDDLLPGRSIEGVATSALYAAARQAGTPRSLDELETVSRVDKME 218
Query: 184 IGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSP 243
+ R ++ +++ L+ ++ ++ RF S L L + ++ A + R A + I G+SP
Sbjct: 219 LTRTYRYVVRELKLEIEPADPEQYVPRFASELDLSDEAERQARDLLRNAKKAGIHSGKSP 278
Query: 244 ISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLM 285
+ +AAAA+Y A+ +++K +Q E+ ++A ++EVTIR YK +
Sbjct: 279 VGLAAAAVYAAALLTNEKVTQSEVSEVASISEVTIRNRYKEL 320
>gi|448575069|ref|ZP_21641592.1| transcription initiation factor TFB [Haloferax larsenii JCM 13917]
gi|445732748|gb|ELZ84330.1| transcription initiation factor TFB [Haloferax larsenii JCM 13917]
Length = 315
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 97/286 (33%), Positives = 155/286 (54%), Gaps = 13/286 (4%)
Query: 8 CYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTF-SNEKSGVDPSRVGGPENP 66
C E L+ D G+ +C +CGLVV + ID G EWR F S EK+ SRVG P
Sbjct: 19 CPECESESLVSDTEHGETVCDDCGLVVEENEIDHGPEWRAFNSTEKN--QKSRVGAPTTN 76
Query: 67 LLNGSDLSTMIGPGRGDA---SFDGFGMSKYQNRRTMN-------SSDRALLNAIREINS 116
+++ LST IG DA S K Q RT N S +R L A+ EI+
Sbjct: 77 MMHDKGLSTNIGWQNKDAYGRSLSSRQREKMQRLRTWNERFRTRDSKERNLKQALGEIDR 136
Query: 117 MADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAV 176
MA + L + + + A+ ++++ + L GRS + +A++ LY A R PR+ EI +V
Sbjct: 137 MASALGLPENVRETASVIYRRALNDDLLPGRSIEGVATSSLYAAARMADTPRSLDEITSV 196
Query: 177 SKISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELD 236
S++ K EI R ++ +++ L+ + ++ RF S L L + ++ A + + A E
Sbjct: 197 SRVEKDEIARTYRYVVRELKLEIKPADPEQYVPRFASELGLSDEPERRARQLLKNAKEQS 256
Query: 237 IVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSY 282
+ G+SP+ +AAAA+Y AS +++K +Q E+ ++A ++EVTIR Y
Sbjct: 257 VHSGKSPVGLAAAAVYAASLLTNEKVTQNEVSEVANISEVTIRNRY 302
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 47/78 (60%)
Query: 208 MSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEI 267
+ R S L LP V++ A+ I R+A+ D++PGRS VA +++Y A++ + RS EI
Sbjct: 134 IDRMASALGLPENVRETASVIYRRALNDDLLPGRSIEGVATSSLYAAARMADTPRSLDEI 193
Query: 268 GDIAGVAEVTIRQSYKLM 285
++ V + I ++Y+ +
Sbjct: 194 TSVSRVEKDEIARTYRYV 211
>gi|448590590|ref|ZP_21650355.1| transcription initiation factor TFB [Haloferax elongans ATCC
BAA-1513]
gi|445734086|gb|ELZ85645.1| transcription initiation factor TFB [Haloferax elongans ATCC
BAA-1513]
Length = 315
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 97/286 (33%), Positives = 156/286 (54%), Gaps = 13/286 (4%)
Query: 8 CYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTF-SNEKSGVDPSRVGGPENP 66
C E L+ D G+ +C +CGLVV + ID G EWR F S+EK+ SRVG P
Sbjct: 19 CPECESDALVSDTEHGETVCDDCGLVVEENEIDHGPEWRAFNSSEKN--QKSRVGAPTTN 76
Query: 67 LLNGSDLSTMIGPGRGDA---SFDGFGMSKYQNRRTMN-------SSDRALLNAIREINS 116
+++ LST IG DA S K Q RT N S +R L A+ EI+
Sbjct: 77 MMHDKGLSTNIGWQNKDAYGRSLSSRQREKMQRLRTWNERFRTRDSKERNLKQALGEIDR 136
Query: 117 MADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAV 176
MA + L + + + A+ ++++ + L GRS + +A++ LY A R PR+ EI +V
Sbjct: 137 MASALGLPENVRETASVIYRRALNDDLLPGRSIEGVATSALYAAARMADTPRSLDEITSV 196
Query: 177 SKISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELD 236
S++ K EI R ++ +++ L+ + ++ RF S L L + ++ A + + A E
Sbjct: 197 SRVEKDEIARTYRYVVRELKLEIKPADPEQYVPRFASELGLSDEPERRARQLLKNAKEQS 256
Query: 237 IVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSY 282
+ G+SP+ +AAAA+Y AS +++K +Q E+ ++A ++EVTIR Y
Sbjct: 257 VHSGKSPVGLAAAAVYAASLLTNEKVTQNEVSEVANISEVTIRNRY 302
Score = 50.4 bits (119), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 47/78 (60%)
Query: 208 MSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEI 267
+ R S L LP V++ A+ I R+A+ D++PGRS VA +A+Y A++ + RS EI
Sbjct: 134 IDRMASALGLPENVRETASVIYRRALNDDLLPGRSIEGVATSALYAAARMADTPRSLDEI 193
Query: 268 GDIAGVAEVTIRQSYKLM 285
++ V + I ++Y+ +
Sbjct: 194 TSVSRVEKDEIARTYRYV 211
>gi|448401933|ref|ZP_21571844.1| Transcription factor TFIIB cyclin-related protein [Haloterrigena
limicola JCM 13563]
gi|445665991|gb|ELZ18662.1| Transcription factor TFIIB cyclin-related protein [Haloterrigena
limicola JCM 13563]
Length = 325
Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 97/292 (33%), Positives = 160/292 (54%), Gaps = 17/292 (5%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTF-SNEKSGVDPSRVGGPENPLLNGSDLS 74
L+ D + +C+ECGLVV + ID G EWR F + EK + SRVG P +++ LS
Sbjct: 37 LVSDDEHAETVCTECGLVVEEDEIDRGPEWRAFDAAEKD--EKSRVGAPTTNMMHDQGLS 94
Query: 75 TMIGPGRGDASFDGFGMSKYQNR------------RTMNSSDRALLNAIREINSMADRIN 122
T IG DA G +S Q + RT +S +R L A+ EI+ MA +
Sbjct: 95 TNIGWQDKDAY--GRALSSRQRQKMQRLRTWNERFRTRDSKERNLKQALGEIDRMASALG 152
Query: 123 LTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKK 182
L + + + A+ ++++ + L GRS + +A+A LY A RQ G PR+ EI AVS++ K
Sbjct: 153 LPENVRETASVIYRRALEEDLLPGRSIEGVATASLYAAARQAGTPRSLDEISAVSRVEKM 212
Query: 183 EIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRS 242
E+ R ++ I++ L V ++ RF S+L L + ++ A + A + + G+S
Sbjct: 213 ELTRTYRYIIRELGLEVKPADPEHYVPRFVSDLDLSDETERMARELLESARQEGVHSGKS 272
Query: 243 PISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKLFP 294
P+ +AAA++Y A+ +++K +Q E+ ++A ++EVTIR YK + + P
Sbjct: 273 PVGLAAASVYAAALLTNEKVTQNEVSEVASISEVTIRNRYKELLEASDTAAP 324
>gi|448349399|ref|ZP_21538241.1| transcription factor TFIIB cyclin-related protein [Natrialba
taiwanensis DSM 12281]
gi|445640642|gb|ELY93729.1| transcription factor TFIIB cyclin-related protein [Natrialba
taiwanensis DSM 12281]
Length = 318
Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 96/286 (33%), Positives = 156/286 (54%), Gaps = 12/286 (4%)
Query: 8 CYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPL 67
C E + ++ G++IC ECGLV+ + ++D G EWR F N K + SRVG P
Sbjct: 26 CSECGSSNVVRHSDQGERICEECGLVIEEAMVDSGPEWRAF-NHKERQEKSRVGAPTTQT 84
Query: 68 LNGSDLSTMIGPGRGDASFDGFG---------MSKYQNR-RTMNSSDRALLNAIREINSM 117
++ L+T I DA + K+Q+R RT ++ +R L A+ EI+ M
Sbjct: 85 MHDKGLTTQIDWKDKDAYGRSISSKKRSQMNRLRKWQSRIRTRDAGERNLQFALSEIDRM 144
Query: 118 ADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVS 177
A + + +++ + + ++++ ++GRS + +A+A LY CRQE +PR+ +EI VS
Sbjct: 145 ASALGVPRSVREVTSMIYRRALQEDLIRGRSIEGVATAALYAGCRQEDIPRSLEEITEVS 204
Query: 178 KISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDI 237
+I + E+ R ++ I L + I ++ RF S L LP V+ A I + + +
Sbjct: 205 RIERIEVSRTYRYISNELGLELLPIDPKQYVPRFSSKLDLPQEVEAKANEIIEETAD-PL 263
Query: 238 VPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
+ GR P AAAAIY A+ ++KR+QKE+ D+A V EVTIR Y+
Sbjct: 264 LSGRGPSGFAAAAIYAAALLCNEKRTQKEVADVAQVTEVTIRNRYQ 309
>gi|322369913|ref|ZP_08044475.1| Transcription factor TFIIB cyclin-related protein [Haladaptatus
paucihalophilus DX253]
gi|320550249|gb|EFW91901.1| Transcription factor TFIIB cyclin-related protein [Haladaptatus
paucihalophilus DX253]
Length = 320
Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 95/277 (34%), Positives = 152/277 (54%), Gaps = 11/277 (3%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLST 75
LI D G+ IC +CGLVV +D G EWR F + K + SRVG P ++ LST
Sbjct: 32 LIADSGHGETICEDCGLVVEVDNVDRGPEWRAF-DAKEKNEKSRVGAPTTNTMHDKGLST 90
Query: 76 MIGPGRGDASFDGFG---------MSKYQNR-RTMNSSDRALLNAIREINSMADRINLTK 125
I DA + G + K+ R RT +S +R L A+ EI+ MA + L
Sbjct: 91 NIDWRNKDAYGNSLGSRQREKMQRLRKWNERFRTRDSKERNLKQALGEIDRMASALGLPD 150
Query: 126 TIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIG 185
+ + A+ ++++ + L GRS + ++++C+Y A RQ GVPR+ EI VS++ K E+
Sbjct: 151 NVREMASVIYRRALNEDLLPGRSIEGVSTSCVYAAARQAGVPRSLDEITEVSRVDKSEVA 210
Query: 186 RCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPIS 245
R ++ +++ L V ++ RF S L L + + A + R A E + G+SP+
Sbjct: 211 RTYRYVVRELSLEVKPADPESYVPRFASGLELSDEAEHRARELLRNAKEQGVHSGKSPVG 270
Query: 246 VAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSY 282
+AAAA+Y A+ +++K +Q E+ D+A ++EVTIR Y
Sbjct: 271 LAAAAVYAAALLTNEKTTQAEVSDVADISEVTIRNRY 307
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 55/96 (57%), Gaps = 1/96 (1%)
Query: 208 MSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEI 267
+ R S L LP+ V++ A+ I R+A+ D++PGRS V+ + +Y A++ + RS EI
Sbjct: 139 IDRMASALGLPDNVREMASVIYRRALNEDLLPGRSIEGVSTSCVYAAARQAGVPRSLDEI 198
Query: 268 GDIAGVAEVTIRQSYKLMYPHAS-KLFPQDFVFHTP 302
+++ V + + ++Y+ + S ++ P D + P
Sbjct: 199 TEVSRVDKSEVARTYRYVVRELSLEVKPADPESYVP 234
>gi|161528848|ref|YP_001582674.1| transcription factor TFIIB cyclin-related protein [Nitrosopumilus
maritimus SCM1]
gi|160340149|gb|ABX13236.1| Transcription factor TFIIB cyclin-related [Nitrosopumilus maritimus
SCM1]
Length = 306
Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 93/293 (31%), Positives = 159/293 (54%), Gaps = 13/293 (4%)
Query: 1 MNINKVCCYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRV 60
M+ ++ C L+ D + + CS CG+VV ++ D E R F+N S D S
Sbjct: 11 MSSQEIKCPRCGKNALVTDVESSEIFCSNCGIVVEEKTNDRRPE-RAFAN--STTDKSHT 67
Query: 61 GGPENPLLNGSDLSTMIGPGRGDASFDGFGMS---------KYQNR-RTMNSSDRALLNA 110
G + + LST+I P D++ S K+ NR R + DR L A
Sbjct: 68 GDKTSLTRHDRGLSTVINPFDKDSAGSPLSASMKSSMTRLRKWDNRSRIKTNDDRNLQQA 127
Query: 111 IREINSMADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTF 170
+ E++ M ++++L+ I ++A+ ++++ + K +KGRS ++ +ACLY ACR+ PRT
Sbjct: 128 LLELSKMKEKLSLSDAIAEKASYIYRKALEKKLVKGRSIASLVAACLYAACRESEAPRTL 187
Query: 171 KEICAVSKISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIAR 230
+E+ A I +KEI ++LI K L+ + +I + +++ SN L ++ A I +
Sbjct: 188 REVAASIGIKRKEISATYRLIFKELDLKMPVIDSVSCIAKIASNAELSEKTKRYAIKILK 247
Query: 231 KAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
KA + ++ G+ P+ +AA+A+Y+AS + R+QKEI D AG+ EVT+R K
Sbjct: 248 KAEKQNMSAGKHPMGLAASALYLASIDLEEFRTQKEIADAAGITEVTVRNRCK 300
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 47/87 (54%)
Query: 208 MSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEI 267
+S+ LSL + + + A++I RKA+E +V GRS S+ AA +Y A + S R+ +E+
Sbjct: 131 LSKMKEKLSLSDAIAEKASYIYRKALEKKLVKGRSIASLVAACLYAACRESEAPRTLREV 190
Query: 268 GDIAGVAEVTIRQSYKLMYPHASKLFP 294
G+ I +Y+L++ P
Sbjct: 191 AASIGIKRKEISATYRLIFKELDLKMP 217
>gi|448562505|ref|ZP_21635463.1| transcription initiation factor TFB [Haloferax prahovense DSM
18310]
gi|445718823|gb|ELZ70507.1| transcription initiation factor TFB [Haloferax prahovense DSM
18310]
Length = 332
Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 101/302 (33%), Positives = 161/302 (53%), Gaps = 18/302 (5%)
Query: 5 KVC--CYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGG 62
+VC C H L+ D G+ IC ECGLVV + V+D G EWR F + + SRVG
Sbjct: 35 QVCPECSGH----LVTDEEHGETICEECGLVVEETVVDRGPEWRAFDSAERD-SKSRVGA 89
Query: 63 PENPLLNGSDLSTMIGPGRGDA---SFDGFGMSKYQNRRTMN-------SSDRALLNAIR 112
P +++ LST IG DA S + Q RT N S +R L A+
Sbjct: 90 PTTKMMHDKGLSTNIGWQNKDAYGKSLSPRQREQMQRLRTWNERFRTRDSKERNLKQALG 149
Query: 113 EINSMADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKE 172
EI+ MA + L + + + A+ ++++ + L GRS + +A+A LY + R G PR+ E
Sbjct: 150 EIDRMASALGLPENVRETASVIYRRALNDDLLPGRSIEGVATAALYASARMAGTPRSLDE 209
Query: 173 ICAVSKISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKA 232
+ VS++ K E+ R ++ +++ L+ + ++ RF S L L + ++ A + R A
Sbjct: 210 LEKVSRVDKMELTRTYRYVVRELKLEIKPADPEQYVPRFASELGLSDEAERQARQLLRDA 269
Query: 233 VELDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK-LMYPHASK 291
E I G+SP+ +AAAA+Y A+ +++K +Q E+ +A ++EVTIR YK L+
Sbjct: 270 KETGIHSGKSPVGLAAAAVYAAALLTNEKVTQSEVSTVADISEVTIRNRYKELLEVQDGT 329
Query: 292 LF 293
LF
Sbjct: 330 LF 331
>gi|448613121|ref|ZP_21663001.1| transcription initiation factor TFB [Haloferax mucosum ATCC
BAA-1512]
gi|445740018|gb|ELZ91524.1| transcription initiation factor TFB [Haloferax mucosum ATCC
BAA-1512]
Length = 345
Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 97/288 (33%), Positives = 155/288 (53%), Gaps = 13/288 (4%)
Query: 6 VCCYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTF-SNEKSGVDPSRVGGPE 64
+ C E L+ D G+ +C ECGLVV + ID G EWR F S+EK SRVG P
Sbjct: 47 LSCPECGSEALVSDSEHGETVCDECGLVVEENEIDRGPEWRAFNSSEKD--QKSRVGAPT 104
Query: 65 NPLLNGSDLSTMIGPGRGDA---SFDGFGMSKYQNRRTMN-------SSDRALLNAIREI 114
+++ LST IG DA S K Q RT N S +R L A+ EI
Sbjct: 105 TNMMHDKGLSTNIGWQNKDAYGRSLSSRQREKMQRLRTWNERFRTRDSKERNLKQALGEI 164
Query: 115 NSMADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEIC 174
+ MA + L + + + + ++++ + L GRS + +A++ LY A R PR+ EI
Sbjct: 165 DRMASALGLPENVRETTSVIYRRALNDDLLPGRSIEGVATSSLYAAARMADTPRSLDEIT 224
Query: 175 AVSKISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVE 234
+VS++ K EI R ++ +++ L+ + ++ RF S L + + ++ A + + A E
Sbjct: 225 SVSRVEKDEIARTYRYVVRELKLEIKPADPEQYVPRFASELGISDESERRARQLLKNAKE 284
Query: 235 LDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSY 282
+ G+SP+ +AAAA+Y AS +++K +Q E+ D+A ++EVTIR Y
Sbjct: 285 QGVHSGKSPVGLAAAAVYAASLLTNEKVTQNEVSDVANISEVTIRNRY 332
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 46/78 (58%)
Query: 208 MSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEI 267
+ R S L LP V++ + I R+A+ D++PGRS VA +++Y A++ + RS EI
Sbjct: 164 IDRMASALGLPENVRETTSVIYRRALNDDLLPGRSIEGVATSSLYAAARMADTPRSLDEI 223
Query: 268 GDIAGVAEVTIRQSYKLM 285
++ V + I ++Y+ +
Sbjct: 224 TSVSRVEKDEIARTYRYV 241
>gi|448529404|ref|ZP_21620542.1| transcription factor TFIIB cyclin-related protein [Halorubrum
hochstenium ATCC 700873]
gi|445709166|gb|ELZ60999.1| transcription factor TFIIB cyclin-related protein [Halorubrum
hochstenium ATCC 700873]
Length = 324
Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 97/277 (35%), Positives = 151/277 (54%), Gaps = 11/277 (3%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLST 75
L D G+ +C +CGLVV + ID G EWR F + K + SRVG P +++ LST
Sbjct: 36 LATDTEHGETVCVDCGLVVEEDEIDRGPEWRAF-DSKEKDNKSRVGAPTTNMMHDKGLST 94
Query: 76 MIGPGRGDA---SFDGFGMSKYQNRRTMN-------SSDRALLNAIREINSMADRINLTK 125
IG DA S K Q RT N S +R L A+ EI+ MA + L
Sbjct: 95 NIGWQDKDAYGKSLSSRQREKMQRLRTWNERFRTRDSKERNLKQALGEIDRMASALGLPD 154
Query: 126 TIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIG 185
+ + A+ ++++ D L GRS + ++++ LY A RQ G PR+ EI AVS++ K EI
Sbjct: 155 NVRETASVIYRRALDEDLLPGRSIEGVSTSSLYAAARQAGTPRSLDEIAAVSRVEKDEIA 214
Query: 186 RCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPIS 245
R ++ +++ L+ + ++ RF S+L L + ++ A + A E I G+SP+
Sbjct: 215 RTYRYVVRELKLEIQPADPESYVPRFASDLGLSDEAERRARSLLDTAKEQGIHSGKSPVG 274
Query: 246 VAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSY 282
+AAAA+Y AS ++K +Q E+ ++A ++EVTIR Y
Sbjct: 275 LAAAAVYAASLLVNEKVTQSEVSEVANISEVTIRNRY 311
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 49/78 (62%)
Query: 208 MSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEI 267
+ R S L LP+ V++ A+ I R+A++ D++PGRS V+ +++Y A++ + RS EI
Sbjct: 143 IDRMASALGLPDNVRETASVIYRRALDEDLLPGRSIEGVSTSSLYAAARQAGTPRSLDEI 202
Query: 268 GDIAGVAEVTIRQSYKLM 285
++ V + I ++Y+ +
Sbjct: 203 AAVSRVEKDEIARTYRYV 220
>gi|300711217|ref|YP_003737031.1| transcription factor TFIIB cyclin-like protein [Halalkalicoccus
jeotgali B3]
gi|299124900|gb|ADJ15239.1| Transcription factor TFIIB cyclin-related protein [Halalkalicoccus
jeotgali B3]
Length = 335
Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 95/280 (33%), Positives = 152/280 (54%), Gaps = 11/280 (3%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLST 75
L D G+ +CS CGLVV + ID G EWR F + + SRVG P +++ LST
Sbjct: 38 LETDTEHGETVCSACGLVVEENEIDRGPEWRAFDSAERD-QKSRVGAPTTTMMHDKGLST 96
Query: 76 MIGPGRGDASFDGFGMSKYQNR----------RTMNSSDRALLNAIREINSMADRINLTK 125
IG DA + + Q RT NS +R L A+ EI+ MA + L K
Sbjct: 97 NIGWQNKDAYGNTLSNRQRQKMQRLRTWNERFRTRNSKERNLKQALGEIDRMASALGLPK 156
Query: 126 TIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIG 185
+ + A+ ++++ + L GRS + +A+A LY A RQ G PR+ EI VS+I + E+
Sbjct: 157 NVRETASVIYRRALEEDLLPGRSIEGVATASLYAAARQAGTPRSLDEIVQVSRIDRMELT 216
Query: 186 RCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPIS 245
R ++ +++ L+ V ++ RF S+L L + + A + A + I G+SP+
Sbjct: 217 RTYRYVIRELDLEVQPADPESYVPRFASDLELSDEAEHRARELLSNAKQSGIHSGKSPVG 276
Query: 246 VAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLM 285
+AAAA+Y A+ +++K +Q E+ ++A ++EVTIR YK +
Sbjct: 277 LAAAAVYAAALLTNEKVTQAEVSEVANISEVTIRNRYKEL 316
>gi|335441148|ref|ZP_08561869.1| Transcription factor TFIIB cyclin-related protein [Halorhabdus
tiamatea SARL4B]
gi|334888319|gb|EGM26618.1| Transcription factor TFIIB cyclin-related protein [Halorhabdus
tiamatea SARL4B]
Length = 325
Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 96/277 (34%), Positives = 153/277 (55%), Gaps = 11/277 (3%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLST 75
LI D G+ +C+ECGLVV + ID G EWR F + K SRVG P +++ LST
Sbjct: 37 LISDTERGETVCTECGLVVEEDEIDPGPEWRAF-DAKEKDQKSRVGAPTTNMMHDKGLST 95
Query: 76 MIGPGRGDASFDGFG---------MSKYQNR-RTMNSSDRALLNAIREINSMADRINLTK 125
I DA + G + K+ R RT +S +R L A+ EI+ MA + L +
Sbjct: 96 NIDWRDKDAYGNSLGSRQREKMQRLRKWNERFRTRDSKERNLKQALGEIDRMASALGLPE 155
Query: 126 TIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIG 185
+ + A+ ++++ D L GRS + +++A +Y A RQ GVPR+ E+ VS++ K EI
Sbjct: 156 NVRETASVIYRRALDEDLLPGRSIEGVSTASVYAAARQAGVPRSLDELTDVSRVEKDEIA 215
Query: 186 RCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPIS 245
R ++ +++ L V ++ RF S+L L ++ A + A E + G+SP+
Sbjct: 216 RTYRYVVRELGLEVRPADPESYVPRFTSDLELSEEAERRARELLANAKEEGVHSGKSPVG 275
Query: 246 VAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSY 282
+AAAAIY AS +++K +Q + ++A ++EVTIR Y
Sbjct: 276 LAAAAIYAASLLTNEKTTQAAVSEVADISEVTIRNRY 312
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 49/78 (62%)
Query: 208 MSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEI 267
+ R S L LP V++ A+ I R+A++ D++PGRS V+ A++Y A++ + RS E+
Sbjct: 144 IDRMASALGLPENVRETASVIYRRALDEDLLPGRSIEGVSTASVYAAARQAGVPRSLDEL 203
Query: 268 GDIAGVAEVTIRQSYKLM 285
D++ V + I ++Y+ +
Sbjct: 204 TDVSRVEKDEIARTYRYV 221
>gi|268326216|emb|CBH39804.1| transcription initiation factor IIB [uncultured archaeon]
Length = 302
Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 91/276 (32%), Positives = 151/276 (54%), Gaps = 8/276 (2%)
Query: 8 CYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPL 67
C E ++ D + + C++CG+V+ + ++D+G EWR++ E++ R G P +
Sbjct: 8 CLECGSKSIVTDPKHAELYCADCGMVITENLVDLGPEWRSYDAEQAS-KRVRTGPPMSYR 66
Query: 68 LNGSDLSTMIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADRINLTKTI 127
++ LST PG S G+ M+S++++L A+ EI+ MA +NL + +
Sbjct: 67 VHNKGLSTPT-PGSLTRSKRLRGLI------AMDSNEKSLSFALGEIDRMACALNLPRDL 119
Query: 128 VDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGRC 187
+ + L+++ +KGRS + +ASA LYI CRQ G+PRT KEI AVS++ K+I R
Sbjct: 120 RETTSLLYRKAAKRSLIKGRSIEELASAMLYITCRQYGIPRTLKEIAAVSRMPLKKIRRA 179
Query: 188 FKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVA 247
+ +L LE + ++ RFCS L L +++++ A I + E G +P A
Sbjct: 180 YIFLLHKLEIKLAPADPACYIPRFCSELGLRDVIRERAIEIVSEDKETIAAKGWTPTGTA 239
Query: 248 AAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
AAAIY+AS S + K++ +AG VTI+ YK
Sbjct: 240 AAAIYLASLLSGESVEVKDMAKVAGTTPVTIQNRYK 275
>gi|399578723|ref|ZP_10772468.1| transcription initiation factor IIB [Halogranum salarium B-1]
gi|399236182|gb|EJN57121.1| transcription initiation factor IIB [Halogranum salarium B-1]
Length = 319
Score = 152 bits (383), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 88/274 (32%), Positives = 156/274 (56%), Gaps = 11/274 (4%)
Query: 20 YRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLSTMIGP 79
+ G+ +C +CGLV+ ++ ID G EWR F N+ SRVG P ++ L+T I
Sbjct: 38 HSGGELVCDDCGLVLDEQNIDRGPEWRAF-NQNERDSKSRVGAPTTKTMHDKGLTTQIDW 96
Query: 80 GRGDASFDGFG---------MSKYQNR-RTMNSSDRALLNAIREINSMADRINLTKTIVD 129
DA + K+Q R RT ++ +R L A+ E++ MA + ++ +
Sbjct: 97 KNKDAYGRSLSSEKRSQMHRLRKWQERIRTKDAGERNLQFALSEMDRMASALGAPRSTRE 156
Query: 130 RANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGRCFK 189
A+ L+++ + ++GRS +A++++CLY ACR EG+PR+ E+ V+++ KEIGR ++
Sbjct: 157 VASVLYRRALNEDLIRGRSIEAVSTSCLYAACRMEGIPRSLDEVTEVARVPYKEIGRTYR 216
Query: 190 LILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAA 249
I + L+ + + +++ RF S L + V++ A I + E ++ G+SP AAA
Sbjct: 217 YIAQELKLEMQPVDPKEYVPRFASELGVSEEVKQKANEIIDVSAEQGLLSGKSPTGFAAA 276
Query: 250 AIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
A+Y AS ++K++Q+E+ +++ V EVTIR Y+
Sbjct: 277 ALYAASLLCNEKKTQREVAEVSQVTEVTIRNRYQ 310
>gi|335437678|ref|ZP_08560448.1| Transcription factor TFIIB cyclin-related protein [Halorhabdus
tiamatea SARL4B]
gi|334895047|gb|EGM33228.1| Transcription factor TFIIB cyclin-related protein [Halorhabdus
tiamatea SARL4B]
Length = 328
Score = 152 bits (383), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 103/286 (36%), Positives = 156/286 (54%), Gaps = 13/286 (4%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTF-SNEKSGVDPSRVGGPENPLLNGSDLS 74
L+ D G+ +CSECGLVV + ID G EWR F S EK SRVG P +++ LS
Sbjct: 38 LVTDSERGETVCSECGLVVEEDEIDPGPEWRAFDSAEKD--KKSRVGAPTTNMMHDKGLS 95
Query: 75 TMIGPGRGDA---SFDGFGMSKYQNRRTMN-------SSDRALLNAIREINSMADRINLT 124
T IG DA S K Q RT N S +R L A+ EI+ MA + L
Sbjct: 96 TNIGWQNKDAYGNSLSSRQREKMQRLRTWNERFRTRDSKERNLKQALGEIDRMASALGLP 155
Query: 125 KTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEI 184
+ + + A+ ++++ D L GRS + +A+A LY A RQ G PR+ EI VS+I + E+
Sbjct: 156 ENVRETASVIYRRALDEDLLPGRSIEGVATASLYAAARQAGNPRSLDEIERVSRIDRMEL 215
Query: 185 GRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPI 244
R ++ +++ L V ++ RF S+L L V + A + A + ++ G+SP+
Sbjct: 216 TRTYRYVVRELNLEVKPADPESYVPRFVSDLDLSEEVSRQARELIESARKEGVLSGKSPV 275
Query: 245 SVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHAS 290
+AAAAIY A+ S+++ +Q E+ ++A ++EVTIR YK + S
Sbjct: 276 GIAAAAIYAAALLSNERITQGEVSEVANISEVTIRNRYKELLEAKS 321
>gi|448624536|ref|ZP_21670484.1| transcription initiation factor TFB [Haloferax denitrificans ATCC
35960]
gi|445749741|gb|EMA01183.1| transcription initiation factor TFB [Haloferax denitrificans ATCC
35960]
Length = 331
Score = 152 bits (383), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 100/304 (32%), Positives = 160/304 (52%), Gaps = 21/304 (6%)
Query: 4 NKVC--CYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVG 61
+VC C H L+ D G+ IC ECGLVV D V+D G EWR F + + SRVG
Sbjct: 34 TQVCPECSGH----LVTDEEHGETICEECGLVVEDTVVDRGPEWRAFDSAERD-SKSRVG 88
Query: 62 GPENPLLNGSDLSTMIGPGRGDASFDGFGMSKYQNR------------RTMNSSDRALLN 109
P +++ LST IG DA G +S Q RT +S +R L
Sbjct: 89 APTTKMMHDKGLSTNIGWQNKDAY--GKSLSPRQREQMQRLRTWNERFRTRDSKERNLKQ 146
Query: 110 AIREINSMADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRT 169
A+ EI+ MA + L + + + A+ ++++ + L GRS + +A+A LY + R PR+
Sbjct: 147 ALGEIDRMASALGLPENVRETASVIYRRALNDDLLPGRSIEGVATAALYASARMASTPRS 206
Query: 170 FKEICAVSKISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIA 229
E+ VS++ K E+ R ++ I++ L+ + ++ RF S L L + ++ A +
Sbjct: 207 LDELEKVSRVDKMELTRTYRYIVRELKLEIKPADPEQYVPRFASELGLSDESERQARQLL 266
Query: 230 RKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHA 289
R A E + G+SP+ +AAAA+Y A+ +++K +Q E+ +A ++EVTIR YK +
Sbjct: 267 RDAKETGVHSGKSPVGLAAAAVYAAALLTNEKVTQSEVSTVADISEVTIRNRYKELLEVQ 326
Query: 290 SKLF 293
LF
Sbjct: 327 DGLF 330
>gi|222478746|ref|YP_002564983.1| transcription factor TFIIB cyclin-related [Halorubrum lacusprofundi
ATCC 49239]
gi|222451648|gb|ACM55913.1| Transcription factor TFIIB cyclin-related [Halorubrum lacusprofundi
ATCC 49239]
Length = 333
Score = 152 bits (383), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 96/275 (34%), Positives = 152/275 (55%), Gaps = 19/275 (6%)
Query: 23 GDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLSTMIGPGRG 82
G+ I E GL+V + ID G EWR F N SRVG P ++ L+T I
Sbjct: 54 GELIHEETGLIVEEEQIDPGPEWRAF-NHSERQSKSRVGAPTTKTMHDKGLTTTIDWKDK 112
Query: 83 DASFDGFGMS-------------KYQNR-RTMNSSDRALLNAIREINSMADRINLTKTIV 128
DA +G S K+Q R RT ++ +R L A+ EI+ MA + + +++
Sbjct: 113 DA----YGRSISSKKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDRMASALGVPRSVR 168
Query: 129 DRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGRCF 188
+ A+ ++++ + ++GRS + +++A LY ACR+EG+PR+ +EI VS++ +KEIGR +
Sbjct: 169 EVASVIYRRALNEDLIRGRSIEGVSTAALYAACRKEGIPRSLEEISDVSRVERKEIGRTY 228
Query: 189 KLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAA 248
+ I + L + + ++ RF S L L VQ A I E ++ G+SP AA
Sbjct: 229 RYISQELGLEMRPVDPKKYVPRFSSELELSEEVQSKANEIIETTAEKGLLSGKSPTGYAA 288
Query: 249 AAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
AAIY AS ++K++Q+E+ D+A V EVTIR Y+
Sbjct: 289 AAIYAASLLCNEKKTQREVADVAQVTEVTIRNRYQ 323
>gi|448604552|ref|ZP_21657719.1| transcription initiation factor TFB [Haloferax sulfurifontis ATCC
BAA-897]
gi|445743961|gb|ELZ95441.1| transcription initiation factor TFB [Haloferax sulfurifontis ATCC
BAA-897]
Length = 331
Score = 152 bits (383), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 100/304 (32%), Positives = 160/304 (52%), Gaps = 21/304 (6%)
Query: 4 NKVC--CYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVG 61
+VC C H L+ D G+ IC ECGLVV D V+D G EWR F + + SRVG
Sbjct: 34 TQVCPECSGH----LVTDEEHGETICEECGLVVEDTVVDRGPEWRAFDSAERD-SKSRVG 88
Query: 62 GPENPLLNGSDLSTMIGPGRGDASFDGFGMSKYQNR------------RTMNSSDRALLN 109
P +++ LST IG DA G +S Q RT +S +R L
Sbjct: 89 APTTKMMHDKGLSTNIGWQNKDAY--GKSLSPRQREQMQRLRTWNERFRTRDSKERNLKQ 146
Query: 110 AIREINSMADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRT 169
A+ EI+ MA + L + + + A+ ++++ + L GRS + +A+A LY + R PR+
Sbjct: 147 ALGEIDRMASALGLPENVRETASVIYRRALNDDLLPGRSIEGVATAALYASARMASTPRS 206
Query: 170 FKEICAVSKISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIA 229
E+ VS++ K E+ R ++ I++ L+ + ++ RF S L L + ++ A +
Sbjct: 207 LDELEKVSRVDKMELTRTYRYIVRELKLEIKPADPEQYVPRFASELGLSDESERQARQLL 266
Query: 230 RKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHA 289
R A E + G+SP+ +AAAA+Y A+ +++K +Q E+ +A ++EVTIR YK +
Sbjct: 267 RDAKETGVHSGKSPVGLAAAAVYAAALLTNEKVTQSEVSTVADISEVTIRNRYKELLEVQ 326
Query: 290 SKLF 293
LF
Sbjct: 327 DGLF 330
>gi|386874567|ref|ZP_10116805.1| putative transcription initiation factor IIB [Candidatus
Nitrosopumilus salaria BD31]
gi|386807600|gb|EIJ66981.1| putative transcription initiation factor IIB [Candidatus
Nitrosopumilus salaria BD31]
Length = 315
Score = 152 bits (383), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 87/278 (31%), Positives = 157/278 (56%), Gaps = 11/278 (3%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLST 75
++ D G++ C +CG V+ + + D G EWR+FS E G DP+R G P + ++ L+T
Sbjct: 24 MLTDNVTGERFCGKCGFVISETLQDSGPEWRSFSKE-GGTDPTRTGAPTSLTMHDRGLAT 82
Query: 76 MIGPGRGDASFDGFGMS---------KYQNRRTMN-SSDRALLNAIREINSMADRINLTK 125
+I P DAS S + +R +N SSDR L A+ E+ ++ D+++L+
Sbjct: 83 IINPANKDASGKPLSTSMKSTIERLRTWDSRSKVNASSDRNLRQALSELATLKDKLSLSD 142
Query: 126 TIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIG 185
++++A ++++ + +KGRS A+ ++ LY ACR PRT K++ I +K+I
Sbjct: 143 PVIEKAAYVYRKALEKGLVKGRSISALIASALYAACRDTETPRTLKDVSDAGNIKRKDIA 202
Query: 186 RCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPIS 245
RC++++ K L+ + ++ +SR S + + ++ A + + A E + G+ P+
Sbjct: 203 RCYRILHKELDLKMPVVDPVQCVSRIASKVQISERTKRYAVKVLKDAQEHEESAGKDPMG 262
Query: 246 VAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
+AAAA+Y+A + + R+Q++I + A V EVTIR YK
Sbjct: 263 LAAAALYLACVRNGEDRTQRDIAEAANVTEVTIRNRYK 300
Score = 43.9 bits (102), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 44/80 (55%)
Query: 215 LSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVA 274
LSL + V + A ++ RKA+E +V GRS ++ A+A+Y A + + R+ K++ D +
Sbjct: 138 LSLSDPVIEKAAYVYRKALEKGLVKGRSISALIASALYAACRDTETPRTLKDVSDAGNIK 197
Query: 275 EVTIRQSYKLMYPHASKLFP 294
I + Y++++ P
Sbjct: 198 RKDIARCYRILHKELDLKMP 217
>gi|448360606|ref|ZP_21549237.1| Transcription factor TFIIB cyclin-related protein [Natrialba
asiatica DSM 12278]
gi|445653219|gb|ELZ06091.1| Transcription factor TFIIB cyclin-related protein [Natrialba
asiatica DSM 12278]
Length = 271
Score = 152 bits (383), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 91/262 (34%), Positives = 147/262 (56%), Gaps = 11/262 (4%)
Query: 32 LVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLSTMIGPGRGDASFDGFG- 90
+V+ + VID G EWR F N SRVG P ++ L+T I DA
Sbjct: 1 MVIEEEVIDRGPEWRAF-NAAERDSKSRVGAPTTQTMHDKGLTTTIDWKNKDAYGRSLSS 59
Query: 91 --------MSKYQNR-RTMNSSDRALLNAIREINSMADRINLTKTIVDRANNLFKQVHDG 141
+ K+Q R RT ++ +R L A+ E + MA + + +++ + A+ L+++ D
Sbjct: 60 DKRSQMNRLRKWQERIRTKDAGERNLQFALSETDRMASALGVPRSVREVASVLYRRALDE 119
Query: 142 KNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGRCFKLILKALETSVDL 201
++GRS + +A++ LY ACR EG+PR+ E+ AVS++++ EIGR ++ I + L ++
Sbjct: 120 DLIRGRSIEGVATSTLYAACRMEGIPRSLDEVAAVSRVNRMEIGRTYRYISQELGLEMEP 179
Query: 202 ITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDK 261
+ ++ RFCS L LP VQ A I E ++ G+SP AAAAIY ++ ++K
Sbjct: 180 VNPKKYVPRFCSELDLPEEVQAKANEIIDTTAEQGMLSGKSPTGYAAAAIYASALLCNEK 239
Query: 262 RSQKEIGDIAGVAEVTIRQSYK 283
++QKE+ D+A V EVTIR Y+
Sbjct: 240 KTQKEVADVAQVTEVTIRNRYQ 261
>gi|448585353|ref|ZP_21647746.1| transcription initiation factor TFB [Haloferax gibbonsii ATCC
33959]
gi|445726053|gb|ELZ77670.1| transcription initiation factor TFB [Haloferax gibbonsii ATCC
33959]
Length = 332
Score = 152 bits (383), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 101/304 (33%), Positives = 162/304 (53%), Gaps = 22/304 (7%)
Query: 5 KVC--CYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGG 62
+VC C H L+ D G+ IC +CGLVV D V+D G EWR F + + SRVG
Sbjct: 35 QVCPECSGH----LVTDEEHGETICEDCGLVVEDTVVDRGPEWRAFDSAERD-SKSRVGA 89
Query: 63 PENPLLNGSDLSTMIGPGRGDASFDGFGMSKYQNR------------RTMNSSDRALLNA 110
P +++ LST IG DA G +S Q RT +S +R L A
Sbjct: 90 PTTKMMHDKGLSTNIGWQNKDAY--GKSLSPRQREQMQRLRTWNERFRTRDSKERNLKQA 147
Query: 111 IREINSMADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTF 170
+ EI+ MA + L + + + A+ ++++ + L GRS + +A+A LY + R G PR+
Sbjct: 148 LGEIDRMASALGLPENVRETASVIYRRALNDDLLPGRSIEGVATAALYASARMAGTPRSL 207
Query: 171 KEICAVSKISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIAR 230
E+ VS++ K E+ R ++ +++ L+ + ++ RF S L L + ++ A + R
Sbjct: 208 DELEKVSRVDKMELTRTYRYVVRELKLEIKPADPEQYVPRFASELGLSDEAERQARKLLR 267
Query: 231 KAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK-LMYPHA 289
A E I G+SP+ +AAAA+Y A+ +++K +Q E+ +A ++EVTIR YK L+
Sbjct: 268 DAKETGIHSGKSPVGLAAAAVYAAALLTNEKVTQSEVSTVADISEVTIRNRYKELLEVQD 327
Query: 290 SKLF 293
LF
Sbjct: 328 GTLF 331
>gi|448502246|ref|ZP_21612519.1| transcription factor TFIIB cyclin-related protein [Halorubrum
coriense DSM 10284]
gi|445694402|gb|ELZ46531.1| transcription factor TFIIB cyclin-related protein [Halorubrum
coriense DSM 10284]
Length = 325
Score = 151 bits (382), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 97/277 (35%), Positives = 150/277 (54%), Gaps = 11/277 (3%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLST 75
L D G+ +C +CGLVV + ID G EWR F + K + SRVG P +++ LST
Sbjct: 37 LATDTEHGETVCVDCGLVVEEDEIDRGPEWRAF-DSKEKDNKSRVGAPTTNMMHDKGLST 95
Query: 76 MIGPGRGDA---SFDGFGMSKYQNRRTMN-------SSDRALLNAIREINSMADRINLTK 125
IG DA S K Q RT N S +R L A+ EI+ MA + L
Sbjct: 96 NIGWQDKDAYGKSLSSRQREKMQRLRTWNERFRTRDSKERNLKQALGEIDRMASALGLPD 155
Query: 126 TIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIG 185
+ + A+ ++++ D L GRS + +++A LY A RQ G PR+ EI VS++ K EI
Sbjct: 156 NVRETASVIYRRALDEDLLPGRSIEGVSTASLYAAARQAGTPRSLDEIAGVSRVEKDEIA 215
Query: 186 RCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPIS 245
R ++ +++ L+ + ++ RF S+L L + ++ A + A E I G+SP+
Sbjct: 216 RTYRYVVRELKLEIQPADPESYVPRFASDLGLSDEAERRARSLLDTAKEQGIHSGKSPVG 275
Query: 246 VAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSY 282
+AAAA+Y AS ++K +Q E+ ++A ++EVTIR Y
Sbjct: 276 LAAAAVYAASLLVNEKVTQSEVSEVANISEVTIRNRY 312
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 49/78 (62%)
Query: 208 MSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEI 267
+ R S L LP+ V++ A+ I R+A++ D++PGRS V+ A++Y A++ + RS EI
Sbjct: 144 IDRMASALGLPDNVRETASVIYRRALDEDLLPGRSIEGVSTASLYAAARQAGTPRSLDEI 203
Query: 268 GDIAGVAEVTIRQSYKLM 285
++ V + I ++Y+ +
Sbjct: 204 AGVSRVEKDEIARTYRYV 221
>gi|448303109|ref|ZP_21493059.1| transcription factor TFIIB cyclin-related protein [Natronorubrum
sulfidifaciens JCM 14089]
gi|445594116|gb|ELY48283.1| transcription factor TFIIB cyclin-related protein [Natronorubrum
sulfidifaciens JCM 14089]
Length = 323
Score = 151 bits (382), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 98/292 (33%), Positives = 159/292 (54%), Gaps = 17/292 (5%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTF-SNEKSGVDPSRVGGPENPLLNGSDLS 74
LI D + +C++CGLVV + ID G EWR F + EK SRVG P +++ LS
Sbjct: 35 LISDTEHAETVCTDCGLVVEEDEIDRGPEWRAFDAAEKD--QKSRVGAPTTKMMHDQGLS 92
Query: 75 TMIGPGRGDASFDGFGMSKYQNR------------RTMNSSDRALLNAIREINSMADRIN 122
T IG DA G +S Q + RT +S +R L A+ EI+ MA +
Sbjct: 93 TNIGWQDKDAY--GRALSSRQRQKMQRLRTWNERFRTRDSKERNLKQALGEIDRMASALG 150
Query: 123 LTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKK 182
L + + + A+ ++++ + L GRS + +A+A LY A RQ G PR+ EI AVS++ K
Sbjct: 151 LPENVRETASVIYRRALEEDLLPGRSIEGVATASLYAAARQAGTPRSLDEISAVSRVEKM 210
Query: 183 EIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRS 242
E+ R ++ I++ L V ++ RF S+L L + ++ A + A + + G+S
Sbjct: 211 ELTRTYRYIIRELGLEVKPADPEHYVPRFVSDLDLSDETERMARELLESARQEGVHSGKS 270
Query: 243 PISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKLFP 294
P+ +AAAA+Y A+ +++K +Q ++ D+A ++EVTIR YK + + P
Sbjct: 271 PVGLAAAAVYAAALLTNEKVTQNDVSDVASISEVTIRNRYKELLEASDTAAP 322
>gi|354611558|ref|ZP_09029514.1| Transcription initiation factor IIB [Halobacterium sp. DL1]
gi|353196378|gb|EHB61880.1| Transcription initiation factor IIB [Halobacterium sp. DL1]
Length = 325
Score = 151 bits (382), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 98/281 (34%), Positives = 152/281 (54%), Gaps = 13/281 (4%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTF-SNEKSGVDPSRVGGPENPLLNGSDLS 74
++ D G+ +C+ECGLVV + ID G EWR F SNEK SRVG P +++ LS
Sbjct: 39 VVNDEEHGESVCTECGLVVEEDSIDRGPEWRAFNSNEKDS--KSRVGAPTTNMMHDKGLS 96
Query: 75 TMIGPGRGDASFDGFG---------MSKYQNR-RTMNSSDRALLNAIREINSMADRINLT 124
T IG DA + + K+ R RT NS +R L A+ EI M+ + L
Sbjct: 97 TNIGWQNKDAYGNSLSSNQRQKMQRLRKWNERFRTRNSKERNLKQALGEIERMSSALGLP 156
Query: 125 KTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEI 184
K + + A+ ++++ L GRS + +A++ LY A RQ PR+ E+ VS+I E
Sbjct: 157 KEVRETASVIYRRALSEDLLPGRSIEGVATSALYAAARQMQTPRSIDEVANVSRIDAMEF 216
Query: 185 GRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPI 244
R ++ I++ L V ++ RF S L LP+ V++ A + A + + G+SP+
Sbjct: 217 KRTYRYIVRELGLEVAPADPASYVPRFASELDLPDEVERRARELLDNAQKDGVTSGKSPV 276
Query: 245 SVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLM 285
+AAAAIY AS ++ K +Q ++ D+ V+EVTIR Y+ +
Sbjct: 277 GLAAAAIYAASLLTNHKVTQSQVSDVTDVSEVTIRNRYQEL 317
>gi|448540715|ref|ZP_21623636.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-646]
gi|448549017|ref|ZP_21627793.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-645]
gi|448555808|ref|ZP_21631737.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-644]
gi|445708868|gb|ELZ60703.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-646]
gi|445713706|gb|ELZ65481.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-645]
gi|445717331|gb|ELZ69049.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-644]
Length = 332
Score = 151 bits (382), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 98/294 (33%), Positives = 158/294 (53%), Gaps = 17/294 (5%)
Query: 4 NKVC--CYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVG 61
+VC C H L+ D G+ IC +CGLVV D V+D G EWR F + + SRVG
Sbjct: 34 TQVCPECSGH----LVTDEEHGETICEDCGLVVEDTVVDRGPEWRAFDSAERD-SKSRVG 88
Query: 62 GPENPLLNGSDLSTMIGPGRGDA---SFDGFGMSKYQNRRTMN-------SSDRALLNAI 111
P +++ LST IG DA S + Q RT N S +R L A+
Sbjct: 89 APTTKMMHDKGLSTNIGWQNKDAYGKSLSPRQREQMQRLRTWNERFRTRDSKERNLKQAL 148
Query: 112 REINSMADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFK 171
EI+ MA + L + + + A+ ++++ + L GRS + +A++ LY + R G PR+
Sbjct: 149 GEIDRMASALGLPENVRETASVIYRRALNDDLLPGRSIEGVATSALYASARMAGTPRSLD 208
Query: 172 EICAVSKISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARK 231
E+ VS++ K E+ R ++ I++ L+ + ++ RF S L L + ++ A + R
Sbjct: 209 ELEKVSRVDKMELTRTYRYIVRELKLEIKPADPEQYVPRFASELGLSDEAERQARQLLRD 268
Query: 232 AVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLM 285
A E I G+SP+ +AAAA+Y A+ +++K +Q E+ +A ++EVTIR YK +
Sbjct: 269 AKETGIHSGKSPVGLAAAAVYAAALLTNEKVTQSEVSTVADISEVTIRNRYKEL 322
>gi|448311268|ref|ZP_21501032.1| transcription factor TFIIB cyclin-like protein [Natronolimnobius
innermongolicus JCM 12255]
gi|445605096|gb|ELY59027.1| transcription factor TFIIB cyclin-like protein [Natronolimnobius
innermongolicus JCM 12255]
Length = 329
Score = 151 bits (382), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 95/278 (34%), Positives = 154/278 (55%), Gaps = 13/278 (4%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTF-SNEKSGVDPSRVGGPENPLLNGSDLS 74
L+ D G+ +C +CGLVV + +D G EWR F + EK+ + SRVG P ++ LS
Sbjct: 41 LVVDDEHGETVCEDCGLVVEEDSVDRGPEWRAFDATEKN--EKSRVGAPTTNTMHDKGLS 98
Query: 75 TMIGPGRGDASFDGFG---------MSKYQNR-RTMNSSDRALLNAIREINSMADRINLT 124
T I DA + G + K+ R RT +S +R L A+ EI+ MA + L
Sbjct: 99 TNIDWRNKDAYGNSLGSRQREKMQRLRKWNERFRTRDSKERNLKQALGEIDRMASALGLP 158
Query: 125 KTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEI 184
+ + A+ ++++ D L GRS + +++AC+Y A RQ GVPR+ EI VS++ K EI
Sbjct: 159 TNVRETASVIYRRALDEDLLPGRSIEGVSTACVYAAARQAGVPRSLDEIADVSRVEKNEI 218
Query: 185 GRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPI 244
R ++ +++ L V ++ RF S L L + + A + + A E + G+SP+
Sbjct: 219 ARTYRYVVRELGLEVQPADPESYVPRFASGLELSDEAEHRARALLQNAKEKGVHSGKSPV 278
Query: 245 SVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSY 282
+AAAA+Y A+ +++K +Q + D+A ++EVTIR Y
Sbjct: 279 GLAAAAVYAAALLTNEKTTQAAVSDVADISEVTIRNRY 316
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 48/78 (61%)
Query: 208 MSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEI 267
+ R S L LP V++ A+ I R+A++ D++PGRS V+ A +Y A++ + RS EI
Sbjct: 148 IDRMASALGLPTNVRETASVIYRRALDEDLLPGRSIEGVSTACVYAAARQAGVPRSLDEI 207
Query: 268 GDIAGVAEVTIRQSYKLM 285
D++ V + I ++Y+ +
Sbjct: 208 ADVSRVEKNEIARTYRYV 225
>gi|448394859|ref|ZP_21568456.1| transcription factor TFIIB cyclin-related protein [Haloterrigena
salina JCM 13891]
gi|445661995|gb|ELZ14770.1| transcription factor TFIIB cyclin-related protein [Haloterrigena
salina JCM 13891]
Length = 329
Score = 151 bits (382), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 95/278 (34%), Positives = 154/278 (55%), Gaps = 13/278 (4%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTF-SNEKSGVDPSRVGGPENPLLNGSDLS 74
L+ D G+ +C +CGLVV + +D G EWR F + EK+ + SRVG P ++ LS
Sbjct: 41 LVVDDEHGETVCEDCGLVVEEDSVDRGPEWRAFDATEKN--EKSRVGAPTTNTMHDKGLS 98
Query: 75 TMIGPGRGDASFDGFG---------MSKYQNR-RTMNSSDRALLNAIREINSMADRINLT 124
T I DA + G + K+ R RT +S +R L A+ EI+ MA + L
Sbjct: 99 TNIDWRNKDAYGNSLGSRQREKMQRLRKWNERFRTRDSKERNLKQALGEIDRMASALGLP 158
Query: 125 KTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEI 184
+ + A+ ++++ D L GRS + +++AC+Y A RQ GVPR+ EI VS++ K EI
Sbjct: 159 TNVRETASVIYRRALDEDLLPGRSIEGVSTACVYAAARQAGVPRSLDEIADVSRVEKNEI 218
Query: 185 GRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPI 244
R ++ +++ L V ++ RF S L L + + A + + A E + G+SP+
Sbjct: 219 ARTYRYVVRELGLEVQPADPESYVPRFASGLDLSDEAEHRARALLQNAKEKGVHSGKSPV 278
Query: 245 SVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSY 282
+AAAA+Y A+ +++K +Q + D+A ++EVTIR Y
Sbjct: 279 GLAAAAVYAAALLTNEKTTQAAVSDVADISEVTIRNRY 316
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 48/78 (61%)
Query: 208 MSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEI 267
+ R S L LP V++ A+ I R+A++ D++PGRS V+ A +Y A++ + RS EI
Sbjct: 148 IDRMASALGLPTNVRETASVIYRRALDEDLLPGRSIEGVSTACVYAAARQAGVPRSLDEI 207
Query: 268 GDIAGVAEVTIRQSYKLM 285
D++ V + I ++Y+ +
Sbjct: 208 ADVSRVEKNEIARTYRYV 225
>gi|292655824|ref|YP_003535721.1| transcription initiation factor TFB [Haloferax volcanii DS2]
gi|448289811|ref|ZP_21480974.1| transcription initiation factor TFB [Haloferax volcanii DS2]
gi|448570851|ref|ZP_21639362.1| transcription initiation factor TFB [Haloferax lucentense DSM
14919]
gi|448595749|ref|ZP_21653196.1| transcription initiation factor TFB [Haloferax alexandrinus JCM
10717]
gi|14195256|sp|Q9YGA5.1|TFB2_HALVD RecName: Full=Transcription initiation factor IIB 2; Short=TFIIB 2
gi|5410473|gb|AAD43074.1|AF143693_1 transcription factor B [Haloferax volcanii]
gi|291372841|gb|ADE05068.1| transcription initiation factor TFB [Haloferax volcanii DS2]
gi|445581328|gb|ELY35689.1| transcription initiation factor TFB [Haloferax volcanii DS2]
gi|445722769|gb|ELZ74420.1| transcription initiation factor TFB [Haloferax lucentense DSM
14919]
gi|445742203|gb|ELZ93698.1| transcription initiation factor TFB [Haloferax alexandrinus JCM
10717]
Length = 332
Score = 151 bits (382), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 98/296 (33%), Positives = 159/296 (53%), Gaps = 21/296 (7%)
Query: 4 NKVC--CYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVG 61
+VC C H L+ D G+ IC +CGLVV D V+D G EWR F + + SRVG
Sbjct: 34 TQVCPECSGH----LVTDEEHGETICEDCGLVVEDTVVDRGPEWRAFDSAERD-SKSRVG 88
Query: 62 GPENPLLNGSDLSTMIGPGRGDASFDGFGMSKYQNR------------RTMNSSDRALLN 109
P +++ LST IG DA G +S Q RT +S +R L
Sbjct: 89 APTTKMMHDKGLSTNIGWQNKDAY--GKSLSPRQREQMQRLRTWNERFRTRDSKERNLKQ 146
Query: 110 AIREINSMADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRT 169
A+ EI+ MA + L + + + A+ ++++ + L GRS + +A++ LY + R G PR+
Sbjct: 147 ALGEIDRMASALGLPENVRETASVIYRRALNDDLLPGRSIEGVATSALYASARMAGTPRS 206
Query: 170 FKEICAVSKISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIA 229
E+ VS++ K E+ R ++ I++ L+ + ++ RF S L L + ++ A +
Sbjct: 207 LDELEKVSRVDKMELTRTYRYIVRELKLEIKPADPEQYVPRFASELGLSDEAERQARQLL 266
Query: 230 RKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLM 285
R A E I G+SP+ +AAAA+Y A+ +++K +Q E+ +A ++EVTIR YK +
Sbjct: 267 RDAKETGIHSGKSPVGLAAAAVYAAALLTNEKVTQSEVSTVADISEVTIRNRYKEL 322
>gi|448352869|ref|ZP_21541649.1| transcription factor TFIIB cyclin-like protein [Natrialba
hulunbeirensis JCM 10989]
gi|445641511|gb|ELY94588.1| transcription factor TFIIB cyclin-like protein [Natrialba
hulunbeirensis JCM 10989]
Length = 329
Score = 151 bits (382), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 98/290 (33%), Positives = 155/290 (53%), Gaps = 13/290 (4%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTF-SNEKSGVDPSRVGGPENPLLNGSDLS 74
LI D + +C ECGLVV + ID G EWR F + EK SRVG P +++ LS
Sbjct: 41 LISDDEHAETVCQECGLVVEEDEIDRGPEWRAFDAAEKD--QKSRVGAPTTNMMHDQGLS 98
Query: 75 TMIGPGRGDA---SFDGFGMSKYQNRRTMN-------SSDRALLNAIREINSMADRINLT 124
T IG DA S K Q RT N S +R L A+ EI+ MA + L
Sbjct: 99 TNIGWQDKDAYGKSLSSRQRQKMQRLRTWNERFRTRDSKERNLKQALGEIDRMASALGLP 158
Query: 125 KTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEI 184
+ + + A+ ++++ + L GRS + +A++ LY A RQ G PR+ EI AVS++ K E+
Sbjct: 159 ENVRETASVIYRRALEEDLLPGRSIEGVATSSLYAAARQAGTPRSLDEISAVSRVDKMEL 218
Query: 185 GRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPI 244
R ++ I++ L V ++ RF S+L L + ++ A + A + + G+SP+
Sbjct: 219 TRTYRYIIRELGLEVKPADPEHYVPRFVSDLDLSDETERMARELLESARQEGVHSGKSPV 278
Query: 245 SVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKLFP 294
+AAA +Y A+ +++K +Q E+ ++A ++EVTIR YK + + P
Sbjct: 279 GLAAAGVYAAALLTNEKVTQNEVSEVASISEVTIRNRYKELLEASDTAAP 328
>gi|448414464|ref|ZP_21577533.1| transcription initiation factor iib (tfiib) [Halosarcina pallida
JCM 14848]
gi|445682030|gb|ELZ34454.1| transcription initiation factor iib (tfiib) [Halosarcina pallida
JCM 14848]
Length = 340
Score = 151 bits (381), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 93/281 (33%), Positives = 158/281 (56%), Gaps = 13/281 (4%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTF-SNEKSGVDPSRVGGPENPLLNGSDLS 74
L+ D G+ +C +CGLVV + +D G EWR F S+E+ SRVG P +++ LS
Sbjct: 52 LVSDEARGETVCGDCGLVVEEDAVDHGPEWRAFDSSERDS--KSRVGAPTTRMMHDKGLS 109
Query: 75 TMIGPGRGDASFDGFG---------MSKYQNR-RTMNSSDRALLNAIREINSMADRINLT 124
T IG DA + + + R RT NS +R L A+ EI+ MA + L
Sbjct: 110 TNIGWQNKDAYGNSLSARQREQMQRLRTWNERFRTRNSKERNLKQALGEIDRMASALGLP 169
Query: 125 KTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEI 184
+ + + A+ ++++ L GRS + +A+A LY A RQ G PR+ E+ VS++ K E+
Sbjct: 170 ENVRETASVIYRRALGDDLLPGRSIEGVATASLYAAARQAGTPRSLDELETVSRVDKMEL 229
Query: 185 GRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPI 244
R ++ I++ L+ ++ ++ RF S L + + ++ A + R A E+ I G+SP+
Sbjct: 230 TRTYRYIVRELKLEIEPADPEQYVPRFASELGISDEAERQAHTLLRGAKEVGIHSGKSPV 289
Query: 245 SVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLM 285
+AAAA+Y A+ +++K +Q ++ ++A ++EVTIR YK +
Sbjct: 290 GLAAAAVYAAALLTNEKVTQSQVSEVASISEVTIRNRYKEL 330
>gi|448320031|ref|ZP_21509519.1| Transcription factor TFIIB cyclin-related protein [Natronococcus
amylolyticus DSM 10524]
gi|445606437|gb|ELY60341.1| Transcription factor TFIIB cyclin-related protein [Natronococcus
amylolyticus DSM 10524]
Length = 326
Score = 151 bits (381), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 95/278 (34%), Positives = 155/278 (55%), Gaps = 13/278 (4%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTF-SNEKSGVDPSRVGGPENPLLNGSDLS 74
L+ D G+ +C +CGLVV + +D G EWR F ++EK+ + SRVG P ++ LS
Sbjct: 38 LVVDDEHGETVCEDCGLVVEEDSVDRGPEWRAFDASEKN--EKSRVGAPTTNTMHDKGLS 95
Query: 75 TMIGPGRGDASFDGFG---------MSKYQNR-RTMNSSDRALLNAIREINSMADRINLT 124
T I DA + G + K+ R RT +S +R L A+ EI+ MA + L
Sbjct: 96 TNIDWRNKDAYGNSLGSRQREKMQRLRKWNERFRTRDSKERNLKQALGEIDRMASALGLP 155
Query: 125 KTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEI 184
+ + A+ ++++ D L GRS + +++AC+Y A RQ GVPR+ EI VS++ K EI
Sbjct: 156 TNVRETASVIYRRALDEDLLPGRSIEGVSTACVYAAARQAGVPRSLDEIADVSRVEKNEI 215
Query: 185 GRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPI 244
R ++ +++ L V ++ RF S L L + + A + + A E + G+SP+
Sbjct: 216 ARTYRYVVRELGLEVQPADPESYVPRFASGLELSDEAEHRARGLLQNAKEKGVHSGKSPV 275
Query: 245 SVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSY 282
+AAAA+Y A+ +++K +Q + D+A ++EVTIR Y
Sbjct: 276 GLAAAAVYAAALLTNEKTTQAAVSDVADISEVTIRNRY 313
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 48/78 (61%)
Query: 208 MSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEI 267
+ R S L LP V++ A+ I R+A++ D++PGRS V+ A +Y A++ + RS EI
Sbjct: 145 IDRMASALGLPTNVRETASVIYRRALDEDLLPGRSIEGVSTACVYAAARQAGVPRSLDEI 204
Query: 268 GDIAGVAEVTIRQSYKLM 285
D++ V + I ++Y+ +
Sbjct: 205 ADVSRVEKNEIARTYRYV 222
>gi|397773294|ref|YP_006540840.1| Transcription factor TFIIB cyclin-related protein [Natrinema sp.
J7-2]
gi|448340933|ref|ZP_21529900.1| Transcription factor TFIIB cyclin-related protein [Natrinema gari
JCM 14663]
gi|397682387|gb|AFO56764.1| Transcription factor TFIIB cyclin-related protein [Natrinema sp.
J7-2]
gi|445629271|gb|ELY82562.1| Transcription factor TFIIB cyclin-related protein [Natrinema gari
JCM 14663]
Length = 326
Score = 151 bits (381), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 98/290 (33%), Positives = 158/290 (54%), Gaps = 13/290 (4%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTF-SNEKSGVDPSRVGGPENPLLNGSDLS 74
LI D + +C++CGLVV + ID G EWR F + EK + SRVG P +++ LS
Sbjct: 38 LISDDEHAETVCTDCGLVVEEDEIDRGPEWRAFDAAEKD--EKSRVGAPTTNMMHDQGLS 95
Query: 75 TMIGPGRGDA---SFDGFGMSKYQNRRTMN-------SSDRALLNAIREINSMADRINLT 124
T IG DA S K Q RT N S +R L A+ EI+ MA + L
Sbjct: 96 TNIGWQDKDAYGRSLSSRQRQKMQRLRTWNERFRTRDSKERNLKQALGEIDRMASALGLP 155
Query: 125 KTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEI 184
+ + + A+ ++++ + L GRS + +A++ LY A RQ G PR+ EI AVS++ K E+
Sbjct: 156 ENVRETASVIYRRALEEDLLPGRSIEGVATSSLYAAARQAGTPRSLDEISAVSRVEKMEL 215
Query: 185 GRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPI 244
R ++ I++ L V ++ RF S+L L + ++ A + A + + G+SP+
Sbjct: 216 TRTYRYIIRELGLEVKPADPEHYVPRFVSDLDLSDETERMARELLESARQEGVHSGKSPV 275
Query: 245 SVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKLFP 294
+AAAA+Y A+ +++K +Q E+ ++A ++EVTIR YK + + P
Sbjct: 276 GLAAAAVYAAALLTNEKVTQNEVSEVASISEVTIRNRYKELLEASDTAAP 325
>gi|257388456|ref|YP_003178229.1| transcription factor TFIIB cyclin-related protein [Halomicrobium
mukohataei DSM 12286]
gi|257170763|gb|ACV48522.1| Transcription factor TFIIB cyclin-related [Halomicrobium mukohataei
DSM 12286]
Length = 324
Score = 151 bits (381), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 95/276 (34%), Positives = 153/276 (55%), Gaps = 13/276 (4%)
Query: 19 DYRAGDQICSECGLVVGDRVIDVGSEWRTF-SNEKSGVDPSRVGGPENPLLNGSDLSTMI 77
D G+ +C ECGLVV + ID G EWR F ++E+ SRVG P +++ LST I
Sbjct: 41 DAEHGETVCEECGLVVEEDEIDHGPEWRAFDASERDS--KSRVGAPTTKMMHDKGLSTNI 98
Query: 78 GPGRGDASFDGFGMSKYQNR----------RTMNSSDRALLNAIREINSMADRINLTKTI 127
G DA + S+ Q RT +S +R L A+ EI+ MA + L K +
Sbjct: 99 GWQDKDAYGNSLSSSQRQKMQRLRTWNERFRTRDSKERNLKQALGEIDRMASALGLPKNV 158
Query: 128 VDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGRC 187
+ A+ ++++ D L GRS + +A++ LY A RQ PR+ E+ VS++ + E+ R
Sbjct: 159 RETASVIYRRALDEDLLPGRSIEGVATSALYAAARQANNPRSLDEMTHVSRVERMELTRT 218
Query: 188 FKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVA 247
++ I++ L V ++ RFCS LSL + ++ A + A + I+ G+SP+ +A
Sbjct: 219 YRYIIRELGLEVAPAKPESYVPRFCSELSLSDETERRARELIEAARDGGILSGKSPVGIA 278
Query: 248 AAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
AAA+Y A+ +++K +Q E+ +A ++EVTIR YK
Sbjct: 279 AAAVYAAALLTNEKVTQSEVSGVADISEVTIRNRYK 314
>gi|448591526|ref|ZP_21651014.1| transcription initiation factor TFB [Haloferax elongans ATCC
BAA-1513]
gi|445733500|gb|ELZ85069.1| transcription initiation factor TFB [Haloferax elongans ATCC
BAA-1513]
Length = 331
Score = 151 bits (381), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 94/282 (33%), Positives = 154/282 (54%), Gaps = 15/282 (5%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLST 75
L++D G+ +C ECGLVV D V+D G EWR F + SRVG P +++ LST
Sbjct: 43 LVQDNEHGETVCGECGLVVEDTVVDRGPEWRAFDAAERD-SKSRVGAPTTKMMHDKGLST 101
Query: 76 MIGPGRGDASFDGFGMSKYQNR------------RTMNSSDRALLNAIREINSMADRINL 123
IG DA G +S Q RT +S +R L A+ EI+ MA + L
Sbjct: 102 NIGWQNKDAY--GKSLSPRQREQMQRLRTWNERFRTRDSKERNLKQALGEIDRMASALGL 159
Query: 124 TKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKE 183
+ + + A+ ++++ + L GRS + +A+A LY A R PR+ E+ VS++ K E
Sbjct: 160 PENVRETASVIYRRALNDDLLPGRSIEGVATASLYAAARMADTPRSLDELEKVSRVEKME 219
Query: 184 IGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSP 243
+ R ++ I++ L+ + ++ RF S L L + ++ A + R A E + G+SP
Sbjct: 220 LTRTYRYIVRELKLEIKPADPEQYVPRFASELGLSDEAERQARELLRGAKETGVHSGKSP 279
Query: 244 ISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLM 285
+ +AAAA+Y A+ +++K +Q E+ ++A ++EVTIR YK +
Sbjct: 280 VGLAAAAVYAAALLTNEKVTQSEVSEVADISEVTIRNRYKEL 321
>gi|448345937|ref|ZP_21534826.1| Transcription factor TFIIB cyclin-related protein [Natrinema
altunense JCM 12890]
gi|445633870|gb|ELY87057.1| Transcription factor TFIIB cyclin-related protein [Natrinema
altunense JCM 12890]
Length = 326
Score = 151 bits (381), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 98/290 (33%), Positives = 158/290 (54%), Gaps = 13/290 (4%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTF-SNEKSGVDPSRVGGPENPLLNGSDLS 74
LI D + +C++CGLVV + ID G EWR F + EK + SRVG P +++ LS
Sbjct: 38 LISDDEHAETVCTDCGLVVEEDEIDRGPEWRAFDAAEKD--EKSRVGAPTTNMMHDQGLS 95
Query: 75 TMIGPGRGDA---SFDGFGMSKYQNRRTMN-------SSDRALLNAIREINSMADRINLT 124
T IG DA S K Q RT N S +R L A+ EI+ MA + L
Sbjct: 96 TNIGWQDKDAYGRSLSSRQRQKMQRLRTWNERFRTRDSKERNLKQALGEIDRMASALGLP 155
Query: 125 KTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEI 184
+ + + A+ ++++ + L GRS + +A++ LY A RQ G PR+ EI AVS++ K E+
Sbjct: 156 ENVRETASVIYRRALEEDLLPGRSIEGVATSSLYAAARQAGTPRSLDEISAVSRVEKMEL 215
Query: 185 GRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPI 244
R ++ I++ L V ++ RF S+L L + ++ A + A + + G+SP+
Sbjct: 216 TRTYRYIIRELGLEVKPADPEHYVPRFVSDLDLSDETERMARELLESARQEGVHSGKSPV 275
Query: 245 SVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKLFP 294
+AAAA+Y A+ +++K +Q E+ ++A ++EVTIR YK + + P
Sbjct: 276 GLAAAAVYAAALLTNEKVTQNEVSEVASISEVTIRNRYKELLEASDTAAP 325
>gi|448336782|ref|ZP_21525873.1| Transcription factor TFIIB cyclin-related protein [Natrinema
pallidum DSM 3751]
gi|445627873|gb|ELY81188.1| Transcription factor TFIIB cyclin-related protein [Natrinema
pallidum DSM 3751]
Length = 326
Score = 151 bits (381), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 98/290 (33%), Positives = 158/290 (54%), Gaps = 13/290 (4%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTF-SNEKSGVDPSRVGGPENPLLNGSDLS 74
LI D + +C++CGLVV + ID G EWR F + EK + SRVG P +++ LS
Sbjct: 38 LISDDEHAETVCTDCGLVVEEDEIDRGPEWRAFDAAEKD--EKSRVGAPTTNMMHDQGLS 95
Query: 75 TMIGPGRGDA---SFDGFGMSKYQNRRTMN-------SSDRALLNAIREINSMADRINLT 124
T IG DA S K Q RT N S +R L A+ EI+ MA + L
Sbjct: 96 TNIGWQDKDAYGRSLSSRQRQKMQRLRTWNERFRTRDSKERNLKQALGEIDRMASALGLP 155
Query: 125 KTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEI 184
+ + + A+ ++++ + L GRS + +A++ LY A RQ G PR+ EI AVS++ K E+
Sbjct: 156 ENVRETASVIYRRALEEDLLPGRSIEGVATSSLYAAARQAGTPRSLDEISAVSRVEKMEL 215
Query: 185 GRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPI 244
R ++ I++ L V ++ RF S+L L + ++ A + A + + G+SP+
Sbjct: 216 TRTYRYIIRELGLEVKPADPEHYVPRFVSDLDLSDETERMARELLESARQEGVHSGKSPV 275
Query: 245 SVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKLFP 294
+AAAA+Y A+ +++K +Q E+ ++A ++EVTIR YK + + P
Sbjct: 276 GLAAAAVYAAALLTNEKVTQNEVSEVASISEVTIRNRYKELLEASDTAAP 325
>gi|397775888|ref|YP_006543434.1| Transcription factor TFIIB cyclin-related protein [Natrinema sp.
J7-2]
gi|448342843|ref|ZP_21531788.1| Transcription factor TFIIB cyclin-related protein [Natrinema gari
JCM 14663]
gi|397684981|gb|AFO59358.1| Transcription factor TFIIB cyclin-related protein [Natrinema sp.
J7-2]
gi|445624676|gb|ELY78052.1| Transcription factor TFIIB cyclin-related protein [Natrinema gari
JCM 14663]
Length = 326
Score = 151 bits (381), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 96/281 (34%), Positives = 152/281 (54%), Gaps = 19/281 (6%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTF----SNEKSGVDPSRVGGPENPLLNGS 71
L+ D G+ +C +CGLVV + +D G EWR F NEKS RVG P ++
Sbjct: 38 LVVDDEHGETVCEDCGLVVEEDSVDRGPEWRAFDAAEKNEKS-----RVGAPTTNTMHDK 92
Query: 72 DLSTMIGPGRGDASFDGFG---------MSKYQNR-RTMNSSDRALLNAIREINSMADRI 121
LST I DA + G + K+ R RT +S +R L A+ EI+ MA +
Sbjct: 93 GLSTNIDWRNKDAYGNSLGSRQREKMQRLRKWNERFRTRDSKERNLKQALGEIDRMASAL 152
Query: 122 NLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISK 181
L + + A+ ++++ D L GRS + +++AC+Y A RQ GVPR+ EI VS++ K
Sbjct: 153 GLPTNVRETASVIYRRALDEDLLPGRSIEGVSTACVYAAARQAGVPRSLDEIADVSRVEK 212
Query: 182 KEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGR 241
EI R ++ +++ L V ++ RF S L L + + A + + A E + G+
Sbjct: 213 NEIARTYRYVVRELGLEVQPADPESYVPRFASGLELSDEAEHRARSLLQNAKEKGVHSGK 272
Query: 242 SPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSY 282
SP+ +AAAA+Y A+ +++K +Q + D+A ++EVTIR Y
Sbjct: 273 SPVGLAAAAVYAAALLTNEKTTQAAVSDVADISEVTIRNRY 313
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 48/78 (61%)
Query: 208 MSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEI 267
+ R S L LP V++ A+ I R+A++ D++PGRS V+ A +Y A++ + RS EI
Sbjct: 145 IDRMASALGLPTNVRETASVIYRRALDEDLLPGRSIEGVSTACVYAAARQAGVPRSLDEI 204
Query: 268 GDIAGVAEVTIRQSYKLM 285
D++ V + I ++Y+ +
Sbjct: 205 ADVSRVEKNEIARTYRYV 222
>gi|291333561|gb|ADD93256.1| transcription initiation factor IIB [uncultured archaeon
MedDCM-OCT-S08-C82]
Length = 242
Score = 151 bits (381), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 77/196 (39%), Positives = 122/196 (62%), Gaps = 1/196 (0%)
Query: 89 FGMSKYQNR-RTMNSSDRALLNAIREINSMADRINLTKTIVDRANNLFKQVHDGKNLKGR 147
+ M K+Q R R N+++R L A+ E++ MA R+ L K++ + A +K+ D + ++GR
Sbjct: 35 YRMRKWQKRSRVSNATERNLAMALAELDRMASRLELPKSVREAAAVNYKKAVDKRLIRGR 94
Query: 148 SNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGRCFKLILKALETSVDLITTGDF 207
S + +A+A LY ACRQ GVPRT EI S+ +KEIGR ++ +++ L+ + D+
Sbjct: 95 SIEGVAAASLYAACRQCGVPRTLDEIGQASRTGRKEIGRTYRFMVRELKMKIMPTGPEDY 154
Query: 208 MSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEI 267
+SRFCS L L V+ A + + A E ++ GR P +AA+ IY+AS +R+Q+E+
Sbjct: 155 ISRFCSGLGLDADVEAKAYELIKAAQEKELTSGRGPTGIAASIIYIASVLCGKRRTQREV 214
Query: 268 GDIAGVAEVTIRQSYK 283
++AGV EVTIR YK
Sbjct: 215 AEVAGVTEVTIRNRYK 230
Score = 45.8 bits (107), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 49/95 (51%), Gaps = 4/95 (4%)
Query: 208 MSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEI 267
+ R S L LP V++AA +KAV+ ++ GRS VAAA++Y A + R+ EI
Sbjct: 61 LDRMASRLELPKSVREAAAVNYKKAVDKRLIRGRSIEGVAAASLYAACRQCGVPRTLDEI 120
Query: 268 GDIAGVAEVTIRQSYKLMYPHAS-KLF---PQDFV 298
G + I ++Y+ M K+ P+D++
Sbjct: 121 GQASRTGRKEIGRTYRFMVRELKMKIMPTGPEDYI 155
>gi|284164125|ref|YP_003402404.1| transcription factor TFIIB cyclin-related protein [Haloterrigena
turkmenica DSM 5511]
gi|284013780|gb|ADB59731.1| Transcription factor TFIIB cyclin-related protein [Haloterrigena
turkmenica DSM 5511]
Length = 329
Score = 151 bits (381), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 95/278 (34%), Positives = 154/278 (55%), Gaps = 13/278 (4%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTF-SNEKSGVDPSRVGGPENPLLNGSDLS 74
L+ D G+ +C +CGLVV + +D G EWR F + EK+ + SRVG P ++ LS
Sbjct: 41 LVVDDEHGETVCEDCGLVVEEDSVDRGPEWRAFDATEKN--EKSRVGAPTTNTMHDKGLS 98
Query: 75 TMIGPGRGDASFDGFG---------MSKYQNR-RTMNSSDRALLNAIREINSMADRINLT 124
T I DA + G + K+ R RT +S +R L A+ EI+ MA + L
Sbjct: 99 TNIDWRNKDAYGNSLGSRQREKMQRLRKWNERFRTRDSKERNLKQALGEIDRMASALGLP 158
Query: 125 KTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEI 184
+ + A+ ++++ D L GRS + +++AC+Y A RQ GVPR+ EI VS++ K EI
Sbjct: 159 TNVRETASVIYRRALDEDLLPGRSIEGVSTACVYAAARQAGVPRSLDEIADVSRVEKNEI 218
Query: 185 GRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPI 244
R ++ +++ L V ++ RF S L L + + A + + A E + G+SP+
Sbjct: 219 ARTYRYVVRELGLEVQPADPESYVPRFASGLDLSDEAEHRARALLQNAKEKGVHSGKSPV 278
Query: 245 SVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSY 282
+AAAA+Y A+ +++K +Q + D+A ++EVTIR Y
Sbjct: 279 GLAAAAVYAAALLTNEKTTQAAVSDVADISEVTIRNRY 316
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 48/78 (61%)
Query: 208 MSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEI 267
+ R S L LP V++ A+ I R+A++ D++PGRS V+ A +Y A++ + RS EI
Sbjct: 148 IDRMASALGLPTNVRETASVIYRRALDEDLLPGRSIEGVSTACVYAAARQAGVPRSLDEI 207
Query: 268 GDIAGVAEVTIRQSYKLM 285
D++ V + I ++Y+ +
Sbjct: 208 ADVSRVEKNEIARTYRYV 225
>gi|448338899|ref|ZP_21527933.1| Transcription factor TFIIB cyclin-related protein [Natrinema
pallidum DSM 3751]
gi|448344427|ref|ZP_21533338.1| Transcription factor TFIIB cyclin-related protein [Natrinema
altunense JCM 12890]
gi|445621222|gb|ELY74700.1| Transcription factor TFIIB cyclin-related protein [Natrinema
pallidum DSM 3751]
gi|445638546|gb|ELY91674.1| Transcription factor TFIIB cyclin-related protein [Natrinema
altunense JCM 12890]
Length = 326
Score = 151 bits (381), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 96/281 (34%), Positives = 152/281 (54%), Gaps = 19/281 (6%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTF----SNEKSGVDPSRVGGPENPLLNGS 71
L+ D G+ +C +CGLVV + +D G EWR F NEKS RVG P ++
Sbjct: 38 LVVDDEHGETVCEDCGLVVEEDSVDRGPEWRAFDAAEKNEKS-----RVGAPTTNTMHDK 92
Query: 72 DLSTMIGPGRGDASFDGFG---------MSKYQNR-RTMNSSDRALLNAIREINSMADRI 121
LST I DA + G + K+ R RT +S +R L A+ EI+ MA +
Sbjct: 93 GLSTNIDWRNKDAYGNSLGSRQREKMQRLRKWNERFRTRDSKERNLKQALGEIDRMASAL 152
Query: 122 NLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISK 181
L + + A+ ++++ D L GRS + +++AC+Y A RQ GVPR+ EI VS++ K
Sbjct: 153 GLPTNVRETASVIYRRALDEDLLPGRSIEGVSTACVYAAARQAGVPRSLDEIADVSRVEK 212
Query: 182 KEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGR 241
EI R ++ +++ L V ++ RF S L L + + A + + A E + G+
Sbjct: 213 NEIARTYRYVVRELGLEVQPADPESYVPRFASGLELSDEAEHRARSLLQNAKEKGVHSGK 272
Query: 242 SPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSY 282
SP+ +AAAA+Y A+ +++K +Q + D+A ++EVTIR Y
Sbjct: 273 SPVGLAAAAVYAAALLTNEKTTQAAVSDVADISEVTIRNRY 313
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 48/78 (61%)
Query: 208 MSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEI 267
+ R S L LP V++ A+ I R+A++ D++PGRS V+ A +Y A++ + RS EI
Sbjct: 145 IDRMASALGLPTNVRETASVIYRRALDEDLLPGRSIEGVSTACVYAAARQAGVPRSLDEI 204
Query: 268 GDIAGVAEVTIRQSYKLM 285
D++ V + I ++Y+ +
Sbjct: 205 ADVSRVEKNEIARTYRYV 222
>gi|448348263|ref|ZP_21537115.1| Transcription factor TFIIB cyclin-related protein [Natrialba
taiwanensis DSM 12281]
gi|445643361|gb|ELY96413.1| Transcription factor TFIIB cyclin-related protein [Natrialba
taiwanensis DSM 12281]
Length = 271
Score = 151 bits (381), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 90/262 (34%), Positives = 147/262 (56%), Gaps = 11/262 (4%)
Query: 32 LVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLSTMIGPGRGDASFDGFG- 90
+++ + VID G EWR F N SRVG P ++ L+T I DA
Sbjct: 1 MIIEEEVIDRGPEWRAF-NAAERDSKSRVGAPTTQTMHDKGLTTTIDWKNKDAYGRSLSS 59
Query: 91 --------MSKYQNR-RTMNSSDRALLNAIREINSMADRINLTKTIVDRANNLFKQVHDG 141
+ K+Q R RT ++ +R L A+ E + MA + + +++ + A+ L+++ D
Sbjct: 60 DKRSQMNRLRKWQERIRTKDAGERNLQFALSETDRMASALGVPRSVREVASVLYRRALDE 119
Query: 142 KNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGRCFKLILKALETSVDL 201
++GRS + +A++ LY ACR EG+PR+ E+ AVS++++ EIGR ++ I + L ++
Sbjct: 120 DLIRGRSIEGVATSTLYAACRMEGIPRSLDEVAAVSRVNRMEIGRTYRYISQELGLEMEP 179
Query: 202 ITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDK 261
+ ++ RFCS L LP VQ A I E ++ G+SP AAAAIY ++ ++K
Sbjct: 180 VNPKKYVPRFCSELDLPEEVQAKANEIIDTTAEQGMLSGKSPTGYAAAAIYASALLCNEK 239
Query: 262 RSQKEIGDIAGVAEVTIRQSYK 283
++QKE+ D+A V EVTIR Y+
Sbjct: 240 KTQKEVADVAQVTEVTIRNRYQ 261
>gi|336254131|ref|YP_004597238.1| transcription initiation factor IIB [Halopiger xanaduensis SH-6]
gi|335338120|gb|AEH37359.1| Transcription initiation factor IIB [Halopiger xanaduensis SH-6]
Length = 325
Score = 151 bits (381), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 96/292 (32%), Positives = 158/292 (54%), Gaps = 17/292 (5%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTF-SNEKSGVDPSRVGGPENPLLNGSDLS 74
L+ D + +C +CGLVV + ID G EWR F + EK + SRVG P +++ LS
Sbjct: 37 LVSDAEHAETVCEDCGLVVEEDEIDRGPEWRAFDAAEKD--EKSRVGAPTTNMMHDQGLS 94
Query: 75 TMIGPGRGDASFDGFGMSKYQNR------------RTMNSSDRALLNAIREINSMADRIN 122
T IG DA G +S Q + RT +S +R L A+ EI+ MA +
Sbjct: 95 TNIGWQDKDAY--GKALSSRQRQKMQRLRTWNERFRTRDSKERNLKQALGEIDRMASALG 152
Query: 123 LTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKK 182
L + + + A+ ++++ + L GRS + +A+A LY A RQ G PR+ EI AVS++ K
Sbjct: 153 LPENVRETASVIYRRALEEDLLPGRSIEGVATASLYAAARQAGTPRSLDEISAVSRVDKM 212
Query: 183 EIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRS 242
E+ R ++ I++ L V ++ RF S+L L + ++ A + A + + G+S
Sbjct: 213 ELTRTYRYIIRELGLEVQPADPESYVPRFVSDLDLSDETERMARELLESARKAGVHSGKS 272
Query: 243 PISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKLFP 294
P+ +AAA +Y A+ +++K +Q E+ ++A ++EVTIR YK + + P
Sbjct: 273 PVGLAAAGVYAAALLTNEKVTQNEVSEVASISEVTIRNRYKELLEASDTAAP 324
>gi|448396906|ref|ZP_21569354.1| Transcription factor TFIIB cyclin-related protein [Haloterrigena
limicola JCM 13563]
gi|445673435|gb|ELZ25996.1| Transcription factor TFIIB cyclin-related protein [Haloterrigena
limicola JCM 13563]
Length = 326
Score = 151 bits (381), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 95/278 (34%), Positives = 154/278 (55%), Gaps = 13/278 (4%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTF-SNEKSGVDPSRVGGPENPLLNGSDLS 74
L+ D G+ +C +CGLVV + +D G EWR F + EK+ + SRVG P ++ LS
Sbjct: 38 LVVDDEHGETVCEDCGLVVEEDSVDRGPEWRAFDAAEKN--EKSRVGAPTTNTMHDKGLS 95
Query: 75 TMIGPGRGDASFDGFG---------MSKYQNR-RTMNSSDRALLNAIREINSMADRINLT 124
T I DA + G + K+ R RT +S +R L A+ EI+ MA + L
Sbjct: 96 TNIDWRNKDAYGNSLGSRQREKMQRLRKWNERFRTRDSKERNLKQALGEIDRMASALGLP 155
Query: 125 KTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEI 184
+ + A+ ++++ D L GRS + +++AC+Y A RQ GVPR+ EI VS++ K EI
Sbjct: 156 TNVRETASVIYRRALDEDLLPGRSIEGVSTACVYAAARQAGVPRSLDEIADVSRVEKNEI 215
Query: 185 GRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPI 244
R ++ +++ L V ++ RF S L L + + A + + A E + G+SP+
Sbjct: 216 ARTYRYVVRELGLEVQPADPESYVPRFASGLELSDEAEHRARSLLQNAKEKGVHSGKSPV 275
Query: 245 SVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSY 282
+AAAA+Y A+ +++K +Q + D+A ++EVTIR Y
Sbjct: 276 GLAAAAVYAAALLTNEKTTQAAVSDVADISEVTIRNRY 313
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 48/78 (61%)
Query: 208 MSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEI 267
+ R S L LP V++ A+ I R+A++ D++PGRS V+ A +Y A++ + RS EI
Sbjct: 145 IDRMASALGLPTNVRETASVIYRRALDEDLLPGRSIEGVSTACVYAAARQAGVPRSLDEI 204
Query: 268 GDIAGVAEVTIRQSYKLM 285
D++ V + I ++Y+ +
Sbjct: 205 ADVSRVEKNEIARTYRYV 222
>gi|448327577|ref|ZP_21516901.1| Transcription factor TFIIB cyclin-related protein [Natrinema
versiforme JCM 10478]
gi|445617824|gb|ELY71416.1| Transcription factor TFIIB cyclin-related protein [Natrinema
versiforme JCM 10478]
Length = 327
Score = 151 bits (381), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 96/281 (34%), Positives = 152/281 (54%), Gaps = 19/281 (6%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTF----SNEKSGVDPSRVGGPENPLLNGS 71
L+ D G+ +C +CGLVV + +D G EWR F NEKS RVG P ++
Sbjct: 39 LVVDDEHGETVCEDCGLVVEEDSVDRGPEWRAFDAAEKNEKS-----RVGAPTTNTMHDK 93
Query: 72 DLSTMIGPGRGDASFDGFG---------MSKYQNR-RTMNSSDRALLNAIREINSMADRI 121
LST I DA + G + K+ R RT +S +R L A+ EI+ MA +
Sbjct: 94 GLSTNIDWRNKDAYGNSLGSRQREKMQRLRKWNERFRTRDSKERNLKQALGEIDRMASAL 153
Query: 122 NLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISK 181
L + + A+ ++++ D L GRS + +++AC+Y A RQ GVPR+ EI VS++ K
Sbjct: 154 GLPTNVRETASVIYRRALDEDLLPGRSIEGVSTACVYAAARQAGVPRSLDEIADVSRVEK 213
Query: 182 KEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGR 241
EI R ++ +++ L V ++ RF S L L + + A + + A E + G+
Sbjct: 214 NEIARTYRYVVRELGLEVQPADPESYVPRFASGLELSDEAEHRARSLLQNAKEKGVHSGK 273
Query: 242 SPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSY 282
SP+ +AAAA+Y A+ +++K +Q + D+A ++EVTIR Y
Sbjct: 274 SPVGLAAAAVYAAALLTNEKTTQAAVSDVADISEVTIRNRY 314
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 48/78 (61%)
Query: 208 MSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEI 267
+ R S L LP V++ A+ I R+A++ D++PGRS V+ A +Y A++ + RS EI
Sbjct: 146 IDRMASALGLPTNVRETASVIYRRALDEDLLPGRSIEGVSTACVYAAARQAGVPRSLDEI 205
Query: 268 GDIAGVAEVTIRQSYKLM 285
D++ V + I ++Y+ +
Sbjct: 206 ADVSRVEKNEIARTYRYV 223
>gi|433592506|ref|YP_007282002.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natrinema pellirubrum DSM
15624]
gi|448334943|ref|ZP_21524096.1| Transcription factor TFIIB cyclin-related protein [Natrinema
pellirubrum DSM 15624]
gi|448384407|ref|ZP_21563245.1| Transcription factor TFIIB cyclin-related protein [Haloterrigena
thermotolerans DSM 11522]
gi|433307286|gb|AGB33098.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natrinema pellirubrum DSM
15624]
gi|445618184|gb|ELY71763.1| Transcription factor TFIIB cyclin-related protein [Natrinema
pellirubrum DSM 15624]
gi|445658473|gb|ELZ11291.1| Transcription factor TFIIB cyclin-related protein [Haloterrigena
thermotolerans DSM 11522]
Length = 326
Score = 150 bits (380), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 95/278 (34%), Positives = 154/278 (55%), Gaps = 13/278 (4%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTF-SNEKSGVDPSRVGGPENPLLNGSDLS 74
L+ D G+ +C +CGLVV + +D G EWR F + EK+ + SRVG P ++ LS
Sbjct: 38 LVVDDEHGETVCEDCGLVVEEDSVDRGPEWRAFDAAEKN--EKSRVGAPTTNTMHDKGLS 95
Query: 75 TMIGPGRGDASFDGFG---------MSKYQNR-RTMNSSDRALLNAIREINSMADRINLT 124
T I DA + G + K+ R RT +S +R L A+ EI+ MA + L
Sbjct: 96 TNIDWRNKDAYGNSLGSRQREKMQRLRKWNERFRTRDSKERNLKQALGEIDRMASALGLP 155
Query: 125 KTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEI 184
+ + A+ ++++ D L GRS + +++AC+Y A RQ GVPR+ EI VS++ K EI
Sbjct: 156 TNVRETASVIYRRALDEDLLPGRSIEGVSTACVYAAARQAGVPRSLDEIADVSRVEKNEI 215
Query: 185 GRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPI 244
R ++ +++ L V ++ RF S L L + + A + + A E + G+SP+
Sbjct: 216 ARTYRYVVRELGLEVQPADPESYVPRFASGLELSDEAEHRARSLLQNAKEKGVHSGKSPV 275
Query: 245 SVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSY 282
+AAAA+Y A+ +++K +Q + D+A ++EVTIR Y
Sbjct: 276 GLAAAAVYAAALLTNEKTTQAAVSDVADISEVTIRNRY 313
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 48/78 (61%)
Query: 208 MSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEI 267
+ R S L LP V++ A+ I R+A++ D++PGRS V+ A +Y A++ + RS EI
Sbjct: 145 IDRMASALGLPTNVRETASVIYRRALDEDLLPGRSIEGVSTACVYAAARQAGVPRSLDEI 204
Query: 268 GDIAGVAEVTIRQSYKLM 285
D++ V + I ++Y+ +
Sbjct: 205 ADVSRVEKNEIARTYRYV 222
>gi|448363683|ref|ZP_21552280.1| transcription factor TFIIB cyclin-like protein [Natrialba asiatica
DSM 12278]
gi|445645786|gb|ELY98783.1| transcription factor TFIIB cyclin-like protein [Natrialba asiatica
DSM 12278]
Length = 326
Score = 150 bits (380), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 95/278 (34%), Positives = 154/278 (55%), Gaps = 13/278 (4%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTF-SNEKSGVDPSRVGGPENPLLNGSDLS 74
L+ D G+ +C +CGLVV + +D G EWR F + EK+ + SRVG P ++ LS
Sbjct: 38 LVVDDEHGETVCEDCGLVVEEDSVDRGPEWRAFDAAEKN--EKSRVGAPTTNTMHDKGLS 95
Query: 75 TMIGPGRGDASFDGFG---------MSKYQNR-RTMNSSDRALLNAIREINSMADRINLT 124
T I DA + G + K+ R RT +S +R L A+ EI+ MA + L
Sbjct: 96 TNIDWRNKDAYGNSLGSRQREKMQRLRKWNERFRTRDSKERNLKQALGEIDRMASAVGLP 155
Query: 125 KTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEI 184
+ + A+ ++++ D L GRS + +++AC+Y A RQ GVPR+ EI VS++ K EI
Sbjct: 156 TNVRETASVIYRRALDEDLLPGRSIEGVSTACVYAAARQAGVPRSLDEIADVSRVEKNEI 215
Query: 185 GRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPI 244
R ++ +++ L V ++ RF S L L + + A + + A E + G+SP+
Sbjct: 216 ARTYRYVVRELGLEVQPADPESYVPRFASGLDLSDEAEHRARALLQNAKEKGVHSGKSPV 275
Query: 245 SVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSY 282
+AAAA+Y A+ +++K +Q + D+A ++EVTIR Y
Sbjct: 276 GLAAAAVYAAALLTNEKTTQAAVSDVADISEVTIRNRY 313
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 48/78 (61%)
Query: 208 MSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEI 267
+ R S + LP V++ A+ I R+A++ D++PGRS V+ A +Y A++ + RS EI
Sbjct: 145 IDRMASAVGLPTNVRETASVIYRRALDEDLLPGRSIEGVSTACVYAAARQAGVPRSLDEI 204
Query: 268 GDIAGVAEVTIRQSYKLM 285
D++ V + I ++Y+ +
Sbjct: 205 ADVSRVEKNEIARTYRYV 222
>gi|448448980|ref|ZP_21591478.1| transcription factor TFIIB cyclin-related protein [Halorubrum
litoreum JCM 13561]
gi|445814072|gb|EMA64044.1| transcription factor TFIIB cyclin-related protein [Halorubrum
litoreum JCM 13561]
Length = 325
Score = 150 bits (380), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 99/278 (35%), Positives = 150/278 (53%), Gaps = 13/278 (4%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTF-SNEKSGVDPSRVGGPENPLLNGSDLS 74
L D G+ +C +CGLVV + ID G EWR F S EK SRVG P +++ LS
Sbjct: 37 LATDTEHGETVCVDCGLVVEEDEIDRGPEWRAFDSKEKDS--KSRVGAPTTNMMHDKGLS 94
Query: 75 TMIGPGRGDA---SFDGFGMSKYQNRRTMN-------SSDRALLNAIREINSMADRINLT 124
T IG DA S K Q RT N S +R L A+ EI+ MA + L
Sbjct: 95 TNIGWQDKDAYGKSLSSRQREKMQRLRTWNERFRTRDSKERNLKQALGEIDRMASALGLP 154
Query: 125 KTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEI 184
+ + A+ ++++ D L GRS + +++A LY A RQ G PR+ EI VS++ K EI
Sbjct: 155 DNVRETASVIYRRALDEDLLPGRSIEGVSTASLYAAARQAGTPRSLDEIAGVSRVEKDEI 214
Query: 185 GRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPI 244
R ++ +++ L+ + ++ RF S+L L + ++ A + A E I G+SP+
Sbjct: 215 ARTYRYVVRELKLEIQPADPESYVPRFASDLGLSDEAERRARSLLDTAKEQGIHSGKSPV 274
Query: 245 SVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSY 282
+AAAA+Y AS ++K +Q E+ ++A ++EVTIR Y
Sbjct: 275 GLAAAAVYAASLLVNEKVTQSEVSEVANISEVTIRNRY 312
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 49/78 (62%)
Query: 208 MSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEI 267
+ R S L LP+ V++ A+ I R+A++ D++PGRS V+ A++Y A++ + RS EI
Sbjct: 144 IDRMASALGLPDNVRETASVIYRRALDEDLLPGRSIEGVSTASLYAAARQAGTPRSLDEI 203
Query: 268 GDIAGVAEVTIRQSYKLM 285
++ V + I ++Y+ +
Sbjct: 204 AGVSRVEKDEIARTYRYV 221
>gi|448361954|ref|ZP_21550567.1| transcription factor TFIIB cyclin-like protein [Natrialba asiatica
DSM 12278]
gi|445649634|gb|ELZ02571.1| transcription factor TFIIB cyclin-like protein [Natrialba asiatica
DSM 12278]
Length = 329
Score = 150 bits (380), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 97/290 (33%), Positives = 156/290 (53%), Gaps = 13/290 (4%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTF-SNEKSGVDPSRVGGPENPLLNGSDLS 74
LI D + +C +CGLVV + ID G EWR F + EK + SRVG P +++ LS
Sbjct: 41 LITDDEHAETVCEDCGLVVEEDEIDRGPEWRAFDAAEKD--EKSRVGAPTTNMMHDQGLS 98
Query: 75 TMIGPGRGDA---SFDGFGMSKYQNRRTMN-------SSDRALLNAIREINSMADRINLT 124
T IG DA S K Q RT N S +R L A+ EI+ MA + L
Sbjct: 99 TNIGWQNKDAYGKSLSSRQRQKMQRLRTWNERFRTRDSKERNLKQALGEIDRMASALGLP 158
Query: 125 KTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEI 184
+ + + A+ ++++ + L GRS + +A++ LY A RQ G PR+ EI AVS++ K E+
Sbjct: 159 ENVRETASVIYRRALEEDLLPGRSIEGVATSSLYAAARQAGTPRSLDEISAVSRVDKMEL 218
Query: 185 GRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPI 244
R ++ I++ L V ++ RF S+L L + ++ A + A + + G+SP+
Sbjct: 219 TRTYRYIIRELGLEVKPADPEHYVPRFVSDLDLSDETERMARELLESARQEGVHSGKSPV 278
Query: 245 SVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKLFP 294
+AAA +Y A+ +++K +Q E+ ++A ++EVTIR YK + + P
Sbjct: 279 GLAAAGVYAAALLTNEKVTQNEVSEVASISEVTIRNRYKELLEASDTAAP 328
>gi|389847221|ref|YP_006349460.1| transcription initiation factor TFB [Haloferax mediterranei ATCC
33500]
gi|448614833|ref|ZP_21663861.1| transcription initiation factor TFB [Haloferax mediterranei ATCC
33500]
gi|388244527|gb|AFK19473.1| transcription initiation factor TFB [Haloferax mediterranei ATCC
33500]
gi|445752920|gb|EMA04339.1| transcription initiation factor TFB [Haloferax mediterranei ATCC
33500]
Length = 331
Score = 150 bits (380), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 96/281 (34%), Positives = 155/281 (55%), Gaps = 17/281 (6%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTF-SNEKSGVDPSRVGGPENPLLNGSDLS 74
L++D G+ +C ECGLVV D V+D G EWR F ++E+ SRVG P +++ LS
Sbjct: 43 LVQDDEHGETVCQECGLVVEDTVVDRGPEWRAFDASERDS--KSRVGAPTTKMMHDKGLS 100
Query: 75 TMIGPGRGDASFDGFGMSKYQNR------------RTMNSSDRALLNAIREINSMADRIN 122
T IG DA G +S Q RT +S +R L A+ EI+ MA +
Sbjct: 101 TNIGWQNKDAY--GKSLSPRQREQMQRLRTWNERFRTRDSKERNLKQALGEIDRMASALG 158
Query: 123 LTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKK 182
L + + + A+ ++++ + L GRS + +A+A LY A R PR+ E+ VS++ K
Sbjct: 159 LPENVRETASVIYRRALNDDLLPGRSIEGVATAALYGAARMADTPRSLDELEKVSRVDKM 218
Query: 183 EIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRS 242
E+ R ++ I++ L+ + ++ RF S L L + ++ A + R A E I G+S
Sbjct: 219 ELTRTYRYIVRELKLEIKPADPEQYVPRFASELDLSDEAERQARQLLRDAKETGIHSGKS 278
Query: 243 PISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
P+ +AAAA+Y A+ +++K +Q E+ +A ++EVTIR YK
Sbjct: 279 PVGLAAAAVYAAALLTNEKVTQSEVSKVADISEVTIRNRYK 319
>gi|289582455|ref|YP_003480921.1| transcription factor TFIIB cyclin-like protein [Natrialba magadii
ATCC 43099]
gi|448282123|ref|ZP_21473413.1| transcription factor TFIIB cyclin-like protein [Natrialba magadii
ATCC 43099]
gi|289532008|gb|ADD06359.1| Transcription factor TFIIB cyclin-related protein [Natrialba
magadii ATCC 43099]
gi|445577053|gb|ELY31498.1| transcription factor TFIIB cyclin-like protein [Natrialba magadii
ATCC 43099]
Length = 326
Score = 150 bits (380), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 96/281 (34%), Positives = 152/281 (54%), Gaps = 19/281 (6%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTF----SNEKSGVDPSRVGGPENPLLNGS 71
L+ D G+ +C +CGLVV + +D G EWR F NEKS RVG P ++
Sbjct: 38 LVVDDEHGETVCEDCGLVVEEDSVDRGPEWRAFDAAEKNEKS-----RVGAPTTNTMHDK 92
Query: 72 DLSTMIGPGRGDASFDGFG---------MSKYQNR-RTMNSSDRALLNAIREINSMADRI 121
LST I DA + G + K+ R RT +S +R L A+ EI+ MA +
Sbjct: 93 GLSTNIDWRNKDAYGNSLGSRQREKMQRLRKWNERFRTRDSKERNLKQALGEIDRMASAL 152
Query: 122 NLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISK 181
L + + A+ ++++ D L GRS + +++AC+Y A RQ GVPR+ EI VS++ K
Sbjct: 153 GLPTNVRETASVIYRRALDEDLLPGRSIEGVSTACVYAAARQAGVPRSLDEIADVSRVEK 212
Query: 182 KEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGR 241
EI R ++ +++ L V ++ RF S L L + + A + + A E + G+
Sbjct: 213 NEIARTYRYVVRELGLEVQPADPESYVPRFASGLDLSDEAEHRARALLQNAKEKGVHSGK 272
Query: 242 SPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSY 282
SP+ +AAAA+Y A+ +++K +Q + D+A ++EVTIR Y
Sbjct: 273 SPVGLAAAAVYAAALLTNEKTTQAAVSDVADISEVTIRNRY 313
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 48/78 (61%)
Query: 208 MSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEI 267
+ R S L LP V++ A+ I R+A++ D++PGRS V+ A +Y A++ + RS EI
Sbjct: 145 IDRMASALGLPTNVRETASVIYRRALDEDLLPGRSIEGVSTACVYAAARQAGVPRSLDEI 204
Query: 268 GDIAGVAEVTIRQSYKLM 285
D++ V + I ++Y+ +
Sbjct: 205 ADVSRVEKNEIARTYRYV 222
>gi|433639269|ref|YP_007285029.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Halovivax ruber XH-70]
gi|448377441|ref|ZP_21560137.1| Transcription factor TFIIB cyclin-related protein [Halovivax
asiaticus JCM 14624]
gi|433291073|gb|AGB16896.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Halovivax ruber XH-70]
gi|445655385|gb|ELZ08230.1| Transcription factor TFIIB cyclin-related protein [Halovivax
asiaticus JCM 14624]
Length = 326
Score = 150 bits (379), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 96/290 (33%), Positives = 161/290 (55%), Gaps = 14/290 (4%)
Query: 4 NKVCCYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTF-SNEKSGVDPSRVGG 62
++V C E L+ D G+ +C++CGLVV + +D G EWR F ++EK+ + SRVG
Sbjct: 27 DRVSCPE-CSGQLVADDEHGETVCADCGLVVAEDSVDRGPEWRAFDASEKN--EKSRVGA 83
Query: 63 PENPLLNGSDLSTMIGPGRGDASFDGFG---------MSKYQNR-RTMNSSDRALLNAIR 112
P ++ LST I DA + G + K+ R RT +S +R L A+
Sbjct: 84 PTTNTMHDKGLSTNIDWRNKDAYGNSLGSRQREKMQRLRKWNERFRTRDSKERNLKQALG 143
Query: 113 EINSMADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKE 172
EI+ MA + L + + A+ ++++ + L GRS + +++AC+Y A RQ GVPR+ E
Sbjct: 144 EIDRMASAVGLPTNVRETASVIYRRALEEDLLPGRSIEGVSTACVYAAARQAGVPRSLDE 203
Query: 173 ICAVSKISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKA 232
I VS++ K EI R ++ +++ L V ++ RF S L L + + A + + A
Sbjct: 204 IADVSRVEKNEIARTYRYVVRELGLEVQPADPESYVPRFASGLDLSDESEHRARSLLKNA 263
Query: 233 VELDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSY 282
E + G+SP+ +AAAA+Y A+ +++K +Q + ++A ++EVTIR Y
Sbjct: 264 KEKGVHSGKSPVGLAAAAVYAAALLTNEKTTQAAVSEVADISEVTIRNRY 313
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 48/78 (61%)
Query: 208 MSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEI 267
+ R S + LP V++ A+ I R+A+E D++PGRS V+ A +Y A++ + RS EI
Sbjct: 145 IDRMASAVGLPTNVRETASVIYRRALEEDLLPGRSIEGVSTACVYAAARQAGVPRSLDEI 204
Query: 268 GDIAGVAEVTIRQSYKLM 285
D++ V + I ++Y+ +
Sbjct: 205 ADVSRVEKNEIARTYRYV 222
>gi|435849538|ref|YP_007311726.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natronococcus occultus SP4]
gi|433675746|gb|AGB39936.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natronococcus occultus SP4]
Length = 318
Score = 150 bits (379), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 93/271 (34%), Positives = 150/271 (55%), Gaps = 12/271 (4%)
Query: 23 GDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLSTMIGPGRG 82
G++IC +CGLV+ + +ID G EWR F +++ SRVG P ++ L+T I
Sbjct: 41 GERICKDCGLVLEESMIDSGPEWRAFDHQERQ-QKSRVGAPTTQTMHDKGLTTQIDWKNE 99
Query: 83 DASFDGFG---------MSKYQNR-RTMNSSDRALLNAIREINSMADRINLTKTIVDRAN 132
DA + K+Q R RT ++ +R L A+ EI+ MA + + + + + +
Sbjct: 100 DAYGRSISSEKRSQMNRLRKWQTRIRTKDAGERNLQFALSEIDRMASALGVPRAVREVTS 159
Query: 133 NLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGRCFKLIL 192
++++ ++GRS + +A+A LY CRQEG+PR+ +EI VS+I + EI R ++ I
Sbjct: 160 VIYRRALQEDLIRGRSIEGVATAALYAGCRQEGIPRSLEEITEVSRIERIEISRTYRYIS 219
Query: 193 KALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIY 252
L + I ++ RF S L LP V+ A I + + ++ GR P AAAAIY
Sbjct: 220 NELGLELRPIDPKQYVPRFTSKLELPQEVETKANEIIDETAD-PLLSGRGPSGFAAAAIY 278
Query: 253 MASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
A+ ++KR+Q+E+ D+A V EVTIR Y+
Sbjct: 279 AAALLCNEKRTQREVADVAQVTEVTIRNRYQ 309
>gi|448355065|ref|ZP_21543819.1| transcription factor TFIIB cyclin-like protein [Natrialba
hulunbeirensis JCM 10989]
gi|448360186|ref|ZP_21548828.1| transcription factor TFIIB cyclin-like protein [Natrialba
chahannaoensis JCM 10990]
gi|445636409|gb|ELY89571.1| transcription factor TFIIB cyclin-like protein [Natrialba
hulunbeirensis JCM 10989]
gi|445640136|gb|ELY93226.1| transcription factor TFIIB cyclin-like protein [Natrialba
chahannaoensis JCM 10990]
Length = 326
Score = 150 bits (379), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 95/278 (34%), Positives = 154/278 (55%), Gaps = 13/278 (4%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTF-SNEKSGVDPSRVGGPENPLLNGSDLS 74
L+ D G+ +C +CGLVV + +D G EWR F + EK+ + SRVG P ++ LS
Sbjct: 38 LVVDDEHGETVCEDCGLVVEEDSVDRGPEWRAFDAAEKN--EKSRVGAPTTNTMHDKGLS 95
Query: 75 TMIGPGRGDASFDGFG---------MSKYQNR-RTMNSSDRALLNAIREINSMADRINLT 124
T I DA + G + K+ R RT +S +R L A+ EI+ MA + L
Sbjct: 96 TNIDWRNKDAYGNSLGSRQREKMQRLRKWNERFRTRDSKERNLKQALGEIDRMASALGLP 155
Query: 125 KTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEI 184
+ + A+ ++++ D L GRS + +++AC+Y A RQ GVPR+ EI VS++ K EI
Sbjct: 156 TNVRETASVIYRRALDEDLLPGRSIEGVSTACVYAAARQAGVPRSLDEIADVSRVEKNEI 215
Query: 185 GRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPI 244
R ++ +++ L V ++ RF S L L + + A + + A E + G+SP+
Sbjct: 216 ARTYRYVVRELGLEVQPADPESYVPRFASGLDLSDEAEHRARALLQNAKEKGVHSGKSPV 275
Query: 245 SVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSY 282
+AAAA+Y A+ +++K +Q + D+A ++EVTIR Y
Sbjct: 276 GLAAAAVYAAALLTNEKTTQAAVSDVADISEVTIRNRY 313
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 48/78 (61%)
Query: 208 MSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEI 267
+ R S L LP V++ A+ I R+A++ D++PGRS V+ A +Y A++ + RS EI
Sbjct: 145 IDRMASALGLPTNVRETASVIYRRALDEDLLPGRSIEGVSTACVYAAARQAGVPRSLDEI 204
Query: 268 GDIAGVAEVTIRQSYKLM 285
D++ V + I ++Y+ +
Sbjct: 205 ADVSRVEKNEIARTYRYV 222
>gi|433591588|ref|YP_007281084.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natrinema pellirubrum DSM
15624]
gi|433306368|gb|AGB32180.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natrinema pellirubrum DSM
15624]
Length = 341
Score = 150 bits (379), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 97/283 (34%), Positives = 156/283 (55%), Gaps = 17/283 (6%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTF-SNEKSGVDPSRVGGPENPLLNGSDLS 74
L+ D + +C++C LVV + ID G EWR F + EK + SRVG P +++ LS
Sbjct: 54 LVSDDGRAETVCTDCSLVVEEDEIDRGPEWRAFDAAEKD--EKSRVGAPTTNMMHDQGLS 111
Query: 75 TMIGPGRGDASFDGFGMSKYQNR------------RTMNSSDRALLNAIREINSMADRIN 122
T IG DA G +S Q RT NS +R L A+ EI+ MA +
Sbjct: 112 TNIGWQDKDAY--GRSLSSRQREKMQRLRTWNERFRTRNSKERNLKQALGEIDRMASALG 169
Query: 123 LTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKK 182
L T+ + ++ ++++ + L GRS + +A+A LY A RQ G PR+ EI AVS++ K
Sbjct: 170 LPDTVRETSSVIYRRALEEDLLPGRSIEGVATASLYAAARQAGTPRSLDEISAVSRVEKA 229
Query: 183 EIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRS 242
EI R ++ +++ L V ++ RF S+L L + ++ A + A E + G+S
Sbjct: 230 EIARTYRYVVRELGLEVQPADPESYVPRFASDLDLADETERRAHDLLSTAKERGVHSGKS 289
Query: 243 PISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLM 285
P+ +AAAA+Y A+ +++K +Q ++ D+A ++EVTIR YK +
Sbjct: 290 PVGLAAAAVYAAALLTNEKVTQNDVSDVASISEVTIRNRYKEL 332
>gi|448352225|ref|ZP_21541016.1| transcription factor TFIIB cyclin-like protein [Natrialba
taiwanensis DSM 12281]
gi|448365467|ref|ZP_21553847.1| transcription factor TFIIB cyclin-like protein [Natrialba aegyptia
DSM 13077]
gi|445631605|gb|ELY84834.1| transcription factor TFIIB cyclin-like protein [Natrialba
taiwanensis DSM 12281]
gi|445655006|gb|ELZ07853.1| transcription factor TFIIB cyclin-like protein [Natrialba aegyptia
DSM 13077]
Length = 317
Score = 150 bits (379), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 93/278 (33%), Positives = 152/278 (54%), Gaps = 11/278 (3%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLST 75
+I D G+++C ECGLV+ + ID G EWR F N + + SRVG P ++ L+T
Sbjct: 29 IIHDPDRGERVCGECGLVLTEDPIDYGPEWRAF-NAQEHDELSRVGAPLTQSMHDRGLTT 87
Query: 76 MIGPGRGDA-----SFDGFG----MSKYQNR-RTMNSSDRALLNAIREINSMADRINLTK 125
I DA S D G + +Q R RT N+ +R L A+ EI+ M + + K
Sbjct: 88 TIDWRNKDANGHSMSADKHGQLHRLRVWQERIRTKNAGERNLKYALSEIDRMVSALGVPK 147
Query: 126 TIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIG 185
+ + A+ +++Q + ++GRS + +A++ LY ACR+EG+PR+ +E+ +VS++ ++EIG
Sbjct: 148 PVKETASVIYRQALEQDLIRGRSIEGVATSALYTACRKEGIPRSLEEVTSVSRVDQREIG 207
Query: 186 RCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPIS 245
R ++ I L+ +++ F+ RFCS L + V+ A I + E + G+SP
Sbjct: 208 RTYRYIADELDINLEPTNPRQFVPRFCSELDVSKAVETKAVDIIEQTTEQGLHSGKSPTG 267
Query: 246 VAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
AAAAIY A + Q+ + D A VT+R Y+
Sbjct: 268 FAAAAIYAAGLLCDETIPQRAVADTAQTTVVTVRNRYR 305
>gi|297818592|ref|XP_002877179.1| transcription factor IIB family protein [Arabidopsis lyrata subsp.
lyrata]
gi|297323017|gb|EFH53438.1| transcription factor IIB family protein [Arabidopsis lyrata subsp.
lyrata]
Length = 336
Score = 150 bits (379), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 106/304 (34%), Positives = 158/304 (51%), Gaps = 22/304 (7%)
Query: 19 DYRAGDQICSECGLVVGDRVIDVGSEWRTFSNE--KSGVDPSRVGGPENPLLNGSDLSTM 76
D+ +GD ICSECGLV+ +I+ EWRTF+++ +S DP+RVG P NPLL +L T+
Sbjct: 18 DHSSGDTICSECGLVLEAHIIEYSEEWRTFASDDNRSDRDPNRVGAPTNPLLKSGNLVTV 77
Query: 77 IGPGRGDASF-----DGFGMSKYQNRRTMNSSDRALLNAIREINSMADRINLTKTIVDRA 131
I + + S D + + QN + N + + A EI M D + L + RA
Sbjct: 78 IEKPKENVSSVVSKDDISTLCRTQN-QVKNHEEDLIKKAFEEIQRMTDALYLNIAVNSRA 136
Query: 132 NNLFKQVHDGKNLK---GRSNDAIASACLYIACRQEGVPRTFKEICAVSK-ISKKEIGRC 187
+ + N K G+ A+ +A + +ACR+ + RT KEI V+ + K+I +
Sbjct: 137 CEIVSKFGGHANTKLRRGKKLYAVCAASVSMACRELKLSRTLKEIAMVANGVELKDIRKS 196
Query: 188 FKLILKALET---SVD----LITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPG 240
+I + LE+ SV +I TG+ + RFCS L + A KA DI
Sbjct: 197 SMVIKRVLESDQASVSAAQAIINTGELVRRFCSKLDISQREIMAIREAVEKAENFDI--R 254
Query: 241 RSPISVAAAAIYMASQAS-SDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKLFPQDFVF 299
R+P SV AA I+M S S +++R +EIG +A V E TI+ S K MYP+A K+ P +
Sbjct: 255 RNPKSVLAAIIFMISHISQTNRRPIREIGIVAEVVENTIKNSVKDMYPYALKIIPNWYAC 314
Query: 300 HTPI 303
I
Sbjct: 315 EAEI 318
>gi|448366242|ref|ZP_21554496.1| transcription factor TFIIB cyclin-like protein [Natrialba aegyptia
DSM 13077]
gi|445654851|gb|ELZ07702.1| transcription factor TFIIB cyclin-like protein [Natrialba aegyptia
DSM 13077]
Length = 326
Score = 150 bits (379), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 95/278 (34%), Positives = 154/278 (55%), Gaps = 13/278 (4%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTF-SNEKSGVDPSRVGGPENPLLNGSDLS 74
L+ D G+ +C +CGLVV + +D G EWR F + EK+ + SRVG P ++ LS
Sbjct: 38 LVVDDEHGETVCEDCGLVVEEDSVDRGPEWRAFDAAEKN--EKSRVGAPTTNTMHDKGLS 95
Query: 75 TMIGPGRGDASFDGFG---------MSKYQNR-RTMNSSDRALLNAIREINSMADRINLT 124
T I DA + G + K+ R RT +S +R L A+ EI+ MA + L
Sbjct: 96 TNIDWRNKDAYGNSLGSRQREKMQRLRKWNERFRTRDSKERNLKQALGEIDRMASALGLP 155
Query: 125 KTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEI 184
+ + A+ ++++ D L GRS + +++AC+Y A RQ GVPR+ EI VS++ K EI
Sbjct: 156 TNVRETASVIYRRALDEDLLPGRSIEGVSTACVYAAARQAGVPRSLDEIADVSRVEKNEI 215
Query: 185 GRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPI 244
R ++ +++ L V ++ RF S L L + + A + + A E + G+SP+
Sbjct: 216 ARTYRYVVRELGLEVQPADPESYVPRFASGLDLSDEAEHRARALLQNAKEKGVHSGKSPV 275
Query: 245 SVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSY 282
+AAAA+Y A+ +++K +Q + D+A ++EVTIR Y
Sbjct: 276 GLAAAAVYAAALLTNEKTTQAAVSDVADISEVTIRNRY 313
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 48/78 (61%)
Query: 208 MSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEI 267
+ R S L LP V++ A+ I R+A++ D++PGRS V+ A +Y A++ + RS EI
Sbjct: 145 IDRMASALGLPTNVRETASVIYRRALDEDLLPGRSIEGVSTACVYAAARQAGVPRSLDEI 204
Query: 268 GDIAGVAEVTIRQSYKLM 285
D++ V + I ++Y+ +
Sbjct: 205 ADVSRVEKNEIARTYRYV 222
>gi|448363001|ref|ZP_21551605.1| transcription factor TFIIB cyclin-like protein [Natrialba asiatica
DSM 12278]
gi|445647623|gb|ELZ00597.1| transcription factor TFIIB cyclin-like protein [Natrialba asiatica
DSM 12278]
Length = 317
Score = 150 bits (379), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 93/278 (33%), Positives = 152/278 (54%), Gaps = 11/278 (3%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLST 75
+I D G+++C ECGLV+ + ID G EWR F N + + SRVG P ++ L+T
Sbjct: 29 IIHDPDRGERVCGECGLVLTEDPIDYGPEWRAF-NAQEHDELSRVGAPLTQSMHDRGLTT 87
Query: 76 MIGPGRGDA-----SFDGFG----MSKYQNR-RTMNSSDRALLNAIREINSMADRINLTK 125
I DA S D G + +Q R RT N+ +R L A+ EI+ M + + K
Sbjct: 88 TIDWRNKDANGHSMSADKHGQLHRLRVWQERIRTKNAGERNLKYALSEIDRMVSALGVPK 147
Query: 126 TIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIG 185
+ + A+ +++Q + ++GRS + +A++ LY ACR+EG+PR+ +E+ +VS++ ++EIG
Sbjct: 148 PVKETASVIYRQALEQDLIRGRSIEGVATSALYTACRKEGIPRSLEEVTSVSRVDQREIG 207
Query: 186 RCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPIS 245
R ++ I L+ +++ F+ RFCS L + V+ A I + E + G+SP
Sbjct: 208 RTYRYIADELDINLEPTNPRQFVPRFCSELDVSKAVETKAVDIIEQTTEQGLHSGKSPTG 267
Query: 246 VAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
AAAAIY A + Q+ + D A VT+R Y+
Sbjct: 268 FAAAAIYAAGLLCDETIPQRAVADTAQTTVVTVRNRYR 305
>gi|448369498|ref|ZP_21556050.1| transcription factor TFIIB cyclin-like protein [Natrialba aegyptia
DSM 13077]
gi|445650673|gb|ELZ03589.1| transcription factor TFIIB cyclin-like protein [Natrialba aegyptia
DSM 13077]
Length = 329
Score = 150 bits (379), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 97/290 (33%), Positives = 156/290 (53%), Gaps = 13/290 (4%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTF-SNEKSGVDPSRVGGPENPLLNGSDLS 74
LI D + +C +CGLVV + ID G EWR F + EK + SRVG P +++ LS
Sbjct: 41 LIADDEHAETVCEDCGLVVEEDEIDRGPEWRAFDAAEKD--EKSRVGAPTTNMMHDQGLS 98
Query: 75 TMIGPGRGDA---SFDGFGMSKYQNRRTMN-------SSDRALLNAIREINSMADRINLT 124
T IG DA S K Q RT N S +R L A+ EI+ MA + L
Sbjct: 99 TNIGWQDKDAYGKSLSSRQRQKMQRLRTWNERFRTRDSKERNLKQALGEIDRMASALGLP 158
Query: 125 KTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEI 184
+ + + A+ ++++ + L GRS + +A++ LY A RQ G PR+ EI AVS++ K E+
Sbjct: 159 ENVRETASVIYRRALEEDLLPGRSIEGVATSSLYAAARQAGTPRSLDEISAVSRVDKMEL 218
Query: 185 GRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPI 244
R ++ I++ L V ++ RF S+L L + ++ A + A + + G+SP+
Sbjct: 219 TRTYRYIIRELGLEVKPADPEHYVPRFVSDLDLSDETERMARELLESARQEGVHSGKSPV 278
Query: 245 SVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKLFP 294
+AAA +Y A+ +++K +Q E+ ++A ++EVTIR YK + + P
Sbjct: 279 GLAAAGVYAAALLTNEKVTQNEVSEVASISEVTIRNRYKELLEASDTAAP 328
>gi|300711996|ref|YP_003737810.1| transcription factor TFIIB cyclin-like protein [Halalkalicoccus
jeotgali B3]
gi|448295686|ref|ZP_21485750.1| transcription factor TFIIB cyclin-like protein [Halalkalicoccus
jeotgali B3]
gi|299125679|gb|ADJ16018.1| Transcription factor TFIIB cyclin-related protein [Halalkalicoccus
jeotgali B3]
gi|445583785|gb|ELY38114.1| transcription factor TFIIB cyclin-like protein [Halalkalicoccus
jeotgali B3]
Length = 320
Score = 150 bits (378), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 95/278 (34%), Positives = 152/278 (54%), Gaps = 13/278 (4%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTF-SNEKSGVDPSRVGGPENPLLNGSDLS 74
LI D G+ +C++CGLVV + +D G EWR F S EK SRVG P ++ LS
Sbjct: 32 LISDDEHGETVCADCGLVVAEDSVDRGPEWRAFDSREKD--QKSRVGAPTTNTMHDKGLS 89
Query: 75 TMIGPGRGDASFDGFG---------MSKYQNR-RTMNSSDRALLNAIREINSMADRINLT 124
T I DA + G + K+ R RT +S +R L A+ EI+ MA + L
Sbjct: 90 TNIDWRNKDAYGNSLGSRQRQKMQRLRKWNERFRTRDSKERNLKQALGEIDRMASALGLP 149
Query: 125 KTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEI 184
+ + A+ ++++ + L GRS + +A+A +Y A RQ GVPR+ EI VS++ K E+
Sbjct: 150 DNVRETASVIYRRALNEDLLPGRSIEGVATASVYAAARQAGVPRSLDEISEVSRVEKSEV 209
Query: 185 GRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPI 244
R ++ +++ L V ++ RF S L L + + A + R A E + G+SP+
Sbjct: 210 ARTYRYVVRELGLEVQPADPESYVPRFASGLELSDEAEHRARQLLRNAKEKGVHSGKSPV 269
Query: 245 SVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSY 282
+AAAA+Y A+ +++K +Q + ++A ++EVTIR Y
Sbjct: 270 GLAAAAVYAAALLTNEKTTQAAVSEVADISEVTIRNRY 307
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 49/78 (62%)
Query: 208 MSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEI 267
+ R S L LP+ V++ A+ I R+A+ D++PGRS VA A++Y A++ + RS EI
Sbjct: 139 IDRMASALGLPDNVRETASVIYRRALNEDLLPGRSIEGVATASVYAAARQAGVPRSLDEI 198
Query: 268 GDIAGVAEVTIRQSYKLM 285
+++ V + + ++Y+ +
Sbjct: 199 SEVSRVEKSEVARTYRYV 216
>gi|257052263|ref|YP_003130096.1| Transcription factor TFIIB cyclin-related [Halorhabdus utahensis
DSM 12940]
gi|256691026|gb|ACV11363.1| Transcription factor TFIIB cyclin-related [Halorhabdus utahensis
DSM 12940]
Length = 323
Score = 150 bits (378), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 96/280 (34%), Positives = 152/280 (54%), Gaps = 11/280 (3%)
Query: 13 DAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSD 72
D LI D G+ +C CGLVV + ID G EWR F + K SRVG P +++
Sbjct: 32 DGKLISDTERGETVCQGCGLVVEEDEIDPGPEWRAF-DAKEKDQKSRVGAPTTNMMHDKG 90
Query: 73 LSTMIGPGRGDASFDGFG---------MSKYQNR-RTMNSSDRALLNAIREINSMADRIN 122
LST I DA + G + K+ R RT +S +R L A+ EI+ MA +
Sbjct: 91 LSTNIDWRDKDAYGNSLGSRQREKMQRLRKWNERFRTRDSKERNLKQALGEIDRMASALG 150
Query: 123 LTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKK 182
L + + + A+ ++++ D L GRS + +++A +Y A RQ GVPR+ E+ VS++ K
Sbjct: 151 LPENVRETASVIYRRALDEDLLPGRSIEGVSTASVYAAARQAGVPRSLDELTDVSRVEKD 210
Query: 183 EIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRS 242
EI R ++ +++ L V ++ RF S+L L ++ A + A E + G+S
Sbjct: 211 EIARTYRYVVRELGLEVRPADPESYVPRFTSDLELSEEAERRARELLANAKEEGVHSGKS 270
Query: 243 PISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSY 282
P+ +AAAAIY AS +++K +Q + ++A ++EVTIR Y
Sbjct: 271 PVGLAAAAIYAASLLTNEKTTQAAVSEVADISEVTIRNRY 310
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 49/78 (62%)
Query: 208 MSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEI 267
+ R S L LP V++ A+ I R+A++ D++PGRS V+ A++Y A++ + RS E+
Sbjct: 142 IDRMASALGLPENVRETASVIYRRALDEDLLPGRSIEGVSTASVYAAARQAGVPRSLDEL 201
Query: 268 GDIAGVAEVTIRQSYKLM 285
D++ V + I ++Y+ +
Sbjct: 202 TDVSRVEKDEIARTYRYV 219
>gi|407462988|ref|YP_006774305.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus koreensis AR1]
gi|407046610|gb|AFS81363.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus koreensis AR1]
Length = 290
Score = 150 bits (378), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 79/278 (28%), Positives = 155/278 (55%), Gaps = 11/278 (3%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLST 75
+I D G++ C +CG V+ + + G EWR+F+ E G DP+R G P + ++ LST
Sbjct: 1 MISDNETGERFCDKCGFVIRETLQSSGPEWRSFAKE-GGTDPTRTGAPTSLTMHDRGLST 59
Query: 76 MIGPGRGDASFDGFGMS---------KYQNR-RTMNSSDRALLNAIREINSMADRINLTK 125
+I DA+ S + +R + +S+D+ L A+ +++ + D+++L+
Sbjct: 60 VISQSNRDATGKPLSTSMKSTIERLRTWDSRSKVTSSADKNLRQALGQLSVLKDKLSLSD 119
Query: 126 TIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIG 185
++ ++A+ ++++ + +KGRS A+ +A +Y ACR PRT K++ I KK+I
Sbjct: 120 SVNEKASYIYRKALENGLVKGRSISALIAASIYAACRDTETPRTLKDVADAGNIKKKDIS 179
Query: 186 RCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPIS 245
RC++++ LE + ++ ++R S L + ++ A + + A E + G+ P+
Sbjct: 180 RCYRILHYELELKMPVVNPIQCIARISSKLRITEKSKRYAIKVLQVAQEHEESAGKDPMG 239
Query: 246 VAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
+AAAA+Y+A +++ +Q+++ + + V EVTIR YK
Sbjct: 240 IAAAALYLACVKNNEYVTQRDVAEASNVTEVTIRNRYK 277
Score = 47.0 bits (110), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 47/79 (59%)
Query: 208 MSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEI 267
+S LSL + V + A++I RKA+E +V GRS ++ AA+IY A + + R+ K++
Sbjct: 108 LSVLKDKLSLSDSVNEKASYIYRKALENGLVKGRSISALIAASIYAACRDTETPRTLKDV 167
Query: 268 GDIAGVAEVTIRQSYKLMY 286
D + + I + Y++++
Sbjct: 168 ADAGNIKKKDISRCYRILH 186
>gi|125585246|gb|EAZ25910.1| hypothetical protein OsJ_09753 [Oryza sativa Japonica Group]
Length = 309
Score = 150 bits (378), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 108/308 (35%), Positives = 160/308 (51%), Gaps = 25/308 (8%)
Query: 4 NKVC-CYE-HPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGV--DPSR 59
N+ C C E H ++ D+ GD IC+EC LV+ +R ID SEWRTFS+ SG DP+R
Sbjct: 7 NEQCYCPECHRTTVVVVDHATGDTICTECALVLEERYIDETSEWRTFSDAGSGEDRDPNR 66
Query: 60 VGGPENPLLNGSDLSTMIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMAD 119
VGG +P L+ ++L T++ P + A + + + D +L A R I+ MAD
Sbjct: 67 VGGCSDPFLSHAELGTVVAPAKRQAK--DTASPPHVRVDSKSGQDSSLAVAFRAISDMAD 124
Query: 120 RINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACR--QEGVPRTFKEICAVS 177
R+ L TI DRA LFK++ + K N R PRT KE+ +V
Sbjct: 125 RLQLVATIRDRAKELFKKMEEAKLCARVRNRRRPRTRPASTSRAATRATPRTLKELASVM 184
Query: 178 K--ISKKEIGRCFKLILKAL------ETSVDLITTGDFMSRFCSNLSL--PNM--VQKAA 225
+ KKEIGR ++I + L + ++ D+MSRF S L + P + Q+AA
Sbjct: 185 RDCQDKKEIGRMERIIRRHLGEEAGTAMEMGVVRAADYMSRFGSRLGMGKPEVREAQRAA 244
Query: 226 THIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLM 285
+ K LD+ R+P S+AAA IYM Q + + S +++ +GVAE TI+++ K +
Sbjct: 245 QTLEDK---LDV--RRNPESIAAAIIYMVVQRAGAQTSARDVSKASGVAEATIKEACKEL 299
Query: 286 YPHASKLF 293
H LF
Sbjct: 300 SQHEELLF 307
>gi|336254668|ref|YP_004597775.1| transcription initiation factor IIB [Halopiger xanaduensis SH-6]
gi|335338657|gb|AEH37896.1| Transcription initiation factor IIB [Halopiger xanaduensis SH-6]
Length = 325
Score = 150 bits (378), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 95/278 (34%), Positives = 154/278 (55%), Gaps = 13/278 (4%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTF-SNEKSGVDPSRVGGPENPLLNGSDLS 74
L+ D + +C +CGLVV + ID G EWR F + EK + SRVG P +++ LS
Sbjct: 38 LVSDAEHAETVCDDCGLVVDEGEIDRGPEWRAFDAAEKD--EKSRVGAPTTNMMHDQGLS 95
Query: 75 TMIGPGRGDA---SFDGFGMSKYQNRRTMN-------SSDRALLNAIREINSMADRINLT 124
T IG DA S K Q RT N S +R L A+ EI+ MA + L
Sbjct: 96 TNIGWQDKDAYGRSLSSRQRQKMQRLRTWNERFRTRDSKERNLKQALGEIDRMASALGLP 155
Query: 125 KTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEI 184
+ + + A+ ++++ + L GRS + +++A LY A RQ G PR+ EI AVS++ K EI
Sbjct: 156 ENVRETASVIYRRALEEDLLPGRSIEGVSTASLYAAARQAGTPRSLDEIDAVSRVEKDEI 215
Query: 185 GRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPI 244
R ++ +++ L V ++ RF S+L LP+ ++ A + + A + I G+SP+
Sbjct: 216 ARTYRYVIRELGLEVQPADPESYVPRFASDLDLPDETERRARQLLKTAKDSGIHSGKSPV 275
Query: 245 SVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSY 282
+AAAA+Y + +++K +Q ++ ++A ++EVTIR Y
Sbjct: 276 GLAAAAVYAGALLTNEKVTQNDVSEVANISEVTIRNRY 313
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 48/78 (61%)
Query: 208 MSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEI 267
+ R S L LP V++ A+ I R+A+E D++PGRS V+ A++Y A++ + RS EI
Sbjct: 145 IDRMASALGLPENVRETASVIYRRALEEDLLPGRSIEGVSTASLYAAARQAGTPRSLDEI 204
Query: 268 GDIAGVAEVTIRQSYKLM 285
++ V + I ++Y+ +
Sbjct: 205 DAVSRVEKDEIARTYRYV 222
>gi|297818608|ref|XP_002877187.1| transcription factor IIB family protein [Arabidopsis lyrata subsp.
lyrata]
gi|297323025|gb|EFH53446.1| transcription factor IIB family protein [Arabidopsis lyrata subsp.
lyrata]
Length = 336
Score = 150 bits (378), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 106/304 (34%), Positives = 160/304 (52%), Gaps = 22/304 (7%)
Query: 19 DYRAGDQICSECGLVVGDRVIDVGSEWRTFSNE--KSGVDPSRVGGPENPLLNGSDLSTM 76
D+ +GD ICSECGLV+ +I+ EWRTF+++ +S DP+RVG P NPLL DL T+
Sbjct: 18 DHSSGDTICSECGLVLEAHIIEYSEEWRTFASDDNRSDRDPNRVGAPTNPLLKSGDLVTV 77
Query: 77 IGPGRGDASF-----DGFGMSKYQNRRTMNSSDRALLNAIREINSMADRINLTKTIVDRA 131
I + + S D + + QN + N + + A EI + D + L + RA
Sbjct: 78 IEKPKENISSVVSKDDLSTLCRAQN-QLKNHEEDLIKKAFEEIQRITDALYLDIVVHSRA 136
Query: 132 NNLFKQVHDGKNLK---GRSNDAIASACLYIACRQEGVPRTFKEICAVSK-ISKKEIGRC 187
+ + N K G++ A+ +A + +ACR+ + RT KEI V+ + K+I +
Sbjct: 137 CEIVSKFGGHANTKLRRGKTLYAVCAASVSMACRELKLSRTLKEIAMVANGVELKDIRKS 196
Query: 188 FKLILKALET---SVD----LITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPG 240
+I + LE+ SV +I TG+ + RFCS L + A KA DI
Sbjct: 197 SMVIKRVLESDQASVSAAQAIINTGELVRRFCSKLDISQREIMAIREAVEKAENFDI--R 254
Query: 241 RSPISVAAAAIYMASQAS-SDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKLFPQDFVF 299
R+P SV AA I+M S S +++R +EIG +A V E TI+ S K MYP+A K+ P +
Sbjct: 255 RNPKSVLAAIIFMISHISQTNRRPIREIGIVAEVVENTIKNSVKDMYPYALKIIPNWYAC 314
Query: 300 HTPI 303
+ I
Sbjct: 315 ESDI 318
>gi|448321090|ref|ZP_21510571.1| transcription initiation factor IIB [Natronococcus amylolyticus DSM
10524]
gi|445604490|gb|ELY58438.1| transcription initiation factor IIB [Natronococcus amylolyticus DSM
10524]
Length = 324
Score = 150 bits (378), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 96/278 (34%), Positives = 153/278 (55%), Gaps = 13/278 (4%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTF-SNEKSGVDPSRVGGPENPLLNGSDLS 74
L D + +C +CGLVV + ID G EWR F S+EK + SRVG P +++ LS
Sbjct: 37 LRSDSEHAETVCQDCGLVVDEGEIDRGPEWRAFDSSEKD--EKSRVGAPTTNMMHDQGLS 94
Query: 75 TMIGPGRGDA---SFDGFGMSKYQNRRTMN-------SSDRALLNAIREINSMADRINLT 124
T IG DA S K Q RT N S +R L A+ EI+ MA + L
Sbjct: 95 TNIGWQDKDAYGRSLSSRQRQKMQRLRTWNERFRTRDSKERNLKQALGEIDRMASALGLP 154
Query: 125 KTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEI 184
+ + + A+ ++++ + L GRS + +A++ LY A RQ G PR+ EI AVS++ K EI
Sbjct: 155 ENVRETASVIYRRALEEDLLPGRSIEGVATSALYAAARQAGTPRSLDEIAAVSRVEKDEI 214
Query: 185 GRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPI 244
R ++ +++ L V ++ RF S L L + ++ A + + A E + G+SP+
Sbjct: 215 ARTYRYVIRELGLEVQPADPESYVPRFASELELSDETERRARQLLQTAKEEGVHSGKSPV 274
Query: 245 SVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSY 282
+AAAA+Y A+ +++K +Q ++ ++A ++EVTIR Y
Sbjct: 275 GLAAAAVYAAALLTNEKVTQNDVSEVASISEVTIRNRY 312
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 48/78 (61%)
Query: 208 MSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEI 267
+ R S L LP V++ A+ I R+A+E D++PGRS VA +A+Y A++ + RS EI
Sbjct: 144 IDRMASALGLPENVRETASVIYRRALEEDLLPGRSIEGVATSALYAAARQAGTPRSLDEI 203
Query: 268 GDIAGVAEVTIRQSYKLM 285
++ V + I ++Y+ +
Sbjct: 204 AAVSRVEKDEIARTYRYV 221
>gi|435846710|ref|YP_007308960.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natronococcus occultus SP4]
gi|433672978|gb|AGB37170.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natronococcus occultus SP4]
Length = 325
Score = 150 bits (378), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 98/290 (33%), Positives = 157/290 (54%), Gaps = 13/290 (4%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTF-SNEKSGVDPSRVGGPENPLLNGSDLS 74
LI D + +C +CGLVV + ID G EWR F + EK + SRVG P +++ LS
Sbjct: 37 LISDTEHAETVCQDCGLVVEEDEIDRGPEWRAFDAAEKD--EKSRVGAPTTNMMHDQGLS 94
Query: 75 TMIGPGRGDA---SFDGFGMSKYQNRRTMN-------SSDRALLNAIREINSMADRINLT 124
T IG DA S K Q RT N S +R L A+ EI+ MA + L
Sbjct: 95 TNIGWQDKDAYGRSLSSRQRQKMQRLRTWNERFRTRDSKERNLKQALGEIDRMASALGLP 154
Query: 125 KTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEI 184
+ + + A+ ++++ + L GRS + +A++ LY A RQ G PR+ EI AVS++ K E+
Sbjct: 155 ENVRETASVIYRRALEEDLLPGRSIEGVATSSLYAAARQAGTPRSLDEISAVSRVDKMEL 214
Query: 185 GRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPI 244
R ++ I++ L V ++ RF S+L L + ++ A + A E + G+SP+
Sbjct: 215 TRTYRYIIRELGLEVKPADPEHYVPRFVSDLDLSDETERMARELLDSAREEGVHSGKSPV 274
Query: 245 SVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKLFP 294
+AAAA+Y A+ +++K +Q ++ ++A ++EVTIR YK + + P
Sbjct: 275 GLAAAAVYAAALLTNEKVTQNDVSEVASISEVTIRNRYKELLEASDSAAP 324
>gi|335436571|ref|ZP_08559364.1| Transcription factor TFIIB cyclin-related protein [Halorhabdus
tiamatea SARL4B]
gi|334897534|gb|EGM35665.1| Transcription factor TFIIB cyclin-related protein [Halorhabdus
tiamatea SARL4B]
Length = 323
Score = 150 bits (378), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 97/277 (35%), Positives = 150/277 (54%), Gaps = 11/277 (3%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLST 75
L+ D G+ +C+ECGLVV + ID G EWR F + K SRVG P +++ LST
Sbjct: 35 LVTDSERGETVCAECGLVVEEDEIDPGPEWRAF-DAKEKDQKSRVGAPTTNMMHDKGLST 93
Query: 76 MIGPGRGDA---SFDGFGMSKYQNRRTMN-------SSDRALLNAIREINSMADRINLTK 125
IG DA S K Q RT N S +R L A+ EI+ MA + L +
Sbjct: 94 NIGWQNKDAYGNSLSSRQREKMQRLRTWNERFRTRDSKERNLKQALGEIDRMASALGLPE 153
Query: 126 TIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIG 185
+ + A+ ++++ D L GRS + +++A LY A RQ G PR+ EI VS++ K E+
Sbjct: 154 NVRETASVIYRRALDENLLPGRSIEGVSTASLYAAARQAGNPRSLDEIDNVSRVEKDEVA 213
Query: 186 RCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPIS 245
R ++ +++ L V ++ RF S+L L ++ A + A + G+SP+
Sbjct: 214 RTYRYVVRELNLEVKPADPTSYVPRFASDLDLSEEAERHARDLLENAKREGVHSGKSPVG 273
Query: 246 VAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSY 282
+AAAAIY AS +++K +Q E+ ++A ++EVTIR Y
Sbjct: 274 LAAAAIYAASLLANEKVTQNEVSEVANISEVTIRNRY 310
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 57/96 (59%), Gaps = 1/96 (1%)
Query: 208 MSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEI 267
+ R S L LP V++ A+ I R+A++ +++PGRS V+ A++Y A++ + + RS EI
Sbjct: 142 IDRMASALGLPENVRETASVIYRRALDENLLPGRSIEGVSTASLYAAARQAGNPRSLDEI 201
Query: 268 GDIAGVAEVTIRQSYKLMYPHAS-KLFPQDFVFHTP 302
+++ V + + ++Y+ + + ++ P D + P
Sbjct: 202 DNVSRVEKDEVARTYRYVVRELNLEVKPADPTSYVP 237
>gi|448319021|ref|ZP_21508530.1| Transcription factor TFIIB cyclin-related protein [Natronococcus
jeotgali DSM 18795]
gi|445597140|gb|ELY51217.1| Transcription factor TFIIB cyclin-related protein [Natronococcus
jeotgali DSM 18795]
Length = 326
Score = 150 bits (378), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 94/278 (33%), Positives = 154/278 (55%), Gaps = 13/278 (4%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTF-SNEKSGVDPSRVGGPENPLLNGSDLS 74
L+ D G+ +C +CGLVV + +D G EWR F + EK+ + SRVG P ++ LS
Sbjct: 38 LVVDDEHGETVCEDCGLVVEEDSVDRGPEWRAFDATEKN--EKSRVGAPTTNTMHDKGLS 95
Query: 75 TMIGPGRGDASFDGFG---------MSKYQNR-RTMNSSDRALLNAIREINSMADRINLT 124
T I DA + G + K+ R RT +S +R L A+ EI+ MA + L
Sbjct: 96 TNIDWRNKDAYGNSLGSRQREKMQRLRKWNERFRTRDSKERNLKQALGEIDRMASALGLP 155
Query: 125 KTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEI 184
+ + A+ ++++ + L GRS + +++AC+Y A RQ GVPR+ EI VS++ K EI
Sbjct: 156 TNVRETASVIYRRALEEDLLPGRSIEGVSTACVYAAARQAGVPRSLDEIADVSRVEKNEI 215
Query: 185 GRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPI 244
R ++ +++ L V ++ RF S L L + + A + + A E + G+SP+
Sbjct: 216 ARTYRYVVRELGLEVQPADPESYVPRFASGLELSDEAEHRARALLQNAKEKGVHSGKSPV 275
Query: 245 SVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSY 282
+AAAA+Y A+ +++K +Q + D+A ++EVTIR Y
Sbjct: 276 GLAAAAVYAAALLTNEKTTQAAVSDVADISEVTIRNRY 313
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 48/78 (61%)
Query: 208 MSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEI 267
+ R S L LP V++ A+ I R+A+E D++PGRS V+ A +Y A++ + RS EI
Sbjct: 145 IDRMASALGLPTNVRETASVIYRRALEEDLLPGRSIEGVSTACVYAAARQAGVPRSLDEI 204
Query: 268 GDIAGVAEVTIRQSYKLM 285
D++ V + I ++Y+ +
Sbjct: 205 ADVSRVEKNEIARTYRYV 222
>gi|171185160|ref|YP_001794079.1| transcription initiation factor IIB [Pyrobaculum neutrophilum
V24Sta]
gi|226703639|sp|B1YCX0.1|TF2B_THENV RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|170934372|gb|ACB39633.1| Transcription factor TFIIB cyclin-related [Pyrobaculum neutrophilum
V24Sta]
Length = 333
Score = 150 bits (378), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 91/278 (32%), Positives = 155/278 (55%), Gaps = 12/278 (4%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLST 75
I +Y G+ +C CG VV ++++D+G EWR F++E+ G +R G P L++ + L+T
Sbjct: 45 FIYNYERGEVVCIVCGAVVQEQLLDLGPEWRAFTSEERG-QRARTGAPLTRLISEA-LTT 102
Query: 76 MIGPGRGDAS---------FDGFGMSKYQNR-RTMNSSDRALLNAIREINSMADRINLTK 125
+I D S + + K+Q R R S +R + A +E+ + + + +
Sbjct: 103 VIDWRDKDVSGKELDIKRKLEVIRLRKWQTRARVQTSYERNFIQAAQELERLRSSMGIPR 162
Query: 126 TIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIG 185
+++A +++Q + + ++GRS +A+A+A LY+ACR +PR E+ +K S++E+
Sbjct: 163 PCIEQALEIYRQALEKELVRGRSVEAMAAAALYMACRMMKMPRPLDELVRYTKASRREVA 222
Query: 186 RCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPIS 245
RC++L+L+ L V + ++SR L L V K A I +KA + I G+ P
Sbjct: 223 RCYRLLLRELNVKVPISDPTLYISRIAEQLKLSGEVVKTAIDILQKAKKAGITAGKDPAG 282
Query: 246 VAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
+AAAA+Y+AS D R+QK+ AGV EVT+R YK
Sbjct: 283 LAAAAVYIASLMHGDNRTQKDFAVAAGVTEVTVRNRYK 320
>gi|435846022|ref|YP_007308272.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natronococcus occultus SP4]
gi|433672290|gb|AGB36482.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natronococcus occultus SP4]
Length = 326
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 94/278 (33%), Positives = 154/278 (55%), Gaps = 13/278 (4%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTF-SNEKSGVDPSRVGGPENPLLNGSDLS 74
L+ D G+ +C +CGLVV + +D G EWR F + EK+ + SRVG P ++ LS
Sbjct: 38 LVVDDEHGETVCEDCGLVVEEDSVDRGPEWRAFDATEKN--EKSRVGAPTTNTMHDKGLS 95
Query: 75 TMIGPGRGDASFDGFG---------MSKYQNR-RTMNSSDRALLNAIREINSMADRINLT 124
T I DA + G + K+ R RT +S +R L A+ EI+ MA + L
Sbjct: 96 TNIDWRNKDAYGNSLGSRQREKMQRLRKWNERFRTRDSKERNLKQALGEIDRMASALGLP 155
Query: 125 KTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEI 184
+ + A+ ++++ + L GRS + +++AC+Y A RQ GVPR+ EI VS++ K EI
Sbjct: 156 TNVRETASVIYRRALEEDLLPGRSIEGVSTACVYAAARQAGVPRSLDEIADVSRVEKNEI 215
Query: 185 GRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPI 244
R ++ +++ L V ++ RF S L L + + A + + A E + G+SP+
Sbjct: 216 ARTYRYVVRELGLEVQPADPESYVPRFASGLELSDEAEHRARGLLQNAKEKGVHSGKSPV 275
Query: 245 SVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSY 282
+AAAA+Y A+ +++K +Q + D+A ++EVTIR Y
Sbjct: 276 GLAAAAVYAAALLTNEKTTQAAVSDVADISEVTIRNRY 313
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 48/78 (61%)
Query: 208 MSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEI 267
+ R S L LP V++ A+ I R+A+E D++PGRS V+ A +Y A++ + RS EI
Sbjct: 145 IDRMASALGLPTNVRETASVIYRRALEEDLLPGRSIEGVSTACVYAAARQAGVPRSLDEI 204
Query: 268 GDIAGVAEVTIRQSYKLM 285
D++ V + I ++Y+ +
Sbjct: 205 ADVSRVEKNEIARTYRYV 222
>gi|448358672|ref|ZP_21547349.1| transcription factor TFIIB cyclin-like protein [Natrialba
chahannaoensis JCM 10990]
gi|445645254|gb|ELY98260.1| transcription factor TFIIB cyclin-like protein [Natrialba
chahannaoensis JCM 10990]
Length = 329
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 98/290 (33%), Positives = 155/290 (53%), Gaps = 13/290 (4%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTF-SNEKSGVDPSRVGGPENPLLNGSDLS 74
LI D + +C ECGLVV + ID G EWR F + EK SRVG P +++ LS
Sbjct: 41 LISDDEHAETVCQECGLVVEEDEIDRGPEWRAFDAAEKD--QKSRVGAPTTNMMHDQGLS 98
Query: 75 TMIGPGRGDA---SFDGFGMSKYQNRRTMN-------SSDRALLNAIREINSMADRINLT 124
T IG DA S K Q RT N S +R L A+ EI+ MA + L
Sbjct: 99 TNIGWQDKDAYGKSLSSRQRQKMQRLRTWNERFRTRDSKERNLKQALGEIDRMASALGLP 158
Query: 125 KTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEI 184
+ + + A+ ++++ + L GRS + +A++ LY A RQ G PR+ EI AVS++ K E+
Sbjct: 159 ENVRETASVIYRRALEEDLLPGRSIEGVATSSLYAAARQAGTPRSLDEISAVSRVDKMEL 218
Query: 185 GRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPI 244
R ++ I++ L V ++ RF S+L L + ++ A + A + + G+SP+
Sbjct: 219 TRTYRYIIRELGLEVKPADPEHYVPRFVSDLDLSDETERMARELLDSARKEGVHSGKSPV 278
Query: 245 SVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKLFP 294
+AAA +Y A+ +++K +Q E+ ++A ++EVTIR YK + + P
Sbjct: 279 GLAAAGVYAAALLTNEKVTQNEVSEVASISEVTIRNRYKELLEASDTAAP 328
>gi|379003108|ref|YP_005258780.1| Transcription initiation factor TFIIIB, Brf1 subunit/Transcription
initiation factor TFIIB [Pyrobaculum oguniense TE7]
gi|375158561|gb|AFA38173.1| Transcription initiation factor TFIIIB, Brf1 subunit/Transcription
initiation factor TFIIB [Pyrobaculum oguniense TE7]
Length = 348
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 91/278 (32%), Positives = 156/278 (56%), Gaps = 12/278 (4%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLST 75
+ +Y G+ +C CG VV ++++D+G EWR F++E+ G +R G P L++ + L+T
Sbjct: 60 FVYNYERGEVVCIVCGAVVQEQLLDLGPEWRAFTSEEKG-QRARTGAPLTRLISEA-LTT 117
Query: 76 MIGPGRGDAS---------FDGFGMSKYQNR-RTMNSSDRALLNAIREINSMADRINLTK 125
+I D S + + K+Q R R S +R + A +E+ + + + +
Sbjct: 118 VIDWRDKDVSGKELDIKRKLEVIRLRKWQTRARVQTSYERNFIQAAQELERLKSSMGVPR 177
Query: 126 TIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIG 185
V++A +++Q + + ++GRS +A+A+A LY+ACR +PR E+ +K S++E+
Sbjct: 178 PCVEQALEIYRQALEKELVRGRSVEAMAAAALYMACRMMRMPRPLDELVRYTKASRREVA 237
Query: 186 RCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPIS 245
RC++L+L+ L V + ++SR L L V KAA I ++A + I G+ P
Sbjct: 238 RCYRLLLRELNVKVPISDPVLYISRIAEQLKLSGEVVKAAIDILQRAKKAGITAGKDPAG 297
Query: 246 VAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
+AAAA+Y+AS D R+QK+ AGV EVT+R YK
Sbjct: 298 LAAAAVYIASLMHGDNRTQKDFAVAAGVTEVTVRNRYK 335
>gi|429191039|ref|YP_007176717.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natronobacterium gregoryi SP2]
gi|448327395|ref|ZP_21516723.1| Transcription factor TFIIB cyclin-related protein [Natronobacterium
gregoryi SP2]
gi|429135257|gb|AFZ72268.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natronobacterium gregoryi SP2]
gi|445608493|gb|ELY62332.1| Transcription factor TFIIB cyclin-related protein [Natronobacterium
gregoryi SP2]
Length = 326
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 94/278 (33%), Positives = 154/278 (55%), Gaps = 13/278 (4%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTF-SNEKSGVDPSRVGGPENPLLNGSDLS 74
L+ D G+ +C +CGLVV + +D G EWR F + EK+ + SRVG P ++ LS
Sbjct: 38 LVVDDEHGETVCEDCGLVVEEDSVDRGPEWRAFDAAEKN--EKSRVGAPTTNTMHDKGLS 95
Query: 75 TMIGPGRGDASFDGFG---------MSKYQNR-RTMNSSDRALLNAIREINSMADRINLT 124
T I DA + G + K+ R RT +S +R L A+ EI+ MA + L
Sbjct: 96 TNIDWRNKDAYGNSLGSRQREKMQRLRKWNERFRTRDSKERNLKQALGEIDRMASALGLP 155
Query: 125 KTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEI 184
+ + A+ ++++ D L GRS + ++++C+Y A RQ GVPR+ EI VS++ K EI
Sbjct: 156 NNVRETASVIYRRALDEDLLPGRSIEGVSTSCVYAAARQAGVPRSLDEIADVSRVEKNEI 215
Query: 185 GRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPI 244
R ++ +++ L V ++ RF S L L + + A + + A E + G+SP+
Sbjct: 216 ARTYRYVVRELGLEVQPADPESYVPRFASGLELSDEAEHRARALLQNAKEKGVHSGKSPV 275
Query: 245 SVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSY 282
+AAAA+Y A+ +++K +Q + D+A ++EVTIR Y
Sbjct: 276 GLAAAAVYAAALLTNEKTTQAAVSDVADISEVTIRNRY 313
Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 49/78 (62%)
Query: 208 MSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEI 267
+ R S L LPN V++ A+ I R+A++ D++PGRS V+ + +Y A++ + RS EI
Sbjct: 145 IDRMASALGLPNNVRETASVIYRRALDEDLLPGRSIEGVSTSCVYAAARQAGVPRSLDEI 204
Query: 268 GDIAGVAEVTIRQSYKLM 285
D++ V + I ++Y+ +
Sbjct: 205 ADVSRVEKNEIARTYRYV 222
>gi|110667197|ref|YP_657008.1| transcription initiation factor TFB [Haloquadratum walsbyi DSM
16790]
gi|109624944|emb|CAJ51356.1| transcription initiation factor TFB [Haloquadratum walsbyi DSM
16790]
Length = 329
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 92/271 (33%), Positives = 149/271 (54%), Gaps = 11/271 (4%)
Query: 23 GDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLSTMIGPGRG 82
G+ I G+VV + ID G EWR F N SRVG P ++ L+T I
Sbjct: 50 GEIIHEPTGIVVEEEQIDRGPEWRAF-NHSERQSKSRVGAPTTKTMHDKGLTTTIDWKDK 108
Query: 83 DASFDGFG---------MSKYQNR-RTMNSSDRALLNAIREINSMADRINLTKTIVDRAN 132
DA + K+Q R RT ++ +R L A+ E++ MA + + +++ + A+
Sbjct: 109 DAYGRSLSSEKRSQMHRLRKWQERIRTKDAGERNLQFALSEVDRMASALGVPRSVREVAS 168
Query: 133 NLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGRCFKLIL 192
++++ ++GRS + ++++ LY ACR+EG+PR+ +EI VS++ +KEIGR ++ I
Sbjct: 169 VIYRRALSEDLIRGRSIEGVSTSALYAACRKEGIPRSLEEISEVSRVERKEIGRTYRYIS 228
Query: 193 KALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIY 252
+ L + + ++ RFCS L L VQ A I E ++ G+SP AAAAIY
Sbjct: 229 QELGLEMRPVDPKKYVPRFCSELDLSKEVQSKADEIIETTAEQGLLSGKSPTGYAAAAIY 288
Query: 253 MASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
AS ++K++Q+E+ D+A V EVTIR Y+
Sbjct: 289 AASLLCNEKKTQREVADVAQVTEVTIRNRYQ 319
>gi|335434083|ref|ZP_08558890.1| Transcription factor TFIIB cyclin-related protein [Halorhabdus
tiamatea SARL4B]
gi|334898148|gb|EGM36265.1| Transcription factor TFIIB cyclin-related protein [Halorhabdus
tiamatea SARL4B]
Length = 334
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 89/273 (32%), Positives = 146/273 (53%), Gaps = 17/273 (6%)
Query: 23 GDQICSECGLVVGDRVIDVGSEWRTFS-NEKSGVDPSRVGGPENPLLNGSDLSTMIGPGR 81
G+++C +CG+V+ ID G EWR F+ +EK + SRVG P LL+ LST IG
Sbjct: 45 GERVCEQCGVVLESDAIDHGPEWRAFTPSEKD--ERSRVGSPTTKLLHDEGLSTSIGWSD 102
Query: 82 GDASFDGFGMSKYQNR------------RTMNSSDRALLNAIREINSMADRINLTKTIVD 129
DAS G +S Q R +S DR L A+ EI+ MA + L + + +
Sbjct: 103 KDAS--GRTLSPSQREKMSRLRVWDERFRATDSRDRNLKQALGEIDRMASALGLPENVRE 160
Query: 130 RANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGRCFK 189
A+ ++++ D L GRS + +A+A LY A RQ G PR+ E +S++ +++ R ++
Sbjct: 161 TASVIYRRALDEDLLPGRSIEGMATASLYAAARQAGTPRSLDEFEPISRVRRQKYARAYR 220
Query: 190 LILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAA 249
+ + LE + +++ RF S L L + +++ A + + G++P +AA
Sbjct: 221 YLARQLELGIAPADPAEYLPRFVSELELSDDLERKARELLSAVKKTGQHSGKNPTGLAAG 280
Query: 250 AIYMASQASSDKRSQKEIGDIAGVAEVTIRQSY 282
AIY A + D+ +Q+E+ + A V+EVTIR Y
Sbjct: 281 AIYAAGLLTGDRITQQEVAETADVSEVTIRDRY 313
Score = 50.4 bits (119), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 51/102 (50%), Gaps = 4/102 (3%)
Query: 208 MSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEI 267
+ R S L LP V++ A+ I R+A++ D++PGRS +A A++Y A++ + RS E
Sbjct: 145 IDRMASALGLPENVRETASVIYRRALDEDLLPGRSIEGMATASLYAAARQAGTPRSLDEF 204
Query: 268 GDIAGVAEVTIRQSYKLMYPHASKLFPQDFVFHTPIHELPQL 309
I+ V RQ Y Y + ++ P LP+
Sbjct: 205 EPISRVR----RQKYARAYRYLARQLELGIAPADPAEYLPRF 242
>gi|289580210|ref|YP_003478676.1| transcription factor TFIIB cyclin-like protein [Natrialba magadii
ATCC 43099]
gi|448281448|ref|ZP_21472754.1| transcription factor TFIIB cyclin-like protein [Natrialba magadii
ATCC 43099]
gi|289529763|gb|ADD04114.1| Transcription factor TFIIB cyclin-related protein [Natrialba
magadii ATCC 43099]
gi|445578870|gb|ELY33270.1| transcription factor TFIIB cyclin-like protein [Natrialba magadii
ATCC 43099]
Length = 329
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 97/290 (33%), Positives = 155/290 (53%), Gaps = 13/290 (4%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTF-SNEKSGVDPSRVGGPENPLLNGSDLS 74
LI D + +C +CGLVV + ID G EWR F + EK SRVG P +++ LS
Sbjct: 41 LISDDEHAETVCQDCGLVVEEDEIDRGPEWRAFDAAEKD--QKSRVGAPTTNMMHDQGLS 98
Query: 75 TMIGPGRGDA---SFDGFGMSKYQNRRTMN-------SSDRALLNAIREINSMADRINLT 124
T IG DA S K Q RT N S +R L A+ EI+ MA + L
Sbjct: 99 TNIGWQDKDAYGKSLSSRQRQKMQRLRTWNERFRTRDSKERNLKQALGEIDRMASALGLP 158
Query: 125 KTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEI 184
+ + + A+ ++++ + L GRS + +A++ LY A RQ G PR+ EI AVS++ K E+
Sbjct: 159 ENVRETASVIYRRALEEDLLPGRSIEGVATSSLYAAARQAGTPRSLDEISAVSRVDKMEL 218
Query: 185 GRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPI 244
R ++ I++ L V ++ RF S+L L + ++ A + A + + G+SP+
Sbjct: 219 TRTYRYIIRELGLEVKPADPEHYVPRFVSDLDLSDETERMARELLESARQEGVHSGKSPV 278
Query: 245 SVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKLFP 294
+AAA +Y A+ +++K +Q E+ ++A ++EVTIR YK + + P
Sbjct: 279 GLAAAGVYAAALLTNEKVTQNEVSEVASISEVTIRNRYKELLEASDTAAP 328
>gi|383620637|ref|ZP_09947043.1| transcription factor TFIIB cyclin-like protein [Halobiforma
lacisalsi AJ5]
gi|448698233|ref|ZP_21698872.1| transcription factor TFIIB cyclin-like protein [Halobiforma
lacisalsi AJ5]
gi|445780852|gb|EMA31722.1| transcription factor TFIIB cyclin-like protein [Halobiforma
lacisalsi AJ5]
Length = 328
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 94/278 (33%), Positives = 154/278 (55%), Gaps = 13/278 (4%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTF-SNEKSGVDPSRVGGPENPLLNGSDLS 74
L+ D G+ +C +CGLVV + +D G EWR F + EK+ + SRVG P ++ LS
Sbjct: 40 LVVDDEHGETVCEDCGLVVEEDSVDRGPEWRAFDAAEKN--EKSRVGAPTTNTMHDKGLS 97
Query: 75 TMIGPGRGDASFDGFG---------MSKYQNR-RTMNSSDRALLNAIREINSMADRINLT 124
T I DA + G + K+ R RT +S +R L A+ EI+ MA + L
Sbjct: 98 TNIDWRNKDAYGNSLGSRQREKMQRLRKWNERFRTRDSKERNLKQALGEIDRMASALGLP 157
Query: 125 KTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEI 184
+ + A+ ++++ D L GRS + ++++C+Y A RQ GVPR+ EI VS++ K EI
Sbjct: 158 NNVRETASVIYRRALDEDLLPGRSIEGVSTSCVYAAARQAGVPRSLDEIADVSRVEKNEI 217
Query: 185 GRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPI 244
R ++ +++ L V ++ RF S L L + + A + + A E + G+SP+
Sbjct: 218 ARTYRYVVRELGLEVQPADPESYVPRFASGLDLSDEAEHRARALLQNAKEKGVHSGKSPV 277
Query: 245 SVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSY 282
+AAAA+Y A+ +++K +Q + D+A ++EVTIR Y
Sbjct: 278 GLAAAAVYAAALLTNEKTTQAAVSDVADISEVTIRNRY 315
Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 49/78 (62%)
Query: 208 MSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEI 267
+ R S L LPN V++ A+ I R+A++ D++PGRS V+ + +Y A++ + RS EI
Sbjct: 147 IDRMASALGLPNNVRETASVIYRRALDEDLLPGRSIEGVSTSCVYAAARQAGVPRSLDEI 206
Query: 268 GDIAGVAEVTIRQSYKLM 285
D++ V + I ++Y+ +
Sbjct: 207 ADVSRVEKNEIARTYRYV 224
>gi|448576224|ref|ZP_21642267.1| transcription initiation factor TFB [Haloferax larsenii JCM 13917]
gi|445729904|gb|ELZ81498.1| transcription initiation factor TFB [Haloferax larsenii JCM 13917]
Length = 332
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 94/282 (33%), Positives = 153/282 (54%), Gaps = 15/282 (5%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLST 75
L++D G+ +C ECGLVV D V+D G EWR F + SRVG P +++ LST
Sbjct: 44 LVQDNERGETVCGECGLVVEDTVVDRGPEWRAFDAAERD-SKSRVGAPTTKMMHDKGLST 102
Query: 76 MIGPGRGDASFDGFGMSKYQNR------------RTMNSSDRALLNAIREINSMADRINL 123
IG DA G +S Q RT +S +R L A+ EI+ MA + L
Sbjct: 103 NIGWQNKDAY--GKSLSPRQREQMQRLRTWNERFRTRDSKERNLKQALGEIDRMASALGL 160
Query: 124 TKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKE 183
+ + + A+ ++++ + L GRS + +A+A LY A R PR+ E+ VS++ K E
Sbjct: 161 PENVRETASVIYRRALNDDLLPGRSIEGVATASLYAAARMADTPRSLDELEKVSRVEKME 220
Query: 184 IGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSP 243
+ R ++ I++ L+ + ++ RF S L L + ++ A + R A E + G+SP
Sbjct: 221 LTRTYRYIVRELKLEIKPADPEQYVPRFASELGLSDEAERQARELLRGAKETGVHSGKSP 280
Query: 244 ISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLM 285
+ +AAAA+Y A+ +++K +Q E+ +A ++EVTIR YK +
Sbjct: 281 VGLAAAAVYAAALLTNEKVTQSEVSAVADISEVTIRNRYKEL 322
>gi|452206769|ref|YP_007486891.1| transcription initiation factor TFB [Natronomonas moolapensis
8.8.11]
gi|452082869|emb|CCQ36145.1| transcription initiation factor TFB [Natronomonas moolapensis
8.8.11]
Length = 324
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 99/286 (34%), Positives = 158/286 (55%), Gaps = 17/286 (5%)
Query: 13 DAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTF-SNEKSGVDPSRVGGPENPLLNGS 71
DA L D G+ +C+ECGLVV + ID G EWR F S EK SRVG P +++
Sbjct: 34 DARLEADSEHGETVCTECGLVVEEDEIDRGPEWRAFDSAEKD--QKSRVGAPTTNMMHDK 91
Query: 72 DLSTMIGPGRGDASFDGFGMSKYQNR------------RTMNSSDRALLNAIREINSMAD 119
LST IG DA G +S Q + RT +S +R L A+ EI MA
Sbjct: 92 GLSTNIGWQDKDAY--GRQLSTRQRQKMQRLRTWNERFRTRDSKERNLKQALGEIERMAS 149
Query: 120 RINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKI 179
+ L + + + A+ ++++ D L GRS + +++A LY A RQ G+PR+ EI VS++
Sbjct: 150 ALGLPENVRETASVIYRRALDDNLLPGRSIEGVSTAALYTAARQAGIPRSLDEIERVSRV 209
Query: 180 SKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVP 239
+ E+ R ++ I++ L V ++ RF S+L L + V++ A + A ++
Sbjct: 210 DRMELTRTYRYIIRELNLEVKPADPESYIPRFVSDLGLSDEVERRARELIEAARGDGLLS 269
Query: 240 GRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLM 285
G+SP+ +AAAA+Y A+ ++K +Q ++ ++A ++EVTIR YK +
Sbjct: 270 GKSPVGLAAAAVYAAALLCNEKVTQNDVSEVADISEVTIRNRYKEL 315
>gi|385802603|ref|YP_005839003.1| transcription initiation factor TFB [Haloquadratum walsbyi C23]
gi|339728095|emb|CCC39217.1| transcription initiation factor TFB [Haloquadratum walsbyi C23]
Length = 329
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 92/271 (33%), Positives = 149/271 (54%), Gaps = 11/271 (4%)
Query: 23 GDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLSTMIGPGRG 82
G+ I G+VV + ID G EWR F N SRVG P ++ L+T I
Sbjct: 50 GEIIHEPTGIVVEEEQIDRGPEWRAF-NHSERQSKSRVGAPTTKTMHDKGLTTTIDWKDK 108
Query: 83 DASFDGFG---------MSKYQNR-RTMNSSDRALLNAIREINSMADRINLTKTIVDRAN 132
DA + K+Q R RT ++ +R L A+ E++ MA + + +++ + A+
Sbjct: 109 DAYGRSLSSEKRSQMHRLRKWQERIRTKDAGERNLQFALSEVDRMASALGVPRSVREVAS 168
Query: 133 NLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGRCFKLIL 192
++++ ++GRS + ++++ LY ACR+EG+PR+ +EI VS++ +KEIGR ++ I
Sbjct: 169 VIYRRALSEDLIRGRSIEGVSTSALYAACRKEGIPRSLEEISEVSRVERKEIGRTYRYIS 228
Query: 193 KALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIY 252
+ L + + ++ RFCS L L VQ A I E ++ G+SP AAAAIY
Sbjct: 229 QELGLEMRPVDPKKYVPRFCSELDLSKEVQSKADEIIETTAEQGLLSGKSPTGYAAAAIY 288
Query: 253 MASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
AS ++K++Q+E+ D+A V EVTIR Y+
Sbjct: 289 AASLLCNEKKTQREVADVAQVTEVTIRNRYQ 319
>gi|145592173|ref|YP_001154175.1| transcription initiation factor IIB [Pyrobaculum arsenaticum DSM
13514]
gi|189029859|sp|A4WMA6.1|TF2B_PYRAR RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|145283941|gb|ABP51523.1| Transcription initiation factor IIB (TFIIB) [Pyrobaculum
arsenaticum DSM 13514]
Length = 333
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 91/278 (32%), Positives = 156/278 (56%), Gaps = 12/278 (4%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLST 75
+ +Y G+ +C CG VV ++++D+G EWR F++E+ G +R G P L++ + L+T
Sbjct: 45 FVYNYERGEVVCIVCGAVVQEQLLDLGPEWRAFTSEEKG-QRARTGAPLTRLISEA-LTT 102
Query: 76 MIGPGRGDAS---------FDGFGMSKYQNR-RTMNSSDRALLNAIREINSMADRINLTK 125
+I D S + + K+Q R R S +R + A +E+ + + + +
Sbjct: 103 VIDWRDKDVSGRELDIKRKLEVIRLRKWQTRARVQTSYERNFIQAAQELERLKSSMGVPR 162
Query: 126 TIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIG 185
V++A +++Q + + ++GRS +A+A+A LY+ACR +PR E+ +K S++E+
Sbjct: 163 PCVEQALEIYRQALEKELVRGRSVEAMAAAALYMACRMMRMPRPLDELVRYTKASRREVA 222
Query: 186 RCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPIS 245
RC++L+L+ L V + ++SR L L V KAA I ++A + I G+ P
Sbjct: 223 RCYRLLLRELNVKVPISDPVLYISRIAEQLKLSGEVVKAAIDILQRAKKAGITAGKDPAG 282
Query: 246 VAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
+AAAA+Y+AS D R+QK+ AGV EVT+R YK
Sbjct: 283 LAAAAVYIASLMHGDNRTQKDFAVAAGVTEVTVRNRYK 320
>gi|448456850|ref|ZP_21595506.1| transcription factor TFIIB cyclin-related protein [Halorubrum
lipolyticum DSM 21995]
gi|445811447|gb|EMA61454.1| transcription factor TFIIB cyclin-related protein [Halorubrum
lipolyticum DSM 21995]
Length = 581
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 97/286 (33%), Positives = 155/286 (54%), Gaps = 19/286 (6%)
Query: 23 GDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLSTMIGPGRG 82
G+ I E GL+V + ID G EWR F N SRVG P ++ L+T I
Sbjct: 42 GELIHEETGLIVEEEQIDPGPEWRAF-NHSERQSKSRVGAPTTKTMHDKGLTTTIDWKDK 100
Query: 83 DASFDGFGMS-------------KYQNR-RTMNSSDRALLNAIREINSMADRINLTKTIV 128
DA +G S K+Q R RT ++ +R L A+ EI+ MA + + +++
Sbjct: 101 DA----YGRSISSKKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDRMASALGVPRSVR 156
Query: 129 DRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGRCF 188
+ A+ ++++ + ++GRS + +++A LY ACR+EG+PR+ +EI VS++ +KEIGR +
Sbjct: 157 EVASVIYRRALNEDLIRGRSIEGVSTAALYAACRKEGIPRSLEEISDVSRVERKEIGRTY 216
Query: 189 KLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAA 248
+ I + L + + ++ RF S L L VQ A I E ++ G+SP AA
Sbjct: 217 RYISQELGLEMRPVDPKKYVPRFSSELELSEEVQSKANEIIETTAEKGLLSGKSPTGYAA 276
Query: 249 AAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKLFP 294
AAIY AS ++K++Q+E+ D+A V EVTIR Y+ ++ P
Sbjct: 277 AAIYAASLLCNEKKTQREVADVAQVTEVTIRNRYQEQIXSVTRRRP 322
>gi|448315422|ref|ZP_21505070.1| transcription initiation factor TFB [Natronococcus jeotgali DSM
18795]
gi|445611595|gb|ELY65342.1| transcription initiation factor TFB [Natronococcus jeotgali DSM
18795]
Length = 319
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 93/271 (34%), Positives = 151/271 (55%), Gaps = 12/271 (4%)
Query: 23 GDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLSTMIGPGRG 82
G++IC ECGLV+ + ++D G EWR F N + + SRVG P L+ L+T I
Sbjct: 41 GERICEECGLVIEEELVDSGPEWRAF-NHQERQEKSRVGAPTTTTLHDKGLTTEIDWKNK 99
Query: 83 DASFDGFG---------MSKYQNR-RTMNSSDRALLNAIREINSMADRINLTKTIVDRAN 132
DA + K+Q R RT ++ +R L A+ EI+ MA + + + + + A+
Sbjct: 100 DAYGRAISSDKRSQMHRLRKWQKRIRTKDAGERNLQFALSEIDRMASALGVPRDVREVAS 159
Query: 133 NLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGRCFKLIL 192
++++ D ++GRS + +A+A LY CR+EG+PR+ +EI VS++ + EI R ++ +
Sbjct: 160 VIYRRALDEDLIRGRSIEGVATAALYAGCRREGIPRSLEEIADVSRVERLEISRTYRYVS 219
Query: 193 KALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIY 252
L + I ++ RF S L LP V+ A I + + ++ GR P AAAAIY
Sbjct: 220 NELGLELLPIDPKQYVPRFSSKLDLPQEVKVKANEIIDETAD-PLLSGRGPSGFAAAAIY 278
Query: 253 MASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
A+ ++KR+QK + ++A V EVTIR Y+
Sbjct: 279 AAALLCNEKRTQKAVAEVAQVTEVTIRNRYQ 309
>gi|448351752|ref|ZP_21540546.1| transcription factor TFIIB cyclin-like protein [Natrialba
taiwanensis DSM 12281]
gi|445632312|gb|ELY85524.1| transcription factor TFIIB cyclin-like protein [Natrialba
taiwanensis DSM 12281]
Length = 341
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 98/290 (33%), Positives = 156/290 (53%), Gaps = 18/290 (6%)
Query: 9 YEHPDAP-----LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTF-SNEKSGVDPSRVGG 62
YEH P L+ D + +C +CGLVV + ID G EWR F + EK + SRVG
Sbjct: 42 YEHEQCPECSGRLVSDAEHAETVCEDCGLVVQEGEIDRGPEWRAFDAAEKD--EKSRVGA 99
Query: 63 PENPLLNGSDLSTMIGPGRGDA---SFDGFGMSKYQNRRTMN-------SSDRALLNAIR 112
P +++ LST IG DA S K Q RT N S +R L A+
Sbjct: 100 PTTNMMHDQGLSTNIGWQDKDAYGRSLSNRQRQKMQRLRTWNERFRTRDSKERNLKQALG 159
Query: 113 EINSMADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKE 172
EI+ MA + L + + + A+ ++++ + L GRS + +++A LY + RQ G PR+ E
Sbjct: 160 EIDRMASALGLPENVRETASVIYRRALEEDLLPGRSIEGVSTASLYASARQAGTPRSLDE 219
Query: 173 ICAVSKISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKA 232
I AVS++ K EI R ++ +++ L V ++ RF S+L L + ++ A + A
Sbjct: 220 ISAVSRVEKDEIARTYRYVIRELGLEVQPADPVSYVPRFASDLELSDETERRARTLLETA 279
Query: 233 VELDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSY 282
E I G+SP+ +AAAA+Y + +++K +Q ++ ++A ++EVTIR Y
Sbjct: 280 KESGIHSGKSPVGLAAAAVYAGALLTNEKVTQNDVSEVASISEVTIRNRY 329
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 55/96 (57%), Gaps = 1/96 (1%)
Query: 208 MSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEI 267
+ R S L LP V++ A+ I R+A+E D++PGRS V+ A++Y +++ + RS EI
Sbjct: 161 IDRMASALGLPENVRETASVIYRRALEEDLLPGRSIEGVSTASLYASARQAGTPRSLDEI 220
Query: 268 GDIAGVAEVTIRQSYKLMYPHAS-KLFPQDFVFHTP 302
++ V + I ++Y+ + ++ P D V + P
Sbjct: 221 SAVSRVEKDEIARTYRYVIRELGLEVQPADPVSYVP 256
>gi|448329811|ref|ZP_21519107.1| Transcription factor TFIIB cyclin-related protein [Natrinema
versiforme JCM 10478]
gi|445613430|gb|ELY67131.1| Transcription factor TFIIB cyclin-related protein [Natrinema
versiforme JCM 10478]
Length = 319
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 93/278 (33%), Positives = 152/278 (54%), Gaps = 11/278 (3%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLST 75
++ D G+Q+C+ECGLV+ + ID G EWR F N + + SRVG P ++ L+T
Sbjct: 31 IVHDPDRGEQVCAECGLVLTEDPIDYGPEWRAF-NAQEHDELSRVGAPLTQSMHDRGLTT 89
Query: 76 MIGPGRGDA-----SFDGFG----MSKYQNR-RTMNSSDRALLNAIREINSMADRINLTK 125
I DA S D G + +Q R RT N+ +R L A+ EI+ M + + K
Sbjct: 90 TIDWRNKDANGHSMSADKHGQLHRLRVWQERIRTKNAGERNLKYALSEIDRMVSALGVPK 149
Query: 126 TIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIG 185
+ + A+ +++Q + ++GRS + +A++ LY ACR+E +PR+ +E+ AVS++ ++EIG
Sbjct: 150 PVKETASVIYRQALEQDLIRGRSIEGVATSALYTACRKEDIPRSLEEVTAVSRVDQREIG 209
Query: 186 RCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPIS 245
R ++ I L+ +++ F+ RFCS L + V+ A I + E + G+SP
Sbjct: 210 RTYRYIADELDINLEPTNPRQFVPRFCSELDVDKDVETKAIDIIDRTTEQGLHSGKSPTG 269
Query: 246 VAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
AAAAIY A + Q+ + D A VT+R Y+
Sbjct: 270 FAAAAIYAAGLLCDETIPQRAVADTAQTTVVTVRNRYR 307
>gi|57642222|ref|YP_184700.1| transcription initiation factor IIB [Thermococcus kodakarensis
KOD1]
gi|14195235|sp|P58109.1|TF2B2_PYRKO RecName: Full=Transcription initiation factor IIB 2; Short=TFIIB 2
gi|12381905|dbj|BAB21262.1| Tk-TFB [Thermococcus kodakaraensis]
gi|57160546|dbj|BAD86476.1| transcription initiation factor IIB [Thermococcus kodakarensis
KOD1]
Length = 306
Score = 149 bits (376), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 95/281 (33%), Positives = 160/281 (56%), Gaps = 17/281 (6%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFS---NEKSGVDPSRVGGPENPLLNGSD 72
I D R G+ +C++CG V+ + V+D G EWR F EK +R G P +++
Sbjct: 18 FIYDPRRGEIVCAKCGYVIEENVVDEGPEWRAFEPGQREKR----ARTGAPMTLMIHDKG 73
Query: 73 LSTMIGPGRGDASFDGF-GMSK--------YQNRRTMN-SSDRALLNAIREINSMADRIN 122
LST I D + GM + +Q R +N +++R L A+ E++ MA ++
Sbjct: 74 LSTDIDWRDKDIHGNQITGMYRNKLRRLRMWQRRMRINDAAERNLAFALSELDRMAAQLR 133
Query: 123 LTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKK 182
L + + + A +L+++ K ++GRS + + SA LY ACR EG+PRT EI +VSK+SKK
Sbjct: 134 LPRHLKEVAASLYRKAVMKKLIRGRSIEGMVSAALYAACRMEGIPRTLDEIASVSKVSKK 193
Query: 183 EIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRS 242
EIGR ++ + + L ++ + +++ RF L + +K A I +A++ I G+
Sbjct: 194 EIGRSYRFMARGLGLNLRPTSPIEYVDRFGDALGVSARTKKRAKEILNEAIKRGITSGKG 253
Query: 243 PISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
P +AAAA+Y+A+ +K++Q+E+ ++A V EVT+R YK
Sbjct: 254 PTGLAAAALYIAALLEGEKKTQREVAEVAHVTEVTVRNRYK 294
Score = 46.2 bits (108), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 43/78 (55%)
Query: 208 MSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEI 267
+ R + L LP +++ A + RKAV ++ GRS + +AA+Y A + R+ EI
Sbjct: 125 LDRMAAQLRLPRHLKEVAASLYRKAVMKKLIRGRSIEGMVSAALYAACRMEGIPRTLDEI 184
Query: 268 GDIAGVAEVTIRQSYKLM 285
++ V++ I +SY+ M
Sbjct: 185 ASVSKVSKKEIGRSYRFM 202
>gi|257051172|ref|YP_003129005.1| Transcription factor TFIIB cyclin-related [Halorhabdus utahensis
DSM 12940]
gi|256689935|gb|ACV10272.1| Transcription factor TFIIB cyclin-related [Halorhabdus utahensis
DSM 12940]
Length = 323
Score = 149 bits (376), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 99/278 (35%), Positives = 152/278 (54%), Gaps = 13/278 (4%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTF-SNEKSGVDPSRVGGPENPLLNGSDLS 74
L+ D G+ +C ECGLVV + ID G EWR F + EK SRVG P +++ LS
Sbjct: 35 LVTDSERGETVCGECGLVVEEDEIDPGPEWRAFDAAEKD--QKSRVGAPTTNMMHDKGLS 92
Query: 75 TMIGPGRGDA---SFDGFGMSKYQNRRTMN-------SSDRALLNAIREINSMADRINLT 124
T IG DA S K Q RT N S +R L A+ EI+ MA + L
Sbjct: 93 TNIGWQDKDAYGNSLSSRQREKMQRLRTWNERFRTRDSKERNLKQALGEIDRMASALGLP 152
Query: 125 KTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEI 184
+ + + A+ ++++ D L GRS + +A+A LY A RQ G PR+ EI VS++ K E+
Sbjct: 153 ENVRETASVIYRRALDENLLPGRSIEGVATASLYAAARQAGNPRSLDEIDNVSRVEKDEV 212
Query: 185 GRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPI 244
R ++ +++ L+ V ++ RF S+L L ++ A + A + + G+SP+
Sbjct: 213 ARTYRYVVRELKLEVKPADPTSYVPRFASDLELTEEAERHARDLLENAKQEGVHSGKSPV 272
Query: 245 SVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSY 282
+AAAAIY AS +++K +Q E+ ++A ++EVTIR Y
Sbjct: 273 GLAAAAIYAASLLANEKVTQNEVSEVANISEVTIRNRY 310
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 56/96 (58%), Gaps = 1/96 (1%)
Query: 208 MSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEI 267
+ R S L LP V++ A+ I R+A++ +++PGRS VA A++Y A++ + + RS EI
Sbjct: 142 IDRMASALGLPENVRETASVIYRRALDENLLPGRSIEGVATASLYAAARQAGNPRSLDEI 201
Query: 268 GDIAGVAEVTIRQSYKLMYPHAS-KLFPQDFVFHTP 302
+++ V + + ++Y+ + ++ P D + P
Sbjct: 202 DNVSRVEKDEVARTYRYVVRELKLEVKPADPTSYVP 237
>gi|448301306|ref|ZP_21491299.1| transcription initiation factor IIB [Natronorubrum tibetense GA33]
gi|445584042|gb|ELY38366.1| transcription initiation factor IIB [Natronorubrum tibetense GA33]
Length = 325
Score = 149 bits (376), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 96/278 (34%), Positives = 154/278 (55%), Gaps = 13/278 (4%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTF-SNEKSGVDPSRVGGPENPLLNGSDLS 74
LI D + +C +CGLVV + ID G EWR F + EK + SRVG P +++ LS
Sbjct: 38 LISDTEHAETVCDDCGLVVEEGEIDRGPEWRAFDAGEKD--EKSRVGAPTTNMMHDQGLS 95
Query: 75 TMIGPGRGDA---SFDGFGMSKYQNRRTMN-------SSDRALLNAIREINSMADRINLT 124
T IG DA S K Q RT N S +R L A+ EI+ MA + L
Sbjct: 96 TNIGWQDKDAYGRSLSSRQRQKMQRLRTWNERFRTRDSKERNLKQALGEIDRMASALGLP 155
Query: 125 KTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEI 184
+++ + A+ ++++ + L GRS + +A+A LY + RQ G PR+ EI AVS++ K E+
Sbjct: 156 ESVRETASVIYRRALEEDLLPGRSIEGVATASLYASARQAGTPRSLDEISAVSRVEKDEV 215
Query: 185 GRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPI 244
R ++ +++ L V ++ RF S+L L + ++ A + A E I G+SP+
Sbjct: 216 ARTYRYVVRELGLEVKPADPEQYVPRFASDLDLSDETERRARSLLSTAKEKGIHSGKSPV 275
Query: 245 SVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSY 282
+AAAA+Y A+ +++K +Q ++ ++A ++EVTIR Y
Sbjct: 276 GLAAAAVYAAALLTNEKVTQNDVSEVANISEVTIRNRY 313
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 48/78 (61%)
Query: 208 MSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEI 267
+ R S L LP V++ A+ I R+A+E D++PGRS VA A++Y +++ + RS EI
Sbjct: 145 IDRMASALGLPESVRETASVIYRRALEEDLLPGRSIEGVATASLYASARQAGTPRSLDEI 204
Query: 268 GDIAGVAEVTIRQSYKLM 285
++ V + + ++Y+ +
Sbjct: 205 SAVSRVEKDEVARTYRYV 222
>gi|336255382|ref|YP_004598489.1| transcription initiation factor IIB [Halopiger xanaduensis SH-6]
gi|335339371|gb|AEH38610.1| Transcription initiation factor IIB [Halopiger xanaduensis SH-6]
Length = 329
Score = 149 bits (376), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 94/278 (33%), Positives = 154/278 (55%), Gaps = 13/278 (4%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTF-SNEKSGVDPSRVGGPENPLLNGSDLS 74
L+ D G+ +C +CGLVV + +D G EWR F + EK+ + SRVG P ++ LS
Sbjct: 41 LVVDDEHGETVCEDCGLVVEEDSVDRGPEWRAFDAAEKN--EKSRVGAPTTNTMHDKGLS 98
Query: 75 TMIGPGRGDASFDGFG---------MSKYQNR-RTMNSSDRALLNAIREINSMADRINLT 124
T I DA + G + K+ R RT +S +R L A+ EI+ MA + L
Sbjct: 99 TNIDWRNKDAYGNSLGSRQREKMQRLRKWNERFRTRDSKERNLKQALGEIDRMASALGLP 158
Query: 125 KTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEI 184
+ + A+ ++++ + L GRS + +++AC+Y A RQ GVPR+ EI VS++ K EI
Sbjct: 159 NNVRETASVIYRRALEEDLLPGRSIEGVSTACVYAAARQAGVPRSLDEIADVSRVEKNEI 218
Query: 185 GRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPI 244
R ++ +++ L V ++ RF S L L + + A + + A E + G+SP+
Sbjct: 219 ARTYRYVVRELGLEVQPADPESYVPRFASGLELSDEAEHRARSLLQNAKEKGVHSGKSPV 278
Query: 245 SVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSY 282
+AAAA+Y A+ +++K +Q + D+A ++EVTIR Y
Sbjct: 279 GLAAAAVYAAALLTNEKTTQAAVSDVADISEVTIRNRY 316
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 49/78 (62%)
Query: 208 MSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEI 267
+ R S L LPN V++ A+ I R+A+E D++PGRS V+ A +Y A++ + RS EI
Sbjct: 148 IDRMASALGLPNNVRETASVIYRRALEEDLLPGRSIEGVSTACVYAAARQAGVPRSLDEI 207
Query: 268 GDIAGVAEVTIRQSYKLM 285
D++ V + I ++Y+ +
Sbjct: 208 ADVSRVEKNEIARTYRYV 225
>gi|119873155|ref|YP_931162.1| transcription initiation factor IIB [Pyrobaculum islandicum DSM
4184]
gi|189029860|sp|A1RV37.1|TF2B_PYRIL RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|119674563|gb|ABL88819.1| Transcription initiation factor IIB (TFIIB) [Pyrobaculum islandicum
DSM 4184]
Length = 333
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 91/278 (32%), Positives = 155/278 (55%), Gaps = 12/278 (4%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLST 75
+ +Y G+ +C CG VV ++++D+G EWR F++E+ G +R G P L++ + L+T
Sbjct: 45 FVYNYERGEIVCIVCGAVVQEQLLDLGPEWRAFTSEEKG-QRARTGAPLTRLISEA-LTT 102
Query: 76 MIGPGRGDAS---------FDGFGMSKYQNR-RTMNSSDRALLNAIREINSMADRINLTK 125
+I D S + + K+Q R R S +R + A +E+ + + + +
Sbjct: 103 VIDWRDKDVSGKELDIKRKLEVIRLRKWQTRARVQTSYERNFIQAAQELERLRSSMGVPR 162
Query: 126 TIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIG 185
V++A +++Q + + ++GRS +A+A+A LY+ACR +PR E+ +K S++E+
Sbjct: 163 PCVEQALEIYRQALEKELVRGRSVEAMAAAALYMACRMMKMPRPLDELVRYTKASRREVA 222
Query: 186 RCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPIS 245
RC++L+L+ L V + ++SR L L V K A I +KA + I G+ P
Sbjct: 223 RCYRLLLRELNVKVPISDPVLYISRIAEQLKLSGEVVKTAIEILQKAKKAGITAGKDPAG 282
Query: 246 VAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
+AAAA+Y+AS D R+QK+ AGV EVT+R YK
Sbjct: 283 LAAAAVYIASLLHGDNRTQKDFAVAAGVTEVTVRNRYK 320
>gi|448706184|ref|ZP_21700953.1| transcription factor TFIIB cyclin-like protein [Halobiforma
nitratireducens JCM 10879]
gi|445794734|gb|EMA45273.1| transcription factor TFIIB cyclin-like protein [Halobiforma
nitratireducens JCM 10879]
Length = 328
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 94/278 (33%), Positives = 154/278 (55%), Gaps = 13/278 (4%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTF-SNEKSGVDPSRVGGPENPLLNGSDLS 74
L+ D G+ +C +CGLVV + +D G EWR F + EK+ + SRVG P ++ LS
Sbjct: 40 LVVDDEHGETVCEDCGLVVEEDSVDRGPEWRAFDAAEKN--EKSRVGAPTTNTMHDKGLS 97
Query: 75 TMIGPGRGDASFDGFG---------MSKYQNR-RTMNSSDRALLNAIREINSMADRINLT 124
T I DA + G + K+ R RT +S +R L A+ EI+ MA + L
Sbjct: 98 TNIDWRNKDAYGNSLGSRQREKMQRLRKWNERFRTRDSKERNLKQALGEIDRMASALGLP 157
Query: 125 KTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEI 184
+ + A+ ++++ D L GRS + ++++C+Y A RQ GVPR+ EI VS++ K EI
Sbjct: 158 NNVRETASVIYRRALDEDLLPGRSIEGVSTSCVYAAARQAGVPRSLDEIADVSRVEKNEI 217
Query: 185 GRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPI 244
R ++ +++ L V ++ RF S L L + + A + + A E + G+SP+
Sbjct: 218 ARTYRYVVRELGLEVQPADPESYVPRFASGLDLSDEAEHRARALLQNAKEKGVHSGKSPV 277
Query: 245 SVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSY 282
+AAAA+Y A+ +++K +Q + D+A ++EVTIR Y
Sbjct: 278 GLAAAAVYAAALLTNEKTTQAAVSDVADISEVTIRNRY 315
Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 49/78 (62%)
Query: 208 MSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEI 267
+ R S L LPN V++ A+ I R+A++ D++PGRS V+ + +Y A++ + RS EI
Sbjct: 147 IDRMASALGLPNNVRETASVIYRRALDEDLLPGRSIEGVSTSCVYAAARQAGVPRSLDEI 206
Query: 268 GDIAGVAEVTIRQSYKLM 285
D++ V + I ++Y+ +
Sbjct: 207 ADVSRVEKNEIARTYRYV 224
>gi|399577427|ref|ZP_10771180.1| transcription factor TFIIB cyclin-like protein [Halogranum salarium
B-1]
gi|399237810|gb|EJN58741.1| transcription factor TFIIB cyclin-like protein [Halogranum salarium
B-1]
Length = 325
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 86/271 (31%), Positives = 142/271 (52%), Gaps = 11/271 (4%)
Query: 23 GDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLSTMIGPGRG 82
GD I E GLVV + ID G EWR F + SRVG P P ++ L+T IG
Sbjct: 46 GDLIHEETGLVVEEDNIDHGPEWRAFDQSERD-QKSRVGAPTTPAMHDKGLTTEIGWRDK 104
Query: 83 DASFDGFGMSK---------YQNR-RTMNSSDRALLNAIREINSMADRINLTKTIVDRAN 132
DA+ K +Q R RT ++ +R L A+ EI+ M + + + A+
Sbjct: 105 DANGHSLSNEKRKQMNRLRTWQQRIRTNDAGERNLQFALSEIDRMVSALGAPDNVQEMAS 164
Query: 133 NLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGRCFKLIL 192
++++ D ++GRS + +A+ L+ A R E +PRT +E+ V+++ +GR ++ +
Sbjct: 165 VIYRRALDEDLIRGRSIEGVATGALHAAMRCEAIPRTLEEVSDVARVDHNRVGRAYRHLS 224
Query: 193 KALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIY 252
+ L V ++ R+CS L + ++V++ AT I E + G+SP AA+A+Y
Sbjct: 225 QELGLEVSPTDPSQYVPRYCSALDVSSLVEQKATEIVADTTEEGLHAGKSPSGFAASAVY 284
Query: 253 MASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
+AS +K +Q ++ D+A V EVTIR Y+
Sbjct: 285 LASMLCGEKETQADVADVADVTEVTIRTRYQ 315
>gi|383624782|ref|ZP_09949188.1| transcription initiation factor IIB [Halobiforma lacisalsi AJ5]
Length = 325
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 95/292 (32%), Positives = 158/292 (54%), Gaps = 17/292 (5%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTF-SNEKSGVDPSRVGGPENPLLNGSDLS 74
L+ D + +C +CGLVV + ID G EWR F + EK + SRVG P +++ LS
Sbjct: 37 LVSDAEHAETVCEDCGLVVEEDEIDRGPEWRAFDAAEKD--EKSRVGAPTTNMMHDQGLS 94
Query: 75 TMIGPGRGDASFDGFGMSKYQNR------------RTMNSSDRALLNAIREINSMADRIN 122
T IG DA G +S Q + RT +S +R L A+ EI+ MA +
Sbjct: 95 TNIGWQDKDAY--GKALSSRQRQKMQRLRTWNERFRTRDSKERNLKQALGEIDRMASALG 152
Query: 123 LTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKK 182
L + + + A+ ++++ + L GRS + +A+A LY A RQ G PR+ EI AVS++ K
Sbjct: 153 LPENVRETASVIYRRALEEDLLPGRSIEGVATASLYAAARQAGTPRSLDEISAVSRVDKM 212
Query: 183 EIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRS 242
E+ R ++ +++ L V ++ RF S+L L + ++ A + A + + G+S
Sbjct: 213 ELTRTYRYVIRELGLEVQPADPESYVPRFVSDLDLSDETERMARELLDSARKEGVHSGKS 272
Query: 243 PISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKLFP 294
P+ +AAA +Y A+ +++K +Q E+ ++A ++EVTIR YK + + P
Sbjct: 273 PVGLAAAGVYAAALLTNEKVTQNEVSEVASISEVTIRNRYKELLEASDTAAP 324
>gi|257051641|ref|YP_003129474.1| Transcription factor TFIIB cyclin-related [Halorhabdus utahensis
DSM 12940]
gi|256690404|gb|ACV10741.1| Transcription factor TFIIB cyclin-related [Halorhabdus utahensis
DSM 12940]
Length = 330
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 102/286 (35%), Positives = 155/286 (54%), Gaps = 13/286 (4%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTF-SNEKSGVDPSRVGGPENPLLNGSDLS 74
L+ D G+ +C ECGLVV + ID G EWR F + EK SRVG P +++ LS
Sbjct: 40 LVTDSERGETVCGECGLVVEEDEIDPGPEWRAFDAAEKD--QKSRVGAPTTNMMHDKGLS 97
Query: 75 TMIGPGRGDA---SFDGFGMSKYQNRRTMN-------SSDRALLNAIREINSMADRINLT 124
T IG DA S K Q RT N S +R L A+ EI+ MA + L
Sbjct: 98 TNIGWQDKDAYGNSLSSRQREKMQRLRTWNERFRTRDSKERNLKQALGEIDRMASALGLP 157
Query: 125 KTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEI 184
+ + + A+ ++++ D L GRS + +A+A LY A RQ G PR+ EI VS+I + E+
Sbjct: 158 ENVRETASVIYRRALDENLLPGRSIEGVATASLYAAARQAGNPRSLDEIERVSRIGRMEL 217
Query: 185 GRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPI 244
R ++ +++ L V ++ RF S+L L V + A + A + ++ G+SP+
Sbjct: 218 TRTYRYVVRELNLEVQPADPESYVPRFVSDLELNEEVSRRARELVDSARKEGVLSGKSPV 277
Query: 245 SVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHAS 290
+AAAAIY A+ S+++ +Q EI ++A ++EVTIR YK + S
Sbjct: 278 GIAAAAIYAAALLSNERVTQGEISEVADISEVTIRNRYKELLEAKS 323
>gi|399575499|ref|ZP_10769257.1| transcription factor TFIIB cyclin-like protein [Halogranum salarium
B-1]
gi|399239767|gb|EJN60693.1| transcription factor TFIIB cyclin-like protein [Halogranum salarium
B-1]
Length = 319
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 92/278 (33%), Positives = 155/278 (55%), Gaps = 13/278 (4%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTF-SNEKSGVDPSRVGGPENPLLNGSDLS 74
+I D G+ +C++CGLVV + +D G EWR F +NEK SRVG P ++ LS
Sbjct: 31 VITDEGHGETVCADCGLVVSEDSVDRGPEWRAFNANEKDS--KSRVGAPTTNTMHDKGLS 88
Query: 75 TMIGPGRGDASFDGFG---------MSKYQNR-RTMNSSDRALLNAIREINSMADRINLT 124
T I DA + G + K+ R RT +S +R L A+ EI+ MA + L
Sbjct: 89 TNIDWRNKDAYGNSLGSRQRQKMQRLRKWNERFRTRDSKERNLKQALGEIDRMASALGLP 148
Query: 125 KTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEI 184
+ + A+ ++++ + L GRS + +++AC+Y A R GVPR+ EI VS++ K E+
Sbjct: 149 TNVRETASVIYRRALNDNLLPGRSIEGVSTACVYAAARMAGVPRSLDEITDVSRVDKSEV 208
Query: 185 GRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPI 244
R ++ +++ L+ V ++ RF S+L L ++ A + + A E + G+SP+
Sbjct: 209 ARTYRYVVRELKLEVRPADPESYVPRFASSLGLSEETERRARQLLKNAKEKGVHSGKSPV 268
Query: 245 SVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSY 282
+AAAA+Y A+ +++K +Q + ++A ++EVTIR Y
Sbjct: 269 GLAAAAVYAAALLTNEKTTQAAVSEVADISEVTIRNRY 306
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 47/78 (60%)
Query: 208 MSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEI 267
+ R S L LP V++ A+ I R+A+ +++PGRS V+ A +Y A++ + RS EI
Sbjct: 138 IDRMASALGLPTNVRETASVIYRRALNDNLLPGRSIEGVSTACVYAAARMAGVPRSLDEI 197
Query: 268 GDIAGVAEVTIRQSYKLM 285
D++ V + + ++Y+ +
Sbjct: 198 TDVSRVDKSEVARTYRYV 215
>gi|448299195|ref|ZP_21489208.1| transcription factor TFIIB cyclin-like protein [Natronorubrum
tibetense GA33]
gi|445588729|gb|ELY42971.1| transcription factor TFIIB cyclin-like protein [Natronorubrum
tibetense GA33]
Length = 326
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 94/278 (33%), Positives = 154/278 (55%), Gaps = 13/278 (4%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTF-SNEKSGVDPSRVGGPENPLLNGSDLS 74
L+ D G+ +C +CGLVV + +D G EWR F + EK+ + SRVG P ++ LS
Sbjct: 38 LVVDDEHGETVCEDCGLVVEEDSVDRGPEWRAFDAAEKN--EKSRVGAPTTNTMHDKGLS 95
Query: 75 TMIGPGRGDASFDGFG---------MSKYQNR-RTMNSSDRALLNAIREINSMADRINLT 124
T I DA + G + K+ R RT +S +R L A+ EI+ MA + L
Sbjct: 96 TNIDWRNKDAYGNSLGSRQREKMQRLRKWNERFRTRDSKERNLKQALGEIDRMASALGLP 155
Query: 125 KTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEI 184
+ + A+ ++++ D L GRS + ++++C+Y A RQ GVPR+ EI VS++ K EI
Sbjct: 156 TNVRETASVIYRRALDEDLLPGRSIEGVSTSCVYAAARQAGVPRSLDEIADVSRVEKNEI 215
Query: 185 GRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPI 244
R ++ +++ L V ++ RF S L L + + A + + A E + G+SP+
Sbjct: 216 ARTYRYVVRELGLEVQPADPESYVPRFASGLDLSDEAEHRARGLLQNAKEKGVHSGKSPV 275
Query: 245 SVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSY 282
+AAAA+Y A+ +++K +Q + D+A ++EVTIR Y
Sbjct: 276 GLAAAAVYAAALLTNEKTTQAAVSDVADISEVTIRNRY 313
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 48/78 (61%)
Query: 208 MSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEI 267
+ R S L LP V++ A+ I R+A++ D++PGRS V+ + +Y A++ + RS EI
Sbjct: 145 IDRMASALGLPTNVRETASVIYRRALDEDLLPGRSIEGVSTSCVYAAARQAGVPRSLDEI 204
Query: 268 GDIAGVAEVTIRQSYKLM 285
D++ V + I ++Y+ +
Sbjct: 205 ADVSRVEKNEIARTYRYV 222
>gi|167045079|gb|ABZ09742.1| putative transcription factor TFIIB repeat [uncultured marine
crenarchaeote HF4000_APKG8I13]
Length = 304
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 83/286 (29%), Positives = 160/286 (55%), Gaps = 11/286 (3%)
Query: 8 CYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPL 67
C L+ D +G+ CS+CG V+ +++ + G EWR+F+ ++ G D +R G P +
Sbjct: 12 CPRCAKGKLVTDNESGETFCSKCGFVLTEKLQEAGPEWRSFTQDEHG-DRARAGAPTSLT 70
Query: 68 LNGSDLSTMIGPGRGDAS---FDGFGMSKYQNRRTMNSS-------DRALLNAIREINSM 117
++ L+T+I P DAS S + RT +S DR A E+N +
Sbjct: 71 MHDMGLATIINPANKDASGRPLTSTMKSTIERLRTWDSRSQVHEPVDRNFRQAFSELNRL 130
Query: 118 ADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVS 177
D+++++ ++++A ++++ D ++GRS A+ ++ LY ACR PR K++ +
Sbjct: 131 KDKLSISDAVIEKAAYIYRKALDKGLVRGRSISALMASALYAACRDTSTPRNLKDVEQAA 190
Query: 178 KISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDI 237
I +K+I RC++L++K L+ + + + ++R S + + ++ AT + ++A E ++
Sbjct: 191 NIKRKDIARCYRLLVKELDLHMPVTDSVQCVARIASKIGIQEKTKRFATKVLKRAQENEV 250
Query: 238 VPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
G+ P+ +AAAA+Y+A + + ++Q++I + A V EVTIR YK
Sbjct: 251 SAGKDPMGLAAAALYLACVKNGEDKTQRDIAEAANVTEVTIRNRYK 296
Score = 44.3 bits (103), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 53/101 (52%), Gaps = 8/101 (7%)
Query: 208 MSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEI 267
++R LS+ + V + A +I RKA++ +V GRS ++ A+A+Y A + +S R+ K++
Sbjct: 127 LNRLKDKLSISDAVIEKAAYIYRKALDKGLVRGRSISALMASALYAACRDTSTPRNLKDV 186
Query: 268 GDIAGVAEVTIRQSYKLMYPHASKLFPQDFVFHTPIHELPQ 308
A + I + Y+L+ ++ H P+ + Q
Sbjct: 187 EQAANIKRKDIARCYRLLV--------KELDLHMPVTDSVQ 219
>gi|448308488|ref|ZP_21498365.1| Transcription factor TFIIB cyclin-related protein [Natronorubrum
bangense JCM 10635]
gi|445593776|gb|ELY47945.1| Transcription factor TFIIB cyclin-related protein [Natronorubrum
bangense JCM 10635]
Length = 326
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 95/278 (34%), Positives = 154/278 (55%), Gaps = 13/278 (4%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTF-SNEKSGVDPSRVGGPENPLLNGSDLS 74
L+ D G+ IC +CGLVV + +D G EWR F + EK+ + SRVG P ++ LS
Sbjct: 38 LVVDDEHGETICEDCGLVVEEDSVDRGPEWRAFDAAEKN--EKSRVGAPTTNTMHDKGLS 95
Query: 75 TMIGPGRGDASFDGFG---------MSKYQNR-RTMNSSDRALLNAIREINSMADRINLT 124
T I DA + G + K+ R RT +S +R L A+ EI+ MA + L
Sbjct: 96 TNIDWRNKDAYGNSLGSRQREKMQRLRKWNERFRTRDSKERNLKQALGEIDRMASALGLP 155
Query: 125 KTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEI 184
+ + A+ ++++ + L GRS + +++AC+Y A RQ GVPR+ EI VS++ K EI
Sbjct: 156 TNVRETASVIYRRALNEDLLPGRSIEGVSTACVYAAARQAGVPRSLDEIADVSRVEKNEI 215
Query: 185 GRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPI 244
R ++ +++ L V ++ RF S L L + + A + + A E + G+SP+
Sbjct: 216 ARTYRYVVRELGLEVQPADPESYVPRFASGLDLSDEAEHRARGLLQNAKEKGVHSGKSPV 275
Query: 245 SVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSY 282
+AAAA+Y A+ +++K +Q + D+A ++EVTIR Y
Sbjct: 276 GLAAAAVYAAALLTNEKTTQAAVSDVADISEVTIRNRY 313
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 47/78 (60%)
Query: 208 MSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEI 267
+ R S L LP V++ A+ I R+A+ D++PGRS V+ A +Y A++ + RS EI
Sbjct: 145 IDRMASALGLPTNVRETASVIYRRALNEDLLPGRSIEGVSTACVYAAARQAGVPRSLDEI 204
Query: 268 GDIAGVAEVTIRQSYKLM 285
D++ V + I ++Y+ +
Sbjct: 205 ADVSRVEKNEIARTYRYV 222
>gi|18312777|ref|NP_559444.1| transcription initiation factor IIB [Pyrobaculum aerophilum str.
IM2]
gi|21363011|sp|Q8ZWS3.1|TF2B_PYRAE RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|18160260|gb|AAL63626.1| transcription initiation factor IIB (TFIIB) [Pyrobaculum aerophilum
str. IM2]
Length = 333
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 90/278 (32%), Positives = 155/278 (55%), Gaps = 12/278 (4%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLST 75
+ +Y G+ +C CG VV ++++D+G EWR F++E+ G +R G P L++ + L+T
Sbjct: 45 FVYNYERGEAVCIVCGAVVQEQLLDLGPEWRAFTSEEKG-QRARTGAPLTRLISEA-LTT 102
Query: 76 MIGPGRGDAS---------FDGFGMSKYQNR-RTMNSSDRALLNAIREINSMADRINLTK 125
+I D S + + K+Q R R S +R + A +E+ + + + +
Sbjct: 103 VIDWRDKDVSGKELDIKRKLEVIRLRKWQTRARVQTSYERNFIQAAQELERLRSAMGIPR 162
Query: 126 TIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIG 185
+++A +++Q + + ++GRS +A+A+A LY+ACR +PR E+ +K S++E+
Sbjct: 163 PCIEQALEIYRQALEKELVRGRSVEAMAAAALYMACRMMKMPRPLDELVRYTKASRREVA 222
Query: 186 RCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPIS 245
RC++L+L+ L V + ++SR L L V K A I +KA + I G+ P
Sbjct: 223 RCYRLLLRELNVKVPISDPILYISRIAEQLKLSGEVVKTAIDILQKAKKAGITAGKDPAG 282
Query: 246 VAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
+AAAA+Y+AS D R+QK+ AGV EVT+R YK
Sbjct: 283 LAAAAVYIASLMHGDNRTQKDFAVAAGVTEVTVRNRYK 320
>gi|389852789|ref|YP_006355023.1| transcription initiation factor IIB [Pyrococcus sp. ST04]
gi|388250095|gb|AFK22948.1| transcription initiation factor IIB [Pyrococcus sp. ST04]
Length = 261
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 83/249 (33%), Positives = 141/249 (56%), Gaps = 7/249 (2%)
Query: 41 VGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLSTMIGPGR---GDASFDGFGMSKYQNR 97
+G EWR F + SR G PE+ LL+ LST IG R G + + K+Q+R
Sbjct: 1 MGPEWRAFDASQRE-RRSRTGAPESILLHDKGLSTDIGIDRSLTGLMREKMYRLRKWQSR 59
Query: 98 -RTMNSSDRALLNAIREINSMADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASAC 156
R ++++R L A+ E++ + ++ L K + + A L+++ ++GRS +++ +AC
Sbjct: 60 LRVSDAAERNLAFALSELDRITSQLKLPKHVEEEAARLYREAVRKGLIRGRSIESVIAAC 119
Query: 157 LYIACRQEGVPRTFKEICAVSKISKKEIGRCFKLILKALETSVD--LITTGDFMSRFCSN 214
+Y ACR VPRT EI ++++ KKEIGR ++ I + L + + D++++F
Sbjct: 120 VYAACRLLKVPRTLDEISDIARVEKKEIGRSYRFIARNLNLTPKKLFVKPTDYVNKFADE 179
Query: 215 LSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVA 274
L L V++ A I +A + G+SP + AAA+Y+AS +KR+Q+E+ ++A V
Sbjct: 180 LGLSEKVRRRAIEILEEAYRRGLTSGKSPAGLVAAALYIASLLEGEKRTQREVAEVARVT 239
Query: 275 EVTIRQSYK 283
EVT+R YK
Sbjct: 240 EVTVRNRYK 248
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/97 (36%), Positives = 52/97 (53%), Gaps = 6/97 (6%)
Query: 208 MSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEI 267
+ R S L LP V++ A + R+AV ++ GRS SV AA +Y A + R+ EI
Sbjct: 77 LDRITSQLKLPKHVEEEAARLYREAVRKGLIRGRSIESVIAACVYAACRLLKVPRTLDEI 136
Query: 268 GDIAGVAEVTIRQSYKLMYPHAS----KLF--PQDFV 298
DIA V + I +SY+ + + + KLF P D+V
Sbjct: 137 SDIARVEKKEIGRSYRFIARNLNLTPKKLFVKPTDYV 173
Score = 42.4 bits (98), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 47/88 (53%)
Query: 114 INSMADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEI 173
+N AD + L++ + RA + ++ + G+S + +A LYIA EG RT +E+
Sbjct: 173 VNKFADELGLSEKVRRRAIEILEEAYRRGLTSGKSPAGLVAAALYIASLLEGEKRTQREV 232
Query: 174 CAVSKISKKEIGRCFKLILKALETSVDL 201
V+++++ + +K +++ L V +
Sbjct: 233 AEVARVTEVTVRNRYKELVEKLGIKVPM 260
>gi|448355612|ref|ZP_21544362.1| transcription factor TFIIB cyclin-like protein [Natrialba
hulunbeirensis JCM 10989]
gi|445634733|gb|ELY87908.1| transcription factor TFIIB cyclin-like protein [Natrialba
hulunbeirensis JCM 10989]
Length = 317
Score = 148 bits (374), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 92/278 (33%), Positives = 153/278 (55%), Gaps = 11/278 (3%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLST 75
+I D G+++C ECGLV+ + ID G EWR F N + + SRVG P ++ L+T
Sbjct: 29 VIHDPDRGERVCGECGLVLTEDPIDYGPEWRAF-NAQEHDELSRVGAPLTQSMHDRGLTT 87
Query: 76 MIGPGRGDA-----SFDGFG----MSKYQNR-RTMNSSDRALLNAIREINSMADRINLTK 125
I DA S D G + +Q R RT N+ +R L A+ EI+ M + + K
Sbjct: 88 TIDWRNKDANGHSMSADKHGQLHRLRVWQERIRTKNAGERNLKYALSEIDRMVSALGVPK 147
Query: 126 TIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIG 185
+ + A+ ++++ + ++GRS + +A++ LY ACR+EG+PR+ +E+ +VS++ ++EIG
Sbjct: 148 PVKETASVIYRRALEQDLIRGRSIEGVATSALYTACRKEGIPRSLEEVTSVSRVDQREIG 207
Query: 186 RCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPIS 245
R ++ I L+ +++ F+ RFCS L + V+ A I + +L + G+SP
Sbjct: 208 RTYRYIADELDINLEPTNPRQFVPRFCSELDVSKEVETRAVEIIDQTTDLGLHSGKSPTG 267
Query: 246 VAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
AAAAIY A + Q+ + D A VT+R Y+
Sbjct: 268 FAAAAIYAAGLLCDETIPQRAVADTAQTTVVTVRNRYR 305
>gi|374325545|ref|YP_005083742.1| Transcription factor TFIIB [Pyrobaculum sp. 1860]
gi|356640811|gb|AET31490.1| Transcription factor TFIIB [Pyrobaculum sp. 1860]
Length = 333
Score = 148 bits (374), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 90/278 (32%), Positives = 156/278 (56%), Gaps = 12/278 (4%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLST 75
+ +Y G+ +C CG VV ++++D+G EWR F++E+ G +R G P L++ + L+T
Sbjct: 45 FVYNYEKGEVVCIVCGAVVQEQLLDLGPEWRAFTSEEKG-QRARTGAPLTRLISEA-LTT 102
Query: 76 MIGPGRGDAS---------FDGFGMSKYQNR-RTMNSSDRALLNAIREINSMADRINLTK 125
+I D S + + K+Q R R S +R + A +E+ + + + +
Sbjct: 103 VIDWRDKDVSGKELDIKRKLEVIRLRKWQTRARVQTSYERNFIQAAQELERLRSSMGIPR 162
Query: 126 TIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIG 185
+++A +++Q + + ++GRS +A+A+A LY+ACR +PR E+ +K S++E+
Sbjct: 163 PCIEQALEIYRQALEKELVRGRSVEAMAAAALYMACRMMKMPRPLDELVRYTKASRREVA 222
Query: 186 RCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPIS 245
RC++L+L+ L V + ++SR L L V K+A I +KA + I G+ P
Sbjct: 223 RCYRLLLRELNVKVPISDPILYISRIAEQLKLSGEVIKSAIDILQKAKKAGITAGKDPAG 282
Query: 246 VAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
+AAAA+Y+AS D R+QK+ AGV EVT+R YK
Sbjct: 283 LAAAAVYIASLMHGDNRTQKDFAVAAGVTEVTVRNRYK 320
>gi|448608903|ref|ZP_21660182.1| transcription initiation factor TFB [Haloferax mucosum ATCC
BAA-1512]
gi|445747280|gb|ELZ98736.1| transcription initiation factor TFB [Haloferax mucosum ATCC
BAA-1512]
Length = 331
Score = 148 bits (374), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 95/283 (33%), Positives = 156/283 (55%), Gaps = 17/283 (6%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTF-SNEKSGVDPSRVGGPENPLLNGSDLS 74
LI D G+ +C ECGLVV D ++D G EWR F ++E+ SRVG P +++ LS
Sbjct: 43 LIHDDDHGETVCQECGLVVEDTIVDRGPEWRAFDASERDS--KSRVGAPTTKMMHDKGLS 100
Query: 75 TMIGPGRGDASFDGFGMSKYQNR------------RTMNSSDRALLNAIREINSMADRIN 122
T IG DA G +S Q RT +S +R L A+ EI+ MA +
Sbjct: 101 TNIGWQNKDAY--GKSLSPRQREQMQRLRTWNERFRTRDSKERNLKQALGEIDRMASALG 158
Query: 123 LTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKK 182
L + + + A+ ++++ + L GRS + +A+A LY A R PR+ E+ VS++ K
Sbjct: 159 LPENVRETASVIYRRALNDDLLPGRSIEGVATAALYGAARMADTPRSLDELEKVSRVDKM 218
Query: 183 EIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRS 242
E+ R ++ I++ L+ + ++ RF S L L + ++ A + R A E I G+S
Sbjct: 219 ELTRTYRYIVRELKLEIKPADPEQYVPRFASELDLSDEAERQARTLLRDAKETGIHSGKS 278
Query: 243 PISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLM 285
P+ +AAAA+Y A+ +++K +Q ++ ++A ++EVTIR YK +
Sbjct: 279 PVGLAAAAVYAAALLTNEKVTQSQVSEVADISEVTIRNRYKEL 321
>gi|448348503|ref|ZP_21537352.1| transcription factor TFIIB cyclin-like protein [Natrialba
taiwanensis DSM 12281]
gi|445642870|gb|ELY95932.1| transcription factor TFIIB cyclin-like protein [Natrialba
taiwanensis DSM 12281]
Length = 360
Score = 148 bits (374), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 94/289 (32%), Positives = 154/289 (53%), Gaps = 11/289 (3%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLST 75
LI D + +C +CGLVV + ID G EWR F + + SRVG P +++ LST
Sbjct: 72 LITDDEHAETVCEDCGLVVEEDEIDRGPEWRAFDAAEKD-EKSRVGAPTTNMMHDQGLST 130
Query: 76 MIGPGRGDA---SFDGFGMSKYQNRRTMN-------SSDRALLNAIREINSMADRINLTK 125
IG DA S K Q RT N S +R L A+ EI+ MA + L +
Sbjct: 131 NIGWQDKDAYGKSLSSRQRQKMQRLRTWNERFRTRDSKERNLKQALGEIDRMASALGLPE 190
Query: 126 TIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIG 185
+ + A+ ++++ + L GRS + +A++ LY + RQ G PR+ EI AVS++ K E+
Sbjct: 191 NVRETASVIYRRALEEDLLPGRSIEGVATSSLYASARQAGTPRSLDEISAVSRVDKMELT 250
Query: 186 RCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPIS 245
R ++ I++ L V ++ RF S+L L + ++ A + A + + G+SP+
Sbjct: 251 RTYRYIIRELGLEVKPADPEHYVPRFVSDLDLSDETERMARELLESARQEGVHSGKSPVG 310
Query: 246 VAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKLFP 294
+AAA +Y A+ +++K +Q E+ ++A ++EVTIR YK + + P
Sbjct: 311 LAAAGVYAAALLTNEKVTQNEVSEVASISEVTIRNRYKELLEASDTAAP 359
>gi|284165712|ref|YP_003403991.1| transcription factor TFIIB cyclin-related protein [Haloterrigena
turkmenica DSM 5511]
gi|284015367|gb|ADB61318.1| Transcription factor TFIIB cyclin-related protein [Haloterrigena
turkmenica DSM 5511]
Length = 323
Score = 148 bits (374), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 96/292 (32%), Positives = 159/292 (54%), Gaps = 17/292 (5%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTF-SNEKSGVDPSRVGGPENPLLNGSDLS 74
+I D + +C +CGLVV + ID G EWR F + EK + SRVG P +++ LS
Sbjct: 35 VISDAEHAETVCEDCGLVVEEDEIDRGPEWRAFDAAEKD--EKSRVGAPTTNMMHDQGLS 92
Query: 75 TMIGPGRGDASFDGFGMSKYQNR------------RTMNSSDRALLNAIREINSMADRIN 122
T IG DA G +S Q + RT +S +R L A+ EI+ MA +
Sbjct: 93 TNIGWQDKDAY--GRALSSRQRQKMQRLRTWNERFRTRDSKERNLKQALGEIDRMASALG 150
Query: 123 LTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKK 182
L + + + A+ ++++ + L GRS + +A+A LY A RQ G PR+ EI AVS++ K
Sbjct: 151 LPENVRETASVIYRRALEEDLLPGRSIEGVATASLYAAARQAGTPRSLDEISAVSRVEKM 210
Query: 183 EIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRS 242
E+ R ++ I++ L V ++ RF S+L L + ++ A + A + + G+S
Sbjct: 211 ELTRTYRYIIRELGLEVKPADPEHYVPRFVSDLDLSDETERMARELLESARQEGVHSGKS 270
Query: 243 PISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKLFP 294
P+ +AAAA+Y A+ +++K +Q ++ ++A ++EVTIR YK + + P
Sbjct: 271 PVGLAAAAVYAAALLTNEKVTQNDVSEVASISEVTIRNRYKELLEASDTAAP 322
>gi|313127213|ref|YP_004037483.1| transcription initiation factor iib (tfiib) [Halogeometricum
borinquense DSM 11551]
gi|448288315|ref|ZP_21479515.1| transcription initiation factor iib (tfiib) [Halogeometricum
borinquense DSM 11551]
gi|312293578|gb|ADQ68038.1| Transcription initiation factor IIB (TFIIB) [Halogeometricum
borinquense DSM 11551]
gi|445569834|gb|ELY24404.1| transcription initiation factor iib (tfiib) [Halogeometricum
borinquense DSM 11551]
Length = 327
Score = 148 bits (374), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 93/271 (34%), Positives = 149/271 (54%), Gaps = 11/271 (4%)
Query: 23 GDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLSTMIGPGRG 82
G+ I G+VV + ID G EWR F N SRVG P ++ L+T I
Sbjct: 48 GELIHEPTGIVVEEEQIDPGPEWRAF-NHSERQSKSRVGAPTTQTMHDKGLTTTIDWKDK 106
Query: 83 DASFDGFG---------MSKYQNR-RTMNSSDRALLNAIREINSMADRINLTKTIVDRAN 132
DA + K+Q R RT ++ +R L A+ EI+ MA + + +++ + A+
Sbjct: 107 DAYGRSISSRKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDRMASALGVPRSVREVAS 166
Query: 133 NLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGRCFKLIL 192
++++ + ++GRS + +A++ LY ACR+EG+PR+ +EI VS++ +KEIGR ++ I
Sbjct: 167 VIYRRALNEDLIRGRSIEGVATSALYAACRKEGIPRSLEEISDVSRVERKEIGRTYRYIS 226
Query: 193 KALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIY 252
+ L + + ++ RF S L L VQ A I E ++ G+SP AAAAIY
Sbjct: 227 QELGLEMKPVDPKKYVPRFSSELDLSKEVQSKANEIIETTAEKGLLSGKSPTGYAAAAIY 286
Query: 253 MASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
AS ++K++Q+E+ D+A V EVTIR Y+
Sbjct: 287 AASLLCNEKKTQREVADVAQVTEVTIRNRYQ 317
>gi|289582685|ref|YP_003481151.1| transcription factor TFIIB cyclin-like protein [Natrialba magadii
ATCC 43099]
gi|448281888|ref|ZP_21473181.1| transcription factor TFIIB cyclin-like protein [Natrialba magadii
ATCC 43099]
gi|289532238|gb|ADD06589.1| Transcription factor TFIIB cyclin-related protein [Natrialba
magadii ATCC 43099]
gi|445577517|gb|ELY31950.1| transcription factor TFIIB cyclin-like protein [Natrialba magadii
ATCC 43099]
Length = 317
Score = 148 bits (373), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 91/278 (32%), Positives = 153/278 (55%), Gaps = 11/278 (3%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLST 75
++ D G+++C ECGLV+ + ID G EWR F N + + SRVG P ++ L+T
Sbjct: 29 IVHDPDRGERVCGECGLVLTEDPIDYGPEWRAF-NAQEHDELSRVGAPLTQSMHDRGLTT 87
Query: 76 MIGPGRGDA-----SFDGFG----MSKYQNR-RTMNSSDRALLNAIREINSMADRINLTK 125
I DA S D G + +Q R RT N+ +R L A+ EI+ M + + K
Sbjct: 88 TIDWRNKDANGRSMSADKHGQLHRLRVWQERIRTKNAGERNLKYALSEIDRMVSALGVPK 147
Query: 126 TIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIG 185
+ + A+ ++++ + ++GRS + +A++ LY ACR+EG+PR+ +E+ +VS++ ++EIG
Sbjct: 148 PVKETASVIYRRALEQDLIRGRSIEGVATSALYTACRKEGIPRSLEEVTSVSRVDQREIG 207
Query: 186 RCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPIS 245
R ++ I L+ +++ F+ RFCS L + V+ A I + +L + G+SP
Sbjct: 208 RTYRYIADELDINLEPTNPRQFVPRFCSELDVSKEVETRAVEIIDQTTDLGLHSGKSPTG 267
Query: 246 VAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
AAAAIY A + Q+ + D A VT+R Y+
Sbjct: 268 FAAAAIYAAGLLCDETIPQRAVADTAQTTVVTVRNRYR 305
>gi|435848670|ref|YP_007310920.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natronococcus occultus SP4]
gi|433674938|gb|AGB39130.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natronococcus occultus SP4]
Length = 319
Score = 148 bits (373), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 92/278 (33%), Positives = 151/278 (54%), Gaps = 11/278 (3%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLST 75
++ D G+++C ECGLV+ + ID G EWR F N + + SRVG P ++ L+T
Sbjct: 31 IVHDPDRGERVCEECGLVLTEDPIDYGPEWRAF-NAQEHDELSRVGAPLTQSMHDRGLTT 89
Query: 76 MIGPGRGDA-----SFDGFG----MSKYQNR-RTMNSSDRALLNAIREINSMADRINLTK 125
I DA S D G + +Q R RT N+ +R L A+ EI+ M + + K
Sbjct: 90 TIDWRNRDANGHSMSADKHGQLHRLRVWQERIRTKNAGERNLKYALSEIDRMVSALGVPK 149
Query: 126 TIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIG 185
+ + A+ +++Q D ++GRS + +A++ LY ACR+EG+PR+ +E+ AVS++ ++EIG
Sbjct: 150 PVKETASVIYRQALDQDLIRGRSIEGVATSALYTACRKEGIPRSLEEVTAVSRVDQREIG 209
Query: 186 RCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPIS 245
R ++ + L+ +++ F+ RFCS L + V+ A I + + G+SP
Sbjct: 210 RTYRYVADELDINLEPTNPRQFVPRFCSELDVDKDVESKAIEIIDETTNQGLHSGKSPTG 269
Query: 246 VAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
AAAAIY A + Q+ + D A VT+R Y+
Sbjct: 270 FAAAAIYAAGLLCEETIPQRAVADTAQTTVVTVRNRYR 307
>gi|395324790|gb|EJF57224.1| hypothetical protein DICSQDRAFT_92561 [Dichomitus squalens LYAD-421
SS1]
Length = 359
Score = 148 bits (373), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 105/320 (32%), Positives = 163/320 (50%), Gaps = 35/320 (10%)
Query: 1 MNINKVC--CYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPS 58
+ + +C C E+P ++E++R GD +C CGLV+ DR+ID SEWR F++ S
Sbjct: 25 LAVRLICRDCQEYP-PNIVEEFRDGDLVCGSCGLVLSDRIIDTRSEWREFTSTHSDETTH 83
Query: 59 ---RVGGPENPLLNGSD-LSTMIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREI 114
RVG ++ L G + L+T I G + Q ++ S+R + A R+I
Sbjct: 84 AHCRVGQVQDRLGVGLEHLATTISVDSGSSISQDLRRVARQAE-NLSPSERRVRQAFRDI 142
Query: 115 NSMADRINLTKTIVDRANNLFKQVHDGKN-----LKGRSN-DAIASACLYIACRQEGVPR 168
+ M RI L T++D L+ ++ D +N L+ R+ +A AC +IACRQ VPR
Sbjct: 143 DDMCARIQLPNTVLDITKQLYWRI-DQENIRPSRLRSRAQYEATLGACFFIACRQARVPR 201
Query: 169 TFKEICAVSKISKKEIGRCFKLILKALETSVDL---ITTG-------------DFMSRFC 212
TF EIC V+ + K++IGR ++ LE +L T G D + R+C
Sbjct: 202 TFIEICQVTSVDKQDIGRAYR----ELEQKFNLRSGSTVGYDEESGAYEGGPQDLLVRYC 257
Query: 213 SNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAG 272
+ L LP V +T + K EL+ RSP ++A AI+ AS R+ ++IG +AG
Sbjct: 258 NYLGLPQSVVSVSTDVVVKLRELETPTSRSPPTIAGGAIFFASHLLGHPRNFQQIGKVAG 317
Query: 273 VAEVTIRQSYKLMYPHASKL 292
+ V++ YK +Y KL
Sbjct: 318 MKGVSMAVLYKTLYDLKDKL 337
>gi|344212646|ref|YP_004796966.1| transcription initiation factor IIB [Haloarcula hispanica ATCC
33960]
gi|448631082|ref|ZP_21673537.1| transcription initiation factor IIB [Haloarcula vallismortis ATCC
29715]
gi|448671125|ref|ZP_21687117.1| transcription initiation factor IIB [Haloarcula amylolytica JCM
13557]
gi|343784001|gb|AEM57978.1| transcription initiation factor IIB [Haloarcula hispanica ATCC
33960]
gi|445755456|gb|EMA06846.1| transcription initiation factor IIB [Haloarcula vallismortis ATCC
29715]
gi|445766207|gb|EMA17341.1| transcription initiation factor IIB [Haloarcula amylolytica JCM
13557]
Length = 321
Score = 148 bits (373), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 94/278 (33%), Positives = 154/278 (55%), Gaps = 13/278 (4%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTF-SNEKSGVDPSRVGGPENPLLNGSDLS 74
L+ D G+ +C +CGLVV ID G EWR F S+EK + SRVG P +++ LS
Sbjct: 33 LVIDDEHGETVCEDCGLVVESDEIDRGPEWRAFDSSEKD--EKSRVGAPTTNMMHDKGLS 90
Query: 75 TMIGPGRGDASFDGFG---------MSKYQNR-RTMNSSDRALLNAIREINSMADRINLT 124
T I DA + + K+ R RT +S +R L A+ EI+ MA + L
Sbjct: 91 TNIDWRDKDAYGNSLSGKQRQKMQRLRKWNERFRTRDSKERNLKQALGEIDRMASALGLP 150
Query: 125 KTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEI 184
+ + + A+ ++++ D L GRS + +++A +Y A RQ GVPR+ EI VS++ K EI
Sbjct: 151 ENVRETASVIYRRALDEDLLPGRSIEGVSTASVYAAARQAGVPRSLDEITEVSRVEKSEI 210
Query: 185 GRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPI 244
R ++ +++ L V ++ RF S+L L + + A + + A E + G+SP+
Sbjct: 211 ARTYRYVVRELSLEVRPADPESYVPRFASSLELSDEAEHRARQLLQNAKEQGVHSGKSPV 270
Query: 245 SVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSY 282
+AAAA+Y A+ +++K +Q + ++A ++EVTIR Y
Sbjct: 271 GLAAAAVYAAALLTNEKTTQAAVSEVADISEVTIRNRY 308
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 56/96 (58%), Gaps = 1/96 (1%)
Query: 208 MSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEI 267
+ R S L LP V++ A+ I R+A++ D++PGRS V+ A++Y A++ + RS EI
Sbjct: 140 IDRMASALGLPENVRETASVIYRRALDEDLLPGRSIEGVSTASVYAAARQAGVPRSLDEI 199
Query: 268 GDIAGVAEVTIRQSYKLMYPHAS-KLFPQDFVFHTP 302
+++ V + I ++Y+ + S ++ P D + P
Sbjct: 200 TEVSRVEKSEIARTYRYVVRELSLEVRPADPESYVP 235
>gi|399574277|ref|ZP_10768036.1| transcription initiation factor iib (tfiib) [Halogranum salarium
B-1]
gi|399240109|gb|EJN61034.1| transcription initiation factor iib (tfiib) [Halogranum salarium
B-1]
Length = 324
Score = 148 bits (373), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 92/288 (31%), Positives = 157/288 (54%), Gaps = 11/288 (3%)
Query: 13 DAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSD 72
D L+ D G+ +C +CGLVV + +D G EWR F + + SRVG P +++
Sbjct: 33 DGRLLTDEEHGELVCGDCGLVVEEANVDRGPEWRAFDSAERD-SKSRVGAPTTKMMHDKG 91
Query: 73 LSTMIGPGRGDASFDGFG---------MSKYQNR-RTMNSSDRALLNAIREINSMADRIN 122
LST IG DA + + R RT +S +R L A+ EI+ MA +
Sbjct: 92 LSTNIGWQDKDAYGKTLSSRQRQQMQRLRTWNERFRTRDSKERNLKQALGEIDRMASALG 151
Query: 123 LTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKK 182
L + + + A+ ++++ L GRS + +A+A LY + RQ G PR+ EI +VS++ K
Sbjct: 152 LPQAVRETASVIYRRALAEDLLPGRSIEGVATAALYASARQAGTPRSLDEIASVSRVDKM 211
Query: 183 EIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRS 242
E+ R ++ +++ L+ + ++ RF S+L L + ++ A + R A E I G+S
Sbjct: 212 ELTRTYRYVVRELKLEIQPADPEQYVPRFASDLGLSDEAERRARELLRTAKEAGIHSGKS 271
Query: 243 PISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHAS 290
P+ +AAAA+Y A+ +++K +Q ++ +A ++EVTIR YK + A+
Sbjct: 272 PVGLAAAAVYAAALLTNEKVTQSQVSSVANISEVTIRNRYKELLEAAN 319
>gi|448419740|ref|ZP_21580584.1| transcription initiation factor iib (tfiib) [Halosarcina pallida
JCM 14848]
gi|445674654|gb|ELZ27191.1| transcription initiation factor iib (tfiib) [Halosarcina pallida
JCM 14848]
Length = 334
Score = 148 bits (373), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 93/271 (34%), Positives = 149/271 (54%), Gaps = 11/271 (4%)
Query: 23 GDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLSTMIGPGRG 82
G+ I G+VV + ID G EWR F N SRVG P ++ L+T I
Sbjct: 55 GELIHEPTGIVVEEEQIDPGPEWRAF-NHSERQSKSRVGAPTTQTMHDKGLTTTIDWKDK 113
Query: 83 DASFDGFG---------MSKYQNR-RTMNSSDRALLNAIREINSMADRINLTKTIVDRAN 132
DA + K+Q R RT ++ +R L A+ EI+ MA + + +++ + A+
Sbjct: 114 DAYGRSISSRKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDRMASALGVPRSVREVAS 173
Query: 133 NLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGRCFKLIL 192
++++ + ++GRS + +A++ LY ACR+EG+PR+ +EI VS++ +KEIGR ++ I
Sbjct: 174 VIYRRALNEDLIRGRSIEGVATSALYAACRKEGIPRSLEEISDVSRVERKEIGRTYRYIS 233
Query: 193 KALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIY 252
+ L + + ++ RF S L L VQ A I E ++ G+SP AAAAIY
Sbjct: 234 QELGLEMKPVDPKKYVPRFSSELELSKEVQSKANEIIETTAEKGLLSGKSPTGYAAAAIY 293
Query: 253 MASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
AS ++K++Q+E+ D+A V EVTIR Y+
Sbjct: 294 AASLLCNEKKTQREVADVAQVTEVTIRNRYQ 324
>gi|45954|emb|CAA50006.1| transcription factor IIB [Pyrococcus woesei]
Length = 261
Score = 148 bits (373), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 83/252 (32%), Positives = 143/252 (56%), Gaps = 13/252 (5%)
Query: 41 VGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLSTMIGPGRGDASFDG------FGMSKY 94
+G EWR F + SR G PE+ LL+ LST IG D S G + + K+
Sbjct: 1 MGPEWRAFDASQRE-RRSRTGAPESILLHDKGLSTEIGI---DRSLSGLMREKMYRLRKW 56
Query: 95 QNR-RTMNSSDRALLNAIREINSMADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIA 153
Q+R R ++++R L A+ E++ + ++ L + + + A L+++ ++GRS +++
Sbjct: 57 QSRLRVSDAAERNLAFALSELDRITAQLKLPRHVEEEAARLYREAVRKGLIRGRSIESVM 116
Query: 154 SACLYIACRQEGVPRTFKEICAVSKISKKEIGRCFKLILKALETSVD--LITTGDFMSRF 211
+AC+Y ACR VPRT EI ++++ KKEIGR ++ I + L + + D++++F
Sbjct: 117 AACVYAACRLLKVPRTLDEIADIARVDKKEIGRSYRFIARNLNLTPKKLFVKPTDYVNKF 176
Query: 212 CSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIA 271
L L V++ A I +A + + G+SP + AAA+Y+AS +KR+Q+E+ ++A
Sbjct: 177 ADELGLSEKVRRRAIEILDEAYKRGLTSGKSPAGLVAAALYIASLLEGEKRTQREVAEVA 236
Query: 272 GVAEVTIRQSYK 283
V EVT+R YK
Sbjct: 237 RVTEVTVRNRYK 248
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 52/97 (53%), Gaps = 6/97 (6%)
Query: 208 MSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEI 267
+ R + L LP V++ A + R+AV ++ GRS SV AA +Y A + R+ EI
Sbjct: 77 LDRITAQLKLPRHVEEEAARLYREAVRKGLIRGRSIESVMAACVYAACRLLKVPRTLDEI 136
Query: 268 GDIAGVAEVTIRQSYKLMYPHAS----KLF--PQDFV 298
DIA V + I +SY+ + + + KLF P D+V
Sbjct: 137 ADIARVDKKEIGRSYRFIARNLNLTPKKLFVKPTDYV 173
Score = 43.1 bits (100), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 46/86 (53%)
Query: 114 INSMADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEI 173
+N AD + L++ + RA + + + G+S + +A LYIA EG RT +E+
Sbjct: 173 VNKFADELGLSEKVRRRAIEILDEAYKRGLTSGKSPAGLVAAALYIASLLEGEKRTQREV 232
Query: 174 CAVSKISKKEIGRCFKLILKALETSV 199
V+++++ + +K +++ L+ V
Sbjct: 233 AEVARVTEVTVRNRYKELVEKLKIKV 258
>gi|55378612|ref|YP_136462.1| transcription initiation factor IIB [Haloarcula marismortui ATCC
43049]
gi|448637427|ref|ZP_21675665.1| transcription initiation factor IIB [Haloarcula sinaiiensis ATCC
33800]
gi|448652038|ref|ZP_21681051.1| transcription initiation factor IIB [Haloarcula californiae ATCC
33799]
gi|448681127|ref|ZP_21691273.1| transcription initiation factor IIB [Haloarcula argentinensis DSM
12282]
gi|448684938|ref|ZP_21693025.1| transcription initiation factor IIB [Haloarcula japonica DSM 6131]
gi|55231337|gb|AAV46756.1| transcription initiation factor IIB [Haloarcula marismortui ATCC
43049]
gi|445764274|gb|EMA15429.1| transcription initiation factor IIB [Haloarcula sinaiiensis ATCC
33800]
gi|445768185|gb|EMA19272.1| transcription initiation factor IIB [Haloarcula argentinensis DSM
12282]
gi|445769441|gb|EMA20515.1| transcription initiation factor IIB [Haloarcula californiae ATCC
33799]
gi|445782869|gb|EMA33710.1| transcription initiation factor IIB [Haloarcula japonica DSM 6131]
Length = 321
Score = 147 bits (372), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 94/278 (33%), Positives = 154/278 (55%), Gaps = 13/278 (4%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTF-SNEKSGVDPSRVGGPENPLLNGSDLS 74
L+ D G+ +C +CGLVV ID G EWR F S+EK + SRVG P +++ LS
Sbjct: 33 LVIDDEHGETVCEDCGLVVESDEIDRGPEWRAFDSSEKD--EKSRVGAPTTNMMHDKGLS 90
Query: 75 TMIGPGRGDASFDGFG---------MSKYQNR-RTMNSSDRALLNAIREINSMADRINLT 124
T I DA + + K+ R RT +S +R L A+ EI+ MA + L
Sbjct: 91 TNIDWRDKDAYGNSLSGKQRQKMQRLRKWNERFRTRDSKERNLKQALGEIDRMASALGLP 150
Query: 125 KTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEI 184
+ + + A+ ++++ D L GRS + +++A +Y A RQ GVPR+ EI VS++ K EI
Sbjct: 151 ENVRETASVIYRRALDEDLLPGRSIEGVSTASVYAAARQAGVPRSLDEITEVSRVEKSEI 210
Query: 185 GRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPI 244
R ++ +++ L V ++ RF S+L L + + A + + A E + G+SP+
Sbjct: 211 ARTYRYVVRELSLEVRPADPESYVPRFASSLELSDEAEHRARQLLQNAKEQGVHSGKSPV 270
Query: 245 SVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSY 282
+AAAA+Y A+ +++K +Q + ++A ++EVTIR Y
Sbjct: 271 GLAAAAVYAAALLTNEKTTQAAVSEVADISEVTIRNRY 308
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 56/96 (58%), Gaps = 1/96 (1%)
Query: 208 MSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEI 267
+ R S L LP V++ A+ I R+A++ D++PGRS V+ A++Y A++ + RS EI
Sbjct: 140 IDRMASALGLPENVRETASVIYRRALDEDLLPGRSIEGVSTASVYAAARQAGVPRSLDEI 199
Query: 268 GDIAGVAEVTIRQSYKLMYPHAS-KLFPQDFVFHTP 302
+++ V + I ++Y+ + S ++ P D + P
Sbjct: 200 TEVSRVEKSEIARTYRYVVRELSLEVRPADPESYVP 235
>gi|448391802|ref|ZP_21566897.1| transcription factor TFIIB cyclin-related protein [Haloterrigena
salina JCM 13891]
gi|445665214|gb|ELZ17892.1| transcription factor TFIIB cyclin-related protein [Haloterrigena
salina JCM 13891]
Length = 323
Score = 147 bits (372), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 95/292 (32%), Positives = 159/292 (54%), Gaps = 17/292 (5%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTF-SNEKSGVDPSRVGGPENPLLNGSDLS 74
++ D + +C +CGLVV + ID G EWR F + EK + SRVG P +++ LS
Sbjct: 35 VVSDAEHAETVCEDCGLVVEEDEIDRGPEWRAFDAAEKD--EKSRVGAPTTNMMHDQGLS 92
Query: 75 TMIGPGRGDASFDGFGMSKYQNR------------RTMNSSDRALLNAIREINSMADRIN 122
T IG DA G +S Q + RT +S +R L A+ EI+ MA +
Sbjct: 93 TNIGWQDKDAY--GRALSSRQRQKMQRLRTWNERFRTRDSKERNLKQALGEIDRMASALG 150
Query: 123 LTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKK 182
L + + + A+ ++++ + L GRS + +A+A LY A RQ G PR+ EI AVS++ K
Sbjct: 151 LPENVRETASVIYRRALEEDLLPGRSIEGVATASLYAAARQAGTPRSLDEISAVSRVEKM 210
Query: 183 EIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRS 242
E+ R ++ I++ L V ++ RF S+L L + ++ A + A + + G+S
Sbjct: 211 ELTRTYRYIIRELGLEVKPADPEHYVPRFVSDLDLSDETERMARELLESARQEGVHSGKS 270
Query: 243 PISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKLFP 294
P+ +AAAA+Y A+ +++K +Q ++ ++A ++EVTIR YK + + P
Sbjct: 271 PVGLAAAAVYAAALLTNEKVTQNDVSEVASISEVTIRNRYKELLEASDTAAP 322
>gi|435846578|ref|YP_007308828.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natronococcus occultus SP4]
gi|433672846|gb|AGB37038.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natronococcus occultus SP4]
Length = 328
Score = 147 bits (372), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 95/286 (33%), Positives = 153/286 (53%), Gaps = 12/286 (4%)
Query: 8 CYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPL 67
C E + +++ G++IC CGLV+ + +ID G EWR F N + + SRVG P
Sbjct: 36 CSECGSSDVVQHPSPGERICENCGLVIEEGMIDSGPEWRAF-NHQERQNKSRVGAPTTQT 94
Query: 68 LNGSDLSTMIGPGRGDASFDGFG---------MSKYQNR-RTMNSSDRALLNAIREINSM 117
++ L+T I DA + K+Q R RT ++ +R L A+ EI M
Sbjct: 95 IHDKGLTTQIDWKNKDAYGRSISSKKRSQMNRLRKWQTRIRTKDAGERNLQFALSEIERM 154
Query: 118 ADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVS 177
A + + K + + + ++++ ++GRS + +A+A LY CRQEG+PR+ +E+ VS
Sbjct: 155 ASALGVPKAVREVTSVIYRRALQEDLIRGRSIEGVATAALYAGCRQEGIPRSLEEVTEVS 214
Query: 178 KISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDI 237
+I + EI R ++ I L + I ++ RF S L L V+ A I + + +
Sbjct: 215 RIERIEISRTYRYISNELGLELLPIDPKQYVPRFTSKLDLSQEVETKAKEIIDETAD-PL 273
Query: 238 VPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
+ GR P AAAAIY A+ ++KR+QK++ D+A V EVTIR Y+
Sbjct: 274 LSGRGPSGFAAAAIYAATLLCNEKRTQKDVADVAQVTEVTIRNRYQ 319
>gi|448332083|ref|ZP_21521331.1| Transcription factor TFIIB cyclin-related protein [Natrinema
pellirubrum DSM 15624]
gi|445627928|gb|ELY81242.1| Transcription factor TFIIB cyclin-related protein [Natrinema
pellirubrum DSM 15624]
Length = 354
Score = 147 bits (371), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 100/317 (31%), Positives = 160/317 (50%), Gaps = 38/317 (11%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTF----SNEKSGV---------------- 55
L+ D + +C++CGLVV + ID G EWR F +EKS V
Sbjct: 37 LVSDDEHAETVCTDCGLVVEEDEIDRGPEWRAFDAAEKDEKSRVGAPTTNMMHDQGLSTN 96
Query: 56 --------DPSRVGGPENPLLNGSDLSTMIGPGRGDA---SFDGFGMSKYQNRRTMN--- 101
+ SRVG P +++ LST IG DA S K Q RT N
Sbjct: 97 IGWQXEKDEKSRVGAPTTNMMHDQGLSTNIGWQDKDAYGRSLSSRQRQKMQRLRTWNERF 156
Query: 102 ----SSDRALLNAIREINSMADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACL 157
S +R L A+ EI+ MA + L + + + A+ ++++ + L GRS + +A+A L
Sbjct: 157 RTRDSKERNLKQALGEIDRMASALGLPENVRETASVIYRRALEEDLLPGRSIEGVATASL 216
Query: 158 YIACRQEGVPRTFKEICAVSKISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSL 217
Y A RQ G PR+ EI AVS++ K E+ R ++ I++ L V ++ RF S+L L
Sbjct: 217 YAAARQAGTPRSLDEISAVSRVEKMELTRTYRYIIRELGLEVKPADPEHYVPRFVSDLDL 276
Query: 218 PNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVT 277
+ ++ A + A + + G+SP+ +AAA++Y A+ +++K +Q E+ D+A ++EVT
Sbjct: 277 SDETERMARELLESARQEGVHSGKSPVGLAAASVYAAALLTNEKVTQNEVSDVASISEVT 336
Query: 278 IRQSYKLMYPHASKLFP 294
IR YK + + P
Sbjct: 337 IRNRYKELLEASDTAAP 353
>gi|340345821|ref|ZP_08668953.1| Transcription initiation factor TFIIB [Candidatus Nitrosoarchaeum
koreensis MY1]
gi|339520962|gb|EGP94685.1| Transcription initiation factor TFIIB [Candidatus Nitrosoarchaeum
koreensis MY1]
Length = 303
Score = 147 bits (371), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 83/288 (28%), Positives = 150/288 (52%), Gaps = 11/288 (3%)
Query: 6 VCCYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPEN 65
V C + D G+ CS+CG V DR+ G EWR FS ++ G + +R G P +
Sbjct: 9 VRCQRCNKGVFLTDSNTGEMFCSKCGFVATDRIEQEGPEWRAFSKDE-GDNRTRTGTPTS 67
Query: 66 PLLNGSDLSTMIGPGRGDASFDGFGMS---------KYQNRRTMNS-SDRALLNAIREIN 115
++ L+T+I P DA+ S + NR ++ +DR A E++
Sbjct: 68 LAMHDMGLATIINPVNKDATGKPLSASMKSTIERLRTWDNRSQVHEPADRNFRQAFSELD 127
Query: 116 SMADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICA 175
+ ++ L+ ++++ ++++ D ++GRS + +A LY ACR PRT ++
Sbjct: 128 RLKTKLALSDAVIEKTAYIYRKALDKGLVRGRSIPGLIAASLYAACRNTETPRTLTDVSN 187
Query: 176 VSKISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVEL 235
I +K+I RC++L+L+ L+ + ++ +SR S L ++ A I +A ++
Sbjct: 188 GINIKRKDIARCYRLLLRELDLKMPVVNPIKCVSRISSIAGLSEKTKRKAVEILDQAAKI 247
Query: 236 DIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
++ G+ P+ +AAAA+Y++ + + ++QK+I AGV EVTIR YK
Sbjct: 248 ELSAGKDPMGLAAAALYLSCVINGENKTQKDIAVSAGVTEVTIRNRYK 295
>gi|407464443|ref|YP_006775325.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus sp. AR2]
gi|407047631|gb|AFS82383.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus sp. AR2]
Length = 298
Score = 147 bits (371), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 91/293 (31%), Positives = 158/293 (53%), Gaps = 13/293 (4%)
Query: 1 MNINKVCCYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRV 60
M++ ++ C L+ D + + CS CG+VV ++V D G R F++ S V S
Sbjct: 1 MSLQEIKCPRCGKNTLVTDVESSEVFCSNCGIVVEEKVDD-GRPERRFAD--SPVIKSHT 57
Query: 61 GGPENPLLNGSDLSTMIGPGRGDASFDGFGMS---------KYQNR-RTMNSSDRALLNA 110
G + + LSTMI P D++ + S K+ +R R S+DR L A
Sbjct: 58 GDKTSLTRHDRGLSTMINPFNKDSTGNPLSTSMKLSMTRLRKWDSRSRVKTSTDRNLQQA 117
Query: 111 IREINSMADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTF 170
+ E+ M ++++L I ++A+ ++++ + K ++GRS ++ +A LY ACR+ PRT
Sbjct: 118 LLELLKMKEKLSLPDAIAEKASYIYRKALEKKLVRGRSISSLVAASLYAACRESETPRTL 177
Query: 171 KEICAVSKISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIAR 230
+E+ A I +KEI ++LI K L+ + +I + +++ SN L ++ A I +
Sbjct: 178 REVAATIGIKRKEISATYRLIFKELDLKMPVIDSVSCIAKIASNAELSEKTKRHAIKILK 237
Query: 231 KAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
A + + + G+ P+ VAA+A+Y+A + R+QK+I D AG+ EVTIR K
Sbjct: 238 NAEKQNALAGKHPMGVAASALYLACINLEENRTQKDIADAAGITEVTIRNRCK 290
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%)
Query: 215 LSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVA 274
LSLP+ + + A++I RKA+E +V GRS S+ AA++Y A + S R+ +E+ G+
Sbjct: 128 LSLPDAIAEKASYIYRKALEKKLVRGRSISSLVAASLYAACRESETPRTLREVAATIGIK 187
Query: 275 EVTIRQSYKLMYPHASKLFP 294
I +Y+L++ P
Sbjct: 188 RKEISATYRLIFKELDLKMP 207
>gi|448318045|ref|ZP_21507583.1| Transcription factor TFIIB cyclin-related protein [Natronococcus
jeotgali DSM 18795]
gi|445600803|gb|ELY54805.1| Transcription factor TFIIB cyclin-related protein [Natronococcus
jeotgali DSM 18795]
Length = 319
Score = 147 bits (370), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 92/278 (33%), Positives = 150/278 (53%), Gaps = 11/278 (3%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLST 75
++ D G+++C ECGLV+ + ID G EWR F N + + SRVG P ++ L+T
Sbjct: 31 IVHDPDRGERVCEECGLVLTEDPIDYGPEWRAF-NAQEHDELSRVGAPLTQSMHDRGLTT 89
Query: 76 MIGPGRGDA-----SFDGFG----MSKYQNR-RTMNSSDRALLNAIREINSMADRINLTK 125
I DA S D G + +Q R RT N+ +R L A+ EI+ M + + K
Sbjct: 90 TIDWRNRDANGHSMSADKHGQLHRLRVWQERIRTKNAGERNLKYALSEIDRMVSALGVPK 149
Query: 126 TIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIG 185
+ + A+ +++Q D ++GRS + +A++ LY ACR+EG+PR+ +E+ VS++ ++EIG
Sbjct: 150 PVKETASVIYRQALDQDLIRGRSIEGVATSALYTACRKEGIPRSLEEVTGVSRVDQREIG 209
Query: 186 RCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPIS 245
R ++ I L+ +++ F+ RFCS L + V+ A I + + G+SP
Sbjct: 210 RTYRYIADELDINLEPTNPRQFVPRFCSELDVDKNVESKAIEIIDETTTQGLHSGKSPTG 269
Query: 246 VAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
AAAAIY A + Q+ + D A VT+R Y+
Sbjct: 270 FAAAAIYAAGLLCEETIPQRAVADTAQTTVVTVRNRYR 307
>gi|448300851|ref|ZP_21490848.1| Transcription factor TFIIB cyclin-related protein [Natronorubrum
tibetense GA33]
gi|445584841|gb|ELY39146.1| Transcription factor TFIIB cyclin-related protein [Natronorubrum
tibetense GA33]
Length = 316
Score = 147 bits (370), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 92/278 (33%), Positives = 150/278 (53%), Gaps = 11/278 (3%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLST 75
+I D G+++C ECGLV+ + ID G EWR F N + + SRVG P ++ L+T
Sbjct: 29 IIHDPDRGERVCEECGLVLTEDPIDYGPEWRAF-NAQEHDELSRVGAPLTQSMHDRGLTT 87
Query: 76 MIGPGRGDA-----SFDGFG----MSKYQNR-RTMNSSDRALLNAIREINSMADRINLTK 125
I DA S D G + +Q R RT N+ +R L A+ EI+ M + + +
Sbjct: 88 TIDWRNKDANGHSMSADKHGQLHRLRVWQERIRTKNAGERNLKYALSEIDRMVSALGVPR 147
Query: 126 TIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIG 185
+ + A+ +++Q D ++GRS + +A++ LY ACR+E +PR+ +E+ +VS++ ++EIG
Sbjct: 148 PVKETASVIYRQALDQDLIRGRSIEGVATSALYTACRKEDIPRSLEEVTSVSRVDQREIG 207
Query: 186 RCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPIS 245
R ++ I L+ +++ F+ RFCS L + V+ A I E + G+SP
Sbjct: 208 RTYRYIADELDINLEPTNPRQFVPRFCSELDVGKEVETKAVEIIDTTTEQGLHSGKSPTG 267
Query: 246 VAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
AAAAIY A + Q+ + D A VT+R Y+
Sbjct: 268 FAAAAIYAAGLLCDETIPQRAVADTAQTTVVTVRNRYR 305
>gi|407465796|ref|YP_006776678.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus sp. AR2]
gi|407048984|gb|AFS83736.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus sp. AR2]
Length = 301
Score = 147 bits (370), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 82/290 (28%), Positives = 160/290 (55%), Gaps = 11/290 (3%)
Query: 4 NKVCCYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGP 63
K C L+ D +G+ CS+CG V+ +++ + G EWR+F+ ++ G + +R G P
Sbjct: 5 TKELCPRCAQGKLVTDNESGEMFCSKCGFVITEKLQEAGPEWRSFTQDEGG-NKARAGAP 63
Query: 64 ENPLLNGSDLSTMIGPGRGDAS---FDGFGMSKYQNRRTMNSS-------DRALLNAIRE 113
+ ++ L+T+I P DAS S + RT +S DR A E
Sbjct: 64 TSLTMHDMGLATIINPINKDASGKPLSASMKSTIERLRTWDSRSQVHEPVDRNFRQAFSE 123
Query: 114 INSMADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEI 173
+N + D++ ++ +++++A ++++ + ++GRS A+ +A LY ACR PR K++
Sbjct: 124 LNRLKDKLAISDSVIEKAAYIYRKALEKGLVRGRSISALMAAALYAACRDTSTPRNLKDV 183
Query: 174 CAVSKISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAV 233
+ I +K+I RC++L++K L+ + + + ++R S + + ++ AT + + A
Sbjct: 184 EQAANIKRKDIARCYRLLVKELDLKMPVTDSIQCVARIASRIGIAEKTKRYATKVLKMAQ 243
Query: 234 ELDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
E ++ G+ P+ +AAAA+Y++ + + ++Q++I + A V EVTIR YK
Sbjct: 244 ENEVSAGKDPMGLAAAALYLSCVKNGEDKTQRDIAEAANVTEVTIRNRYK 293
>gi|16081990|ref|NP_394404.1| transcription initiation factor IIB [Thermoplasma acidophilum DSM
1728]
gi|14195242|sp|Q9HJM2.1|TF2B2_THEAC RecName: Full=Transcription initiation factor IIB 2; Short=TFIIB 2
gi|10640260|emb|CAC12074.1| transcription initiation factor IIB related protein [Thermoplasma
acidophilum]
Length = 307
Score = 146 bits (369), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 97/289 (33%), Positives = 158/289 (54%), Gaps = 19/289 (6%)
Query: 7 CCYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENP 66
C EH LI DY G+ IC++CG V+ D ID G EWR F +++ +R G P
Sbjct: 14 CNSEH----LIRDYEHGELICADCGAVIEDAYIDQGPEWRAFDSDQDE-RRARTGSPMTY 68
Query: 67 LLNGSDLSTMIG-----------PGRGDASFDGFGMSKYQNR-RTMNSSDRALLNAIREI 114
L + L+T I P + A + + K+ R R N+++R L A++ +
Sbjct: 69 LSHDKGLATEISWSNKDYYGKRIPHKNRAQI--YRVRKWHQRIRVSNAAERNLSLALQLL 126
Query: 115 NSMADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEIC 174
N + ++ + K I + A ++++ + ++GRS ++I A +Y ACR+ +PRT EI
Sbjct: 127 NDIGAKLGIPKDIKETAALIYRKAVEKNLIRGRSIESIVCASIYAACRKVNIPRTLDEIS 186
Query: 175 AVSKISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVE 234
S+++KK+IG+ ++ + K L+ ++ T ++S+FC+ L L + I R+A+
Sbjct: 187 KASEVNKKKIGKAYRHLAKELDLNLKPTTPFSYISQFCNKLDLDKQAIVISEDIVRQAMS 246
Query: 235 LDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
+ I G+ P +AAAAIY+AS R+QKEI I+GV EVTIR YK
Sbjct: 247 MGISSGKGPTGIAAAAIYIASVKVGKPRTQKEIARISGVTEVTIRNRYK 295
>gi|448309192|ref|ZP_21499054.1| transcription factor TFIIB cyclin-like protein [Natronorubrum
bangense JCM 10635]
gi|445591113|gb|ELY45322.1| transcription factor TFIIB cyclin-like protein [Natronorubrum
bangense JCM 10635]
Length = 316
Score = 146 bits (369), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 91/278 (32%), Positives = 152/278 (54%), Gaps = 11/278 (3%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLST 75
++ D G+++C ECGLV+ + ID G EWR F N + + SRVG P ++ L+T
Sbjct: 29 IVHDPDRGERVCKECGLVLTEDPIDYGPEWRAF-NAQEHNELSRVGAPLTQSMHDRGLTT 87
Query: 76 MIGPGRGDA-----SFDGFG----MSKYQNR-RTMNSSDRALLNAIREINSMADRINLTK 125
I DA S D G + +Q R RT N+ +R L A+ EI+ M + + K
Sbjct: 88 TIDWRNKDANGHSMSADKHGQLHRLRVWQERIRTKNAGERNLKYALSEIDRMVSALGVPK 147
Query: 126 TIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIG 185
+ + A+ +++Q + ++GRS + +A++ LY ACR+E +PR+ +E+ AVS++ ++EIG
Sbjct: 148 PVKETASVIYRQALEQDLIRGRSIEGVATSALYTACRKEDIPRSLEEVTAVSRVDQREIG 207
Query: 186 RCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPIS 245
R ++ I L+ +++ F+ RFCS L++ V+ A I + + + G+SP
Sbjct: 208 RTYRYIADELDINLEPTNPRQFVPRFCSELNVDKDVETKAVEIIDQTTQQGLHSGKSPTG 267
Query: 246 VAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
AAAAIY A + Q+ + D A VT+R Y+
Sbjct: 268 FAAAAIYAAGLLCDETIPQRAVADTAQTTVVTVRNRYR 305
>gi|327311923|ref|YP_004338820.1| transcription initiation factor IIB [Thermoproteus uzoniensis
768-20]
gi|326948402|gb|AEA13508.1| transcription initiation factor IIB [Thermoproteus uzoniensis
768-20]
Length = 317
Score = 146 bits (369), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 90/278 (32%), Positives = 152/278 (54%), Gaps = 12/278 (4%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLST 75
+ +Y G+ +C CG V+ + ++D+G EWR F+NE+ G +R G P L++ + L+T
Sbjct: 29 FVYNYERGEIVCVVCGTVISENLVDLGPEWRAFTNEEKG-QRARTGAPITRLVSEA-LTT 86
Query: 76 MIGPGRGDAS---------FDGFGMSKYQNR-RTMNSSDRALLNAIREINSMADRINLTK 125
+I D S + + K+Q R R S +R + A +E+ + + + +
Sbjct: 87 VIDWRDKDVSGKELDLKRKLEVIRLRKWQTRARVQTSYERNFVQAAQELERLKSAMGVPR 146
Query: 126 TIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIG 185
V++A +++Q + + ++GRS +A+A+A LY+ACR PR E+ +K S++E+
Sbjct: 147 PCVEQALEIYRQALEKELVRGRSVEAMAAAALYMACRMLKTPRPLDELIRFTKASRREVA 206
Query: 186 RCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPIS 245
RC++L+L+ L V + ++SR L L V K A I KA + + G+ P
Sbjct: 207 RCYRLLLRELNVRVPISDPVLYISRVAEQLKLTGDVVKTAIDIINKAKKAGLTAGKDPAG 266
Query: 246 VAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
+AAAA+Y+AS D R+QK+ AGV EVT+R YK
Sbjct: 267 LAAAAVYIASLLHGDNRTQKDFAIAAGVTEVTVRNRYK 304
>gi|375083610|ref|ZP_09730629.1| Transcription initiation factor IIB 2 [Thermococcus litoralis DSM
5473]
gi|374741803|gb|EHR78222.1| Transcription initiation factor IIB 2 [Thermococcus litoralis DSM
5473]
Length = 306
Score = 146 bits (369), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 98/281 (34%), Positives = 152/281 (54%), Gaps = 17/281 (6%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFS---NEKSGVDPSRVGGPENPLLNGSD 72
LI D + +CS CG V+ + ++D+G EWR F EK SRVG PE +L+
Sbjct: 18 LIYDPSRAEIVCSNCGYVLAEEIMDLGPEWRAFEPGQREKR----SRVGAPETVMLHDKG 73
Query: 73 LSTMIGPGRGD---ASFDG------FGMSKYQNR-RTMNSSDRALLNAIREINSMADRIN 122
LST I D + G + + +Q R R ++ DR L A+ E++ M ++
Sbjct: 74 LSTDIDWRNKDIHGSDISGSIRTKIYRLRMWQRRMRISDAIDRNLAFALSELDRMGSQLG 133
Query: 123 LTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKK 182
L + I + A L+++ K ++GRS + + SACLY ACR PRT EI VSK+ KK
Sbjct: 134 LPRNIREIAAVLYRKAVINKLVRGRSIEGMVSACLYAACRIANAPRTLDEIEDVSKVDKK 193
Query: 183 EIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRS 242
EIGR ++ + + L + + D++ RF L + ++ A I +A+E + G+
Sbjct: 194 EIGRSYRYLARELNLRLKPTSPIDYVIRFGDQLGISEKTKRRAVKILNQAIEKGLTSGKG 253
Query: 243 PISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
P +AAAAIY+AS +K +Q+E+ ++A V EVT+R YK
Sbjct: 254 PTGIAAAAIYIASLLEGEKMTQREVAEVARVTEVTVRNRYK 294
Score = 42.7 bits (99), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 44/78 (56%)
Query: 208 MSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEI 267
+ R S L LP +++ A + RKAV +V GRS + +A +Y A + ++ R+ EI
Sbjct: 125 LDRMGSQLGLPRNIREIAAVLYRKAVINKLVRGRSIEGMVSACLYAACRIANAPRTLDEI 184
Query: 268 GDIAGVAEVTIRQSYKLM 285
D++ V + I +SY+ +
Sbjct: 185 EDVSKVDKKEIGRSYRYL 202
>gi|167045037|gb|ABZ09701.1| putative transcription factor TFIIB repeat [uncultured marine
crenarchaeote HF4000_APKG8G15]
Length = 300
Score = 146 bits (369), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 83/288 (28%), Positives = 155/288 (53%), Gaps = 11/288 (3%)
Query: 5 KVCCYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPE 64
K C + LI D G+ C CG V +R+ G E R+F +++ + R G
Sbjct: 9 KQSCLRCGEKALITDAETGEVFCGACGFVSPERIESPGPERRSFPDDRG--NKERTGVGT 66
Query: 65 NPLLNGSDLSTMIGPGRGDASFDGFGMS--------KYQNRRTMNSS-DRALLNAIREIN 115
+ ++ LST+I P DA+ S + + R+ N DR A E+
Sbjct: 67 SLTIHDQGLSTVINPTNRDATGKPLSSSMKKTLKRLRVWDSRSHNKPIDRNFKQAFNELY 126
Query: 116 SMADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICA 175
+ D++ L+ ++V++A ++++ + K +KGR+ A+ ++ LY ACR+ G PRT K+I
Sbjct: 127 RLKDKLTLSDSVVEKAAYIYRKAINKKLVKGRTISALMASALYAACREVGTPRTLKDISD 186
Query: 176 VSKISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVEL 235
+ I K+++ ++L++ L+ + ++ + ++R S + + ++ AT I RKA E
Sbjct: 187 TTNIKKRDLAANYRLLVNELDLKIPVVNSVHNVARIASKIGISEKTKRIATEILRKAEES 246
Query: 236 DIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
+I G++P+S+AA A+Y++ + + + SQ+++ + A V EVTIR YK
Sbjct: 247 EISAGKNPMSLAATALYISCRKTGENYSQRDLAEAASVTEVTIRNRYK 294
Score = 42.4 bits (98), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 43/78 (55%)
Query: 208 MSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEI 267
+ R L+L + V + A +I RKA+ +V GR+ ++ A+A+Y A + R+ K+I
Sbjct: 125 LYRLKDKLTLSDSVVEKAAYIYRKAINKKLVKGRTISALMASALYAACREVGTPRTLKDI 184
Query: 268 GDIAGVAEVTIRQSYKLM 285
D + + + +Y+L+
Sbjct: 185 SDTTNIKKRDLAANYRLL 202
>gi|448444597|ref|ZP_21589887.1| transcription factor TFIIB cyclin-related protein [Halorubrum
saccharovorum DSM 1137]
gi|445686010|gb|ELZ38351.1| transcription factor TFIIB cyclin-related protein [Halorubrum
saccharovorum DSM 1137]
Length = 324
Score = 146 bits (369), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 90/265 (33%), Positives = 139/265 (52%), Gaps = 6/265 (2%)
Query: 22 AGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLSTMIGPG- 80
A +++C++CGLVV ID G EWR+F ++ + +P R G P + LST IG
Sbjct: 56 AAERVCADCGLVVEADRIDHGPEWRSFDDDDT--NPKRTGAPLTRSRHDRGLSTEIGRST 113
Query: 81 --RGDASFDGFGMSKYQNRRTMNSS-DRALLNAIREINSMADRINLTKTIVDRANNLFKQ 137
+G M NR +++ DR + A EI + + L ++ D A LF
Sbjct: 114 KVKGRKRRRLARMRTQHNRAQISTKRDRNKVYAYTEIRRLTGALELPDSVRDTACTLFDS 173
Query: 138 VHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGRCFKLILKALET 197
D L+GRS + A+ACLY+ACR V RT EICA +K ++ E F + + L
Sbjct: 174 AQDESLLRGRSLEGFAAACLYVACRTADVARTVGEICAEAKATEAEHRAAFDAMNRELGL 233
Query: 198 SVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQA 257
+ +++ RF S+L V++ A +A +AVE I GR+P+ VAAA +Y A++
Sbjct: 234 PIAPTGPAEYLPRFASDLDCDAAVERRAGELAERAVEEGIANGRNPVGVAAACLYTAARE 293
Query: 258 SSDKRSQKEIGDIAGVAEVTIRQSY 282
+ +Q+E D A V VT+R++Y
Sbjct: 294 LDAECTQREAADAADVTPVTVRRTY 318
>gi|257389069|ref|YP_003178842.1| transcription factor TFIIB cyclin-related protein [Halomicrobium
mukohataei DSM 12286]
gi|257171376|gb|ACV49135.1| Transcription factor TFIIB cyclin-related [Halomicrobium mukohataei
DSM 12286]
Length = 327
Score = 146 bits (369), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 94/278 (33%), Positives = 154/278 (55%), Gaps = 13/278 (4%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTF-SNEKSGVDPSRVGGPENPLLNGSDLS 74
L+ D G+ +C +CGLVV ID G EWR F S+EK + SRVG P +++ LS
Sbjct: 39 LVVDDEHGETVCEDCGLVVETDEIDRGPEWRAFDSSEKD--EKSRVGAPTTNMMHDKGLS 96
Query: 75 TMIGPGRGDASFDGFG---------MSKYQNR-RTMNSSDRALLNAIREINSMADRINLT 124
T I DA + + K+ R RT +S +R L A+ EI+ MA + L
Sbjct: 97 TNIDWRDKDAYGNSLSGKQRQKMQRLRKWNERFRTRDSKERNLKQALGEIDRMASAVGLP 156
Query: 125 KTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEI 184
+ + + A+ ++++ D L GRS + +++A +Y A RQ GVPR+ EI VS++ K EI
Sbjct: 157 ENVRETASVIYRRALDENLLPGRSIEGVSTASVYAAARQAGVPRSLDEIDEVSRVEKSEI 216
Query: 185 GRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPI 244
R ++ +++ L V ++ RF S+L L + + A + + A E + G+SP+
Sbjct: 217 ARTYRYVVRELGLEVAPADPESYVPRFASSLELSDEAEHRARQLLQNAKEQGVHSGKSPV 276
Query: 245 SVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSY 282
+AAAA+Y A+ +++K +Q + ++A ++EVTIR Y
Sbjct: 277 GLAAAAVYAAALLTNEKTTQAAVSEVADISEVTIRNRY 314
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 49/78 (62%)
Query: 208 MSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEI 267
+ R S + LP V++ A+ I R+A++ +++PGRS V+ A++Y A++ + RS EI
Sbjct: 146 IDRMASAVGLPENVRETASVIYRRALDENLLPGRSIEGVSTASVYAAARQAGVPRSLDEI 205
Query: 268 GDIAGVAEVTIRQSYKLM 285
+++ V + I ++Y+ +
Sbjct: 206 DEVSRVEKSEIARTYRYV 223
>gi|222479036|ref|YP_002565273.1| transcription factor TFIIB cyclin-related [Halorubrum lacusprofundi
ATCC 49239]
gi|222451938|gb|ACM56203.1| Transcription factor TFIIB cyclin-related [Halorubrum lacusprofundi
ATCC 49239]
Length = 324
Score = 146 bits (369), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 95/281 (33%), Positives = 152/281 (54%), Gaps = 13/281 (4%)
Query: 13 DAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTF-SNEKSGVDPSRVGGPENPLLNGS 71
D +I D G+ +C++CGLVV +D G EWR F S EK + SRVG P ++
Sbjct: 34 DGNVINDEEHGESVCADCGLVVEADSVDRGPEWRAFDSREKD--EKSRVGAPTTNTMHDK 91
Query: 72 DLSTMIGPGRGDASFDGFG---------MSKYQNR-RTMNSSDRALLNAIREINSMADRI 121
LST I DA G + K+ R RT +S +R L A+ EI+ MA
Sbjct: 92 GLSTNIDWRDKDAYGRSLGARQRQKMQRLRKWNERFRTRDSKERNLKQALGEIDRMASAQ 151
Query: 122 NLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISK 181
L + + A+ ++++ D L GRS + ++++C+Y A R GVPR+ EI VS++ K
Sbjct: 152 GLPDNVRETASVIYRRALDEDLLPGRSIEGVSTSCVYAAARMAGVPRSLDEIADVSRVEK 211
Query: 182 KEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGR 241
EI R ++ +++ L+ V ++ RF S+L L + A + R A E + G+
Sbjct: 212 AEIARTYRYVVRELKLEVKPADPEQYVPRFASDLELSEESEMRAKSLLRNAKEKGVHSGK 271
Query: 242 SPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSY 282
SP+ +AAAA+Y A+ +++K +Q + ++A ++EVTIR Y
Sbjct: 272 SPVGLAAAAVYAAALLTNEKTTQAAVSEVADISEVTIRNRY 312
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 48/78 (61%)
Query: 208 MSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEI 267
+ R S LP+ V++ A+ I R+A++ D++PGRS V+ + +Y A++ + RS EI
Sbjct: 144 IDRMASAQGLPDNVRETASVIYRRALDEDLLPGRSIEGVSTSCVYAAARMAGVPRSLDEI 203
Query: 268 GDIAGVAEVTIRQSYKLM 285
D++ V + I ++Y+ +
Sbjct: 204 ADVSRVEKAEIARTYRYV 221
>gi|448336885|ref|ZP_21525972.1| Transcription factor TFIIB cyclin-related protein [Natrinema
pallidum DSM 3751]
gi|445627223|gb|ELY80548.1| Transcription factor TFIIB cyclin-related protein [Natrinema
pallidum DSM 3751]
Length = 319
Score = 146 bits (368), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 91/278 (32%), Positives = 152/278 (54%), Gaps = 11/278 (3%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLST 75
+I D G+Q+C+ECGLV+ + ID G EWR F N + + SRVG P ++ L+T
Sbjct: 31 IIHDPDRGEQVCAECGLVLTEDPIDYGPEWRAF-NAQEHDELSRVGAPLTQSMHDRGLTT 89
Query: 76 MIGPGRGDA-----SFDGFG----MSKYQNR-RTMNSSDRALLNAIREINSMADRINLTK 125
I DA S D G + +Q R RT N+ +R L A+ EI+ M + + K
Sbjct: 90 TIDWRNKDANGHSMSADKHGQLHRLRVWQERIRTKNAGERNLKYALSEIDRMVSALGVPK 149
Query: 126 TIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIG 185
+ + A+ +++Q + ++GRS + +A++ LY ACR+E +PR+ +E+ +V+++ ++EIG
Sbjct: 150 PVKETASVIYRQALEQDLIRGRSIEGVATSALYTACRKEDIPRSLEEVTSVARVEQREIG 209
Query: 186 RCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPIS 245
R ++ I L+ +++ F+ RFCS L + V+ A I + E + G+SP
Sbjct: 210 RTYRYIADELDINLEPTNPRQFVPRFCSELDVDTDVETKAIEIIDRTTEQGLHSGKSPTG 269
Query: 246 VAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
AAAAIY A + Q+ + + A VT+R Y+
Sbjct: 270 FAAAAIYAAGLLCDETIPQRAVAETAQTTVVTVRNRYR 307
>gi|448627270|ref|ZP_21671883.1| transcription initiation factor IIB [Haloarcula vallismortis ATCC
29715]
gi|445759099|gb|EMA10386.1| transcription initiation factor IIB [Haloarcula vallismortis ATCC
29715]
Length = 322
Score = 146 bits (368), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 93/278 (33%), Positives = 149/278 (53%), Gaps = 11/278 (3%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLST 75
++ D G+ +C +CGLVV + ID G EWR F N SRVG P +++ LST
Sbjct: 36 VVTDTEHGETVCEDCGLVVEEDEIDRGPEWRAF-NSAEKDRKSRVGAPTTNMMHDKGLST 94
Query: 76 MIGPGRGDA---SFDGFGMSKYQNRRTMN-------SSDRALLNAIREINSMADRINLTK 125
IG DA S K Q RT N S +R L A+ EI+ MA + L +
Sbjct: 95 NIGWQNKDAYGRSLSSEQRQKMQRLRTWNERFRTRDSKERNLKQALGEIDRMASALGLPQ 154
Query: 126 TIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIG 185
+ + A+ ++++ L GRS + +A++ LY A R G PR+ E+ VS++ K E+
Sbjct: 155 NVRETASVIYRRALGDDLLPGRSIEGVATSALYAAARMAGNPRSLDEMARVSRVEKMELT 214
Query: 186 RCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPIS 245
R ++ I++ L V ++ RF S+L L Q+ A + A + ++ G+SP+
Sbjct: 215 RTYRYIVRELSLEVQPADPEHYLPRFISDLELSEETQRQARDLVEGARQSGMLSGKSPVG 274
Query: 246 VAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
+AAAA+Y A+ +++K +Q ++ D+A ++EVTIR YK
Sbjct: 275 IAAAAVYAAALLTNEKVTQSQVSDVADISEVTIRNRYK 312
>gi|257076877|ref|ZP_05571238.1| transcription initiation factor IIB [Ferroplasma acidarmanus fer1]
Length = 305
Score = 146 bits (368), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 95/288 (32%), Positives = 160/288 (55%), Gaps = 15/288 (5%)
Query: 8 CYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPL 67
C E L++DY G+ C +CG+V+ D +ID G EWR F +E+ G SR G P + L
Sbjct: 9 CPECGSIHLVKDYDRGELTCYDCGIVIEDSLIDQGPEWRAFDSEQDG-KRSRTGSPMSFL 67
Query: 68 LNGSDLSTMIGPGRGDASFDG-----------FGMSKYQNR-RTMNSSDRALLNAIREIN 115
+ L+T I D + G + + K+ R R N+++R L A++ +N
Sbjct: 68 SHDKGLATEISWSNKD--YYGKRIPHKNRSQIYRVRKWHQRIRVSNAAERNLALALQVLN 125
Query: 116 SMADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICA 175
++ + K I + A ++++ + ++GRS ++I A +Y +CR +PRT EI
Sbjct: 126 EDGAKLGIPKDIKESAALIYRKAVEKNLIRGRSIESIVCASIYASCRMINIPRTLDEISK 185
Query: 176 VSKISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVEL 235
VS+++KK+IG+ ++ + K L ++ T ++S+FC+ L L V + HI R A E
Sbjct: 186 VSEVNKKKIGKAYRHLAKELALNLQPTTPYSYVSQFCNKLDLDKQVIMDSEHIIRLAGES 245
Query: 236 DIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
+ G+ P +AAAAIY+A+ + +R+QK++ ++GV EVTIR YK
Sbjct: 246 GLSTGKGPTGIAAAAIYIAAMKNGKQRTQKDVARVSGVTEVTIRNRYK 293
>gi|448488467|ref|ZP_21607303.1| transcription factor TFIIB cyclin-related protein [Halorubrum
californiensis DSM 19288]
gi|445696157|gb|ELZ48250.1| transcription factor TFIIB cyclin-related protein [Halorubrum
californiensis DSM 19288]
Length = 324
Score = 146 bits (368), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 95/278 (34%), Positives = 151/278 (54%), Gaps = 13/278 (4%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTF-SNEKSGVDPSRVGGPENPLLNGSDLS 74
+I D G+ +CS+CGLVV +D G EWR F S EK + SRVG P ++ LS
Sbjct: 37 VINDEEHGETVCSDCGLVVEADSVDRGPEWRAFDSREKD--EKSRVGAPTTNTMHDKGLS 94
Query: 75 TMIGPGRGDASFDGFG---------MSKYQNR-RTMNSSDRALLNAIREINSMADRINLT 124
T I DA G + K+ R RT +S +R L A+ EI+ MA L
Sbjct: 95 TNIDWRDKDAYGRSLGARQRQKMQRLRKWNERFRTRDSKERNLKQALGEIDRMASAQGLP 154
Query: 125 KTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEI 184
+ + A+ ++++ D L GRS + ++++C+Y A R GVPR+ EI VS++ K EI
Sbjct: 155 DNVRETASVIYRRALDEDLLPGRSIEGVSTSCVYAAARMAGVPRSLDEIADVSRVEKAEI 214
Query: 185 GRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPI 244
R ++ +++ L+ V ++ RF S+L L + A + R A E + G+SP+
Sbjct: 215 ARTYRYVVRELKLEVKPADPEQYVPRFASDLELSEESEMRAKSLLRNAKEKGVHSGKSPV 274
Query: 245 SVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSY 282
+AAAA+Y A+ +++K +Q + ++A ++EVTIR Y
Sbjct: 275 GLAAAAVYAAALLTNEKTTQAAVSEVADISEVTIRNRY 312
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 48/78 (61%)
Query: 208 MSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEI 267
+ R S LP+ V++ A+ I R+A++ D++PGRS V+ + +Y A++ + RS EI
Sbjct: 144 IDRMASAQGLPDNVRETASVIYRRALDEDLLPGRSIEGVSTSCVYAAARMAGVPRSLDEI 203
Query: 268 GDIAGVAEVTIRQSYKLM 285
D++ V + I ++Y+ +
Sbjct: 204 ADVSRVEKAEIARTYRYV 221
>gi|448418737|ref|ZP_21579914.1| transcription factor TFIIB cyclin-related protein [Halosarcina
pallida JCM 14848]
gi|445676131|gb|ELZ28655.1| transcription factor TFIIB cyclin-related protein [Halosarcina
pallida JCM 14848]
Length = 335
Score = 146 bits (368), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 93/280 (33%), Positives = 149/280 (53%), Gaps = 11/280 (3%)
Query: 14 APLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDL 73
APL +D G+ C ECGLVV + ID G EWR F N D SRVGGP L+ L
Sbjct: 47 APLQQDETHGETTCIECGLVVTEDEIDRGPEWRCF-NAAEKEDRSRVGGPTTKRLHDDGL 105
Query: 74 STMIGPGRGDASFDGFGMSKYQNR----------RTMNSSDRALLNAIREINSMADRINL 123
ST+I DA + K Q R+ ++ +R L +A+ E++ MA + L
Sbjct: 106 STVIDWQNSDAHGNALSSKKRQQMQRLRTWDERFRSKDAQERNLKHALGEVDRMASALGL 165
Query: 124 TKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKE 183
+ + + A+ +++Q D L+GRS + +ASA LY RQ G PR+ E+ VS++ K
Sbjct: 166 PEAVRETASVVYRQALDADLLRGRSIEGVASASLYAGARQMGTPRSLSEVTTVSRVEKLR 225
Query: 184 IGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSP 243
I R + I + L V+L +++RF S+L + + V++ + ++ G+SP
Sbjct: 226 IQRAYSYIAQELGLGVELADPHTYVTRFVSDLDVTHEVEQIGHELLDAGNAQNVHSGKSP 285
Query: 244 ISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
+ +AAAA+Y AS+ ++ + +Q+ + V+ VTIR Y+
Sbjct: 286 VGLAAAAVYAASRLANQRVTQETVAATTDVSMVTIRNRYQ 325
>gi|448503531|ref|ZP_21613160.1| transcription factor TFIIB cyclin-related protein [Halorubrum
coriense DSM 10284]
gi|445691732|gb|ELZ43915.1| transcription factor TFIIB cyclin-related protein [Halorubrum
coriense DSM 10284]
Length = 324
Score = 146 bits (368), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 95/278 (34%), Positives = 151/278 (54%), Gaps = 13/278 (4%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTF-SNEKSGVDPSRVGGPENPLLNGSDLS 74
+I D G+ +CS+CGLVV +D G EWR F S EK + SRVG P ++ LS
Sbjct: 37 VINDEEHGETVCSDCGLVVEADSVDRGPEWRAFDSREKD--EKSRVGAPTTNTMHDKGLS 94
Query: 75 TMIGPGRGDASFDGFG---------MSKYQNR-RTMNSSDRALLNAIREINSMADRINLT 124
T I DA G + K+ R RT +S +R L A+ EI+ MA L
Sbjct: 95 TNIDWRDKDAYGRSLGARQRQKMQRLRKWNERFRTRDSKERNLKQALGEIDRMASAQGLP 154
Query: 125 KTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEI 184
+ + A+ ++++ D L GRS + ++++C+Y A R GVPR+ EI VS++ K EI
Sbjct: 155 DNVRETASVIYRRALDEDLLPGRSIEGVSTSCVYAAARMAGVPRSLDEIADVSRVEKAEI 214
Query: 185 GRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPI 244
R ++ +++ L+ V ++ RF S+L L + A + R A E + G+SP+
Sbjct: 215 ARTYRYVVRELKLEVKPADPEQYVPRFASDLELSEESEMRAKSLLRNAKEKGVHSGKSPV 274
Query: 245 SVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSY 282
+AAAA+Y A+ +++K +Q + ++A ++EVTIR Y
Sbjct: 275 GLAAAAVYAAALLTNEKTTQAAVSEVADISEVTIRNRY 312
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 48/78 (61%)
Query: 208 MSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEI 267
+ R S LP+ V++ A+ I R+A++ D++PGRS V+ + +Y A++ + RS EI
Sbjct: 144 IDRMASAQGLPDNVRETASVIYRRALDEDLLPGRSIEGVSTSCVYAAARMAGVPRSLDEI 203
Query: 268 GDIAGVAEVTIRQSYKLM 285
D++ V + I ++Y+ +
Sbjct: 204 ADVSRVEKAEIARTYRYV 221
>gi|448346035|ref|ZP_21534924.1| Transcription factor TFIIB cyclin-related protein [Natrinema
altunense JCM 12890]
gi|445633968|gb|ELY87155.1| Transcription factor TFIIB cyclin-related protein [Natrinema
altunense JCM 12890]
Length = 319
Score = 146 bits (368), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 91/278 (32%), Positives = 151/278 (54%), Gaps = 11/278 (3%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLST 75
+I D G+Q+C ECGLV+ + ID G EWR F N + + SRVG P ++ L+T
Sbjct: 31 IIHDPDRGEQVCEECGLVLTEDPIDYGPEWRAF-NAQEHDELSRVGAPLTQSMHDRGLTT 89
Query: 76 MIGPGRGDA-----SFDGFG----MSKYQNR-RTMNSSDRALLNAIREINSMADRINLTK 125
I DA S D G + +Q R RT N+ +R L A+ EI+ M + + K
Sbjct: 90 TIDWRNKDANGHSMSADKHGQLHRLRVWQERIRTKNAGERNLKYALSEIDRMVSALGVPK 149
Query: 126 TIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIG 185
+ + A+ +++Q + ++GRS + +A++ LY ACR+E +PR+ +E+ +V+++ ++EIG
Sbjct: 150 PVKETASVIYRQALEQDLIRGRSIEGVATSALYTACRKEDIPRSLEEVTSVARVEQREIG 209
Query: 186 RCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPIS 245
R ++ I L+ +++ F+ RFCS L + V+ A I + E + G+SP
Sbjct: 210 RTYRYIADELDINLEPTNPRQFVPRFCSELDVDTDVETKAIEIIDRTTEQGLHSGKSPTG 269
Query: 246 VAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
AAAAIY A + Q+ + + A VT+R Y+
Sbjct: 270 FAAAAIYAAGLLCDETIPQRAVAETAQTTVVTVRNRYR 307
>gi|397773185|ref|YP_006540731.1| Transcription factor TFIIB cyclin-related protein [Natrinema sp.
J7-2]
gi|448340837|ref|ZP_21529806.1| Transcription factor TFIIB cyclin-related protein [Natrinema gari
JCM 14663]
gi|397682278|gb|AFO56655.1| Transcription factor TFIIB cyclin-related protein [Natrinema sp.
J7-2]
gi|445629443|gb|ELY82726.1| Transcription factor TFIIB cyclin-related protein [Natrinema gari
JCM 14663]
Length = 319
Score = 146 bits (368), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 91/278 (32%), Positives = 152/278 (54%), Gaps = 11/278 (3%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLST 75
+I D G+Q+C+ECGLV+ + ID G EWR F N + + SRVG P ++ L+T
Sbjct: 31 IIHDPDRGEQVCAECGLVLTEDPIDYGPEWRAF-NAQEHDELSRVGAPLTQSMHDRGLTT 89
Query: 76 MIGPGRGDA-----SFDGFG----MSKYQNR-RTMNSSDRALLNAIREINSMADRINLTK 125
I DA S D G + +Q R RT N+ +R L A+ EI+ M + + K
Sbjct: 90 TIDWRNKDANGHSMSADKHGQLHRLRVWQERIRTKNAGERNLKYALSEIDRMVSALGVPK 149
Query: 126 TIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIG 185
+ + A+ +++Q + ++GRS + +A++ LY ACR+E +PR+ +E+ +V+++ ++EIG
Sbjct: 150 PVKETASVIYRQALEQDLIRGRSIEGVATSALYTACRKEDIPRSLEEVTSVARVEQREIG 209
Query: 186 RCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPIS 245
R ++ I L+ +++ F+ RFCS L + V+ A I + E + G+SP
Sbjct: 210 RTYRYIADELDINLEPTNPRQFVPRFCSELDVGTDVETKAIEIIDRTTEQGLHSGKSPTG 269
Query: 246 VAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
AAAAIY A + Q+ + + A VT+R Y+
Sbjct: 270 FAAAAIYAAGLLCDETIPQRAVAETAQTTVVTVRNRYR 307
>gi|448435246|ref|ZP_21586723.1| transcription factor TFIIB cyclin-related protein [Halorubrum
tebenquichense DSM 14210]
gi|445684070|gb|ELZ36456.1| transcription factor TFIIB cyclin-related protein [Halorubrum
tebenquichense DSM 14210]
Length = 324
Score = 146 bits (368), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 95/278 (34%), Positives = 151/278 (54%), Gaps = 13/278 (4%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTF-SNEKSGVDPSRVGGPENPLLNGSDLS 74
+I D G+ +CS+CGLVV +D G EWR F S EK + SRVG P ++ LS
Sbjct: 37 VINDEEHGETVCSDCGLVVEADSVDRGPEWRAFDSREKD--EKSRVGAPTTNTMHDKGLS 94
Query: 75 TMIGPGRGDASFDGFG---------MSKYQNR-RTMNSSDRALLNAIREINSMADRINLT 124
T I DA G + K+ R RT +S +R L A+ EI+ MA L
Sbjct: 95 TNIDWRDKDAYGRSLGARQRQKMQRLRKWNERFRTRDSKERNLKQALGEIDRMASAQGLP 154
Query: 125 KTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEI 184
+ + A+ ++++ D L GRS + ++++C+Y A R GVPR+ EI VS++ K EI
Sbjct: 155 DNVRETASVIYRRALDEDLLPGRSIEGVSTSCVYAAARMAGVPRSLDEIADVSRVEKAEI 214
Query: 185 GRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPI 244
R ++ +++ L+ V ++ RF S+L L + A + R A E + G+SP+
Sbjct: 215 ARTYRYVVRELKLEVKPADPEQYVPRFASDLELSEESEMRAKSLLRNAKEKGVHSGKSPV 274
Query: 245 SVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSY 282
+AAAA+Y A+ +++K +Q + ++A ++EVTIR Y
Sbjct: 275 GLAAAAVYAAALLTNEKTTQAAVSEVADISEVTIRNRY 312
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 48/78 (61%)
Query: 208 MSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEI 267
+ R S LP+ V++ A+ I R+A++ D++PGRS V+ + +Y A++ + RS EI
Sbjct: 144 IDRMASAQGLPDNVRETASVIYRRALDEDLLPGRSIEGVSTSCVYAAARMAGVPRSLDEI 203
Query: 268 GDIAGVAEVTIRQSYKLM 285
D++ V + I ++Y+ +
Sbjct: 204 ADVSRVEKAEIARTYRYV 221
>gi|435846952|ref|YP_007309202.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natronococcus occultus SP4]
gi|433673220|gb|AGB37412.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natronococcus occultus SP4]
Length = 325
Score = 146 bits (368), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 95/278 (34%), Positives = 152/278 (54%), Gaps = 13/278 (4%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTF-SNEKSGVDPSRVGGPENPLLNGSDLS 74
L D + +C +CGLVV + ID G EWR F + EK + SRVG P +++ LS
Sbjct: 38 LRSDSEHAETVCQDCGLVVEEGEIDRGPEWRAFDAAEKD--EKSRVGAPTTNMMHDQGLS 95
Query: 75 TMIGPGRGDA---SFDGFGMSKYQNRRTMN-------SSDRALLNAIREINSMADRINLT 124
T IG DA S K Q RT N S +R L A+ EI+ MA + L
Sbjct: 96 TNIGWQDKDAYGRSLSSRQRQKMQRLRTWNERFRTRDSKERNLKQALGEIDRMASALGLP 155
Query: 125 KTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEI 184
+ + + A+ ++++ + L GRS + +A++ LY A RQ G PR+ EI AVS++ K EI
Sbjct: 156 ENVRETASVIYRRALEEDLLPGRSIEGVATSALYAAARQAGTPRSLDEISAVSRVGKDEI 215
Query: 185 GRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPI 244
R ++ +++ L V ++ RF S L L + ++ A + + A E + G+SP+
Sbjct: 216 ARTYRYVIRELGLEVQPADPESYVPRFASELELSDETERRARSLLQTAKEEGVHSGKSPV 275
Query: 245 SVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSY 282
+AAAA+Y A+ +++K +Q ++ ++A ++EVTIR Y
Sbjct: 276 GLAAAAVYAAALLTNEKVTQNDVSEVASISEVTIRNRY 313
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 48/78 (61%)
Query: 208 MSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEI 267
+ R S L LP V++ A+ I R+A+E D++PGRS VA +A+Y A++ + RS EI
Sbjct: 145 IDRMASALGLPENVRETASVIYRRALEEDLLPGRSIEGVATSALYAAARQAGTPRSLDEI 204
Query: 268 GDIAGVAEVTIRQSYKLM 285
++ V + I ++Y+ +
Sbjct: 205 SAVSRVGKDEIARTYRYV 222
>gi|448359569|ref|ZP_21548219.1| transcription factor TFIIB cyclin-like protein [Natrialba
chahannaoensis JCM 10990]
gi|445642204|gb|ELY95273.1| transcription factor TFIIB cyclin-like protein [Natrialba
chahannaoensis JCM 10990]
Length = 317
Score = 146 bits (368), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 90/278 (32%), Positives = 152/278 (54%), Gaps = 11/278 (3%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLST 75
++ D G+++C ECGLV+ + ID G EWR F N + + SRVG P ++ L+T
Sbjct: 29 IVHDPDRGERVCDECGLVLTEDPIDYGPEWRAF-NAQEHDELSRVGAPLTQSMHDRGLTT 87
Query: 76 MIGPGRGDA-----SFDGFG----MSKYQNR-RTMNSSDRALLNAIREINSMADRINLTK 125
I DA S D G + +Q R RT N+ +R L A+ EI+ M + + K
Sbjct: 88 TIDWRNKDANGHSMSADKHGQLHRLRVWQERIRTKNAGERNLKYALSEIDRMVSALGVPK 147
Query: 126 TIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIG 185
+ + A+ ++++ + ++GRS + +A++ LY ACR+EG+PR+ +E+ +VS++ ++EIG
Sbjct: 148 PVKETASVIYRRALEQDLIRGRSIEGVATSALYTACRKEGIPRSLEEVTSVSRVDQREIG 207
Query: 186 RCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPIS 245
R ++ I L+ +++ F+ RFCS L + V+ A I + + + G+SP
Sbjct: 208 RTYRYIADELDINLEPTNPRQFVPRFCSELDVSKEVETRAVEIINQTTDKGLHSGKSPTG 267
Query: 246 VAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
AAAAIY A + Q+ + D A VT+R Y+
Sbjct: 268 FAAAAIYAAGLLCDETIPQRAVADTAQTTVVTVRNRYR 305
>gi|448497537|ref|ZP_21610490.1| transcription factor TFIIB cyclin-related protein [Halorubrum
coriense DSM 10284]
gi|445699768|gb|ELZ51788.1| transcription factor TFIIB cyclin-related protein [Halorubrum
coriense DSM 10284]
Length = 340
Score = 146 bits (368), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 88/263 (33%), Positives = 140/263 (53%), Gaps = 6/263 (2%)
Query: 24 DQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLSTMIGPG--- 80
+++C++CGLVV ID G EWR+F ++ + +P R G P + LST IG
Sbjct: 74 ERVCADCGLVVEADRIDHGPEWRSFDDDDT--NPKRTGAPLTRSRHDRGLSTEIGRSTKV 131
Query: 81 RGDASFDGFGMSKYQNRRTMNSS-DRALLNAIREINSMADRINLTKTIVDRANNLFKQVH 139
+G M NR +++ DR + A EI + + L ++ D A LF
Sbjct: 132 KGRKRRRLARMRTQHNRAQISTKRDRNKVYAYTEIRRLTGALELPDSVRDAACALFDSAQ 191
Query: 140 DGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGRCFKLILKALETSV 199
D L+GRS + A+AC+Y+ACR V RT E+CA +K ++ E F + + L +
Sbjct: 192 DESLLRGRSLEGFAAACVYVACRTADVARTVGEVCAEAKATEDEHRAAFDAMNRELGLPI 251
Query: 200 DLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASS 259
+++ RF S+L V++ A +A +AVE I GR+P+ VAAA +Y A++
Sbjct: 252 APSGPAEYLPRFASDLGCDPAVERRAGELAERAVEEGIANGRNPVGVAAACLYTAARELD 311
Query: 260 DKRSQKEIGDIAGVAEVTIRQSY 282
+ +Q+E D+AGV VT+R++Y
Sbjct: 312 AECTQREAADVAGVTPVTVRRTY 334
>gi|167042470|gb|ABZ07195.1| putative transcription factor TFIIB repeat [uncultured marine
crenarchaeote HF4000_ANIW133C7]
Length = 304
Score = 146 bits (368), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 82/278 (29%), Positives = 156/278 (56%), Gaps = 11/278 (3%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLST 75
L+ D+ +G+ CS+CG V+ D+ + G EWR+F+ ++ G D +R G P + ++ L+T
Sbjct: 22 LVTDHESGETFCSKCGFVLSDKAQETGPEWRSFTQDEHG-DRARAGAPTSLTMHDMGLAT 80
Query: 76 MIGPGRGDAS---FDGFGMSKYQNRRTMNSS-------DRALLNAIREINSMADRINLTK 125
+I P DAS S + RT +S DR A E+N + D++ ++
Sbjct: 81 IINPTNKDASGKPLSSSMKSTIERLRTWDSRSQVHEPVDRNFRQAFSELNRLKDKLAISD 140
Query: 126 TIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIG 185
++++A ++++ D ++GRS A+ ++ LY ACR PR K++ + I +K+I
Sbjct: 141 AVIEKAAYIYRKALDKGLVRGRSISALMASALYAACRDTETPRNLKDVEQAANIKRKDIA 200
Query: 186 RCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPIS 245
RC++L++K L+ + + + ++R S + + ++ A + + A + +I G+ P+
Sbjct: 201 RCYRLLIKELDLHLPVTDSVQCVARIASQIGIQEKTKRHAIKVLKLAQKNEISAGKDPMG 260
Query: 246 VAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
+AAAA+Y+A + + ++Q++I + A V EVTIR YK
Sbjct: 261 LAAAALYLACVKNGEDKTQRDIAEAANVTEVTIRNRYK 298
Score = 41.2 bits (95), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 52/101 (51%), Gaps = 8/101 (7%)
Query: 208 MSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEI 267
++R L++ + V + A +I RKA++ +V GRS ++ A+A+Y A + + R+ K++
Sbjct: 129 LNRLKDKLAISDAVIEKAAYIYRKALDKGLVRGRSISALMASALYAACRDTETPRNLKDV 188
Query: 268 GDIAGVAEVTIRQSYKLMYPHASKLFPQDFVFHTPIHELPQ 308
A + I + Y+L+ ++ H P+ + Q
Sbjct: 189 EQAANIKRKDIARCYRLLI--------KELDLHLPVTDSVQ 221
>gi|448605946|ref|ZP_21658539.1| transcription initiation factor TFB [Haloferax sulfurifontis ATCC
BAA-897]
gi|445741269|gb|ELZ92773.1| transcription initiation factor TFB [Haloferax sulfurifontis ATCC
BAA-897]
Length = 335
Score = 146 bits (368), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 91/277 (32%), Positives = 150/277 (54%), Gaps = 11/277 (3%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLST 75
++ D G+ +C++CGLVV +D G EWR F + + + SRVG P ++ LST
Sbjct: 47 VVTDDEHGETVCNDCGLVVTADSVDRGPEWRAF-DAREKDEKSRVGAPTTNTMHDKGLST 105
Query: 76 MIGPGRGDASFDGFG---------MSKYQNR-RTMNSSDRALLNAIREINSMADRINLTK 125
I DA + G + K+ R RT +S +R L A+ EI+ MA + L +
Sbjct: 106 NIDWRDRDAYGNSLGARQRQKMQRLRKWNERFRTRDSKERNLKQALGEIDRMASALGLPE 165
Query: 126 TIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIG 185
+ + A+ ++++ D L GRS + +A++C Y A R GVPR+ EI VS++ K E+
Sbjct: 166 NVRETASVIYRRALDDDLLPGRSIEGVATSCTYAAARMAGVPRSLDEIAEVSRVEKSEVA 225
Query: 186 RCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPIS 245
R ++ I + L V ++ RF S L L + + A + + A E + G+SP+
Sbjct: 226 RTYRYIARELSLEVKPADPEQYVPRFASELGLSDESKMRARQLLKNAKEKGVHSGKSPVG 285
Query: 246 VAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSY 282
+AAAA+Y A+ +++K +Q + D+A ++EVTIR Y
Sbjct: 286 LAAAAVYAAALLTNEKTTQAAVSDVADISEVTIRNRY 322
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 54/96 (56%), Gaps = 1/96 (1%)
Query: 208 MSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEI 267
+ R S L LP V++ A+ I R+A++ D++PGRS VA + Y A++ + RS EI
Sbjct: 154 IDRMASALGLPENVRETASVIYRRALDDDLLPGRSIEGVATSCTYAAARMAGVPRSLDEI 213
Query: 268 GDIAGVAEVTIRQSYKLMYPHAS-KLFPQDFVFHTP 302
+++ V + + ++Y+ + S ++ P D + P
Sbjct: 214 AEVSRVEKSEVARTYRYIARELSLEVKPADPEQYVP 249
>gi|76803041|ref|YP_331136.1| transcription initiation factor TFB 6 [Natronomonas pharaonis DSM
2160]
gi|76558906|emb|CAI50502.2| transcription initiation factor TFB [Natronomonas pharaonis DSM
2160]
Length = 329
Score = 146 bits (368), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 90/271 (33%), Positives = 149/271 (54%), Gaps = 11/271 (4%)
Query: 23 GDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLSTMIGPGRG 82
G+ I GLV+ D ID G EWR F++ + SRVG P ++ L+T I
Sbjct: 51 GELIHEPTGLVLEDEHIDRGPEWRAFTHSERQ-SKSRVGAPTTQTMHDKGLTTQIDWKDK 109
Query: 83 DASFDGFG---------MSKYQNR-RTMNSSDRALLNAIREINSMADRINLTKTIVDRAN 132
DA + K+Q R RT ++ +R L A+ EI+ MA + + +++ + A+
Sbjct: 110 DAYGQSISSDKRSQMNRLRKWQERIRTKDAGERNLQFALSEIDRMASALGVPRSVREVAS 169
Query: 133 NLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGRCFKLIL 192
+++ D ++GRS + A+A LY ACRQE +PR+ E+ V+++ +KEIGR ++ +
Sbjct: 170 VTYRRALDEDLIRGRSIEGAATATLYAACRQESIPRSLDEVAEVARVEQKEIGRTYRYLS 229
Query: 193 KALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIY 252
+ L + +++ RFCS L+L V++ I E ++ G+SP AAAAIY
Sbjct: 230 QELGLEIKPADPKEYVPRFCSELALSEAVEQKTREIIDVTAEEGMLSGKSPTGYAAAAIY 289
Query: 253 MASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
AS ++K++Q+E+ ++A V EVTIR Y+
Sbjct: 290 AASLLCNEKKTQREVAEVAQVTEVTIRNRYQ 320
Score = 45.4 bits (106), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 44/78 (56%)
Query: 208 MSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEI 267
+ R S L +P V++ A+ R+A++ D++ GRS A A +Y A + S RS E+
Sbjct: 151 IDRMASALGVPRSVREVASVTYRRALDEDLIRGRSIEGAATATLYAACRQESIPRSLDEV 210
Query: 268 GDIAGVAEVTIRQSYKLM 285
++A V + I ++Y+ +
Sbjct: 211 AEVARVEQKEIGRTYRYL 228
>gi|448428447|ref|ZP_21584259.1| transcription factor TFIIB cyclin-related protein [Halorubrum
terrestre JCM 10247]
gi|448450283|ref|ZP_21592182.1| transcription factor TFIIB cyclin-related protein [Halorubrum
litoreum JCM 13561]
gi|448481624|ref|ZP_21604975.1| transcription factor TFIIB cyclin-related protein [Halorubrum arcis
JCM 13916]
gi|448507517|ref|ZP_21615028.1| transcription factor TFIIB cyclin-related protein [Halorubrum
distributum JCM 9100]
gi|448523267|ref|ZP_21618620.1| transcription factor TFIIB cyclin-related protein [Halorubrum
distributum JCM 10118]
gi|448530980|ref|ZP_21620814.1| transcription factor TFIIB cyclin-related protein [Halorubrum
hochstenium ATCC 700873]
gi|155212686|gb|ABT17407.1| transcription initiation factor TFB [Halorubrum sp. TP009]
gi|445676412|gb|ELZ28934.1| transcription factor TFIIB cyclin-related protein [Halorubrum
terrestre JCM 10247]
gi|445698472|gb|ELZ50516.1| transcription factor TFIIB cyclin-related protein [Halorubrum
distributum JCM 9100]
gi|445701666|gb|ELZ53642.1| transcription factor TFIIB cyclin-related protein [Halorubrum
distributum JCM 10118]
gi|445707420|gb|ELZ59274.1| transcription factor TFIIB cyclin-related protein [Halorubrum
hochstenium ATCC 700873]
gi|445812135|gb|EMA62131.1| transcription factor TFIIB cyclin-related protein [Halorubrum
litoreum JCM 13561]
gi|445821877|gb|EMA71661.1| transcription factor TFIIB cyclin-related protein [Halorubrum arcis
JCM 13916]
Length = 324
Score = 146 bits (368), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 95/278 (34%), Positives = 151/278 (54%), Gaps = 13/278 (4%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTF-SNEKSGVDPSRVGGPENPLLNGSDLS 74
+I D G+ +CS+CGLVV +D G EWR F S EK + SRVG P ++ LS
Sbjct: 37 VINDEEHGETVCSDCGLVVEADSVDRGPEWRAFDSREKD--EKSRVGAPTTNTMHDKGLS 94
Query: 75 TMIGPGRGDASFDGFG---------MSKYQNR-RTMNSSDRALLNAIREINSMADRINLT 124
T I DA G + K+ R RT +S +R L A+ EI+ MA L
Sbjct: 95 TNIDWRDKDAYGRSLGARQRQKMQRLRKWNERFRTRDSKERNLKQALGEIDRMASAQGLP 154
Query: 125 KTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEI 184
+ + A+ ++++ D L GRS + ++++C+Y A R GVPR+ EI VS++ K EI
Sbjct: 155 DNVRETASVIYRRALDEDLLPGRSIEGVSTSCVYAAARMAGVPRSLDEIADVSRVEKAEI 214
Query: 185 GRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPI 244
R ++ +++ L+ V ++ RF S+L L + A + R A E + G+SP+
Sbjct: 215 ARTYRYVVRELKLEVKPADPEQYVPRFASDLELSEESEMRAKSLLRNAKEKGVHSGKSPV 274
Query: 245 SVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSY 282
+AAAA+Y A+ +++K +Q + ++A ++EVTIR Y
Sbjct: 275 GLAAAAVYAAALLTNEKTTQAAVSEVADISEVTIRNRY 312
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 48/78 (61%)
Query: 208 MSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEI 267
+ R S LP+ V++ A+ I R+A++ D++PGRS V+ + +Y A++ + RS EI
Sbjct: 144 IDRMASAQGLPDNVRETASVIYRRALDEDLLPGRSIEGVSTSCVYAAARMAGVPRSLDEI 203
Query: 268 GDIAGVAEVTIRQSYKLM 285
D++ V + I ++Y+ +
Sbjct: 204 ADVSRVEKAEIARTYRYV 221
>gi|433590594|ref|YP_007280090.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natrinema pellirubrum DSM
15624]
gi|448332002|ref|ZP_21521251.1| Transcription factor TFIIB cyclin-related protein [Natrinema
pellirubrum DSM 15624]
gi|448384822|ref|ZP_21563557.1| Transcription factor TFIIB cyclin-related protein [Haloterrigena
thermotolerans DSM 11522]
gi|433305374|gb|AGB31186.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natrinema pellirubrum DSM
15624]
gi|445628140|gb|ELY81450.1| Transcription factor TFIIB cyclin-related protein [Natrinema
pellirubrum DSM 15624]
gi|445657826|gb|ELZ10650.1| Transcription factor TFIIB cyclin-related protein [Haloterrigena
thermotolerans DSM 11522]
Length = 319
Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 93/278 (33%), Positives = 149/278 (53%), Gaps = 11/278 (3%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLST 75
++ D G+++C ECGLV+ ID G EWR F N + + SRVG P ++ L+T
Sbjct: 31 IVHDPDRGERVCEECGLVLNADPIDYGPEWRAF-NAQEHDELSRVGAPLTQSMHDRGLTT 89
Query: 76 MIGPGRGDA-----SFDGFG----MSKYQNR-RTMNSSDRALLNAIREINSMADRINLTK 125
I DA S D G + +Q R RT N+ +R L A+ EI+ M + + K
Sbjct: 90 TIDWRNKDANGHSMSADKHGQLHRLRVWQERIRTKNAGERNLKYALSEIDRMVSALGVPK 149
Query: 126 TIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIG 185
+ + A+ +++Q + ++GRS + +A+A LY ACR+E +PR+ +E+ AVS++ ++EIG
Sbjct: 150 PVKETASVIYRQALEQDLIRGRSIEGVATASLYTACRKEDIPRSLEEVTAVSRVEQREIG 209
Query: 186 RCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPIS 245
R ++ I L +++ F+ RFCS L + V+ A I + E + G+SP
Sbjct: 210 RTYRYIADELGINLEPTNPRQFVPRFCSELDVGTDVETKAVEIIDRTTEQGLHSGKSPTG 269
Query: 246 VAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
AAAAIY A + Q+ + D A VT+R Y+
Sbjct: 270 FAAAAIYAAGLLCDETIPQRAVADTAQTTVVTVRNRYR 307
>gi|448561229|ref|ZP_21634581.1| transcription initiation factor TFB [Haloferax prahovense DSM
18310]
gi|448582139|ref|ZP_21645643.1| transcription initiation factor TFB [Haloferax gibbonsii ATCC
33959]
gi|448625327|ref|ZP_21671094.1| transcription initiation factor TFB [Haloferax denitrificans ATCC
35960]
gi|445721461|gb|ELZ73129.1| transcription initiation factor TFB [Haloferax prahovense DSM
18310]
gi|445731787|gb|ELZ83370.1| transcription initiation factor TFB [Haloferax gibbonsii ATCC
33959]
gi|445749089|gb|EMA00535.1| transcription initiation factor TFB [Haloferax denitrificans ATCC
35960]
Length = 335
Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 91/277 (32%), Positives = 150/277 (54%), Gaps = 11/277 (3%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLST 75
++ D G+ +C++CGLVV +D G EWR F + + + SRVG P ++ LST
Sbjct: 47 VVTDDEHGETVCNDCGLVVTADSVDRGPEWRAF-DAREKDEKSRVGAPTTNTMHDKGLST 105
Query: 76 MIGPGRGDASFDGFG---------MSKYQNR-RTMNSSDRALLNAIREINSMADRINLTK 125
I DA + G + K+ R RT +S +R L A+ EI+ MA + L +
Sbjct: 106 NIDWRDRDAYGNSLGARQRQKMQRLRKWNERFRTRDSKERNLKQALGEIDRMASALGLPE 165
Query: 126 TIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIG 185
+ + A+ ++++ D L GRS + +A++C Y A R GVPR+ EI VS++ K E+
Sbjct: 166 NVRETASVIYRRALDDDLLPGRSIEGVATSCTYAAARMAGVPRSLDEIAEVSRVEKSEVA 225
Query: 186 RCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPIS 245
R ++ I + L V ++ RF S L L + + A + + A E + G+SP+
Sbjct: 226 RTYRYIARELSLEVKPADPEQYVPRFASELGLSDESKMRARQLLKNAKEKGVHSGKSPVG 285
Query: 246 VAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSY 282
+AAAA+Y A+ +++K +Q + D+A ++EVTIR Y
Sbjct: 286 LAAAAVYAAALLTNEKTTQAAVSDVADISEVTIRNRY 322
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 54/96 (56%), Gaps = 1/96 (1%)
Query: 208 MSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEI 267
+ R S L LP V++ A+ I R+A++ D++PGRS VA + Y A++ + RS EI
Sbjct: 154 IDRMASALGLPENVRETASVIYRRALDDDLLPGRSIEGVATSCTYAAARMAGVPRSLDEI 213
Query: 268 GDIAGVAEVTIRQSYKLMYPHAS-KLFPQDFVFHTP 302
+++ V + + ++Y+ + S ++ P D + P
Sbjct: 214 AEVSRVEKSEVARTYRYIARELSLEVKPADPEQYVP 249
>gi|448302684|ref|ZP_21492657.1| Transcription factor TFIIB cyclin-related protein [Natronorubrum
sulfidifaciens JCM 14089]
gi|445595257|gb|ELY49368.1| Transcription factor TFIIB cyclin-related protein [Natronorubrum
sulfidifaciens JCM 14089]
Length = 316
Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 91/278 (32%), Positives = 151/278 (54%), Gaps = 11/278 (3%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLST 75
++ D G+++C ECGLV+ + ID G EWR F N + + SRVG P ++ L+T
Sbjct: 29 IVHDPDRGERVCKECGLVLTEDPIDYGPEWRAF-NAQEHDELSRVGAPLTQSMHDRGLTT 87
Query: 76 MIGPGRGDA-----SFDGFG----MSKYQNR-RTMNSSDRALLNAIREINSMADRINLTK 125
I DA S D G + +Q R RT N+ +R L A+ EI+ M + + K
Sbjct: 88 TIDWRNKDANGHSMSADKHGQLHRLRVWQERIRTKNAGERNLKYALSEIDRMVSALGVPK 147
Query: 126 TIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIG 185
+ + A+ +++Q + ++GRS + +A++ LY ACR+E +PR+ +E+ AVS++ ++EIG
Sbjct: 148 PVKETASVIYRQALEQDLIRGRSIEGVATSALYTACRKEDIPRSLEEVTAVSRVDQREIG 207
Query: 186 RCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPIS 245
R ++ I L+ +++ F+ RFCS L + V+ A I + + + G+SP
Sbjct: 208 RTYRYIADELDINLEPTNPRQFVPRFCSELDVDKDVETKAVEIIDETTQQGLHSGKSPTG 267
Query: 246 VAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
AAAAIY A + Q+ + D A VT+R Y+
Sbjct: 268 FAAAAIYAAGLLCDETIPQRAVADTAQTTVVTVRNRYR 305
>gi|448454975|ref|ZP_21594377.1| transcription factor TFIIB cyclin-related protein [Halorubrum
lipolyticum DSM 21995]
gi|445814355|gb|EMA64320.1| transcription factor TFIIB cyclin-related protein [Halorubrum
lipolyticum DSM 21995]
Length = 345
Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 98/301 (32%), Positives = 157/301 (52%), Gaps = 44/301 (14%)
Query: 26 ICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLSTMIGPGRGDA- 84
+C +CGLV+ ++ ID G EWR F N SRVG P ++ L+T I DA
Sbjct: 42 VCEDCGLVLDEQNIDRGPEWRAF-NHSERQSKSRVGAPITETMHDKGLTTTIDWKDKDAY 100
Query: 85 -----------------------SFDG------FGMS------------KYQNR-RTMNS 102
+ D F +S K+Q R RT ++
Sbjct: 101 GRSLSSEKRSQMHRLRKWQERIRTKDAGERNLQFALSEIXKRSQMHRLRKWQERIRTKDA 160
Query: 103 SDRALLNAIREINSMADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACR 162
+R L A+ EI+ MA + + +++ + A+ ++++ + ++GRS + +++A LY ACR
Sbjct: 161 GERNLQFALSEIDRMASALGVPRSVREVASVIYRRALNEDLIRGRSIEGVSTAALYAACR 220
Query: 163 QEGVPRTFKEICAVSKISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQ 222
QEG+PR+ E+ VS++ +KEIGR ++ I + L + + F+ RF S+L L VQ
Sbjct: 221 QEGIPRSLDEVADVSRVPQKEIGRTYRYISQELGLELKPVDPKQFVPRFASSLELSEEVQ 280
Query: 223 KAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSY 282
AT I + E ++ G+SP AAAAIY AS ++K++Q+E+ D+A V EVTIR Y
Sbjct: 281 SKATEIIDVSAEQGLLSGKSPTGFAAAAIYAASLLCNEKKTQREVADVAQVTEVTIRNRY 340
Query: 283 K 283
+
Sbjct: 341 Q 341
>gi|292654958|ref|YP_003534855.1| transcription initiation factor TFB [Haloferax volcanii DS2]
gi|448292824|ref|ZP_21483145.1| transcription initiation factor TFB [Haloferax volcanii DS2]
gi|448543167|ref|ZP_21624807.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-646]
gi|448550042|ref|ZP_21628647.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-645]
gi|448559604|ref|ZP_21633678.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-644]
gi|448572225|ref|ZP_21640218.1| transcription initiation factor TFB [Haloferax lucentense DSM
14919]
gi|448596951|ref|ZP_21654089.1| transcription initiation factor TFB [Haloferax alexandrinus JCM
10717]
gi|291371057|gb|ADE03284.1| transcription initiation factor TFB [Haloferax volcanii DS2]
gi|445571799|gb|ELY26342.1| transcription initiation factor TFB [Haloferax volcanii DS2]
gi|445706914|gb|ELZ58784.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-646]
gi|445710994|gb|ELZ62789.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-644]
gi|445713090|gb|ELZ64871.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-645]
gi|445720817|gb|ELZ72488.1| transcription initiation factor TFB [Haloferax lucentense DSM
14919]
gi|445740832|gb|ELZ92337.1| transcription initiation factor TFB [Haloferax alexandrinus JCM
10717]
Length = 335
Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 91/277 (32%), Positives = 150/277 (54%), Gaps = 11/277 (3%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLST 75
++ D G+ +C++CGLVV +D G EWR F + + + SRVG P ++ LST
Sbjct: 47 VVTDDEHGETVCNDCGLVVTADSVDRGPEWRAF-DAREKDEKSRVGAPTTNTMHDKGLST 105
Query: 76 MIGPGRGDASFDGFG---------MSKYQNR-RTMNSSDRALLNAIREINSMADRINLTK 125
I DA + G + K+ R RT +S +R L A+ EI+ MA + L +
Sbjct: 106 NIDWRDRDAYGNSLGARQRQKMQRLRKWNERFRTRDSKERNLKQALGEIDRMASALGLPE 165
Query: 126 TIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIG 185
+ + A+ ++++ D L GRS + +A++C Y A R GVPR+ EI VS++ K E+
Sbjct: 166 NVRETASVIYRRALDDDLLPGRSIEGVATSCTYAAARMAGVPRSLDEIAEVSRVEKSEVA 225
Query: 186 RCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPIS 245
R ++ I + L V ++ RF S L L + + A + + A E + G+SP+
Sbjct: 226 RTYRYIARELSLEVKPADPEQYVPRFASELGLSDESKMRARQLLKNAKEKGVHSGKSPVG 285
Query: 246 VAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSY 282
+AAAA+Y A+ +++K +Q + D+A ++EVTIR Y
Sbjct: 286 LAAAAVYAAALLTNEKTTQAAVSDVADISEVTIRNRY 322
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 54/96 (56%), Gaps = 1/96 (1%)
Query: 208 MSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEI 267
+ R S L LP V++ A+ I R+A++ D++PGRS VA + Y A++ + RS EI
Sbjct: 154 IDRMASALGLPENVRETASVIYRRALDDDLLPGRSIEGVATSCTYAAARMAGVPRSLDEI 213
Query: 268 GDIAGVAEVTIRQSYKLMYPHAS-KLFPQDFVFHTP 302
+++ V + + ++Y+ + S ++ P D + P
Sbjct: 214 AEVSRVEKSEVARTYRYIARELSLEVKPADPEQYVP 249
>gi|448613363|ref|ZP_21663243.1| transcription initiation factor TFB [Haloferax mucosum ATCC
BAA-1512]
gi|445740260|gb|ELZ91766.1| transcription initiation factor TFB [Haloferax mucosum ATCC
BAA-1512]
Length = 335
Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 91/277 (32%), Positives = 150/277 (54%), Gaps = 11/277 (3%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLST 75
++ D G+ +C++CGLVV +D G EWR F + + + SRVG P ++ LST
Sbjct: 47 VVTDDEHGETVCNDCGLVVTADSVDRGPEWRAF-DAREKDEKSRVGAPTTNTMHDKGLST 105
Query: 76 MIGPGRGDASFDGFG---------MSKYQNR-RTMNSSDRALLNAIREINSMADRINLTK 125
I DA + G + K+ R RT +S +R L A+ EI+ MA + L +
Sbjct: 106 NIDWRDRDAYGNSLGARQRQKMQRLRKWNERFRTRDSKERNLKQALGEIDRMASALGLPE 165
Query: 126 TIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIG 185
+ + A+ ++++ D L GRS + +A++C Y A R GVPR+ EI VS++ K E+
Sbjct: 166 NVRETASVIYRRALDDDLLPGRSIEGVATSCTYAAARMAGVPRSLDEIAEVSRVEKSEVA 225
Query: 186 RCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPIS 245
R ++ I + L V ++ RF S L L + + A + + A E + G+SP+
Sbjct: 226 RTYRYIARELSLEVKPADPEQYVPRFASELGLSDESKMRARKLLKNAKEKGVHSGKSPVG 285
Query: 246 VAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSY 282
+AAAA+Y A+ +++K +Q + D+A ++EVTIR Y
Sbjct: 286 LAAAAVYAAALLTNEKTTQAAVSDVADISEVTIRNRY 322
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 54/96 (56%), Gaps = 1/96 (1%)
Query: 208 MSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEI 267
+ R S L LP V++ A+ I R+A++ D++PGRS VA + Y A++ + RS EI
Sbjct: 154 IDRMASALGLPENVRETASVIYRRALDDDLLPGRSIEGVATSCTYAAARMAGVPRSLDEI 213
Query: 268 GDIAGVAEVTIRQSYKLMYPHAS-KLFPQDFVFHTP 302
+++ V + + ++Y+ + S ++ P D + P
Sbjct: 214 AEVSRVEKSEVARTYRYIARELSLEVKPADPEQYVP 249
>gi|448732993|ref|ZP_21715239.1| transcription factor TFIIB cyclin-related protein [Halococcus
salifodinae DSM 8989]
gi|445803326|gb|EMA53623.1| transcription factor TFIIB cyclin-related protein [Halococcus
salifodinae DSM 8989]
Length = 351
Score = 145 bits (366), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 89/280 (31%), Positives = 150/280 (53%), Gaps = 11/280 (3%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLST 75
L D G++ C+ECGLVV + ID+G+EW S E+ + SRVG P P ++ LST
Sbjct: 61 LEHDPEHGERACTECGLVVDEDEIDLGAEWTAHSAEEQQ-ERSRVGSPVTPTMHDKGLST 119
Query: 76 MIGPGRGDASFDGFGMS---KYQNRRTMNS-------SDRALLNAIREINSMADRINLTK 125
I DA + K Q RT +S +R L + + EI+ MA + L
Sbjct: 120 EIDWRDQDARGNPLSTRQRRKMQRLRTWHSRSQTDGTQERNLRHGLGEIDRMASALGLPA 179
Query: 126 TIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIG 185
+I + A+ ++++V D L GRS +++++A LY A RQ R+ I V+++ K+ IG
Sbjct: 180 SIRETASVIYRRVIDENLLIGRSVESVSAAALYAATRQSTSARSLDGIVTVARMDKQSIG 239
Query: 186 RCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPIS 245
R ++ I + L ++ D + R CS L L +++ + + A+ + + G++P+
Sbjct: 240 RTYRYISRELGLEIEPPDPTDHLPRLCSVLDLSTEIEQQSRELLEIAIAAEAISGKNPVG 299
Query: 246 VAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLM 285
+AAAA+Y S +K +Q I ++A V++VTIR Y+ +
Sbjct: 300 LAAAAVYAGSLLCKEKVTQSSISEVASVSKVTIRNRYQEL 339
>gi|448666488|ref|ZP_21685133.1| transcription initiation factor IIB [Haloarcula amylolytica JCM
13557]
gi|445771619|gb|EMA22675.1| transcription initiation factor IIB [Haloarcula amylolytica JCM
13557]
Length = 322
Score = 145 bits (366), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 93/278 (33%), Positives = 149/278 (53%), Gaps = 11/278 (3%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLST 75
++ D G+ +C +CGLVV + ID G EWR F N SRVG P +++ LST
Sbjct: 36 VVTDSEHGETVCEDCGLVVEEDEIDHGPEWRAF-NSAEKDRKSRVGAPTTNMMHDKGLST 94
Query: 76 MIGPGRGDA---SFDGFGMSKYQNRRTMN-------SSDRALLNAIREINSMADRINLTK 125
IG DA S K Q RT N S +R L A+ EI+ MA + L +
Sbjct: 95 NIGWQNKDAYGRSLSSEQRQKMQRLRTWNERFRTRDSKERNLKQALGEIDRMASALGLPQ 154
Query: 126 TIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIG 185
+ + A+ ++++ L GRS + +A++ LY A R G PR+ E+ VS++ K E+
Sbjct: 155 NVRETASVIYRRALGDDLLPGRSIEGVATSALYAAARMAGNPRSLDEMARVSRVEKMELT 214
Query: 186 RCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPIS 245
R ++ I++ L V ++ RF S+L L Q+ A + A + ++ G+SP+
Sbjct: 215 RTYRYIVRELSLEVQPADPEHYLPRFISDLGLSEETQRQARDLIEGARQSGMLSGKSPVG 274
Query: 246 VAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
+AAAA+Y A+ +++K +Q ++ D+A ++EVTIR YK
Sbjct: 275 IAAAAVYAAALLTNEKVTQSQVSDVADISEVTIRNRYK 312
>gi|222478511|ref|YP_002564748.1| transcription factor TFIIB cyclin-related [Halorubrum lacusprofundi
ATCC 49239]
gi|222451413|gb|ACM55678.1| Transcription factor TFIIB cyclin-related [Halorubrum lacusprofundi
ATCC 49239]
Length = 330
Score = 145 bits (366), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 89/265 (33%), Positives = 140/265 (52%), Gaps = 6/265 (2%)
Query: 22 AGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLSTMIGPG- 80
A +++C++CGLVV ID G EWR+F ++ + +P R G P + LST IG
Sbjct: 62 AAERVCTDCGLVVEADRIDHGPEWRSFDDDDT--NPKRTGAPLTRSRHDRGLSTEIGRST 119
Query: 81 --RGDASFDGFGMSKYQNRRTMNSS-DRALLNAIREINSMADRINLTKTIVDRANNLFKQ 137
+G M NR +++ DR + A EI + + L ++ D A LF
Sbjct: 120 KVKGRKRRRLARMRTQHNRAQISTKRDRNKVYAYTEIRRLTGALELPDSVRDTACTLFAS 179
Query: 138 VHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGRCFKLILKALET 197
D L+GRS + A+AC+Y+ACR V RT EICA +K ++ E F + + L
Sbjct: 180 AQDESLLRGRSLEGFAAACVYVACRTADVARTVGEICAEAKATEAEHRAAFDAMNRELGL 239
Query: 198 SVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQA 257
+ +++ RF S L V++ A +A++AVE I GR+P+ VAAA +Y A++
Sbjct: 240 PIAPTGPAEYLPRFASELDCDADVERRAGELAKRAVEEGISNGRNPVGVAAACLYTAARE 299
Query: 258 SSDKRSQKEIGDIAGVAEVTIRQSY 282
+ +Q+E D+A V VT+R++Y
Sbjct: 300 LGAECTQQEAADVADVTPVTVRRTY 324
>gi|352682668|ref|YP_004893192.1| transcription initiation factor B [Thermoproteus tenax Kra 1]
gi|269990954|emb|CAP46908.1| transcription initiation factor IIB [Thermoproteus tenax Kra 1]
gi|350275467|emb|CCC82114.1| transcription initiation factor B [Thermoproteus tenax Kra 1]
Length = 332
Score = 145 bits (366), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 89/278 (32%), Positives = 152/278 (54%), Gaps = 12/278 (4%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLST 75
+ +Y G+ +C CG V+ + ++D+G EWR F+NE+ G +R G P L++ + L+T
Sbjct: 44 FVYNYERGEIVCVVCGTVISENLVDLGPEWRAFTNEEKG-QRARTGAPITRLVSEA-LTT 101
Query: 76 MIGPGRGDAS---------FDGFGMSKYQNR-RTMNSSDRALLNAIREINSMADRINLTK 125
+I D S + + K+Q R R S +R + A +E+ + + + +
Sbjct: 102 VIDWRDRDVSGKELDLKRKLEVIRLRKWQTRARVQTSYERNFVQAAQELERLKSSMGVPR 161
Query: 126 TIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIG 185
V++A +++Q + + ++GRS +A+A+A LY+ACR PR E+ +K S++E+
Sbjct: 162 PCVEQALEIYRQALEKELVRGRSVEAMAAAALYMACRMLKTPRPLDELIRYTKASRREVA 221
Query: 186 RCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPIS 245
RC++L+L+ L V + ++SR L L V K A I +A + + G+ P
Sbjct: 222 RCYRLLLRELNVRVPISDPVLYISRVAEQLKLTGDVVKTAIDIINRAKKAGLTAGKDPAG 281
Query: 246 VAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
+AAAA+Y+AS D R+QK+ AGV EVT+R YK
Sbjct: 282 LAAAAVYIASLLHGDNRTQKDFAVAAGVTEVTVRNRYK 319
>gi|448304757|ref|ZP_21494693.1| transcription factor TFIIB cyclin-like protein [Natronorubrum
sulfidifaciens JCM 14089]
gi|445590138|gb|ELY44359.1| transcription factor TFIIB cyclin-like protein [Natronorubrum
sulfidifaciens JCM 14089]
Length = 356
Score = 145 bits (366), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 98/306 (32%), Positives = 155/306 (50%), Gaps = 39/306 (12%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTF----SNEKSGV---------------- 55
L+ D G+ +C +CGLVV + +D G EWR F NEKS V
Sbjct: 38 LVVDDEHGETVCEDCGLVVEEDSVDRGPEWRAFDAAEKNEKSRVGAPTTNTMHDXRGPEW 97
Query: 56 ---------DPSRVGGPENPLLNGSDLSTMIGPGRGDASFDGFG---------MSKYQNR 97
+ SRVG P ++ LST I DA + G + K+ R
Sbjct: 98 RAFDAAEKNEKSRVGAPTTNTMHDKGLSTNIDWRNKDAYGNSLGSRQREKMQRLRKWNER 157
Query: 98 -RTMNSSDRALLNAIREINSMADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASAC 156
RT +S +R L A+ EI+ MA + L + + A+ ++++ D L GRS + +++AC
Sbjct: 158 FRTRDSKERNLKQALGEIDRMASALGLPTNVRETASVIYRRALDEDLLPGRSIEGVSTAC 217
Query: 157 LYIACRQEGVPRTFKEICAVSKISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLS 216
+Y A RQ GVPR+ EI VS++ K EI R ++ +++ L V ++ RF S L
Sbjct: 218 VYAAARQAGVPRSLDEIADVSRVEKNEIARTYRYVVRELGLEVQPADPESYVPRFASGLD 277
Query: 217 LPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEV 276
L + + A + + A E + G+SP+ +AAAA+Y A+ +++K +Q + D+A ++EV
Sbjct: 278 LSDEAEHRARGLLQNAKEKGVHSGKSPVGLAAAAVYAAALLTNEKTTQAAVSDVADISEV 337
Query: 277 TIRQSY 282
TIR Y
Sbjct: 338 TIRNRY 343
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 48/78 (61%)
Query: 208 MSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEI 267
+ R S L LP V++ A+ I R+A++ D++PGRS V+ A +Y A++ + RS EI
Sbjct: 175 IDRMASALGLPTNVRETASVIYRRALDEDLLPGRSIEGVSTACVYAAARQAGVPRSLDEI 234
Query: 268 GDIAGVAEVTIRQSYKLM 285
D++ V + I ++Y+ +
Sbjct: 235 ADVSRVEKNEIARTYRYV 252
>gi|448323082|ref|ZP_21512547.1| Transcription factor TFIIB cyclin-related protein [Natronococcus
amylolyticus DSM 10524]
gi|445600711|gb|ELY54717.1| Transcription factor TFIIB cyclin-related protein [Natronococcus
amylolyticus DSM 10524]
Length = 319
Score = 145 bits (366), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 91/278 (32%), Positives = 150/278 (53%), Gaps = 11/278 (3%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLST 75
++ D G+++C ECGLV+ + ID G EWR F N + + SRVG P ++ L+T
Sbjct: 31 IVHDPDRGERVCGECGLVLTEDPIDYGPEWRAF-NAQEHDELSRVGAPLTQSMHDRGLTT 89
Query: 76 MIGPGRGDA-----SFDGFG----MSKYQNR-RTMNSSDRALLNAIREINSMADRINLTK 125
I DA S D G + +Q R RT N+ +R L A+ EI+ M + + K
Sbjct: 90 TIDWRNRDANGHSMSADKHGQLHRLRVWQERIRTKNAGERNLKYALSEIDRMVSALGVPK 149
Query: 126 TIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIG 185
+ + A+ +++Q + ++GRS + +A++ LY ACR+E +PR+ +E+ AVS++ ++EIG
Sbjct: 150 PVKETASVIYRQALEQDLIRGRSIEGVATSALYTACRKEDIPRSLEEVTAVSRVDQREIG 209
Query: 186 RCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPIS 245
R ++ I L+ +++ F+ RFCS L + V+ A I + + G+SP
Sbjct: 210 RTYRYIADELDINLEPTNPRQFVPRFCSELDVDTHVESKAIEIIDETTTQGLHSGKSPTG 269
Query: 246 VAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
AAAAIY A + Q+ + D A VT+R Y+
Sbjct: 270 FAAAAIYAAGLLCEETIPQRAVADTAQTTVVTVRNRYR 307
>gi|389846232|ref|YP_006348471.1| transcription initiation factor TFB [Haloferax mediterranei ATCC
33500]
gi|448616151|ref|ZP_21664861.1| transcription initiation factor TFB [Haloferax mediterranei ATCC
33500]
gi|388243538|gb|AFK18484.1| transcription initiation factor TFB [Haloferax mediterranei ATCC
33500]
gi|445750806|gb|EMA02243.1| transcription initiation factor TFB [Haloferax mediterranei ATCC
33500]
Length = 335
Score = 145 bits (366), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 91/277 (32%), Positives = 150/277 (54%), Gaps = 11/277 (3%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLST 75
++ D G+ +C++CGLVV +D G EWR F + + + SRVG P ++ LST
Sbjct: 47 VVTDDEHGETVCNDCGLVVTADSVDRGPEWRAF-DAREKDEKSRVGAPTTNTMHDKGLST 105
Query: 76 MIGPGRGDASFDGFG---------MSKYQNR-RTMNSSDRALLNAIREINSMADRINLTK 125
I DA + G + K+ R RT +S +R L A+ EI+ MA + L +
Sbjct: 106 NIDWRDRDAYGNSLGARQRQKMQRLRKWNERFRTRDSKERNLKQALGEIDRMASALGLPE 165
Query: 126 TIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIG 185
+ + A+ ++++ D L GRS + +A++C Y A R GVPR+ EI VS++ K E+
Sbjct: 166 NVRETASVIYRRALDDDLLPGRSIEGVATSCTYAAARMAGVPRSLDEIAEVSRVEKSEVA 225
Query: 186 RCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPIS 245
R ++ I + L V ++ RF S L L + + A + + A E + G+SP+
Sbjct: 226 RTYRYIARELSLEVKPADPEQYVPRFASELGLSDESKMRARKLLKNAKEKGVHSGKSPVG 285
Query: 246 VAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSY 282
+AAAA+Y A+ +++K +Q + D+A ++EVTIR Y
Sbjct: 286 LAAAAVYAAALLTNEKTTQAAVSDVADISEVTIRNRY 322
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 54/96 (56%), Gaps = 1/96 (1%)
Query: 208 MSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEI 267
+ R S L LP V++ A+ I R+A++ D++PGRS VA + Y A++ + RS EI
Sbjct: 154 IDRMASALGLPENVRETASVIYRRALDDDLLPGRSIEGVATSCTYAAARMAGVPRSLDEI 213
Query: 268 GDIAGVAEVTIRQSYKLMYPHAS-KLFPQDFVFHTP 302
+++ V + + ++Y+ + S ++ P D + P
Sbjct: 214 AEVSRVEKSEVARTYRYIARELSLEVKPADPEQYVP 249
>gi|289583194|ref|YP_003481660.1| transcription factor TFIIB cyclin-like protein [Natrialba magadii
ATCC 43099]
gi|448283340|ref|ZP_21474616.1| transcription factor TFIIB cyclin-like protein [Natrialba magadii
ATCC 43099]
gi|289532747|gb|ADD07098.1| Transcription factor TFIIB cyclin-related protein [Natrialba
magadii ATCC 43099]
gi|445574256|gb|ELY28759.1| transcription factor TFIIB cyclin-like protein [Natrialba magadii
ATCC 43099]
Length = 349
Score = 145 bits (365), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 94/281 (33%), Positives = 152/281 (54%), Gaps = 13/281 (4%)
Query: 13 DAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTF-SNEKSGVDPSRVGGPENPLLNGS 71
D L+ D + +C++CGLVV + ID G EWR F + EK + SRVG P +++
Sbjct: 59 DGRLMSDTEHAETVCADCGLVVQEGEIDRGPEWRAFDAAEKD--EKSRVGAPTTNMMHDQ 116
Query: 72 DLSTMIGPGRGDA---SFDGFGMSKYQNRRTMN-------SSDRALLNAIREINSMADRI 121
LST IG DA S K Q RT N S +R L A+ EI+ MA +
Sbjct: 117 GLSTNIGWQDKDAYGRSLSSRQRQKMQRLRTWNERFRTRDSKERNLKQALGEIDRMASAL 176
Query: 122 NLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISK 181
L + + A+ ++++ + L GRS + +++A LY + RQ G PR+ EI VS++ K
Sbjct: 177 GLPDNVRETASVIYRRALEEDLLPGRSIEGVSTASLYASARQAGTPRSLDEIAGVSRVEK 236
Query: 182 KEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGR 241
EI R ++ +++ L V ++ RF S+L L + ++ A + A E I G+
Sbjct: 237 DEIARTYRYVIRELGLEVQPADPVSYVPRFASDLDLSDETERRARQLLETAKESGIHSGK 296
Query: 242 SPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSY 282
SP+ +AAAA+Y + +++K +Q ++ ++A ++EVTIR Y
Sbjct: 297 SPVGLAAAAVYAGALLTNEKVTQNDVSEVASISEVTIRNRY 337
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 56/96 (58%), Gaps = 1/96 (1%)
Query: 208 MSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEI 267
+ R S L LP+ V++ A+ I R+A+E D++PGRS V+ A++Y +++ + RS EI
Sbjct: 169 IDRMASALGLPDNVRETASVIYRRALEEDLLPGRSIEGVSTASLYASARQAGTPRSLDEI 228
Query: 268 GDIAGVAEVTIRQSYKLMYPHAS-KLFPQDFVFHTP 302
++ V + I ++Y+ + ++ P D V + P
Sbjct: 229 AGVSRVEKDEIARTYRYVIRELGLEVQPADPVSYVP 264
>gi|448358436|ref|ZP_21547118.1| transcription factor TFIIB cyclin-like protein [Natrialba
chahannaoensis JCM 10990]
gi|445646069|gb|ELY99061.1| transcription factor TFIIB cyclin-like protein [Natrialba
chahannaoensis JCM 10990]
Length = 352
Score = 145 bits (365), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 94/281 (33%), Positives = 152/281 (54%), Gaps = 13/281 (4%)
Query: 13 DAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTF-SNEKSGVDPSRVGGPENPLLNGS 71
D L+ D + +C++CGLVV + ID G EWR F + EK + SRVG P +++
Sbjct: 62 DGRLMSDAEHAETVCADCGLVVQEGEIDRGPEWRAFDAAEKD--EKSRVGAPTTNMMHDQ 119
Query: 72 DLSTMIGPGRGDA---SFDGFGMSKYQNRRTMN-------SSDRALLNAIREINSMADRI 121
LST IG DA S K Q RT N S +R L A+ EI+ MA +
Sbjct: 120 GLSTNIGWQDKDAYGKSLSSRQRQKMQRLRTWNERFRTRDSKERNLKQALGEIDRMASAL 179
Query: 122 NLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISK 181
L + + A+ ++++ + L GRS + +++A LY + RQ G PR+ EI VS++ K
Sbjct: 180 GLPDNVRETASVIYRRALEEDLLPGRSIEGVSTASLYASARQAGTPRSLDEIAGVSRVEK 239
Query: 182 KEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGR 241
EI R ++ +++ L V ++ RF S+L L + ++ A + A E I G+
Sbjct: 240 DEIARTYRYVIRELGLEVKPADPVSYVPRFASDLDLSDETERRARQLLETAKESGIHSGK 299
Query: 242 SPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSY 282
SP+ +AAAA+Y + +++K +Q ++ ++A ++EVTIR Y
Sbjct: 300 SPVGLAAAAVYAGALLTNEKVTQNDVSEVASISEVTIRNRY 340
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 56/96 (58%), Gaps = 1/96 (1%)
Query: 208 MSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEI 267
+ R S L LP+ V++ A+ I R+A+E D++PGRS V+ A++Y +++ + RS EI
Sbjct: 172 IDRMASALGLPDNVRETASVIYRRALEEDLLPGRSIEGVSTASLYASARQAGTPRSLDEI 231
Query: 268 GDIAGVAEVTIRQSYKLMYPHAS-KLFPQDFVFHTP 302
++ V + I ++Y+ + ++ P D V + P
Sbjct: 232 AGVSRVEKDEIARTYRYVIRELGLEVKPADPVSYVP 267
>gi|448456468|ref|ZP_21595237.1| transcription factor TFIIB cyclin-related protein [Halorubrum
lipolyticum DSM 21995]
gi|445811944|gb|EMA61941.1| transcription factor TFIIB cyclin-related protein [Halorubrum
lipolyticum DSM 21995]
Length = 324
Score = 145 bits (365), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 94/278 (33%), Positives = 151/278 (54%), Gaps = 13/278 (4%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTF-SNEKSGVDPSRVGGPENPLLNGSDLS 74
+I D G+ +C++CGLVV +D G EWR F S EK + SRVG P ++ LS
Sbjct: 37 VINDEEHGESVCADCGLVVEADSVDRGPEWRAFDSREKD--EKSRVGAPTTNTMHDKGLS 94
Query: 75 TMIGPGRGDASFDGFG---------MSKYQNR-RTMNSSDRALLNAIREINSMADRINLT 124
T I DA G + K+ R RT +S +R L A+ EI+ MA L
Sbjct: 95 TNIDWRDKDAYGRSLGARQRQKMQRLRKWNERFRTRDSKERNLKQALGEIDRMASAQGLP 154
Query: 125 KTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEI 184
+ + A+ ++++ D L GRS + ++++C+Y A R GVPR+ EI VS++ K EI
Sbjct: 155 DNVRETASVIYRRALDEDLLPGRSIEGVSTSCVYAAARMAGVPRSLDEIADVSRVEKAEI 214
Query: 185 GRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPI 244
R ++ +++ L+ V ++ RF S+L L + A + R A E + G+SP+
Sbjct: 215 ARTYRYVVRELKLEVKPADPEQYVPRFASDLELSEESEMRAKSLLRNAKEKGVHSGKSPV 274
Query: 245 SVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSY 282
+AAAA+Y A+ +++K +Q + ++A ++EVTIR Y
Sbjct: 275 GLAAAAVYAAALLTNEKTTQAAVSEVADISEVTIRNRY 312
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 48/78 (61%)
Query: 208 MSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEI 267
+ R S LP+ V++ A+ I R+A++ D++PGRS V+ + +Y A++ + RS EI
Sbjct: 144 IDRMASAQGLPDNVRETASVIYRRALDEDLLPGRSIEGVSTSCVYAAARMAGVPRSLDEI 203
Query: 268 GDIAGVAEVTIRQSYKLM 285
D++ V + I ++Y+ +
Sbjct: 204 ADVSRVEKAEIARTYRYV 221
>gi|448377625|ref|ZP_21560321.1| transcription factor TFIIB cyclin-like protein [Halovivax asiaticus
JCM 14624]
gi|445655569|gb|ELZ08414.1| transcription factor TFIIB cyclin-like protein [Halovivax asiaticus
JCM 14624]
Length = 323
Score = 145 bits (365), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 94/290 (32%), Positives = 155/290 (53%), Gaps = 13/290 (4%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTF-SNEKSGVDPSRVGGPENPLLNGSDLS 74
L+ D + +C++CGLVV + ID G EWR F S+E+ SRVG P +++ LS
Sbjct: 35 LVSDEEHAETVCADCGLVVEEDEIDRGPEWRAFDSSERD--QKSRVGAPTTNMMHDQGLS 92
Query: 75 TMIGPGRGDA---SFDGFGMSKYQNRRTMN-------SSDRALLNAIREINSMADRINLT 124
T IG DA S K Q RT N S +R L A+ EI+ MA + L
Sbjct: 93 TNIGWQNKDAYGKSLSSRQRQKMQRLRTWNERFRTRDSKERNLKQALGEIDRMASALGLP 152
Query: 125 KTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEI 184
+ + + A+ ++++ + L GRS + +A++ LY A RQ G PR+ EI VS++ + E+
Sbjct: 153 ENVRETASVIYRRALEEDLLPGRSIEGVATSSLYAAARQAGTPRSLDEISQVSRVDRMEL 212
Query: 185 GRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPI 244
R ++ I++ L V ++ RF S+L L ++ + + A + G+SP+
Sbjct: 213 TRTYRYIVRELSLEVKPADPEHYVPRFISDLDLSEETERTSRELLESARGDGVHSGKSPV 272
Query: 245 SVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKLFP 294
+AAAA+Y A+ +++K +Q E+ ++A ++EVTIR YK + + P
Sbjct: 273 GLAAAAVYAAALLTNEKVTQNEVSEVANISEVTIRNRYKELLEASEMAAP 322
>gi|448445487|ref|ZP_21590385.1| transcription factor TFIIB cyclin-related protein [Halorubrum
saccharovorum DSM 1137]
gi|445685011|gb|ELZ37373.1| transcription factor TFIIB cyclin-related protein [Halorubrum
saccharovorum DSM 1137]
Length = 324
Score = 145 bits (365), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 94/278 (33%), Positives = 151/278 (54%), Gaps = 13/278 (4%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTF-SNEKSGVDPSRVGGPENPLLNGSDLS 74
+I D G+ +C++CGLVV +D G EWR F S EK + SRVG P ++ LS
Sbjct: 37 VINDEEHGESVCADCGLVVEADSVDRGPEWRAFDSREKD--EKSRVGAPTTNTMHDKGLS 94
Query: 75 TMIGPGRGDASFDGFG---------MSKYQNR-RTMNSSDRALLNAIREINSMADRINLT 124
T I DA G + K+ R RT +S +R L A+ EI+ MA L
Sbjct: 95 TNIDWRDKDAYGRSLGARQRQKMQRLRKWNERFRTRDSKERNLKQALGEIDRMASAQGLP 154
Query: 125 KTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEI 184
+ + A+ ++++ D L GRS + ++++C+Y A R GVPR+ EI VS++ K EI
Sbjct: 155 DNVRETASVIYRRALDEDLLPGRSIEGVSTSCVYAAARMAGVPRSLDEIADVSRVEKAEI 214
Query: 185 GRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPI 244
R ++ +++ L+ V ++ RF S+L L + A + R A E + G+SP+
Sbjct: 215 ARTYRYVVRELKLEVKPADPEQYVPRFASDLELSEESEMRAKSLLRNAKEKGVHSGKSPV 274
Query: 245 SVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSY 282
+AAAA+Y A+ +++K +Q + ++A ++EVTIR Y
Sbjct: 275 GLAAAAVYAAALLTNEKTTQAAVSEVADISEVTIRNRY 312
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 48/78 (61%)
Query: 208 MSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEI 267
+ R S LP+ V++ A+ I R+A++ D++PGRS V+ + +Y A++ + RS EI
Sbjct: 144 IDRMASAQGLPDNVRETASVIYRRALDEDLLPGRSIEGVSTSCVYAAARMAGVPRSLDEI 203
Query: 268 GDIAGVAEVTIRQSYKLM 285
D++ V + I ++Y+ +
Sbjct: 204 ADVSRVEKAEIARTYRYV 221
>gi|448468113|ref|ZP_21599744.1| transcription factor TFIIB cyclin-related protein [Halorubrum
kocurii JCM 14978]
gi|445810856|gb|EMA60870.1| transcription factor TFIIB cyclin-related protein [Halorubrum
kocurii JCM 14978]
Length = 324
Score = 145 bits (365), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 94/278 (33%), Positives = 151/278 (54%), Gaps = 13/278 (4%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTF-SNEKSGVDPSRVGGPENPLLNGSDLS 74
+I D G+ +C++CGLVV +D G EWR F S EK + SRVG P ++ LS
Sbjct: 37 VINDEEHGESVCADCGLVVEADSVDRGPEWRAFDSREKD--EKSRVGAPTTNTMHDKGLS 94
Query: 75 TMIGPGRGDASFDGFG---------MSKYQNR-RTMNSSDRALLNAIREINSMADRINLT 124
T I DA G + K+ R RT +S +R L A+ EI+ MA L
Sbjct: 95 TNIDWRDKDAYGRSLGARQRQKMQRLRKWNERFRTRDSKERNLKQALGEIDRMASAQGLP 154
Query: 125 KTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEI 184
+ + A+ ++++ D L GRS + ++++C+Y A R GVPR+ EI VS++ K EI
Sbjct: 155 DNVRETASVIYRRALDEDLLPGRSIEGVSTSCVYAAARMAGVPRSLDEIADVSRVEKAEI 214
Query: 185 GRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPI 244
R ++ +++ L+ V ++ RF S+L L + A + R A E + G+SP+
Sbjct: 215 ARTYRYVVRELKLEVKPADPEQYVPRFASDLELSEESEMRAKSLLRNAKEKGVHSGKSPV 274
Query: 245 SVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSY 282
+AAAA+Y A+ +++K +Q + ++A ++EVTIR Y
Sbjct: 275 GLAAAAVYAAALLTNEKTTQAAVSEVADISEVTIRNRY 312
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 48/78 (61%)
Query: 208 MSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEI 267
+ R S LP+ V++ A+ I R+A++ D++PGRS V+ + +Y A++ + RS EI
Sbjct: 144 IDRMASAQGLPDNVRETASVIYRRALDEDLLPGRSIEGVSTSCVYAAARMAGVPRSLDEI 203
Query: 268 GDIAGVAEVTIRQSYKLM 285
D++ V + I ++Y+ +
Sbjct: 204 ADVSRVEKAEIARTYRYV 221
>gi|448472540|ref|ZP_21601164.1| transcription factor TFIIB cyclin-related protein [Halorubrum
aidingense JCM 13560]
gi|445819844|gb|EMA69678.1| transcription factor TFIIB cyclin-related protein [Halorubrum
aidingense JCM 13560]
Length = 323
Score = 145 bits (365), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 94/278 (33%), Positives = 151/278 (54%), Gaps = 13/278 (4%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTF-SNEKSGVDPSRVGGPENPLLNGSDLS 74
+I D G+ +C++CGLVV +D G EWR F S EK + SRVG P ++ LS
Sbjct: 36 VINDEEHGESVCADCGLVVEADSVDRGPEWRAFDSREKD--EKSRVGAPTTNTMHDKGLS 93
Query: 75 TMIGPGRGDASFDGFG---------MSKYQNR-RTMNSSDRALLNAIREINSMADRINLT 124
T I DA G + K+ R RT +S +R L A+ EI+ MA L
Sbjct: 94 TNIDWRDKDAYGRSLGARQRQKMQRLRKWNERFRTRDSKERNLKQALGEIDRMASAQGLP 153
Query: 125 KTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEI 184
+ + A+ ++++ D L GRS + ++++C+Y A R GVPR+ EI VS++ K EI
Sbjct: 154 DNVRETASVIYRRALDEDLLPGRSIEGVSTSCVYAAARMAGVPRSLDEIADVSRVEKAEI 213
Query: 185 GRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPI 244
R ++ +++ L+ V ++ RF S+L L + A + R A E + G+SP+
Sbjct: 214 ARTYRYVVRELKLEVKPADPEQYVPRFASDLELSEESEMRAKSLLRNAKEKGVHSGKSPV 273
Query: 245 SVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSY 282
+AAAA+Y A+ +++K +Q + ++A ++EVTIR Y
Sbjct: 274 GLAAAAVYAAALLTNEKTTQAAVSEVADISEVTIRNRY 311
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 48/78 (61%)
Query: 208 MSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEI 267
+ R S LP+ V++ A+ I R+A++ D++PGRS V+ + +Y A++ + RS EI
Sbjct: 143 IDRMASAQGLPDNVRETASVIYRRALDEDLLPGRSIEGVSTSCVYAAARMAGVPRSLDEI 202
Query: 268 GDIAGVAEVTIRQSYKLM 285
D++ V + I ++Y+ +
Sbjct: 203 ADVSRVEKAEIARTYRYV 220
>gi|433639108|ref|YP_007284868.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Halovivax ruber XH-70]
gi|433290912|gb|AGB16735.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Halovivax ruber XH-70]
Length = 323
Score = 145 bits (365), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 92/289 (31%), Positives = 153/289 (52%), Gaps = 11/289 (3%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLST 75
L+ D + +C++CGLVV + ID G EWR F + + SRVG P +++ LST
Sbjct: 35 LVSDEEHAETVCTDCGLVVEEDEIDRGPEWRAFDSAERD-QKSRVGAPTTNMMHDQGLST 93
Query: 76 MIGPGRGDA---SFDGFGMSKYQNRRTMN-------SSDRALLNAIREINSMADRINLTK 125
IG DA S K Q RT N S +R L A+ EI+ MA + L +
Sbjct: 94 NIGWQNKDAYGKSLSSRQRQKMQRLRTWNERFRTRDSKERNLKQALGEIDRMASALGLPE 153
Query: 126 TIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIG 185
+ + A+ ++++ + L GRS + +A++ LY A RQ G PR+ EI VS++ + E+
Sbjct: 154 NVRETASVIYRRALEEDLLPGRSIEGVATSSLYAAARQAGTPRSLDEISQVSRVDRMELT 213
Query: 186 RCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPIS 245
R ++ I++ L V ++ RF S+L L ++ + + A + G+SP+
Sbjct: 214 RTYRYIVRELSLEVKPADPEHYVPRFISDLDLSEETERTSRELLESARGDGVHSGKSPVG 273
Query: 246 VAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKLFP 294
+AAAA+Y A+ +++K +Q E+ ++A ++EVTIR YK + + P
Sbjct: 274 LAAAAVYAAALLTNEKVTQNEVSEVANISEVTIRNRYKELLEASEMAAP 322
>gi|13541920|ref|NP_111608.1| transcription initiation factor IIB [Thermoplasma volcanium GSS1]
gi|21363019|sp|Q979P7.1|TF2B2_THEVO RecName: Full=Transcription initiation factor IIB 2; Short=TFIIB 2
gi|14325351|dbj|BAB60255.1| transcription initiation factor B [TFB] [Thermoplasma volcanium
GSS1]
Length = 313
Score = 145 bits (365), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 95/289 (32%), Positives = 158/289 (54%), Gaps = 19/289 (6%)
Query: 7 CCYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENP 66
C EH LI DY G+ IC++CG V+ D ID G EWR F +++ +R G P
Sbjct: 20 CHSEH----LIRDYEHGELICADCGAVIEDSFIDQGPEWRAFDSDQDE-RRARTGSPMTY 74
Query: 67 LLNGSDLSTMIG-----------PGRGDASFDGFGMSKYQNR-RTMNSSDRALLNAIREI 114
L + L+T I P + A + + K+ R R N+++R L A++ +
Sbjct: 75 LSHDKGLATEISWSNKDYYGKRIPHKNRAQI--YRVRKWHQRIRVSNAAERNLSLALQLL 132
Query: 115 NSMADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEIC 174
N + ++ + K I + + ++++ + ++GRS ++I A +Y ACR+ +PRT EI
Sbjct: 133 NDIGAKLGIPKDIKETSALIYRKAVEKNLIRGRSIESIVCASIYAACRKVNIPRTLDEIA 192
Query: 175 AVSKISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVE 234
S+++KK+IG+ ++ + K L+ ++ T ++++FC+ L L + I R+A+
Sbjct: 193 KASEVNKKKIGKAYRHLAKELDLNLRPTTPFSYIAQFCNKLDLDKQAIVISEDIVRQAMS 252
Query: 235 LDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
+ I G+ P +AAAAIY+AS R+QKEI I+GV EVTIR YK
Sbjct: 253 MGISSGKGPTGIAAAAIYIASVKVGKPRTQKEIARISGVTEVTIRNRYK 301
>gi|448399559|ref|ZP_21570819.1| Transcription factor TFIIB cyclin-related protein [Haloterrigena
limicola JCM 13563]
gi|445668576|gb|ELZ21203.1| Transcription factor TFIIB cyclin-related protein [Haloterrigena
limicola JCM 13563]
Length = 319
Score = 145 bits (365), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 90/278 (32%), Positives = 152/278 (54%), Gaps = 11/278 (3%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLST 75
++ D G+++C ECGLV+ + ID G EWR F N + + SRVG P ++ L+T
Sbjct: 31 IVHDPDRGERVCEECGLVLTEDPIDYGPEWRAF-NAQEHDNLSRVGAPLTQSMHDRGLTT 89
Query: 76 MIGPGRGDA-----SFDGFG----MSKYQNR-RTMNSSDRALLNAIREINSMADRINLTK 125
I DA S D G + +Q R RT N+ +R L A+ EI+ M + + K
Sbjct: 90 TIDWRNKDANGHSMSADKHGQLHRLRVWQERIRTKNAGERNLKYALSEIDRMVSALGVPK 149
Query: 126 TIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIG 185
+ + A+ +++Q + ++GRS + +A++ LY ACR+EG+PR+ +E+ +VS++ ++EIG
Sbjct: 150 PVKETASVIYRQALEQDLIRGRSIEGVATSALYTACRKEGIPRSLEEVTSVSRVDQREIG 209
Query: 186 RCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPIS 245
R ++ I L+ +++ F+ RFCS L + V+ A I + + + G+SP
Sbjct: 210 RTYRYIADELDINLEPTNPRQFVPRFCSELDVGKDVETKAIEIIDQTTDQGLHSGKSPTG 269
Query: 246 VAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
AAAAIY A + Q+ + + A VT+R Y+
Sbjct: 270 FAAAAIYAAGLLCDETIPQRAVAETAQTTVVTVRNRYR 307
>gi|313127037|ref|YP_004037307.1| transcription initiation factor iib (tfiib) [Halogeometricum
borinquense DSM 11551]
gi|448288496|ref|ZP_21479694.1| transcription initiation factor iib (tfiib) [Halogeometricum
borinquense DSM 11551]
gi|312293402|gb|ADQ67862.1| Transcription initiation factor IIB (TFIIB) [Halogeometricum
borinquense DSM 11551]
gi|445568881|gb|ELY23456.1| transcription initiation factor iib (tfiib) [Halogeometricum
borinquense DSM 11551]
Length = 343
Score = 145 bits (365), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 92/290 (31%), Positives = 157/290 (54%), Gaps = 11/290 (3%)
Query: 6 VCCYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPEN 65
+ C E L+ D G+ +C +CGLVV + ID G EWR F + + SRVG P
Sbjct: 36 LLCPECSSPTLVTDDGRGETVCEDCGLVVDEDEIDRGPEWRAFDSAERD-QKSRVGAPTT 94
Query: 66 PLLNGSDLSTMIGPGRGDA---SFDGFGMSKYQNRRTMN-------SSDRALLNAIREIN 115
+++ LST IG DA S K Q RT N S +R L A+ EI+
Sbjct: 95 NMMHDRGLSTNIGWQNKDAYGNSLSSNQRQKMQRLRTWNERFRTRDSKERNLKQALGEID 154
Query: 116 SMADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICA 175
MA + L +++ + A+ ++++ + L GRS + IA+A L+ A R VPR+ E+
Sbjct: 155 RMASALGLPESVRETASVIYRRALEDDLLPGRSIEGIATASLHAAARMAQVPRSLDEVAH 214
Query: 176 VSKISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVEL 235
VS++ ++E R ++ I++ L + +++ RF S++ +P ++ A + A +
Sbjct: 215 VSRVDEEEFERAYRYIVRELSLEIKPADPTEYLPRFASDIDVPKETERTARELLENAKTV 274
Query: 236 DIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLM 285
I G+SP+ +AAAA+Y A+Q +++K +Q ++ D+ ++EVTIR Y+ +
Sbjct: 275 GIHSGKSPVGLAAAALYAAAQLTNEKVTQSDVSDVTDISEVTIRNRYQEL 324
>gi|126459199|ref|YP_001055477.1| transcription initiation factor IIB [Pyrobaculum calidifontis JCM
11548]
gi|126248920|gb|ABO08011.1| Transcription initiation factor IIB (TFIIB) [Pyrobaculum
calidifontis JCM 11548]
Length = 331
Score = 145 bits (365), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 89/278 (32%), Positives = 154/278 (55%), Gaps = 12/278 (4%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLST 75
+ +Y G+ +C CG VV ++++D+G EWR F++E+ G +R G P L++ + L+T
Sbjct: 43 FVYNYERGEVVCIVCGTVVQEQLLDLGPEWRAFTSEEKG-QRARTGAPLTRLISEA-LTT 100
Query: 76 MIGPGRGDAS---------FDGFGMSKYQNR-RTMNSSDRALLNAIREINSMADRINLTK 125
+I D S + + K+Q R R S +R + A +E+ + + + +
Sbjct: 101 VIDWRDRDVSGKELDIKRKLEVIRLRKWQTRARVQTSYERNFIQAAQELERLKSSMGVPR 160
Query: 126 TIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIG 185
V++A +++Q + + ++GRS +A+A+A LY+ACR +PR E+ +K S++E+
Sbjct: 161 PCVEQALEIYRQALEKELVRGRSVEAMAAAALYMACRMLKMPRPLDELVRYTKASRREVA 220
Query: 186 RCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPIS 245
RC++L+L+ L V + ++SR L L K A I +KA + I G+ P
Sbjct: 221 RCYRLLLRELNVKVPISDPVLYISRIAEQLKLSGEAIKLAIDILQKAKKAGITAGKDPAG 280
Query: 246 VAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
+AAAA+Y+AS D ++QK+ AGV EVT+R YK
Sbjct: 281 LAAAAVYIASLMLGDNKTQKDFAVAAGVTEVTVRNRYK 318
>gi|41615067|ref|NP_963565.1| hypothetical protein NEQ276 [Nanoarchaeum equitans Kin4-M]
gi|40068791|gb|AAR39126.1| NEQ276 [Nanoarchaeum equitans Kin4-M]
Length = 315
Score = 144 bits (364), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 95/286 (33%), Positives = 154/286 (53%), Gaps = 9/286 (3%)
Query: 4 NKVCCYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGP 63
K+ C +I D + G+ IC +CG V+ D+G EWR F +E VD R G P
Sbjct: 7 EKLVCPNCGSENIIYDPKTGEYICKDCGYVIKIE-FDLGPEWRHFDDET--VDRRRGGAP 63
Query: 64 ENPLLNGSDLSTMIGPG------RGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSM 117
+ G LST IG +G+ M K+ +R +++ DR L A+ E+ M
Sbjct: 64 LSYAKVGRGLSTEIGDTSEIYKLKGELKQKFMRMRKWHSRVALSAIDRNLKIALHELKKM 123
Query: 118 ADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVS 177
D++N+ K + + A ++++V + +GR+ + + + LY+ R+ +PRT +E+ +
Sbjct: 124 VDKLNMPKYVEEEAARIYQKVVEKGLARGRNINTLLAGTLYLVIREYNIPRTLEELEKAT 183
Query: 178 KISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDI 237
ISKK+I + ++LI++ L I+ DF+ R+ S L+LP V A I +A + +I
Sbjct: 184 GISKKDIAKAYRLIVRELGIKPKPISPADFVYRYASELNLPPEVTATAIEIIEEAKKKNI 243
Query: 238 VPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
V GR P +AAAA+Y+A+ K+IG+IA V EVTI+ YK
Sbjct: 244 VSGRGPQGIAAAALYIAAIKHGKYVPLKKIGEIAKVTEVTIKNRYK 289
Score = 42.4 bits (98), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 30/128 (23%), Positives = 60/128 (46%), Gaps = 17/128 (13%)
Query: 177 SKISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELD 236
S+++ I R K+ L L+ VD L++P V++ A I +K VE
Sbjct: 102 SRVALSAIDRNLKIALHELKKMVD-------------KLNMPKYVEEEAARIYQKVVEKG 148
Query: 237 IVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPH----ASKL 292
+ GR+ ++ A +Y+ + + R+ +E+ G+++ I ++Y+L+ +
Sbjct: 149 LARGRNINTLLAGTLYLVIREYNIPRTLEELEKATGISKKDIAKAYRLIVRELGIKPKPI 208
Query: 293 FPQDFVFH 300
P DFV+
Sbjct: 209 SPADFVYR 216
>gi|448727279|ref|ZP_21709645.1| transcription initiation factor TFB 2 [Halococcus morrhuae DSM
1307]
gi|445791493|gb|EMA42133.1| transcription initiation factor TFB 2 [Halococcus morrhuae DSM
1307]
Length = 326
Score = 144 bits (364), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 89/280 (31%), Positives = 150/280 (53%), Gaps = 11/280 (3%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLST 75
L D G+ +C+ CGLVV ID G EWR F + + SRVG P +++ LST
Sbjct: 38 LAADSEHGETVCTNCGLVVEADEIDRGPEWRAFDSAERD-QKSRVGAPTTNMMHDKGLST 96
Query: 76 MIGPGRGDASFDGFGMSKYQNR----------RTMNSSDRALLNAIREINSMADRINLTK 125
IG DA + + Q RT +S +R L A+ EI+ MA + L
Sbjct: 97 NIGWQNKDAYGNALSSRQRQKMQRLRTWNERFRTRDSKERNLKQALGEIDRMASALGLPD 156
Query: 126 TIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIG 185
++ + A+ ++++ D L GRS + ++++ LY A RQ G PR+ EI VS++ K E+
Sbjct: 157 SVRETASVIYRRALDEDLLPGRSIEGVSTSALYAAARQAGTPRSLDEIATVSRVGKMELT 216
Query: 186 RCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPIS 245
R ++ +++ L + ++ RF S+L L ++ A + A + I+ G+SP+
Sbjct: 217 RTYRYVVRELGLEIQPADPASYVPRFASDLELSEEAERRARQLLETAKDEGIISGKSPVG 276
Query: 246 VAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLM 285
+AAAA+Y A+ +++K +Q + ++A ++EVTIR YK +
Sbjct: 277 LAAAAVYAAALLTNEKVTQGAVSEVADISEVTIRNRYKEL 316
>gi|448677609|ref|ZP_21688799.1| transcription initiation factor IIB [Haloarcula argentinensis DSM
12282]
gi|448687989|ref|ZP_21693957.1| transcription initiation factor IIB [Haloarcula japonica DSM 6131]
gi|445773284|gb|EMA24317.1| transcription initiation factor IIB [Haloarcula argentinensis DSM
12282]
gi|445779780|gb|EMA30696.1| transcription initiation factor IIB [Haloarcula japonica DSM 6131]
Length = 322
Score = 144 bits (364), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 92/278 (33%), Positives = 149/278 (53%), Gaps = 11/278 (3%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLST 75
++ D G+ +C +CGLVV + ID G EWR F N SRVG P +++ LST
Sbjct: 36 VVTDTEHGETVCEDCGLVVEEDEIDHGPEWRAF-NSAEKDRKSRVGAPTTNMMHDKGLST 94
Query: 76 MIGPGRGDA---SFDGFGMSKYQNRRTMN-------SSDRALLNAIREINSMADRINLTK 125
IG DA S K Q RT N S +R L A+ EI+ MA + L +
Sbjct: 95 NIGWQNKDAYGRSLSSEQRQKMQRLRTWNERFRTRDSKERNLKQALGEIDRMASALGLPQ 154
Query: 126 TIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIG 185
+ + ++ ++++ L GRS + +A++ LY A R G PR+ E+ VS++ K E+
Sbjct: 155 NVRETSSVIYRRALGDDLLPGRSIEGVATSALYAAARMAGNPRSLDEMARVSRVEKMELT 214
Query: 186 RCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPIS 245
R ++ I++ L V ++ RF S+L L Q+ A + A + ++ G+SP+
Sbjct: 215 RTYRYIVRELSLEVQPADPEHYLPRFISDLGLSEETQRQARDLVEGARQSGMLSGKSPVG 274
Query: 246 VAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
+AAAA+Y A+ +++K +Q ++ D+A ++EVTIR YK
Sbjct: 275 IAAAAVYAAALLTNEKVTQSQVSDVADISEVTIRNRYK 312
>gi|452207622|ref|YP_007487744.1| transcription initiation factor TFB [Natronomonas moolapensis
8.8.11]
gi|452083722|emb|CCQ37037.1| transcription initiation factor TFB [Natronomonas moolapensis
8.8.11]
Length = 321
Score = 144 bits (364), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 100/295 (33%), Positives = 152/295 (51%), Gaps = 18/295 (6%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTF-SNEKSGVDPSRVGGPENPLLNGSDLS 74
L D G+ +C +CGLVV + ID G EWR F S EK SRVG P +++ LS
Sbjct: 33 LAADSEHGETVCRDCGLVVEEDEIDRGPEWRAFDSAEKD--QKSRVGAPTTNMMHDKGLS 90
Query: 75 TMIGPGRGDA---SFDGFGMSKYQNRRTMN-------SSDRALLNAIREINSMADRINLT 124
T I DA S D K Q R N S +R L A+ EI+ MA + L
Sbjct: 91 TNIDWRDQDAYGNSLDSRQRQKMQRLRKWNERFRTRDSKERNLKQALGEIDRMASALGLP 150
Query: 125 KTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEI 184
+ + + A+ ++++ D L GRS + +++A +Y A RQ GVPR+ E+ VS++ K EI
Sbjct: 151 ENVRETASVIYRRALDDNLLPGRSIEGVSTASVYAAARQAGVPRSLDEVAGVSRVEKSEI 210
Query: 185 GRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPI 244
R ++ +++ L V ++ RF S+L L + A + A E + G+SP+
Sbjct: 211 ARTYRYVVRELGLEVAPADPESYVPRFASDLDLSEEAENRARKLLGNAKEQGVHSGKSPV 270
Query: 245 SVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKLFPQDFVF 299
+AAAA+Y AS +++K +Q + ++A ++EVTIR Y H QD F
Sbjct: 271 GLAAAAVYAASLLTNEKTTQAAVSEVADISEVTIRNRY-----HELLEAEQDLAF 320
>gi|448739366|ref|ZP_21721381.1| transcription initiation factor TFB 2 [Halococcus thailandensis JCM
13552]
gi|445799961|gb|EMA50330.1| transcription initiation factor TFB 2 [Halococcus thailandensis JCM
13552]
Length = 326
Score = 144 bits (364), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 89/280 (31%), Positives = 150/280 (53%), Gaps = 11/280 (3%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLST 75
L D G+ +C+ CGLVV ID G EWR F + + SRVG P +++ LST
Sbjct: 38 LAADSEHGETVCTNCGLVVEADEIDRGPEWRAFDSAERD-QKSRVGAPTTNMMHDKGLST 96
Query: 76 MIGPGRGDASFDGFGMSKYQNR----------RTMNSSDRALLNAIREINSMADRINLTK 125
IG DA + + Q RT +S +R L A+ EI+ MA + L
Sbjct: 97 NIGWQNKDAYGNALSSRQRQKMQRLRTWNERFRTRDSKERNLKQALGEIDRMASALGLPD 156
Query: 126 TIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIG 185
++ + A+ ++++ D L GRS + ++++ LY A RQ G PR+ EI VS++ K E+
Sbjct: 157 SVRETASVIYRRALDEDLLPGRSIEGVSTSALYAAARQAGTPRSLDEIATVSRVGKMELT 216
Query: 186 RCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPIS 245
R ++ +++ L + ++ RF S+L L ++ A + A + I+ G+SP+
Sbjct: 217 RTYRYVVRELGLEIQPADPASYVPRFASDLELSEEAERRARQLLETAKDEGIISGKSPVG 276
Query: 246 VAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLM 285
+AAAA+Y A+ +++K +Q + ++A ++EVTIR YK +
Sbjct: 277 LAAAAVYAAALLTNEKVTQGAVSEVADISEVTIRNRYKEL 316
>gi|354612022|ref|ZP_09029974.1| Transcription initiation factor IIB [Halobacterium sp. DL1]
gi|353191600|gb|EHB57106.1| Transcription initiation factor IIB [Halobacterium sp. DL1]
Length = 317
Score = 144 bits (364), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 92/292 (31%), Positives = 158/292 (54%), Gaps = 12/292 (4%)
Query: 13 DAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSD 72
D +++D G+ +C++CGLVV + ID G EWR F + K SRVG P ++
Sbjct: 27 DGLVVQDEEHGESVCADCGLVVEEDGIDRGPEWRAF-DSKEKDQKSRVGAPTTNTMHDKG 85
Query: 73 LSTMIGPGRGDASFDGFG---------MSKYQNR-RTMNSSDRALLNAIREINSMADRIN 122
LST I DA + + K+ R RT ++ +R L A+ EI+ MA
Sbjct: 86 LSTNIDWRDKDAYGNSLSSNQRQKMQRLRKWNERFRTRDAKERNLKQALGEIDRMASAQG 145
Query: 123 LTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKK 182
L ++ + A+ ++++ + L GRS + +A++C+Y A RQ GVPR+ EI VS++ K
Sbjct: 146 LPDSVRETASVIYRRALEEDLLPGRSIEGVATSCVYAAARQAGVPRSLDEIADVSRVEKA 205
Query: 183 EIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRS 242
EI R ++ +++ L V ++ RF S+L L + A + + A + + G+S
Sbjct: 206 EIARTYRYVIRELGLEVAPADPESYVPRFASSLELSDEASHRARELLKTAKDKGVHSGKS 265
Query: 243 PISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKLFP 294
P+ +AAAA+Y A+ +++K +Q ++ ++A ++EVTIR Y + A + P
Sbjct: 266 PVGLAAAAVYAAALLTNEKTTQAKVSEVADISEVTIRNRYHELL-EAEETIP 316
>gi|48478412|ref|YP_024118.1| transcription initiation factor IIB [Picrophilus torridus DSM 9790]
gi|48431060|gb|AAT43925.1| transcription initiation factor IIB [Picrophilus torridus DSM 9790]
Length = 304
Score = 144 bits (364), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 96/288 (33%), Positives = 157/288 (54%), Gaps = 15/288 (5%)
Query: 8 CYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPL 67
C E LI DY G+ +C +CG+V+ + ID G EWR F +++ +R G P + L
Sbjct: 9 CPECGSGHLIRDYERGEVLCGDCGIVIEETSIDQGPEWRAFDSDQDE-KRARTGSPMSFL 67
Query: 68 LNGSDLSTMIG-----------PGRGDASFDGFGMSKYQNR-RTMNSSDRALLNAIREIN 115
+ L+T I P + A + + K+ R R N+S+R L A++ +N
Sbjct: 68 SHDKGLATEISWSNRDYYGKRIPHKNRAQI--YRVRKWHQRIRVSNASERNLSLALQLLN 125
Query: 116 SMADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICA 175
++ + K I + A ++++ + ++GRS ++I A +Y ACRQ +PRT EI
Sbjct: 126 DDGSKLGIPKDIKESAALIYRKAVERNLIRGRSIESIVCAAIYAACRQVNIPRTLDEISK 185
Query: 176 VSKISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVEL 235
+ I+KK+IG+ ++ + K L+ ++ T ++S+FC+ L+L V + I R+ E
Sbjct: 186 AADINKKKIGKAYRHLAKELKLNLKPTTPYSYVSQFCNKLNLDKDVIIKSEEIIRRVNET 245
Query: 236 DIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
I G+ P VAAAAIY+A+ S ++QKEI ++GV EVTIR YK
Sbjct: 246 GISAGKGPTGVAAAAIYIAAIISGKPKTQKEISKVSGVTEVTIRNRYK 293
>gi|448364802|ref|ZP_21553379.1| transcription factor TFIIB cyclin-like protein [Natrialba aegyptia
DSM 13077]
gi|445657641|gb|ELZ10466.1| transcription factor TFIIB cyclin-like protein [Natrialba aegyptia
DSM 13077]
Length = 339
Score = 144 bits (364), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 93/278 (33%), Positives = 152/278 (54%), Gaps = 13/278 (4%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTF-SNEKSGVDPSRVGGPENPLLNGSDLS 74
L+ D + +C++CGLVV + ID G EWR F + EK + SRVG P +++ LS
Sbjct: 52 LVSDAEHAETVCTDCGLVVQEGEIDRGPEWRAFDAAEKD--EKSRVGAPTTNMMHDQGLS 109
Query: 75 TMIGPGRGDA---SFDGFGMSKYQNRRTMN-------SSDRALLNAIREINSMADRINLT 124
T IG DA S K Q RT N S +R L A+ EI+ MA + L
Sbjct: 110 TNIGWQDKDAYGRSLSNRQRQKMQRLRTWNERFRTRDSKERNLKQALGEIDRMASALGLP 169
Query: 125 KTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEI 184
+ + + A+ ++++ + L GRS + +++A LY + RQ G PR+ EI VS++ K EI
Sbjct: 170 ENVRETASVIYRRALEEDLLPGRSIEGVSTASLYASARQAGTPRSLDEIAGVSRVEKDEI 229
Query: 185 GRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPI 244
R ++ +++ L V ++ RF S+L L + ++ A + A E I G+SP+
Sbjct: 230 ARTYRYVIRELGLEVQPADPVSYVPRFASDLELSDETERRARTLLETAKESGIHSGKSPV 289
Query: 245 SVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSY 282
+AAAA+Y + +++K +Q ++ ++A ++EVTIR Y
Sbjct: 290 GLAAAAVYAGALLTNEKVTQNDVSEVASISEVTIRNRY 327
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 55/96 (57%), Gaps = 1/96 (1%)
Query: 208 MSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEI 267
+ R S L LP V++ A+ I R+A+E D++PGRS V+ A++Y +++ + RS EI
Sbjct: 159 IDRMASALGLPENVRETASVIYRRALEEDLLPGRSIEGVSTASLYASARQAGTPRSLDEI 218
Query: 268 GDIAGVAEVTIRQSYKLMYPHAS-KLFPQDFVFHTP 302
++ V + I ++Y+ + ++ P D V + P
Sbjct: 219 AGVSRVEKDEIARTYRYVIRELGLEVQPADPVSYVP 254
>gi|448362505|ref|ZP_21551111.1| transcription factor TFIIB cyclin-like protein [Natrialba asiatica
DSM 12278]
gi|445647985|gb|ELZ00949.1| transcription factor TFIIB cyclin-like protein [Natrialba asiatica
DSM 12278]
Length = 341
Score = 144 bits (364), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 93/278 (33%), Positives = 152/278 (54%), Gaps = 13/278 (4%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTF-SNEKSGVDPSRVGGPENPLLNGSDLS 74
L+ D + +C++CGLVV + ID G EWR F + EK + SRVG P +++ LS
Sbjct: 54 LVSDAEHAETVCTDCGLVVQEGEIDRGPEWRAFDAAEKD--EKSRVGAPTTNMMHDQGLS 111
Query: 75 TMIGPGRGDA---SFDGFGMSKYQNRRTMN-------SSDRALLNAIREINSMADRINLT 124
T IG DA S K Q RT N S +R L A+ EI+ MA + L
Sbjct: 112 TNIGWQDKDAYGRSLSNRQRQKMQRLRTWNERFRTRDSKERNLKQALGEIDRMASALGLP 171
Query: 125 KTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEI 184
+ + + A+ ++++ + L GRS + +++A LY + RQ G PR+ EI VS++ K EI
Sbjct: 172 ENVRETASVIYRRALEEDLLPGRSIEGVSTASLYASARQAGTPRSLDEIAGVSRVEKDEI 231
Query: 185 GRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPI 244
R ++ +++ L V ++ RF S+L L + ++ A + A E I G+SP+
Sbjct: 232 ARTYRYVIRELGLEVQPADPVSYVPRFASDLELSDETERRARTLLETAKESGIHSGKSPV 291
Query: 245 SVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSY 282
+AAAA+Y + +++K +Q ++ ++A ++EVTIR Y
Sbjct: 292 GLAAAAVYAGALLTNEKVTQNDVSEVASISEVTIRNRY 329
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 55/96 (57%), Gaps = 1/96 (1%)
Query: 208 MSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEI 267
+ R S L LP V++ A+ I R+A+E D++PGRS V+ A++Y +++ + RS EI
Sbjct: 161 IDRMASALGLPENVRETASVIYRRALEEDLLPGRSIEGVSTASLYASARQAGTPRSLDEI 220
Query: 268 GDIAGVAEVTIRQSYKLMYPHAS-KLFPQDFVFHTP 302
++ V + I ++Y+ + ++ P D V + P
Sbjct: 221 AGVSRVEKDEIARTYRYVIRELGLEVQPADPVSYVP 256
>gi|15789590|ref|NP_279414.1| transcription initiation factor IIB [Halobacterium sp. NRC-1]
gi|169235302|ref|YP_001688502.1| transcription initiation factor TFB [Halobacterium salinarum R1]
gi|14195247|sp|Q9HSB3.1|TF2B6_HALSA RecName: Full=Transcription initiation factor IIB 6; Short=TFIIB 6
gi|10579944|gb|AAG18894.1| transcription initiation factor IIB [Halobacterium sp. NRC-1]
gi|167726368|emb|CAP13149.1| transcription initiation factor TFB [Halobacterium salinarum R1]
Length = 319
Score = 144 bits (363), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 89/277 (32%), Positives = 153/277 (55%), Gaps = 11/277 (3%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLST 75
++ D G+ +C++CGLVV + ID G EWR F + K + SRVG P ++ LST
Sbjct: 32 VVNDEEHGESVCADCGLVVEEDGIDRGPEWRAF-DSKEKDEKSRVGAPTTNTMHDKGLST 90
Query: 76 MIGPGRGDASFDGFG---------MSKYQNR-RTMNSSDRALLNAIREINSMADRINLTK 125
I DA + + K+ R RT ++ +R L A+ EI+ MA + L
Sbjct: 91 NIDWRDKDAYGNSLSSNQRQKMQRLRKWNERFRTRDAKERNLKQALGEIDRMASALGLPD 150
Query: 126 TIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIG 185
+ + A+ ++++ + L GRS + +A++C+Y A RQ GVPR+ EI VS++ K EI
Sbjct: 151 NVRETASVIYRRALEDDLLPGRSIEGVATSCVYAAARQAGVPRSLDEIADVSRVEKAEIA 210
Query: 186 RCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPIS 245
R ++ +++ L V ++ RF S+L L + A + + A + + G+SP+
Sbjct: 211 RTYRYVVRELGLEVAPADPESYVPRFASDLGLSDEASHRARELLKTAKDKGVHSGKSPVG 270
Query: 246 VAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSY 282
+AAAA+Y A+ +++K +Q ++ ++A ++EVTIR Y
Sbjct: 271 LAAAAVYAAALLTNEKTTQAKVSEVADISEVTIRNRY 307
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 49/78 (62%)
Query: 208 MSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEI 267
+ R S L LP+ V++ A+ I R+A+E D++PGRS VA + +Y A++ + RS EI
Sbjct: 139 IDRMASALGLPDNVRETASVIYRRALEDDLLPGRSIEGVATSCVYAAARQAGVPRSLDEI 198
Query: 268 GDIAGVAEVTIRQSYKLM 285
D++ V + I ++Y+ +
Sbjct: 199 ADVSRVEKAEIARTYRYV 216
>gi|448314502|ref|ZP_21504190.1| Transcription factor TFIIB cyclin-related protein [Natronolimnobius
innermongolicus JCM 12255]
gi|445594820|gb|ELY48961.1| Transcription factor TFIIB cyclin-related protein [Natronolimnobius
innermongolicus JCM 12255]
Length = 316
Score = 144 bits (363), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 91/286 (31%), Positives = 151/286 (52%), Gaps = 11/286 (3%)
Query: 8 CYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPL 67
C + A +I D G+++C ECGLV+ + ID G EWR F N + SRVG P
Sbjct: 21 CPDCDTATIIHDPDRGERVCEECGLVLTEDPIDYGPEWRAF-NAQEHDQLSRVGAPLTQS 79
Query: 68 LNGSDLSTMIGPGRGDASFDGFGMSK---------YQNR-RTMNSSDRALLNAIREINSM 117
++ L+T I DA+ K +Q R RT N+ +R L A+ EI+ M
Sbjct: 80 MHDRGLTTTIDWRNKDANGRSMSSEKHGQLHRLRVWQERIRTKNAGERNLKYALSEIDRM 139
Query: 118 ADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVS 177
+ + K + + A+ ++++ + ++GRS + +A++ LY ACR+E +PR+ +E+ AVS
Sbjct: 140 VSALGVPKPVKETASVIYRRALEQDLIRGRSIEGVATSSLYTACRKEDIPRSLEEVTAVS 199
Query: 178 KISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDI 237
++ ++EIGR ++ I L+ +++ F+ RFCS L + V+ A I + + +
Sbjct: 200 RVDQREIGRTYRYIADELDINLEPTNPRQFVPRFCSELDVSKDVETKAVEIIDRTTDQGL 259
Query: 238 VPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
G+SP AAAAIY A + Q+ + D A VT+R Y+
Sbjct: 260 HSGKSPTGFAAAAIYAAGLLCEETIPQRAVADTAQTTVVTVRNRYR 305
>gi|167043157|gb|ABZ07866.1| putative transcription factor TFIIB repeat [uncultured marine
crenarchaeote HF4000_ANIW141J13]
Length = 305
Score = 144 bits (363), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 80/288 (27%), Positives = 156/288 (54%), Gaps = 11/288 (3%)
Query: 5 KVCCYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPE 64
K C + LI D G+ C CG V +R+ G E R+F +++ + R G
Sbjct: 12 KQSCLRCGEKALITDAETGEVFCGACGFVSPERIESPGPERRSFPDDRG--NKERTGVGT 69
Query: 65 NPLLNGSDLSTMIGPGRGDASFDGFGMS--------KYQNRRTMNSS-DRALLNAIREIN 115
+ ++ LST+I P DA+ S + + R+ N DR A E+
Sbjct: 70 SLTIHDQGLSTVINPTNRDATGKPLSSSMKKTLKRLRVWDSRSHNKPIDRNFKQAFNELY 129
Query: 116 SMADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICA 175
+ D+++L+ ++V++A ++++ + K +KGR+ ++ ++ LY ACR+ G PRT K+I
Sbjct: 130 RLKDKLSLSDSVVEKAAYIYRKAINKKLVKGRTISSLMASALYAACREVGTPRTLKDISD 189
Query: 176 VSKISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVEL 235
+ I K+++ ++L++ L+ + ++ + ++R S + + ++ AT + RKA E
Sbjct: 190 TTNIKKRDLASNYRLLVNELDLKIPVVDSVHNVARIASKIGISEKTKRLATELLRKAEES 249
Query: 236 DIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
++ G++P+S+AA A+Y++ + + + SQ+++ + A V EVTIR YK
Sbjct: 250 ELTAGKNPMSLAATALYISCRKTGENYSQRDLAEAASVTEVTIRNRYK 297
Score = 45.1 bits (105), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 43/78 (55%)
Query: 208 MSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEI 267
+ R LSL + V + A +I RKA+ +V GR+ S+ A+A+Y A + R+ K+I
Sbjct: 128 LYRLKDKLSLSDSVVEKAAYIYRKAINKKLVKGRTISSLMASALYAACREVGTPRTLKDI 187
Query: 268 GDIAGVAEVTIRQSYKLM 285
D + + + +Y+L+
Sbjct: 188 SDTTNIKKRDLASNYRLL 205
>gi|433638603|ref|YP_007284363.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Halovivax ruber XH-70]
gi|448373609|ref|ZP_21557695.1| Transcription factor TFIIB cyclin-related protein [Halovivax
asiaticus JCM 14624]
gi|433290407|gb|AGB16230.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Halovivax ruber XH-70]
gi|445661561|gb|ELZ14344.1| Transcription factor TFIIB cyclin-related protein [Halovivax
asiaticus JCM 14624]
Length = 317
Score = 144 bits (363), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 87/268 (32%), Positives = 146/268 (54%), Gaps = 11/268 (4%)
Query: 26 ICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLSTMIGPGRGDAS 85
+C ECGLV+ D ID G EWR F + + + SRVG P ++ L+T I DA+
Sbjct: 39 VCEECGLVLSDEPIDYGPEWRAF-DAREHEELSRVGAPLTQSMHDRGLTTTIDWRNRDAN 97
Query: 86 FDGFGMSK---------YQNR-RTMNSSDRALLNAIREINSMADRINLTKTIVDRANNLF 135
K +Q R RT N+ +R L A+ EI+ M + + K + + A+ ++
Sbjct: 98 GHSMDAGKHGQLHRLRVWQERIRTKNAGERNLKYALSEIDRMVSALGVPKPVKETASVIY 157
Query: 136 KQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGRCFKLILKAL 195
+Q D ++GRS + +A++ LY++CR++ +PR+ +E+ AVS++ ++EIGR ++ I L
Sbjct: 158 RQALDRDLIRGRSIEGVATSALYMSCRKDDIPRSLEEVTAVSRVDQREIGRTYRYIADEL 217
Query: 196 ETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMAS 255
+ +++ F+ RFCS L + + V+ A I + EL + G+SP AAAAIY A
Sbjct: 218 DINLEPTNPRQFVPRFCSELDVSSEVETTAIDIIDETTELGLHSGKSPTGFAAAAIYAAG 277
Query: 256 QASSDKRSQKEIGDIAGVAEVTIRQSYK 283
+ Q+ + + A VT+R Y+
Sbjct: 278 LLCEETIPQRAVAETAQTTVVTVRNRYR 305
>gi|344212001|ref|YP_004796321.1| transcription initiation factor IIB [Haloarcula hispanica ATCC
33960]
gi|343783356|gb|AEM57333.1| transcription initiation factor IIB [Haloarcula hispanica ATCC
33960]
Length = 322
Score = 144 bits (363), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 92/278 (33%), Positives = 149/278 (53%), Gaps = 11/278 (3%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLST 75
++ D G+ +C +CGLVV + ID G EWR F N SRVG P +++ LST
Sbjct: 36 VVTDSEHGETVCEDCGLVVEEDEIDHGPEWRAF-NSAEKDRKSRVGAPTTNMMHDKGLST 94
Query: 76 MIGPGRGDA---SFDGFGMSKYQNRRTMN-------SSDRALLNAIREINSMADRINLTK 125
IG DA S K Q RT N S +R L A+ EI+ MA + L +
Sbjct: 95 NIGWQNKDAYGRSLSSEQRQKMQRLRTWNERFRTRDSKERNLKQALGEIDRMASALGLPQ 154
Query: 126 TIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIG 185
+ + ++ ++++ L GRS + +A++ LY A R G PR+ E+ VS++ K E+
Sbjct: 155 NVRETSSVIYRRALGDDLLPGRSIEGVATSALYAAARMAGNPRSLDEMARVSRVEKMELT 214
Query: 186 RCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPIS 245
R ++ I++ L V ++ RF S+L L Q+ A + A + ++ G+SP+
Sbjct: 215 RTYRYIVRELSLEVQPADPEHYLPRFISDLGLSEETQRQARDLIEGARQSGMLSGKSPVG 274
Query: 246 VAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
+AAAA+Y A+ +++K +Q ++ D+A ++EVTIR YK
Sbjct: 275 IAAAAVYAAALLTNEKVTQSQVSDVADISEVTIRNRYK 312
>gi|448343629|ref|ZP_21532552.1| Transcription factor TFIIB cyclin-related protein [Natrinema gari
JCM 14663]
gi|445622685|gb|ELY76131.1| Transcription factor TFIIB cyclin-related protein [Natrinema gari
JCM 14663]
Length = 329
Score = 144 bits (363), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 93/279 (33%), Positives = 150/279 (53%), Gaps = 15/279 (5%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLST 75
L+ D + +C++CGLVV + ID G EWR F + + SRVG P + + LST
Sbjct: 42 LVADDEHAETVCADCGLVVAESEIDRGPEWRAFDAAERD-EKSRVGAPTTNMRHDQGLST 100
Query: 76 MIGPGRGDASFDGFGMSKYQNR------------RTMNSSDRALLNAIREINSMADRINL 123
IG DA G +S Q RT NS +R L A+ EI+ MA + L
Sbjct: 101 NIGWQDKDAY--GQSLSSRQREKMQRLRTWNERFRTRNSRERNLKQALGEIDRMASALGL 158
Query: 124 TKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKE 183
+ + A+ ++++ + L GRS + +A+A LY A RQ G PR+ EI AVS++ K E
Sbjct: 159 PDDVRETASVIYRRALEDDLLPGRSIEGVATASLYAAARQAGTPRSLDEISAVSRVDKAE 218
Query: 184 IGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSP 243
+ R ++ +++ L V ++ RF S+L L + + A + A E I G+SP
Sbjct: 219 VARTYRYVVRELGLEVQPADPESYVPRFASDLDLADETELRARDLLTTAKEKGIHSGKSP 278
Query: 244 ISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSY 282
+ +AAAA+Y A+ ++++ +Q ++ ++A ++EVTIR Y
Sbjct: 279 VGLAAAAVYAAALLTNEQVTQNDVSEVASISEVTIRNRY 317
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 49/78 (62%)
Query: 208 MSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEI 267
+ R S L LP+ V++ A+ I R+A+E D++PGRS VA A++Y A++ + RS EI
Sbjct: 149 IDRMASALGLPDDVRETASVIYRRALEDDLLPGRSIEGVATASLYAAARQAGTPRSLDEI 208
Query: 268 GDIAGVAEVTIRQSYKLM 285
++ V + + ++Y+ +
Sbjct: 209 SAVSRVDKAEVARTYRYV 226
>gi|397774847|ref|YP_006542393.1| Transcription factor TFIIB cyclin-related protein [Natrinema sp.
J7-2]
gi|397683940|gb|AFO58317.1| Transcription factor TFIIB cyclin-related protein [Natrinema sp.
J7-2]
Length = 329
Score = 144 bits (363), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 93/279 (33%), Positives = 150/279 (53%), Gaps = 15/279 (5%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLST 75
L+ D + +C++CGLVV + ID G EWR F + + SRVG P + + LST
Sbjct: 42 LVADDEHAETVCADCGLVVAESEIDRGPEWRAFDAAERD-EKSRVGAPTTNMRHDQGLST 100
Query: 76 MIGPGRGDASFDGFGMSKYQNR------------RTMNSSDRALLNAIREINSMADRINL 123
IG DA G +S Q RT NS +R L A+ EI+ MA + L
Sbjct: 101 NIGWQDKDAY--GQTLSSRQREKMQRLRTWNERFRTRNSRERNLKQALGEIDRMASALGL 158
Query: 124 TKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKE 183
+ + A+ ++++ + L GRS + +A+A LY A RQ G PR+ EI AVS++ K E
Sbjct: 159 PDDVRETASVIYRRALEADLLPGRSIEGVATASLYAAARQAGTPRSLDEISAVSRVDKAE 218
Query: 184 IGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSP 243
+ R ++ +++ L V ++ RF S+L L + + A + A E I G+SP
Sbjct: 219 VARTYRYVVRELGLEVQPADPESYVPRFASDLDLADETELRARDLLTTAKEKGIHSGKSP 278
Query: 244 ISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSY 282
+ +AAAA+Y A+ ++++ +Q ++ ++A ++EVTIR Y
Sbjct: 279 VGLAAAAVYAAALLTNEQVTQNDVSEVASISEVTIRNRY 317
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 49/78 (62%)
Query: 208 MSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEI 267
+ R S L LP+ V++ A+ I R+A+E D++PGRS VA A++Y A++ + RS EI
Sbjct: 149 IDRMASALGLPDDVRETASVIYRRALEADLLPGRSIEGVATASLYAAARQAGTPRSLDEI 208
Query: 268 GDIAGVAEVTIRQSYKLM 285
++ V + + ++Y+ +
Sbjct: 209 SAVSRVDKAEVARTYRYV 226
>gi|448333191|ref|ZP_21522402.1| transcription initiation factor IIB [Natrinema pellirubrum DSM
15624]
gi|445623529|gb|ELY76934.1| transcription initiation factor IIB [Natrinema pellirubrum DSM
15624]
Length = 370
Score = 144 bits (362), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 99/310 (31%), Positives = 158/310 (50%), Gaps = 42/310 (13%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTF----SNEKSGV---------------- 55
L+ D + +C++C LVV + ID G EWR F +EKS V
Sbjct: 54 LVSDDGRAETVCTDCSLVVEEDEIDRGPEWRAFDAAEKDEKSRVGAPTTNMMHDQGLSTN 113
Query: 56 --------DPSRVGGPENPLLNGSDLSTMIGPGRGDASFDGFGMSKYQNR---------- 97
+ SRVG P +++ LST IG DA G +S Q
Sbjct: 114 IGWQXEKDEKSRVGAPTTNMMHDQGLSTNIGWQDKDAY--GRSLSSRQREKMQRLRTWNE 171
Query: 98 --RTMNSSDRALLNAIREINSMADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASA 155
RT NS +R L A+ EI+ MA + L T+ + ++ ++++ + L GRS + +A+A
Sbjct: 172 RFRTRNSKERNLKQALGEIDRMASALGLPDTVRETSSVIYRRALEEDLLPGRSIEGVATA 231
Query: 156 CLYIACRQEGVPRTFKEICAVSKISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNL 215
LY A RQ G PR+ EI AVS++ K EI R ++ +++ L V ++ RF S+L
Sbjct: 232 SLYAAARQAGTPRSLDEISAVSRVEKAEIARTYRYVVRELGLEVQPADPESYVPRFASDL 291
Query: 216 SLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAE 275
L + ++ A + A E + G+SP+ +AAAA+Y A+ +++K +Q ++ D+A ++E
Sbjct: 292 DLADETERRAHDLLSTAKERGVHSGKSPVGLAAAAVYAAALLTNEKVTQNDVSDVASISE 351
Query: 276 VTIRQSYKLM 285
VTIR YK +
Sbjct: 352 VTIRNRYKEL 361
>gi|401403652|ref|XP_003881529.1| At4g37010, related [Neospora caninum Liverpool]
gi|325115942|emb|CBZ51496.1| At4g37010, related [Neospora caninum Liverpool]
Length = 455
Score = 144 bits (362), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 106/327 (32%), Positives = 160/327 (48%), Gaps = 36/327 (11%)
Query: 4 NKVCCYEHPD----APLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNE-----KSG 54
NK C Y P ++ D +GDQ+C ECGL+V ++V+ EWR FS E + G
Sbjct: 105 NKTCPYCGPARNGAQTIVFDSSSGDQLCRECGLIVEEKVLSEEQEWRNFSAEAASSSRGG 164
Query: 55 VDPSRVGGPENPLLNGSDLSTMI------GPGRGDASFDGFGMSKYQNRRT------MNS 102
D +RVG + L + T + GP G A++ + + T + S
Sbjct: 165 ADRNRVGDALDAWLEDGGIGTTMLVASSGGPLAGKAAWSAKRLQQLHEAATSGLGTGVGS 224
Query: 103 SDRALLNAIREINSMADRINLTKTIVDRANNLFKQV-HDGKNLKGRSNDAIASACLYIAC 161
DR L A I + + L +++RA + K + DG L+ RSN A +Y+AC
Sbjct: 225 GDRQLKVAFNYIRLIGEAFALRDNVLERAKEITKDLMQDGAQLRTRSNATTMLAIIYLAC 284
Query: 162 RQEGVPRTFKEICAVSK-ISKKEIGRCFKLILKALE-----TSVDLITTGDFMSRFCSNL 215
R+ GV RT KE+ + IS+KE+G+ I K L +S + T + R+CS L
Sbjct: 285 REAGVTRTVKELVVYDRAISEKELGKAINRIKKLLPQRGGVSSAESAT--QLLPRYCSRL 342
Query: 216 SLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQ---ASSDKRSQK--EIGDI 270
L V A H+A++A ++ I+ P SVAAAAI++ + AS++ K EI ++
Sbjct: 343 QLSMHVADVAEHVAKRATQV-IISSHRPNSVAAAAIWLVVKLLNASTNPNLPKASEIANV 401
Query: 271 AGVAEVTIRQSYKLMYPHASKLFPQDF 297
G E T+R YK M A L P++F
Sbjct: 402 TGAGEHTLRSIYKDMLDVAEHLLPREF 428
>gi|15790009|ref|NP_279833.1| transcription initiation factor IIB [Halobacterium sp. NRC-1]
gi|169235732|ref|YP_001688932.1| transcription initiation factor TFB [Halobacterium salinarum R1]
gi|14195245|sp|Q9HR45.1|TF2B4_HALSA RecName: Full=Transcription initiation factor IIB 4; Short=TFIIB 4
gi|10580433|gb|AAG19313.1| transcription initiation factor IIB [Halobacterium sp. NRC-1]
gi|167726798|emb|CAP13584.1| transcription initiation factor TFB [Halobacterium salinarum R1]
Length = 328
Score = 144 bits (362), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 93/277 (33%), Positives = 149/277 (53%), Gaps = 11/277 (3%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLST 75
L+ D G+ C ECGLVV + ID G EWR F N + + SRVG P +++ LST
Sbjct: 39 LVTDEDRGETTCGECGLVVEEDGIDHGPEWRAF-NAQEQDEKSRVGAPTTNMMHDKGLST 97
Query: 76 MIGPGRGDASFDGFG---------MSKYQNR-RTMNSSDRALLNAIREINSMADRINLTK 125
IG DA + + K+ R RT NS +R L A+ EI MA L
Sbjct: 98 NIGWQDKDAYGNTLSGRQRRKMQRLRKWNERFRTRNSKERNLKQALGEIERMASAFGLPD 157
Query: 126 TIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIG 185
++ + A+ ++++ L GRS + +A++ LY A RQ PR+ E+ +VS++ + EI
Sbjct: 158 SVRETASVIYRRALGEDLLPGRSIEGVATSALYAAARQANTPRSLDEVASVSRVDRGEIA 217
Query: 186 RCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPIS 245
R ++ + + L V ++ RFCS+L L V++ A + A + I G+SP+
Sbjct: 218 RTYRYVARELSLEVAPTDPASYVPRFCSDLELSGDVERRARDLLAAAADAGITSGKSPVG 277
Query: 246 VAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSY 282
+AAA++Y A+ ++++ +Q E+ +A V+EVTIR Y
Sbjct: 278 LAAASVYAAALLTNERVTQNEVSTVANVSEVTIRNRY 314
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 54/96 (56%), Gaps = 1/96 (1%)
Query: 208 MSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEI 267
+ R S LP+ V++ A+ I R+A+ D++PGRS VA +A+Y A++ ++ RS E+
Sbjct: 146 IERMASAFGLPDSVRETASVIYRRALGEDLLPGRSIEGVATSALYAAARQANTPRSLDEV 205
Query: 268 GDIAGVAEVTIRQSYKLMYPHAS-KLFPQDFVFHTP 302
++ V I ++Y+ + S ++ P D + P
Sbjct: 206 ASVSRVDRGEIARTYRYVARELSLEVAPTDPASYVP 241
>gi|409730105|ref|ZP_11271696.1| transcription factor TFIIB cyclin-related protein [Halococcus
hamelinensis 100A6]
gi|448722749|ref|ZP_21705280.1| transcription factor TFIIB cyclin-related protein [Halococcus
hamelinensis 100A6]
gi|445788886|gb|EMA39587.1| transcription factor TFIIB cyclin-related protein [Halococcus
hamelinensis 100A6]
Length = 327
Score = 144 bits (362), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 89/278 (32%), Positives = 149/278 (53%), Gaps = 11/278 (3%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLST 75
L D G+ +C +CGLVV ID G EWR F + + SRVG P +++ LST
Sbjct: 39 LAADTEHGETVCMDCGLVVETDEIDRGPEWRAFDSAERD-QKSRVGAPTTNMMHDKGLST 97
Query: 76 MIGPGRGDASFDGFGMSKYQNR----------RTMNSSDRALLNAIREINSMADRINLTK 125
IG DA + + Q RT +S +R L A+ EI+ MA + L
Sbjct: 98 NIGWQNKDAYGNALSSRQRQKMQRLRTWNERFRTRDSKERNLKQALGEIDRMASALGLPD 157
Query: 126 TIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIG 185
++ + A+ ++++ D L GRS + ++++ LY A RQ G PR+ EI VS++ K E+
Sbjct: 158 SVRETASVIYRRALDEDLLPGRSIEGVSTSALYAAARQAGTPRSLDEIATVSRVGKMELT 217
Query: 186 RCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPIS 245
R ++ +++ L + ++ RF S+L L ++ A + A + I+ G+SP+
Sbjct: 218 RTYRYVVRELGLEIQPADPASYVPRFASDLDLSEESERRARQLLETAKDEGIISGKSPVG 277
Query: 246 VAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
+AAAA+Y A+ +++K +Q + ++A ++EVTIR YK
Sbjct: 278 LAAAAVYAAALLTNEKVTQGAVSEVADISEVTIRNRYK 315
>gi|257052965|ref|YP_003130798.1| Transcription factor TFIIB cyclin-related [Halorhabdus utahensis
DSM 12940]
gi|256691728|gb|ACV12065.1| Transcription factor TFIIB cyclin-related [Halorhabdus utahensis
DSM 12940]
Length = 334
Score = 144 bits (362), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 88/271 (32%), Positives = 146/271 (53%), Gaps = 13/271 (4%)
Query: 23 GDQICSECGLVVGDRVIDVGSEWRTFS-NEKSGVDPSRVGGPENPLLNGSDLSTMIGPGR 81
G+++C +CG+VV ID G EWR F+ +EK + SRVG P LL+ LST IG
Sbjct: 45 GERVCEQCGIVVESDAIDHGPEWRAFTPSEKD--ERSRVGSPTTKLLHDEGLSTSIGWAD 102
Query: 82 GDASFDGFGMSKYQNR----------RTMNSSDRALLNAIREINSMADRINLTKTIVDRA 131
DAS S+ + R +S DR L A+ EI+ MA + L + + + A
Sbjct: 103 KDASGRTLSSSQREKMSRLRVWDERFRATDSRDRNLKQALGEIDRMASALGLPENVRETA 162
Query: 132 NNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGRCFKLI 191
+ ++++ D L GRS + +A+A LY A RQ G PR+ E +S++ +++ R ++ +
Sbjct: 163 SVIYRRALDEDLLPGRSIEGMATASLYAAARQAGTPRSLDEFEPISRVRRQKYARAYRYL 222
Query: 192 LKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAI 251
+ LE + +++ RF S+L L + +++ A + + + G++P +AA AI
Sbjct: 223 ARQLELGIAPADPAEYLPRFTSDLDLDDDLERQARDLLSELKKTGEHSGKNPTGLAAGAI 282
Query: 252 YMASQASSDKRSQKEIGDIAGVAEVTIRQSY 282
Y A + D+ +Q E+ + A V+EVTIR Y
Sbjct: 283 YAAGLLTGDRITQGEVAETADVSEVTIRDRY 313
Score = 50.8 bits (120), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 51/102 (50%), Gaps = 4/102 (3%)
Query: 208 MSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEI 267
+ R S L LP V++ A+ I R+A++ D++PGRS +A A++Y A++ + RS E
Sbjct: 145 IDRMASALGLPENVRETASVIYRRALDEDLLPGRSIEGMATASLYAAARQAGTPRSLDEF 204
Query: 268 GDIAGVAEVTIRQSYKLMYPHASKLFPQDFVFHTPIHELPQL 309
I+ V RQ Y Y + ++ P LP+
Sbjct: 205 EPISRVR----RQKYARAYRYLARQLELGIAPADPAEYLPRF 242
>gi|448411807|ref|ZP_21576163.1| transcription factor TFIIB cyclin-related protein [Halosimplex
carlsbadense 2-9-1]
gi|445669741|gb|ELZ22349.1| transcription factor TFIIB cyclin-related protein [Halosimplex
carlsbadense 2-9-1]
Length = 329
Score = 144 bits (362), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 88/286 (30%), Positives = 152/286 (53%), Gaps = 11/286 (3%)
Query: 17 IEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLSTM 76
I D + G+ +C ECG+V+ + V+D G EWR+F + + SRVG P +L+ LS++
Sbjct: 44 ITDEKRGETVCQECGVVLEEDVVDRGPEWRSF-DARDKAQKSRVGSPTTEMLHDKGLSSV 102
Query: 77 IGPGRGDASFDGFGMSKYQNR----------RTMNSSDRALLNAIREINSMADRINLTKT 126
I DA+ K + R+ ++ DR L A+ EI+ MA + + K
Sbjct: 103 IDWQNKDANGQTLSAKKREQMSRLRTWDERFRSQSAQDRNLKQALGEIDRMASALGIPKD 162
Query: 127 IVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGR 186
+ A+ ++++ D + + GRS +A+A+ LY RQ GVPRT E+ VS++ +KE R
Sbjct: 163 ARETASVIYRRALDEELIPGRSIEAMATGSLYAGARQAGVPRTLDELETVSRVDRKEFAR 222
Query: 187 CFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISV 246
++ I + LE +++ ++ R S+L LP ++ A + + G++P+ +
Sbjct: 223 AYRYIARELELAMEPTDPAQYVPRLVSDLDLPEETKQRAVELLEAGKREAVHSGKNPVGL 282
Query: 247 AAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKL 292
AAAAIY A + ++ +Q E+ D A V+ VTIR Y + A ++
Sbjct: 283 AAAAIYAAGRLTNVDVTQHEVADAADVSAVTIRDRYTELLDAADRV 328
>gi|448457245|ref|ZP_21595740.1| transcription factor TFIIB cyclin-related protein [Halorubrum
lipolyticum DSM 21995]
gi|445810826|gb|EMA60841.1| transcription factor TFIIB cyclin-related protein [Halorubrum
lipolyticum DSM 21995]
Length = 330
Score = 144 bits (362), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 88/265 (33%), Positives = 139/265 (52%), Gaps = 6/265 (2%)
Query: 22 AGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLSTMIGPG- 80
+ +++C++CGLVV ID G EWR+F ++ + +P R G P + LST IG
Sbjct: 62 SAERVCADCGLVVEADRIDHGPEWRSFDDDDA--NPKRTGAPLTRSRHDRGLSTEIGRST 119
Query: 81 --RGDASFDGFGMSKYQNRRTMNSS-DRALLNAIREINSMADRINLTKTIVDRANNLFKQ 137
+G M NR +++ DR + A EI + + L ++ D A LF
Sbjct: 120 RVKGRKRRRLARMRTQHNRAQISTKRDRNKVYAYTEIRRLTGVLELPDSVRDTACTLFDS 179
Query: 138 VHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGRCFKLILKALET 197
D L+GRS + A+AC+Y+ACR V RT +EIC +K + E F + + L
Sbjct: 180 AQDESLLRGRSLEGFAAACVYVACRTADVARTVEEICGEAKATVDEHQAAFDAMNRELGL 239
Query: 198 SVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQA 257
+ +++ RF S+L V++ A +A +AVE I GR+P+ VAAA +Y A++
Sbjct: 240 PIAPTGPAEYLPRFASDLDCDAGVERRAGELAERAVEEGIANGRNPVGVAAACLYTAARE 299
Query: 258 SSDKRSQKEIGDIAGVAEVTIRQSY 282
+ +Q+E D AGV VT+R++Y
Sbjct: 300 LDAECTQQEAADAAGVTPVTVRRTY 324
>gi|448513858|ref|ZP_21616789.1| transcription factor TFIIB cyclin-related protein [Halorubrum
distributum JCM 9100]
gi|448526632|ref|ZP_21619901.1| transcription factor TFIIB cyclin-related protein [Halorubrum
distributum JCM 10118]
gi|445693011|gb|ELZ45174.1| transcription factor TFIIB cyclin-related protein [Halorubrum
distributum JCM 9100]
gi|445698859|gb|ELZ50897.1| transcription factor TFIIB cyclin-related protein [Halorubrum
distributum JCM 10118]
Length = 337
Score = 143 bits (361), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 88/265 (33%), Positives = 140/265 (52%), Gaps = 6/265 (2%)
Query: 22 AGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLSTMIGPG- 80
A +++C++CGLVV ID G EWR+F ++ + +P R G P + LST IG
Sbjct: 69 AAERVCADCGLVVEADRIDHGPEWRSFDDDDA--NPKRTGAPLTRSRHDRGLSTEIGRST 126
Query: 81 --RGDASFDGFGMSKYQNRRTMNSS-DRALLNAIREINSMADRINLTKTIVDRANNLFKQ 137
+G M NR +++ DR + A EI + + L ++ D A LF
Sbjct: 127 KVKGRKRRRLARMRTQHNRAQISTKRDRNKVYAYTEIRRLTGVLELPDSVRDAACALFDS 186
Query: 138 VHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGRCFKLILKALET 197
+ L+GRS + A+AC+Y+ACR V RT E+CA +K ++ E F + + L
Sbjct: 187 AQEESLLRGRSLEGFAAACVYVACRTADVARTVGEVCAEAKATEDEHRAAFDAMNRELGL 246
Query: 198 SVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQA 257
+ +++ RF S+L V++ A +A +AVE I GR+P+ VAAA +Y A++
Sbjct: 247 PIAPSGPAEYLPRFASDLGCDPAVERRAGELAERAVEEGIANGRNPVGVAAACLYTAARE 306
Query: 258 SSDKRSQKEIGDIAGVAEVTIRQSY 282
+ +Q+E D+A V VT+RQ+Y
Sbjct: 307 LDAECTQQEAADVADVTPVTVRQTY 331
>gi|448393759|ref|ZP_21567818.1| Transcription factor TFIIB cyclin-related protein [Haloterrigena
salina JCM 13891]
gi|445663362|gb|ELZ16114.1| Transcription factor TFIIB cyclin-related protein [Haloterrigena
salina JCM 13891]
Length = 318
Score = 143 bits (361), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 88/278 (31%), Positives = 149/278 (53%), Gaps = 11/278 (3%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLST 75
++ D G+++C ECGLV+ + ID G EWR F N + + SRVG P ++ L+T
Sbjct: 29 IVHDPDRGERVCEECGLVLTEDPIDYGPEWRAF-NAQEHDELSRVGAPLTQSMHDRGLTT 87
Query: 76 MIGPGRGDASFDGFGMSK---------YQNR-RTMNSSDRALLNAIREINSMADRINLTK 125
I DA+ K +Q R RT N+ +R L A+ EI+ M + + K
Sbjct: 88 TIDWRNKDANGHSMSADKQGQLHRLRVWQERIRTKNAGERNLKYALSEIDRMVSALGVPK 147
Query: 126 TIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIG 185
+ + A+ ++++ + ++GRS + +A++ LY ACR+E +PR+ +E+ +VS++ ++EIG
Sbjct: 148 PVKETASVIYRRALEQDLIRGRSIEGVATSALYTACRKEDIPRSLEEVTSVSRVDQREIG 207
Query: 186 RCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPIS 245
R ++ I L+ +++ F+ RFCS L + V+ A I + E + G+SP
Sbjct: 208 RTYRYIADELDINLEPTNPRQFVPRFCSELDVGKDVETKAVEIIDQTTEQGLHSGKSPTG 267
Query: 246 VAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
AAAAIY A + Q+ + D A VT+R Y+
Sbjct: 268 FAAAAIYAAGLLCDETIPQRAVADTAQTTVVTVRNRYR 305
>gi|448345333|ref|ZP_21534230.1| Transcription factor TFIIB cyclin-related protein [Natrinema
altunense JCM 12890]
gi|445635331|gb|ELY88501.1| Transcription factor TFIIB cyclin-related protein [Natrinema
altunense JCM 12890]
Length = 329
Score = 143 bits (361), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 94/280 (33%), Positives = 154/280 (55%), Gaps = 17/280 (6%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTF-SNEKSGVDPSRVGGPENPLLNGSDLS 74
L+ D + +C++CGLVV + ID G EWR F + EK + SRVG P +++ LS
Sbjct: 42 LVADDEHAETVCADCGLVVEEGEIDRGPEWRAFDAAEKD--EKSRVGAPTTNMMHDQGLS 99
Query: 75 TMIGPGRGDASFDGFGMSKYQNR------------RTMNSSDRALLNAIREINSMADRIN 122
T IG DA G +S Q RT NS +R L A+ EI+ MA +
Sbjct: 100 TNIGWQDKDAY--GKSLSSRQREKMQRLRTWNERFRTRNSRERNLKQALGEIDRMASALG 157
Query: 123 LTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKK 182
L + + A+ ++++ + + L GRS + +A++ LY A RQ G PR+ EI AVS++ K
Sbjct: 158 LPDNVRETASVIYRRALEDELLPGRSIEGVATSSLYAAARQAGTPRSLDEISAVSRVDKA 217
Query: 183 EIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRS 242
E+ R ++ +++ L V ++ RF S+L L + + A + A E I G+S
Sbjct: 218 EVARTYRYVVRELGLEVQPADPVSYVPRFASDLDLSDETELRARDLLTTAKEKGIHSGKS 277
Query: 243 PISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSY 282
P+ +AAAA+Y A+ ++++ +Q ++ ++A ++EVTIR Y
Sbjct: 278 PVGLAAAAVYAAALLTNEQVTQNDVSEVASISEVTIRNRY 317
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 56/96 (58%), Gaps = 1/96 (1%)
Query: 208 MSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEI 267
+ R S L LP+ V++ A+ I R+A+E +++PGRS VA +++Y A++ + RS EI
Sbjct: 149 IDRMASALGLPDNVRETASVIYRRALEDELLPGRSIEGVATSSLYAAARQAGTPRSLDEI 208
Query: 268 GDIAGVAEVTIRQSYKLMYPHAS-KLFPQDFVFHTP 302
++ V + + ++Y+ + ++ P D V + P
Sbjct: 209 SAVSRVDKAEVARTYRYVVRELGLEVQPADPVSYVP 244
>gi|315426667|dbj|BAJ48293.1| transcription initiation factor TFIIB [Candidatus Caldiarchaeum
subterraneum]
gi|315428010|dbj|BAJ49599.1| transcription initiation factor TFIIB [Candidatus Caldiarchaeum
subterraneum]
gi|343485421|dbj|BAJ51075.1| transcription initiation factor TFIIB [Candidatus Caldiarchaeum
subterraneum]
Length = 307
Score = 143 bits (361), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 91/290 (31%), Positives = 152/290 (52%), Gaps = 19/290 (6%)
Query: 8 CYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPL 67
C E + L+ D R G+ CS CG V+ ++ +D+G EWR +E+ SRVG P +P+
Sbjct: 12 CPECGNEMLVTDQRTGEITCSVCGFVIQEKDVDMGPEWRNLEDEEGS--RSRVGAPLSPM 69
Query: 68 LNGSDLSTMIGPGRGDASFDGFGMSKYQNRRTM------------NSSD-RALLNAIREI 114
LST+I DAS G +SK + R M NSS+ R L A+ +
Sbjct: 70 YRDHGLSTVIEGVDEDAS--GRKLSK-ETREKMIRLKKLDATSQINSSETRNLQQAVNIL 126
Query: 115 NSMADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEI- 173
D++ L++T+ +RA ++++ ++GRS +I +A Y ACR G PR +E
Sbjct: 127 QIYVDKLRLSQTVAERAMLIYRRALRAGLVRGRSIKSIMAAATYAACRMLGTPRDLREFE 186
Query: 174 CAVSKISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAV 233
+ + +K I + ++L+LK L V + ++++ + + L + A + +AV
Sbjct: 187 RSYPAVKRKTIAQGYRLLLKHLGLKVPVADPSIYVNKIAAKVGLDQRTVQEAIRLLNEAV 246
Query: 234 ELDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
+ G+ P+ +AAAA+YMA Q ++ +QK+I AGV EVT+R +K
Sbjct: 247 KRKATVGKDPVGIAAAALYMACQETTQNLTQKDIAKAAGVTEVTVRNRFK 296
>gi|448580042|ref|ZP_21644871.1| transcription initiation factor TFB [Haloferax larsenii JCM 13917]
gi|448590025|ref|ZP_21650084.1| transcription initiation factor TFB [Haloferax elongans ATCC
BAA-1513]
gi|445722715|gb|ELZ74372.1| transcription initiation factor TFB [Haloferax larsenii JCM 13917]
gi|445735140|gb|ELZ86693.1| transcription initiation factor TFB [Haloferax elongans ATCC
BAA-1513]
Length = 334
Score = 143 bits (361), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 90/277 (32%), Positives = 149/277 (53%), Gaps = 11/277 (3%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLST 75
++ D G+ +C +CGLVV +D G EWR F + + + SRVG P ++ LST
Sbjct: 46 VVTDDEHGETVCDDCGLVVTADSVDRGPEWRAF-DAREKDEKSRVGAPTTNTMHDKGLST 104
Query: 76 MIGPGRGDASFDGFG---------MSKYQNR-RTMNSSDRALLNAIREINSMADRINLTK 125
I DA + G + K+ R RT +S +R L A+ EI+ MA + L +
Sbjct: 105 NIDWRDRDAYGNSLGARQRQKMQRLRKWNERFRTRDSKERNLKQALGEIDRMASALGLPE 164
Query: 126 TIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIG 185
+ + A+ ++++ D L GRS + +A++C Y A R GVPR+ EI VS++ K E+
Sbjct: 165 NVRETASVIYRRALDDDLLPGRSIEGVATSCTYAAARMAGVPRSLDEIAEVSRVEKSEVA 224
Query: 186 RCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPIS 245
R ++ I + L V ++ RF S L L + + A + + A E + G+SP+
Sbjct: 225 RTYRYIARELSLEVKPADPEQYVPRFASELGLSDESKMRARKLLKNAKEKGVHSGKSPVG 284
Query: 246 VAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSY 282
+AAAA+Y A+ +++K +Q + ++A ++EVTIR Y
Sbjct: 285 LAAAAVYAAALLTNEKTTQAAVSEVADISEVTIRNRY 321
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 54/96 (56%), Gaps = 1/96 (1%)
Query: 208 MSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEI 267
+ R S L LP V++ A+ I R+A++ D++PGRS VA + Y A++ + RS EI
Sbjct: 153 IDRMASALGLPENVRETASVIYRRALDDDLLPGRSIEGVATSCTYAAARMAGVPRSLDEI 212
Query: 268 GDIAGVAEVTIRQSYKLMYPHAS-KLFPQDFVFHTP 302
+++ V + + ++Y+ + S ++ P D + P
Sbjct: 213 AEVSRVEKSEVARTYRYIARELSLEVKPADPEQYVP 248
>gi|448476239|ref|ZP_21603403.1| transcription factor TFIIB cyclin-related protein [Halorubrum
aidingense JCM 13560]
gi|445815788|gb|EMA65707.1| transcription factor TFIIB cyclin-related protein [Halorubrum
aidingense JCM 13560]
Length = 334
Score = 143 bits (361), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 86/263 (32%), Positives = 137/263 (52%), Gaps = 6/263 (2%)
Query: 24 DQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLSTMIGPG--- 80
+++C++CGLVV ID G EWR+F+++ + +P R G P + LST IG
Sbjct: 68 ERVCTDCGLVVDADRIDHGPEWRSFADDDT--NPKRTGAPLTRSRHDRGLSTEIGRSTRV 125
Query: 81 RGDASFDGFGMSKYQNR-RTMNSSDRALLNAIREINSMADRINLTKTIVDRANNLFKQVH 139
+G M NR R DR + A EI + + L ++ D A LF
Sbjct: 126 KGRKRRRLARMRTQHNRARISTKRDRNKVYAYTEIRRLTGALGLPNSVRDTACTLFDSAQ 185
Query: 140 DGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGRCFKLILKALETSV 199
D L+GRS + A+AC+Y+ACR V RT E+C +K ++ E F + + L +
Sbjct: 186 DESLLRGRSLEGFAAACVYVACRTAAVARTVSEVCDAAKATEDEHRAAFDAMNRELGLPI 245
Query: 200 DLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASS 259
+++ RF S+L + +++ A +A +AVE I GR+P+ VAAA +Y A++
Sbjct: 246 GPTGPAEYLPRFASDLDVDADIERRAGALADRAVEEGIANGRNPVGVAAACLYTAARELD 305
Query: 260 DKRSQKEIGDIAGVAEVTIRQSY 282
+Q+E D+A V VT+R++Y
Sbjct: 306 ADCTQREAADVADVTPVTVRRTY 328
Score = 37.4 bits (85), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 38/78 (48%)
Query: 208 MSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEI 267
+ R L LPN V+ A + A + ++ GRS AAA +Y+A + ++ R+ E+
Sbjct: 160 IRRLTGALGLPNSVRDTACTLFDSAQDESLLRGRSLEGFAAACVYVACRTAAVARTVSEV 219
Query: 268 GDIAGVAEVTIRQSYKLM 285
D A E R ++ M
Sbjct: 220 CDAAKATEDEHRAAFDAM 237
>gi|76803176|ref|YP_331271.1| transcription initiation factor TFB 7 [Natronomonas pharaonis DSM
2160]
gi|76559041|emb|CAI50639.1| transcription initiation factor TFB [Natronomonas pharaonis DSM
2160]
Length = 287
Score = 143 bits (360), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 83/263 (31%), Positives = 139/263 (52%), Gaps = 6/263 (2%)
Query: 24 DQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLSTMIGPG--- 80
+ +C ECGLVV + +D G EWR+FS++++ +P R G P + LST IG
Sbjct: 22 ETVCDECGLVVAEDELDRGPEWRSFSDDET--NPERCGAPLTRSRHDRGLSTEIGRSTRL 79
Query: 81 RGDASFDGFGMSKYQNRRTMNSS-DRALLNAIREINSMADRINLTKTIVDRANNLFKQVH 139
+G M + NR ++S +R ++ E+ + ++ L + + +RA LF+
Sbjct: 80 KGRKRRRVARMRRQHNRAQVSSKRERNQMHGFIEVRRLIGQLGLPEALQERACVLFESAQ 139
Query: 140 DGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGRCFKLILKALETSV 199
+ L+GR + A+A +Y+ CR V RT EI A + ++ E+ + + + L
Sbjct: 140 NEDLLQGRCIEGFAAAAVYVVCRTASVSRTLDEIVAAASATRDELTVAYDALNRELGIPT 199
Query: 200 DLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASS 259
I ++++RF S L LP+ V++ A +A A E + GR P VAAA +Y A++
Sbjct: 200 GPIAPTEYLARFASKLGLPSAVERTARELATDAEESGLAVGRDPSGVAAACLYTAAEEHD 259
Query: 260 DKRSQKEIGDIAGVAEVTIRQSY 282
+Q E GD+AGV+ VT+R +Y
Sbjct: 260 HDVTQAEAGDVAGVSAVTVRSTY 282
>gi|448560614|ref|ZP_21634062.1| transcription initiation factor TFB [Haloferax prahovense DSM
18310]
gi|448582685|ref|ZP_21646189.1| transcription initiation factor TFB [Haloferax gibbonsii ATCC
33959]
gi|445722264|gb|ELZ73927.1| transcription initiation factor TFB [Haloferax prahovense DSM
18310]
gi|445732333|gb|ELZ83916.1| transcription initiation factor TFB [Haloferax gibbonsii ATCC
33959]
Length = 288
Score = 143 bits (360), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 88/269 (32%), Positives = 143/269 (53%), Gaps = 10/269 (3%)
Query: 20 YRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLSTMIG- 78
+ AG+ +C++CGLVV + ID G EWR+F+++ +P+R G P + LST IG
Sbjct: 19 FEAGETVCTDCGLVVSEYRIDHGPEWRSFADDDR--NPARTGAPLTRSRHDRGLSTEIGR 76
Query: 79 ----PGRGDASFDGFGMSKYQNR-RTMNSSDRALLNAIREINSMADRINLTKTIVDRANN 133
GR F M + NR R +R + A EI + ++L I D+A +
Sbjct: 77 STRIKGRKRRQF--ARMRRQHNRARISTKRERNQVYAFTEIRRVTSALSLPNHIRDQACS 134
Query: 134 LFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGRCFKLILK 193
LF+ + L+GRS + A+AC+Y ACR GV R+ +E+C VSK ++ E + + +
Sbjct: 135 LFESAQNEDLLRGRSLEGFAAACVYAACRVAGVSRSVEEVCDVSKATEAEHQAAYGALNR 194
Query: 194 ALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYM 253
L V +++ RF + L L + ++ A +A E +V G++P VAAA +Y
Sbjct: 195 DLGLPVAPADPTEYLPRFATKLDLDSDTERRAREYVAEAREEGVVGGKNPCGVAAACLYT 254
Query: 254 ASQASSDKRSQKEIGDIAGVAEVTIRQSY 282
A++ + +Q E D+A V VT+R++Y
Sbjct: 255 AARDRGEDCTQAEAADVADVTPVTLRKTY 283
>gi|119719600|ref|YP_920095.1| transcription initiation factor IIB [Thermofilum pendens Hrk 5]
gi|119524720|gb|ABL78092.1| Transcription initiation factor IIB (TFIIB) [Thermofilum pendens
Hrk 5]
Length = 327
Score = 143 bits (360), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 96/278 (34%), Positives = 150/278 (53%), Gaps = 12/278 (4%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLST 75
LI D G+ IC+ CG V+ +R ID G+EWR F+ E+ SRVG P + L T
Sbjct: 37 LIYDATRGEIICANCGYVMSEREIDQGAEWRAFTPEERE-KRSRVGAPISRY-GVESLVT 94
Query: 76 MIGPGRGDAS---------FDGFGMSKYQNR-RTMNSSDRALLNAIREINSMADRINLTK 125
I G DA+ + + K+Q R R +S +R L A+ E+ + ++ L K
Sbjct: 95 DIDWGGRDAAGREISLRKRIEMLRLRKWQVRARAQSSMERNLAQAVIELERLGAQLGLPK 154
Query: 126 TIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIG 185
++DRA +++K D ++GRS +++ +A +Y ACR+ +PRT EI ++ +K++
Sbjct: 155 AVLDRALDIYKSALDSNLVRGRSIESVMAAAVYAACREMRLPRTLDEIALYTRAGRKDVA 214
Query: 186 RCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPIS 245
RC++L+L+ V L DF+ R S L L K A I +A + G+ P
Sbjct: 215 RCYRLLLREASLKVPLPNAADFVPRIGSLLRLSGATIKRAMEIIDQARNAGLTAGKDPAG 274
Query: 246 VAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
+AAAAIY+A+ + + R+QKE+ A V EVT+R YK
Sbjct: 275 LAAAAIYIAALQNGEMRTQKEVARAAKVTEVTVRNRYK 312
Score = 41.6 bits (96), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 44/95 (46%), Gaps = 4/95 (4%)
Query: 208 MSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEI 267
+ R + L LP V A I + A++ ++V GRS SV AAA+Y A + R+ EI
Sbjct: 143 LERLGAQLGLPKAVLDRALDIYKSALDSNLVRGRSIESVMAAAVYAACREMRLPRTLDEI 202
Query: 268 GDIAGVAEVTIRQSYKLMYPHASKLFP----QDFV 298
+ + Y+L+ AS P DFV
Sbjct: 203 ALYTRAGRKDVARCYRLLLREASLKVPLPNAADFV 237
>gi|448356139|ref|ZP_21544886.1| transcription factor TFIIB cyclin-like protein [Natrialba
hulunbeirensis JCM 10989]
gi|445633353|gb|ELY86541.1| transcription factor TFIIB cyclin-like protein [Natrialba
hulunbeirensis JCM 10989]
Length = 364
Score = 143 bits (360), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 94/281 (33%), Positives = 152/281 (54%), Gaps = 13/281 (4%)
Query: 13 DAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTF-SNEKSGVDPSRVGGPENPLLNGS 71
D L+ D + +C++CGLVV + ID G EWR F + EK + SRVG P +++
Sbjct: 74 DGRLMSDAEHAETVCADCGLVVQEGEIDRGPEWRAFDAAEKD--EKSRVGAPTTNMMHDQ 131
Query: 72 DLSTMIGPGRGDA---SFDGFGMSKYQNRRTMN-------SSDRALLNAIREINSMADRI 121
LST IG DA S K Q RT N S +R L A+ EI+ MA +
Sbjct: 132 GLSTNIGWQDKDAYGRSLSSRQRQKMQRLRTWNERFRTRDSKERNLKQALGEIDRMASAL 191
Query: 122 NLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISK 181
L + + A+ ++++ + L GRS + +++A LY + RQ G PR+ EI VS++ K
Sbjct: 192 GLPDNVRETASVIYRRALEEDLLPGRSIEGVSTASLYASARQAGTPRSLDEIEGVSRVEK 251
Query: 182 KEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGR 241
EI R ++ +++ L V ++ RF S+L L + ++ A + A E I G+
Sbjct: 252 DEIARTYRYVIRELGLEVKPADPVSYVPRFASDLDLSDETERRARQLLETAKESGIHSGK 311
Query: 242 SPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSY 282
SP+ +AAAA+Y + +++K +Q ++ ++A ++EVTIR Y
Sbjct: 312 SPVGLAAAAVYAGALLTNEKVTQNDVSEVASISEVTIRNRY 352
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 56/96 (58%), Gaps = 1/96 (1%)
Query: 208 MSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEI 267
+ R S L LP+ V++ A+ I R+A+E D++PGRS V+ A++Y +++ + RS EI
Sbjct: 184 IDRMASALGLPDNVRETASVIYRRALEEDLLPGRSIEGVSTASLYASARQAGTPRSLDEI 243
Query: 268 GDIAGVAEVTIRQSYKLMYPHAS-KLFPQDFVFHTP 302
++ V + I ++Y+ + ++ P D V + P
Sbjct: 244 EGVSRVEKDEIARTYRYVIRELGLEVKPADPVSYVP 279
>gi|448300614|ref|ZP_21490613.1| transcription factor TFIIB cyclin-related protein [Natronorubrum
tibetense GA33]
gi|445585433|gb|ELY39728.1| transcription factor TFIIB cyclin-related protein [Natronorubrum
tibetense GA33]
Length = 323
Score = 142 bits (359), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 93/292 (31%), Positives = 157/292 (53%), Gaps = 17/292 (5%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTF-SNEKSGVDPSRVGGPENPLLNGSDLS 74
++ D + +C +CGLVV + ID G EWR F + EK SRVG P +++ LS
Sbjct: 35 VLSDAEHAETVCEDCGLVVEEDEIDRGPEWRAFDAAEKD--KKSRVGAPTTNMMHDQGLS 92
Query: 75 TMIGPGRGDASFDGFGMSKYQNR------------RTMNSSDRALLNAIREINSMADRIN 122
T IG DA G +S Q + RT +S +R L A+ EI+ MA +
Sbjct: 93 TNIGWQDKDAY--GRALSSRQRQKMQRLRTWNERFRTRDSKERNLKQALGEIDRMASALG 150
Query: 123 LTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKK 182
L + + + A+ ++++ + L GRS + +A+A LY + RQ PR+ EI AVS++ K
Sbjct: 151 LPENVRETASVIYRRALEEDLLPGRSIEGVATASLYASARQASTPRSLDEISAVSRVEKM 210
Query: 183 EIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRS 242
E+ R ++ I++ L V ++ RF S+L L + ++ A + A + + G+S
Sbjct: 211 ELTRTYRYIIRELGLEVKPADPEQYVPRFVSDLDLSDETERMARELLESARQEGVHSGKS 270
Query: 243 PISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKLFP 294
P+ +AAAA+Y A+ +++K +Q ++ ++A ++EVTIR YK + + P
Sbjct: 271 PVGLAAAAVYAAALLTNEKVTQNDVSEVASISEVTIRNRYKELLEASDTAAP 322
>gi|409731108|ref|ZP_11272645.1| Transcription factor TFIIB cyclin-related protein [Halococcus
hamelinensis 100A6]
gi|448722791|ref|ZP_21705320.1| Transcription factor TFIIB cyclin-related protein [Halococcus
hamelinensis 100A6]
gi|445788613|gb|EMA39320.1| Transcription factor TFIIB cyclin-related protein [Halococcus
hamelinensis 100A6]
Length = 336
Score = 142 bits (359), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 96/301 (31%), Positives = 154/301 (51%), Gaps = 23/301 (7%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFS----NEKSGVDPSRVGGPENPLLNGS 71
L+ D G+ +C+ECGLVV + ID G EWR F NEK R G P +++
Sbjct: 41 LVSDTEHGETVCNECGLVVDENEIDHGPEWRAFDAAERNEKK-----RTGAPTTKMMHDK 95
Query: 72 DLSTMIGPGRGDASFDGFGMSKYQNR----------RTMNSSDRALLNAIREINSMADRI 121
LS+ IG DA + K Q RT NS +R L A+ EI+ MA +
Sbjct: 96 GLSSQIGWQNKDAYGNALSSRKRQQMQRLRTWDERFRTRNSKERNLKQALGEIDRMASAL 155
Query: 122 NLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISK 181
+ K + + A+ ++++ L GRS + +++A LY RQ G+PR+ +E+ AVS++ +
Sbjct: 156 GVPKDVRETASVIYRRALAENLLPGRSIEGMSTAALYAGIRQMGLPRSVEEVGAVSRVDE 215
Query: 182 KEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGR 241
E R ++ I + L+ + ++SRF S+L + ++ A + A E I G+
Sbjct: 216 MEFKRAYRYINQELDLQIAPPKPQQYLSRFASDLDVSEETERRARELLTTAEEQAIHSGK 275
Query: 242 SPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKLFPQDFVFHT 301
SP+ +A AA+Y A ++ K +Q E+ ++A V+ VTIR Y + A + Q HT
Sbjct: 276 SPVGLAGAALYAAGILTNRKLTQDEVSEVAEVSNVTIRNRYHELMDVAGETDTQ----HT 331
Query: 302 P 302
P
Sbjct: 332 P 332
>gi|345004538|ref|YP_004807391.1| transcription initiation factor IIB [halophilic archaeon DL31]
gi|344320164|gb|AEN05018.1| Transcription initiation factor IIB [halophilic archaeon DL31]
Length = 330
Score = 142 bits (359), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 98/291 (33%), Positives = 162/291 (55%), Gaps = 14/291 (4%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTF-SNEKSGVDPSRVGGPENPLLNGSDLS 74
L D G+ +C +CGLVV + ID G EWR F S EK + SRVG P +++ LS
Sbjct: 42 LATDTEHGETVCQDCGLVVDEDSIDRGPEWRAFDSREKD--EKSRVGAPTTNMMHDKGLS 99
Query: 75 TMIGPGRGDASFDGFGMSKYQNR----------RTMNSSDRALLNAIREINSMADRINLT 124
T IG DA + S+ Q RT +S +R L A+ EI+ MA + L
Sbjct: 100 TNIGWQDKDAYGNQLSASQRQKMQRLRTWNERFRTRDSKERNLKQALGEIDRMASALGLP 159
Query: 125 KTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEI 184
+++ + A+ ++++ L GRS + +++A LY A R+ G PR+ EI AVS++ K EI
Sbjct: 160 ESVRETASVIYRRALGEDLLPGRSIEGVSTAALYAAARKAGTPRSLDEISAVSRVEKDEI 219
Query: 185 GRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPI 244
R ++ +++ L+ + ++ RF S+L L + ++ A + + A E ++ G+SP+
Sbjct: 220 ARTYRYVVRELKLEIQPADPEQYVPRFASDLGLSDEAERRARQLLQTAKEQEVHSGKSPV 279
Query: 245 SVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSY-KLMYPHASKLFP 294
+AAAA+Y AS +++K +Q E+ ++A ++EVTIR Y +L+ S P
Sbjct: 280 GLAAAAVYAASLLTNEKVTQSEVSEVANISEVTIRNRYHELLEAEESIHMP 330
>gi|313127155|ref|YP_004037425.1| transcription initiation factor iib (tfiib) [Halogeometricum
borinquense DSM 11551]
gi|448288376|ref|ZP_21479575.1| transcription initiation factor iib (tfiib) [Halogeometricum
borinquense DSM 11551]
gi|312293520|gb|ADQ67980.1| Transcription initiation factor IIB (TFIIB) [Halogeometricum
borinquense DSM 11551]
gi|445569527|gb|ELY24099.1| transcription initiation factor iib (tfiib) [Halogeometricum
borinquense DSM 11551]
Length = 321
Score = 142 bits (358), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 92/278 (33%), Positives = 151/278 (54%), Gaps = 13/278 (4%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTF-SNEKSGVDPSRVGGPENPLLNGSDLS 74
++ D G+ +C++CGLVV + +D G EWR F + EK SRVG P ++ LS
Sbjct: 33 VVVDDEHGETVCADCGLVVTEDSVDRGPEWRAFDAAEKD--QKSRVGAPTTNTMHDKGLS 90
Query: 75 TMIGPGRGDASFDGFG---------MSKYQNR-RTMNSSDRALLNAIREINSMADRINLT 124
T I DA + + K+ R RT +S +R L A+ EI+ MA + L
Sbjct: 91 TNIDWRDRDAYGNSLSSNQRQKMQRLRKWNERFRTRDSKERNLKQALGEIDRMASALGLP 150
Query: 125 KTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEI 184
+ + + A+ ++++ D L GRS + +A++C+Y A R GVPR+ EI VS++ K E+
Sbjct: 151 ENVRETASVIYRRALDDDLLPGRSIEGVATSCVYAAARMAGVPRSLDEISEVSRVEKSEV 210
Query: 185 GRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPI 244
R ++ I + L V ++ RF S L L + + A + + A E + G+SP+
Sbjct: 211 ARTYRYIARELSLEVKPADPEQYVPRFGSELGLSDESKMRARQLLKNAKEKGVHSGKSPV 270
Query: 245 SVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSY 282
+AAAA+Y A+ +++K +Q + D+A ++EVTIR Y
Sbjct: 271 GLAAAAVYAAALLTNEKTTQAAVSDVADISEVTIRNRY 308
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 55/96 (57%), Gaps = 1/96 (1%)
Query: 208 MSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEI 267
+ R S L LP V++ A+ I R+A++ D++PGRS VA + +Y A++ + RS EI
Sbjct: 140 IDRMASALGLPENVRETASVIYRRALDDDLLPGRSIEGVATSCVYAAARMAGVPRSLDEI 199
Query: 268 GDIAGVAEVTIRQSYKLMYPHAS-KLFPQDFVFHTP 302
+++ V + + ++Y+ + S ++ P D + P
Sbjct: 200 SEVSRVEKSEVARTYRYIARELSLEVKPADPEQYVP 235
>gi|448628519|ref|ZP_21672288.1| transcription initiation factor IIB [Haloarcula vallismortis ATCC
29715]
gi|445758050|gb|EMA09375.1| transcription initiation factor IIB [Haloarcula vallismortis ATCC
29715]
Length = 286
Score = 142 bits (358), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 90/265 (33%), Positives = 138/265 (52%), Gaps = 10/265 (3%)
Query: 24 DQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLSTMIG----- 78
+ +CS CGLVVG+ ID G EWR+FS++ + D +R G P + LST IG
Sbjct: 21 ESVCSGCGLVVGEDAIDPGPEWRSFSDDDT--DRARTGAPLTRSRHDRGLSTKIGRSTRL 78
Query: 79 PGRGDASFDGFGMSKYQNRRTMNSS-DRALLNAIREINSMADRINLTKTIVDRANNLFKQ 137
GR F + + NR ++S +R + A EI + + L+ I DRA LF+
Sbjct: 79 KGRKRRQF--ARLRREHNRAQISSKRERNKVYAFTEIRRIISSMALSDAIRDRACVLFES 136
Query: 138 VHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGRCFKLILKALET 197
+ LKGR+ + A+A +Y CR EGV RT E+C V+K ++ E+ + + + L
Sbjct: 137 AQNEDLLKGRTLEGFAAAAIYATCRTEGVARTVDELCTVAKATQAELRAAYDALNRELGL 196
Query: 198 SVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQA 257
I +++ RF + L LP V++ A + A + +V GR+P VAAA +Y A+Q
Sbjct: 197 PTGPIDPREYVPRFATALELPTAVRQRAERLVDVAQDRGLVSGRNPAGVAAACLYTAAQE 256
Query: 258 SSDKRSQKEIGDIAGVAEVTIRQSY 282
+Q E + A V VT+R +Y
Sbjct: 257 QGVALTQAEAAETADVTPVTLRGTY 281
>gi|284176274|ref|YP_003406551.1| Transcription factor TFIIB cyclin-related protein [Haloterrigena
turkmenica DSM 5511]
gi|284017931|gb|ADB63878.1| Transcription factor TFIIB cyclin-related protein [Haloterrigena
turkmenica DSM 5511]
Length = 318
Score = 142 bits (358), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 87/278 (31%), Positives = 149/278 (53%), Gaps = 11/278 (3%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLST 75
++ D G+++C ECGLV+ + ID G EWR F N + + SRVG P ++ L+T
Sbjct: 29 IVHDPDRGERVCEECGLVLTEDPIDYGPEWRAF-NAQEHDELSRVGAPLTQSMHDRGLTT 87
Query: 76 MIGPGRGDASFDGFGMSK---------YQNR-RTMNSSDRALLNAIREINSMADRINLTK 125
I DA+ K +Q R RT N+ +R L A+ EI+ M + + K
Sbjct: 88 TIDWRNKDANGHSMSADKQGQLHRLRVWQERIRTKNAGERNLKYALSEIDRMVSALGVPK 147
Query: 126 TIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIG 185
+ + A+ ++++ + ++GRS + +A++ LY ACR+E +PR+ +E+ +VS++ ++EIG
Sbjct: 148 PVKETASVIYRRALEQDLIRGRSIEGVATSALYTACRKEDIPRSLEEVTSVSRVDQREIG 207
Query: 186 RCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPIS 245
R ++ I L+ +++ F+ RFCS L + V+ A I + + + G+SP
Sbjct: 208 RTYRYIADELDINLEPTNPRQFVPRFCSELDVGKDVETKAVEIIDRTTDQGLHSGKSPTG 267
Query: 246 VAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
AAAAIY A + Q+ + D A VT+R Y+
Sbjct: 268 FAAAAIYAAGLLCDETIPQRAVADTAQTTVVTVRNRYR 305
>gi|322371186|ref|ZP_08045738.1| Transcription factor TFIIB cyclin-related protein [Haladaptatus
paucihalophilus DX253]
gi|320549176|gb|EFW90838.1| Transcription factor TFIIB cyclin-related protein [Haladaptatus
paucihalophilus DX253]
Length = 357
Score = 142 bits (358), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 97/280 (34%), Positives = 150/280 (53%), Gaps = 17/280 (6%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTF-SNEKSGVDPSRVGGPENPLLNGSDLS 74
L+ D + +CS+CGLVV ID G EWR F ++E+ SRVG P +++ LS
Sbjct: 58 LVTDSEHAETVCSQCGLVVEADGIDHGPEWRAFDASERDS--KSRVGMPTTKMMHDKGLS 115
Query: 75 TMIGPGRGDASFDGFGMSKYQNR------------RTMNSSDRALLNAIREINSMADRIN 122
+ IG DA G +S Q + RT +S +R L A+ EI+ MA +
Sbjct: 116 SNIGWQDKDAY--GRSLSSRQRQKMQRLRTWDERFRTRDSKERNLKQALGEIDRMASALG 173
Query: 123 LTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKK 182
L K + + A+ ++++ + L GRS + +A+A LY A RQ GVPRT E+ VS+I
Sbjct: 174 LPKNVRETASVIYRRALNEDLLPGRSIEGVATASLYAAARQSGVPRTMDEVTTVSRIDGM 233
Query: 183 EIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRS 242
E R ++ I++ L V ++SRF S L L + ++ A + + A I G+S
Sbjct: 234 EFKRTYRYIVRELGLGVKPADPEQYLSRFESELDLTHETKRRAHDLLKTAKGTGITSGKS 293
Query: 243 PISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSY 282
P+ +AAAA+Y A+ +K +Q E+ D++ V+ VTIR Y
Sbjct: 294 PVGLAAAALYAAALLEDEKLTQDEVSDVSDVSTVTIRNRY 333
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 47/78 (60%)
Query: 208 MSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEI 267
+ R S L LP V++ A+ I R+A+ D++PGRS VA A++Y A++ S R+ E+
Sbjct: 165 IDRMASALGLPKNVRETASVIYRRALNEDLLPGRSIEGVATASLYAAARQSGVPRTMDEV 224
Query: 268 GDIAGVAEVTIRQSYKLM 285
++ + + +++Y+ +
Sbjct: 225 TTVSRIDGMEFKRTYRYI 242
>gi|448419798|ref|ZP_21580642.1| transcription initiation factor iib (tfiib) [Halosarcina pallida
JCM 14848]
gi|445674712|gb|ELZ27249.1| transcription initiation factor iib (tfiib) [Halosarcina pallida
JCM 14848]
Length = 352
Score = 142 bits (358), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 88/277 (31%), Positives = 150/277 (54%), Gaps = 11/277 (3%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLST 75
++ D G+ +C +CGLV+ + +D G EWR F +++ SRVG P ++ LST
Sbjct: 64 VVVDDEHGETVCDDCGLVITEDSVDRGPEWRAFDSQEKD-QKSRVGAPTTNTMHDKGLST 122
Query: 76 MIGPGRGDASFDGFG---------MSKYQNR-RTMNSSDRALLNAIREINSMADRINLTK 125
I DA + + K+ R RT +S +R L A+ EI+ MA + L +
Sbjct: 123 NIDWRDRDAYGNSLSSNQRQKMQRLRKWNERFRTRDSKERNLKQALGEIDRMASALGLPE 182
Query: 126 TIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIG 185
+ + A+ ++++ D L GRS + +A++C+Y A R GVPR+ EI VS++ K E+
Sbjct: 183 NVRETASVIYRRALDDDLLPGRSIEGVATSCVYAAARMAGVPRSLDEISEVSRVEKSEVA 242
Query: 186 RCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPIS 245
R ++ I + L V ++ RF S L L + + A + + A E + G+SP+
Sbjct: 243 RTYRYIARELSLEVKPADPEQYVPRFGSELGLSDEAKMRARQLLKNAKEKGVHSGKSPVG 302
Query: 246 VAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSY 282
+AAAA+Y A+ +++K +Q + ++A ++EVTIR Y
Sbjct: 303 LAAAAVYAAALLTNEKTTQAAVSEVADISEVTIRNRY 339
Score = 50.4 bits (119), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 55/96 (57%), Gaps = 1/96 (1%)
Query: 208 MSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEI 267
+ R S L LP V++ A+ I R+A++ D++PGRS VA + +Y A++ + RS EI
Sbjct: 171 IDRMASALGLPENVRETASVIYRRALDDDLLPGRSIEGVATSCVYAAARMAGVPRSLDEI 230
Query: 268 GDIAGVAEVTIRQSYKLMYPHAS-KLFPQDFVFHTP 302
+++ V + + ++Y+ + S ++ P D + P
Sbjct: 231 SEVSRVEKSEVARTYRYIARELSLEVKPADPEQYVP 266
>gi|448451292|ref|ZP_21592775.1| transcription factor TFIIB cyclin-related protein [Halorubrum
litoreum JCM 13561]
gi|445810726|gb|EMA60742.1| transcription factor TFIIB cyclin-related protein [Halorubrum
litoreum JCM 13561]
Length = 343
Score = 142 bits (357), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 87/265 (32%), Positives = 140/265 (52%), Gaps = 6/265 (2%)
Query: 22 AGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLSTMIGPG- 80
A +++C++CGLVV ID G EWR+F ++ + +P R G P + LST IG
Sbjct: 75 AAERVCADCGLVVEADRIDHGPEWRSFDDDDA--NPKRTGAPLTRSRHDRGLSTEIGRST 132
Query: 81 --RGDASFDGFGMSKYQNRRTMNSS-DRALLNAIREINSMADRINLTKTIVDRANNLFKQ 137
+G M NR +++ DR + A EI + + L ++ D A LF
Sbjct: 133 KVKGRKRRRLARMRTQHNRAQISTKRDRNKVYAYTEIRRLTGVLELPDSVRDAACALFDS 192
Query: 138 VHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGRCFKLILKALET 197
+ L+GRS + A+AC+Y+ACR V RT E+CA +K ++ E F + + L
Sbjct: 193 AQEESLLRGRSLEGFAAACVYVACRTADVARTVGEVCAEAKATEDEHRAAFDAMNRELGL 252
Query: 198 SVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQA 257
+ +++ RF S+L V++ A +A +AVE I GR+P+ VAAA +Y A++
Sbjct: 253 PIAPSGPAEYLPRFASDLGCDPAVERRAGELAERAVEEGIANGRNPVGVAAACLYTAARE 312
Query: 258 SSDKRSQKEIGDIAGVAEVTIRQSY 282
+ +Q+E D+A V VT+R++Y
Sbjct: 313 LDAECTQQEAADVADVTPVTVRRTY 337
>gi|448476740|ref|ZP_21603675.1| transcription factor TFIIB cyclin-related protein [Halorubrum
aidingense JCM 13560]
gi|445815191|gb|EMA65123.1| transcription factor TFIIB cyclin-related protein [Halorubrum
aidingense JCM 13560]
Length = 307
Score = 142 bits (357), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 96/275 (34%), Positives = 145/275 (52%), Gaps = 30/275 (10%)
Query: 23 GDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLSTMIGPGRG 82
G+ I E GL+V + ID G EWR F N SRVG P ++ L+T I
Sbjct: 39 GELIHEETGLIVEEEQIDPGPEWRAF-NHSERQSKSRVGAPTTKTMHDKGLTTTIDWKDK 97
Query: 83 DASFDGFGMS-------------KYQNR-RTMNSSDRALLNAIREINSMADRINLTKTIV 128
DA +G S K+Q R RT ++ +R L A+ EI+ MA
Sbjct: 98 DA----YGRSISAKKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDRMAS--------- 144
Query: 129 DRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGRCF 188
A ++++ + ++GRS + +++A LY ACR+EG+PR+ +EI VS++ +KEIGR +
Sbjct: 145 --ALVIYRRALNEDLIRGRSIEGVSTAALYAACRKEGIPRSLEEISDVSRVERKEIGRTY 202
Query: 189 KLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAA 248
+ I + L + + ++ RF S L L VQ A I E ++ G+SP AA
Sbjct: 203 RYISQELGLEMRPVDPKKYVPRFSSELDLSEEVQSKANEIIETTAEQGLLSGKSPTGFAA 262
Query: 249 AAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
AAIY AS ++K++Q+E+ D+A V EVTIR Y+
Sbjct: 263 AAIYAASLLCNEKKTQREVADVAQVTEVTIRNRYQ 297
>gi|448532924|ref|ZP_21621344.1| transcription factor TFIIB cyclin-related protein [Halorubrum
hochstenium ATCC 700873]
gi|445706158|gb|ELZ58043.1| transcription factor TFIIB cyclin-related protein [Halorubrum
hochstenium ATCC 700873]
Length = 339
Score = 142 bits (357), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 86/263 (32%), Positives = 139/263 (52%), Gaps = 6/263 (2%)
Query: 24 DQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLSTMIGPG--- 80
+++C +CGLVV ID G EWR+F ++ + +P R G P + LST IG
Sbjct: 73 ERVCGDCGLVVEADRIDHGPEWRSFDDDDT--NPKRTGAPLTRSRHDRGLSTEIGRSTKV 130
Query: 81 RGDASFDGFGMSKYQNRRTMNSS-DRALLNAIREINSMADRINLTKTIVDRANNLFKQVH 139
+G M NR +++ DR + A EI + + L ++ D A +LF
Sbjct: 131 KGRKRRRLARMRTQHNRAQISTKRDRNKVYAYTEIRRLTGVLELPDSVRDTACSLFDSAQ 190
Query: 140 DGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGRCFKLILKALETSV 199
+ L+GRS + A+AC+Y+ACR V RT E+C +K ++ E F + + L +
Sbjct: 191 EESLLRGRSLEGFAAACVYVACRTADVARTVGEVCDEAKATEDEHQAAFDAMNRELGLPI 250
Query: 200 DLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASS 259
+++ RF S+L V++ A +A +AVE I GR+P+ VAAA +Y A++
Sbjct: 251 APAGPSEYLPRFASDLGCDPAVERRAGELADRAVEEGIANGRNPVGVAAACLYTAARELD 310
Query: 260 DKRSQKEIGDIAGVAEVTIRQSY 282
+ +Q+E D+AGV VT+R++Y
Sbjct: 311 AEYTQQEAADVAGVTPVTVRRTY 333
>gi|448503020|ref|ZP_21612884.1| transcription factor TFIIB cyclin-related protein [Halorubrum
coriense DSM 10284]
gi|445693422|gb|ELZ45574.1| transcription factor TFIIB cyclin-related protein [Halorubrum
coriense DSM 10284]
Length = 335
Score = 142 bits (357), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 96/283 (33%), Positives = 148/283 (52%), Gaps = 11/283 (3%)
Query: 13 DAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSD 72
D L D G+ +C +CGLVV + +D G EWR F N SRVG P +++
Sbjct: 45 DGRLATDTEHGETVCEDCGLVVEEDSVDRGPEWRAF-NSGERDSKSRVGAPTTNMMHDKG 103
Query: 73 LSTMIGPGRGDA---SFDGFGMSK------YQNR-RTMNSSDRALLNAIREINSMADRIN 122
LST IG DA S G + + R RT +S +R L A+ EI+ MA +
Sbjct: 104 LSTNIGWQDKDAYGKSLSGRQRRRMQRLRTWNERFRTRDSKERNLKQALGEIDRMASALG 163
Query: 123 LTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKK 182
L + + A+ ++++ L GRS + +A+A LY A RQ G PR+ E AVS++ K
Sbjct: 164 LPDNVRETASVIYRRALSENLLPGRSIEGVATASLYAAARQVGNPRSLDEFTAVSRVEKM 223
Query: 183 EIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRS 242
E+ R ++ +++ L V ++ RF S L L ++ A + A I G+S
Sbjct: 224 ELTRTYRYVIRELGLRVQPADPTSYVPRFASRLDLSEETERRARELLDDAASEGITSGKS 283
Query: 243 PISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLM 285
P+ +AAAA+Y A+ S++K +Q ++ +A V+EVTIR YK +
Sbjct: 284 PVGLAAAAVYAAALLSNEKVTQSQVSGVADVSEVTIRNRYKEL 326
>gi|385803942|ref|YP_005840342.1| transcription initiation factor TFB [Haloquadratum walsbyi C23]
gi|339729434|emb|CCC40691.1| transcription initiation factor TFB [Haloquadratum walsbyi C23]
Length = 346
Score = 141 bits (356), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 97/280 (34%), Positives = 160/280 (57%), Gaps = 11/280 (3%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLST 75
LI+D G+ +CS+CGLVV + ID G EWR F + + SRVG P L++ LST
Sbjct: 58 LIQDEARGETVCSDCGLVVDENSIDRGPEWRAFDSAERD-QKSRVGAPTTKLMHDKGLST 116
Query: 76 MIGPGRGDASFDGFG---------MSKYQNR-RTMNSSDRALLNAIREINSMADRINLTK 125
IG DA + + + R RT +S +R L A+ EI+ MA + L +
Sbjct: 117 NIGWQDKDAYGNALSARQREQMQRLRTWNERFRTRDSKERNLKQALGEIDRMASALGLPE 176
Query: 126 TIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIG 185
++ + A+ ++++ D L GRS + +A+A LY A RQ G PR+ EI VS++ + E+
Sbjct: 177 SVRETASVIYRRALDEDLLPGRSIEGVATAALYAAARQAGTPRSLDEIERVSRVDRMELT 236
Query: 186 RCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPIS 245
R ++ +++ L+ ++ ++ RF S+L L + ++ A + R A E I G+SP+
Sbjct: 237 RTYRYVVRELKLEIEPADPEQYVPRFASDLDLSDESERQARELLRNAKEEAIHSGKSPVG 296
Query: 246 VAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLM 285
+AAAA+Y A+ +++K +Q E+ ++A V+EVTIR YK +
Sbjct: 297 LAAAAVYAAALLTNEKVTQNEVSEVANVSEVTIRNRYKEL 336
>gi|20094294|ref|NP_614141.1| transcription initiation factor IIB [Methanopyrus kandleri AV19]
gi|24212486|sp|Q8TX21.1|TF2B_METKA RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|19887337|gb|AAM02071.1| Transcription initiation factor IIB [Methanopyrus kandleri AV19]
Length = 307
Score = 141 bits (356), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 90/278 (32%), Positives = 144/278 (51%), Gaps = 11/278 (3%)
Query: 14 APLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDL 73
A ++ D G+ +C+ CGLV D VID G EWR F N SR G P L +
Sbjct: 21 AEIVFDEERGEYVCANCGLVTEDPVIDPGPEWRHF-NPDQRQRRSRTGEPVKLRLPDKGI 79
Query: 74 STMIGPGRGDASFDGFGMSKYQNRRTMN-------SSDRALLNAIREINSMADRINLTKT 126
ST+I D+ G + + RT + S +R A E+ ++A ++ L ++
Sbjct: 80 STIIDRELRDSG--GKKNPRMRRIRTWDARIKVSGSRERNFFQAFLELENLASKLQLPES 137
Query: 127 IVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKIS-KKEIG 185
+ + A +++++ + ++GR +++ A ++ AC++ VPRT +EI +S + EI
Sbjct: 138 VRELAASIYRKAYKEGIVRGRGIESVLGAAVFAACKEARVPRTAREIAEALGVSDENEIL 197
Query: 186 RCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPIS 245
R ++++ + L D + RF S L + VQ A I KA E I G+ P
Sbjct: 198 RAYRVLQRRLNLKQKPTEPSDHLPRFASKLGVSENVQAKAQEIIEKAKEKGITVGKGPAG 257
Query: 246 VAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
VAAAA+Y+AS ++R+QKEI ++A V EVTIR YK
Sbjct: 258 VAAAALYIASILEGERRTQKEIAEVARVTEVTIRNRYK 295
Score = 38.9 bits (89), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 43/79 (54%)
Query: 117 MADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAV 176
A ++ +++ + +A + ++ + G+ +A+A LYIA EG RT KEI V
Sbjct: 223 FASKLGVSENVQAKAQEIIEKAKEKGITVGKGPAGVAAAALYIASILEGERRTQKEIAEV 282
Query: 177 SKISKKEIGRCFKLILKAL 195
+++++ I +K I +AL
Sbjct: 283 ARVTEVTIRNRYKEICEAL 301
>gi|448482845|ref|ZP_21605616.1| transcription factor TFIIB cyclin-related protein [Halorubrum arcis
JCM 13916]
gi|445821131|gb|EMA70927.1| transcription factor TFIIB cyclin-related protein [Halorubrum arcis
JCM 13916]
Length = 331
Score = 141 bits (356), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 87/265 (32%), Positives = 140/265 (52%), Gaps = 6/265 (2%)
Query: 22 AGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLSTMIGPG- 80
A +++C++CGLVV ID G EWR+F ++ + +P R G P + LST IG
Sbjct: 63 AAERVCADCGLVVEADRIDHGPEWRSFDDDDA--NPKRTGAPLTRSRHDRGLSTEIGRST 120
Query: 81 --RGDASFDGFGMSKYQNRRTMNSS-DRALLNAIREINSMADRINLTKTIVDRANNLFKQ 137
+G M NR +++ DR + A EI + + L ++ D A LF
Sbjct: 121 KVKGRKRRRLARMRTQHNRAQISTKRDRNKVYAYTEIRRLTGVLELPDSVRDAACALFDS 180
Query: 138 VHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGRCFKLILKALET 197
+ L+GRS + A+AC+Y+ACR V RT E+CA +K ++ E F + + L
Sbjct: 181 AQEESLLRGRSLEGFAAACVYVACRTADVARTVGEVCAEAKATEDEHRAAFDAMNRELGL 240
Query: 198 SVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQA 257
+ +++ RF S+L V++ A +A +AVE I GR+P+ VAAA +Y A++
Sbjct: 241 PIAPSGPAEYLPRFASDLGCDPAVERRAGELAERAVEEGIANGRNPVGVAAACLYTAARE 300
Query: 258 SSDKRSQKEIGDIAGVAEVTIRQSY 282
+ +Q+E D+A V VT+R++Y
Sbjct: 301 LDAECTQQEAADVADVTPVTVRRTY 325
>gi|448427470|ref|ZP_21583785.1| transcription factor TFIIB cyclin-related protein [Halorubrum
terrestre JCM 10247]
gi|445678157|gb|ELZ30651.1| transcription factor TFIIB cyclin-related protein [Halorubrum
terrestre JCM 10247]
Length = 343
Score = 141 bits (356), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 87/265 (32%), Positives = 140/265 (52%), Gaps = 6/265 (2%)
Query: 22 AGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLSTMIGPG- 80
A +++C++CGLVV ID G EWR+F ++ + +P R G P + LST IG
Sbjct: 75 AAERVCADCGLVVEADRIDHGPEWRSFDDDDA--NPKRTGAPLTRSRHDRGLSTEIGRST 132
Query: 81 --RGDASFDGFGMSKYQNRRTMNSS-DRALLNAIREINSMADRINLTKTIVDRANNLFKQ 137
+G M NR +++ DR + A EI + + L ++ D A LF
Sbjct: 133 KVKGRKRRRLARMRTQHNRAQISTKRDRNKVYAYTEIRRLTGVLELPDSVRDAACALFDS 192
Query: 138 VHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGRCFKLILKALET 197
+ L+GRS + A+AC+Y+ACR V RT E+CA +K ++ E F + + L
Sbjct: 193 AQEESLLRGRSLEGFAAACVYVACRTADVARTVGEVCAEAKATEDEHRAAFDAMNRELGL 252
Query: 198 SVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQA 257
+ +++ RF S+L V++ A +A +AVE I GR+P+ VAAA +Y A++
Sbjct: 253 PIAPSGPAEYLPRFASDLGCDPAVERRAGELAERAVEEGIANGRNPVGVAAACLYTAARE 312
Query: 258 SSDKRSQKEIGDIAGVAEVTIRQSY 282
+ +Q+E D+A V VT+R++Y
Sbjct: 313 LDAECTQQEAADVADVTPVTVRRTY 337
>gi|110668479|ref|YP_658290.1| transcription initiation factor TFB [Haloquadratum walsbyi DSM
16790]
gi|109626226|emb|CAJ52683.1| transcription initiation factor TFB [Haloquadratum walsbyi DSM
16790]
Length = 346
Score = 141 bits (356), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 97/280 (34%), Positives = 160/280 (57%), Gaps = 11/280 (3%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLST 75
LI+D G+ +CS+CGLVV + ID G EWR F + + SRVG P L++ LST
Sbjct: 58 LIQDEARGETVCSDCGLVVDENSIDRGPEWRAFDSAERD-QKSRVGAPTTKLMHDKGLST 116
Query: 76 MIGPGRGDASFDGFG---------MSKYQNR-RTMNSSDRALLNAIREINSMADRINLTK 125
IG DA + + + R RT +S +R L A+ EI+ MA + L +
Sbjct: 117 NIGWQDKDAYGNALSARQREQMQRLRTWNERFRTRDSKERNLKQALGEIDRMASALGLPE 176
Query: 126 TIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIG 185
++ + A+ ++++ D L GRS + +A+A LY A RQ G PR+ EI VS++ + E+
Sbjct: 177 SVRETASVIYRRALDEDLLPGRSIEGVATAALYAAARQAGTPRSLDEIERVSRVDRMELT 236
Query: 186 RCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPIS 245
R ++ +++ L+ ++ ++ RF S+L L + ++ A + R A E I G+SP+
Sbjct: 237 RTYRYVVRELKLEIEPADPEQYVPRFASDLDLSDESERQARELLRNAKEEAIHSGKSPVG 296
Query: 246 VAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLM 285
+AAAA+Y A+ +++K +Q E+ ++A V+EVTIR YK +
Sbjct: 297 LAAAAVYAAALLTNEKVTQNEVSEVANVSEVTIRNRYKEL 336
>gi|449681721|ref|XP_004209907.1| PREDICTED: transcription initiation factor IIB-like [Hydra
magnipapillata]
Length = 209
Score = 141 bits (355), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 69/104 (66%), Positives = 80/104 (76%), Gaps = 1/104 (0%)
Query: 26 ICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLSTMIGPGRGDAS 85
+C ECGLVVGDRVIDVGSEWRTFSNE +GVD RVGG ENP L+G+DLSTM+G R S
Sbjct: 2 VCPECGLVVGDRVIDVGSEWRTFSNEANGVDRCRVGGGENPFLDGTDLSTMVGSDRASGS 61
Query: 86 -FDGFGMSKYQNRRTMNSSDRALLNAIREINSMADRINLTKTIV 128
D G ++YQNR ++ SDR+LLNA REI +MA RINL KTI
Sbjct: 62 GLDLQGYARYQNRSGISGSDRSLLNAFREIQTMASRINLPKTIT 105
>gi|448543870|ref|ZP_21625331.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-646]
gi|448551030|ref|ZP_21629172.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-645]
gi|448558595|ref|ZP_21633152.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-644]
gi|445706012|gb|ELZ57899.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-646]
gi|445710586|gb|ELZ62384.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-645]
gi|445712347|gb|ELZ64129.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-644]
Length = 288
Score = 141 bits (355), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 87/269 (32%), Positives = 142/269 (52%), Gaps = 10/269 (3%)
Query: 20 YRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLSTMIG- 78
+ AG+ +C++CGLVV + ID G EWR+F+++ +P+R G P + LST IG
Sbjct: 19 FEAGETVCTDCGLVVSEYRIDHGPEWRSFADDDR--NPARTGAPLTRSRHDRGLSTEIGR 76
Query: 79 ----PGRGDASFDGFGMSKYQNR-RTMNSSDRALLNAIREINSMADRINLTKTIVDRANN 133
GR F M + NR R +R + A EI + ++L I D+A +
Sbjct: 77 STRIKGRKRRQF--ARMRRQHNRARISTKRERNQVYAFTEIRRVTSALSLPNHIRDQACS 134
Query: 134 LFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGRCFKLILK 193
LF+ + L+GRS + A+AC+Y ACR GV R+ +E+C VSK ++ E + + +
Sbjct: 135 LFESAQNEDLLRGRSLEGFAAACVYAACRVAGVSRSVEEVCDVSKATEAEHQAAYGALNR 194
Query: 194 ALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYM 253
L V +++ RF + L L + ++ A +A + +V G++P VAAA +Y
Sbjct: 195 DLGLPVAPADPTEYLPRFATKLDLDSDTERRAREYVAEARDEGVVGGKNPCGVAAACLYT 254
Query: 254 ASQASSDKRSQKEIGDIAGVAEVTIRQSY 282
A+ + +Q E D+A V VT+R++Y
Sbjct: 255 AASDRGEDCTQAEAADVADVTPVTLRKTY 283
>gi|448638606|ref|ZP_21676456.1| transcription initiation factor IIB [Haloarcula sinaiiensis ATCC
33800]
gi|445763385|gb|EMA14584.1| transcription initiation factor IIB [Haloarcula sinaiiensis ATCC
33800]
Length = 286
Score = 141 bits (355), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 87/265 (32%), Positives = 137/265 (51%), Gaps = 10/265 (3%)
Query: 24 DQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLSTMIG----- 78
+ +C CGLVVG+ ID G EWR+F ++ + D +R G P + LST IG
Sbjct: 21 ESVCGSCGLVVGEDAIDPGPEWRSFEDDDT--DRARTGAPLTRSRHDRGLSTKIGRSTRL 78
Query: 79 PGRGDASFDGFGMSKYQNRRTMNSS-DRALLNAIREINSMADRINLTKTIVDRANNLFKQ 137
GR F + + NR ++S +R + A EI + + L+ I DRA LF+
Sbjct: 79 KGRKRRQF--ARLRREHNRAQISSKRERNKVYAFTEIRRIISSMALSDAIRDRACVLFES 136
Query: 138 VHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGRCFKLILKALET 197
+ L+GR+ + A+A +Y CR EGV RT E+C V+K ++ E+ + + + L
Sbjct: 137 AQNEDLLQGRTLEGFAAAAIYATCRTEGVARTVDELCTVAKATQAELRAAYDALNRELGL 196
Query: 198 SVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQA 257
I +++ RF + L LP V++ A + +A + +V GR+P VAAA +Y A+Q
Sbjct: 197 PTGPIDPREYVPRFATTLDLPTAVRQRAEQLVDEAQDRGLVSGRNPAGVAAACLYTAAQE 256
Query: 258 SSDKRSQKEIGDIAGVAEVTIRQSY 282
+Q E + A V VT+R +Y
Sbjct: 257 QDVALTQAEAAETADVTPVTLRGTY 281
>gi|448704008|ref|ZP_21700548.1| transcription initiation factor IIB [Halobiforma nitratireducens
JCM 10879]
gi|445796624|gb|EMA47125.1| transcription initiation factor IIB [Halobiforma nitratireducens
JCM 10879]
Length = 344
Score = 141 bits (355), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 88/275 (32%), Positives = 148/275 (53%), Gaps = 16/275 (5%)
Query: 23 GDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLSTMIGPGRG 82
G+++C++CGLV ID G EWR+F E S D SRVG P + LST IG
Sbjct: 60 GERVCADCGLVSDGDEIDYGPEWRSFEGETS--DRSRVGAPITERRHDKGLSTTIGWENR 117
Query: 83 DA---SFDGFGMSKYQNRRTMN-------SSDRALLNAIREINSMADRINLTKTIVDRAN 132
DA + G ++ RT N + +R L A+ E+ MA + L++ + A
Sbjct: 118 DAYGNTISGEKRAQLNRLRTWNERFTSKDARERNLKQALGELERMASALGLSEPCRETAA 177
Query: 133 NLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGRCFKLIL 192
++++ + + L GRS +A+ +A LY A RQ+G PRTF +VS++ + R ++ +
Sbjct: 178 VIYRRAVEEELLPGRSIEAMTTASLYAAARQQGTPRTFSAFESVSRVDDESTKRAYRYLS 237
Query: 193 KALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHI--ARKAVELDIVPGRSPISVAAAA 250
LE + ++ +F S+L++ + ++ A + A KA EL I G+SP + AAA
Sbjct: 238 SELELEIAPPEPEQYLRQFASDLAVSDETERLARDVLEAAKAEELHI--GKSPAGLTAAA 295
Query: 251 IYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLM 285
IY A + ++D+ +Q+ I + GV++ T+R Y+ +
Sbjct: 296 IYAAGRLTNDRVTQETIDETTGVSKFTVRNRYREL 330
>gi|292654406|ref|YP_003534303.1| transcription initiation factor TFB [Haloferax volcanii DS2]
gi|433424039|ref|ZP_20406390.1| transcription initiation factor TFB [Haloferax sp. BAB2207]
gi|448293951|ref|ZP_21484053.1| transcription initiation factor TFB [Haloferax volcanii DS2]
gi|448573512|ref|ZP_21640995.1| transcription initiation factor TFB [Haloferax lucentense DSM
14919]
gi|291370888|gb|ADE03115.1| transcription initiation factor TFB [Haloferax volcanii DS2]
gi|432198180|gb|ELK54492.1| transcription initiation factor TFB [Haloferax sp. BAB2207]
gi|445569344|gb|ELY23918.1| transcription initiation factor TFB [Haloferax volcanii DS2]
gi|445718418|gb|ELZ70108.1| transcription initiation factor TFB [Haloferax lucentense DSM
14919]
Length = 288
Score = 140 bits (354), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 87/269 (32%), Positives = 142/269 (52%), Gaps = 10/269 (3%)
Query: 20 YRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLSTMIG- 78
+ AG+ +C++CGLVV + ID G EWR+F+++ +P+R G P + LST IG
Sbjct: 19 FEAGETVCTDCGLVVSEYRIDHGPEWRSFADDDR--NPARTGAPLTRSRHDRGLSTEIGR 76
Query: 79 ----PGRGDASFDGFGMSKYQNR-RTMNSSDRALLNAIREINSMADRINLTKTIVDRANN 133
GR F M + NR R +R + A EI + ++L I D+A +
Sbjct: 77 STRIKGRKRRQF--ARMRRQHNRARISTKRERNQVYAFTEIRRVTSALSLPNHIRDQACS 134
Query: 134 LFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGRCFKLILK 193
LF+ + L+GRS + A+AC+Y ACR GV R+ +E+C VSK ++ E + + +
Sbjct: 135 LFESAQNEDLLRGRSLEGFAAACVYAACRVAGVSRSVEEVCDVSKATEAEHQAAYGALNR 194
Query: 194 ALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYM 253
L V +++ RF + L L + ++ A +A + +V G++P VAAA +Y
Sbjct: 195 DLGLPVAPADPTEYLPRFATKLDLDSDTERRAREYVAEARDEGLVGGKNPCGVAAACLYT 254
Query: 254 ASQASSDKRSQKEIGDIAGVAEVTIRQSY 282
A+ + +Q E D+A V VT+R++Y
Sbjct: 255 AASDRGEDCTQAEAADVADVTPVTLRKTY 283
>gi|448728406|ref|ZP_21710734.1| Transcription factor TFIIB cyclin-related protein [Halococcus
saccharolyticus DSM 5350]
gi|445796888|gb|EMA47373.1| Transcription factor TFIIB cyclin-related protein [Halococcus
saccharolyticus DSM 5350]
Length = 335
Score = 140 bits (354), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 88/280 (31%), Positives = 150/280 (53%), Gaps = 11/280 (3%)
Query: 13 DAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSD 72
D L++D G+ +CS+CGLVV + ID G EWR FS+++ R G P L++
Sbjct: 37 DGRLVDDDEHGETVCSDCGLVVDENEIDHGPEWRAFSSQERDR-KKRTGAPTTKLMHDKG 95
Query: 73 LSTMIGPGRGDASFDGFGMSKYQNR----------RTMNSSDRALLNAIREINSMADRIN 122
LS+ IG DA+ + K Q RT +S +R L A+ EI M +
Sbjct: 96 LSSQIGWQNRDANGNALSARKRQRMQRLRTWDERFRTRDSKERNLKQALGEIERMGSALG 155
Query: 123 LTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKK 182
+ K + + A+ ++++ L GRS + +++A LY RQ G+PR+ +++ AVS++ +
Sbjct: 156 VPKDVRETASVIYRRALAEDLLPGRSIEGVSTAALYAGIRQMGLPRSVEDVAAVSRVDEM 215
Query: 183 EIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRS 242
E R ++ I + L + ++SRF S+L + + ++ A + R A E G+S
Sbjct: 216 EFKRAYRYINQELGLEIGPPDPQQYVSRFASDLDVSDETERRARDLLRTAQEQAAHSGKS 275
Query: 243 PISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSY 282
P+ +A AA+Y A ++ + +Q E+ ++AGV+ VTIR Y
Sbjct: 276 PVGLAGAALYAAGILTNRQLTQDEVSEVAGVSNVTIRNRY 315
Score = 44.3 bits (103), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 46/78 (58%)
Query: 208 MSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEI 267
+ R S L +P V++ A+ I R+A+ D++PGRS V+ AA+Y + RS +++
Sbjct: 147 IERMGSALGVPKDVRETASVIYRRALAEDLLPGRSIEGVSTAALYAGIRQMGLPRSVEDV 206
Query: 268 GDIAGVAEVTIRQSYKLM 285
++ V E+ +++Y+ +
Sbjct: 207 AAVSRVDEMEFKRAYRYI 224
>gi|448466721|ref|ZP_21599226.1| transcription factor TFIIB cyclin-related protein [Halorubrum
kocurii JCM 14978]
gi|445813581|gb|EMA63558.1| transcription factor TFIIB cyclin-related protein [Halorubrum
kocurii JCM 14978]
Length = 336
Score = 140 bits (352), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 88/265 (33%), Positives = 137/265 (51%), Gaps = 6/265 (2%)
Query: 22 AGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLSTMIGPG- 80
A +++C +CGLVV ID G EWR+F ++ + +P R G P + LST IG
Sbjct: 68 AAERVCDDCGLVVEADRIDHGPEWRSFDDDDT--NPKRTGAPLTRSRHDRGLSTDIGRST 125
Query: 81 --RGDASFDGFGMSKYQNRRTMNSS-DRALLNAIREINSMADRINLTKTIVDRANNLFKQ 137
+G M NR +++ DR + A EI + + L ++ D A LF
Sbjct: 126 KVKGRKRRRLARMRTQHNRAQISTKRDRNKVYAYTEIRRLTGAMGLPDSVRDAACALFDS 185
Query: 138 VHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGRCFKLILKALET 197
L+GRS + A+AC+Y+ACR V RT E+CA +K ++ E F + + L
Sbjct: 186 AQSESLLRGRSLEGFAAACVYVACRTADVARTVGEVCAEAKATEAEHRAAFDAMNRELGL 245
Query: 198 SVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQA 257
+ G+++ RF S L V++ A +A +AVE I GR+P+ VAAA +Y A++
Sbjct: 246 PIAPTGPGEYLPRFASELDCDADVERRAGELADRAVEEGIANGRNPVGVAAACLYTAARE 305
Query: 258 SSDKRSQKEIGDIAGVAEVTIRQSY 282
+Q+E D+A V VT+R++Y
Sbjct: 306 LGADCTQQEAADVADVTPVTVRRTY 330
>gi|448739810|ref|ZP_21721814.1| transcription initiation factor TFB [Halococcus thailandensis JCM
13552]
gi|445798476|gb|EMA48880.1| transcription initiation factor TFB [Halococcus thailandensis JCM
13552]
Length = 323
Score = 140 bits (352), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 84/279 (30%), Positives = 145/279 (51%), Gaps = 13/279 (4%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLST 75
L D G++ C+ CGLVV + ID G EWR + +K SRVG P L++ LST
Sbjct: 33 LNHDSEHGERACTGCGLVVDEDEIDHGPEWRAHT-QKERDQKSRVGAPTTNLMHDKGLST 91
Query: 76 MIGPGRGDASFDGFGMSKYQN----------RRTMNSSDRALLNAIREINSMADRINLTK 125
I DA + K Q RT N +R L A EI MA + L +
Sbjct: 92 TISWQNKDAYGNALSPEKRQRMQRLRTWDERSRTRNPKERNLKQAFAEIERMASALGLPQ 151
Query: 126 TIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIG 185
++ + A ++++ + L GRS + +A+A ++IA RQ +PR+ + VS++ K I
Sbjct: 152 SVRETAGVIYRRAIEDGLLPGRSIEGVATAAIHIASRQANIPRSLDTLAEVSRVEKLSIT 211
Query: 186 RCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELD--IVPGRSP 243
R ++ + + L+ ++ +++ RF S+L L + V+ + + E + + G++P
Sbjct: 212 RTYRYVTRELDINLPPADPLEYLPRFVSDLDLSDEVEHRSRELLETVSEDEPSYLSGKNP 271
Query: 244 ISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSY 282
+ +AAAA+Y S ++K +Q +G++A +++VTIR Y
Sbjct: 272 VGLAAAAVYAGSLLCNEKVTQVAVGEVADISQVTIRNRY 310
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 50/78 (64%)
Query: 208 MSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEI 267
+ R S L LP V++ A I R+A+E ++PGRS VA AAI++AS+ ++ RS +
Sbjct: 140 IERMASALGLPQSVRETAGVIYRRAIEDGLLPGRSIEGVATAAIHIASRQANIPRSLDTL 199
Query: 268 GDIAGVAEVTIRQSYKLM 285
+++ V +++I ++Y+ +
Sbjct: 200 AEVSRVEKLSITRTYRYV 217
>gi|345006564|ref|YP_004809417.1| transcription factor TFIIB cyclin-like protein [halophilic archaeon
DL31]
gi|344322190|gb|AEN07044.1| Transcription factor TFIIB cyclin-related protein [halophilic
archaeon DL31]
Length = 284
Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 88/265 (33%), Positives = 139/265 (52%), Gaps = 7/265 (2%)
Query: 24 DQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLSTMIG-PGRG 82
+ +C+ CGLVV +D G EWR+F+++ + +P+R G P + LST IG GRG
Sbjct: 22 ETVCAGCGLVVSTDRLDRGPEWRSFADDDT--NPARCGAPLTRSRHDRGLSTEIGRTGRG 79
Query: 83 DASFDGFGMSKYQNRRTM--NSSDRALLNAIREINSMADRINLTKTIVDRANNLFKQVHD 140
+ + + Q+RRT + +R + EI + ++L I D+A +LF+ +
Sbjct: 80 KSR--KWSRLRRQHRRTQIRSKRERNQVYGFTEIRRLMGALSLPDRIRDQACSLFRSAQN 137
Query: 141 GKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGRCFKLILKALETSVD 200
L+GRS + ASA +Y ACR G+ RT EI VSK S E + + + L V
Sbjct: 138 EDLLRGRSIEGFASAGVYAACRVAGISRTSSEILEVSKASAGEHRAAYDALNRDLGLPVA 197
Query: 201 LITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSD 260
+F+ RF S L L Q+ A + +AVE GR+P VAA A+Y+A++ +
Sbjct: 198 AAEPAEFLPRFASELELEKATQRRARELTERAVEAGHANGRNPSGVAAGALYLAARCEDE 257
Query: 261 KRSQKEIGDIAGVAEVTIRQSYKLM 285
+Q E ++A V VT+R +Y+ +
Sbjct: 258 AITQAEAAEVADVTAVTVRTTYQAL 282
>gi|448473771|ref|ZP_21601913.1| transcription factor TFIIB cyclin-related protein [Halorubrum
aidingense JCM 13560]
gi|445819283|gb|EMA69132.1| transcription factor TFIIB cyclin-related protein [Halorubrum
aidingense JCM 13560]
Length = 353
Score = 139 bits (351), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 99/308 (32%), Positives = 154/308 (50%), Gaps = 43/308 (13%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTF-SNEKSGVDPSRVGGPENPLLNGSDLS 74
L D G+ +C +CGLVV + ID G EWR F ++EK SRVG P +++ LS
Sbjct: 35 LATDTEHGETVCVDCGLVVEEDEIDRGPEWRAFDASEKDS--KSRVGAPTTNMMHDKGLS 92
Query: 75 TMIGPGRGDA--------------------------SFDGFGMS-------KYQNRRTMN 101
T IG DA D +G S K Q RT N
Sbjct: 93 TNIGWQDKDAYGKSLSGAPTTNMMHDKGLSTNIGWQDKDAYGKSLSSRQREKMQRLRTWN 152
Query: 102 -------SSDRALLNAIREINSMADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIAS 154
S +R L A+ E++ MA + L + + A+ ++++ D L GRS + +++
Sbjct: 153 ERFRTRDSKERNLKQALGEVDRMASALGLPDNVRETASVIYRRALDEDLLPGRSIEGVST 212
Query: 155 ACLYIACRQEGVPRTFKEICAVSKISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSN 214
A LY A RQ G PR+ EI AVS++ K EI R ++ +++ L+ + ++ RF S+
Sbjct: 213 ASLYAAARQAGTPRSLDEIAAVSRVEKDEIARTYRYVVRELKLEIQPADPESYVPRFASD 272
Query: 215 LSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVA 274
L L + ++ A + A I G+SP+ +AAAA+Y AS ++K +Q E+ ++A ++
Sbjct: 273 LGLSDEAERRARSLLDTAKAQGIHSGKSPVGLAAAAVYAASLLVNEKVTQSEVSEVANIS 332
Query: 275 EVTIRQSY 282
EVTIR Y
Sbjct: 333 EVTIRNRY 340
>gi|448718282|ref|ZP_21703005.1| transcription initiation factor IIB [Halobiforma nitratireducens
JCM 10879]
gi|445784444|gb|EMA35255.1| transcription initiation factor IIB [Halobiforma nitratireducens
JCM 10879]
Length = 325
Score = 139 bits (351), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 85/278 (30%), Positives = 148/278 (53%), Gaps = 11/278 (3%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLST 75
++ D G+++C +CGLV+ + ID G EWR F N + + SRVG P ++ L+T
Sbjct: 37 IVHDPDRGERVCEQCGLVLTEDPIDYGPEWRAF-NAQEHDELSRVGAPLTQSMHDRGLTT 95
Query: 76 MIGPGRGDASFDGFGMSK---------YQNR-RTMNSSDRALLNAIREINSMADRINLTK 125
I DA+ K +Q R RT N+ +R L A+ EI+ M + +
Sbjct: 96 TIDWRNKDANGRSMSAEKHGQIHRLRVWQERIRTKNAGERNLKYALSEIDRMVSALGVPN 155
Query: 126 TIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIG 185
+ + A+ ++++ + ++GRS + +A++ LY ACR+E +PR+ +E+ AVS++ ++EIG
Sbjct: 156 PVKETASVIYRRALEQDLIRGRSIEGVATSALYTACRKEDIPRSLEEVTAVSRVDQREIG 215
Query: 186 RCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPIS 245
R ++ I L+ +++ F+ RFCS L + ++ A I + E + G+SP
Sbjct: 216 RTYRYIADELDINLEPTNPRQFVPRFCSELDVGKDIETKAVEIIDRTTEQGLHSGKSPTG 275
Query: 246 VAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
AAAAIY A + Q+ + + A VT+R Y+
Sbjct: 276 FAAAAIYAAGLLCDETIPQRAVAETAQTTVVTVRNRYR 313
>gi|110667127|ref|YP_656938.1| transcription initiation factor TFB [Haloquadratum walsbyi DSM
16790]
gi|385802543|ref|YP_005838943.1| transcription initiation factor TFB [Haloquadratum walsbyi C23]
gi|109624874|emb|CAJ51283.1| transcription initiation factor TFB [Haloquadratum walsbyi DSM
16790]
gi|339728035|emb|CCC39156.1| transcription initiation factor TFB [Haloquadratum walsbyi C23]
Length = 366
Score = 139 bits (351), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 88/277 (31%), Positives = 148/277 (53%), Gaps = 11/277 (3%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLST 75
++ D G+ IC +CGLV+ + +D G EWR F + K SRVG P ++ LST
Sbjct: 78 VVADDEHGETICDDCGLVITEDSVDRGPEWRAF-DAKEKDQKSRVGAPTTNTMHDKGLST 136
Query: 76 MIGPGRGDASFDGFG---------MSKYQNR-RTMNSSDRALLNAIREINSMADRINLTK 125
I DA + + K+ R RT +S +R L A+ E++ MA + L +
Sbjct: 137 NIDWRDRDAYGNSLSSNQRQKMQRLRKWNERFRTRDSKERNLKQALGEVDRMASALGLPE 196
Query: 126 TIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIG 185
+ + A+ ++++ D L GRS + ++++C+Y A R GVPR+ EI VS++ K E+
Sbjct: 197 NVRETASVIYRRALDEDLLPGRSIEGVSTSCVYAAARMAGVPRSLDEIAEVSRVPKSEVA 256
Query: 186 RCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPIS 245
R ++ I + L V ++ RF S L L + A + + A E + G+SP+
Sbjct: 257 RTYRYIARELSLEVKPADPEQYVPRFASELGLSDESTLRARQLLQNAKEKGVHSGKSPVG 316
Query: 246 VAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSY 282
+AAAA+Y A+ +++K +Q + ++A ++EVTIR Y
Sbjct: 317 LAAAAVYAAALLTNEKTTQAAVSEVADISEVTIRNRY 353
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 55/96 (57%), Gaps = 1/96 (1%)
Query: 208 MSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEI 267
+ R S L LP V++ A+ I R+A++ D++PGRS V+ + +Y A++ + RS EI
Sbjct: 185 VDRMASALGLPENVRETASVIYRRALDEDLLPGRSIEGVSTSCVYAAARMAGVPRSLDEI 244
Query: 268 GDIAGVAEVTIRQSYKLMYPHAS-KLFPQDFVFHTP 302
+++ V + + ++Y+ + S ++ P D + P
Sbjct: 245 AEVSRVPKSEVARTYRYIARELSLEVKPADPEQYVP 280
>gi|399576051|ref|ZP_10769808.1| transcription initiation factor iib (tfiib) [Halogranum salarium
B-1]
gi|399238762|gb|EJN59689.1| transcription initiation factor iib (tfiib) [Halogranum salarium
B-1]
Length = 288
Score = 139 bits (351), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 86/265 (32%), Positives = 140/265 (52%), Gaps = 7/265 (2%)
Query: 23 GDQ-ICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLSTMIGPG- 80
GD+ +C ECGLVV + ID G EWR+F+++ + +P R G P + LST IG
Sbjct: 20 GDETVCGECGLVVAEDRIDRGPEWRSFADDDT--NPERTGAPLTRSRHDRGLSTEIGRST 77
Query: 81 --RGDASFDGFGMSKYQNR-RTMNSSDRALLNAIREINSMADRINLTKTIVDRANNLFKQ 137
+G + + NR R + +R + A EI + R++L + + D A +L +
Sbjct: 78 RLKGRKRRQMARLRRQHNRARISSKRERNQVYAFTEIRRLVSRLSLPEQVRDHACSLVRS 137
Query: 138 VHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGRCFKLILKALET 197
+ ++GRS + A+A +Y ACR GV RT E+ V++ E + + + L
Sbjct: 138 AQNEDLVRGRSLEGFAAASVYAACRVAGVSRTVDEVTDVARADANEQQAAYDALNRELGL 197
Query: 198 SVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQA 257
V I +++ RF S L + V++ A +A +A E I GR+P VAAA +Y A++
Sbjct: 198 PVGPIDPVEYIPRFASKLDVDASVERRARTLAEEAREAGIATGRNPSGVAAACLYTAARG 257
Query: 258 SSDKRSQKEIGDIAGVAEVTIRQSY 282
+ + +Q+E D+AGV VT+R +Y
Sbjct: 258 TDGQLTQRETADVAGVTPVTLRNTY 282
>gi|448294148|ref|ZP_21484234.1| transcription initiation factor IIB [Halalkalicoccus jeotgali B3]
gi|445587483|gb|ELY41742.1| transcription initiation factor IIB [Halalkalicoccus jeotgali B3]
Length = 298
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 84/281 (29%), Positives = 146/281 (51%), Gaps = 11/281 (3%)
Query: 13 DAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSD 72
D +I+D G+ IC +CGLV+ V+D G +WR + + K + SR+G P L++
Sbjct: 6 DGLVIQDDEHGETICEDCGLVLDTDVVDHGPDWRAY-DSKERDEKSRIGAPTTQLMHDKG 64
Query: 73 LSTMIGPGRGDASFDGFG---------MSKYQNR-RTMNSSDRALLNAIREINSMADRIN 122
LSTMIG DA + ++ R RT ++ +R L A EI MA +
Sbjct: 65 LSTMIGWRDRDAYGHAISEQKRAQLQRLRQWDERFRTKDAHERNLKQAFGEIRRMASALG 124
Query: 123 LTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKK 182
L I + A L+++ + L GRS + +A+A LY A RQ PRT E+ VS++ +
Sbjct: 125 LPDPIRETAGVLYRRAVEDDLLPGRSIEGMATASLYTAARQHSTPRTLAELETVSRVKRL 184
Query: 183 EIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRS 242
I R ++ + + L ++ + ++ +F S L++ + + A + A + GRS
Sbjct: 185 RIQRAYRYLSRELGLRMEPVDPLQYVPQFASELNVSDEATRRARDLLTTAKAQGVHSGRS 244
Query: 243 PISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
P +AA AIY A++ ++++ +Q+ + + V+ +TIR Y+
Sbjct: 245 PAGLAAGAIYAATRLTNEQVTQETVRAVTHVSRMTIRIRYQ 285
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 58/103 (56%), Gaps = 6/103 (5%)
Query: 208 MSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEI 267
+ R S L LP+ +++ A + R+AVE D++PGRS +A A++Y A++ S R+ E+
Sbjct: 116 IRRMASALGLPDPIRETAGVLYRRAVEDDLLPGRSIEGMATASLYTAARQHSTPRTLAEL 175
Query: 268 GDIAGVAEVTIRQSYKLMYPHAS-KLFPQDFVFHTPIHELPQL 309
++ V + I+++Y+ + ++ P D P+ +PQ
Sbjct: 176 ETVSRVKRLRIQRAYRYLSRELGLRMEPVD-----PLQYVPQF 213
>gi|429190252|ref|YP_007175930.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natronobacterium gregoryi SP2]
gi|429134470|gb|AFZ71481.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natronobacterium gregoryi SP2]
Length = 325
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 97/280 (34%), Positives = 159/280 (56%), Gaps = 17/280 (6%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTF-SNEKSGVDPSRVGGPENPLLNGSDLS 74
L+ D G+ +C +CGLVV + ID G EWR F S EK + SRVG P +++ LS
Sbjct: 38 LVSDDERGETVCEDCGLVVDEGEIDRGPEWRAFDSAEKD--EKSRVGAPTTNMMHDQGLS 95
Query: 75 TMIGPGRGDASFDGFGMSKYQNR------------RTMNSSDRALLNAIREINSMADRIN 122
T IG DA G +S Q + RT +S +R L A+ EI+ MA +
Sbjct: 96 TNIGWQDKDAY--GKALSSRQRQKMQRLRTWNERFRTRDSKERNLKQALGEIDRMASALG 153
Query: 123 LTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKK 182
L + + + A+ ++++ + L GRS + +A+A LY A RQ G PR+ EI AVS++ K
Sbjct: 154 LPENVRETASVIYRRALEEDLLPGRSIEGVATAALYAAARQAGTPRSLDEISAVSRVEKD 213
Query: 183 EIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRS 242
EI R ++ +++ L + ++ RF S+L LP+ ++ A + + A + +I G+S
Sbjct: 214 EIARTYRYVVRELGLEIQPADPESYVPRFASDLDLPDETERRARQLLKTAKDAEIHSGKS 273
Query: 243 PISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSY 282
P+ +AAAA+Y A+ +++K +Q ++ ++A ++EVTIR Y
Sbjct: 274 PVGLAAAAVYAAALLTNEKVTQNDVSEVASISEVTIRNRY 313
Score = 41.2 bits (95), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 48/78 (61%)
Query: 208 MSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEI 267
+ R S L LP V++ A+ I R+A+E D++PGRS VA AA+Y A++ + RS EI
Sbjct: 145 IDRMASALGLPENVRETASVIYRRALEEDLLPGRSIEGVATAALYAAARQAGTPRSLDEI 204
Query: 268 GDIAGVAEVTIRQSYKLM 285
++ V + I ++Y+ +
Sbjct: 205 SAVSRVEKDEIARTYRYV 222
>gi|300713081|ref|YP_003738893.1| transcription initiation factor IIB [Halalkalicoccus jeotgali B3]
gi|299126765|gb|ADJ17102.1| transcription initiation factor IIB [Halalkalicoccus jeotgali B3]
Length = 345
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 84/281 (29%), Positives = 146/281 (51%), Gaps = 11/281 (3%)
Query: 13 DAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSD 72
D +I+D G+ IC +CGLV+ V+D G +WR + + K + SR+G P L++
Sbjct: 53 DGLVIQDDEHGETICEDCGLVLDTDVVDHGPDWRAY-DSKERDEKSRIGAPTTQLMHDKG 111
Query: 73 LSTMIGPGRGDASFDGFG---------MSKYQNR-RTMNSSDRALLNAIREINSMADRIN 122
LSTMIG DA + ++ R RT ++ +R L A EI MA +
Sbjct: 112 LSTMIGWRDRDAYGHAISEQKRAQLQRLRQWDERFRTKDAHERNLKQAFGEIRRMASALG 171
Query: 123 LTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKK 182
L I + A L+++ + L GRS + +A+A LY A RQ PRT E+ VS++ +
Sbjct: 172 LPDPIRETAGVLYRRAVEDDLLPGRSIEGMATASLYTAARQHSTPRTLAELETVSRVKRL 231
Query: 183 EIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRS 242
I R ++ + + L ++ + ++ +F S L++ + + A + A + GRS
Sbjct: 232 RIQRAYRYLSRELGLRMEPVDPLQYVPQFASELNVSDEATRRARDLLTTAKAQGVHSGRS 291
Query: 243 PISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
P +AA AIY A++ ++++ +Q+ + + V+ +TIR Y+
Sbjct: 292 PAGLAAGAIYAATRLTNEQVTQETVRAVTHVSRMTIRIRYQ 332
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 58/103 (56%), Gaps = 6/103 (5%)
Query: 208 MSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEI 267
+ R S L LP+ +++ A + R+AVE D++PGRS +A A++Y A++ S R+ E+
Sbjct: 163 IRRMASALGLPDPIRETAGVLYRRAVEDDLLPGRSIEGMATASLYTAARQHSTPRTLAEL 222
Query: 268 GDIAGVAEVTIRQSYKLMYPHAS-KLFPQDFVFHTPIHELPQL 309
++ V + I+++Y+ + ++ P D P+ +PQ
Sbjct: 223 ETVSRVKRLRIQRAYRYLSRELGLRMEPVD-----PLQYVPQF 260
>gi|448613430|ref|ZP_21663310.1| transcription initiation factor TFB [Haloferax mucosum ATCC
BAA-1512]
gi|445740327|gb|ELZ91833.1| transcription initiation factor TFB [Haloferax mucosum ATCC
BAA-1512]
Length = 326
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 87/254 (34%), Positives = 140/254 (55%), Gaps = 11/254 (4%)
Query: 40 DVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLSTMIGPGRGDASFDGFG--------- 90
D G EWR F N SRVG P ++ L+T I DA
Sbjct: 64 DPGPEWRAF-NHSERQSKSRVGAPTTQTMHDKGLTTTIDWKDKDAYGRSISSKKRSQMHR 122
Query: 91 MSKYQNR-RTMNSSDRALLNAIREINSMADRINLTKTIVDRANNLFKQVHDGKNLKGRSN 149
+ K+Q R RT ++ +R L A+ EI+ MA + + +++ + A+ ++++ + ++GRS
Sbjct: 123 LRKWQERIRTKDAGERNLQFALSEIDRMASALGVPRSVREVASVIYRRALNEDLIRGRSI 182
Query: 150 DAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGRCFKLILKALETSVDLITTGDFMS 209
+ +A++ LY ACR+EG+PR+ +EI VS++ +KEIGR ++ I + L + + ++
Sbjct: 183 EGVATSALYAACRKEGIPRSLEEISEVSRVERKEIGRTYRYISQELGLEMRPVDPKKYVP 242
Query: 210 RFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGD 269
RF S L L VQ A I E ++ G+SP AAAAIY AS ++K++Q+E+ D
Sbjct: 243 RFSSELDLSKEVQSKANEIIETTAEQGLLSGKSPTGFAAAAIYAASLLCNEKKTQREVAD 302
Query: 270 IAGVAEVTIRQSYK 283
+A V EVTIR Y+
Sbjct: 303 VAQVTEVTIRNRYQ 316
>gi|55379386|ref|YP_137236.1| transcription initiation factor IIB [Haloarcula marismortui ATCC
43049]
gi|448648697|ref|ZP_21679762.1| transcription initiation factor IIB [Haloarcula californiae ATCC
33799]
gi|55232111|gb|AAV47530.1| transcription initiation factor IIB [Haloarcula marismortui ATCC
43049]
gi|445774441|gb|EMA25457.1| transcription initiation factor IIB [Haloarcula californiae ATCC
33799]
Length = 286
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 86/265 (32%), Positives = 137/265 (51%), Gaps = 10/265 (3%)
Query: 24 DQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLSTMIG----- 78
+ +C CGLVVG+ ID G EWR+F ++ + D +R G P + LST IG
Sbjct: 21 ESVCGSCGLVVGEDAIDPGPEWRSFEDDDT--DRARTGAPLTRSRHDRGLSTKIGRSTRL 78
Query: 79 PGRGDASFDGFGMSKYQNRRTMNSS-DRALLNAIREINSMADRINLTKTIVDRANNLFKQ 137
GR F + + NR ++S +R + A EI + + L+ I DRA LF+
Sbjct: 79 KGRKRRQF--ARLRREHNRAQISSKRERNKVYAFTEIRRIISSMALSDAIRDRACVLFES 136
Query: 138 VHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGRCFKLILKALET 197
+ L+GR+ + A+A +Y CR EGV RT E+C V+K ++ E+ + + + L
Sbjct: 137 AQNEDLLQGRTLEGFAAAAIYATCRTEGVARTVDELCTVAKATQAELRAAYDALNRELGL 196
Query: 198 SVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQA 257
I +++ RF + L LP V++ A + +A + +V GR+P VAAA +Y A+Q
Sbjct: 197 PTGPIDPREYVPRFATTLDLPTAVRQRAEQLVDEAQDRGLVSGRNPAGVAAACLYTAAQE 256
Query: 258 SSDKRSQKEIGDIAGVAEVTIRQSY 282
+Q + + A V VT+R +Y
Sbjct: 257 QDVALTQAKAAETADVTPVTLRGTY 281
>gi|359417747|ref|ZP_09209816.1| transcription initiation factor IIB [Candidatus Haloredivivus sp.
G17]
gi|358031840|gb|EHK00675.1| transcription initiation factor IIB [Candidatus Haloredivivus sp.
G17]
Length = 306
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 84/252 (33%), Positives = 132/252 (52%), Gaps = 7/252 (2%)
Query: 6 VCCYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPEN 65
+ C E ED G+ IC ECG V+ + ID +EWR F+ E+ +R G P
Sbjct: 56 LTCPECGSQRFEEDSAKGELICIECGFVMDEDRIDESAEWRAFNAEEK-EKKARAGQPLT 114
Query: 66 PLLNGSDLSTMIGPGRGDA-SFDGFGMSKY-----QNRRTMNSSDRALLNAIREINSMAD 119
+ +ST IG G G+ G ++Y ++R S DR L A+ E+NSM
Sbjct: 115 YTKHDMGVSTEIGKGSGELYKVSGNKRAQYYRLRKWHKRLTKSKDRNLGFALSELNSMIS 174
Query: 120 RINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKI 179
+NL +++ + L+++ D ++GRS ++I SA +YI R++G PRT EI S I
Sbjct: 175 NLNLPESVHEETARLYEKAVDQGLVRGRSMESIISALIYIVARKQGTPRTLDEISDASGI 234
Query: 180 SKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVP 239
K+EIGR ++ + + L + D++ RF L L VQ A +I ++A E D++
Sbjct: 235 EKREIGRAYRYVARELGLRILPAKPQDYVPRFAGKLQLSGEVQARARNILKEARERDLLS 294
Query: 240 GRSPISVAAAAI 251
G+ P +AAAA+
Sbjct: 295 GKGPTGLAAAAL 306
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 49/95 (51%), Gaps = 4/95 (4%)
Query: 208 MSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEI 267
++ SNL+LP V + + KAV+ +V GRS S+ +A IY+ ++ R+ EI
Sbjct: 169 LNSMISNLNLPESVHEETARLYEKAVDQGLVRGRSMESIISALIYIVARKQGTPRTLDEI 228
Query: 268 GDIAGVAEVTIRQSYKLMYPHASKLF----PQDFV 298
D +G+ + I ++Y+ + PQD+V
Sbjct: 229 SDASGIEKREIGRAYRYVARELGLRILPAKPQDYV 263
>gi|448720890|ref|ZP_21703484.1| transcription initiation factor IIB [Halobiforma nitratireducens
JCM 10879]
gi|445780503|gb|EMA31385.1| transcription initiation factor IIB [Halobiforma nitratireducens
JCM 10879]
Length = 355
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 96/322 (29%), Positives = 158/322 (49%), Gaps = 47/322 (14%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTF-SNEKSGVDPSRVGGPENPLLNGSDLS 74
L+ D + +C +CGLVV + ID G EWR F + EK + SRVG P +++ LS
Sbjct: 37 LVSDTEHAETVCDDCGLVVEEDEIDRGPEWRAFDAAEKD--EKSRVGAPTTNMMHDQGLS 94
Query: 75 TMIGPGRGDASFDGFGMSKYQNR------------------------------------- 97
T IG DA G +S Q +
Sbjct: 95 TNIGWQDKDAY--GKALSSRQRQKMQRLRTWNERFRTRDSKERNLXLSSRQRQKMQRLRT 152
Query: 98 -----RTMNSSDRALLNAIREINSMADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAI 152
RT +S +R L A+ EI+ MA + L + + + A+ ++++ + L GRS + +
Sbjct: 153 WNERFRTRDSKERNLKQALGEIDRMASALGLPENVRETASVIYRRALEEDLLPGRSIEGV 212
Query: 153 ASACLYIACRQEGVPRTFKEICAVSKISKKEIGRCFKLILKALETSVDLITTGDFMSRFC 212
A+A LY A RQ G PR+ EI AVS++ K E+ R ++ +++ L V ++ RF
Sbjct: 213 ATASLYAAARQAGTPRSLDEISAVSRVDKMELTRTYRYVIRELGLEVQPADPESYVPRFV 272
Query: 213 SNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAG 272
S+L L + ++ A + A E + G+SP+ +AAA +Y A+ +++K +Q E+ ++A
Sbjct: 273 SDLDLSDETERMARELLDSAREEGVHSGKSPVGLAAAGVYAAALLTNEKVTQNEVSEVAS 332
Query: 273 VAEVTIRQSYKLMYPHASKLFP 294
++EVTIR YK + + P
Sbjct: 333 ISEVTIRNRYKELLEASDSAAP 354
>gi|429190412|ref|YP_007176090.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natronobacterium gregoryi SP2]
gi|429134630|gb|AFZ71641.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natronobacterium gregoryi SP2]
Length = 324
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 98/292 (33%), Positives = 160/292 (54%), Gaps = 17/292 (5%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTF-SNEKSGVDPSRVGGPENPLLNGSDLS 74
L+ D + +CS+CGLVV + ID G EWR F S EK + SRVG P +++ LS
Sbjct: 36 LVSDAEHAETVCSDCGLVVEEDEIDRGPEWRAFDSAEKD--EKSRVGAPTTNMMHDQGLS 93
Query: 75 TMIGPGRGDASFDGFGMSKYQNR------------RTMNSSDRALLNAIREINSMADRIN 122
T IG DA G +S Q + RT +S +R L A+ EI+ MA +
Sbjct: 94 TNIGWQDKDAY--GKALSSRQRQKMQRLRTWNERFRTRDSKERNLKQALGEIDRMASALG 151
Query: 123 LTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKK 182
L + + + A+ ++++ + L GRS + +A+A LY A RQ G PR+ EI AVS++ K
Sbjct: 152 LPENVRETASVIYRRALEEDLLPGRSIEGVATAALYAAARQAGTPRSLDEISAVSRVEKM 211
Query: 183 EIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRS 242
E+ R ++ +++ L V ++ RF S+L LP+ ++ A + A + + G+S
Sbjct: 212 ELTRTYRYVIRELGLEVQPADPESYVPRFVSDLDLPDETERMARELLESARQEGVHSGKS 271
Query: 243 PISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKLFP 294
P+ +AAA +Y A+ +++K +Q E+ ++A ++EVTIR YK + + P
Sbjct: 272 PVGLAAAGVYAAALLTNEKVTQNEVSEVANISEVTIRNRYKELLEASDTATP 323
>gi|448733793|ref|ZP_21716035.1| Transcription factor TFIIB cyclin-related protein [Halococcus
salifodinae DSM 8989]
gi|445802313|gb|EMA52620.1| Transcription factor TFIIB cyclin-related protein [Halococcus
salifodinae DSM 8989]
Length = 335
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 87/277 (31%), Positives = 146/277 (52%), Gaps = 11/277 (3%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLST 75
L+ D G+ C+ECGLVV + ID G EWR F + + R G P L++ LS+
Sbjct: 40 LVNDAEHGETTCAECGLVVDENEIDHGPEWRAFDSAERDR-KKRTGAPTTKLMHDEGLSS 98
Query: 76 MIGPGRGDASFDGFGMSKYQNR----------RTMNSSDRALLNAIREINSMADRINLTK 125
IG DA+ + K Q RT NS +R L A+ EI M + + K
Sbjct: 99 QIGWQNRDANGNALSARKRQRMQRLRTWDERFRTRNSKERNLKQALGEIERMGSALGVPK 158
Query: 126 TIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIG 185
+ + A+ ++++ L GRS + +++A LY A RQ G+PR+ +++ AV+++ + E
Sbjct: 159 DVRETASVIYRRALAEDLLPGRSIEGVSTAALYAAIRQMGLPRSVEDVAAVTRVDEMEFK 218
Query: 186 RCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPIS 245
R ++ I + L + ++SRF S+L + + ++ A + R A E G+SP+
Sbjct: 219 RAYRYINQELGLEIGPPDPQQYVSRFASDLDVNDETERRARDLLRTAQEQAAHSGKSPVG 278
Query: 246 VAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSY 282
+A AA+Y A ++ + +Q E+ ++AGV+ VTIR Y
Sbjct: 279 LAGAALYAAGLLTNRELTQNEVSEVAGVSNVTIRNRY 315
Score = 45.4 bits (106), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 46/78 (58%)
Query: 208 MSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEI 267
+ R S L +P V++ A+ I R+A+ D++PGRS V+ AA+Y A + RS +++
Sbjct: 147 IERMGSALGVPKDVRETASVIYRRALAEDLLPGRSIEGVSTAALYAAIRQMGLPRSVEDV 206
Query: 268 GDIAGVAEVTIRQSYKLM 285
+ V E+ +++Y+ +
Sbjct: 207 AAVTRVDEMEFKRAYRYI 224
>gi|335433790|ref|ZP_08558606.1| Transcription factor TFIIB cyclin-related protein [Halorhabdus
tiamatea SARL4B]
gi|334898428|gb|EGM36536.1| Transcription factor TFIIB cyclin-related protein [Halorhabdus
tiamatea SARL4B]
Length = 273
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 90/270 (33%), Positives = 147/270 (54%), Gaps = 6/270 (2%)
Query: 24 DQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLSTMIGPGRGD 83
+ ICSECGLVV + ID G EWR+F ++++ D R G P + + LST IG RG
Sbjct: 6 EAICSECGLVVSEARIDHGPEWRSFDDDQT--DRRRTGPPVSRSRHDHGLSTRIGRDRGA 63
Query: 84 ASFDGFGMSKY--QNRRTMNSS--DRALLNAIREINSMADRINLTKTIVDRANNLFKQVH 139
+++ Q+RR+ SS +R L+ I EI + R++L+++ + A LF+
Sbjct: 64 PPRRRRRIARLRRQHRRSQTSSKAERNLMYGIMEIRRLVGRLSLSRSFREDACVLFETSQ 123
Query: 140 DGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGRCFKLILKALETSV 199
L GRS + +A+A +Y CR GV RT +E+ V+ S+ E+ + + + L
Sbjct: 124 GEGLLHGRSIEGMAAAAVYAVCRIAGVSRTVEEVSTVAHASEDELTVAYTALNRELGLET 183
Query: 200 DLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASS 259
I +++ RF S L L V++ A +A E ++ GR+P VAAA +Y A++
Sbjct: 184 GPIDPREYLPRFASRLDLRVDVERRARELASFVTEENLAGGRAPSGVAAACLYTAAREGD 243
Query: 260 DKRSQKEIGDIAGVAEVTIRQSYKLMYPHA 289
+Q+E+ D+AGVA T+R +Y+ ++ A
Sbjct: 244 ADVTQREVADVAGVAPATLRSTYQDVHSKA 273
>gi|383625409|ref|ZP_09949815.1| transcription factor TFIIB cyclin-like protein [Halobiforma
lacisalsi AJ5]
gi|448700388|ref|ZP_21699496.1| transcription factor TFIIB cyclin-like protein [Halobiforma
lacisalsi AJ5]
gi|445779928|gb|EMA30843.1| transcription factor TFIIB cyclin-like protein [Halobiforma
lacisalsi AJ5]
Length = 321
Score = 139 bits (349), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 87/286 (30%), Positives = 149/286 (52%), Gaps = 11/286 (3%)
Query: 8 CYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPL 67
C E ++ D +++C +CGLV+ + ID G EWR F N + + SRVG P
Sbjct: 25 CPECETDTIVHDPDRSERVCEQCGLVLTEDPIDYGPEWRAF-NAQEHDELSRVGAPLTQS 83
Query: 68 LNGSDLSTMIGPGRGDASFDGFGMSK---------YQNR-RTMNSSDRALLNAIREINSM 117
++ L+T I DA+ K +Q R RT N+ +R L A+ EI+ M
Sbjct: 84 MHDRGLTTTIDWRNKDANGRSMSAEKHGQIHRLRVWQERIRTKNAGERNLKYALSEIDRM 143
Query: 118 ADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVS 177
+ + + + A+ ++++ + ++GRS + +A++ LY ACR+E +PR+ +E+ AVS
Sbjct: 144 VSALGVPTPVKETASVIYRRALEQDLIRGRSIEGVATSALYTACRKEDIPRSLEEVTAVS 203
Query: 178 KISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDI 237
++ ++EIGR ++ I L+ +++ F+ RFCS L + V+ A I + E +
Sbjct: 204 RVDQREIGRTYRYIADELDINLEPTNPRQFVPRFCSELDVGKDVETKAVEIIEQTTEQGL 263
Query: 238 VPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
G+SP AAAAIY A + Q+ + + A VT+R Y+
Sbjct: 264 HSGKSPTGFAAAAIYAAGLLCDETIPQRAVAETAQTTVVTVRNRYR 309
>gi|409096766|ref|ZP_11216790.1| transcription initiation factor IIB [Thermococcus zilligii AN1]
Length = 303
Score = 138 bits (348), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 90/275 (32%), Positives = 151/275 (54%), Gaps = 11/275 (4%)
Query: 19 DYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLSTMI- 77
D G+ C+ CG V+ ++D EWR F E+ +R G P +++ LST I
Sbjct: 18 DRSRGEYYCAGCGQVLEWNIVDEEPEWRAFEPEQRE-KRARTGPPMTNMIHDKGLSTDID 76
Query: 78 --------GPGRGDASFDGFGMSKYQNRRTMN-SSDRALLNAIREINSMADRINLTKTIV 128
P G + +Q R +N +++R L A+ E++ MA ++ L K +
Sbjct: 77 WRDKDIHGNPITGVYRNKMRRLRMWQRRMRINDAAERNLAFALSELDRMAVQMGLPKRVK 136
Query: 129 DRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGRCF 188
++A L+++ K ++GRS + + SA LY ACR EG+PRT EI SK++KKEIGR +
Sbjct: 137 EQAAVLYRKAVMKKLIRGRSIEGMVSAALYAACRMEGIPRTLDEIARFSKVTKKEIGRSY 196
Query: 189 KLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAA 248
+ + + L ++ + D++ RF L + +K A I ++A+ + I G+ P +AA
Sbjct: 197 RFMARGLGLNLLPTSPIDYVDRFGDALGVSARTKKRAREILQEAIRVGITSGKGPTGLAA 256
Query: 249 AAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
AA+Y+AS +K++Q+E+ ++A V EVT+R YK
Sbjct: 257 AALYLASLLEGEKKTQREVAEVANVTEVTVRNRYK 291
Score = 43.1 bits (100), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 40/78 (51%)
Query: 208 MSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEI 267
+ R + LP V++ A + RKAV ++ GRS + +AA+Y A + R+ EI
Sbjct: 122 LDRMAVQMGLPKRVKEQAAVLYRKAVMKKLIRGRSIEGMVSAALYAACRMEGIPRTLDEI 181
Query: 268 GDIAGVAEVTIRQSYKLM 285
+ V + I +SY+ M
Sbjct: 182 ARFSKVTKKEIGRSYRFM 199
>gi|257053235|ref|YP_003131068.1| Transcription factor TFIIB cyclin-related [Halorhabdus utahensis
DSM 12940]
gi|256691998|gb|ACV12335.1| Transcription factor TFIIB cyclin-related [Halorhabdus utahensis
DSM 12940]
Length = 290
Score = 138 bits (348), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 93/278 (33%), Positives = 149/278 (53%), Gaps = 8/278 (2%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLST 75
L+ D R + IC +CGLVV + ID G EWR+F ++ S D R G P + + LST
Sbjct: 17 LLRDGR--ETICHDCGLVVSEARIDRGPEWRSFDDDTS--DRRRTGPPVSRSRHDHGLST 72
Query: 76 MIGPGRGDASFDGFGMSKY--QNRRTMNSS--DRALLNAIREINSMADRINLTKTIVDRA 131
IG RG +++ Q+RR+ +S +R L+ I EI + R++L+++ D A
Sbjct: 73 RIGRDRGAPPRRRRRIARLRRQHRRSQTASKAERNLMYGIMEIRRLVGRLSLSRSFRDDA 132
Query: 132 NNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGRCFKLI 191
LF+ L GRS + +A+A +Y CR GV RT +E+ V+ S+ E+ + +
Sbjct: 133 CVLFETAQGEGLLHGRSIEGMAAAAVYAVCRIAGVSRTVEEVATVAHASEDELTVAYAAV 192
Query: 192 LKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAI 251
+ L I +++ RF S L L V++ A +A E ++ GR+P VAAA +
Sbjct: 193 NRELGLETGPIDPREYLPRFASRLDLRTDVERRARELAAFVSEENLAGGRAPSGVAAACL 252
Query: 252 YMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHA 289
Y A++ +Q+E+ DIAGVA T+R +Y+ ++ A
Sbjct: 253 YTAARERKVDVTQREVADIAGVAPATLRSTYQDVHSKA 290
>gi|357116811|ref|XP_003560170.1| PREDICTED: transcription initiation factor IIB-like [Brachypodium
distachyon]
Length = 332
Score = 138 bits (348), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 100/309 (32%), Positives = 153/309 (49%), Gaps = 41/309 (13%)
Query: 22 AGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGV----DPSRVGGPENPLLNGSDLSTMI 77
+GD +C+EC LV+ +R +D EWR F N PS + ++ L L T +
Sbjct: 27 SGDTVCTECSLVLKERYVDESLEWRNFLNHGPAAPADKSPSHI---DDHFLTNLQLGTAV 83
Query: 78 -GPGRGDASFD-------GFGMSKYQNRRTMNSS--DRALLNAIREINSMADRINLTKTI 127
GP G+A D G G+ K + ++ +R L A + ++ MA+R+ L +
Sbjct: 84 AGPATGNAETDVALPRKRGGGVPKKRGAAAAAAAAPNRTLAEAFQAMDGMAERLGLATAV 143
Query: 128 VDRANNLFKQVHDGKNL----KGRSNDAIASACLYIACRQEGVPRTFKEICAVSKIS--- 180
DRA + +++ D K K R+ A+ +ACL++ACR EG P TFKE+ +V+ S
Sbjct: 144 KDRAKEVLRKLEDAKAFPKGGKCRNRLALYAACLHVACRAEGTPLTFKELASVTGDSVTA 203
Query: 181 -KKEIGRCFKLILKALETSVD--------------LITTGDFMSRFCSNLSLPNMVQKAA 225
K+IGR K I LE ++ GD++ RF S L + AA
Sbjct: 204 GMKDIGRLVKHIRNHLEDQDQDAEGTQAATLEMGAVVRAGDYLCRFGSLLGMGQEELHAA 263
Query: 226 THIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSY-KL 284
R+ +E D+ R+P S+AA IYMA Q +S +++ GV+EVTIR+ + K
Sbjct: 264 QEAVRR-LEKDLDVRRNPDSIAATVIYMAIQRGGAGKSIRDVSAATGVSEVTIREVHNKD 322
Query: 285 MYPHASKLF 293
+ PHA LF
Sbjct: 323 LSPHADLLF 331
>gi|76801766|ref|YP_326774.1| transcription initiation factor TFB 3 [Natronomonas pharaonis DSM
2160]
gi|76557631|emb|CAI49214.1| transcription initiation factor TFB [Natronomonas pharaonis DSM
2160]
Length = 319
Score = 138 bits (348), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 100/295 (33%), Positives = 152/295 (51%), Gaps = 18/295 (6%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTF-SNEKSGVDPSRVGGPENPLLNGSDLS 74
L D G+ +C +CGLVV + ID G EWR F S EK + SRVG P +++ LS
Sbjct: 31 LAADTEHGETVCRDCGLVVEEDEIDRGPEWRAFDSAEKD--EKSRVGAPTTNMMHDKGLS 88
Query: 75 TMIGPGRGDA---SFDGFGMSKYQNRRTMN-------SSDRALLNAIREINSMADRINLT 124
T I DA S D K Q R N S +R L A+ EI+ MA + L
Sbjct: 89 TNIDWRDQDAYGNSLDSRQRQKMQRLRKWNERFRTRDSKERNLKQALGEIDRMASALGLP 148
Query: 125 KTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEI 184
+ + A+ ++++ D L GRS + +++A +Y A RQ GVPR+ E+ VS++ K EI
Sbjct: 149 DNVRETASVIYRRALDENLLPGRSIEGVSTASVYAAARQAGVPRSLDEVAGVSRVEKSEI 208
Query: 185 GRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPI 244
R ++ +++ L V ++ RF S L L + A + + A E + G+SP+
Sbjct: 209 ARTYRYVVRELGLEVQPADPESYVPRFASELELSEEAENRARQLLQNAKEQGVHSGKSPV 268
Query: 245 SVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKLFPQDFVF 299
+AAAA+Y AS +++K +Q + ++A ++EVTIR Y H QD F
Sbjct: 269 GLAAAAVYAASLLTNEKTTQAAVSEVADISEVTIRNRY-----HELLEAEQDLAF 318
>gi|336254453|ref|YP_004597560.1| transcription initiation factor IIB [Halopiger xanaduensis SH-6]
gi|335338442|gb|AEH37681.1| Transcription initiation factor IIB [Halopiger xanaduensis SH-6]
Length = 320
Score = 138 bits (347), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 86/278 (30%), Positives = 147/278 (52%), Gaps = 11/278 (3%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLST 75
++ D G+++C ECGLV+ + ID G EWR F N + + SRVG P ++ L+T
Sbjct: 29 IVHDPDRGERVCEECGLVLTEDPIDYGPEWRAF-NAQEHDELSRVGAPLTQSMHDRGLTT 87
Query: 76 MIGPGRGDASFDGFGMSK---------YQNR-RTMNSSDRALLNAIREINSMADRINLTK 125
I DA+ K +Q R RT N+ +R L A+ EI+ M + +
Sbjct: 88 TIDWRNKDANGHSMSAEKQGQIHRLRVWQERIRTKNAGERNLKYALSEIDRMVSALGVPD 147
Query: 126 TIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIG 185
+ + A+ ++++ + ++GRS + +A++ LY ACR+E +PR+ +E+ +VS++ ++EIG
Sbjct: 148 PVKETASVIYRRALEKDLIRGRSIEGVATSALYTACRKEDIPRSLEEVTSVSRVDQREIG 207
Query: 186 RCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPIS 245
R ++ I L +++ F+ RFCS L + V+ A I + E + G+SP
Sbjct: 208 RTYRYIADELGINLEPTNPRQFVPRFCSELDVGKDVETKAVEIIDETTEQGLHSGKSPTG 267
Query: 246 VAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
AAAAIY A + Q+ + + A VT+R Y+
Sbjct: 268 FAAAAIYAAGLLCDETIPQRAVAETAQTTVVTVRNRYR 305
>gi|448737841|ref|ZP_21719874.1| transcription initiation factor IIB [Halococcus thailandensis JCM
13552]
gi|445802803|gb|EMA53104.1| transcription initiation factor IIB [Halococcus thailandensis JCM
13552]
Length = 271
Score = 138 bits (347), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 86/268 (32%), Positives = 138/268 (51%), Gaps = 12/268 (4%)
Query: 22 AGDQI-CSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLSTMIG-- 78
AG++ C +CGLV+G+ +D G EWR F + G D R G P + LST IG
Sbjct: 4 AGEETYCLDCGLVIGEDRVDRGPEWRNFED---GPDRKRTGAPLTRSRHDRGLSTEIGRS 60
Query: 79 ---PGRGDASFDGFGMSKYQNRRTMNS-SDRALLNAIREINSMADRINLTKTIVDRANNL 134
GR F + + NR ++S ++R + E+ M + L +I DRA L
Sbjct: 61 TRLTGRKRRLF--ARLRRQHNRTRISSRAERNRVYGFTEVRRMVGALGLPDSIRDRACVL 118
Query: 135 FKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGRCFKLILKA 194
F+ + L+GRS + A+A +Y CR E + RT EI V+K ++ E+ + + +
Sbjct: 119 FESAQNEDLLRGRSLEGFAAAAVYAVCRTEALSRTLAEIGTVAKATRDELTAAYDALNRE 178
Query: 195 LETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMA 254
L I ++++RF + L LPN +++ A + K+ +L + GR+P VAAA +Y A
Sbjct: 179 LGLPTGPIDPEEYLARFANQLDLPNEIERRARALVEKSHDLGLTNGRNPSGVAAACLYTA 238
Query: 255 SQASSDKRSQKEIGDIAGVAEVTIRQSY 282
+ +Q+ D+AGV VT+R +Y
Sbjct: 239 ATERDHALTQQSAADVAGVTPVTLRTTY 266
>gi|448494476|ref|ZP_21609463.1| transcription factor TFIIB cyclin-related protein [Halorubrum
californiensis DSM 19288]
gi|445689311|gb|ELZ41551.1| transcription factor TFIIB cyclin-related protein [Halorubrum
californiensis DSM 19288]
Length = 336
Score = 138 bits (347), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 85/264 (32%), Positives = 139/264 (52%), Gaps = 6/264 (2%)
Query: 23 GDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLSTMIGPG-- 80
+++C++CGLVV ID G EWR+F ++ + +P R G P + LST IG
Sbjct: 69 AERVCTDCGLVVEADRIDHGPEWRSFDDDDT--NPKRTGAPLTRSRHDRGLSTEIGRSTK 126
Query: 81 -RGDASFDGFGMSKYQNRRTMNSS-DRALLNAIREINSMADRINLTKTIVDRANNLFKQV 138
+G M NR +++ DR + A EI + + L ++ D A LF
Sbjct: 127 VKGRKRRRLARMRTQHNRAQISTKRDRNKVYAYTEIRRLTGVMGLPDSVRDAACALFDSA 186
Query: 139 HDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGRCFKLILKALETS 198
+ L+GRS + A+AC+Y+ACR V RT E+CA +K ++ E F + + L
Sbjct: 187 QEESLLRGRSLEGFAAACVYVACRTADVARTVGEVCAEAKATEDEHRAAFDAMNRELGLP 246
Query: 199 VDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQAS 258
+ +++ RF S+L V++ A +A +AV+ I GR+P+ VAAA +Y A++
Sbjct: 247 IAPSGPAEYLPRFASDLDCDPAVERRAGELADRAVKEGIANGRNPVGVAAACLYTAAREL 306
Query: 259 SDKRSQKEIGDIAGVAEVTIRQSY 282
+ +Q+E D+A V VT+R++Y
Sbjct: 307 DAECTQQEAADVADVTPVTVRRTY 330
>gi|52550004|gb|AAU83853.1| transcription initiation factor IIB [uncultured archaeon GZfos34G5]
Length = 306
Score = 138 bits (347), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 94/276 (34%), Positives = 148/276 (53%), Gaps = 9/276 (3%)
Query: 8 CYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPL 67
C E +I D R + C++CG+V+ + ++D+G EWR++ E++ R G P +
Sbjct: 15 CPECGSKNVITDSRHAELYCADCGIVIAENIVDLGPEWRSYDEEQAS-KRIRTGPPMSYR 73
Query: 68 LNGSDLSTMIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADRINLTKTI 127
++ L T PG + G+S ++SSD+ L A+ EI+ MA + L I
Sbjct: 74 IHDKGLGTPT-PGLPARTRRLRGIS-------IDSSDKTLAFALVEIDRMACALGLPNNI 125
Query: 128 VDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGRC 187
+ + L+++ +KGRS + + SA LYI CRQ GVPRT KE+ VS+ K+I R
Sbjct: 126 KEATSVLYRKAMKRGLIKGRSIEELVSAMLYITCRQYGVPRTLKEMAEVSRSPLKKIRRA 185
Query: 188 FKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVA 247
+ +L+ LE + ++ RFCS L L +++ A I + + G PI A
Sbjct: 186 YIFLLRRLEIKLAPADPARYIPRFCSKLGLSAEIREKAMVILQDDDGTGMAKGWGPIGTA 245
Query: 248 AAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
AAAIY+A+ S + R++KEI +AG E+TIR YK
Sbjct: 246 AAAIYIATVLSGEYRTEKEIAKVAGTTEITIRDRYK 281
>gi|389846162|ref|YP_006348401.1| transcription initiation factor TFB [Haloferax mediterranei ATCC
33500]
gi|448616218|ref|ZP_21664928.1| transcription initiation factor TFB [Haloferax mediterranei ATCC
33500]
gi|388243468|gb|AFK18414.1| transcription initiation factor TFB [Haloferax mediterranei ATCC
33500]
gi|445750873|gb|EMA02310.1| transcription initiation factor TFB [Haloferax mediterranei ATCC
33500]
Length = 326
Score = 137 bits (346), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 86/254 (33%), Positives = 140/254 (55%), Gaps = 11/254 (4%)
Query: 40 DVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLSTMIGPGRGDASFDGFG--------- 90
D G EWR F N SRVG P ++ L+T I DA
Sbjct: 64 DPGPEWRAF-NHSERQSKSRVGAPTTQTMHDKGLTTTIDWKDKDAYGRSISSKKRSQMHR 122
Query: 91 MSKYQNR-RTMNSSDRALLNAIREINSMADRINLTKTIVDRANNLFKQVHDGKNLKGRSN 149
+ K+Q R RT ++ +R L A+ EI+ MA + + +++ + A+ ++++ + ++GRS
Sbjct: 123 LRKWQERIRTKDAGERNLQFALSEIDRMASALGVPRSVREVASVIYRRALNEDLIRGRSI 182
Query: 150 DAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGRCFKLILKALETSVDLITTGDFMS 209
+ +A++ LY ACR+EG+PR+ +EI VS++ +KEIGR ++ I + L + + ++
Sbjct: 183 EGVATSALYAACRKEGIPRSLEEISEVSRVERKEIGRTYRYISQELGLEMRPVDPKKYVP 242
Query: 210 RFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGD 269
RF S L L VQ A I E ++ G+SP AAAAIY AS ++K++Q+E+ +
Sbjct: 243 RFSSELDLSKEVQSKANEIIETTAEQGLLSGKSPTGFAAAAIYAASLLCNEKKTQREVAE 302
Query: 270 IAGVAEVTIRQSYK 283
+A V EVTIR Y+
Sbjct: 303 VAQVTEVTIRNRYQ 316
>gi|448324011|ref|ZP_21513453.1| transcription initiation factor IIB [Natronobacterium gregoryi SP2]
gi|445619909|gb|ELY73423.1| transcription initiation factor IIB [Natronobacterium gregoryi SP2]
Length = 323
Score = 137 bits (346), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 87/278 (31%), Positives = 146/278 (52%), Gaps = 11/278 (3%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLST 75
++ D G+++C ECGLV+ + ID G EWR F N + + SRVG P ++ L+T
Sbjct: 35 IVHDPDRGERVCDECGLVLTEDPIDYGPEWRAF-NAQEHDELSRVGAPLTQSMHDRGLTT 93
Query: 76 MIGPGRGDASFDGFGMSK---------YQNR-RTMNSSDRALLNAIREINSMADRINLTK 125
I DA+ K +Q R RT N+ +R L A+ EI+ M + +
Sbjct: 94 TIDWRNKDANGRSMSAEKHGQIHRLRVWQERIRTKNAGERNLKYALSEIDRMVSALGVPN 153
Query: 126 TIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIG 185
+ + A+ ++++ ++GRS + +A++ LY ACR+E +PR+ +E+ AVS++ ++EIG
Sbjct: 154 PVKETASVIYRRALQQDLIRGRSIEGVATSALYTACRKEDIPRSLEEVTAVSRVDQREIG 213
Query: 186 RCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPIS 245
R ++ I L +++ F+ RFCS L + V+ A I + E + G+SP
Sbjct: 214 RTYRYIADELGINLEPTNPRQFVPRFCSELDVDKDVETKAIDIIDETTEKGLHSGKSPTG 273
Query: 246 VAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
AAAAIY A + Q+ + + A VT+R Y+
Sbjct: 274 FAAAAIYAAGLLCDETIPQRAVAETAQTTVVTVRNRYR 311
>gi|448292886|ref|ZP_21483207.1| transcription initiation factor TFB [Haloferax volcanii DS2]
gi|448543300|ref|ZP_21624869.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-646]
gi|448550186|ref|ZP_21628709.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-645]
gi|448559542|ref|ZP_21633616.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-644]
gi|448572791|ref|ZP_21640552.1| transcription initiation factor TFB [Haloferax lucentense DSM
14919]
gi|448597013|ref|ZP_21654151.1| transcription initiation factor TFB [Haloferax alexandrinus JCM
10717]
gi|445571861|gb|ELY26404.1| transcription initiation factor TFB [Haloferax volcanii DS2]
gi|445706844|gb|ELZ58717.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-646]
gi|445710932|gb|ELZ62727.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-644]
gi|445711961|gb|ELZ63747.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-645]
gi|445719563|gb|ELZ71242.1| transcription initiation factor TFB [Haloferax lucentense DSM
14919]
gi|445740894|gb|ELZ92399.1| transcription initiation factor TFB [Haloferax alexandrinus JCM
10717]
Length = 296
Score = 137 bits (346), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 86/254 (33%), Positives = 139/254 (54%), Gaps = 11/254 (4%)
Query: 40 DVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLSTMIGPGRGDASFDGFG--------- 90
D G EWR F N SRVG P ++ L+T I DA
Sbjct: 34 DPGPEWRAF-NHSERQSKSRVGAPTTQTMHDKGLTTTIDWKDKDAYGRSISSKKRSQMHR 92
Query: 91 MSKYQNR-RTMNSSDRALLNAIREINSMADRINLTKTIVDRANNLFKQVHDGKNLKGRSN 149
+ K+Q R RT ++ +R L A+ EI+ MA + + +++ + A+ ++++ ++GRS
Sbjct: 93 LRKWQERIRTKDAGERNLQFALSEIDRMASALGVPRSVREVASVIYRRALSEDLIRGRSI 152
Query: 150 DAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGRCFKLILKALETSVDLITTGDFMS 209
+ +A++ LY ACR+EG+PR+ +EI VS++ +KEIGR ++ I + L + + ++
Sbjct: 153 EGVATSALYAACRKEGIPRSLEEISEVSRVERKEIGRTYRYISQELGLEMRPVDPKKYVP 212
Query: 210 RFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGD 269
RF S L L VQ A I E ++ G+SP AAAAIY AS ++K++Q+E+ +
Sbjct: 213 RFSSELDLSKEVQSKANEIIETTAEQGLLSGKSPTGFAAAAIYAASLLCNEKKTQREVAE 272
Query: 270 IAGVAEVTIRQSYK 283
+A V EVTIR Y+
Sbjct: 273 VAQVTEVTIRNRYQ 286
>gi|429193443|ref|YP_007179121.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natronobacterium gregoryi SP2]
gi|429137661|gb|AFZ74672.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natronobacterium gregoryi SP2]
Length = 340
Score = 137 bits (346), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 87/278 (31%), Positives = 146/278 (52%), Gaps = 11/278 (3%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLST 75
++ D G+++C ECGLV+ + ID G EWR F N + + SRVG P ++ L+T
Sbjct: 52 IVHDPDRGERVCDECGLVLTEDPIDYGPEWRAF-NAQEHDELSRVGAPLTQSMHDRGLTT 110
Query: 76 MIGPGRGDASFDGFGMSK---------YQNR-RTMNSSDRALLNAIREINSMADRINLTK 125
I DA+ K +Q R RT N+ +R L A+ EI+ M + +
Sbjct: 111 TIDWRNKDANGRSMSAEKHGQIHRLRVWQERIRTKNAGERNLKYALSEIDRMVSALGVPN 170
Query: 126 TIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIG 185
+ + A+ ++++ ++GRS + +A++ LY ACR+E +PR+ +E+ AVS++ ++EIG
Sbjct: 171 PVKETASVIYRRALQQDLIRGRSIEGVATSALYTACRKEDIPRSLEEVTAVSRVDQREIG 230
Query: 186 RCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPIS 245
R ++ I L +++ F+ RFCS L + V+ A I + E + G+SP
Sbjct: 231 RTYRYIADELGINLEPTNPRQFVPRFCSELDVDKDVETKAIDIIDETTEKGLHSGKSPTG 290
Query: 246 VAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
AAAAIY A + Q+ + + A VT+R Y+
Sbjct: 291 FAAAAIYAAGLLCDETIPQRAVAETAQTTVVTVRNRYR 328
>gi|448582204|ref|ZP_21645708.1| transcription initiation factor TFB [Haloferax gibbonsii ATCC
33959]
gi|448604362|ref|ZP_21657614.1| transcription initiation factor TFB [Haloferax sulfurifontis ATCC
BAA-897]
gi|448624090|ref|ZP_21670163.1| transcription initiation factor TFB [Haloferax denitrificans ATCC
35960]
gi|445731852|gb|ELZ83435.1| transcription initiation factor TFB [Haloferax gibbonsii ATCC
33959]
gi|445744522|gb|ELZ95998.1| transcription initiation factor TFB [Haloferax sulfurifontis ATCC
BAA-897]
gi|445750057|gb|EMA01496.1| transcription initiation factor TFB [Haloferax denitrificans ATCC
35960]
Length = 296
Score = 137 bits (346), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 86/254 (33%), Positives = 139/254 (54%), Gaps = 11/254 (4%)
Query: 40 DVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLSTMIGPGRGDASFDGFG--------- 90
D G EWR F N SRVG P ++ L+T I DA
Sbjct: 34 DPGPEWRAF-NHSERQSKSRVGAPTTQTMHDKGLTTTIDWKDKDAYGRSISSKKRSQMHR 92
Query: 91 MSKYQNR-RTMNSSDRALLNAIREINSMADRINLTKTIVDRANNLFKQVHDGKNLKGRSN 149
+ K+Q R RT ++ +R L A+ EI+ MA + + +++ + A+ ++++ ++GRS
Sbjct: 93 LRKWQERIRTKDAGERNLQFALSEIDRMASALGVPRSVREVASVIYRRALSEDLIRGRSI 152
Query: 150 DAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGRCFKLILKALETSVDLITTGDFMS 209
+ +A++ LY ACR+EG+PR+ +EI VS++ +KEIGR ++ I + L + + ++
Sbjct: 153 EGVATSALYAACRKEGIPRSLEEISEVSRVERKEIGRTYRYISQELGLEMRPVDPKKYVP 212
Query: 210 RFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGD 269
RF S L L VQ A I E ++ G+SP AAAAIY AS ++K++Q+E+ +
Sbjct: 213 RFSSELDLSKEVQSKANEIIETTAEQGLLSGKSPTGFAAAAIYAASLLCNEKKTQREVAE 272
Query: 270 IAGVAEVTIRQSYK 283
+A V EVTIR Y+
Sbjct: 273 VAQVTEVTIRNRYQ 286
>gi|82617153|emb|CAI64060.1| probable transcription initiation factor IIB [uncultured archaeon]
gi|82617265|emb|CAI64171.1| probable transcription initiation factor IIB [uncultured archaeon]
Length = 306
Score = 137 bits (346), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 94/276 (34%), Positives = 148/276 (53%), Gaps = 9/276 (3%)
Query: 8 CYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPL 67
C E +I D R + C++CG+V+ + ++D+G EWR++ E++ R G P +
Sbjct: 15 CPECGSKNVITDSRHAELYCADCGVVIAENIVDLGPEWRSYDEEQAS-KRIRTGPPMSYR 73
Query: 68 LNGSDLSTMIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADRINLTKTI 127
++ L T PG + G+S ++SSD+ L A+ EI+ MA + L I
Sbjct: 74 IHDKGLGTPT-PGLPARTRRLRGIS-------IDSSDKTLAFALVEIDRMACALGLPNNI 125
Query: 128 VDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGRC 187
+ + L+++ +KGRS + + SA LYI CRQ GVPRT KE+ VS+ K+I R
Sbjct: 126 KEATSVLYRKAMKRGLIKGRSIEELVSAMLYITCRQYGVPRTLKEMAEVSRSPLKKIRRA 185
Query: 188 FKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVA 247
+ +L+ LE + ++ RFCS L L +++ A I + + G PI A
Sbjct: 186 YIFLLRRLEIKLAPADPARYIPRFCSKLGLSAEIREKAMVILQDDDGTGMAKGWGPIGTA 245
Query: 248 AAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
AAAIY+A+ S + R++KEI +AG E+TIR YK
Sbjct: 246 AAAIYIATVLSGEYRTEKEIAKVAGTTEITIRDRYK 281
>gi|268322998|emb|CBH36586.1| probable transcription initiation factor IIB [uncultured archaeon]
Length = 302
Score = 137 bits (346), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 94/276 (34%), Positives = 148/276 (53%), Gaps = 9/276 (3%)
Query: 8 CYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPL 67
C E +I D R + C++CG+V+ + ++D+G EWR++ E++ R G P +
Sbjct: 11 CPECGSKNVITDSRHAELYCADCGVVIAENIVDLGPEWRSYDEEQAS-KRIRTGPPMSYR 69
Query: 68 LNGSDLSTMIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADRINLTKTI 127
++ L T PG + G+S ++SSD+ L A+ EI+ MA + L I
Sbjct: 70 IHDKGLGTPT-PGLPARTRRLRGIS-------IDSSDKTLAFALVEIDRMACALGLPNNI 121
Query: 128 VDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGRC 187
+ + L+++ +KGRS + + SA LYI CRQ GVPRT KE+ VS+ K+I R
Sbjct: 122 KEATSVLYRKAMKRGLIKGRSIEELVSAMLYITCRQYGVPRTLKEMAEVSRSPLKKIRRA 181
Query: 188 FKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVA 247
+ +L+ LE + ++ RFCS L L +++ A I + + G PI A
Sbjct: 182 YIFLLRRLEIKLAPADPARYIPRFCSKLGLSAEIREKAMVILQDDDGTGMAKGWGPIGTA 241
Query: 248 AAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
AAAIY+A+ S + R++KEI +AG E+TIR YK
Sbjct: 242 AAAIYIATVLSGEYRTEKEIAKVAGTTEITIRDRYK 277
>gi|25396143|pir||C88922 protein W03F9.5 [imported] - Caenorhabditis elegans
Length = 148
Score = 137 bits (346), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 68/122 (55%), Positives = 89/122 (72%), Gaps = 2/122 (1%)
Query: 6 VCCYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPEN 65
V C HPD LIED+RAGD +C CGLVVGDR++DVG+EWR+FSNE+SG DPSRVG PEN
Sbjct: 5 VQCPIHPDVHLIEDHRAGDLVCPACGLVVGDRLVDVGTEWRSFSNERSGNDPSRVGAPEN 64
Query: 66 PLLNGSDLSTMIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADRINLTK 125
PLL+G DLST I G G + D ++ Q R++MN++DR + A+ I M++RI+L +
Sbjct: 65 PLLSGGDLSTTIAVGFGGSDSDN-SLANAQ-RKSMNNTDRQMTAAMSLIREMSERIHLPR 122
Query: 126 TI 127
I
Sbjct: 123 NI 124
>gi|329764985|ref|ZP_08256572.1| Transcription initiation factor TFIIIB, Brf1 subunit/Transcription
initiation factor TFIIB [Candidatus Nitrosoarchaeum
limnia SFB1]
gi|393795852|ref|ZP_10379216.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosoarchaeum limnia BG20]
gi|329138522|gb|EGG42771.1| Transcription initiation factor TFIIIB, Brf1 subunit/Transcription
initiation factor TFIIB [Candidatus Nitrosoarchaeum
limnia SFB1]
Length = 305
Score = 137 bits (345), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 81/278 (29%), Positives = 155/278 (55%), Gaps = 11/278 (3%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLST 75
L+ D G++ C +CG V+ ++ + G EWR+F+ ++ G + +R G P + ++ LST
Sbjct: 19 LLTDDVTGERFCGKCGYVISEKSQESGPEWRSFTQDEHG-NKARAGAPTSLTMHDMGLST 77
Query: 76 MIGPGRGDAS---FDGFGMSKYQNRRTMNSS-------DRALLNAIREINSMADRINLTK 125
+I P DAS S + RT +S DR L A+ E+N + D+++L+
Sbjct: 78 IINPMNKDASGKPLTASMKSTIERLRTWDSRSQVHESVDRNLRQALSELNRLKDKLSLSD 137
Query: 126 TIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIG 185
++++A ++++ + K ++GRS A+ ++ LY ACR PRT ++ + + KK+I
Sbjct: 138 AVIEKAAYIYRKAIEKKLVRGRSISAMIASALYAACRDTETPRTLNDVGEAANLKKKDIA 197
Query: 186 RCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPIS 245
RC++L+ + LE + ++ ++R S + + ++ A + + + E + G+ P+
Sbjct: 198 RCYRLLHRELELKMPVVDPIQCLARIASRIGITEKTKRYAAKVLKISQEHEESAGKDPMG 257
Query: 246 VAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
+AAAA+Y+A + + +Q++I + A V EVTIR YK
Sbjct: 258 LAAAALYLACVKNGEDITQRDIAEAASVTEVTIRNRYK 295
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 49/87 (56%)
Query: 208 MSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEI 267
++R LSL + V + A +I RKA+E +V GRS ++ A+A+Y A + + R+ ++
Sbjct: 126 LNRLKDKLSLSDAVIEKAAYIYRKAIEKKLVRGRSISAMIASALYAACRDTETPRTLNDV 185
Query: 268 GDIAGVAEVTIRQSYKLMYPHASKLFP 294
G+ A + + I + Y+L++ P
Sbjct: 186 GEAANLKKKDIARCYRLLHRELELKMP 212
>gi|292654896|ref|YP_003534793.1| transcription initiation factor TFB [Haloferax volcanii DS2]
gi|291372806|gb|ADE05033.1| transcription initiation factor TFB [Haloferax volcanii DS2]
Length = 326
Score = 137 bits (345), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 86/254 (33%), Positives = 139/254 (54%), Gaps = 11/254 (4%)
Query: 40 DVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLSTMIGPGRGDASFDGFG--------- 90
D G EWR F N SRVG P ++ L+T I DA
Sbjct: 64 DPGPEWRAF-NHSERQSKSRVGAPTTQTMHDKGLTTTIDWKDKDAYGRSISSKKRSQMHR 122
Query: 91 MSKYQNR-RTMNSSDRALLNAIREINSMADRINLTKTIVDRANNLFKQVHDGKNLKGRSN 149
+ K+Q R RT ++ +R L A+ EI+ MA + + +++ + A+ ++++ ++GRS
Sbjct: 123 LRKWQERIRTKDAGERNLQFALSEIDRMASALGVPRSVREVASVIYRRALSEDLIRGRSI 182
Query: 150 DAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGRCFKLILKALETSVDLITTGDFMS 209
+ +A++ LY ACR+EG+PR+ +EI VS++ +KEIGR ++ I + L + + ++
Sbjct: 183 EGVATSALYAACRKEGIPRSLEEISEVSRVERKEIGRTYRYISQELGLEMRPVDPKKYVP 242
Query: 210 RFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGD 269
RF S L L VQ A I E ++ G+SP AAAAIY AS ++K++Q+E+ +
Sbjct: 243 RFSSELDLSKEVQSKANEIIETTAEQGLLSGKSPTGFAAAAIYAASLLCNEKKTQREVAE 302
Query: 270 IAGVAEVTIRQSYK 283
+A V EVTIR Y+
Sbjct: 303 VAQVTEVTIRNRYQ 316
>gi|110667584|ref|YP_657395.1| transcription initiation factor TFB [Haloquadratum walsbyi DSM
16790]
gi|385803024|ref|YP_005839424.1| transcription initiation factor TFB [Haloquadratum walsbyi C23]
gi|109625331|emb|CAJ51753.1| transcription initiation factor TFB [Haloquadratum walsbyi DSM
16790]
gi|339728516|emb|CCC39669.1| transcription initiation factor TFB [Haloquadratum walsbyi C23]
Length = 369
Score = 137 bits (344), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 93/290 (32%), Positives = 157/290 (54%), Gaps = 11/290 (3%)
Query: 6 VCCYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPEN 65
V C E LI D G+ +C++CGLVV + ID G EWR F + + SRVG P
Sbjct: 63 VHCPECESTELITDDERGETVCADCGLVVDEDSIDRGPEWRAFDSAERD-QKSRVGAPTT 121
Query: 66 PLLNGSDLSTMIGPGRGDA---SFDGFGMSKYQNRRTMN-------SSDRALLNAIREIN 115
L++ LST IG DA S K Q RT N S +R L A+ EI+
Sbjct: 122 KLMHDKGLSTNIGWQDKDAYGNSLSSTQRQKMQRLRTWNERFRTRDSKERNLKQALGEID 181
Query: 116 SMADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICA 175
MA + L +++ + A+ ++++ D L GRS + I++A L+ A R VPR+ E+
Sbjct: 182 RMASALGLPESVRETASVIYRRALDEDLLPGRSIEGISTAALHAAARMAQVPRSIDEVAR 241
Query: 176 VSKISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVEL 235
VS++ + E R ++ I++ L + +++ RF S+L +P ++ A + A
Sbjct: 242 VSRVDEDEFERAYRYIVRELSLEIQPADPAEYVPRFASDLEVPKETERTARELLESAKRQ 301
Query: 236 DIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLM 285
++ G+SP+ +AAAA+Y ++Q ++D+ +Q ++ ++ ++EVTIR Y+ +
Sbjct: 302 NVHSGKSPVGLAAAALYASAQLTNDELTQADVSEVTDISEVTIRNRYQEL 351
>gi|448616659|ref|ZP_21665369.1| transcription initiation factor TFB [Haloferax mediterranei ATCC
33500]
gi|445751314|gb|EMA02751.1| transcription initiation factor TFB [Haloferax mediterranei ATCC
33500]
Length = 288
Score = 136 bits (343), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 84/267 (31%), Positives = 142/267 (53%), Gaps = 10/267 (3%)
Query: 22 AGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLSTMIG--- 78
AG+ +C++CGLVV + ID G EWR+F+++ +P+R G P + LST IG
Sbjct: 21 AGETVCTDCGLVVSEYRIDHGPEWRSFADDDR--NPARTGAPLTRSRHDRGLSTEIGRST 78
Query: 79 --PGRGDASFDGFGMSKYQNR-RTMNSSDRALLNAIREINSMADRINLTKTIVDRANNLF 135
GR F + + NR R + +R + A EI + + L I D+A +LF
Sbjct: 79 RIKGRKRRKF--ARLRRQHNRARISSKRERNQVYAFTEIRRVTGALGLPNHIRDQACSLF 136
Query: 136 KQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGRCFKLILKAL 195
+ + L+GRS + A+AC+Y ACR G+ R+ +E+C VSK ++ E ++ + + L
Sbjct: 137 ESAQNEDLLRGRSLEGFAAACVYAACRVAGISRSVEEVCDVSKSTESEHQAAYRALNRDL 196
Query: 196 ETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMAS 255
V +++ RF + L L ++ A +A + +V G++P VAAA +Y A+
Sbjct: 197 GLPVAPADPTEYLPRFATKLDLDRDTERRAREYVAEARDDGLVAGKNPCGVAAACLYTAA 256
Query: 256 QASSDKRSQKEIGDIAGVAEVTIRQSY 282
+ + +Q + D+A V VT+R++Y
Sbjct: 257 RDLGEDCTQSDAADVADVTPVTLRKTY 283
Score = 39.3 bits (90), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 39/78 (50%)
Query: 208 MSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEI 267
+ R L LPN ++ A + A D++ GRS AAA +Y A + + RS +E+
Sbjct: 115 IRRVTGALGLPNHIRDQACSLFESAQNEDLLRGRSLEGFAAACVYAACRVAGISRSVEEV 174
Query: 268 GDIAGVAEVTIRQSYKLM 285
D++ E + +Y+ +
Sbjct: 175 CDVSKSTESEHQAAYRAL 192
>gi|389845720|ref|YP_006347959.1| transcription initiation factor TFB [Haloferax mediterranei ATCC
33500]
gi|388243026|gb|AFK17972.1| transcription initiation factor TFB [Haloferax mediterranei ATCC
33500]
Length = 289
Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 84/267 (31%), Positives = 142/267 (53%), Gaps = 10/267 (3%)
Query: 22 AGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLSTMIG--- 78
AG+ +C++CGLVV + ID G EWR+F+++ +P+R G P + LST IG
Sbjct: 22 AGETVCTDCGLVVSEYRIDHGPEWRSFADDDR--NPARTGAPLTRSRHDRGLSTEIGRST 79
Query: 79 --PGRGDASFDGFGMSKYQNR-RTMNSSDRALLNAIREINSMADRINLTKTIVDRANNLF 135
GR F + + NR R + +R + A EI + + L I D+A +LF
Sbjct: 80 RIKGRKRRKF--ARLRRQHNRARISSKRERNQVYAFTEIRRVTGALGLPNHIRDQACSLF 137
Query: 136 KQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGRCFKLILKAL 195
+ + L+GRS + A+AC+Y ACR G+ R+ +E+C VSK ++ E ++ + + L
Sbjct: 138 ESAQNEDLLRGRSLEGFAAACVYAACRVAGISRSVEEVCDVSKSTESEHQAAYRALNRDL 197
Query: 196 ETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMAS 255
V +++ RF + L L ++ A +A + +V G++P VAAA +Y A+
Sbjct: 198 GLPVAPADPTEYLPRFATKLDLDRDTERRAREYVAEARDDGLVAGKNPCGVAAACLYTAA 257
Query: 256 QASSDKRSQKEIGDIAGVAEVTIRQSY 282
+ + +Q + D+A V VT+R++Y
Sbjct: 258 RDLGEDCTQSDAADVADVTPVTLRKTY 284
Score = 39.3 bits (90), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 39/78 (50%)
Query: 208 MSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEI 267
+ R L LPN ++ A + A D++ GRS AAA +Y A + + RS +E+
Sbjct: 116 IRRVTGALGLPNHIRDQACSLFESAQNEDLLRGRSLEGFAAACVYAACRVAGISRSVEEV 175
Query: 268 GDIAGVAEVTIRQSYKLM 285
D++ E + +Y+ +
Sbjct: 176 CDVSKSTESEHQAAYRAL 193
>gi|344210357|ref|YP_004794677.1| transcription initiation factor IIB [Haloarcula hispanica ATCC
33960]
gi|343781712|gb|AEM55689.1| transcription initiation factor IIB [Haloarcula hispanica ATCC
33960]
Length = 286
Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 87/265 (32%), Positives = 138/265 (52%), Gaps = 10/265 (3%)
Query: 24 DQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLSTMIG----- 78
+ +C CGLVVG+ ID G EWR+F ++ + D +R G P + LST IG
Sbjct: 21 ESVCGSCGLVVGEDAIDPGPEWRSFDDDDT--DRARTGAPLTRSRHDRGLSTKIGRSTRL 78
Query: 79 PGRGDASFDGFGMSKYQNRRTMNSS-DRALLNAIREINSMADRINLTKTIVDRANNLFKQ 137
GR F + + NR ++S +R + A EI + ++L+ I DRA LF+
Sbjct: 79 KGRKRRQF--ARLRREHNRAQISSKRERNKVYAFTEIRRIISSMSLSDAIRDRACVLFES 136
Query: 138 VHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGRCFKLILKALET 197
+ L+GR+ + A+A +Y CR EGV RT E+C V+K ++ E+ + + + L
Sbjct: 137 AQNEDLLQGRTLEGFAAAAIYATCRTEGVARTVDELCTVAKATQSELRAAYDALNRELGL 196
Query: 198 SVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQA 257
I +++ RF + L LP V++ A + +A + +V GR+P VAAA +Y A+Q
Sbjct: 197 PTGPIDPREYVPRFATTLDLPTAVRQRAEQLVDEAQDRGLVSGRNPAGVAAACLYTAAQE 256
Query: 258 SSDKRSQKEIGDIAGVAEVTIRQSY 282
+Q E + A V VT+R +Y
Sbjct: 257 RDVALTQAEAAETADVTPVTLRGTY 281
>gi|237838491|ref|XP_002368543.1| transcription initiation factor IIB, putative [Toxoplasma gondii
ME49]
gi|211966207|gb|EEB01403.1| transcription initiation factor IIB, putative [Toxoplasma gondii
ME49]
gi|221484187|gb|EEE22483.1| transcription initiation factor IIB, putative [Toxoplasma gondii
GT1]
gi|221505834|gb|EEE31479.1| transcription initiation factor IIB, putative [Toxoplasma gondii
VEG]
Length = 464
Score = 136 bits (342), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 105/331 (31%), Positives = 154/331 (46%), Gaps = 40/331 (12%)
Query: 5 KVCCYEHPD----APLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNE-----KSGV 55
K C Y P ++ D +GDQ+C ECGL+V ++V+ EWR FS E + G
Sbjct: 109 KTCPYCGPARNGAQTIVFDSSSGDQLCRECGLIVEEKVLSEEQEWRNFSAEAASSSRGGA 168
Query: 56 DPSRVGGPENPLLNGSDLSTMI------GPGRGDASFDGFGMSKYQNRRT------MNSS 103
D +RVG + L + T + GP G A++ + + T + S
Sbjct: 169 DRNRVGDALDAWLEDGGIGTTMLVASSGGPLAGKAAWSAKRLQQLHEAATSGLGSGVGSG 228
Query: 104 DRALLNAIREINSMADRINLTKTIVDRANNLFKQV-HDGKNLKGRSNDAIASACLYIACR 162
DR L A I + + L +++RA + K + DG L+ RSN A Y+ACR
Sbjct: 229 DRQLKVAFNYIRLIGEAFALRDNVLERAKEITKDLMQDGVQLRTRSNTTTMLAITYLACR 288
Query: 163 QEGVPRTFKEICAVSK-ISKKEIGRCFKLILKALE-----TSVDLITTGDFMSRFCSNLS 216
+ GV RT KE+ + IS+KE+G+ I K L S + T + R+CS L
Sbjct: 289 EAGVTRTVKELVVYDRAISEKELGKAINRIKKLLPQRGGVNSAESAT--QLLPRYCSRLQ 346
Query: 217 LPNMVQKAATHIARKAVELDI-----VPGRSPISVAAAAIYMA-----SQASSDKRSQKE 266
L V A H+A++A ++ I V R P SVAAAAI++ S + + E
Sbjct: 347 LSMHVADVAEHVAKRATQVIISSHRHVLARRPNSVAAAAIWLVVKLLNSSTNPNLPKASE 406
Query: 267 IGDIAGVAEVTIRQSYKLMYPHASKLFPQDF 297
I + G E T+R YK M A L P++F
Sbjct: 407 IASVTGAGEHTLRSIYKDMLDVAEHLLPREF 437
>gi|448683556|ref|ZP_21692273.1| transcription initiation factor IIB [Haloarcula japonica DSM 6131]
gi|445783695|gb|EMA34520.1| transcription initiation factor IIB [Haloarcula japonica DSM 6131]
Length = 286
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 88/265 (33%), Positives = 139/265 (52%), Gaps = 10/265 (3%)
Query: 24 DQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLSTMIG----- 78
+ +CS CGLVVG+ ID G EWR+F ++ + D +R G P + LST IG
Sbjct: 21 ESVCSSCGLVVGEDAIDPGPEWRSFDDDDT--DRARTGAPLTRSRHDRGLSTKIGRSTRL 78
Query: 79 PGRGDASFDGFGMSKYQNRRTMNSS-DRALLNAIREINSMADRINLTKTIVDRANNLFKQ 137
GR F + + NR ++S +R + A EI + + L+ I DRA LF+
Sbjct: 79 KGRKRRQF--ARLRREHNRAQISSKRERNKVYAFTEIRRIISSMALSDAIRDRACVLFES 136
Query: 138 VHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGRCFKLILKALET 197
+ L+GR+ + A+A +Y CR EGV RT E+C V+K ++ E+ + + + L
Sbjct: 137 AQNENLLQGRTLEGFAAAAIYATCRTEGVARTVDELCTVAKATQAELRAAYDALNRELGL 196
Query: 198 SVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQA 257
I +++ RF + L LP V++ A + +A + +V GR+P VAAA +Y A+Q
Sbjct: 197 PTGPIDPREYVPRFATALDLPTAVRQRAERLVDEAQDRGLVSGRNPAGVAAACLYTAAQE 256
Query: 258 SSDKRSQKEIGDIAGVAEVTIRQSY 282
+ +Q E + A V VT+R +Y
Sbjct: 257 QNVALTQVEAAETADVTPVTLRGTY 281
>gi|448306378|ref|ZP_21496284.1| transcription initiation factor TFB [Natronorubrum bangense JCM
10635]
gi|445598233|gb|ELY52297.1| transcription initiation factor TFB [Natronorubrum bangense JCM
10635]
Length = 332
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 82/276 (29%), Positives = 143/276 (51%), Gaps = 19/276 (6%)
Query: 27 CSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLSTMIGPGRGDASF 86
C +CGLVV + ID G EWR F N + SRVG P +L+ LST I +
Sbjct: 51 CEDCGLVVDEDRIDHGPEWRAF-NATEKNEKSRVGAPTTNMLHDRGLSTTIDW----QNK 105
Query: 87 DGFG-------------MSKYQNR-RTMNSSDRALLNAIREINSMADRINLTKTIVDRAN 132
DG+G + + R RT ++++R L +A+ EI+ M + + ++ A+
Sbjct: 106 DGYGSTLSARKRQQFQRLRTWDERFRTRDATERNLKHALGEIDRMGSALGIPDATLETAS 165
Query: 133 NLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGRCFKLIL 192
++++ + L GRS + +A+A L A RQ GVPR+ E+ VS+I E R ++ ++
Sbjct: 166 VIYRRALEENLLPGRSIEGMATAALNAAVRQTGVPRSIDELATVSRIDYLEAARAYRYLV 225
Query: 193 KALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIY 252
+ LE + +++ R+ S L + ++ A + +E + G+ P+ +AAAAIY
Sbjct: 226 RELELPMAPPDPLEYLPRYASALEITAETERRAHDLLEGGMEAGLHSGKHPVGLAAAAIY 285
Query: 253 MASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPH 288
S+ + + +Q ++ D V++VTIR Y+ + H
Sbjct: 286 AGSRLTGETLTQDDVSDAIDVSKVTIRNRYQELLEH 321
>gi|448579035|ref|ZP_21644351.1| transcription initiation factor TFB [Haloferax larsenii JCM 13917]
gi|445724388|gb|ELZ76021.1| transcription initiation factor TFB [Haloferax larsenii JCM 13917]
Length = 288
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 85/267 (31%), Positives = 140/267 (52%), Gaps = 10/267 (3%)
Query: 22 AGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLSTMIG--- 78
AG+ +C +CGLVV + ID G EWR+F+++ +P+R G P + LST IG
Sbjct: 21 AGETVCGDCGLVVSEYRIDHGPEWRSFADDDR--NPARTGAPLTRSRHDRGLSTEIGRST 78
Query: 79 --PGRGDASFDGFGMSKYQNR-RTMNSSDRALLNAIREINSMADRINLTKTIVDRANNLF 135
GR F + + NR R + +R + A EI + ++L I ++A LF
Sbjct: 79 RIKGRKRRQF--ARLRRQHNRARISSKRERNQVYAFTEIRRLTSALSLPNHIREQACALF 136
Query: 136 KQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGRCFKLILKAL 195
+ + L+GRS + A+AC+Y ACR G+ R+ +E+C V+K ++ E ++ + + L
Sbjct: 137 ESAQNEDLLRGRSLEGFAAACVYAACRVAGIARSVEEVCDVAKATESEHHAAYRALNRDL 196
Query: 196 ETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMAS 255
V +++ RF + L L V++ A A E IV G++P VAAA +Y A+
Sbjct: 197 GLPVAPTDPTEYIPRFATKLDLDRDVERRAREYVADAREDGIVAGKNPCGVAAACLYTAA 256
Query: 256 QASSDKRSQKEIGDIAGVAEVTIRQSY 282
+ +Q + D+A V VT+R++Y
Sbjct: 257 RDVGADCTQADAADVADVTPVTLRKTY 283
Score = 44.7 bits (104), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 41/78 (52%)
Query: 208 MSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEI 267
+ R S LSLPN +++ A + A D++ GRS AAA +Y A + + RS +E+
Sbjct: 115 IRRLTSALSLPNHIREQACALFESAQNEDLLRGRSLEGFAAACVYAACRVAGIARSVEEV 174
Query: 268 GDIAGVAEVTIRQSYKLM 285
D+A E +Y+ +
Sbjct: 175 CDVAKATESEHHAAYRAL 192
>gi|448445090|ref|ZP_21590145.1| transcription factor TFIIB cyclin-related protein [Halorubrum
saccharovorum DSM 1137]
gi|445685396|gb|ELZ37750.1| transcription factor TFIIB cyclin-related protein [Halorubrum
saccharovorum DSM 1137]
Length = 348
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 85/250 (34%), Positives = 139/250 (55%), Gaps = 11/250 (4%)
Query: 40 DVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLSTMIGPGRGDASFDGFG--------- 90
D G EWR F N + SRVG P ++ L+T I DA
Sbjct: 57 DPGPEWRAF-NHSERQEKSRVGAPTTKTMHDKGLTTTIDWKDKDAYGRSISSKKRSQMHR 115
Query: 91 MSKYQNR-RTMNSSDRALLNAIREINSMADRINLTKTIVDRANNLFKQVHDGKNLKGRSN 149
+ K+Q R RT ++ +R L A+ EI+ MA + + +++ + A+ ++++ + ++GRS
Sbjct: 116 LRKWQERIRTKDAGERNLQFALSEIDRMASALGVPRSVREVASVIYRRALNEDLIRGRSI 175
Query: 150 DAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGRCFKLILKALETSVDLITTGDFMS 209
+ +++A LY ACR+EG+PR+ +EI VS++ +KEIGR ++ I + L + + ++
Sbjct: 176 EGVSTAALYAACRKEGIPRSLEEISDVSRVDRKEIGRTYRYISQELGLEMRPVDPKKYVP 235
Query: 210 RFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGD 269
RF S L L VQ A I + ++ G+SP AAAAIY AS ++K++Q+E+ D
Sbjct: 236 RFSSELELSEEVQSKANEIIETTADQGLLSGKSPTGYAAAAIYAASLLCNEKKTQREVAD 295
Query: 270 IAGVAEVTIR 279
+A V EVTIR
Sbjct: 296 VAQVTEVTIR 305
Score = 46.6 bits (109), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 45/78 (57%)
Query: 208 MSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEI 267
+ R S L +P V++ A+ I R+A+ D++ GRS V+ AA+Y A + RS +EI
Sbjct: 140 IDRMASALGVPRSVREVASVIYRRALNEDLIRGRSIEGVSTAALYAACRKEGIPRSLEEI 199
Query: 268 GDIAGVAEVTIRQSYKLM 285
D++ V I ++Y+ +
Sbjct: 200 SDVSRVDRKEIGRTYRYI 217
>gi|448434357|ref|ZP_21586167.1| transcription factor TFIIB cyclin-related protein [Halorubrum
tebenquichense DSM 14210]
gi|445685273|gb|ELZ37628.1| transcription factor TFIIB cyclin-related protein [Halorubrum
tebenquichense DSM 14210]
Length = 333
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 85/263 (32%), Positives = 137/263 (52%), Gaps = 6/263 (2%)
Query: 24 DQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLSTMIGPG--- 80
+++C +CGLVV ID G EWR+F ++ + +P R G P + LST IG
Sbjct: 67 ERVCGDCGLVVEADRIDHGPEWRSFDDDDT--NPKRTGAPLTRSRHDRGLSTEIGRSTKV 124
Query: 81 RGDASFDGFGMSKYQNRRTMNSS-DRALLNAIREINSMADRINLTKTIVDRANNLFKQVH 139
+G M NR +++ DR + A EI + + L ++ D A +LF
Sbjct: 125 KGRKRRRLARMRTQHNRAQISTKRDRNKVYAYTEIRRLTGVLELPDSVRDTACSLFDSAQ 184
Query: 140 DGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGRCFKLILKALETSV 199
+ L+GRS + A+AC+Y+ACR V RT E+C +K S+ E F + + L +
Sbjct: 185 EESLLRGRSLEGFAAACVYVACRTADVARTVGEVCDEAKASEDEHQAAFDAMNRELGLPI 244
Query: 200 DLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASS 259
+++ RF S+L V++ A +A +AVE I GR+P+ VAAA +Y A++
Sbjct: 245 APAGPSEYLPRFASDLGCDPAVERRAGELADRAVEEGIANGRNPVGVAAACLYTAARELD 304
Query: 260 DKRSQKEIGDIAGVAEVTIRQSY 282
+ +Q+E +A V VT+R++Y
Sbjct: 305 AECTQQEAAAVADVTPVTVRRTY 327
>gi|269986930|gb|EEZ93206.1| transcription factor TFIIB cyclin-related protein [Candidatus
Parvarchaeum acidiphilum ARMAN-4]
Length = 307
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 73/277 (26%), Positives = 144/277 (51%), Gaps = 8/277 (2%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLST 75
++ D G+ +C CG V+ ID G EWR+F +E+ R+G P + ST
Sbjct: 20 VMYDKTTGELVCQNCGYVIESDTIDYGREWRSFEDERDE-GKGRMGSPLSYAKYDKGTST 78
Query: 76 MIGPGRGDASFDG------FGMSKYQNRRTMNSSDRALLNAIREINSMADRINLTKTIVD 129
+IG + + K+Q R + +R L A+ E+ ++R++++ I +
Sbjct: 79 VIGKASESIKLSNANRRTFYKLRKWQPR-ISTAYERNLKFALTELRHASNRLHVSNIIQE 137
Query: 130 RANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGRCFK 189
A ++++ + ++GRS +++ + LY A R+ P T EI ++ +KE+G+ ++
Sbjct: 138 EAAKMYREAITRRLVRGRSMESVIAGALYAAARKHNRPITLDEISETFEVERKEVGKAYR 197
Query: 190 LILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAA 249
L+ + L + + D++ +F S L + N A + ++A + + G+ P+ +AAA
Sbjct: 198 LLCRELGIKILPSSPSDYIYKFASELGVSNKTVSDAVKLLKEAEDKGLTSGKGPMGIAAA 257
Query: 250 AIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMY 286
+Y+A+ + +K++Q++ AG+ EVTIR YK +Y
Sbjct: 258 VLYVATLINKEKKTQRDAAKAAGITEVTIRNRYKELY 294
>gi|448606561|ref|ZP_21658987.1| transcription initiation factor TFB [Haloferax sulfurifontis ATCC
BAA-897]
gi|445738769|gb|ELZ90281.1| transcription initiation factor TFB [Haloferax sulfurifontis ATCC
BAA-897]
Length = 288
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 84/267 (31%), Positives = 140/267 (52%), Gaps = 6/267 (2%)
Query: 20 YRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLSTMIGP 79
+ AG+ +C++CGLVV + ID G EWR+F+++ +P+R G P + LST IG
Sbjct: 19 FEAGETVCTDCGLVVSEYRIDHGPEWRSFADDDR--NPARTGAPLTRSRHDRGLSTEIGR 76
Query: 80 G---RGDASFDGFGMSKYQNR-RTMNSSDRALLNAIREINSMADRINLTKTIVDRANNLF 135
+G M + NR R +R + A EI + ++L I D+A +LF
Sbjct: 77 STRIKGRKRRQLARMRRQHNRARISTKRERNQVYAFTEIRRVTSALSLPNHIRDQACSLF 136
Query: 136 KQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGRCFKLILKAL 195
+ + L+GRS + A+AC+Y ACR GV R+ +E+C VSK ++ E + + + L
Sbjct: 137 ESAQNEDLLRGRSLEGFAAACVYAACRVAGVSRSVEEVCDVSKSTEAEHQAAYGALNRDL 196
Query: 196 ETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMAS 255
V +++ RF + L L + ++ A A + +V G++P VAAA +Y A+
Sbjct: 197 GLPVAPADPTEYLPRFATKLDLDSDTERRAREYVADARDEGLVGGKNPCGVAAACLYTAA 256
Query: 256 QASSDKRSQKEIGDIAGVAEVTIRQSY 282
+ +Q E ++A V VT+R++Y
Sbjct: 257 CDRGEDCTQAEAAEVADVTPVTLRKTY 283
>gi|448305351|ref|ZP_21495283.1| transcription initiation factor TFB [Natronorubrum sulfidifaciens
JCM 14089]
gi|445589198|gb|ELY43434.1| transcription initiation factor TFB [Natronorubrum sulfidifaciens
JCM 14089]
Length = 334
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 82/276 (29%), Positives = 143/276 (51%), Gaps = 19/276 (6%)
Query: 27 CSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLSTMIGPGRGDASF 86
C +CGLVV + ID G EWR F N + SRVG P +L+ LST I +
Sbjct: 53 CEDCGLVVDEDRIDHGPEWRAF-NATEKNEKSRVGAPTTNMLHDRGLSTTIDW----QNK 107
Query: 87 DGFG-------------MSKYQNR-RTMNSSDRALLNAIREINSMADRINLTKTIVDRAN 132
DG+G + + R RT ++++R L +A+ EI+ M + + ++ A+
Sbjct: 108 DGYGSTLSARKRQQFQRLRTWDERFRTRDATERNLKHALGEIDRMGSALGIPDATLETAS 167
Query: 133 NLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGRCFKLIL 192
++++ + L GRS + +A+A L A RQ GVPR+ E+ VS+I E R ++ ++
Sbjct: 168 VIYRRALEENLLPGRSIEGMATAALNAAVRQTGVPRSIDELATVSRIDYLEAARAYRYLV 227
Query: 193 KALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIY 252
+ LE + +++ R+ S L + ++ A + +E + G+ P+ +AAAAIY
Sbjct: 228 RELELPMAPPDPLEYLPRYASALEITAETERRAHDLLEGGMEAGLHSGKHPVGLAAAAIY 287
Query: 253 MASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPH 288
S+ + + +Q ++ D V++VTIR Y+ + H
Sbjct: 288 AGSRLTGEALTQADVSDAIDVSKVTIRNRYQELLEH 323
>gi|261402160|ref|YP_003246384.1| Transcription factor TFIIB cyclin-releated protein
[Methanocaldococcus vulcanius M7]
gi|261369153|gb|ACX71902.1| Transcription factor TFIIB cyclin-releated protein
[Methanocaldococcus vulcanius M7]
Length = 666
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 69/201 (34%), Positives = 118/201 (58%), Gaps = 1/201 (0%)
Query: 89 FGMSKYQNR-RTMNSSDRALLNAIREINSMADRINLTKTIVDRANNLFKQVHDGKNLKGR 147
+ + K+Q R R ++++R L A+ E++ + ++ L + + + A +++ + ++GR
Sbjct: 459 YRLRKWQRRIRVSDAAERNLAFALSELDRITSKLGLPRHVRENAAIIYRNAVEKGLIRGR 518
Query: 148 SNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGRCFKLILKALETSVDLITTGDF 207
S + + +A +Y ACR+ VPRT EI S++ +KEIGR ++ + + L + D+
Sbjct: 519 SIEGVVAAAIYAACRRCRVPRTLDEIAEASRVDRKEIGRTYRFLARELNIKLTPTNPIDY 578
Query: 208 MSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEI 267
+ RF S L LP V+ A I ++A E + GR P VAAAAIY+AS +R+Q+E+
Sbjct: 579 VPRFASELGLPGEVESKAIQILQQATEKGLTSGRGPTGVAAAAIYIASVLLGCRRTQREV 638
Query: 268 GDIAGVAEVTIRQSYKLMYPH 288
++AGV EVTIR YK + H
Sbjct: 639 AEVAGVTEVTIRNRYKELTEH 659
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 32/48 (66%), Gaps = 1/48 (2%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGP 63
+++DY + +C++CG V+ +++ D+G EWR F +E+ + RVG P
Sbjct: 43 VVKDYERAEIVCAKCGCVIKEKLFDIGPEWRAFDHEQK-IKRCRVGAP 89
>gi|452206486|ref|YP_007486608.1| transcription initiation factor TFB [Natronomonas moolapensis
8.8.11]
gi|452082586|emb|CCQ35847.1| transcription initiation factor TFB [Natronomonas moolapensis
8.8.11]
Length = 337
Score = 135 bits (340), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 94/278 (33%), Positives = 153/278 (55%), Gaps = 13/278 (4%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTF-SNEKSGVDPSRVGGPENPLLNGSDLS 74
L D G+ +C+ECGLVV + ID G EWR F S EK SRVG P +++ LS
Sbjct: 50 LTADSEHGETVCTECGLVVEEDEIDRGPEWRAFDSAEKD--QKSRVGAPTTNMMHDKGLS 107
Query: 75 TMIGPGRGDASFDGFG---------MSKYQNR-RTMNSSDRALLNAIREINSMADRINLT 124
T IG DA + G + K+ R RT +S +R L A+ EI+ MA + L
Sbjct: 108 TNIGWQDKDAYGNSLGSRQRQKMQRLRKWNERFRTRDSKERNLKQALGEIDRMASALGLP 167
Query: 125 KTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEI 184
+ + + A+ ++++ D L GRS + +++A LY A +Q G PR+ E+ VS++ K EI
Sbjct: 168 ENVRETASVIYRRALDDNLLPGRSIEGVSTAALYAAAKQAGTPRSLDEVAGVSRVEKSEI 227
Query: 185 GRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPI 244
R ++ +++ L + ++ RF S+L L ++ A + A + + G+SP+
Sbjct: 228 ARTYRYVVRELGLEIAPADPKSYVPRFASDLDLSEEAERRARQLLDGARDAGVHSGKSPV 287
Query: 245 SVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSY 282
+AAAA+Y AS +++K +Q + ++A ++EVTIR Y
Sbjct: 288 GLAAAAVYAASLLTNEKVTQNAVSEVADISEVTIRNRY 325
Score = 38.5 bits (88), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 54/96 (56%), Gaps = 1/96 (1%)
Query: 208 MSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEI 267
+ R S L LP V++ A+ I R+A++ +++PGRS V+ AA+Y A++ + RS E+
Sbjct: 157 IDRMASALGLPENVRETASVIYRRALDDNLLPGRSIEGVSTAALYAAAKQAGTPRSLDEV 216
Query: 268 GDIAGVAEVTIRQSYKLMYPHAS-KLFPQDFVFHTP 302
++ V + I ++Y+ + ++ P D + P
Sbjct: 217 AGVSRVEKSEIARTYRYVVRELGLEIAPADPKSYVP 252
>gi|448732733|ref|ZP_21715002.1| Transcription factor TFIIB cyclin-related protein [Halococcus
salifodinae DSM 8989]
gi|445804263|gb|EMA54522.1| Transcription factor TFIIB cyclin-related protein [Halococcus
salifodinae DSM 8989]
Length = 340
Score = 135 bits (340), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 85/280 (30%), Positives = 145/280 (51%), Gaps = 11/280 (3%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLST 75
L+ D G+ C+ECGLVV + ID G EWR F + + R G P L++ LS+
Sbjct: 40 LVNDTEHGETTCAECGLVVKEDEIDHGPEWRAFDSAERD-RKKRTGAPTTKLMHDKGLSS 98
Query: 76 MIGPGRGDASFDGFGMSKYQNR----------RTMNSSDRALLNAIREINSMADRINLTK 125
IG DA + K Q RT NS +R L A+ EI M + + K
Sbjct: 99 QIGWQDKDAYGNALSSRKRQQMSRLRTWDERFRTRNSKERNLKQALAEIERMGSALGVPK 158
Query: 126 TIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIG 185
+ + A+ ++++ L GRS + +++A LY A RQ G+PR+ +E+ AVS++ + E
Sbjct: 159 DVRETASVIYRRALSEDLLPGRSIEGVSTAALYAAIRQMGLPRSVEEVSAVSRVDEMEFK 218
Query: 186 RCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPIS 245
R ++ I + L + ++ RF S+L + + + A + + +E G+SP+
Sbjct: 219 RAYRYINQELSLEIGPPAPDQYLPRFASDLGVSDETEGRARELIQTVMEEGAHSGKSPVG 278
Query: 246 VAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLM 285
+A AA+Y A ++++ +Q E+ ++ GV+ VTIR Y+ +
Sbjct: 279 LAGAALYAAGILTNNRLTQDEVSEVVGVSTVTIRNRYQEL 318
>gi|448680026|ref|ZP_21690465.1| transcription initiation factor IIB [Haloarcula argentinensis DSM
12282]
gi|445769674|gb|EMA20747.1| transcription initiation factor IIB [Haloarcula argentinensis DSM
12282]
Length = 286
Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 88/265 (33%), Positives = 136/265 (51%), Gaps = 10/265 (3%)
Query: 24 DQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLSTMIG----- 78
+ +C CGLVVG+ ID G EWR+F ++ + D +R G P + LST IG
Sbjct: 21 ESVCRSCGLVVGEDAIDPGPEWRSFDDDDT--DRARTGAPLTRSRHDRGLSTKIGRSTRL 78
Query: 79 PGRGDASFDGFGMSKYQNRRTMNSS-DRALLNAIREINSMADRINLTKTIVDRANNLFKQ 137
GR F + + NR ++S +R + A EI + + L+ I DRA LF+
Sbjct: 79 KGRKRRQF--ARLRREHNRAQISSKRERNKVYAFTEIRRIISSMALSDAIRDRACVLFES 136
Query: 138 VHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGRCFKLILKALET 197
+ L+GR+ + A+A +Y CR EGV RT EIC V+K + E+ + + + L
Sbjct: 137 AQNEALLQGRTLEGFAAAAIYATCRTEGVARTVDEICTVAKATPAELRAAYDALNRELGL 196
Query: 198 SVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQA 257
I +++ RF + L LP V++ A + +A + +V GR+P VAAA +Y A+Q
Sbjct: 197 PTGPIDPREYVPRFATTLDLPTAVRQRAERLVDEAQDRGLVSGRNPAGVAAACLYTAAQE 256
Query: 258 SSDKRSQKEIGDIAGVAEVTIRQSY 282
+Q E + A V VT+R +Y
Sbjct: 257 QDVALTQAEAAETADVTPVTLRGTY 281
>gi|124026957|ref|YP_001012277.1| transcription initiation factor IIB [Hyperthermus butylicus DSM
5456]
gi|123977651|gb|ABM79932.1| transcription initiation factor IIB [Hyperthermus butylicus DSM
5456]
Length = 318
Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 95/293 (32%), Positives = 159/293 (54%), Gaps = 12/293 (4%)
Query: 12 PDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGS 71
P ++ D G+ IC+ G VV D VID G EWR ++ E+ SRVG P L
Sbjct: 26 PPEYIVFDEERGEYICTLTGEVVEDTVIDTGPEWRAYTPEEK-TKRSRVGSPLTHTLPDY 84
Query: 72 DLSTMIGPGRGDAS---------FDGFGMSKYQNR-RTMNSSDRALLNAIREINSMADRI 121
+ T I G DA+ + + + Q + R S ++ + A REI + + +
Sbjct: 85 GVLTTIS-GYRDATGRKLEARLRIEASRLRRLQAKLRATTSIEKNIEQAAREITRLIEAL 143
Query: 122 NLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISK 181
NL ++++D A +++Q + ++GRS +++A+A +Y ACR G+PR+ +I + K +
Sbjct: 144 NLPRSVIDTAMMIYRQAAEKGLVRGRSLESMAAAAVYAACRIRGIPRSIDDIAELVKGGR 203
Query: 182 KEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGR 241
KE+ RC++LI++ L + ++ ++SR S L L V+K A I +A ++ + G+
Sbjct: 204 KEVARCYRLIVRELRLRMPIVDPVRYVSRITSALRLSPAVEKRAAEILIRARKMGLTAGK 263
Query: 242 SPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKLFP 294
P +AAAAIY+A+ ++R+QKEI AGV EVT+R YK + + P
Sbjct: 264 DPAGLAAAAIYIAALELGERRTQKEIAAAAGVTEVTVRNRYKELVQKLNITLP 316
>gi|257052770|ref|YP_003130603.1| Transcription factor TFIIB cyclin-related [Halorhabdus utahensis
DSM 12940]
gi|256691533|gb|ACV11870.1| Transcription factor TFIIB cyclin-related [Halorhabdus utahensis
DSM 12940]
Length = 307
Score = 135 bits (339), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 77/269 (28%), Positives = 139/269 (51%), Gaps = 11/269 (4%)
Query: 24 DQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLSTMIGPGRGD 83
+ +C +CGL++ + ID G EWR+F ++++ +P R G P P + +ST IG
Sbjct: 36 ETVCEDCGLILHEEPIDHGPEWRSFEDDRT--NPERTGAPLTPTRHDRGISTEIGRKTDG 93
Query: 84 ASFDGFGMSKYQ---------NRRTMNSSDRALLNAIREINSMADRINLTKTIVDRANNL 134
D G + Q R + S+R L + + E++ + ++ + I D+A +L
Sbjct: 94 KGNDLSGSKRRQLGRFRREHSRARFRSKSERNLAHGLSEVSRIVSALDASDVIDDQACDL 153
Query: 135 FKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGRCFKLILKA 194
F+ GRS +A+A+ +Y ACR +P TF E+ AVS+++K+ + ++ + +
Sbjct: 154 FRSAQGEDLFHGRSIEAMAAGSVYAACRCNRLPWTFDEVSAVSRVNKERVENAYRALNRE 213
Query: 195 LETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMA 254
L + ++ R S L + V++ A + ++A E I G +P VAA +Y A
Sbjct: 214 LGLPTVPPSPQQYVPRLASELGVSEDVRRMADRLTKQAEERGIANGPNPAGVAAGCLYHA 273
Query: 255 SQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
Q S +Q+EI ++AGV+ T+RQ ++
Sbjct: 274 VQKSGADLTQQEIAEVAGVSPATLRQRWR 302
>gi|222479934|ref|YP_002566171.1| Zinc finger TFIIB-type domain protein [Halorubrum lacusprofundi
ATCC 49239]
gi|222452836|gb|ACM57101.1| Zinc finger TFIIB-type domain protein [Halorubrum lacusprofundi
ATCC 49239]
Length = 333
Score = 135 bits (339), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 99/285 (34%), Positives = 155/285 (54%), Gaps = 21/285 (7%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTF-SNEKSGVDPSRVGGPENPLLNGSDLS 74
LI D G+ +CSECGLVV +D G EWR F S+E+ SRVG P +++ LS
Sbjct: 46 LITDTEHGETVCSECGLVVEQDSVDRGPEWRAFDSSERDS--KSRVGAPTTNMMHDKGLS 103
Query: 75 TMIGPGRGDASFDGFGMS-------------KYQNR-RTMNSSDRALLNAIREINSMADR 120
T IG DA +G S + R RT +S +R L A+ EI+ MA
Sbjct: 104 TNIGWQDKDA----YGKSLSSRQRQRMQRLRTWNERFRTRDSKERNLKQALGEIDRMASA 159
Query: 121 INLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKIS 180
+ L + + A+ ++++ L GRS + +A+A LY A RQ G PR+ EI AVS++
Sbjct: 160 LGLPDNVRETASVIYRRALSENLLPGRSIEGVATAALYAAARQAGNPRSLDEISAVSRVD 219
Query: 181 KKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPG 240
K E+ R ++ +++ L+ + G ++ RF S L L Q+ A + A I G
Sbjct: 220 KMELTRTYRYVIRELKLEIQPADPGSYVPRFVSRLGLSEETQRVARELLDSAKRAGITSG 279
Query: 241 RSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLM 285
+SP+ +AA+A+Y A+ S++K +Q ++ ++A ++EVTIR YK +
Sbjct: 280 KSPVGLAASAVYAAALLSNEKVTQSQVSEVADISEVTIRNRYKEL 324
>gi|408403957|ref|YP_006861940.1| transcription initiation factor IIB [Candidatus Nitrososphaera
gargensis Ga9.2]
gi|408364553|gb|AFU58283.1| transcription initiation factor IIB [Candidatus Nitrososphaera
gargensis Ga9.2]
Length = 322
Score = 135 bits (339), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 80/293 (27%), Positives = 151/293 (51%), Gaps = 10/293 (3%)
Query: 6 VCCYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVG-SEWRTFSNEKSGVDPSRVGGPE 64
V C + ++ D+ G+ ICS CG+V+ DRV +WR FS ++ SR G P
Sbjct: 5 VVCSACKNEVVVTDHECGEVICSRCGIVI-DRVESPAVQDWRAFSVDEF-YRKSRTGAPT 62
Query: 65 NPLLNGSDLSTMIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADRINLT 124
+ L T IG + + F + + R ++DR+L A+ E+ + + + L
Sbjct: 63 SLARYNKGLLTSIGNSKANGL--NFNRIRVWDFRIQAANDRSLKQALPELEHLKESLGLP 120
Query: 125 KTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEI 184
IV+++ +++ +KGR+ ++ +A +Y+ACR+ PRT EI S +++K+I
Sbjct: 121 DAIVEKSAYFYRKASRLGLIKGRTVSSVLAASVYLACRELENPRTLSEIATASNVARKKI 180
Query: 185 GRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPI 244
R ++++++ + + + ++R + + + ++ A I R+ V + I G+ P+
Sbjct: 181 SRDYRMLVRMFDPKIPTVDHARCITRIANKVGVSEKTKRIAVKIMREIVAMQISAGKGPM 240
Query: 245 SVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKLFPQDF 297
+AA +Y+A + + ++QKE+ AGV EVTIR Y + K + QDF
Sbjct: 241 GIAATVLYIACMHAGEVKTQKELSIAAGVTEVTIRNRYSEL-----KKYLQDF 288
>gi|448314361|ref|ZP_21504059.1| transcription factor TFIIB cyclin-related protein [Natronolimnobius
innermongolicus JCM 12255]
gi|445595188|gb|ELY49300.1| transcription factor TFIIB cyclin-related protein [Natronolimnobius
innermongolicus JCM 12255]
Length = 352
Score = 135 bits (339), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 98/319 (30%), Positives = 159/319 (49%), Gaps = 42/319 (13%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTF-SNEKSGVDPSRVGGPENPLLNGSDLS 74
LI D + +C +CGLVV + ID G EWR F + EK SRVG P +++ LS
Sbjct: 35 LISDTEHAETVCEDCGLVVEEDEIDRGPEWRAFDAAEKD--KKSRVGAPTTNMMHDQGLS 92
Query: 75 TMIGPGRGDA---SFDGFGMSKYQNRRTMN-------SSDRALLNAIREINSMADRINLT 124
T IG DA S K Q RT N S +R L A+ EI+ MA + L
Sbjct: 93 TNIGWQDKDAYGRSLSSRQRQKMQRLRTWNERFRTRDSKERNLKQALGEIDRMASALGLP 152
Query: 125 KTIVDRANNLFKQVHD-----GKN------------------------LKGRSNDAIASA 155
+ + + A+ ++++ + G++ L GRS + +A+A
Sbjct: 153 ENVRETASVIYRRALEEDLLPGRSIEGVATASLYASSVIYRRALEEDLLPGRSIEGVATA 212
Query: 156 CLYIACRQEGVPRTFKEICAVSKISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNL 215
LY + RQ G PR+ EI AVS++ K E+ R ++ I++ L V ++ RF S+L
Sbjct: 213 SLYASARQAGTPRSLDEISAVSRVEKMELTRTYRYIIRELGLEVKPADPEHYVPRFVSDL 272
Query: 216 SLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAE 275
L + ++ A + A + + G+SP+ +AAAA+Y A+ +++K +Q ++ ++A ++E
Sbjct: 273 DLSDETERMARELLESARQEGVHSGKSPVGLAAAAVYAAALLTNEKVTQNDVSEVASISE 332
Query: 276 VTIRQSYKLMYPHASKLFP 294
VTIR YK + + P
Sbjct: 333 VTIRNRYKELLEASDTAAP 351
>gi|448664209|ref|ZP_21684012.1| transcription initiation factor IIB [Haloarcula amylolytica JCM
13557]
gi|445774854|gb|EMA25868.1| transcription initiation factor IIB [Haloarcula amylolytica JCM
13557]
Length = 286
Score = 134 bits (338), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 87/265 (32%), Positives = 137/265 (51%), Gaps = 10/265 (3%)
Query: 24 DQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLSTMIG----- 78
+ +C CGLVVG+ ID G EWR+F ++ + D +R G P + LST IG
Sbjct: 21 ESVCGSCGLVVGEDAIDPGPEWRSFDDDDT--DRARTGAPLTRSRHDRGLSTKIGRSTRL 78
Query: 79 PGRGDASFDGFGMSKYQNRRTMNSS-DRALLNAIREINSMADRINLTKTIVDRANNLFKQ 137
GR F + + NR ++S +R + A EI + + L+ I DRA LF+
Sbjct: 79 KGRKRRQF--ARLRREHNRAQISSKRERNKVYAFTEIRRIISSMALSDAIRDRACVLFES 136
Query: 138 VHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGRCFKLILKALET 197
+ L+GR+ + A+A +Y CR EGV RT E+C V+K ++ E+ + + + L
Sbjct: 137 AQNEDLLQGRTLEGFAAAAVYATCRTEGVARTVDELCTVAKATQAELRAAYDALNRELGL 196
Query: 198 SVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQA 257
I +++ RF + L LP V++ A + +A + +V GR+P VAAA +Y A+Q
Sbjct: 197 PTGPIDPREYVPRFATTLDLPTAVRQRAERLVDEAQDRGLVSGRNPAGVAAACLYTAAQE 256
Query: 258 SSDKRSQKEIGDIAGVAEVTIRQSY 282
+Q E + A V VT+R +Y
Sbjct: 257 RDVALTQAEAAETADVTPVTLRGTY 281
>gi|345006049|ref|YP_004808902.1| transcription initiation factor IIB [halophilic archaeon DL31]
gi|344321675|gb|AEN06529.1| Transcription initiation factor IIB [halophilic archaeon DL31]
Length = 324
Score = 134 bits (338), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 92/285 (32%), Positives = 147/285 (51%), Gaps = 13/285 (4%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTF-SNEKSGVDPSRVGGPENPLLNGSDLS 74
L D + +C++CGLVV + ID G EWR F S+EK SRVG P +++ LS
Sbjct: 30 LHNDEAQAETVCNDCGLVVEEDAIDRGPEWRAFDSSEKD--KKSRVGAPTTKMMHDDGLS 87
Query: 75 TMIGPGRGDASFDGFGMSKYQNR----------RTMNSSDRALLNAIREINSMADRINLT 124
T IG DA + S+ Q RT + +R L A+ EI+ MA + L
Sbjct: 88 TNIGWQNKDAYGNSLSASQRQKMQRLRTWNERFRTRDHKERNLKQALGEIDRMASALGLP 147
Query: 125 KTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEI 184
+ + + A+ ++++ L GRS + IA+A L+ A R VPR+ E+ AVS++ +
Sbjct: 148 ENVRETASVIYRRALAEDLLPGRSIEGIATASLHAAARMGNVPRSLDEMAAVSRVDQATF 207
Query: 185 GRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPI 244
R ++ I++ L V +++ RF S L L + + A + A ++ G+SP+
Sbjct: 208 KRAYRYIVRELSLEVQPADPLEYLPRFASELELSDETEHRARELLETAKRQNVHSGKSPV 267
Query: 245 SVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHA 289
+AAAAIY A +D +Q E+ D+ ++EVTIR Y+ + A
Sbjct: 268 GLAAAAIYAAGVLCNDALTQTEVSDVTDMSEVTIRNRYQELLQAA 312
>gi|448611149|ref|ZP_21661783.1| transcription initiation factor TFB [Haloferax mucosum ATCC
BAA-1512]
gi|445743581|gb|ELZ95062.1| transcription initiation factor TFB [Haloferax mucosum ATCC
BAA-1512]
Length = 288
Score = 134 bits (338), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 84/267 (31%), Positives = 140/267 (52%), Gaps = 10/267 (3%)
Query: 22 AGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLSTMIG--- 78
AG+ +C++CGLVV + ID G EWR+F+++ +P+R G P + LST IG
Sbjct: 21 AGETVCTDCGLVVSEYRIDHGPEWRSFADDDR--NPARTGAPLTRSRHDRGLSTEIGRST 78
Query: 79 --PGRGDASFDGFGMSKYQNR-RTMNSSDRALLNAIREINSMADRINLTKTIVDRANNLF 135
GR F + + NR R + +R + A EI + + L I D+A +LF
Sbjct: 79 RIKGRKRRKF--ARLRRQHNRARISSKRERNQVYAFTEIRRVTGALGLPNHIRDQACSLF 136
Query: 136 KQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGRCFKLILKAL 195
+ + L+GRS + A+AC+Y ACR G+ R+ +E+C VSK ++ E ++ + + L
Sbjct: 137 ESAQNEDLLRGRSLEGFAAACVYAACRVGGISRSIEEVCTVSKSTESEHQAAYRALNREL 196
Query: 196 ETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMAS 255
V +++ RF + L L V++ A A + ++ G++P VAAA +Y A+
Sbjct: 197 GLPVAPADPTEYLPRFATKLDLGRDVERRAREYVADARDEGLIAGKNPCGVAAACLYTAA 256
Query: 256 QASSDKRSQKEIGDIAGVAEVTIRQSY 282
+ +Q D+A V VT+R++Y
Sbjct: 257 RDLDVDCTQSAAADVADVTPVTLRKTY 283
>gi|332795784|ref|YP_004457284.1| transcription initiation factor TFIIB [Acidianus hospitalis W1]
gi|332693519|gb|AEE92986.1| transcription initiation factor TFIIB [Acidianus hospitalis W1]
Length = 291
Score = 134 bits (338), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 92/281 (32%), Positives = 155/281 (55%), Gaps = 7/281 (2%)
Query: 4 NKVCCYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGP 63
++V C P ++ D G+ IC+E G V+ D+V+D G EWR ++ E++ + SR G
Sbjct: 3 SEVIC---PKDKIVFDANRGEYICTETGEVLEDKVVDQGPEWRAYTEEENR-ERSRAGTI 58
Query: 64 ENPLLNGSDLSTMIGPGRGDASFDGFGMSKYQNR-RTMNSSDRALLNAIREINSMADRIN 122
N ++ LST + R + K Q R R S R L+ A+ + + D +
Sbjct: 59 -NLAVHDMGLSTYMDT-RAKDRIKAMRLRKLQIRSRVGTSEQRNLVKAMTILERIIDNLG 116
Query: 123 LTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKK 182
L K + + A ++++ + K +KGRS + + +A +Y ACR+ +P T EI + +KK
Sbjct: 117 LPKAVKEEAAIIYRKALEKKLIKGRSIEEVVAASVYAACRKMNIPTTLDEISKATSANKK 176
Query: 183 EIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRS 242
EIG+ ++L+L+ T V ++ + S L L V AAT I +A + I G+
Sbjct: 177 EIGKAYRLLLREDVTEVPASDPKYYVMKIASLLGLSGKVMTAATEIVERAKKAGITSGKD 236
Query: 243 PISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
P S+AAAA+Y+A+ + ++RSQ+EI +++GV +VTIR Y+
Sbjct: 237 PASIAAAAVYIAANINGERRSQREISEVSGVTQVTIRNRYR 277
Score = 45.1 bits (105), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 44/86 (51%)
Query: 200 DLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASS 259
+L+ + R NL LP V++ A I RKA+E ++ GRS V AA++Y A + +
Sbjct: 100 NLVKAMTILERIIDNLGLPKAVKEEAAIIYRKALEKKLIKGRSIEEVVAASVYAACRKMN 159
Query: 260 DKRSQKEIGDIAGVAEVTIRQSYKLM 285
+ EI + I ++Y+L+
Sbjct: 160 IPTTLDEISKATSANKKEIGKAYRLL 185
>gi|433421465|ref|ZP_20405775.1| transcription initiation factor TFB, partial [Haloferax sp.
BAB2207]
gi|432198878|gb|ELK55114.1| transcription initiation factor TFB, partial [Haloferax sp.
BAB2207]
Length = 294
Score = 134 bits (338), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 85/258 (32%), Positives = 130/258 (50%), Gaps = 21/258 (8%)
Query: 4 NKVC--CYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVG 61
+VC C H L+ D G+ IC +CGLVV D V+D G EWR F + + SRVG
Sbjct: 34 TQVCPECSGH----LVTDEEHGETICEDCGLVVEDTVVDRGPEWRAFDSAERD-SKSRVG 88
Query: 62 GPENPLLNGSDLSTMIGPGRGDASFDGFGMSKYQNR------------RTMNSSDRALLN 109
P +++ LST IG DA G +S Q RT +S +R L
Sbjct: 89 APTTKMMHDKGLSTNIGWQNKDAY--GKSLSPRQREQMQRLRTWNERFRTRDSKERNLKQ 146
Query: 110 AIREINSMADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRT 169
A+ EI+ MA + L + + + A+ ++++ D L GRS + +A++C Y A R GVPR+
Sbjct: 147 ALGEIDRMASALGLPENVRETASVIYRRALDDDLLPGRSIEGVATSCTYAAARMAGVPRS 206
Query: 170 FKEICAVSKISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIA 229
EI VS++ K E+ R ++ I + L V ++ RF S L L + + A +
Sbjct: 207 LDEIAEVSRVEKSEVARTYRYIARELSLEVKPADPEQYVPRFASELGLSDESKMRARQLL 266
Query: 230 RKAVELDIVPGRSPISVA 247
+ A E + G+SP+ +A
Sbjct: 267 KNAKEKGVHSGKSPVGLA 284
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 54/96 (56%), Gaps = 1/96 (1%)
Query: 208 MSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEI 267
+ R S L LP V++ A+ I R+A++ D++PGRS VA + Y A++ + RS EI
Sbjct: 151 IDRMASALGLPENVRETASVIYRRALDDDLLPGRSIEGVATSCTYAAARMAGVPRSLDEI 210
Query: 268 GDIAGVAEVTIRQSYKLMYPHAS-KLFPQDFVFHTP 302
+++ V + + ++Y+ + S ++ P D + P
Sbjct: 211 AEVSRVEKSEVARTYRYIARELSLEVKPADPEQYVP 246
>gi|15668963|ref|NP_247767.1| transcription initiation factor IIB [Methanocaldococcus jannaschii
DSM 2661]
gi|2833587|sp|Q58192.1|TF2B_METJA RecName: Full=Transcription initiation factor IIB; Short=TFIIB;
Contains: RecName: Full=Endonuclease Mja Tfb; AltName:
Full=Mja TFIIB intein; AltName: Full=Mja Tfb intein
gi|1591481|gb|AAB98771.1| transcription initiation factor IIB (TFIIB) [Methanocaldococcus
jannaschii DSM 2661]
Length = 673
Score = 134 bits (338), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 69/201 (34%), Positives = 118/201 (58%), Gaps = 1/201 (0%)
Query: 89 FGMSKYQNR-RTMNSSDRALLNAIREINSMADRINLTKTIVDRANNLFKQVHDGKNLKGR 147
+ + K+Q R R ++++R L A+ E++ + ++ L + + + A +++ + ++GR
Sbjct: 466 YRLRKWQRRIRVSDAAERNLAFALSELDRITSKLGLPRHVRENAAIIYRGAVEKGLIRGR 525
Query: 148 SNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGRCFKLILKALETSVDLITTGDF 207
S + + +A +Y ACR+ VPRT EI S++ +KEIGR ++ + + L + D+
Sbjct: 526 SIEGVVAAAIYAACRRCRVPRTLDEIAEASRVDRKEIGRTYRFLARELNIKLTPTNPIDY 585
Query: 208 MSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEI 267
+ RF S L LP V+ A I ++A E + GR P VAAAAIY+AS +R+Q+E+
Sbjct: 586 VPRFASELGLPGEVESKAIQILQQAAEKGLTSGRGPTGVAAAAIYIASVLLGCRRTQREV 645
Query: 268 GDIAGVAEVTIRQSYKLMYPH 288
++AGV EVTIR YK + H
Sbjct: 646 AEVAGVTEVTIRNRYKELTEH 666
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 32/48 (66%), Gaps = 1/48 (2%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGP 63
+++DY + +C++CG V+ +++ D+G EWR F +E+ + RVG P
Sbjct: 50 VVKDYERAEIVCAKCGCVIKEKLFDIGPEWRAFDHEQK-IKRCRVGAP 96
>gi|448739674|ref|ZP_21721686.1| Transcription factor TFIIB cyclin-related protein [Halococcus
thailandensis JCM 13552]
gi|445799293|gb|EMA49674.1| Transcription factor TFIIB cyclin-related protein [Halococcus
thailandensis JCM 13552]
Length = 355
Score = 134 bits (337), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 86/277 (31%), Positives = 143/277 (51%), Gaps = 11/277 (3%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLST 75
L+ED G+ C+ECGLVV ID G EWR F + + R G P +++ LS+
Sbjct: 62 LVEDETHGETTCTECGLVVSTDEIDHGPEWRAFDSAERDRK-KRTGAPTTKMMHDKGLSS 120
Query: 76 MIGPGRGDASFDGFGMSKYQNR----------RTMNSSDRALLNAIREINSMADRINLTK 125
IG DA + K Q RT +S +R L A+ EI MA + + K
Sbjct: 121 QIGWQNKDAYGNTLSARKRQRMQRLRTWDERFRTRDSKERNLKQALGEIERMASALGVPK 180
Query: 126 TIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIG 185
+ + A+ ++++ L GRS + +++A LY RQ G+PR+ +E+ AVS++ + E
Sbjct: 181 DVRETASVIYRRALSEDLLPGRSIEGVSTAALYAGIRQMGLPRSVEEVGAVSRVDEMEFK 240
Query: 186 RCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPIS 245
R ++ I + L+ + ++SRF S+L + ++ A + A + G+SP+
Sbjct: 241 RAYRYINQELDLEIGPPNPEQYVSRFASDLDVSEETERRARDLLETAERQAVHSGKSPVG 300
Query: 246 VAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSY 282
+A AA+Y A ++ K +Q E+ ++A V+ VTIR Y
Sbjct: 301 LAGAALYAAGILTNRKLTQDEVSEVAEVSNVTIRNRY 337
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 47/78 (60%)
Query: 208 MSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEI 267
+ R S L +P V++ A+ I R+A+ D++PGRS V+ AA+Y + RS +E+
Sbjct: 169 IERMASALGVPKDVRETASVIYRRALSEDLLPGRSIEGVSTAALYAGIRQMGLPRSVEEV 228
Query: 268 GDIAGVAEVTIRQSYKLM 285
G ++ V E+ +++Y+ +
Sbjct: 229 GAVSRVDEMEFKRAYRYI 246
>gi|340344692|ref|ZP_08667824.1| Transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosoarchaeum koreensis MY1]
gi|339519833|gb|EGP93556.1| Transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosoarchaeum koreensis MY1]
Length = 305
Score = 134 bits (337), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 80/278 (28%), Positives = 154/278 (55%), Gaps = 11/278 (3%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLST 75
L+ D G++ C +CG V+ ++ + G EWR+F+ ++ G + +R G P + ++ LST
Sbjct: 19 LLTDDVTGERFCGKCGYVISEKSQESGPEWRSFTQDEHG-NKARAGAPTSLTMHDMGLST 77
Query: 76 MIGPGRGDAS---FDGFGMSKYQNRRTMNSS-------DRALLNAIREINSMADRINLTK 125
+I P DAS S + RT +S DR L A+ E+N + D++ L+
Sbjct: 78 IINPMNKDASGKPLTASMKSTIERLRTWDSRSQVHESVDRNLRQALSELNRLKDKLALSD 137
Query: 126 TIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIG 185
++++A ++++ + K ++GRS A+ ++ LY ACR PRT ++ + + KK+I
Sbjct: 138 AVIEKAAYIYRKAIEKKLVRGRSISAMIASALYAACRDTETPRTLNDVGEAANLKKKDIA 197
Query: 186 RCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPIS 245
RC++L+ + L+ + ++ ++R S + + ++ A + + + E + G+ P+
Sbjct: 198 RCYRLLHRELDLKMPVVDPIQCVARIASRIGITEKTKRYAAKVLKISQEHEESAGKDPMG 257
Query: 246 VAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
+AAAA+Y+A + + +Q++I + A V EVTIR YK
Sbjct: 258 LAAAALYLACVKNGEDITQRDIAEAASVTEVTIRNRYK 295
Score = 47.0 bits (110), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 48/79 (60%)
Query: 208 MSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEI 267
++R L+L + V + A +I RKA+E +V GRS ++ A+A+Y A + + R+ ++
Sbjct: 126 LNRLKDKLALSDAVIEKAAYIYRKAIEKKLVRGRSISAMIASALYAACRDTETPRTLNDV 185
Query: 268 GDIAGVAEVTIRQSYKLMY 286
G+ A + + I + Y+L++
Sbjct: 186 GEAANLKKKDIARCYRLLH 204
>gi|76802797|ref|YP_330892.1| transcription initiation factor TFB 5 [Natronomonas pharaonis DSM
2160]
gi|76558662|emb|CAI50254.1| transcription initiation factor TFB [Natronomonas pharaonis DSM
2160]
Length = 327
Score = 134 bits (337), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 101/284 (35%), Positives = 155/284 (54%), Gaps = 13/284 (4%)
Query: 13 DAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTF-SNEKSGVDPSRVGGPENPLLNGS 71
DA L D G+ +CS+CGLVV + ID G EWR F S EK + SRVG P +++
Sbjct: 37 DARLQADTEHGETVCSDCGLVVEEDEIDRGPEWRAFDSAEKD--EKSRVGAPTTNMMHDK 94
Query: 72 DLSTMIGPGRGDA---SFDGFGMSKYQNRRTMN-------SSDRALLNAIREINSMADRI 121
LST IG DA S K Q RT N S +R L A+ EI MA +
Sbjct: 95 GLSTNIGWQDKDAYGNSLSSRQRQKMQRLRTWNERFRTRDSKERNLKQALGEIERMASAL 154
Query: 122 NLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISK 181
L + + + A+ ++++ L GRS + +A+A LY A RQ VPR+ E+ VS++ +
Sbjct: 155 GLPENVRETASVIYRRALSEDLLPGRSIEGVATAALYAAARQANVPRSLDEVEHVSRVDR 214
Query: 182 KEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGR 241
E+ R ++ I++ L V ++ RF S+L + V++ A + A E ++ G+
Sbjct: 215 MELTRTYRYIIRELNLEVQPADPESYIPRFVSDLDRSDEVERRARQLIDNAREAGVISGK 274
Query: 242 SPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLM 285
SP+ +AAAA+Y AS ++K +Q E+ ++A ++EVTIR YK +
Sbjct: 275 SPVGLAAAAVYAASLLCNEKVTQTEVSEVAEISEVTIRNRYKEL 318
>gi|290559596|gb|EFD92924.1| Transcription factor TFIIB cyclin-related protein [Candidatus
Parvarchaeum acidophilus ARMAN-5]
Length = 307
Score = 134 bits (337), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 72/274 (26%), Positives = 142/274 (51%), Gaps = 8/274 (2%)
Query: 19 DYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLSTMIG 78
D G+ +C CG V+ ID G EWR+F +E+ R+G P + ST+IG
Sbjct: 23 DKSTGELVCQNCGYVIEGDAIDYGREWRSFEDERDE-GKGRMGSPLSYAKYDKGTSTVIG 81
Query: 79 PGRGDASFDG------FGMSKYQNRRTMNSSDRALLNAIREINSMADRINLTKTIVDRAN 132
+ + K+Q R + +R L A+ E+ ++R++++ I + A
Sbjct: 82 KASESIKLSNANRRTFYKLRKWQPR-ISTAYERNLKFALTELRRASNRLHVSNIIQEEAA 140
Query: 133 NLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGRCFKLIL 192
++++ + ++GRS +++ + LY A R+ P T EI ++ +KE+G+ ++L+
Sbjct: 141 KMYREAITRRLVRGRSMESVIAGALYAAARKHNRPITLDEISDTFEVERKEVGKAYRLLC 200
Query: 193 KALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIY 252
+ L + + D++ +F S L + N A + ++A + + G+ P+ +AAA +Y
Sbjct: 201 RELGIKILPTSPSDYIYKFASELKVSNKTVSDAVKLLKEAEDKGLTSGKGPMGIAAAVLY 260
Query: 253 MASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMY 286
+++ + +K++Q++ AG+ EVTIR YK +Y
Sbjct: 261 VSTLINKEKKTQRDAAKAAGITEVTIRNRYKELY 294
>gi|300712884|ref|YP_003738696.1| Transcription factor TFIIB cyclin-related protein [Halalkalicoccus
jeotgali B3]
gi|448295398|ref|ZP_21485466.1| Transcription factor TFIIB cyclin-related protein [Halalkalicoccus
jeotgali B3]
gi|299126568|gb|ADJ16905.1| Transcription factor TFIIB cyclin-related protein [Halalkalicoccus
jeotgali B3]
gi|445584335|gb|ELY38658.1| Transcription factor TFIIB cyclin-related protein [Halalkalicoccus
jeotgali B3]
Length = 340
Score = 134 bits (337), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 86/280 (30%), Positives = 144/280 (51%), Gaps = 11/280 (3%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLST 75
L+ D G+ C+ECGLVV + ID G EWR F + + R G P L++ LS+
Sbjct: 40 LVNDAEHGETTCAECGLVVKEDEIDHGPEWRAFDSAERD-RKKRTGAPTTKLMHDKGLSS 98
Query: 76 MIGPGRGDASFDGFGMSKYQNR----------RTMNSSDRALLNAIREINSMADRINLTK 125
IG DA + K Q RT NS +R L A+ EI M + + +
Sbjct: 99 QIGWQNKDAYGNALSSRKRQQMSRLRTWDERFRTRNSKERNLKQALAEIERMGSALGVPE 158
Query: 126 TIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIG 185
+ + A+ ++++ L GRS + + +A LY A RQ G+PR+ +E+ AVS++ + E
Sbjct: 159 DVRETASVIYRRALSEDLLPGRSIEGVTTAALYAAIRQMGLPRSVEEVGAVSRVDEMEFK 218
Query: 186 RCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPIS 245
R ++ I + L V ++ RF S+L++ + + A + + +E G+SP+
Sbjct: 219 RAYRYINQELSLEVGPPAPDQYLPRFASDLNVNDETEGRARELIQTVMEEGAHSGKSPVG 278
Query: 246 VAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLM 285
+A AA+Y A ++D +Q E+ ++ GV+ VTIR Y+ +
Sbjct: 279 LAGAALYAAGILTNDGLTQDEVSEVVGVSTVTIRNRYQEL 318
>gi|448589388|ref|ZP_21649547.1| transcription initiation factor TFB [Haloferax elongans ATCC
BAA-1513]
gi|445735816|gb|ELZ87364.1| transcription initiation factor TFB [Haloferax elongans ATCC
BAA-1513]
Length = 288
Score = 134 bits (337), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 83/267 (31%), Positives = 141/267 (52%), Gaps = 10/267 (3%)
Query: 22 AGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLSTMIG--- 78
+G+ +C++CGLVV + ID G EWR+F+++ +P+R G P + LST IG
Sbjct: 21 SGETVCNDCGLVVSEYRIDHGPEWRSFADDDR--NPARTGAPLTRSRHDRGLSTEIGRST 78
Query: 79 --PGRGDASFDGFGMSKYQNR-RTMNSSDRALLNAIREINSMADRINLTKTIVDRANNLF 135
GR F + + NR R + +R + A EI + ++L I ++A LF
Sbjct: 79 RIKGRKRRQF--ARLRRQHNRARISSKRERNQVYAFTEIRRLTSALSLPNHIREQACALF 136
Query: 136 KQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGRCFKLILKAL 195
+ + L+GRS + A+AC+Y ACR G+ R+ +E+C V+K ++ E ++ + + L
Sbjct: 137 ESAQNEDLLRGRSLEGFAAACVYAACRVAGIARSVEEVCDVAKATEAEHHAAYRALNRDL 196
Query: 196 ETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMAS 255
V +++ RF + L L V++ A A E +V G++P VAAA +Y A+
Sbjct: 197 GLPVAPTDPTEYIPRFATKLDLDRDVERRAREYVADAHEDGLVAGKNPCGVAAACLYTAA 256
Query: 256 QASSDKRSQKEIGDIAGVAEVTIRQSY 282
+ +Q + D+A V VT+R++Y
Sbjct: 257 RDVGADCTQADAADVADVTPVTLRKTY 283
Score = 45.4 bits (106), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 41/78 (52%)
Query: 208 MSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEI 267
+ R S LSLPN +++ A + A D++ GRS AAA +Y A + + RS +E+
Sbjct: 115 IRRLTSALSLPNHIREQACALFESAQNEDLLRGRSLEGFAAACVYAACRVAGIARSVEEV 174
Query: 268 GDIAGVAEVTIRQSYKLM 285
D+A E +Y+ +
Sbjct: 175 CDVAKATEAEHHAAYRAL 192
>gi|452208372|ref|YP_007488494.1| transcription initiation factor TFB [Natronomonas moolapensis
8.8.11]
gi|452084472|emb|CCQ37817.1| transcription initiation factor TFB [Natronomonas moolapensis
8.8.11]
Length = 330
Score = 134 bits (336), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 93/288 (32%), Positives = 152/288 (52%), Gaps = 13/288 (4%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTF-SNEKSGVDPSRVGGPENPLLNGSDLS 74
++ D + C +CG V+ ID G EWR F S EK+ D SRVG P+ L+ LS
Sbjct: 42 IVHDEAQAETHCQDCGRVLESDQIDRGPEWRAFDSREKN--DKSRVGAPQTQQLHDRGLS 99
Query: 75 TMI------GPGRGDASFDGFGMS---KYQNR-RTMNSSDRALLNAIREINSMADRINLT 124
T+I GR +S M K+ R RT N+ +R L A+ EIN MA +
Sbjct: 100 TVIDWRDEDAYGRSLSSLQRKKMRRLRKWDERFRTKNNRERNLKQALGEINRMASALGCP 159
Query: 125 KTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEI 184
I + + L++Q + L+GRS + +A+A LY R E PRT ++ AVS++ K EI
Sbjct: 160 DPIRETTSVLYRQALEKDMLRGRSVEGMATAALYAGSRLENAPRTLDDVAAVSRVDKIEI 219
Query: 185 GRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPI 244
R ++ + LE + +++RF S L + ++ + + + AVE + GR+P+
Sbjct: 220 ERTYRYLADELELEMTPTDPEAYVARFASELGCSDETERRSRELIQAAVEAGVHSGRNPV 279
Query: 245 SVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKL 292
+AA+A+Y A++ ++ Q ++ +IA V++VTIR Y + A ++
Sbjct: 280 GIAASALYAAAKLTNQDVIQDDLAEIANVSKVTIRNRYTEILEAADEV 327
>gi|448419967|ref|ZP_21580777.1| transcription initiation factor iib (tfiib) [Halosarcina pallida
JCM 14848]
gi|445674135|gb|ELZ26680.1| transcription initiation factor iib (tfiib) [Halosarcina pallida
JCM 14848]
Length = 348
Score = 134 bits (336), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 85/288 (29%), Positives = 150/288 (52%), Gaps = 11/288 (3%)
Query: 8 CYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPL 67
C E L D G+ +C CGLVV + +D G EWR F + K SRVG P +
Sbjct: 43 CPECGSTDLATDEGRGETVCENCGLVVDEDAVDRGPEWRAF-DSKEKDQKSRVGAPTTNM 101
Query: 68 LNGSDLSTMIGPGRGDASFDGFGMSKYQNR----------RTMNSSDRALLNAIREINSM 117
++ LST IG DA + ++ Q RT +S +R L A+ EI+ M
Sbjct: 102 MHDKGLSTNIGWQDKDAYGNSLSSNQRQKMKRLRTWNERFRTRDSKERNLKQALGEIDRM 161
Query: 118 ADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVS 177
A + L + + ++ ++++ + L GRS + IA+A L+ A R VPR+ E+ VS
Sbjct: 162 ASALGLPDNVRETSSVIYRRALEDDLLPGRSIEGIATASLHAAARMAQVPRSLDEVARVS 221
Query: 178 KISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDI 237
++ + E R ++ I++ L + +++ RF S++ +P ++ A + A ++
Sbjct: 222 RVDEDEFERAYRYIVRELSLEIKPADPVEYLPRFASDVEVPKETERTARELLENAKRENV 281
Query: 238 VPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLM 285
G+SP+ +AAAA+Y A+Q +++ +Q ++ + ++EVTIR Y+ +
Sbjct: 282 HSGKSPVGLAAAALYAAAQLTNEDVTQHQVSGVTDISEVTIRNRYQEL 329
>gi|448732508|ref|ZP_21714784.1| transcription initiation factor TFB [Halococcus salifodinae DSM
8989]
gi|445804622|gb|EMA54863.1| transcription initiation factor TFB [Halococcus salifodinae DSM
8989]
Length = 342
Score = 133 bits (335), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 95/308 (30%), Positives = 159/308 (51%), Gaps = 33/308 (10%)
Query: 8 CYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPL 67
C E A L G+ +C +CGL++ ID G EWR F N SRVG P
Sbjct: 27 CPECESASLTNSADQGELVCDDCGLILETDNIDRGPEWRAF-NHSERQSKSRVGAPTTQT 85
Query: 68 LNGSDLSTMIGPGRGDASFDGFG---------MSKYQNR-RTMNSSDRALLNAIREINSM 117
++ L+T IG DA + K+Q R RT ++ +R L A+ E + M
Sbjct: 86 MHDKGLTTQIGWQDKDAYGRSLSAEKRSQMNRLRKWQERVRTKDAGERNLQFALSETDRM 145
Query: 118 ADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVS 177
A + + +++ + ++ ++++ ++GRS +A+A++ LY ACR+EG+PR+ +E+ V+
Sbjct: 146 ASALGVPRSVREVSSVIYRRALSEDLIRGRSIEAVAASALYAACRKEGIPRSLEEVTHVA 205
Query: 178 KISKKEIGRCFKLILKALETSVDLITTGDFMS----------------------RFCSNL 215
++ +KEIGR ++ I + LE + + +++ RFCS+L
Sbjct: 206 RVEQKEIGRTYRYIARELELGMRPVDPQKYVTYRYIARELELGMRPVDPQKYVPRFCSSL 265
Query: 216 SLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAE 275
L VQ A + + ++ G+SP AAAAIY AS ++K++Q+E+ D+A V E
Sbjct: 266 DLSEEVQSKANEVIEASAAEGLLSGKSPTGYAAAAIYAASLLCNEKKTQREVADVAQVTE 325
Query: 276 VTIRQSYK 283
VTIR Y+
Sbjct: 326 VTIRNRYQ 333
>gi|21363018|sp|Q977X4.1|TF2B_PYROC RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|13752556|gb|AAK38724.1|AF367982_1 transcription factor B [Pyrodictium occultum]
Length = 310
Score = 133 bits (335), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 94/282 (33%), Positives = 156/282 (55%), Gaps = 12/282 (4%)
Query: 12 PDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGS 71
P ++ D G+ IC+ G VV + VID G EWR ++ E+ SRVG P L
Sbjct: 18 PPEYIVFDEERGEYICTLTGEVVEETVIDTGPEWRAYTPEER-TRRSRVGSPLTHTLPDY 76
Query: 72 DLSTMIGPGRGDAS---------FDGFGMSKYQNR-RTMNSSDRALLNAIREINSMADRI 121
+ T I G DA+ + + + Q + R S ++ + A REI + + +
Sbjct: 77 GILTTIS-GYRDANGRKLEARLRIEASRLRRLQAKLRATTSIEKNIEQAAREITRLVEAL 135
Query: 122 NLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISK 181
NL + I+D A +++Q + ++GRS +++A+A +Y ACR G+PR+ +I V K +
Sbjct: 136 NLPRGIIDTAMMIYRQAAEKGLVRGRSLESMAAAAVYAACRIRGIPRSIDDIAEVVKGGR 195
Query: 182 KEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGR 241
KE+ RC++LI++ L+ + ++ ++SR S L L V++ A I +A ++ + G+
Sbjct: 196 KEVARCYRLIVRELKLRMPIVDPVRYVSRIVSALRLSPAVERRAAEILVQARKMGLTAGK 255
Query: 242 SPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
P +AAAAIY+A+ ++R+QKEI AGV EVT+R YK
Sbjct: 256 DPAGLAAAAIYIAALELGERRTQKEIAAAAGVTEVTVRNRYK 297
>gi|110669504|ref|YP_659315.1| transcription initiation factor TFB [Haloquadratum walsbyi DSM
16790]
gi|109627251|emb|CAJ53741.1| transcription initiation factor TFB [Haloquadratum walsbyi DSM
16790]
Length = 314
Score = 133 bits (335), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 86/265 (32%), Positives = 133/265 (50%), Gaps = 10/265 (3%)
Query: 24 DQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLSTMIG----- 78
+ IC +CGLV+ + ID G EWR+F+++ + +P R G P + LST IG
Sbjct: 42 ETICGDCGLVLSEYRIDHGPEWRSFADDTT--NPKRTGAPLTRSRHDRGLSTEIGRSIRL 99
Query: 79 PGRGDASFDGFGMSKYQNR-RTMNSSDRALLNAIREINSMADRINLTKTIVDRANNLFKQ 137
GR F + + NR R +R + A EI + ++L K I D A +LF+
Sbjct: 100 TGRKRRQF--ARLRRQHNRARISTKRERNQVYAFTEIRRLTGALSLPKQIRDDACSLFRS 157
Query: 138 VHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGRCFKLILKALET 197
L+GRS + A+AC+Y ACR GV RT +EI ++K + E + + + L
Sbjct: 158 AQSEDLLRGRSLEGFAAACVYAACRVAGVARTIEEITDIAKATSAEQRAAYTALNRELGL 217
Query: 198 SVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQA 257
+ I ++ RF S L LP+ +++ A I GR+P VAAA +Y A++
Sbjct: 218 PIGPIDPAQYLPRFASELELPSNIERRACEYISMITAQGIGAGRNPSGVAAACLYTAARD 277
Query: 258 SSDKRSQKEIGDIAGVAEVTIRQSY 282
+ +Q+ DIA V VT+R +Y
Sbjct: 278 IGFELTQQTAADIADVTPVTLRATY 302
>gi|448310263|ref|ZP_21500109.1| transcription initiation factor IIB [Natronolimnobius
innermongolicus JCM 12255]
gi|445608424|gb|ELY62275.1| transcription initiation factor IIB [Natronolimnobius
innermongolicus JCM 12255]
Length = 354
Score = 133 bits (335), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 95/307 (30%), Positives = 156/307 (50%), Gaps = 42/307 (13%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTF-SNEKSGVDPSRVGGPENPLLNGSDLS 74
L+ D + +C +CGLVV + ID G EWR F + EK + SRVG P +++ LS
Sbjct: 38 LVSDAEHAETVCEDCGLVVEEGEIDRGPEWRAFDAAEKD--EKSRVGAPTTNMMHDQGLS 95
Query: 75 TMIGPGRGDA---SFDGFGMSKYQNRRTMN-------SSDRALLNAIREINSMADRINLT 124
T IG DA S K Q RT N S +R L A+ EI+ MA + L
Sbjct: 96 TNIGWQDKDAYGRSLSSRQRQKMQRLRTWNERFRTRDSKERNLKQALGEIDRMASALGLP 155
Query: 125 KTIVDRANNLFKQVHD-----GKN------------------------LKGRSNDAIASA 155
+ + + A+ ++++ + G++ L GRS + +A+A
Sbjct: 156 ENVRETASVIYRRALEEDLLPGRSIEGVATASLYASSVIYRRALEEDLLPGRSIEGVATA 215
Query: 156 CLYIACRQEGVPRTFKEICAVSKISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNL 215
LY + RQ G PR+ EI AVS++ K E+ R ++ +++ L V ++ RF S+L
Sbjct: 216 SLYASARQAGTPRSLDEISAVSRVEKDEVARTYRYVIRELGLEVKPADPESYVPRFASDL 275
Query: 216 SLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAE 275
L + ++ A + A + I G+SP+ +AAAA+Y A+ +++K +Q ++ ++A ++E
Sbjct: 276 ELSDETERRARSLLSTAKDRGIHSGKSPVGLAAAAVYAAALLTNEKVTQNDVSEVASISE 335
Query: 276 VTIRQSY 282
VTIR Y
Sbjct: 336 VTIRNRY 342
>gi|448417415|ref|ZP_21579351.1| transcription initiation factor iib (tfiib) [Halosarcina pallida
JCM 14848]
gi|445677903|gb|ELZ30399.1| transcription initiation factor iib (tfiib) [Halosarcina pallida
JCM 14848]
Length = 296
Score = 133 bits (335), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 83/263 (31%), Positives = 133/263 (50%), Gaps = 6/263 (2%)
Query: 24 DQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLSTMIGPG--- 80
+ +C +CGLVV + ID G EWR+F+++ S DP R G P + LST IG
Sbjct: 28 ETVCGDCGLVVSEYAIDHGPEWRSFADDAS--DPKRTGAPLTRSRHDRGLSTEIGRSTRL 85
Query: 81 RGDASFDGFGMSKYQNR-RTMNSSDRALLNAIREINSMADRINLTKTIVDRANNLFKQVH 139
+G + + NR R +R + A EI +A ++L + I D A +LF+
Sbjct: 86 KGRKRRQMARLRRQHNRARISTKRERNQVYAFTEIRRLASALSLPERIRDHACSLFRSAQ 145
Query: 140 DGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGRCFKLILKALETSV 199
L+GRS + A+AC+Y ACR V RT E+ A +K ++ E + + + L V
Sbjct: 146 KEDLLRGRSLEGFAAACVYAACRAANVSRTVGEVVAEAKATRAEQTAAYDALNRELGLPV 205
Query: 200 DLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASS 259
+ +++ RF + L L ++ A +AV+ I GR+P VAA +Y A++ +
Sbjct: 206 GPVDPAEYVPRFATRLDLSREAERRAREYVAQAVDAGISTGRNPGGVAAGCLYTAARDLN 265
Query: 260 DKRSQKEIGDIAGVAEVTIRQSY 282
+Q E +A V VT+R++Y
Sbjct: 266 ADVTQAEAAAVADVTPVTLRKTY 288
>gi|448407123|ref|ZP_21573550.1| transcription initiation factor IIB [Halosimplex carlsbadense
2-9-1]
gi|445676336|gb|ELZ28859.1| transcription initiation factor IIB [Halosimplex carlsbadense
2-9-1]
Length = 288
Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 84/266 (31%), Positives = 134/266 (50%), Gaps = 6/266 (2%)
Query: 24 DQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLSTMIGPG--- 80
+ +C+ CGLVV + ID G EWR+F ++++ + R G P + LST IG
Sbjct: 21 ETVCASCGLVVAEDNIDHGPEWRSFEDDETNRE--RTGAPLTRSRHDRGLSTEIGRSTRL 78
Query: 81 RGDASFDGFGMSKYQNRRTMNS-SDRALLNAIREINSMADRINLTKTIVDRANNLFKQVH 139
+G M + NR + S ++R + EI + + L+ I DRA LF+
Sbjct: 79 KGRKRRRMARMRRQHNRTKIGSKAERNQVYGFTEIRRLVSALGLSDHIRDRACVLFESAQ 138
Query: 140 DGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGRCFKLILKALETSV 199
D L+GRS + A+A +Y CR V RT E+ A ++ SK E+ + + + L
Sbjct: 139 DEDLLRGRSLEGFAAATVYATCRTAEVSRTIDEVVADARASKAELSAAYDALNRDLGLPT 198
Query: 200 DLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASS 259
I ++++RF S+L LP ++ A + + EL+ V GR+P VAA +Y A+ S
Sbjct: 199 GPIDPAEYLARFASDLDLPQGLEGRARELVERTRELNHVDGRNPAGVAAGCLYTAADERS 258
Query: 260 DKRSQKEIGDIAGVAEVTIRQSYKLM 285
+Q E D A V VT+R +Y+ +
Sbjct: 259 YPLTQAEAADAADVTPVTLRATYQAL 284
>gi|448732431|ref|ZP_21714711.1| transcription initiation factor IIB [Halococcus salifodinae DSM
8989]
gi|445804689|gb|EMA54922.1| transcription initiation factor IIB [Halococcus salifodinae DSM
8989]
Length = 283
Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 83/267 (31%), Positives = 133/267 (49%), Gaps = 10/267 (3%)
Query: 24 DQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLSTMIG----- 78
+ +C++CGLVV ID G EWR+F E R G P + LST IG
Sbjct: 20 ETVCTKCGLVVAVDEIDRGPEWRSFERETR----KRTGAPLTRSRHDRGLSTEIGRSTRL 75
Query: 79 PGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADRINLTKTIVDRANNLFKQV 138
GR F ++ R + ++R + A EI + L+ ++ DRA LF+
Sbjct: 76 TGRKRRLFARL-RRQHTRSRIASKAERNRVYAFTEIRRQVCALGLSDSVRDRACVLFESA 134
Query: 139 HDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGRCFKLILKALETS 198
D L+GRS + A+A +Y CR +GV RT EI V+K S+ E+ + + + L
Sbjct: 135 QDADLLRGRSLEGFAAATIYAVCRTDGVSRTLAEIVTVAKASRDELTAAYDALNRDLGLP 194
Query: 199 VDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQAS 258
I ++++RF S L LP+ V+ A + + + +V GR+P VAAA +Y A+ +
Sbjct: 195 TGPIDPSEYLARFASQLDLPHGVEARARELVAEGRDRGLVSGRNPSGVAAACLYTAATET 254
Query: 259 SDKRSQKEIGDIAGVAEVTIRQSYKLM 285
+Q+ ++A V VT+R +Y+ +
Sbjct: 255 DHGLTQQAAAEVADVTPVTLRATYQAL 281
>gi|385804962|ref|YP_005841362.1| transcription initiation factor TFB [Haloquadratum walsbyi C23]
gi|339730454|emb|CCC41793.1| transcription initiation factor TFB [Haloquadratum walsbyi C23]
Length = 314
Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 86/265 (32%), Positives = 133/265 (50%), Gaps = 10/265 (3%)
Query: 24 DQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLSTMIG----- 78
+ IC +CGLV+ + ID G EWR+F+++ + +P R G P + LST IG
Sbjct: 42 ETICGDCGLVLSEYRIDHGPEWRSFADDTT--NPKRTGAPLTRSRHDRGLSTEIGRSIRL 99
Query: 79 PGRGDASFDGFGMSKYQNR-RTMNSSDRALLNAIREINSMADRINLTKTIVDRANNLFKQ 137
GR F + + NR R +R + A EI + ++L K I D A +LF+
Sbjct: 100 TGRKRRQF--ARLRRQHNRARISTKRERNQVYAFTEIRRLTGALSLPKQIRDDACSLFRS 157
Query: 138 VHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGRCFKLILKALET 197
L+GRS + A+AC+Y ACR GV RT +EI ++K + E + + + L
Sbjct: 158 AQSEDLLRGRSLEGFAAACVYAACRVAGVARTIEEITDIAKATSAEQRAAYTALNRELGL 217
Query: 198 SVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQA 257
+ I ++ RF S L LP+ +++ A I GR+P VAAA +Y A++
Sbjct: 218 PIGPIDPAQYLPRFASELELPSDIERRACEYISMITAQGIGAGRNPSGVAAACLYTAARD 277
Query: 258 SSDKRSQKEIGDIAGVAEVTIRQSY 282
+ +Q+ DIA V VT+R +Y
Sbjct: 278 IGFELTQQTAADIADVTPVTLRATY 302
>gi|390370561|ref|XP_796144.3| PREDICTED: transcription initiation factor IIB-like
[Strongylocentrotus purpuratus]
Length = 102
Score = 132 bits (333), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 63/100 (63%), Positives = 77/100 (77%)
Query: 3 INKVCCYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGG 62
++KVCC HP A LIED AGD IC ECGLVV DRVIDVGSEWRTFSN+K+ +DPSRVG
Sbjct: 1 MHKVCCPSHPHANLIEDSHAGDLICPECGLVVADRVIDVGSEWRTFSNDKANIDPSRVGA 60
Query: 63 PENPLLNGSDLSTMIGPGRGDASFDGFGMSKYQNRRTMNS 102
ENPLL G+DLST+IG G+ASF+ G KY+++ + +
Sbjct: 61 AENPLLEGNDLSTIIGGVLGNASFNEDGSKKYRSKSNVGT 100
>gi|448730615|ref|ZP_21712921.1| transcription initiation factor IIB [Halococcus saccharolyticus DSM
5350]
gi|445793284|gb|EMA43867.1| transcription initiation factor IIB [Halococcus saccharolyticus DSM
5350]
Length = 283
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 84/267 (31%), Positives = 131/267 (49%), Gaps = 10/267 (3%)
Query: 24 DQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLSTMIG----- 78
+ C ECGLVV ID G EWR+F E R G P + LST IG
Sbjct: 20 ETACDECGLVVAADEIDRGPEWRSFERETR----KRTGAPLTRSRHDRGLSTEIGRSTRL 75
Query: 79 PGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADRINLTKTIVDRANNLFKQV 138
GR F ++ R + ++R + A EI + L+ ++ DRA LF+
Sbjct: 76 TGRKRRLFARL-RRQHSRSRIASKAERNKVYAFTEIRRQVCALGLSDSVRDRACVLFESA 134
Query: 139 HDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGRCFKLILKALETS 198
D L+GRS + A+A +Y CR +GV RT EI V+K S+ E+ + + + L
Sbjct: 135 QDADLLRGRSLEGFAAATIYAVCRTDGVSRTLAEIVTVAKASRDELTAAYDALNRDLGLP 194
Query: 199 VDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQAS 258
I ++++RF S L LP+ V+ A + + + +V GR+P VAAA +Y A+ +
Sbjct: 195 TGPIDPTEYLARFASQLGLPHGVEARARELVAEGRDRGLVSGRNPSGVAAACLYTAATET 254
Query: 259 SDKRSQKEIGDIAGVAEVTIRQSYKLM 285
+Q+ ++A V VT+R +Y+ +
Sbjct: 255 GHGLTQQAAAEVADVTPVTLRATYQEL 281
>gi|448474119|ref|ZP_21602087.1| transcription factor TFIIB cyclin-related protein [Halorubrum
aidingense JCM 13560]
gi|445818399|gb|EMA68258.1| transcription factor TFIIB cyclin-related protein [Halorubrum
aidingense JCM 13560]
Length = 380
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 98/331 (29%), Positives = 156/331 (47%), Gaps = 74/331 (22%)
Query: 26 ICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLSTMI------GP 79
+C +CGLV+ +R ID G EWR F N SRVG P ++ L+T I
Sbjct: 42 VCEDCGLVLDERNIDRGPEWRAF-NHSERQSKSRVGAPITETMHDKGLTTTIDWKDKDAY 100
Query: 80 GRG------------------------------------DASFDGFGMSKYQNR-RTMNS 102
GR D + K+Q R RT ++
Sbjct: 101 GRSLSSEKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDRMASALRLRKWQERIRTKDA 160
Query: 103 SDRALLNAIREINSMADRINLTKTIVDRANNLFKQVHD-----GKNL------------- 144
+R L A+ EI+ MA + + +++ + A+ ++++ + G+++
Sbjct: 161 GERNLQFALSEIDRMASALGVPRSVREVASVIYRRALNEDLIRGRSIEGVSTAALYAACR 220
Query: 145 ------------KGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGRCFKLIL 192
+GRS + +++A LY ACRQEG+PR+ E+ VS++ +KEIGR ++ I
Sbjct: 221 VIYRRALNEDLIRGRSIEGVSTAALYAACRQEGIPRSLDEVADVSRVPQKEIGRTYRYIS 280
Query: 193 KALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIY 252
+ L + + F+ RF S L L VQ AT I + E ++ G+SP AAAAIY
Sbjct: 281 QELGLELKPVDPKQFVPRFASALQLSEEVQSKATEIIDVSAEQGLLSGKSPTGFAAAAIY 340
Query: 253 MASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
AS ++K++Q+E+ D+A V EVTIR Y+
Sbjct: 341 AASLLCNEKKTQREVADVAQVTEVTIRNRYQ 371
>gi|448455066|ref|ZP_21594392.1| Zinc finger TFIIB-type domain protein [Halorubrum lipolyticum DSM
21995]
gi|445814181|gb|EMA64149.1| Zinc finger TFIIB-type domain protein [Halorubrum lipolyticum DSM
21995]
Length = 333
Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 96/293 (32%), Positives = 155/293 (52%), Gaps = 21/293 (7%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTF-SNEKSGVDPSRVGGPENPLLNGSDLS 74
L+ D G+ +C++CGLVV +D G EWR F S+E+ SRVG P +++ LS
Sbjct: 46 LVTDTEHGETVCNDCGLVVEQDSVDRGPEWRAFDSSERDS--KSRVGAPTTNMMHDKGLS 103
Query: 75 TMIGPGRGDASFDGFGMS-------------KYQNR-RTMNSSDRALLNAIREINSMADR 120
T IG DA +G S + R RT +S DR L A+ EI+ MA
Sbjct: 104 TNIGWQDKDA----YGKSLSSRQRQRMQRLRTWNERFRTRDSKDRNLKQALGEIDRMASA 159
Query: 121 INLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKIS 180
+ L + + A+ ++++ L GRS + +A+A LY A RQ+G PR+ E AVS++
Sbjct: 160 LGLPDNVRETASVIYRRALSENLLPGRSIEGVATAALYAAARQDGNPRSLDEFTAVSRVD 219
Query: 181 KKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPG 240
K E+ R ++ +++ L+ + ++ RF S L L Q+ A + A I G
Sbjct: 220 KMELTRTYRYVIRELKLEIQPADPESYVPRFVSRLDLSEETQRLARELLDGAKRAGITSG 279
Query: 241 RSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKLF 293
+SP+ +AA+A+Y A+ S++K +Q ++ +A ++EVTIR YK + + L
Sbjct: 280 KSPVGLAASAVYAAALLSNEKVTQSQVSAVADISEVTIRNRYKELLDASEGLV 332
>gi|448528868|ref|ZP_21620248.1| transcription factor TFIIB cyclin-related protein [Halorubrum
hochstenium ATCC 700873]
gi|445710316|gb|ELZ62135.1| transcription factor TFIIB cyclin-related protein [Halorubrum
hochstenium ATCC 700873]
Length = 354
Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 97/280 (34%), Positives = 150/280 (53%), Gaps = 11/280 (3%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLST 75
L D G+ +CS+CGLVV + +D G EWR F N SRVG P +++ LST
Sbjct: 67 LASDTEHGETVCSDCGLVVEEDSVDRGPEWRAF-NSGERDSKSRVGAPTTNMMHDKGLST 125
Query: 76 MIGPGRGDA---SFDGFGMSK------YQNR-RTMNSSDRALLNAIREINSMADRINLTK 125
IG DA S G + + R RT +S +R L A+ EI+ MA + L
Sbjct: 126 NIGWQDKDAYGKSLSGRQRRRMQRLRTWNERFRTRDSKERNLKQALGEIDRMASALGLPD 185
Query: 126 TIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIG 185
+ + A+ ++++ L GRS + +A+A LY A RQ G PR+ E AVS++ K E+
Sbjct: 186 NVRETASVIYRRALSENLLPGRSIEGVATAALYAAARQVGNPRSLDEFTAVSRVEKMELT 245
Query: 186 RCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPIS 245
R ++ +++ L V ++ RF S L L + ++ A + A I G+SP+
Sbjct: 246 RTYRYVVRELGLRVQPADPTSYVPRFVSRLDLSDETERRARELLADAASAGITSGKSPVG 305
Query: 246 VAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLM 285
+AAAA+Y A+ S++K +Q ++ D+A V+EVTIR YK +
Sbjct: 306 LAAAAVYAAALLSNEKVTQSQVSDVADVSEVTIRNRYKEL 345
>gi|448726015|ref|ZP_21708442.1| Transcription factor TFIIB cyclin-related protein [Halococcus
morrhuae DSM 1307]
gi|445797034|gb|EMA47518.1| Transcription factor TFIIB cyclin-related protein [Halococcus
morrhuae DSM 1307]
Length = 334
Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 86/277 (31%), Positives = 142/277 (51%), Gaps = 11/277 (3%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLST 75
L ED G+ C+ECGLVV ID G EWR F + + R G P +++ LS+
Sbjct: 39 LAEDEAHGETTCTECGLVVSTDEIDHGPEWRAFDSAERDR-KKRTGAPTTKMMHDKGLSS 97
Query: 76 MIGPGRGDASFDGFGMSKYQNR----------RTMNSSDRALLNAIREINSMADRINLTK 125
IG DA + K Q RT +S +R L A+ EI MA + + K
Sbjct: 98 QIGWQNKDAYGNTLSARKRQRMQRLRTWDERFRTRDSKERNLKQALGEIERMASALGVPK 157
Query: 126 TIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIG 185
+ + A+ ++++ L GRS + +++A LY RQ G+PR+ +E+ AVS++ + E
Sbjct: 158 DVRETASVIYRRALSEDLLPGRSIEGVSTAALYAGIRQMGLPRSVEEVGAVSRVDEMEFK 217
Query: 186 RCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPIS 245
R ++ I + L+ + ++SRF S+L + ++ A + A + G+SP+
Sbjct: 218 RAYRYINQELDLEIGPPNPKQYVSRFASDLDVSEETERRARDLLETAERQAVHSGKSPVG 277
Query: 246 VAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSY 282
+A AA+Y A ++ K +Q E+ ++A V+ VTIR Y
Sbjct: 278 LAGAALYAAGILTNRKLTQDEVSEVAEVSNVTIRNRY 314
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 47/78 (60%)
Query: 208 MSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEI 267
+ R S L +P V++ A+ I R+A+ D++PGRS V+ AA+Y + RS +E+
Sbjct: 146 IERMASALGVPKDVRETASVIYRRALSEDLLPGRSIEGVSTAALYAGIRQMGLPRSVEEV 205
Query: 268 GDIAGVAEVTIRQSYKLM 285
G ++ V E+ +++Y+ +
Sbjct: 206 GAVSRVDEMEFKRAYRYI 223
>gi|257387108|ref|YP_003176881.1| transcription factor TFIIB cyclin-related protein [Halomicrobium
mukohataei DSM 12286]
gi|257169415|gb|ACV47174.1| Transcription factor TFIIB cyclin-related [Halomicrobium mukohataei
DSM 12286]
Length = 286
Score = 131 bits (330), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 85/276 (30%), Positives = 139/276 (50%), Gaps = 16/276 (5%)
Query: 19 DYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLSTMIG 78
D A + +C++CGLVV + +D G EWR+F E G +R G P + LST IG
Sbjct: 16 DASAREAVCTQCGLVVDEDQLDRGPEWRSF--EDDGEQKARTGAPLTRSRHDRGLSTEIG 73
Query: 79 PGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIR---------EINSMADRINLTKTIVD 129
S G + Q R RA + R EI + R++L+ TI D
Sbjct: 74 R-----STRLKGRKRRQMARLRREHSRAQTGSKRDRNQRIGFIEIRRLVSRLDLSSTIRD 128
Query: 130 RANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGRCFK 189
RA LF+ + L GRS + A+A +Y CR + RT +E+ A ++ S E+ +
Sbjct: 129 RACVLFESAQEADLLVGRSIEGFAAAAVYATCRTSEIARTVEEVAADAQASTGELRVAYD 188
Query: 190 LILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAA 249
I + L I +++ RF S L +P+ +++ AT +A A E +++ G++P VAAA
Sbjct: 189 AINRELGLPTGPIDPREYLPRFASELDVPHEIERRATALADLAAERNLIAGKNPGGVAAA 248
Query: 250 AIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLM 285
+Y A++ + + +Q +A V+ VT+R +Y+ +
Sbjct: 249 CLYTAAREADYELTQARAAAVADVSPVTLRSTYQAL 284
>gi|452208175|ref|YP_007488297.1| transcription initiation factor TFB [Natronomonas moolapensis
8.8.11]
gi|452084275|emb|CCQ37614.1| transcription initiation factor TFB [Natronomonas moolapensis
8.8.11]
Length = 287
Score = 131 bits (330), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 85/264 (32%), Positives = 140/264 (53%), Gaps = 6/264 (2%)
Query: 24 DQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLSTMIGPG--- 80
+ IC+ECGLVV + +D G EWR+F ++++ +P R G P + LST IG
Sbjct: 22 ETICTECGLVVAEDELDRGPEWRSFDDDET--NPERCGAPLTRSRHDRGLSTEIGRSTRL 79
Query: 81 RGDASFDGFGMSKYQNR-RTMNSSDRALLNAIREINSMADRINLTKTIVDRANNLFKQVH 139
+G M K+ R R + R ++ EI + ++ L + + DR+ F+
Sbjct: 80 KGRKRRQVARMRKHHKRARIPSKRARNRIHGFTEIRRLVGQLELPEDLRDRSCVRFESAQ 139
Query: 140 DGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGRCFKLILKALETSV 199
L+GR + A+A +Y CR V RT +EI AV+ E+ + + +AL+
Sbjct: 140 KADLLQGRCIEGFAAASVYATCRTASVSRTLEEIVAVASADADELKVAYGALNRALDLPT 199
Query: 200 DLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASS 259
I ++++RF S L +P V++AA +AR+A E + GR+P VAAA +Y A++
Sbjct: 200 GPIDPAEYLARFASKLDVPTDVERAARRLAREAHESGLATGRNPSGVAAACLYTAARRDG 259
Query: 260 DKRSQKEIGDIAGVAEVTIRQSYK 283
+Q+E D+AGV+ VT+R +Y+
Sbjct: 260 HDLTQREASDVAGVSAVTVRNTYQ 283
>gi|167533145|ref|XP_001748253.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163773373|gb|EDQ87014.1| predicted protein [Monosiga brevicollis MX1]
Length = 392
Score = 131 bits (329), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 91/296 (30%), Positives = 153/296 (51%), Gaps = 24/296 (8%)
Query: 11 HPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNE---KSGVDPSRVGGPENPL 67
HPD+ I+ G +CS CG + + VID G+EWR F N KS DPSRVG E+ L
Sbjct: 2 HPDSIPIQS--EGFVVCSSCGRALAE-VIDQGTEWRNFGNSDKNKSNADPSRVGAAEDKL 58
Query: 68 LNGSDLSTMIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADRINLTKT- 126
LSTM+G + + + +++Q+R T ++ + L I ++A RI L +
Sbjct: 59 YQDGQLSTMVGHSKVELPW-----AQWQHR-TQATNQKTLSKVYGMIQTLASRIGLESSH 112
Query: 127 IVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGR 186
+V A + K V RS++ IA+ACL++ACR V + + I + +S++++ R
Sbjct: 113 VVREAKHYCKTVLTVGTRTSRSHEYIAAACLFLACRNNNVAKPARVIATYANLSERDLLR 172
Query: 187 CFKLILKALETSVDL-ITTG-----DFMSRFCSNLSLPNMVQ-KAATHIARKAVELDIVP 239
+ + LE ++ I G +F+ C+ L L N+ + H+ RK L ++
Sbjct: 173 TSRNLTPILEEHDEVGIMVGSADPAEFLPNICAELKLRNVASVRHIVHVVRKV--LHLLD 230
Query: 240 GRSPISVAAAAI--YMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKLF 293
G+ P +VAA + Y+ + SS ++ +GD G +E I+ +Y+ +YP + LF
Sbjct: 231 GKKPDTVAAVCVYYYLLGRGSSSAKALVAVGDATGASEAAIKGAYRELYPVRAYLF 286
>gi|448321391|ref|ZP_21510871.1| transcription factor TFIIB cyclin-like protein [Natronococcus
amylolyticus DSM 10524]
gi|445604251|gb|ELY58202.1| transcription factor TFIIB cyclin-like protein [Natronococcus
amylolyticus DSM 10524]
Length = 325
Score = 130 bits (328), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 96/290 (33%), Positives = 157/290 (54%), Gaps = 13/290 (4%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTF-SNEKSGVDPSRVGGPENPLLNGSDLS 74
+I D + +C +CGLVV + ID G EWR F + EK + SRVG P +++ LS
Sbjct: 37 VISDTEHAETVCQDCGLVVEEDEIDRGPEWRAFDAAEKD--EKSRVGAPTTNMMHDQGLS 94
Query: 75 TMIGPGRGDA---SFDGFGMSKYQNRRTMN-------SSDRALLNAIREINSMADRINLT 124
T IG DA S K Q RT N S +R L A+ EI+ MA + L
Sbjct: 95 TNIGWQDKDAYGRSLSSRQRQKMQRLRTWNERFRTRDSKERNLKQALGEIDRMASALGLP 154
Query: 125 KTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEI 184
+ + + A+ ++++ + L GRS + +A+A LY A RQ G PR+ EI AVS++ K E+
Sbjct: 155 ENVRETASVIYRRALEEDLLPGRSIEGVATAALYAAARQAGTPRSLDEISAVSRVDKMEL 214
Query: 185 GRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPI 244
R ++ +++ L V ++ RF S+L L + ++ A + A + + G+SP+
Sbjct: 215 TRTYRYVIRELGLEVQPADPEHYVPRFVSDLDLSDETERMARDLLESARQEGVHSGKSPV 274
Query: 245 SVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKLFP 294
+AAAA+Y A+ +++K +Q ++ ++A ++EVTIR YK + + P
Sbjct: 275 GLAAAAVYAAALLTNEKVTQNDVSEVASISEVTIRNRYKELLEASDSAAP 324
>gi|269867074|ref|XP_002652480.1| transcription initiation factor IIB [Enterocytozoon bieneusi H348]
gi|220062405|gb|EED41577.1| transcription initiation factor IIB [Enterocytozoon bieneusi H348]
Length = 158
Score = 130 bits (328), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 64/147 (43%), Positives = 96/147 (65%), Gaps = 1/147 (0%)
Query: 100 MNSSDRALLNAIREINSMADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYI 159
M DR L N + I S +R LT+TI+D+A +FK V K LKG++ + AC+YI
Sbjct: 5 MRGPDRVLKNGFKLIQSFCERGFLTQTIIDKAQAIFKDVESKKLLKGKNLEGCIGACIYI 64
Query: 160 ACRQEGVPRTFKEICAVSKISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPN 219
AC+ EG PRTFKEI ++ + K+EIG+C+KLI K ++T+ ++ T D + RFCS+L+L
Sbjct: 65 ACKTEGCPRTFKEISVITVVPKREIGKCYKLISKEIDTT-GIMATADIVGRFCSDLNLNA 123
Query: 220 MVQKAATHIARKAVELDIVPGRSPISV 246
+Q A +IA+K ++ + GRSP S+
Sbjct: 124 KIQNTARYIAKKVQDIGCLAGRSPDSM 150
>gi|55377937|ref|YP_135787.1| transcription initiation factor IIB [Haloarcula marismortui ATCC
43049]
gi|448658471|ref|ZP_21682871.1| transcription initiation factor IIB [Haloarcula californiae ATCC
33799]
gi|55230662|gb|AAV46081.1| transcription initiation factor IIB [Haloarcula marismortui ATCC
43049]
gi|445761196|gb|EMA12445.1| transcription initiation factor IIB [Haloarcula californiae ATCC
33799]
Length = 322
Score = 130 bits (327), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 93/278 (33%), Positives = 149/278 (53%), Gaps = 11/278 (3%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLST 75
++ D G+ +C +CGLVV + ID G EWR F N SRVG P +++ LST
Sbjct: 36 VVTDTEHGETVCEDCGLVVEEDEIDRGPEWRAF-NSAEKDRKSRVGAPTTNMMHDKGLST 94
Query: 76 MIGPGRGDA---SFDGFGMSKYQNRRTMN-------SSDRALLNAIREINSMADRINLTK 125
IG DA S K Q RT N S +R L A+ EI+ MA + L +
Sbjct: 95 NIGWQNKDAYGRSLSSEQRQKMQRLRTWNERFRTRDSKERNLKQALGEIDRMASALGLPQ 154
Query: 126 TIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIG 185
+ + ++ ++++ L GRS + +A+A LY A R G PR+ E+ VS++ K E+
Sbjct: 155 NVRETSSVIYRRALGDDLLPGRSIEGVATAALYAAARMAGNPRSLDEMARVSRVEKMELT 214
Query: 186 RCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPIS 245
R ++ I++ L V ++ RF S+L L Q+ A + A + ++ G+SP+
Sbjct: 215 RTYRYIVRELSLEVQPADPEHYLPRFISDLDLSEETQRQARDLVEGARQSGMLSGKSPVG 274
Query: 246 VAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
+AAAA+Y A+ +++K +Q ++ D+A ++EVTIR YK
Sbjct: 275 IAAAAVYAAALLTNEKVTQSQVSDVADISEVTIRNRYK 312
>gi|448639408|ref|ZP_21676734.1| transcription initiation factor IIB [Haloarcula sinaiiensis ATCC
33800]
gi|445762687|gb|EMA13905.1| transcription initiation factor IIB [Haloarcula sinaiiensis ATCC
33800]
Length = 322
Score = 130 bits (327), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 93/278 (33%), Positives = 149/278 (53%), Gaps = 11/278 (3%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLST 75
++ D G+ +C +CGLVV + ID G EWR F N SRVG P +++ LST
Sbjct: 36 VVTDTEHGETVCEDCGLVVEEDEIDRGPEWRAF-NSAEKDRKSRVGAPTTNMMHDKGLST 94
Query: 76 MIGPGRGDA---SFDGFGMSKYQNRRTMN-------SSDRALLNAIREINSMADRINLTK 125
IG DA S K Q RT N S +R L A+ EI+ MA + L +
Sbjct: 95 NIGWQNKDAYGRSLSSEQRQKMQRLRTWNERFRTRDSKERNLKQALGEIDRMASALGLPQ 154
Query: 126 TIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIG 185
+ + ++ ++++ L GRS + +A+A LY A R G PR+ E+ VS++ K E+
Sbjct: 155 NVRETSSVIYRRALGDDLLPGRSIEGVATAALYAAARMAGNPRSLDEMARVSRVEKMELT 214
Query: 186 RCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPIS 245
R ++ I++ L V ++ RF S+L L Q+ A + A + ++ G+SP+
Sbjct: 215 RTYRYIVRELSLEVQPADPEHYLPRFISDLDLSEETQRQARDLVEGARQSGMLSGKSPVG 274
Query: 246 VAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
+AAAA+Y A+ +++K +Q ++ D+A ++EVTIR YK
Sbjct: 275 IAAAAVYAAALLTNEKVTQSQVSDVADISEVTIRNRYK 312
>gi|55376477|ref|YP_134329.1| transcription initiation factor IIB [Haloarcula marismortui ATCC
43049]
gi|448690641|ref|ZP_21695802.1| transcription initiation factor IIB [Haloarcula japonica DSM 6131]
gi|55229202|gb|AAV44623.1| transcription initiation factor IIB [Haloarcula marismortui ATCC
43049]
gi|445776603|gb|EMA27580.1| transcription initiation factor IIB [Haloarcula japonica DSM 6131]
Length = 320
Score = 130 bits (327), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 83/274 (30%), Positives = 149/274 (54%), Gaps = 11/274 (4%)
Query: 22 AGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLSTMIGPGR 81
+G+ C CGLV D ID G EWR F++E+ + SRVG P L++ LST IG
Sbjct: 40 SGEATCESCGLVFEDNPIDHGPEWRAFTSEERD-EKSRVGAPTTQLMHDKGLSTTIGWQD 98
Query: 82 GDA---SFDGFGMSKYQNRRTMN-------SSDRALLNAIREINSMADRINLTKTIVDRA 131
DA + G ++ Q RT + + +R L A+ EI+ MA + L +++ + A
Sbjct: 99 KDAYGQAVSGRKRAQLQRLRTWDERFRTKDAHERNLKQALGEISRMASALGLPESVRETA 158
Query: 132 NNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGRCFKLI 191
L+++ + L GRS + +++A LY A RQ G+PR E VS++ K I R ++ +
Sbjct: 159 GVLYRRAVEQNLLPGRSIEGMSTASLYAAARQHGMPRPLTEFADVSRVEKIRIQRAYRYL 218
Query: 192 LKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAI 251
+ L ++ ++ +F S+L + + ++ + + A + + G+SP +AAAA+
Sbjct: 219 SRELGLEIEPEDPMQYIPQFASSLDVSDEAERRSRELLEVATDNAVHSGKSPAGLAAAAL 278
Query: 252 YMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLM 285
Y A+ ++++ +Q+ + ++A V+ VTIR Y+ +
Sbjct: 279 YAATHLTNEQLTQETVSEVAHVSRVTIRNRYQEL 312
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 58/103 (56%), Gaps = 6/103 (5%)
Query: 208 MSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEI 267
+SR S L LP V++ A + R+AVE +++PGRS ++ A++Y A++ R E
Sbjct: 141 ISRMASALGLPESVRETAGVLYRRAVEQNLLPGRSIEGMSTASLYAAARQHGMPRPLTEF 200
Query: 268 GDIAGVAEVTIRQSYKLMYPHAS-KLFPQDFVFHTPIHELPQL 309
D++ V ++ I+++Y+ + ++ P+D P+ +PQ
Sbjct: 201 ADVSRVEKIRIQRAYRYLSRELGLEIEPED-----PMQYIPQF 238
>gi|448412849|ref|ZP_21576740.1| transcription factor TFIIB cyclin-related protein [Halosimplex
carlsbadense 2-9-1]
gi|445667551|gb|ELZ20192.1| transcription factor TFIIB cyclin-related protein [Halosimplex
carlsbadense 2-9-1]
Length = 322
Score = 130 bits (327), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 93/278 (33%), Positives = 154/278 (55%), Gaps = 13/278 (4%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTF-SNEKSGVDPSRVGGPENPLLNGSDLS 74
L+ D G+ +C +CGLVV ID G EWR F ++EK + SRVG P +++ LS
Sbjct: 34 LVVDDERGETVCEDCGLVVETDEIDRGPEWRAFDASEKD--EKSRVGAPTTNMMHDKGLS 91
Query: 75 TMIGPGRGDASFDGFG---------MSKYQNR-RTMNSSDRALLNAIREINSMADRINLT 124
T I DA + + K+ R RT +S +R L A+ EI+ MA + L
Sbjct: 92 TNIDWRDKDAYGNSLSSNQRQKMQRLRKWNERFRTRDSKERNLKQALGEIDRMASALGLP 151
Query: 125 KTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEI 184
+ + + A+ ++++ D L GRS + +++A +Y A RQ GVPR+ EI VS++ K EI
Sbjct: 152 ENVRETASVIYRRALDENLLPGRSIEGVSTAAVYAAARQAGVPRSLDEINEVSRVEKSEI 211
Query: 185 GRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPI 244
R ++ +++ L V ++ RF S+L L + + A + + A E + G+SP+
Sbjct: 212 ARTYRYVIRELGLEVAPADPESYVPRFASSLELSDEAEHRARKLLQNAKEQGVHSGKSPV 271
Query: 245 SVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSY 282
+AAAA+Y A+ +++K +Q + ++A ++EVTIR Y
Sbjct: 272 GLAAAAVYAAALLTNEKTTQAAVSEVADISEVTIRNRY 309
Score = 39.3 bits (90), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 49/78 (62%)
Query: 208 MSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEI 267
+ R S L LP V++ A+ I R+A++ +++PGRS V+ AA+Y A++ + RS EI
Sbjct: 141 IDRMASALGLPENVRETASVIYRRALDENLLPGRSIEGVSTAAVYAAARQAGVPRSLDEI 200
Query: 268 GDIAGVAEVTIRQSYKLM 285
+++ V + I ++Y+ +
Sbjct: 201 NEVSRVEKSEIARTYRYV 218
>gi|242399568|ref|YP_002994993.1| Transcription initiation factor IIB 2 [Thermococcus sibiricus MM
739]
gi|242265962|gb|ACS90644.1| Transcription initiation factor IIB 2 [Thermococcus sibiricus MM
739]
Length = 272
Score = 130 bits (327), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 87/264 (32%), Positives = 141/264 (53%), Gaps = 17/264 (6%)
Query: 33 VVGDRVIDVGSEWRTFS---NEKSGVDPSRVGGPENPLLNGSDLSTMIGPGR-------- 81
++ + ++D+G EWR F EK SRVG PE +L+ LST I
Sbjct: 1 MLDEEIMDLGPEWRAFEPGQREKR----SRVGAPETIMLHDKGLSTDIDWRNRDIHGNDI 56
Query: 82 -GDASFDGFGMSKYQNR-RTMNSSDRALLNAIREINSMADRINLTKTIVDRANNLFKQVH 139
G + + +Q R R ++ DR L A+ E++ M +I L + I + A L+++
Sbjct: 57 SGSTRTKMYRLRMWQRRMRISDAIDRNLAFALSELDRMGSQIGLPRNIREIAALLYRKAV 116
Query: 140 DGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGRCFKLILKALETSV 199
+ ++GRS + + SACLY ACR PRT EI SK+ KKEIGR ++ +++ L +
Sbjct: 117 INRLVRGRSIEGMVSACLYAACRIANAPRTLDEIEDFSKVDKKEIGRSYRYLVRELNLKL 176
Query: 200 DLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASS 259
D++ RF L + ++ A I +A+++ + G+ P +AAAAIY+AS
Sbjct: 177 RPTNPVDYVVRFGDQLGVTEKTKRRAMRIVNQAIKMGLTSGKGPTGIAAAAIYIASLLEG 236
Query: 260 DKRSQKEIGDIAGVAEVTIRQSYK 283
+K +Q+E+ ++A V EVT+R YK
Sbjct: 237 EKMTQREVAEVARVTEVTVRNRYK 260
Score = 40.8 bits (94), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 49/92 (53%), Gaps = 1/92 (1%)
Query: 208 MSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEI 267
+ R S + LP +++ A + RKAV +V GRS + +A +Y A + ++ R+ EI
Sbjct: 91 LDRMGSQIGLPRNIREIAALLYRKAVINRLVRGRSIEGMVSACLYAACRIANAPRTLDEI 150
Query: 268 GDIAGVAEVTIRQSYKLMYPHAS-KLFPQDFV 298
D + V + I +SY+ + + KL P + V
Sbjct: 151 EDFSKVDKKEIGRSYRYLVRELNLKLRPTNPV 182
>gi|399579012|ref|ZP_10772756.1| transcription initiation factor IIB [Halogranum salarium B-1]
gi|399236038|gb|EJN56978.1| transcription initiation factor IIB [Halogranum salarium B-1]
Length = 319
Score = 130 bits (326), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 89/287 (31%), Positives = 144/287 (50%), Gaps = 19/287 (6%)
Query: 13 DAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSD 72
D +++D G+ C ECGLVV + +D G EW+ + N + SRVG P L++
Sbjct: 30 DGKIVQDSEHGESSCEECGLVVDEMQVDRGPEWQAY-NADDRSEKSRVGAPTTQLMHDKG 88
Query: 73 LSTMIGPGRGDASFDGFG-------------MSKYQNR-RTMNSSDRALLNAIREINSMA 118
LST IG + DG+G + + R RT ++ +R L A+ EI MA
Sbjct: 89 LSTTIGW----KNTDGYGKTIPDRKRARLQRLRTWDERFRTKDAHERNLKQALTEIRRMA 144
Query: 119 DRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSK 178
+ L + + A L+++ L GRS + +A+ACLY A RQ G PRT VS+
Sbjct: 145 SALGLPEPPRETAGILYRRAVKDNLLPGRSIEGMATACLYAATRQHGSPRTLTTFADVSR 204
Query: 179 ISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIV 238
+ + I R + + + L ++ ++ +F S+L + + A + A I
Sbjct: 205 VKRLRIQRAYNYLSRELGLQIEPENPSKYVPQFASSLDVSKEATREAHELLEVATANGIH 264
Query: 239 PGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLM 285
G+SP +AAAA+Y AS +++ +QKE+ + A V+ VTIR Y+ +
Sbjct: 265 SGKSPAGLAAAALYAASHLTNEGLTQKEVSNEAHVSRVTIRNRYQEL 311
>gi|374635845|ref|ZP_09707435.1| Transcription factor TFIIB cyclin-related protein [Methanotorris
formicicus Mc-S-70]
gi|373560981|gb|EHP87227.1| Transcription factor TFIIB cyclin-related protein [Methanotorris
formicicus Mc-S-70]
Length = 821
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 74/201 (36%), Positives = 121/201 (60%), Gaps = 1/201 (0%)
Query: 89 FGMSKYQNR-RTMNSSDRALLNAIREINSMADRINLTKTIVDRANNLFKQVHDGKNLKGR 147
+ + K+Q R R ++S+R L A+ E++ +A ++ L + + + A L++ + ++GR
Sbjct: 614 YRLRKWQRRIRVSDASERNLAFALSELDRIASKLGLPRNVRENAAVLYRGAVEKGLIRGR 673
Query: 148 SNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGRCFKLILKALETSVDLITTGDF 207
S + +A+A LY ACR+ VPRT EI S++ +KEIGR ++ + + L + D+
Sbjct: 674 SIEGVAAAALYAACRRCRVPRTLDEISEASRVDRKEIGRTYRFLSRELGIKLAPTNPIDY 733
Query: 208 MSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEI 267
+ RF S L LP V+ A I +KA E + GR P VAAAAIY+AS ++R+Q+++
Sbjct: 734 VPRFASELGLPGEVESKAIAILQKAAEKGLTSGRGPTGVAAAAIYIASVLLGNRRTQRDV 793
Query: 268 GDIAGVAEVTIRQSYKLMYPH 288
++AGV EVTIR YK + H
Sbjct: 794 AEVAGVTEVTIRNRYKELTEH 814
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGP 63
+I DY + +C CG V+ + DVG EWR F +E+ V SRVG P
Sbjct: 53 IIRDYERAEIVCENCGCVLQQNLFDVGPEWRAFDHEQR-VKRSRVGAP 99
>gi|71030250|ref|XP_764767.1| transcription initiation factor TFIIB [Theileria parva strain
Muguga]
gi|68351723|gb|EAN32484.1| transcription initiation factor TFIIB, putative [Theileria parva]
Length = 342
Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 86/298 (28%), Positives = 148/298 (49%), Gaps = 19/298 (6%)
Query: 7 CCYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNE---KSGVDPSRVGGP 63
C + ++ D+ G+Q+C CG V+ + +I EWR F+ E ++G + SRVG
Sbjct: 15 CSTCKDSSTVVVDHVEGNQLCLSCGRVLENVLISEQQEWRNFNTESLGQAGAEKSRVGEL 74
Query: 64 ENPLLNGSDLSTMIGPGRGDASFDGFGMSKYQNRRT-MNSSDRALLNAIREINSMADRIN 122
+ L+G+ +T IG + M QN T +SSDRAL + + ++AD +N
Sbjct: 75 NDVWLDGTSSTTFIGGSKK--------MQHLQNLMTNYDSSDRALKTSFTLLRTIADSLN 126
Query: 123 LTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSK-ISK 181
+ +V+RA + K+++ +L+ R+N A LY+ACR+ V R+ +E+ + ++
Sbjct: 127 IRDQVVERAKEILKELNQMGHLRSRANSLNTLAVLYLACRESSVSRSLRELVIYDRSLTV 186
Query: 182 KEIGRCFKLILKALETSVDLIT--TGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVP 239
KE+GR + K L + T M RFCS L+L N + +A+K+ L +
Sbjct: 187 KELGRAINRLKKVLPNRGNAPTEDVSQLMPRFCSRLNLSNEIMTTCEAVAQKSFVL-LTS 245
Query: 240 GRSPISVAAAAIYMASQ---ASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKLFP 294
S+A IY+ ++ A S +I + G + TI+ +YK + + KL P
Sbjct: 246 AHRTTSLAGGIIYLVTRLFFADDSPISISDISQVCGTSTGTIKTTYKELCLYLDKLIP 303
>gi|409721273|ref|ZP_11269480.1| transcription initiation factor IIB [Halococcus hamelinensis 100A6]
gi|448722199|ref|ZP_21704737.1| transcription initiation factor IIB [Halococcus hamelinensis 100A6]
gi|445789910|gb|EMA40583.1| transcription initiation factor IIB [Halococcus hamelinensis 100A6]
Length = 284
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 87/268 (32%), Positives = 134/268 (50%), Gaps = 12/268 (4%)
Query: 22 AGDQ-ICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLSTMIG-- 78
+GD+ C+ CGLVV ID G EWR+F++ G D R G P + LST IG
Sbjct: 17 SGDETFCTSCGLVVAADNIDRGPEWRSFAD---GPDRKRTGAPLTRSRHDRGLSTEIGRS 73
Query: 79 ---PGRGDASFDGFGMSKYQNR-RTMNSSDRALLNAIREINSMADRINLTKTIVDRANNL 134
GR F + + NR R + ++R + A EI + + L +T+ DRA L
Sbjct: 74 IRLTGRKRRLF--ARLRRQHNRARIASKAERNRVYAFTEIRRLVGALGLPETVRDRACVL 131
Query: 135 FKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGRCFKLILKA 194
F+ + L+GRS + A+A +Y CR EG+ RT E+ +K S+ E+ + + +
Sbjct: 132 FESAQNEDLLRGRSLEGFAAAAVYAVCRTEGLSRTIAEVRDAAKASRGELVAAYDALNRE 191
Query: 195 LETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMA 254
L I +++ RF S L + V+ A + +A L GR+P VAAA +Y A
Sbjct: 192 LGLPTGPIDPAEYLPRFASLLDVSTAVEARAHELVDEAESLGATSGRNPSGVAAACLYTA 251
Query: 255 SQASSDKRSQKEIGDIAGVAEVTIRQSY 282
++ +Q+ D+AGV VT+R +Y
Sbjct: 252 ARELDGSLTQQAAADVAGVTPVTLRATY 279
>gi|336253520|ref|YP_004596627.1| transcription initiation factor IIB [Halopiger xanaduensis SH-6]
gi|335337509|gb|AEH36748.1| Transcription initiation factor IIB [Halopiger xanaduensis SH-6]
Length = 332
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 91/288 (31%), Positives = 148/288 (51%), Gaps = 15/288 (5%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLST 75
++ D G+ C+ECGLV+ +D G EWR +E + + RVG P + LST
Sbjct: 44 IVHDAEHGEHACAECGLVLDADELDYGPEWRAGDDEDAD-ERRRVGAPLTERRHDKGLST 102
Query: 76 MIGPGRGDA---SFDGFGMSKYQNRRTMN-------SSDRALLNAIREINSMADRINLTK 125
IG DA S+ + RT N + +R L +A E+ MA ++L +
Sbjct: 103 TIGWRNQDAYGNELSARKRSQLRRLRTWNERFTAKTAQERNLKHAFGELERMASALDLPE 162
Query: 126 TIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIG 185
+ A L+++ D + L GRS +A+A+ACLY A RQ G PRT+ +VS++ +
Sbjct: 163 PCRETAAVLYRRAVDEELLPGRSIEAMATACLYAAARQHGTPRTWATFESVSRVEIGRVQ 222
Query: 186 RCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPIS 245
R ++ + + L + ++ +F S LS+ + + A I A E I G+SP
Sbjct: 223 RAYRYLSRELGLEIAPADPLQYLGQFASALSISDEAEHVAREILETAKEKGIHVGKSPAG 282
Query: 246 VAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMY----PHA 289
+AA+AIY A++ ++++ +QK I + GV+E TIR Y+ + PHA
Sbjct: 283 LAASAIYAAARLTNERVTQKTIDEQTGVSEFTIRNRYQELLDAYGPHA 330
>gi|448439566|ref|ZP_21588130.1| Zinc finger TFIIB-type domain protein [Halorubrum saccharovorum DSM
1137]
gi|445691100|gb|ELZ43295.1| Zinc finger TFIIB-type domain protein [Halorubrum saccharovorum DSM
1137]
Length = 333
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 96/292 (32%), Positives = 156/292 (53%), Gaps = 21/292 (7%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTF-SNEKSGVDPSRVGGPENPLLNGSDLS 74
L+ D G+ +C++CGLVV +D G EWR F S+E+ SRVG P +++ LS
Sbjct: 46 LVTDTEHGETVCTDCGLVVEQDSVDRGPEWRAFDSSERDS--KSRVGAPTTNMMHDKGLS 103
Query: 75 TMIGPGRGDASFDGFGMS-------------KYQNR-RTMNSSDRALLNAIREINSMADR 120
T IG DA +G S + R RT +S +R L A+ EI+ MA
Sbjct: 104 TNIGWQDKDA----YGKSLSSRQRQRMQRLRTWNERFRTRDSKERNLKQALGEIDRMASA 159
Query: 121 INLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKIS 180
+ L + + A+ ++++ L GRS + +A+A LY A RQ G PR+ E AVS++
Sbjct: 160 LGLPDNVRETASVIYRRALSENLLPGRSIEGVATAALYAAARQAGNPRSLDEFTAVSRVD 219
Query: 181 KKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPG 240
K E+ R ++ +++ L+ + ++ RF S L L Q+ A + A E I G
Sbjct: 220 KMELTRTYRYVIRELKLEIQPADPESYVPRFVSRLDLSEETQRLARELLDGAKESGITSG 279
Query: 241 RSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKL 292
+SP+ +AA+A+Y A+ S++K +Q ++ ++A ++EVTIR YK + + L
Sbjct: 280 KSPVGLAASAVYAAALLSNEKVTQSQVSEVADISEVTIRNRYKELLDASEGL 331
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.319 0.134 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,676,550,192
Number of Sequences: 23463169
Number of extensions: 185868391
Number of successful extensions: 449783
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 1777
Number of HSP's successfully gapped in prelim test: 269
Number of HSP's that attempted gapping in prelim test: 442428
Number of HSP's gapped (non-prelim): 3253
length of query: 309
length of database: 8,064,228,071
effective HSP length: 142
effective length of query: 167
effective length of database: 9,027,425,369
effective search space: 1507580036623
effective search space used: 1507580036623
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 76 (33.9 bits)