BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6534
(309 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P29052|TF2B_DROME Transcription initiation factor IIB OS=Drosophila melanogaster
GN=TfIIB PE=2 SV=1
Length = 315
Score = 564 bits (1453), Expect = e-160, Method: Compositional matrix adjust.
Identities = 267/309 (86%), Positives = 288/309 (93%)
Query: 1 MNINKVCCYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRV 60
++ NKVCCY HP++PLIEDYRAGD ICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRV
Sbjct: 7 LDNNKVCCYAHPESPLIEDYRAGDMICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRV 66
Query: 61 GGPENPLLNGSDLSTMIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADR 120
GGPENPLL+G DLST+IGPG G ASFD FG KYQNRRTM+SSDR+L++A +EI+SMADR
Sbjct: 67 GGPENPLLSGGDLSTIIGPGTGSASFDAFGAPKYQNRRTMSSSDRSLISAFKEISSMADR 126
Query: 121 INLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKIS 180
INL KTIVDRANNLFKQVHDGKNLKGRSNDA ASACLYIACRQEGVPRTFKEICAVSKIS
Sbjct: 127 INLPKTIVDRANNLFKQVHDGKNLKGRSNDAKASACLYIACRQEGVPRTFKEICAVSKIS 186
Query: 181 KKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPG 240
KKEIGRCFKL LKALETSVDLITT DFM RFC+NL LPNMVQ+AATHIA+KAVE+DIVPG
Sbjct: 187 KKEIGRCFKLTLKALETSVDLITTADFMCRFCANLDLPNMVQRAATHIAKKAVEMDIVPG 246
Query: 241 RSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKLFPQDFVFH 300
RSPISVAAAAIYMASQAS KRSQKEIGDIAGVA+VTIRQSYKLMYPHA+KLFP+DF F
Sbjct: 247 RSPISVAAAAIYMASQASEHKRSQKEIGDIAGVADVTIRQSYKLMYPHAAKLFPEDFKFT 306
Query: 301 TPIHELPQL 309
TPI +LPQ+
Sbjct: 307 TPIDQLPQM 315
>sp|P29054|TF2B_XENLA Transcription initiation factor IIB OS=Xenopus laevis GN=gtf2b PE=2
SV=1
Length = 316
Score = 513 bits (1322), Expect = e-145, Method: Compositional matrix adjust.
Identities = 244/305 (80%), Positives = 272/305 (89%)
Query: 5 KVCCYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPE 64
KV C HPDA L+EDYRAGD ICSECGLVVGDRVIDVGSEWRTFSN+K+ DPSRVG +
Sbjct: 12 KVTCPNHPDALLVEDYRAGDMICSECGLVVGDRVIDVGSEWRTFSNDKAAADPSRVGDAQ 71
Query: 65 NPLLNGSDLSTMIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADRINLT 124
NPLL+G DL+TMIG G G ASFD FG SKYQNRRTM+SSDRA++NA +EI +M+DRINL
Sbjct: 72 NPLLSGGDLTTMIGKGTGSASFDEFGNSKYQNRRTMSSSDRAMMNAFKEITNMSDRINLP 131
Query: 125 KTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEI 184
+ I+DR NNLFKQV++ K+LKGRSNDAIASACLYIACRQEGVPRTFKEICAVS+ISKKEI
Sbjct: 132 RNIIDRTNNLFKQVYEQKSLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSRISKKEI 191
Query: 185 GRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPI 244
GRCFKLILKALET+VDLITTGDFMSRFCSNL L VQ AATHIARKAVELD+VPGRSPI
Sbjct: 192 GRCFKLILKALETNVDLITTGDFMSRFCSNLGLTKQVQMAATHIARKAVELDLVPGRSPI 251
Query: 245 SVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKLFPQDFVFHTPIH 304
SVAAAAIYMASQAS++KR+QKEIGDIAGVA+VTIRQSY+L+YP A LFP DF F TP+
Sbjct: 252 SVAAAAIYMASQASAEKRTQKEIGDIAGVADVTIRQSYRLIYPRAPDLFPADFKFDTPVD 311
Query: 305 ELPQL 309
+LPQL
Sbjct: 312 KLPQL 316
>sp|P62916|TF2B_RAT Transcription initiation factor IIB OS=Rattus norvegicus GN=Gtf2b
PE=2 SV=1
Length = 316
Score = 512 bits (1318), Expect = e-144, Method: Compositional matrix adjust.
Identities = 245/305 (80%), Positives = 271/305 (88%)
Query: 5 KVCCYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPE 64
+V C HPDA L+EDYRAGD IC ECGLVVGDRVIDVGSEWRTFSN+K+ DPSRVG +
Sbjct: 12 RVTCPNHPDAILVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDSQ 71
Query: 65 NPLLNGSDLSTMIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADRINLT 124
NPLL+ DLSTMIG G G ASFD FG SKYQNRRTM+SSDRA++NA +EI +MADRINL
Sbjct: 72 NPLLSDGDLSTMIGKGTGAASFDEFGNSKYQNRRTMSSSDRAMMNAFKEITTMADRINLP 131
Query: 125 KTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEI 184
+ IVDR NNLFKQV++ K+LKGR+NDAIASACLYIACRQEGVPRTFKEICAVS+ISKKEI
Sbjct: 132 RNIVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFKEICAVSRISKKEI 191
Query: 185 GRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPI 244
GRCFKLILKALETSVDLITTGDFMSRFCSNL LP VQ AATHIARKAVELD+VPGRSPI
Sbjct: 192 GRCFKLILKALETSVDLITTGDFMSRFCSNLCLPKQVQMAATHIARKAVELDLVPGRSPI 251
Query: 245 SVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKLFPQDFVFHTPIH 304
SVAAAAIYMASQAS++KR+QKEIGDIAGVA+VTIRQSY+L+YP A LFP DF F TP+
Sbjct: 252 SVAAAAIYMASQASAEKRTQKEIGDIAGVADVTIRQSYRLIYPRAPDLFPSDFKFDTPVD 311
Query: 305 ELPQL 309
+LPQL
Sbjct: 312 KLPQL 316
>sp|P62915|TF2B_MOUSE Transcription initiation factor IIB OS=Mus musculus GN=Gtf2b PE=1
SV=1
Length = 316
Score = 512 bits (1318), Expect = e-144, Method: Compositional matrix adjust.
Identities = 245/305 (80%), Positives = 271/305 (88%)
Query: 5 KVCCYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPE 64
+V C HPDA L+EDYRAGD IC ECGLVVGDRVIDVGSEWRTFSN+K+ DPSRVG +
Sbjct: 12 RVTCPNHPDAILVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDSQ 71
Query: 65 NPLLNGSDLSTMIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADRINLT 124
NPLL+ DLSTMIG G G ASFD FG SKYQNRRTM+SSDRA++NA +EI +MADRINL
Sbjct: 72 NPLLSDGDLSTMIGKGTGAASFDEFGNSKYQNRRTMSSSDRAMMNAFKEITTMADRINLP 131
Query: 125 KTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEI 184
+ IVDR NNLFKQV++ K+LKGR+NDAIASACLYIACRQEGVPRTFKEICAVS+ISKKEI
Sbjct: 132 RNIVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFKEICAVSRISKKEI 191
Query: 185 GRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPI 244
GRCFKLILKALETSVDLITTGDFMSRFCSNL LP VQ AATHIARKAVELD+VPGRSPI
Sbjct: 192 GRCFKLILKALETSVDLITTGDFMSRFCSNLCLPKQVQMAATHIARKAVELDLVPGRSPI 251
Query: 245 SVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKLFPQDFVFHTPIH 304
SVAAAAIYMASQAS++KR+QKEIGDIAGVA+VTIRQSY+L+YP A LFP DF F TP+
Sbjct: 252 SVAAAAIYMASQASAEKRTQKEIGDIAGVADVTIRQSYRLIYPRAPDLFPSDFKFDTPVD 311
Query: 305 ELPQL 309
+LPQL
Sbjct: 312 KLPQL 316
>sp|Q5R886|TF2B_PONAB Transcription initiation factor IIB OS=Pongo abelii GN=GTF2B PE=2
SV=1
Length = 316
Score = 512 bits (1318), Expect = e-144, Method: Compositional matrix adjust.
Identities = 245/305 (80%), Positives = 271/305 (88%)
Query: 5 KVCCYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPE 64
+V C HPDA L+EDYRAGD IC ECGLVVGDRVIDVGSEWRTFSN+K+ DPSRVG +
Sbjct: 12 RVTCPNHPDAILVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDSQ 71
Query: 65 NPLLNGSDLSTMIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADRINLT 124
NPLL+ DLSTMIG G G ASFD FG SKYQNRRTM+SSDRA++NA +EI +MADRINL
Sbjct: 72 NPLLSDGDLSTMIGKGTGAASFDEFGNSKYQNRRTMSSSDRAMMNAFKEITTMADRINLP 131
Query: 125 KTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEI 184
+ IVDR NNLFKQV++ K+LKGR+NDAIASACLYIACRQEGVPRTFKEICAVS+ISKKEI
Sbjct: 132 RNIVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFKEICAVSRISKKEI 191
Query: 185 GRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPI 244
GRCFKLILKALETSVDLITTGDFMSRFCSNL LP VQ AATHIARKAVELD+VPGRSPI
Sbjct: 192 GRCFKLILKALETSVDLITTGDFMSRFCSNLCLPKQVQMAATHIARKAVELDLVPGRSPI 251
Query: 245 SVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKLFPQDFVFHTPIH 304
SVAAAAIYMASQAS++KR+QKEIGDIAGVA+VTIRQSY+L+YP A LFP DF F TP+
Sbjct: 252 SVAAAAIYMASQASAEKRTQKEIGDIAGVADVTIRQSYRLIYPRAPDLFPTDFKFDTPVD 311
Query: 305 ELPQL 309
+LPQL
Sbjct: 312 KLPQL 316
>sp|Q4R3J5|TF2B_MACFA Transcription initiation factor IIB OS=Macaca fascicularis GN=GTF2B
PE=2 SV=1
Length = 316
Score = 512 bits (1318), Expect = e-144, Method: Compositional matrix adjust.
Identities = 245/305 (80%), Positives = 271/305 (88%)
Query: 5 KVCCYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPE 64
+V C HPDA L+EDYRAGD IC ECGLVVGDRVIDVGSEWRTFSN+K+ DPSRVG +
Sbjct: 12 RVTCPNHPDAILVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDSQ 71
Query: 65 NPLLNGSDLSTMIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADRINLT 124
NPLL+ DLSTMIG G G ASFD FG SKYQNRRTM+SSDRA++NA +EI +MADRINL
Sbjct: 72 NPLLSDGDLSTMIGKGTGAASFDEFGNSKYQNRRTMSSSDRAMMNAFKEITTMADRINLP 131
Query: 125 KTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEI 184
+ IVDR NNLFKQV++ K+LKGR+NDAIASACLYIACRQEGVPRTFKEICAVS+ISKKEI
Sbjct: 132 RNIVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFKEICAVSRISKKEI 191
Query: 185 GRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPI 244
GRCFKLILKALETSVDLITTGDFMSRFCSNL LP VQ AATHIARKAVELD+VPGRSPI
Sbjct: 192 GRCFKLILKALETSVDLITTGDFMSRFCSNLCLPKQVQMAATHIARKAVELDLVPGRSPI 251
Query: 245 SVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKLFPQDFVFHTPIH 304
SVAAAAIYMASQAS++KR+QKEIGDIAGVA+VTIRQSY+L+YP A LFP DF F TP+
Sbjct: 252 SVAAAAIYMASQASAEKRTQKEIGDIAGVADVTIRQSYRLIYPRAPDLFPTDFKFDTPVD 311
Query: 305 ELPQL 309
+LPQL
Sbjct: 312 KLPQL 316
>sp|Q00403|TF2B_HUMAN Transcription initiation factor IIB OS=Homo sapiens GN=GTF2B PE=1
SV=1
Length = 316
Score = 512 bits (1318), Expect = e-144, Method: Compositional matrix adjust.
Identities = 245/305 (80%), Positives = 271/305 (88%)
Query: 5 KVCCYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPE 64
+V C HPDA L+EDYRAGD IC ECGLVVGDRVIDVGSEWRTFSN+K+ DPSRVG +
Sbjct: 12 RVTCPNHPDAILVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDSQ 71
Query: 65 NPLLNGSDLSTMIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADRINLT 124
NPLL+ DLSTMIG G G ASFD FG SKYQNRRTM+SSDRA++NA +EI +MADRINL
Sbjct: 72 NPLLSDGDLSTMIGKGTGAASFDEFGNSKYQNRRTMSSSDRAMMNAFKEITTMADRINLP 131
Query: 125 KTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEI 184
+ IVDR NNLFKQV++ K+LKGR+NDAIASACLYIACRQEGVPRTFKEICAVS+ISKKEI
Sbjct: 132 RNIVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFKEICAVSRISKKEI 191
Query: 185 GRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPI 244
GRCFKLILKALETSVDLITTGDFMSRFCSNL LP VQ AATHIARKAVELD+VPGRSPI
Sbjct: 192 GRCFKLILKALETSVDLITTGDFMSRFCSNLCLPKQVQMAATHIARKAVELDLVPGRSPI 251
Query: 245 SVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKLFPQDFVFHTPIH 304
SVAAAAIYMASQAS++KR+QKEIGDIAGVA+VTIRQSY+L+YP A LFP DF F TP+
Sbjct: 252 SVAAAAIYMASQASAEKRTQKEIGDIAGVADVTIRQSYRLIYPRAPDLFPTDFKFDTPVD 311
Query: 305 ELPQL 309
+LPQL
Sbjct: 312 KLPQL 316
>sp|Q2KIN8|TF2B_BOVIN Transcription initiation factor IIB OS=Bos taurus GN=GTF2B PE=2
SV=1
Length = 316
Score = 509 bits (1312), Expect = e-144, Method: Compositional matrix adjust.
Identities = 244/305 (80%), Positives = 270/305 (88%)
Query: 5 KVCCYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPE 64
+V C HPDA L+EDYRAGD IC ECGLVVGDRVIDVGSEWRTFSN+K+ DPSRVG +
Sbjct: 12 RVTCPNHPDAILVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDSQ 71
Query: 65 NPLLNGSDLSTMIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADRINLT 124
NPLL+ DLSTMIG G G ASFD FG SKYQNRRTM+SSDRA++NA +EI +MADRINL
Sbjct: 72 NPLLSDGDLSTMIGKGTGAASFDEFGNSKYQNRRTMSSSDRAMMNAFKEITTMADRINLP 131
Query: 125 KTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEI 184
+ IVDR NNLFKQV++ K+LKGR+NDAIASACLYIACRQEGVPRTFKEICAVS+ISKKEI
Sbjct: 132 RNIVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFKEICAVSRISKKEI 191
Query: 185 GRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPI 244
GRCFKLILKALETSVDLITTGDFMSRFCSNL LP VQ AATHIARKAVELD+VPGRSPI
Sbjct: 192 GRCFKLILKALETSVDLITTGDFMSRFCSNLCLPKQVQMAATHIARKAVELDLVPGRSPI 251
Query: 245 SVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKLFPQDFVFHTPIH 304
SVA AAIYMASQAS++KR+QKEIGDIAGVA+VTIRQSY+L+YP A LFP DF F TP+
Sbjct: 252 SVAEAAIYMASQASAEKRTQKEIGDIAGVADVTIRQSYRLIYPRAPDLFPTDFKFDTPVD 311
Query: 305 ELPQL 309
+LPQL
Sbjct: 312 KLPQL 316
>sp|Q9NHP7|TF2B_DROVI Transcription initiation factor IIB OS=Drosophila virilis GN=TfIIB
PE=3 SV=1
Length = 293
Score = 493 bits (1269), Expect = e-139, Method: Compositional matrix adjust.
Identities = 240/306 (78%), Positives = 258/306 (84%), Gaps = 22/306 (7%)
Query: 4 NKVCCYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGP 63
NKVCCY HP++PLIEDYRAGD ICSECGLVVGD GGP
Sbjct: 10 NKVCCYAHPESPLIEDYRAGDMICSECGLVVGDAF----------------------GGP 47
Query: 64 ENPLLNGSDLSTMIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADRINL 123
ENPLL+G LST+IGPG G ASFD FG KY NRRTM SSDR+L++A +EI+SMADRINL
Sbjct: 48 ENPLLSGGHLSTIIGPGTGSASFDAFGAPKYPNRRTMRSSDRSLISAFKEISSMADRINL 107
Query: 124 TKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKE 183
KTIVDRAN LFKQVHDGKNLKGRSNDA ASACLYIACRQEGVPRTFKEICAVSKISKKE
Sbjct: 108 PKTIVDRANTLFKQVHDGKNLKGRSNDAKASACLYIACRQEGVPRTFKEICAVSKISKKE 167
Query: 184 IGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSP 243
IGRCFKL LKALETSVDLITT DFM RFC+NL LPNMVQ+AATHIA+KAVE+DIVPGRSP
Sbjct: 168 IGRCFKLTLKALETSVDLITTADFMCRFCANLDLPNMVQRAATHIAKKAVEMDIVPGRSP 227
Query: 244 ISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKLFPQDFVFHTPI 303
ISVAAAAIYMASQAS KRSQKEIGDIAGVA+VTIRQSYKLMYPHA+KLFP+DF F TPI
Sbjct: 228 ISVAAAAIYMASQASEHKRSQKEIGDIAGVADVTIRQSYKLMYPHAAKLFPEDFKFTTPI 287
Query: 304 HELPQL 309
+LPQ+
Sbjct: 288 DQLPQM 293
>sp|O16991|TF2B_CAEEL Transcription initiation factor IIB OS=Caenorhabditis elegans
GN=ttb-1 PE=3 SV=2
Length = 306
Score = 398 bits (1022), Expect = e-110, Method: Compositional matrix adjust.
Identities = 188/302 (62%), Positives = 245/302 (81%), Gaps = 2/302 (0%)
Query: 6 VCCYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPEN 65
V C HPD LIED+RAGD +C CGLVVGDR++DVG+EWR+FSNE+SG DPSRVG PEN
Sbjct: 5 VQCPIHPDVHLIEDHRAGDLVCPACGLVVGDRLVDVGTEWRSFSNERSGNDPSRVGAPEN 64
Query: 66 PLLNGSDLSTMIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADRINLTK 125
PLL+G DLST I G G + D ++ Q R++MN++DR + A+ I M++RI+L +
Sbjct: 65 PLLSGGDLSTTIAVGFGGSDSDN-SLANAQ-RKSMNNTDRQMTAAMSLIREMSERIHLPR 122
Query: 126 TIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIG 185
I D A+ +FK V + K L+G++N+A A+ACLYIACR++GVPRTFKEICAVS++SKKEIG
Sbjct: 123 NIQDSASRIFKDVLESKALRGKNNEAQAAACLYIACRKDGVPRTFKEICAVSRVSKKEIG 182
Query: 186 RCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPIS 245
RCFK+I+++LET+++ IT+ DFMSRFC NLSLPN +Q AAT IA+ AV++D+V GR+PIS
Sbjct: 183 RCFKIIVRSLETNLEQITSADFMSRFCGNLSLPNSIQAAATRIAKCAVDMDLVAGRTPIS 242
Query: 246 VAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKLFPQDFVFHTPIHE 305
+AAAAIYMASQAS++KRS KEIGD+AG AE+T+RQ+YKL+YP A +LFP+DF F TPI
Sbjct: 243 IAAAAIYMASQASAEKRSAKEIGDVAGAAEITVRQTYKLLYPKALELFPKDFRFVTPIDA 302
Query: 306 LP 307
LP
Sbjct: 303 LP 304
>sp|Q54FD6|TF2B_DICDI Transcription initiation factor IIB OS=Dictyostelium discoideum
GN=gtf2b PE=3 SV=1
Length = 325
Score = 311 bits (798), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 154/305 (50%), Positives = 212/305 (69%), Gaps = 9/305 (2%)
Query: 6 VCCYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSN-EKSGVDPSRVGGPE 64
VC + PD +IEDY GD IC CG+VVGDR++D SEWRTFSN E +G DP+RVGGP
Sbjct: 25 VCRIQDPD--IIEDYAKGDLICRGCGVVVGDRIVDEHSEWRTFSNSESTGADPNRVGGPI 82
Query: 65 NPLLNGSDLSTMIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADRINLT 124
NPLL S LST +G G D+ +++ QN+ + + DR LL A +EI MAD +NL
Sbjct: 83 NPLLRDSALSTTVGKGSKDSG----TLTRLQNKSALGTGDRNLLAAFKEIGRMADHMNLP 138
Query: 125 KTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEI 184
+T+ DRAN LF+ + D K+ KGRS D + +A LYIACRQE + RTFKEI A++ + KKEI
Sbjct: 139 QTVQDRANELFRFMDDKKSTKGRSVDGMVAAALYIACRQEHLSRTFKEIAALTNVPKKEI 198
Query: 185 GRCFKLILKALETSVDL--ITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRS 242
RC+K++ + + ++L I++ DF SRFCS L LPN V+K A H+++ A+++ IV G+S
Sbjct: 199 SRCYKIMKETFASVLNLQTISSEDFTSRFCSTLKLPNDVKKGAEHVSKMAMDMGIVAGKS 258
Query: 243 PISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKLFPQDFVFHTP 302
PISV AA+IYM SQ S +KR+QK+I D++GV+EVTIR +YK +Y +L P D + +
Sbjct: 259 PISVTAASIYMVSQLSPEKRTQKQIADVSGVSEVTIRNAYKDLYAKRDQLIPSDSPYFSQ 318
Query: 303 IHELP 307
+ LP
Sbjct: 319 VQYLP 323
>sp|P48512|TF2B1_ARATH Transcription initiation factor IIB-1 OS=Arabidopsis thaliana
GN=TFIIB1 PE=1 SV=1
Length = 312
Score = 272 bits (695), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 147/302 (48%), Positives = 193/302 (63%), Gaps = 12/302 (3%)
Query: 13 DAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSD 72
+ L+ D+ AGD +CSECGLV+ ID SEWRTF+NE S DP+RVGGP NPLL S
Sbjct: 12 ETELVVDHSAGDTLCSECGLVLESHSIDETSEWRTFANESSNSDPNRVGGPTNPLLADSA 71
Query: 73 LSTMIG-PGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADRINLTKTIVDRA 131
L+T+I P F + ++QNR + +SDR L+ A + I +M++R+ L TI DRA
Sbjct: 72 LTTVIAKPNGSSGDFLSSSLGRWQNRNS--NSDRGLIQAFKTIATMSERLGLVATIKDRA 129
Query: 132 NNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSK-ISKKEIGRCFKL 190
N L+K++ D K+ +GR+ DA+ +ACLYIACRQE PRT KEIC ++ +KKEIGR
Sbjct: 130 NELYKRLEDQKSSRGRNQDALYAACLYIACRQEDKPRTIKEICVIANGATKKEIGRAKDY 189
Query: 191 ILKAL----ETSVDL--ITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPI 244
I+K L SVDL I GDFM RFCSNL++ N KAA +K+ E DI RSPI
Sbjct: 190 IVKTLGLEPGQSVDLGTIHAGDFMRRFCSNLAMSNHAVKAAQEAVQKSEEFDI--RRSPI 247
Query: 245 SVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKLFPQDFVFHTPIH 304
S+AA IY+ +Q S DK++ K+I GVAE TIR SYK +YPH SK+ P + +
Sbjct: 248 SIAAVVIYIITQLSDDKKTLKDISHATGVAEGTIRNSYKDLYPHLSKIAPSWYAKEEDLK 307
Query: 305 EL 306
L
Sbjct: 308 NL 309
>sp|Q8W0W3|TF2B_ORYSJ Transcription initiation factor IIB OS=Oryza sativa subsp. japonica
GN=TFIIB PE=1 SV=1
Length = 312
Score = 270 bits (690), Expect = 9e-72, Method: Compositional matrix adjust.
Identities = 147/307 (47%), Positives = 193/307 (62%), Gaps = 14/307 (4%)
Query: 8 CYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPL 67
C +H + D+ AGD +C+ECGLV+ +D SEWRTF+NE S DP RVGGP NPL
Sbjct: 9 CKKHTEVAF--DHSAGDTVCTECGLVLEAHSVDETSEWRTFANESSDNDPVRVGGPTNPL 66
Query: 68 LNGSDLSTMIG-PGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADRINLTKT 126
L LST+I P F + ++QNR + + DR+L+ A R I +MADR+ L T
Sbjct: 67 LTDGGLSTVIAKPNGAQGEFLSSSLGRWQNRGS--NPDRSLILAFRTIANMADRLGLVAT 124
Query: 127 IVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSK-ISKKEIG 185
I DRAN ++K+V D K+++GR+ DAI +ACLYIACRQE PRT KEIC+V+ +KKEIG
Sbjct: 125 IKDRANEIYKKVEDLKSIRGRNQDAILAACLYIACRQEDRPRTVKEICSVANGATKKEIG 184
Query: 186 RCFKLILKALET------SVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVP 239
R + I+K LE + I GDF+ RFCS L + N KAA +++ ELDI
Sbjct: 185 RAKEFIVKQLEVEMGQSMEMGTIHAGDFLRRFCSTLGMNNQAVKAAQEAVQRSEELDI-- 242
Query: 240 GRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKLFPQDFVF 299
RSPIS+AAA IYM +Q S DK+ K+I GVAE TIR SYK +YP+AS+L P +
Sbjct: 243 RRSPISIAAAVIYMITQLSDDKKPLKDISLATGVAEGTIRNSYKDLYPYASRLIPNTYAK 302
Query: 300 HTPIHEL 306
+ L
Sbjct: 303 EEDLKNL 309
>sp|P48513|TF2B_SOYBN Transcription initiation factor IIB OS=Glycine max GN=TFIIB1 PE=2
SV=1
Length = 313
Score = 267 bits (682), Expect = 9e-71, Method: Compositional matrix adjust.
Identities = 145/300 (48%), Positives = 189/300 (63%), Gaps = 13/300 (4%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLST 75
++ D+ AGD +CSECGLV+ ID SEWRTF+NE DP+RVGGP NPLL LST
Sbjct: 15 VVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPNRVGGPSNPLLTDGGLST 74
Query: 76 MIGP--GRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADRINLTKTIVDRANN 133
+I G G F + ++QNR + + DRAL+ A + I +M+DR+ L TI DRAN
Sbjct: 75 VIAKPNGGGGGEFLSSSLGRWQNRGS--NPDRALIQAFKTIATMSDRLGLVATIKDRANE 132
Query: 134 LFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSK-ISKKEIGRCFKLIL 192
++K+V D K+ +GR+ DA+ +ACLYIACRQE PRT KEIC+V+ +KKEIGR + I+
Sbjct: 133 IYKRVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYIV 192
Query: 193 KAL------ETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISV 246
K L + I GDFM RFCSNL + N KAA +K+ E DI RSPIS+
Sbjct: 193 KQLGLENGNAVEMGTIHAGDFMRRFCSNLCMNNQAVKAAQEAVQKSEEFDIR--RSPISI 250
Query: 247 AAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKLFPQDFVFHTPIHEL 306
AAA IY+ +Q S DK+ K+I GVAE TIR SYK +YPH SK+ P + + L
Sbjct: 251 AAAVIYIITQLSDDKKPLKDISLATGVAEGTIRNSYKDLYPHVSKIIPNWYAKEEDLKNL 310
>sp|Q9SS44|TF2B2_ARATH Transcription initiation factor IIB-2 OS=Arabidopsis thaliana
GN=TFIIB2 PE=2 SV=1
Length = 312
Score = 260 bits (665), Expect = 7e-69, Method: Compositional matrix adjust.
Identities = 145/307 (47%), Positives = 191/307 (62%), Gaps = 14/307 (4%)
Query: 8 CYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPL 67
C H + ++ D+ AGD +CSECGLV+ ID SEWRTF+NE DP RVGGP NPL
Sbjct: 9 CKRHTE--VVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
Query: 68 LNGSDLSTMIG-PGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADRINLTKT 126
L L+T+I P F + ++QNR + + DR L+ A + I +MADR+ L T
Sbjct: 67 LADGGLTTVISKPNGSSGDFLSSSLGRWQNRGS--NPDRGLIVAFKTIATMADRLGLVAT 124
Query: 127 IVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSK-ISKKEIG 185
I DRAN ++K+V D K+ +GR+ DA+ +ACLYIACRQE PRT KEIC+V+ +KKEIG
Sbjct: 125 IKDRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIG 184
Query: 186 RCFKLILK--ALET----SVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVP 239
R + I+K LET + I GDFM RFCSNL + N KAA +K+ E DI
Sbjct: 185 RAKEYIVKQLGLETGQLVEMGTIHAGDFMRRFCSNLGMTNQTVKAAQESVQKSEEFDIR- 243
Query: 240 GRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKLFPQDFVF 299
RSPIS+AAA IY+ +Q S +K+ ++I GVAE TIR SYK +YPH SK+ P +
Sbjct: 244 -RSPISIAAAVIYIITQLSDEKKPLRDISVATGVAEGTIRNSYKDLYPHLSKIIPAWYAK 302
Query: 300 HTPIHEL 306
+ L
Sbjct: 303 EEDLKNL 309
>sp|O13749|TF2B_SCHPO Transcription initiation factor IIB OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=sua7 PE=3 SV=1
Length = 340
Score = 254 bits (648), Expect = 8e-67, Method: Compositional matrix adjust.
Identities = 141/320 (44%), Positives = 194/320 (60%), Gaps = 29/320 (9%)
Query: 1 MNINKVCCYEHPDAP-LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSN--EKSGVDP 57
+++ +C D P L+E++ +GD +C CGLV+GDR+ID SEWRTFSN E SG DP
Sbjct: 14 LSVKMICSECREDPPNLVEEFSSGDTVCGSCGLVLGDRIIDTRSEWRTFSNSDEASG-DP 72
Query: 58 SRVGGPENPLLNGSDLSTMIGPGRGDASFDGFG--MSKYQNRRTMNSSDRALLNAIREIN 115
SRVG NPLLNGS L T I +S+DG G ++K Q R ++ LL A +EI
Sbjct: 73 SRVGKVANPLLNGSQLDTTI------SSYDGAGAMLAKAQGRSVQVRGEKNLLTAYKEIG 126
Query: 116 SMADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICA 175
+M D I+L K I D A L+K+V D K LKG+S+ +I +AC+YIACRQ VPRTF EIC
Sbjct: 127 AMCDAISLPKVIADTAKQLYKRVDDHKALKGKSSQSIIAACIYIACRQGKVPRTFMEICT 186
Query: 176 VSKISKKEIGRCFKLILK------ALETSVDLI-----------TTGDFMSRFCSNLSLP 218
++ + KKEIGR +K + + AL SVD + + D M RFC+ L LP
Sbjct: 187 LTNVPKKEIGRVYKTLQRMLTEGGALHNSVDALKGHEYIQSSSTSAEDLMVRFCNRLMLP 246
Query: 219 NMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTI 278
VQ AA +AR+A + GRSPIS+AA+ IYM S ++ KEI ++ GV++ TI
Sbjct: 247 MSVQSAAAELARRAGLQGTLAGRSPISIAASGIYMISALMGYPKTPKEISEVTGVSDSTI 306
Query: 279 RQSYKLMYPHASKLFPQDFV 298
R +YKL++ +L ++
Sbjct: 307 RIAYKLLHAERKELIDPKWI 326
>sp|Q8SRP3|TF2B_ENCCU Transcription initiation factor IIB OS=Encephalitozoon cuniculi
(strain GB-M1) GN=ECU06_1100i PE=3 SV=1
Length = 312
Score = 246 bits (628), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 125/293 (42%), Positives = 186/293 (63%), Gaps = 6/293 (2%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLST 75
++EDY+ G +C CG +VG+R+ID GSEWR+F + + VDP R+G NP L L T
Sbjct: 23 IVEDYKNGYHVCGRCGCIVGNRIIDEGSEWRSFG-DSNKVDPCRIGSASNPYLESEQLDT 81
Query: 76 MIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADRINLTKTIVDRANNLF 135
MI G G + + +SK Q + +M +RAL + + I + +R NL++TI+DRA+ +F
Sbjct: 82 MISTGGG---MNSYVLSKIQMKNSMRGPERALKHGMNLITAFCERSNLSRTIIDRAHYIF 138
Query: 136 KQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGRCFKLILKAL 195
K + + K LKG++ + I +AC+YIACRQE PRTFKEI ++ + K+EIGRCFKLI L
Sbjct: 139 KNIEERKLLKGKNVEGIVAACIYIACRQEECPRTFKEISVMTAVQKREIGRCFKLISPHL 198
Query: 196 ETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMAS 255
E + +T + ++RFCS+L+L +QK AT IA+ A EL + G+SP S+AAA IYM +
Sbjct: 199 ERMATM-STENIIARFCSDLNLNIKIQKIATEIAKAAHELGCLAGKSPDSIAAAVIYMVT 257
Query: 256 QA-SSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKLFPQDFVFHTPIHELP 307
+K+ QK+I + V EVTI+ +YK + + P++ V I +LP
Sbjct: 258 NLFPEEKKIQKDIQFVTNVTEVTIKNTYKELLTFKYDIIPENMVNKESIDKLP 310
>sp|O28970|TF2B_ARCFU Transcription initiation factor IIB OS=Archaeoglobus fulgidus
(strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC
100126) GN=tfb PE=3 SV=1
Length = 326
Score = 204 bits (519), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 111/286 (38%), Positives = 164/286 (57%), Gaps = 11/286 (3%)
Query: 8 CYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPL 67
C E LI DYR G+ IC +CGLV+ D ID G EWR F +E+ SRVG P
Sbjct: 30 CPECGSPRLIRDYRRGEFICQDCGLVIEDTYIDAGPEWRAFDSEQRD-KRSRVGAPVTYT 88
Query: 68 LNGSDLSTMIGPGRGDASFDG---------FGMSKYQNR-RTMNSSDRALLNAIREINSM 117
++ LST+I D F + K+Q R R N+++R L A+ E++ M
Sbjct: 89 IHDKGLSTIIDWSNKDYYGKAISVRNRAQLFRLRKWQRRIRISNATERNLAFALSELDRM 148
Query: 118 ADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVS 177
A + L K++ + A ++++ + ++GRS + + +A LY ACRQ GVPRT EI S
Sbjct: 149 ASALGLPKSVRETAAVIYRKAVEKNLIRGRSIEGVVAAALYAACRQAGVPRTLDEIATYS 208
Query: 178 KISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDI 237
++ +KEIGR ++ I + L + + D++ RFC+ L L VQK A I +KA E ++
Sbjct: 209 RVDRKEIGRTYRFITRELGLKLMPTSPADYIPRFCAALGLSGEVQKKAIEIIKKAEEREL 268
Query: 238 VPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
GR P VAAAA+Y+AS ++R+Q+E+ ++AGV EVTIR YK
Sbjct: 269 TSGRGPTGVAAAALYVASILLGERRTQREVAEVAGVTEVTIRNRYK 314
Score = 48.9 bits (115), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 48/96 (50%), Gaps = 1/96 (1%)
Query: 208 MSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEI 267
+ R S L LP V++ A I RKAVE +++ GRS V AAA+Y A + + R+ EI
Sbjct: 145 LDRMASALGLPKSVRETAAVIYRKAVEKNLIRGRSIEGVVAAALYAACRQAGVPRTLDEI 204
Query: 268 GDIAGVAEVTIRQSYKLMYPHAS-KLFPQDFVFHTP 302
+ V I ++Y+ + KL P + P
Sbjct: 205 ATYSRVDRKEIGRTYRFITRELGLKLMPTSPADYIP 240
>sp|Q05959|TF2B_KLULA Transcription initiation factor IIB OS=Kluyveromyces lactis (strain
ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL
Y-1140 / WM37) GN=SUA7 PE=3 SV=1
Length = 357
Score = 196 bits (499), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 116/313 (37%), Positives = 178/313 (56%), Gaps = 19/313 (6%)
Query: 1 MNINKVC--CYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNE-KSGVDP 57
+NI C C +P ++E + GD +C+ CGLV+ DR++D SEWRTFSN+ ++G DP
Sbjct: 22 LNIVISCPECKVYP-PKVVERFSEGDIVCALCGLVLSDRIVDTRSEWRTFSNDDQNGDDP 80
Query: 58 SRVGGPENPLLNGSDLSTMIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSM 117
SRVG NPLL+G+ L+T IG +G + +++ Q++ ++ D L A +I M
Sbjct: 81 SRVGEASNPLLDGNHLTTRIGQAQGSDARVTRDLNRAQSKSIVDKKDNELQAAYAKITMM 140
Query: 118 ADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVS 177
D L K + D A +K + + LKG+S ++I ++ + + CR+ V R+FKEI +++
Sbjct: 141 CDAAELPKIVKDCAKEAYKLCFEERVLKGKSQESIMASVILVGCRRAEVGRSFKEILSLT 200
Query: 178 KISKKEIGRCFKLILKALETSVDL---------ITTGD-----FMSRFCSNLSLPNMVQK 223
+ KKEIG+ F +I L D ITTG F+ RFCS+L L V
Sbjct: 201 NVRKKEIGKTFTIIKNILREKNDRGFANIDTSNITTGQTSAETFIPRFCSHLGLSVQVAN 260
Query: 224 AATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
AA +IA+ + +++++ GRSPI++AAAAIYMA+ S I V E T++ YK
Sbjct: 261 AAEYIAKHSKDVNVLAGRSPITIAAAAIYMATLLFKLNISPTRISQTLQVTEGTVKGGYK 320
Query: 284 LMYPHASKLF-PQ 295
+Y H K+ PQ
Sbjct: 321 ALYEHKEKVVDPQ 333
>sp|Q2NEL6|TF2B_METST Transcription initiation factor IIB OS=Methanosphaera stadtmanae
(strain DSM 3091) GN=tfb PE=3 SV=1
Length = 311
Score = 187 bits (475), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 102/295 (34%), Positives = 169/295 (57%), Gaps = 15/295 (5%)
Query: 1 MNINKVCCYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRV 60
M + C E LI D+ G+ +C CGLV+ D ++D+G EWR F +E+ +RV
Sbjct: 8 MEKKETKCPECGSTKLINDHERGEVVCGACGLVIDDNIVDMGPEWRAFDHEQRD-KRTRV 66
Query: 61 GGPENPLLNGSDLSTMIG-----------PGRGDASFDGFGMSKYQNR-RTMNSSDRALL 108
G P ++ LSTMI P R A + + + K+Q + R +++R L
Sbjct: 67 GAPITYTIHDKGLSTMIDWRNKDIYGRDIPARNRAQW--YRLRKWQRKIRISGATERNLA 124
Query: 109 NAIREINSMADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPR 168
A+ E++ + R+ L +++ + A+ +++ + K ++GRS + + +A LY ACR+ VPR
Sbjct: 125 FALSELDRDSSRLGLPRSVRESASVVYRNAVENKLIRGRSIEGVVAASLYAACRRCKVPR 184
Query: 169 TFKEICAVSKISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHI 228
T EI VS++SKKE+GR ++ + + L + + D++ RF S L+L +VQ A I
Sbjct: 185 TLDEIADVSRVSKKEVGRTYRFLTRELHIRLPPTSPIDYVPRFASELNLSGVVQSKAIEI 244
Query: 229 ARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
+A++ + GR P VAAAA+Y+AS ++++Q+++ DIAGV EVTIR YK
Sbjct: 245 INQAMDNGLTSGRGPTGVAAAALYIASVLLGERKTQRDVADIAGVTEVTIRNRYK 299
Score = 48.1 bits (113), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 53/102 (51%), Gaps = 4/102 (3%)
Query: 208 MSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEI 267
+ R S L LP V+++A+ + R AVE ++ GRS V AA++Y A + R+ EI
Sbjct: 130 LDRDSSRLGLPRSVRESASVVYRNAVENKLIRGRSIEGVVAASLYAACRRCKVPRTLDEI 189
Query: 268 GDIAGVAEVTIRQSYKLMYPHASKLFPQDFVFHTPIHELPQL 309
D++ V++ + ++Y+ + P +PI +P+
Sbjct: 190 ADVSRVSKKEVGRTYRFLTRELHIRLPPT----SPIDYVPRF 227
Score = 36.2 bits (82), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 42/85 (49%)
Query: 117 MADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAV 176
A +NL+ + +A + Q D GR +A+A LYIA G +T +++ +
Sbjct: 227 FASELNLSGVVQSKAIEIINQAMDNGLTSGRGPTGVAAAALYIASVLLGERKTQRDVADI 286
Query: 177 SKISKKEIGRCFKLILKALETSVDL 201
+ +++ I +K + + L+ V+L
Sbjct: 287 AGVTEVTIRNRYKELTEQLDMGVNL 311
>sp|A5UKA1|TF2B_METS3 Transcription initiation factor IIB OS=Methanobrevibacter smithii
(strain PS / ATCC 35061 / DSM 861) GN=tfb PE=3 SV=1
Length = 310
Score = 187 bits (474), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 101/292 (34%), Positives = 165/292 (56%), Gaps = 15/292 (5%)
Query: 4 NKVCCYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGP 63
+ C E LI DY + +C+ CGLV+ + ++D+G EWR F +E+ +RVG P
Sbjct: 10 KQTVCPECGSTELIGDYERAEVVCAHCGLVIDENLVDMGPEWRAFDHEQRD-KRTRVGAP 68
Query: 64 ENPLLNGSDLSTMIG-----------PGRGDASFDGFGMSKYQNR-RTMNSSDRALLNAI 111
++ LSTMI P R A + + + K+Q + R +++R L A+
Sbjct: 69 ITYTIHDKGLSTMIDWRNKDIYGRDIPARNRAQW--YRLRKWQRKIRISGATERNLAFAL 126
Query: 112 REINSMADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFK 171
E++ + R+ L +++ + A+ +++ D K ++GRS + + +A LY ACR+ VPRT
Sbjct: 127 SELDRDSSRLGLPRSVREAASVVYRSAVDNKLIRGRSIEGVVAASLYAACRRCNVPRTLD 186
Query: 172 EICAVSKISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARK 231
EI VS+++KKE+GR ++ + + L + + D++ RF S L L Q A I K
Sbjct: 187 EIAEVSRVTKKEVGRTYRFLTRELNIKLPPTSPVDYVPRFASELGLSGEAQSRAIEIIEK 246
Query: 232 AVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
A+E + GR P VAAAA+Y+AS ++++Q+++ DIAGV EVTIR YK
Sbjct: 247 AMEKGLTSGRGPTGVAAAALYIASVLLGERKTQRDVADIAGVTEVTIRNRYK 298
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 53/96 (55%), Gaps = 1/96 (1%)
Query: 208 MSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEI 267
+ R S L LP V++AA+ + R AV+ ++ GRS V AA++Y A + + R+ EI
Sbjct: 129 LDRDSSRLGLPRSVREAASVVYRSAVDNKLIRGRSIEGVVAASLYAACRRCNVPRTLDEI 188
Query: 268 GDIAGVAEVTIRQSYKLMYPHAS-KLFPQDFVFHTP 302
+++ V + + ++Y+ + + KL P V + P
Sbjct: 189 AEVSRVTKKEVGRTYRFLTRELNIKLPPTSPVDYVP 224
>sp|B8GJQ9|TF2B_METPE Transcription initiation factor IIB OS=Methanosphaerula palustris
(strain ATCC BAA-1556 / DSM 19958 / E1-9c) GN=tfb PE=3
SV=1
Length = 334
Score = 186 bits (473), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 110/286 (38%), Positives = 166/286 (58%), Gaps = 11/286 (3%)
Query: 8 CYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPL 67
C E L+ DY + +C CGLV+ D ID G EWR F +++ + SRVG P
Sbjct: 38 CPECKSRQLVHDYERAELVCQNCGLVIDDDFIDRGPEWRAFDHDQR-MKRSRVGAPMTFT 96
Query: 68 LNGSDLSTMI------GPGRGDASFDG---FGMSKYQNR-RTMNSSDRALLNAIREINSM 117
++ LSTMI GR +S + + + K+Q R R N+++R L A+ E++ M
Sbjct: 97 IHDKGLSTMIDWRNRDSYGRAISSKNRAQLYRLRKWQRRIRVSNATERNLAFALSELDRM 156
Query: 118 ADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVS 177
A + L + + + A +++ D ++GRS + +A+A LY ACRQ VPRT EI VS
Sbjct: 157 ASALGLPRNVRETAAVVYRDAVDKNLIRGRSIEGVAAAALYAACRQCSVPRTLDEIAEVS 216
Query: 178 KISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDI 237
++S+KEIGR ++ I + L + + D++ RFCS L+L VQ A I R+A E ++
Sbjct: 217 RVSRKEIGRTYRFISRELGLKLLPTSPIDYVPRFCSGLTLKGEVQSRAVEILRQAAEREL 276
Query: 238 VPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
GR P VAAAAIY++S ++R+Q+E+ ++AGV EVTIR YK
Sbjct: 277 TSGRGPTGVAAAAIYISSILGGERRTQREVAEVAGVTEVTIRNRYK 322
Score = 38.5 bits (88), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 52/96 (54%), Gaps = 1/96 (1%)
Query: 208 MSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEI 267
+ R S L LP V++ A + R AV+ +++ GRS VAAAA+Y A + S R+ EI
Sbjct: 153 LDRMASALGLPRNVRETAAVVYRDAVDKNLIRGRSIEGVAAAALYAACRQCSVPRTLDEI 212
Query: 268 GDIAGVAEVTIRQSYKLMYPHAS-KLFPQDFVFHTP 302
+++ V+ I ++Y+ + KL P + + P
Sbjct: 213 AEVSRVSRKEIGRTYRFISRELGLKLLPTSPIDYVP 248
Score = 32.0 bits (71), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 19/81 (23%), Positives = 40/81 (49%)
Query: 121 INLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKIS 180
+ L + RA + +Q + + GR +A+A +YI+ G RT +E+ V+ ++
Sbjct: 254 LTLKGEVQSRAVEILRQAAERELTSGRGPTGVAAAAIYISSILGGERRTQREVAEVAGVT 313
Query: 181 KKEIGRCFKLILKALETSVDL 201
+ I +K + + L+ + L
Sbjct: 314 EVTIRNRYKELAEKLDIEIIL 334
>sp|P29055|TF2B_YEAST Transcription initiation factor IIB OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=SUA7 PE=1 SV=1
Length = 345
Score = 186 bits (472), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 111/311 (35%), Positives = 170/311 (54%), Gaps = 17/311 (5%)
Query: 1 MNINKVC--CYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNE-KSGVDP 57
+NI C C +P ++E + GD +C+ CGLV+ D+++D SEWRTFSN+ +G DP
Sbjct: 18 LNIVLTCPECKVYP-PKIVERFSEGDVVCALCGLVLSDKLVDTRSEWRTFSNDDHNGDDP 76
Query: 58 SRVGGPENPLLNGSDLSTMIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSM 117
SRVG NPLL+G++LST IG G ++K Q + M+ D + A +I +
Sbjct: 77 SRVGEASNPLLDGNNLSTRIGKGETTDMRFTKELNKAQGKNVMDKKDNEVQAAFAKITML 136
Query: 118 ADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVS 177
D L K + D A +K HD K LKG+S ++I +A + I CR+ V RTFKEI ++
Sbjct: 137 CDAAELPKIVKDCAKEAYKLCHDEKTLKGKSMESIMAASILIGCRRAEVARTFKEIQSLI 196
Query: 178 KISKKEIGRCFKL---ILKA------LETSVDLITTGD---FMSRFCSNLSLPNMVQKAA 225
+ KE G+ + IL+ L+ D ++ ++ RFCS+L LP V +A
Sbjct: 197 HVKTKEFGKTLNIMKNILRGKSEDGFLKIDTDNMSGAQNLTYIPRFCSHLGLPMQVTTSA 256
Query: 226 THIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLM 285
+ A+K E+ + G+SPI++A +IY+ + ++G V E TI+ YK++
Sbjct: 257 EYTAKKCKEIKEIAGKSPITIAVVSIYLNILLFQIPITAAKVGQTLQVTEGTIKSGYKIL 316
Query: 286 YPHASKLF-PQ 295
Y H KL PQ
Sbjct: 317 YEHRDKLVDPQ 327
>sp|A7IAR4|TF2B_METB6 Transcription initiation factor IIB OS=Methanoregula boonei (strain
6A8) GN=tfb PE=3 SV=1
Length = 334
Score = 186 bits (471), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 111/292 (38%), Positives = 168/292 (57%), Gaps = 11/292 (3%)
Query: 2 NINKVCCYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVG 61
N + C E L+ DY + +C CGLV+ D ID G EWR F +++ + SRVG
Sbjct: 32 NHTETVCPECGGRQLVHDYERAELVCQSCGLVIDDDFIDRGPEWRAFDHDQR-MKRSRVG 90
Query: 62 GPENPLLNGSDLSTMI------GPGRGDASFDG---FGMSKYQNR-RTMNSSDRALLNAI 111
P ++ LSTMI GR +S + + + K+Q R R N+++R L A+
Sbjct: 91 APMTFTIHDKGLSTMIDWRNRDSYGRAISSKNRAQLYRLRKWQRRIRVSNATERNLAFAL 150
Query: 112 REINSMADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFK 171
E++ MA + L + + + A +++ D ++GRS + +A+A LY ACRQ VPRT
Sbjct: 151 SELDRMASALGLPRNVRETAAVVYRDAVDKNLIRGRSIEGVAAAALYAACRQCSVPRTLD 210
Query: 172 EICAVSKISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARK 231
EI VS++S+KEIGR ++ I + L + + D++ RFCS L+L VQ A I R+
Sbjct: 211 EIAEVSRVSRKEIGRTYRFISRELGLKLLPTSPIDYVPRFCSGLTLKGEVQSRAVEILRQ 270
Query: 232 AVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
A E ++ GR P VAAAAIY++S ++R+Q+E+ ++AGV EVTIR YK
Sbjct: 271 AGERELTSGRGPTGVAAAAIYISSILGGERRTQREVAEVAGVTEVTIRNRYK 322
Score = 38.5 bits (88), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 52/96 (54%), Gaps = 1/96 (1%)
Query: 208 MSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEI 267
+ R S L LP V++ A + R AV+ +++ GRS VAAAA+Y A + S R+ EI
Sbjct: 153 LDRMASALGLPRNVRETAAVVYRDAVDKNLIRGRSIEGVAAAALYAACRQCSVPRTLDEI 212
Query: 268 GDIAGVAEVTIRQSYKLMYPHAS-KLFPQDFVFHTP 302
+++ V+ I ++Y+ + KL P + + P
Sbjct: 213 AEVSRVSRKEIGRTYRFISRELGLKLLPTSPIDYVP 248
Score = 32.0 bits (71), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 19/81 (23%), Positives = 40/81 (49%)
Query: 121 INLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKIS 180
+ L + RA + +Q + + GR +A+A +YI+ G RT +E+ V+ ++
Sbjct: 254 LTLKGEVQSRAVEILRQAGERELTSGRGPTGVAAAAIYISSILGGERRTQREVAEVAGVT 313
Query: 181 KKEIGRCFKLILKALETSVDL 201
+ I +K + + L+ + L
Sbjct: 314 EVTIRNRYKELAEKLDIEIIL 334
>sp|A3CSQ6|TF2B_METMJ Transcription initiation factor IIB OS=Methanoculleus marisnigri
(strain ATCC 35101 / DSM 1498 / JR1) GN=tfb PE=3 SV=1
Length = 337
Score = 183 bits (464), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 109/286 (38%), Positives = 166/286 (58%), Gaps = 11/286 (3%)
Query: 8 CYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPL 67
C E L+ DY + +C CGLV+ + ID G EWR F +++ + SRVG P
Sbjct: 41 CPECGSRQLVHDYERAELVCQNCGLVLDEEFIDRGPEWRAFDHDQR-MKRSRVGAPMTFT 99
Query: 68 LNGSDLSTMI------GPGRGDASFDG---FGMSKYQNR-RTMNSSDRALLNAIREINSM 117
++ LSTMI GR +S + + + K+Q R R N+++R L A+ E++ M
Sbjct: 100 IHDKGLSTMIDWRNRDSYGRAISSKNRAQLYRLRKWQRRIRVSNATERNLAFALSELDRM 159
Query: 118 ADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVS 177
A + L + + + A +++ D ++GRS + +A+A LY ACRQ VPRT EI VS
Sbjct: 160 ASALGLPRNVRETAAVVYRDAVDKNLIRGRSIEGVAAAALYAACRQCSVPRTLDEIAEVS 219
Query: 178 KISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDI 237
++S+KEIGR ++ I + L + + D++ RFCS L+L VQ A I R+A E ++
Sbjct: 220 RVSRKEIGRTYRFISRELGLKLLPTSPIDYVPRFCSGLNLKGEVQSRAVEILRQAGEREL 279
Query: 238 VPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
GR P VAAAAIY++S ++R+Q+E+ ++AGV EVTIR YK
Sbjct: 280 TSGRGPTGVAAAAIYISSILGGERRTQREVAEVAGVTEVTIRNRYK 325
Score = 38.5 bits (88), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 52/96 (54%), Gaps = 1/96 (1%)
Query: 208 MSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEI 267
+ R S L LP V++ A + R AV+ +++ GRS VAAAA+Y A + S R+ EI
Sbjct: 156 LDRMASALGLPRNVRETAAVVYRDAVDKNLIRGRSIEGVAAAALYAACRQCSVPRTLDEI 215
Query: 268 GDIAGVAEVTIRQSYKLMYPHAS-KLFPQDFVFHTP 302
+++ V+ I ++Y+ + KL P + + P
Sbjct: 216 AEVSRVSRKEIGRTYRFISRELGLKLLPTSPIDYVP 251
Score = 34.3 bits (77), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 41/81 (50%)
Query: 121 INLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKIS 180
+NL + RA + +Q + + GR +A+A +YI+ G RT +E+ V+ ++
Sbjct: 257 LNLKGEVQSRAVEILRQAGERELTSGRGPTGVAAAAIYISSILGGERRTQREVAEVAGVT 316
Query: 181 KKEIGRCFKLILKALETSVDL 201
+ I +K + + L+ + L
Sbjct: 317 EVTIRNRYKELAEKLDIEIIL 337
>sp|P58111|TF2B1_SULSO Transcription initiation factor IIB 1 OS=Sulfolobus solfataricus
(strain ATCC 35092 / DSM 1617 / JCM 11322 / P2) GN=tfbA
PE=3 SV=1
Length = 309
Score = 182 bits (463), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 105/290 (36%), Positives = 162/290 (55%), Gaps = 11/290 (3%)
Query: 4 NKVCCYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGP 63
NK P +I D G+ ICSE G V+ D++ID G EWR F+ E+ SRVGGP
Sbjct: 8 NKSVSTPCPPDKIIFDAERGEYICSETGEVLEDKIIDQGPEWRAFTPEEKE-KRSRVGGP 66
Query: 64 ENPLLNGSDLSTMIGPGRGDA---------SFDGFGMSKYQNR-RTMNSSDRALLNAIRE 113
N ++ LST+I DA + K+Q R R +S DR L A+ E
Sbjct: 67 LNNTIHDRGLSTLIDWKDKDAMGRTLDPKRRLEALRWRKWQIRARIQSSIDRNLAQAMNE 126
Query: 114 INSMADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEI 173
+ + + +NL K++ D A ++++ + ++GRS +++ +A +Y ACR+ + RT EI
Sbjct: 127 LERIGNLLNLPKSVKDEAALIYRKAVEKGLVRGRSIESVVAAAIYAACRRMKLARTLDEI 186
Query: 174 CAVSKISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAV 233
+K ++KE+ RC++L+L+ L+ SV + D+++R + L L V K A I KA
Sbjct: 187 AQYTKANRKEVARCYRLLLRELDVSVPVSDPKDYVTRIANLLGLSGAVMKTAAEIIDKAK 246
Query: 234 ELDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
+ G+ P +AAAAIY+AS ++R+QKEI +AGV EVT+R YK
Sbjct: 247 GSGLTAGKDPAGLAAAAIYIASLLHDERRTQKEIAQVAGVTEVTVRNRYK 296
Score = 45.4 bits (106), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 54/106 (50%), Gaps = 3/106 (2%)
Query: 183 EIGRCFKLILKA-LETSVD--LITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVP 239
E R K ++A +++S+D L + + R + L+LP V+ A I RKAVE +V
Sbjct: 99 EALRWRKWQIRARIQSSIDRNLAQAMNELERIGNLLNLPKSVKDEAALIYRKAVEKGLVR 158
Query: 240 GRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLM 285
GRS SV AAAIY A + R+ EI + + Y+L+
Sbjct: 159 GRSIESVVAAAIYAACRRMKLARTLDEIAQYTKANRKEVARCYRLL 204
>sp|P50387|TF2B_SULSH Transcription initiation factor IIB OS=Sulfolobus shibatae GN=tfb
PE=3 SV=1
Length = 309
Score = 182 bits (462), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 105/290 (36%), Positives = 162/290 (55%), Gaps = 11/290 (3%)
Query: 4 NKVCCYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGP 63
NK P +I D G+ ICSE G V+ D++ID G EWR F+ E+ SRVGGP
Sbjct: 8 NKSVSTPCPPDKIIFDAERGEYICSETGEVLEDKIIDQGPEWRAFTPEEKE-KRSRVGGP 66
Query: 64 ENPLLNGSDLSTMIGPGRGDA---------SFDGFGMSKYQNR-RTMNSSDRALLNAIRE 113
N ++ LST+I DA + K+Q R R +S DR L A+ E
Sbjct: 67 LNNTIHDRGLSTLIDWKDKDAMGRTLDPKRRLEALRWRKWQIRARIQSSIDRNLAQAMNE 126
Query: 114 INSMADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEI 173
+ + + +NL K++ D A ++++ + ++GRS +++ +A +Y ACR+ + RT EI
Sbjct: 127 LERIGNLLNLPKSVKDEAALIYRKAVEKGLVRGRSIESVVAAAIYAACRRMKLARTLDEI 186
Query: 174 CAVSKISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAV 233
+K ++KE+ RC++L+L+ L+ SV + D+++R + L L V K A I KA
Sbjct: 187 AQYTKANRKEVARCYRLLLRELDVSVPVSDPKDYVTRIANLLGLSGRVMKTAAEIIDKAK 246
Query: 234 ELDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
+ G+ P +AAAAIY+AS ++R+QKEI +AGV EVT+R YK
Sbjct: 247 GSGLTAGKDPAGLAAAAIYIASLLHDERRTQKEIAQVAGVTEVTVRNRYK 296
Score = 45.4 bits (106), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 54/106 (50%), Gaps = 3/106 (2%)
Query: 183 EIGRCFKLILKA-LETSVD--LITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVP 239
E R K ++A +++S+D L + + R + L+LP V+ A I RKAVE +V
Sbjct: 99 EALRWRKWQIRARIQSSIDRNLAQAMNELERIGNLLNLPKSVKDEAALIYRKAVEKGLVR 158
Query: 240 GRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLM 285
GRS SV AAAIY A + R+ EI + + Y+L+
Sbjct: 159 GRSIESVVAAAIYAACRRMKLARTLDEIAQYTKANRKEVARCYRLL 204
>sp|O26971|TF2B_METTH Transcription initiation factor IIB OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=tfb PE=3 SV=1
Length = 310
Score = 179 bits (455), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 96/277 (34%), Positives = 160/277 (57%), Gaps = 15/277 (5%)
Query: 19 DYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLSTMIG 78
DY + +C +CGLV+ D ++D+G EWR F +E+ +RVG P ++ LSTMI
Sbjct: 25 DYERAEIVCGKCGLVIDDNLVDMGPEWRAFDHEQRD-KRTRVGAPITYTIHDKGLSTMID 83
Query: 79 -----------PGRGDASFDGFGMSKYQNR-RTMNSSDRALLNAIREINSMADRINLTKT 126
P R A + + + K+Q + R +++R L A+ E++ + R+ L ++
Sbjct: 84 WRNKDIYGRDIPARNRAQW--YRLRKWQRKIRISGATERNLAFALSELDRDSSRLGLPRS 141
Query: 127 IVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGR 186
+ + A+ ++++ + K ++GRS + + +A LY ACR+ VPRT EI VS++SKKE+GR
Sbjct: 142 VREAASMVYRRAVENKLIRGRSIEGVVAASLYAACRKCNVPRTLDEIAEVSRVSKKEVGR 201
Query: 187 CFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISV 246
++ + + L + + D++ RF S L L VQ A I A+E + GR P V
Sbjct: 202 TYRFLTRELNIKLPPTSPVDYVPRFASELGLSGEVQSKAIEIIEMAMENGLTSGRGPTGV 261
Query: 247 AAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
AAAA+Y+AS + ++Q+++ ++AGV EVTIR YK
Sbjct: 262 AAAALYIASVLLGEHKTQRDVAEVAGVTEVTIRNRYK 298
Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 55/96 (57%), Gaps = 1/96 (1%)
Query: 208 MSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEI 267
+ R S L LP V++AA+ + R+AVE ++ GRS V AA++Y A + + R+ EI
Sbjct: 129 LDRDSSRLGLPRSVREAASMVYRRAVENKLIRGRSIEGVVAASLYAACRKCNVPRTLDEI 188
Query: 268 GDIAGVAEVTIRQSYKLMYPHAS-KLFPQDFVFHTP 302
+++ V++ + ++Y+ + + KL P V + P
Sbjct: 189 AEVSRVSKKEVGRTYRFLTRELNIKLPPTSPVDYVP 224
>sp|Q9HJM7|TF2B1_THEAC Transcription initiation factor IIB 1 OS=Thermoplasma acidophilum
(strain ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 /
AMRC-C165) GN=tfbA PE=3 SV=1
Length = 312
Score = 178 bits (452), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 99/288 (34%), Positives = 158/288 (54%), Gaps = 15/288 (5%)
Query: 8 CYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPL 67
C E LI DY G+ +C ECG V+ D ID G EWR F +E++ +R G P
Sbjct: 16 CPECGSTNLIRDYEHGELVCGECGAVIEDAYIDQGPEWRAFDSEQNE-SRARAGSPMTYT 74
Query: 68 LNGSDLSTMIG-----------PGRGDASFDGFGMSKYQNR-RTMNSSDRALLNAIREIN 115
++ LST I P R A + + K+Q R + N+++R L A++E+
Sbjct: 75 IHDKGLSTDISWKNKDSYGRSIPTRNRAQL--YRLRKWQKRIKVSNAAERNLSQALQELE 132
Query: 116 SMADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICA 175
MA +++ + + A ++++ ++GRS + + + LY ACR VPRT EI +
Sbjct: 133 RMASNLSIPDDVKETAAVIYRKAVKQNMIRGRSIEGVVAGALYAACRITNVPRTLGEIAS 192
Query: 176 VSKISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVEL 235
V+++ KKEIGR ++++ + L+ ++ D++SRFCS L L + A I R A
Sbjct: 193 VTRVKKKEIGRTYRIMSRYLKLNIMPSKAEDYISRFCSKLKLSMDTRNKALEILRSAENA 252
Query: 236 DIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
+ G+ P VAAAAIY+AS + ++R+Q+ + ++AGV EVTIR YK
Sbjct: 253 GLTSGKGPTGVAAAAIYIASLMTGERRTQRAVAEVAGVTEVTIRNRYK 300
Score = 52.4 bits (124), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 48/78 (61%)
Query: 208 MSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEI 267
+ R SNLS+P+ V++ A I RKAV+ +++ GRS V A A+Y A + ++ R+ EI
Sbjct: 131 LERMASNLSIPDDVKETAAVIYRKAVKQNMIRGRSIEGVVAGALYAACRITNVPRTLGEI 190
Query: 268 GDIAGVAEVTIRQSYKLM 285
+ V + I ++Y++M
Sbjct: 191 ASVTRVKKKEIGRTYRIM 208
>sp|Q979Q3|TF2B1_THEVO Transcription initiation factor IIB 1 OS=Thermoplasma volcanium
(strain ATCC 51530 / DSM 4299 / JCM 9571 / NBRC 15438 /
GSS1) GN=tfbA PE=3 SV=1
Length = 312
Score = 177 bits (450), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 99/288 (34%), Positives = 159/288 (55%), Gaps = 15/288 (5%)
Query: 8 CYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPL 67
C E LI DY G+ +C ECG V+ D ID G EWR F +E++ +R G P
Sbjct: 16 CPECGSTNLIRDYEHGELVCGECGAVIEDSYIDQGPEWRAFDSEQNE-SRARAGSPMTFT 74
Query: 68 LNGSDLSTMIG-----------PGRGDASFDGFGMSKYQNR-RTMNSSDRALLNAIREIN 115
++ LST I P R A + + K+Q R + N+++R L A++E+
Sbjct: 75 IHDKGLSTDISWKNKDSYGRSIPTRNRAQL--YRLRKWQKRIKVSNAAERNLSQALQELE 132
Query: 116 SMADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICA 175
MA +++ + + A ++++ ++GRS + + + LY ACR VPRT EI +
Sbjct: 133 RMAFNLSIPNDVRETAAVIYRKAVKQNMIRGRSIEGVVAGALYAACRITNVPRTLGEIAS 192
Query: 176 VSKISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVEL 235
V+++ KKEIGR ++++ + L+ ++ D++SRFCS L L + A I R A +
Sbjct: 193 VTRVKKKEIGRTYRIMSRYLKLNIMPSKAEDYISRFCSKLKLSMDTRNKALEILRDAENV 252
Query: 236 DIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
+ G+ P VAAAAIY+AS + ++R+Q+ + ++AGV EVTIR YK
Sbjct: 253 GLTSGKGPTGVAAAAIYIASLITGERRTQRAVAEVAGVTEVTIRNRYK 300
Score = 52.0 bits (123), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 47/78 (60%)
Query: 208 MSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEI 267
+ R NLS+PN V++ A I RKAV+ +++ GRS V A A+Y A + ++ R+ EI
Sbjct: 131 LERMAFNLSIPNDVRETAAVIYRKAVKQNMIRGRSIEGVVAGALYAACRITNVPRTLGEI 190
Query: 268 GDIAGVAEVTIRQSYKLM 285
+ V + I ++Y++M
Sbjct: 191 ASVTRVKKKEIGRTYRIM 208
>sp|P61999|TF2B_PYRWO Transcription initiation factor IIB OS=Pyrococcus woesei GN=tfb
PE=1 SV=1
Length = 300
Score = 175 bits (443), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 99/291 (34%), Positives = 166/291 (57%), Gaps = 12/291 (4%)
Query: 1 MNINKVC--CYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPS 58
MN KVC C A LI D G+ +C++CG V+ + +ID+G EWR F + S
Sbjct: 1 MNKQKVCPAC---ESAELIYDPERGEIVCAKCGYVIEENIIDMGPEWRAFDASQRE-RRS 56
Query: 59 RVGGPENPLLNGSDLSTMIGPGR---GDASFDGFGMSKYQNR-RTMNSSDRALLNAIREI 114
R G PE+ LL+ LST IG R G + + K+Q+R R ++++R L A+ E+
Sbjct: 57 RTGAPESILLHDKGLSTEIGIDRSLSGLMREKMYRLRKWQSRLRVSDAAERNLAFALSEL 116
Query: 115 NSMADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEIC 174
+ + ++ L + + + A L+++ ++GRS +++ +AC+Y ACR VPRT EI
Sbjct: 117 DRITAQLKLPRHVEEEAARLYREAVRKGLIRGRSIESVMAACVYAACRLLKVPRTLDEIA 176
Query: 175 AVSKISKKEIGRCFKLILKALETSVD--LITTGDFMSRFCSNLSLPNMVQKAATHIARKA 232
++++ KKEIGR ++ I + L + + D++++F L L V++ A I +A
Sbjct: 177 DIARVDKKEIGRSYRFIARNLNLTPKKLFVKPTDYVNKFADELGLSEKVRRRAIEILDEA 236
Query: 233 VELDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
+ + G+SP + AAA+Y+AS +KR+Q+E+ ++A V EVT+R YK
Sbjct: 237 YKRGLTSGKSPAGLVAAALYIASLLEGEKRTQREVAEVARVTEVTVRNRYK 287
Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 52/97 (53%), Gaps = 6/97 (6%)
Query: 208 MSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEI 267
+ R + L LP V++ A + R+AV ++ GRS SV AA +Y A + R+ EI
Sbjct: 116 LDRITAQLKLPRHVEEEAARLYREAVRKGLIRGRSIESVMAACVYAACRLLKVPRTLDEI 175
Query: 268 GDIAGVAEVTIRQSYKLMYPHAS----KLF--PQDFV 298
DIA V + I +SY+ + + + KLF P D+V
Sbjct: 176 ADIARVDKKEIGRSYRFIARNLNLTPKKLFVKPTDYV 212
Score = 42.4 bits (98), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 46/86 (53%)
Query: 114 INSMADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEI 173
+N AD + L++ + RA + + + G+S + +A LYIA EG RT +E+
Sbjct: 212 VNKFADELGLSEKVRRRAIEILDEAYKRGLTSGKSPAGLVAAALYIASLLEGEKRTQREV 271
Query: 174 CAVSKISKKEIGRCFKLILKALETSV 199
V+++++ + +K +++ L+ V
Sbjct: 272 AEVARVTEVTVRNRYKELVEKLKIKV 297
>sp|P61998|TF2B_PYRFU Transcription initiation factor IIB OS=Pyrococcus furiosus (strain
ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) GN=tfb PE=1 SV=1
Length = 300
Score = 175 bits (443), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 99/291 (34%), Positives = 166/291 (57%), Gaps = 12/291 (4%)
Query: 1 MNINKVC--CYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPS 58
MN KVC C A LI D G+ +C++CG V+ + +ID+G EWR F + S
Sbjct: 1 MNKQKVCPAC---ESAELIYDPERGEIVCAKCGYVIEENIIDMGPEWRAFDASQRE-RRS 56
Query: 59 RVGGPENPLLNGSDLSTMIGPGR---GDASFDGFGMSKYQNR-RTMNSSDRALLNAIREI 114
R G PE+ LL+ LST IG R G + + K+Q+R R ++++R L A+ E+
Sbjct: 57 RTGAPESILLHDKGLSTEIGIDRSLSGLMREKMYRLRKWQSRLRVSDAAERNLAFALSEL 116
Query: 115 NSMADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEIC 174
+ + ++ L + + + A L+++ ++GRS +++ +AC+Y ACR VPRT EI
Sbjct: 117 DRITAQLKLPRHVEEEAARLYREAVRKGLIRGRSIESVMAACVYAACRLLKVPRTLDEIA 176
Query: 175 AVSKISKKEIGRCFKLILKALETSVD--LITTGDFMSRFCSNLSLPNMVQKAATHIARKA 232
++++ KKEIGR ++ I + L + + D++++F L L V++ A I +A
Sbjct: 177 DIARVDKKEIGRSYRFIARNLNLTPKKLFVKPTDYVNKFADELGLSEKVRRRAIEILDEA 236
Query: 233 VELDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
+ + G+SP + AAA+Y+AS +KR+Q+E+ ++A V EVT+R YK
Sbjct: 237 YKRGLTSGKSPAGLVAAALYIASLLEGEKRTQREVAEVARVTEVTVRNRYK 287
Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 52/97 (53%), Gaps = 6/97 (6%)
Query: 208 MSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEI 267
+ R + L LP V++ A + R+AV ++ GRS SV AA +Y A + R+ EI
Sbjct: 116 LDRITAQLKLPRHVEEEAARLYREAVRKGLIRGRSIESVMAACVYAACRLLKVPRTLDEI 175
Query: 268 GDIAGVAEVTIRQSYKLMYPHAS----KLF--PQDFV 298
DIA V + I +SY+ + + + KLF P D+V
Sbjct: 176 ADIARVDKKEIGRSYRFIARNLNLTPKKLFVKPTDYV 212
Score = 42.4 bits (98), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 46/86 (53%)
Query: 114 INSMADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEI 173
+N AD + L++ + RA + + + G+S + +A LYIA EG RT +E+
Sbjct: 212 VNKFADELGLSEKVRRRAIEILDEAYKRGLTSGKSPAGLVAAALYIASLLEGEKRTQREV 271
Query: 174 CAVSKISKKEIGRCFKLILKALETSV 199
V+++++ + +K +++ L+ V
Sbjct: 272 AEVARVTEVTVRNRYKELVEKLKIKV 297
>sp|A9A8Q0|TF2B_METM6 Transcription initiation factor IIB OS=Methanococcus maripaludis
(strain C6 / ATCC BAA-1332) GN=tfb PE=3 SV=1
Length = 339
Score = 174 bits (442), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 106/283 (37%), Positives = 161/283 (56%), Gaps = 11/283 (3%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLST 75
+I+DY + +C CG V+ + DVG EWR F +E+ V SRVG P ++ LST
Sbjct: 51 IIKDYERAEIVCEMCGCVLQQNLFDVGPEWRAFDHEQR-VKRSRVGAPMTYTIHDKGLST 109
Query: 76 MIGPGRGDA-----SFDG----FGMSKYQNR-RTMNSSDRALLNAIREINSMADRINLTK 125
+I D+ S D + + K+Q R R ++S+R L A+ E++ +A ++ L +
Sbjct: 110 VIDWRNKDSYGKDISADKRAQLYRLRKWQRRIRVSDASERNLAFALSELDRIASKLGLPR 169
Query: 126 TIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIG 185
+ + A L++ + ++GRS + +A+A LY ACR+ VPRT EI VS++ +KEIG
Sbjct: 170 NVRENAAVLYRGAVEKGLIRGRSIEGVAAAALYAACRRCKVPRTLDEIAEVSRVDRKEIG 229
Query: 186 RCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPIS 245
R ++ I + L + D++ RF S L LP V+ A I +KA E + GR P
Sbjct: 230 RTYRFISRELNIRLAPTNPVDYVPRFASELKLPGEVESKAISILQKAGEKGLTSGRGPTG 289
Query: 246 VAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPH 288
VAAAAIY+AS +R+Q+E+ D+AGV EVTIR YK + H
Sbjct: 290 VAAAAIYIASVLQGTRRTQREVADVAGVTEVTIRNRYKELTEH 332
Score = 33.5 bits (75), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/93 (22%), Positives = 45/93 (48%)
Query: 109 NAIREINSMADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPR 168
N + + A + L + +A ++ ++ + GR +A+A +YIA +G R
Sbjct: 247 NPVDYVPRFASELKLPGEVESKAISILQKAGEKGLTSGRGPTGVAAAAIYIASVLQGTRR 306
Query: 169 TFKEICAVSKISKKEIGRCFKLILKALETSVDL 201
T +E+ V+ +++ I +K + + L+ V L
Sbjct: 307 TQREVADVAGVTEVTIRNRYKELTEHLDIDVTL 339
>sp|A6UW60|TF2B_META3 Transcription initiation factor IIB OS=Methanococcus aeolicus
(strain Nankai-3 / ATCC BAA-1280) GN=tfb PE=3 SV=1
Length = 334
Score = 174 bits (442), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 104/283 (36%), Positives = 165/283 (58%), Gaps = 11/283 (3%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLST 75
+I+DY + +C +CG V+ D + DVG EWR F +E+ V SRVG P ++ LST
Sbjct: 46 IIKDYEKAEIVCEDCGCVLQDNLFDVGPEWRAFDHEQR-VKRSRVGAPMTYTIHDKGLST 104
Query: 76 MIGPGRGDA-----SFDG----FGMSKYQNR-RTMNSSDRALLNAIREINSMADRINLTK 125
+I D+ S D + + K+Q R R ++S+R L A+ E++ +A ++ L +
Sbjct: 105 VIDWRNKDSYGKDISADKRAQLYRLRKWQRRIRVSDASERNLAFALSELDRIASKLGLPR 164
Query: 126 TIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIG 185
+ + A L++ + ++GRS + +A+A LY ACR+ VPRT EI +S++ +KEIG
Sbjct: 165 NVRENAAVLYRGAVEKGLIRGRSIEGVAAAALYAACRRCKVPRTLDEIAEMSRVDRKEIG 224
Query: 186 RCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPIS 245
R ++ I + L+ + + D++ RF S L LP V+ A I +KA + + GR P
Sbjct: 225 RTYRFISRELKIRLAPTSPIDYVPRFASELKLPGEVESKAISILQKAGDKGLTSGRGPTG 284
Query: 246 VAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPH 288
VAAAAIY+AS +++Q+E+ D+AGV EVTIR YK + H
Sbjct: 285 VAAAAIYIASVLHGTRKTQREVADVAGVTEVTIRNRYKELTEH 327
Score = 32.0 bits (71), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 20/85 (23%), Positives = 41/85 (48%)
Query: 117 MADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAV 176
A + L + +A ++ ++ D GR +A+A +YIA G +T +E+ V
Sbjct: 250 FASELKLPGEVESKAISILQKAGDKGLTSGRGPTGVAAAAIYIASVLHGTRKTQREVADV 309
Query: 177 SKISKKEIGRCFKLILKALETSVDL 201
+ +++ I +K + + L+ V L
Sbjct: 310 AGVTEVTIRNRYKELTEHLDIDVTL 334
>sp|A6VI28|TF2B_METM7 Transcription initiation factor IIB OS=Methanococcus maripaludis
(strain C7 / ATCC BAA-1331) GN=tfb PE=3 SV=1
Length = 339
Score = 174 bits (442), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 106/283 (37%), Positives = 161/283 (56%), Gaps = 11/283 (3%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLST 75
+I+DY + +C CG V+ + DVG EWR F +E+ V SRVG P ++ LST
Sbjct: 51 IIKDYERAEIVCEMCGCVLQQNLFDVGPEWRAFDHEQR-VKRSRVGAPMTYTIHDKGLST 109
Query: 76 MIGPGRGDA-----SFDG----FGMSKYQNR-RTMNSSDRALLNAIREINSMADRINLTK 125
+I D+ S D + + K+Q R R ++S+R L A+ E++ +A ++ L +
Sbjct: 110 VIDWRNKDSYGKDISADKRAQLYRLRKWQRRIRVSDASERNLAFALSELDRIASKLGLPR 169
Query: 126 TIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIG 185
+ + A L++ + ++GRS + +A+A LY ACR+ VPRT EI VS++ +KEIG
Sbjct: 170 NVRENAAVLYRGAVEKGLIRGRSIEGVAAAALYAACRRCKVPRTLDEIAEVSRVDRKEIG 229
Query: 186 RCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPIS 245
R ++ I + L + D++ RF S L LP V+ A I +KA E + GR P
Sbjct: 230 RTYRFISRELNIRLAPTNPVDYVPRFASELKLPGEVESKAISILQKAGEKGLTSGRGPTG 289
Query: 246 VAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPH 288
VAAAAIY+AS +R+Q+E+ D+AGV EVTIR YK + H
Sbjct: 290 VAAAAIYIASVLQGTRRTQREVADVAGVTEVTIRNRYKELTEH 332
Score = 33.5 bits (75), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/93 (22%), Positives = 45/93 (48%)
Query: 109 NAIREINSMADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPR 168
N + + A + L + +A ++ ++ + GR +A+A +YIA +G R
Sbjct: 247 NPVDYVPRFASELKLPGEVESKAISILQKAGEKGLTSGRGPTGVAAAAIYIASVLQGTRR 306
Query: 169 TFKEICAVSKISKKEIGRCFKLILKALETSVDL 201
T +E+ V+ +++ I +K + + L+ V L
Sbjct: 307 TQREVADVAGVTEVTIRNRYKELTEHLDIDVTL 339
>sp|Q6M176|TF2B_METMP Transcription initiation factor IIB OS=Methanococcus maripaludis
(strain S2 / LL) GN=tfb PE=3 SV=1
Length = 339
Score = 174 bits (442), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 106/283 (37%), Positives = 161/283 (56%), Gaps = 11/283 (3%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLST 75
+I+DY + +C CG V+ + DVG EWR F +E+ V SRVG P ++ LST
Sbjct: 51 IIKDYERAEIVCEMCGCVLQQNLFDVGPEWRAFDHEQR-VKRSRVGAPMTYTIHDKGLST 109
Query: 76 MIGPGRGDA-----SFDG----FGMSKYQNR-RTMNSSDRALLNAIREINSMADRINLTK 125
+I D+ S D + + K+Q R R ++S+R L A+ E++ +A ++ L +
Sbjct: 110 VIDWRNKDSYGKDISADKRAQLYRLRKWQRRIRVSDASERNLAFALSELDRIASKLGLPR 169
Query: 126 TIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIG 185
+ + A L++ + ++GRS + +A+A LY ACR+ VPRT EI VS++ +KEIG
Sbjct: 170 NVRENAAVLYRGAVEKGLIRGRSIEGVAAAALYAACRRCKVPRTLDEIAEVSRVDRKEIG 229
Query: 186 RCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPIS 245
R ++ I + L + D++ RF S L LP V+ A I +KA E + GR P
Sbjct: 230 RTYRFISRELNIRLAPTNPVDYVPRFASELKLPGEVESKAISILQKAGERGLTSGRGPTG 289
Query: 246 VAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPH 288
VAAAAIY+AS +R+Q+E+ D+AGV EVTIR YK + H
Sbjct: 290 VAAAAIYIASVLQGTRRTQREVADVAGVTEVTIRNRYKELTEH 332
Score = 33.1 bits (74), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 21/93 (22%), Positives = 45/93 (48%)
Query: 109 NAIREINSMADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPR 168
N + + A + L + +A ++ ++ + GR +A+A +YIA +G R
Sbjct: 247 NPVDYVPRFASELKLPGEVESKAISILQKAGERGLTSGRGPTGVAAAAIYIASVLQGTRR 306
Query: 169 TFKEICAVSKISKKEIGRCFKLILKALETSVDL 201
T +E+ V+ +++ I +K + + L+ V L
Sbjct: 307 TQREVADVAGVTEVTIRNRYKELTEHLDIDVTL 339
>sp|A8MCX6|TF2B_CALMQ Transcription initiation factor IIB OS=Caldivirga maquilingensis
(strain ATCC 700844 / DSMZ 13496 / JCM 10307 / IC-167)
GN=tfb PE=3 SV=1
Length = 336
Score = 174 bits (440), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 93/272 (34%), Positives = 149/272 (54%), Gaps = 5/272 (1%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNG---SD 72
IED G +C+ CG V+ + ++D G EWR F+ E+ D +R GGP + + +
Sbjct: 53 FIEDAERGQIVCASCGYVLMEHILDTGPEWRAFTPEEKE-DRARTGGPLERVTSEELVTR 111
Query: 73 LSTMIGPGRGDASFDGFGMSKYQNR-RTMNSSDRALLNAIREINSMADRINLTKTIVDRA 131
+ T + + K+Q R R S +R L+ A E+N +A ++ + K+ +D A
Sbjct: 112 IETTLKSPDLKKKLEILKYKKWQQRIRVQTSYERNLVQATHELNRIAHQLGVPKSCMDEA 171
Query: 132 NNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGRCFKLI 191
++KQV +KGRS +AI +ACL++ACR +G+PR+ EI ++ +KEI RCF+LI
Sbjct: 172 LAVYKQVLKSGLVKGRSVEAIIAACLHMACRMQGMPRSLDEISQYTRAPRKEIARCFRLI 231
Query: 192 LKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAI 251
+ L + L ++ + L LP + K A + +A + + G+ P +AAAA+
Sbjct: 232 ARELRIRLPLSDPRQYVPKIVEQLKLPGDIAKEAIRVLEEAKDKGLTAGKDPAGLAAAAV 291
Query: 252 YMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
Y+AS + R+QKEI A V EVT+R YK
Sbjct: 292 YIASLLKGEVRTQKEIAQAAQVTEVTVRNRYK 323
Score = 31.6 bits (70), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 19/88 (21%), Positives = 42/88 (47%)
Query: 114 INSMADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEI 173
+ + +++ L I A + ++ D G+ +A+A +YIA +G RT KEI
Sbjct: 248 VPKIVEQLKLPGDIAKEAIRVLEEAKDKGLTAGKDPAGLAAAAVYIASLLKGEVRTQKEI 307
Query: 174 CAVSKISKKEIGRCFKLILKALETSVDL 201
+++++ + +K + K L + +
Sbjct: 308 AQAAQVTEVTVRNRYKELAKELNIKIPI 335
Score = 31.2 bits (69), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 19/86 (22%), Positives = 39/86 (45%)
Query: 200 DLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASS 259
+L+ ++R L +P A + ++ ++ +V GRS ++ AA ++MA +
Sbjct: 146 NLVQATHELNRIAHQLGVPKSCMDEALAVYKQVLKSGLVKGRSVEAIIAACLHMACRMQG 205
Query: 260 DKRSQKEIGDIAGVAEVTIRQSYKLM 285
RS EI I + ++L+
Sbjct: 206 MPRSLDEISQYTRAPRKEIARCFRLI 231
>sp|A0B5T8|TF2B_METTP Transcription initiation factor IIB OS=Methanosaeta thermophila
(strain DSM 6194 / PT) GN=tfb PE=3 SV=1
Length = 337
Score = 174 bits (440), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 113/290 (38%), Positives = 171/290 (58%), Gaps = 15/290 (5%)
Query: 6 VCCYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPEN 65
V C E L+ DY + +CSECGLV+ + ID G EWR F +++ + SRVG P
Sbjct: 39 VECPECGSRALVRDYERAELVCSECGLVIDENFIDQGPEWRAFDHDQR-MKRSRVGAPMT 97
Query: 66 PLLNGSDLSTMIGPGRGDA---------SFDGFGMSKYQNR-RTMNSSDRALLNAIREIN 115
++ LSTMI D+ + + K+Q R R N+++R L A+ E++
Sbjct: 98 YTIHDKGLSTMIDWRNRDSYGKTISSKNRAQLYRLRKWQRRIRVSNATERNLAFALSELD 157
Query: 116 SMADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICA 175
MA + L++ + + A ++++ + ++GRS + +A+A LY ACRQ VPRT EI
Sbjct: 158 RMASALGLSRNVRETAAVIYRRAVEKNLIRGRSIEGVAAAALYAACRQCNVPRTLDEIAE 217
Query: 176 VSKISKKEIGRCFKLILKALETSVDLITTG--DFMSRFCSNLSLPNMVQKAATHIARKAV 233
VS++S+KEIGR ++ + + L S+ L+ T D++ RFCS L+L VQ I R+A
Sbjct: 218 VSRVSRKEIGRTYRFVSREL--SLKLMPTSPIDYIPRFCSGLNLKGDVQAKGIEILRQAA 275
Query: 234 ELDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
E ++ GR P VAAAAIY+AS +D+R+Q+E+ D+AGV EVTIR YK
Sbjct: 276 EKELTSGRGPTGVAAAAIYIASILCNDRRTQREVADVAGVTEVTIRNRYK 325
Score = 38.9 bits (89), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 56/103 (54%), Gaps = 6/103 (5%)
Query: 208 MSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEI 267
+ R S L L V++ A I R+AVE +++ GRS VAAAA+Y A + + R+ EI
Sbjct: 156 LDRMASALGLSRNVRETAAVIYRRAVEKNLIRGRSIEGVAAAALYAACRQCNVPRTLDEI 215
Query: 268 GDIAGVAEVTIRQSYKLMYPHAS-KLFPQDFVFHTPIHELPQL 309
+++ V+ I ++Y+ + S KL P +PI +P+
Sbjct: 216 AEVSRVSRKEIGRTYRFVSRELSLKLMPT-----SPIDYIPRF 253
>sp|Q5JGN1|TF2B1_PYRKO Transcription initiation factor IIB 1 OS=Pyrococcus kodakaraensis
(strain ATCC BAA-918 / JCM 12380 / KOD1) GN=tfb1 PE=3
SV=1
Length = 300
Score = 173 bits (438), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 99/277 (35%), Positives = 158/277 (57%), Gaps = 13/277 (4%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTF---SNEKSGVDPSRVGGPENPLLNGSD 72
I D G+ +C CG V+ + V+D G EWR F EK +RVG PE+ LL+
Sbjct: 15 FIYDPSRGEIVCKVCGYVIEENVVDEGPEWRAFDPGQREKR----ARVGAPESILLHDKG 70
Query: 73 LSTMIGPGR---GDASFDGFGMSKYQNR-RTMNSSDRALLNAIREINSMADRINLTKTIV 128
LST IG R G + + K+Q+R R ++++R L A+ E++ +A ++L K +
Sbjct: 71 LSTDIGIDRSLTGLMREKMYRLRKWQSRLRVSDAAERNLAFALSELDRLASNLSLPKHVE 130
Query: 129 DRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGRCF 188
+ A L+++ ++GRS +A+ +AC+Y ACR VPRT EI VS++ KKEIGR F
Sbjct: 131 EEAARLYREAVRKGLIRGRSIEAVIAACVYAACRLLKVPRTLDEIADVSRVDKKEIGRSF 190
Query: 189 KLILKALETSVD--LITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISV 246
+ I + L + + D++++F L L V++ A I +A + + G+SP +
Sbjct: 191 RFIARHLNLTPKKLFVKPTDYVNKFADELGLSEKVRRRAIEILEEAYQRGLTSGKSPAGL 250
Query: 247 AAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
AAA+Y+AS +KR+Q+E+ ++A V EVT+R YK
Sbjct: 251 VAAALYIASLMEGEKRTQREVAEVARVTEVTVRNRYK 287
Score = 54.7 bits (130), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 54/97 (55%), Gaps = 6/97 (6%)
Query: 208 MSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEI 267
+ R SNLSLP V++ A + R+AV ++ GRS +V AA +Y A + R+ EI
Sbjct: 116 LDRLASNLSLPKHVEEEAARLYREAVRKGLIRGRSIEAVIAACVYAACRLLKVPRTLDEI 175
Query: 268 GDIAGVAEVTIRQSYKLMYPHAS----KLF--PQDFV 298
D++ V + I +S++ + H + KLF P D+V
Sbjct: 176 ADVSRVDKKEIGRSFRFIARHLNLTPKKLFVKPTDYV 212
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 46/86 (53%)
Query: 114 INSMADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEI 173
+N AD + L++ + RA + ++ + G+S + +A LYIA EG RT +E+
Sbjct: 212 VNKFADELGLSEKVRRRAIEILEEAYQRGLTSGKSPAGLVAAALYIASLMEGEKRTQREV 271
Query: 174 CAVSKISKKEIGRCFKLILKALETSV 199
V+++++ + +K +++ L V
Sbjct: 272 AEVARVTEVTVRNRYKELVEKLNLKV 297
>sp|A4G0F2|TF2B_METM5 Transcription initiation factor IIB OS=Methanococcus maripaludis
(strain C5 / ATCC BAA-1333) GN=tfb PE=3 SV=1
Length = 339
Score = 172 bits (435), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 105/283 (37%), Positives = 160/283 (56%), Gaps = 11/283 (3%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLST 75
+I+DY + +C CG V+ + DVG EWR F +E+ V SRVG P ++ LST
Sbjct: 51 IIKDYERAEIVCEMCGCVLQQNLFDVGPEWRAFDHEQR-VKRSRVGAPMTYTIHDKGLST 109
Query: 76 MIGPGRGDA-----SFDG----FGMSKYQNR-RTMNSSDRALLNAIREINSMADRINLTK 125
+I D+ S D + + K+Q R R ++S+R L A+ E++ +A ++ L +
Sbjct: 110 VIDWRNKDSYGKDISADKRAQLYRLRKWQRRIRVSDASERNLAFALSELDRIASKLGLPR 169
Query: 126 TIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIG 185
+ + A L++ + ++GRS + +A+A LY ACR+ VPRT EI VS++ +KEIG
Sbjct: 170 NVRENAAVLYRGAVEKGLIRGRSIEGVAAAALYAACRRCKVPRTLDEIAEVSRVDRKEIG 229
Query: 186 RCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPIS 245
R ++ I + L + D++ RF S L LP V+ A I +KA E + R P
Sbjct: 230 RTYRFISRELNIRLAPTNPVDYVPRFASELKLPGEVESKAISILQKAGEKGLTSSRGPTG 289
Query: 246 VAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPH 288
VAAAAIY+AS +R+Q+E+ D+AGV EVTIR YK + H
Sbjct: 290 VAAAAIYIASVLQGTRRTQREVADVAGVTEVTIRNRYKELTEH 332
>sp|Q9P9I7|TF2B_METTL Transcription initiation factor IIB OS=Methanococcus
thermolithotrophicus GN=tfb PE=3 SV=1
Length = 339
Score = 171 bits (432), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 105/283 (37%), Positives = 160/283 (56%), Gaps = 11/283 (3%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLST 75
+I+DY + +C CG V+ + DVG EWR F +E+ V SRVG P ++ LST
Sbjct: 51 IIKDYERAEIVCETCGCVLQQNLFDVGPEWRAFDHEQR-VKRSRVGPPMTYTIHDKGLST 109
Query: 76 MIGPGRGDA-----SFDG----FGMSKYQNR-RTMNSSDRALLNAIREINSMADRINLTK 125
+I D+ S D + + K+Q R R ++S+R L A+ E++ +A ++ L +
Sbjct: 110 VIDWRNKDSYGKDISADKRAQLYRLRKWQRRIRVSDASERNLAFALSELDRIASKLGLPR 169
Query: 126 TIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIG 185
+ + A L++ + ++GRS + +A+A LY ACR+ VPRT EI S++ +KEIG
Sbjct: 170 NVRENAAVLYRGAVEKGLIRGRSIEGVAAAALYAACRRCKVPRTLDEIAEGSRVDRKEIG 229
Query: 186 RCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPIS 245
R ++ I + L + D++ RF S L LP V+ A I +KA E + GR P
Sbjct: 230 RTYRFISRELNIRLTPTNPIDYVPRFASELKLPGEVESKAISILQKANEKGLTSGRGPTG 289
Query: 246 VAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPH 288
VAAAAIY+AS +R+Q+E+ D+AGV EVTIR YK + H
Sbjct: 290 VAAAAIYIASVLHGTRRTQREVADVAGVTEVTIRNRYKELTEH 332
Score = 34.7 bits (78), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 45/93 (48%)
Query: 109 NAIREINSMADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPR 168
N I + A + L + +A ++ ++ ++ GR +A+A +YIA G R
Sbjct: 247 NPIDYVPRFASELKLPGEVESKAISILQKANEKGLTSGRGPTGVAAAAIYIASVLHGTRR 306
Query: 169 TFKEICAVSKISKKEIGRCFKLILKALETSVDL 201
T +E+ V+ +++ I +K + + L+ V L
Sbjct: 307 TQREVADVAGVTEVTIRNRYKELTEHLDIDVTL 339
>sp|O59151|TF2B_PYRHO Transcription initiation factor IIB OS=Pyrococcus horikoshii
(strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139
/ OT-3) GN=tfb PE=3 SV=1
Length = 300
Score = 169 bits (429), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 97/291 (33%), Positives = 161/291 (55%), Gaps = 12/291 (4%)
Query: 1 MNINKVC--CYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPS 58
M KVC C I D G+ +C+ CG V+ + +ID+G EWR F + S
Sbjct: 1 MTKQKVCPVC---GSTEFIYDPERGEIVCARCGYVIEENIIDMGPEWRAFDASQRE-KRS 56
Query: 59 RVGGPENPLLNGSDLSTMIGPGR---GDASFDGFGMSKYQNR-RTMNSSDRALLNAIREI 114
R G PE+ LL+ LST IG R G + + K+Q+R R ++++R L A+ E+
Sbjct: 57 RTGAPESILLHDKGLSTDIGIDRSLTGLMREKMYRLRKWQSRLRVSDAAERNLAFALSEL 116
Query: 115 NSMADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEIC 174
+ + ++ L K + + A L+++ ++GRS +++ +AC+Y ACR VPRT EI
Sbjct: 117 DRITAQLKLPKHVEEEAARLYREAVRKGLIRGRSIESVIAACVYAACRLLKVPRTLDEIS 176
Query: 175 AVSKISKKEIGRCFKLILKALETSVD--LITTGDFMSRFCSNLSLPNMVQKAATHIARKA 232
++++ KKEIGR ++ I + L + + D++++F L L V++ A I +A
Sbjct: 177 DIARVEKKEIGRSYRFIARNLNLTPKKLFVKPTDYVNKFADELGLSEKVRRRAIEILEEA 236
Query: 233 VELDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
+ G+SP + AAA+Y+AS +KR+Q+E+ ++A V EVT+R YK
Sbjct: 237 YRRGLTSGKSPAGLVAAALYIASLLEGEKRTQREVAEVARVTEVTVRNRYK 287
Score = 51.2 bits (121), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 52/97 (53%), Gaps = 6/97 (6%)
Query: 208 MSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEI 267
+ R + L LP V++ A + R+AV ++ GRS SV AA +Y A + R+ EI
Sbjct: 116 LDRITAQLKLPKHVEEEAARLYREAVRKGLIRGRSIESVIAACVYAACRLLKVPRTLDEI 175
Query: 268 GDIAGVAEVTIRQSYKLMYPHAS----KLF--PQDFV 298
DIA V + I +SY+ + + + KLF P D+V
Sbjct: 176 SDIARVEKKEIGRSYRFIARNLNLTPKKLFVKPTDYV 212
Score = 42.0 bits (97), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 46/86 (53%)
Query: 114 INSMADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEI 173
+N AD + L++ + RA + ++ + G+S + +A LYIA EG RT +E+
Sbjct: 212 VNKFADELGLSEKVRRRAIEILEEAYRRGLTSGKSPAGLVAAALYIASLLEGEKRTQREV 271
Query: 174 CAVSKISKKEIGRCFKLILKALETSV 199
V+++++ + +K +++ L V
Sbjct: 272 AEVARVTEVTVRNRYKELVEKLGIKV 297
>sp|Q9V0V5|TF2B_PYRAB Transcription initiation factor IIB OS=Pyrococcus abyssi (strain
GE5 / Orsay) GN=tfb PE=3 SV=1
Length = 300
Score = 169 bits (427), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 91/274 (33%), Positives = 157/274 (57%), Gaps = 7/274 (2%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLST 75
I D G+ +C+ CG V+ + ++D+G EWR F + SR G PE+ LL+ LST
Sbjct: 15 FIYDPERGEIVCARCGYVIEENIVDMGPEWRAFDASQRE-KRSRTGAPESILLHDKGLST 73
Query: 76 MIGPGR---GDASFDGFGMSKYQNR-RTMNSSDRALLNAIREINSMADRINLTKTIVDRA 131
IG R G + + K+Q+R R ++++R L A+ E++ + ++ L K + + A
Sbjct: 74 DIGIDRSLTGLMREKMYRLRKWQSRLRVSDAAERNLAFALSELDRITAQLKLPKHVEEEA 133
Query: 132 NNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGRCFKLI 191
L+++ ++GRS +++ +AC+Y ACR VPRT EI ++++ KKEIGR ++ I
Sbjct: 134 ARLYREAVRKGLIRGRSIESVIAACVYAACRLLKVPRTLDEISDIARVEKKEIGRSYRFI 193
Query: 192 LKALETSVD--LITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAA 249
+ L + + D++++F L L V++ A I +A + + G+SP + AA
Sbjct: 194 ARNLNLTPKKLFVKPTDYVNKFADELGLSEKVRRRAIEILEEAYKRGLTSGKSPAGLVAA 253
Query: 250 AIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
A+Y+AS +KR+Q+E+ ++A V EVT+R YK
Sbjct: 254 ALYIASLLEGEKRTQREVAEVARVTEVTVRNRYK 287
Score = 51.6 bits (122), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 52/97 (53%), Gaps = 6/97 (6%)
Query: 208 MSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEI 267
+ R + L LP V++ A + R+AV ++ GRS SV AA +Y A + R+ EI
Sbjct: 116 LDRITAQLKLPKHVEEEAARLYREAVRKGLIRGRSIESVIAACVYAACRLLKVPRTLDEI 175
Query: 268 GDIAGVAEVTIRQSYKLMYPHAS----KLF--PQDFV 298
DIA V + I +SY+ + + + KLF P D+V
Sbjct: 176 SDIARVEKKEIGRSYRFIARNLNLTPKKLFVKPTDYV 212
Score = 42.4 bits (98), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 46/86 (53%)
Query: 114 INSMADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEI 173
+N AD + L++ + RA + ++ + G+S + +A LYIA EG RT +E+
Sbjct: 212 VNKFADELGLSEKVRRRAIEILEEAYKRGLTSGKSPAGLVAAALYIASLLEGEKRTQREV 271
Query: 174 CAVSKISKKEIGRCFKLILKALETSV 199
V+++++ + +K +++ L V
Sbjct: 272 AEVARVTEVTVRNRYKELVEKLGIKV 297
>sp|P0CW14|TF2B_METMZ Transcription initiation factor IIB OS=Methanosarcina mazei GN=tfb
PE=3 SV=1
Length = 337
Score = 169 bits (427), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 109/290 (37%), Positives = 166/290 (57%), Gaps = 11/290 (3%)
Query: 4 NKVCCYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGP 63
K C E L+ DY + +C +CGLV+ +D G EWR F +++ + SRVG P
Sbjct: 37 EKAVCPECGSRNLVHDYERAELVCGDCGLVIDADFVDEGPEWRAFDHDQR-MKRSRVGAP 95
Query: 64 ENPLLNGSDLSTMIGPGRGDASFDG---------FGMSKYQNR-RTMNSSDRALLNAIRE 113
++ LSTMI D+ + + K+Q R R N+++R L A+ E
Sbjct: 96 MTYTIHDKGLSTMIDWRNRDSYGKSISSKNRAQLYRLRKWQRRIRVSNATERNLAFALSE 155
Query: 114 INSMADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEI 173
++ MA + L +T+ + A ++++ D ++GRS + +A+A LY ACRQ VPRT EI
Sbjct: 156 LDRMASALGLPRTVRETAAVVYRKAVDKNLIRGRSIEGVAAAALYAACRQCSVPRTLDEI 215
Query: 174 CAVSKISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAV 233
VS++S+KEIGR ++ I + L + + D++ RFCS L+L VQ + I R+A
Sbjct: 216 EEVSRVSRKEIGRTYRFISRELALKLMPTSPIDYVPRFCSGLNLKGEVQSKSVEILRQAS 275
Query: 234 ELDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
E ++ GR P VAAAAIY+AS ++R+Q+E+ D+AGV EVTIR YK
Sbjct: 276 EKELTSGRGPTGVAAAAIYIASILCGERRTQREVADVAGVTEVTIRNRYK 325
Score = 42.0 bits (97), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 54/96 (56%), Gaps = 1/96 (1%)
Query: 208 MSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEI 267
+ R S L LP V++ A + RKAV+ +++ GRS VAAAA+Y A + S R+ EI
Sbjct: 156 LDRMASALGLPRTVRETAAVVYRKAVDKNLIRGRSIEGVAAAALYAACRQCSVPRTLDEI 215
Query: 268 GDIAGVAEVTIRQSYKLMYPH-ASKLFPQDFVFHTP 302
+++ V+ I ++Y+ + A KL P + + P
Sbjct: 216 EEVSRVSRKEIGRTYRFISRELALKLMPTSPIDYVP 251
>sp|P0CW15|TF2B_METMA Transcription initiation factor IIB OS=Methanosarcina mazei (strain
ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM
88) GN=tfb PE=3 SV=1
Length = 337
Score = 169 bits (427), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 109/290 (37%), Positives = 166/290 (57%), Gaps = 11/290 (3%)
Query: 4 NKVCCYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGP 63
K C E L+ DY + +C +CGLV+ +D G EWR F +++ + SRVG P
Sbjct: 37 EKAVCPECGSRNLVHDYERAELVCGDCGLVIDADFVDEGPEWRAFDHDQR-MKRSRVGAP 95
Query: 64 ENPLLNGSDLSTMIGPGRGDASFDG---------FGMSKYQNR-RTMNSSDRALLNAIRE 113
++ LSTMI D+ + + K+Q R R N+++R L A+ E
Sbjct: 96 MTYTIHDKGLSTMIDWRNRDSYGKSISSKNRAQLYRLRKWQRRIRVSNATERNLAFALSE 155
Query: 114 INSMADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEI 173
++ MA + L +T+ + A ++++ D ++GRS + +A+A LY ACRQ VPRT EI
Sbjct: 156 LDRMASALGLPRTVRETAAVVYRKAVDKNLIRGRSIEGVAAAALYAACRQCSVPRTLDEI 215
Query: 174 CAVSKISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAV 233
VS++S+KEIGR ++ I + L + + D++ RFCS L+L VQ + I R+A
Sbjct: 216 EEVSRVSRKEIGRTYRFISRELALKLMPTSPIDYVPRFCSGLNLKGEVQSKSVEILRQAS 275
Query: 234 ELDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
E ++ GR P VAAAAIY+AS ++R+Q+E+ D+AGV EVTIR YK
Sbjct: 276 EKELTSGRGPTGVAAAAIYIASILCGERRTQREVADVAGVTEVTIRNRYK 325
Score = 42.0 bits (97), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 54/96 (56%), Gaps = 1/96 (1%)
Query: 208 MSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEI 267
+ R S L LP V++ A + RKAV+ +++ GRS VAAAA+Y A + S R+ EI
Sbjct: 156 LDRMASALGLPRTVRETAAVVYRKAVDKNLIRGRSIEGVAAAALYAACRQCSVPRTLDEI 215
Query: 268 GDIAGVAEVTIRQSYKLMYPH-ASKLFPQDFVFHTP 302
+++ V+ I ++Y+ + A KL P + + P
Sbjct: 216 EEVSRVSRKEIGRTYRFISRELALKLMPTSPIDYVP 251
>sp|Q8TT29|TF2B_METAC Transcription initiation factor IIB OS=Methanosarcina acetivorans
(strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) GN=tfb
PE=3 SV=1
Length = 337
Score = 169 bits (427), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 109/290 (37%), Positives = 166/290 (57%), Gaps = 11/290 (3%)
Query: 4 NKVCCYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGP 63
K C E L+ DY + +C +CGLV+ +D G EWR F +++ + SRVG P
Sbjct: 37 EKAVCPECGSRNLVHDYERAELVCGDCGLVIDADFVDEGPEWRAFDHDQR-MKRSRVGAP 95
Query: 64 ENPLLNGSDLSTMIGPGRGDASFDG---------FGMSKYQNR-RTMNSSDRALLNAIRE 113
++ LSTMI D+ + + K+Q R R N+++R L A+ E
Sbjct: 96 MTYTIHDKGLSTMIDWRNRDSYGKSISSKNRAQLYRLRKWQRRIRVSNATERNLAFALSE 155
Query: 114 INSMADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEI 173
++ MA + L +T+ + A ++++ D ++GRS + +A+A LY ACRQ VPRT EI
Sbjct: 156 LDRMASALGLPRTVRETAAVVYRKAVDKNLIRGRSIEGVAAAALYAACRQCSVPRTLDEI 215
Query: 174 CAVSKISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAV 233
VS++S+KEIGR ++ I + L + + D++ RFCS L+L VQ + I R+A
Sbjct: 216 EEVSRVSRKEIGRTYRFISRELALKLMPTSPIDYVPRFCSGLNLKGEVQSKSVEILRQAS 275
Query: 234 ELDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
E ++ GR P VAAAAIY+AS ++R+Q+E+ D+AGV EVTIR YK
Sbjct: 276 EKELTSGRGPTGVAAAAIYIASILCGERRTQREVADVAGVTEVTIRNRYK 325
Score = 42.0 bits (97), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 54/96 (56%), Gaps = 1/96 (1%)
Query: 208 MSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEI 267
+ R S L LP V++ A + RKAV+ +++ GRS VAAAA+Y A + S R+ EI
Sbjct: 156 LDRMASALGLPRTVRETAAVVYRKAVDKNLIRGRSIEGVAAAALYAACRQCSVPRTLDEI 215
Query: 268 GDIAGVAEVTIRQSYKLMYPH-ASKLFPQDFVFHTP 302
+++ V+ I ++Y+ + A KL P + + P
Sbjct: 216 EEVSRVSRKEIGRTYRFISRELALKLMPTSPIDYVP 251
>sp|Q9HRE6|TF2B2_HALSA Transcription initiation factor IIB 2 OS=Halobacterium salinarum
(strain ATCC 700922 / JCM 11081 / NRC-1) GN=tfbB PE=3
SV=1
Length = 325
Score = 162 bits (411), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 96/281 (34%), Positives = 153/281 (54%), Gaps = 13/281 (4%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTF-SNEKSGVDPSRVGGPENPLLNGSDLS 74
+I+D G+ +C +CGLVV + ID G EWR F S EK + SRVG P +++ LS
Sbjct: 39 VIDDEEHGESVCVDCGLVVEENGIDRGPEWRAFNSTEKD--EKSRVGAPTTNMMHDKGLS 96
Query: 75 TMIGPGRGDASFDGFG---------MSKYQNR-RTMNSSDRALLNAIREINSMADRINLT 124
T IG DA + + K+ R RT NS +R L A+ EI MA + L
Sbjct: 97 TNIGWQDKDAYGNSLSSNQRQKMQRLRKWNERFRTRNSKERNLKQALGEIERMASALGLP 156
Query: 125 KTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEI 184
K + + A+ ++++ L GRS + +A+A LY + RQ PR+ E+ VS+I + E
Sbjct: 157 KEVRETASVIYRRALSEDLLPGRSIEGVATAALYASARQLSTPRSIDEVANVSRIDEMEF 216
Query: 185 GRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPI 244
R ++ I++ L V ++ RF S+L LP+ V++ + + A + G+SP+
Sbjct: 217 KRTYRYIVRELSLEVAPADPAQYVPRFASDLDLPDEVERRSRELISNAQADGVTSGKSPV 276
Query: 245 SVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLM 285
+AAAAIY +S ++ K +Q E+ ++ V+EVTIR Y+ +
Sbjct: 277 GLAAAAIYASSLLTNHKVTQSEVSEVTDVSEVTIRNRYQEL 317
>sp|Q9UWN6|TF2B_SULAC Transcription initiation factor IIB OS=Sulfolobus acidocaldarius
(strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 /
NCIMB 11770) GN=tfb PE=3 SV=2
Length = 307
Score = 162 bits (409), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 100/282 (35%), Positives = 160/282 (56%), Gaps = 11/282 (3%)
Query: 12 PDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGS 71
P +I D G+ IC+E G V+ +R+ID G EWR F+ E+ SRVGGP N ++
Sbjct: 14 PPDKIIFDEERGEYICTETGEVIEERIIDQGPEWRAFTPEEKE-KRSRVGGPLNQTIHDM 72
Query: 72 DLSTMIGPGRGDA---------SFDGFGMSKYQNRRTMNSS-DRALLNAIREINSMADRI 121
+ST+I DA + K+Q R + SS DR L A+ E+ + + +
Sbjct: 73 GISTVIDWKDKDAMGRSLDPKRRLEVLRWRKWQIRTRIQSSIDRNLAQAMNELERIGNLL 132
Query: 122 NLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISK 181
NL K + D A ++++ + ++GRS +++ +A +Y ACR+ + RT EI +K ++
Sbjct: 133 NLPKAVKDEAALIYRKAVEKGLVRGRSIESVVAASIYAACRRMKMARTLDEIAQFTKANR 192
Query: 182 KEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGR 241
KE+ RC++LIL+ L+ V + D+++R + LSL + K A I KA + G+
Sbjct: 193 KEVARCYRLILRELDIEVPVSDPKDYVTRIGTLLSLSGITMKHAAEIIEKAKNSGLTAGK 252
Query: 242 SPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
P +AAAAIY+A+ + ++R+QKEI +AGV EVT+R YK
Sbjct: 253 DPAGLAAAAIYIAALLNDERRTQKEIAQVAGVTEVTVRNRYK 294
Score = 44.7 bits (104), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 54/106 (50%), Gaps = 3/106 (2%)
Query: 183 EIGRCFKLILKA-LETSVD--LITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVP 239
E+ R K ++ +++S+D L + + R + L+LP V+ A I RKAVE +V
Sbjct: 97 EVLRWRKWQIRTRIQSSIDRNLAQAMNELERIGNLLNLPKAVKDEAALIYRKAVEKGLVR 156
Query: 240 GRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLM 285
GRS SV AA+IY A + R+ EI + + Y+L+
Sbjct: 157 GRSIESVVAASIYAACRRMKMARTLDEIAQFTKANRKEVARCYRLI 202
>sp|Q9HSF7|TF2B7_HALSA Transcription initiation factor IIB 7 OS=Halobacterium salinarum
(strain ATCC 700922 / JCM 11081 / NRC-1) GN=tfbG PE=3
SV=1
Length = 323
Score = 162 bits (409), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 96/278 (34%), Positives = 157/278 (56%), Gaps = 11/278 (3%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLST 75
L++ + +C++CGLVV + ID G EWR F N + + SRVG P ++ L+T
Sbjct: 37 LVKSSDRAELVCNDCGLVVEEEQIDPGPEWRAF-NHQERQEKSRVGAPTTQTMHDKGLTT 95
Query: 76 MIGPGRGDASFDGFG---------MSKYQNR-RTMNSSDRALLNAIREINSMADRINLTK 125
I DA + K+Q R RT ++ +R L A+ EI+ MA + + +
Sbjct: 96 TIDWKDKDAYGRSISSKKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDRMASALGVPR 155
Query: 126 TIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIG 185
++ + A+ ++++ ++GRS + +A++ LY ACR+EG+PR+ +EI VS++ +KEIG
Sbjct: 156 SVREVASVIYRRALKEDLIRGRSIEGVATSALYAACRKEGIPRSLEEISEVSRVERKEIG 215
Query: 186 RCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPIS 245
R ++ I + L + + ++ RFCS L L VQ A I E ++ G+SP
Sbjct: 216 RTYRYISQELGLEMKPVDPKKYVPRFCSELELTEEVQSKANEIIETTAEEGLLSGKSPTG 275
Query: 246 VAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
AAAAIY AS ++K++Q+E+ D+A V EVTIR Y+
Sbjct: 276 YAAAAIYAASLLCNEKKTQREVADVAQVTEVTIRNRYQ 313
>sp|Q9HHK5|TF2B3_HALSA Transcription initiation factor IIB 3 OS=Halobacterium salinarum
(strain ATCC 700922 / JCM 11081 / NRC-1) GN=tfbC PE=3
SV=1
Length = 317
Score = 160 bits (406), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 101/286 (35%), Positives = 161/286 (56%), Gaps = 13/286 (4%)
Query: 8 CYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPL 67
C E A +I D +++C +CGLV+ D ID G EWR F N SRVG P
Sbjct: 25 CPECNSANVITD--QSERVCEDCGLVLEDDQIDHGPEWRAF-NSSERDQKSRVGAPTTKT 81
Query: 68 LNGSDLSTMIGPGRGDA---SFDGFG------MSKYQNR-RTMNSSDRALLNAIREINSM 117
++ L+T I DA S D + K+Q R RT ++ +R L A+ EI+ M
Sbjct: 82 MHDKGLTTQIDWKDKDAYGRSLDAKKRNQMNRLRKWQERIRTKDAGERNLQFALSEIDRM 141
Query: 118 ADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVS 177
A + + +++ + A+ ++++ ++GRS + +A+ACLY ACRQEG+PRT +E+ V+
Sbjct: 142 ASALGVPRSVREVASVIYRRALKEDLIRGRSIEGVATACLYAACRQEGIPRTLEEVTEVA 201
Query: 178 KISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDI 237
+I +KEIGR ++ + + L + +++ RF S+L L V A I + E +
Sbjct: 202 RIDQKEIGRTYRYVAQELSLEIQPTDPKEYLPRFASDLELSEEVIAKAREIIDTSAEQGL 261
Query: 238 VPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283
+ G+SP AAAAIY AS ++K++Q+E+ ++A V EVTIR Y+
Sbjct: 262 LSGKSPSGFAAAAIYAASLLCNEKKTQREVANVANVTEVTIRNRYQ 307
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.134 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 112,262,206
Number of Sequences: 539616
Number of extensions: 4503370
Number of successful extensions: 11587
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 11230
Number of HSP's gapped (non-prelim): 192
length of query: 309
length of database: 191,569,459
effective HSP length: 117
effective length of query: 192
effective length of database: 128,434,387
effective search space: 24659402304
effective search space used: 24659402304
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)