Query psy6534
Match_columns 309
No_of_seqs 174 out of 1290
Neff 8.6
Searched_HMMs 29240
Date Fri Aug 16 20:31:33 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6534.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6534hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4bbr_M Transcription initiatio 100.0 4.1E-76 1.4E-80 540.9 8.1 304 5-308 21-341 (345)
2 3k7a_M Transcription initiatio 100.0 2.9E-71 1E-75 510.4 7.6 303 5-308 21-341 (345)
3 1c9b_A General transcription f 100.0 2E-43 6.9E-48 303.5 25.3 206 104-309 2-207 (207)
4 1ais_B TFB TFIIB, protein (tra 100.0 1.9E-42 6.5E-47 295.9 25.0 190 101-290 3-194 (200)
5 1zp2_A RNA polymerase II holoe 99.9 9E-26 3.1E-30 197.1 19.1 181 107-288 28-217 (235)
6 2i53_A Cyclin K; cell cycle, t 99.9 5.5E-23 1.9E-27 181.9 20.0 181 108-288 42-248 (258)
7 2ivx_A Cyclin-T2; transcriptio 99.9 1.2E-22 4.1E-27 179.6 21.3 182 108-289 32-238 (257)
8 3rgf_B Cyclin-C; protein kinas 99.9 2.7E-22 9.2E-27 179.8 21.2 178 108-287 44-238 (285)
9 2b9r_A Human cyclin B1; cell c 99.9 2.1E-22 7.3E-27 179.1 19.9 182 108-289 39-223 (269)
10 2cch_B Cyclin A2, cyclin-A; co 99.9 1.1E-21 3.6E-26 173.8 20.4 181 108-288 40-225 (260)
11 2w96_A G1/S-specific cyclin-D1 99.9 6.5E-21 2.2E-25 169.7 22.2 186 108-293 58-259 (271)
12 2pk2_A Cyclin-T1, protein TAT; 99.9 6.1E-22 2.1E-26 182.5 14.4 182 108-289 39-245 (358)
13 1g3n_C V-cyclin; cyclin-depend 99.9 6.1E-20 2.1E-24 162.2 20.7 184 108-291 52-248 (257)
14 2f2c_A Cyclin homolog, V-cycli 99.8 3.2E-19 1.1E-23 157.3 21.6 183 108-290 53-247 (254)
15 1jkw_A Cyclin H; cell cycle, c 99.8 3.8E-19 1.3E-23 161.9 21.6 184 104-287 53-257 (323)
16 1w98_B Cyclin E, G1/S-specific 99.8 3.7E-18 1.3E-22 152.7 20.3 177 108-291 51-242 (283)
17 3g33_B CCND3 protein; Ser/Thr 99.8 1.2E-17 4.2E-22 150.8 20.4 186 108-293 72-269 (306)
18 3k1f_M Transcription initiatio 99.8 8E-20 2.7E-24 145.9 3.0 66 4-69 20-88 (197)
19 1dl6_A Transcription factor II 99.7 1.8E-18 6.2E-23 116.1 4.5 47 5-51 11-57 (58)
20 1pft_A TFIIB, PFTFIIBN; N-term 99.7 5.6E-17 1.9E-21 106.2 5.4 49 1-49 1-49 (50)
21 1f5q_B Gamma herpesvirus cycli 99.5 1.6E-12 5.6E-17 113.9 19.9 182 109-292 51-243 (252)
22 1ais_B TFB TFIIB, protein (tra 99.4 5.9E-13 2E-17 112.9 11.5 91 111-201 109-199 (200)
23 4bbr_M Transcription initiatio 99.3 7.1E-12 2.4E-16 114.6 11.3 109 201-309 126-242 (345)
24 1c9b_A General transcription f 99.2 3.8E-11 1.3E-15 102.2 10.6 91 110-200 102-192 (207)
25 3k7a_M Transcription initiatio 99.1 9.2E-11 3.1E-15 107.5 5.2 105 204-308 129-241 (345)
26 1zp2_A RNA polymerase II holoe 98.3 5.1E-06 1.8E-10 71.7 12.5 85 205-289 32-125 (235)
27 3h4c_A Transcription factor TF 97.9 0.00035 1.2E-08 57.3 13.2 108 111-219 16-131 (260)
28 2ivx_A Cyclin-T2; transcriptio 97.8 0.00024 8.1E-09 61.9 12.5 67 205-271 35-101 (257)
29 2i53_A Cyclin K; cell cycle, t 97.8 0.00012 4.2E-09 63.8 10.5 68 205-272 45-112 (258)
30 1jkw_A Cyclin H; cell cycle, c 97.8 0.00016 5.4E-09 65.3 11.4 84 206-289 62-154 (323)
31 3rgf_B Cyclin-C; protein kinas 97.7 0.0003 1E-08 62.3 11.8 85 205-289 47-148 (285)
32 2b9r_A Human cyclin B1; cell c 97.5 0.00088 3E-08 58.7 11.4 85 205-289 42-129 (269)
33 3m03_A ORC6, origin recognitio 97.5 0.00042 1.4E-08 50.3 7.5 82 208-292 6-94 (95)
34 2pk2_A Cyclin-T1, protein TAT; 97.4 0.00037 1.3E-08 63.7 8.5 67 205-271 42-108 (358)
35 3m03_A ORC6, origin recognitio 97.4 0.00092 3.1E-08 48.5 8.0 80 114-195 6-91 (95)
36 2w96_A G1/S-specific cyclin-D1 97.3 0.0016 5.4E-08 57.2 11.1 85 206-290 62-149 (271)
37 2cch_B Cyclin A2, cyclin-A; co 97.3 0.0013 4.5E-08 57.3 10.0 85 205-289 43-130 (260)
38 1g3n_C V-cyclin; cyclin-depend 97.1 0.0027 9.1E-08 55.2 10.1 86 205-290 55-143 (257)
39 1w98_B Cyclin E, G1/S-specific 97.0 0.0042 1.4E-07 54.8 10.4 85 206-290 55-143 (283)
40 2f2c_A Cyclin homolog, V-cycli 96.8 0.0056 1.9E-07 53.0 9.1 86 205-290 56-144 (254)
41 1qxf_A GR2, 30S ribosomal prot 96.8 0.00055 1.9E-08 45.7 1.9 31 6-36 8-38 (66)
42 3j20_W 30S ribosomal protein S 96.6 0.00089 3E-08 44.4 2.1 31 6-36 16-46 (63)
43 2jny_A Uncharacterized BCR; st 96.4 0.0019 6.3E-08 43.9 2.7 30 4-34 9-38 (67)
44 2js4_A UPF0434 protein BB2007; 96.4 0.002 6.9E-08 44.2 2.9 30 4-34 7-36 (70)
45 2xzm_6 RPS27E; ribosome, trans 96.3 0.0015 5E-08 45.5 1.9 31 6-36 33-63 (81)
46 2pk7_A Uncharacterized protein 96.3 0.002 6.7E-08 44.1 2.5 30 4-34 7-36 (69)
47 3u5c_b RP61, YS20, 40S ribosom 96.3 0.0017 5.7E-08 45.3 2.1 31 6-36 35-65 (82)
48 2jr6_A UPF0434 protein NMA0874 96.3 0.0024 8.1E-08 43.6 2.6 30 4-34 7-36 (68)
49 3g33_B CCND3 protein; Ser/Thr 96.3 0.022 7.6E-07 50.7 9.8 85 205-289 75-162 (306)
50 1vq8_Z 50S ribosomal protein L 96.2 0.0019 6.4E-08 45.9 2.1 30 5-35 27-56 (83)
51 2hf1_A Tetraacyldisaccharide-1 96.2 0.0027 9.1E-08 43.3 2.5 29 5-34 8-36 (68)
52 2r7g_A PP110, retinoblastoma-a 96.1 0.014 4.9E-07 52.6 7.9 70 108-177 216-288 (347)
53 4ell_A Retinoblastoma-associat 96.1 0.015 5.1E-07 53.6 8.1 70 108-177 280-352 (411)
54 3iz6_X 40S ribosomal protein S 96.1 0.0022 7.4E-08 45.2 1.9 31 6-36 37-67 (86)
55 2akl_A PHNA-like protein PA012 95.9 0.016 5.5E-07 44.0 5.7 29 4-34 26-54 (138)
56 3j20_Y 30S ribosomal protein S 95.8 0.0066 2.3E-07 38.7 3.0 28 6-34 20-47 (50)
57 4elj_A Retinoblastoma-associat 95.7 0.013 4.4E-07 57.1 6.1 70 108-177 525-597 (656)
58 2qdj_A Retinoblastoma-associat 95.5 0.063 2.2E-06 47.5 9.1 71 113-184 5-80 (304)
59 2r7g_A PP110, retinoblastoma-a 94.8 0.13 4.4E-06 46.3 9.2 123 149-271 104-288 (347)
60 2k4x_A 30S ribosomal protein S 93.8 0.058 2E-06 35.0 3.5 28 5-33 18-45 (55)
61 1f5q_B Gamma herpesvirus cycli 93.0 0.76 2.6E-05 39.5 10.5 84 205-288 53-139 (252)
62 4elj_A Retinoblastoma-associat 93.0 0.45 1.5E-05 46.3 9.8 71 113-184 7-82 (656)
63 3j21_i 50S ribosomal protein L 92.9 0.061 2.1E-06 37.8 2.6 31 5-36 35-65 (83)
64 3jyw_9 60S ribosomal protein L 92.8 0.074 2.5E-06 36.3 2.9 31 5-36 26-56 (72)
65 2kpi_A Uncharacterized protein 92.8 0.081 2.8E-06 34.4 2.9 28 4-34 9-38 (56)
66 2pmi_B PHO85 cyclin PHO80, ami 92.7 2.9 9.8E-05 36.6 13.6 103 111-214 78-184 (293)
67 3cc2_Z 50S ribosomal protein L 92.6 0.048 1.6E-06 40.7 1.9 30 5-35 60-89 (116)
68 2jt1_A PEFI protein; solution 92.6 0.12 4E-06 36.0 3.8 31 259-289 22-52 (77)
69 3iz5_m 60S ribosomal protein L 92.4 0.091 3.1E-06 37.6 3.0 30 5-35 36-65 (92)
70 2lnb_A Z-DNA-binding protein 1 92.3 0.26 9E-06 33.9 5.1 42 156-197 23-64 (80)
71 1ffk_W Ribosomal protein L37AE 92.1 0.07 2.4E-06 36.6 2.1 31 5-36 27-57 (73)
72 3izc_m 60S ribosomal protein R 91.9 0.099 3.4E-06 37.4 2.7 30 5-35 36-65 (92)
73 2qdj_A Retinoblastoma-associat 91.9 0.78 2.7E-05 40.5 9.1 70 208-278 6-80 (304)
74 2k5r_A Uncharacterized protein 91.4 0.084 2.9E-06 38.4 1.9 30 4-34 7-63 (97)
75 3h4c_A Transcription factor TF 91.4 0.66 2.2E-05 38.2 7.3 63 205-267 16-81 (260)
76 4ell_A Retinoblastoma-associat 91.2 0.38 1.3E-05 44.2 6.6 79 208-286 286-384 (411)
77 4a17_Y RPL37A, 60S ribosomal p 90.3 0.12 4.2E-06 37.6 1.9 29 5-34 36-64 (103)
78 2w7n_A TRFB transcriptional re 89.9 0.71 2.4E-05 33.8 5.8 52 243-299 21-73 (101)
79 2pmi_B PHO85 cyclin PHO80, ami 89.5 8.5 0.00029 33.6 13.4 92 198-289 71-166 (293)
80 1qyp_A RNA polymerase II; tran 88.7 0.24 8.3E-06 32.2 2.3 30 6-35 16-54 (57)
81 3j21_g 50S ribosomal protein L 88.7 0.15 5.1E-06 32.4 1.2 25 4-33 13-37 (51)
82 1twf_L ABC10-alpha, DNA-direct 88.5 0.22 7.4E-06 33.9 2.0 26 7-34 30-56 (70)
83 2p7v_B Sigma-70, RNA polymeras 88.2 0.84 2.9E-05 30.3 4.9 34 260-293 24-57 (68)
84 1nui_A DNA primase/helicase; z 88.2 0.28 9.7E-06 42.1 3.1 28 5-33 14-42 (255)
85 1jhg_A Trp operon repressor; c 88.0 0.34 1.1E-05 35.5 2.9 27 260-286 57-83 (101)
86 1uxc_A FRUR (1-57), fructose r 87.6 0.52 1.8E-05 31.5 3.5 22 262-283 1-22 (65)
87 2heo_A Z-DNA binding protein 1 86.9 0.86 3E-05 30.4 4.3 32 258-289 22-53 (67)
88 1k81_A EIF-2-beta, probable tr 86.6 0.24 8.1E-06 29.0 1.1 27 7-33 2-30 (36)
89 1xn7_A Hypothetical protein YH 86.4 0.88 3E-05 31.6 4.2 30 260-289 15-44 (78)
90 1tc3_C Protein (TC3 transposas 86.2 0.68 2.3E-05 28.0 3.3 25 261-285 21-45 (51)
91 2apo_B Ribosome biogenesis pro 86.2 0.27 9.4E-06 32.2 1.4 27 1-34 2-28 (60)
92 1qbj_A Protein (double-strande 86.0 1.1 3.7E-05 31.4 4.5 30 259-288 25-54 (81)
93 2o8x_A Probable RNA polymerase 85.9 0.99 3.4E-05 29.8 4.3 34 260-293 30-63 (70)
94 1j1v_A Chromosomal replication 85.8 5.6 0.00019 28.4 8.5 70 203-289 2-75 (94)
95 4ham_A LMO2241 protein; struct 85.7 0.68 2.3E-05 35.5 3.7 30 259-288 35-65 (134)
96 2jpc_A SSRB; DNA binding prote 85.3 0.76 2.6E-05 29.6 3.3 30 260-289 12-41 (61)
97 1je8_A Nitrate/nitrite respons 85.2 1.4 4.9E-05 30.5 4.9 31 260-290 35-65 (82)
98 1wii_A Hypothetical UPF0222 pr 85.0 0.54 1.8E-05 33.2 2.6 31 5-35 23-58 (85)
99 1qgp_A Protein (double strande 84.4 0.99 3.4E-05 31.1 3.7 29 260-288 30-58 (77)
100 3neu_A LIN1836 protein; struct 84.3 1.1 3.9E-05 33.8 4.4 30 259-288 34-64 (125)
101 1fse_A GERE; helix-turn-helix 83.8 1.8 6E-05 28.8 4.8 31 260-290 25-55 (74)
102 1ku3_A Sigma factor SIGA; heli 83.7 1.7 6E-05 29.1 4.8 31 260-290 29-59 (73)
103 1t6s_A Conserved hypothetical 83.5 4.6 0.00016 32.1 7.7 106 150-288 9-132 (162)
104 2htj_A P fimbrial regulatory p 83.2 1.5 5.2E-05 30.1 4.4 29 260-288 13-41 (81)
105 3ulq_B Transcriptional regulat 83.2 1.4 4.8E-05 31.3 4.2 30 260-289 43-72 (90)
106 3tqn_A Transcriptional regulat 83.1 1.1 3.7E-05 33.3 3.7 30 259-288 30-60 (113)
107 3i4p_A Transcriptional regulat 83.1 1.9 6.4E-05 34.1 5.4 31 259-289 15-45 (162)
108 1tty_A Sigma-A, RNA polymerase 83.1 1.8 6.2E-05 30.2 4.8 33 260-292 37-69 (87)
109 2y75_A HTH-type transcriptiona 82.8 3.5 0.00012 31.0 6.7 45 245-289 9-54 (129)
110 3hug_A RNA polymerase sigma fa 82.7 0.9 3.1E-05 32.2 3.0 32 260-291 52-83 (92)
111 6rxn_A Rubredoxin; electron tr 82.5 0.54 1.9E-05 29.1 1.5 6 26-31 32-37 (46)
112 2x48_A CAG38821; archeal virus 82.5 0.93 3.2E-05 28.5 2.8 24 260-283 30-53 (55)
113 2b0l_A GTP-sensing transcripti 82.1 1.5 5E-05 32.0 4.1 29 260-288 41-70 (102)
114 2kv1_A Methionine-R-sulfoxide 81.9 0.93 3.2E-05 34.2 2.9 36 16-51 11-49 (124)
115 3lwf_A LIN1550 protein, putati 81.8 2.6 8.7E-05 33.4 5.7 45 245-289 27-72 (159)
116 1x3u_A Transcriptional regulat 81.7 2.3 8E-05 28.7 4.9 31 260-290 30-60 (79)
117 1gh9_A 8.3 kDa protein (gene M 81.7 0.7 2.4E-05 31.4 2.0 28 5-35 4-31 (71)
118 1dxg_A Desulforedoxin; non-hem 81.5 0.83 2.8E-05 26.6 2.0 26 5-32 6-31 (36)
119 2w48_A Sorbitol operon regulat 81.5 1.9 6.4E-05 38.1 5.3 31 258-288 18-48 (315)
120 2k02_A Ferrous iron transport 81.4 1.1 3.8E-05 31.8 3.0 30 260-289 15-44 (87)
121 4ich_A Transcriptional regulat 81.3 1.3 4.3E-05 38.8 4.1 108 167-284 43-163 (311)
122 1tfi_A Transcriptional elongat 81.3 1.2 4.2E-05 28.0 2.9 29 5-33 9-46 (50)
123 3by6_A Predicted transcription 81.2 1.4 4.7E-05 33.5 3.7 29 260-288 33-62 (126)
124 3e6c_C CPRK, cyclic nucleotide 81.0 5.7 0.0002 33.1 8.1 29 260-288 176-204 (250)
125 2l8n_A Transcriptional repress 81.0 0.79 2.7E-05 30.8 2.0 22 261-282 9-30 (67)
126 2ek5_A Predicted transcription 80.8 1.6 5.6E-05 33.2 4.1 30 259-288 25-55 (129)
127 3iwf_A Transcription regulator 80.8 5.8 0.0002 29.1 7.0 26 260-285 34-59 (107)
128 3c57_A Two component transcrip 80.7 2.1 7.2E-05 30.5 4.5 31 260-290 41-71 (95)
129 2heo_A Z-DNA binding protein 1 80.7 3.3 0.00011 27.5 5.1 32 162-193 20-51 (67)
130 3h0g_I DNA-directed RNA polyme 80.6 1.1 3.6E-05 33.5 2.9 29 6-35 5-37 (113)
131 2p5k_A Arginine repressor; DNA 80.0 3.4 0.00012 26.6 5.0 27 259-285 17-48 (64)
132 1q1h_A TFE, transcription fact 79.9 2.3 8E-05 30.9 4.6 32 258-289 30-61 (110)
133 3lwf_A LIN1550 protein, putati 79.8 3.9 0.00013 32.3 6.1 46 149-194 26-71 (159)
134 4rxn_A Rubredoxin; electron tr 79.7 0.95 3.3E-05 29.0 2.0 11 25-35 4-14 (54)
135 2z99_A Putative uncharacterize 79.6 25 0.00085 29.3 11.2 43 149-195 16-58 (219)
136 3r0a_A Putative transcriptiona 79.5 3.1 0.00011 31.2 5.3 38 251-288 31-69 (123)
137 3o9x_A Uncharacterized HTH-typ 79.2 0.83 2.9E-05 34.7 1.9 33 4-36 1-48 (133)
138 2pn6_A ST1022, 150AA long hypo 78.9 3.4 0.00012 31.8 5.5 31 259-289 15-45 (150)
139 1oyi_A Double-stranded RNA-bin 78.8 2.2 7.7E-05 29.8 3.9 27 262-288 31-57 (82)
140 2dbb_A Putative HTH-type trans 78.8 2.9 9.8E-05 32.4 5.0 30 259-288 21-50 (151)
141 2cg4_A Regulatory protein ASNC 78.8 3 0.0001 32.4 5.1 31 259-289 20-50 (152)
142 2cfx_A HTH-type transcriptiona 78.6 3 0.0001 32.0 5.1 30 259-288 17-46 (144)
143 1e8j_A Rubredoxin; iron-sulfur 78.6 0.97 3.3E-05 28.7 1.7 13 24-36 3-15 (52)
144 3lsg_A Two-component response 78.5 5.8 0.0002 28.3 6.4 34 252-285 10-43 (103)
145 2e1c_A Putative HTH-type trans 78.1 3 0.0001 33.3 5.0 30 260-289 40-69 (171)
146 2cyy_A Putative HTH-type trans 78.1 3.2 0.00011 32.2 5.1 31 259-289 19-49 (151)
147 2jt1_A PEFI protein; solution 77.9 4.3 0.00015 27.9 5.1 30 165-194 22-51 (77)
148 3t8r_A Staphylococcus aureus C 77.7 2.4 8.4E-05 32.8 4.3 44 246-289 12-56 (143)
149 3la7_A Global nitrogen regulat 77.5 6.1 0.00021 32.8 7.1 31 259-289 191-221 (243)
150 2k9s_A Arabinose operon regula 77.4 4.5 0.00015 29.2 5.5 39 247-285 6-44 (107)
151 1i1g_A Transcriptional regulat 77.4 3.5 0.00012 31.3 5.1 30 259-288 16-45 (141)
152 3mn2_A Probable ARAC family tr 77.1 6.5 0.00022 28.3 6.3 36 249-285 7-42 (108)
153 1p4w_A RCSB; solution structur 77.1 3 0.0001 30.2 4.3 29 261-289 49-77 (99)
154 3u50_C Telomerase-associated p 77.1 1.3 4.4E-05 35.7 2.5 26 6-33 43-68 (172)
155 1j5y_A Transcriptional regulat 77.0 4.2 0.00014 32.9 5.7 30 259-288 34-63 (187)
156 3dv8_A Transcriptional regulat 77.0 5.4 0.00019 32.2 6.5 29 260-288 168-196 (220)
157 2rnj_A Response regulator prot 76.9 2.1 7.2E-05 30.1 3.4 31 260-290 43-73 (91)
158 3b02_A Transcriptional regulat 76.8 4.8 0.00016 32.1 6.0 30 260-289 138-167 (195)
159 2d1h_A ST1889, 109AA long hypo 76.7 3 0.0001 29.7 4.4 30 259-288 34-63 (109)
160 2p5v_A Transcriptional regulat 76.6 3.5 0.00012 32.3 5.0 30 259-288 22-51 (162)
161 3oou_A LIN2118 protein; protei 76.5 4.9 0.00017 29.0 5.5 39 246-285 7-45 (108)
162 2ia0_A Putative HTH-type trans 76.5 3.5 0.00012 32.9 5.0 31 259-289 29-59 (171)
163 1twf_I B12.6, DNA-directed RNA 76.3 1 3.5E-05 34.1 1.7 30 6-35 5-37 (122)
164 1ylf_A RRF2 family protein; st 76.2 5 0.00017 31.1 5.8 42 246-288 15-57 (149)
165 1gnf_A Transcription factor GA 76.1 0.73 2.5E-05 28.5 0.6 30 5-34 4-35 (46)
166 2aus_D NOP10, ribosome biogene 76.0 0.89 3.1E-05 29.8 1.0 27 1-34 1-27 (60)
167 3t8r_A Staphylococcus aureus C 75.9 4.6 0.00016 31.2 5.4 44 151-194 12-55 (143)
168 3e97_A Transcriptional regulat 75.8 5.3 0.00018 32.7 6.2 29 260-288 174-202 (231)
169 2kao_A Methionine-R-sulfoxide 75.8 2.3 8E-05 32.0 3.4 31 20-50 16-48 (124)
170 3frw_A Putative Trp repressor 75.8 4.8 0.00016 29.6 5.0 34 254-287 51-84 (107)
171 1jko_C HIN recombinase, DNA-in 75.6 0.96 3.3E-05 27.6 1.1 23 262-284 22-44 (52)
172 2gau_A Transcriptional regulat 75.5 8.5 0.00029 31.4 7.4 31 259-289 178-208 (232)
173 3ga8_A HTH-type transcriptiona 75.4 1.1 3.9E-05 30.9 1.6 30 5-34 2-46 (78)
174 2fmy_A COOA, carbon monoxide o 75.1 6.2 0.00021 32.0 6.4 30 260-289 166-195 (220)
175 1d0q_A DNA primase; zinc-bindi 75.1 2 6.7E-05 31.4 2.9 26 6-31 38-65 (103)
176 2pg4_A Uncharacterized protein 74.8 8 0.00028 27.1 6.1 31 258-288 27-58 (95)
177 4gat_A Nitrogen regulatory pro 74.6 0.75 2.6E-05 30.8 0.4 32 3-34 7-40 (66)
178 2w25_A Probable transcriptiona 74.6 4.4 0.00015 31.3 5.0 30 259-288 19-48 (150)
179 3oio_A Transcriptional regulat 74.3 5.8 0.0002 28.9 5.4 30 256-285 18-47 (113)
180 3kor_A Possible Trp repressor; 74.2 14 0.00049 27.6 7.4 33 254-286 68-100 (119)
181 3ryp_A Catabolite gene activat 74.1 5 0.00017 32.2 5.5 30 260-289 166-195 (210)
182 1j1v_A Chromosomal replication 73.5 5.5 0.00019 28.5 4.9 41 156-198 37-78 (94)
183 2y75_A HTH-type transcriptiona 73.2 8 0.00027 28.9 6.1 42 152-193 11-52 (129)
184 2l0k_A Stage III sporulation p 73.1 2.5 8.6E-05 30.3 3.0 23 262-284 21-43 (93)
185 1zyb_A Transcription regulator 73.0 8 0.00027 31.8 6.6 30 260-289 185-214 (232)
186 3jth_A Transcription activator 72.7 5.5 0.00019 28.1 4.8 29 260-288 35-63 (98)
187 2zcw_A TTHA1359, transcription 72.6 5.7 0.0002 31.8 5.5 29 260-288 145-173 (202)
188 2lfw_A PHYR sigma-like domain; 72.5 5.2 0.00018 31.1 5.0 34 260-293 108-141 (157)
189 3qt1_I DNA-directed RNA polyme 72.3 2 6.7E-05 33.1 2.3 28 7-34 26-56 (133)
190 2oz6_A Virulence factor regula 72.1 5.8 0.0002 31.7 5.5 30 260-289 163-192 (207)
191 3fx3_A Cyclic nucleotide-bindi 71.9 8.2 0.00028 31.6 6.5 31 259-289 176-206 (237)
192 1v4r_A Transcriptional repress 71.9 0.94 3.2E-05 32.8 0.4 29 260-288 33-62 (102)
193 3cuo_A Uncharacterized HTH-typ 71.9 5.5 0.00019 27.9 4.7 30 259-288 36-65 (99)
194 3dkw_A DNR protein; CRP-FNR, H 71.8 5.2 0.00018 32.5 5.2 31 259-289 176-206 (227)
195 1y0u_A Arsenical resistance op 71.6 4.9 0.00017 28.3 4.3 29 260-288 42-70 (96)
196 3v2d_5 50S ribosomal protein L 71.3 1.1 3.9E-05 29.3 0.7 23 5-33 30-52 (60)
197 1dx8_A Rubredoxin; electron tr 71.3 2.4 8.1E-05 28.7 2.3 12 24-35 7-18 (70)
198 2o3f_A Putative HTH-type trans 70.5 3.6 0.00012 30.4 3.4 25 261-285 39-63 (111)
199 3bro_A Transcriptional regulat 70.3 9.3 0.00032 28.4 6.0 29 260-288 49-77 (141)
200 3kcc_A Catabolite gene activat 70.0 9.5 0.00033 32.0 6.5 30 260-289 216-245 (260)
201 3mzy_A RNA polymerase sigma-H 69.9 3.2 0.00011 31.9 3.2 33 260-292 123-155 (164)
202 2x4h_A Hypothetical protein SS 69.8 16 0.00054 27.3 7.2 31 258-288 28-58 (139)
203 2ct7_A Ring finger protein 31; 69.6 4.1 0.00014 28.6 3.4 27 7-34 27-53 (86)
204 2kn9_A Rubredoxin; metalloprot 69.4 2.6 8.8E-05 29.4 2.2 16 22-37 25-40 (81)
205 1s7o_A Hypothetical UPF0122 pr 69.2 5.1 0.00018 29.6 4.1 30 260-289 37-66 (113)
206 1neq_A DNA-binding protein NER 69.2 4.9 0.00017 27.2 3.6 24 259-282 20-43 (74)
207 2e9h_A EIF-5, eukaryotic trans 68.9 3.6 0.00012 32.5 3.2 28 6-33 104-135 (157)
208 1xsv_A Hypothetical UPF0122 pr 68.9 5.1 0.00018 29.6 4.0 30 260-289 40-69 (113)
209 3k69_A Putative transcription 68.8 6.4 0.00022 31.1 4.8 43 246-289 13-56 (162)
210 3mkl_A HTH-type transcriptiona 68.8 9.5 0.00032 28.0 5.6 38 246-284 9-46 (120)
211 1rzs_A Antirepressor, regulato 68.7 3.7 0.00013 26.5 2.8 20 262-281 11-30 (61)
212 3k2z_A LEXA repressor; winged 68.5 7.5 0.00026 31.5 5.3 33 256-288 19-51 (196)
213 2kko_A Possible transcriptiona 68.4 8.2 0.00028 27.9 5.0 29 260-288 37-65 (108)
214 3mao_A Methionine-R-sulfoxide 68.4 2.5 8.5E-05 31.0 2.0 31 20-50 9-41 (105)
215 2vut_I AREA, nitrogen regulato 68.4 1.2 4.2E-05 27.0 0.3 28 7-34 3-32 (43)
216 3c7j_A Transcriptional regulat 68.3 5 0.00017 33.7 4.3 30 259-288 47-76 (237)
217 3oou_A LIN2118 protein; protei 68.2 29 0.001 24.6 12.9 50 152-210 7-56 (108)
218 3d0s_A Transcriptional regulat 68.0 12 0.00043 30.3 6.7 30 260-289 176-205 (227)
219 3edp_A LIN2111 protein; APC883 68.0 5.1 0.00018 33.7 4.3 30 259-288 30-60 (236)
220 3pvv_A Chromosomal replication 67.9 31 0.0011 24.8 10.0 72 201-289 4-78 (101)
221 2zkr_2 60S ribosomal protein L 67.7 2.2 7.4E-05 30.6 1.5 22 7-32 18-39 (97)
222 2zcm_A Biofilm operon icaabcd 67.7 9.7 0.00033 29.8 5.8 42 241-283 7-49 (192)
223 2elh_A CG11849-PA, LD40883P; s 67.6 12 0.00041 25.9 5.6 25 262-286 39-63 (87)
224 3pqk_A Biofilm growth-associat 67.4 6.8 0.00023 27.9 4.4 29 260-288 35-63 (102)
225 3t72_q RNA polymerase sigma fa 67.2 6.4 0.00022 28.4 4.1 25 260-284 38-62 (99)
226 1z4h_A TORI, TOR inhibition pr 67.0 5.1 0.00017 26.3 3.3 23 262-284 11-33 (66)
227 1ylf_A RRF2 family protein; st 67.0 7.4 0.00025 30.1 4.8 44 149-193 13-56 (149)
228 1j9i_A GPNU1 DBD;, terminase s 66.9 2.9 0.0001 27.7 2.0 22 262-283 3-24 (68)
229 3iwz_A CAP-like, catabolite ac 66.9 8.7 0.0003 31.2 5.5 30 260-289 186-215 (230)
230 2g2k_A EIF-5, eukaryotic trans 66.9 3.9 0.00013 32.7 3.1 28 6-33 97-128 (170)
231 4esj_A Type-2 restriction enzy 66.8 3.2 0.00011 34.9 2.6 30 5-34 34-66 (257)
232 3nrv_A Putative transcriptiona 66.6 16 0.00055 27.4 6.7 28 261-288 54-81 (148)
233 2v3b_B Rubredoxin 2, rubredoxi 66.6 2.8 9.6E-05 26.9 1.8 12 25-36 4-15 (55)
234 1qgp_A Protein (double strande 66.5 12 0.00042 25.4 5.3 29 166-194 30-58 (77)
235 1sfx_A Conserved hypothetical 66.5 7.1 0.00024 27.6 4.3 29 260-288 33-61 (109)
236 3h0g_L DNA-directed RNA polyme 66.3 3 0.0001 27.6 1.9 24 7-32 23-46 (63)
237 3f8m_A GNTR-family protein tra 66.2 5.8 0.0002 33.6 4.3 30 259-288 33-63 (248)
238 1yk4_A Rubredoxin, RD; electro 66.1 2.8 9.7E-05 26.5 1.7 12 25-36 3-14 (52)
239 2wv0_A YVOA, HTH-type transcri 66.1 6 0.0002 33.4 4.4 30 259-288 31-61 (243)
240 1ft9_A Carbon monoxide oxidati 66.1 5.9 0.0002 32.2 4.3 30 260-289 162-191 (222)
241 1hw1_A FADR, fatty acid metabo 65.9 5.9 0.0002 33.0 4.3 30 259-288 28-58 (239)
242 2zjr_Z 50S ribosomal protein L 65.2 2.7 9.4E-05 27.5 1.6 24 5-34 30-53 (60)
243 3bwg_A Uncharacterized HTH-typ 65.1 6.2 0.00021 33.2 4.3 30 259-288 26-56 (239)
244 2dk5_A DNA-directed RNA polyme 65.0 12 0.0004 26.5 5.0 30 259-288 34-63 (91)
245 1ug2_A 2610100B20RIK gene prod 65.0 18 0.00062 25.6 5.8 40 250-289 43-84 (95)
246 1bl0_A Protein (multiple antib 64.9 10 0.00035 28.3 5.1 39 246-285 13-51 (129)
247 1tty_A Sigma-A, RNA polymerase 64.8 9.4 0.00032 26.4 4.5 34 166-199 37-70 (87)
248 2hzt_A Putative HTH-type trans 64.8 13 0.00045 26.7 5.5 31 259-289 25-56 (107)
249 1uxc_A FRUR (1-57), fructose r 64.7 8.4 0.00029 25.4 4.0 45 168-218 1-48 (65)
250 4ev0_A Transcription regulator 64.6 5.5 0.00019 32.1 3.8 30 260-289 162-191 (216)
251 1qbj_A Protein (double-strande 64.5 14 0.00049 25.4 5.3 34 161-194 19-54 (81)
252 1ku9_A Hypothetical protein MJ 64.4 9.3 0.00032 28.7 4.9 30 259-288 39-68 (152)
253 2l1u_A MSRB2, methionine-R-sul 64.3 3.7 0.00013 31.8 2.4 32 20-51 33-66 (143)
254 1uly_A Hypothetical protein PH 64.0 11 0.00038 30.6 5.4 29 260-288 32-60 (192)
255 3omt_A Uncharacterized protein 64.0 5.5 0.00019 26.2 3.1 23 261-283 21-43 (73)
256 1on2_A Transcriptional regulat 63.6 14 0.00047 27.8 5.7 29 260-288 21-49 (142)
257 2xi8_A Putative transcription 63.5 5.9 0.0002 25.2 3.1 24 260-283 13-36 (66)
258 3pvv_A Chromosomal replication 63.5 11 0.00039 27.2 4.8 41 156-198 41-81 (101)
259 3e0o_A Peptide methionine sulf 63.4 3.8 0.00013 31.7 2.3 32 19-50 37-70 (144)
260 2k8d_A Peptide methionine sulf 63.4 4.1 0.00014 31.8 2.5 33 19-51 56-90 (151)
261 3eet_A Putative GNTR-family tr 63.3 7 0.00024 33.7 4.3 31 259-289 50-81 (272)
262 3eco_A MEPR; mutlidrug efflux 63.1 12 0.00041 27.8 5.2 29 260-288 46-74 (139)
263 2r1j_L Repressor protein C2; p 63.0 6.1 0.00021 25.3 3.1 22 261-282 18-39 (68)
264 3sxy_A Transcriptional regulat 62.9 6.2 0.00021 32.5 3.8 30 259-288 33-62 (218)
265 1x3u_A Transcriptional regulat 62.8 21 0.00071 23.7 6.0 32 167-198 31-62 (79)
266 3cxk_A Methionine-R-sulfoxide 62.7 3.7 0.00013 32.5 2.2 32 20-51 69-102 (164)
267 1l3l_A Transcriptional activat 62.5 9.3 0.00032 31.8 4.9 30 260-289 187-216 (234)
268 1r69_A Repressor protein CI; g 62.5 6.2 0.00021 25.4 3.1 23 260-282 13-35 (69)
269 1s24_A Rubredoxin 2; electron 62.4 3.3 0.00011 29.3 1.6 16 22-37 33-48 (87)
270 3kz3_A Repressor protein CI; f 62.3 5.9 0.0002 26.7 3.0 23 260-282 24-46 (80)
271 2fu4_A Ferric uptake regulatio 62.2 13 0.00045 25.2 4.9 30 260-289 32-66 (83)
272 3t76_A VANU, transcriptional r 62.2 6.2 0.00021 27.7 3.1 24 260-283 36-59 (88)
273 1zug_A Phage 434 CRO protein; 62.0 6.4 0.00022 25.5 3.1 23 260-282 15-37 (71)
274 1zx4_A P1 PARB, plasmid partit 62.0 16 0.00054 29.8 5.9 25 260-284 23-47 (192)
275 2kae_A GATA-type transcription 61.9 1.7 5.7E-05 29.5 0.0 9 25-33 31-39 (71)
276 2jpc_A SSRB; DNA binding prote 61.9 9 0.00031 24.2 3.7 32 167-198 13-44 (61)
277 3ihu_A Transcriptional regulat 61.8 6.5 0.00022 32.5 3.7 30 259-288 37-66 (222)
278 3fmy_A HTH-type transcriptiona 61.8 4.5 0.00015 27.0 2.2 22 260-281 23-44 (73)
279 1or7_A Sigma-24, RNA polymeras 61.7 5.8 0.0002 31.5 3.3 32 260-291 155-186 (194)
280 1r1u_A CZRA, repressor protein 61.6 9.7 0.00033 27.3 4.3 29 260-288 38-66 (106)
281 3hcg_A Peptide methionine sulf 61.6 3.9 0.00013 31.8 2.1 31 20-50 39-71 (146)
282 2k9q_A Uncharacterized protein 61.5 6.5 0.00022 26.2 3.1 23 260-282 14-36 (77)
283 1l1o_C Replication protein A 7 61.5 3.9 0.00013 33.0 2.2 26 7-34 45-72 (181)
284 3bpv_A Transcriptional regulat 61.1 45 0.0015 24.3 8.3 30 259-288 41-70 (138)
285 2oqg_A Possible transcriptiona 61.1 9 0.00031 27.6 4.1 29 260-288 33-61 (114)
286 3dwd_A ADP-ribosylation factor 61.1 2.7 9.3E-05 32.8 1.1 32 2-34 36-68 (147)
287 2bgc_A PRFA; bacterial infecti 61.0 14 0.00048 30.3 5.8 30 259-288 166-197 (238)
288 3hcj_A MSRB, peptide methionin 60.9 3.7 0.00013 32.2 1.8 32 19-50 45-78 (154)
289 2hku_A A putative transcriptio 60.8 15 0.0005 29.4 5.7 40 243-283 22-61 (215)
290 2lkp_A Transcriptional regulat 60.7 17 0.00059 26.4 5.6 28 260-287 44-71 (119)
291 2a6c_A Helix-turn-helix motif; 60.6 22 0.00075 24.0 5.8 25 259-283 29-53 (83)
292 3szt_A QCSR, quorum-sensing co 60.5 8.1 0.00028 32.3 4.1 30 260-289 189-218 (237)
293 2vn2_A DNAD, chromosome replic 60.4 26 0.00088 26.2 6.6 28 262-289 52-79 (128)
294 3fm5_A Transcriptional regulat 60.4 12 0.00041 28.3 4.8 31 258-288 51-81 (150)
295 3tgn_A ADC operon repressor AD 60.3 14 0.00047 27.7 5.2 27 262-288 52-78 (146)
296 2nnn_A Probable transcriptiona 60.3 24 0.00081 26.0 6.5 28 261-288 52-79 (140)
297 1ovx_A ATP-dependent CLP prote 60.0 3.1 0.00011 27.8 1.1 25 5-31 18-47 (67)
298 3b73_A PHIH1 repressor-like pr 59.9 9.3 0.00032 28.2 3.9 29 261-289 27-57 (111)
299 3r0a_A Putative transcriptiona 59.9 15 0.00052 27.2 5.2 38 157-194 31-69 (123)
300 4a0z_A Transcription factor FA 59.8 7.9 0.00027 31.5 3.8 28 259-286 24-51 (190)
301 2lnb_A Z-DNA-binding protein 1 59.7 10 0.00035 26.0 3.7 45 251-295 24-68 (80)
302 2hs5_A Putative transcriptiona 59.7 7.3 0.00025 32.7 3.7 30 259-288 49-78 (239)
303 2qvo_A Uncharacterized protein 59.7 22 0.00076 24.7 5.9 30 259-288 28-57 (95)
304 3b7h_A Prophage LP1 protein 11 59.7 7.4 0.00025 25.7 3.1 23 260-282 19-41 (78)
305 1xd7_A YWNA; structural genomi 59.6 19 0.00065 27.6 5.9 43 244-289 8-51 (145)
306 3hrs_A Metalloregulator SCAR; 59.6 9.8 0.00033 31.4 4.4 30 259-288 18-47 (214)
307 3qq6_A HTH-type transcriptiona 59.2 7.6 0.00026 26.2 3.1 25 260-284 22-46 (78)
308 2q0o_A Probable transcriptiona 59.1 9 0.00031 31.9 4.2 30 260-289 189-218 (236)
309 2b5a_A C.BCLI; helix-turn-heli 59.1 7.7 0.00026 25.6 3.1 23 260-282 22-44 (77)
310 1adr_A P22 C2 repressor; trans 58.6 7.8 0.00027 25.4 3.1 23 261-283 18-40 (76)
311 1y7y_A C.AHDI; helix-turn-heli 58.6 8.1 0.00028 25.2 3.1 23 260-282 25-47 (74)
312 3dfx_A Trans-acting T-cell-spe 58.3 1.8 6E-05 28.7 -0.3 29 6-34 8-38 (63)
313 2kpj_A SOS-response transcript 58.2 12 0.00042 26.0 4.2 24 259-282 20-43 (94)
314 1vk6_A NADH pyrophosphatase; 1 58.2 5.9 0.0002 34.2 2.9 29 6-35 108-136 (269)
315 2p57_A GTPase-activating prote 57.9 2 6.9E-05 33.4 -0.1 31 3-34 36-67 (144)
316 3bs3_A Putative DNA-binding pr 57.9 8.4 0.00029 25.3 3.1 24 260-283 22-45 (76)
317 2f2e_A PA1607; transcription f 57.7 16 0.00056 28.0 5.2 30 260-289 36-65 (146)
318 1r1t_A Transcriptional repress 57.6 22 0.00076 26.3 5.8 29 260-288 58-86 (122)
319 2fbh_A Transcriptional regulat 57.6 18 0.0006 27.0 5.4 31 258-288 49-79 (146)
320 3df8_A Possible HXLR family tr 57.4 17 0.00059 26.4 5.1 30 260-289 39-71 (111)
321 2l1p_A DNA-binding protein SAT 57.2 8.5 0.00029 26.7 2.9 22 261-282 32-53 (83)
322 4ghj_A Probable transcriptiona 57.1 8.1 0.00028 27.9 3.1 22 260-281 48-69 (101)
323 2p7v_B Sigma-70, RNA polymeras 57.1 13 0.00044 24.2 3.9 33 166-198 24-56 (68)
324 2iqj_A Stromal membrane-associ 57.1 2.5 8.5E-05 32.5 0.3 31 3-34 26-57 (134)
325 3s8q_A R-M controller protein; 57.0 8.6 0.0003 25.9 3.1 23 260-282 23-45 (82)
326 1je8_A Nitrate/nitrite respons 56.9 33 0.0011 23.2 6.2 32 167-198 36-67 (82)
327 3bqz_B HTH-type transcriptiona 56.9 13 0.00046 28.8 4.7 38 246-284 7-45 (194)
328 1xd7_A YWNA; structural genomi 56.8 15 0.00053 28.1 4.9 43 149-194 8-50 (145)
329 2owa_A Arfgap-like finger doma 56.8 2.5 8.7E-05 32.6 0.3 31 3-34 35-66 (138)
330 3qkx_A Uncharacterized HTH-typ 56.7 14 0.00049 28.4 4.9 39 245-284 12-51 (188)
331 2riq_A Poly [ADP-ribose] polym 56.7 5.7 0.0002 31.4 2.3 26 3-33 76-101 (160)
332 1ub9_A Hypothetical protein PH 56.6 7.6 0.00026 27.1 2.9 29 260-288 29-57 (100)
333 2gxg_A 146AA long hypothetical 56.4 18 0.00062 26.9 5.3 30 259-288 48-77 (146)
334 2olm_A Nucleoporin-like protei 56.3 2.9 9.7E-05 32.5 0.5 31 3-34 24-55 (140)
335 3knw_A Putative transcriptiona 56.3 15 0.00052 28.9 5.0 41 244-284 17-57 (212)
336 3bj6_A Transcriptional regulat 56.1 15 0.00053 27.6 4.8 29 260-288 53-81 (152)
337 3f6w_A XRE-family like protein 56.1 8.9 0.0003 25.8 3.1 24 260-283 26-49 (83)
338 2fiy_A Protein FDHE homolog; F 56.1 5.4 0.00019 35.2 2.3 29 4-32 181-216 (309)
339 1zs4_A Regulatory protein CII; 56.1 6.9 0.00024 27.3 2.4 23 262-284 25-47 (83)
340 2crw_A ARF GAP 3, ADP-ribosyla 56.0 3 0.0001 32.7 0.6 32 2-34 27-59 (149)
341 2di3_A Bacterial regulatory pr 56.0 12 0.00041 31.2 4.4 30 259-288 25-55 (239)
342 3k69_A Putative transcription 55.8 11 0.00037 29.7 3.9 43 151-194 13-55 (162)
343 3deu_A Transcriptional regulat 55.7 61 0.0021 24.9 8.5 31 258-288 65-95 (166)
344 1ku3_A Sigma factor SIGA; heli 55.6 18 0.00063 23.8 4.6 31 166-196 29-59 (73)
345 1fse_A GERE; helix-turn-helix 55.6 16 0.00055 23.8 4.3 31 167-197 26-56 (74)
346 1u8b_A ADA polyprotein; protei 55.5 11 0.00039 28.1 3.9 28 259-286 91-118 (133)
347 2ef8_A C.ECOT38IS, putative tr 55.4 9.5 0.00033 25.6 3.1 24 260-283 22-45 (84)
348 2eth_A Transcriptional regulat 55.1 17 0.00059 27.6 5.0 28 261-288 58-85 (154)
349 2wiu_B HTH-type transcriptiona 54.9 12 0.00041 25.4 3.6 24 260-283 24-47 (88)
350 3eus_A DNA-binding protein; st 54.9 9.4 0.00032 26.2 3.1 23 260-282 26-48 (86)
351 3eus_A DNA-binding protein; st 54.8 41 0.0014 22.8 6.5 49 166-223 26-74 (86)
352 4a5n_A Uncharacterized HTH-typ 54.7 25 0.00085 26.6 5.6 31 259-289 37-68 (131)
353 3clo_A Transcriptional regulat 54.7 13 0.00044 31.5 4.5 31 260-290 211-241 (258)
354 3f1b_A TETR-like transcription 54.6 16 0.00056 28.4 4.9 38 245-283 18-56 (203)
355 3ppb_A Putative TETR family tr 54.4 17 0.00058 28.1 4.9 40 244-284 12-52 (195)
356 3vp5_A Transcriptional regulat 54.4 16 0.00055 28.7 4.8 40 244-284 15-55 (189)
357 2frh_A SARA, staphylococcal ac 54.3 11 0.00037 28.0 3.6 30 260-289 52-81 (127)
358 2au3_A DNA primase; zinc ribbo 54.2 7.1 0.00024 35.8 2.9 25 7-31 36-62 (407)
359 3t72_q RNA polymerase sigma fa 54.0 43 0.0015 23.9 6.6 51 166-220 38-88 (99)
360 3lwj_A Putative TETR-family tr 53.9 18 0.0006 28.3 5.0 38 246-284 17-55 (202)
361 2qtq_A Transcriptional regulat 53.8 23 0.0008 27.7 5.8 40 244-284 19-59 (213)
362 3lcz_A YCZA, inhibitor of trap 53.7 7.1 0.00024 24.7 2.0 19 6-30 10-29 (53)
363 2l8n_A Transcriptional repress 53.6 8.1 0.00028 25.6 2.4 45 167-219 9-55 (67)
364 2ict_A Antitoxin HIGA; helix-t 53.5 13 0.00044 25.8 3.6 23 261-283 21-43 (94)
365 2ewt_A BLDD, putative DNA-bind 53.4 13 0.00046 23.9 3.5 24 260-283 20-45 (71)
366 2hin_A GP39, repressor protein 53.3 9.8 0.00034 25.6 2.8 19 263-281 12-30 (71)
367 3qp6_A CVIR transcriptional re 53.3 12 0.00042 31.9 4.1 30 260-289 211-240 (265)
368 3bd1_A CRO protein; transcript 53.3 12 0.00041 25.0 3.4 21 263-283 13-33 (79)
369 3g3z_A NMB1585, transcriptiona 53.0 29 0.001 25.8 6.0 28 261-288 45-72 (145)
370 3ech_A MEXR, multidrug resista 53.0 16 0.00056 27.2 4.5 29 260-288 50-78 (142)
371 3mky_B Protein SOPB; partition 53.0 19 0.00066 29.2 4.9 35 251-285 32-66 (189)
372 3ulq_B Transcriptional regulat 52.9 18 0.00062 25.3 4.3 31 167-197 44-74 (90)
373 2p8t_A Hypothetical protein PH 52.9 18 0.00062 29.7 4.8 30 259-288 28-57 (200)
374 1bia_A BIRA bifunctional prote 52.5 18 0.00062 31.8 5.2 31 258-288 16-46 (321)
375 2h09_A Transcriptional regulat 52.5 15 0.00053 28.0 4.3 29 260-288 53-81 (155)
376 3lsg_A Two-component response 52.5 36 0.0012 23.9 6.1 48 155-210 7-54 (103)
377 1vzi_A Desulfoferrodoxin; ferr 52.4 6.6 0.00023 29.7 2.0 30 3-34 5-34 (126)
378 3nqo_A MARR-family transcripti 52.3 18 0.00061 28.9 4.8 30 259-288 55-84 (189)
379 1xmk_A Double-stranded RNA-spe 52.2 18 0.00061 24.9 4.0 28 261-288 25-53 (79)
380 4cpa_I Metallocarboxypeptidase 52.2 3.5 0.00012 23.5 0.3 22 9-30 6-27 (38)
381 2htj_A P fimbrial regulatory p 52.1 31 0.0011 23.2 5.4 29 166-194 13-41 (81)
382 2fa5_A Transcriptional regulat 52.0 21 0.00072 27.2 5.0 30 259-288 61-90 (162)
383 3cdh_A Transcriptional regulat 52.0 24 0.00081 26.7 5.3 30 259-288 55-84 (155)
384 1t6s_A Conserved hypothetical 51.9 19 0.00066 28.4 4.7 38 246-287 11-50 (162)
385 1lmb_3 Protein (lambda repress 51.9 11 0.00038 25.9 3.1 24 260-283 29-52 (92)
386 2xzm_9 RPS31E; ribosome, trans 51.8 9.9 0.00034 31.0 3.0 28 6-34 114-141 (189)
387 3jw4_A Transcriptional regulat 51.8 20 0.00069 26.9 4.8 30 259-288 55-84 (148)
388 3q87_A Putative uncharacterize 51.8 3.6 0.00012 31.1 0.4 16 19-34 94-109 (125)
389 2ppx_A AGR_C_3184P, uncharacte 51.5 11 0.00039 26.5 3.1 22 260-281 42-63 (99)
390 1l9z_H Sigma factor SIGA; heli 51.5 1.5E+02 0.0051 27.3 18.7 28 260-287 394-421 (438)
391 1pb6_A Hypothetical transcript 51.3 20 0.00069 28.2 5.0 39 245-284 22-61 (212)
392 4aik_A Transcriptional regulat 51.2 30 0.001 26.4 5.8 31 258-288 43-73 (151)
393 3bdd_A Regulatory protein MARR 51.2 17 0.00058 26.9 4.3 29 260-288 44-72 (142)
394 2rdp_A Putative transcriptiona 51.2 22 0.00077 26.6 5.0 29 260-288 55-83 (150)
395 3f6o_A Probable transcriptiona 51.1 11 0.00038 27.6 3.1 30 259-288 29-58 (118)
396 2g7s_A Transcriptional regulat 50.9 15 0.00052 28.3 4.1 39 245-284 12-51 (194)
397 1twf_I B12.6, DNA-directed RNA 50.9 15 0.00052 27.5 3.8 28 6-33 73-109 (122)
398 1lj9_A Transcriptional regulat 50.9 21 0.00073 26.5 4.8 29 260-288 42-70 (144)
399 1z7u_A Hypothetical protein EF 50.9 19 0.00065 26.1 4.3 30 260-289 34-64 (112)
400 3kz9_A SMCR; transcriptional r 50.8 19 0.00065 28.1 4.7 38 246-284 22-60 (206)
401 3ic7_A Putative transcriptiona 50.8 1.2 4E-05 33.8 -2.6 30 259-288 32-62 (126)
402 3dcf_A Transcriptional regulat 50.8 20 0.00069 28.2 4.9 39 244-283 34-73 (218)
403 3lhq_A Acrab operon repressor 50.6 21 0.00072 28.1 5.0 39 245-284 18-57 (220)
404 2jsc_A Transcriptional regulat 50.4 11 0.00038 27.7 3.0 29 260-288 33-61 (118)
405 3g5g_A Regulatory protein; tra 50.3 12 0.00042 26.6 3.1 24 260-283 40-63 (99)
406 1u2w_A CADC repressor, cadmium 50.2 14 0.00046 27.4 3.5 30 259-288 54-83 (122)
407 2zkz_A Transcriptional repress 50.2 10 0.00034 27.0 2.6 29 260-288 40-68 (99)
408 2lk0_A RNA-binding protein 5; 50.1 7 0.00024 21.9 1.3 13 21-33 2-14 (32)
409 3bvo_A CO-chaperone protein HS 50.1 7.9 0.00027 32.0 2.3 30 4-35 9-38 (207)
410 2k9s_A Arabinose operon regula 49.9 32 0.0011 24.4 5.4 50 153-210 6-55 (107)
411 2rae_A Transcriptional regulat 49.8 22 0.00075 27.9 5.0 41 243-284 19-60 (207)
412 2crr_A Stromal membrane-associ 49.8 3.2 0.00011 32.2 -0.2 31 3-34 28-59 (141)
413 3j21_e 50S ribosomal protein L 49.7 6.2 0.00021 25.8 1.2 23 6-32 18-40 (62)
414 3col_A Putative transcription 49.6 17 0.00057 28.2 4.2 39 244-283 13-52 (196)
415 3rd3_A Probable transcriptiona 49.6 24 0.00081 27.3 5.1 39 243-282 12-51 (197)
416 3fym_A Putative uncharacterize 49.5 34 0.0012 25.5 5.7 51 164-220 13-66 (130)
417 2fq4_A Transcriptional regulat 49.5 23 0.0008 27.6 5.1 38 245-283 16-54 (192)
418 2a61_A Transcriptional regulat 49.3 19 0.00066 26.7 4.3 29 260-288 46-74 (145)
419 3cjn_A Transcriptional regulat 49.3 17 0.00059 27.7 4.1 29 260-288 65-93 (162)
420 2ds5_A CLPX, ATP-dependent CLP 49.2 6.4 0.00022 24.8 1.2 24 5-30 11-39 (51)
421 3dpj_A Transcription regulator 49.1 24 0.00082 27.4 5.1 38 245-283 12-50 (194)
422 2v57_A TETR family transcripti 49.1 14 0.00049 28.6 3.7 38 244-283 17-54 (190)
423 2yve_A Transcriptional regulat 49.0 22 0.00075 27.7 4.8 40 244-284 7-47 (185)
424 3dn7_A Cyclic nucleotide bindi 48.8 3.6 0.00012 32.7 0.0 27 260-286 167-193 (194)
425 3vpr_A Transcriptional regulat 48.8 26 0.0009 27.1 5.3 37 246-283 8-45 (190)
426 3u2r_A Regulatory protein MARR 48.8 15 0.00052 28.4 3.8 30 259-288 60-89 (168)
427 3c57_A Two component transcrip 48.7 21 0.00072 25.0 4.2 31 168-198 43-73 (95)
428 1pdn_C Protein (PRD paired); p 48.7 19 0.00064 26.1 4.1 28 261-288 33-60 (128)
429 1x57_A Endothelial differentia 48.7 21 0.00073 24.4 4.2 25 259-283 24-48 (91)
430 1tbx_A ORF F-93, hypothetical 48.6 20 0.00069 25.0 4.1 30 259-288 20-53 (99)
431 1ug2_A 2610100B20RIK gene prod 48.5 47 0.0016 23.5 5.6 41 157-197 44-86 (95)
432 2o8x_A Probable RNA polymerase 48.4 23 0.0008 22.6 4.1 31 167-197 31-61 (70)
433 3kkc_A TETR family transcripti 48.4 14 0.00049 28.2 3.5 37 246-283 17-54 (177)
434 2hr3_A Probable transcriptiona 48.3 79 0.0027 23.2 9.8 30 259-288 48-77 (147)
435 3mn2_A Probable ARAC family tr 48.2 41 0.0014 23.8 5.8 48 154-210 6-53 (108)
436 3k2z_A LEXA repressor; winged 48.2 28 0.00096 28.0 5.4 38 156-193 13-50 (196)
437 3bni_A Putative TETR-family tr 48.2 24 0.00082 28.6 5.1 39 245-284 47-86 (229)
438 3gzi_A Transcriptional regulat 48.2 23 0.0008 28.0 4.9 37 246-283 22-59 (218)
439 4b8x_A SCO5413, possible MARR- 48.1 13 0.00046 28.3 3.3 30 259-288 49-78 (147)
440 2d6y_A Putative TETR family re 48.1 33 0.0011 27.1 5.8 39 244-283 11-50 (202)
441 3cng_A Nudix hydrolase; struct 48.1 11 0.00036 30.2 2.8 29 5-33 3-34 (189)
442 3e6c_C CPRK, cyclic nucleotide 48.0 47 0.0016 27.2 7.0 29 166-194 176-204 (250)
443 2l49_A C protein; P2 bacteriop 47.9 14 0.00048 25.8 3.1 22 260-281 16-37 (99)
444 3b81_A Transcriptional regulat 47.8 26 0.00089 27.3 5.1 38 244-282 14-52 (203)
445 2pex_A Transcriptional regulat 47.8 19 0.00066 27.2 4.1 30 259-288 59-88 (153)
446 3k0l_A Repressor protein; heli 47.7 23 0.00079 27.1 4.7 29 260-288 59-87 (162)
447 2ao9_A Phage protein; structur 47.7 29 0.001 27.2 5.1 20 261-280 48-67 (155)
448 1vq8_1 50S ribosomal protein L 47.6 5 0.00017 25.8 0.5 22 7-32 19-40 (57)
449 1p4w_A RCSB; solution structur 47.5 24 0.00082 25.2 4.3 32 167-198 49-80 (99)
450 3he0_A Transcriptional regulat 47.4 34 0.0012 26.3 5.8 40 243-283 13-53 (196)
451 3dew_A Transcriptional regulat 47.4 19 0.00065 28.0 4.2 41 244-285 11-52 (206)
452 2fsw_A PG_0823 protein; alpha- 47.3 28 0.00096 24.8 4.7 31 259-289 36-67 (107)
453 3hsr_A HTH-type transcriptiona 47.3 16 0.00055 27.3 3.6 30 259-288 48-77 (140)
454 1r7j_A Conserved hypothetical 47.3 57 0.0019 22.9 6.3 44 241-288 4-47 (95)
455 3bru_A Regulatory protein, TET 47.1 24 0.00081 28.0 4.8 40 244-284 33-73 (222)
456 2pg4_A Uncharacterized protein 47.1 25 0.00086 24.4 4.4 33 162-194 25-58 (95)
457 3on4_A Transcriptional regulat 47.0 19 0.00066 27.7 4.1 39 244-283 13-52 (191)
458 1o5l_A Transcriptional regulat 46.9 5.6 0.00019 32.2 0.9 31 259-289 162-192 (213)
459 3qbm_A TETR transcriptional re 46.8 15 0.00051 28.6 3.5 38 245-283 11-49 (199)
460 2qwt_A Transcriptional regulat 46.7 24 0.00082 27.7 4.7 37 246-283 18-54 (196)
461 3trb_A Virulence-associated pr 46.6 15 0.0005 26.5 3.0 25 259-283 25-49 (104)
462 4hbl_A Transcriptional regulat 46.6 21 0.00071 26.9 4.2 29 260-288 54-82 (149)
463 3f0c_A TETR-molecule A, transc 46.6 26 0.00089 27.6 5.0 39 244-283 14-53 (216)
464 2cw1_A SN4M; lambda CRO fold, 46.4 18 0.00062 23.8 3.2 22 263-284 15-36 (65)
465 3cwr_A Transcriptional regulat 46.4 19 0.00067 28.1 4.1 39 245-284 21-60 (208)
466 2d1h_A ST1889, 109AA long hypo 46.3 34 0.0012 23.8 5.1 29 165-193 34-62 (109)
467 2nyx_A Probable transcriptiona 46.3 21 0.0007 27.7 4.2 29 260-288 58-86 (168)
468 3jsj_A Putative TETR-family tr 46.2 27 0.00093 27.0 4.9 39 244-283 12-50 (190)
469 2kdx_A HYPA, hydrogenase/ureas 46.1 8.9 0.00031 28.5 1.8 22 7-31 75-97 (119)
470 2zb9_A Putative transcriptiona 46.1 19 0.00067 28.5 4.1 37 246-283 28-65 (214)
471 3cec_A Putative antidote prote 46.1 15 0.00052 26.0 3.1 24 260-283 30-53 (104)
472 4fx0_A Probable transcriptiona 46.1 21 0.00071 27.2 4.1 32 260-293 51-82 (148)
473 1sgm_A Putative HTH-type trans 46.1 13 0.00046 28.6 3.0 40 244-284 9-49 (191)
474 3c2b_A Transcriptional regulat 46.0 26 0.00088 27.8 4.9 39 245-284 19-58 (221)
475 3op9_A PLI0006 protein; struct 45.9 18 0.00063 26.0 3.6 23 261-283 22-44 (114)
476 2fbi_A Probable transcriptiona 45.9 16 0.00056 27.0 3.4 29 260-288 49-77 (142)
477 1z91_A Organic hydroperoxide r 45.8 15 0.00051 27.5 3.2 28 261-288 54-81 (147)
478 1stz_A Heat-inducible transcri 45.7 19 0.00066 32.0 4.3 31 258-288 33-65 (338)
479 3s2w_A Transcriptional regulat 45.7 21 0.00073 27.2 4.1 29 260-288 63-91 (159)
480 1y6u_A XIS, excisionase from t 45.6 15 0.0005 24.6 2.7 23 262-284 17-39 (70)
481 2g7g_A RHA04620, putative tran 45.6 33 0.0011 27.7 5.5 41 242-284 12-52 (213)
482 4gop_C Putative uncharacterize 45.6 11 0.00038 34.9 2.8 28 6-35 309-338 (444)
483 1ryq_A DNA-directed RNA polyme 45.6 7 0.00024 26.2 1.0 31 6-49 12-42 (69)
484 2qww_A Transcriptional regulat 45.6 22 0.00075 26.8 4.1 29 260-288 54-82 (154)
485 2pij_A Prophage PFL 6 CRO; tra 45.5 37 0.0013 21.5 4.7 21 263-283 15-35 (67)
486 2jrp_A Putative cytoplasmic pr 45.5 13 0.00045 25.7 2.4 26 6-34 3-28 (81)
487 2guh_A Putative TETR-family tr 45.4 24 0.00082 28.4 4.6 41 245-286 43-84 (214)
488 3vk0_A NHTF, transcriptional r 45.3 16 0.00054 26.5 3.1 22 260-281 33-54 (114)
489 3hug_A RNA polymerase sigma fa 45.2 26 0.00088 24.2 4.1 28 168-195 54-81 (92)
490 1zk8_A Transcriptional regulat 45.0 31 0.0011 26.4 5.1 40 243-283 10-50 (183)
491 1jgs_A Multiple antibiotic res 44.9 24 0.00082 26.0 4.2 29 260-288 47-75 (138)
492 2ras_A Transcriptional regulat 44.9 30 0.001 27.3 5.1 38 245-283 15-53 (212)
493 1yyv_A Putative transcriptiona 44.8 26 0.0009 26.3 4.4 31 259-289 46-77 (131)
494 3s5r_A Transcriptional regulat 44.8 24 0.00082 27.8 4.5 39 244-283 13-52 (216)
495 3bhq_A Transcriptional regulat 44.7 39 0.0013 26.6 5.8 25 259-283 29-54 (211)
496 1jhf_A LEXA repressor; LEXA SO 44.6 30 0.001 27.8 5.1 32 256-287 20-52 (202)
497 2b5a_A C.BCLI; helix-turn-heli 44.6 61 0.0021 20.9 6.0 46 166-220 22-67 (77)
498 1t33_A Putative transcriptiona 44.6 28 0.00095 27.7 4.9 38 245-283 16-53 (224)
499 3g7r_A Putative transcriptiona 44.5 30 0.001 27.7 5.1 39 244-283 38-77 (221)
500 2k1p_A Zinc finger RAN-binding 44.5 17 0.00057 20.4 2.4 12 22-33 4-15 (33)
No 1
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=100.00 E-value=4.1e-76 Score=540.90 Aligned_cols=304 Identities=35% Similarity=0.605 Sum_probs=173.7
Q ss_pred cccCCCCCC--CCeeeeCCCCceecCCCCccccCcccccCCCcccccCCC-CCCCCCCCCCCCCCcccCCCCceeeccCC
Q psy6534 5 KVCCYEHPD--APLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEK-SGVDPSRVGGPENPLLNGSDLSTMIGPGR 81 (309)
Q Consensus 5 ~~~Cp~C~~--~~~v~D~~~G~~vC~~CG~V~~e~~id~~~ewr~f~~~~-~~~~~sr~g~~~~~~~~~~~l~t~i~~~~ 81 (309)
...||+||+ +++++|+++|++||++||+|++|++||+|||||+|++++ ++.|++|+|+|.|+++||.+|+|.|+++.
T Consensus 21 ~~~Cp~C~~~~~~lv~D~~~G~~vC~~CGlVl~e~~iD~g~EWR~f~~d~~~~~d~sRvG~~~~~~~~~~glsT~I~~~~ 100 (345)
T 4bbr_M 21 VLTCPECKVYPPKIVERFSEGDVVCALCGLVLSDKLVDTRSEWRTFSNDDHNGDDPSRVGEASNPLLDGNNLSTRIGKGE 100 (345)
T ss_dssp -CCCSSCCCSSCCEEEEGGGTEEEETTTCBEEESCCBCHHHHHTTTSCSCSSSCCSSCCEEEECHHHHCSCCCCEEECCS
T ss_pred CCcCCCCCCCCCceeEECCCCcEEeCCCCCCccCcccccCccccCCCcccccCCCcCCCCCCCCccccCCCcceeecCCC
Confidence 458999996 689999999999999999999999999999999999765 46899999999999999999999999764
Q ss_pred CCCCCCCCCcccccccccCChhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHH
Q psy6534 82 GDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIAC 161 (309)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~I~~i~~~L~Lp~~v~e~A~~~~~~~~~~~~~~gr~~~~vaaAcly~ac 161 (309)
++.........+||++..++++|++|.+|++.|.++|++|+||+.+.++|..+|+++++.++++||+.+.++|||||+||
T Consensus 101 ~~~~~~~~~L~r~q~r~~~~~~er~L~~a~~~I~~~~~~L~Lp~~v~d~A~~lyk~a~~~~~~rGrs~e~vaAAclYiAC 180 (345)
T 4bbr_M 101 TTDMRFTKELNKAQGKNVMDKKDNEVQAAFAKITMLCDAAELPKIVKDCAKEAYKLCHDEKTLKGKSMESIMAASILIGC 180 (345)
T ss_dssp SCCHHHHHHHHHHHHHTCCCCSSSSTTHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTTTTCCHHHHHHHHHHHHH
T ss_pred CcchhhHHHHHHHHHhhhcChHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccCCCHHHHHHHHHHHHH
Confidence 32101011234688887788999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCccHHHHHHHhcccHHHHHHHHHHHHHHhccc------------CCCCChHHHHHHHHhhCCCCHHHHHHHHHHH
Q psy6534 162 RQEGVPRTFKEICAVSKISKKEIGRCFKLILKALETS------------VDLITTGDFMSRFCSNLSLPNMVQKAATHIA 229 (309)
Q Consensus 162 R~~~~~~tl~eia~~~~~~~~~i~~~~~~l~~~l~~~------------~~~~~p~~~i~~~~~~L~l~~~~~~~a~~i~ 229 (309)
|++++|+|++||++++++++++|+++|+.|.+.|++. +++++|.+||.|||++|+|++++.+.|++|+
T Consensus 181 R~~~~prtl~eI~~~~~v~~keigr~~k~l~~~L~l~~~~~~~~~~~~~~~~~~p~~~i~Rf~s~L~l~~~v~~~A~~i~ 260 (345)
T 4bbr_M 181 RRAEVARTFKEIQSLIHVKTKEFGKTLNIMKNILRGKSEDGFLKIDTDNMSGAQNLTYIPRFCSHLGLPMQVTTSAEYTA 260 (345)
T ss_dssp HHTCCBCCHHHHHHHHTCCTTHHHHHHHHHHHCC----------------------------------------------
T ss_pred HhcCCCccHHHHHHHhCCCHHHHHHHHHHHHHHhCccccccccccccccCCCCCHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 9999999999999999999999999999999999864 6788999999999999999999999999999
Q ss_pred HHhhhcCccCCCChHHHHHHHHHHHHHhCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHhhcccCCCCcCC--CCCCCCCC
Q psy6534 230 RKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKLFPQDFVF--HTPIHELP 307 (309)
Q Consensus 230 ~~~~~~~l~~Gr~P~~iaaAaiyla~~~~~~~~~~~~ia~~~~vs~~ti~~~~kei~~~~~~l~~~~~~~--~~~~~~~~ 307 (309)
+.+.+.|+..||+|.+|||||||+|++++|.+++++||++++||+++||+++|+||++++.+|+|++|.. ..+++.||
T Consensus 261 ~~~~~~~i~~GR~P~~IAAAaIylAa~l~g~~~t~~eIa~v~~Vse~TIr~rykel~~~~~~l~~~~~~~~~~~~~~~l~ 340 (345)
T 4bbr_M 261 KKCKEIKEIAGKSPITIAVVSIYLNILLFQIPITAAKVGQTLQVTEGTIKSGYKILYEHRDKLVDPQLIANGVVSLDNLP 340 (345)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHhcccccCCChHHHHHHHHHHHHHHhCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCHHHhhcccCchhhCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999833 57899999
Q ss_pred C
Q psy6534 308 Q 308 (309)
Q Consensus 308 ~ 308 (309)
+
T Consensus 341 ~ 341 (345)
T 4bbr_M 341 G 341 (345)
T ss_dssp -
T ss_pred C
Confidence 6
No 2
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.9e-71 Score=510.40 Aligned_cols=303 Identities=35% Similarity=0.628 Sum_probs=162.6
Q ss_pred cccCCCCCCC--CeeeeCCCCceecCCCCccccCcccccCCCcccccCCC-CCCCCCCCCCCCCCcccCCCCceeeccCC
Q psy6534 5 KVCCYEHPDA--PLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEK-SGVDPSRVGGPENPLLNGSDLSTMIGPGR 81 (309)
Q Consensus 5 ~~~Cp~C~~~--~~v~D~~~G~~vC~~CG~V~~e~~id~~~ewr~f~~~~-~~~~~sr~g~~~~~~~~~~~l~t~i~~~~ 81 (309)
.+.||+||+. ++++|+++|++||++||+|++|++||+|||||+|++++ ++.|++|+|+|.|+++||.+++|.|+++.
T Consensus 21 ~~~Cp~Cg~~~~~iv~D~~~G~~vC~~CG~Vl~e~~id~~~EwR~F~~~~~~~~~~srvG~~~~~~~~~~~l~T~I~~~~ 100 (345)
T 3k7a_M 21 VLTCPECKVYPPKIVERFSEGDVVCALCGLVLSDKLVDTRSEWRTFSNDDHNGDDPSRVGEASNPLLDGNNLSTRIGKGE 100 (345)
T ss_dssp CCCCSTTCCSCCCCCCCSSSCSCCCSSSCCCCCCCCCCTTCCCCCC--------------CCCCCSSSCCCCCCCCCCTT
T ss_pred CCcCcCCCCCCCceEEECCCCCEecCCCCeEcccccccCCccccccccccccCCCCCccCCCCCccccCCCCceeeccCC
Confidence 5689999986 69999999999999999999999999999999999753 46789999999999999999999998752
Q ss_pred -CCCCCCCCCcccccccccCChhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHH
Q psy6534 82 -GDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIA 160 (309)
Q Consensus 82 -~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~I~~i~~~L~Lp~~v~e~A~~~~~~~~~~~~~~gr~~~~vaaAcly~a 160 (309)
.++++ .....+||++..++++|++|.+|+..|+.+|+.|+||+.++++|..||+++++.++++|++.+.++|||||+|
T Consensus 101 ~~~~~~-~r~l~~~~~~~~~~~~er~l~~a~~~I~~~~~~L~Lp~~v~d~A~~lyk~~~~~~~~kgr~~~~vaaAclyiA 179 (345)
T 3k7a_M 101 TTDMRF-TKELNKAQGKNVMDKKDNEVQAAFAKITMLCDAAELPKIVKDCAKEAYKLCHDEKTLKGKSMESIMAASILIG 179 (345)
T ss_dssp SCCHHH-HHHHHHHHHHHTTSSCCTTHHHHHHHHHHHHHHTTCCHHHHTHHHHHHHHHSSSCSSCCCCSHHHHTTTTTTT
T ss_pred CCCchh-hhhhhhhcccccCCHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcccCCcHHHHHHHHHHHH
Confidence 11111 0113467777667899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCccHHHHHHHhcccHHHHHHHHHHHHHHhc------------ccCCCCChHHHHHHHHhhCCCCHHHHHHHHHH
Q psy6534 161 CRQEGVPRTFKEICAVSKISKKEIGRCFKLILKALE------------TSVDLITTGDFMSRFCSNLSLPNMVQKAATHI 228 (309)
Q Consensus 161 cR~~~~~~tl~eia~~~~~~~~~i~~~~~~l~~~l~------------~~~~~~~p~~~i~~~~~~L~l~~~~~~~a~~i 228 (309)
||++++|++++||+.++++++++|+++|+.|.+.|+ +.+++++|+.||.+||+.|++++++.+.|++|
T Consensus 180 cR~e~~prtl~ei~~~~~v~~keIgr~~~~l~~~L~~~~~~~~~~~~~~~~~~~~p~~~i~Rf~~~L~l~~~v~~~A~~i 259 (345)
T 3k7a_M 180 CRRAEVARTFKEIQSLIHVKTKEFGKTLNIMKNILRGKSEDGFLKIDTDNMSGAQNLTYIPRFCSHLGLPMQVTTSAEYT 259 (345)
T ss_dssp SBTTBSSCCHHHHHHSSSCCSHHHHHHHHHHHHHHTCC------------------------------------------
T ss_pred HHHcCCCccHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccccccccccccCCCCHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 999999999999999999999999999999999998 77888999999999999999999999999999
Q ss_pred HHHhhhcCccCCCChHHHHHHHHHHHHHhCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHhhcccCCCCcC-CC-CCCCCC
Q psy6534 229 ARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKLFPQDFV-FH-TPIHEL 306 (309)
Q Consensus 229 ~~~~~~~~l~~Gr~P~~iaaAaiyla~~~~~~~~~~~~ia~~~~vs~~ti~~~~kei~~~~~~l~~~~~~-~~-~~~~~~ 306 (309)
++.+.+.|+..||+|.+|||||||+|+++++.++++++|++++||++.||+++||+|++.+.+|+|++|. +. .+++.|
T Consensus 260 ~~~~~~~~l~~Gr~P~~IAaAaIylAa~~~~~~~t~~eIa~~~~Vse~TIr~~ykel~~~~~~l~~~~~~~~~~~~~~~l 339 (345)
T 3k7a_M 260 AKKCKEIKEIAGKSPITIAVVSIYLNILLFQIPITAAKVGQTLQVTEGTIKSGYKILYEHRDKLVDPQLIANGVVSLDNL 339 (345)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHhchhcCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCCHHHhhcccCCHhhC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999986 43 789999
Q ss_pred CC
Q psy6534 307 PQ 308 (309)
Q Consensus 307 ~~ 308 (309)
|+
T Consensus 340 p~ 341 (345)
T 3k7a_M 340 PG 341 (345)
T ss_dssp --
T ss_pred CC
Confidence 96
No 3
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A*
Probab=100.00 E-value=2e-43 Score=303.52 Aligned_cols=206 Identities=83% Similarity=1.238 Sum_probs=201.5
Q ss_pred HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHhcCCCccHHHHHHHhcccHHH
Q psy6534 104 DRALLNAIREINSMADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKE 183 (309)
Q Consensus 104 ~~~l~~~~~~I~~i~~~L~Lp~~v~e~A~~~~~~~~~~~~~~gr~~~~vaaAcly~acR~~~~~~tl~eia~~~~~~~~~ 183 (309)
||+|.+|++.|+++|.+|+||+.++++|..+|+++++.+.++|++.+.++|||+|+|||.++.|++++||+..++++.++
T Consensus 2 er~l~~a~~~I~~~~~~L~L~~~v~~~A~~~~~r~~~~~~~~~~~~~~v~aaclylAcK~ee~p~~l~di~~~~~~~~~~ 81 (207)
T 1c9b_A 2 DRAMMNAFKEITTMADRINLPRNIVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFKEICAVSRISKKE 81 (207)
T ss_dssp GGGHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTCSTTSCHHHHHHHHHHHHHHHTTCCCCHHHHHHTSSSCHHH
T ss_pred chHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcCCCCHHHHHHHHHHHHHHhcCCCCCHHHHHHHHCCCHHH
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcccCCCCChHHHHHHHHhhCCCCHHHHHHHHHHHHHhhhcCccCCCChHHHHHHHHHHHHHhCCCCCC
Q psy6534 184 IGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRS 263 (309)
Q Consensus 184 i~~~~~~l~~~l~~~~~~~~p~~~i~~~~~~L~l~~~~~~~a~~i~~~~~~~~l~~Gr~P~~iaaAaiyla~~~~~~~~~ 263 (309)
|+++++.|.+.|+++++..+|+.|+.+|++.|++++++.+.|+.+++.+.+.++..|++|.+|||||||+|++++|.+++
T Consensus 82 i~~~~~~ll~~L~~~l~~~~p~~~l~r~~~~l~l~~~~~~~A~~i~~~~~~~~l~~g~~P~~IAaAaiylA~~~~~~~~~ 161 (207)
T 1c9b_A 82 IGRCFKLILKALETSVDLITTGDFMSRFCSNLCLPKQVQMAATHIARKAVELDLVPGRSPISVAAAAIYMASQASAEKRT 161 (207)
T ss_dssp HHHHHHHHHHHTTCCCCCCCTHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTCSTTCCHHHHHHHHHHHHHHTSSSCCC
T ss_pred HHHHHHHHHHHHCCCcCcCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCccCCCChHHHHHHHHHHHHHHHCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHhhcccCCCCcCCCCCCCCCCCC
Q psy6534 264 QKEIGDIAGVAEVTIRQSYKLMYPHASKLFPQDFVFHTPIHELPQL 309 (309)
Q Consensus 264 ~~~ia~~~~vs~~ti~~~~kei~~~~~~l~~~~~~~~~~~~~~~~~ 309 (309)
+++|++.+||++.||+++|++|.+....++|+||.+..++++||+.
T Consensus 162 ~~~i~~~~~v~~~tI~~~~~~l~~~l~~~~p~~~~~~~~~~~l~~~ 207 (207)
T 1c9b_A 162 QKEIGDIAGVADVTIRQSYRLIYPRAPDLFPTDFKFDTPVDKLPQL 207 (207)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHGGGHHHHSCSSCCCSSCSTTSCCC
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHhChHHHcccCCHhhCCCC
Confidence 9999999999999999999999999999999999999999999973
No 4
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B*
Probab=100.00 E-value=1.9e-42 Score=295.88 Aligned_cols=190 Identities=31% Similarity=0.613 Sum_probs=182.1
Q ss_pred ChhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHhcCCCccHHHHHHHhccc
Q psy6534 101 NSSDRALLNAIREINSMADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKIS 180 (309)
Q Consensus 101 ~~~~~~l~~~~~~I~~i~~~L~Lp~~v~e~A~~~~~~~~~~~~~~gr~~~~vaaAcly~acR~~~~~~tl~eia~~~~~~ 180 (309)
+++|++|.+|++.|.++|.+|+||+.+.++|..+|+++++.++++|++.+.++|||+|+|||+++.|++++||+++++++
T Consensus 3 ~~~er~l~~a~~~I~~~~~~L~L~~~v~~~A~~l~~~~~~~~~~~gr~~~~vaaAclylAcr~~~~p~~l~di~~~~~v~ 82 (200)
T 1ais_B 3 DAAERNLAFALSELDRITAQLKLPRHVEEEAARLYREAVRKGLIRGRSIESVMAACVYAACRLLKVPRTLDEIADIARVD 82 (200)
T ss_dssp -----CHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTTTTTTCCHHHHHHHHHHHHHHHHTCCCCHHHHHHHTTSC
T ss_pred ChHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHHHcCCCCCHHHHHHHHCCC
Confidence 47789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcccCCC--CChHHHHHHHHhhCCCCHHHHHHHHHHHHHhhhcCccCCCChHHHHHHHHHHHHHhC
Q psy6534 181 KKEIGRCFKLILKALETSVDL--ITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQAS 258 (309)
Q Consensus 181 ~~~i~~~~~~l~~~l~~~~~~--~~p~~~i~~~~~~L~l~~~~~~~a~~i~~~~~~~~l~~Gr~P~~iaaAaiyla~~~~ 258 (309)
+++|+++|+.|.+.|++++++ .+|+.||.+|++.|++++++.+.|++|++.+.+.++..||+|.+|||||||+||+++
T Consensus 83 ~~~i~~~~~~l~~~L~~~~~~~~~~p~~~i~r~~~~L~l~~~v~~~A~~i~~~~~~~~~~~gr~P~~iAaAaly~A~~~~ 162 (200)
T 1ais_B 83 KKEIGRSYRFIARNLNLTPKKLFVKPTDYVNKFADELGLSEKVRRRAIEILDEAYKRGLTSGKSPAGLVAAALYIASLLE 162 (200)
T ss_dssp HHHHHHHHHHHHHHTTCCTTTTCCCGGGGHHHHHHHHTCCHHHHHHHHHHHHHHHHTTCCTTSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhcccCCcCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHh
Confidence 999999999999999999998 999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHHHHhhc
Q psy6534 259 SDKRSQKEIGDIAGVAEVTIRQSYKLMYPHAS 290 (309)
Q Consensus 259 ~~~~~~~~ia~~~~vs~~ti~~~~kei~~~~~ 290 (309)
|.++|++||++.+||++.||+++|++|.+..+
T Consensus 163 ~~~~t~~ei~~~~~vs~~ti~~~~~~l~~~l~ 194 (200)
T 1ais_B 163 GEKRTQREVAEVARVTEVTVRNRYKELVEKLK 194 (200)
T ss_dssp TCCCCHHHHHHHHTCCHHHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999865
No 5
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe}
Probab=99.94 E-value=9e-26 Score=197.13 Aligned_cols=181 Identities=16% Similarity=0.225 Sum_probs=166.3
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCC-CchhHHHHHHHHHHHHhcCCCccHHHHHHHh--------
Q psy6534 107 LLNAIREINSMADRINLTKTIVDRANNLFKQVHDGKNLKG-RSNDAIASACLYIACRQEGVPRTFKEICAVS-------- 177 (309)
Q Consensus 107 l~~~~~~I~~i~~~L~Lp~~v~e~A~~~~~~~~~~~~~~g-r~~~~vaaAcly~acR~~~~~~tl~eia~~~-------- 177 (309)
...+.++|.+++.+|+||+.+..+|..||++++..+.+++ ++...+++||+|+|||.++.|++++||+.++
T Consensus 28 R~~~~~~i~~v~~~l~L~~~t~~~A~~~~~Rf~~~~~~~~~~~~~lv~~acL~lA~K~Ee~~~~l~d~~~~~~~~~~~~~ 107 (235)
T 1zp2_A 28 TIYQWKVVQTFGDRLRLRQRVLATAIVLLRRYMLKKNEEKGFSLEALVATCIYLSCKVEECPVHIRTICNEANDLWSLKV 107 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCSCCCCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHTTCCCSS
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcccccccCHHHHHHHHHHHHhccccCcccHHHHHHHHHHHccchh
Confidence 5667899999999999999999999999999999988888 9999999999999999999999999999876
Q ss_pred cccHHHHHHHHHHHHHHhcccCCCCChHHHHHHHHhhCCCCHHHHHHHHHHHHHhhhcCccCCCChHHHHHHHHHHHHHh
Q psy6534 178 KISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQA 257 (309)
Q Consensus 178 ~~~~~~i~~~~~~l~~~l~~~~~~~~p~~~i~~~~~~L~l~~~~~~~a~~i~~~~~~~~l~~Gr~P~~iaaAaiyla~~~ 257 (309)
..+.++|.++++.|.+.|++++.+.+|..|+.+|++.+++++++.+.|+.+++.+...++..|+.|..|||||||+|+++
T Consensus 108 ~~~~~~I~~~E~~iL~~L~f~l~~~~P~~~l~~~~~~~~~~~~~~~~A~~~l~~s~~~~~~l~~~Ps~IAaAai~lA~~~ 187 (235)
T 1zp2_A 108 KLSRSNISEIEFEIISVLDAFLIVHHPYTSLEQAFHDGIINQKQLEFAWSIVNDSYASSLCLMAHPHQLAYAALLISCCN 187 (235)
T ss_dssp CCCHHHHHHHHHHHHHHTTTCCCCCCTHHHHHHHHHTTSSCHHHHHHHHHHHHHHTTTTGGGTSCHHHHHHHHHHHHHTS
T ss_pred hccHHHHHHHHHHHHHHCCCcEEecChHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCchhccCHHHHHHHHHHHHHHh
Confidence 47899999999999999999999999999999999999999999999999999999889999999999999999999999
Q ss_pred CCCCCCHHHHHHHhCCCHHHHHHHHHHHHHh
Q psy6534 258 SSDKRSQKEIGDIAGVAEVTIRQSYKLMYPH 288 (309)
Q Consensus 258 ~~~~~~~~~ia~~~~vs~~ti~~~~kei~~~ 288 (309)
.+.+.+ .+.+...|+++.+|+.++++|.+.
T Consensus 188 ~~~~~~-~~~~~~~~~~~~~i~~~~~~i~~l 217 (235)
T 1zp2_A 188 DENTIP-KLLDLIKSTDAFKVILCVQRIISI 217 (235)
T ss_dssp CTTHHH-HHHHHCCHHHHHHHHHHHHHHHHH
T ss_pred cCCCCC-CCcchhhcCCHHHHHHHHHHHHHH
Confidence 887543 233333499999999999999864
No 6
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=99.91 E-value=5.5e-23 Score=181.90 Aligned_cols=181 Identities=14% Similarity=0.185 Sum_probs=162.6
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHhcCCCccHHHHHHHhcc--------
Q psy6534 108 LNAIREINSMADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKI-------- 179 (309)
Q Consensus 108 ~~~~~~I~~i~~~L~Lp~~v~e~A~~~~~~~~~~~~~~gr~~~~vaaAcly~acR~~~~~~tl~eia~~~~~-------- 179 (309)
..+.++|.+++..|+||+.+...|..||++++..+.+++++.+.+++||+|+|||.++.|++++||+..+..
T Consensus 42 ~~~~~~i~~v~~~l~l~~~t~~~A~~~~dRf~~~~~~~~~~~qlv~~acL~lA~K~eE~~~~l~d~~~~~~~~~~~~~~~ 121 (258)
T 2i53_A 42 REGARFIFDVGTRLGLHYDTLATGIIYFHRFYMFHSFKQFPRYVTGACCLFLAGKVEETPKKCKDIIKTARSLLNDVQFG 121 (258)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTSCTTTSCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHSCHHHHG
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCChhhcCHHHHHHHHHHHHHccccccccHHHHHHHHHHHhchhhhh
Confidence 457899999999999999999999999999999999999999999999999999999999999999976431
Q ss_pred -----cHHHHHHHHHHHHHHhcccCCCCChHHHHHHHHhhCCCCH----HHHHHHHHHHHHhhhcCccCCCChHHHHHHH
Q psy6534 180 -----SKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPN----MVQKAATHIARKAVELDIVPGRSPISVAAAA 250 (309)
Q Consensus 180 -----~~~~i~~~~~~l~~~l~~~~~~~~p~~~i~~~~~~L~l~~----~~~~~a~~i~~~~~~~~l~~Gr~P~~iaaAa 250 (309)
..++|.++.+.|.+.|++++...+|..|+.+|++.|+.+. ++...|+.+++.+.......+.+|+.||+||
T Consensus 122 ~~~~~~~~~i~~~E~~iL~~L~f~l~~~~P~~fl~~~~~~l~~~~~~~~~~~~~A~~l~~~s~~~~~~l~~~Ps~IAaAa 201 (258)
T 2i53_A 122 QFGDDPKEEVMVLERILLQTIKFDLQVEHPYQFLLKYAKQLKGDKNKIQKLVQMAWTFVNDSLCTTLSLQWEPEIIAVAV 201 (258)
T ss_dssp GGCSCHHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHTBCSCHHHHHHHHHHHHHHHHHHTTTTGGGTSCHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHHHHHCCCceeccChHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHcCCchhccChHHHHHHH
Confidence 3679999999999999999999999999999999999986 5788999999999888888999999999999
Q ss_pred HHHHHHhCCCCCCHHHH-------HHH--hCCCHHHHHHHHHHHHHh
Q psy6534 251 IYMASQASSDKRSQKEI-------GDI--AGVAEVTIRQSYKLMYPH 288 (309)
Q Consensus 251 iyla~~~~~~~~~~~~i-------a~~--~~vs~~ti~~~~kei~~~ 288 (309)
||+|++++|.++++.+. ... .|+++.+|+.++++|.+.
T Consensus 202 i~lA~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~l~~~~~~il~l 248 (258)
T 2i53_A 202 MYLAGRLCKFEIQEWTSKPMYRRWWEQFVQDVPVDVLEDICHQILDL 248 (258)
T ss_dssp HHHHHHHHTCCGGGGBSSCCSSCGGGGTSSSCCHHHHHHHHHHHHTT
T ss_pred HHHHHHHhCCCCCccccCCCcccHHHHhccCCCHHHHHHHHHHHHHH
Confidence 99999999987654322 133 499999999999999865
No 7
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B*
Probab=99.91 E-value=1.2e-22 Score=179.63 Aligned_cols=182 Identities=13% Similarity=0.144 Sum_probs=162.7
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHhcCCCccHHHHHHHhcc--------
Q psy6534 108 LNAIREINSMADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKI-------- 179 (309)
Q Consensus 108 ~~~~~~I~~i~~~L~Lp~~v~e~A~~~~~~~~~~~~~~gr~~~~vaaAcly~acR~~~~~~tl~eia~~~~~-------- 179 (309)
..+.++|.+++.+|+||+.+..+|..||++++..+.+++.+.+.+++||+|+|||.++.|++++||+.++..
T Consensus 32 ~~~~~~i~~v~~~l~l~~~t~~~A~~~~dRf~~~~~~~~~~~qlv~~acL~lA~K~EE~p~~l~d~~~~~~~~~~~~~~~ 111 (257)
T 2ivx_A 32 QQAANLIQEMGQRLNVSQLTINTAIVYMHRFYMHHSFTKFNKNIISSTALFLAAKVEEQARKLEHVIKVAHACLHPLEPL 111 (257)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTSCTTTSCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHCTTSCC
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhhCChhhhCHHHHHHHHHHHHhccccCCcCHHHHHHHHHHHhccCCCC
Confidence 457899999999999999999999999999999999999999999999999999999999999999876531
Q ss_pred ----------cHHHHHHHHHHHHHHhcccCCCCChHHHHHHHHhhCCCCHHHHHHHHHHHHHhh-hcCccCCCChHHHHH
Q psy6534 180 ----------SKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAV-ELDIVPGRSPISVAA 248 (309)
Q Consensus 180 ----------~~~~i~~~~~~l~~~l~~~~~~~~p~~~i~~~~~~L~l~~~~~~~a~~i~~~~~-~~~l~~Gr~P~~iaa 248 (309)
..++|.++.+.|.+.|++++...+|..|+.+|++.++.++++...|+.+++.+. ...+..+..|+.||+
T Consensus 112 ~~~~~~~y~~~~~~I~~~E~~iL~~L~f~l~~~~P~~fl~~~~~~l~~~~~~~~~A~~~~~~sl~~~~~~l~~~Ps~IAa 191 (257)
T 2ivx_A 112 LDTKCDAYLQQTRELVILETIMLQTLGFEITIEHPHTDVVKCTQLVRASKDLAQTSYFMATNSLHLTTFCLQYKPTVIAC 191 (257)
T ss_dssp CCTTSHHHHHHHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCGGGTSCHHHHHH
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHHcccceEeeCcHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhcccHHHcCCHHHHHH
Confidence 278899999999999999999999999999999999999999999999998876 466778999999999
Q ss_pred HHHHHHHHhCCCCCCHH----HHHHH--hCCCHHHHHHHHHHHHHhh
Q psy6534 249 AAIYMASQASSDKRSQK----EIGDI--AGVAEVTIRQSYKLMYPHA 289 (309)
Q Consensus 249 Aaiyla~~~~~~~~~~~----~ia~~--~~vs~~ti~~~~kei~~~~ 289 (309)
||||+|++++|.++++. ...+. .++++.+|+..+++|.+.-
T Consensus 192 Aai~lA~~~~~~~~p~~~~~~~W~~~~~~~~~~~~l~~~~~~i~~~~ 238 (257)
T 2ivx_A 192 VCIHLACKWSNWEIPVSTDGKHWWEYVDPTVTLELLDELTHEFLQIL 238 (257)
T ss_dssp HHHHHHHHHHTCCCCCCTTCCCGGGGTCSSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCCCCCchHHHHhCCCCCHHHHHHHHHHHHHHH
Confidence 99999999998876542 24443 3799999999999997653
No 8
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}
Probab=99.90 E-value=2.7e-22 Score=179.81 Aligned_cols=178 Identities=14% Similarity=0.204 Sum_probs=163.9
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHhcCCCc-cHHHHHHHhc--------
Q psy6534 108 LNAIREINSMADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPR-TFKEICAVSK-------- 178 (309)
Q Consensus 108 ~~~~~~I~~i~~~L~Lp~~v~e~A~~~~~~~~~~~~~~gr~~~~vaaAcly~acR~~~~~~-tl~eia~~~~-------- 178 (309)
..+.++|.+++.+|+||+.+..+|..||++++..+.+++.+...+++||+|+|||.++.|+ +++||..++.
T Consensus 44 ~~~~~~I~~v~~~l~L~~~t~~tA~~~~~RF~~~~s~~~~~~~lva~acLfLA~K~EE~~~~~~~di~~~~~~~~k~~~~ 123 (285)
T 3rgf_B 44 IFFTNVIQALGEHLKLRQQVIATATVYFKRFYARYSLKSIDPVLMAPTCVFLASKVEEFGVVSNTRLIAAATSVLKTRFS 123 (285)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhCCchhcCHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHccccc
Confidence 4578999999999999999999999999999999999999999999999999999999997 7889886542
Q ss_pred --------ccHHHHHHHHHHHHHHhcccCCCCChHHHHHHHHhhCCCCHHHHHHHHHHHHHhhhcCccCCCChHHHHHHH
Q psy6534 179 --------ISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAA 250 (309)
Q Consensus 179 --------~~~~~i~~~~~~l~~~l~~~~~~~~p~~~i~~~~~~L~l~~~~~~~a~~i~~~~~~~~l~~Gr~P~~iaaAa 250 (309)
...++|.++.+.|.+.|++++.+.+|..|+.+|+..|+++..+...|+.+++.+....+..+..|..||+||
T Consensus 124 ~~~~~~~~~~~~~Il~~E~~iL~~L~f~l~v~~P~~fL~~~~~~l~~~~~~~~~A~~~l~~sl~t~~~l~~~Ps~IAaAa 203 (285)
T 3rgf_B 124 YAFPKEFPYRMNHILECEFYLLELMDCCLIVYHPYRPLLQYVQDMGQEDMLLPLAWRIVNDTYRTDLCLLYPPFMIALAC 203 (285)
T ss_dssp TTCCSCCCCCHHHHHHHHHHHHHHTTTCCCCCCSHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSHHHHSCHHHHHHHH
T ss_pred ccCchhhHHHHHHHHHHHHHHHHHcCCCeEeCChHHHHHHHHHHhCCCHHHHHHHHHHHHHHHccChhhccCHHHHHHHH
Confidence 467899999999999999999999999999999999999999999999999999888888899999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHhCCCHHHHHHHHHHHHH
Q psy6534 251 IYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYP 287 (309)
Q Consensus 251 iyla~~~~~~~~~~~~ia~~~~vs~~ti~~~~kei~~ 287 (309)
||+|+++.+.+. ....+.+|++...|...+++|.+
T Consensus 204 iylA~~~~~~~~--~~W~~~~~~~~~~l~~~~~~il~ 238 (285)
T 3rgf_B 204 LHVACVVQQKDA--RQWFAELSVDMEKILEIIRVILK 238 (285)
T ss_dssp HHHHHHHTTCCC--HHHHHTSCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCh--hhHHHHHCCCHHHHHHHHHHHHH
Confidence 999999998765 46777899999999999999864
No 9
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B*
Probab=99.90 E-value=2.1e-22 Score=179.09 Aligned_cols=182 Identities=12% Similarity=0.104 Sum_probs=170.2
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHhcCC-CccHHHHHHHhc--ccHHHH
Q psy6534 108 LNAIREINSMADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGV-PRTFKEICAVSK--ISKKEI 184 (309)
Q Consensus 108 ~~~~~~I~~i~~~L~Lp~~v~e~A~~~~~~~~~~~~~~gr~~~~vaaAcly~acR~~~~-~~tl~eia~~~~--~~~~~i 184 (309)
....++|.+++..++|++.+...|..+++++.....+++++.+.+++||+|+|||.++. |++++|++..++ .+.++|
T Consensus 39 ~~lv~wl~~v~~~~~l~~~tl~lAv~~lDRfl~~~~v~~~~lqlv~~acL~iA~K~eE~~~p~~~d~~~~~~~~~~~~eI 118 (269)
T 2b9r_A 39 AILIDWLVQVQMKFRLLQETMYMTVSIIDRFMQNNSVPKKMLQLVGVTAMFIASKYEEMYPPEIGDFAFVTDNTYTKHQI 118 (269)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTTSCCCGGGHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTCSSSCHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCcHHHhhHHHHHHHHHHHhcccccCccHHHHHHHhcCCCCHHHH
Confidence 34578899999999999999999999999999998889999999999999999999987 899999999884 799999
Q ss_pred HHHHHHHHHHhcccCCCCChHHHHHHHHhhCCCCHHHHHHHHHHHHHhhhcCccCCCChHHHHHHHHHHHHHhCCCCCCH
Q psy6534 185 GRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQ 264 (309)
Q Consensus 185 ~~~~~~l~~~l~~~~~~~~p~~~i~~~~~~L~l~~~~~~~a~~i~~~~~~~~l~~Gr~P~~iaaAaiyla~~~~~~~~~~ 264 (309)
.++.+.|.+.|++++...+|..|+.++++.++++.++...|..+++.+.......+.+|+.|||||||+|.++.+.+.+.
T Consensus 119 ~~mE~~IL~~L~f~l~~~tp~~fl~~~~~~~~~~~~~~~~a~~l~e~sl~~~~~~~~~Ps~iAaAai~lA~~~l~~~~w~ 198 (269)
T 2b9r_A 119 RQMEMKILRALNFGLGRPLPLHFLRRASKIGEVDVEQHTLAKYLMELTMLDYDMVHFPPSQIAAGAFSLALKILDNGEWT 198 (269)
T ss_dssp HHHHHHHHHHTTSCCCCCCHHHHHHHHHHSSCCCHHHHHHHHHHHHHGGGCGGGSSSCTTHHHHHHHHHHHHHHTCCCSC
T ss_pred HHHHHHHHHHcCCccCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhhhhcCCHHHHHHHHHHHHHHHhCCCCCC
Confidence 99999999999999999999999999999999999999999999999887777789999999999999999999988889
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHhh
Q psy6534 265 KEIGDIAGVAEVTIRQSYKLMYPHA 289 (309)
Q Consensus 265 ~~ia~~~~vs~~ti~~~~kei~~~~ 289 (309)
+++...+|+++.+|+.++++|.+..
T Consensus 199 ~~l~~~tg~~~~~l~~~~~~l~~~~ 223 (269)
T 2b9r_A 199 PTLQHYLSYTEESLLPVMQHLAKNV 223 (269)
T ss_dssp TTHHHHSCCCSSTTTTHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999998654
No 10
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ...
Probab=99.89 E-value=1.1e-21 Score=173.82 Aligned_cols=181 Identities=14% Similarity=0.165 Sum_probs=165.8
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHhcCC-CccHHHHHHHhc--ccHHHH
Q psy6534 108 LNAIREINSMADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGV-PRTFKEICAVSK--ISKKEI 184 (309)
Q Consensus 108 ~~~~~~I~~i~~~L~Lp~~v~e~A~~~~~~~~~~~~~~gr~~~~vaaAcly~acR~~~~-~~tl~eia~~~~--~~~~~i 184 (309)
....++|.+++..++|+..+.-.|..+++++.....+...+.+.+++||+|+|||.++. |++++|++..++ .+.++|
T Consensus 40 ~~lvdwl~~v~~~~~l~~~tl~lAv~~lDRfls~~~v~~~~lqlv~~acl~iA~K~ee~~~~~~~d~~~i~~~~~~~~~i 119 (260)
T 2cch_B 40 AILVDWLVEVGEEYKLQNETLHLAVNYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQV 119 (260)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTTSSSCHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccCCCCHHHHhHHHHHHHHHHHHhcccCCCCHHHHHHHHcCCcCHHHH
Confidence 34678999999999999999999999999999887788788999999999999999998 999999998874 789999
Q ss_pred HHHHHHHHHHhcccCCCCChHHHHHHHHhhCCCCH-HHHHHHHHHHHHhhhcC-ccCCCChHHHHHHHHHHHHHhCCCCC
Q psy6534 185 GRCFKLILKALETSVDLITTGDFMSRFCSNLSLPN-MVQKAATHIARKAVELD-IVPGRSPISVAAAAIYMASQASSDKR 262 (309)
Q Consensus 185 ~~~~~~l~~~l~~~~~~~~p~~~i~~~~~~L~l~~-~~~~~a~~i~~~~~~~~-l~~Gr~P~~iaaAaiyla~~~~~~~~ 262 (309)
.++.+.|.+.|++++...+|..|+.+|+..+++++ .+...|+.+++.+.... +..+.+|+.|||||||+|.+..+.+.
T Consensus 120 ~~mE~~iL~~L~~~l~~~tp~~fl~~~~~~l~~~~~~~~~~a~~l~e~sl~~~~~~~~~~Ps~iAaAai~lA~~~~~~~~ 199 (260)
T 2cch_B 120 LRMEHLVLKVLTFDLAAPTVNQFLTQYFLHQQPANCKVESLAMFLGELSLIDADPYLKYLPSVIAGAAFHLALYTVTGQS 199 (260)
T ss_dssp HHHHHHHHHHTTTCCCCCCHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHCHHHHTTSCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHcCCccCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhHHHHhCCCHHHHHHHHHHHHHHHhCCCc
Confidence 99999999999999999999999999999999876 78889999998865333 36799999999999999999988888
Q ss_pred CHHHHHHHhCCCHHHHHHHHHHHHHh
Q psy6534 263 SQKEIGDIAGVAEVTIRQSYKLMYPH 288 (309)
Q Consensus 263 ~~~~ia~~~~vs~~ti~~~~kei~~~ 288 (309)
+.++++..+|+++.+|+.++++|.+.
T Consensus 200 w~~~l~~~~g~~~~~i~~~~~~l~~~ 225 (260)
T 2cch_B 200 WPESLIRKTGYTLESLKPCLMDLHQT 225 (260)
T ss_dssp SCHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred chHHHHHHhCcCHHHHHHHHHHHHHH
Confidence 99999999999999999999999864
No 11
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A
Probab=99.88 E-value=6.5e-21 Score=169.72 Aligned_cols=186 Identities=15% Similarity=0.180 Sum_probs=163.1
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHhcCC-CccHHHHHHHhc--ccHHHH
Q psy6534 108 LNAIREINSMADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGV-PRTFKEICAVSK--ISKKEI 184 (309)
Q Consensus 108 ~~~~~~I~~i~~~L~Lp~~v~e~A~~~~~~~~~~~~~~gr~~~~vaaAcly~acR~~~~-~~tl~eia~~~~--~~~~~i 184 (309)
....++|.+++..+++++.+.-.|..+++++.....+..++.+.+++||+|+|||.++. |++++|++..++ .+.++|
T Consensus 58 ~~lv~wl~~v~~~~~l~~~tl~lAv~~lDRfls~~~v~~~~lqlv~~acL~iAsK~EE~~p~~~~~~~~~~~~~~~~~eI 137 (271)
T 2w96_A 58 KIVATWMLEVCEEQKCEEEVFPLAMNYLDRFLSLEPVKKSRLQLLGATCMFVASKMKETIPLTAEKLCIYTDNSIRPEEL 137 (271)
T ss_dssp HHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHTTSCCCTTTHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTTTSSCHHHH
T ss_pred HHHHHHHHHHHHHHCCchhHHHHHHHHHHHhCCcCCcCHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHhcCCCCHHHH
Confidence 44578899999999999999999999999999988888889999999999999999998 999999998864 789999
Q ss_pred HHHHHHHHHHhcccCCCCChHHHHHHHHhhCCCCHHH----HHHHHHHHHHhhhcCccCCCChHHHHHHHHHHHHHhCCC
Q psy6534 185 GRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMV----QKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSD 260 (309)
Q Consensus 185 ~~~~~~l~~~l~~~~~~~~p~~~i~~~~~~L~l~~~~----~~~a~~i~~~~~~~~l~~Gr~P~~iaaAaiyla~~~~~~ 260 (309)
.++.+.|.+.|++++...+|..|+.+|+..++++.+. .+.|..+++.+.......+.+|+.|||||||+|....+.
T Consensus 138 ~~mE~~IL~~L~~~l~~~tp~~fl~~~~~~l~~~~~~~~~~~~~a~~~l~~~~~d~~~~~~~PS~iAaAai~lA~~~l~~ 217 (271)
T 2w96_A 138 LQMELLLVNKLKWNLAAMTPHDFIEHFLSKMPEAEENKQIIRKHAQTFVALCATDVKFISNPPSMVAAGSVVAAVQGLNL 217 (271)
T ss_dssp HHHHHHHHHHTTTCCCCCCHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHTSTHHHHSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCccCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhCc
Confidence 9999999999999999999999999999999998764 346777777665444456899999999999999987643
Q ss_pred ---------CCCHHHHHHHhCCCHHHHHHHHHHHHHhhcccC
Q psy6534 261 ---------KRSQKEIGDIAGVAEVTIRQSYKLMYPHASKLF 293 (309)
Q Consensus 261 ---------~~~~~~ia~~~~vs~~ti~~~~kei~~~~~~l~ 293 (309)
..++++++..+|+++.+|+.++++|.+....-.
T Consensus 218 ~~~~~~~w~~~~~~~l~~~~~v~~~~l~~c~~~i~~l~~~~~ 259 (271)
T 2w96_A 218 RSPNNFLSYYRLTRFLSRVIKCDPDCLRACQEQIEALLESSL 259 (271)
T ss_dssp HSTTSCGGGTTHHHHHHHHHTSCHHHHHHHHHHHHHHHTTTT
T ss_pred CCCCCCCcHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHH
Confidence 124788999999999999999999998765444
No 12
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=99.87 E-value=6.1e-22 Score=182.50 Aligned_cols=182 Identities=13% Similarity=0.152 Sum_probs=161.4
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHhcCCCccHHHHHHHhcc--------
Q psy6534 108 LNAIREINSMADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKI-------- 179 (309)
Q Consensus 108 ~~~~~~I~~i~~~L~Lp~~v~e~A~~~~~~~~~~~~~~gr~~~~vaaAcly~acR~~~~~~tl~eia~~~~~-------- 179 (309)
..+.++|.+++..|+||+.++.+|..||++++....+++.+.+.+++||||+|||.++.|++++||+.++..
T Consensus 39 ~~~v~wI~ev~~~l~L~~~t~~tAv~~~dRFl~~~sv~~~~~qlva~acLfLA~K~EE~p~~l~d~v~v~~~~~~~~~~~ 118 (358)
T 2pk2_A 39 QQAANLLQDMGQRLNVSQLTINTAIVYMHRFYMIQSFTRFPGNSVAPAALFLAAKVEEQPKKLEHVIKVAHTCLHPQESL 118 (358)
T ss_dssp HHHHHHHHHHHTTTTCCHHHHHHHHHHHHHHTTTSCTTTSCHHHHHHHHHHHHHHHTTCCCCHHHHHTTHHHHHCSSSCC
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHhcccccc
Confidence 557899999999999999999999999999999999999999999999999999999999999999865421
Q ss_pred ----------cHHHHHHHHHHHHHHhcccCCCCChHHHHHHHHhhCCCCHHHHHHHHHHHHHhh-hcCccCCCChHHHHH
Q psy6534 180 ----------SKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAV-ELDIVPGRSPISVAA 248 (309)
Q Consensus 180 ----------~~~~i~~~~~~l~~~l~~~~~~~~p~~~i~~~~~~L~l~~~~~~~a~~i~~~~~-~~~l~~Gr~P~~iaa 248 (309)
..++|.++.+.|.+.|++++.+.+|..|+.+|++.++.+.++...|+.+++.+. ...+..+..|..|||
T Consensus 119 ~~~~~~~y~~~~~~Il~~E~~IL~~L~f~L~v~~P~~fL~~~~~~l~~~~~l~~~A~~ll~~sl~~t~l~l~y~Ps~IAa 198 (358)
T 2pk2_A 119 PDTRSEAYLQQVQDLVILESIILQTLGFELTIDHPHTHVVKCTQLVRASKDLAQTSYFMATNSLHLTTFSLQYTPPVVAC 198 (358)
T ss_dssp CCTTSHHHHGGGTGGGTHHHHHHHHTTTCCCCCCTTHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTSCGGGTSCHHHHTT
T ss_pred ccccchhhhHHHHHHHHHHHHHHHHcCCceeCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhccCHHHHHH
Confidence 267789999999999999999999999999999999999999999999998876 456678999999999
Q ss_pred HHHHHHHHhCCCCCCHH----HHHHH--hCCCHHHHHHHHHHHHHhh
Q psy6534 249 AAIYMASQASSDKRSQK----EIGDI--AGVAEVTIRQSYKLMYPHA 289 (309)
Q Consensus 249 Aaiyla~~~~~~~~~~~----~ia~~--~~vs~~ti~~~~kei~~~~ 289 (309)
||||+|+++++.++++. .+.+. .++++.+|+..+++|.+.-
T Consensus 199 AAI~lA~~~l~~~~p~~~~~~~W~~~~~~~vt~~~l~~i~~~il~~y 245 (358)
T 2pk2_A 199 VCIHLACKWSNWEIPVSTDGKHWWEYVDATVTLELLDELTHEFLQIL 245 (358)
T ss_dssp TTTTTHHHHTTCCCCCCSSSCCTTTTSCSSCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCCCCCccccchHHHHhccCCHHHHHHHHHHHHHHH
Confidence 99999999998776542 24444 3789999999999998643
No 13
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1
Probab=99.85 E-value=6.1e-20 Score=162.22 Aligned_cols=184 Identities=17% Similarity=0.157 Sum_probs=163.4
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHhcCC-CccHHHHHHHhc--ccHHHH
Q psy6534 108 LNAIREINSMADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGV-PRTFKEICAVSK--ISKKEI 184 (309)
Q Consensus 108 ~~~~~~I~~i~~~L~Lp~~v~e~A~~~~~~~~~~~~~~gr~~~~vaaAcly~acR~~~~-~~tl~eia~~~~--~~~~~i 184 (309)
....++|.+++..++|+..+.-.|..|++++.....+++++.+.+++||+|+|||.++. |++++|++..++ .+.++|
T Consensus 52 ~~lvdwl~ev~~~~~l~~etl~lAv~~~DRfls~~~v~~~~lqLv~~acl~iA~K~eE~~~p~~~d~~~~~~~~~~~~~i 131 (257)
T 1g3n_C 52 KLLGTWMFSVCQEYNLEPNVVALALNLLDRLLLIKQVSKEHFQKTGSACLLVASKLRSLTPISTSSLCYAAADSFSRQEL 131 (257)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTTTCSCHHHH
T ss_pred HHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHccccCCCHHHHHHHHCCCCCHHHH
Confidence 34578999999999999999999999999999998888889999999999999998875 999999998864 789999
Q ss_pred HHHHHHHHHHhcccCCCCChHHHHHHHHhhCCCCHHH----HHHHHHHHHHhhhcCccCCCChHHHHHHHHHHHHHhCCC
Q psy6534 185 GRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMV----QKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSD 260 (309)
Q Consensus 185 ~~~~~~l~~~l~~~~~~~~p~~~i~~~~~~L~l~~~~----~~~a~~i~~~~~~~~l~~Gr~P~~iaaAaiyla~~~~~~ 260 (309)
.++.+.|.+.|++++...+|..|+.+|+..++++.+. ...|..+++.+.......+.+|+.|||||||+|.+..+.
T Consensus 132 ~~mE~~iL~~L~~~l~~~tp~~fl~~~~~~~~~~~~~~~~~~~~a~~~le~~l~d~~~~~~~PS~iAaAai~lA~~~l~~ 211 (257)
T 1g3n_C 132 IDQEKELLEKLAWRTEAVLATDVTSFLLLKLVGGSQHLDFWHHEVNTLITKALVDPLTGSLPASIISAAGCALLVPANVI 211 (257)
T ss_dssp HHHHHHHHHHTTTCCCCCCHHHHHHHHHHHHSCSSTTHHHHHHHHHHHHHHHHTSTTGGGSCHHHHHHHHHHHHCCGGGS
T ss_pred HHHHHHHHHHCCCcCCCCCHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHhCcchhCcCHHHHHHHHHHHHHHHhCC
Confidence 9999999999999999999999999999999987543 456888887776655667899999999999999998874
Q ss_pred ------CCCHHHHHHHhCCCHHHHHHHHHHHHHhhcc
Q psy6534 261 ------KRSQKEIGDIAGVAEVTIRQSYKLMYPHASK 291 (309)
Q Consensus 261 ------~~~~~~ia~~~~vs~~ti~~~~kei~~~~~~ 291 (309)
+.+.++++..+|+++.+|+.++++|.+...+
T Consensus 212 ~~~~~~~~w~~~l~~~t~~~~~~l~~c~~~i~~l~~~ 248 (257)
T 1g3n_C 212 PQDTHSGGVVPQLASILGCDVSVLQAAVEQILTSVSD 248 (257)
T ss_dssp CC-----CHHHHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred CcccchhhHHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 3568899999999999999999999887544
No 14
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A
Probab=99.84 E-value=3.2e-19 Score=157.29 Aligned_cols=183 Identities=18% Similarity=0.237 Sum_probs=161.5
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHhcC-CCccHHHHHHHhc--ccHHHH
Q psy6534 108 LNAIREINSMADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEG-VPRTFKEICAVSK--ISKKEI 184 (309)
Q Consensus 108 ~~~~~~I~~i~~~L~Lp~~v~e~A~~~~~~~~~~~~~~gr~~~~vaaAcly~acR~~~-~~~tl~eia~~~~--~~~~~i 184 (309)
....++|.+++..++|+..+.-.|..|++++.....+++++.+.+++||+|+|||.++ .|++++|++..++ .+.++|
T Consensus 53 ~~lvdwl~~v~~~~~l~~etl~lAv~~~DRfls~~~v~~~~lqLv~~acl~iA~K~eE~~~p~~~d~~~~~~~~~~~~~i 132 (254)
T 2f2c_A 53 TILLTWMHLLCESFELDKSVFPLSVSILDRYLCKKQGTKKTLQKIGAACVLIGSKIRTVKPMTVSKLTYLSCDCFTNLEL 132 (254)
T ss_dssp HHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHTTTSCCCTTTHHHHHHHHHHHHHHHHCSSCCCHHHHSTTC---CCHHHH
T ss_pred HHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHccCCcCHHHccHHHHHHHHHHHHhcccCCCCHHHHHHHhCCCCCHHHH
Confidence 3457889999999999999999999999999999888889999999999999999987 5999999987753 789999
Q ss_pred HHHHHHHHHHhcccCCCCChHHHHHHHHhhCCCCHHH----HHHHHHHHHHhhhcCccCCCChHHHHHHHHHHHHHhCC-
Q psy6534 185 GRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMV----QKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASS- 259 (309)
Q Consensus 185 ~~~~~~l~~~l~~~~~~~~p~~~i~~~~~~L~l~~~~----~~~a~~i~~~~~~~~l~~Gr~P~~iaaAaiyla~~~~~- 259 (309)
.++.+.|.+.|++++...+|..|+.+|+..++++.+. ...|..+++.+.......+.+|+.|||||||+|.+..+
T Consensus 133 ~~mE~~IL~~L~~~l~~~tp~~fl~~~~~~~~~~~~~~~~~~~~a~~ll~~~l~d~~~~~~~PS~iAaAai~la~~~~~~ 212 (254)
T 2f2c_A 133 INQEKDILEALKWDTEAVLATDFLIPLCNALKIPEDLWPQLYEAASTTICKALIQPNIALLSPGLICAGGLLTTIETDNT 212 (254)
T ss_dssp HHHHHHHHHHTTTCCCCCCGGGSHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSGGGTTSCHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHCCCcCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHcCcchhccCHHHHHHHHHHHHHHhcCC
Confidence 9999999999999999999999999999999998653 45688888776655556789999999999999999863
Q ss_pred CCCC----HHHHHHHhCCCHHHHHHHHHHHHHhhc
Q psy6534 260 DKRS----QKEIGDIAGVAEVTIRQSYKLMYPHAS 290 (309)
Q Consensus 260 ~~~~----~~~ia~~~~vs~~ti~~~~kei~~~~~ 290 (309)
.+.+ +++++..+|+++.+|+.+++.|.+...
T Consensus 213 ~~~~w~~~~~~l~~~tg~~~~~l~~c~~~i~~~~~ 247 (254)
T 2f2c_A 213 NCRPWTCYLEDLSSILNFSTNTVRTVKDQVSEAFS 247 (254)
T ss_dssp SSCCTHHHHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 4455 889999999999999999999987754
No 15
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A
Probab=99.83 E-value=3.8e-19 Score=161.90 Aligned_cols=184 Identities=14% Similarity=0.138 Sum_probs=152.8
Q ss_pred HHHH-HHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHhcCCCccHHHHHHHhccc
Q psy6534 104 DRAL-LNAIREINSMADRIN--LTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKIS 180 (309)
Q Consensus 104 ~~~l-~~~~~~I~~i~~~L~--Lp~~v~e~A~~~~~~~~~~~~~~gr~~~~vaaAcly~acR~~~~~~tl~eia~~~~~~ 180 (309)
|..+ ..+..+|.++|..|+ ||+.+..+|..||++++..+.+++.++..+++||+|+|||.++.|++++||+..+..+
T Consensus 53 E~~lr~~~~~~I~ev~~~l~~~Lp~~t~~tA~~~~~RF~~~~s~~~~~~~lva~acLfLA~K~EE~~~~l~d~v~~~~~~ 132 (323)
T 1jkw_A 53 EMTLCKYYEKRLLEFCSVFKPAMPRSVVGTACMYFKRFYLNNSVMEYHPRIIMLTCAFLACKVDEFNVSSPQFVGNLRES 132 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHHHHHHHGGGSCTTTSCHHHHHHHHHHHHHHHTTCCCCHHHHGGGSSSC
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhCChhhcCHHHHHHHHHHHHHhhhcCCCCHHHHHHHhccC
Confidence 4454 456799999999999 9999999999999999999999999999999999999999999999999999876544
Q ss_pred -------HHHHHHHHHHHHHHhcccCCCCChHHHHHHHHhhC-------CCCHHHHHHHHHHHHHhhhcCccCCCChHHH
Q psy6534 181 -------KKEIGRCFKLILKALETSVDLITTGDFMSRFCSNL-------SLPNMVQKAATHIARKAVELDIVPGRSPISV 246 (309)
Q Consensus 181 -------~~~i~~~~~~l~~~l~~~~~~~~p~~~i~~~~~~L-------~l~~~~~~~a~~i~~~~~~~~l~~Gr~P~~i 246 (309)
.++|.++.+.|.+.|++++.+.+|..|+.+|+..+ +.+..+...|+.+++.+....+..+..|+.|
T Consensus 133 p~~~~~~~~~Il~~E~~iL~~L~f~l~v~~P~~~L~~~l~~l~~~~~~~~~~~~l~~~A~~~l~~sl~t~~~l~~~Ps~I 212 (323)
T 1jkw_A 133 PLGQEKALEQILEYELLLIQQLNFHLIVHNPYRPFEGFLIDLKTRYPILENPEILRKTADDFLNRIALTDAYLLYTPSQI 212 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSHHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHTTSTHHHHSCHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHCCCcEEcCChHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhccHHHcCCHHHH
Confidence 57899999999999999999999999999999765 3345678899999999888777789999999
Q ss_pred HHHHHHHHHHhCCCCCCH--HHHHH--HhCCCHHHHHHHHHHHHH
Q psy6534 247 AAAAIYMASQASSDKRSQ--KEIGD--IAGVAEVTIRQSYKLMYP 287 (309)
Q Consensus 247 aaAaiyla~~~~~~~~~~--~~ia~--~~~vs~~ti~~~~kei~~ 287 (309)
|+||||+|++..|.+++. .++-. ..+.+...+....++|..
T Consensus 213 AaAai~lA~~~~~~~~~~w~~~l~~~~~~~~~~~~l~~~~~~i~~ 257 (323)
T 1jkw_A 213 ALTAILSSASRAGITMESYLSESLMLKENRTCLSQLLDIMKSMRN 257 (323)
T ss_dssp HHHHHHHHHHHHSCCCTTHHHHHTTSCSSSCCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCChHHHHHHHhccccccccHHHHHHHHHHHHH
Confidence 999999999998876542 22211 123355555555555543
No 16
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=99.80 E-value=3.7e-18 Score=152.70 Aligned_cols=177 Identities=19% Similarity=0.180 Sum_probs=152.3
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcC-CCCCCCchhHHHHHHHHHHHHhcCC-CccHHHHHHHh--cccHHH
Q psy6534 108 LNAIREINSMADRINLTKTIVDRANNLFKQVHDG-KNLKGRSNDAIASACLYIACRQEGV-PRTFKEICAVS--KISKKE 183 (309)
Q Consensus 108 ~~~~~~I~~i~~~L~Lp~~v~e~A~~~~~~~~~~-~~~~gr~~~~vaaAcly~acR~~~~-~~tl~eia~~~--~~~~~~ 183 (309)
....++|.+++..++++..+.-.|..+++++... +.+++++.+.+++||+|+|||.++. |++++|++..+ .++.++
T Consensus 51 ~~lv~wl~~v~~~~~l~~~tl~lAv~~lDRfls~~~~v~~~~lqlv~~acL~iA~K~eE~~~p~l~~~~~i~~~~~~~~e 130 (283)
T 1w98_B 51 AILLDWLMEVCEVYKLHRETFYLAQDFFDRYMATQENVVKTLLQLIGISSLFIAAKLEEIYPPKLHQFAYVTDGACSGDE 130 (283)
T ss_dssp HHHHHHHHHHHHHTTCBHHHHHHHHHHHHHHHHHCCCCCGGGHHHHHHHHHHHHHHHHCSSCCCHHHHHHTTTTSSCHHH
T ss_pred HHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHcCCCCHHH
Confidence 3456889999999999999999999999999986 6778889999999999999999987 89999999887 478999
Q ss_pred HHHHHHHHHHHhcccCCCCChHHHHHHHHhhCCCCHH-----------HHHHHHHHHHHhhhcCccCCCChHHHHHHHHH
Q psy6534 184 IGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNM-----------VQKAATHIARKAVELDIVPGRSPISVAAAAIY 252 (309)
Q Consensus 184 i~~~~~~l~~~l~~~~~~~~p~~~i~~~~~~L~l~~~-----------~~~~a~~i~~~~~~~~l~~Gr~P~~iaaAaiy 252 (309)
|.++.+.|.+.|+.++..++|..|+.+|++.+++++. ....+.++++.+.......+.+|+.|||||||
T Consensus 131 i~~mE~~IL~~L~~~l~~~tp~~fL~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~llelsl~d~~~l~~~PS~iAaAai~ 210 (283)
T 1w98_B 131 ILTMELMIMKALKWRLSPLTIVSWLNVYMQVAYLNDLHEVLLPQYPQQIFIQIAELLDLCVLDVDCLEFPYGILAASALY 210 (283)
T ss_dssp HHHHHHHHHHHTTTCCCCCCHHHHHHHHHHHHTCCSSCCSSSCCSCHHHHHHHHHHHHHHHHSGGGGGSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCcCCCCCHHHHHHHHHHHhccCchhhHHHHhhhHHHHHHHHHHHHHHHhhhhhhcCCHHHHHHHHHH
Confidence 9999999999999999999999999999998876432 22345567766654444678999999999999
Q ss_pred HHHHhCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHhhcc
Q psy6534 253 MASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASK 291 (309)
Q Consensus 253 la~~~~~~~~~~~~ia~~~~vs~~ti~~~~kei~~~~~~ 291 (309)
+|+ .++.+...+|+++.+|+.+++.|.+....
T Consensus 211 la~-------~~~~l~~~tg~~~~~i~~c~~~l~~~~~~ 242 (283)
T 1w98_B 211 HFS-------SSELMQKVSGYQWCDIENCVKWMVPFAMV 242 (283)
T ss_dssp HTS-------CHHHHHHHSCCCHHHHHHHHHHHHHHHHH
T ss_pred HHH-------ChHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 985 37889999999999999999999765543
No 17
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}
Probab=99.78 E-value=1.2e-17 Score=150.80 Aligned_cols=186 Identities=16% Similarity=0.188 Sum_probs=160.7
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHhcC-CCccHHHHHHHhc--ccHHHH
Q psy6534 108 LNAIREINSMADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEG-VPRTFKEICAVSK--ISKKEI 184 (309)
Q Consensus 108 ~~~~~~I~~i~~~L~Lp~~v~e~A~~~~~~~~~~~~~~gr~~~~vaaAcly~acR~~~-~~~tl~eia~~~~--~~~~~i 184 (309)
....++|.+++..++|+..+.-.|..|+++++....++......++++|+|+|||.+. .|.++.+++..++ .+.++|
T Consensus 72 ~~lvdwl~ev~~~~~l~~~t~~lAv~~lDRfls~~~v~~~~lqLv~~tcL~lAsK~eE~~p~~~~~l~~~~~~~~~~~~i 151 (306)
T 3g33_B 72 KMLAYWMLEVCEEQRCEEEVFPLAMNYLDRYLSCVPTRKAQLQLLGAVCMLLASKLRETTPLTIEKLCIYTDHAVSPRQL 151 (306)
T ss_dssp HHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHHCCCCGGGHHHHHHHHHHHHHHHHCSSCCCTTHHHHHTTTSSCHHHH
T ss_pred HHHHHHHHHHHHHhCCcHhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHhccCccHHHH
Confidence 4567899999999999999999999999999998888888999999999999999866 5789999998875 789999
Q ss_pred HHHHHHHHHHhcccCCCCChHHHHHHHHhhCCCCHH----HHHHHHHHHHHhhhcCccCCCChHHHHHHHHHHHHHhCCC
Q psy6534 185 GRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNM----VQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSD 260 (309)
Q Consensus 185 ~~~~~~l~~~l~~~~~~~~p~~~i~~~~~~L~l~~~----~~~~a~~i~~~~~~~~l~~Gr~P~~iaaAaiyla~~~~~~ 260 (309)
.++.+.|.+.|++++...+|..|+.+|+..++++.+ +...|..+++.+.......+..|+.|||||||+|.+..+.
T Consensus 152 ~~mE~~IL~~L~f~l~~~tp~~fl~~~l~~l~~~~~~~~~~~~~a~~~l~lsl~d~~~l~~~PS~IAaAai~lA~~~l~~ 231 (306)
T 3g33_B 152 RDWEVLVLGKLKWDLAAVIAHDFLAFILHRLSLPRDRQALVKKHAQTFLALCATDYTFAMYPPSMIATGSIGAAVQGLGA 231 (306)
T ss_dssp HHHHHHHHHHTTTCCCCCCGGGGHHHHHHTSSCCTTTHHHHHHHHHHHHHHHHHCGGGTTSCHHHHHHHHHHHHHHTCC-
T ss_pred HHHHHHHHHHcCCccCCCCHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHhhhhhccCCHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999988643 4566788888776666667899999999999999998875
Q ss_pred CC-C----HHHHHHHhCCCHHHHHHHHHHHHHhhcccC
Q psy6534 261 KR-S----QKEIGDIAGVAEVTIRQSYKLMYPHASKLF 293 (309)
Q Consensus 261 ~~-~----~~~ia~~~~vs~~ti~~~~kei~~~~~~l~ 293 (309)
.. + ...++..+|+++.+|+.+++.|.+....-+
T Consensus 232 ~~~w~~~w~~~L~~~tg~~~~~l~~c~~~I~~l~~~~l 269 (306)
T 3g33_B 232 CSMSGDELTELLAGITGTEVDCLRACQEQIEAALRESL 269 (306)
T ss_dssp --CCHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTC-
T ss_pred CCCchhhHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Confidence 43 2 367889999999999999999987655433
No 18
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, transcription factor, DNA-binding, DNA-directed RNA polymerase; 4.30A {Saccharomyces cerevisiae}
Probab=99.77 E-value=8e-20 Score=145.86 Aligned_cols=66 Identities=30% Similarity=0.637 Sum_probs=58.2
Q ss_pred CcccCCCCCC--CCeeeeCCCCceecCCCCccccCcccccCCCcccccCCC-CCCCCCCCCCCCCCccc
Q psy6534 4 NKVCCYEHPD--APLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEK-SGVDPSRVGGPENPLLN 69 (309)
Q Consensus 4 ~~~~Cp~C~~--~~~v~D~~~G~~vC~~CG~V~~e~~id~~~ewr~f~~~~-~~~~~sr~g~~~~~~~~ 69 (309)
....||+||+ .++++|+++|++||.+||+|++|++||.|||||+|++++ ++.|++|+|+|.++...
T Consensus 20 ~~~~CPECGs~~t~IV~D~erGE~VCsdCGLVLEEriID~GPEWRAFsnDD~~~dDpSRVGAPs~~~~~ 88 (197)
T 3k1f_M 20 IVLTCPECKVYPPKIVERFSEGDVVCALCGLVLSDKLVDTRSEWRTFSNXXXXXXXXXXXXXXXXXXXX 88 (197)
T ss_dssp CCCCCTTTCCSSCCEEEEGGGTEEEETTTCBBCCCCCBCHHHHHHHHHCCCTTTTCSCCCBCCBCCHHH
T ss_pred cCeECcCCCCcCCeEEEeCCCCEEEEcCCCCCcCCceeECCCCCcCcCCcccccccccccccccccccc
Confidence 3458999998 479999999999999999999999999999999999765 46789999999886543
No 19
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=99.73 E-value=1.8e-18 Score=116.14 Aligned_cols=47 Identities=81% Similarity=1.437 Sum_probs=44.1
Q ss_pred cccCCCCCCCCeeeeCCCCceecCCCCccccCcccccCCCcccccCC
Q psy6534 5 KVCCYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNE 51 (309)
Q Consensus 5 ~~~Cp~C~~~~~v~D~~~G~~vC~~CG~V~~e~~id~~~ewr~f~~~ 51 (309)
.+.||+|++..+++|+.+|++||.+||+|++|++||.|||||+|+++
T Consensus 11 ~~~Cp~C~~~~lv~D~~~ge~vC~~CGlVl~e~~iD~gpEWR~F~~~ 57 (58)
T 1dl6_A 11 RVTCPNHPDAILVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSND 57 (58)
T ss_dssp CCSBTTBSSSCCEECSSSCCEECTTTCCEECCSCCCCCCSCCCSCCC
T ss_pred cccCcCCCCCceeEeCCCCeEEeCCCCCEEeccccccCCcccccCCC
Confidence 45899999988999999999999999999999999999999999875
No 20
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=99.67 E-value=5.6e-17 Score=106.19 Aligned_cols=49 Identities=37% Similarity=0.800 Sum_probs=46.9
Q ss_pred CCCCcccCCCCCCCCeeeeCCCCceecCCCCccccCcccccCCCccccc
Q psy6534 1 MNINKVCCYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFS 49 (309)
Q Consensus 1 ~~~~~~~Cp~C~~~~~v~D~~~G~~vC~~CG~V~~e~~id~~~ewr~f~ 49 (309)
|+...+.||.||+..+++|+.+|+++|..||+|++++.||.|||||+|+
T Consensus 1 m~~~~~~CP~C~~~~l~~d~~~gelvC~~CG~v~~e~~id~~~ewr~f~ 49 (50)
T 1pft_A 1 MVNKQKVCPACESAELIYDPERGEIVCAKCGYVIEENIIDMGPEWRAFD 49 (50)
T ss_dssp CCSSCCSCTTTSCCCEEEETTTTEEEESSSCCBCCCCCCCCCSSSSCCC
T ss_pred CCCccEeCcCCCCcceEEcCCCCeEECcccCCcccccccccCCcccccC
Confidence 8888999999998789999999999999999999999999999999996
No 21
>1f5q_B Gamma herpesvirus cyclin; herpesviral cyclin, cyclin dependent kinase. protein/protein complex, transferase; 2.50A {Murid herpesvirus 4} SCOP: a.74.1.1 a.74.1.1
Probab=99.51 E-value=1.6e-12 Score=113.87 Aligned_cols=182 Identities=9% Similarity=0.059 Sum_probs=149.4
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHhcCC-CccHHHHHHHh--cccHHHHH
Q psy6534 109 NAIREINSMADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGV-PRTFKEICAVS--KISKKEIG 185 (309)
Q Consensus 109 ~~~~~I~~i~~~L~Lp~~v~e~A~~~~~~~~~~~~~~gr~~~~vaaAcly~acR~~~~-~~tl~eia~~~--~~~~~~i~ 185 (309)
...++|.+++..++|...+.-.|..+++++.....++......++++|+|+|+|.+.. |.++.+++..+ ..+.++|.
T Consensus 51 ~lvdWl~ev~~~~~l~~eT~~lAv~~lDRfLs~~~v~~~~lqLvg~tcl~iAsK~eE~~p~~~~~l~~~~~~~yt~~~i~ 130 (252)
T 1f5q_B 51 VLTTWMFCVCKDLRQDNNVFPLAVALLDELFLSTRIDRENYQSTAAVALHIAGKVRAYMPIKATQLAYLCGGATTADKLL 130 (252)
T ss_dssp HHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHHSCCCGGGHHHHHHHHHHHHHHHHCSSCCCHHHHHHHHCTTCCHHHHH
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhCCCCCHHHHH
Confidence 4568899999999999999999999999999877777778999999999999998775 88999998876 46899999
Q ss_pred HHHHHHHHHhcccCCCCChHHHHHHHHhhCCCCHH----HHHHHHHHHHHhhhcCccCCCChHHHHHHHHHHHHHhCCCC
Q psy6534 186 RCFKLILKALETSVDLITTGDFMSRFCSNLSLPNM----VQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDK 261 (309)
Q Consensus 186 ~~~~~l~~~l~~~~~~~~p~~~i~~~~~~L~l~~~----~~~~a~~i~~~~~~~~l~~Gr~P~~iaaAaiyla~~~~~~~ 261 (309)
++.+.|.+.|+.++..++|..|+.+|...++.+.+ +...|..++..+.-..-....+|+.|||||+.++. .+..
T Consensus 131 ~mE~~IL~~L~w~l~~pTp~~FL~~~l~~~~~~~~~~~~~~~~a~~~l~~~l~d~~~l~~~PS~iAaaa~~~~l--~~~~ 208 (252)
T 1f5q_B 131 TLEVKSLDTLSWVADRCLSTDLICYILHIMHAPREDYLNIYNLCRPKIFCALCDGRSAMKRPVLITLACMHLTM--NQKY 208 (252)
T ss_dssp HHHHHHHHHTTTCCCCCCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHCHHHHTSCHHHHHHHHHHHHH--TTTC
T ss_pred HHHHHHHHHCCCccCCCCHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHHHhchhhhccCHHHHHHHHHHHHh--ccCC
Confidence 99999999999999999999999999999998864 33456666665543333457899999999965554 2222
Q ss_pred CC----HHHHHHHhCCCHHHHHHHHHHHHHhhccc
Q psy6534 262 RS----QKEIGDIAGVAEVTIRQSYKLMYPHASKL 292 (309)
Q Consensus 262 ~~----~~~ia~~~~vs~~ti~~~~kei~~~~~~l 292 (309)
.+ ...++..+|++...++..++.|.+.....
T Consensus 209 ~~~~~~~~~L~~~t~~~~~~l~~C~~~i~~~l~~~ 243 (252)
T 1f5q_B 209 DYYENRIDGVCKSLYITKEELHQCCDLVDIAIVSF 243 (252)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHC
T ss_pred CchhhHHHHHHHHHCcCHHHHHHHHHHHHHHHHHh
Confidence 22 34678889999999999999998776433
No 22
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B*
Probab=99.44 E-value=5.9e-13 Score=112.89 Aligned_cols=91 Identities=24% Similarity=0.421 Sum_probs=86.8
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHhcCCCccHHHHHHHhcccHHHHHHHHHH
Q psy6534 111 IREINSMADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGRCFKL 190 (309)
Q Consensus 111 ~~~I~~i~~~L~Lp~~v~e~A~~~~~~~~~~~~~~gr~~~~vaaAcly~acR~~~~~~tl~eia~~~~~~~~~i~~~~~~ 190 (309)
...|.++|..|+||+.+.+.|..+++.+.+.+...|+++..+||||+|+|||.++.+++++||+.+++++..+|++.|+.
T Consensus 109 ~~~i~r~~~~L~l~~~v~~~A~~i~~~~~~~~~~~gr~P~~iAaAaly~A~~~~~~~~t~~ei~~~~~vs~~ti~~~~~~ 188 (200)
T 1ais_B 109 TDYVNKFADELGLSEKVRRRAIEILDEAYKRGLTSGKSPAGLVAAALYIASLLEGEKRTQREVAEVARVTEVTVRNRYKE 188 (200)
T ss_dssp GGGHHHHHHHHTCCHHHHHHHHHHHHHHHHTTCCTTSCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHhCCCCCHHHHHHHhCCCHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcccCCC
Q psy6534 191 ILKALETSVDL 201 (309)
Q Consensus 191 l~~~l~~~~~~ 201 (309)
|.+.|++++++
T Consensus 189 l~~~l~~~~~~ 199 (200)
T 1ais_B 189 LVEKLKIKVPI 199 (200)
T ss_dssp HHHHHTCCCCC
T ss_pred HHHHcCCCCCC
Confidence 99999987653
No 23
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=99.32 E-value=7.1e-12 Score=114.63 Aligned_cols=109 Identities=17% Similarity=0.231 Sum_probs=84.5
Q ss_pred CCChHHHHHHHHhhCCCCHHHHHHHHHHHHHhhhcCccCCCChHHHHHHHHHHHHHhCCCCCCHHHHHHHhCCCHHHHHH
Q psy6534 201 LITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQ 280 (309)
Q Consensus 201 ~~~p~~~i~~~~~~L~l~~~~~~~a~~i~~~~~~~~l~~Gr~P~~iaaAaiyla~~~~~~~~~~~~ia~~~~vs~~ti~~ 280 (309)
.......|.++|+.|+||+.+.+.|..+++.+.+..++.||+...+||||||+|||..+.+++++||++.++|+...|.+
T Consensus 126 L~~a~~~I~~~~~~L~Lp~~v~d~A~~lyk~a~~~~~~rGrs~e~vaAAclYiACR~~~~prtl~eI~~~~~v~~keigr 205 (345)
T 4bbr_M 126 VQAAFAKITMLCDAAELPKIVKDCAKEAYKLCHDEKTLKGKSMESIMAASILIGCRRAEVARTFKEIQSLIHVKTKEFGK 205 (345)
T ss_dssp TTHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTTTTCCHHHHHHHHHHHHHHHTCCBCCHHHHHHHHTCCTTHHHH
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccCCCHHHHHHHHHHHHHHhcCCCccHHHHHHHhCCCHHHHHH
Confidence 34567789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcccCC--------CCcCCCCCCCCCCCC
Q psy6534 281 SYKLMYPHASKLFP--------QDFVFHTPIHELPQL 309 (309)
Q Consensus 281 ~~kei~~~~~~l~~--------~~~~~~~~~~~~~~~ 309 (309)
.|+.|.+.....-. .+.+..+|-+|||+.
T Consensus 206 ~~k~l~~~L~l~~~~~~~~~~~~~~~~~~p~~~i~Rf 242 (345)
T 4bbr_M 206 TLNIMKNILRGKSEDGFLKIDTDNMSGAQNLTYIPRF 242 (345)
T ss_dssp HHHHHHHCC----------------------------
T ss_pred HHHHHHHHhCccccccccccccccCCCCCHHHHHHHH
Confidence 99999987653211 124566788888863
No 24
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A*
Probab=99.23 E-value=3.8e-11 Score=102.20 Aligned_cols=91 Identities=20% Similarity=0.282 Sum_probs=85.7
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHhcCCCccHHHHHHHhcccHHHHHHHHH
Q psy6534 110 AIREINSMADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGRCFK 189 (309)
Q Consensus 110 ~~~~I~~i~~~L~Lp~~v~e~A~~~~~~~~~~~~~~gr~~~~vaaAcly~acR~~~~~~tl~eia~~~~~~~~~i~~~~~ 189 (309)
.+..|.+++..|++|+.+.+.|..+++.+.+.....|+++..+||||+|+||+.++.+++.+||++.++++..+|++.|+
T Consensus 102 p~~~l~r~~~~l~l~~~~~~~A~~i~~~~~~~~l~~g~~P~~IAaAaiylA~~~~~~~~~~~~i~~~~~v~~~tI~~~~~ 181 (207)
T 1c9b_A 102 TGDFMSRFCSNLCLPKQVQMAATHIARKAVELDLVPGRSPISVAAAAIYMASQASAEKRTQKEIGDIAGVADVTIRQSYR 181 (207)
T ss_dssp THHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTCSTTCCHHHHHHHHHHHHHHTSSSCCCHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCccCCCChHHHHHHHHHHHHHHHCCCCCHHHHHHHhCCCHHHHHHHHH
Confidence 35788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcccCC
Q psy6534 190 LILKALETSVD 200 (309)
Q Consensus 190 ~l~~~l~~~~~ 200 (309)
.|.+.++..+|
T Consensus 182 ~l~~~l~~~~p 192 (207)
T 1c9b_A 182 LIYPRAPDLFP 192 (207)
T ss_dssp HHGGGHHHHSC
T ss_pred HHHHHHHHhCh
Confidence 99998886553
No 25
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=99.06 E-value=9.2e-11 Score=107.46 Aligned_cols=105 Identities=17% Similarity=0.233 Sum_probs=83.4
Q ss_pred hHHHHHHHHhhCCCCHHHHHHHHHHHHHhhhcCccCCCChHHHHHHHHHHHHHhCCCCCCHHHHHHHhCCCHHHHHHHHH
Q psy6534 204 TGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283 (309)
Q Consensus 204 p~~~i~~~~~~L~l~~~~~~~a~~i~~~~~~~~l~~Gr~P~~iaaAaiyla~~~~~~~~~~~~ia~~~~vs~~ti~~~~k 283 (309)
...+|.++++.|+||..+.+.|..+++++.....+.||++..+||||||+|||..+.+++++||+..++++...|.+.|+
T Consensus 129 a~~~I~~~~~~L~Lp~~v~d~A~~lyk~~~~~~~~kgr~~~~vaaAclyiAcR~e~~prtl~ei~~~~~v~~keIgr~~~ 208 (345)
T 3k7a_M 129 AFAKITMLCDAAELPKIVKDCAKEAYKLCHDEKTLKGKSMESIMAASILIGCRRAEVARTFKEIQSLIHVKTKEFGKTLN 208 (345)
T ss_dssp HHHHHHHHHHHTTCCHHHHTHHHHHHHHHSSSCSSCCCCSHHHHTTTTTTTSBTTBSSCCHHHHHHSSSCCSHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcccCCcHHHHHHHHHHHHHHHcCCCccHHHHHHHHCCCHHHHHHHHH
Confidence 45688999999999999999999999999998899999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcccC--------CCCcCCCCCCCCCCC
Q psy6534 284 LMYPHASKLF--------PQDFVFHTPIHELPQ 308 (309)
Q Consensus 284 ei~~~~~~l~--------~~~~~~~~~~~~~~~ 308 (309)
.|.+...... ..+.+..+|-++||+
T Consensus 209 ~l~~~L~~~~~~~~~~~~~~~~~~~~p~~~i~R 241 (345)
T 3k7a_M 209 IMKNILRGKSEDGFLKIDTDNMSGAQNLTYIPR 241 (345)
T ss_dssp HHHHHHTCC------------------------
T ss_pred HHHHHHhhhhccccccccccccCCCCHHHHHHH
Confidence 9998866320 123455677777775
No 26
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe}
Probab=98.34 E-value=5.1e-06 Score=71.68 Aligned_cols=85 Identities=15% Similarity=0.088 Sum_probs=76.7
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHhhhcCccCC-CChHHHHHHHHHHHHHhCCCCCCHHHHHHHh--------CCCH
Q psy6534 205 GDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPG-RSPISVAAAAIYMASQASSDKRSQKEIGDIA--------GVAE 275 (309)
Q Consensus 205 ~~~i~~~~~~L~l~~~~~~~a~~i~~~~~~~~l~~G-r~P~~iaaAaiyla~~~~~~~~~~~~ia~~~--------~vs~ 275 (309)
.++|.+++.+|+|+..+...|..++++......+.+ ++|..+++||+|+||+..+.++++++|+..+ ..+.
T Consensus 32 ~~~i~~v~~~l~L~~~t~~~A~~~~~Rf~~~~~~~~~~~~~lv~~acL~lA~K~Ee~~~~l~d~~~~~~~~~~~~~~~~~ 111 (235)
T 1zp2_A 32 WKVVQTFGDRLRLRQRVLATAIVLLRRYMLKKNEEKGFSLEALVATCIYLSCKVEECPVHIRTICNEANDLWSLKVKLSR 111 (235)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCSCCCCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHTTCCCSSCCCH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcccccccCHHHHHHHHHHHHhccccCcccHHHHHHHHHHHccchhhccH
Confidence 467899999999999999999999999887766677 9999999999999999999999999999876 5789
Q ss_pred HHHHHHHHHHHHhh
Q psy6534 276 VTIRQSYKLMYPHA 289 (309)
Q Consensus 276 ~ti~~~~kei~~~~ 289 (309)
..|.+..+.|.+..
T Consensus 112 ~~I~~~E~~iL~~L 125 (235)
T 1zp2_A 112 SNISEIEFEIISVL 125 (235)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHC
Confidence 99999999988774
No 27
>3h4c_A Transcription factor TFIIB-like; cyclin, transcription factor TFIIB repeat; 2.30A {Trypanosoma brucei brucei}
Probab=97.86 E-value=0.00035 Score=57.34 Aligned_cols=108 Identities=18% Similarity=0.313 Sum_probs=75.6
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCCC---chhHHHHHHHHHHHHhcCCCccHHHHHHHhcccHHHHHHH
Q psy6534 111 IREINSMADRINLTKTIVDRANNLFKQVHDGKNLKGR---SNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGRC 187 (309)
Q Consensus 111 ~~~I~~i~~~L~Lp~~v~e~A~~~~~~~~~~~~~~gr---~~~~vaaAcly~acR~~~~~~tl~eia~~~~~~~~~i~~~ 187 (309)
.+.|..+..+-++|+.+.+.|.++.+.+...+--+|. +...++|||+.+|..+.+.|+++.|+-..- -+..++.--
T Consensus 16 ~nclr~L~kKs~~~eaVL~~AieLar~fvg~rR~rgqRvE~q~dVAAAc~miAae~~~~PiplaE~r~lD-~sL~Dvelr 94 (260)
T 3h4c_A 16 LNCMRGLHKKAVLPEPVLDRGIELARAFVGGRRARGQRVERQPDVAAACLMIAAEEAQQPLPLAEVRCLD-SSLGDVELR 94 (260)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHC-TTCCCHHHH
T ss_pred HHHHHHHHhhccCcHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHHHHHHHcCCCccHHHHHHHh-hhhhHHHHH
Confidence 4677888899999999999999999999765433343 467999999999999999999999986543 222244333
Q ss_pred HHHHHHHhcccCC-----CCChHHHHHHHHhhCCCCH
Q psy6534 188 FKLILKALETSVD-----LITTGDFMSRFCSNLSLPN 219 (309)
Q Consensus 188 ~~~l~~~l~~~~~-----~~~p~~~i~~~~~~L~l~~ 219 (309)
.-.|.+.++.... ..-...++..|..+|+|+-
T Consensus 95 r~Eiv~~l~l~e~e~rl~~~~~~NLl~~Yv~kL~Lq~ 131 (260)
T 3h4c_A 95 RADIVRELHLEDSERRLRDTFADNLLVKYILKLGLQV 131 (260)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHTTCCH
T ss_pred HHHHHHHccCCHHHHHHHHHhhhhHHHHHHHHhccch
Confidence 3344454443210 0112356777888888864
No 28
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B*
Probab=97.81 E-value=0.00024 Score=61.94 Aligned_cols=67 Identities=9% Similarity=0.186 Sum_probs=61.9
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHhhhcCccCCCChHHHHHHHHHHHHHhCCCCCCHHHHHHHh
Q psy6534 205 GDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIA 271 (309)
Q Consensus 205 ~~~i~~~~~~L~l~~~~~~~a~~i~~~~~~~~l~~Gr~P~~iaaAaiyla~~~~~~~~~~~~ia~~~ 271 (309)
.++|.+++.+|+|+..+...|..++++......+.+++|..+++||+|+||+..+.++++++|...+
T Consensus 35 ~~~i~~v~~~l~l~~~t~~~A~~~~dRf~~~~~~~~~~~qlv~~acL~lA~K~EE~p~~l~d~~~~~ 101 (257)
T 2ivx_A 35 ANLIQEMGQRLNVSQLTINTAIVYMHRFYMHHSFTKFNKNIISSTALFLAAKVEEQARKLEHVIKVA 101 (257)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTSCTTTSCHHHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHHHHHhhCChhhhCHHHHHHHHHHHHhccccCCcCHHHHHHHH
Confidence 4688899999999999999999999999887778899999999999999999999999999998765
No 29
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=97.80 E-value=0.00012 Score=63.77 Aligned_cols=68 Identities=12% Similarity=0.101 Sum_probs=61.7
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHhhhcCccCCCChHHHHHHHHHHHHHhCCCCCCHHHHHHHhC
Q psy6534 205 GDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAG 272 (309)
Q Consensus 205 ~~~i~~~~~~L~l~~~~~~~a~~i~~~~~~~~l~~Gr~P~~iaaAaiyla~~~~~~~~~~~~ia~~~~ 272 (309)
.++|.+++.+|+++..+...|..++++......+.++++..+++||+|+||+..+.++++++|...+.
T Consensus 45 ~~~i~~v~~~l~l~~~t~~~A~~~~dRf~~~~~~~~~~~qlv~~acL~lA~K~eE~~~~l~d~~~~~~ 112 (258)
T 2i53_A 45 ARFIFDVGTRLGLHYDTLATGIIYFHRFYMFHSFKQFPRYVTGACCLFLAGKVEETPKKCKDIIKTAR 112 (258)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTSCTTTSCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCChhhcCHHHHHHHHHHHHHccccccccHHHHHHHHH
Confidence 36888999999999999999999999998877788999999999999999999999999999987643
No 30
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A
Probab=97.79 E-value=0.00016 Score=65.31 Aligned_cols=84 Identities=14% Similarity=0.111 Sum_probs=71.0
Q ss_pred HHHHHHHhhCC--CCHHHHHHHHHHHHHhhhcCccCCCChHHHHHHHHHHHHHhCCCCCCHHHHHHHhCCC-------HH
Q psy6534 206 DFMSRFCSNLS--LPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVA-------EV 276 (309)
Q Consensus 206 ~~i~~~~~~L~--l~~~~~~~a~~i~~~~~~~~l~~Gr~P~~iaaAaiyla~~~~~~~~~~~~ia~~~~vs-------~~ 276 (309)
.+|.+++..|+ |+..+..+|..++++......+.+.+|..|++||+|+||+..+.++++++|+..+..+ ..
T Consensus 62 ~~I~ev~~~l~~~Lp~~t~~tA~~~~~RF~~~~s~~~~~~~lva~acLfLA~K~EE~~~~l~d~v~~~~~~p~~~~~~~~ 141 (323)
T 1jkw_A 62 KRLLEFCSVFKPAMPRSVVGTACMYFKRFYLNNSVMEYHPRIIMLTCAFLACKVDEFNVSSPQFVGNLRESPLGQEKALE 141 (323)
T ss_dssp HHHHHHHHHCTTTCCHHHHHHHHHHHHHHGGGSCTTTSCHHHHHHHHHHHHHHHTTCCCCHHHHGGGSSSCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhCChhhcCHHHHHHHHHHHHHhhhcCCCCHHHHHHHhccChhhhHHHHH
Confidence 56888999999 9999999999999999888888899999999999999999999999999998766555 34
Q ss_pred HHHHHHHHHHHhh
Q psy6534 277 TIRQSYKLMYPHA 289 (309)
Q Consensus 277 ti~~~~kei~~~~ 289 (309)
.|.+..+.|.+..
T Consensus 142 ~Il~~E~~iL~~L 154 (323)
T 1jkw_A 142 QILEYELLLIQQL 154 (323)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHC
Confidence 5666666665543
No 31
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}
Probab=97.72 E-value=0.0003 Score=62.33 Aligned_cols=85 Identities=14% Similarity=0.101 Sum_probs=72.0
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHhhhcCccCCCChHHHHHHHHHHHHHhCCCCC-CHHHHHHHhC-----------
Q psy6534 205 GDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKR-SQKEIGDIAG----------- 272 (309)
Q Consensus 205 ~~~i~~~~~~L~l~~~~~~~a~~i~~~~~~~~l~~Gr~P~~iaaAaiyla~~~~~~~~-~~~~ia~~~~----------- 272 (309)
.++|.+++.+|+|+..+..+|..++++......+.+++|..+++||+|+||+....++ ++++|...+.
T Consensus 47 ~~~I~~v~~~l~L~~~t~~tA~~~~~RF~~~~s~~~~~~~lva~acLfLA~K~EE~~~~~~~di~~~~~~~~k~~~~~~~ 126 (285)
T 3rgf_B 47 TNVIQALGEHLKLRQQVIATATVYFKRFYARYSLKSIDPVLMAPTCVFLASKVEEFGVVSNTRLIAAATSVLKTRFSYAF 126 (285)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHHHCTTTC
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhCCchhcCHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHcccccccC
Confidence 3678899999999999999999999999888888899999999999999999999876 6888876542
Q ss_pred -----CCHHHHHHHHHHHHHhh
Q psy6534 273 -----VAEVTIRQSYKLMYPHA 289 (309)
Q Consensus 273 -----vs~~ti~~~~kei~~~~ 289 (309)
.+...|.+..+.|.+..
T Consensus 127 ~~~~~~~~~~Il~~E~~iL~~L 148 (285)
T 3rgf_B 127 PKEFPYRMNHILECEFYLLELM 148 (285)
T ss_dssp CSCCCCCHHHHHHHHHHHHHHT
T ss_pred chhhHHHHHHHHHHHHHHHHHc
Confidence 35677877777777653
No 32
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B*
Probab=97.48 E-value=0.00088 Score=58.75 Aligned_cols=85 Identities=14% Similarity=0.126 Sum_probs=75.7
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHhhhcCccCCCChHHHHHHHHHHHHHhCCC-CCCHHHHHHHhC--CCHHHHHHH
Q psy6534 205 GDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSD-KRSQKEIGDIAG--VAEVTIRQS 281 (309)
Q Consensus 205 ~~~i~~~~~~L~l~~~~~~~a~~i~~~~~~~~l~~Gr~P~~iaaAaiyla~~~~~~-~~~~~~ia~~~~--vs~~ti~~~ 281 (309)
-+++..++..++++.++.-.|..++++......+.++++..+++||+|+||+.... +.+.+|++..++ .+...|.+.
T Consensus 42 v~wl~~v~~~~~l~~~tl~lAv~~lDRfl~~~~v~~~~lqlv~~acL~iA~K~eE~~~p~~~d~~~~~~~~~~~~eI~~m 121 (269)
T 2b9r_A 42 IDWLVQVQMKFRLLQETMYMTVSIIDRFMQNNSVPKKMLQLVGVTAMFIASKYEEMYPPEIGDFAFVTDNTYTKHQIRQM 121 (269)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHTTSCCCGGGHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTCSSSCHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCcHHHhhHHHHHHHHHHHhcccccCccHHHHHHHhcCCCCHHHHHHH
Confidence 35788899999999999999999999988877778899999999999999999876 678999999875 789999999
Q ss_pred HHHHHHhh
Q psy6534 282 YKLMYPHA 289 (309)
Q Consensus 282 ~kei~~~~ 289 (309)
.+.|.+..
T Consensus 122 E~~IL~~L 129 (269)
T 2b9r_A 122 EMKILRAL 129 (269)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHc
Confidence 99988774
No 33
>3m03_A ORC6, origin recognition complex subunit 6; helix turn helix, DNA binding protein, origin recognition CO DNA replication; HET: MES; 2.50A {Homo sapiens}
Probab=97.47 E-value=0.00042 Score=50.35 Aligned_cols=82 Identities=13% Similarity=0.141 Sum_probs=63.3
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHhhhcCcc-------CCCChHHHHHHHHHHHHHhCCCCCCHHHHHHHhCCCHHHHHH
Q psy6534 208 MSRFCSNLSLPNMVQKAATHIARKAVELDIV-------PGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQ 280 (309)
Q Consensus 208 i~~~~~~L~l~~~~~~~a~~i~~~~~~~~l~-------~Gr~P~~iaaAaiyla~~~~~~~~~~~~ia~~~~vs~~ti~~ 280 (309)
|..+|-+||.++ +.+.|.+|++.-+. .+. .-.+| ..++||+|.+|+.++.+++...+.+.+|+++..+.+
T Consensus 6 v~dLcVqfgc~e-~~~~a~~lL~~Yk~-~l~~~~~~~~D~s~P-~f~aaA~~~acr~~K~kVdK~KL~~~s~lk~~~f~~ 82 (95)
T 3m03_A 6 IRDLAVQFSCIE-AVNMASKILKSYES-SLPQTQQVDLDLSRP-LFTSAALLSACKILKLKVDKNKMVATSGVKKAIFDR 82 (95)
T ss_dssp HHHHHHHHTCGG-GHHHHHHHHHHHHT-TSCHHHHHHCCTTSH-HHHHHHHHHHHHHTTCCCCHHHHHHTTCBCHHHHHH
T ss_pred HHHHHHHhCCHH-HHHHHHHHHHHHHH-HhHHHhhcccccccc-HHHHHHHHHHHHHHccCCCHHHHHHHHCCCHHHHHH
Confidence 567788888877 67777787776443 221 12244 566688999999999999999999999999999999
Q ss_pred HHHHHHHhhccc
Q psy6534 281 SYKLMYPHASKL 292 (309)
Q Consensus 281 ~~kei~~~~~~l 292 (309)
..+.+.....++
T Consensus 83 l~~~~e~~~~~~ 94 (95)
T 3m03_A 83 LCKQLEKIGQQV 94 (95)
T ss_dssp HHHHHHHHHTTC
T ss_pred HHHHHHHHHHhc
Confidence 998887765543
No 34
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=97.43 E-value=0.00037 Score=63.73 Aligned_cols=67 Identities=13% Similarity=0.225 Sum_probs=61.3
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHhhhcCccCCCChHHHHHHHHHHHHHhCCCCCCHHHHHHHh
Q psy6534 205 GDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIA 271 (309)
Q Consensus 205 ~~~i~~~~~~L~l~~~~~~~a~~i~~~~~~~~l~~Gr~P~~iaaAaiyla~~~~~~~~~~~~ia~~~ 271 (309)
.++|.+++.+|+|+..+..+|..++++......+.++++..|++||||+||+....++++++|..++
T Consensus 42 v~wI~ev~~~l~L~~~t~~tAv~~~dRFl~~~sv~~~~~qlva~acLfLA~K~EE~p~~l~d~v~v~ 108 (358)
T 2pk2_A 42 ANLLQDMGQRLNVSQLTINTAIVYMHRFYMIQSFTRFPGNSVAPAALFLAAKVEEQPKKLEHVIKVA 108 (358)
T ss_dssp HHHHHHHHTTTTCCHHHHHHHHHHHHHHTTTSCTTTSCHHHHHHHHHHHHHHHTTCCCCHHHHHTTH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHHhhccCCCCHHHHHHHH
Confidence 4688999999999999999999999999887778899999999999999999999999999997654
No 35
>3m03_A ORC6, origin recognition complex subunit 6; helix turn helix, DNA binding protein, origin recognition CO DNA replication; HET: MES; 2.50A {Homo sapiens}
Probab=97.35 E-value=0.00092 Score=48.54 Aligned_cols=80 Identities=21% Similarity=0.210 Sum_probs=64.7
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCC------CCchhHHHHHHHHHHHHhcCCCccHHHHHHHhcccHHHHHHH
Q psy6534 114 INSMADRINLTKTIVDRANNLFKQVHDGKNLK------GRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGRC 187 (309)
Q Consensus 114 I~~i~~~L~Lp~~v~e~A~~~~~~~~~~~~~~------gr~~~~vaaAcly~acR~~~~~~tl~eia~~~~~~~~~i~~~ 187 (309)
|.++|-+||+++ +++.|.+++.++... +.. .-+....+||++|.+||.++...+-.-+.+..++++.++.+.
T Consensus 6 v~dLcVqfgc~e-~~~~a~~lL~~Yk~~-l~~~~~~~~D~s~P~f~aaA~~~acr~~K~kVdK~KL~~~s~lk~~~f~~l 83 (95)
T 3m03_A 6 IRDLAVQFSCIE-AVNMASKILKSYESS-LPQTQQVDLDLSRPLFTSAALLSACKILKLKVDKNKMVATSGVKKAIFDRL 83 (95)
T ss_dssp HHHHHHHHTCGG-GHHHHHHHHHHHHTT-SCHHHHHHCCTTSHHHHHHHHHHHHHHTTCCCCHHHHHHTTCBCHHHHHHH
T ss_pred HHHHHHHhCCHH-HHHHHHHHHHHHHHH-hHHHhhccccccccHHHHHHHHHHHHHHccCCCHHHHHHHHCCCHHHHHHH
Confidence 788999999997 888888888877532 211 224568999999999999999999999999999999998887
Q ss_pred HHHHHHHh
Q psy6534 188 FKLILKAL 195 (309)
Q Consensus 188 ~~~l~~~l 195 (309)
...+.+..
T Consensus 84 ~~~~e~~~ 91 (95)
T 3m03_A 84 CKQLEKIG 91 (95)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77766543
No 36
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A
Probab=97.33 E-value=0.0016 Score=57.16 Aligned_cols=85 Identities=13% Similarity=0.142 Sum_probs=73.8
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHhhhcCccCCCChHHHHHHHHHHHHHhCCC-CCCHHHHHHHhC--CCHHHHHHHH
Q psy6534 206 DFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSD-KRSQKEIGDIAG--VAEVTIRQSY 282 (309)
Q Consensus 206 ~~i~~~~~~L~l~~~~~~~a~~i~~~~~~~~l~~Gr~P~~iaaAaiyla~~~~~~-~~~~~~ia~~~~--vs~~ti~~~~ 282 (309)
+++.+.+..++++.++.-.|..++++.....-+..+++.-+++||+|+||+..+. +.+.++++..++ .+...|.+..
T Consensus 62 ~wl~~v~~~~~l~~~tl~lAv~~lDRfls~~~v~~~~lqlv~~acL~iAsK~EE~~p~~~~~~~~~~~~~~~~~eI~~mE 141 (271)
T 2w96_A 62 TWMLEVCEEQKCEEEVFPLAMNYLDRFLSLEPVKKSRLQLLGATCMFVASKMKETIPLTAEKLCIYTDNSIRPEELLQME 141 (271)
T ss_dssp HHHHHHHHHTTCCTTHHHHHHHHHHHHHTTSCCCTTTHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTTTSSCHHHHHHHH
T ss_pred HHHHHHHHHHCCchhHHHHHHHHHHHhCCcCCcCHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHhcCCCCHHHHHHHH
Confidence 4677788899999989999999999888766677889999999999999999887 889999998864 7899999999
Q ss_pred HHHHHhhc
Q psy6534 283 KLMYPHAS 290 (309)
Q Consensus 283 kei~~~~~ 290 (309)
+.|.+..+
T Consensus 142 ~~IL~~L~ 149 (271)
T 2w96_A 142 LLLVNKLK 149 (271)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHCC
Confidence 99887743
No 37
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ...
Probab=97.28 E-value=0.0013 Score=57.29 Aligned_cols=85 Identities=15% Similarity=0.060 Sum_probs=74.4
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHhhhcCccCCCChHHHHHHHHHHHHHhCCC-CCCHHHHHHHhC--CCHHHHHHH
Q psy6534 205 GDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSD-KRSQKEIGDIAG--VAEVTIRQS 281 (309)
Q Consensus 205 ~~~i~~~~~~L~l~~~~~~~a~~i~~~~~~~~l~~Gr~P~~iaaAaiyla~~~~~~-~~~~~~ia~~~~--vs~~ti~~~ 281 (309)
-+++..++..++++.++.-.|..++++.....-+..+++.-+++||+|+||+..+. +.+.+|+...++ .+...|.+.
T Consensus 43 vdwl~~v~~~~~l~~~tl~lAv~~lDRfls~~~v~~~~lqlv~~acl~iA~K~ee~~~~~~~d~~~i~~~~~~~~~i~~m 122 (260)
T 2cch_B 43 VDWLVEVGEEYKLQNETLHLAVNYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRM 122 (260)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTTSSSCHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHhccCCCCHHHHhHHHHHHHHHHHHhcccCCCCHHHHHHHHcCCcCHHHHHHH
Confidence 35788899999999999999999999888766666778999999999999999987 789999998874 889999999
Q ss_pred HHHHHHhh
Q psy6534 282 YKLMYPHA 289 (309)
Q Consensus 282 ~kei~~~~ 289 (309)
.+.|.+..
T Consensus 123 E~~iL~~L 130 (260)
T 2cch_B 123 EHLVLKVL 130 (260)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHc
Confidence 99988764
No 38
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1
Probab=97.11 E-value=0.0027 Score=55.23 Aligned_cols=86 Identities=16% Similarity=0.165 Sum_probs=74.6
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHhhhcCccCCCChHHHHHHHHHHHHHhCCC-CCCHHHHHHHhC--CCHHHHHHH
Q psy6534 205 GDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSD-KRSQKEIGDIAG--VAEVTIRQS 281 (309)
Q Consensus 205 ~~~i~~~~~~L~l~~~~~~~a~~i~~~~~~~~l~~Gr~P~~iaaAaiyla~~~~~~-~~~~~~ia~~~~--vs~~ti~~~ 281 (309)
-+++..++.+++++.++.-.|..++++......+.++++.-+++||+|+||+.... +.+.++++..++ .+...|.+.
T Consensus 55 vdwl~ev~~~~~l~~etl~lAv~~~DRfls~~~v~~~~lqLv~~acl~iA~K~eE~~~p~~~d~~~~~~~~~~~~~i~~m 134 (257)
T 1g3n_C 55 GTWMFSVCQEYNLEPNVVALALNLLDRLLLIKQVSKEHFQKTGSACLLVASKLRSLTPISTSSLCYAAADSFSRQELIDQ 134 (257)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTTTCSCHHHHHHH
T ss_pred HHHHHHHHHHhCCCccHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHccccCCCHHHHHHHHCCCCCHHHHHHH
Confidence 35778899999999999999999999998877778888999999999999998765 788999998865 788899998
Q ss_pred HHHHHHhhc
Q psy6534 282 YKLMYPHAS 290 (309)
Q Consensus 282 ~kei~~~~~ 290 (309)
.+.|.+..+
T Consensus 135 E~~iL~~L~ 143 (257)
T 1g3n_C 135 EKELLEKLA 143 (257)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHCC
Confidence 888887643
No 39
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=97.00 E-value=0.0042 Score=54.80 Aligned_cols=85 Identities=8% Similarity=0.089 Sum_probs=73.2
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHhhhc-CccCCCChHHHHHHHHHHHHHhCCC-CCCHHHHHHHhC--CCHHHHHHH
Q psy6534 206 DFMSRFCSNLSLPNMVQKAATHIARKAVEL-DIVPGRSPISVAAAAIYMASQASSD-KRSQKEIGDIAG--VAEVTIRQS 281 (309)
Q Consensus 206 ~~i~~~~~~L~l~~~~~~~a~~i~~~~~~~-~l~~Gr~P~~iaaAaiyla~~~~~~-~~~~~~ia~~~~--vs~~ti~~~ 281 (309)
+++...+.+++++.++.-.|..++++.... ..+.++.+.-+++||+|+||+.... +.+.++++..++ .+...|.+.
T Consensus 55 ~wl~~v~~~~~l~~~tl~lAv~~lDRfls~~~~v~~~~lqlv~~acL~iA~K~eE~~~p~l~~~~~i~~~~~~~~ei~~m 134 (283)
T 1w98_B 55 DWLMEVCEVYKLHRETFYLAQDFFDRYMATQENVVKTLLQLIGISSLFIAAKLEEIYPPKLHQFAYVTDGACSGDEILTM 134 (283)
T ss_dssp HHHHHHHHHTTCBHHHHHHHHHHHHHHHHHCCCCCGGGHHHHHHHHHHHHHHHHCSSCCCHHHHHHTTTTSSCHHHHHHH
T ss_pred HHHHHHHHHhCCCccHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHcCCCCHHHHHHH
Confidence 567788999999999999999999998875 4667899999999999999999876 778999998764 788999999
Q ss_pred HHHHHHhhc
Q psy6534 282 YKLMYPHAS 290 (309)
Q Consensus 282 ~kei~~~~~ 290 (309)
.+.|.+..+
T Consensus 135 E~~IL~~L~ 143 (283)
T 1w98_B 135 ELMIMKALK 143 (283)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHcC
Confidence 998887653
No 40
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A
Probab=96.76 E-value=0.0056 Score=53.05 Aligned_cols=86 Identities=10% Similarity=0.139 Sum_probs=72.7
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHhhhcCccCCCChHHHHHHHHHHHHHhCC-CCCCHHHHHHHhC--CCHHHHHHH
Q psy6534 205 GDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASS-DKRSQKEIGDIAG--VAEVTIRQS 281 (309)
Q Consensus 205 ~~~i~~~~~~L~l~~~~~~~a~~i~~~~~~~~l~~Gr~P~~iaaAaiyla~~~~~-~~~~~~~ia~~~~--vs~~ti~~~ 281 (309)
-+++..++..++++.++.-.|..++++......+.++++.-+++||+|+|++... .+.+.++++..++ .+...|.+.
T Consensus 56 vdwl~~v~~~~~l~~etl~lAv~~~DRfls~~~v~~~~lqLv~~acl~iA~K~eE~~~p~~~d~~~~~~~~~~~~~i~~m 135 (254)
T 2f2c_A 56 LTWMHLLCESFELDKSVFPLSVSILDRYLCKKQGTKKTLQKIGAACVLIGSKIRTVKPMTVSKLTYLSCDCFTNLELINQ 135 (254)
T ss_dssp HHHHHHHHHHTTCCTTHHHHHHHHHHHHTTTSCCCTTTHHHHHHHHHHHHHHHHCSSCCCHHHHSTTC---CCHHHHHHH
T ss_pred HHHHHHHHHHHCCCchHHHHHHHHHHHHHccCCcCHHHccHHHHHHHHHHHHhcccCCCCHHHHHHHhCCCCCHHHHHHH
Confidence 3577889999999999999999999999887778889999999999999999976 5788999876643 688889888
Q ss_pred HHHHHHhhc
Q psy6534 282 YKLMYPHAS 290 (309)
Q Consensus 282 ~kei~~~~~ 290 (309)
.+.|.+..+
T Consensus 136 E~~IL~~L~ 144 (254)
T 2f2c_A 136 EKDILEALK 144 (254)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHCC
Confidence 888877643
No 41
>1qxf_A GR2, 30S ribosomal protein S27E; structural genomics, beta sheet, PSI, protein structure initiative; NMR {Archaeoglobus fulgidus} SCOP: g.41.8.4
Probab=96.76 E-value=0.00055 Score=45.72 Aligned_cols=31 Identities=26% Similarity=0.385 Sum_probs=28.5
Q ss_pred ccCCCCCCCCeeeeCCCCceecCCCCccccC
Q psy6534 6 VCCYEHPDAPLIEDYRAGDQICSECGLVVGD 36 (309)
Q Consensus 6 ~~Cp~C~~~~~v~D~~~G~~vC~~CG~V~~e 36 (309)
.+||.|+...+|+++.+-.+.|..||.++.+
T Consensus 8 VKCp~C~niq~VFShA~tvV~C~~Cg~~L~~ 38 (66)
T 1qxf_A 8 VKCPDCEHEQVIFDHPSTIVKCIICGRTVAE 38 (66)
T ss_dssp EECTTTCCEEEEESSCSSCEECSSSCCEEEE
T ss_pred EECCCCCCceEEEecCceEEEcccCCCEEee
Confidence 5799999999999999999999999999943
No 42
>3j20_W 30S ribosomal protein S27E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=96.60 E-value=0.00089 Score=44.40 Aligned_cols=31 Identities=19% Similarity=0.381 Sum_probs=28.5
Q ss_pred ccCCCCCCCCeeeeCCCCceecCCCCccccC
Q psy6534 6 VCCYEHPDAPLIEDYRAGDQICSECGLVVGD 36 (309)
Q Consensus 6 ~~Cp~C~~~~~v~D~~~G~~vC~~CG~V~~e 36 (309)
.+||.|+...+|+++.+-.+.|..||.++.+
T Consensus 16 VkCp~C~~~q~VFSha~t~V~C~~Cgt~L~~ 46 (63)
T 3j20_W 16 VKCIDCGNEQIVFSHPATKVRCLICGATLVE 46 (63)
T ss_dssp EECSSSCCEEEEESSCSSCEECSSSCCEEEE
T ss_pred EECCCCCCeeEEEecCCeEEEccCcCCEEec
Confidence 5799999999999999999999999999953
No 43
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=96.39 E-value=0.0019 Score=43.91 Aligned_cols=30 Identities=13% Similarity=0.089 Sum_probs=25.7
Q ss_pred CcccCCCCCCCCeeeeCCCCceecCCCCccc
Q psy6534 4 NKVCCYEHPDAPLIEDYRAGDQICSECGLVV 34 (309)
Q Consensus 4 ~~~~Cp~C~~~~~v~D~~~G~~vC~~CG~V~ 34 (309)
+.+.||.|++ .+..|..+|.++|..||...
T Consensus 9 eiL~CP~ck~-~L~~~~~~g~LvC~~c~~~Y 38 (67)
T 2jny_A 9 EVLACPKDKG-PLRYLESEQLLVNERLNLAY 38 (67)
T ss_dssp CCCBCTTTCC-BCEEETTTTEEEETTTTEEE
T ss_pred HHhCCCCCCC-cCeEeCCCCEEEcCCCCccc
Confidence 4578999987 57888889999999999876
No 44
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=96.38 E-value=0.002 Score=44.18 Aligned_cols=30 Identities=13% Similarity=0.207 Sum_probs=25.8
Q ss_pred CcccCCCCCCCCeeeeCCCCceecCCCCccc
Q psy6534 4 NKVCCYEHPDAPLIEDYRAGDQICSECGLVV 34 (309)
Q Consensus 4 ~~~~Cp~C~~~~~v~D~~~G~~vC~~CG~V~ 34 (309)
+.+.||.|++ .+..|..+|.++|.+||.+.
T Consensus 7 ~iL~CP~ck~-~L~~~~~~~~LiC~~cg~~Y 36 (70)
T 2js4_A 7 DILVCPVCKG-RLEFQRAQAELVCNADRLAF 36 (70)
T ss_dssp CCCBCTTTCC-BEEEETTTTEEEETTTTEEE
T ss_pred hheECCCCCC-cCEEeCCCCEEEcCCCCcee
Confidence 4578999987 58888889999999999876
No 45
>2xzm_6 RPS27E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_6
Probab=96.33 E-value=0.0015 Score=45.54 Aligned_cols=31 Identities=19% Similarity=0.453 Sum_probs=28.4
Q ss_pred ccCCCCCCCCeeeeCCCCceecCCCCccccC
Q psy6534 6 VCCYEHPDAPLIEDYRAGDQICSECGLVVGD 36 (309)
Q Consensus 6 ~~Cp~C~~~~~v~D~~~G~~vC~~CG~V~~e 36 (309)
..||.|+...+|+++.+-.+.|..||.|+-+
T Consensus 33 VkCp~C~n~q~VFShA~t~V~C~~Cg~~L~~ 63 (81)
T 2xzm_6 33 VKCAQCQNIQMIFSNAQSTIICEKCSAILCK 63 (81)
T ss_dssp EECSSSCCEEEEETTCSSCEECSSSCCEEEE
T ss_pred eECCCCCCeeEEEecCccEEEccCCCCEEee
Confidence 4799999999999999999999999999953
No 46
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=96.32 E-value=0.002 Score=44.09 Aligned_cols=30 Identities=20% Similarity=0.269 Sum_probs=25.3
Q ss_pred CcccCCCCCCCCeeeeCCCCceecCCCCccc
Q psy6534 4 NKVCCYEHPDAPLIEDYRAGDQICSECGLVV 34 (309)
Q Consensus 4 ~~~~Cp~C~~~~~v~D~~~G~~vC~~CG~V~ 34 (309)
+.+.||.|++ .+..+..+|.++|.+||.+.
T Consensus 7 eiL~CP~ck~-~L~~~~~~~~LiC~~cg~~Y 36 (69)
T 2pk7_A 7 DILACPICKG-PLKLSADKTELISKGAGLAY 36 (69)
T ss_dssp GTCCCTTTCC-CCEECTTSSEEEETTTTEEE
T ss_pred hheeCCCCCC-cCeEeCCCCEEEcCCCCcEe
Confidence 3578999986 47788889999999999876
No 47
>3u5c_b RP61, YS20, 40S ribosomal protein S27-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_X 3u5g_b
Probab=96.32 E-value=0.0017 Score=45.33 Aligned_cols=31 Identities=13% Similarity=0.253 Sum_probs=28.5
Q ss_pred ccCCCCCCCCeeeeCCCCceecCCCCccccC
Q psy6534 6 VCCYEHPDAPLIEDYRAGDQICSECGLVVGD 36 (309)
Q Consensus 6 ~~Cp~C~~~~~v~D~~~G~~vC~~CG~V~~e 36 (309)
.+||.|+...+|+.+.+-.+.|..||.|+-+
T Consensus 35 VkCp~C~~~q~VFSha~t~V~C~~Cg~~L~~ 65 (82)
T 3u5c_b 35 VKCPGCLNITTVFSHAQTAVTCESCSTILCT 65 (82)
T ss_dssp EECTTSCSCEEEESBCSSCCCCSSSCCCCEE
T ss_pred EECCCCCCeeEEEecCCeEEEccccCCEEec
Confidence 4799999999999999999999999999953
No 48
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=96.26 E-value=0.0024 Score=43.56 Aligned_cols=30 Identities=10% Similarity=0.064 Sum_probs=25.6
Q ss_pred CcccCCCCCCCCeeeeCCCCceecCCCCccc
Q psy6534 4 NKVCCYEHPDAPLIEDYRAGDQICSECGLVV 34 (309)
Q Consensus 4 ~~~~Cp~C~~~~~v~D~~~G~~vC~~CG~V~ 34 (309)
+.+.||.|++ .+..+...|.++|.+||.+.
T Consensus 7 ~iL~CP~ck~-~L~~~~~~~~LiC~~cg~~Y 36 (68)
T 2jr6_A 7 DILVCPVTKG-RLEYHQDKQELWSRQAKLAY 36 (68)
T ss_dssp CCCBCSSSCC-BCEEETTTTEEEETTTTEEE
T ss_pred hheECCCCCC-cCeEeCCCCEEEcCCCCcEe
Confidence 4578999986 57788889999999999876
No 49
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}
Probab=96.25 E-value=0.022 Score=50.72 Aligned_cols=85 Identities=12% Similarity=0.065 Sum_probs=72.3
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHhhhcCccCCCChHHHHHHHHHHHHHhCC-CCCCHHHHHHHhC--CCHHHHHHH
Q psy6534 205 GDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASS-DKRSQKEIGDIAG--VAEVTIRQS 281 (309)
Q Consensus 205 ~~~i~~~~~~L~l~~~~~~~a~~i~~~~~~~~l~~Gr~P~~iaaAaiyla~~~~~-~~~~~~~ia~~~~--vs~~ti~~~ 281 (309)
-+++..++..++++.++.-.|..++++......+....+.-+++||+|+|++... .+.+.++++..++ .+...|.+.
T Consensus 75 vdwl~ev~~~~~l~~~t~~lAv~~lDRfls~~~v~~~~lqLv~~tcL~lAsK~eE~~p~~~~~l~~~~~~~~~~~~i~~m 154 (306)
T 3g33_B 75 AYWMLEVCEEQRCEEEVFPLAMNYLDRYLSCVPTRKAQLQLLGAVCMLLASKLRETTPLTIEKLCIYTDHAVSPRQLRDW 154 (306)
T ss_dssp HHHHHHHHHHTTCCTTHHHHHHHHHHHHHHHCCCCGGGHHHHHHHHHHHHHHHHCSSCCCTTHHHHHTTTSSCHHHHHHH
T ss_pred HHHHHHHHHHhCCcHhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHhccCccHHHHHHH
Confidence 3578889999999999999999999998877777888999999999999999855 4668888988766 678888888
Q ss_pred HHHHHHhh
Q psy6534 282 YKLMYPHA 289 (309)
Q Consensus 282 ~kei~~~~ 289 (309)
-+.|.+..
T Consensus 155 E~~IL~~L 162 (306)
T 3g33_B 155 EVLVLGKL 162 (306)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHc
Confidence 88887664
No 50
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=96.22 E-value=0.0019 Score=45.86 Aligned_cols=30 Identities=17% Similarity=0.298 Sum_probs=26.0
Q ss_pred cccCCCCCCCCeeeeCCCCceecCCCCcccc
Q psy6534 5 KVCCYEHPDAPLIEDYRAGDQICSECGLVVG 35 (309)
Q Consensus 5 ~~~Cp~C~~~~~v~D~~~G~~vC~~CG~V~~ 35 (309)
...||.||. +.+.++.+|...|..||.++.
T Consensus 27 ~y~Cp~CG~-~~v~r~atGiW~C~~Cg~~~a 56 (83)
T 1vq8_Z 27 DHACPNCGE-DRVDRQGTGIWQCSYCDYKFT 56 (83)
T ss_dssp CEECSSSCC-EEEEEEETTEEEETTTCCEEE
T ss_pred cCcCCCCCC-cceeccCCCeEECCCCCCEec
Confidence 457999987 578899999999999999863
No 51
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=96.17 E-value=0.0027 Score=43.31 Aligned_cols=29 Identities=24% Similarity=0.372 Sum_probs=25.0
Q ss_pred cccCCCCCCCCeeeeCCCCceecCCCCccc
Q psy6534 5 KVCCYEHPDAPLIEDYRAGDQICSECGLVV 34 (309)
Q Consensus 5 ~~~Cp~C~~~~~v~D~~~G~~vC~~CG~V~ 34 (309)
.+.||.|++ .+..+..+|.++|.+||.+.
T Consensus 8 iL~CP~ck~-~L~~~~~~~~LiC~~cg~~Y 36 (68)
T 2hf1_A 8 ILVCPLCKG-PLVFDKSKDELICKGDRLAF 36 (68)
T ss_dssp ECBCTTTCC-BCEEETTTTEEEETTTTEEE
T ss_pred heECCCCCC-cCeEeCCCCEEEcCCCCcEe
Confidence 468999986 57788889999999999876
No 52
>2r7g_A PP110, retinoblastoma-associated protein, P105-RB, RB; retinoblastoma protein, E2F displacement, transcription repressor; 1.67A {Homo sapiens} SCOP: a.74.1.3 a.74.1.3 PDB: 1n4m_A 3pom_A 1gh6_B 1gux_A 1o9k_A 1ad6_A 1gux_B 1o9k_B
Probab=96.13 E-value=0.014 Score=52.56 Aligned_cols=70 Identities=19% Similarity=0.277 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHHhc--CCCCCCCchhHHHHHHHHHHHHhcCCCccHHHHHHHh
Q psy6534 108 LNAIREINSMADRINLTK-TIVDRANNLFKQVHD--GKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVS 177 (309)
Q Consensus 108 ~~~~~~I~~i~~~L~Lp~-~v~e~A~~~~~~~~~--~~~~~gr~~~~vaaAcly~acR~~~~~~tl~eia~~~ 177 (309)
.-|..+|..+|..|+++. .+.+.+..+|..+.. ..++++|....++-+|+|+.||..+..+++++|....
T Consensus 216 ~La~~Rl~~LC~~L~~~~~~~~~~iWt~fe~~l~~~t~L~~dRHLDQiilCaiY~i~Kv~~~~~tF~~Ii~~Y 288 (347)
T 2r7g_A 216 RLAYLRLNTLCERLLSEHPELEHIIWTLFQHTLQNEYELMRDRHLDQIMMCSMYGICKVKNIDLKFKIIVTAY 288 (347)
T ss_dssp HHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCGGGGTTSCHHHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhChHhhcCCcHHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence 446778999999999875 578888888888764 4688999999999999999999999999999998765
No 53
>4ell_A Retinoblastoma-associated protein; cyclin fold, tumor suppressor, cell cycle; 1.98A {Homo sapiens}
Probab=96.13 E-value=0.015 Score=53.57 Aligned_cols=70 Identities=19% Similarity=0.277 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHHhc--CCCCCCCchhHHHHHHHHHHHHhcCCCccHHHHHHHh
Q psy6534 108 LNAIREINSMADRINLTK-TIVDRANNLFKQVHD--GKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVS 177 (309)
Q Consensus 108 ~~~~~~I~~i~~~L~Lp~-~v~e~A~~~~~~~~~--~~~~~gr~~~~vaaAcly~acR~~~~~~tl~eia~~~ 177 (309)
.-|..+|+.+|.+|+++. ++.+....+|..... ..++++|..+.++-+|+|+.||..+..++++||....
T Consensus 280 ~LAa~Rl~~LC~~L~~~~~~l~~~IWt~fe~~l~~~teLm~dRHLDQiiLCsiY~i~Kv~~~~~tFk~Ii~~Y 352 (411)
T 4ell_A 280 RLAYLRLNTLCERLLSEHPELEHIIWTLFQHTLQNEYELMRDRHLDQIMMCSMYGICKVKNIDLKFKIIVTAY 352 (411)
T ss_dssp HHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHCGGGGTTSCHHHHHHHHHHHHHHTTTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhhhHhhccccHHHHHHHHHHHHHhhccCCCCHHHHHHHH
Confidence 347788999999999874 678888888888754 4688999999999999999999999999999998765
No 54
>3iz6_X 40S ribosomal protein S27 (S27E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=96.12 E-value=0.0022 Score=45.16 Aligned_cols=31 Identities=16% Similarity=0.258 Sum_probs=28.5
Q ss_pred ccCCCCCCCCeeeeCCCCceecCCCCccccC
Q psy6534 6 VCCYEHPDAPLIEDYRAGDQICSECGLVVGD 36 (309)
Q Consensus 6 ~~Cp~C~~~~~v~D~~~G~~vC~~CG~V~~e 36 (309)
.+||.|+...+|+.+.+-.+.|..||.|+-+
T Consensus 37 VkCp~C~~~~~VFShA~t~V~C~~CgtvL~~ 67 (86)
T 3iz6_X 37 VKCQGCFNITTVFSHSQTVVVCPGCQTVLCQ 67 (86)
T ss_dssp EECTTTCCEEEEETTCSSCCCCSSSCCCCSC
T ss_pred EECCCCCCeeEEEecCCcEEEccCCCCEeec
Confidence 5799999999999999999999999999953
No 55
>2akl_A PHNA-like protein PA0128; two domains, Zn binding protein, beta-strand protein, structural genomics, PSI; NMR {Pseudomonas aeruginosa PAO1} SCOP: b.34.11.2 g.41.3.5
Probab=95.85 E-value=0.016 Score=44.00 Aligned_cols=29 Identities=21% Similarity=0.285 Sum_probs=22.7
Q ss_pred CcccCCCCCCCCeeeeCCCCceecCCCCccc
Q psy6534 4 NKVCCYEHPDAPLIEDYRAGDQICSECGLVV 34 (309)
Q Consensus 4 ~~~~Cp~C~~~~~v~D~~~G~~vC~~CG~V~ 34 (309)
.-..||.|++...+.| ...+||.+||.--
T Consensus 26 ~lP~CP~C~seytYeD--g~l~vCPeC~hEW 54 (138)
T 2akl_A 26 TLPPCPQCNSEYTYED--GALLVCPECAHEW 54 (138)
T ss_dssp CSCCCTTTCCCCCEEC--SSSEEETTTTEEE
T ss_pred cCCCCCCCCCcceEec--CCeEECCcccccc
Confidence 3458999998877776 4589999999643
No 56
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=95.80 E-value=0.0066 Score=38.67 Aligned_cols=28 Identities=18% Similarity=0.412 Sum_probs=22.6
Q ss_pred ccCCCCCCCCeeeeCCCCceecCCCCccc
Q psy6534 6 VCCYEHPDAPLIEDYRAGDQICSECGLVV 34 (309)
Q Consensus 6 ~~Cp~C~~~~~v~D~~~G~~vC~~CG~V~ 34 (309)
..||.||+..+..++ .+..+|..||++.
T Consensus 20 k~CP~CG~~~fm~~~-~~R~~C~kCG~t~ 47 (50)
T 3j20_Y 20 KFCPRCGPGVFMADH-GDRWACGKCGYTE 47 (50)
T ss_dssp EECSSSCSSCEEEEC-SSEEECSSSCCEE
T ss_pred ccCCCCCCceEEecC-CCeEECCCCCCEE
Confidence 369999987666665 5799999999874
No 57
>4elj_A Retinoblastoma-associated protein; cyclin fold, tumor suppressor protein, phosphorylation, cell; HET: TPO; 2.70A {Homo sapiens}
Probab=95.73 E-value=0.013 Score=57.11 Aligned_cols=70 Identities=19% Similarity=0.271 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHhc--CCCCCCCchhHHHHHHHHHHHHhcCCCccHHHHHHHh
Q psy6534 108 LNAIREINSMADRINLT-KTIVDRANNLFKQVHD--GKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVS 177 (309)
Q Consensus 108 ~~~~~~I~~i~~~L~Lp-~~v~e~A~~~~~~~~~--~~~~~gr~~~~vaaAcly~acR~~~~~~tl~eia~~~ 177 (309)
.-|..+|+.+|..|+++ +.+.+.+..+|..+.. ..++++|....++.+|+|..||..+..+++++|....
T Consensus 525 ~LAa~Rl~~LC~~L~~~~~~i~~~IWt~fe~~l~~~t~L~~dRHLDQiilCsiY~icKv~~~~ltFk~Ii~~Y 597 (656)
T 4elj_A 525 RLAYLRLNTLCERLLSEHPELEHIIWTLFQHTLQNEYELMRDRHLDQIMMCSMYGICKVKNIDLKFKIIVTAY 597 (656)
T ss_dssp HHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHHHCGGGSTTSCHHHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhhHHHHhcchHHHHHHHHHHHHHHhccCCcCHHHHHHHH
Confidence 44778999999999887 4688899998888764 3688999999999999999999999999999998764
No 58
>2qdj_A Retinoblastoma-associated protein; cyclin fold, cyclin wedge, antitumor protein; 2.00A {Homo sapiens}
Probab=95.47 E-value=0.063 Score=47.54 Aligned_cols=71 Identities=15% Similarity=0.310 Sum_probs=53.4
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcC-C---CCCCCchhHHHHHHHHHHHHhc-CCCccHHHHHHHhcccHHHH
Q psy6534 113 EINSMADRINLTKTIVDRANNLFKQVHDG-K---NLKGRSNDAIASACLYIACRQE-GVPRTFKEICAVSKISKKEI 184 (309)
Q Consensus 113 ~I~~i~~~L~Lp~~v~e~A~~~~~~~~~~-~---~~~gr~~~~vaaAcly~acR~~-~~~~tl~eia~~~~~~~~~i 184 (309)
....+|..|++++.+.++|..+|+.+... + ...|. .+..-.||||+||... +.+.||-+|...++++..++
T Consensus 5 rF~~lC~~Lnld~~~~~~Aw~~~~~~~~~~~~~~~~~~~-~~~~w~acLY~a~~~~~~n~vsLt~LLr~~~lsi~~F 80 (304)
T 2qdj_A 5 DFTALCQKLKIPDHVRERAWLTWEKVSSVDGVLGGYIQK-KKELWGICIFIAAVDLDEMSFTFTELQKNIEISVHKF 80 (304)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHHC----------C-HHHHHHHHHHHHHHHHTCCCSCHHHHHHHHTCCHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhccccccCCCccc-hHHHHHHhHHHHhhccCCCcCcHHHHHHHcCCCHHHH
Confidence 45678999999999999999999998774 2 23333 3444556699999754 56799999999999987775
No 59
>2r7g_A PP110, retinoblastoma-associated protein, P105-RB, RB; retinoblastoma protein, E2F displacement, transcription repressor; 1.67A {Homo sapiens} SCOP: a.74.1.3 a.74.1.3 PDB: 1n4m_A 3pom_A 1gh6_B 1gux_A 1o9k_A 1ad6_A 1gux_B 1o9k_B
Probab=94.81 E-value=0.13 Score=46.33 Aligned_cols=123 Identities=14% Similarity=0.148 Sum_probs=86.6
Q ss_pred hhHHHHHHHHHHHHhc----------CCCccHHHHHHHhcccHHHHHHHHHHHHHH-----------hcc----------
Q psy6534 149 NDAIASACLYIACRQE----------GVPRTFKEICAVSKISKKEIGRCFKLILKA-----------LET---------- 197 (309)
Q Consensus 149 ~~~vaaAcly~acR~~----------~~~~tl~eia~~~~~~~~~i~~~~~~l~~~-----------l~~---------- 197 (309)
...+.|+|+=++..-. ....++--|.+.++++.+++.+....+.+. |+.
T Consensus 104 h~sLlACc~EiVl~ay~~~~~~~~~~~~~~~FP~il~~~~i~afdf~KVIE~fVr~e~~LprelvkHL~~iEe~iLesla 183 (347)
T 2r7g_A 104 HMSLLACALEVVMATYSRSTSQNLDSGTDLSFPWILNVLNLKAFDFYKVIESFIKAEGNLTREMIKHLERCEHRIMESLA 183 (347)
T ss_dssp HHHHHHHHHHHHHHHHHHHC------CCCCCTTHHHHHHTCCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTGG
T ss_pred HHHHHHHHHHHHHHHhcccccccccccccCCCcHHHHhcCCChHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHH
Confidence 3577778776655433 235677789999999999998887665553 110
Q ss_pred ---cCCC--------C----C-------------hHHHHHHHHhhCCCCH-HHHHHHHHHHHHhh--hcCccCCCChHHH
Q psy6534 198 ---SVDL--------I----T-------------TGDFMSRFCSNLSLPN-MVQKAATHIARKAV--ELDIVPGRSPISV 246 (309)
Q Consensus 198 ---~~~~--------~----~-------------p~~~i~~~~~~L~l~~-~~~~~a~~i~~~~~--~~~l~~Gr~P~~i 246 (309)
+.+. . + ...-+..+|+.|+++. ++.+.++.+++.+. +..++.+|+..-|
T Consensus 184 W~~~S~L~~~l~~~~~~~g~~~sl~~f~rKvy~La~~Rl~~LC~~L~~~~~~~~~~iWt~fe~~l~~~t~L~~dRHLDQi 263 (347)
T 2r7g_A 184 WLSDSPLFDLIKQSKDREGKSTSLSLFYKKVYRLAYLRLNTLCERLLSEHPELEHIIWTLFQHTLQNEYELMRDRHLDQI 263 (347)
T ss_dssp GSTTCTHHHHHHHHHC---CCHHHHHHHHHHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCGGGGTTSCHHHH
T ss_pred hccCCHHHHHHHhccccCCcccHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhChHhhcCCcHHHH
Confidence 0000 0 0 1223566788887664 46667777777654 3579999999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHh
Q psy6534 247 AAAAIYMASQASSDKRSQKEIGDIA 271 (309)
Q Consensus 247 aaAaiyla~~~~~~~~~~~~ia~~~ 271 (309)
...|||..|+..+..++.++|-..-
T Consensus 264 ilCaiY~i~Kv~~~~~tF~~Ii~~Y 288 (347)
T 2r7g_A 264 MMCSMYGICKVKNIDLKFKIIVTAY 288 (347)
T ss_dssp HHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHH
Confidence 9999999999999999999997753
No 60
>2k4x_A 30S ribosomal protein S27AE; metal-binding, ribonucleoprotein, zinc, zinc-finger, structural genomics, PSI-2; NMR {Thermoplasma acidophilum} SCOP: g.41.8.8
Probab=93.84 E-value=0.058 Score=34.98 Aligned_cols=28 Identities=18% Similarity=0.431 Sum_probs=22.0
Q ss_pred cccCCCCCCCCeeeeCCCCceecCCCCcc
Q psy6534 5 KVCCYEHPDAPLIEDYRAGDQICSECGLV 33 (309)
Q Consensus 5 ~~~Cp~C~~~~~v~D~~~G~~vC~~CG~V 33 (309)
...||.||+.-++..+ .+...|..||+.
T Consensus 18 ~~fCPkCG~~~~ma~~-~dr~~C~kCgyt 45 (55)
T 2k4x_A 18 HRFCPRCGPGVFLAEH-ADRYSCGRCGYT 45 (55)
T ss_dssp SCCCTTTTTTCCCEEC-SSEEECTTTCCC
T ss_pred cccCcCCCCceeEecc-CCEEECCCCCCE
Confidence 4579999986655543 579999999987
No 61
>1f5q_B Gamma herpesvirus cyclin; herpesviral cyclin, cyclin dependent kinase. protein/protein complex, transferase; 2.50A {Murid herpesvirus 4} SCOP: a.74.1.1 a.74.1.1
Probab=93.04 E-value=0.76 Score=39.47 Aligned_cols=84 Identities=14% Similarity=0.093 Sum_probs=66.8
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHhhhcCccCCCChHHHHHHHHHHHHHhCCC-CCCHHHHHHHhC--CCHHHHHHH
Q psy6534 205 GDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSD-KRSQKEIGDIAG--VAEVTIRQS 281 (309)
Q Consensus 205 ~~~i~~~~~~L~l~~~~~~~a~~i~~~~~~~~l~~Gr~P~~iaaAaiyla~~~~~~-~~~~~~ia~~~~--vs~~ti~~~ 281 (309)
-+++..++.++++..++.-.|..++++.....-+...+..-++++|+++|++.... +.+.++++..++ .+...|.+-
T Consensus 53 vdWl~ev~~~~~l~~eT~~lAv~~lDRfLs~~~v~~~~lqLvg~tcl~iAsK~eE~~p~~~~~l~~~~~~~yt~~~i~~m 132 (252)
T 1f5q_B 53 TTWMFCVCKDLRQDNNVFPLAVALLDELFLSTRIDRENYQSTAAVALHIAGKVRAYMPIKATQLAYLCGGATTADKLLTL 132 (252)
T ss_dssp HHHHHHHHHHTTCCTTHHHHHHHHHHHHHHHSCCCGGGHHHHHHHHHHHHHHHHCSSCCCHHHHHHHHCTTCCHHHHHHH
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhCCCCCHHHHHHH
Confidence 35777899999999999999999999887666566678889999999999998764 678888887654 566777766
Q ss_pred HHHHHHh
Q psy6534 282 YKLMYPH 288 (309)
Q Consensus 282 ~kei~~~ 288 (309)
=+.|...
T Consensus 133 E~~IL~~ 139 (252)
T 1f5q_B 133 EVKSLDT 139 (252)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6666655
No 62
>4elj_A Retinoblastoma-associated protein; cyclin fold, tumor suppressor protein, phosphorylation, cell; HET: TPO; 2.70A {Homo sapiens}
Probab=92.99 E-value=0.45 Score=46.34 Aligned_cols=71 Identities=13% Similarity=0.252 Sum_probs=55.3
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhc-C----CCCCCCchhHHHHHHHHHHHHhcCCCccHHHHHHHhcccHHHH
Q psy6534 113 EINSMADRINLTKTIVDRANNLFKQVHD-G----KNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEI 184 (309)
Q Consensus 113 ~I~~i~~~L~Lp~~v~e~A~~~~~~~~~-~----~~~~gr~~~~vaaAcly~acR~~~~~~tl~eia~~~~~~~~~i 184 (309)
....+|..|++.+.+.++|...|..+.. . ..+.|. .....|+.+|.||+.+|...||-.|...++++..++
T Consensus 7 ~f~~lC~~Ln~d~~~~~~Aw~~~~~~~~~~~~l~~tleg~-~~~W~aC~ly~~~~~~gn~vsLt~lLr~~~lsl~~F 82 (656)
T 4elj_A 7 DFTALCQKLKIPDHVRERAWLTWEKVSSVDGVLGGYIQKK-KELWGICIFIAAVDLDEMSFTFTELQKNIEISVHKF 82 (656)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHHHHCSCC-----CC-HHHHHHHHHHHHHHTTCCCSCHHHHHHHHTCCHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHhccccccCCcccc-hHHhhhhhheeeeeccCCeeeHHHHHHHhcCCHHHH
Confidence 4678999999999999999999999974 2 223444 445555668888888999999999999999887664
No 63
>3j21_i 50S ribosomal protein L37AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=92.86 E-value=0.061 Score=37.79 Aligned_cols=31 Identities=19% Similarity=0.378 Sum_probs=25.3
Q ss_pred cccCCCCCCCCeeeeCCCCceecCCCCccccC
Q psy6534 5 KVCCYEHPDAPLIEDYRAGDQICSECGLVVGD 36 (309)
Q Consensus 5 ~~~Cp~C~~~~~v~D~~~G~~vC~~CG~V~~e 36 (309)
...||.||+..+ .-...|-..|..||.++.-
T Consensus 35 ky~CpfCGk~~v-kR~a~GIW~C~kCg~~~AG 65 (83)
T 3j21_i 35 KHTCPVCGRKAV-KRISTGIWQCQKCGATFAG 65 (83)
T ss_dssp CBCCSSSCSSCE-EEEETTEEEETTTCCEEEC
T ss_pred ccCCCCCCCcee-EecCcCeEEcCCCCCEEeC
Confidence 467999998864 4467999999999998743
No 64
>3jyw_9 60S ribosomal protein L43; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}
Probab=92.80 E-value=0.074 Score=36.30 Aligned_cols=31 Identities=23% Similarity=0.264 Sum_probs=25.2
Q ss_pred cccCCCCCCCCeeeeCCCCceecCCCCccccC
Q psy6534 5 KVCCYEHPDAPLIEDYRAGDQICSECGLVVGD 36 (309)
Q Consensus 5 ~~~Cp~C~~~~~v~D~~~G~~vC~~CG~V~~e 36 (309)
...||.||...+ .-...|-..|..||.++.-
T Consensus 26 ky~C~fCgk~~v-kR~a~GIW~C~~C~~~~AG 56 (72)
T 3jyw_9 26 RYDCSFCGKKTV-KRGAAGIWTCSCCKKTVAG 56 (72)
T ss_dssp CBCCSSCCSSCB-SBCSSSCBCCSSSCCCCCC
T ss_pred CccCCCCCCcee-EecCCCeEECCCCCCEEeC
Confidence 467999998764 4567999999999998743
No 65
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=92.77 E-value=0.081 Score=34.41 Aligned_cols=28 Identities=32% Similarity=0.698 Sum_probs=22.3
Q ss_pred CcccCCCCCCCCeeeeCCCCceecC--CCCccc
Q psy6534 4 NKVCCYEHPDAPLIEDYRAGDQICS--ECGLVV 34 (309)
Q Consensus 4 ~~~~Cp~C~~~~~v~D~~~G~~vC~--~CG~V~ 34 (309)
+.+.||.|++ .+..+. |.++|. +||...
T Consensus 9 ~iL~CP~c~~-~L~~~~--~~L~C~~~~c~~~Y 38 (56)
T 2kpi_A 9 EILACPACHA-PLEERD--AELICTGQDCGLAY 38 (56)
T ss_dssp TSCCCSSSCS-CEEEET--TEEEECSSSCCCEE
T ss_pred hheeCCCCCC-cceecC--CEEEcCCcCCCcEE
Confidence 3568999987 466664 999999 999875
No 66
>2pmi_B PHO85 cyclin PHO80, aminoglycoside anti; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_B*
Probab=92.72 E-value=2.9 Score=36.59 Aligned_cols=103 Identities=8% Similarity=-0.012 Sum_probs=79.1
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhcC--CC-CCCCchhHHHHHHHHHHHHhcC-CCccHHHHHHHhcccHHHHHH
Q psy6534 111 IREINSMADRINLTKTIVDRANNLFKQVHDG--KN-LKGRSNDAIASACLYIACRQEG-VPRTFKEICAVSKISKKEIGR 186 (309)
Q Consensus 111 ~~~I~~i~~~L~Lp~~v~e~A~~~~~~~~~~--~~-~~gr~~~~vaaAcly~acR~~~-~~~tl~eia~~~~~~~~~i~~ 186 (309)
.++|.++....+++..+.=.|..|+.++... ++ +...+..-+..+|+-+|.|... ...+-+..|.+.|++.+++.+
T Consensus 78 ~~Yl~RI~k~t~ls~~~ll~ALvYLdRL~~~~p~~~l~~~nvHRLlLtALmlAsK~ldD~~ysN~~wAkVgGisl~ELN~ 157 (293)
T 2pmi_B 78 FNYFIRLTKFSSLEHCVLMTSLYYIDLLQTVYPDFTLNSLTAHRFLLTATTVATKGLCDSFSTNAHYAKVGGVRCHELNI 157 (293)
T ss_dssp HHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHCTTCCCSTTTHHHHHHHHHHHHHHHHCSSCCCHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhCCCCccCCchHHHHHHHHHHHHHHhccccccChhHhhhccCcCHHHHHH
Confidence 3578888888899988888888888888652 22 2334566777788889998664 567889999999999999999
Q ss_pred HHHHHHHHhcccCCCCChHHHHHHHHhh
Q psy6534 187 CFKLILKALETSVDLITTGDFMSRFCSN 214 (309)
Q Consensus 187 ~~~~l~~~l~~~~~~~~p~~~i~~~~~~ 214 (309)
..+.+...+++++ .+++++|..-+.+.
T Consensus 158 LE~eFL~lLdf~L-~V~~ee~~~cy~E~ 184 (293)
T 2pmi_B 158 LENDFLKRVNYRI-IPRDHNITLCSIEQ 184 (293)
T ss_dssp HHHHHHHTTTTCC-SCCTTHHHHHHHHS
T ss_pred HHHHHHHHcCCce-eeCHHHHHHHHHHH
Confidence 9999999999876 35566666544444
No 67
>3cc2_Z 50S ribosomal protein L37AE, 50S ribosomal protein L32E; genomic sequnece for R-proteins, ribonucleoprotein, ribosoma protein, RNA-binding; HET: 1MA OMU OMG UR3 PSU; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 3cc4_Z* 3cc7_Z* 3cce_Z* 3ccj_Z* 3ccl_Z* 3ccm_Z* 3ccq_Z* 3ccr_Z* 3ccs_Z* 3ccu_Z* 3ccv_Z* 3cd6_Z* 3cma_Z* 3cme_Z* 3i55_Z* 3i56_Z* 3cpw_Y* 4adx_Z
Probab=92.64 E-value=0.048 Score=40.75 Aligned_cols=30 Identities=17% Similarity=0.238 Sum_probs=24.0
Q ss_pred cccCCCCCCCCeeeeCCCCceecCCCCcccc
Q psy6534 5 KVCCYEHPDAPLIEDYRAGDQICSECGLVVG 35 (309)
Q Consensus 5 ~~~Cp~C~~~~~v~D~~~G~~vC~~CG~V~~ 35 (309)
...||.||...+-. ...|-..|..||.++.
T Consensus 60 kytCPfCGk~~vKR-~avGIW~C~~Cgk~fA 89 (116)
T 3cc2_Z 60 DHACPNCGEDRVDR-QGTGIWQCSYCDYKFT 89 (116)
T ss_dssp CEECSSSCCEEEEE-EETTEEEETTTCCEEE
T ss_pred CCcCCCCCCceeEe-cCceeEECCCCCCEEE
Confidence 46799999865544 4689999999999973
No 68
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=92.59 E-value=0.12 Score=36.00 Aligned_cols=31 Identities=16% Similarity=0.236 Sum_probs=28.3
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHHHHhh
Q psy6534 259 SDKRSQKEIGDIAGVAEVTIRQSYKLMYPHA 289 (309)
Q Consensus 259 ~~~~~~~~ia~~~~vs~~ti~~~~kei~~~~ 289 (309)
|.+.+.+|||+.+|+|+.|+++-.+.|.+.-
T Consensus 22 g~~psv~EIa~~lgvS~~TVrr~L~~Le~kG 52 (77)
T 2jt1_A 22 GAPVKTRDIADAAGLSIYQVRLYLEQLHDVG 52 (77)
T ss_dssp TSCEEHHHHHHHHTCCHHHHHHHHHHHHHTT
T ss_pred CCCcCHHHHHHHHCCCHHHHHHHHHHHHHCC
Confidence 7889999999999999999999999998763
No 69
>3iz5_m 60S ribosomal protein L43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_m 1ysh_D 2zkr_z
Probab=92.41 E-value=0.091 Score=37.64 Aligned_cols=30 Identities=23% Similarity=0.335 Sum_probs=24.6
Q ss_pred cccCCCCCCCCeeeeCCCCceecCCCCcccc
Q psy6534 5 KVCCYEHPDAPLIEDYRAGDQICSECGLVVG 35 (309)
Q Consensus 5 ~~~Cp~C~~~~~v~D~~~G~~vC~~CG~V~~ 35 (309)
...||.||...+ .-...|-..|..||.++.
T Consensus 36 ky~CpfCgk~~v-kR~a~GIW~C~~Cg~~~A 65 (92)
T 3iz5_m 36 KYFCEFCGKFAV-KRKAVGIWGCKDCGKVKA 65 (92)
T ss_dssp CBCCTTTCSSCB-EEEETTEEECSSSCCEEE
T ss_pred cccCcccCCCee-EecCcceEEcCCCCCEEe
Confidence 457999998865 445799999999998873
No 70
>2lnb_A Z-DNA-binding protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, immune system; NMR {Homo sapiens}
Probab=92.30 E-value=0.26 Score=33.92 Aligned_cols=42 Identities=14% Similarity=0.286 Sum_probs=37.3
Q ss_pred HHHHHHHhcCCCccHHHHHHHhcccHHHHHHHHHHHHHHhcc
Q psy6534 156 CLYIACRQEGVPRTFKEICAVSKISKKEIGRCFKLILKALET 197 (309)
Q Consensus 156 cly~acR~~~~~~tl~eia~~~~~~~~~i~~~~~~l~~~l~~ 197 (309)
-|+-+.+..+-|....||++.+|++.+++.+++..|.+.-.+
T Consensus 23 kVLe~LkeaG~PlkageIae~~GvdKKeVdKaik~LKkEgkI 64 (80)
T 2lnb_A 23 RILQVLTEAGSPVKLAQLVKECQAPKRELNQVLYRMKKELKV 64 (80)
T ss_dssp HHHHHHHHHTSCEEHHHHHHHHTSCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHcCCCCCHHHHHHHHCCCHHHHHHHHHHHHHcCCc
Confidence 356778999999999999999999999999999999886554
No 71
>1ffk_W Ribosomal protein L37AE; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1jj2_Y 1k73_1* 1k8a_1* 1k9m_1* 1kc8_1* 1kd1_1* 1kqs_Y* 1m1k_1* 1m90_1* 1n8r_1* 1nji_1* 1q7y_1* 1q81_1* 1q82_1* 1q86_1* 1qvf_Y 1qvg_Y 1w2b_Y 3cxc_Y*
Probab=92.14 E-value=0.07 Score=36.60 Aligned_cols=31 Identities=19% Similarity=0.295 Sum_probs=24.6
Q ss_pred cccCCCCCCCCeeeeCCCCceecCCCCccccC
Q psy6534 5 KVCCYEHPDAPLIEDYRAGDQICSECGLVVGD 36 (309)
Q Consensus 5 ~~~Cp~C~~~~~v~D~~~G~~vC~~CG~V~~e 36 (309)
...||.||...+- -...|-..|..||.++.-
T Consensus 27 ky~C~fCgk~~vk-R~a~GIW~C~~C~~~~AG 57 (73)
T 1ffk_W 27 KYKCPVCGFPKLK-RASTSIWVCGHCGYKIAG 57 (73)
T ss_pred CccCCCCCCceeE-EEEeEEEECCCCCcEEEC
Confidence 4579999987654 446899999999999743
No 72
>3izc_m 60S ribosomal protein RPL43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_m 3o58_g 3o5h_g 3u5e_p 3u5i_p 4b6a_p 1s1i_9
Probab=91.93 E-value=0.099 Score=37.41 Aligned_cols=30 Identities=23% Similarity=0.272 Sum_probs=24.5
Q ss_pred cccCCCCCCCCeeeeCCCCceecCCCCcccc
Q psy6534 5 KVCCYEHPDAPLIEDYRAGDQICSECGLVVG 35 (309)
Q Consensus 5 ~~~Cp~C~~~~~v~D~~~G~~vC~~CG~V~~ 35 (309)
...||.||...+ .-...|-..|..||.++.
T Consensus 36 ky~CpfCgk~~v-kR~a~GIW~C~~C~~~~A 65 (92)
T 3izc_m 36 RYDCSFCGKKTV-KRGAAGIWTCSCCKKTVA 65 (92)
T ss_dssp CCCCSSSCSSCC-EEEETTEEECTTTCCEEE
T ss_pred CCcCCCCCCcee-eecccceEEcCCCCCEEe
Confidence 457999998865 445789999999998873
No 73
>2qdj_A Retinoblastoma-associated protein; cyclin fold, cyclin wedge, antitumor protein; 2.00A {Homo sapiens}
Probab=91.87 E-value=0.78 Score=40.51 Aligned_cols=70 Identities=13% Similarity=0.203 Sum_probs=51.4
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHhhhc-Cc---cCCCChHHHHHHHHHHHHHh-CCCCCCHHHHHHHhCCCHHHH
Q psy6534 208 MSRFCSNLSLPNMVQKAATHIARKAVEL-DI---VPGRSPISVAAAAIYMASQA-SSDKRSQKEIGDIAGVAEVTI 278 (309)
Q Consensus 208 i~~~~~~L~l~~~~~~~a~~i~~~~~~~-~l---~~Gr~P~~iaaAaiyla~~~-~~~~~~~~~ia~~~~vs~~ti 278 (309)
...+|+.|++++.+.+.|+.+.+.+... .+ ..|. ..-.-.||||.|+.- .+..+++.+|-+.++++....
T Consensus 6 F~~lC~~Lnld~~~~~~Aw~~~~~~~~~~~~~~~~~~~-~~~~w~acLY~a~~~~~~n~vsLt~LLr~~~lsi~~F 80 (304)
T 2qdj_A 6 FTALCQKLKIPDHVRERAWLTWEKVSSVDGVLGGYIQK-KKELWGICIFIAAVDLDEMSFTFTELQKNIEISVHKF 80 (304)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHC----------C-HHHHHHHHHHHHHHHHTCCCSCHHHHHHHHTCCHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHhccccccCCCccc-hHHHHHHhHHHHhhccCCCcCcHHHHHHHcCCCHHHH
Confidence 4558999999999999999999998773 21 2233 444445559999974 567799999999999987654
No 74
>2k5r_A Uncharacterized protein XF2673; solution structure, structural genomics, PSI-2, protein structure initiative; NMR {Xylella fastidiosa TEMECULA1}
Probab=91.37 E-value=0.084 Score=38.35 Aligned_cols=30 Identities=17% Similarity=0.147 Sum_probs=23.0
Q ss_pred CcccCCCCCCCCeeeeCC---------------------------CCceecCCCCccc
Q psy6534 4 NKVCCYEHPDAPLIEDYR---------------------------AGDQICSECGLVV 34 (309)
Q Consensus 4 ~~~~Cp~C~~~~~v~D~~---------------------------~G~~vC~~CG~V~ 34 (309)
..+.||.|+. .+..+.. +|.++|..||...
T Consensus 7 dILaCP~cK~-pL~l~~~~~~~~~~ca~~~~~~~~~~~~~~~e~~~~~LvC~~c~~~Y 63 (97)
T 2k5r_A 7 HLLCSPDTRQ-PLSLLESKGLEALNKAIVSGTVQRADGSIQNQSLHEALITRDRKQVF 63 (97)
T ss_dssp SSCCCCTTSS-CCEECCHHHHHHHHHHHHHTCCBCTTSCBCCCCCSEEEECTTSCEEE
T ss_pred hheECCCCCC-cccccccchhhhhhhhhhccccccccccccccccCCeEEcCCCCCCc
Confidence 3568999986 4555544 7899999999875
No 75
>3h4c_A Transcription factor TFIIB-like; cyclin, transcription factor TFIIB repeat; 2.30A {Trypanosoma brucei brucei}
Probab=91.35 E-value=0.66 Score=38.17 Aligned_cols=63 Identities=21% Similarity=0.162 Sum_probs=48.1
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHhhhc---CccCCCChHHHHHHHHHHHHHhCCCCCCHHHH
Q psy6534 205 GDFMSRFCSNLSLPNMVQKAATHIARKAVEL---DIVPGRSPISVAAAAIYMASQASSDKRSQKEI 267 (309)
Q Consensus 205 ~~~i~~~~~~L~l~~~~~~~a~~i~~~~~~~---~l~~Gr~P~~iaaAaiyla~~~~~~~~~~~~i 267 (309)
..-+.++-.+-.+|+.+.+.|.+|++...-. .=..-.+|..+||||+.+|++..+.+++..|+
T Consensus 16 ~nclr~L~kKs~~~eaVL~~AieLar~fvg~rR~rgqRvE~q~dVAAAc~miAae~~~~PiplaE~ 81 (260)
T 3h4c_A 16 LNCMRGLHKKAVLPEPVLDRGIELARAFVGGRRARGQRVERQPDVAAACLMIAAEEAQQPLPLAEV 81 (260)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HHHHHHHHhhccCcHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHHHHHHHcCCCccHHHH
Confidence 3456777778889999999999998765321 11112479999999999999999999998765
No 76
>4ell_A Retinoblastoma-associated protein; cyclin fold, tumor suppressor, cell cycle; 1.98A {Homo sapiens}
Probab=91.19 E-value=0.38 Score=44.21 Aligned_cols=79 Identities=11% Similarity=0.140 Sum_probs=60.6
Q ss_pred HHHHHhhCCCCH-HHHHHHHHHHHHhh--hcCccCCCChHHHHHHHHHHHHHhCCCCCCHHHHHHHhCC-----------
Q psy6534 208 MSRFCSNLSLPN-MVQKAATHIARKAV--ELDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGV----------- 273 (309)
Q Consensus 208 i~~~~~~L~l~~-~~~~~a~~i~~~~~--~~~l~~Gr~P~~iaaAaiyla~~~~~~~~~~~~ia~~~~v----------- 273 (309)
+..+|++|+++. ++.+..|.+++.+. +..++.+|+-.-|...|||..|+..+..++.++|-..-.-
T Consensus 286 l~~LC~~L~~~~~~l~~~IWt~fe~~l~~~teLm~dRHLDQiiLCsiY~i~Kv~~~~~tFk~Ii~~Yr~qPqa~~~vyr~ 365 (411)
T 4ell_A 286 LNTLCERLLSEHPELEHIIWTLFQHTLQNEYELMRDRHLDQIMMCSMYGICKVKNIDLKFKIIVTAYKDLPHAVQETFKR 365 (411)
T ss_dssp HHHHHHHHCTTSTTHHHHHHHHHHHHHHHCGGGGTTSCHHHHHHHHHHHHHHTTTCCCCHHHHHHHHTTSTTCCTHHHHS
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHHHHhhhHhhccccHHHHHHHHHHHHHhhccCCCCHHHHHHHHHhCcCCCCceeEE
Confidence 566789998764 56677777777654 3579999999999999999999999999999999764322
Q ss_pred ------CHHHHHHHHHHHH
Q psy6534 274 ------AEVTIRQSYKLMY 286 (309)
Q Consensus 274 ------s~~ti~~~~kei~ 286 (309)
....|-+-|++++
T Consensus 366 Vli~~g~~gDII~FYN~Vf 384 (411)
T 4ell_A 366 VLIKEEEYDSIIVFYNSVF 384 (411)
T ss_dssp EECSSSCEECHHHHHHHTH
T ss_pred EEeCCCCcccHHHHHHHHH
Confidence 2345667777754
No 77
>4a17_Y RPL37A, 60S ribosomal protein L32; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_Y 4a1c_Y 4a1e_Y
Probab=90.31 E-value=0.12 Score=37.63 Aligned_cols=29 Identities=17% Similarity=0.303 Sum_probs=24.0
Q ss_pred cccCCCCCCCCeeeeCCCCceecCCCCccc
Q psy6534 5 KVCCYEHPDAPLIEDYRAGDQICSECGLVV 34 (309)
Q Consensus 5 ~~~Cp~C~~~~~v~D~~~G~~vC~~CG~V~ 34 (309)
...||.||...+ .-...|-..|..||.++
T Consensus 36 ky~CpfCgk~~v-KR~a~GIW~C~kCg~~~ 64 (103)
T 4a17_Y 36 KYGCPFCGKVAV-KRAAVGIWKCKPCKKII 64 (103)
T ss_dssp CEECTTTCCEEE-EEEETTEEEETTTTEEE
T ss_pred CCCCCCCCCcee-eecCcceEEcCCCCCEE
Confidence 457999998754 45679999999999887
No 78
>2w7n_A TRFB transcriptional repressor protein; INCP, plasmid, repressor, DNA-binding, transcription/DNA; HET: BRU; 1.85A {Escherichia coli}
Probab=89.93 E-value=0.71 Score=33.79 Aligned_cols=52 Identities=13% Similarity=0.240 Sum_probs=37.1
Q ss_pred hHHHHHHHHHHHHHhCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHh-hcccCCCCcCC
Q psy6534 243 PISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPH-ASKLFPQDFVF 299 (309)
Q Consensus 243 P~~iaaAaiyla~~~~~~~~~~~~ia~~~~vs~~ti~~~~kei~~~-~~~l~~~~~~~ 299 (309)
...+-+|-+|+ -...+|.|||+.+|+|..++.+..+.-.+. ..+.+|+.|..
T Consensus 21 ~~~~~~A~lyY-----v~g~tQ~eIA~~lGiSR~~VsrlL~~Ar~~~~~~~~P~g~~r 73 (101)
T 2w7n_A 21 QQTIEIARGVL-----VDGKPQATFATSLGLTRGAVSQAVHRVWAAFEDKNLPEGYAR 73 (101)
T ss_dssp HHHHHHHHHHH-----TTCCCHHHHHHHHTCCHHHHHHHHHHHHHHHHHTCCCTTEEE
T ss_pred HHHHHHHHHHH-----HcCCCHHHHHHHHCCCHHHHHHHHHHHHHHHhccCCCCCeeE
Confidence 34444444453 467899999999999999999998887654 23356666644
No 79
>2pmi_B PHO85 cyclin PHO80, aminoglycoside anti; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_B*
Probab=89.50 E-value=8.5 Score=33.57 Aligned_cols=92 Identities=10% Similarity=0.001 Sum_probs=73.7
Q ss_pred cCCCCChHHHHHHHHhhCCCCHHHHHHHHHHHHHhhhc---CccCCCChHHHHHHHHHHHHHhCC-CCCCHHHHHHHhCC
Q psy6534 198 SVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVEL---DIVPGRSPISVAAAAIYMASQASS-DKRSQKEIGDIAGV 273 (309)
Q Consensus 198 ~~~~~~p~~~i~~~~~~L~l~~~~~~~a~~i~~~~~~~---~l~~Gr~P~~iaaAaiyla~~~~~-~~~~~~~ia~~~~v 273 (309)
.+|.+....|+.++...-.++..+.-.|...++++... .........-+..+|+.+|++..+ .-.+-+..|++.|+
T Consensus 71 ~~P~ISI~~Yl~RI~k~t~ls~~~ll~ALvYLdRL~~~~p~~~l~~~nvHRLlLtALmlAsK~ldD~~ysN~~wAkVgGi 150 (293)
T 2pmi_B 71 IPPNISIFNYFIRLTKFSSLEHCVLMTSLYYIDLLQTVYPDFTLNSLTAHRFLLTATTVATKGLCDSFSTNAHYAKVGGV 150 (293)
T ss_dssp SCCSSCHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHCTTCCCSTTTHHHHHHHHHHHHHHHHCSSCCCHHHHHHHHTS
T ss_pred CCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhCCCCccCCchHHHHHHHHHHHHHHhccccccChhHhhhccCc
Confidence 46778889999999999999988887777666666542 233456788899999999999875 45678999999999
Q ss_pred CHHHHHHHHHHHHHhh
Q psy6534 274 AEVTIRQSYKLMYPHA 289 (309)
Q Consensus 274 s~~ti~~~~kei~~~~ 289 (309)
+...+...=+++....
T Consensus 151 sl~ELN~LE~eFL~lL 166 (293)
T 2pmi_B 151 RCHELNILENDFLKRV 166 (293)
T ss_dssp CHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHc
Confidence 9999988888877654
No 80
>1qyp_A RNA polymerase II; transcription, RPB9, Zn ribbon, hyperthermophilic, extremophIle; NMR {Thermococcus celer} SCOP: g.41.3.1
Probab=88.74 E-value=0.24 Score=32.15 Aligned_cols=30 Identities=13% Similarity=0.155 Sum_probs=20.5
Q ss_pred ccCCCCCCCCeeeeC------CCC---ceecCCCCcccc
Q psy6534 6 VCCYEHPDAPLIEDY------RAG---DQICSECGLVVG 35 (309)
Q Consensus 6 ~~Cp~C~~~~~v~D~------~~G---~~vC~~CG~V~~ 35 (309)
..||.||....++.. +++ .++|.+||..-.
T Consensus 16 ~~Cp~Cg~~~~~~~q~Q~rsadep~T~fy~C~~Cg~~w~ 54 (57)
T 1qyp_A 16 ITCPKCGNDTAYWWEMQTRAGDEPSTIFYKCTKCGHTWR 54 (57)
T ss_dssp CCCTTTCCSEEEEEEECCSSSSCSSEEEEEESSSCCEEE
T ss_pred eECCCCCCCEEEEEEeecccCCCCCcEEEEcCCCCCEec
Confidence 579999987655321 123 479999998643
No 81
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=88.66 E-value=0.15 Score=32.36 Aligned_cols=25 Identities=24% Similarity=0.546 Sum_probs=20.6
Q ss_pred CcccCCCCCCCCeeeeCCCCceecCCCCcc
Q psy6534 4 NKVCCYEHPDAPLIEDYRAGDQICSECGLV 33 (309)
Q Consensus 4 ~~~~Cp~C~~~~~v~D~~~G~~vC~~CG~V 33 (309)
+...||.|+.. ...|-..|..||..
T Consensus 13 ~k~iCpkC~a~-----~~~gaw~CrKCG~~ 37 (51)
T 3j21_g 13 KKYVCLRCGAT-----NPWGAKKCRKCGYK 37 (51)
T ss_dssp SEEECTTTCCE-----ECTTCSSCSSSSSC
T ss_pred CCccCCCCCCc-----CCCCceecCCCCCc
Confidence 45689999874 35899999999987
No 82
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=88.51 E-value=0.22 Score=33.93 Aligned_cols=26 Identities=23% Similarity=0.566 Sum_probs=15.2
Q ss_pred cCCCCCCCCeeeeCCCCceecCCCCc-cc
Q psy6534 7 CCYEHPDAPLIEDYRAGDQICSECGL-VV 34 (309)
Q Consensus 7 ~Cp~C~~~~~v~D~~~G~~vC~~CG~-V~ 34 (309)
.|+.||...-+ .....+.|..||. ||
T Consensus 30 ~C~~CG~~~e~--~~~d~irCp~CG~RIL 56 (70)
T 1twf_L 30 ICAECSSKLSL--SRTDAVRCKDCGHRIL 56 (70)
T ss_dssp ECSSSCCEECC--CTTSTTCCSSSCCCCC
T ss_pred ECCCCCCccee--CCCCCccCCCCCceEe
Confidence 57888764211 1234567888887 54
No 83
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=88.20 E-value=0.84 Score=30.28 Aligned_cols=34 Identities=18% Similarity=0.093 Sum_probs=28.9
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHhhcccC
Q psy6534 260 DKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKLF 293 (309)
Q Consensus 260 ~~~~~~~ia~~~~vs~~ti~~~~kei~~~~~~l~ 293 (309)
...+.+|||+.+|+|+.|+++......+......
T Consensus 24 ~g~s~~eIA~~lgis~~tV~~~~~ra~~kLr~~~ 57 (68)
T 2p7v_B 24 TDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPS 57 (68)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHHHHHHGGGSCC
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHH
Confidence 4689999999999999999999888776665544
No 84
>1nui_A DNA primase/helicase; zinc-biding domain, toprim fold, DNA replication, DNA-direct polymerase, primosome, late protein, ATP-binding; HET: DNA; 2.90A {Enterobacteria phage T7} SCOP: e.13.1.2 g.41.3.2
Probab=88.16 E-value=0.28 Score=42.11 Aligned_cols=28 Identities=14% Similarity=0.197 Sum_probs=21.4
Q ss_pred cccCCCCCCC-CeeeeCCCCceecCCCCcc
Q psy6534 5 KVCCYEHPDA-PLIEDYRAGDQICSECGLV 33 (309)
Q Consensus 5 ~~~Cp~C~~~-~~v~D~~~G~~vC~~CG~V 33 (309)
...||.||++ .+..+ ..|...|.+||.-
T Consensus 14 ~~~CP~Cg~~d~~~~~-~dg~~~C~~Cg~~ 42 (255)
T 1nui_A 14 HIPCDNCGSSDGNSLF-SDGHTFCYVCEKW 42 (255)
T ss_dssp EECCSSSCCSSCEEEE-TTSCEEETTTCCE
T ss_pred CCcCCCCCCCCCceEe-CCCCeecccCCCc
Confidence 4579999885 45555 3578999999975
No 85
>1jhg_A Trp operon repressor; complex (regulatory protein-peptide), DNA-binding regulatory complex (regulatory protein-peptide) complex; HET: TRP; 1.30A {Escherichia coli} SCOP: a.4.12.1 PDB: 1co0_A* 1mi7_R 1p6z_R 1wrp_R* 1zt9_A* 2oz9_R* 3ssw_R 3wrp_A 1rcs_A* 1wrs_R* 1wrt_R 2xdi_A 3ssx_R* 1trr_A* 1tro_A*
Probab=87.97 E-value=0.34 Score=35.52 Aligned_cols=27 Identities=22% Similarity=0.262 Sum_probs=22.9
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHH
Q psy6534 260 DKRSQKEIGDIAGVAEVTIRQSYKLMY 286 (309)
Q Consensus 260 ~~~~~~~ia~~~~vs~~ti~~~~kei~ 286 (309)
-..|++|||+.+|+|.+||.+.-+.|.
T Consensus 57 ge~TQREIA~~lGiS~stISRi~r~L~ 83 (101)
T 1jhg_A 57 GEMSQRELKNELGAGIATITRGSNSLK 83 (101)
T ss_dssp CCSCHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHCCChhhhhHHHHHHH
Confidence 459999999999999999988855443
No 86
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=87.56 E-value=0.52 Score=31.45 Aligned_cols=22 Identities=27% Similarity=0.315 Sum_probs=19.8
Q ss_pred CCHHHHHHHhCCCHHHHHHHHH
Q psy6534 262 RSQKEIGDIAGVAEVTIRQSYK 283 (309)
Q Consensus 262 ~~~~~ia~~~~vs~~ti~~~~k 283 (309)
+|++|||+.+|||..|+.+..+
T Consensus 1 ~T~~diA~~aGVS~sTVSrvLn 22 (65)
T 1uxc_A 1 MKLDEIARLAGVSRTTASYVIN 22 (65)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHHHHc
Confidence 4789999999999999998775
No 87
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=86.87 E-value=0.86 Score=30.42 Aligned_cols=32 Identities=9% Similarity=0.000 Sum_probs=28.3
Q ss_pred CCCCCCHHHHHHHhCCCHHHHHHHHHHHHHhh
Q psy6534 258 SSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHA 289 (309)
Q Consensus 258 ~~~~~~~~~ia~~~~vs~~ti~~~~kei~~~~ 289 (309)
.+.+++..|||+.+|++..|+.+..+.|.+.-
T Consensus 22 ~~~~~s~~eLA~~lglsr~tv~~~l~~L~~~G 53 (67)
T 2heo_A 22 DGGPVAIFQLVKKCQVPKKTLNQVLYRLKKED 53 (67)
T ss_dssp HCSCEEHHHHHHHHCSCHHHHHHHHHHHHHTT
T ss_pred cCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence 35678999999999999999999999998764
No 88
>1k81_A EIF-2-beta, probable translation initiation factor 2 beta subunit; zinc ribbon; NMR {Methanocaldococcus jannaschii} SCOP: g.59.1.1
Probab=86.64 E-value=0.24 Score=29.03 Aligned_cols=27 Identities=26% Similarity=0.518 Sum_probs=19.4
Q ss_pred cCCCCCCCC--eeeeCCCCceecCCCCcc
Q psy6534 7 CCYEHPDAP--LIEDYRAGDQICSECGLV 33 (309)
Q Consensus 7 ~Cp~C~~~~--~v~D~~~G~~vC~~CG~V 33 (309)
.||.|++++ ++.+...=.+.|..||..
T Consensus 2 lC~~C~~peT~l~~~~~~~~l~C~aCG~~ 30 (36)
T 1k81_A 2 ICRECGKPDTKIIKEGRVHLLKCMACGAI 30 (36)
T ss_dssp CCSSSCSCEEEEEEETTEEEEEEETTTEE
T ss_pred CCcCCCCCCcEEEEeCCcEEEEhhcCCCc
Confidence 699999875 444444446779999976
No 89
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=86.38 E-value=0.88 Score=31.56 Aligned_cols=30 Identities=7% Similarity=0.093 Sum_probs=27.1
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHhh
Q psy6534 260 DKRSQKEIGDIAGVAEVTIRQSYKLMYPHA 289 (309)
Q Consensus 260 ~~~~~~~ia~~~~vs~~ti~~~~kei~~~~ 289 (309)
-.++.+|+|+.++||+.|||+-..+|.+.-
T Consensus 15 g~vsv~eLa~~l~VS~~TIRrdL~~Le~~G 44 (78)
T 1xn7_A 15 GRMEAAQISQTLNTPQPMINAMLQQLESMG 44 (78)
T ss_dssp CSBCHHHHHHHTTCCHHHHHHHHHHHHHHT
T ss_pred CCCcHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence 468999999999999999999999998764
No 90
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=86.23 E-value=0.68 Score=27.96 Aligned_cols=25 Identities=20% Similarity=0.040 Sum_probs=21.6
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHHH
Q psy6534 261 KRSQKEIGDIAGVAEVTIRQSYKLM 285 (309)
Q Consensus 261 ~~~~~~ia~~~~vs~~ti~~~~kei 285 (309)
..+.++||+.+||+..||.+..+..
T Consensus 21 g~s~~~IA~~lgis~~Tv~~~~~~~ 45 (51)
T 1tc3_C 21 NVSLHEMSRKISRSRHCIRVYLKDP 45 (51)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHHHCS
T ss_pred CCCHHHHHHHHCcCHHHHHHHHhhH
Confidence 4689999999999999998877643
No 91
>2apo_B Ribosome biogenesis protein NOP10; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: g.41.16.1 PDB: 2aqc_A
Probab=86.18 E-value=0.27 Score=32.24 Aligned_cols=27 Identities=22% Similarity=0.456 Sum_probs=20.4
Q ss_pred CCCCcccCCCCCCCCeeeeCCCCceecCCCCccc
Q psy6534 1 MNINKVCCYEHPDAPLIEDYRAGDQICSECGLVV 34 (309)
Q Consensus 1 ~~~~~~~Cp~C~~~~~v~D~~~G~~vC~~CG~V~ 34 (309)
|......||.||...+ ..+|..||...
T Consensus 2 Mks~mr~C~~CgvYTL-------k~~CP~CG~~T 28 (60)
T 2apo_B 2 VEMRMKKCPKCGLYTL-------KEICPKCGEKT 28 (60)
T ss_dssp -CCCCEECTTTCCEES-------SSBCSSSCSBC
T ss_pred chhhceeCCCCCCEec-------cccCcCCCCcC
Confidence 6667789999987544 56799999775
No 92
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=86.02 E-value=1.1 Score=31.36 Aligned_cols=30 Identities=7% Similarity=0.140 Sum_probs=26.9
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHHHHh
Q psy6534 259 SDKRSQKEIGDIAGVAEVTIRQSYKLMYPH 288 (309)
Q Consensus 259 ~~~~~~~~ia~~~~vs~~ti~~~~kei~~~ 288 (309)
|..++..+||+.+|++..||+++...|.+.
T Consensus 25 g~~~t~~eLA~~Lgvsr~tV~~~L~~Le~~ 54 (81)
T 1qbj_A 25 GKATTAHDLSGKLGTPKKEINRVLYSLAKK 54 (81)
T ss_dssp TCCBCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCCcCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 357999999999999999999999999764
No 93
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=85.90 E-value=0.99 Score=29.76 Aligned_cols=34 Identities=15% Similarity=-0.059 Sum_probs=27.3
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHhhcccC
Q psy6534 260 DKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKLF 293 (309)
Q Consensus 260 ~~~~~~~ia~~~~vs~~ti~~~~kei~~~~~~l~ 293 (309)
...+.++||+.+|+|+.|++++.....+...+.+
T Consensus 30 ~g~s~~eIA~~lgis~~tv~~~~~ra~~~l~~~l 63 (70)
T 2o8x_A 30 LGLSYADAAAVCGCPVGTIRSRVARARDALLADA 63 (70)
T ss_dssp SCCCHHHHHHHHTSCHHHHHHHHHHHHHHHHC--
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHh
Confidence 4579999999999999999999888776655544
No 94
>1j1v_A Chromosomal replication initiator protein DNAA, 5'-D(*CP*CP*TP*GP*TP*GP*GP*AP*TP*AP*AP*CP*A)-3'; protein-DNA complex; 2.10A {Escherichia coli} SCOP: a.4.12.2
Probab=85.85 E-value=5.6 Score=28.41 Aligned_cols=70 Identities=20% Similarity=0.209 Sum_probs=49.0
Q ss_pred ChHHHHHHHHhhCCCCHHHHHHHHHHHHHhhhcCccCCCChHHHHH---HHHHHHHHhCCCCCCHHHHHHHh-CCCHHHH
Q psy6534 203 TTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAA---AAIYMASQASSDKRSQKEIGDIA-GVAEVTI 278 (309)
Q Consensus 203 ~p~~~i~~~~~~L~l~~~~~~~a~~i~~~~~~~~l~~Gr~P~~iaa---Aaiyla~~~~~~~~~~~~ia~~~-~vs~~ti 278 (309)
+++..+..+|+.+|++.+.. ...++...++- -|+|++-++. ..++.+|++.+ |.+.+|+
T Consensus 2 t~~~I~~~Va~~f~i~~~dl---------------~s~~R~~~i~~aRqiamyL~r~~t--~~Sl~~IG~~fggrdHsTV 64 (94)
T 1j1v_A 2 TIDNIQKTVAEYYKIKVADL---------------LSKRRSRSVARPRQMAMALAKELT--NHSLPEIGDAFGGRDHTTV 64 (94)
T ss_dssp CHHHHHHHHHHHTTCCHHHH---------------HSCCCCHHHHHHHHHHHHHHHHHS--CCCHHHHHHHTTSCCHHHH
T ss_pred CHHHHHHHHHHHhCCCHHHH---------------hCCCCCchhHHHHHHHHHHHHHHH--CcCHHHHHHHhCCCCHHHH
Confidence 45667777888888876422 11222223332 4689988776 56899999999 8999999
Q ss_pred HHHHHHHHHhh
Q psy6534 279 RQSYKLMYPHA 289 (309)
Q Consensus 279 ~~~~kei~~~~ 289 (309)
..+++.+.+..
T Consensus 65 ~ha~~ki~~~~ 75 (94)
T 1j1v_A 65 LHACRKIEQLR 75 (94)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999987654
No 95
>4ham_A LMO2241 protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, winged helix-turn-helix, four helix bundle; 1.91A {Listeria monocytogenes}
Probab=85.71 E-value=0.68 Score=35.52 Aligned_cols=30 Identities=23% Similarity=0.348 Sum_probs=26.5
Q ss_pred CCCC-CHHHHHHHhCCCHHHHHHHHHHHHHh
Q psy6534 259 SDKR-SQKEIGDIAGVAEVTIRQSYKLMYPH 288 (309)
Q Consensus 259 ~~~~-~~~~ia~~~~vs~~ti~~~~kei~~~ 288 (309)
|.++ +.+++|+.+|||..|+|++|+.|...
T Consensus 35 G~~LPser~La~~~gVSr~tVReAl~~L~~e 65 (134)
T 4ham_A 35 GEKILSIREFASRIGVNPNTVSKAYQELERQ 65 (134)
T ss_dssp TCEECCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCCCccHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 4566 68899999999999999999999765
No 96
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=85.29 E-value=0.76 Score=29.58 Aligned_cols=30 Identities=10% Similarity=0.071 Sum_probs=25.5
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHhh
Q psy6534 260 DKRSQKEIGDIAGVAEVTIRQSYKLMYPHA 289 (309)
Q Consensus 260 ~~~~~~~ia~~~~vs~~ti~~~~kei~~~~ 289 (309)
...+.+|||+.+|+|+.|+++..+.+.+..
T Consensus 12 ~g~s~~eIA~~l~is~~tV~~~~~~~~~kl 41 (61)
T 2jpc_A 12 EGYTNHGISEKLHISIKTVETHRMNMMRKL 41 (61)
T ss_dssp TSCCSHHHHHHTCSCHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 346889999999999999999988887653
No 97
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=85.19 E-value=1.4 Score=30.49 Aligned_cols=31 Identities=19% Similarity=0.189 Sum_probs=26.6
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHhhc
Q psy6534 260 DKRSQKEIGDIAGVAEVTIRQSYKLMYPHAS 290 (309)
Q Consensus 260 ~~~~~~~ia~~~~vs~~ti~~~~kei~~~~~ 290 (309)
...+.+|||+.+|+|+.||++..+.+.+...
T Consensus 35 ~g~s~~eIA~~l~is~~tV~~~l~r~~~kL~ 65 (82)
T 1je8_A 35 QGLPNKMIARRLDITESTVKVHVKHMLKKMK 65 (82)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHHHHHHHHc
Confidence 4479999999999999999999988876643
No 98
>1wii_A Hypothetical UPF0222 protein MGC4549; domain of unknown function, zinc finger, metal-binding protein, structural genomics; NMR {Mus musculus} SCOP: g.41.3.4
Probab=85.04 E-value=0.54 Score=33.23 Aligned_cols=31 Identities=16% Similarity=0.134 Sum_probs=22.6
Q ss_pred cccCCCCCCCC-ee--ee--CCCCceecCCCCcccc
Q psy6534 5 KVCCYEHPDAP-LI--ED--YRAGDQICSECGLVVG 35 (309)
Q Consensus 5 ~~~Cp~C~~~~-~v--~D--~~~G~~vC~~CG~V~~ 35 (309)
...||.|+..+ +. .| ...|.+.|..||.-.+
T Consensus 23 ~F~CPfCnh~~sV~vkidk~~~~g~l~C~~Cg~~~~ 58 (85)
T 1wii_A 23 QFTCPFCNHEKSCDVKMDRARNTGVISCTVCLEEFQ 58 (85)
T ss_dssp CCCCTTTCCSSCEEEEEETTTTEEEEEESSSCCEEE
T ss_pred eEcCCCCCCCCeEEEEEEccCCEEEEEcccCCCeEE
Confidence 35799999773 32 34 4578999999997653
No 99
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=84.41 E-value=0.99 Score=31.13 Aligned_cols=29 Identities=7% Similarity=0.140 Sum_probs=26.4
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHh
Q psy6534 260 DKRSQKEIGDIAGVAEVTIRQSYKLMYPH 288 (309)
Q Consensus 260 ~~~~~~~ia~~~~vs~~ti~~~~kei~~~ 288 (309)
..++..|||+.+|++..||+++.+.|.+.
T Consensus 30 ~~~t~~eLA~~Lgvs~~tV~~~L~~L~~~ 58 (77)
T 1qgp_A 30 KATTAHDLSGKLGTPKKEINRVLYSLAKK 58 (77)
T ss_dssp SCEEHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 47899999999999999999999999764
No 100
>3neu_A LIN1836 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; 1.58A {Listeria innocua}
Probab=84.25 E-value=1.1 Score=33.83 Aligned_cols=30 Identities=27% Similarity=0.330 Sum_probs=26.4
Q ss_pred CCCC-CHHHHHHHhCCCHHHHHHHHHHHHHh
Q psy6534 259 SDKR-SQKEIGDIAGVAEVTIRQSYKLMYPH 288 (309)
Q Consensus 259 ~~~~-~~~~ia~~~~vs~~ti~~~~kei~~~ 288 (309)
|.++ +..++|+.+|||..|++++|+.|...
T Consensus 34 g~~Lps~~~La~~~~vSr~tvr~Al~~L~~~ 64 (125)
T 3neu_A 34 EDKLPSVREMGVKLAVNPNTVSRAYQELERA 64 (125)
T ss_dssp TCBCCCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 3456 49999999999999999999999865
No 101
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=83.81 E-value=1.8 Score=28.83 Aligned_cols=31 Identities=19% Similarity=0.220 Sum_probs=26.3
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHhhc
Q psy6534 260 DKRSQKEIGDIAGVAEVTIRQSYKLMYPHAS 290 (309)
Q Consensus 260 ~~~~~~~ia~~~~vs~~ti~~~~kei~~~~~ 290 (309)
...+.+|||+.+|+|+.|+++..+.+.+...
T Consensus 25 ~g~s~~eIA~~l~is~~tV~~~~~~~~~kl~ 55 (74)
T 1fse_A 25 QDKTTKEIASELFISEKTVRNHISNAMQKLG 55 (74)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHHHHHHHHT
T ss_pred cCCCHHHHHHHHCCCHHHHHHHHHHHHHHHC
Confidence 3459999999999999999999988876543
No 102
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=83.69 E-value=1.7 Score=29.11 Aligned_cols=31 Identities=23% Similarity=0.271 Sum_probs=26.2
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHhhc
Q psy6534 260 DKRSQKEIGDIAGVAEVTIRQSYKLMYPHAS 290 (309)
Q Consensus 260 ~~~~~~~ia~~~~vs~~ti~~~~kei~~~~~ 290 (309)
...+.+|||+.+|+|+.|+++......+...
T Consensus 29 ~~~s~~eIA~~l~is~~tV~~~~~ra~~kLr 59 (73)
T 1ku3_A 29 REHTLEEVGAYFGVTRERIRQIENKALRKLK 59 (73)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 5789999999999999999998777665544
No 103
>1t6s_A Conserved hypothetical protein; A winged helix-turn-helix, structural genomics, BSGC structu by NIH, protein structure initiative, PSI; 1.95A {Chlorobium tepidum tls} SCOP: a.4.5.60 a.4.5.60
Probab=83.48 E-value=4.6 Score=32.10 Aligned_cols=106 Identities=12% Similarity=0.187 Sum_probs=66.4
Q ss_pred hHHHHHHHHHHHHhcCCCccHHHHHHHhc--ccHHHHHHHHHHHHHHhcc-----cCC----------CCChHHHHHHHH
Q psy6534 150 DAIASACLYIACRQEGVPRTFKEICAVSK--ISKKEIGRCFKLILKALET-----SVD----------LITTGDFMSRFC 212 (309)
Q Consensus 150 ~~vaaAcly~acR~~~~~~tl~eia~~~~--~~~~~i~~~~~~l~~~l~~-----~~~----------~~~p~~~i~~~~ 212 (309)
..++=|.||++ +-|+++.+++..++ ++..++...+..|.+.... .+- ..+-..++.++.
T Consensus 9 ~~~iEAlLf~~----~~pvs~~~La~~~~~~~~~~~v~~~l~~L~~~y~~~~rg~~l~~v~~gy~l~t~~~~~~~v~~~~ 84 (162)
T 1t6s_A 9 LRSLEALIFSS----EEPVNLQTLSQITAHKFTPSELQEAVDELNRDYEATGRTFRIHAIAGGYRFLTEPEFADLVRQLL 84 (162)
T ss_dssp HHHHHHHHHHC----SSCBCHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHTCSEEEEEETTEEEEEECGGGHHHHHHHH
T ss_pred HHHHHHHHHHc----CCCCCHHHHHHHhCcCCCHHHHHHHHHHHHHHhhhCCCCEEEEEECCEEEEEEcHHHHHHHHHHh
Confidence 35667888876 67999999999999 9999999998888776531 110 011223333332
Q ss_pred hhCCCCHHHHHHHHHHHHHhhhcCccCCCChHHHHHHHH-HHHHHhCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHh
Q psy6534 213 SNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAI-YMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPH 288 (309)
Q Consensus 213 ~~L~l~~~~~~~a~~i~~~~~~~~l~~Gr~P~~iaaAai-yla~~~~~~~~~~~~ia~~~~vs~~ti~~~~kei~~~ 288 (309)
. . +.|..+--|++ -++.-.++.++|..||++..|++ +....++|.+.
T Consensus 85 ~----~----------------------~~~~~LS~aaLEtLaiIay~qPiTR~eI~~irGv~---~~~~v~~L~e~ 132 (162)
T 1t6s_A 85 A----P----------------------VIQRRLSRSMLEVLAVVAWHQPVTKGEIQQIRGAS---PDYSIDRLLAR 132 (162)
T ss_dssp S----C----------------------HHHHHHHHHHHHHHHHHHHHCSEEHHHHHHHHTCC---CCSHHHHHHHT
T ss_pred c----c----------------------cccCccCHHHHHHHHHHHHcCCcCHHHHHHHHCCC---HHHHHHHHHHC
Confidence 1 1 11122222332 23333345899999999999999 44566666554
No 104
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=83.24 E-value=1.5 Score=30.15 Aligned_cols=29 Identities=17% Similarity=0.181 Sum_probs=26.6
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHh
Q psy6534 260 DKRSQKEIGDIAGVAEVTIRQSYKLMYPH 288 (309)
Q Consensus 260 ~~~~~~~ia~~~~vs~~ti~~~~kei~~~ 288 (309)
.+.+..|||+.+|++..|+++..+.|.+.
T Consensus 13 ~~~s~~eLa~~lgvs~~tv~r~L~~L~~~ 41 (81)
T 2htj_A 13 NGGKTAEIAEALAVTDYQARYYLLLLEKA 41 (81)
T ss_dssp CCCCHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 46899999999999999999999999865
No 105
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=83.17 E-value=1.4 Score=31.29 Aligned_cols=30 Identities=17% Similarity=0.245 Sum_probs=26.2
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHhh
Q psy6534 260 DKRSQKEIGDIAGVAEVTIRQSYKLMYPHA 289 (309)
Q Consensus 260 ~~~~~~~ia~~~~vs~~ti~~~~kei~~~~ 289 (309)
...+.+|||+.+|+|+.|+++..+.+++..
T Consensus 43 ~G~s~~eIA~~L~iS~~TV~~~~~~i~~Kl 72 (90)
T 3ulq_B 43 KGFTNQEIADALHLSKRSIEYSLTSIFNKL 72 (90)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHHHHHHHT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 346899999999999999999999987654
No 106
>3tqn_A Transcriptional regulator, GNTR family; regulatory functions; 2.80A {Coxiella burnetii}
Probab=83.11 E-value=1.1 Score=33.28 Aligned_cols=30 Identities=13% Similarity=0.266 Sum_probs=26.5
Q ss_pred CCCC-CHHHHHHHhCCCHHHHHHHHHHHHHh
Q psy6534 259 SDKR-SQKEIGDIAGVAEVTIRQSYKLMYPH 288 (309)
Q Consensus 259 ~~~~-~~~~ia~~~~vs~~ti~~~~kei~~~ 288 (309)
|.++ +..++|+.+|||..|++++|+.|...
T Consensus 30 G~~lPs~~~La~~~~vSr~tvr~al~~L~~~ 60 (113)
T 3tqn_A 30 GEMIPSIRKISTEYQINPLTVSKAYQSLLDD 60 (113)
T ss_dssp TCEECCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCcCcCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 3455 79999999999999999999999865
No 107
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=83.11 E-value=1.9 Score=34.10 Aligned_cols=31 Identities=6% Similarity=0.125 Sum_probs=28.2
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHHHHhh
Q psy6534 259 SDKRSQKEIGDIAGVAEVTIRQSYKLMYPHA 289 (309)
Q Consensus 259 ~~~~~~~~ia~~~~vs~~ti~~~~kei~~~~ 289 (309)
+-+++..+||+.+|+|+.|++++.+.|.+.-
T Consensus 15 ~~~~s~~~la~~lg~s~~tv~~rl~~L~~~g 45 (162)
T 3i4p_A 15 DSTLAVADLAKKVGLSTTPCWRRIQKMEEDG 45 (162)
T ss_dssp CSCSCHHHHHHHHTCCHHHHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence 4578999999999999999999999998764
No 108
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=83.07 E-value=1.8 Score=30.24 Aligned_cols=33 Identities=18% Similarity=0.170 Sum_probs=27.0
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHhhccc
Q psy6534 260 DKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKL 292 (309)
Q Consensus 260 ~~~~~~~ia~~~~vs~~ti~~~~kei~~~~~~l 292 (309)
...+.+|||+.+|+|+.|+++..........+.
T Consensus 37 ~~~s~~EIA~~lgis~~tV~~~~~ra~~kLr~~ 69 (87)
T 1tty_A 37 KPKTLEEVGQYFNVTRERIRQIEVKALRKLRHP 69 (87)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHHHHHHHHBTT
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 579999999999999999999887766554433
No 109
>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis}
Probab=82.85 E-value=3.5 Score=30.96 Aligned_cols=45 Identities=11% Similarity=0.079 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHh-CCCCCCHHHHHHHhCCCHHHHHHHHHHHHHhh
Q psy6534 245 SVAAAAIYMASQA-SSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHA 289 (309)
Q Consensus 245 ~iaaAaiyla~~~-~~~~~~~~~ia~~~~vs~~ti~~~~kei~~~~ 289 (309)
..|..++...++. .+.+++.++||+.+|++..++++..+.|.+.-
T Consensus 9 ~~al~iL~~la~~~~~~~~s~~ela~~~~i~~~~v~~il~~L~~~G 54 (129)
T 2y75_A 9 RYGLTIMIELAKKHGEGPTSLKSIAQTNNLSEHYLEQLVSPLRNAG 54 (129)
T ss_dssp HHHHHHHHHHHHTTTSCCBCHHHHHHHTTSCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCCCCCcCCHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence 3444444433333 35679999999999999999999999998753
No 110
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=82.66 E-value=0.9 Score=32.19 Aligned_cols=32 Identities=19% Similarity=0.151 Sum_probs=26.0
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHhhcc
Q psy6534 260 DKRSQKEIGDIAGVAEVTIRQSYKLMYPHASK 291 (309)
Q Consensus 260 ~~~~~~~ia~~~~vs~~ti~~~~kei~~~~~~ 291 (309)
...+.+|||+.+|+++.||+++.....+...+
T Consensus 52 ~g~s~~eIA~~lgis~~tV~~~l~ra~~~Lr~ 83 (92)
T 3hug_A 52 RGWSTAQIATDLGIAEGTVKSRLHYAVRALRL 83 (92)
T ss_dssp SCCCHHHHHHHHTSCHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 45799999999999999999888776655433
No 111
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=82.51 E-value=0.54 Score=29.09 Aligned_cols=6 Identities=50% Similarity=1.497 Sum_probs=3.3
Q ss_pred ecCCCC
Q psy6534 26 ICSECG 31 (309)
Q Consensus 26 vC~~CG 31 (309)
+|..||
T Consensus 32 ~CP~Cg 37 (46)
T 6rxn_A 32 CCPVCG 37 (46)
T ss_dssp BCTTTC
T ss_pred cCcCCC
Confidence 555555
No 112
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=82.49 E-value=0.93 Score=28.54 Aligned_cols=24 Identities=21% Similarity=0.326 Sum_probs=20.6
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHH
Q psy6534 260 DKRSQKEIGDIAGVAEVTIRQSYK 283 (309)
Q Consensus 260 ~~~~~~~ia~~~~vs~~ti~~~~k 283 (309)
...++++||+.+|+|..|+.+..+
T Consensus 30 ~g~s~~eIA~~lgis~~TV~~~l~ 53 (55)
T 2x48_A 30 MGYTVQQIANALGVSERKVRRYLE 53 (55)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHH
Confidence 346999999999999999988654
No 113
>2b0l_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, winged HTH motif.; 2.90A {Bacillus subtilis} SCOP: a.4.5.66
Probab=82.13 E-value=1.5 Score=32.00 Aligned_cols=29 Identities=14% Similarity=0.234 Sum_probs=26.0
Q ss_pred CCC-CHHHHHHHhCCCHHHHHHHHHHHHHh
Q psy6534 260 DKR-SQKEIGDIAGVAEVTIRQSYKLMYPH 288 (309)
Q Consensus 260 ~~~-~~~~ia~~~~vs~~ti~~~~kei~~~ 288 (309)
..+ +..++|+.+|||..||+++++.|...
T Consensus 41 ~~lps~~eLa~~lgVSr~tVr~al~~L~~~ 70 (102)
T 2b0l_A 41 EGLLVASKIADRVGITRSVIVNALRKLESA 70 (102)
T ss_dssp EEEECHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CcCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 345 89999999999999999999999875
No 114
>2kv1_A Methionine-R-sulfoxide reductase B1; MSRB1, SELR, metal-binding, nucleus, oxidoreductase, seleniu; NMR {Mus musculus}
Probab=81.85 E-value=0.93 Score=34.23 Aligned_cols=36 Identities=17% Similarity=0.529 Sum_probs=28.9
Q ss_pred eeeeC-CCCceecCCCCccc--cCcccccCCCcccccCC
Q psy6534 16 LIEDY-RAGDQICSECGLVV--GDRVIDVGSEWRTFSNE 51 (309)
Q Consensus 16 ~v~D~-~~G~~vC~~CG~V~--~e~~id~~~ewr~f~~~ 51 (309)
...|. +.|.++|..||.-| .+.-.|.|.-|.+|.+.
T Consensus 11 ~y~~~~e~G~Y~C~~Cg~pLF~S~~KfdSg~GWPSF~~~ 49 (124)
T 2kv1_A 11 VFQNHFEPGVYVCAKCSYELFSSHSKYAHSSPWPAFTET 49 (124)
T ss_dssp SGGGTTCCEEEEETTTCCBCCCTTSCCCCCSSSCCBSCC
T ss_pred cccCCCCCEEEEecCCCCcccccCCcccCCCCCceeecc
Confidence 44454 78999999999887 56678999999999653
No 115
>3lwf_A LIN1550 protein, putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG; HET: SO4; 2.06A {Listeria innocua}
Probab=81.77 E-value=2.6 Score=33.43 Aligned_cols=45 Identities=11% Similarity=0.070 Sum_probs=34.6
Q ss_pred HHHHHH-HHHHHHhCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHhh
Q psy6534 245 SVAAAA-IYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHA 289 (309)
Q Consensus 245 ~iaaAa-iyla~~~~~~~~~~~~ia~~~~vs~~ti~~~~kei~~~~ 289 (309)
.+|.-+ +|+|..-.+.+++.++||+..++++..+++....|.+.-
T Consensus 27 ~yAlr~L~~LA~~~~~~~~s~~eIA~~~~i~~~~l~kil~~L~~aG 72 (159)
T 3lwf_A 27 RYGLTITLELAKRIGDGPISLRSIAQDKNLSEHYLEQLIGPLRNAG 72 (159)
T ss_dssp HHHHHHHHHHHHTTTSCCBCHHHHHHHHTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence 344444 466654334579999999999999999999999998753
No 116
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=81.75 E-value=2.3 Score=28.70 Aligned_cols=31 Identities=10% Similarity=0.005 Sum_probs=26.5
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHhhc
Q psy6534 260 DKRSQKEIGDIAGVAEVTIRQSYKLMYPHAS 290 (309)
Q Consensus 260 ~~~~~~~ia~~~~vs~~ti~~~~kei~~~~~ 290 (309)
...+.+|||+.+|+++.|+++..+.+.+...
T Consensus 30 ~g~s~~eIA~~l~is~~tV~~~~~r~~~kl~ 60 (79)
T 1x3u_A 30 AGLPNKSIAYDLDISPRTVEVHRANVMAKMK 60 (79)
T ss_dssp TTCCHHHHHHHTTSCHHHHHHHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHHHHHHHHc
Confidence 4579999999999999999999888876543
No 117
>1gh9_A 8.3 kDa protein (gene MTH1184); beta+alpha complex structure, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: g.41.6.1
Probab=81.74 E-value=0.7 Score=31.44 Aligned_cols=28 Identities=29% Similarity=0.407 Sum_probs=22.0
Q ss_pred cccCCCCCCCCeeeeCCCCceecCCCCcccc
Q psy6534 5 KVCCYEHPDAPLIEDYRAGDQICSECGLVVG 35 (309)
Q Consensus 5 ~~~Cp~C~~~~~v~D~~~G~~vC~~CG~V~~ 35 (309)
...|| ||.. .+.|...-..-|. ||.++.
T Consensus 4 vv~C~-C~~~-~~~~~~~kT~~C~-CG~~~~ 31 (71)
T 1gh9_A 4 IFRCD-CGRA-LYSREGAKTRKCV-CGRTVN 31 (71)
T ss_dssp EEEET-TSCC-EEEETTCSEEEET-TTEEEE
T ss_pred EEECC-CCCE-EEEcCCCcEEECC-CCCeee
Confidence 35799 9876 5566677799999 999984
No 118
>1dxg_A Desulforedoxin; non-heme iron protein, rubredoxin type metal center, electron transport; 1.80A {Desulfovibrio gigas} SCOP: g.41.5.2 PDB: 1dcd_A 1dhg_A 1cfw_A 2lk5_A 2lk6_A
Probab=81.51 E-value=0.83 Score=26.59 Aligned_cols=26 Identities=19% Similarity=0.377 Sum_probs=14.5
Q ss_pred cccCCCCCCCCeeeeCCCCceecCCCCc
Q psy6534 5 KVCCYEHPDAPLIEDYRAGDQICSECGL 32 (309)
Q Consensus 5 ~~~Cp~C~~~~~v~D~~~G~~vC~~CG~ 32 (309)
-..|+.||..-.+.....|.++| ||.
T Consensus 6 fY~C~~CGnivev~~~g~~~l~C--CG~ 31 (36)
T 1dxg_A 6 VYKCELCGQVVKVLEEGGGTLVC--CGE 31 (36)
T ss_dssp EEECTTTCCEEEEEECCSSCEEE--TTE
T ss_pred EEEcCCCCcEEEEEeCCCcCEEe--CCc
Confidence 34678886532222345667777 553
No 119
>2w48_A Sorbitol operon regulator; SORC, activator, repressor, DNA-binding, transcription, transcription regulator, transcription regulation; 3.20A {Klebsiella pneumoniae}
Probab=81.46 E-value=1.9 Score=38.10 Aligned_cols=31 Identities=19% Similarity=0.150 Sum_probs=27.7
Q ss_pred CCCCCCHHHHHHHhCCCHHHHHHHHHHHHHh
Q psy6534 258 SSDKRSQKEIGDIAGVAEVTIRQSYKLMYPH 288 (309)
Q Consensus 258 ~~~~~~~~~ia~~~~vs~~ti~~~~kei~~~ 288 (309)
....++++|||+.+|||+.|||+-.+++.+.
T Consensus 18 ~~~~~~~~ela~~l~vS~~tIrRdL~~l~~~ 48 (315)
T 2w48_A 18 YEQDMTQAQIARELGIYRTTISRLLKRGREQ 48 (315)
T ss_dssp HTSCCCHHHHHHHTTCCHHHHHHHHHHHHHT
T ss_pred HcCCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 4566999999999999999999999998765
No 120
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=81.40 E-value=1.1 Score=31.78 Aligned_cols=30 Identities=10% Similarity=0.062 Sum_probs=26.8
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHhh
Q psy6534 260 DKRSQKEIGDIAGVAEVTIRQSYKLMYPHA 289 (309)
Q Consensus 260 ~~~~~~~ia~~~~vs~~ti~~~~kei~~~~ 289 (309)
-.++.+|+|+.++||+.|||+-..+|.+.-
T Consensus 15 g~vsv~eLA~~l~VS~~TIRrDL~~Le~~G 44 (87)
T 2k02_A 15 GRMEAKQLSARLQTPQPLIDAMLERMEAMG 44 (87)
T ss_dssp CSEEHHHHHHHTTCCHHHHHHHHHHHHTTC
T ss_pred CCCcHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence 468999999999999999999999987653
No 121
>4ich_A Transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, transcription RE; 1.95A {Saccharomonospora viridis}
Probab=81.33 E-value=1.3 Score=38.78 Aligned_cols=108 Identities=11% Similarity=0.103 Sum_probs=28.4
Q ss_pred CccHHHHHHHhcccHHHHHHHHHHHHHHhcccCCCCChHHHHHHHHhhCCCCHHHHHH----HHHHHHH---hhh-----
Q psy6534 167 PRTFKEICAVSKISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKA----ATHIARK---AVE----- 234 (309)
Q Consensus 167 ~~tl~eia~~~~~~~~~i~~~~~~l~~~l~~~~~~~~p~~~i~~~~~~L~l~~~~~~~----a~~i~~~---~~~----- 234 (309)
..|..++|+.+|++...|.+..+- ...| ..+.+.++++.||++....-. +...... ...
T Consensus 43 g~t~~~la~~~g~s~~~is~~e~g------~~~p---~~~~l~~ia~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 113 (311)
T 4ich_A 43 PGAQREFAAAIGLDESKLSKSLNG------TRRF---SPHELVRIAEHSGVTVNWLINGRDDARTVAAVPAPTARSRSAP 113 (311)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCHHHHHHHhCCCHHHHHHHHcC------CCCC---CHHHHHHHHHHHCCChhhhhcCCCccccccCCCCcccccCCCC
Confidence 567788888888887777665431 1111 123455666666654321100 0000000 000
Q ss_pred cCccCCCChHHHHHHHHHHHHHhCCC-CCCHHHHHHHhCCCHHHHHHHHHH
Q psy6534 235 LDIVPGRSPISVAAAAIYMASQASSD-KRSQKEIGDIAGVAEVTIRQSYKL 284 (309)
Q Consensus 235 ~~l~~Gr~P~~iaaAaiyla~~~~~~-~~~~~~ia~~~~vs~~ti~~~~ke 284 (309)
..-.....-..|..|++-+..+ .|+ ..|.++||+.+||+..||-..|+.
T Consensus 114 ~~~~~~~~r~~il~aa~~l~~~-~G~~~~T~~~IA~~AGvs~gtlY~yF~s 163 (311)
T 4ich_A 114 AGEPQSEARRRILETAWRLIAR-RGYHNVRIHDIASELGTSNATIHYHFPS 163 (311)
T ss_dssp ---CCHHHHHHHHHHHHHHHHH-HCGGGCCHHHHHHHHTCCHHHHHHHCSS
T ss_pred CccchhhHHHHHHHHHHHHHHH-cCCccCCHHHHHHHhCCCchhHHHhCCC
Confidence 0000000112344444443333 254 589999999999999999887743
No 122
>1tfi_A Transcriptional elongation factor SII; transcription regulation; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=81.26 E-value=1.2 Score=27.97 Aligned_cols=29 Identities=17% Similarity=0.237 Sum_probs=18.9
Q ss_pred cccCCCCCCCCeee-e--------CCCCceecCCCCcc
Q psy6534 5 KVCCYEHPDAPLIE-D--------YRAGDQICSECGLV 33 (309)
Q Consensus 5 ~~~Cp~C~~~~~v~-D--------~~~G~~vC~~CG~V 33 (309)
...||.||....++ . +.+=-++|.+||..
T Consensus 9 ~~~Cp~Cg~~~a~f~q~Q~RsaDE~mT~Fy~C~~Cg~~ 46 (50)
T 1tfi_A 9 LFTCGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNR 46 (50)
T ss_dssp CSCCSSSCSSCEEEEEECSSSSSSCCEEEEEESSSCCE
T ss_pred ccCCCCCCCCEEEEEEecCcCCCCCceEEEEcCCCCCe
Confidence 35799999876542 1 12224799999963
No 123
>3by6_A Predicted transcriptional regulator; structural genomics, PSI-2, MCSG, structure initiative, midwest center for structural genomic binding; 2.20A {Oenococcus oeni}
Probab=81.16 E-value=1.4 Score=33.46 Aligned_cols=29 Identities=21% Similarity=0.248 Sum_probs=26.0
Q ss_pred CCC-CHHHHHHHhCCCHHHHHHHHHHHHHh
Q psy6534 260 DKR-SQKEIGDIAGVAEVTIRQSYKLMYPH 288 (309)
Q Consensus 260 ~~~-~~~~ia~~~~vs~~ti~~~~kei~~~ 288 (309)
.++ +..++|+.+|||..|++++++.|...
T Consensus 33 ~~lPse~~La~~~~vSr~tvr~Al~~L~~~ 62 (126)
T 3by6_A 33 DQLPSVRETALQEKINPNTVAKAYKELEAQ 62 (126)
T ss_dssp CEECCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CcCcCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 456 89999999999999999999999765
No 124
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=81.03 E-value=5.7 Score=33.06 Aligned_cols=29 Identities=34% Similarity=0.426 Sum_probs=27.0
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHh
Q psy6534 260 DKRSQKEIGDIAGVAEVTIRQSYKLMYPH 288 (309)
Q Consensus 260 ~~~~~~~ia~~~~vs~~ti~~~~kei~~~ 288 (309)
.++|+++||+.+|+|+.|+.+..++|.+.
T Consensus 176 ~~~t~~~iA~~lG~sr~tvsR~l~~L~~~ 204 (250)
T 3e6c_C 176 MPLSQKSIGEITGVHHVTVSRVLASLKRE 204 (250)
T ss_dssp CCCCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHhCCcHHHHHHHHHHHHHC
Confidence 57899999999999999999999999875
No 125
>2l8n_A Transcriptional repressor CYTR; bacterial gene repressor, helix turn helix binding domain, L family, transcription regulation, binding protein; NMR {Escherichia coli} PDB: 2lcv_A
Probab=81.03 E-value=0.79 Score=30.75 Aligned_cols=22 Identities=18% Similarity=0.255 Sum_probs=19.6
Q ss_pred CCCHHHHHHHhCCCHHHHHHHH
Q psy6534 261 KRSQKEIGDIAGVAEVTIRQSY 282 (309)
Q Consensus 261 ~~~~~~ia~~~~vs~~ti~~~~ 282 (309)
.++++|||+.+|||..|+.+.+
T Consensus 9 ~~t~~diA~~aGVS~sTVSr~l 30 (67)
T 2l8n_A 9 AATMKDVALKAKVSTATVSRAL 30 (67)
T ss_dssp CCCHHHHHHHTTCCHHHHHHTT
T ss_pred CCCHHHHHHHHCCCHHHHHHHH
Confidence 4799999999999999998765
No 126
>2ek5_A Predicted transcriptional regulators; helix-turn-helix, interwined alpha helices; 2.20A {Corynebacterium glutamicum atcc 13032} PDB: 2du9_A
Probab=80.85 E-value=1.6 Score=33.19 Aligned_cols=30 Identities=17% Similarity=0.283 Sum_probs=26.5
Q ss_pred CCCC-CHHHHHHHhCCCHHHHHHHHHHHHHh
Q psy6534 259 SDKR-SQKEIGDIAGVAEVTIRQSYKLMYPH 288 (309)
Q Consensus 259 ~~~~-~~~~ia~~~~vs~~ti~~~~kei~~~ 288 (309)
|.++ +.+++|+.+|||..|++++++.|...
T Consensus 25 G~~LPse~~La~~~gvSr~tVr~Al~~L~~~ 55 (129)
T 2ek5_A 25 DQRVPSTNELAAFHRINPATARNGLTLLVEA 55 (129)
T ss_dssp TSCBCCHHHHHHHTTCCHHHHHHHHHHHHTT
T ss_pred CCcCcCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 4566 79999999999999999999999754
No 127
>3iwf_A Transcription regulator RPIR family; transcriptional, N-terminal, PSI, MCSG, structural genomics, midwest center structural genomics; 1.40A {Staphylococcus epidermidis}
Probab=80.76 E-value=5.8 Score=29.07 Aligned_cols=26 Identities=15% Similarity=0.135 Sum_probs=21.8
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHH
Q psy6534 260 DKRSQKEIGDIAGVAEVTIRQSYKLM 285 (309)
Q Consensus 260 ~~~~~~~ia~~~~vs~~ti~~~~kei 285 (309)
...+..++|+.+|||+.||-+..|.|
T Consensus 34 ~~~si~elA~~~~vS~aTv~Rf~kkL 59 (107)
T 3iwf_A 34 VNMTSQEIANQLETSSTSIIRLSKKV 59 (107)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHCCHHHHHHHHCCCHHHHHHHHHHh
Confidence 35789999999999999998776554
No 128
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=80.74 E-value=2.1 Score=30.53 Aligned_cols=31 Identities=19% Similarity=0.220 Sum_probs=26.5
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHhhc
Q psy6534 260 DKRSQKEIGDIAGVAEVTIRQSYKLMYPHAS 290 (309)
Q Consensus 260 ~~~~~~~ia~~~~vs~~ti~~~~kei~~~~~ 290 (309)
...+.+|||+.+|+|+.||++..+.+.+...
T Consensus 41 ~g~s~~eIA~~l~is~~tV~~~l~r~~~kL~ 71 (95)
T 3c57_A 41 EGLTNKQIADRMFLAEKTVKNYVSRLLAKLG 71 (95)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHHHHHHHHT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHHHHHHHHc
Confidence 3468899999999999999999888876654
No 129
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=80.65 E-value=3.3 Score=27.46 Aligned_cols=32 Identities=16% Similarity=0.321 Sum_probs=27.6
Q ss_pred HhcCCCccHHHHHHHhcccHHHHHHHHHHHHH
Q psy6534 162 RQEGVPRTFKEICAVSKISKKEIGRCFKLILK 193 (309)
Q Consensus 162 R~~~~~~tl~eia~~~~~~~~~i~~~~~~l~~ 193 (309)
+.++-|++..|||+.++++...+.+.++.|.+
T Consensus 20 ~~~~~~~s~~eLA~~lglsr~tv~~~l~~L~~ 51 (67)
T 2heo_A 20 SDDGGPVAIFQLVKKCQVPKKTLNQVLYRLKK 51 (67)
T ss_dssp HHHCSCEEHHHHHHHHCSCHHHHHHHHHHHHH
T ss_pred HHcCCCcCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 34667899999999999999999988888765
No 130
>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=80.64 E-value=1.1 Score=33.54 Aligned_cols=29 Identities=14% Similarity=0.166 Sum_probs=19.8
Q ss_pred ccCCCCCCCCeeeeCC----CCceecCCCCcccc
Q psy6534 6 VCCYEHPDAPLIEDYR----AGDQICSECGLVVG 35 (309)
Q Consensus 6 ~~Cp~C~~~~~v~D~~----~G~~vC~~CG~V~~ 35 (309)
.-||.||+-- +.... .-..+|..||++..
T Consensus 5 ~FCp~Cgn~L-~~~~~~~~~~~~~~C~~C~y~~~ 37 (113)
T 3h0g_I 5 QYCIECNNML-YPREDKVDRVLRLACRNCDYSEI 37 (113)
T ss_dssp CCCSSSCCCC-EECCCTTTCCCCEECSSSCCEEC
T ss_pred eeCcCCCCEe-eEcccCCCCeeEEECCCCCCeEE
Confidence 4699998753 33222 22699999999763
No 131
>2p5k_A Arginine repressor; DNA-binding domain, winged helix-turn-helix (WHTH), DNA binding protein; 1.00A {Bacillus subtilis} SCOP: a.4.5.3 PDB: 2p5l_C*
Probab=79.98 E-value=3.4 Score=26.56 Aligned_cols=27 Identities=22% Similarity=0.375 Sum_probs=23.8
Q ss_pred CCCCCHHHHHHHh-----CCCHHHHHHHHHHH
Q psy6534 259 SDKRSQKEIGDIA-----GVAEVTIRQSYKLM 285 (309)
Q Consensus 259 ~~~~~~~~ia~~~-----~vs~~ti~~~~kei 285 (309)
+..++..||++.+ +||..||.+..+++
T Consensus 17 ~~~~t~~el~~~l~~~~~~vs~~Tv~R~L~~l 48 (64)
T 2p5k_A 17 NEIETQDELVDMLKQDGYKVTQATVSRDIKEL 48 (64)
T ss_dssp SCCCSHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhCCCcCHHHHHHHHHHc
Confidence 4579999999999 99999999888855
No 132
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=79.92 E-value=2.3 Score=30.93 Aligned_cols=32 Identities=13% Similarity=0.265 Sum_probs=28.5
Q ss_pred CCCCCCHHHHHHHhCCCHHHHHHHHHHHHHhh
Q psy6534 258 SSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHA 289 (309)
Q Consensus 258 ~~~~~~~~~ia~~~~vs~~ti~~~~kei~~~~ 289 (309)
.|.+++..+||+.+|+|.+|++++++.|.+.-
T Consensus 30 ~g~~~s~~eLa~~lgvs~~tV~~~L~~L~~~G 61 (110)
T 1q1h_A 30 KGTEMTDEEIANQLNIKVNDVRKKLNLLEEQG 61 (110)
T ss_dssp HCSCBCHHHHHHTTTSCHHHHHHHHHHHHHHT
T ss_pred cCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence 46578999999999999999999999998763
No 133
>3lwf_A LIN1550 protein, putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG; HET: SO4; 2.06A {Listeria innocua}
Probab=79.75 E-value=3.9 Score=32.35 Aligned_cols=46 Identities=15% Similarity=0.120 Sum_probs=38.2
Q ss_pred hhHHHHHHHHHHHHhcCCCccHHHHHHHhcccHHHHHHHHHHHHHH
Q psy6534 149 NDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGRCFKLILKA 194 (309)
Q Consensus 149 ~~~vaaAcly~acR~~~~~~tl~eia~~~~~~~~~i~~~~~~l~~~ 194 (309)
.+.-+-+.+|+|.+..+.|.+.++||+..+++..-+.+.+..|.+.
T Consensus 26 ~~yAlr~L~~LA~~~~~~~~s~~eIA~~~~i~~~~l~kil~~L~~a 71 (159)
T 3lwf_A 26 GRYGLTITLELAKRIGDGPISLRSIAQDKNLSEHYLEQLIGPLRNA 71 (159)
T ss_dssp HHHHHHHHHHHHHTTTSCCBCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 3455567788887666678999999999999999999999988764
No 134
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=79.65 E-value=0.95 Score=29.01 Aligned_cols=11 Identities=27% Similarity=0.878 Sum_probs=5.1
Q ss_pred eecCCCCcccc
Q psy6534 25 QICSECGLVVG 35 (309)
Q Consensus 25 ~vC~~CG~V~~ 35 (309)
.+|..||+|.+
T Consensus 4 y~C~vCGyvYd 14 (54)
T 4rxn_A 4 YTCTVCGYIYD 14 (54)
T ss_dssp EEETTTCCEEC
T ss_pred eECCCCCeEEC
Confidence 34444444443
No 135
>2z99_A Putative uncharacterized protein; winged helix domain, cell cycle, cell division, chromosome partition, cytoplasm; 2.30A {Mycobacterium tuberculosis}
Probab=79.58 E-value=25 Score=29.26 Aligned_cols=43 Identities=16% Similarity=0.232 Sum_probs=36.6
Q ss_pred hhHHHHHHHHHHHHhcCCCccHHHHHHHhcccHHHHHHHHHHHHHHh
Q psy6534 149 NDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGRCFKLILKAL 195 (309)
Q Consensus 149 ~~~vaaAcly~acR~~~~~~tl~eia~~~~~~~~~i~~~~~~l~~~l 195 (309)
...++=|.||++ +-|+++.+++.+++++..++...+..|....
T Consensus 16 l~~~iEAlLf~a----~epvs~~~La~~l~~~~~~v~~~l~~L~~~y 58 (219)
T 2z99_A 16 LKRVLEALLLVI----DTPVTADALAAATEQPVYRVAAKLQLMADEL 58 (219)
T ss_dssp HHHHHHHHHHHC----SSCBCHHHHHHHHTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc----CCCCCHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 346777888876 7799999999999999999999988888766
No 136
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=79.49 E-value=3.1 Score=31.16 Aligned_cols=38 Identities=11% Similarity=0.127 Sum_probs=30.8
Q ss_pred HHHHHHhCCCC-CCHHHHHHHhCCCHHHHHHHHHHHHHh
Q psy6534 251 IYMASQASSDK-RSQKEIGDIAGVAEVTIRQSYKLMYPH 288 (309)
Q Consensus 251 iyla~~~~~~~-~~~~~ia~~~~vs~~ti~~~~kei~~~ 288 (309)
||.+....+.+ +++.+||+.++++.+|+.+..+.|.+.
T Consensus 31 il~~L~~~~~~~~t~~eLa~~l~~s~sTV~r~L~~L~~~ 69 (123)
T 3r0a_A 31 VMKSFLNEPDRWIDTDALSKSLKLDVSTVQRSVKKLHEK 69 (123)
T ss_dssp HHHHHHHSTTCCEEHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 44444445556 899999999999999999999999865
No 137
>3o9x_A Uncharacterized HTH-type transcriptional regulato; HTH-XRE DNA binding motif, transcriptional regulator, bacter antitoxin, Zn binding protein, transcription regulator-DNA; HET: DNA; 2.10A {Escherichia coli} PDB: 3gn5_A* 3gn5_B* 2kz8_A
Probab=79.23 E-value=0.83 Score=34.73 Aligned_cols=33 Identities=12% Similarity=0.322 Sum_probs=0.0
Q ss_pred CcccCCCCCCCCeeeeC-------------CCC--ceecCCCCccccC
Q psy6534 4 NKVCCYEHPDAPLIEDY-------------RAG--DQICSECGLVVGD 36 (309)
Q Consensus 4 ~~~~Cp~C~~~~~v~D~-------------~~G--~~vC~~CG~V~~e 36 (309)
..|.||.||+..++.+. ..+ -.+|..||-++-+
T Consensus 1 ~~M~Cp~Cg~~~~~~~~~~~~~~~kg~~~~v~~v~~~~C~~CGE~~~d 48 (133)
T 3o9x_A 1 GHMKCPVCHQGEMVSGIKDIPYTFRGRKTVLKGIHGLYCVHCEESIMN 48 (133)
T ss_dssp -CCBCTTTSSSBEEEEEEEEEEEETTEEEEEEEEEEEEESSSSCEECC
T ss_pred CCcCCCcCCCCceeeceEEEEEEECCEEEEECCCceeECCCCCCEeec
No 138
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=78.92 E-value=3.4 Score=31.83 Aligned_cols=31 Identities=19% Similarity=0.164 Sum_probs=27.8
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHHHHhh
Q psy6534 259 SDKRSQKEIGDIAGVAEVTIRQSYKLMYPHA 289 (309)
Q Consensus 259 ~~~~~~~~ia~~~~vs~~ti~~~~kei~~~~ 289 (309)
+.+.+..+||+.+|+|+.|++++.+.|.+.-
T Consensus 15 ~~~~~~~ela~~lg~s~~tv~~~l~~L~~~G 45 (150)
T 2pn6_A 15 NAKYSLDEIAREIRIPKATLSYRIKKLEKDG 45 (150)
T ss_dssp CTTSCHHHHHHHHTSCHHHHHHHHHHHHHTT
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence 4478999999999999999999999998764
No 139
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=78.83 E-value=2.2 Score=29.80 Aligned_cols=27 Identities=0% Similarity=0.019 Sum_probs=25.1
Q ss_pred CCHHHHHHHhCCCHHHHHHHHHHHHHh
Q psy6534 262 RSQKEIGDIAGVAEVTIRQSYKLMYPH 288 (309)
Q Consensus 262 ~~~~~ia~~~~vs~~ti~~~~kei~~~ 288 (309)
.+..|||+.+|++..+++++.+.|.+.
T Consensus 31 ~sa~eLAk~LgiSk~aVr~~L~~Le~e 57 (82)
T 1oyi_A 31 ATAAQLTRQLNMEKREVNKALYDLQRS 57 (82)
T ss_dssp EEHHHHHHHSSSCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 889999999999999999999999764
No 140
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=78.78 E-value=2.9 Score=32.37 Aligned_cols=30 Identities=13% Similarity=0.214 Sum_probs=27.3
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHHHHh
Q psy6534 259 SDKRSQKEIGDIAGVAEVTIRQSYKLMYPH 288 (309)
Q Consensus 259 ~~~~~~~~ia~~~~vs~~ti~~~~kei~~~ 288 (309)
+-+.+..+||+.+|+|+.|++++.+.|.+.
T Consensus 21 ~~~~s~~ela~~lg~s~~tv~~~l~~L~~~ 50 (151)
T 2dbb_A 21 NSRLTYRELADILNTTRQRIARRIDKLKKL 50 (151)
T ss_dssp CTTCCHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 457899999999999999999999999865
No 141
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=78.75 E-value=3 Score=32.35 Aligned_cols=31 Identities=19% Similarity=0.207 Sum_probs=27.7
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHHHHhh
Q psy6534 259 SDKRSQKEIGDIAGVAEVTIRQSYKLMYPHA 289 (309)
Q Consensus 259 ~~~~~~~~ia~~~~vs~~ti~~~~kei~~~~ 289 (309)
+-+.+..+||+.+|+|+.|++++.+.|.+.-
T Consensus 20 ~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G 50 (152)
T 2cg4_A 20 NARTAYAELAKQFGVSPETIHVRVEKMKQAG 50 (152)
T ss_dssp CTTSCHHHHHHHHTSCHHHHHHHHHHHHHHT
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHHHHHcC
Confidence 3578999999999999999999999998653
No 142
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=78.64 E-value=3 Score=32.05 Aligned_cols=30 Identities=10% Similarity=0.235 Sum_probs=27.2
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHHHHh
Q psy6534 259 SDKRSQKEIGDIAGVAEVTIRQSYKLMYPH 288 (309)
Q Consensus 259 ~~~~~~~~ia~~~~vs~~ti~~~~kei~~~ 288 (309)
+-+.+..+||+.+|+|+.|++++.+.|.+.
T Consensus 17 ~~~~s~~ela~~lg~s~~tv~~~l~~L~~~ 46 (144)
T 2cfx_A 17 DSRLSMRELGRKIKLSPPSVTERVRQLESF 46 (144)
T ss_dssp CSCCCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 356899999999999999999999999765
No 143
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=78.57 E-value=0.97 Score=28.73 Aligned_cols=13 Identities=23% Similarity=0.595 Sum_probs=7.9
Q ss_pred ceecCCCCccccC
Q psy6534 24 DQICSECGLVVGD 36 (309)
Q Consensus 24 ~~vC~~CG~V~~e 36 (309)
..+|+.||+|.++
T Consensus 3 ~y~C~~CGyvYd~ 15 (52)
T 1e8j_A 3 IYVCTVCGYEYDP 15 (52)
T ss_dssp CEECSSSCCCCCT
T ss_pred cEEeCCCCeEEcC
Confidence 3566667766653
No 144
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=78.52 E-value=5.8 Score=28.29 Aligned_cols=34 Identities=3% Similarity=0.030 Sum_probs=28.1
Q ss_pred HHHHHhCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q psy6534 252 YMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLM 285 (309)
Q Consensus 252 yla~~~~~~~~~~~~ia~~~~vs~~ti~~~~kei 285 (309)
|+-......++++.++|+.+|+|+.++.+.+++.
T Consensus 10 ~i~~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~~ 43 (103)
T 3lsg_A 10 IIEESYTDSQFTLSVLSEKLDLSSGYLSIMFKKN 43 (103)
T ss_dssp HHHHHTTCTTCCHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHccCCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 4554444458999999999999999999999886
No 145
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=78.13 E-value=3 Score=33.33 Aligned_cols=30 Identities=30% Similarity=0.446 Sum_probs=27.4
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHhh
Q psy6534 260 DKRSQKEIGDIAGVAEVTIRQSYKLMYPHA 289 (309)
Q Consensus 260 ~~~~~~~ia~~~~vs~~ti~~~~kei~~~~ 289 (309)
-+.+..|||+.+|+|+.|++++.+.|.+.-
T Consensus 40 ~~~s~~eLA~~lglS~~tv~~rl~~L~~~G 69 (171)
T 2e1c_A 40 GKAPLREISKITGLAESTIHERIRKLRESG 69 (171)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence 478999999999999999999999998763
No 146
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=78.08 E-value=3.2 Score=32.17 Aligned_cols=31 Identities=29% Similarity=0.437 Sum_probs=27.7
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHHHHhh
Q psy6534 259 SDKRSQKEIGDIAGVAEVTIRQSYKLMYPHA 289 (309)
Q Consensus 259 ~~~~~~~~ia~~~~vs~~ti~~~~kei~~~~ 289 (309)
+-+.+..+||+.+|+|+.|++++.+.|.+.-
T Consensus 19 ~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G 49 (151)
T 2cyy_A 19 DGKAPLREISKITGLAESTIHERIRKLRESG 49 (151)
T ss_dssp CTTCCHHHHHHHHCSCHHHHHHHHHHHHHHT
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence 3478999999999999999999999998753
No 147
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=77.87 E-value=4.3 Score=27.92 Aligned_cols=30 Identities=13% Similarity=0.278 Sum_probs=25.9
Q ss_pred CCCccHHHHHHHhcccHHHHHHHHHHHHHH
Q psy6534 165 GVPRTFKEICAVSKISKKEIGRCFKLILKA 194 (309)
Q Consensus 165 ~~~~tl~eia~~~~~~~~~i~~~~~~l~~~ 194 (309)
|.|.|.+|||+.++++...+.+.+..|.+.
T Consensus 22 g~~psv~EIa~~lgvS~~TVrr~L~~Le~k 51 (77)
T 2jt1_A 22 GAPVKTRDIADAAGLSIYQVRLYLEQLHDV 51 (77)
T ss_dssp TSCEEHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCCcCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 789999999999999988888877777653
No 148
>3t8r_A Staphylococcus aureus CYMR; transcriptional regulator protein, dimer, sulfenic acid, UNK function; 1.70A {Staphylococcus aureus} PDB: 3t8t_A
Probab=77.71 E-value=2.4 Score=32.78 Aligned_cols=44 Identities=14% Similarity=0.121 Sum_probs=33.5
Q ss_pred HHHH-HHHHHHHhCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHhh
Q psy6534 246 VAAA-AIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHA 289 (309)
Q Consensus 246 iaaA-aiyla~~~~~~~~~~~~ia~~~~vs~~ti~~~~kei~~~~ 289 (309)
+|.- .+|+|..-.+.+++.++||+..++++..+++....|.+.-
T Consensus 12 yAl~~L~~La~~~~~~~~s~~~IA~~~~i~~~~l~kil~~L~~aG 56 (143)
T 3t8r_A 12 YGLTLMISLAKKEGQGCISLKSIAEENNLSDLYLEQLVGPLRNAG 56 (143)
T ss_dssp HHHHHHHHHHTTTTSCCEEHHHHHHHTTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhCCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence 4443 3456654333579999999999999999999999998753
No 149
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Probab=77.53 E-value=6.1 Score=32.84 Aligned_cols=31 Identities=19% Similarity=0.200 Sum_probs=27.7
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHHHHhh
Q psy6534 259 SDKRSQKEIGDIAGVAEVTIRQSYKLMYPHA 289 (309)
Q Consensus 259 ~~~~~~~~ia~~~~vs~~ti~~~~kei~~~~ 289 (309)
..++++++||+.+|+++.|+.+..++|.+.-
T Consensus 191 ~~~lt~~~lA~~lG~sr~tvsR~l~~L~~~G 221 (243)
T 3la7_A 191 DLKLSHQAIAEAIGSTRVTVTRLLGDLREKK 221 (243)
T ss_dssp CSCCCHHHHHHHHTCCHHHHHHHHHHHHHTT
T ss_pred eccCCHHHHHHHHCCcHHHHHHHHHHHHHCC
Confidence 3578999999999999999999999998653
No 150
>2k9s_A Arabinose operon regulatory protein; activator, arabinose catabolism, carbohydrate metabolism, cytoplasm, DNA-binding, repressor, transcription; NMR {Escherichia coli}
Probab=77.43 E-value=4.5 Score=29.16 Aligned_cols=39 Identities=5% Similarity=0.164 Sum_probs=29.9
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q psy6534 247 AAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLM 285 (309)
Q Consensus 247 aaAaiyla~~~~~~~~~~~~ia~~~~vs~~ti~~~~kei 285 (309)
.-+.-|+-....+.++++.++|+.+|+|+.++.+.+++.
T Consensus 6 ~~~~~~i~~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~~ 44 (107)
T 2k9s_A 6 REACQYISDHLADSNFDIASVAQHVCLSPSRLSHLFRQQ 44 (107)
T ss_dssp HHHHHHHHHTSSCSSCCHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 334445554444478999999999999999999999875
No 151
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=77.40 E-value=3.5 Score=31.33 Aligned_cols=30 Identities=20% Similarity=0.347 Sum_probs=27.2
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHHHHh
Q psy6534 259 SDKRSQKEIGDIAGVAEVTIRQSYKLMYPH 288 (309)
Q Consensus 259 ~~~~~~~~ia~~~~vs~~ti~~~~kei~~~ 288 (309)
+-+.+..+||+.+|+|+.|++++.+.|.+.
T Consensus 16 ~~~~~~~ela~~lg~s~~tv~~~l~~L~~~ 45 (141)
T 1i1g_A 16 DARTPFTEIAKKLGISETAVRKRVKALEEK 45 (141)
T ss_dssp CTTCCHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 456899999999999999999999999865
No 152
>3mn2_A Probable ARAC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=77.14 E-value=6.5 Score=28.27 Aligned_cols=36 Identities=8% Similarity=0.208 Sum_probs=28.7
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q psy6534 249 AAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLM 285 (309)
Q Consensus 249 Aaiyla~~~~~~~~~~~~ia~~~~vs~~ti~~~~kei 285 (309)
+.-|+.... ..++++.++|+.+|+|+.++.+.+++.
T Consensus 7 ~~~~i~~~~-~~~~~~~~lA~~~~~s~~~l~r~fk~~ 42 (108)
T 3mn2_A 7 VEEYIEANW-MRPITIEKLTALTGISSRGIFKAFQRS 42 (108)
T ss_dssp HHHHHHHHT-TSCCCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHcc-cCCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 334554444 456999999999999999999999986
No 153
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=77.13 E-value=3 Score=30.15 Aligned_cols=29 Identities=17% Similarity=-0.062 Sum_probs=25.0
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHHhh
Q psy6534 261 KRSQKEIGDIAGVAEVTIRQSYKLMYPHA 289 (309)
Q Consensus 261 ~~~~~~ia~~~~vs~~ti~~~~kei~~~~ 289 (309)
..+.+|||+.+|+|+.|++...+.+.+..
T Consensus 49 G~s~~EIA~~L~iS~~TV~~~l~ri~~KL 77 (99)
T 1p4w_A 49 GFLVTEIAKKLNRSIKTISSQKKSAMMKL 77 (99)
T ss_dssp TCCHHHHHHHHTSCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 46889999999999999999888877653
No 154
>3u50_C Telomerase-associated protein 82; TEB1, processivity factor, DNA BIND protein; 2.50A {Tetrahymena thermophila}
Probab=77.10 E-value=1.3 Score=35.68 Aligned_cols=26 Identities=15% Similarity=0.493 Sum_probs=21.1
Q ss_pred ccCCCCCCCCeeeeCCCCceecCCCCcc
Q psy6534 6 VCCYEHPDAPLIEDYRAGDQICSECGLV 33 (309)
Q Consensus 6 ~~Cp~C~~~~~v~D~~~G~~vC~~CG~V 33 (309)
..||.|++. ++ +...|...|..||..
T Consensus 43 ~ACp~CnKK-V~-~~~~g~~~CekC~~~ 68 (172)
T 3u50_C 43 YRCTCQGKS-VL-KYHGDSFFCESCQQF 68 (172)
T ss_dssp EECTTSCCC-EE-EETTTEEEETTTTEE
T ss_pred hhchhhCCE-ee-eCCCCeEECCCCCCC
Confidence 369999764 44 667899999999987
No 155
>1j5y_A Transcriptional regulator, biotin repressor famil; structural genomics, TM1602, BIOT repressor family, JCSG, conserved hypothetical protein; 2.30A {Thermotoga maritima} SCOP: a.4.5.1 d.94.2.1
Probab=77.03 E-value=4.2 Score=32.85 Aligned_cols=30 Identities=13% Similarity=0.138 Sum_probs=27.1
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHHHHh
Q psy6534 259 SDKRSQKEIGDIAGVAEVTIRQSYKLMYPH 288 (309)
Q Consensus 259 ~~~~~~~~ia~~~~vs~~ti~~~~kei~~~ 288 (309)
+.+++.+++|+.+|||+.||++..+.|.+.
T Consensus 34 ~~~~s~~eLa~~l~vS~~Ti~rdi~~L~~~ 63 (187)
T 1j5y_A 34 KEPVSGAQLAEELSVSRQVIVQDIAYLRSL 63 (187)
T ss_dssp SSCBCHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 456899999999999999999999999874
No 156
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=76.97 E-value=5.4 Score=32.24 Aligned_cols=29 Identities=14% Similarity=0.143 Sum_probs=27.1
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHh
Q psy6534 260 DKRSQKEIGDIAGVAEVTIRQSYKLMYPH 288 (309)
Q Consensus 260 ~~~~~~~ia~~~~vs~~ti~~~~kei~~~ 288 (309)
.++|+++||+.+|+++.|+.+..++|.+.
T Consensus 168 ~~~t~~~lA~~lg~sr~tvsR~l~~L~~~ 196 (220)
T 3dv8_A 168 LKITHETIANHLGSHREVITRMLRYFQVE 196 (220)
T ss_dssp ECCCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred ecCCHHHHHHHhCCCHHHHHHHHHHHHHC
Confidence 57899999999999999999999999875
No 157
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=76.92 E-value=2.1 Score=30.12 Aligned_cols=31 Identities=13% Similarity=0.168 Sum_probs=26.2
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHhhc
Q psy6534 260 DKRSQKEIGDIAGVAEVTIRQSYKLMYPHAS 290 (309)
Q Consensus 260 ~~~~~~~ia~~~~vs~~ti~~~~kei~~~~~ 290 (309)
...+.+|||+.+|+|+.|+++..+.+.+...
T Consensus 43 ~g~s~~eIA~~l~is~~tV~~~l~r~~~kL~ 73 (91)
T 2rnj_A 43 KGYSNQEIASASHITIKTVKTHVSNILSKLE 73 (91)
T ss_dssp TTCCTTHHHHHHTCCHHHHHHHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHHHHHHHHC
Confidence 3478889999999999999999988876643
No 158
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A
Probab=76.78 E-value=4.8 Score=32.13 Aligned_cols=30 Identities=13% Similarity=0.125 Sum_probs=27.2
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHhh
Q psy6534 260 DKRSQKEIGDIAGVAEVTIRQSYKLMYPHA 289 (309)
Q Consensus 260 ~~~~~~~ia~~~~vs~~ti~~~~kei~~~~ 289 (309)
.++|+++||+.+|+|+.|+.+..++|.+.-
T Consensus 138 ~~~t~~~lA~~lg~sr~tvsR~l~~L~~~g 167 (195)
T 3b02_A 138 VTVSHEEIADATASIRESVSKVLADLRREG 167 (195)
T ss_dssp EECCHHHHHHTTTSCHHHHHHHHHHHHHHT
T ss_pred ccCCHHHHHHHhCCCHHHHHHHHHHHHHCC
Confidence 578999999999999999999999998653
No 159
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=76.69 E-value=3 Score=29.68 Aligned_cols=30 Identities=20% Similarity=0.297 Sum_probs=27.2
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHHHHh
Q psy6534 259 SDKRSQKEIGDIAGVAEVTIRQSYKLMYPH 288 (309)
Q Consensus 259 ~~~~~~~~ia~~~~vs~~ti~~~~kei~~~ 288 (309)
+.++++.|||+.+|++..|+.+..+.|.+.
T Consensus 34 ~~~~t~~ela~~l~is~~tv~~~l~~L~~~ 63 (109)
T 2d1h_A 34 EKPITSEELADIFKLSKTTVENSLKKLIEL 63 (109)
T ss_dssp CSCEEHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 457899999999999999999999999765
No 160
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=76.63 E-value=3.5 Score=32.33 Aligned_cols=30 Identities=7% Similarity=0.107 Sum_probs=27.1
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHHHHh
Q psy6534 259 SDKRSQKEIGDIAGVAEVTIRQSYKLMYPH 288 (309)
Q Consensus 259 ~~~~~~~~ia~~~~vs~~ti~~~~kei~~~ 288 (309)
+.+.+..|||+.+|+|+.|++++.+.|.+.
T Consensus 22 ~~~~s~~ela~~lg~s~~tv~~~l~~L~~~ 51 (162)
T 2p5v_A 22 NGRLTNVELSERVALSPSPCLRRLKQLEDA 51 (162)
T ss_dssp CTTCCHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 346899999999999999999999999865
No 161
>3oou_A LIN2118 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; HET: BTB; 1.57A {Listeria innocua}
Probab=76.46 E-value=4.9 Score=29.00 Aligned_cols=39 Identities=18% Similarity=0.248 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q psy6534 246 VAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLM 285 (309)
Q Consensus 246 iaaAaiyla~~~~~~~~~~~~ia~~~~vs~~ti~~~~kei 285 (309)
+..+.-|+-... ..++++.++|+.+|+|+.++.+.+++.
T Consensus 7 i~~~~~~i~~~~-~~~~~~~~lA~~~~~S~~~l~r~fk~~ 45 (108)
T 3oou_A 7 IQNVLSYITEHF-SEGMSLKTLGNDFHINAVYLGQLFQKE 45 (108)
T ss_dssp HHHHHHHHHHHT-TSCCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh-cCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 333444555544 447999999999999999999999876
No 162
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=76.46 E-value=3.5 Score=32.85 Aligned_cols=31 Identities=16% Similarity=0.145 Sum_probs=27.6
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHHHHhh
Q psy6534 259 SDKRSQKEIGDIAGVAEVTIRQSYKLMYPHA 289 (309)
Q Consensus 259 ~~~~~~~~ia~~~~vs~~ti~~~~kei~~~~ 289 (309)
+-+.+..+||+.+|+|+.|++++.+.|.+.-
T Consensus 29 ~~~~s~~eLA~~lglS~~tv~~~l~~L~~~G 59 (171)
T 2ia0_A 29 DARLTISELSEQLKKPESTIHFRIKKLQERG 59 (171)
T ss_dssp CTTCCHHHHHHHHTSCHHHHHHHHHHHHHTT
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence 3468999999999999999999999997653
No 163
>1twf_I B12.6, DNA-directed RNA polymerase II 14.2 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.3.1 g.41.3.1 PDB: 1i3q_I 1i6h_I 1k83_I* 1nik_I 1nt9_I 1pqv_I 1r5u_I 1r9s_I* 1r9t_I* 1sfo_I* 1twa_I* 1twc_I* 1i50_I* 1twg_I* 1twh_I* 1wcm_I 1y1v_I 1y1w_I 1y1y_I 1y77_I* ...
Probab=76.31 E-value=1 Score=34.09 Aligned_cols=30 Identities=20% Similarity=0.234 Sum_probs=20.9
Q ss_pred ccCCCCCCCCe-eee--CCCCceecCCCCcccc
Q psy6534 6 VCCYEHPDAPL-IED--YRAGDQICSECGLVVG 35 (309)
Q Consensus 6 ~~Cp~C~~~~~-v~D--~~~G~~vC~~CG~V~~ 35 (309)
.-||.||.--. -.| ...+.+.|..||+...
T Consensus 5 ~FCp~CgnlL~~~~~~~~~~~~~~C~~C~y~~~ 37 (122)
T 1twf_I 5 RFCRDCNNMLYPREDKENNRLLFECRTCSYVEE 37 (122)
T ss_dssp CBCSSSCCBCEEEEETTTTEEEEECSSSSCEEE
T ss_pred CcccccCccCcccccCcCCCCEEECCcCCCeee
Confidence 47999986422 224 3456899999999764
No 164
>1ylf_A RRF2 family protein; structural genomics, transcription regulator, P protein structure initiative; 2.50A {Bacillus cereus atcc 14579} SCOP: a.4.5.55
Probab=76.24 E-value=5 Score=31.09 Aligned_cols=42 Identities=12% Similarity=0.180 Sum_probs=32.9
Q ss_pred HHHHHH-HHHHHhCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHh
Q psy6534 246 VAAAAI-YMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPH 288 (309)
Q Consensus 246 iaaAai-yla~~~~~~~~~~~~ia~~~~vs~~ti~~~~kei~~~ 288 (309)
+|.-++ |++. ..+.+++.++||+..++++.++++.+..|.+.
T Consensus 15 yAl~~L~~La~-~~~~~~~~~~iA~~~~i~~~~l~kil~~L~~~ 57 (149)
T 1ylf_A 15 IAVHILSILKN-NPSSLCTSDYMAESVNTNPVVIRKIMSYLKQA 57 (149)
T ss_dssp HHHHHHHHHHH-SCGGGCCHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHh-CCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 444444 5554 23457899999999999999999999999875
No 165
>1gnf_A Transcription factor GATA-1; zinc finger, transcription regulation; NMR {Mus musculus} SCOP: g.39.1.1 PDB: 1y0j_A 2l6y_A 2l6z_A
Probab=76.12 E-value=0.73 Score=28.49 Aligned_cols=30 Identities=27% Similarity=0.533 Sum_probs=18.5
Q ss_pred cccCCCCCCCC--eeeeCCCCceecCCCCccc
Q psy6534 5 KVCCYEHPDAP--LIEDYRAGDQICSECGLVV 34 (309)
Q Consensus 5 ~~~Cp~C~~~~--~v~D~~~G~~vC~~CG~V~ 34 (309)
...|.+|+.+. +-....+|..+|..||+-.
T Consensus 4 ~~~C~~C~tt~Tp~WR~gp~G~~LCNaCGl~~ 35 (46)
T 1gnf_A 4 ARECVNCGATATPLWRRDRTGHYLCNACGLYH 35 (46)
T ss_dssp SCCCTTTCCCCCSSCBCCTTCCCBCSHHHHHH
T ss_pred CCCCCCcCCCCCCcCccCCCCCccchHHHHHH
Confidence 44688887553 2223346778888888653
No 166
>2aus_D NOP10, ribosome biogenesis protein NOP10; isomerase, structural protein, isomerase-structural protein; 2.10A {Pyrococcus abyssi} PDB: 3lwr_B 3lwo_B* 3lwq_B* 3lwp_B 3lwv_B 3hax_C* 2hvy_C* 3hay_C* 2ey4_E 3hjw_B* 2rfk_B* 3hjy_B 3mqk_B
Probab=75.97 E-value=0.89 Score=29.75 Aligned_cols=27 Identities=22% Similarity=0.402 Sum_probs=18.1
Q ss_pred CCCCcccCCCCCCCCeeeeCCCCceecCCCCccc
Q psy6534 1 MNINKVCCYEHPDAPLIEDYRAGDQICSECGLVV 34 (309)
Q Consensus 1 ~~~~~~~Cp~C~~~~~v~D~~~G~~vC~~CG~V~ 34 (309)
|......||.||...+ ..+|..||...
T Consensus 1 Mks~mr~C~~Cg~YTL-------k~~CP~CG~~t 27 (60)
T 2aus_D 1 MRFRIRKCPKCGRYTL-------KETCPVCGEKT 27 (60)
T ss_dssp ---CCEECTTTCCEES-------SSBCTTTCSBC
T ss_pred CCccceECCCCCCEEc-------cccCcCCCCcc
Confidence 6677789999986433 55799999664
No 167
>3t8r_A Staphylococcus aureus CYMR; transcriptional regulator protein, dimer, sulfenic acid, UNK function; 1.70A {Staphylococcus aureus} PDB: 3t8t_A
Probab=75.89 E-value=4.6 Score=31.19 Aligned_cols=44 Identities=11% Similarity=0.025 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHhcCCCccHHHHHHHhcccHHHHHHHHHHHHHH
Q psy6534 151 AIASACLYIACRQEGVPRTFKEICAVSKISKKEIGRCFKLILKA 194 (309)
Q Consensus 151 ~vaaAcly~acR~~~~~~tl~eia~~~~~~~~~i~~~~~~l~~~ 194 (309)
.-+-+.+|+|....+.|.+.++||+..+++...+.+.+..|.+.
T Consensus 12 yAl~~L~~La~~~~~~~~s~~~IA~~~~i~~~~l~kil~~L~~a 55 (143)
T 3t8r_A 12 YGLTLMISLAKKEGQGCISLKSIAEENNLSDLYLEQLVGPLRNA 55 (143)
T ss_dssp HHHHHHHHHHTTTTSCCEEHHHHHHHTTCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 44446788886655568999999999999999999999988763
No 168
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=75.84 E-value=5.3 Score=32.71 Aligned_cols=29 Identities=14% Similarity=0.100 Sum_probs=26.9
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHh
Q psy6534 260 DKRSQKEIGDIAGVAEVTIRQSYKLMYPH 288 (309)
Q Consensus 260 ~~~~~~~ia~~~~vs~~ti~~~~kei~~~ 288 (309)
.++|+++||+.+|+|+.|+.+..++|.+.
T Consensus 174 ~~~t~~~iA~~lg~sr~tvsR~l~~L~~~ 202 (231)
T 3e97_A 174 LPLGTQDIMARTSSSRETVSRVLKRLEAH 202 (231)
T ss_dssp ECCCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred cCCCHHHHHHHhCCcHHHHHHHHHHHHHC
Confidence 57899999999999999999999999875
No 169
>2kao_A Methionine-R-sulfoxide reductase B1; mouse reduced methionine sulfoxide reductase B1 (MSRB1) (SEC95Cys mutant, selenocysteine; NMR {Mus musculus} PDB: 2kv1_A
Probab=75.79 E-value=2.3 Score=32.04 Aligned_cols=31 Identities=19% Similarity=0.622 Sum_probs=26.5
Q ss_pred CCCCceecCCCCccc--cCcccccCCCcccccC
Q psy6534 20 YRAGDQICSECGLVV--GDRVIDVGSEWRTFSN 50 (309)
Q Consensus 20 ~~~G~~vC~~CG~V~--~e~~id~~~ewr~f~~ 50 (309)
.+.|.++|..||.-| .+.-+|.|.-|.+|.+
T Consensus 16 ~~~GiY~C~~Cg~pLF~S~~KFdSG~GWPSF~~ 48 (124)
T 2kao_A 16 FEPGVYVCAKCSYELFSSHSKYAHSSPWPAFTE 48 (124)
T ss_dssp CCCCEEEESSSCCCCCCTTTSCCCCCSSCCBSC
T ss_pred CCCEEEEeCCCCCccccCcccccCCCCChhhCc
Confidence 478999999999887 5557899999999975
No 170
>3frw_A Putative Trp repressor protein; structural genomics, APC21159, PSI-2, P structure initiative; 2.05A {Ruminococcus obeum atcc 29174} PDB: 3g1c_A
Probab=75.78 E-value=4.8 Score=29.56 Aligned_cols=34 Identities=21% Similarity=0.316 Sum_probs=27.2
Q ss_pred HHHhCCCCCCHHHHHHHhCCCHHHHHHHHHHHHH
Q psy6534 254 ASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYP 287 (309)
Q Consensus 254 a~~~~~~~~~~~~ia~~~~vs~~ti~~~~kei~~ 287 (309)
+++++....++.+|++.+|+|..||.+.-|.|..
T Consensus 51 Ia~lL~~G~SyreIa~~tG~StaTIsRv~r~L~~ 84 (107)
T 3frw_A 51 VAKMLTDKRTYLDISEKTGASTATISRVNRSLNY 84 (107)
T ss_dssp HHHHHHTTCCHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHCccHHHHHHHHHHHHc
Confidence 3444445599999999999999999998877753
No 171
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=75.60 E-value=0.96 Score=27.62 Aligned_cols=23 Identities=13% Similarity=0.300 Sum_probs=20.2
Q ss_pred CCHHHHHHHhCCCHHHHHHHHHH
Q psy6534 262 RSQKEIGDIAGVAEVTIRQSYKL 284 (309)
Q Consensus 262 ~~~~~ia~~~~vs~~ti~~~~ke 284 (309)
.+..+||+.+|||..||.+..++
T Consensus 22 ~s~~~ia~~lgvs~~Tv~r~l~~ 44 (52)
T 1jko_C 22 HPRQQLAIIFGIGVSTLYRYFPA 44 (52)
T ss_dssp CCHHHHHHTTSCCHHHHHHHSCT
T ss_pred CCHHHHHHHHCCCHHHHHHHHHH
Confidence 79999999999999999876543
No 172
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2
Probab=75.48 E-value=8.5 Score=31.43 Aligned_cols=31 Identities=10% Similarity=0.102 Sum_probs=27.7
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHHHHhh
Q psy6534 259 SDKRSQKEIGDIAGVAEVTIRQSYKLMYPHA 289 (309)
Q Consensus 259 ~~~~~~~~ia~~~~vs~~ti~~~~kei~~~~ 289 (309)
..++|+++||+.+|+++.|+.+..++|.+..
T Consensus 178 ~~~~t~~~lA~~lg~sr~tvsR~l~~l~~~g 208 (232)
T 2gau_A 178 SIYLSREELATLSNMTVSNAIRTLSTFVSER 208 (232)
T ss_dssp SCCCCHHHHHHHTTSCHHHHHHHHHHHHHTT
T ss_pred EcccCHHHHHHHhCCCHHHHHHHHHHHHHCC
Confidence 3578999999999999999999999997653
No 173
>3ga8_A HTH-type transcriptional regulator MQSA (YGIT/B30; helix-turn-helix, Zn-binding protein, DNA-binding, transcrip transcription regulation; HET: PE4; 1.70A {Escherichia coli k-12} PDB: 3hi2_A
Probab=75.40 E-value=1.1 Score=30.86 Aligned_cols=30 Identities=13% Similarity=0.350 Sum_probs=18.4
Q ss_pred cccCCCCCCCCeeeeC------CCC---------ceecCCCCccc
Q psy6534 5 KVCCYEHPDAPLIEDY------RAG---------DQICSECGLVV 34 (309)
Q Consensus 5 ~~~Cp~C~~~~~v~D~------~~G---------~~vC~~CG~V~ 34 (309)
.|.||.||...++.+. -.| -.+|..||.++
T Consensus 2 ~m~Cp~Cg~~~l~~~~~~~~~~~~G~~~~I~~Vp~~~C~~CGE~~ 46 (78)
T 3ga8_A 2 HMKCPVCHQGEMVSGIKDIPYTFRGRKTVLKGIHGLYCVHCEESI 46 (78)
T ss_dssp -CBCTTTSSSBEEEEEEEEEEEETTEEEEEEEEEEEEETTTCCEE
T ss_pred ceECCCCCCCeeEeEEEEEEEEECCEEEEEcCceeEECCCCCCEE
Confidence 4799999875443221 022 35799999765
No 174
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Probab=75.09 E-value=6.2 Score=32.04 Aligned_cols=30 Identities=13% Similarity=0.036 Sum_probs=27.4
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHhh
Q psy6534 260 DKRSQKEIGDIAGVAEVTIRQSYKLMYPHA 289 (309)
Q Consensus 260 ~~~~~~~ia~~~~vs~~ti~~~~kei~~~~ 289 (309)
.++|+++||+.+|+|+.|+.+..++|.+.-
T Consensus 166 ~~~t~~~lA~~lg~sr~tvsR~l~~l~~~g 195 (220)
T 2fmy_A 166 LGLNTEEIALMLGTTRQTVSVLLNDFKKMG 195 (220)
T ss_dssp CSSCHHHHHHHHTSCHHHHHHHHHHHHHTT
T ss_pred ccCCHHHHHHHhCCcHHHHHHHHHHHHHCC
Confidence 578999999999999999999999997653
No 175
>1d0q_A DNA primase; zinc-binding motif, protein, transferase; HET: DNA; 1.71A {Geobacillus stearothermophilus} SCOP: g.41.3.2
Probab=75.08 E-value=2 Score=31.38 Aligned_cols=26 Identities=19% Similarity=0.244 Sum_probs=21.3
Q ss_pred ccCCCCCCC--CeeeeCCCCceecCCCC
Q psy6534 6 VCCYEHPDA--PLIEDYRAGDQICSECG 31 (309)
Q Consensus 6 ~~Cp~C~~~--~~v~D~~~G~~vC~~CG 31 (309)
..||.|+.. .+..++..|...|-.||
T Consensus 38 ~~CPfh~e~~pSf~V~~~k~~~~Cf~cg 65 (103)
T 1d0q_A 38 GLCPFHGEKTPSFSVSPEKQIFHCFGCG 65 (103)
T ss_dssp ECCSSSCCSSCCEEEETTTTEEEETTTC
T ss_pred EECCCCCCCCCcEEEEcCCCEEEECCCC
Confidence 369999753 57778888999999998
No 176
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=74.76 E-value=8 Score=27.09 Aligned_cols=31 Identities=23% Similarity=0.127 Sum_probs=27.7
Q ss_pred CCCCCCHHHHHHHhCCCHHH-HHHHHHHHHHh
Q psy6534 258 SSDKRSQKEIGDIAGVAEVT-IRQSYKLMYPH 288 (309)
Q Consensus 258 ~~~~~~~~~ia~~~~vs~~t-i~~~~kei~~~ 288 (309)
.+.+.++.+||+.++++..| +.+..+.|.+.
T Consensus 27 ~~~~~t~~eLa~~l~is~~t~vs~~l~~Le~~ 58 (95)
T 2pg4_A 27 KGYEPSLAEIVKASGVSEKTFFMGLKDRLIRA 58 (95)
T ss_dssp TTCCCCHHHHHHHHCCCHHHHHTTHHHHHHHT
T ss_pred cCCCCCHHHHHHHHCCCchHHHHHHHHHHHHC
Confidence 45579999999999999999 99999999765
No 177
>4gat_A Nitrogen regulatory protein AREA; DNA binding protein, transcription factor, zinc binding domain, complex (transcription regulation/DNA); HET: DNA; NMR {Emericella nidulans} SCOP: g.39.1.1 PDB: 5gat_A* 6gat_A* 7gat_A*
Probab=74.61 E-value=0.75 Score=30.83 Aligned_cols=32 Identities=22% Similarity=0.504 Sum_probs=21.1
Q ss_pred CCcccCCCCCCCC--eeeeCCCCceecCCCCccc
Q psy6534 3 INKVCCYEHPDAP--LIEDYRAGDQICSECGLVV 34 (309)
Q Consensus 3 ~~~~~Cp~C~~~~--~v~D~~~G~~vC~~CG~V~ 34 (309)
+....|-+|+.+. .-....+|.++|..||+-.
T Consensus 7 ~~~~~C~~C~t~~Tp~WR~gp~G~~LCNaCGl~~ 40 (66)
T 4gat_A 7 NGPTTCTNCFTQTTPLWRRNPEGQPLCNACGLFL 40 (66)
T ss_dssp SSSCCCTTTCCCCCSSCEEETTTEEECHHHHHHH
T ss_pred CCCCCCCCCCCCCCCcCCcCCCCCCccHHHHHHH
Confidence 4456788888653 2222336788899998765
No 178
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=74.58 E-value=4.4 Score=31.26 Aligned_cols=30 Identities=10% Similarity=0.245 Sum_probs=27.3
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHHHHh
Q psy6534 259 SDKRSQKEIGDIAGVAEVTIRQSYKLMYPH 288 (309)
Q Consensus 259 ~~~~~~~~ia~~~~vs~~ti~~~~kei~~~ 288 (309)
+-+.+..+||+.+|+|+.|++++.+.|.+.
T Consensus 19 ~~~~s~~ela~~lg~s~~tv~~~l~~L~~~ 48 (150)
T 2w25_A 19 DGRATLSELATRAGLSVSAVQSRVRRLESR 48 (150)
T ss_dssp CTTCCHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 357899999999999999999999999865
No 179
>3oio_A Transcriptional regulator (ARAC-type DNA-binding containing proteins); PSI-2, midwest center for structural genomics; 1.65A {Chromobacterium violaceum}
Probab=74.26 E-value=5.8 Score=28.86 Aligned_cols=30 Identities=17% Similarity=0.256 Sum_probs=25.7
Q ss_pred HhCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q psy6534 256 QASSDKRSQKEIGDIAGVAEVTIRQSYKLM 285 (309)
Q Consensus 256 ~~~~~~~~~~~ia~~~~vs~~ti~~~~kei 285 (309)
.....++++.++|+.+|+|+.++.+.+++.
T Consensus 18 ~~~~~~~~~~~lA~~~~~S~~~l~r~fk~~ 47 (113)
T 3oio_A 18 ANIEEPLSTDDIAYYVGVSRRQLERLFKQY 47 (113)
T ss_dssp TCSSSCCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred hhhcCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 333456999999999999999999999886
No 180
>3kor_A Possible Trp repressor; putative DNA-binding Trp repressor, TRPR like protein, struc genomics, transcription; 1.60A {Staphylococcus aureus}
Probab=74.20 E-value=14 Score=27.58 Aligned_cols=33 Identities=12% Similarity=0.147 Sum_probs=25.9
Q ss_pred HHHhCCCCCCHHHHHHHhCCCHHHHHHHHHHHH
Q psy6534 254 ASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMY 286 (309)
Q Consensus 254 a~~~~~~~~~~~~ia~~~~vs~~ti~~~~kei~ 286 (309)
++++.....+++|||+.+|+|..||.+.-+.|.
T Consensus 68 V~klL~~G~syreIA~~~g~S~aTIsRv~r~L~ 100 (119)
T 3kor_A 68 VAKMIKQGYTYATIEQESGASTATISRVKRSLQ 100 (119)
T ss_dssp HHHHHHHTCCHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHCCCHHHHHHHHHHHh
Confidence 334443459999999999999999998777664
No 181
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...
Probab=74.11 E-value=5 Score=32.18 Aligned_cols=30 Identities=27% Similarity=0.418 Sum_probs=27.2
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHhh
Q psy6534 260 DKRSQKEIGDIAGVAEVTIRQSYKLMYPHA 289 (309)
Q Consensus 260 ~~~~~~~ia~~~~vs~~ti~~~~kei~~~~ 289 (309)
.++|+++||+.+|+++.|+.+..++|.+.-
T Consensus 166 ~~~t~~~iA~~lg~sr~tvsR~l~~L~~~g 195 (210)
T 3ryp_A 166 IKITRQEIGQIVGCSRETVGRILKMLEDQN 195 (210)
T ss_dssp EECCHHHHHHHHTCCHHHHHHHHHHHHHTT
T ss_pred eccCHHHHHHHhCCcHHHHHHHHHHHHHCC
Confidence 478999999999999999999999998753
No 182
>1j1v_A Chromosomal replication initiator protein DNAA, 5'-D(*CP*CP*TP*GP*TP*GP*GP*AP*TP*AP*AP*CP*A)-3'; protein-DNA complex; 2.10A {Escherichia coli} SCOP: a.4.12.2
Probab=73.54 E-value=5.5 Score=28.48 Aligned_cols=41 Identities=15% Similarity=0.081 Sum_probs=32.9
Q ss_pred HHHHHHHhcCCCccHHHHHHHh-cccHHHHHHHHHHHHHHhccc
Q psy6534 156 CLYIACRQEGVPRTFKEICAVS-KISKKEIGRCFKLILKALETS 198 (309)
Q Consensus 156 cly~acR~~~~~~tl~eia~~~-~~~~~~i~~~~~~l~~~l~~~ 198 (309)
+.|++-+. ...++.+|+..+ |-|-..+..+++++.+.+..+
T Consensus 37 amyL~r~~--t~~Sl~~IG~~fggrdHsTV~ha~~ki~~~~~~d 78 (94)
T 1j1v_A 37 AMALAKEL--TNHSLPEIGDAFGGRDHTTVLHACRKIEQLREES 78 (94)
T ss_dssp HHHHHHHH--SCCCHHHHHHHTTSCCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHH--HCcCHHHHHHHhCCCCHHHHHHHHHHHHHHHHhC
Confidence 45665333 478899999999 899999999999999887643
No 183
>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis}
Probab=73.21 E-value=8 Score=28.90 Aligned_cols=42 Identities=12% Similarity=0.171 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHhcCCCccHHHHHHHhcccHHHHHHHHHHHHH
Q psy6534 152 IASACLYIACRQEGVPRTFKEICAVSKISKKEIGRCFKLILK 193 (309)
Q Consensus 152 vaaAcly~acR~~~~~~tl~eia~~~~~~~~~i~~~~~~l~~ 193 (309)
.+.+..|++-+..+-|.+..|||+.++++...+.+.+..|.+
T Consensus 11 al~iL~~la~~~~~~~~s~~ela~~~~i~~~~v~~il~~L~~ 52 (129)
T 2y75_A 11 GLTIMIELAKKHGEGPTSLKSIAQTNNLSEHYLEQLVSPLRN 52 (129)
T ss_dssp HHHHHHHHHHTTTSCCBCHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCcCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 334555666544467899999999999999999999988876
No 184
>2l0k_A Stage III sporulation protein D; SPOIIID, solution structure, DNA binding, bacillus subti transcription factor, transcription; NMR {Bacillus subtilis}
Probab=73.14 E-value=2.5 Score=30.29 Aligned_cols=23 Identities=17% Similarity=0.296 Sum_probs=21.0
Q ss_pred CCHHHHHHHhCCCHHHHHHHHHH
Q psy6534 262 RSQKEIGDIAGVAEVTIRQSYKL 284 (309)
Q Consensus 262 ~~~~~ia~~~~vs~~ti~~~~ke 284 (309)
++++|||+.+|||..||++..+.
T Consensus 21 ~ti~dlA~~~gVS~~TVsR~L~~ 43 (93)
T 2l0k_A 21 KTVRVIAKEFGVSKSTVHKDLTE 43 (93)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHTT
T ss_pred CCHHHHHHHHCCCHHHHHHHHcC
Confidence 79999999999999999998764
No 185
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2
Probab=72.98 E-value=8 Score=31.76 Aligned_cols=30 Identities=7% Similarity=0.081 Sum_probs=27.2
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHhh
Q psy6534 260 DKRSQKEIGDIAGVAEVTIRQSYKLMYPHA 289 (309)
Q Consensus 260 ~~~~~~~ia~~~~vs~~ti~~~~kei~~~~ 289 (309)
.++|+++||+.+|+++.|+.+..++|.+..
T Consensus 185 ~~~t~~~lA~~lG~sr~tvsR~l~~l~~~g 214 (232)
T 1zyb_A 185 FKVKMDDLARCLDDTRLNISKTLNELQDNG 214 (232)
T ss_dssp EECCHHHHHHHHTSCHHHHHHHHHHHHHTT
T ss_pred ecCCHHHHHHHhCCChhHHHHHHHHHHHCC
Confidence 568999999999999999999999998653
No 186
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=72.70 E-value=5.5 Score=28.11 Aligned_cols=29 Identities=10% Similarity=0.094 Sum_probs=26.7
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHh
Q psy6534 260 DKRSQKEIGDIAGVAEVTIRQSYKLMYPH 288 (309)
Q Consensus 260 ~~~~~~~ia~~~~vs~~ti~~~~kei~~~ 288 (309)
-+.+..|||+.+|++.+|+.+..+.|.+.
T Consensus 35 ~~~~~~ela~~l~is~~tvs~~L~~L~~~ 63 (98)
T 3jth_A 35 QELSVGELCAKLQLSQSALSQHLAWLRRD 63 (98)
T ss_dssp SCEEHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 57899999999999999999999999875
No 187
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}
Probab=72.61 E-value=5.7 Score=31.79 Aligned_cols=29 Identities=14% Similarity=0.155 Sum_probs=26.8
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHh
Q psy6534 260 DKRSQKEIGDIAGVAEVTIRQSYKLMYPH 288 (309)
Q Consensus 260 ~~~~~~~ia~~~~vs~~ti~~~~kei~~~ 288 (309)
.++|+++||+.+|+++.|+.+..++|.+.
T Consensus 145 ~~~t~~~lA~~lg~sr~tvsR~l~~L~~~ 173 (202)
T 2zcw_A 145 LKATHDELAAAVGSVRETVTKVIGELARE 173 (202)
T ss_dssp EECCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred cCCCHHHHHHHhCCCHHHHHHHHHHHHHC
Confidence 56899999999999999999999999865
No 188
>2lfw_A PHYR sigma-like domain; signal transduction, response regulator, sigma factor mimicr sigma factor, general stress response, signaling protein; NMR {Sphingomonas SP}
Probab=72.50 E-value=5.2 Score=31.08 Aligned_cols=34 Identities=9% Similarity=0.009 Sum_probs=27.5
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHhhcccC
Q psy6534 260 DKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKLF 293 (309)
Q Consensus 260 ~~~~~~~ia~~~~vs~~ti~~~~kei~~~~~~l~ 293 (309)
...+.+|||+.+|+++.|++++...-.+...+.+
T Consensus 108 ~g~s~~EIA~~lgis~~tV~~~l~rar~~Lr~~l 141 (157)
T 2lfw_A 108 EGFSPEDAAYLIEVDTSEVETLVTEALAEIEKQT 141 (157)
T ss_dssp SCCCHHHHHHTTTSCHHHHHHHHHHHHHHHHTTS
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHH
Confidence 4689999999999999999988877665555444
No 189
>3qt1_I DNA-directed RNA polymerases I, II, and III subun; transferase-transcription complex, RNA polymerase II, transc elongation; 4.30A {Saccharomyces cerevisiae}
Probab=72.33 E-value=2 Score=33.09 Aligned_cols=28 Identities=18% Similarity=0.235 Sum_probs=18.8
Q ss_pred cCCCCCCCCeee-eC--CCCceecCCCCccc
Q psy6534 7 CCYEHPDAPLIE-DY--RAGDQICSECGLVV 34 (309)
Q Consensus 7 ~Cp~C~~~~~v~-D~--~~G~~vC~~CG~V~ 34 (309)
-||.||+--... |. ....++|..||++.
T Consensus 26 FCPeCgNmL~pked~~~~~l~~~CrtCgY~~ 56 (133)
T 3qt1_I 26 FCRDCNNMLYPREDKENNRLLFECRTCSYVE 56 (133)
T ss_dssp BCTTTCCBCBCCBCTTTCCBCCBCSSSCCBC
T ss_pred eCCCCCCEeeECccCCCceeEEECCCCCCcE
Confidence 599998643222 22 22369999999975
No 190
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=72.15 E-value=5.8 Score=31.70 Aligned_cols=30 Identities=23% Similarity=0.336 Sum_probs=27.2
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHhh
Q psy6534 260 DKRSQKEIGDIAGVAEVTIRQSYKLMYPHA 289 (309)
Q Consensus 260 ~~~~~~~ia~~~~vs~~ti~~~~kei~~~~ 289 (309)
.++|+++||+.+|+++.|+.+..++|.+.-
T Consensus 163 ~~~t~~~lA~~lg~sr~tvsR~l~~l~~~g 192 (207)
T 2oz6_A 163 IKITRQEIGRIVGCSREMVGRVLKSLEEQG 192 (207)
T ss_dssp EECCHHHHHHHHTSCHHHHHHHHHHHHHTT
T ss_pred cccCHHHHHHHhCCCHHHHHHHHHHHHHCC
Confidence 468999999999999999999999998753
No 191
>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A*
Probab=71.95 E-value=8.2 Score=31.63 Aligned_cols=31 Identities=6% Similarity=0.106 Sum_probs=28.1
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHHHHhh
Q psy6534 259 SDKRSQKEIGDIAGVAEVTIRQSYKLMYPHA 289 (309)
Q Consensus 259 ~~~~~~~~ia~~~~vs~~ti~~~~kei~~~~ 289 (309)
..++|+++||+.+|+++.|+.+..++|.+.-
T Consensus 176 ~l~~t~~~iA~~lg~sr~tvsR~l~~L~~~g 206 (237)
T 3fx3_A 176 TLPYDKMLIAGRLGMKPESLSRAFSRLKAAG 206 (237)
T ss_dssp ECCSCTHHHHHHTTCCHHHHHHHHHHHGGGT
T ss_pred EecCCHHHHHHHhCCCHHHHHHHHHHHHHCC
Confidence 4678899999999999999999999998765
No 192
>1v4r_A Transcriptional repressor; helix-turn-helix, winged-helix, gene regulation; NMR {Streptomyces} SCOP: a.4.5.6
Probab=71.89 E-value=0.94 Score=32.79 Aligned_cols=29 Identities=24% Similarity=0.297 Sum_probs=25.4
Q ss_pred CCC-CHHHHHHHhCCCHHHHHHHHHHHHHh
Q psy6534 260 DKR-SQKEIGDIAGVAEVTIRQSYKLMYPH 288 (309)
Q Consensus 260 ~~~-~~~~ia~~~~vs~~ti~~~~kei~~~ 288 (309)
..+ +..++|+.+|||..|++++++.|.+.
T Consensus 33 ~~lps~~eLa~~~~vSr~tvr~al~~L~~~ 62 (102)
T 1v4r_A 33 DTLPSVADIRAQFGVAAKTVSRALAVLKSE 62 (102)
T ss_dssp SBCCCHHHHHHHSSSCTTHHHHHTTTTTTS
T ss_pred CCCcCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 345 89999999999999999999998654
No 193
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=71.86 E-value=5.5 Score=27.87 Aligned_cols=30 Identities=23% Similarity=0.236 Sum_probs=27.0
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHHHHh
Q psy6534 259 SDKRSQKEIGDIAGVAEVTIRQSYKLMYPH 288 (309)
Q Consensus 259 ~~~~~~~~ia~~~~vs~~ti~~~~kei~~~ 288 (309)
+.+.+..+||+.+|++.+|+.+..+.|.+.
T Consensus 36 ~~~~s~~ela~~l~is~~tvs~~l~~L~~~ 65 (99)
T 3cuo_A 36 SPGTSAGELTRITGLSASATSQHLARMRDE 65 (99)
T ss_dssp CCSEEHHHHHHHHCCCHHHHHHHHHHHHHT
T ss_pred CCCcCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 457899999999999999999999999754
No 194
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=71.82 E-value=5.2 Score=32.53 Aligned_cols=31 Identities=3% Similarity=-0.035 Sum_probs=27.9
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHHHHhh
Q psy6534 259 SDKRSQKEIGDIAGVAEVTIRQSYKLMYPHA 289 (309)
Q Consensus 259 ~~~~~~~~ia~~~~vs~~ti~~~~kei~~~~ 289 (309)
..++|+++||+.+|+++.|+.+..++|.+.-
T Consensus 176 ~~~~t~~~lA~~lg~sr~tvsR~l~~l~~~g 206 (227)
T 3dkw_A 176 EIPVAKQLVAGHLSIQPETFSRIMHRLGDEG 206 (227)
T ss_dssp CCCSCTHHHHHHTTSCHHHHHHHHHHHHHHT
T ss_pred EecCCHHHHHHHhCCCHHHHHHHHHHHHHCC
Confidence 4578999999999999999999999998763
No 195
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=71.59 E-value=4.9 Score=28.35 Aligned_cols=29 Identities=17% Similarity=0.229 Sum_probs=26.5
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHh
Q psy6534 260 DKRSQKEIGDIAGVAEVTIRQSYKLMYPH 288 (309)
Q Consensus 260 ~~~~~~~ia~~~~vs~~ti~~~~kei~~~ 288 (309)
-+.+..+||+.+|++..|+.+..+.|.+.
T Consensus 42 ~~~~~~eLa~~l~is~~tv~~~L~~L~~~ 70 (96)
T 1y0u_A 42 KGRSEEEIMQTLSLSKKQLDYHLKVLEAG 70 (96)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 45899999999999999999999999765
No 196
>3v2d_5 50S ribosomal protein L32; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_4 2hgj_4 2hgu_4 2j03_5 2jl6_5 2jl8_5 2v47_5 2v49_5 2wdi_5 2wdj_5 2wdl_5 2wdn_5 2wh2_5 2wh4_5 2wrj_5 2wrl_5 2wro_5 2wrr_5 2x9s_5 2x9u_5 ...
Probab=71.34 E-value=1.1 Score=29.32 Aligned_cols=23 Identities=30% Similarity=0.600 Sum_probs=15.2
Q ss_pred cccCCCCCCCCeeeeCCCCceecCCCCcc
Q psy6534 5 KVCCYEHPDAPLIEDYRAGDQICSECGLV 33 (309)
Q Consensus 5 ~~~Cp~C~~~~~v~D~~~G~~vC~~CG~V 33 (309)
-..||.||... .--.+|.+||+-
T Consensus 30 l~~c~~cGe~~------~~H~vc~~CG~Y 52 (60)
T 3v2d_5 30 LVPCPECKAMK------PPHTVCPECGYY 52 (60)
T ss_dssp CEECTTTCCEE------CTTSCCTTTCEE
T ss_pred eeECCCCCCee------cceEEcCCCCcC
Confidence 45688887632 235678889854
No 197
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=71.34 E-value=2.4 Score=28.72 Aligned_cols=12 Identities=25% Similarity=0.753 Sum_probs=6.4
Q ss_pred ceecCCCCcccc
Q psy6534 24 DQICSECGLVVG 35 (309)
Q Consensus 24 ~~vC~~CG~V~~ 35 (309)
..+|+.||+|.+
T Consensus 7 ~y~C~vCGyiYd 18 (70)
T 1dx8_A 7 KYECEACGYIYE 18 (70)
T ss_dssp CEEETTTCCEEC
T ss_pred eEEeCCCCEEEc
Confidence 455555555554
No 198
>2o3f_A Putative HTH-type transcriptional regulator YBBH; APC85504, putative transcriptional regulator YBBH; HET: MLY; 1.75A {Bacillus subtilis} SCOP: a.4.1.20
Probab=70.52 E-value=3.6 Score=30.37 Aligned_cols=25 Identities=12% Similarity=0.244 Sum_probs=21.0
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHHH
Q psy6534 261 KRSQKEIGDIAGVAEVTIRQSYKLM 285 (309)
Q Consensus 261 ~~~~~~ia~~~~vs~~ti~~~~kei 285 (309)
..+..++|+.+|||+.||-+..|.|
T Consensus 39 ~~si~elA~~~~vS~aTv~Rf~kkl 63 (111)
T 2o3f_A 39 ESTVNEISALANSSDAAVIRLCXSL 63 (111)
T ss_dssp TCCHHHHHHHTTCCHHHHHHHHHHT
T ss_pred hcCHHHHHHHHCCCHHHHHHHHHHc
Confidence 4788999999999999998776543
No 199
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=70.33 E-value=9.3 Score=28.44 Aligned_cols=29 Identities=10% Similarity=0.029 Sum_probs=26.9
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHh
Q psy6534 260 DKRSQKEIGDIAGVAEVTIRQSYKLMYPH 288 (309)
Q Consensus 260 ~~~~~~~ia~~~~vs~~ti~~~~kei~~~ 288 (309)
.++++.+||+.++++..|+.+..+.|.+.
T Consensus 49 ~~~~~~ela~~l~~~~~tvs~~l~~Le~~ 77 (141)
T 3bro_A 49 KEVLQRDLESEFSIKSSTATVLLQRMEIK 77 (141)
T ss_dssp SCCBHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCcCHHHHHHHHCCCcchHHHHHHHHHHC
Confidence 37999999999999999999999999876
No 200
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli}
Probab=70.02 E-value=9.5 Score=32.04 Aligned_cols=30 Identities=27% Similarity=0.418 Sum_probs=27.1
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHhh
Q psy6534 260 DKRSQKEIGDIAGVAEVTIRQSYKLMYPHA 289 (309)
Q Consensus 260 ~~~~~~~ia~~~~vs~~ti~~~~kei~~~~ 289 (309)
.++|+++||+.+|+++.|+.+..++|.+.-
T Consensus 216 l~lt~~~lA~~lG~sr~tvsR~l~~L~~~G 245 (260)
T 3kcc_A 216 IKITRQEIGQIVGCSRETVGRILKMLEDQN 245 (260)
T ss_dssp EECCHHHHHHHHTCCHHHHHHHHHHHHHTT
T ss_pred ecCCHHHHHHHhCCCHHHHHHHHHHHHHCC
Confidence 368999999999999999999999998753
No 201
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=69.94 E-value=3.2 Score=31.91 Aligned_cols=33 Identities=15% Similarity=0.136 Sum_probs=26.6
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHhhccc
Q psy6534 260 DKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKL 292 (309)
Q Consensus 260 ~~~~~~~ia~~~~vs~~ti~~~~kei~~~~~~l 292 (309)
...+.+|||+.+|+|+.|+++++....+...+.
T Consensus 123 ~g~s~~EIA~~lgis~~tV~~~~~ra~~~Lr~~ 155 (164)
T 3mzy_A 123 RGYSYREIATILSKNLKSIDNTIQRIRKKSEEW 155 (164)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 457999999999999999998887766554433
No 202
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=69.83 E-value=16 Score=27.34 Aligned_cols=31 Identities=10% Similarity=0.072 Sum_probs=27.9
Q ss_pred CCCCCCHHHHHHHhCCCHHHHHHHHHHHHHh
Q psy6534 258 SSDKRSQKEIGDIAGVAEVTIRQSYKLMYPH 288 (309)
Q Consensus 258 ~~~~~~~~~ia~~~~vs~~ti~~~~kei~~~ 288 (309)
.+.+.++++||+.+|++.+|+.+..+.|.+.
T Consensus 28 ~~~~~s~~ela~~l~is~~tv~~~l~~Le~~ 58 (139)
T 2x4h_A 28 SGEGAKINRIAKDLKIAPSSVFEEVSHLEEK 58 (139)
T ss_dssp TTSCBCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred cCCCcCHHHHHHHhCCChHHHHHHHHHHHHC
Confidence 3567899999999999999999999999875
No 203
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=69.59 E-value=4.1 Score=28.56 Aligned_cols=27 Identities=15% Similarity=0.362 Sum_probs=19.0
Q ss_pred cCCCCCCCCeeeeCCCCceecCCCCccc
Q psy6534 7 CCYEHPDAPLIEDYRAGDQICSECGLVV 34 (309)
Q Consensus 7 ~Cp~C~~~~~v~D~~~G~~vC~~CG~V~ 34 (309)
.||.|+.. ++.+.....+.|..||...
T Consensus 27 wCP~C~~~-~~~~~~~~~v~C~~C~~~F 53 (86)
T 2ct7_A 27 WCAQCSFG-FIYEREQLEATCPQCHQTF 53 (86)
T ss_dssp CCSSSCCC-EECCCSCSCEECTTTCCEE
T ss_pred ECcCCCch-heecCCCCceEeCCCCCcc
Confidence 59988653 4555555678898898765
No 204
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=69.43 E-value=2.6 Score=29.37 Aligned_cols=16 Identities=19% Similarity=0.385 Sum_probs=12.4
Q ss_pred CCceecCCCCccccCc
Q psy6534 22 AGDQICSECGLVVGDR 37 (309)
Q Consensus 22 ~G~~vC~~CG~V~~e~ 37 (309)
....+|..||+|.++.
T Consensus 25 m~~y~C~vCGyvYD~~ 40 (81)
T 2kn9_A 25 YKLFRCIQCGFEYDEA 40 (81)
T ss_dssp CCEEEETTTCCEEETT
T ss_pred cceEEeCCCCEEEcCC
Confidence 3478999999998653
No 205
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=69.22 E-value=5.1 Score=29.61 Aligned_cols=30 Identities=27% Similarity=0.203 Sum_probs=24.6
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHhh
Q psy6534 260 DKRSQKEIGDIAGVAEVTIRQSYKLMYPHA 289 (309)
Q Consensus 260 ~~~~~~~ia~~~~vs~~ti~~~~kei~~~~ 289 (309)
...+.+|||+.+|+|+.|++++........
T Consensus 37 ~g~s~~EIA~~lgiS~~tV~~~l~ra~~kL 66 (113)
T 1s7o_A 37 DDYSLAEIADEFGVSRQAVYDNIKRTEKIL 66 (113)
T ss_dssp TCCCHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 457999999999999999988877665443
No 206
>1neq_A DNA-binding protein NER; NMR {Enterobacteria phage MU} SCOP: a.35.1.2 PDB: 1ner_A
Probab=69.18 E-value=4.9 Score=27.23 Aligned_cols=24 Identities=21% Similarity=0.198 Sum_probs=20.5
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHH
Q psy6534 259 SDKRSQKEIGDIAGVAEVTIRQSY 282 (309)
Q Consensus 259 ~~~~~~~~ia~~~~vs~~ti~~~~ 282 (309)
....|+.++|+.+||+.+||.+..
T Consensus 20 ~~glT~~~LA~~~Gvs~stls~~~ 43 (74)
T 1neq_A 20 KRKLSLSALSRQFGYAPTTLANAL 43 (74)
T ss_dssp TTSCCHHHHHHHHSSCHHHHHHTT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHH
Confidence 346899999999999999998754
No 207
>2e9h_A EIF-5, eukaryotic translation initiation factor 5; zinc binding, C4 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=68.92 E-value=3.6 Score=32.46 Aligned_cols=28 Identities=25% Similarity=0.490 Sum_probs=19.7
Q ss_pred ccCCCCCCCC--eeeeCCCC--ceecCCCCcc
Q psy6534 6 VCCYEHPDAP--LIEDYRAG--DQICSECGLV 33 (309)
Q Consensus 6 ~~Cp~C~~~~--~v~D~~~G--~~vC~~CG~V 33 (309)
..||.|++++ ++.|.+.+ .+.|..||..
T Consensus 104 VlC~~C~sPdT~L~~~~~~r~~~l~C~ACGa~ 135 (157)
T 2e9h_A 104 VLCPECENPETDLHVNPKKQTIGNSCKACGYR 135 (157)
T ss_dssp TSCTTTCCSCCEEEEETTTTEEEEECSSSCCE
T ss_pred EECCCCCCCccEEEEecCCCEEEEEccCCCCC
Confidence 3699999875 44443333 6789999966
No 208
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=68.86 E-value=5.1 Score=29.56 Aligned_cols=30 Identities=17% Similarity=0.138 Sum_probs=24.5
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHhh
Q psy6534 260 DKRSQKEIGDIAGVAEVTIRQSYKLMYPHA 289 (309)
Q Consensus 260 ~~~~~~~ia~~~~vs~~ti~~~~kei~~~~ 289 (309)
...+.+|||+.+|+|+.|++++........
T Consensus 40 ~g~s~~EIA~~lgiS~~tV~~~l~ra~~kL 69 (113)
T 1xsv_A 40 EDYSLSEIADTFNVSRQAVYDNIRRTGDLV 69 (113)
T ss_dssp SCCCHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 457999999999999999988776655443
No 209
>3k69_A Putative transcription regulator; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.95A {Lactobacillus plantarum} SCOP: a.4.5.0
Probab=68.77 E-value=6.4 Score=31.10 Aligned_cols=43 Identities=21% Similarity=0.395 Sum_probs=33.6
Q ss_pred HHHHH-HHHHHHhCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHhh
Q psy6534 246 VAAAA-IYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHA 289 (309)
Q Consensus 246 iaaAa-iyla~~~~~~~~~~~~ia~~~~vs~~ti~~~~kei~~~~ 289 (309)
+|.-+ +|+|.. .+.+++.++||+..++++..+++....|.+.-
T Consensus 13 yAlr~l~~La~~-~~~~~s~~~IA~~~~is~~~l~kil~~L~~aG 56 (162)
T 3k69_A 13 VAVHSILYLDAH-RDSKVASRELAQSLHLNPVMIRNILSVLHKHG 56 (162)
T ss_dssp HHHHHHHHHHTT-TTSCBCHHHHHHHHTSCGGGTHHHHHHHHHTT
T ss_pred HHHHHHHHHHhC-CCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence 44333 455543 36679999999999999999999999998763
No 210
>3mkl_A HTH-type transcriptional regulator GADX; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.15A {Escherichia coli}
Probab=68.76 E-value=9.5 Score=28.03 Aligned_cols=38 Identities=3% Similarity=0.033 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q psy6534 246 VAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKL 284 (309)
Q Consensus 246 iaaAaiyla~~~~~~~~~~~~ia~~~~vs~~ti~~~~ke 284 (309)
+.-+.-|+-.. ...++++.+||+.+|+|+.++.+.+++
T Consensus 9 ~~~~~~~i~~~-~~~~~~~~~lA~~~~~S~~~l~r~fk~ 46 (120)
T 3mkl_A 9 RTRVCTVINNN-IAHEWTLARIASELLMSPSLLKKKLRE 46 (120)
T ss_dssp HHHHHHHHHTS-TTSCCCHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHh-ccCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 33333344333 345799999999999999999999876
No 211
>1rzs_A Antirepressor, regulatory protein CRO; helix-turn-helix, DNA-binding protein, structural evolution, transcription; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=68.70 E-value=3.7 Score=26.55 Aligned_cols=20 Identities=15% Similarity=0.409 Sum_probs=18.2
Q ss_pred CCHHHHHHHhCCCHHHHHHH
Q psy6534 262 RSQKEIGDIAGVAEVTIRQS 281 (309)
Q Consensus 262 ~~~~~ia~~~~vs~~ti~~~ 281 (309)
.++.++|+.+|||..||.+-
T Consensus 11 ~tq~~lA~~lGvs~~~Vs~w 30 (61)
T 1rzs_A 11 GTQRAVAKALGISDAAVSQW 30 (61)
T ss_dssp SSHHHHHHHHTCCHHHHHHC
T ss_pred CCHHHHHHHhCCCHHHHHHH
Confidence 48999999999999999875
No 212
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=68.50 E-value=7.5 Score=31.52 Aligned_cols=33 Identities=9% Similarity=-0.039 Sum_probs=29.0
Q ss_pred HhCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHh
Q psy6534 256 QASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPH 288 (309)
Q Consensus 256 ~~~~~~~~~~~ia~~~~vs~~ti~~~~kei~~~ 288 (309)
+..|.+.+++|||+.+|++..|+.++.+.|.+.
T Consensus 19 ~~~g~~~s~~eia~~lgl~~~tv~~~l~~Le~~ 51 (196)
T 3k2z_A 19 EKNGYPPSVREIARRFRITPRGALLHLIALEKK 51 (196)
T ss_dssp HHHSSCCCHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred HHhCCCCCHHHHHHHcCCCcHHHHHHHHHHHHC
Confidence 345788999999999999999999999998765
No 213
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=68.45 E-value=8.2 Score=27.93 Aligned_cols=29 Identities=14% Similarity=0.213 Sum_probs=26.6
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHh
Q psy6534 260 DKRSQKEIGDIAGVAEVTIRQSYKLMYPH 288 (309)
Q Consensus 260 ~~~~~~~ia~~~~vs~~ti~~~~kei~~~ 288 (309)
-+.+..|||+.+|++.+|+.+..+.|.+.
T Consensus 37 ~~~s~~eLa~~lgis~stvs~~L~~L~~~ 65 (108)
T 2kko_A 37 GERAVEAIATATGMNLTTASANLQALKSG 65 (108)
T ss_dssp CCEEHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 56899999999999999999999999865
No 214
>3mao_A Methionine-R-sulfoxide reductase B1; oxidoreductase, structural genomics consortium, SGC, cytoplasm, metal-binding, nucleus, selenocysteine, zinc; HET: MLI; 1.42A {Homo sapiens}
Probab=68.41 E-value=2.5 Score=30.96 Aligned_cols=31 Identities=23% Similarity=0.681 Sum_probs=26.5
Q ss_pred CCCCceecCCCCccc--cCcccccCCCcccccC
Q psy6534 20 YRAGDQICSECGLVV--GDRVIDVGSEWRTFSN 50 (309)
Q Consensus 20 ~~~G~~vC~~CG~V~--~e~~id~~~ewr~f~~ 50 (309)
.+.|.++|..||.-| .+.-+|.|.-|.+|.+
T Consensus 9 ~~~G~Y~C~~Cg~pLF~S~~KFdSg~GWPSF~~ 41 (105)
T 3mao_A 9 FEPGVYVCAKCGYELFSSRSKYAHSSPWPAFTE 41 (105)
T ss_dssp CCSEEEEETTTCCEEEEGGGEECCSSSSCEESC
T ss_pred CCCEEEEcCCCCCccccCCcccCCCCCChhhcc
Confidence 478999999999877 5567899999999975
No 215
>2vut_I AREA, nitrogen regulatory protein AREA; transcription regulation, protein-protein interactions, metal-binding, nitrate assimilation; HET: NAD; 2.3A {Emericella nidulans} SCOP: g.39.1.1 PDB: 2vus_I* 2vuu_I*
Probab=68.38 E-value=1.2 Score=27.03 Aligned_cols=28 Identities=25% Similarity=0.611 Sum_probs=17.8
Q ss_pred cCCCCCCCC--eeeeCCCCceecCCCCccc
Q psy6534 7 CCYEHPDAP--LIEDYRAGDQICSECGLVV 34 (309)
Q Consensus 7 ~Cp~C~~~~--~v~D~~~G~~vC~~CG~V~ 34 (309)
.|-+|+.+. +-..-..|..+|..||+-.
T Consensus 3 ~C~~C~tt~Tp~WR~gp~G~~LCNaCGl~~ 32 (43)
T 2vut_I 3 TCTNCFTQTTPLWRRNPEGQPLCNACGLFL 32 (43)
T ss_dssp CCSSSCCCCCSCCEECTTSCEECHHHHHHH
T ss_pred cCCccCCCCCCccccCCCCCcccHHHHHHH
Confidence 577887553 2233446778888888653
No 216
>3c7j_A Transcriptional regulator, GNTR family; structural genomics, PSI-2, protein structure initiative, midwest center for STR genomics; HET: MSE; 2.10A {Pseudomonas syringae PV}
Probab=68.31 E-value=5 Score=33.75 Aligned_cols=30 Identities=17% Similarity=0.398 Sum_probs=27.0
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHHHHh
Q psy6534 259 SDKRSQKEIGDIAGVAEVTIRQSYKLMYPH 288 (309)
Q Consensus 259 ~~~~~~~~ia~~~~vs~~ti~~~~kei~~~ 288 (309)
|.+++..++|+.+|||..|||++++.|...
T Consensus 47 G~~L~e~~La~~lgVSr~~VReAL~~L~~~ 76 (237)
T 3c7j_A 47 GTALRQQELATLFGVSRMPVREALRQLEAQ 76 (237)
T ss_dssp TCBCCHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred cCeeCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 456899999999999999999999999754
No 217
>3oou_A LIN2118 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; HET: BTB; 1.57A {Listeria innocua}
Probab=68.24 E-value=29 Score=24.64 Aligned_cols=50 Identities=18% Similarity=0.262 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHhcCCCccHHHHHHHhcccHHHHHHHHHHHHHHhcccCCCCChHHHHHH
Q psy6534 152 IASACLYIACRQEGVPRTFKEICAVSKISKKEIGRCFKLILKALETSVDLITTGDFMSR 210 (309)
Q Consensus 152 vaaAcly~acR~~~~~~tl~eia~~~~~~~~~i~~~~~~l~~~l~~~~~~~~p~~~i~~ 210 (309)
+..+.-|+--...+ ++++.++|+.++++...|.+.++. .+|. .|.+|+..
T Consensus 7 i~~~~~~i~~~~~~-~~~~~~lA~~~~~S~~~l~r~fk~---~~G~-----s~~~~~~~ 56 (108)
T 3oou_A 7 IQNVLSYITEHFSE-GMSLKTLGNDFHINAVYLGQLFQK---EMGE-----HFTDYLNR 56 (108)
T ss_dssp HHHHHHHHHHHTTS-CCCHHHHHHHHTSCHHHHHHHHHH---HHSS-----CHHHHHHH
T ss_pred HHHHHHHHHHHhcC-CCCHHHHHHHHCcCHHHHHHHHHH---HHCc-----CHHHHHHH
Confidence 34444555544444 789999999999999998777763 3443 35666653
No 218
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Probab=68.04 E-value=12 Score=30.26 Aligned_cols=30 Identities=17% Similarity=0.288 Sum_probs=27.2
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHhh
Q psy6534 260 DKRSQKEIGDIAGVAEVTIRQSYKLMYPHA 289 (309)
Q Consensus 260 ~~~~~~~ia~~~~vs~~ti~~~~kei~~~~ 289 (309)
.++|+++||+.+|+|+.|+.+..++|.+.-
T Consensus 176 ~~~t~~~lA~~lg~sr~tvsR~l~~l~~~g 205 (227)
T 3d0s_A 176 HDLTQEEIAQLVGASRETVNKALADFAHRG 205 (227)
T ss_dssp CCCCHHHHHHHHTSCHHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHhCCcHHHHHHHHHHHHHCC
Confidence 578999999999999999999999998653
No 219
>3edp_A LIN2111 protein; APC88337, listeria innocua CLIP11262, structural GE PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 2.09A {Listeria innocua}
Probab=67.98 E-value=5.1 Score=33.69 Aligned_cols=30 Identities=17% Similarity=0.250 Sum_probs=25.4
Q ss_pred CCCC-CHHHHHHHhCCCHHHHHHHHHHHHHh
Q psy6534 259 SDKR-SQKEIGDIAGVAEVTIRQSYKLMYPH 288 (309)
Q Consensus 259 ~~~~-~~~~ia~~~~vs~~ti~~~~kei~~~ 288 (309)
|.++ +..++|+.+|||..|+|++++.|...
T Consensus 30 g~~lPse~~La~~~~vSr~tvr~Al~~L~~~ 60 (236)
T 3edp_A 30 GMLMPNETALQEIYSSSRTTIRRAVDLLVEE 60 (236)
T ss_dssp CC--CCHHHHHHHTTCCHHHHHHHHHHHHHT
T ss_pred cCCCcCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 4566 78999999999999999999999865
No 220
>3pvv_A Chromosomal replication initiator protein DNAA; helix-turn-helix motif, interacting with DNAA-BOX, DNAA-box; HET: DNA; 2.00A {Mycobacterium tuberculosis} PDB: 3pvp_A*
Probab=67.91 E-value=31 Score=24.82 Aligned_cols=72 Identities=17% Similarity=0.290 Sum_probs=51.4
Q ss_pred CCChHHHHHHHHhhCCCCHHHHHHHHHHHHHhhhcCccCCCChHHHH---HHHHHHHHHhCCCCCCHHHHHHHhCCCHHH
Q psy6534 201 LITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVA---AAAIYMASQASSDKRSQKEIGDIAGVAEVT 277 (309)
Q Consensus 201 ~~~p~~~i~~~~~~L~l~~~~~~~a~~i~~~~~~~~l~~Gr~P~~ia---aAaiyla~~~~~~~~~~~~ia~~~~vs~~t 277 (309)
.++++..+..+|+.+|++.+-.. ..+|.. .++ -.|+||+-++. ..++.+|++.+|-+.+|
T Consensus 4 ~it~~~I~~~Va~~f~v~~~dl~--------------s~~R~~-~i~~aRqiAmYL~r~~t--~~Sl~~IG~~fgRDHsT 66 (101)
T 3pvv_A 4 MISAATIMAATAEYFDTTVEELR--------------GPGKTR-ALAQSRQIAMYLCRELT--DLSLPKIGQAFGRDHTT 66 (101)
T ss_dssp -CCHHHHHHHHHHHTTCCHHHHH--------------SSCCCH-HHHHHHHHHHHHHHHHC--CCCHHHHHHHTTCCHHH
T ss_pred CCCHHHHHHHHHHHHCCCHHHHh--------------CCCCCc-hhhHHHHHHHHHHHHHh--CCCHHHHHHHHCCCHHH
Confidence 45678888888899999764221 123322 222 14689988765 57899999999999999
Q ss_pred HHHHHHHHHHhh
Q psy6534 278 IRQSYKLMYPHA 289 (309)
Q Consensus 278 i~~~~kei~~~~ 289 (309)
+..+++.+.+..
T Consensus 67 V~ha~~ki~~~~ 78 (101)
T 3pvv_A 67 VMYAQRKILSEM 78 (101)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999987643
No 221
>2zkr_2 60S ribosomal protein L37E; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} SCOP: i.1.1.1
Probab=67.70 E-value=2.2 Score=30.64 Aligned_cols=22 Identities=18% Similarity=0.477 Sum_probs=17.1
Q ss_pred cCCCCCCCCeeeeCCCCceecCCCCc
Q psy6534 7 CCYEHPDAPLIEDYRAGDQICSECGL 32 (309)
Q Consensus 7 ~Cp~C~~~~~v~D~~~G~~vC~~CG~ 32 (309)
.||.||...+=. -...|..||+
T Consensus 18 lCrRCG~~sfH~----qK~~CgkCGY 39 (97)
T 2zkr_2 18 LCRRCGSKAYHL----QKSTCGKCGY 39 (97)
T ss_dssp CCTTTCSSCEET----TSCCBTTTCT
T ss_pred cCCCCCCccCcC----ccccCcccCC
Confidence 699999876522 2669999998
No 222
>2zcm_A Biofilm operon icaabcd HTH-type negative transcri regulator ICAR; helix-turn-helix, TETR family, repressor; 1.33A {Staphylococcus epidermidis} PDB: 2zcn_A
Probab=67.69 E-value=9.7 Score=29.79 Aligned_cols=42 Identities=12% Similarity=0.173 Sum_probs=31.2
Q ss_pred CChHHHHHHHHHHHHHhCCC-CCCHHHHHHHhCCCHHHHHHHHH
Q psy6534 241 RSPISVAAAAIYMASQASSD-KRSQKEIGDIAGVAEVTIRQSYK 283 (309)
Q Consensus 241 r~P~~iaaAaiyla~~~~~~-~~~~~~ia~~~~vs~~ti~~~~k 283 (309)
..|..|.-|++=+-.+ .|. ..|.++||+.+|||..||-..|.
T Consensus 7 ~~~~~Il~aA~~lf~~-~G~~~~t~~~IA~~agvs~~tlY~~F~ 49 (192)
T 2zcm_A 7 HMKDKIIDNAITLFSE-KGYDGTTLDDISKSVNIKKASLYYHYD 49 (192)
T ss_dssp -CHHHHHHHHHHHHHH-HCTTTCCHHHHHHHTTCCHHHHHHHTC
T ss_pred hhHHHHHHHHHHHHHH-cCcccCCHHHHHHHhCCChHHHHHHCC
Confidence 4456666666655544 354 68999999999999999988773
No 223
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=67.64 E-value=12 Score=25.87 Aligned_cols=25 Identities=28% Similarity=0.216 Sum_probs=20.7
Q ss_pred CCHHHHHHHhCCCHHHHHHHHHHHH
Q psy6534 262 RSQKEIGDIAGVAEVTIRQSYKLMY 286 (309)
Q Consensus 262 ~~~~~ia~~~~vs~~ti~~~~kei~ 286 (309)
.+..+||..+||+..||.+-.++..
T Consensus 39 ~s~~~iA~~~gIs~sTl~rW~k~~~ 63 (87)
T 2elh_A 39 ESKASVARDIGVPESTLRGWCKNED 63 (87)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 6899999999999999977555443
No 224
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A
Probab=67.44 E-value=6.8 Score=27.86 Aligned_cols=29 Identities=17% Similarity=0.239 Sum_probs=26.6
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHh
Q psy6534 260 DKRSQKEIGDIAGVAEVTIRQSYKLMYPH 288 (309)
Q Consensus 260 ~~~~~~~ia~~~~vs~~ti~~~~kei~~~ 288 (309)
-+.+..||++.+|++.+|+.+..+.|.+.
T Consensus 35 ~~~~~~ela~~l~is~~tvs~~L~~L~~~ 63 (102)
T 3pqk_A 35 GEFSVGELEQQIGIGQPTLSQQLGVLRES 63 (102)
T ss_dssp CCBCHHHHHHHHTCCTTHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 46899999999999999999999999765
No 225
>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B
Probab=67.18 E-value=6.4 Score=28.39 Aligned_cols=25 Identities=24% Similarity=0.218 Sum_probs=22.1
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q psy6534 260 DKRSQKEIGDIAGVAEVTIRQSYKL 284 (309)
Q Consensus 260 ~~~~~~~ia~~~~vs~~ti~~~~ke 284 (309)
...|.+|||+.+|+|+.|+++....
T Consensus 38 e~~s~~EIA~~lgiS~~tVr~~~~r 62 (99)
T 3t72_q 38 TDYTLEEVGKQFDVTRERIRQIEAK 62 (99)
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 5799999999999999999877654
No 226
>1z4h_A TORI, TOR inhibition protein; winged helix, reverse turn, protein binding, DNA binding protein; NMR {Escherichia coli}
Probab=67.05 E-value=5.1 Score=26.35 Aligned_cols=23 Identities=22% Similarity=0.042 Sum_probs=20.0
Q ss_pred CCHHHHHHHhCCCHHHHHHHHHH
Q psy6534 262 RSQKEIGDIAGVAEVTIRQSYKL 284 (309)
Q Consensus 262 ~~~~~ia~~~~vs~~ti~~~~ke 284 (309)
++.+||++.+|+|..||.+..++
T Consensus 11 l~~~eva~~lgvsrstiy~~~~~ 33 (66)
T 1z4h_A 11 VDLKFIMADTGFGKTFIYDRIKS 33 (66)
T ss_dssp ECHHHHHHHHSSCHHHHHHHHHH
T ss_pred cCHHHHHHHHCcCHHHHHHHHHC
Confidence 68999999999999999776654
No 227
>1ylf_A RRF2 family protein; structural genomics, transcription regulator, P protein structure initiative; 2.50A {Bacillus cereus atcc 14579} SCOP: a.4.5.55
Probab=67.03 E-value=7.4 Score=30.09 Aligned_cols=44 Identities=5% Similarity=-0.074 Sum_probs=35.4
Q ss_pred hhHHHHHHHHHHHHhcCCCccHHHHHHHhcccHHHHHHHHHHHHH
Q psy6534 149 NDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGRCFKLILK 193 (309)
Q Consensus 149 ~~~vaaAcly~acR~~~~~~tl~eia~~~~~~~~~i~~~~~~l~~ 193 (309)
...-+-+.+|+|-+ .+-|.+.+|||+..+++...+.+.+..|.+
T Consensus 13 ~~yAl~~L~~La~~-~~~~~~~~~iA~~~~i~~~~l~kil~~L~~ 56 (149)
T 1ylf_A 13 FSIAVHILSILKNN-PSSLCTSDYMAESVNTNPVVIRKIMSYLKQ 56 (149)
T ss_dssp HHHHHHHHHHHHHS-CGGGCCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCCCcCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 34455567777753 456899999999999999999999998877
No 228
>1j9i_A GPNU1 DBD;, terminase small subunit; DNA binding domain, homodimer, viral assembly, winged helix-turn-helix, viral protein; NMR {Enterobacteria phage lambda} SCOP: a.6.1.5
Probab=66.92 E-value=2.9 Score=27.69 Aligned_cols=22 Identities=27% Similarity=0.350 Sum_probs=18.5
Q ss_pred CCHHHHHHHhCCCHHHHHHHHH
Q psy6534 262 RSQKEIGDIAGVAEVTIRQSYK 283 (309)
Q Consensus 262 ~~~~~ia~~~~vs~~ti~~~~k 283 (309)
++.+|+|+.+|||..||.+-.+
T Consensus 3 lt~~e~a~~LgvS~~Tl~rw~~ 24 (68)
T 1j9i_A 3 VNKKQLADIFGASIRTIQNWQE 24 (68)
T ss_dssp EEHHHHHHHTTCCHHHHHHHTT
T ss_pred cCHHHHHHHHCcCHHHHHHHHH
Confidence 5789999999999999976543
No 229
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV}
Probab=66.90 E-value=8.7 Score=31.21 Aligned_cols=30 Identities=13% Similarity=0.214 Sum_probs=27.2
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHhh
Q psy6534 260 DKRSQKEIGDIAGVAEVTIRQSYKLMYPHA 289 (309)
Q Consensus 260 ~~~~~~~ia~~~~vs~~ti~~~~kei~~~~ 289 (309)
.++++++||+.+|+++.|+.+..++|.+.-
T Consensus 186 ~~lt~~~lA~~lg~sr~tvsR~l~~L~~~g 215 (230)
T 3iwz_A 186 LRVSRQELARLVGCSREMAGRVLKKLQADG 215 (230)
T ss_dssp EECCHHHHHHHHTCCHHHHHHHHHHHHHTT
T ss_pred cCCCHHHHHHHhCCcHHHHHHHHHHHHHCC
Confidence 468999999999999999999999998753
No 230
>2g2k_A EIF-5, eukaryotic translation initiation factor 5; EIF125 fold; NMR {Homo sapiens}
Probab=66.88 E-value=3.9 Score=32.73 Aligned_cols=28 Identities=25% Similarity=0.490 Sum_probs=19.7
Q ss_pred ccCCCCCCCC--eeeeCCCC--ceecCCCCcc
Q psy6534 6 VCCYEHPDAP--LIEDYRAG--DQICSECGLV 33 (309)
Q Consensus 6 ~~Cp~C~~~~--~v~D~~~G--~~vC~~CG~V 33 (309)
..|+.|++++ ++.|.+.+ .+.|..||..
T Consensus 97 VlC~~C~sPdT~L~k~~~~r~~~l~C~ACGa~ 128 (170)
T 2g2k_A 97 VLCPECENPETDLHVNPKKQTIGNSCKACGYR 128 (170)
T ss_dssp HSCTTTSSSCEEEEEETTTTEEEEEETTTCCC
T ss_pred EECCCCCCCccEEEEecCCCEEEEEccccCCc
Confidence 3599999876 44442333 6789999965
No 231
>4esj_A Type-2 restriction enzyme DPNI; restriction endonuclease-DNA complex, type IIM, type IIE, RE enzyme, DPNI; HET: DNA 6MA; 2.05A {Streptococcus pneumoniae}
Probab=66.82 E-value=3.2 Score=34.94 Aligned_cols=30 Identities=20% Similarity=0.435 Sum_probs=20.1
Q ss_pred cccCCCCCCCCeee---eCCCCceecCCCCccc
Q psy6534 5 KVCCYEHPDAPLIE---DYRAGDQICSECGLVV 34 (309)
Q Consensus 5 ~~~Cp~C~~~~~v~---D~~~G~~vC~~CG~V~ 34 (309)
.+.||.||+..+-. +.--.+..|.+|+--.
T Consensus 34 n~yCPnCG~~~l~~f~nN~PVaDF~C~~C~Eey 66 (257)
T 4esj_A 34 QSYCPNCGNNPLNHFENNRPVADFYCNHCSEEF 66 (257)
T ss_dssp HCCCTTTCCSSCEEC----CCCEEECTTTCCEE
T ss_pred CCcCCCCCChhhhhccCCCcccccccCCcchhh
Confidence 46899999865421 2334588999998543
No 232
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=66.65 E-value=16 Score=27.43 Aligned_cols=28 Identities=21% Similarity=0.355 Sum_probs=26.8
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHHh
Q psy6534 261 KRSQKEIGDIAGVAEVTIRQSYKLMYPH 288 (309)
Q Consensus 261 ~~~~~~ia~~~~vs~~ti~~~~kei~~~ 288 (309)
++++.+||+.++++.+|+.+..+.|.+.
T Consensus 54 ~~t~~ela~~l~~~~~tvs~~l~~Le~~ 81 (148)
T 3nrv_A 54 DCSVQKISDILGLDKAAVSRTVKKLEEK 81 (148)
T ss_dssp SBCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 8999999999999999999999999876
No 233
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=66.58 E-value=2.8 Score=26.87 Aligned_cols=12 Identities=25% Similarity=0.803 Sum_probs=6.7
Q ss_pred eecCCCCccccC
Q psy6534 25 QICSECGLVVGD 36 (309)
Q Consensus 25 ~vC~~CG~V~~e 36 (309)
.+|+.||+|.++
T Consensus 4 y~C~~CGyvYd~ 15 (55)
T 2v3b_B 4 WQCVVCGFIYDE 15 (55)
T ss_dssp EEETTTCCEEET
T ss_pred EEeCCCCeEECC
Confidence 456666666543
No 234
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=66.53 E-value=12 Score=25.41 Aligned_cols=29 Identities=24% Similarity=0.249 Sum_probs=25.8
Q ss_pred CCccHHHHHHHhcccHHHHHHHHHHHHHH
Q psy6534 166 VPRTFKEICAVSKISKKEIGRCFKLILKA 194 (309)
Q Consensus 166 ~~~tl~eia~~~~~~~~~i~~~~~~l~~~ 194 (309)
-+.|..|||+.++++...+.+.+.+|.+.
T Consensus 30 ~~~t~~eLA~~Lgvs~~tV~~~L~~L~~~ 58 (77)
T 1qgp_A 30 KATTAHDLSGKLGTPKKEINRVLYSLAKK 58 (77)
T ss_dssp SCEEHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 47999999999999999999998888764
No 235
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=66.49 E-value=7.1 Score=27.57 Aligned_cols=29 Identities=14% Similarity=0.171 Sum_probs=26.6
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHh
Q psy6534 260 DKRSQKEIGDIAGVAEVTIRQSYKLMYPH 288 (309)
Q Consensus 260 ~~~~~~~ia~~~~vs~~ti~~~~kei~~~ 288 (309)
.+.++.+||+.+|++..|+.+..+.|.+.
T Consensus 33 ~~~s~~ela~~l~is~~tv~~~l~~L~~~ 61 (109)
T 1sfx_A 33 GGMRVSEIARELDLSARFVRDRLKVLLKR 61 (109)
T ss_dssp CCBCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 46899999999999999999999999765
No 236
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=66.34 E-value=3 Score=27.58 Aligned_cols=24 Identities=25% Similarity=0.439 Sum_probs=11.6
Q ss_pred cCCCCCCCCeeeeCCCCceecCCCCc
Q psy6534 7 CCYEHPDAPLIEDYRAGDQICSECGL 32 (309)
Q Consensus 7 ~Cp~C~~~~~v~D~~~G~~vC~~CG~ 32 (309)
.|..||...-+ + ....+-|.+||.
T Consensus 23 ~C~~Cg~~~~l-~-~~~~iRC~~CG~ 46 (63)
T 3h0g_L 23 LCADCGARNTI-Q-AKEVIRCRECGH 46 (63)
T ss_dssp BCSSSCCBCCC-C-SSSCCCCSSSCC
T ss_pred ECCCCCCeeec-C-CCCceECCCCCc
Confidence 46666554211 1 133566666664
No 237
>3f8m_A GNTR-family protein transcriptional regulator; PHNF, HUTC, winged helix-TUR UTRA, DNA-binding, transcription regulation; 1.80A {Mycobacterium smegmatis}
Probab=66.15 E-value=5.8 Score=33.65 Aligned_cols=30 Identities=27% Similarity=0.351 Sum_probs=26.9
Q ss_pred CCCC-CHHHHHHHhCCCHHHHHHHHHHHHHh
Q psy6534 259 SDKR-SQKEIGDIAGVAEVTIRQSYKLMYPH 288 (309)
Q Consensus 259 ~~~~-~~~~ia~~~~vs~~ti~~~~kei~~~ 288 (309)
|.++ +..++|+.+|||..|+|+++++|...
T Consensus 33 g~~lPse~~La~~~~vSr~tvr~Al~~L~~~ 63 (248)
T 3f8m_A 33 GDPFPAEREIAEQFEVARETVRQALRELLID 63 (248)
T ss_dssp TCBCCCHHHHHHHTTCCHHHHHHHHHHHHHT
T ss_pred CCcCcCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 5567 78999999999999999999999865
No 238
>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...
Probab=66.12 E-value=2.8 Score=26.52 Aligned_cols=12 Identities=25% Similarity=0.789 Sum_probs=7.3
Q ss_pred eecCCCCccccC
Q psy6534 25 QICSECGLVVGD 36 (309)
Q Consensus 25 ~vC~~CG~V~~e 36 (309)
.+|+.||+|.++
T Consensus 3 ~~C~~CGyvYd~ 14 (52)
T 1yk4_A 3 LSCKICGYIYDE 14 (52)
T ss_dssp EEESSSSCEEET
T ss_pred EEeCCCCeEECC
Confidence 456666666644
No 239
>2wv0_A YVOA, HTH-type transcriptional repressor YVOA; DNA-binding, transcription regulation, transcriptional regulator, GNTR/HUTC family; 2.40A {Bacillus subtilis}
Probab=66.10 E-value=6 Score=33.42 Aligned_cols=30 Identities=20% Similarity=0.317 Sum_probs=26.6
Q ss_pred CCCC-CHHHHHHHhCCCHHHHHHHHHHHHHh
Q psy6534 259 SDKR-SQKEIGDIAGVAEVTIRQSYKLMYPH 288 (309)
Q Consensus 259 ~~~~-~~~~ia~~~~vs~~ti~~~~kei~~~ 288 (309)
|.++ +..++|+.+|||..|++++++.|...
T Consensus 31 g~~lPse~~La~~~~vSr~tvr~Al~~L~~~ 61 (243)
T 2wv0_A 31 DMPLPSEREYAEQFGISRMTVRQALSNLVNE 61 (243)
T ss_dssp TCBCCCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred cCCCcCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 4556 68999999999999999999999865
No 240
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1
Probab=66.09 E-value=5.9 Score=32.24 Aligned_cols=30 Identities=13% Similarity=0.195 Sum_probs=27.2
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHhh
Q psy6534 260 DKRSQKEIGDIAGVAEVTIRQSYKLMYPHA 289 (309)
Q Consensus 260 ~~~~~~~ia~~~~vs~~ti~~~~kei~~~~ 289 (309)
.++|+++||+.+|+|+.|+.+..++|.+.-
T Consensus 162 ~~~t~~~lA~~lG~sr~tvsR~l~~L~~~g 191 (222)
T 1ft9_A 162 VDFTVEEIANLIGSSRQTTSTALNSLIKEG 191 (222)
T ss_dssp ECCCHHHHHHHHCSCHHHHHHHHHHHHHTT
T ss_pred ccCCHHHHHHHhCCcHHHHHHHHHHHHHCC
Confidence 568999999999999999999999998653
No 241
>1hw1_A FADR, fatty acid metabolism regulator protein; helix-turn-helix, helix bundle, transcription; 1.50A {Escherichia coli} SCOP: a.4.5.6 a.78.1.1 PDB: 1hw2_A 1e2x_A 1h9g_A* 1h9t_A
Probab=65.93 E-value=5.9 Score=33.00 Aligned_cols=30 Identities=17% Similarity=0.381 Sum_probs=26.9
Q ss_pred CCCC-CHHHHHHHhCCCHHHHHHHHHHHHHh
Q psy6534 259 SDKR-SQKEIGDIAGVAEVTIRQSYKLMYPH 288 (309)
Q Consensus 259 ~~~~-~~~~ia~~~~vs~~ti~~~~kei~~~ 288 (309)
|.++ +..++|+.+|||..|||++++.|...
T Consensus 28 G~~LPsE~eLa~~~gVSR~tVReAL~~L~~e 58 (239)
T 1hw1_A 28 GTILPAERELSELIGVTRTTLREVLQRLARD 58 (239)
T ss_dssp TSBCCCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 5677 69999999999999999999999864
No 242
>2zjr_Z 50S ribosomal protein L32; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: g.41.8.5 PDB: 1j5a_M* 1jzy_M* 1jzz_M* 1k01_M* 1nkw_Z 1ond_Z* 1sm1_Z* 1yl3_5 2b66_5 2b9n_5 2b9p_5 2zjp_Y* 2zjq_Z 1jzx_M 3cf5_Y* 3dll_Y* 3pio_Z* 3pip_Z* 1nwy_Z* 1nwx_Z* ...
Probab=65.19 E-value=2.7 Score=27.46 Aligned_cols=24 Identities=21% Similarity=0.465 Sum_probs=15.9
Q ss_pred cccCCCCCCCCeeeeCCCCceecCCCCccc
Q psy6534 5 KVCCYEHPDAPLIEDYRAGDQICSECGLVV 34 (309)
Q Consensus 5 ~~~Cp~C~~~~~v~D~~~G~~vC~~CG~V~ 34 (309)
-..||.||... .--.+|.+||+-=
T Consensus 30 l~~c~~cG~~~------~pH~vc~~CG~Y~ 53 (60)
T 2zjr_Z 30 LTECPQCHGKK------LSHHICPNCGYYD 53 (60)
T ss_dssp CEECTTTCCEE------CTTBCCTTTCBSS
T ss_pred ceECCCCCCEe------CCceEcCCCCcCC
Confidence 34688887642 2467888888653
No 243
>3bwg_A Uncharacterized HTH-type transcriptional regulato; APC85486, YYDK, transcriptional regulator, structural genomi 2; 2.09A {Bacillus subtilis subsp} SCOP: a.4.5.6 d.190.1.2
Probab=65.15 E-value=6.2 Score=33.18 Aligned_cols=30 Identities=23% Similarity=0.213 Sum_probs=26.7
Q ss_pred CCCC-CHHHHHHHhCCCHHHHHHHHHHHHHh
Q psy6534 259 SDKR-SQKEIGDIAGVAEVTIRQSYKLMYPH 288 (309)
Q Consensus 259 ~~~~-~~~~ia~~~~vs~~ti~~~~kei~~~ 288 (309)
|.++ +..++|+.+|||..|+|++++.|...
T Consensus 26 g~~lPse~~La~~~~vSr~tvr~Al~~L~~~ 56 (239)
T 3bwg_A 26 GDKLPVLETLMAQFEVSKSTITKSLELLEQK 56 (239)
T ss_dssp TCBCCCHHHHHHHTTCCHHHHHHHHHHHHHT
T ss_pred CCCCcCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 4567 78999999999999999999999865
No 244
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85
Probab=64.97 E-value=12 Score=26.54 Aligned_cols=30 Identities=7% Similarity=0.040 Sum_probs=27.2
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHHHHh
Q psy6534 259 SDKRSQKEIGDIAGVAEVTIRQSYKLMYPH 288 (309)
Q Consensus 259 ~~~~~~~~ia~~~~vs~~ti~~~~kei~~~ 288 (309)
+..+++++|++.++++..|+.+..+.|.+.
T Consensus 34 ~~gi~qkeLa~~~~l~~~tvt~iLk~LE~k 63 (91)
T 2dk5_A 34 NKGIWSRDVRYKSNLPLTEINKILKNLESK 63 (91)
T ss_dssp TTCEEHHHHHHHTTCCHHHHHHHHHHHHHT
T ss_pred CCCcCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 457999999999999999999999999764
No 245
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=64.95 E-value=18 Score=25.58 Aligned_cols=40 Identities=10% Similarity=0.122 Sum_probs=33.1
Q ss_pred HHHHHHHhCCC-CCCHHHHHHHh-CCCHHHHHHHHHHHHHhh
Q psy6534 250 AIYMASQASSD-KRSQKEIGDIA-GVAEVTIRQSYKLMYPHA 289 (309)
Q Consensus 250 aiyla~~~~~~-~~~~~~ia~~~-~vs~~ti~~~~kei~~~~ 289 (309)
.|+.+|+..|- .-+...||+.+ +-++..+++||++|...-
T Consensus 43 ~IL~~cQ~~G~s~~tFa~iA~~L~Nks~nqV~~RFq~Lm~Lf 84 (95)
T 1ug2_A 43 VILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELMQLF 84 (95)
T ss_dssp HHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCChhHHHHHHHHHccCCHHHHHHHHHHHHHHH
Confidence 46778888775 67888899999 599999999999987643
No 246
>1bl0_A Protein (multiple antibiotic resistance protein), DNA (5'- D(*CP*CP*GP*AP*TP*GP*CP*CP*AP*CP*GP*TP*TP*TP*TP*GP*CP*TP*AP *AP*AP*TP* CP*C)-3')...; transcriptional activator; HET: DNA; 2.30A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 PDB: 1xs9_A
Probab=64.88 E-value=10 Score=28.31 Aligned_cols=39 Identities=8% Similarity=0.187 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q psy6534 246 VAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLM 285 (309)
Q Consensus 246 iaaAaiyla~~~~~~~~~~~~ia~~~~vs~~ti~~~~kei 285 (309)
+.-+.-|+-. -...++++.++|+.+|+|+.++.+.+++.
T Consensus 13 i~~~~~~i~~-~~~~~~sl~~lA~~~~~S~~~l~r~fk~~ 51 (129)
T 1bl0_A 13 IHSILDWIED-NLESPLSLEKVSERSGYSKWHLQRMFKKE 51 (129)
T ss_dssp HHHHHHHHHT-TTTSCCCCHHHHHHSSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHH-ccCCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 3333334443 33456999999999999999999999876
No 247
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=64.81 E-value=9.4 Score=26.40 Aligned_cols=34 Identities=18% Similarity=0.289 Sum_probs=29.0
Q ss_pred CCccHHHHHHHhcccHHHHHHHHHHHHHHhcccC
Q psy6534 166 VPRTFKEICAVSKISKKEIGRCFKLILKALETSV 199 (309)
Q Consensus 166 ~~~tl~eia~~~~~~~~~i~~~~~~l~~~l~~~~ 199 (309)
-+.|.+|||+.++++...+.....+..+.|...+
T Consensus 37 ~~~s~~EIA~~lgis~~tV~~~~~ra~~kLr~~l 70 (87)
T 1tty_A 37 KPKTLEEVGQYFNVTRERIRQIEVKALRKLRHPS 70 (87)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHHHHHHHHBTTB
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Confidence 5789999999999999999988888888877544
No 248
>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69
Probab=64.77 E-value=13 Score=26.72 Aligned_cols=31 Identities=10% Similarity=0.249 Sum_probs=27.8
Q ss_pred CCCCCHHHHHHHh-CCCHHHHHHHHHHHHHhh
Q psy6534 259 SDKRSQKEIGDIA-GVAEVTIRQSYKLMYPHA 289 (309)
Q Consensus 259 ~~~~~~~~ia~~~-~vs~~ti~~~~kei~~~~ 289 (309)
.-+.++.||++.+ |++..|+.+..+.|.+.-
T Consensus 25 ~~~~~~~eLa~~l~~is~~tls~~L~~Le~~G 56 (107)
T 2hzt_A 25 HGKKRTSELKRLMPNITQKMLTQQLRELEADG 56 (107)
T ss_dssp TCCBCHHHHHHHCTTSCHHHHHHHHHHHHHTT
T ss_pred hCCCCHHHHHHHhcCCCHHHHHHHHHHHHHCC
Confidence 4578999999999 999999999999998763
No 249
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=64.68 E-value=8.4 Score=25.37 Aligned_cols=45 Identities=9% Similarity=0.035 Sum_probs=28.3
Q ss_pred ccHHHHHHHhcccHHHHHHHHHHHHHHhccc---CCCCChHHHHHHHHhhCCCC
Q psy6534 168 RTFKEICAVSKISKKEIGRCFKLILKALETS---VDLITTGDFMSRFCSNLSLP 218 (309)
Q Consensus 168 ~tl~eia~~~~~~~~~i~~~~~~l~~~l~~~---~~~~~p~~~i~~~~~~L~l~ 218 (309)
.|++|||+.+|++...+.+.++ +.. ....+...-|...+.+||..
T Consensus 1 ~T~~diA~~aGVS~sTVSrvLn------g~~~~~~vs~et~~rI~~aa~~lgY~ 48 (65)
T 1uxc_A 1 MKLDEIARLAGVSRTTASYVIN------GKAKQYRVSDKTVEKVMAVVREHNYH 48 (65)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHH------TCTTTTTCTTHHHHHHHHHHHHHTCC
T ss_pred CCHHHHHHHHCcCHHHHHHHHc------CCCCCCCCCHHHHHHHHHHHHHhCCC
Confidence 3789999999999988877654 211 11122334555666667653
No 250
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=64.56 E-value=5.5 Score=32.08 Aligned_cols=30 Identities=13% Similarity=0.230 Sum_probs=27.2
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHhh
Q psy6534 260 DKRSQKEIGDIAGVAEVTIRQSYKLMYPHA 289 (309)
Q Consensus 260 ~~~~~~~ia~~~~vs~~ti~~~~kei~~~~ 289 (309)
.++|+++||+.+|+++.|+.+..++|.+.-
T Consensus 162 ~~~t~~~lA~~lg~sr~tvsR~l~~l~~~g 191 (216)
T 4ev0_A 162 FQIRHHELAALAGTSRETVSRVLHALAEEG 191 (216)
T ss_dssp EECCHHHHHHHHTSCHHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHCC
Confidence 468999999999999999999999998753
No 251
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=64.52 E-value=14 Score=25.43 Aligned_cols=34 Identities=24% Similarity=0.256 Sum_probs=27.7
Q ss_pred HHhcC--CCccHHHHHHHhcccHHHHHHHHHHHHHH
Q psy6534 161 CRQEG--VPRTFKEICAVSKISKKEIGRCFKLILKA 194 (309)
Q Consensus 161 cR~~~--~~~tl~eia~~~~~~~~~i~~~~~~l~~~ 194 (309)
.+.++ .+.|..|||..++++...+.+.+.+|.+.
T Consensus 19 L~~~~pg~~~t~~eLA~~Lgvsr~tV~~~L~~Le~~ 54 (81)
T 1qbj_A 19 LEELGEGKATTAHDLSGKLGTPKKEINRVLYSLAKK 54 (81)
T ss_dssp HHHHCTTCCBCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred HHHcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 34444 47999999999999999999998888763
No 252
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=64.40 E-value=9.3 Score=28.67 Aligned_cols=30 Identities=10% Similarity=0.050 Sum_probs=27.3
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHHHHh
Q psy6534 259 SDKRSQKEIGDIAGVAEVTIRQSYKLMYPH 288 (309)
Q Consensus 259 ~~~~~~~~ia~~~~vs~~ti~~~~kei~~~ 288 (309)
+.+.++.+||+.+|++.+|+.+..+.|.+.
T Consensus 39 ~~~~t~~ela~~l~~~~stvs~~l~~L~~~ 68 (152)
T 1ku9_A 39 DKPLTISDIMEELKISKGNVSMSLKKLEEL 68 (152)
T ss_dssp SSCEEHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 457999999999999999999999999875
No 253
>2l1u_A MSRB2, methionine-R-sulfoxide reductase B2, mitochondria; methionine sulfoxide reductase, oxidoreductase; NMR {Mus musculus}
Probab=64.26 E-value=3.7 Score=31.78 Aligned_cols=32 Identities=22% Similarity=0.490 Sum_probs=26.6
Q ss_pred CCCCceecCCCCccc--cCcccccCCCcccccCC
Q psy6534 20 YRAGDQICSECGLVV--GDRVIDVGSEWRTFSNE 51 (309)
Q Consensus 20 ~~~G~~vC~~CG~V~--~e~~id~~~ewr~f~~~ 51 (309)
...|.++|..||.-| .+.-+|.|.-|.+|.+.
T Consensus 33 ~~~G~Y~C~~Cg~pLF~S~~KFdSg~GWPSF~~p 66 (143)
T 2l1u_A 33 KETGMYHCVCCDSPLFSSEKKYCSGTGWPSFSEA 66 (143)
T ss_dssp CCCEEEEESSSSCEEEEGGGBCTTTTCCSBBSSC
T ss_pred cCCeEEEeCCCCCeeecCcccccCCCCChhhchh
Confidence 578999999999877 55678889999999653
No 254
>1uly_A Hypothetical protein PH1932; helix-turn-helix, structural genomics, DNA binding protein; 2.50A {Pyrococcus horikoshii} SCOP: a.4.5.58 PDB: 2cwe_A
Probab=64.00 E-value=11 Score=30.60 Aligned_cols=29 Identities=14% Similarity=0.198 Sum_probs=26.9
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHh
Q psy6534 260 DKRSQKEIGDIAGVAEVTIRQSYKLMYPH 288 (309)
Q Consensus 260 ~~~~~~~ia~~~~vs~~ti~~~~kei~~~ 288 (309)
-+.+..++|+.+|+|..|++++.+.|.+.
T Consensus 32 ~~~s~~eLA~~lglS~stv~~~l~~Le~~ 60 (192)
T 1uly_A 32 KEMTISQLSEILGKTPQTIYHHIEKLKEA 60 (192)
T ss_dssp CCBCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 47999999999999999999999999765
No 255
>3omt_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.65A {Cytophaga hutchinsonii}
Probab=63.96 E-value=5.5 Score=26.24 Aligned_cols=23 Identities=4% Similarity=0.039 Sum_probs=20.2
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHH
Q psy6534 261 KRSQKEIGDIAGVAEVTIRQSYK 283 (309)
Q Consensus 261 ~~~~~~ia~~~~vs~~ti~~~~k 283 (309)
.++++++|+.+||+..||.+..+
T Consensus 21 glsq~~lA~~~gis~~~is~~e~ 43 (73)
T 3omt_A 21 GKTNLWLTETLDKNKTTVSKWCT 43 (73)
T ss_dssp TCCHHHHHHHTTCCHHHHHHHHT
T ss_pred CCCHHHHHHHHCcCHHHHHHHHc
Confidence 57999999999999999987654
No 256
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*
Probab=63.58 E-value=14 Score=27.85 Aligned_cols=29 Identities=7% Similarity=0.093 Sum_probs=26.4
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHh
Q psy6534 260 DKRSQKEIGDIAGVAEVTIRQSYKLMYPH 288 (309)
Q Consensus 260 ~~~~~~~ia~~~~vs~~ti~~~~kei~~~ 288 (309)
..+++.+||+.+|++.+|+.+..+.|.+.
T Consensus 21 ~~~~~~ela~~l~vs~~tvs~~l~~Le~~ 49 (142)
T 1on2_A 21 GYARVSDIAEALAVHPSSVTKMVQKLDKD 49 (142)
T ss_dssp SSCCHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHC
Confidence 46899999999999999999999999764
No 257
>2xi8_A Putative transcription regulator; HTH DNA-binding motif; HET: GOL; 1.21A {Enterococcus faecalis} PDB: 2gzu_A 1utx_A* 2xj3_A 2xiu_A
Probab=63.54 E-value=5.9 Score=25.18 Aligned_cols=24 Identities=33% Similarity=0.302 Sum_probs=20.4
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHH
Q psy6534 260 DKRSQKEIGDIAGVAEVTIRQSYK 283 (309)
Q Consensus 260 ~~~~~~~ia~~~~vs~~ti~~~~k 283 (309)
..++++++|+.+|++..||.+..+
T Consensus 13 ~g~s~~~lA~~~gis~~~i~~~e~ 36 (66)
T 2xi8_A 13 KKISQSELAALLEVSRQTINGIEK 36 (66)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHc
Confidence 457999999999999999987543
No 258
>3pvv_A Chromosomal replication initiator protein DNAA; helix-turn-helix motif, interacting with DNAA-BOX, DNAA-box; HET: DNA; 2.00A {Mycobacterium tuberculosis} PDB: 3pvp_A*
Probab=63.54 E-value=11 Score=27.23 Aligned_cols=41 Identities=12% Similarity=0.187 Sum_probs=33.2
Q ss_pred HHHHHHHhcCCCccHHHHHHHhcccHHHHHHHHHHHHHHhccc
Q psy6534 156 CLYIACRQEGVPRTFKEICAVSKISKKEIGRCFKLILKALETS 198 (309)
Q Consensus 156 cly~acR~~~~~~tl~eia~~~~~~~~~i~~~~~~l~~~l~~~ 198 (309)
+.|++ |+. ...++.+|...+|-|-..+..+++++.+.+..+
T Consensus 41 AmYL~-r~~-t~~Sl~~IG~~fgRDHsTV~ha~~ki~~~~~~d 81 (101)
T 3pvv_A 41 AMYLC-REL-TDLSLPKIGQAFGRDHTTVMYAQRKILSEMAER 81 (101)
T ss_dssp HHHHH-HHH-CCCCHHHHHHHTTCCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHH-HHH-hCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHhC
Confidence 45665 433 578899999999999999999999999887754
No 259
>3e0o_A Peptide methionine sulfoxide reductase MSRB; oxidoreductase; 2.60A {Bacillus subtilis} SCOP: b.88.1.3 PDB: 1xm0_A 2kzn_A
Probab=63.39 E-value=3.8 Score=31.75 Aligned_cols=32 Identities=16% Similarity=0.277 Sum_probs=26.9
Q ss_pred eCCCCceecCCCCccc--cCcccccCCCcccccC
Q psy6534 19 DYRAGDQICSECGLVV--GDRVIDVGSEWRTFSN 50 (309)
Q Consensus 19 D~~~G~~vC~~CG~V~--~e~~id~~~ewr~f~~ 50 (309)
....|.++|..||.-| .+.-+|.|.-|.+|.+
T Consensus 37 ~~~~G~Y~C~~Cg~pLF~S~~KfdSg~GWPSF~~ 70 (144)
T 3e0o_A 37 HKEEGLYVDIVSGKPLFTSKDKFDSQCGWPSFTK 70 (144)
T ss_dssp CCCSEEEEETTTCCEEEETTTBCCCTTSSCEESC
T ss_pred cCCCEEEEeCCCCcccccCcccccCCCCCcccCc
Confidence 3568999999999877 5667899999999975
No 260
>2k8d_A Peptide methionine sulfoxide reductase MSRB; thermophilic, Zn binding, metal-binding, oxidoreductase; NMR {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=63.37 E-value=4.1 Score=31.80 Aligned_cols=33 Identities=24% Similarity=0.483 Sum_probs=27.1
Q ss_pred eCCCCceecCCCCccc--cCcccccCCCcccccCC
Q psy6534 19 DYRAGDQICSECGLVV--GDRVIDVGSEWRTFSNE 51 (309)
Q Consensus 19 D~~~G~~vC~~CG~V~--~e~~id~~~ewr~f~~~ 51 (309)
....|.++|..||.-| .+.-+|.|.-|.+|.+.
T Consensus 56 ~~~~G~Y~C~~Cg~pLF~S~~KFdSg~GWPSF~~p 90 (151)
T 2k8d_A 56 LHDDGIYRCICCGTDLFDSETKFDSGTGWPSFYDV 90 (151)
T ss_dssp CCSCSEEEETTTTEEEEEGGGSCCSTTCCSEESCC
T ss_pred CCCCEEEEecCCCCcccCCcccccCCCCCcccCcc
Confidence 3578999999999877 55678899999999754
No 261
>3eet_A Putative GNTR-family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.97A {Streptomyces avermitilis}
Probab=63.30 E-value=7 Score=33.67 Aligned_cols=31 Identities=19% Similarity=0.288 Sum_probs=27.1
Q ss_pred CCCC-CHHHHHHHhCCCHHHHHHHHHHHHHhh
Q psy6534 259 SDKR-SQKEIGDIAGVAEVTIRQSYKLMYPHA 289 (309)
Q Consensus 259 ~~~~-~~~~ia~~~~vs~~ti~~~~kei~~~~ 289 (309)
|.++ +..++|+.+|||..|+|+++..|...-
T Consensus 50 g~~lPse~~La~~~~vSr~tvr~Al~~L~~~G 81 (272)
T 3eet_A 50 HTRLPSQARIREEYGVSDTVALEARKVLMAEG 81 (272)
T ss_dssp TSBCCCHHHHHHHHTCCHHHHHHHHHHHHHTT
T ss_pred cCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCC
Confidence 4566 799999999999999999999998753
No 262
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=63.12 E-value=12 Score=27.82 Aligned_cols=29 Identities=14% Similarity=0.124 Sum_probs=27.1
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHh
Q psy6534 260 DKRSQKEIGDIAGVAEVTIRQSYKLMYPH 288 (309)
Q Consensus 260 ~~~~~~~ia~~~~vs~~ti~~~~kei~~~ 288 (309)
.++++.+||+.++++.+|+.+..+.|.+.
T Consensus 46 ~~~t~~ela~~l~~~~~tvs~~l~~Le~~ 74 (139)
T 3eco_A 46 DGLTQNDIAKALQRTGPTVSNLLRNLERK 74 (139)
T ss_dssp TCEEHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCcCHHHHHHHhCCCcccHHHHHHHHHHC
Confidence 57899999999999999999999999876
No 263
>2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} SCOP: a.35.1.2 PDB: 3jxb_C 3jxc_L 3jxd_L
Probab=62.99 E-value=6.1 Score=25.29 Aligned_cols=22 Identities=36% Similarity=0.484 Sum_probs=19.3
Q ss_pred CCCHHHHHHHhCCCHHHHHHHH
Q psy6534 261 KRSQKEIGDIAGVAEVTIRQSY 282 (309)
Q Consensus 261 ~~~~~~ia~~~~vs~~ti~~~~ 282 (309)
.+++.++|+.+|++..||.+..
T Consensus 18 g~s~~~lA~~~gis~~~i~~~e 39 (68)
T 2r1j_L 18 KIRQAALGKMVGVSNVAISQWE 39 (68)
T ss_dssp TCCHHHHHHHHTSCHHHHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHHHH
Confidence 5799999999999999997754
No 264
>3sxy_A Transcriptional regulator, GNTR family; transcription factor, metal-binding, structur genomics, PSI-2, protein structure initiative; 1.65A {Thermotoga maritima} PDB: 3dbw_A 3fms_A*
Probab=62.93 E-value=6.2 Score=32.49 Aligned_cols=30 Identities=13% Similarity=0.297 Sum_probs=27.3
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHHHHh
Q psy6534 259 SDKRSQKEIGDIAGVAEVTIRQSYKLMYPH 288 (309)
Q Consensus 259 ~~~~~~~~ia~~~~vs~~ti~~~~kei~~~ 288 (309)
|.+++..++|+.+|||..+||.+++.|...
T Consensus 33 G~~L~e~~La~~lgVSRtpVREAL~~L~~e 62 (218)
T 3sxy_A 33 GEKLNVRELSEKLGISFTPVRDALLQLATE 62 (218)
T ss_dssp TCEECHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred CCEeCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 567899999999999999999999999765
No 265
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=62.80 E-value=21 Score=23.66 Aligned_cols=32 Identities=13% Similarity=0.052 Sum_probs=27.7
Q ss_pred CccHHHHHHHhcccHHHHHHHHHHHHHHhccc
Q psy6534 167 PRTFKEICAVSKISKKEIGRCFKLILKALETS 198 (309)
Q Consensus 167 ~~tl~eia~~~~~~~~~i~~~~~~l~~~l~~~ 198 (309)
..+.+|||+.++++...+.....++.+.|+..
T Consensus 31 g~s~~eIA~~l~is~~tV~~~~~r~~~kl~~~ 62 (79)
T 1x3u_A 31 GLPNKSIAYDLDISPRTVEVHRANVMAKMKAK 62 (79)
T ss_dssp TCCHHHHHHHTTSCHHHHHHHHHHHHHHTTCC
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHHHHcCC
Confidence 46889999999999999998888888888753
No 266
>3cxk_A Methionine-R-sulfoxide reductase; structural genomics, MSRB, oxidoreductase, MIC labcard, PSI-2, protein structure initiative; 1.70A {Burkholderia pseudomallei strain} PDB: 3cez_A
Probab=62.70 E-value=3.7 Score=32.51 Aligned_cols=32 Identities=22% Similarity=0.478 Sum_probs=26.6
Q ss_pred CCCCceecCCCCccc--cCcccccCCCcccccCC
Q psy6534 20 YRAGDQICSECGLVV--GDRVIDVGSEWRTFSNE 51 (309)
Q Consensus 20 ~~~G~~vC~~CG~V~--~e~~id~~~ewr~f~~~ 51 (309)
.+.|.++|..||.-| .+.-+|.|.-|.+|.+.
T Consensus 69 ~~~GiY~C~~Cg~pLF~S~~KFdSGcGWPSF~~p 102 (164)
T 3cxk_A 69 EDAGIYHCVVCGTALFESGAKYHSGCGWPSYFKP 102 (164)
T ss_dssp CCSEEEEETTTCCEEEEGGGBCCCCSSSCEESSC
T ss_pred CCCeEEEccCCCccccCCchhccCCCCCcccCcc
Confidence 568999999999877 55578899999999754
No 267
>1l3l_A Transcriptional activator protein TRAR; helix-turn-helix DNA binding motif, alpha/beta/alpha sandwich; HET: LAE; 1.66A {Agrobacterium tumefaciens} SCOP: a.4.6.2 d.110.5.1 PDB: 1h0m_A*
Probab=62.52 E-value=9.3 Score=31.77 Aligned_cols=30 Identities=20% Similarity=0.286 Sum_probs=26.5
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHhh
Q psy6534 260 DKRSQKEIGDIAGVAEVTIRQSYKLMYPHA 289 (309)
Q Consensus 260 ~~~~~~~ia~~~~vs~~ti~~~~kei~~~~ 289 (309)
...+.+|||+.+|+|+.|++...+.+++..
T Consensus 187 ~g~s~~eIa~~l~is~~tV~~~~~~~~~kl 216 (234)
T 1l3l_A 187 VGKTMEEIADVEGVKYNSVRVKLREAMKRF 216 (234)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHHHHHHHh
Confidence 567999999999999999999998887654
No 268
>1r69_A Repressor protein CI; gene regulating protein; 2.00A {Phage 434} SCOP: a.35.1.2 PDB: 1pra_A 1per_L 1rpe_L* 2or1_L* 1r63_A 2r63_A 1sq8_A
Probab=62.48 E-value=6.2 Score=25.36 Aligned_cols=23 Identities=22% Similarity=0.189 Sum_probs=19.8
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHH
Q psy6534 260 DKRSQKEIGDIAGVAEVTIRQSY 282 (309)
Q Consensus 260 ~~~~~~~ia~~~~vs~~ti~~~~ 282 (309)
..+++.++|+.+|++..||.+..
T Consensus 13 ~glsq~~lA~~~gis~~~i~~~e 35 (69)
T 1r69_A 13 LGLNQAELAQKVGTTQQSIEQLE 35 (69)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHH
Confidence 45799999999999999997754
No 269
>1s24_A Rubredoxin 2; electron transport; NMR {Pseudomonas oleovorans} SCOP: g.41.5.1
Probab=62.36 E-value=3.3 Score=29.25 Aligned_cols=16 Identities=25% Similarity=0.526 Sum_probs=12.5
Q ss_pred CCceecCCCCccccCc
Q psy6534 22 AGDQICSECGLVVGDR 37 (309)
Q Consensus 22 ~G~~vC~~CG~V~~e~ 37 (309)
....+|..||+|.++.
T Consensus 33 m~~y~C~vCGyvYD~~ 48 (87)
T 1s24_A 33 YLKWICITCGHIYDEA 48 (87)
T ss_dssp CCEEEETTTTEEEETT
T ss_pred CceEECCCCCeEecCC
Confidence 4578999999998653
No 270
>3kz3_A Repressor protein CI; five helix bundle, DNA-binding, transcription, transcription regulation; 1.64A {Enterobacteria phage lambda}
Probab=62.35 E-value=5.9 Score=26.73 Aligned_cols=23 Identities=13% Similarity=0.225 Sum_probs=20.0
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHH
Q psy6534 260 DKRSQKEIGDIAGVAEVTIRQSY 282 (309)
Q Consensus 260 ~~~~~~~ia~~~~vs~~ti~~~~ 282 (309)
..+|+.++|+.+||+..||.+..
T Consensus 24 ~gltq~~lA~~~gvs~~~is~~e 46 (80)
T 3kz3_A 24 LGLSYESVADKMGMGQSAVAALF 46 (80)
T ss_dssp HTCCHHHHHHHTTSCHHHHHHHH
T ss_pred cCCCHHHHHHHhCcCHHHHHHHH
Confidence 45799999999999999998754
No 271
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=62.21 E-value=13 Score=25.16 Aligned_cols=30 Identities=7% Similarity=0.025 Sum_probs=26.9
Q ss_pred CCCCHHHHHHHh-----CCCHHHHHHHHHHHHHhh
Q psy6534 260 DKRSQKEIGDIA-----GVAEVTIRQSYKLMYPHA 289 (309)
Q Consensus 260 ~~~~~~~ia~~~-----~vs~~ti~~~~kei~~~~ 289 (309)
.+.+..||++.+ +++..||.+..+.|.+.-
T Consensus 32 ~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~G 66 (83)
T 2fu4_A 32 HHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAG 66 (83)
T ss_dssp SSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 579999999999 999999999999988753
No 272
>3t76_A VANU, transcriptional regulator vanug; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.12A {Enterococcus faecalis} PDB: 3t75_A* 3tyr_A* 3tys_A*
Probab=62.20 E-value=6.2 Score=27.71 Aligned_cols=24 Identities=21% Similarity=0.268 Sum_probs=20.8
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHH
Q psy6534 260 DKRSQKEIGDIAGVAEVTIRQSYK 283 (309)
Q Consensus 260 ~~~~~~~ia~~~~vs~~ti~~~~k 283 (309)
..+||.++|+.+||+..||.+..+
T Consensus 36 ~glTq~eLA~~~GiS~~tis~iE~ 59 (88)
T 3t76_A 36 RDMKKGELREAVGVSKSTFAKLGK 59 (88)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHc
Confidence 467999999999999999987654
No 273
>1zug_A Phage 434 CRO protein; gene regulating protein, transcription regulation; NMR {Phage 434} SCOP: a.35.1.2 PDB: 2cro_A 3cro_L*
Probab=62.04 E-value=6.4 Score=25.49 Aligned_cols=23 Identities=30% Similarity=0.287 Sum_probs=19.9
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHH
Q psy6534 260 DKRSQKEIGDIAGVAEVTIRQSY 282 (309)
Q Consensus 260 ~~~~~~~ia~~~~vs~~ti~~~~ 282 (309)
..+++.++|+.+|++..||.+..
T Consensus 15 ~glsq~~lA~~~gis~~~i~~~e 37 (71)
T 1zug_A 15 LKMTQTELATKAGVKQQSIQLIE 37 (71)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHH
T ss_pred cCCCHHHHHHHhCCCHHHHHHHH
Confidence 45799999999999999997754
No 274
>1zx4_A P1 PARB, plasmid partition PAR B protein, PARB; translation; HET: CIT; 2.98A {Enterobacteria phage P1} PDB: 2ntz_A
Probab=62.03 E-value=16 Score=29.83 Aligned_cols=25 Identities=24% Similarity=0.428 Sum_probs=22.2
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q psy6534 260 DKRSQKEIGDIAGVAEVTIRQSYKL 284 (309)
Q Consensus 260 ~~~~~~~ia~~~~vs~~ti~~~~ke 284 (309)
...||.|||+.+|||..+|.+..+.
T Consensus 23 ~g~tQ~eIA~~lGiSr~~VSR~L~~ 47 (192)
T 1zx4_A 23 DGMSQKDIAAKEGLSQAKVTRALQA 47 (192)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHHH
T ss_pred cCCCHHHHHHHhCcCHHHHHHHHHH
Confidence 4499999999999999999997665
No 275
>2kae_A GATA-type transcription factor; zinc finger, GATA-type, DNA; NMR {Caenorhabditis elegans}
Probab=61.95 E-value=1.7 Score=29.55 Aligned_cols=9 Identities=22% Similarity=0.615 Sum_probs=4.6
Q ss_pred eecCCCCcc
Q psy6534 25 QICSECGLV 33 (309)
Q Consensus 25 ~vC~~CG~V 33 (309)
++|..||+-
T Consensus 31 ~LCNACGl~ 39 (71)
T 2kae_A 31 IQCNACFIY 39 (71)
T ss_dssp CCSSHHHHH
T ss_pred ccchHHHHH
Confidence 555555544
No 276
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=61.90 E-value=9 Score=24.15 Aligned_cols=32 Identities=19% Similarity=0.108 Sum_probs=27.7
Q ss_pred CccHHHHHHHhcccHHHHHHHHHHHHHHhccc
Q psy6534 167 PRTFKEICAVSKISKKEIGRCFKLILKALETS 198 (309)
Q Consensus 167 ~~tl~eia~~~~~~~~~i~~~~~~l~~~l~~~ 198 (309)
..+.+|||+.++++...+......+.+.|+..
T Consensus 13 g~s~~eIA~~l~is~~tV~~~~~~~~~kl~~~ 44 (61)
T 2jpc_A 13 GYTNHGISEKLHISIKTVETHRMNMMRKLQVH 44 (61)
T ss_dssp SCCSHHHHHHTCSCHHHHHHHHHHHHHHHTCS
T ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHHHHCCC
Confidence 35779999999999999999888888888753
No 277
>3ihu_A Transcriptional regulator, GNTR family; YP_298823.1, DNA binding protein, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.92A {Ralstonia eutropha}
Probab=61.79 E-value=6.5 Score=32.46 Aligned_cols=30 Identities=10% Similarity=0.240 Sum_probs=27.3
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHHHHh
Q psy6534 259 SDKRSQKEIGDIAGVAEVTIRQSYKLMYPH 288 (309)
Q Consensus 259 ~~~~~~~~ia~~~~vs~~ti~~~~kei~~~ 288 (309)
|.+++..++|+.+|||..+||.+++.|...
T Consensus 37 G~~L~E~~La~~lgVSRtpVREAl~~L~~e 66 (222)
T 3ihu_A 37 GQRLVETDLVAHFGVGRNSVREALQRLAAE 66 (222)
T ss_dssp TCEECHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCccCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 567889999999999999999999999764
No 278
>3fmy_A HTH-type transcriptional regulator MQSA (YGIT/B3021); helix-turn-helix, DNA-binding, transcription regulation, DNA binding protein; HET: MEQ; 1.40A {Escherichia coli k-12}
Probab=61.76 E-value=4.5 Score=27.02 Aligned_cols=22 Identities=23% Similarity=0.148 Sum_probs=19.5
Q ss_pred CCCCHHHHHHHhCCCHHHHHHH
Q psy6534 260 DKRSQKEIGDIAGVAEVTIRQS 281 (309)
Q Consensus 260 ~~~~~~~ia~~~~vs~~ti~~~ 281 (309)
..+|++++|+.+||+..||.+-
T Consensus 23 ~gltq~elA~~~gvs~~tis~~ 44 (73)
T 3fmy_A 23 LSLTQKEASEIFGGGVNAFSRY 44 (73)
T ss_dssp TTCCHHHHHHHHCSCTTHHHHH
T ss_pred cCCCHHHHHHHhCcCHHHHHHH
Confidence 4689999999999999998774
No 279
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=61.74 E-value=5.8 Score=31.53 Aligned_cols=32 Identities=22% Similarity=0.108 Sum_probs=26.0
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHhhcc
Q psy6534 260 DKRSQKEIGDIAGVAEVTIRQSYKLMYPHASK 291 (309)
Q Consensus 260 ~~~~~~~ia~~~~vs~~ti~~~~kei~~~~~~ 291 (309)
...+.+|||+.+|+|+.|++++.....+...+
T Consensus 155 ~g~s~~EIA~~lgis~~tV~~~l~ra~~~Lr~ 186 (194)
T 1or7_A 155 DGLSYEEIAAIMDCPVGTVRSRIFRAREAIDN 186 (194)
T ss_dssp TCCCHHHHHHHTTSCHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 45899999999999999998888776554443
No 280
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=61.59 E-value=9.7 Score=27.33 Aligned_cols=29 Identities=14% Similarity=0.208 Sum_probs=26.3
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHh
Q psy6534 260 DKRSQKEIGDIAGVAEVTIRQSYKLMYPH 288 (309)
Q Consensus 260 ~~~~~~~ia~~~~vs~~ti~~~~kei~~~ 288 (309)
-+.+..+||+.+|++.+|+.+..+.|.+.
T Consensus 38 ~~~~~~ela~~l~is~stvs~~L~~L~~~ 66 (106)
T 1r1u_A 38 SEASVGHISHQLNLSQSNVSHQLKLLKSV 66 (106)
T ss_dssp CCBCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 46899999999999999999999999854
No 281
>3hcg_A Peptide methionine sulfoxide reductase MSRA/MSRB; PILB, methionine sulfoxide reductase B, reduced form, disulfide bond; 1.82A {Neisseria meningitidis serogroup A} SCOP: b.88.1.3 PDB: 3hch_A* 1l1d_A
Probab=61.56 E-value=3.9 Score=31.79 Aligned_cols=31 Identities=19% Similarity=0.439 Sum_probs=26.6
Q ss_pred CCCCceecCCCCccc--cCcccccCCCcccccC
Q psy6534 20 YRAGDQICSECGLVV--GDRVIDVGSEWRTFSN 50 (309)
Q Consensus 20 ~~~G~~vC~~CG~V~--~e~~id~~~ewr~f~~ 50 (309)
...|.++|..||.-| .+.-+|.|.-|.+|.+
T Consensus 39 ~~~G~Y~C~~Cg~pLF~S~~KFdSg~GWPSF~~ 71 (146)
T 3hcg_A 39 FKPGIYVDVVSGEPLFSSADKYDSGCGWPSFTR 71 (146)
T ss_dssp CCSEEEEETTTCCEEEEGGGEECCSSSSCEESS
T ss_pred CCCEEEEecCCCcccccCcccccCCCCChhhcc
Confidence 578999999999877 5667899999999975
No 282
>2k9q_A Uncharacterized protein; all helix, helix-turn-helix, plasmid, structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=61.52 E-value=6.5 Score=26.25 Aligned_cols=23 Identities=9% Similarity=0.118 Sum_probs=19.7
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHH
Q psy6534 260 DKRSQKEIGDIAGVAEVTIRQSY 282 (309)
Q Consensus 260 ~~~~~~~ia~~~~vs~~ti~~~~ 282 (309)
..++++++|+.+||+..||.+.-
T Consensus 14 ~glsq~~lA~~~gis~~~i~~~e 36 (77)
T 2k9q_A 14 LSLTAKSVAEEMGISRQQLCNIE 36 (77)
T ss_dssp HTCCHHHHHHHHTSCHHHHHHHH
T ss_pred cCCCHHHHHHHhCCCHHHHHHHH
Confidence 35799999999999999997753
No 283
>1l1o_C Replication protein A 70 kDa DNA-binding subunit; eukaryotic SSB, ssDNA binding protein, OB-fold; 2.80A {Homo sapiens} SCOP: b.40.4.3
Probab=61.48 E-value=3.9 Score=33.04 Aligned_cols=26 Identities=19% Similarity=0.401 Sum_probs=20.5
Q ss_pred cCCC--CCCCCeeeeCCCCceecCCCCccc
Q psy6534 7 CCYE--HPDAPLIEDYRAGDQICSECGLVV 34 (309)
Q Consensus 7 ~Cp~--C~~~~~v~D~~~G~~vC~~CG~V~ 34 (309)
.||. |++. +.+...|...|..||...
T Consensus 45 aC~~~~CnKK--v~~~~~g~~~CekC~~~~ 72 (181)
T 1l1o_C 45 ACPTQDCNKK--VIDQQNGLYRCEKCDTEF 72 (181)
T ss_dssp BCCSTTCCCB--CEEETTTEEEETTTTEEE
T ss_pred CCCchhcCCc--cccCCCCeEECCCCCCcC
Confidence 6999 9874 345567999999999665
No 284
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=61.13 E-value=45 Score=24.31 Aligned_cols=30 Identities=17% Similarity=0.150 Sum_probs=27.2
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHHHHh
Q psy6534 259 SDKRSQKEIGDIAGVAEVTIRQSYKLMYPH 288 (309)
Q Consensus 259 ~~~~~~~~ia~~~~vs~~ti~~~~kei~~~ 288 (309)
+.++++.+||+.+|++.+|+.+..+.|.+.
T Consensus 41 ~~~~~~~ela~~l~~s~~tvs~~l~~L~~~ 70 (138)
T 3bpv_A 41 EPGIKQDELATFFHVDKGTIARTLRRLEES 70 (138)
T ss_dssp STTCBHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred cCCCCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 357899999999999999999999999875
No 285
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=61.08 E-value=9 Score=27.60 Aligned_cols=29 Identities=10% Similarity=0.123 Sum_probs=26.3
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHh
Q psy6534 260 DKRSQKEIGDIAGVAEVTIRQSYKLMYPH 288 (309)
Q Consensus 260 ~~~~~~~ia~~~~vs~~ti~~~~kei~~~ 288 (309)
-+.+..+||+.+|++..|+.+..+.|.+.
T Consensus 33 ~~~~~~ela~~l~is~~tv~~~l~~L~~~ 61 (114)
T 2oqg_A 33 ADQSASSLATRLPVSRQAIAKHLNALQAC 61 (114)
T ss_dssp SCBCHHHHHHHSSSCHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 45899999999999999999999999764
No 286
>3dwd_A ADP-ribosylation factor GTPase-activating protein; GAP, structural genomics consorti ER-golgi transport, golgi apparatus, GTPase activation; 2.40A {Homo sapiens}
Probab=61.05 E-value=2.7 Score=32.76 Aligned_cols=32 Identities=25% Similarity=0.283 Sum_probs=24.4
Q ss_pred CCCcccCCCCCCCCeee-eCCCCceecCCCCccc
Q psy6534 2 NINKVCCYEHPDAPLIE-DYRAGDQICSECGLVV 34 (309)
Q Consensus 2 ~~~~~~Cp~C~~~~~v~-D~~~G~~vC~~CG~V~ 34 (309)
++|. .|-+||..+..+ ...-|..+|.+|.-|.
T Consensus 36 p~N~-~CaDCga~~P~WaS~nlGvfiC~~CSgiH 68 (147)
T 3dwd_A 36 DENN-VCFECGAFNPQWVSVTYGIWICLECSGRH 68 (147)
T ss_dssp TTTT-BCTTTCCBSCCEEETTTTEEECHHHHHHH
T ss_pred cCCC-ccCCCCCCCCCeEEecccEeEhHhhChHH
Confidence 3555 899999876544 5567999999998776
No 287
>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A
Probab=61.05 E-value=14 Score=30.34 Aligned_cols=30 Identities=13% Similarity=0.230 Sum_probs=27.1
Q ss_pred CC-CCCHHHHHHHhCCCH-HHHHHHHHHHHHh
Q psy6534 259 SD-KRSQKEIGDIAGVAE-VTIRQSYKLMYPH 288 (309)
Q Consensus 259 ~~-~~~~~~ia~~~~vs~-~ti~~~~kei~~~ 288 (309)
.. ++|+++||+.+|+++ .|+.+..++|.+.
T Consensus 166 ~~~~~t~~~lA~~lG~sr~etvsR~l~~l~~~ 197 (238)
T 2bgc_A 166 TLDNLTMQELGYSSGIAHSSAVSRIISKLKQE 197 (238)
T ss_dssp CCSCCCHHHHHHHTTCCCHHHHHHHHHHHHHT
T ss_pred EeccCCHHHHHHHhCCChHHHHHHHHHHHHHC
Confidence 46 789999999999999 7999999999765
No 288
>3hcj_A MSRB, peptide methionine sulfoxide reductase; methionine sulfoxide reductase B, oxidized form, oxidoreductase; 1.66A {Xanthomonas campestris PV} PDB: 3hci_A*
Probab=60.91 E-value=3.7 Score=32.16 Aligned_cols=32 Identities=28% Similarity=0.632 Sum_probs=26.8
Q ss_pred eCCCCceecCCCCccc--cCcccccCCCcccccC
Q psy6534 19 DYRAGDQICSECGLVV--GDRVIDVGSEWRTFSN 50 (309)
Q Consensus 19 D~~~G~~vC~~CG~V~--~e~~id~~~ewr~f~~ 50 (309)
....|.++|..||.-| .+.-+|.|.-|-+|.+
T Consensus 45 ~~~~G~Y~C~~Cg~pLF~S~~KFdSg~GWPSF~~ 78 (154)
T 3hcj_A 45 NKLDGVYTCRLCGLPLFRSNAKFDSGTGWPSFFA 78 (154)
T ss_dssp SCSSEEEEETTTCCEEEEECTTCCCCTTSSTTEE
T ss_pred CCCCEEEEccCCCCccccCcccccCCCCCccccc
Confidence 3578999999999877 5667889999999974
No 289
>2hku_A A putative transcriptional regulator; structural genomics, APC6040, TET rhodococcus SP. RHA1, PSI-2, protein structure initiative; HET: PG4; 2.00A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=60.77 E-value=15 Score=29.37 Aligned_cols=40 Identities=15% Similarity=0.086 Sum_probs=33.0
Q ss_pred hHHHHHHHHHHHHHhCCCCCCHHHHHHHhCCCHHHHHHHHH
Q psy6534 243 PISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283 (309)
Q Consensus 243 P~~iaaAaiyla~~~~~~~~~~~~ia~~~~vs~~ti~~~~k 283 (309)
-..|..|++-+.++.- ...|.++||+.+||+..||-..|.
T Consensus 22 r~~Il~aA~~lf~~~G-~~~s~~~IA~~aGvs~~tlY~~F~ 61 (215)
T 2hku_A 22 RDALFTAATELFLEHG-EGVPITQICAAAGAHPNQVTYYYG 61 (215)
T ss_dssp HHHHHHHHHHHHHHHC-TTSCHHHHHHHHTCCHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHhC-CCcCHHHHHHHhCCCHHHHHHHcC
Confidence 4556667777666766 889999999999999999988874
No 290
>2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis}
Probab=60.73 E-value=17 Score=26.40 Aligned_cols=28 Identities=4% Similarity=0.261 Sum_probs=26.2
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHH
Q psy6534 260 DKRSQKEIGDIAGVAEVTIRQSYKLMYP 287 (309)
Q Consensus 260 ~~~~~~~ia~~~~vs~~ti~~~~kei~~ 287 (309)
...++.++|+.+|++..|+.+..+.|.+
T Consensus 44 ~~~s~~ela~~l~is~stvsr~l~~Le~ 71 (119)
T 2lkp_A 44 GPLPVTDLAEAIGMEQSAVSHQLRVLRN 71 (119)
T ss_dssp CCCCHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 3689999999999999999999999988
No 291
>2a6c_A Helix-turn-helix motif; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: CIT; 1.90A {Nitrosomonas europaea} SCOP: a.35.1.13
Probab=60.58 E-value=22 Score=24.01 Aligned_cols=25 Identities=12% Similarity=0.251 Sum_probs=21.4
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHH
Q psy6534 259 SDKRSQKEIGDIAGVAEVTIRQSYK 283 (309)
Q Consensus 259 ~~~~~~~~ia~~~~vs~~ti~~~~k 283 (309)
...++++++|+.+|++..||.+..+
T Consensus 29 ~~glsq~elA~~~gis~~~is~~e~ 53 (83)
T 2a6c_A 29 NSGLTQFKAAELLGVTQPRVSDLMR 53 (83)
T ss_dssp TTTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 4568999999999999999987654
No 292
>3szt_A QCSR, quorum-sensing control repressor; quorum sensing acyl-homoserine lactone, helix-turn-helix, transcription factor, 3-OXO-C12 HSL; HET: OHN; 2.55A {Pseudomonas aeruginosa}
Probab=60.45 E-value=8.1 Score=32.33 Aligned_cols=30 Identities=17% Similarity=0.124 Sum_probs=26.5
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHhh
Q psy6534 260 DKRSQKEIGDIAGVAEVTIRQSYKLMYPHA 289 (309)
Q Consensus 260 ~~~~~~~ia~~~~vs~~ti~~~~kei~~~~ 289 (309)
...+.+|||+.+|+|+.|++...+.+++..
T Consensus 189 ~G~s~~eIa~~l~is~~tV~~~~~~~~~kl 218 (237)
T 3szt_A 189 VGKTYGEIGLILSIDQRTVKFHIVNAMRKL 218 (237)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHHHHHHHT
T ss_pred cCCCHHHHHHHHCCCHHHHHHHHHHHHHHh
Confidence 457899999999999999999999987763
No 293
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=60.44 E-value=26 Score=26.19 Aligned_cols=28 Identities=7% Similarity=0.127 Sum_probs=25.9
Q ss_pred CCHHHHHHHhCCCHHHHHHHHHHHHHhh
Q psy6534 262 RSQKEIGDIAGVAEVTIRQSYKLMYPHA 289 (309)
Q Consensus 262 ~~~~~ia~~~~vs~~ti~~~~kei~~~~ 289 (309)
.++.+||+.+|+++.|+.++.+.|.+.-
T Consensus 52 ps~~~LA~~l~~s~~~V~~~l~~Le~kG 79 (128)
T 2vn2_A 52 PTPAELAERMTVSAAECMEMVRRLLQKG 79 (128)
T ss_dssp CCHHHHHHTSSSCHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence 7999999999999999999999998763
No 294
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=60.40 E-value=12 Score=28.34 Aligned_cols=31 Identities=10% Similarity=0.117 Sum_probs=27.7
Q ss_pred CCCCCCHHHHHHHhCCCHHHHHHHHHHHHHh
Q psy6534 258 SSDKRSQKEIGDIAGVAEVTIRQSYKLMYPH 288 (309)
Q Consensus 258 ~~~~~~~~~ia~~~~vs~~ti~~~~kei~~~ 288 (309)
.+.++++.+||+.++++.+|+.+..+.|.+.
T Consensus 51 ~~~~~t~~eLa~~l~i~~~tvs~~l~~Le~~ 81 (150)
T 3fm5_A 51 QAEGVNQRGVAATMGLDPSQIVGLVDELEER 81 (150)
T ss_dssp STTCCCSHHHHHHHTCCHHHHHHHHHHHHTT
T ss_pred CCCCcCHHHHHHHHCCCHhHHHHHHHHHHHC
Confidence 4556899999999999999999999999865
No 295
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=60.29 E-value=14 Score=27.70 Aligned_cols=27 Identities=11% Similarity=0.222 Sum_probs=25.7
Q ss_pred CCHHHHHHHhCCCHHHHHHHHHHHHHh
Q psy6534 262 RSQKEIGDIAGVAEVTIRQSYKLMYPH 288 (309)
Q Consensus 262 ~~~~~ia~~~~vs~~ti~~~~kei~~~ 288 (309)
+++.+||+.+|++.+|+.+..+.|.+.
T Consensus 52 ~t~~eLa~~l~~s~~tvs~~l~~L~~~ 78 (146)
T 3tgn_A 52 LTNSELARRLNVSQAAVTKAIKSLVKE 78 (146)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 999999999999999999999999875
No 296
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=60.26 E-value=24 Score=25.98 Aligned_cols=28 Identities=14% Similarity=0.267 Sum_probs=26.5
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHHh
Q psy6534 261 KRSQKEIGDIAGVAEVTIRQSYKLMYPH 288 (309)
Q Consensus 261 ~~~~~~ia~~~~vs~~ti~~~~kei~~~ 288 (309)
++++.+||+.+|++.+|+.+..+.|.+.
T Consensus 52 ~~t~~ela~~l~~~~~tvs~~l~~L~~~ 79 (140)
T 2nnn_A 52 PCPQNQLGRLTAMDAATIKGVVERLDKR 79 (140)
T ss_dssp SBCHHHHHHHTTCCHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 7999999999999999999999999875
No 297
>1ovx_A ATP-dependent CLP protease ATP-binding subunit CL; treble CLEF zinc finger, homodimer, metal binding protein; NMR {Escherichia coli} SCOP: g.39.1.11
Probab=60.02 E-value=3.1 Score=27.80 Aligned_cols=25 Identities=28% Similarity=0.473 Sum_probs=17.7
Q ss_pred cccCCCCCCCC-----eeeeCCCCceecCCCC
Q psy6534 5 KVCCYEHPDAP-----LIEDYRAGDQICSECG 31 (309)
Q Consensus 5 ~~~Cp~C~~~~-----~v~D~~~G~~vC~~CG 31 (309)
...|..||.+. +|.- .|..+|.+|=
T Consensus 18 ~~~CSFCGK~e~eV~~LIaG--pgvyICdeCI 47 (67)
T 1ovx_A 18 LLYCSFCGKSQHEVRKLIAG--PSVYICDECV 47 (67)
T ss_dssp CCCCTTTCCCTTTSSSEEEC--SSCEEEHHHH
T ss_pred CcEecCCCCCHHHHcccCCC--CCCChhHHHH
Confidence 46899998653 4443 3789999983
No 298
>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}
Probab=59.90 E-value=9.3 Score=28.20 Aligned_cols=29 Identities=21% Similarity=0.328 Sum_probs=26.9
Q ss_pred CCCHHHHHHHh--CCCHHHHHHHHHHHHHhh
Q psy6534 261 KRSQKEIGDIA--GVAEVTIRQSYKLMYPHA 289 (309)
Q Consensus 261 ~~~~~~ia~~~--~vs~~ti~~~~kei~~~~ 289 (309)
+.+..+||+.+ |+|..+++++.+.|.+.-
T Consensus 27 ~~s~~eLA~~l~~giS~~aVs~rL~~Le~~G 57 (111)
T 3b73_A 27 NGSPKELEDRDEIRISKSSVSRRLKKLADHD 57 (111)
T ss_dssp CBCHHHHHTSTTCCSCHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHhcCCCHHHHHHHHHHHHHCC
Confidence 79999999999 999999999999998763
No 299
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=59.89 E-value=15 Score=27.23 Aligned_cols=38 Identities=11% Similarity=0.058 Sum_probs=30.1
Q ss_pred HHHHHHhcCCC-ccHHHHHHHhcccHHHHHHHHHHHHHH
Q psy6534 157 LYIACRQEGVP-RTFKEICAVSKISKKEIGRCFKLILKA 194 (309)
Q Consensus 157 ly~acR~~~~~-~tl~eia~~~~~~~~~i~~~~~~l~~~ 194 (309)
+|.+...++-| .|..||++.++++...+.+.+..|.+.
T Consensus 31 il~~L~~~~~~~~t~~eLa~~l~~s~sTV~r~L~~L~~~ 69 (123)
T 3r0a_A 31 VMKSFLNEPDRWIDTDALSKSLKLDVSTVQRSVKKLHEK 69 (123)
T ss_dssp HHHHHHHSTTCCEEHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 34444456667 999999999999999999988888763
No 300
>4a0z_A Transcription factor FAPR; lipid homeostasis; HET: MLC; 1.90A {Staphylococcus aureus} PDB: 4a0y_A 4a0x_A* 4a12_A
Probab=59.85 E-value=7.9 Score=31.49 Aligned_cols=28 Identities=21% Similarity=0.223 Sum_probs=24.9
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHHH
Q psy6534 259 SDKRSQKEIGDIAGVAEVTIRQSYKLMY 286 (309)
Q Consensus 259 ~~~~~~~~ia~~~~vs~~ti~~~~kei~ 286 (309)
+-.++..|+|+.++||+.|||+-..||.
T Consensus 24 ~~~~~~~~la~~~~vs~~TiRrDl~eL~ 51 (190)
T 4a0z_A 24 NPFITDHELSDLFQVSIQTIRLDRTYLN 51 (190)
T ss_dssp CTTCCHHHHHHHHTSCHHHHHHHHHHHT
T ss_pred CCCEeHHHHHHHHCCCHHHHHHHHHHhc
Confidence 3458999999999999999999998875
No 301
>2lnb_A Z-DNA-binding protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, immune system; NMR {Homo sapiens}
Probab=59.74 E-value=10 Score=26.01 Aligned_cols=45 Identities=7% Similarity=-0.024 Sum_probs=35.4
Q ss_pred HHHHHHhCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHhhcccCCC
Q psy6534 251 IYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKLFPQ 295 (309)
Q Consensus 251 iyla~~~~~~~~~~~~ia~~~~vs~~ti~~~~kei~~~~~~l~~~ 295 (309)
|+=+.+-.|.++...+||+.+||....+.+++++|.+.-.-.+|.
T Consensus 24 VLe~LkeaG~PlkageIae~~GvdKKeVdKaik~LKkEgkI~SPk 68 (80)
T 2lnb_A 24 ILQVLTEAGSPVKLAQLVKECQAPKRELNQVLYRMKKELKVSLTS 68 (80)
T ss_dssp HHHHHHHHTSCEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHcCCCCCHHHHHHHHCCCHHHHHHHHHHHHHcCCccCCC
Confidence 333445557789999999999999999999999998776544443
No 302
>2hs5_A Putative transcriptional regulator GNTR; APC6050, rhodococcus SP. RH structural genomics, PSI-2, protein structure initiative; 2.20A {Rhodococcus SP} SCOP: a.4.5.6 a.78.1.1
Probab=59.73 E-value=7.3 Score=32.69 Aligned_cols=30 Identities=17% Similarity=0.375 Sum_probs=27.2
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHHHHh
Q psy6534 259 SDKRSQKEIGDIAGVAEVTIRQSYKLMYPH 288 (309)
Q Consensus 259 ~~~~~~~~ia~~~~vs~~ti~~~~kei~~~ 288 (309)
|.+++..++|+.+|||..+||.+++.|...
T Consensus 49 G~~L~e~~La~~lgVSRtpVREAL~~L~~e 78 (239)
T 2hs5_A 49 GARLSEPDICAALDVSRNTVREAFQILIED 78 (239)
T ss_dssp TCEECHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred cCEeCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 567899999999999999999999999764
No 303
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=59.72 E-value=22 Score=24.73 Aligned_cols=30 Identities=7% Similarity=-0.082 Sum_probs=26.8
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHHHHh
Q psy6534 259 SDKRSQKEIGDIAGVAEVTIRQSYKLMYPH 288 (309)
Q Consensus 259 ~~~~~~~~ia~~~~vs~~ti~~~~kei~~~ 288 (309)
+..+++.+||+.++++.+|+.+..+.|.+.
T Consensus 28 ~~~~t~~eLa~~l~i~~~tvs~~l~~Le~~ 57 (95)
T 2qvo_A 28 GNDVYIQYIASKVNSPHSYVWLIIKKFEEA 57 (95)
T ss_dssp TCCEEHHHHHHHSSSCHHHHHHHHHHHHHT
T ss_pred CCCcCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 345899999999999999999999999765
No 304
>3b7h_A Prophage LP1 protein 11; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomics; 2.00A {Lactobacillus plantarum WCFS1}
Probab=59.67 E-value=7.4 Score=25.75 Aligned_cols=23 Identities=13% Similarity=0.397 Sum_probs=19.9
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHH
Q psy6534 260 DKRSQKEIGDIAGVAEVTIRQSY 282 (309)
Q Consensus 260 ~~~~~~~ia~~~~vs~~ti~~~~ 282 (309)
..+++.++|+.+|++..||.+..
T Consensus 19 ~g~sq~~lA~~~gis~~~i~~~e 41 (78)
T 3b7h_A 19 QNLTINRVATLAGLNQSTVNAMF 41 (78)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHH
Confidence 45899999999999999997754
No 305
>1xd7_A YWNA; structural genomics, protein structure initiative, winged HE binding, hypothetical protein, PSI; 2.30A {Bacillus subtilis subsp} SCOP: a.4.5.55
Probab=59.60 E-value=19 Score=27.55 Aligned_cols=43 Identities=19% Similarity=0.269 Sum_probs=32.5
Q ss_pred HHHHHHHH-HHHHHhCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHhh
Q psy6534 244 ISVAAAAI-YMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHA 289 (309)
Q Consensus 244 ~~iaaAai-yla~~~~~~~~~~~~ia~~~~vs~~ti~~~~kei~~~~ 289 (309)
..+|.-++ |+| +..+ + +.++||+..++++..+++....|.+.-
T Consensus 8 ~~yAl~~L~~La-~~~~-~-s~~~IA~~~~i~~~~l~kIl~~L~~aG 51 (145)
T 1xd7_A 8 LAVAIHILSLIS-MDEK-T-SSEIIADSVNTNPVVVRRMISLLKKAD 51 (145)
T ss_dssp HHHHHHHHHHHH-TCSC-C-CHHHHHHHHTSCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHH-hCCC-C-CHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence 33444444 555 3344 5 999999999999999999999998753
No 306
>3hrs_A Metalloregulator SCAR; DTXR/MNTR family member, transcription; 2.70A {Streptococcus gordonii} PDB: 3hrt_A 3hru_A
Probab=59.57 E-value=9.8 Score=31.39 Aligned_cols=30 Identities=20% Similarity=0.320 Sum_probs=27.5
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHHHHh
Q psy6534 259 SDKRSQKEIGDIAGVAEVTIRQSYKLMYPH 288 (309)
Q Consensus 259 ~~~~~~~~ia~~~~vs~~ti~~~~kei~~~ 288 (309)
+..+++.+||+.++++..|+.+..+.|.+.
T Consensus 18 ~~~~~~~~lA~~l~vs~~tvs~~l~~Le~~ 47 (214)
T 3hrs_A 18 HNKITNKEIAQLMQVSPPAVTEMMKKLLAE 47 (214)
T ss_dssp CSCCCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCCcCHHHHHHHHCCChhHHHHHHHHHHHC
Confidence 457899999999999999999999999875
No 307
>3qq6_A HTH-type transcriptional regulator SINR; helix-turn-helix motif, biofilm, repressor, SINI; 1.90A {Bacillus subtilis}
Probab=59.21 E-value=7.6 Score=26.15 Aligned_cols=25 Identities=24% Similarity=0.227 Sum_probs=21.0
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q psy6534 260 DKRSQKEIGDIAGVAEVTIRQSYKL 284 (309)
Q Consensus 260 ~~~~~~~ia~~~~vs~~ti~~~~ke 284 (309)
..++++++|+.+||+..+|.+.-+-
T Consensus 22 ~gltq~elA~~~gis~~~is~~E~G 46 (78)
T 3qq6_A 22 KGYSLSELAEKAGVAKSYLSSIERN 46 (78)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 3589999999999999999876543
No 308
>2q0o_A Probable transcriptional activator protein TRAR; helix-turn-helix, two-helix coiled coil; HET: LAE; 2.00A {Rhizobium SP}
Probab=59.12 E-value=9 Score=31.92 Aligned_cols=30 Identities=7% Similarity=0.185 Sum_probs=26.3
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHhh
Q psy6534 260 DKRSQKEIGDIAGVAEVTIRQSYKLMYPHA 289 (309)
Q Consensus 260 ~~~~~~~ia~~~~vs~~ti~~~~kei~~~~ 289 (309)
...+.+|||+.+|+|+.|++...+.+++..
T Consensus 189 ~g~s~~eIa~~l~is~~tV~~~~~~~~~kl 218 (236)
T 2q0o_A 189 KGKTASVTANLTGINARTVQHYLDKARAKL 218 (236)
T ss_dssp TTCCHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHHHHHHHh
Confidence 457899999999999999999998887654
No 309
>2b5a_A C.BCLI; helix-turn-helix motif, gene regulation; 1.54A {Bacillus caldolyticus} SCOP: a.35.1.3
Probab=59.07 E-value=7.7 Score=25.58 Aligned_cols=23 Identities=30% Similarity=0.410 Sum_probs=20.0
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHH
Q psy6534 260 DKRSQKEIGDIAGVAEVTIRQSY 282 (309)
Q Consensus 260 ~~~~~~~ia~~~~vs~~ti~~~~ 282 (309)
..+++.++|+.+|++..||.+..
T Consensus 22 ~glsq~~lA~~~gis~~~i~~~e 44 (77)
T 2b5a_A 22 KGVSQEELADLAGLHRTYISEVE 44 (77)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHH
T ss_pred cCCCHHHHHHHHCCCHHHHHHHH
Confidence 45899999999999999998754
No 310
>1adr_A P22 C2 repressor; transcription regulation; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=58.61 E-value=7.8 Score=25.43 Aligned_cols=23 Identities=35% Similarity=0.502 Sum_probs=19.7
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHH
Q psy6534 261 KRSQKEIGDIAGVAEVTIRQSYK 283 (309)
Q Consensus 261 ~~~~~~ia~~~~vs~~ti~~~~k 283 (309)
.+++.++|+.+|++..||.+..+
T Consensus 18 gls~~~lA~~~gis~~~i~~~e~ 40 (76)
T 1adr_A 18 KIRQAALGKMVGVSNVAISQWER 40 (76)
T ss_dssp TCCHHHHHHHHTSCHHHHHHHHT
T ss_pred CCCHHHHHHHHCcCHHHHHHHHc
Confidence 57999999999999999987543
No 311
>1y7y_A C.AHDI; helix-turn-helix, DNA-binding protein, transcriptional regulator, transcription regulator; 1.69A {Aeromonas hydrophila} SCOP: a.35.1.3
Probab=58.58 E-value=8.1 Score=25.20 Aligned_cols=23 Identities=13% Similarity=0.131 Sum_probs=19.9
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHH
Q psy6534 260 DKRSQKEIGDIAGVAEVTIRQSY 282 (309)
Q Consensus 260 ~~~~~~~ia~~~~vs~~ti~~~~ 282 (309)
..+++.++|+.+|++..+|.+..
T Consensus 25 ~g~s~~~lA~~~gis~~~i~~~e 47 (74)
T 1y7y_A 25 KGLSQETLAFLSGLDRSYVGGVE 47 (74)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHH
Confidence 45899999999999999997754
No 312
>3dfx_A Trans-acting T-cell-specific transcription factor GATA-3; activator, DNA-binding, metal-binding, nucleus; HET: DNA; 2.70A {Mus musculus} PDB: 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A*
Probab=58.31 E-value=1.8 Score=28.69 Aligned_cols=29 Identities=28% Similarity=0.644 Sum_probs=15.4
Q ss_pred ccCCCCCCCC--eeeeCCCCceecCCCCccc
Q psy6534 6 VCCYEHPDAP--LIEDYRAGDQICSECGLVV 34 (309)
Q Consensus 6 ~~Cp~C~~~~--~v~D~~~G~~vC~~CG~V~ 34 (309)
..|-+|+.+. +-..-..|.++|..||+-.
T Consensus 8 ~~C~~C~tt~Tp~WR~gp~G~~LCNACGl~~ 38 (63)
T 3dfx_A 8 TSCANCQTTTTTLWRRNANGDPVCNACGLYY 38 (63)
T ss_dssp CCCTTTCCSCCSSCCCCTTSCCCCHHHHHHH
T ss_pred CcCCCcCCCCCCccCCCCCCCchhhHHHHHH
Confidence 3566666442 2122334666677777654
No 313
>2kpj_A SOS-response transcriptional repressor, LEXA; NESG, GFT, structural genomics, PSI-2, protein structure initiative; NMR {Eubacterium rectale atcc 33656}
Probab=58.24 E-value=12 Score=25.96 Aligned_cols=24 Identities=25% Similarity=0.303 Sum_probs=19.6
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHH
Q psy6534 259 SDKRSQKEIGDIAGVAEVTIRQSY 282 (309)
Q Consensus 259 ~~~~~~~~ia~~~~vs~~ti~~~~ 282 (309)
...++++++|+.+|++..||.+..
T Consensus 20 ~~glsq~~lA~~~gis~~~is~~e 43 (94)
T 2kpj_A 20 KSEKTQLEIAKSIGVSPQTFNTWC 43 (94)
T ss_dssp TSSSCHHHHHHHHTCCHHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHH
Confidence 456899999999999999987653
No 314
>1vk6_A NADH pyrophosphatase; 1790429, structural genomics, JCSG, PS protein structure initiative, joint center for structural G hydrolase; HET: MSE; 2.20A {Escherichia coli} SCOP: d.113.1.4 d.113.1.4 g.41.14.1 PDB: 2gb5_A
Probab=58.17 E-value=5.9 Score=34.16 Aligned_cols=29 Identities=14% Similarity=0.062 Sum_probs=21.0
Q ss_pred ccCCCCCCCCeeeeCCCCceecCCCCcccc
Q psy6534 6 VCCYEHPDAPLIEDYRAGDQICSECGLVVG 35 (309)
Q Consensus 6 ~~Cp~C~~~~~v~D~~~G~~vC~~CG~V~~ 35 (309)
..||.||+..... ...-..+|.+||.+.-
T Consensus 108 ~fC~~CG~~~~~~-~~~~~~~C~~C~~~~y 136 (269)
T 1vk6_A 108 KYCGYCGHEMYPS-KTEWAMLCSHCRERYY 136 (269)
T ss_dssp SBCTTTCCBEEEC-SSSSCEEESSSSCEEC
T ss_pred CccccCCCcCccC-CCceeeeCCCCCCEec
Confidence 4799999864433 3445889999998753
No 315
>2p57_A GTPase-activating protein ZNF289; zinc finger, GAP, structural genomics, structural genomics consortium, SGC, metal binding protein; 1.80A {Homo sapiens}
Probab=57.95 E-value=2 Score=33.42 Aligned_cols=31 Identities=23% Similarity=0.387 Sum_probs=22.9
Q ss_pred CCcccCCCCCCCCeee-eCCCCceecCCCCccc
Q psy6534 3 INKVCCYEHPDAPLIE-DYRAGDQICSECGLVV 34 (309)
Q Consensus 3 ~~~~~Cp~C~~~~~v~-D~~~G~~vC~~CG~V~ 34 (309)
+|. .|-+||..+..+ ...-|..+|.+|.-|.
T Consensus 36 ~N~-~CaDCga~~P~WaS~n~GvfiC~~CsgiH 67 (144)
T 2p57_A 36 TNK-ACFDCGAKNPSWASITYGVFLCIDCSGVH 67 (144)
T ss_dssp GGG-BCTTTCCBSCCEEEGGGTEEECHHHHHHH
T ss_pred CCC-cCCCCcCCCCCeEEeccCEEEhhhchHHH
Confidence 344 899998876544 4567999999997776
No 316
>3bs3_A Putative DNA-binding protein; XRE-family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.65A {Bacteroides fragilis}
Probab=57.87 E-value=8.4 Score=25.32 Aligned_cols=24 Identities=21% Similarity=0.310 Sum_probs=20.3
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHH
Q psy6534 260 DKRSQKEIGDIAGVAEVTIRQSYK 283 (309)
Q Consensus 260 ~~~~~~~ia~~~~vs~~ti~~~~k 283 (309)
..+++.++|+.+|++..||.+..+
T Consensus 22 ~g~s~~~lA~~~gis~~~i~~~e~ 45 (76)
T 3bs3_A 22 KQRTNRWLAEQMGKSENTISRWCS 45 (76)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHc
Confidence 357999999999999999977543
No 317
>2f2e_A PA1607; transcription factor, helix-TRUN-helix, APC5613, structural genomics, PSI, protein structure initiative; HET: GLC; 1.85A {Pseudomonas aeruginosa} SCOP: a.4.5.69
Probab=57.75 E-value=16 Score=27.98 Aligned_cols=30 Identities=13% Similarity=0.151 Sum_probs=27.3
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHhh
Q psy6534 260 DKRSQKEIGDIAGVAEVTIRQSYKLMYPHA 289 (309)
Q Consensus 260 ~~~~~~~ia~~~~vs~~ti~~~~kei~~~~ 289 (309)
-+.++.||++.+|++..|+.++.+.|.+.-
T Consensus 36 g~~~~~eLa~~lgis~~tls~~L~~Le~~G 65 (146)
T 2f2e_A 36 GLTRFGEFQKSLGLAKNILAARLRNLVEHG 65 (146)
T ss_dssp TCCSHHHHHHHHCCCHHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHCC
Confidence 468999999999999999999999998763
No 318
>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A
Probab=57.61 E-value=22 Score=26.27 Aligned_cols=29 Identities=10% Similarity=0.228 Sum_probs=26.7
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHh
Q psy6534 260 DKRSQKEIGDIAGVAEVTIRQSYKLMYPH 288 (309)
Q Consensus 260 ~~~~~~~ia~~~~vs~~ti~~~~kei~~~ 288 (309)
-+.+..++|+.+|++.+|+.+..+.|.+.
T Consensus 58 ~~~s~~ela~~lgis~stvs~~L~~Le~~ 86 (122)
T 1r1t_A 58 SELCVGDLAQAIGVSESAVSHQLRSLRNL 86 (122)
T ss_dssp CCBCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 46899999999999999999999999883
No 319
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=57.61 E-value=18 Score=26.97 Aligned_cols=31 Identities=19% Similarity=0.279 Sum_probs=28.0
Q ss_pred CCCCCCHHHHHHHhCCCHHHHHHHHHHHHHh
Q psy6534 258 SSDKRSQKEIGDIAGVAEVTIRQSYKLMYPH 288 (309)
Q Consensus 258 ~~~~~~~~~ia~~~~vs~~ti~~~~kei~~~ 288 (309)
.+.++++.+||+.+|++.+|+.+..+.|.+.
T Consensus 49 ~~~~~t~~~la~~l~~s~~~vs~~l~~L~~~ 79 (146)
T 2fbh_A 49 HRDSPTQRELAQSVGVEGPTLARLLDGLESQ 79 (146)
T ss_dssp CSSCCBHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred cCCCCCHHHHHHHhCCChhhHHHHHHHHHHC
Confidence 4567999999999999999999999999875
No 320
>3df8_A Possible HXLR family transcriptional factor; APC89000, structural genomics, midwest center for structural genomics, MCSG; 1.65A {Thermoplasma volcanium} SCOP: a.4.5.0
Probab=57.41 E-value=17 Score=26.36 Aligned_cols=30 Identities=10% Similarity=0.181 Sum_probs=26.2
Q ss_pred CCCC--HHHHHHHh-CCCHHHHHHHHHHHHHhh
Q psy6534 260 DKRS--QKEIGDIA-GVAEVTIRQSYKLMYPHA 289 (309)
Q Consensus 260 ~~~~--~~~ia~~~-~vs~~ti~~~~kei~~~~ 289 (309)
-+.+ ..|+++.+ |++..|+.+..++|.+.-
T Consensus 39 g~~~~~~~eL~~~l~gis~~~ls~~L~~Le~~G 71 (111)
T 3df8_A 39 GSTRQNFNDIRSSIPGISSTILSRRIKDLIDSG 71 (111)
T ss_dssp SSSCBCHHHHHHTSTTCCHHHHHHHHHHHHHTT
T ss_pred CCCCCCHHHHHHHccCCCHHHHHHHHHHHHHCC
Confidence 3455 99999999 999999999999998763
No 321
>2l1p_A DNA-binding protein SATB1; PSI-biology, NESG, structural genomics, protein structure in northeast structural genomics consortium; NMR {Homo sapiens} PDB: 3nzl_A*
Probab=57.20 E-value=8.5 Score=26.73 Aligned_cols=22 Identities=9% Similarity=0.105 Sum_probs=19.8
Q ss_pred CCCHHHHHHHhCCCHHHHHHHH
Q psy6534 261 KRSQKEIGDIAGVAEVTIRQSY 282 (309)
Q Consensus 261 ~~~~~~ia~~~~vs~~ti~~~~ 282 (309)
.++|+++|+.+||+.+||...-
T Consensus 32 GikQ~eLAK~iGIsqsTLSaIe 53 (83)
T 2l1p_A 32 DMNQSSLAKECPLSQSMISSIV 53 (83)
T ss_dssp TSCHHHHHHHSSSCHHHHHHHH
T ss_pred hcCHHHHHHHcCCCHHHHHHHH
Confidence 7899999999999999998653
No 322
>4ghj_A Probable transcriptional regulator; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE; 1.75A {Vibrio vulnificus}
Probab=57.14 E-value=8.1 Score=27.91 Aligned_cols=22 Identities=32% Similarity=0.525 Sum_probs=19.7
Q ss_pred CCCCHHHHHHHhCCCHHHHHHH
Q psy6534 260 DKRSQKEIGDIAGVAEVTIRQS 281 (309)
Q Consensus 260 ~~~~~~~ia~~~~vs~~ti~~~ 281 (309)
..+||+++|+.+||+..||.+.
T Consensus 48 ~glTQ~eLA~~~gvs~~~is~~ 69 (101)
T 4ghj_A 48 RDLTQSEVAEIAGIARKTVLNA 69 (101)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHH
T ss_pred cCCCHHHHHHHcCCCHHHHHHH
Confidence 4689999999999999999864
No 323
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=57.12 E-value=13 Score=24.17 Aligned_cols=33 Identities=15% Similarity=0.200 Sum_probs=28.2
Q ss_pred CCccHHHHHHHhcccHHHHHHHHHHHHHHhccc
Q psy6534 166 VPRTFKEICAVSKISKKEIGRCFKLILKALETS 198 (309)
Q Consensus 166 ~~~tl~eia~~~~~~~~~i~~~~~~l~~~l~~~ 198 (309)
-..|.+|||+.++++...+.....+..+.|...
T Consensus 24 ~g~s~~eIA~~lgis~~tV~~~~~ra~~kLr~~ 56 (68)
T 2p7v_B 24 TDYTLEEVGKQFDVTRERIRQIEAKALRKLRHP 56 (68)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHHHHHHGGGSC
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHH
Confidence 368999999999999999998888888877643
No 324
>2iqj_A Stromal membrane-associated protein 1-like; zinc, structural genomics, structural genomics consortium, SGC, protein transport; 1.90A {Homo sapiens}
Probab=57.11 E-value=2.5 Score=32.52 Aligned_cols=31 Identities=23% Similarity=0.328 Sum_probs=23.2
Q ss_pred CCcccCCCCCCCCeee-eCCCCceecCCCCccc
Q psy6534 3 INKVCCYEHPDAPLIE-DYRAGDQICSECGLVV 34 (309)
Q Consensus 3 ~~~~~Cp~C~~~~~v~-D~~~G~~vC~~CG~V~ 34 (309)
+|. .|-+||..+..+ ...-|..+|.+|.-|.
T Consensus 26 ~N~-~CaDCg~~~P~WaS~n~GvfiC~~CsgiH 57 (134)
T 2iqj_A 26 DNK-FCADCQSKGPRWASWNIGVFICIRCAGIH 57 (134)
T ss_dssp GGG-BCTTTCCBSCCEEETTTTEEECHHHHHHH
T ss_pred CCC-cCCcCcCCCCCeEEecCCEEEhHhhhHHH
Confidence 344 799998876543 4567999999998776
No 325
>3s8q_A R-M controller protein; protein-DNA complex, helix-turn-helix; HET: DNA; 2.10A {Enterobacter SP} SCOP: a.35.1.0 PDB: 3clc_A* 3ufd_A*
Probab=57.04 E-value=8.6 Score=25.87 Aligned_cols=23 Identities=9% Similarity=0.060 Sum_probs=20.0
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHH
Q psy6534 260 DKRSQKEIGDIAGVAEVTIRQSY 282 (309)
Q Consensus 260 ~~~~~~~ia~~~~vs~~ti~~~~ 282 (309)
..+|++++|+.+|++..||.+.-
T Consensus 23 ~glsq~~lA~~~gis~~~i~~~e 45 (82)
T 3s8q_A 23 KGMTQEDLAYKSNLDRTYISGIE 45 (82)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHH
T ss_pred cCCCHHHHHHHhCcCHHHHHHHH
Confidence 45899999999999999998754
No 326
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=56.90 E-value=33 Score=23.24 Aligned_cols=32 Identities=19% Similarity=0.144 Sum_probs=27.8
Q ss_pred CccHHHHHHHhcccHHHHHHHHHHHHHHhccc
Q psy6534 167 PRTFKEICAVSKISKKEIGRCFKLILKALETS 198 (309)
Q Consensus 167 ~~tl~eia~~~~~~~~~i~~~~~~l~~~l~~~ 198 (309)
..+.+|||+.++++...+.....++.+.|+..
T Consensus 36 g~s~~eIA~~l~is~~tV~~~l~r~~~kL~~~ 67 (82)
T 1je8_A 36 GLPNKMIARRLDITESTVKVHVKHMLKKMKLK 67 (82)
T ss_dssp TCCHHHHHHHHTSCHHHHHHHHHHHHHHTTCS
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHHHHcCC
Confidence 36889999999999999998888888888753
No 327
>3bqz_B HTH-type transcriptional regulator QACR; multidrug resistance, TETR, malachite green, DNA- binding, plasmid, repressor; HET: MGR; 2.17A {Staphylococcus aureus} PDB: 3br1_B* 3br3_B* 3pm1_B* 1rkw_B* 1jt0_A* 1jty_B* 1jum_B* 1jup_B* 1jtx_B* 1jus_B* 2dtz_B 2gby_B* 2hq5_B 3br2_B* 3br5_B* 1qvt_B* 1qvu_B* 3br0_B* 3br6_B* 1jt6_B* ...
Probab=56.86 E-value=13 Score=28.79 Aligned_cols=38 Identities=11% Similarity=0.143 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHhCC-CCCCHHHHHHHhCCCHHHHHHHHHH
Q psy6534 246 VAAAAIYMASQASS-DKRSQKEIGDIAGVAEVTIRQSYKL 284 (309)
Q Consensus 246 iaaAaiyla~~~~~-~~~~~~~ia~~~~vs~~ti~~~~ke 284 (309)
|..|++-+..+ .| ..+|.++||+.+|||..|+-+.|+.
T Consensus 7 Il~aa~~l~~~-~G~~~~ti~~Ia~~agvs~~t~Y~~F~s 45 (194)
T 3bqz_B 7 ILGVAKELFIK-NGYNATTTGEIVKLSESSKGNLYYHFKT 45 (194)
T ss_dssp HHHHHHHHHHH-HTTTTCCHHHHHHHTTCCHHHHHHHTSS
T ss_pred HHHHHHHHHHH-cCCccCCHHHHHHHhCCCchhHHHhCCC
Confidence 44444444444 35 4699999999999999999887743
No 328
>1xd7_A YWNA; structural genomics, protein structure initiative, winged HE binding, hypothetical protein, PSI; 2.30A {Bacillus subtilis subsp} SCOP: a.4.5.55
Probab=56.83 E-value=15 Score=28.07 Aligned_cols=43 Identities=16% Similarity=0.085 Sum_probs=33.8
Q ss_pred hhHHHHHHHHHHHHhcCCCccHHHHHHHhcccHHHHHHHHHHHHHH
Q psy6534 149 NDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGRCFKLILKA 194 (309)
Q Consensus 149 ~~~vaaAcly~acR~~~~~~tl~eia~~~~~~~~~i~~~~~~l~~~ 194 (309)
...-+-+.+|+|-+ .+ + +.++||+..+++..-+.+.+..|.+.
T Consensus 8 ~~yAl~~L~~La~~-~~-~-s~~~IA~~~~i~~~~l~kIl~~L~~a 50 (145)
T 1xd7_A 8 LAVAIHILSLISMD-EK-T-SSEIIADSVNTNPVVVRRMISLLKKA 50 (145)
T ss_dssp HHHHHHHHHHHHTC-SC-C-CHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhC-CC-C-CHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 44555677788754 34 5 99999999999999999999888763
No 329
>2owa_A Arfgap-like finger domain containing protein; zinc finger protein, cysteine-rich motif, GTPase activation; 2.00A {Cryptosporidium parvum iowa II}
Probab=56.77 E-value=2.5 Score=32.64 Aligned_cols=31 Identities=16% Similarity=0.268 Sum_probs=22.6
Q ss_pred CCcccCCCCCCCCeee-eCCCCceecCCCCccc
Q psy6534 3 INKVCCYEHPDAPLIE-DYRAGDQICSECGLVV 34 (309)
Q Consensus 3 ~~~~~Cp~C~~~~~v~-D~~~G~~vC~~CG~V~ 34 (309)
+|. .|-+||..+..+ ...-|..+|.+|.-|.
T Consensus 35 ~N~-~CaDCga~~P~WaS~n~GvfiC~~CsgiH 66 (138)
T 2owa_A 35 ENR-TCFDCESRNPTWLSLSFAVFICLNCSSDH 66 (138)
T ss_dssp GGG-BCTTTCCBSCCEEETTTTEEECHHHHHHH
T ss_pred CCC-cCCCCcCCCCCeEEecCCEEEhHhhhHHH
Confidence 344 788898776554 4567889999997776
No 330
>3qkx_A Uncharacterized HTH-type transcriptional regulato; structural genomics, joint center for structural genomics; HET: MSE; 2.35A {Haemophilus influenzae}
Probab=56.71 E-value=14 Score=28.36 Aligned_cols=39 Identities=21% Similarity=0.116 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHhCCC-CCCHHHHHHHhCCCHHHHHHHHHH
Q psy6534 245 SVAAAAIYMASQASSD-KRSQKEIGDIAGVAEVTIRQSYKL 284 (309)
Q Consensus 245 ~iaaAaiyla~~~~~~-~~~~~~ia~~~~vs~~ti~~~~ke 284 (309)
.|..|++-+-.+ .|. .+|.++||+.+|||..|+=+.|..
T Consensus 12 ~Il~aa~~l~~~-~G~~~~ti~~Ia~~agvs~~t~Y~~F~s 51 (188)
T 3qkx_A 12 QIFSATDRLMAR-EGLNQLSMLKLAKEANVAAGTIYLYFKN 51 (188)
T ss_dssp HHHHHHHHHHHH-SCSTTCCHHHHHHHHTCCHHHHHHHSSS
T ss_pred HHHHHHHHHHHh-cCcccCCHHHHHHHhCCCcchHHHHcCC
Confidence 344555544444 465 599999999999999999877643
No 331
>2riq_A Poly [ADP-ribose] polymerase 1; Zn-binding domain, Zn ribbon, Zn finger, ADP-ribosylation, D damage, DNA repair, DNA-binding, glycosyltransferase; 1.70A {Homo sapiens} PDB: 2jvn_A
Probab=56.69 E-value=5.7 Score=31.43 Aligned_cols=26 Identities=23% Similarity=0.281 Sum_probs=19.9
Q ss_pred CCcccCCCCCCCCeeeeCCCCceecCCCCcc
Q psy6534 3 INKVCCYEHPDAPLIEDYRAGDQICSECGLV 33 (309)
Q Consensus 3 ~~~~~Cp~C~~~~~v~D~~~G~~vC~~CG~V 33 (309)
|.-..||.|+ ..++++. |.++|+ |.+
T Consensus 76 Gal~~CP~C~-G~l~y~~--~~Y~C~--G~i 101 (160)
T 2riq_A 76 GALLPCEECS-GQLVFKS--DAYYCT--GDV 101 (160)
T ss_dssp CEECCCTTTC-CCEEEET--TEEEEC--CEE
T ss_pred CCCCCCCCCC-CEEEEeC--CeEEEC--CCC
Confidence 4456899999 5788874 999998 555
No 332
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=56.55 E-value=7.6 Score=27.11 Aligned_cols=29 Identities=7% Similarity=0.154 Sum_probs=26.7
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHh
Q psy6534 260 DKRSQKEIGDIAGVAEVTIRQSYKLMYPH 288 (309)
Q Consensus 260 ~~~~~~~ia~~~~vs~~ti~~~~kei~~~ 288 (309)
.+.+..+||+.+|++.+|+.+..+.|.+.
T Consensus 29 ~~~~~~ela~~l~is~~tvs~~l~~L~~~ 57 (100)
T 1ub9_A 29 RKAPFSQIQKVLDLTPGNLDSHIRVLERN 57 (100)
T ss_dssp SEEEHHHHHHHTTCCHHHHHHHHHHHHHT
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 36899999999999999999999999876
No 333
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=56.37 E-value=18 Score=26.91 Aligned_cols=30 Identities=10% Similarity=0.030 Sum_probs=27.6
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHHHHh
Q psy6534 259 SDKRSQKEIGDIAGVAEVTIRQSYKLMYPH 288 (309)
Q Consensus 259 ~~~~~~~~ia~~~~vs~~ti~~~~kei~~~ 288 (309)
+-++++.+||+.+|++.+|+.+..+.|.+.
T Consensus 48 ~~~~~~~ela~~l~~s~~tvs~~l~~Le~~ 77 (146)
T 2gxg_A 48 DGPKTMAYLANRYFVTQSAITASVDKLEEM 77 (146)
T ss_dssp TSCBCHHHHHHHTTCCHHHHHHHHHHHHHT
T ss_pred cCCcCHHHHHHHhCCCchhHHHHHHHHHHC
Confidence 457899999999999999999999999876
No 334
>2olm_A Nucleoporin-like protein RIP; arfgap, GTPase-activating protein, REV-interacting protein, human immunodeficiency virus, AIDS, structural genomics; 1.48A {Homo sapiens} PDB: 2d9l_A
Probab=56.27 E-value=2.9 Score=32.45 Aligned_cols=31 Identities=16% Similarity=0.462 Sum_probs=23.5
Q ss_pred CCcccCCCCCCCCeee-eCCCCceecCCCCccc
Q psy6534 3 INKVCCYEHPDAPLIE-DYRAGDQICSECGLVV 34 (309)
Q Consensus 3 ~~~~~Cp~C~~~~~v~-D~~~G~~vC~~CG~V~ 34 (309)
+|. .|-+||..+..+ ...-|..+|.+|.-|.
T Consensus 24 ~N~-~CaDCg~~~P~WaS~n~GvfiC~~CsgiH 55 (140)
T 2olm_A 24 HNR-KCFDCDQRGPTYVNMTVGSFVCTSCSGSL 55 (140)
T ss_dssp GGG-SCTTTCSSCCCEEETTTTEEECHHHHHHH
T ss_pred CCC-cCCCCCCCCCCceeeccCEEEchhccchh
Confidence 444 899999876554 4567999999998776
No 335
>3knw_A Putative transcriptional regulator (TETR/ACRR FAM; TETR-like protein, MCSG, PSI, structural genomics, protein S initiative; 2.45A {Acinetobacter SP}
Probab=56.25 E-value=15 Score=28.93 Aligned_cols=41 Identities=10% Similarity=0.086 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHhCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q psy6534 244 ISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKL 284 (309)
Q Consensus 244 ~~iaaAaiyla~~~~~~~~~~~~ia~~~~vs~~ti~~~~ke 284 (309)
..|..|++=+..+.--..+|.++||+.+|||..||-+.|+.
T Consensus 17 ~~Il~aa~~l~~~~G~~~~ti~~IA~~agvs~~t~Y~~F~s 57 (212)
T 3knw_A 17 QHILDSGFHLVLRKGFVGVGLQEILKTSGVPKGSFYHYFES 57 (212)
T ss_dssp HHHHHHHHHHHHHHCSTTCCHHHHHHHHTCCHHHHHHHCSS
T ss_pred HHHHHHHHHHHHHcCCccCCHHHHHHHhCCChHHHHHHCCC
Confidence 44555665555443224799999999999999999887743
No 336
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=56.14 E-value=15 Score=27.62 Aligned_cols=29 Identities=7% Similarity=0.056 Sum_probs=26.8
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHh
Q psy6534 260 DKRSQKEIGDIAGVAEVTIRQSYKLMYPH 288 (309)
Q Consensus 260 ~~~~~~~ia~~~~vs~~ti~~~~kei~~~ 288 (309)
-++++.+||+.+|++.+|+.+..+.|.+.
T Consensus 53 ~~~t~~ela~~l~~~~~~vs~~l~~Le~~ 81 (152)
T 3bj6_A 53 PGATAPQLGAALQMKRQYISRILQEVQRA 81 (152)
T ss_dssp TTEEHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 37899999999999999999999999876
No 337
>3f6w_A XRE-family like protein; helix-turn-helix, DNA binding protein, xenobiotic response E family of transcriptional regulators; HET: MSE BTB; 1.85A {Pseudomonas syringae PV}
Probab=56.13 E-value=8.9 Score=25.83 Aligned_cols=24 Identities=17% Similarity=0.196 Sum_probs=20.1
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHH
Q psy6534 260 DKRSQKEIGDIAGVAEVTIRQSYK 283 (309)
Q Consensus 260 ~~~~~~~ia~~~~vs~~ti~~~~k 283 (309)
..+|+.++|+.+|++..||.+.-+
T Consensus 26 ~gltq~elA~~~gis~~~is~~e~ 49 (83)
T 3f6w_A 26 AGITQKELAARLGRPQSFVSKTEN 49 (83)
T ss_dssp HTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHC
Confidence 358999999999999999877543
No 338
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=56.13 E-value=5.4 Score=35.19 Aligned_cols=29 Identities=24% Similarity=0.516 Sum_probs=19.3
Q ss_pred CcccCCCCCCCC---eeee--CCCC--ceecCCCCc
Q psy6534 4 NKVCCYEHPDAP---LIED--YRAG--DQICSECGL 32 (309)
Q Consensus 4 ~~~~Cp~C~~~~---~v~D--~~~G--~~vC~~CG~ 32 (309)
....||.||+.. ++.. ..+| -..|+-||+
T Consensus 181 ~~~~CPvCGs~P~~s~l~~~g~~~G~R~l~Cs~C~t 216 (309)
T 2fiy_A 181 SRTLCPACGSPPMAGMIRQGGKETGLRYLSCSLCAC 216 (309)
T ss_dssp TCSSCTTTCCCEEEEEEEC----CCEEEEEETTTCC
T ss_pred cCCCCCCCCCcCceeEEeecCCCCCcEEEEeCCCCC
Confidence 356899999875 3332 1356 589999984
No 339
>1zs4_A Regulatory protein CII; helix-turn-helix, transcription activator, transcription-DNA; HET: DNA; 1.70A {Enterobacteria phage lambda} SCOP: a.35.1.9
Probab=56.09 E-value=6.9 Score=27.32 Aligned_cols=23 Identities=13% Similarity=0.161 Sum_probs=19.2
Q ss_pred CCHHHHHHHhCCCHHHHHHHHHH
Q psy6534 262 RSQKEIGDIAGVAEVTIRQSYKL 284 (309)
Q Consensus 262 ~~~~~ia~~~~vs~~ti~~~~ke 284 (309)
.+|+.||+..||+++||.+--..
T Consensus 25 ~gQ~~vAe~~GvdeStISR~k~~ 47 (83)
T 1zs4_A 25 LGTEKTAEAVGVDKSQISRWKRD 47 (83)
T ss_dssp HCHHHHHHHHTSCHHHHHHHHHH
T ss_pred HhhHHHHHHhCCCHHHHhhhhhh
Confidence 57899999999999999874333
No 340
>2crw_A ARF GAP 3, ADP-ribosylation factor GTPase-activating protein 3; arfgap domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=56.00 E-value=3 Score=32.66 Aligned_cols=32 Identities=19% Similarity=0.315 Sum_probs=23.0
Q ss_pred CCCcccCCCCCCCCeee-eCCCCceecCCCCccc
Q psy6534 2 NINKVCCYEHPDAPLIE-DYRAGDQICSECGLVV 34 (309)
Q Consensus 2 ~~~~~~Cp~C~~~~~v~-D~~~G~~vC~~CG~V~ 34 (309)
++|. .|-+||..+..+ ...-|..+|.+|.-|.
T Consensus 27 p~N~-~CaDCga~~P~WaS~n~GvfiC~~CsgiH 59 (149)
T 2crw_A 27 PTNK-VCFDCGAKNPSWASITYGVFLCIDCSGSH 59 (149)
T ss_dssp TTTS-BCSSSCCBSCCCEETTTTEECCHHHHHHH
T ss_pred cCCC-cCCCCcCCCCCcEEeccCEEEchhcchhh
Confidence 3455 888898776543 4456889999997776
No 341
>2di3_A Bacterial regulatory proteins, GNTR family; helix-turn-helix, transcription; 2.05A {Corynebacterium glutamicum}
Probab=55.99 E-value=12 Score=31.21 Aligned_cols=30 Identities=17% Similarity=0.440 Sum_probs=26.4
Q ss_pred CCCC-CHHHHHHHhCCCHHHHHHHHHHHHHh
Q psy6534 259 SDKR-SQKEIGDIAGVAEVTIRQSYKLMYPH 288 (309)
Q Consensus 259 ~~~~-~~~~ia~~~~vs~~ti~~~~kei~~~ 288 (309)
|.++ +..++|+.+|||..+||.+++.|...
T Consensus 25 G~~LpsE~~La~~lgVSRtpVREAL~~L~~~ 55 (239)
T 2di3_A 25 GDHLPSERALSETLGVSRSSLREALRVLEAL 55 (239)
T ss_dssp TCBCCCHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred CCcCCCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 5678 47899999999999999999999755
No 342
>3k69_A Putative transcription regulator; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.95A {Lactobacillus plantarum} SCOP: a.4.5.0
Probab=55.82 E-value=11 Score=29.74 Aligned_cols=43 Identities=12% Similarity=0.196 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHhcCCCccHHHHHHHhcccHHHHHHHHHHHHHH
Q psy6534 151 AIASACLYIACRQEGVPRTFKEICAVSKISKKEIGRCFKLILKA 194 (309)
Q Consensus 151 ~vaaAcly~acR~~~~~~tl~eia~~~~~~~~~i~~~~~~l~~~ 194 (309)
.-+-+.+|+|.. .+-+.+..+||+..+++...+.+.+..|.+.
T Consensus 13 yAlr~l~~La~~-~~~~~s~~~IA~~~~is~~~l~kil~~L~~a 55 (162)
T 3k69_A 13 VAVHSILYLDAH-RDSKVASRELAQSLHLNPVMIRNILSVLHKH 55 (162)
T ss_dssp HHHHHHHHHHTT-TTSCBCHHHHHHHHTSCGGGTHHHHHHHHHT
T ss_pred HHHHHHHHHHhC-CCCCcCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 444466777754 3668999999999999999999999988774
No 343
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=55.69 E-value=61 Score=24.88 Aligned_cols=31 Identities=10% Similarity=0.218 Sum_probs=27.9
Q ss_pred CCCCCCHHHHHHHhCCCHHHHHHHHHHHHHh
Q psy6534 258 SSDKRSQKEIGDIAGVAEVTIRQSYKLMYPH 288 (309)
Q Consensus 258 ~~~~~~~~~ia~~~~vs~~ti~~~~kei~~~ 288 (309)
.+.++++.+||+.++++..|+.+..+.|.+.
T Consensus 65 ~~~~~t~~eLa~~l~i~~~tvs~~l~~Le~~ 95 (166)
T 3deu_A 65 LPPDQSQIQLAKAIGIEQPSLVRTLDQLEDK 95 (166)
T ss_dssp SCSSEEHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred cCCCCCHHHHHHHHCCCHhhHHHHHHHHHHC
Confidence 3556999999999999999999999999875
No 344
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=55.61 E-value=18 Score=23.76 Aligned_cols=31 Identities=19% Similarity=0.257 Sum_probs=26.3
Q ss_pred CCccHHHHHHHhcccHHHHHHHHHHHHHHhc
Q psy6534 166 VPRTFKEICAVSKISKKEIGRCFKLILKALE 196 (309)
Q Consensus 166 ~~~tl~eia~~~~~~~~~i~~~~~~l~~~l~ 196 (309)
-+.|..|||+.++++...+.....+..+.|.
T Consensus 29 ~~~s~~eIA~~l~is~~tV~~~~~ra~~kLr 59 (73)
T 1ku3_A 29 REHTLEEVGAYFGVTRERIRQIENKALRKLK 59 (73)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 4789999999999999998887777776666
No 345
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=55.56 E-value=16 Score=23.81 Aligned_cols=31 Identities=26% Similarity=0.253 Sum_probs=27.5
Q ss_pred CccHHHHHHHhcccHHHHHHHHHHHHHHhcc
Q psy6534 167 PRTFKEICAVSKISKKEIGRCFKLILKALET 197 (309)
Q Consensus 167 ~~tl~eia~~~~~~~~~i~~~~~~l~~~l~~ 197 (309)
..+.+|||+.++++...+.....++.+.|+.
T Consensus 26 g~s~~eIA~~l~is~~tV~~~~~~~~~kl~~ 56 (74)
T 1fse_A 26 DKTTKEIASELFISEKTVRNHISNAMQKLGV 56 (74)
T ss_dssp TCCHHHHHHHHTSCHHHHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHHHCC
Confidence 3489999999999999999999988888875
No 346
>1u8b_A ADA polyprotein; protein-DNA complex, methylation, zinc, helix-turn-helix, metal binding protein/DNA complex; 2.10A {Escherichia coli} PDB: 1zgw_A* 1wpk_A* 1adn_A 1eyf_A
Probab=55.49 E-value=11 Score=28.13 Aligned_cols=28 Identities=7% Similarity=0.178 Sum_probs=24.9
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHHH
Q psy6534 259 SDKRSQKEIGDIAGVAEVTIRQSYKLMY 286 (309)
Q Consensus 259 ~~~~~~~~ia~~~~vs~~ti~~~~kei~ 286 (309)
..++++.+||+.+|+|+.++.+.||+..
T Consensus 91 ~~~~sl~~lA~~~g~S~~~f~r~Fk~~~ 118 (133)
T 1u8b_A 91 ETPVTLEALADQVAMSPFHLHRLFKATT 118 (133)
T ss_dssp SSCCCHHHHHHHHTSCHHHHHHHHHHHT
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 4678999999999999999999998764
No 347
>2ef8_A C.ECOT38IS, putative transcription factor; helix-turn-helix, DNA binding protein, transcription regulator; HET: CME; 1.95A {Enterobacteria phage P2}
Probab=55.35 E-value=9.5 Score=25.61 Aligned_cols=24 Identities=21% Similarity=0.232 Sum_probs=20.2
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHH
Q psy6534 260 DKRSQKEIGDIAGVAEVTIRQSYK 283 (309)
Q Consensus 260 ~~~~~~~ia~~~~vs~~ti~~~~k 283 (309)
..+++.++|+.+|++..||.+..+
T Consensus 22 ~glsq~~lA~~~gis~~~i~~~e~ 45 (84)
T 2ef8_A 22 ASLSQSELAIFLGLSQSDISKIES 45 (84)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred cCCCHHHHHHHhCCCHHHHHHHHc
Confidence 458999999999999999977543
No 348
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=55.08 E-value=17 Score=27.58 Aligned_cols=28 Identities=11% Similarity=0.201 Sum_probs=26.5
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHHh
Q psy6534 261 KRSQKEIGDIAGVAEVTIRQSYKLMYPH 288 (309)
Q Consensus 261 ~~~~~~ia~~~~vs~~ti~~~~kei~~~ 288 (309)
++++.+||+.++++..|+.+..+.|.+.
T Consensus 58 ~~t~~ela~~l~is~~tvs~~l~~Le~~ 85 (154)
T 2eth_A 58 PKKMKEIAEFLSTTKSNVTNVVDSLEKR 85 (154)
T ss_dssp CBCHHHHHHHTTSCHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 7999999999999999999999999876
No 349
>2wiu_B HTH-type transcriptional regulator HIPB; transferase transcription complex, serine kinase, DNA-bindin mercury derivative, repressor; 2.35A {Escherichia coli} PDB: 3dnv_B* 3dnw_B* 3hzi_B*
Probab=54.89 E-value=12 Score=25.37 Aligned_cols=24 Identities=21% Similarity=0.303 Sum_probs=20.7
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHH
Q psy6534 260 DKRSQKEIGDIAGVAEVTIRQSYK 283 (309)
Q Consensus 260 ~~~~~~~ia~~~~vs~~ti~~~~k 283 (309)
..+++.++|+.+|++..||.+..+
T Consensus 24 ~glsq~~lA~~~gis~~~i~~~e~ 47 (88)
T 2wiu_B 24 NGWTQSELAKKIGIKQATISNFEN 47 (88)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHH
T ss_pred cCCCHHHHHHHhCCCHHHHHHHHc
Confidence 457999999999999999987654
No 350
>3eus_A DNA-binding protein; structural genomics, PSI2,MCSG, protein structure initiative, midwest center for structural genomic binding; 1.80A {Silicibacter pomeroyi}
Probab=54.89 E-value=9.4 Score=26.20 Aligned_cols=23 Identities=4% Similarity=0.043 Sum_probs=20.1
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHH
Q psy6534 260 DKRSQKEIGDIAGVAEVTIRQSY 282 (309)
Q Consensus 260 ~~~~~~~ia~~~~vs~~ti~~~~ 282 (309)
..+|++++|+.+|++..||.+.-
T Consensus 26 ~gltq~elA~~~gis~~~is~~E 48 (86)
T 3eus_A 26 AGLTQADLAERLDKPQSFVAKVE 48 (86)
T ss_dssp TTCCHHHHHHHTTCCHHHHHHHH
T ss_pred cCCCHHHHHHHhCcCHHHHHHHH
Confidence 45899999999999999998753
No 351
>3eus_A DNA-binding protein; structural genomics, PSI2,MCSG, protein structure initiative, midwest center for structural genomic binding; 1.80A {Silicibacter pomeroyi}
Probab=54.78 E-value=41 Score=22.76 Aligned_cols=49 Identities=4% Similarity=-0.070 Sum_probs=35.3
Q ss_pred CCccHHHHHHHhcccHHHHHHHHHHHHHHhcccCCCCChHHHHHHHHhhCCCCHHHHH
Q psy6534 166 VPRTFKEICAVSKISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQK 223 (309)
Q Consensus 166 ~~~tl~eia~~~~~~~~~i~~~~~~l~~~l~~~~~~~~p~~~i~~~~~~L~l~~~~~~ 223 (309)
...|..|+|+.++++...|.+..+ |...| ....+.+++..|++++...+
T Consensus 26 ~gltq~elA~~~gis~~~is~~E~------G~~~p---~~~~l~~ia~~l~v~~~~~~ 74 (86)
T 3eus_A 26 AGLTQADLAERLDKPQSFVAKVET------RERRL---DVIEFAKWMAACEGLDVVSE 74 (86)
T ss_dssp TTCCHHHHHHHTTCCHHHHHHHHT------TSSCC---BHHHHHHHHHHTTCGGGHHH
T ss_pred cCCCHHHHHHHhCcCHHHHHHHHC------CCCCC---CHHHHHHHHHHcCCCcHHHH
Confidence 468999999999999888765543 32222 35677889999999875433
No 352
>4a5n_A Uncharacterized HTH-type transcriptional regulato; activator, DNA binding, MARR-like; 1.81A {Bacillus subtilis} PDB: 4a5m_A
Probab=54.75 E-value=25 Score=26.62 Aligned_cols=31 Identities=10% Similarity=0.194 Sum_probs=28.1
Q ss_pred CCCCCHHHHHHHh-CCCHHHHHHHHHHHHHhh
Q psy6534 259 SDKRSQKEIGDIA-GVAEVTIRQSYKLMYPHA 289 (309)
Q Consensus 259 ~~~~~~~~ia~~~-~vs~~ti~~~~kei~~~~ 289 (309)
.-+.+..|+++.+ |++..++.+..++|.+.-
T Consensus 37 ~g~~rf~eL~~~l~gIs~~~Ls~~L~~Le~~G 68 (131)
T 4a5n_A 37 DGKKRFNEFRRICPSITQRMLTLQLRELEADG 68 (131)
T ss_dssp TSCBCHHHHHHHCTTSCHHHHHHHHHHHHHTT
T ss_pred cCCcCHHHHHHHhcccCHHHHHHHHHHHHHCC
Confidence 4578999999999 999999999999998764
No 353
>3clo_A Transcriptional regulator; NP_811094.1, bacterial regulatory proteins, LUXR family, structural genomics; 2.04A {Bacteroides thetaiotaomicron vpi-5482}
Probab=54.70 E-value=13 Score=31.48 Aligned_cols=31 Identities=19% Similarity=0.135 Sum_probs=26.5
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHhhc
Q psy6534 260 DKRSQKEIGDIAGVAEVTIRQSYKLMYPHAS 290 (309)
Q Consensus 260 ~~~~~~~ia~~~~vs~~ti~~~~kei~~~~~ 290 (309)
...+.+|||+.+|+|+.|++.+...+.+...
T Consensus 211 ~G~s~~EIA~~L~iS~~TVk~~l~ra~~kL~ 241 (258)
T 3clo_A 211 KGLSSKEIAATLYISVNTVNRHRQNILEKLS 241 (258)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHHHHHHHHc
Confidence 4579999999999999999999888776543
No 354
>3f1b_A TETR-like transcriptional regulator; APC5888, rhodococcus SP. RHA1, structural genomics, PS protein structure initiative; 2.40A {Rhodococcus}
Probab=54.57 E-value=16 Score=28.43 Aligned_cols=38 Identities=18% Similarity=0.148 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHhCCC-CCCHHHHHHHhCCCHHHHHHHHH
Q psy6534 245 SVAAAAIYMASQASSD-KRSQKEIGDIAGVAEVTIRQSYK 283 (309)
Q Consensus 245 ~iaaAaiyla~~~~~~-~~~~~~ia~~~~vs~~ti~~~~k 283 (309)
.|..|++-+..+. |+ .+|.++||+.+||+..|+-+.|+
T Consensus 18 ~Il~aa~~l~~~~-G~~~~ti~~Ia~~agvs~~t~Y~~F~ 56 (203)
T 3f1b_A 18 QMLDAAVDVFSDR-GFHETSMDAIAAKAEISKPMLYLYYG 56 (203)
T ss_dssp HHHHHHHHHHHHH-CTTTCCHHHHHHHTTSCHHHHHHHCC
T ss_pred HHHHHHHHHHHHc-CcccccHHHHHHHhCCchHHHHHHhC
Confidence 3455555444443 54 79999999999999999988774
No 355
>3ppb_A Putative TETR family transcription regulator; DNA-binding, helix-turn-helix motif, HTH motif, DNA/RNA-BIND helical bundle fold; HET: MSE PG4; 2.10A {Shewanella loihica}
Probab=54.40 E-value=17 Score=28.08 Aligned_cols=40 Identities=20% Similarity=0.208 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHhCC-CCCCHHHHHHHhCCCHHHHHHHHHH
Q psy6534 244 ISVAAAAIYMASQASS-DKRSQKEIGDIAGVAEVTIRQSYKL 284 (309)
Q Consensus 244 ~~iaaAaiyla~~~~~-~~~~~~~ia~~~~vs~~ti~~~~ke 284 (309)
..|..|++-+..+ .| ..+|.++||+.+|||..|+-+.|+.
T Consensus 12 ~~Il~aa~~l~~~-~G~~~~tv~~Ia~~agvs~~t~Y~~F~s 52 (195)
T 3ppb_A 12 QAILETALQLFVS-QGFHGTSTATIAREAGVATGTLFHHFPS 52 (195)
T ss_dssp HHHHHHHHHHHHH-TCSTTSCHHHHHHHHTCCHHHHHHHCSS
T ss_pred HHHHHHHHHHHHh-cCcccCCHHHHHHHhCCChhHHHHHcCC
Confidence 4455566655554 46 4799999999999999999887743
No 356
>3vp5_A Transcriptional regulator; heme, sensor protein, TETR superf transcription; HET: HEM; 1.90A {Lactococcus lactis} PDB: 3vox_A 3vok_A*
Probab=54.39 E-value=16 Score=28.65 Aligned_cols=40 Identities=13% Similarity=-0.022 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHhCCC-CCCHHHHHHHhCCCHHHHHHHHHH
Q psy6534 244 ISVAAAAIYMASQASSD-KRSQKEIGDIAGVAEVTIRQSYKL 284 (309)
Q Consensus 244 ~~iaaAaiyla~~~~~~-~~~~~~ia~~~~vs~~ti~~~~ke 284 (309)
..|..|++-+..+ .|. .+|.++||+.+||+..|+=..|+.
T Consensus 15 ~~Il~aa~~l~~~-~G~~~~ti~~Ia~~agvs~~t~Y~~F~~ 55 (189)
T 3vp5_A 15 NRVYDACLNEFQT-HSFHEAKIMHIVKALDIPRGSFYQYFED 55 (189)
T ss_dssp HHHHHHHHHHHHH-SCTTTCCHHHHHHHHTCCHHHHHHHCSS
T ss_pred HHHHHHHHHHHHH-CCcccccHHHHHHHhCCChHHHHHHCCC
Confidence 4455566655544 454 789999999999999999776643
No 357
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=54.34 E-value=11 Score=27.98 Aligned_cols=30 Identities=10% Similarity=0.100 Sum_probs=27.3
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHhh
Q psy6534 260 DKRSQKEIGDIAGVAEVTIRQSYKLMYPHA 289 (309)
Q Consensus 260 ~~~~~~~ia~~~~vs~~ti~~~~kei~~~~ 289 (309)
.++++.+||+.++++.+|+.+..+.|.+.-
T Consensus 52 ~~~t~~eLa~~l~~~~~tvs~~l~~Le~~G 81 (127)
T 2frh_A 52 KEYYLKDIINHLNYKQPQVVKAVKILSQED 81 (127)
T ss_dssp SEEEHHHHHHHSSSHHHHHHHHHHHHHHTT
T ss_pred CCcCHHHHHHHHCCCHHHHHHHHHHHHHCC
Confidence 568999999999999999999999998763
No 358
>2au3_A DNA primase; zinc ribbon, toprim, RNA polymerase, DNA replication, transf; HET: DNA; 2.00A {Aquifex aeolicus}
Probab=54.22 E-value=7.1 Score=35.76 Aligned_cols=25 Identities=28% Similarity=0.452 Sum_probs=21.3
Q ss_pred cCCCCCCC--CeeeeCCCCceecCCCC
Q psy6534 7 CCYEHPDA--PLIEDYRAGDQICSECG 31 (309)
Q Consensus 7 ~Cp~C~~~--~~v~D~~~G~~vC~~CG 31 (309)
.||.|+.. .+..++..|...|-.||
T Consensus 36 ~CPfh~ektpSf~V~~~k~~~~CFgCg 62 (407)
T 2au3_A 36 NCPFHPDDTPSFYVSPSKQIFKCFGCG 62 (407)
T ss_dssp CCSSSCCSSCCEEEETTTTEEEETTTC
T ss_pred eCcCCCCCCCeEEEECCCCEEEECCCC
Confidence 69999753 57788889999999998
No 359
>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B
Probab=54.04 E-value=43 Score=23.85 Aligned_cols=51 Identities=14% Similarity=0.165 Sum_probs=34.1
Q ss_pred CCccHHHHHHHhcccHHHHHHHHHHHHHHhcccCCCCChHHHHHHHHhhCCCCHH
Q psy6534 166 VPRTFKEICAVSKISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNM 220 (309)
Q Consensus 166 ~~~tl~eia~~~~~~~~~i~~~~~~l~~~l~~~~~~~~p~~~i~~~~~~L~l~~~ 220 (309)
-+.|+.|||..+|++...+.....+-.+.|..... ...+..|...-+.|++
T Consensus 38 e~~s~~EIA~~lgiS~~tVr~~~~rAlkkLR~~~~----~~~l~~~~~~~~~~~~ 88 (99)
T 3t72_q 38 TDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSR----SEVLRSGSSGSGTPEE 88 (99)
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHhcCCCHH
Confidence 47899999999999988877665544444432211 2456666666677664
No 360
>3lwj_A Putative TETR-family transcriptional regulator; structural G joint center for structural genomics, JCSG, protein structu initiative; 2.07A {Syntrophomonas wolfei subsp}
Probab=53.91 E-value=18 Score=28.34 Aligned_cols=38 Identities=11% Similarity=0.100 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHhCCC-CCCHHHHHHHhCCCHHHHHHHHHH
Q psy6534 246 VAAAAIYMASQASSD-KRSQKEIGDIAGVAEVTIRQSYKL 284 (309)
Q Consensus 246 iaaAaiyla~~~~~~-~~~~~~ia~~~~vs~~ti~~~~ke 284 (309)
|..|++-+..+ .|. .+|.++||+.+|||..|+-+.|+.
T Consensus 17 Il~aa~~l~~~-~G~~~~t~~~Ia~~agvs~~t~Y~~F~s 55 (202)
T 3lwj_A 17 ILTCSLDLFIE-KGYYNTSIRDIIALSEVGTGTFYNYFVD 55 (202)
T ss_dssp HHHHHHHHHHH-HCTTTCCHHHHHHHHCSCHHHHHHHCSS
T ss_pred HHHHHHHHHHH-cCcccCCHHHHHHHhCCCchhHHHHcCC
Confidence 44455544444 365 699999999999999999887743
No 361
>2qtq_A Transcriptional regulator, TETR family; transcription regulator, DNA/RNA-binding 3-helical bundle FO turn helix motif, HTH motif; HET: MSE; 1.85A {Novosphingobium aromaticivorans} PDB: 2rha_A*
Probab=53.81 E-value=23 Score=27.74 Aligned_cols=40 Identities=10% Similarity=0.054 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHhCCC-CCCHHHHHHHhCCCHHHHHHHHHH
Q psy6534 244 ISVAAAAIYMASQASSD-KRSQKEIGDIAGVAEVTIRQSYKL 284 (309)
Q Consensus 244 ~~iaaAaiyla~~~~~~-~~~~~~ia~~~~vs~~ti~~~~ke 284 (309)
..|..|++-+..+ .|. ..|.++||+.+|||..||-..|+.
T Consensus 19 ~~Il~aa~~lf~~-~G~~~~t~~~Ia~~agvs~~t~Y~~F~s 59 (213)
T 2qtq_A 19 DLLLQTASNIMRE-GDVVDISLSELSLRSGLNSALVKYYFGN 59 (213)
T ss_dssp HHHHHHHHHHHHH-HTSSCCCHHHHHHHHCCCHHHHHHHHSS
T ss_pred HHHHHHHHHHHHH-cCcccccHHHHHHHhCCChhhHhHhcCC
Confidence 4455555554444 354 799999999999999999888843
No 362
>3lcz_A YCZA, inhibitor of trap, regulated by T-box (Trp) seque; anti-trap, tryptophan RNA-binding attenuation PROT transcription attenuation; 2.06A {Bacillus licheniformis} PDB: 3ld0_A
Probab=53.75 E-value=7.1 Score=24.72 Aligned_cols=19 Identities=16% Similarity=0.420 Sum_probs=12.9
Q ss_pred ccCCCCCCCC-eeeeCCCCceecCCC
Q psy6534 6 VCCYEHPDAP-LIEDYRAGDQICSEC 30 (309)
Q Consensus 6 ~~Cp~C~~~~-~v~D~~~G~~vC~~C 30 (309)
..||.|+.+- ++. ..|..|
T Consensus 10 ~~C~~C~GsG~~i~------~~C~~C 29 (53)
T 3lcz_A 10 TTCPNCNGSGREEP------EPCPKC 29 (53)
T ss_dssp EECTTTTTSCEETT------EECTTT
T ss_pred ccCcCCcccccCCC------CcCCCC
Confidence 4899996653 332 568888
No 363
>2l8n_A Transcriptional repressor CYTR; bacterial gene repressor, helix turn helix binding domain, L family, transcription regulation, binding protein; NMR {Escherichia coli} PDB: 2lcv_A
Probab=53.60 E-value=8.1 Score=25.60 Aligned_cols=45 Identities=13% Similarity=0.279 Sum_probs=29.5
Q ss_pred CccHHHHHHHhcccHHHHHHHHHHHHHHhcccCCCCCh--HHHHHHHHhhCCCCH
Q psy6534 167 PRTFKEICAVSKISKKEIGRCFKLILKALETSVDLITT--GDFMSRFCSNLSLPN 219 (309)
Q Consensus 167 ~~tl~eia~~~~~~~~~i~~~~~~l~~~l~~~~~~~~p--~~~i~~~~~~L~l~~ 219 (309)
..|++|||+.+|++...+.++++ -. +.+.+ ..-|..++.+||..+
T Consensus 9 ~~t~~diA~~aGVS~sTVSr~ln-------~~-~~vs~~t~~rV~~~a~~lgY~p 55 (67)
T 2l8n_A 9 AATMKDVALKAKVSTATVSRALM-------NP-DKVSQATRNRVEKAAREVGYLP 55 (67)
T ss_dssp CCCHHHHHHHTTCCHHHHHHTTT-------CC-CCSCHHHHHHHHHHHHHHCCCC
T ss_pred CCCHHHHHHHHCCCHHHHHHHHc-------CC-CCCCHHHHHHHHHHHHHhCCCc
Confidence 47999999999999888876543 11 22333 234566677777643
No 364
>2ict_A Antitoxin HIGA; helix-turn-helix, structural genomics, PSI-2, protein struct initiative, northeast structural genomics consortium, NESG; 1.63A {Escherichia coli} SCOP: a.35.1.3 PDB: 2icp_A
Probab=53.48 E-value=13 Score=25.80 Aligned_cols=23 Identities=17% Similarity=0.141 Sum_probs=18.9
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHH
Q psy6534 261 KRSQKEIGDIAGVAEVTIRQSYK 283 (309)
Q Consensus 261 ~~~~~~ia~~~~vs~~ti~~~~k 283 (309)
.+++.++|+.+||+..||.+..+
T Consensus 21 gltq~~lA~~~gis~~~is~~e~ 43 (94)
T 2ict_A 21 NVSLREFARAMEIAPSTASRLLT 43 (94)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHHH
T ss_pred CCCHHHHHHHhCCCHHHHHHHHc
Confidence 47889999999999999877654
No 365
>2ewt_A BLDD, putative DNA-binding protein; the DNA-binding domain of BLDD; 1.81A {Streptomyces coelicolor}
Probab=53.37 E-value=13 Score=23.91 Aligned_cols=24 Identities=8% Similarity=0.028 Sum_probs=20.1
Q ss_pred CCCCHHHHHHHhC--CCHHHHHHHHH
Q psy6534 260 DKRSQKEIGDIAG--VAEVTIRQSYK 283 (309)
Q Consensus 260 ~~~~~~~ia~~~~--vs~~ti~~~~k 283 (309)
..++++++|+.+| ++..||.+.-+
T Consensus 20 ~glsq~~lA~~~g~~is~~~i~~~e~ 45 (71)
T 2ewt_A 20 QGLSLHGVEEKSQGRWKAVVVGSYER 45 (71)
T ss_dssp TTCCHHHHHHHTTTSSCHHHHHHHHH
T ss_pred cCCCHHHHHHHHCCcCCHHHHHHHHC
Confidence 4579999999999 99999877543
No 366
>2hin_A GP39, repressor protein; transcription factor, dimer interface, helix-turn-helix; 1.05A {Enterobacteria phage N15} PDB: 3qws_A
Probab=53.33 E-value=9.8 Score=25.62 Aligned_cols=19 Identities=16% Similarity=0.036 Sum_probs=16.9
Q ss_pred CHHHHHHHhCCCHHHHHHH
Q psy6534 263 SQKEIGDIAGVAEVTIRQS 281 (309)
Q Consensus 263 ~~~~ia~~~~vs~~ti~~~ 281 (309)
++.++|+.+|||..||.+=
T Consensus 12 ~~~~lA~~lGVs~~aVs~W 30 (71)
T 2hin_A 12 DVEKAAVGVGVTPGAVYQW 30 (71)
T ss_dssp SHHHHHHHHTSCHHHHHHH
T ss_pred CHHHHHHHHCCCHHHHHHH
Confidence 4899999999999999665
No 367
>3qp6_A CVIR transcriptional regulator; quorum sensing, agonist, antagonist, LUXR, acylated homoseri lactone, transcription factor; HET: HL6; 2.00A {Chromobacterium violaceum} PDB: 3qp5_A*
Probab=53.30 E-value=12 Score=31.87 Aligned_cols=30 Identities=17% Similarity=0.196 Sum_probs=26.6
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHhh
Q psy6534 260 DKRSQKEIGDIAGVAEVTIRQSYKLMYPHA 289 (309)
Q Consensus 260 ~~~~~~~ia~~~~vs~~ti~~~~kei~~~~ 289 (309)
...+.+|||+.+|+|+.|++...+.+.+..
T Consensus 211 ~G~s~~eIA~~l~is~~TV~~~~~~~~~kl 240 (265)
T 3qp6_A 211 RGKTNWEIATILNISERTVKFHVANVIRKL 240 (265)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHHHHHHHT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHHHHHHHh
Confidence 467899999999999999999999988754
No 368
>3bd1_A CRO protein; transcription factor, helix-turn-helix, prophage, structural evolution, transcription; 1.40A {Xylella fastidiosa}
Probab=53.27 E-value=12 Score=25.04 Aligned_cols=21 Identities=19% Similarity=0.169 Sum_probs=19.1
Q ss_pred CHHHHHHHhCCCHHHHHHHHH
Q psy6534 263 SQKEIGDIAGVAEVTIRQSYK 283 (309)
Q Consensus 263 ~~~~ia~~~~vs~~ti~~~~k 283 (309)
++.++|+.+||+..||.+..+
T Consensus 13 sq~~lA~~lgvs~~~is~~e~ 33 (79)
T 3bd1_A 13 SVSALAASLGVRQSAISNWRA 33 (79)
T ss_dssp SHHHHHHHHTCCHHHHHHHHH
T ss_pred CHHHHHHHHCCCHHHHHHHHH
Confidence 899999999999999988655
No 369
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=53.01 E-value=29 Score=25.78 Aligned_cols=28 Identities=25% Similarity=0.328 Sum_probs=26.2
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHHh
Q psy6534 261 KRSQKEIGDIAGVAEVTIRQSYKLMYPH 288 (309)
Q Consensus 261 ~~~~~~ia~~~~vs~~ti~~~~kei~~~ 288 (309)
++++.+||+.++++.+|+.+..+.|.+.
T Consensus 45 ~~t~~eLa~~l~~~~~tvs~~l~~Le~~ 72 (145)
T 3g3z_A 45 SRTQKHIGEKWSLPKQTVSGVCKTLAGQ 72 (145)
T ss_dssp SBCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 5999999999999999999999999875
No 370
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=52.97 E-value=16 Score=27.21 Aligned_cols=29 Identities=7% Similarity=0.069 Sum_probs=23.8
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHh
Q psy6534 260 DKRSQKEIGDIAGVAEVTIRQSYKLMYPH 288 (309)
Q Consensus 260 ~~~~~~~ia~~~~vs~~ti~~~~kei~~~ 288 (309)
-++++.+||+.+|++.+|+.+..+.|.+.
T Consensus 50 ~~~t~~eLa~~l~~~~~tvs~~l~~L~~~ 78 (142)
T 3ech_A 50 RGLNLQDLGRQMCRDKALITRKIRELEGR 78 (142)
T ss_dssp TTCCHHHHHHHHC---CHHHHHHHHHHHT
T ss_pred CCcCHHHHHHHhCCCHHHHHHHHHHHHHC
Confidence 37999999999999999999999999876
No 371
>3mky_B Protein SOPB; partition, F plasmid, centromere, DNA binding protein- complex; HET: DNA; 2.86A {Escherichia coli} PDB: 3mkw_B* 3mkz_A*
Probab=52.95 E-value=19 Score=29.18 Aligned_cols=35 Identities=9% Similarity=0.112 Sum_probs=29.2
Q ss_pred HHHHHHhCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q psy6534 251 IYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLM 285 (309)
Q Consensus 251 iyla~~~~~~~~~~~~ia~~~~vs~~ti~~~~kei 285 (309)
=|....-.+..-+|+++|+.+|+|+..|.++.+--
T Consensus 32 ~y~r~L~~g~~~~Q~~lA~~~giS~a~VSR~L~~A 66 (189)
T 3mky_B 32 RYASRLQNEFAGNISALADAENISRKIITRCINTA 66 (189)
T ss_dssp HHHHHHHTTTTTCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHhcCcccCHHHHHHHHCCCHHHHHHHHHHh
Confidence 35555567788999999999999999999988754
No 372
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=52.91 E-value=18 Score=25.28 Aligned_cols=31 Identities=26% Similarity=0.285 Sum_probs=26.8
Q ss_pred CccHHHHHHHhcccHHHHHHHHHHHHHHhcc
Q psy6534 167 PRTFKEICAVSKISKKEIGRCFKLILKALET 197 (309)
Q Consensus 167 ~~tl~eia~~~~~~~~~i~~~~~~l~~~l~~ 197 (309)
..+.+|||+.++++...+......+.+.|+.
T Consensus 44 G~s~~eIA~~L~iS~~TV~~~~~~i~~Klgv 74 (90)
T 3ulq_B 44 GFTNQEIADALHLSKRSIEYSLTSIFNKLNV 74 (90)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHHHHCC
Confidence 3578999999999999998888888888875
No 373
>2p8t_A Hypothetical protein PH0730; pyrococcus horikoshii OT3, STR genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.72 d.74.4.2
Probab=52.86 E-value=18 Score=29.65 Aligned_cols=30 Identities=13% Similarity=0.200 Sum_probs=27.4
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHHHHh
Q psy6534 259 SDKRSQKEIGDIAGVAEVTIRQSYKLMYPH 288 (309)
Q Consensus 259 ~~~~~~~~ia~~~~vs~~ti~~~~kei~~~ 288 (309)
+.+++.++||+.+|+++.|++...+.|.+.
T Consensus 28 ~~~V~~~~LA~~LgvS~~SV~~~lkkL~e~ 57 (200)
T 2p8t_A 28 KEPLGRKQISERLELGEGSVRTLLRKLSHL 57 (200)
T ss_dssp TSCBCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred cCCccHHHHHHHhCCCHHHHHHHHHHHHHC
Confidence 467899999999999999999999999876
No 374
>1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} SCOP: a.4.5.1 b.34.1.1 d.104.1.2 PDB: 1bib_A* 1hxd_A* 2ewn_A*
Probab=52.51 E-value=18 Score=31.82 Aligned_cols=31 Identities=13% Similarity=0.332 Sum_probs=27.6
Q ss_pred CCCCCCHHHHHHHhCCCHHHHHHHHHHHHHh
Q psy6534 258 SSDKRSQKEIGDIAGVAEVTIRQSYKLMYPH 288 (309)
Q Consensus 258 ~~~~~~~~~ia~~~~vs~~ti~~~~kei~~~ 288 (309)
.+..++.+++|+.+|||+.||++..+.|.+.
T Consensus 16 ~~~~~s~~eLa~~l~vS~~ti~r~l~~L~~~ 46 (321)
T 1bia_A 16 NGEFHSGEQLGETLGMSRAAINKHIQTLRDW 46 (321)
T ss_dssp TSSCBCHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred cCCCcCHHHHHHHHCCCHHHHHHHHHHHHhC
Confidence 3456899999999999999999999999874
No 375
>2h09_A Transcriptional regulator MNTR; transcription regulator, diphtheria toxin, manganese transport, structural genomics, NPPSFA; 2.10A {Escherichia coli}
Probab=52.48 E-value=15 Score=28.05 Aligned_cols=29 Identities=17% Similarity=0.229 Sum_probs=26.6
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHh
Q psy6534 260 DKRSQKEIGDIAGVAEVTIRQSYKLMYPH 288 (309)
Q Consensus 260 ~~~~~~~ia~~~~vs~~ti~~~~kei~~~ 288 (309)
...++.++|+.+|++..|+++.++.|.+.
T Consensus 53 ~~~~~~~la~~l~vs~~tvs~~l~~Le~~ 81 (155)
T 2h09_A 53 GEARQVDMAARLGVSQPTVAKMLKRLATM 81 (155)
T ss_dssp SCCCHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred CCcCHHHHHHHhCcCHHHHHHHHHHHHHC
Confidence 45799999999999999999999999876
No 376
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=52.48 E-value=36 Score=23.86 Aligned_cols=48 Identities=13% Similarity=0.045 Sum_probs=32.1
Q ss_pred HHHHHHHHhcCCCccHHHHHHHhcccHHHHHHHHHHHHHHhcccCCCCChHHHHHH
Q psy6534 155 ACLYIACRQEGVPRTFKEICAVSKISKKEIGRCFKLILKALETSVDLITTGDFMSR 210 (309)
Q Consensus 155 Acly~acR~~~~~~tl~eia~~~~~~~~~i~~~~~~l~~~l~~~~~~~~p~~~i~~ 210 (309)
+.-|+--...+-+.++.++|+.++++...|.+.++.. .|. .|..|+.+
T Consensus 7 i~~~i~~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~~---~g~-----s~~~~~~~ 54 (103)
T 3lsg_A 7 IQNIIEESYTDSQFTLSVLSEKLDLSSGYLSIMFKKN---FGI-----PFQDYLLQ 54 (103)
T ss_dssp HHHHHHHHTTCTTCCHHHHHHHTTCCHHHHHHHHHHH---HSS-----CHHHHHHH
T ss_pred HHHHHHHHccCCCCCHHHHHHHHCcCHHHHHHHHHHH---HCc-----CHHHHHHH
Confidence 3344443334447899999999999999987776643 443 35666654
No 377
>1vzi_A Desulfoferrodoxin; ferrocyanide, microspectrophotometry, redox states, photoreduction, dinuclear iron cluster, oxidoreductase; 1.15A {Desulfovibrio baarsii} SCOP: b.1.13.1 g.41.5.2 PDB: 1vzh_A* 1vzg_A 2ji1_A 2ji2_A 2ji3_A 1dfx_A
Probab=52.38 E-value=6.6 Score=29.75 Aligned_cols=30 Identities=13% Similarity=0.298 Sum_probs=20.0
Q ss_pred CCcccCCCCCCCCeeeeCCCCceecCCCCccc
Q psy6534 3 INKVCCYEHPDAPLIEDYRAGDQICSECGLVV 34 (309)
Q Consensus 3 ~~~~~Cp~C~~~~~v~D~~~G~~vC~~CG~V~ 34 (309)
..-..|+.||.--.+.....|.++| ||.-+
T Consensus 5 ~~fYkC~~CGnivev~~~g~~~l~C--CG~~m 34 (126)
T 1vzi_A 5 LQVYKCEVCGNIVEVLNGGIGELVC--CNQDM 34 (126)
T ss_dssp TCEEECTTTCCEEEEEECCSSCEEE--TTEEC
T ss_pred CcEEEcCCCCeEEEEEcCCCcceec--CCccc
Confidence 3456899997632222567788888 88655
No 378
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=52.28 E-value=18 Score=28.86 Aligned_cols=30 Identities=10% Similarity=0.165 Sum_probs=27.3
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHHHHh
Q psy6534 259 SDKRSQKEIGDIAGVAEVTIRQSYKLMYPH 288 (309)
Q Consensus 259 ~~~~~~~~ia~~~~vs~~ti~~~~kei~~~ 288 (309)
+.++++.+||+.++++.+|+.+..+.|.+.
T Consensus 55 ~~~~t~~eLa~~l~is~~tvs~~l~~Le~~ 84 (189)
T 3nqo_A 55 EEETTLNNIARKMGTSKQNINRLVANLEKN 84 (189)
T ss_dssp GGGCCHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred CCCcCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 457999999999999999999999999865
No 379
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=52.17 E-value=18 Score=24.87 Aligned_cols=28 Identities=14% Similarity=0.127 Sum_probs=25.7
Q ss_pred CCCHHHHHHHhCCCHH-HHHHHHHHHHHh
Q psy6534 261 KRSQKEIGDIAGVAEV-TIRQSYKLMYPH 288 (309)
Q Consensus 261 ~~~~~~ia~~~~vs~~-ti~~~~kei~~~ 288 (309)
+.+..+||+.+|++.. ++++....|.+.
T Consensus 25 ~~ta~eiA~~Lgit~~~aVr~hL~~Le~e 53 (79)
T 1xmk_A 25 DSSALNLAKNIGLTKARDINAVLIDMERQ 53 (79)
T ss_dssp CEEHHHHHHHHCGGGHHHHHHHHHHHHHT
T ss_pred CcCHHHHHHHcCCCcHHHHHHHHHHHHHC
Confidence 6889999999999999 999999999864
No 380
>4cpa_I Metallocarboxypeptidase inhibitor; hydrolase (C-terminal peptidase); 2.50A {Solanum tuberosum} SCOP: g.3.2.1 PDB: 1h20_A
Probab=52.15 E-value=3.5 Score=23.48 Aligned_cols=22 Identities=18% Similarity=0.244 Sum_probs=16.6
Q ss_pred CCCCCCCeeeeCCCCceecCCC
Q psy6534 9 YEHPDAPLIEDYRAGDQICSEC 30 (309)
Q Consensus 9 p~C~~~~~v~D~~~G~~vC~~C 30 (309)
|.|+++--..|..+|-..|+.|
T Consensus 6 ~~C~KPC~T~DDCS~gw~CqaC 27 (38)
T 4cpa_I 6 PICNKPCKTHDDCSGAWFCQAC 27 (38)
T ss_dssp TTTTCBCSSSSSSCCCSSCCEE
T ss_pred cccCCCccCccccccchHHHHH
Confidence 4566654457888999999987
No 381
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=52.13 E-value=31 Score=23.15 Aligned_cols=29 Identities=17% Similarity=0.100 Sum_probs=25.6
Q ss_pred CCccHHHHHHHhcccHHHHHHHHHHHHHH
Q psy6534 166 VPRTFKEICAVSKISKKEIGRCFKLILKA 194 (309)
Q Consensus 166 ~~~tl~eia~~~~~~~~~i~~~~~~l~~~ 194 (309)
-+.+..|||+.++++...+.+.++.|.+.
T Consensus 13 ~~~s~~eLa~~lgvs~~tv~r~L~~L~~~ 41 (81)
T 2htj_A 13 NGGKTAEIAEALAVTDYQARYYLLLLEKA 41 (81)
T ss_dssp CCCCHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 47899999999999999999988888764
No 382
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=51.98 E-value=21 Score=27.22 Aligned_cols=30 Identities=13% Similarity=0.223 Sum_probs=27.5
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHHHHh
Q psy6534 259 SDKRSQKEIGDIAGVAEVTIRQSYKLMYPH 288 (309)
Q Consensus 259 ~~~~~~~~ia~~~~vs~~ti~~~~kei~~~ 288 (309)
+-++++.+||+.++++..|+.+..+.|.+.
T Consensus 61 ~~~~t~~ela~~l~is~~tvs~~l~~Le~~ 90 (162)
T 2fa5_A 61 YPGSSASEVSDRTAMDKVAVSRAVARLLER 90 (162)
T ss_dssp STTCCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 347999999999999999999999999876
No 383
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=51.96 E-value=24 Score=26.70 Aligned_cols=30 Identities=7% Similarity=0.095 Sum_probs=27.3
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHHHHh
Q psy6534 259 SDKRSQKEIGDIAGVAEVTIRQSYKLMYPH 288 (309)
Q Consensus 259 ~~~~~~~~ia~~~~vs~~ti~~~~kei~~~ 288 (309)
.-++++.+||+.+|++..|+.+..+.|.+.
T Consensus 55 ~~~~t~~ela~~l~i~~~tvs~~l~~Le~~ 84 (155)
T 3cdh_A 55 NDAMMITRLAKLSLMEQSRMTRIVDQMDAR 84 (155)
T ss_dssp CSCBCHHHHHHHTTCCHHHHHHHHHHHHHT
T ss_pred CCCcCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 347899999999999999999999999876
No 384
>1t6s_A Conserved hypothetical protein; A winged helix-turn-helix, structural genomics, BSGC structu by NIH, protein structure initiative, PSI; 1.95A {Chlorobium tepidum tls} SCOP: a.4.5.60 a.4.5.60
Probab=51.90 E-value=19 Score=28.41 Aligned_cols=38 Identities=8% Similarity=0.189 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHhC--CCHHHHHHHHHHHHH
Q psy6534 246 VAAAAIYMASQASSDKRSQKEIGDIAG--VAEVTIRQSYKLMYP 287 (309)
Q Consensus 246 iaaAaiyla~~~~~~~~~~~~ia~~~~--vs~~ti~~~~kei~~ 287 (309)
+.=|+||.+ +.+++.+++++.++ ++..+++....+|.+
T Consensus 11 ~iEAlLf~~----~~pvs~~~La~~~~~~~~~~~v~~~l~~L~~ 50 (162)
T 1t6s_A 11 SLEALIFSS----EEPVNLQTLSQITAHKFTPSELQEAVDELNR 50 (162)
T ss_dssp HHHHHHHHC----SSCBCHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHc----CCCCCHHHHHHHhCcCCCHHHHHHHHHHHHH
Confidence 344555554 78999999999999 999999999999864
No 385
>1lmb_3 Protein (lambda repressor); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 1.80A {Enterobacteria phage lambda} SCOP: a.35.1.2 PDB: 1lrp_A 1rio_A 1lli_A*
Probab=51.85 E-value=11 Score=25.88 Aligned_cols=24 Identities=17% Similarity=0.259 Sum_probs=20.3
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHH
Q psy6534 260 DKRSQKEIGDIAGVAEVTIRQSYK 283 (309)
Q Consensus 260 ~~~~~~~ia~~~~vs~~ti~~~~k 283 (309)
..+++.++|+.+|++..||.+..+
T Consensus 29 ~glsq~~lA~~~gis~~~is~~e~ 52 (92)
T 1lmb_3 29 LGLSQESVADKMGMGQSGVGALFN 52 (92)
T ss_dssp HTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHc
Confidence 357999999999999999987543
No 386
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=51.84 E-value=9.9 Score=30.96 Aligned_cols=28 Identities=14% Similarity=0.360 Sum_probs=21.7
Q ss_pred ccCCCCCCCCeeeeCCCCceecCCCCccc
Q psy6534 6 VCCYEHPDAPLIEDYRAGDQICSECGLVV 34 (309)
Q Consensus 6 ~~Cp~C~~~~~v~D~~~G~~vC~~CG~V~ 34 (309)
..||.||...+...+.. ...|..||+..
T Consensus 114 ~~Cp~Cg~g~fma~h~d-R~~CGkC~~t~ 141 (189)
T 2xzm_9 114 KGCPKCGPGIFMAKHYD-RHYCGKCHLTL 141 (189)
T ss_dssp EECSTTCSSCEEEECSS-CEEETTTCCCB
T ss_pred ccCCccCCCccccCccC-CCccCCceeEE
Confidence 46999997767777644 66999999886
No 387
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=51.80 E-value=20 Score=26.90 Aligned_cols=30 Identities=13% Similarity=0.130 Sum_probs=21.5
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHHHHh
Q psy6534 259 SDKRSQKEIGDIAGVAEVTIRQSYKLMYPH 288 (309)
Q Consensus 259 ~~~~~~~~ia~~~~vs~~ti~~~~kei~~~ 288 (309)
+.++++.+||+.++++.+|+.+..+.|.+.
T Consensus 55 ~~~~t~~eLa~~l~~~~~~vs~~l~~L~~~ 84 (148)
T 3jw4_A 55 ESGIIQKDLAQFFGRRGASITSMLQGLEKK 84 (148)
T ss_dssp TTCCCHHHHHHC------CHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHCCChhHHHHHHHHHHHC
Confidence 367999999999999999999999999876
No 388
>3q87_A Putative uncharacterized protein ECU08_1170; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}
Probab=51.79 E-value=3.6 Score=31.15 Aligned_cols=16 Identities=38% Similarity=0.808 Sum_probs=13.6
Q ss_pred eCCCCceecCCCCccc
Q psy6534 19 DYRAGDQICSECGLVV 34 (309)
Q Consensus 19 D~~~G~~vC~~CG~V~ 34 (309)
+-.+|.++|.+||.+.
T Consensus 94 ~V~EG~L~Cp~cgr~y 109 (125)
T 3q87_A 94 DVVEGSLRCDMCGLIY 109 (125)
T ss_dssp EEEEEEEEETTTCCEE
T ss_pred EEEEEEEECCCCCCEe
Confidence 3467999999999986
No 389
>2ppx_A AGR_C_3184P, uncharacterized protein ATU1735; HTH-motif, XRE-family, structural genomics, PSI-2, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: a.35.1.3
Probab=51.50 E-value=11 Score=26.51 Aligned_cols=22 Identities=23% Similarity=0.093 Sum_probs=19.4
Q ss_pred CCCCHHHHHHHhCCCHHHHHHH
Q psy6534 260 DKRSQKEIGDIAGVAEVTIRQS 281 (309)
Q Consensus 260 ~~~~~~~ia~~~~vs~~ti~~~ 281 (309)
..++++++|+.+||+..||.+.
T Consensus 42 ~glsq~elA~~lgvs~~~is~~ 63 (99)
T 2ppx_A 42 LKLTQEEFSARYHIPLGTLRDW 63 (99)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHH
T ss_pred cCCCHHHHHHHhCcCHHHHHHH
Confidence 4589999999999999999775
No 390
>1l9z_H Sigma factor SIGA; helix-turn-helix, coiled-coil, transcription/DNA complex; 6.50A {Thermus aquaticus} SCOP: i.8.1.1
Probab=51.47 E-value=1.5e+02 Score=27.29 Aligned_cols=28 Identities=25% Similarity=0.305 Sum_probs=24.0
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHH
Q psy6534 260 DKRSQKEIGDIAGVAEVTIRQSYKLMYP 287 (309)
Q Consensus 260 ~~~~~~~ia~~~~vs~~ti~~~~kei~~ 287 (309)
...|++|||+.+|||..||++....-.+
T Consensus 394 e~~TleEIAe~LgIS~erVRqi~~RAlk 421 (438)
T 1l9z_H 394 REHTLEEVGAYFGVTRERIRQIENKALR 421 (438)
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 6899999999999999999987765443
No 391
>1pb6_A Hypothetical transcriptional regulator YCDC; helix-loop-helix, dimer, structural genomics, PSI, protein structure initiative; 2.50A {Escherichia coli} PDB: 3loc_A*
Probab=51.33 E-value=20 Score=28.17 Aligned_cols=39 Identities=21% Similarity=0.286 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHhCC-CCCCHHHHHHHhCCCHHHHHHHHHH
Q psy6534 245 SVAAAAIYMASQASS-DKRSQKEIGDIAGVAEVTIRQSYKL 284 (309)
Q Consensus 245 ~iaaAaiyla~~~~~-~~~~~~~ia~~~~vs~~ti~~~~ke 284 (309)
.|..|++-+..+ .| ..+|.++||+.+|||..|+-+.|+.
T Consensus 22 ~Il~aa~~l~~~-~G~~~~s~~~Ia~~agvs~~t~Y~~F~s 61 (212)
T 1pb6_A 22 AILSAALDTFSQ-FGFHGTRLEQIAELAGVSKTNLLYYFPS 61 (212)
T ss_dssp HHHHHHHHHHHH-HCTTTCCHHHHHHHTTSCHHHHHHHSSS
T ss_pred HHHHHHHHHHHH-cCcchhhHHHHHHHHCCChhHHHHhCCC
Confidence 355555544444 35 4689999999999999999888743
No 392
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=51.24 E-value=30 Score=26.36 Aligned_cols=31 Identities=10% Similarity=0.228 Sum_probs=27.7
Q ss_pred CCCCCCHHHHHHHhCCCHHHHHHHHHHHHHh
Q psy6534 258 SSDKRSQKEIGDIAGVAEVTIRQSYKLMYPH 288 (309)
Q Consensus 258 ~~~~~~~~~ia~~~~vs~~ti~~~~kei~~~ 288 (309)
.+...++.+||+.++++.+|+.+..+.|.+.
T Consensus 43 ~~~~~~~~eLa~~l~~~~~tvs~~v~~Le~~ 73 (151)
T 4aik_A 43 LPPEQSQIQLAKAIGIEQPSLVRTLDQLEEK 73 (151)
T ss_dssp SCTTSCHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred cCCCCcHHHHHHHHCcCHHHHHHHHHHHHhC
Confidence 4556899999999999999999999999875
No 393
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=51.19 E-value=17 Score=26.90 Aligned_cols=29 Identities=10% Similarity=0.139 Sum_probs=26.8
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHh
Q psy6534 260 DKRSQKEIGDIAGVAEVTIRQSYKLMYPH 288 (309)
Q Consensus 260 ~~~~~~~ia~~~~vs~~ti~~~~kei~~~ 288 (309)
.+.++.+||+.++++.+|+.+..+.|.+.
T Consensus 44 ~~~~~~ela~~l~is~~~vs~~l~~L~~~ 72 (142)
T 3bdd_A 44 APLHQLALQERLQIDRAAVTRHLKLLEES 72 (142)
T ss_dssp CSBCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 36899999999999999999999999875
No 394
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=51.16 E-value=22 Score=26.58 Aligned_cols=29 Identities=14% Similarity=-0.005 Sum_probs=26.8
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHh
Q psy6534 260 DKRSQKEIGDIAGVAEVTIRQSYKLMYPH 288 (309)
Q Consensus 260 ~~~~~~~ia~~~~vs~~ti~~~~kei~~~ 288 (309)
-++++.+||+.++++..|+.+..+.|.+.
T Consensus 55 ~~~t~~ela~~l~~~~~tvs~~l~~Le~~ 83 (150)
T 2rdp_A 55 GDLTVGELSNKMYLACSTTTDLVDRMERN 83 (150)
T ss_dssp CSBCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHCCCchhHHHHHHHHHHC
Confidence 36899999999999999999999999876
No 395
>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP}
Probab=51.05 E-value=11 Score=27.64 Aligned_cols=30 Identities=7% Similarity=0.047 Sum_probs=26.9
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHHHHh
Q psy6534 259 SDKRSQKEIGDIAGVAEVTIRQSYKLMYPH 288 (309)
Q Consensus 259 ~~~~~~~~ia~~~~vs~~ti~~~~kei~~~ 288 (309)
.-+.+..+||+.+|++..|+.+..+.|.+.
T Consensus 29 ~~~~~~~eLa~~l~is~~tvs~hL~~L~~~ 58 (118)
T 3f6o_A 29 RGPATVSELAKPFDMALPSFMKHIHFLEDS 58 (118)
T ss_dssp TCCEEHHHHHTTCCSCHHHHHHHHHHHHHT
T ss_pred hCCCCHHHHHHHhCcCHHHHHHHHHHHHHC
Confidence 356899999999999999999999999765
No 396
>2g7s_A Transcriptional regulator, TETR family; APC5906, PSI, protein structure initiat midwest center for structural genomics, MCSG; HET: MSE; 1.40A {Agrobacterium tumefaciens str} SCOP: a.4.1.9 a.121.1.1
Probab=50.94 E-value=15 Score=28.33 Aligned_cols=39 Identities=13% Similarity=0.244 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHhCCC-CCCHHHHHHHhCCCHHHHHHHHHH
Q psy6534 245 SVAAAAIYMASQASSD-KRSQKEIGDIAGVAEVTIRQSYKL 284 (309)
Q Consensus 245 ~iaaAaiyla~~~~~~-~~~~~~ia~~~~vs~~ti~~~~ke 284 (309)
.|..|++-+..+ .|. .+|.++||+.+|||..|+-+.|..
T Consensus 12 ~Il~aa~~l~~~-~G~~~~ti~~Ia~~agvs~~t~Y~~F~s 51 (194)
T 2g7s_A 12 DILQCARTLIIR-GGYNSFSYADISQVVGIRNASIHHHFPS 51 (194)
T ss_dssp HHHHHHHHHHHH-HCGGGCCHHHHHHHHCCCHHHHHHHCSS
T ss_pred HHHHHHHHHHHH-cCcccCCHHHHHHHhCCCchHHHHHcCC
Confidence 344555544444 354 689999999999999999887743
No 397
>1twf_I B12.6, DNA-directed RNA polymerase II 14.2 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.3.1 g.41.3.1 PDB: 1i3q_I 1i6h_I 1k83_I* 1nik_I 1nt9_I 1pqv_I 1r5u_I 1r9s_I* 1r9t_I* 1sfo_I* 1twa_I* 1twc_I* 1i50_I* 1twg_I* 1twh_I* 1wcm_I 1y1v_I 1y1w_I 1y1y_I 1y77_I* ...
Probab=50.89 E-value=15 Score=27.46 Aligned_cols=28 Identities=11% Similarity=0.115 Sum_probs=19.1
Q ss_pred ccCCCCCCCCeee-e--------CCCCceecCCCCcc
Q psy6534 6 VCCYEHPDAPLIE-D--------YRAGDQICSECGLV 33 (309)
Q Consensus 6 ~~Cp~C~~~~~v~-D--------~~~G~~vC~~CG~V 33 (309)
..||.||....++ . +.+=.++|.+||..
T Consensus 73 ~~Cp~C~~~~a~~~q~q~rsade~~t~fy~C~~C~~~ 109 (122)
T 1twf_I 73 RECPKCHSRENVFFQSQQRRKDTSMVLFFVCLSCSHI 109 (122)
T ss_dssp CCCTTTCCCCEEEEECSSCCTTCCCCEEEEETTTCCE
T ss_pred CCCCCCCCCEEEEEEecCccCCCCceEEEEeCCCCCE
Confidence 5799999876443 2 12224799999975
No 398
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=50.88 E-value=21 Score=26.48 Aligned_cols=29 Identities=17% Similarity=0.180 Sum_probs=26.8
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHh
Q psy6534 260 DKRSQKEIGDIAGVAEVTIRQSYKLMYPH 288 (309)
Q Consensus 260 ~~~~~~~ia~~~~vs~~ti~~~~kei~~~ 288 (309)
-++++.+||+.++++.+|+.+..+.|.+.
T Consensus 42 ~~~t~~~la~~l~~s~~~vs~~l~~Le~~ 70 (144)
T 1lj9_A 42 PGIIQEKIAELIKVDRTTAARAIKRLEEQ 70 (144)
T ss_dssp TTEEHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred cCcCHHHHHHHHCCCHhHHHHHHHHHHHC
Confidence 37899999999999999999999999876
No 399
>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69
Probab=50.86 E-value=19 Score=26.08 Aligned_cols=30 Identities=10% Similarity=0.202 Sum_probs=27.3
Q ss_pred CCCCHHHHHHHh-CCCHHHHHHHHHHHHHhh
Q psy6534 260 DKRSQKEIGDIA-GVAEVTIRQSYKLMYPHA 289 (309)
Q Consensus 260 ~~~~~~~ia~~~-~vs~~ti~~~~kei~~~~ 289 (309)
-+.++.+|++.+ |++..|+.+..+.|.+.-
T Consensus 34 ~~~~~~eLa~~l~~is~~tvs~~L~~Le~~G 64 (112)
T 1z7u_A 34 GTKRNGELMRALDGITQRVLTDRLREMEKDG 64 (112)
T ss_dssp SCBCHHHHHHHSTTCCHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHhccCCHHHHHHHHHHHHHCC
Confidence 468999999999 999999999999998763
No 400
>3kz9_A SMCR; transcriptional regulator, quorum S DNA-binding, transcription regulation, transcription regula; HET: MSE; 2.10A {Vibrio vulnificus} PDB: 2pbx_A
Probab=50.84 E-value=19 Score=28.06 Aligned_cols=38 Identities=16% Similarity=0.233 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHhCCC-CCCHHHHHHHhCCCHHHHHHHHHH
Q psy6534 246 VAAAAIYMASQASSD-KRSQKEIGDIAGVAEVTIRQSYKL 284 (309)
Q Consensus 246 iaaAaiyla~~~~~~-~~~~~~ia~~~~vs~~ti~~~~ke 284 (309)
|..|++-+..+ .|+ ..|.++||+.+|||..|+-..|..
T Consensus 22 Il~aa~~l~~~-~G~~~~s~~~Ia~~agvs~~t~Y~~F~s 60 (206)
T 3kz9_A 22 LMEIALEVFAR-RGIGRGGHADIAEIAQVSVATVFNYFPT 60 (206)
T ss_dssp HHHHHHHHHHH-SCCSSCCHHHHHHHHTSCHHHHHHHCCS
T ss_pred HHHHHHHHHHh-cCcccccHHHHHHHhCCCHHHHHHHcCC
Confidence 55555555444 465 599999999999999999887743
No 401
>3ic7_A Putative transcriptional regulator; helix-turn-helix, structural genomics, PSI-2, protein struct initiative; 2.82A {Bacteroides thetaiotaomicron}
Probab=50.79 E-value=1.2 Score=33.84 Aligned_cols=30 Identities=23% Similarity=0.350 Sum_probs=25.1
Q ss_pred CCCC-CHHHHHHHhCCCHHHHHHHHHHHHHh
Q psy6534 259 SDKR-SQKEIGDIAGVAEVTIRQSYKLMYPH 288 (309)
Q Consensus 259 ~~~~-~~~~ia~~~~vs~~ti~~~~kei~~~ 288 (309)
|.++ +.+++|+.+|||..|++++|+.|...
T Consensus 32 G~~lPs~~~La~~~~vSr~tvr~Al~~L~~~ 62 (126)
T 3ic7_A 32 EGRIPSVREYASIVEVNANTVMRSYEYLQSQ 62 (126)
T ss_dssp TSEECCTTTTTTCC-CCSGGGHHHHHHHHTT
T ss_pred CCcCcCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 3456 78899999999999999999999864
No 402
>3dcf_A Transcriptional regulator of the TETR/ACRR family; YP_290855.1, structural genomics, joint center for structural genomics, JCSG; 2.50A {Thermobifida fusca YX}
Probab=50.77 E-value=20 Score=28.25 Aligned_cols=39 Identities=18% Similarity=0.205 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHhCCC-CCCHHHHHHHhCCCHHHHHHHHH
Q psy6534 244 ISVAAAAIYMASQASSD-KRSQKEIGDIAGVAEVTIRQSYK 283 (309)
Q Consensus 244 ~~iaaAaiyla~~~~~~-~~~~~~ia~~~~vs~~ti~~~~k 283 (309)
..|..|++=+..+ .|+ .+|.++||+.+||+..|+-+.|.
T Consensus 34 ~~Il~aa~~l~~~-~G~~~~tv~~Ia~~agvs~~t~Y~~F~ 73 (218)
T 3dcf_A 34 TQIIKVATELFRE-KGYYATSLDDIADRIGFTKPAIYYYFK 73 (218)
T ss_dssp HHHHHHHHHHHHH-TCTTTCCHHHHHHHHTCCHHHHHHHCS
T ss_pred HHHHHHHHHHHHH-cCcccCcHHHHHHHhCCCHHHHHHHcC
Confidence 3444555544443 464 69999999999999999987774
No 403
>3lhq_A Acrab operon repressor (TETR/ACRR family); structural genomics, IDP02616, csgid, DNA-binding, transcription, transcription regulation; 1.56A {Salmonella enterica subsp} PDB: 3bcg_A 2qop_A
Probab=50.61 E-value=21 Score=28.08 Aligned_cols=39 Identities=28% Similarity=0.275 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHhCCC-CCCHHHHHHHhCCCHHHHHHHHHH
Q psy6534 245 SVAAAAIYMASQASSD-KRSQKEIGDIAGVAEVTIRQSYKL 284 (309)
Q Consensus 245 ~iaaAaiyla~~~~~~-~~~~~~ia~~~~vs~~ti~~~~ke 284 (309)
.|..|++=+..+. |. .+|.++||+.+|||..|+-+.|..
T Consensus 18 ~Il~aa~~l~~~~-G~~~~ti~~Ia~~agvs~~t~Y~~F~s 57 (220)
T 3lhq_A 18 HILDVALRLFSQQ-GVSATSLAEIANAAGVTRGAIYWHFKN 57 (220)
T ss_dssp HHHHHHHHHHHHH-CSTTCCHHHHHHHHTCCHHHHHHHCSS
T ss_pred HHHHHHHHHHHHc-CcccCCHHHHHHHhCCCceeehhhcCC
Confidence 3444555444443 54 599999999999999999887743
No 404
>2jsc_A Transcriptional regulator RV1994C/MT2050; cadmium, transcriptional repressor, solution structure, STRU genomics; NMR {Mycobacterium tuberculosis}
Probab=50.44 E-value=11 Score=27.72 Aligned_cols=29 Identities=3% Similarity=0.040 Sum_probs=25.8
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHh
Q psy6534 260 DKRSQKEIGDIAGVAEVTIRQSYKLMYPH 288 (309)
Q Consensus 260 ~~~~~~~ia~~~~vs~~ti~~~~kei~~~ 288 (309)
-+.+..+||+.+|++.+|+.+..+.|.+.
T Consensus 33 ~~~~~~eLa~~lgis~stvs~~L~~L~~~ 61 (118)
T 2jsc_A 33 GVCYPGQLAAHLGLTRSNVSNHLSCLRGC 61 (118)
T ss_dssp TCCSTTTHHHHHSSCHHHHHHHHHHHTTT
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 35788999999999999999999999764
No 405
>3g5g_A Regulatory protein; transcriptional regulator, helix-turn-helix, restriction- modification, transcription regulator; 2.80A {Enterobacter SP} PDB: 3fya_A
Probab=50.33 E-value=12 Score=26.55 Aligned_cols=24 Identities=8% Similarity=0.095 Sum_probs=20.4
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHH
Q psy6534 260 DKRSQKEIGDIAGVAEVTIRQSYK 283 (309)
Q Consensus 260 ~~~~~~~ia~~~~vs~~ti~~~~k 283 (309)
..++|+++|+.+||+..||.+.-+
T Consensus 40 ~gltq~elA~~~gis~~~is~iE~ 63 (99)
T 3g5g_A 40 KGMTQEDLAYKSNLDRTYISGIER 63 (99)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHC
Confidence 467999999999999999987543
No 406
>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=50.15 E-value=14 Score=27.40 Aligned_cols=30 Identities=17% Similarity=0.349 Sum_probs=26.8
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHHHHh
Q psy6534 259 SDKRSQKEIGDIAGVAEVTIRQSYKLMYPH 288 (309)
Q Consensus 259 ~~~~~~~~ia~~~~vs~~ti~~~~kei~~~ 288 (309)
.-+.+..+||+.+|++.+|+.+..+.|.+.
T Consensus 54 ~~~~s~~eLa~~l~is~stvs~~L~~L~~~ 83 (122)
T 1u2w_A 54 DEELCVCDIANILGVTIANASHHLRTLYKQ 83 (122)
T ss_dssp SSCEEHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCCcCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 346899999999999999999999999854
No 407
>2zkz_A Transcriptional repressor PAGR; protein-DNA, HTH motif, dimer, DN binding, transcription regulation; 2.00A {Bacillus anthracis}
Probab=50.15 E-value=10 Score=26.95 Aligned_cols=29 Identities=17% Similarity=0.100 Sum_probs=26.4
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHh
Q psy6534 260 DKRSQKEIGDIAGVAEVTIRQSYKLMYPH 288 (309)
Q Consensus 260 ~~~~~~~ia~~~~vs~~ti~~~~kei~~~ 288 (309)
-+.+..|||+.+|++.+|+.+..+.|.+.
T Consensus 40 ~~~~~~ela~~l~is~stvs~hL~~L~~~ 68 (99)
T 2zkz_A 40 KALNVTQIIQILKLPQSTVSQHLCKMRGK 68 (99)
T ss_dssp SCEEHHHHHHHHTCCHHHHHHHHHHHBTT
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 46899999999999999999999999865
No 408
>2lk0_A RNA-binding protein 5; zinc finger; NMR {Homo sapiens} PDB: 2lk1_A*
Probab=50.11 E-value=7 Score=21.89 Aligned_cols=13 Identities=31% Similarity=0.751 Sum_probs=10.7
Q ss_pred CCCceecCCCCcc
Q psy6534 21 RAGDQICSECGLV 33 (309)
Q Consensus 21 ~~G~~vC~~CG~V 33 (309)
..|+..|..||.+
T Consensus 2 k~gDW~C~~C~~~ 14 (32)
T 2lk0_A 2 KFEDWLCNKCCLN 14 (32)
T ss_dssp CCSEEECTTTCCE
T ss_pred CCCCCCcCcCcCC
Confidence 4589999999876
No 409
>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}
Probab=50.09 E-value=7.9 Score=32.01 Aligned_cols=30 Identities=17% Similarity=0.271 Sum_probs=20.0
Q ss_pred CcccCCCCCCCCeeeeCCCCceecCCCCcccc
Q psy6534 4 NKVCCYEHPDAPLIEDYRAGDQICSECGLVVG 35 (309)
Q Consensus 4 ~~~~Cp~C~~~~~v~D~~~G~~vC~~CG~V~~ 35 (309)
....|+.|+.... .......+|..||.+..
T Consensus 9 ~~~~Cw~C~~~~~--~~~~~~~fC~~c~~~q~ 38 (207)
T 3bvo_A 9 NYPRCWNCGGPWG--PGREDRFFCPQCRALQA 38 (207)
T ss_dssp --CBCSSSCCBCC--SSCSCCCBCTTTCCBCC
T ss_pred CCCCCCCCCCCcc--cccccccccccccccCC
Confidence 3458999986411 12356899999998863
No 410
>2k9s_A Arabinose operon regulatory protein; activator, arabinose catabolism, carbohydrate metabolism, cytoplasm, DNA-binding, repressor, transcription; NMR {Escherichia coli}
Probab=49.93 E-value=32 Score=24.40 Aligned_cols=50 Identities=14% Similarity=0.209 Sum_probs=33.0
Q ss_pred HHHHHHHHHHhcCCCccHHHHHHHhcccHHHHHHHHHHHHHHhcccCCCCChHHHHHH
Q psy6534 153 ASACLYIACRQEGVPRTFKEICAVSKISKKEIGRCFKLILKALETSVDLITTGDFMSR 210 (309)
Q Consensus 153 aaAcly~acR~~~~~~tl~eia~~~~~~~~~i~~~~~~l~~~l~~~~~~~~p~~~i~~ 210 (309)
..++-|+--...+.++++.++|+.++++...|.+.++. .+|. .|..|+..
T Consensus 6 ~~~~~~i~~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~---~~G~-----s~~~~~~~ 55 (107)
T 2k9s_A 6 REACQYISDHLADSNFDIASVAQHVCLSPSRLSHLFRQ---QLGI-----SVLSWRED 55 (107)
T ss_dssp HHHHHHHHHTSSCSSCCHHHHHHHTTSCHHHHHHHHHH---HHSS-----CHHHHHHH
T ss_pred HHHHHHHHHHhccCCCCHHHHHHHHCCCHHHHHHHHHH---HHCc-----CHHHHHHH
Confidence 33444554333336889999999999999998777663 3443 35666654
No 411
>2rae_A Transcriptional regulator, ACRR family protein; TETR/ACRR family transcriptional regulator, structural genom 2, RHA08332, MCSG; 2.20A {Rhodococcus SP}
Probab=49.79 E-value=22 Score=27.94 Aligned_cols=41 Identities=15% Similarity=0.227 Sum_probs=30.1
Q ss_pred hHHHHHHHHHHHHHhCCC-CCCHHHHHHHhCCCHHHHHHHHHH
Q psy6534 243 PISVAAAAIYMASQASSD-KRSQKEIGDIAGVAEVTIRQSYKL 284 (309)
Q Consensus 243 P~~iaaAaiyla~~~~~~-~~~~~~ia~~~~vs~~ti~~~~ke 284 (309)
...|..|++-+..+ .|+ .+|.++||+.+||+..|+-..|+.
T Consensus 19 r~~Il~aa~~l~~~-~G~~~~ti~~Ia~~agvs~~t~Y~~F~s 60 (207)
T 2rae_A 19 QDRISTVGIELFTE-QGFDATSVDEVAEASGIARRTLFRYFPS 60 (207)
T ss_dssp HHHHHHHHHHHHHH-HCTTTSCHHHHHHHTTSCHHHHHHHCSS
T ss_pred HHHHHHHHHHHHHH-cCcccCCHHHHHHHhCCCcchHhhhCCC
Confidence 34455566655544 354 699999999999999999887754
No 412
>2crr_A Stromal membrane-associated protein SMAP1B; arfgap domain, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=49.77 E-value=3.2 Score=32.23 Aligned_cols=31 Identities=23% Similarity=0.320 Sum_probs=22.2
Q ss_pred CCcccCCCCCCCCeee-eCCCCceecCCCCccc
Q psy6534 3 INKVCCYEHPDAPLIE-DYRAGDQICSECGLVV 34 (309)
Q Consensus 3 ~~~~~Cp~C~~~~~v~-D~~~G~~vC~~CG~V~ 34 (309)
+|. .|-+||..+..+ ...-|..+|.+|.-|.
T Consensus 28 ~N~-~CaDCga~~P~WaS~n~GvfiC~~CsgiH 59 (141)
T 2crr_A 28 DNK-YCADCEAKGPRWASWNIGVFICIRCAGIH 59 (141)
T ss_dssp GGS-SCSSSCCSSCCSEETTTTEECCHHHHHHH
T ss_pred cCC-cCCCCCCCCCCeEEeccCeEEhhhhhHhH
Confidence 344 788888776543 4567888899887776
No 413
>3j21_e 50S ribosomal protein L37E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=49.74 E-value=6.2 Score=25.76 Aligned_cols=23 Identities=17% Similarity=0.522 Sum_probs=13.9
Q ss_pred ccCCCCCCCCeeeeCCCCceecCCCCc
Q psy6534 6 VCCYEHPDAPLIEDYRAGDQICSECGL 32 (309)
Q Consensus 6 ~~Cp~C~~~~~v~D~~~G~~vC~~CG~ 32 (309)
..|..||+...= --...|..||+
T Consensus 18 ~lCrRCG~~syH----~qK~~Ca~CGy 40 (62)
T 3j21_e 18 IRCRRCGRVSYN----VKKGYCAACGF 40 (62)
T ss_dssp CBCSSSCSBCEE----TTTTEETTTCT
T ss_pred eeecccCcchhc----cccccccccCC
Confidence 357777765431 13567777775
No 414
>3col_A Putative transcription regulator; structural genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 2.10A {Lactobacillus plantarum WCFS1}
Probab=49.59 E-value=17 Score=28.16 Aligned_cols=39 Identities=13% Similarity=0.224 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHhCCC-CCCHHHHHHHhCCCHHHHHHHHH
Q psy6534 244 ISVAAAAIYMASQASSD-KRSQKEIGDIAGVAEVTIRQSYK 283 (309)
Q Consensus 244 ~~iaaAaiyla~~~~~~-~~~~~~ia~~~~vs~~ti~~~~k 283 (309)
..|..|++-+..+. |. .+|.++||+.+|||..|+-..|+
T Consensus 13 ~~Il~aa~~l~~~~-G~~~~ti~~Ia~~agvs~~t~Y~~F~ 52 (196)
T 3col_A 13 VKIQDAVAAIILAE-GPAGVSTTKVAKRVGIAQSNVYLYFK 52 (196)
T ss_dssp HHHHHHHHHHHHHH-CGGGCCHHHHHHHHTSCHHHHHTTCS
T ss_pred HHHHHHHHHHHHhc-CcccCCHHHHHHHhCCcHHHHHHHhC
Confidence 44555666555553 54 69999999999999999977664
No 415
>3rd3_A Probable transcriptional regulator; 2.40A {Pseudomonas aeruginosa}
Probab=49.58 E-value=24 Score=27.28 Aligned_cols=39 Identities=13% Similarity=0.069 Sum_probs=28.4
Q ss_pred hHHHHHHHHHHHHHhCCC-CCCHHHHHHHhCCCHHHHHHHH
Q psy6534 243 PISVAAAAIYMASQASSD-KRSQKEIGDIAGVAEVTIRQSY 282 (309)
Q Consensus 243 P~~iaaAaiyla~~~~~~-~~~~~~ia~~~~vs~~ti~~~~ 282 (309)
...|..|++=+..+ .|. ..|.++||+.+|||..||-+.|
T Consensus 12 r~~Il~aa~~lf~~-~G~~~~t~~~IA~~agvs~~tlY~~F 51 (197)
T 3rd3_A 12 RQHLLDTGYRIMAV-KGFSGVGLNEILQSAGVPKGSFYHYF 51 (197)
T ss_dssp HHHHHHHHHHHHHH-HCSTTCCHHHHHHHHTCCHHHHTTTC
T ss_pred HHHHHHHHHHHHHH-CCcccCCHHHHHHHhCCChhhHHHHc
Confidence 34455565555544 354 6999999999999999986655
No 416
>3fym_A Putative uncharacterized protein; HTH DNA binding, DNA binding protein; 1.00A {Staphylococcus aureus subsp}
Probab=49.54 E-value=34 Score=25.52 Aligned_cols=51 Identities=14% Similarity=0.181 Sum_probs=35.2
Q ss_pred cCCCccHHHHHHHhcccHHHHHHHHHHHHHHhcccCCCCC---hHHHHHHHHhhCCCCHH
Q psy6534 164 EGVPRTFKEICAVSKISKKEIGRCFKLILKALETSVDLIT---TGDFMSRFCSNLSLPNM 220 (309)
Q Consensus 164 ~~~~~tl~eia~~~~~~~~~i~~~~~~l~~~l~~~~~~~~---p~~~i~~~~~~L~l~~~ 220 (309)
.....|+.|+|+.++++...|.+..+ |...+..+ ...++.++++.||++.+
T Consensus 13 ~~~gltq~elA~~~gis~~~is~iE~------g~~~~~~~~~~~~~~l~~ia~~L~v~~~ 66 (130)
T 3fym_A 13 ERLGMTLTELEQRTGIKREMLVHIEN------NEFDQLPNKNYSEGFIRKYASVVNIEPN 66 (130)
T ss_dssp HHTTCCHHHHHHHHCCCHHHHHHHHT------TCGGGSSSGGGHHHHHHHHHHHTTCCHH
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHHHC------CCCCCCchhhhHHHHHHHHHHHhCCCHH
Confidence 34578999999999999888776554 22111111 12678889999998764
No 417
>2fq4_A Transcriptional regulator, TETR family; DNA-binding protein, bacillu structural genomics, PSI, protein structure initiative; 1.79A {Bacillus cereus} SCOP: a.4.1.9 a.121.1.1
Probab=49.45 E-value=23 Score=27.60 Aligned_cols=38 Identities=18% Similarity=0.187 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHhCCC-CCCHHHHHHHhCCCHHHHHHHHH
Q psy6534 245 SVAAAAIYMASQASSD-KRSQKEIGDIAGVAEVTIRQSYK 283 (309)
Q Consensus 245 ~iaaAaiyla~~~~~~-~~~~~~ia~~~~vs~~ti~~~~k 283 (309)
.|..||+-+-.+ .|+ ..|.++||+.+|||..||=..|+
T Consensus 16 ~Il~aA~~lf~e-~G~~~~t~~~IA~~agvsk~tlY~~F~ 54 (192)
T 2fq4_A 16 AILSASYELLLE-SGFKAVTVDKIAERAKVSKATIYKWWP 54 (192)
T ss_dssp HHHHHHHHHHHH-HCTTTCCHHHHHHHHTCCHHHHHHHCS
T ss_pred HHHHHHHHHHHH-cCcccccHHHHHHHcCCCHHHHHHHCC
Confidence 344455544433 354 68999999999999999988884
No 418
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=49.34 E-value=19 Score=26.75 Aligned_cols=29 Identities=21% Similarity=0.252 Sum_probs=26.8
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHh
Q psy6534 260 DKRSQKEIGDIAGVAEVTIRQSYKLMYPH 288 (309)
Q Consensus 260 ~~~~~~~ia~~~~vs~~ti~~~~kei~~~ 288 (309)
-++++.+||+.++++..|+.+..+.|.+.
T Consensus 46 ~~~~~~~la~~l~~s~~tvs~~l~~L~~~ 74 (145)
T 2a61_A 46 GPKRPGELSVLLGVAKSTVTGLVKRLEAD 74 (145)
T ss_dssp CCBCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHCCCchhHHHHHHHHHHC
Confidence 46899999999999999999999999875
No 419
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=49.28 E-value=17 Score=27.74 Aligned_cols=29 Identities=17% Similarity=0.164 Sum_probs=26.8
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHh
Q psy6534 260 DKRSQKEIGDIAGVAEVTIRQSYKLMYPH 288 (309)
Q Consensus 260 ~~~~~~~ia~~~~vs~~ti~~~~kei~~~ 288 (309)
.++++.+||+.+|++..|+.+..+.|.+.
T Consensus 65 ~~~t~~ela~~l~is~~tvs~~l~~Le~~ 93 (162)
T 3cjn_A 65 DGLPIGTLGIFAVVEQSTLSRALDGLQAD 93 (162)
T ss_dssp CSEEHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHCCChhHHHHHHHHHHHC
Confidence 47899999999999999999999999876
No 420
>2ds5_A CLPX, ATP-dependent CLP protease ATP-binding subunit CLPX; treble cleft zinc finger, metal binding protein, protein binding; HET: PG4; 1.50A {Escherichia coli} SCOP: g.39.1.11 PDB: 2ds6_A 2ds8_A 2ds7_A
Probab=49.16 E-value=6.4 Score=24.75 Aligned_cols=24 Identities=29% Similarity=0.538 Sum_probs=15.9
Q ss_pred cccCCCCCCCC-----eeeeCCCCceecCCC
Q psy6534 5 KVCCYEHPDAP-----LIEDYRAGDQICSEC 30 (309)
Q Consensus 5 ~~~Cp~C~~~~-----~v~D~~~G~~vC~~C 30 (309)
...|..||.+. +|.- .|..+|.+|
T Consensus 11 ~~~CSFCGk~~~ev~~LIaG--pgv~IC~eC 39 (51)
T 2ds5_A 11 LLYCSFCGKSQHEVRKLIAG--PSVYICDEC 39 (51)
T ss_dssp CCBCTTTCCBTTTSSCEEEC--SSCEEEHHH
T ss_pred CcEecCCCCCHHHhcccCCC--CCCEehHHH
Confidence 35799998542 4443 367888887
No 421
>3dpj_A Transcription regulator, TETR family; APC88616, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MES; 1.90A {Silicibacter pomeroyi}
Probab=49.15 E-value=24 Score=27.35 Aligned_cols=38 Identities=18% Similarity=0.174 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHhCCC-CCCHHHHHHHhCCCHHHHHHHHH
Q psy6534 245 SVAAAAIYMASQASSD-KRSQKEIGDIAGVAEVTIRQSYK 283 (309)
Q Consensus 245 ~iaaAaiyla~~~~~~-~~~~~~ia~~~~vs~~ti~~~~k 283 (309)
.|..|++-+..+ .|+ ..|.++||+.+||+..|+-..|.
T Consensus 12 ~Il~aA~~l~~~-~G~~~~t~~~IA~~Agvs~~tly~~F~ 50 (194)
T 3dpj_A 12 QIVAAADELFYR-QGFAQTSFVDISAAVGISRGNFYYHFK 50 (194)
T ss_dssp HHHHHHHHHHHH-HCTTTCCHHHHHHHHTCCHHHHHHHCS
T ss_pred HHHHHHHHHHHH-cCcccCCHHHHHHHHCCChHHHHHHcC
Confidence 344455544444 354 68999999999999999988774
No 422
>2v57_A TETR family transcriptional repressor LFRR; DNA-binding, transcription regulation; HET: PRL; 1.90A {Mycobacterium smegmatis} PDB: 2wgb_A
Probab=49.10 E-value=14 Score=28.57 Aligned_cols=38 Identities=21% Similarity=0.333 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHhCCCCCCHHHHHHHhCCCHHHHHHHHH
Q psy6534 244 ISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283 (309)
Q Consensus 244 ~~iaaAaiyla~~~~~~~~~~~~ia~~~~vs~~ti~~~~k 283 (309)
..|..|++=+..+. ...|.++||+.+||+..|+-..|+
T Consensus 17 ~~Il~aA~~lf~~~--~~~t~~~Ia~~agvs~~t~Y~~F~ 54 (190)
T 2v57_A 17 RAILDAAMLVLADH--PTAALGDIAAAAGVGRSTVHRYYP 54 (190)
T ss_dssp HHHHHHHHHHHTTC--TTCCHHHHHHHHTCCHHHHHHHCS
T ss_pred HHHHHHHHHHHHHc--CCCCHHHHHHHhCCCHHHHHHHcC
Confidence 33444555444443 779999999999999999987774
No 423
>2yve_A Transcriptional regulator; helix-turn-helix, TETR-family; HET: MBT; 1.40A {Corynebacterium glutamicum} PDB: 1v7b_A 2zoy_A 2yvh_A 2dh0_A* 2zoz_A*
Probab=48.96 E-value=22 Score=27.66 Aligned_cols=40 Identities=13% Similarity=0.112 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHhCCC-CCCHHHHHHHhCCCHHHHHHHHHH
Q psy6534 244 ISVAAAAIYMASQASSD-KRSQKEIGDIAGVAEVTIRQSYKL 284 (309)
Q Consensus 244 ~~iaaAaiyla~~~~~~-~~~~~~ia~~~~vs~~ti~~~~ke 284 (309)
..|..|++=+..+ .|+ .+|.++||+.+||+..|+-..|..
T Consensus 7 ~~Il~aa~~l~~~-~G~~~~t~~~Ia~~agvs~~t~Y~~F~s 47 (185)
T 2yve_A 7 EMILRTAIDYIGE-YSLETLSYDSLAEATGLSKSGLIYHFPS 47 (185)
T ss_dssp HHHHHHHHHHHHH-SCSTTCCHHHHHHHHCCCHHHHHHHCSS
T ss_pred HHHHHHHHHHHHH-cChhhccHHHHHHHhCCChHHHHHhCcC
Confidence 3455555544444 454 699999999999999999888743
No 424
>3dn7_A Cyclic nucleotide binding regulatory protein; structural genomics, APC88869, cyclic nucleotide binding REG protein, PSI-2; 1.80A {Cytophaga hutchinsonii}
Probab=48.85 E-value=3.6 Score=32.68 Aligned_cols=27 Identities=11% Similarity=0.071 Sum_probs=0.0
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHH
Q psy6534 260 DKRSQKEIGDIAGVAEVTIRQSYKLMY 286 (309)
Q Consensus 260 ~~~~~~~ia~~~~vs~~ti~~~~kei~ 286 (309)
.++|+++||+.+|+++.|+.+..++|.
T Consensus 167 ~~~t~~~iA~~lG~sretlsR~l~~l~ 193 (194)
T 3dn7_A 167 QRVPQYLLASYLGFTPEYLSEIRKKYI 193 (194)
T ss_dssp ---------------------------
T ss_pred HHCCHHHHHHHhCCCHHHHHHHHHhhc
Confidence 578999999999999999999988774
No 425
>3vpr_A Transcriptional regulator, TETR family; all alpha, helix-turn-helix, transcriptional repressor, DNA protein; 2.27A {Thermus thermophilus}
Probab=48.82 E-value=26 Score=27.12 Aligned_cols=37 Identities=8% Similarity=0.242 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHhCCC-CCCHHHHHHHhCCCHHHHHHHHH
Q psy6534 246 VAAAAIYMASQASSD-KRSQKEIGDIAGVAEVTIRQSYK 283 (309)
Q Consensus 246 iaaAaiyla~~~~~~-~~~~~~ia~~~~vs~~ti~~~~k 283 (309)
|..|++=+-++ .|+ ..|.++||+.+|||..||=..|+
T Consensus 8 Il~aA~~lf~~-~G~~~~s~~~IA~~agvsk~t~Y~~F~ 45 (190)
T 3vpr_A 8 ILEEAAKLFTE-KGYEATSVQDLAQALGLSKAALYHHFG 45 (190)
T ss_dssp HHHHHHHHHHH-HCSTTCCHHHHHHHHTCCHHHHHHHHS
T ss_pred HHHHHHHHHHH-hCcccCCHHHHHHHhCCCHHHHHHHcC
Confidence 44444433333 254 58999999999999999988773
No 426
>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}
Probab=48.80 E-value=15 Score=28.39 Aligned_cols=30 Identities=10% Similarity=-0.004 Sum_probs=24.5
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHHHHh
Q psy6534 259 SDKRSQKEIGDIAGVAEVTIRQSYKLMYPH 288 (309)
Q Consensus 259 ~~~~~~~~ia~~~~vs~~ti~~~~kei~~~ 288 (309)
+.++++.+||+.++++..|+.+..+.|.+.
T Consensus 60 ~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~ 89 (168)
T 3u2r_A 60 PEGMATLQIADRLISRAPDITRLIDRLDDR 89 (168)
T ss_dssp TSCEEHHHHHHHC---CTHHHHHHHHHHHT
T ss_pred CCCcCHHHHHHHHCCChhhHHHHHHHHHHC
Confidence 467999999999999999999999999875
No 427
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=48.73 E-value=21 Score=25.04 Aligned_cols=31 Identities=19% Similarity=0.178 Sum_probs=27.7
Q ss_pred ccHHHHHHHhcccHHHHHHHHHHHHHHhccc
Q psy6534 168 RTFKEICAVSKISKKEIGRCFKLILKALETS 198 (309)
Q Consensus 168 ~tl~eia~~~~~~~~~i~~~~~~l~~~l~~~ 198 (309)
.+.+|||+.++++...+.....++.+.|+..
T Consensus 43 ~s~~eIA~~l~is~~tV~~~l~r~~~kL~~~ 73 (95)
T 3c57_A 43 LTNKQIADRMFLAEKTVKNYVSRLLAKLGME 73 (95)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHHHHHHTCC
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHHHHHcCC
Confidence 4779999999999999999999999988864
No 428
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=48.73 E-value=19 Score=26.09 Aligned_cols=28 Identities=7% Similarity=-0.104 Sum_probs=23.7
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHHh
Q psy6534 261 KRSQKEIGDIAGVAEVTIRQSYKLMYPH 288 (309)
Q Consensus 261 ~~~~~~ia~~~~vs~~ti~~~~kei~~~ 288 (309)
..+..+||..+|++..||.+-.+...+.
T Consensus 33 g~s~~~ia~~lgis~~Tv~~w~~~~~~~ 60 (128)
T 1pdn_C 33 GIRPCVISRQLRVSHGCVSKILNRYQET 60 (128)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHhh
Confidence 4689999999999999998887776554
No 429
>1x57_A Endothelial differentiation-related factor 1; HMBF1alpha, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.35.1.12
Probab=48.70 E-value=21 Score=24.42 Aligned_cols=25 Identities=16% Similarity=0.080 Sum_probs=21.0
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHH
Q psy6534 259 SDKRSQKEIGDIAGVAEVTIRQSYK 283 (309)
Q Consensus 259 ~~~~~~~~ia~~~~vs~~ti~~~~k 283 (309)
...+++.++|+.+|++..||.+..+
T Consensus 24 ~~glsq~~lA~~~gis~~~is~~e~ 48 (91)
T 1x57_A 24 SKGLTQKDLATKINEKPQVIADYES 48 (91)
T ss_dssp TTTCCHHHHHHHHTSCHHHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 3568999999999999999977554
No 430
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=48.61 E-value=20 Score=25.02 Aligned_cols=30 Identities=7% Similarity=0.112 Sum_probs=26.5
Q ss_pred CCCCCHHHH----HHHhCCCHHHHHHHHHHHHHh
Q psy6534 259 SDKRSQKEI----GDIAGVAEVTIRQSYKLMYPH 288 (309)
Q Consensus 259 ~~~~~~~~i----a~~~~vs~~ti~~~~kei~~~ 288 (309)
..+.++.+| |+.++++..|+.+..+.|.+.
T Consensus 20 ~~~~~~~el~~~la~~l~is~~tvs~~l~~Le~~ 53 (99)
T 1tbx_A 20 NEGIATYDLYKKVNAEFPMSTATFYDAKKFLIQE 53 (99)
T ss_dssp CTTCBHHHHHHHHHTTSCCCHHHHHHHHHHHHHT
T ss_pred cCCcCHHHHHHHHHHHcCCCHHHHHHHHHHHHHC
Confidence 356899999 888999999999999999875
No 431
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=48.53 E-value=47 Score=23.47 Aligned_cols=41 Identities=22% Similarity=0.504 Sum_probs=33.8
Q ss_pred HHHHHHhcCC-CccHHHHHHHh-cccHHHHHHHHHHHHHHhcc
Q psy6534 157 LYIACRQEGV-PRTFKEICAVS-KISKKEIGRCFKLILKALET 197 (309)
Q Consensus 157 ly~acR~~~~-~~tl~eia~~~-~~~~~~i~~~~~~l~~~l~~ 197 (309)
+..+|++.|- +.++..||..+ +-+..++...|..|.+.+..
T Consensus 44 IL~~cQ~~G~s~~tFa~iA~~L~Nks~nqV~~RFq~Lm~Lf~~ 86 (95)
T 1ug2_A 44 ILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELMQLFHT 86 (95)
T ss_dssp HHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCChhHHHHHHHHHccCCHHHHHHHHHHHHHHHHH
Confidence 5677888875 78999999998 58899999999988887754
No 432
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=48.41 E-value=23 Score=22.64 Aligned_cols=31 Identities=16% Similarity=0.065 Sum_probs=25.8
Q ss_pred CccHHHHHHHhcccHHHHHHHHHHHHHHhcc
Q psy6534 167 PRTFKEICAVSKISKKEIGRCFKLILKALET 197 (309)
Q Consensus 167 ~~tl~eia~~~~~~~~~i~~~~~~l~~~l~~ 197 (309)
..+..|||+.++++...+.+...+..+.|..
T Consensus 31 g~s~~eIA~~lgis~~tv~~~~~ra~~~l~~ 61 (70)
T 2o8x_A 31 GLSYADAAAVCGCPVGTIRSRVARARDALLA 61 (70)
T ss_dssp CCCHHHHHHHHTSCHHHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 3688999999999999988888777776654
No 433
>3kkc_A TETR family transcriptional regulator; APC20805, structural genomics, PSI-2, protein structure initiative; 2.50A {Streptococcus agalactiae 2603V}
Probab=48.40 E-value=14 Score=28.19 Aligned_cols=37 Identities=19% Similarity=0.256 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHhCCC-CCCHHHHHHHhCCCHHHHHHHHH
Q psy6534 246 VAAAAIYMASQASSD-KRSQKEIGDIAGVAEVTIRQSYK 283 (309)
Q Consensus 246 iaaAaiyla~~~~~~-~~~~~~ia~~~~vs~~ti~~~~k 283 (309)
|..|++=+..+ .|. .+|.++||+.+||+..|+=+.|+
T Consensus 17 Il~aa~~l~~~-~G~~~~tv~~Ia~~agvs~~t~Y~~F~ 54 (177)
T 3kkc_A 17 IYNAFISLLQE-NDYSKITVQDVIGLANVGRSTFYSHYE 54 (177)
T ss_dssp HHHHHHHHTTT-SCTTTCCHHHHHHHHCCCHHHHTTTCS
T ss_pred HHHHHHHHHHh-CChhHhhHHHHHHHhCCcHhhHHHHcC
Confidence 34444433333 354 78999999999999999976663
No 434
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=48.33 E-value=79 Score=23.24 Aligned_cols=30 Identities=3% Similarity=0.041 Sum_probs=27.6
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHHHHh
Q psy6534 259 SDKRSQKEIGDIAGVAEVTIRQSYKLMYPH 288 (309)
Q Consensus 259 ~~~~~~~~ia~~~~vs~~ti~~~~kei~~~ 288 (309)
+.++++.+||+.+|++..|+.+..+.|.+.
T Consensus 48 ~~~~~~~~la~~l~i~~~~vs~~l~~Le~~ 77 (147)
T 2hr3_A 48 GGDVTPSELAAAERMRSSNLAALLRELERG 77 (147)
T ss_dssp TSCBCHHHHHHHTTCCHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHhCCChhhHHHHHHHHHHC
Confidence 457999999999999999999999999876
No 435
>3mn2_A Probable ARAC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=48.23 E-value=41 Score=23.76 Aligned_cols=48 Identities=23% Similarity=0.269 Sum_probs=32.5
Q ss_pred HHHHHHHHHhcCCCccHHHHHHHhcccHHHHHHHHHHHHHHhcccCCCCChHHHHHH
Q psy6534 154 SACLYIACRQEGVPRTFKEICAVSKISKKEIGRCFKLILKALETSVDLITTGDFMSR 210 (309)
Q Consensus 154 aAcly~acR~~~~~~tl~eia~~~~~~~~~i~~~~~~l~~~l~~~~~~~~p~~~i~~ 210 (309)
.+.-|+.-.. ..++++.++|+.++++...|.+.++. .+|. .|..|+..
T Consensus 6 ~~~~~i~~~~-~~~~~~~~lA~~~~~s~~~l~r~fk~---~~G~-----s~~~~~~~ 53 (108)
T 3mn2_A 6 QVEEYIEANW-MRPITIEKLTALTGISSRGIFKAFQR---SRGY-----SPMAFAKR 53 (108)
T ss_dssp HHHHHHHHHT-TSCCCHHHHHHHHTCCHHHHHHHHHH---HTSS-----CHHHHHHH
T ss_pred HHHHHHHHcc-cCCCCHHHHHHHHCCCHHHHHHHHHH---HhCc-----CHHHHHHH
Confidence 3444554333 45799999999999999998777763 3343 45666664
No 436
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=48.22 E-value=28 Score=27.98 Aligned_cols=38 Identities=16% Similarity=0.159 Sum_probs=29.4
Q ss_pred HHHHHHHhcCCCccHHHHHHHhcccHHHHHHHHHHHHH
Q psy6534 156 CLYIACRQEGVPRTFKEICAVSKISKKEIGRCFKLILK 193 (309)
Q Consensus 156 cly~acR~~~~~~tl~eia~~~~~~~~~i~~~~~~l~~ 193 (309)
.+.-..+.++.|.|.+|||+.++++...+.+.++.|.+
T Consensus 13 ~I~~~~~~~g~~~s~~eia~~lgl~~~tv~~~l~~Le~ 50 (196)
T 3k2z_A 13 FIEEFIEKNGYPPSVREIARRFRITPRGALLHLIALEK 50 (196)
T ss_dssp HHHHHHHHHSSCCCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCHHHHHHHcCCCcHHHHHHHHHHHH
Confidence 34444567899999999999999998877666666654
No 437
>3bni_A Putative TETR-family transcriptional regulator; structural genomics, APC7281; HET: PG4; 2.30A {Streptomyces coelicolor A3}
Probab=48.17 E-value=24 Score=28.56 Aligned_cols=39 Identities=10% Similarity=0.031 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHhCCC-CCCHHHHHHHhCCCHHHHHHHHHH
Q psy6534 245 SVAAAAIYMASQASSD-KRSQKEIGDIAGVAEVTIRQSYKL 284 (309)
Q Consensus 245 ~iaaAaiyla~~~~~~-~~~~~~ia~~~~vs~~ti~~~~ke 284 (309)
.|..|++=+..+ .|+ .+|.++||+.+||+..||-..|+.
T Consensus 47 ~Il~aA~~l~~~-~G~~~~tv~~IA~~AGvs~~t~Y~~F~s 86 (229)
T 3bni_A 47 RILDACADLLDE-VGYDALSTRAVALRADVPIGSVYRFFGN 86 (229)
T ss_dssp HHHHHHHHHHHH-HCTTTCCHHHHHHHHTCCHHHHHHHCSS
T ss_pred HHHHHHHHHHHh-cChhhccHHHHHHHHCCCchhHHHHcCC
Confidence 455555544444 354 599999999999999999877743
No 438
>3gzi_A Transcriptional regulator, TETR family; TETR family transcriptional regulator, structural genomics, center for structural genomics, JCSG; 2.05A {Shewanella loihica pv-4}
Probab=48.17 E-value=23 Score=27.98 Aligned_cols=37 Identities=24% Similarity=0.229 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHhCCC-CCCHHHHHHHhCCCHHHHHHHHH
Q psy6534 246 VAAAAIYMASQASSD-KRSQKEIGDIAGVAEVTIRQSYK 283 (309)
Q Consensus 246 iaaAaiyla~~~~~~-~~~~~~ia~~~~vs~~ti~~~~k 283 (309)
|..|++-+..+ .|+ ..|.++||+.+|||..||-+.|+
T Consensus 22 Il~aA~~l~~~-~G~~~~t~~~IA~~agvs~~t~Y~~F~ 59 (218)
T 3gzi_A 22 LILAARNLFIE-RPYAQVSIREIASLAGTDPGLIRYYFG 59 (218)
T ss_dssp HHHHHHHHHHT-SCCSCCCHHHHHHHHTSCTHHHHHHHS
T ss_pred HHHHHHHHHHH-CCCCcCCHHHHHHHhCCCHHHHHHHcC
Confidence 44444444433 465 58999999999999999988884
No 439
>4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor}
Probab=48.13 E-value=13 Score=28.26 Aligned_cols=30 Identities=13% Similarity=0.165 Sum_probs=27.0
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHHHHh
Q psy6534 259 SDKRSQKEIGDIAGVAEVTIRQSYKLMYPH 288 (309)
Q Consensus 259 ~~~~~~~~ia~~~~vs~~ti~~~~kei~~~ 288 (309)
+-++++.+||+.++++.+|+.+..+.|.+.
T Consensus 49 ~~~~t~~eLa~~l~~~~~tvs~~v~~Le~~ 78 (147)
T 4b8x_A 49 SGELPMSKIGERLMVHPTSVTNTVDRLVRS 78 (147)
T ss_dssp GGEEEHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCCcCHHHHHHHHCCCHHHHHHHHHHHHhC
Confidence 346899999999999999999999999875
No 440
>2d6y_A Putative TETR family regulatory protein; helix-turn-helix, gene regulation; HET: TLA; 2.30A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=48.11 E-value=33 Score=27.05 Aligned_cols=39 Identities=15% Similarity=0.047 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHhCCC-CCCHHHHHHHhCCCHHHHHHHHH
Q psy6534 244 ISVAAAAIYMASQASSD-KRSQKEIGDIAGVAEVTIRQSYK 283 (309)
Q Consensus 244 ~~iaaAaiyla~~~~~~-~~~~~~ia~~~~vs~~ti~~~~k 283 (309)
..|..||+=+-++ .|+ ..|.++||+.+|||..||=..|+
T Consensus 11 ~~Il~aA~~lf~~-~G~~~~s~~~IA~~aGvs~~tiY~~F~ 50 (202)
T 2d6y_A 11 ARIFEAAVAEFAR-HGIAGARIDRIAAEARANKQLIYAYYG 50 (202)
T ss_dssp HHHHHHHHHHHHH-HTTTSCCHHHHHHHHTCCHHHHHHHHS
T ss_pred HHHHHHHHHHHHH-cCcccCCHHHHHHHhCCCHHHHHHHcC
Confidence 3444455544443 354 78999999999999999988884
No 441
>3cng_A Nudix hydrolase; structural genomics, APC7497, PSI-2, protei structure initiative; 2.00A {Nitrosomonas europaea atcc 19718}
Probab=48.10 E-value=11 Score=30.19 Aligned_cols=29 Identities=14% Similarity=0.299 Sum_probs=19.6
Q ss_pred cccCCCCCCCCeeeeC---CCCceecCCCCcc
Q psy6534 5 KVCCYEHPDAPLIEDY---RAGDQICSECGLV 33 (309)
Q Consensus 5 ~~~Cp~C~~~~~v~D~---~~G~~vC~~CG~V 33 (309)
...||.||....+..+ ...-.+|..||.+
T Consensus 3 ~~~C~~CG~~~~~~~~~G~~~~~~~~~~~~~~ 34 (189)
T 3cng_A 3 MKFCSQCGGEVILRIPEGDTLPRYICPKCHTI 34 (189)
T ss_dssp CCBCTTTCCBCEEECCTTCSSCEEEETTTTEE
T ss_pred cccCchhCCccccccccCCCCcceECCCCCCc
Confidence 4579999987655432 1225699999943
No 442
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=48.01 E-value=47 Score=27.24 Aligned_cols=29 Identities=14% Similarity=0.319 Sum_probs=26.7
Q ss_pred CCccHHHHHHHhcccHHHHHHHHHHHHHH
Q psy6534 166 VPRTFKEICAVSKISKKEIGRCFKLILKA 194 (309)
Q Consensus 166 ~~~tl~eia~~~~~~~~~i~~~~~~l~~~ 194 (309)
.|.|..+||+.+|++...+.+.++++.+.
T Consensus 176 ~~~t~~~iA~~lG~sr~tvsR~l~~L~~~ 204 (250)
T 3e6c_C 176 MPLSQKSIGEITGVHHVTVSRVLASLKRE 204 (250)
T ss_dssp CCCCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHhCCcHHHHHHHHHHHHHC
Confidence 57899999999999999999999999874
No 443
>2l49_A C protein; P2 bacteriophage, P2 C, direct repeats, DNA-binding protein, binding protein; NMR {Enterobacteria phage P2} PDB: 2xcj_A
Probab=47.95 E-value=14 Score=25.75 Aligned_cols=22 Identities=23% Similarity=0.342 Sum_probs=19.3
Q ss_pred CCCCHHHHHHHhCCCHHHHHHH
Q psy6534 260 DKRSQKEIGDIAGVAEVTIRQS 281 (309)
Q Consensus 260 ~~~~~~~ia~~~~vs~~ti~~~ 281 (309)
..+++.++|+.+|++..||.+.
T Consensus 16 ~gltq~~lA~~~gis~~~is~~ 37 (99)
T 2l49_A 16 EYLSRQQLADLTGVPYGTLSYY 37 (99)
T ss_dssp TTCCHHHHHHHHCCCHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHH
Confidence 3579999999999999999874
No 444
>3b81_A Transcriptional regulator, ACRR family; NP_350189.1, predicted DNA-binding transcriptional regulator TETR/ACRR family; 2.10A {Clostridium acetobutylicum atcc 824}
Probab=47.84 E-value=26 Score=27.26 Aligned_cols=38 Identities=8% Similarity=0.035 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHhCCC-CCCHHHHHHHhCCCHHHHHHHH
Q psy6534 244 ISVAAAAIYMASQASSD-KRSQKEIGDIAGVAEVTIRQSY 282 (309)
Q Consensus 244 ~~iaaAaiyla~~~~~~-~~~~~~ia~~~~vs~~ti~~~~ 282 (309)
..|..|++=+..+ .|. ..|.++||+.+|||..|+=..|
T Consensus 14 ~~Il~aA~~lf~~-~G~~~~s~~~Ia~~agvs~~t~Y~~F 52 (203)
T 3b81_A 14 TELANKIWDIFIA-NGYENTTLAFIINKLGISKGALYHYF 52 (203)
T ss_dssp HHHHHHHHHHHHH-HCSTTCCHHHHHHHHTCCHHHHHTTC
T ss_pred HHHHHHHHHHHHH-cCcccCcHHHHHHHhCCCchhHHHHc
Confidence 3455555544444 354 6999999999999999987655
No 445
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=47.82 E-value=19 Score=27.18 Aligned_cols=30 Identities=27% Similarity=0.317 Sum_probs=27.2
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHHHHh
Q psy6534 259 SDKRSQKEIGDIAGVAEVTIRQSYKLMYPH 288 (309)
Q Consensus 259 ~~~~~~~~ia~~~~vs~~ti~~~~kei~~~ 288 (309)
+.++++.+||+.++++..|+.+..+.|.+.
T Consensus 59 ~~~~t~~ela~~l~~s~~tvs~~l~~Le~~ 88 (153)
T 2pex_A 59 TDERSVSEIGERLYLDSATLTPLLKRLQAA 88 (153)
T ss_dssp SCSEEHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCCcCHHHHHHHhCCCcccHHHHHHHHHHC
Confidence 346899999999999999999999999876
No 446
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=47.70 E-value=23 Score=27.12 Aligned_cols=29 Identities=3% Similarity=0.052 Sum_probs=26.8
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHh
Q psy6534 260 DKRSQKEIGDIAGVAEVTIRQSYKLMYPH 288 (309)
Q Consensus 260 ~~~~~~~ia~~~~vs~~ti~~~~kei~~~ 288 (309)
-++++.+||+.++++.+|+.+..+.|.+.
T Consensus 59 ~~~t~~eLa~~l~~~~~tvs~~l~~Le~~ 87 (162)
T 3k0l_A 59 PNLSNAKLAERSFIKPQSANKILQDLLAN 87 (162)
T ss_dssp TTCCHHHHHHHHTSCGGGHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 37999999999999999999999999875
No 447
>2ao9_A Phage protein; structural genomics, nine-fold NCS., PSI, protein structure initiative, midwest center for structural genomics, MCSG, U function; 1.90A {Bacillus cereus} SCOP: a.4.1.17
Probab=47.69 E-value=29 Score=27.16 Aligned_cols=20 Identities=30% Similarity=0.546 Sum_probs=18.6
Q ss_pred CCCHHHHHHHhCCCHHHHHH
Q psy6534 261 KRSQKEIGDIAGVAEVTIRQ 280 (309)
Q Consensus 261 ~~~~~~ia~~~~vs~~ti~~ 280 (309)
..|+.+||+.+||+.+|+.+
T Consensus 48 ~lTv~eIA~~LGIS~~TLyr 67 (155)
T 2ao9_A 48 KRTQDEMANELGINRTTLWE 67 (155)
T ss_dssp CCCHHHHHHHHTCCHHHHHH
T ss_pred CCCHHHHHHHhCCCHHHHHH
Confidence 58999999999999999976
No 448
>1vq8_1 50S ribosomal protein L37E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.2 PDB: 1vq4_1* 1vq5_1* 1vq6_1* 1vq7_1* 1s72_1* 1vq9_1* 1vqk_1* 1vql_1* 1vqm_1* 1vqn_1* 1vqo_1* 1vqp_1* 1yhq_1* 1yi2_1* 1yij_1* 1yit_1* 1yj9_1* 1yjn_1* 1yjw_1* 2otj_1* ...
Probab=47.64 E-value=5 Score=25.75 Aligned_cols=22 Identities=23% Similarity=0.699 Sum_probs=14.2
Q ss_pred cCCCCCCCCeeeeCCCCceecCCCCc
Q psy6534 7 CCYEHPDAPLIEDYRAGDQICSECGL 32 (309)
Q Consensus 7 ~Cp~C~~~~~v~D~~~G~~vC~~CG~ 32 (309)
.|..||.... . --..+|..||+
T Consensus 19 ~CrRCG~~sy--H--~qK~~Ca~CGy 40 (57)
T 1vq8_1 19 KCRRCGEKSY--H--TKKKVCSSCGF 40 (57)
T ss_dssp ECTTTCSEEE--E--TTTTEETTTCT
T ss_pred cccccCChhh--h--ccccccccccC
Confidence 4888877532 1 12667888886
No 449
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=47.52 E-value=24 Score=25.20 Aligned_cols=32 Identities=22% Similarity=0.035 Sum_probs=27.1
Q ss_pred CccHHHHHHHhcccHHHHHHHHHHHHHHhccc
Q psy6534 167 PRTFKEICAVSKISKKEIGRCFKLILKALETS 198 (309)
Q Consensus 167 ~~tl~eia~~~~~~~~~i~~~~~~l~~~l~~~ 198 (309)
..+.+|||+.++++...+......+.+.|+..
T Consensus 49 G~s~~EIA~~L~iS~~TV~~~l~ri~~KLgv~ 80 (99)
T 1p4w_A 49 GFLVTEIAKKLNRSIKTISSQKKSAMMKLGVD 80 (99)
T ss_dssp TCCHHHHHHHHTSCHHHHHHHHHHHHHHHTCS
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHHHHCCC
Confidence 35779999999999999988888888888753
No 450
>3he0_A Transcriptional regulator, TETR family; ACRR, vibrio parahaemolytic structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.20A {Vibrio parahaemolyticus}
Probab=47.43 E-value=34 Score=26.32 Aligned_cols=40 Identities=25% Similarity=0.222 Sum_probs=29.1
Q ss_pred hHHHHHHHHHHHHHhCCC-CCCHHHHHHHhCCCHHHHHHHHH
Q psy6534 243 PISVAAAAIYMASQASSD-KRSQKEIGDIAGVAEVTIRQSYK 283 (309)
Q Consensus 243 P~~iaaAaiyla~~~~~~-~~~~~~ia~~~~vs~~ti~~~~k 283 (309)
-..|.-|++-+..+. |+ ..|.++||+.+||+..|+-..|.
T Consensus 13 r~~il~aa~~lf~~~-G~~~~tv~~Ia~~agvs~~t~Y~~F~ 53 (196)
T 3he0_A 13 RDQILAAAEQLIAES-GFQGLSMQKLANEAGVAAGTIYRYFS 53 (196)
T ss_dssp HHHHHHHHHHHHHHH-CTTTCCHHHHHHHHTSCHHHHHTTCS
T ss_pred HHHHHHHHHHHHHHh-CcccCCHHHHHHHhCCCcchHHHhcC
Confidence 445555666555443 54 69999999999999999976653
No 451
>3dew_A Transcriptional regulator, TETR family; S genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 1.75A {Geobacter sulfurreducens}
Probab=47.37 E-value=19 Score=28.01 Aligned_cols=41 Identities=17% Similarity=0.096 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHhCCC-CCCHHHHHHHhCCCHHHHHHHHHHH
Q psy6534 244 ISVAAAAIYMASQASSD-KRSQKEIGDIAGVAEVTIRQSYKLM 285 (309)
Q Consensus 244 ~~iaaAaiyla~~~~~~-~~~~~~ia~~~~vs~~ti~~~~kei 285 (309)
..|..|++=+..+ .|+ ..|.++||+.+|||..|+-+.|..-
T Consensus 11 ~~Il~aa~~l~~~-~G~~~~t~~~Ia~~agvs~~t~Y~~F~sK 52 (206)
T 3dew_A 11 SRLMEVATELFAQ-KGFYGVSIRELAQAAGASISMISYHFGGK 52 (206)
T ss_dssp HHHHHHHHHHHHH-HCGGGCCHHHHHHHHTCCHHHHHHHSCHH
T ss_pred HHHHHHHHHHHhc-CCcccCcHHHHHHHhCCCHHHHHHHcCCH
Confidence 3455555554444 364 7999999999999999998887543
No 452
>2fsw_A PG_0823 protein; alpha-beta structure, helix-turn-helix, winged-helix-turn-HE structural genomics, PSI, protein structure initiative; HET: MSE; 2.16A {Porphyromonas gingivalis} SCOP: a.4.5.69
Probab=47.28 E-value=28 Score=24.85 Aligned_cols=31 Identities=13% Similarity=0.174 Sum_probs=27.2
Q ss_pred CCCCCHHHHHHHh-CCCHHHHHHHHHHHHHhh
Q psy6534 259 SDKRSQKEIGDIA-GVAEVTIRQSYKLMYPHA 289 (309)
Q Consensus 259 ~~~~~~~~ia~~~-~vs~~ti~~~~kei~~~~ 289 (309)
.-+.++.||++.+ |++..|+.+..+.|.+.-
T Consensus 36 ~~~~~~~eL~~~l~gis~~~ls~~L~~Le~~G 67 (107)
T 2fsw_A 36 RRIIRYGELKRAIPGISEKMLIDELKFLCGKG 67 (107)
T ss_dssp TSCEEHHHHHHHSTTCCHHHHHHHHHHHHHTT
T ss_pred hCCcCHHHHHHHcccCCHHHHHHHHHHHHHCC
Confidence 4568999999999 599999999999998763
No 453
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=47.27 E-value=16 Score=27.27 Aligned_cols=30 Identities=17% Similarity=0.164 Sum_probs=27.2
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHHHHh
Q psy6534 259 SDKRSQKEIGDIAGVAEVTIRQSYKLMYPH 288 (309)
Q Consensus 259 ~~~~~~~~ia~~~~vs~~ti~~~~kei~~~ 288 (309)
+.++++.+||+.++++.+|+.+..+.|.+.
T Consensus 48 ~~~~t~~eLa~~l~~~~~tvs~~l~~L~~~ 77 (140)
T 3hsr_A 48 DEKLNIKKLGERVFLDSGTLTPLLKKLEKK 77 (140)
T ss_dssp TCEEEHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred cCCcCHHHHHHHHCCChhhHHHHHHHHHHC
Confidence 357899999999999999999999999875
No 454
>1r7j_A Conserved hypothetical protein SSO10A; winged helix-turn-helix, two-stranded antiparallel coiled CO structural genomics, PSI; 1.47A {Sulfolobus solfataricus} SCOP: a.4.5.49 PDB: 1xsx_A
Probab=47.26 E-value=57 Score=22.91 Aligned_cols=44 Identities=14% Similarity=0.109 Sum_probs=32.7
Q ss_pred CChHHHHHHHHHHHHHhCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHh
Q psy6534 241 RSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPH 288 (309)
Q Consensus 241 r~P~~iaaAaiyla~~~~~~~~~~~~ia~~~~vs~~ti~~~~kei~~~ 288 (309)
|...-|..-.+.... .+ ++..+||..+|+++.++++..+.|.+.
T Consensus 4 Rs~~eIi~~IL~~i~--~~--~~~t~La~~~~ls~~~~~~~l~~L~~~ 47 (95)
T 1r7j_A 4 KSKLEIIQAILEACK--SG--SPKTRIMYGANLSYALTGRYIKMLMDL 47 (95)
T ss_dssp CCHHHHHHHHHHHHT--TC--BCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHH--cC--CCHHHHHHHhCcCHHHHHHHHHHHHHC
Confidence 444555544443332 23 899999999999999999999998875
No 455
>3bru_A Regulatory protein, TETR family; structural genomics, APC88928, PSI-2, protein structur initiative; 2.30A {Rhodobacter sphaeroides 2}
Probab=47.11 E-value=24 Score=28.02 Aligned_cols=40 Identities=15% Similarity=0.088 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHhCCC-CCCHHHHHHHhCCCHHHHHHHHHH
Q psy6534 244 ISVAAAAIYMASQASSD-KRSQKEIGDIAGVAEVTIRQSYKL 284 (309)
Q Consensus 244 ~~iaaAaiyla~~~~~~-~~~~~~ia~~~~vs~~ti~~~~ke 284 (309)
..|..|++-+..+ .|+ .+|.++||+.+||+..||=..|+.
T Consensus 33 ~~Il~aA~~l~~~-~G~~~~t~~~IA~~aGvs~~t~Y~~F~s 73 (222)
T 3bru_A 33 QSLIRAGLEHLTE-KGYSSVGVDEILKAARVPKGSFYHYFRN 73 (222)
T ss_dssp HHHHHHHHHHHHH-SCTTTCCHHHHHHHHTCCHHHHHHHCSS
T ss_pred HHHHHHHHHHHHH-cCCCcCcHHHHHHHhCCCcchhhhhCCC
Confidence 4455565655544 465 689999999999999999887743
No 456
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=47.06 E-value=25 Score=24.38 Aligned_cols=33 Identities=21% Similarity=0.294 Sum_probs=27.8
Q ss_pred HhcCCCccHHHHHHHhcccHHH-HHHHHHHHHHH
Q psy6534 162 RQEGVPRTFKEICAVSKISKKE-IGRCFKLILKA 194 (309)
Q Consensus 162 R~~~~~~tl~eia~~~~~~~~~-i~~~~~~l~~~ 194 (309)
..++-+.++.||++.++++... +.+.+++|.+.
T Consensus 25 ~~~~~~~t~~eLa~~l~is~~t~vs~~l~~Le~~ 58 (95)
T 2pg4_A 25 EKKGYEPSLAEIVKASGVSEKTFFMGLKDRLIRA 58 (95)
T ss_dssp HHTTCCCCHHHHHHHHCCCHHHHHTTHHHHHHHT
T ss_pred HhcCCCCCHHHHHHHHCCCchHHHHHHHHHHHHC
Confidence 3455579999999999999999 99988888764
No 457
>3on4_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: MSE; 1.85A {Legionella pneumophila subsp}
Probab=46.97 E-value=19 Score=27.69 Aligned_cols=39 Identities=15% Similarity=0.151 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHhCCC-CCCHHHHHHHhCCCHHHHHHHHH
Q psy6534 244 ISVAAAAIYMASQASSD-KRSQKEIGDIAGVAEVTIRQSYK 283 (309)
Q Consensus 244 ~~iaaAaiyla~~~~~~-~~~~~~ia~~~~vs~~ti~~~~k 283 (309)
..|..|++=+-.+ .|. ..|.++||+.+|||..||-..|+
T Consensus 13 ~~Il~aa~~l~~~-~G~~~~t~~~IA~~agvs~~t~Y~~F~ 52 (191)
T 3on4_A 13 ERILAVAEALIQK-DGYNAFSFKDIATAINIKTASIHYHFP 52 (191)
T ss_dssp HHHHHHHHHHHHH-HCGGGCCHHHHHHHHTCCHHHHHHHCS
T ss_pred HHHHHHHHHHHHH-hCcccCCHHHHHHHhCCCcchhhhcCC
Confidence 3455555544444 355 59999999999999999988774
No 458
>1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG, PSI, protein structure initiative, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2
Probab=46.95 E-value=5.6 Score=32.24 Aligned_cols=31 Identities=10% Similarity=0.198 Sum_probs=0.0
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHHHHhh
Q psy6534 259 SDKRSQKEIGDIAGVAEVTIRQSYKLMYPHA 289 (309)
Q Consensus 259 ~~~~~~~~ia~~~~vs~~ti~~~~kei~~~~ 289 (309)
..++|+++||+.+|+++.|+.+..++|.+..
T Consensus 162 ~~~~t~~~lA~~lg~sr~tvsR~l~~L~~~G 192 (213)
T 1o5l_A 162 TLPVTLEELSRLFGCARPALSRVFQELEREG 192 (213)
T ss_dssp -------------------------------
T ss_pred cCCCCHHHHHHHhCCCHHHHHHHHHHHHHCC
Confidence 4678999999999999999999999997653
No 459
>3qbm_A TETR transcriptional regulator; DNA/RNA-binding three-helical bundle, structural genomics, J center for structural genomics, JCSG; HET: MSE PGE; 1.80A {Chloroflexus aurantiacus}
Probab=46.75 E-value=15 Score=28.56 Aligned_cols=38 Identities=18% Similarity=0.202 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHhCC-CCCCHHHHHHHhCCCHHHHHHHHH
Q psy6534 245 SVAAAAIYMASQASS-DKRSQKEIGDIAGVAEVTIRQSYK 283 (309)
Q Consensus 245 ~iaaAaiyla~~~~~-~~~~~~~ia~~~~vs~~ti~~~~k 283 (309)
.|..|++=+..+ .| ...|.++||+.+|||..|+-..|+
T Consensus 11 ~Il~aa~~l~~~-~G~~~~t~~~IA~~agvs~~t~Y~~F~ 49 (199)
T 3qbm_A 11 RVVAQAAALFNV-SGYAGTAISDIMAATGLEKGGIYRHFE 49 (199)
T ss_dssp HHHHHHHHHHHH-HCSTTCCHHHHHHHHTCCHHHHHTTCS
T ss_pred HHHHHHHHHHHH-hCcCcCCHHHHHHHhCCCccHHHHhCC
Confidence 344455544444 35 468999999999999999877663
No 460
>2qwt_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative; 2.30A {Mycobacterium vanbaalenii pyr-1}
Probab=46.65 E-value=24 Score=27.68 Aligned_cols=37 Identities=22% Similarity=0.157 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHhCCCHHHHHHHHH
Q psy6534 246 VAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283 (309)
Q Consensus 246 iaaAaiyla~~~~~~~~~~~~ia~~~~vs~~ti~~~~k 283 (309)
|..|++=+..+ .|...|.++||+.+|||..||-..|+
T Consensus 18 Il~aA~~lf~~-~G~~~t~~~IA~~agvs~~tlY~~F~ 54 (196)
T 2qwt_A 18 VLEVAYDTFAA-EGLGVPMDEIARRAGVGAGTVYRHFP 54 (196)
T ss_dssp HHHHHHHHHHH-TCTTSCHHHHHHHTTSCHHHHHHHCS
T ss_pred HHHHHHHHHHh-cCCCCCHHHHHHHhCCCHHHHHHHCC
Confidence 44444444433 35689999999999999999988774
No 461
>3trb_A Virulence-associated protein I; mobIle and extrachromosomal element functions, DNA binding P; 2.00A {Coxiella burnetii}
Probab=46.58 E-value=15 Score=26.53 Aligned_cols=25 Identities=12% Similarity=0.163 Sum_probs=21.2
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHH
Q psy6534 259 SDKRSQKEIGDIAGVAEVTIRQSYK 283 (309)
Q Consensus 259 ~~~~~~~~ia~~~~vs~~ti~~~~k 283 (309)
...+|+.++|+.+||+..||.+..+
T Consensus 25 ~~gltq~eLA~~lGis~~~is~ie~ 49 (104)
T 3trb_A 25 LDKMSANQLAKHLAIPTNRVTAILN 49 (104)
T ss_dssp TTSCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 4568999999999999999987654
No 462
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=46.58 E-value=21 Score=26.94 Aligned_cols=29 Identities=14% Similarity=0.187 Sum_probs=26.8
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHh
Q psy6534 260 DKRSQKEIGDIAGVAEVTIRQSYKLMYPH 288 (309)
Q Consensus 260 ~~~~~~~ia~~~~vs~~ti~~~~kei~~~ 288 (309)
.++++.+||+.++++.+|+.+..+.|.+.
T Consensus 54 ~~~~~~eLa~~l~~~~~~vs~~l~~L~~~ 82 (149)
T 4hbl_A 54 NPQTLNSIGRHLDLSSNTLTPMLKRLEQS 82 (149)
T ss_dssp SSEEHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 56899999999999999999999999875
No 463
>3f0c_A TETR-molecule A, transcriptional regulator; MCSG,PSI, SAD, structural genomics, protein structure initiative; 2.96A {Cytophaga hutchinsonii}
Probab=46.56 E-value=26 Score=27.63 Aligned_cols=39 Identities=15% Similarity=0.117 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHhCCC-CCCHHHHHHHhCCCHHHHHHHHH
Q psy6534 244 ISVAAAAIYMASQASSD-KRSQKEIGDIAGVAEVTIRQSYK 283 (309)
Q Consensus 244 ~~iaaAaiyla~~~~~~-~~~~~~ia~~~~vs~~ti~~~~k 283 (309)
..|..|++-+-.+ .|+ ..|.++||+.+|||..|+=..|.
T Consensus 14 ~~Il~aA~~lf~~-~G~~~~ti~~Ia~~agvs~~t~Y~~F~ 53 (216)
T 3f0c_A 14 ELIINAAQKRFAH-YGLCKTTMNEIASDVGMGKASLYYYFP 53 (216)
T ss_dssp HHHHHHHHHHHHH-HCSSSCCHHHHHHHHTCCHHHHHHHCS
T ss_pred HHHHHHHHHHHHH-cCCCcCCHHHHHHHhCCCHHHHHHHcC
Confidence 4455555544443 365 69999999999999999988774
No 464
>2cw1_A SN4M; lambda CRO fold, de novo protein; NMR {Synthetic} SCOP: k.46.1.1
Probab=46.39 E-value=18 Score=23.79 Aligned_cols=22 Identities=18% Similarity=0.211 Sum_probs=19.9
Q ss_pred CHHHHHHHhCCCHHHHHHHHHH
Q psy6534 263 SQKEIGDIAGVAEVTIRQSYKL 284 (309)
Q Consensus 263 ~~~~ia~~~~vs~~ti~~~~ke 284 (309)
++.++|+.+||+..+|.+..+.
T Consensus 15 sq~~~A~~Lgvsq~aVS~~~~~ 36 (65)
T 2cw1_A 15 NQEYAARALGLSQKLIEEVLKR 36 (65)
T ss_dssp CHHHHHHHSSSCHHHHHHHHHT
T ss_pred CHHHHHHHhCCCHHHHHHHHHh
Confidence 9999999999999999997643
No 465
>3cwr_A Transcriptional regulator, TETR family; YP_425770.1, transcriptional regulator of TETR family, bacterial regulatory proteins; 1.50A {Rhodospirillum rubrum atcc 11170}
Probab=46.38 E-value=19 Score=28.05 Aligned_cols=39 Identities=21% Similarity=0.185 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHhCCC-CCCHHHHHHHhCCCHHHHHHHHHH
Q psy6534 245 SVAAAAIYMASQASSD-KRSQKEIGDIAGVAEVTIRQSYKL 284 (309)
Q Consensus 245 ~iaaAaiyla~~~~~~-~~~~~~ia~~~~vs~~ti~~~~ke 284 (309)
.|..|++=+..+ .|. .+|.++||+.+|||..|+-..|+.
T Consensus 21 ~Il~aa~~lf~~-~G~~~~ti~~Ia~~agvs~~t~Y~~F~s 60 (208)
T 3cwr_A 21 SIVGAAQRLLSS-GGAAAMTMEGVASEAGIAKKTLYRFASG 60 (208)
T ss_dssp HHHHHHHHHHHH-HCGGGCCHHHHHHHHTCCHHHHHHHCSS
T ss_pred HHHHHHHHHHHH-cCHHhccHHHHHHHhCCCHHHHHHHcCC
Confidence 355555554444 354 699999999999999999888743
No 466
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=46.27 E-value=34 Score=23.78 Aligned_cols=29 Identities=24% Similarity=0.398 Sum_probs=25.6
Q ss_pred CCCccHHHHHHHhcccHHHHHHHHHHHHH
Q psy6534 165 GVPRTFKEICAVSKISKKEIGRCFKLILK 193 (309)
Q Consensus 165 ~~~~tl~eia~~~~~~~~~i~~~~~~l~~ 193 (309)
+-+.+..||++.++++...+.+.++.|.+
T Consensus 34 ~~~~t~~ela~~l~is~~tv~~~l~~L~~ 62 (109)
T 2d1h_A 34 EKPITSEELADIFKLSKTTVENSLKKLIE 62 (109)
T ss_dssp CSCEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 55799999999999999999888888755
No 467
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=46.27 E-value=21 Score=27.69 Aligned_cols=29 Identities=7% Similarity=0.056 Sum_probs=26.7
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHh
Q psy6534 260 DKRSQKEIGDIAGVAEVTIRQSYKLMYPH 288 (309)
Q Consensus 260 ~~~~~~~ia~~~~vs~~ti~~~~kei~~~ 288 (309)
-++++.+||+.+|++.+|+.+..+.|.+.
T Consensus 58 ~~~t~~eLa~~l~is~~tvs~~l~~Le~~ 86 (168)
T 2nyx_A 58 GPINLATLATLLGVQPSATGRMVDRLVGA 86 (168)
T ss_dssp CSEEHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHC
Confidence 36899999999999999999999999876
No 468
>3jsj_A Putative TETR-family transcriptional regulator; DNA-binding, transcription regulation; 2.10A {Streptomyces avermitilis ma-4680}
Probab=46.20 E-value=27 Score=26.96 Aligned_cols=39 Identities=15% Similarity=0.161 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHhCCCCCCHHHHHHHhCCCHHHHHHHHH
Q psy6534 244 ISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283 (309)
Q Consensus 244 ~~iaaAaiyla~~~~~~~~~~~~ia~~~~vs~~ti~~~~k 283 (309)
..|..|++=+-++. |+..|.++||+.+|||..||-..|+
T Consensus 12 ~~Il~aA~~lf~~~-G~~~t~~~IA~~aGvs~~tly~~F~ 50 (190)
T 3jsj_A 12 ERLLEAAAALTYRD-GVGIGVEALCKAAGVSKRSMYQLFE 50 (190)
T ss_dssp HHHHHHHHHHHHHH-CTTCCHHHHHHHHTCCHHHHHHHCS
T ss_pred HHHHHHHHHHHHHh-CccccHHHHHHHhCCCHHHHHHHcC
Confidence 44555555444443 4339999999999999999988774
No 469
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=46.13 E-value=8.9 Score=28.54 Aligned_cols=22 Identities=23% Similarity=0.495 Sum_probs=0.0
Q ss_pred cCCCCCCCCeeeeCCCCce-ecCCCC
Q psy6534 7 CCYEHPDAPLIEDYRAGDQ-ICSECG 31 (309)
Q Consensus 7 ~Cp~C~~~~~v~D~~~G~~-vC~~CG 31 (309)
.|+.||. .+....-.. .|..||
T Consensus 75 ~C~~CG~---~~e~~~~~~~~CP~Cg 97 (119)
T 2kdx_A 75 ECKDCSH---VFKPNALDYGVCEKCH 97 (119)
T ss_dssp ECSSSSC---EECSCCSTTCCCSSSS
T ss_pred EcCCCCC---EEeCCCCCCCcCcccc
No 470
>2zb9_A Putative transcriptional regulator; transcription regulator, TETR family, helix-turn-helix, DNA- binding, transcription regulation; 2.25A {Streptomyces coelicolor}
Probab=46.13 E-value=19 Score=28.52 Aligned_cols=37 Identities=14% Similarity=0.196 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHhCCC-CCCHHHHHHHhCCCHHHHHHHHH
Q psy6534 246 VAAAAIYMASQASSD-KRSQKEIGDIAGVAEVTIRQSYK 283 (309)
Q Consensus 246 iaaAaiyla~~~~~~-~~~~~~ia~~~~vs~~ti~~~~k 283 (309)
|..|++-+..+ .|+ ..|.++||+.+||+..||-..|+
T Consensus 28 Il~aA~~lf~~-~G~~~~t~~~IA~~agvs~~t~Y~~F~ 65 (214)
T 2zb9_A 28 VLHAVGELLLT-EGTAQLTFERVARVSGVSKTTLYKWWP 65 (214)
T ss_dssp HHHHHHHHHHH-HCGGGCCHHHHHHHHCCCHHHHHHHCS
T ss_pred HHHHHHHHHHH-hCcccCCHHHHHHHHCCCHHHHHHHCC
Confidence 44444444433 354 68999999999999999988774
No 471
>3cec_A Putative antidote protein of plasmid maintenance; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.60A {Nostoc punctiforme}
Probab=46.13 E-value=15 Score=26.01 Aligned_cols=24 Identities=21% Similarity=0.304 Sum_probs=20.3
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHH
Q psy6534 260 DKRSQKEIGDIAGVAEVTIRQSYK 283 (309)
Q Consensus 260 ~~~~~~~ia~~~~vs~~ti~~~~k 283 (309)
..++++++|+.+|++..||.+..+
T Consensus 30 ~gltq~~lA~~~gis~~~is~~e~ 53 (104)
T 3cec_A 30 LDINTANFAEILGVSNQTIQEVIN 53 (104)
T ss_dssp HTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHc
Confidence 358999999999999999987543
No 472
>4fx0_A Probable transcriptional repressor protein; helix-turn-helix, DNA binding, transcription regulator; 2.70A {Mycobacterium tuberculosis} PDB: 4fx4_A*
Probab=46.09 E-value=21 Score=27.24 Aligned_cols=32 Identities=19% Similarity=0.256 Sum_probs=26.0
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHhhcccC
Q psy6534 260 DKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKLF 293 (309)
Q Consensus 260 ~~~~~~~ia~~~~vs~~ti~~~~kei~~~~~~l~ 293 (309)
.++++.+||+.++++.+|+.+..+.|.+. -|+
T Consensus 51 ~~~t~~eLa~~l~~~~~tvsr~v~~Le~~--glV 82 (148)
T 4fx0_A 51 IDLTMSELAARIGVERTTLTRNLEVMRRD--GLV 82 (148)
T ss_dssp ---CHHHHHHHHTCCHHHHHHHHHHHHHT--TSB
T ss_pred CCcCHHHHHHHHCCChhhHHHHHHHHHHC--CCE
Confidence 46899999999999999999999999765 355
No 473
>1sgm_A Putative HTH-type transcriptional regulator YXAF; structural genomics, PSI, protein structure initiative; 2.00A {Bacillus subtilis} SCOP: a.4.1.9 a.121.1.1
Probab=46.05 E-value=13 Score=28.64 Aligned_cols=40 Identities=8% Similarity=0.077 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHhCC-CCCCHHHHHHHhCCCHHHHHHHHHH
Q psy6534 244 ISVAAAAIYMASQASS-DKRSQKEIGDIAGVAEVTIRQSYKL 284 (309)
Q Consensus 244 ~~iaaAaiyla~~~~~-~~~~~~~ia~~~~vs~~ti~~~~ke 284 (309)
..|..|++-+..+ .| ..+|.++||+.+|||..|+-..|+.
T Consensus 9 ~~Il~aa~~l~~~-~G~~~~t~~~Ia~~agvs~~t~Y~~F~~ 49 (191)
T 1sgm_A 9 EKILHTASRLSQL-QGYHATGLNQIVKESGAPKGSLYHFFPN 49 (191)
T ss_dssp HHHHHHHHHHHHH-HCTTTCCHHHHHHHHCCCSCHHHHSTTT
T ss_pred HHHHHHHHHHHHH-cCccccCHHHHHHHHCCCchhHHHHccc
Confidence 4455555555544 35 4699999999999999999888864
No 474
>3c2b_A Transcriptional regulator, TETR family; structural genomics, APC5923, PSI-2, PR structure initiative; 2.10A {Agrobacterium tumefaciens str}
Probab=46.05 E-value=26 Score=27.82 Aligned_cols=39 Identities=8% Similarity=0.141 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHhCCC-CCCHHHHHHHhCCCHHHHHHHHHH
Q psy6534 245 SVAAAAIYMASQASSD-KRSQKEIGDIAGVAEVTIRQSYKL 284 (309)
Q Consensus 245 ~iaaAaiyla~~~~~~-~~~~~~ia~~~~vs~~ti~~~~ke 284 (309)
.|..|++-+..+ .|+ ..|.++||+.+||+..||-..|+.
T Consensus 19 ~Il~aA~~lf~~-~G~~~~s~~~IA~~agvs~~t~Y~~F~s 58 (221)
T 3c2b_A 19 AVLDQALRLLVE-GGEKALTTSGLARAANCSKESLYKWFGD 58 (221)
T ss_dssp HHHHHHHHHHHH-HCGGGCCHHHHHHHHTCCHHHHHHHHSS
T ss_pred HHHHHHHHHHHh-CCcccCCHHHHHHHhCCCHHHHHHhCCC
Confidence 355555544444 354 589999999999999999988843
No 475
>3op9_A PLI0006 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, transcription regulat; HET: MSE; 1.90A {Listeria innocua}
Probab=45.95 E-value=18 Score=25.99 Aligned_cols=23 Identities=13% Similarity=0.167 Sum_probs=20.1
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHH
Q psy6534 261 KRSQKEIGDIAGVAEVTIRQSYK 283 (309)
Q Consensus 261 ~~~~~~ia~~~~vs~~ti~~~~k 283 (309)
.+|++++|+.+|++..||.+.-+
T Consensus 22 glsq~~lA~~~gis~~~i~~~e~ 44 (114)
T 3op9_A 22 GLKNHQIAELLNVQTRTVAYYMS 44 (114)
T ss_dssp TCCHHHHHHHHTSCHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHc
Confidence 57999999999999999987654
No 476
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=45.88 E-value=16 Score=27.00 Aligned_cols=29 Identities=3% Similarity=0.036 Sum_probs=26.6
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHh
Q psy6534 260 DKRSQKEIGDIAGVAEVTIRQSYKLMYPH 288 (309)
Q Consensus 260 ~~~~~~~ia~~~~vs~~ti~~~~kei~~~ 288 (309)
.++++.+||+.++++.+|+.+..+.|.+.
T Consensus 49 ~~~t~~ela~~l~~s~~~vs~~l~~Le~~ 77 (142)
T 2fbi_A 49 GEMESYQLANQACILRPSMTGVLARLERD 77 (142)
T ss_dssp CSEEHHHHHHHTTCCHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHCCCHhHHHHHHHHHHHC
Confidence 36899999999999999999999999875
No 477
>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=45.76 E-value=15 Score=27.50 Aligned_cols=28 Identities=18% Similarity=0.151 Sum_probs=26.5
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHHh
Q psy6534 261 KRSQKEIGDIAGVAEVTIRQSYKLMYPH 288 (309)
Q Consensus 261 ~~~~~~ia~~~~vs~~ti~~~~kei~~~ 288 (309)
++++.+||+.++++..|+.+..+.|.+.
T Consensus 54 ~~~~~~la~~l~~~~~tvs~~l~~L~~~ 81 (147)
T 1z91_A 54 TLTVKKMGEQLYLDSGTLTPMLKRMEQQ 81 (147)
T ss_dssp EEEHHHHHHTTTCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCCCcCcHHHHHHHHHHC
Confidence 7899999999999999999999999876
No 478
>1stz_A Heat-inducible transcription repressor HRCA homol; circe element, structural genomics, BSGC structure FUN NIH, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.51 d.110.2.3
Probab=45.75 E-value=19 Score=32.01 Aligned_cols=31 Identities=16% Similarity=0.194 Sum_probs=28.3
Q ss_pred CCCCCCHHHHHHHh--CCCHHHHHHHHHHHHHh
Q psy6534 258 SSDKRSQKEIGDIA--GVAEVTIRQSYKLMYPH 288 (309)
Q Consensus 258 ~~~~~~~~~ia~~~--~vs~~ti~~~~kei~~~ 288 (309)
.+.++..+++++.+ +||+.|||+-..+|.+.
T Consensus 33 ~~~pV~s~~La~~~~l~VS~aTIRrDL~~LE~~ 65 (338)
T 1stz_A 33 NKKPVSSQRVLEVSNIEFSSATIRNDMKKLEYL 65 (338)
T ss_dssp HCSCBCHHHHHHHSCCCSCHHHHHHHHHHHHHT
T ss_pred cCCCccHHHHHHHhCCCCCHHHHHHHHHHHHHC
Confidence 36889999999998 99999999999999875
No 479
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=45.71 E-value=21 Score=27.18 Aligned_cols=29 Identities=14% Similarity=0.184 Sum_probs=26.9
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHh
Q psy6534 260 DKRSQKEIGDIAGVAEVTIRQSYKLMYPH 288 (309)
Q Consensus 260 ~~~~~~~ia~~~~vs~~ti~~~~kei~~~ 288 (309)
.++++.+||+.++++.+|+.+..+.|.+.
T Consensus 63 ~~~t~~eLa~~l~~~~~tvs~~l~~Le~~ 91 (159)
T 3s2w_A 63 DGINQESLSDYLKIDKGTTARAIQKLVDE 91 (159)
T ss_dssp CSEEHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 56899999999999999999999999875
No 480
>1y6u_A XIS, excisionase from transposon TN916; structure, DNA architectural protein, tyrosine recombinase, winged-helix protein; NMR {Enterococcus faecalis}
Probab=45.61 E-value=15 Score=24.63 Aligned_cols=23 Identities=13% Similarity=0.096 Sum_probs=19.9
Q ss_pred CCHHHHHHHhCCCHHHHHHHHHH
Q psy6534 262 RSQKEIGDIAGVAEVTIRQSYKL 284 (309)
Q Consensus 262 ~~~~~ia~~~~vs~~ti~~~~ke 284 (309)
+|++|.|+.+|+++.++++..++
T Consensus 17 LTi~EaAeylgIg~~~l~~L~~~ 39 (70)
T 1y6u_A 17 LTIEEASKYFRIGENKLRRLAEE 39 (70)
T ss_dssp EEHHHHHHHTCSCHHHHHHHHHH
T ss_pred eCHHHHHHHHCcCHHHHHHHHHc
Confidence 57899999999999998877654
No 481
>2g7g_A RHA04620, putative transcriptional regulator; helix-turn-helix, structural genomics, PSI, protein structur initiative; 2.01A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=45.59 E-value=33 Score=27.67 Aligned_cols=41 Identities=15% Similarity=0.099 Sum_probs=31.8
Q ss_pred ChHHHHHHHHHHHHHhCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q psy6534 242 SPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKL 284 (309)
Q Consensus 242 ~P~~iaaAaiyla~~~~~~~~~~~~ia~~~~vs~~ti~~~~ke 284 (309)
....|..|++=+..+. | .+|.++||+.+||+..||=..|+.
T Consensus 12 ~r~~Il~aA~~l~~~~-G-~~s~~~IA~~aGvs~~tlY~hF~~ 52 (213)
T 2g7g_A 12 DRERIAEAALELVDRD-G-DFRMPDLARHLNVQVSSIYHHAKG 52 (213)
T ss_dssp CHHHHHHHHHHHHHHH-S-SCCHHHHHHHTTSCHHHHHTTSCH
T ss_pred CHHHHHHHHHHHHHHc-C-CCCHHHHHHHhCCCHhHHHHHcCC
Confidence 3456777777666554 5 999999999999999999776643
No 482
>4gop_C Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=45.59 E-value=11 Score=34.85 Aligned_cols=28 Identities=11% Similarity=0.286 Sum_probs=21.4
Q ss_pred ccCCC--CCCCCeeeeCCCCceecCCCCcccc
Q psy6534 6 VCCYE--HPDAPLIEDYRAGDQICSECGLVVG 35 (309)
Q Consensus 6 ~~Cp~--C~~~~~v~D~~~G~~vC~~CG~V~~ 35 (309)
..||. |++. +.+...|...|..||...+
T Consensus 309 ~aC~~~~C~kk--v~~~~~g~~~C~~C~~~~~ 338 (444)
T 4gop_C 309 TACASEGCNKK--VNLDHENNWRCEKCDRSYA 338 (444)
T ss_dssp EECCSTTCCCB--EEECTTSCEEETTTTEEES
T ss_pred ccCCcccCCCc--cccCCCccEECCCCCCcCc
Confidence 36999 9874 4455688999999997753
No 483
>1ryq_A DNA-directed RNA polymerase, subunit E''; structural genomics, zinc, PSI, protein structure initiative; 1.38A {Pyrococcus furiosus} SCOP: g.41.9.3 PDB: 3qqc_E
Probab=45.58 E-value=7 Score=26.25 Aligned_cols=31 Identities=23% Similarity=0.583 Sum_probs=20.9
Q ss_pred ccCCCCCCCCeeeeCCCCceecCCCCccccCcccccCCCccccc
Q psy6534 6 VCCYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFS 49 (309)
Q Consensus 6 ~~Cp~C~~~~~v~D~~~G~~vC~~CG~V~~e~~id~~~ewr~f~ 49 (309)
..|.+|.. ++ ....|.+||.- +.+++|..+-
T Consensus 12 ~AC~~C~~--~~-----~~~~CPnC~s~------~tS~~w~G~V 42 (69)
T 1ryq_A 12 KACRHCHY--IT-----SEDRCPVCGSR------DLSEEWFDLV 42 (69)
T ss_dssp EEETTTCB--EE-----SSSSCTTTCCC------CEESCEEEEE
T ss_pred hhHHhCCc--cc-----cCCcCCCccCC------ccCCccceEE
Confidence 37999976 44 35579999932 3567777663
No 484
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=45.56 E-value=22 Score=26.83 Aligned_cols=29 Identities=3% Similarity=-0.098 Sum_probs=26.7
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHh
Q psy6534 260 DKRSQKEIGDIAGVAEVTIRQSYKLMYPH 288 (309)
Q Consensus 260 ~~~~~~~ia~~~~vs~~ti~~~~kei~~~ 288 (309)
.++++.+||+.++++.+|+.+..+.|.+.
T Consensus 54 ~~~t~~eLa~~l~~~~~tvs~~l~~Le~~ 82 (154)
T 2qww_A 54 PGISVADLTKRLIITGSSAAANVDGLISL 82 (154)
T ss_dssp TTEEHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 46899999999999999999999999875
No 485
>2pij_A Prophage PFL 6 CRO; transcription factor, helix-turn-helix, structural evolution, transcription; 1.70A {Pseudomonas fluorescens}
Probab=45.49 E-value=37 Score=21.52 Aligned_cols=21 Identities=24% Similarity=0.366 Sum_probs=19.3
Q ss_pred CHHHHHHHhCCCHHHHHHHHH
Q psy6534 263 SQKEIGDIAGVAEVTIRQSYK 283 (309)
Q Consensus 263 ~~~~ia~~~~vs~~ti~~~~k 283 (309)
++.++|+.+|++..+|.+..+
T Consensus 15 s~~~~A~~lgis~~~vs~~~~ 35 (67)
T 2pij_A 15 TQSALAAALGVNQSAISQMVR 35 (67)
T ss_dssp CHHHHHHHHTSCHHHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHHc
Confidence 899999999999999988764
No 486
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=45.47 E-value=13 Score=25.74 Aligned_cols=26 Identities=19% Similarity=0.390 Sum_probs=17.2
Q ss_pred ccCCCCCCCCeeeeCCCCceecCCCCccc
Q psy6534 6 VCCYEHPDAPLIEDYRAGDQICSECGLVV 34 (309)
Q Consensus 6 ~~Cp~C~~~~~v~D~~~G~~vC~~CG~V~ 34 (309)
..||.|... +..| .+...|..||.-+
T Consensus 3 ~~CP~C~~~-l~~~--~~~~~C~~C~~~~ 28 (81)
T 2jrp_A 3 ITCPVCHHA-LERN--GDTAHCETCAKDF 28 (81)
T ss_dssp CCCSSSCSC-CEEC--SSEEECTTTCCEE
T ss_pred CCCCCCCCc-cccC--CCceECccccccC
Confidence 579999764 4443 4456688887655
No 487
>2guh_A Putative TETR-family transcriptional regulator; helix-turn-helix, TETR fold, structural genomics, PSI, prote structure initiative; HET: MSE; 1.52A {Rhodococcus SP}
Probab=45.42 E-value=24 Score=28.35 Aligned_cols=41 Identities=20% Similarity=0.101 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHhCCC-CCCHHHHHHHhCCCHHHHHHHHHHHH
Q psy6534 245 SVAAAAIYMASQASSD-KRSQKEIGDIAGVAEVTIRQSYKLMY 286 (309)
Q Consensus 245 ~iaaAaiyla~~~~~~-~~~~~~ia~~~~vs~~ti~~~~kei~ 286 (309)
.|..|++-+..+ .|+ ..|.++||+.+||+..||-..|..-.
T Consensus 43 ~Il~AA~~lf~e-~G~~~~tv~~IA~~AGvs~~tlY~~F~sKe 84 (214)
T 2guh_A 43 LIVDAAGRAFAT-RPYREITLKDIAEDAGVSAPLIIKYFGSKE 84 (214)
T ss_dssp HHHHHHHHHHHH-SCGGGCCHHHHHHHHTSCHHHHHHHHSSHH
T ss_pred HHHHHHHHHHHH-cChhhcCHHHHHHHhCCCHHHHHHHcCCHH
Confidence 344455544433 465 58999999999999999999885433
No 488
>3vk0_A NHTF, transcriptional regulator; HTH motif, XRE transcription factor, DNA binding protein; 1.88A {Neisseria meningitidis}
Probab=45.28 E-value=16 Score=26.50 Aligned_cols=22 Identities=18% Similarity=0.265 Sum_probs=19.0
Q ss_pred CCCCHHHHHHHhCCCHHHHHHH
Q psy6534 260 DKRSQKEIGDIAGVAEVTIRQS 281 (309)
Q Consensus 260 ~~~~~~~ia~~~~vs~~ti~~~ 281 (309)
..++++++|+.+|++..+|.+.
T Consensus 33 ~gltq~elA~~~gis~~~is~~ 54 (114)
T 3vk0_A 33 KGWSQEELARQCGLDRTYVSAV 54 (114)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHH
Confidence 3579999999999999998775
No 489
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=45.22 E-value=26 Score=24.25 Aligned_cols=28 Identities=14% Similarity=0.185 Sum_probs=21.3
Q ss_pred ccHHHHHHHhcccHHHHHHHHHHHHHHh
Q psy6534 168 RTFKEICAVSKISKKEIGRCFKLILKAL 195 (309)
Q Consensus 168 ~tl~eia~~~~~~~~~i~~~~~~l~~~l 195 (309)
.+.+|||..++++...+.....+.++.|
T Consensus 54 ~s~~eIA~~lgis~~tV~~~l~ra~~~L 81 (92)
T 3hug_A 54 WSTAQIATDLGIAEGTVKSRLHYAVRAL 81 (92)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 4789999999999888776655555444
No 490
>1zk8_A Transcriptional regulator, TETR family; TETR member,transcriptional regulator, STRU genomics, PSI, protein structure initiative; 2.15A {Bacillus cereus atcc 14579} SCOP: a.4.1.9 a.121.1.1
Probab=44.96 E-value=31 Score=26.41 Aligned_cols=40 Identities=13% Similarity=0.139 Sum_probs=28.6
Q ss_pred hHHHHHHHHHHHHHhCCC-CCCHHHHHHHhCCCHHHHHHHHH
Q psy6534 243 PISVAAAAIYMASQASSD-KRSQKEIGDIAGVAEVTIRQSYK 283 (309)
Q Consensus 243 P~~iaaAaiyla~~~~~~-~~~~~~ia~~~~vs~~ti~~~~k 283 (309)
-..|..|++=+..+ .|. ..|.++||+.+||+..|+=..|+
T Consensus 10 r~~Il~aa~~l~~~-~G~~~~t~~~Ia~~agvs~~t~Y~~F~ 50 (183)
T 1zk8_A 10 LQKIVETAAEIADA-NGVQEVTLASLAQTLGVRSPSLYNHVK 50 (183)
T ss_dssp HHHHHHHHHHHHHH-HCGGGCCHHHHHHHHTSCHHHHTTTCS
T ss_pred HHHHHHHHHHHHHh-cCccccCHHHHHHHcCCCchHHHHHcC
Confidence 34555555554444 354 59999999999999999866653
No 491
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=44.94 E-value=24 Score=25.96 Aligned_cols=29 Identities=7% Similarity=0.003 Sum_probs=26.6
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHh
Q psy6534 260 DKRSQKEIGDIAGVAEVTIRQSYKLMYPH 288 (309)
Q Consensus 260 ~~~~~~~ia~~~~vs~~ti~~~~kei~~~ 288 (309)
.+.++.+||+.++++.+|+.+..+.|.+.
T Consensus 47 ~~~~~~~la~~l~~~~~tvs~~l~~L~~~ 75 (138)
T 1jgs_A 47 ACITPVELKKVLSVDLGALTRMLDRLVCK 75 (138)
T ss_dssp SSBCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHCCChHHHHHHHHHHHHC
Confidence 46899999999999999999999999876
No 492
>2ras_A Transcriptional regulator, TETR family; bacterial regulatory proteins, DNA-binding, DNA binding 3-helical bundle fold; 1.80A {Novosphingobium aromaticivorans}
Probab=44.88 E-value=30 Score=27.28 Aligned_cols=38 Identities=11% Similarity=0.257 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHhCC-CCCCHHHHHHHhCCCHHHHHHHHH
Q psy6534 245 SVAAAAIYMASQASS-DKRSQKEIGDIAGVAEVTIRQSYK 283 (309)
Q Consensus 245 ~iaaAaiyla~~~~~-~~~~~~~ia~~~~vs~~ti~~~~k 283 (309)
.|..|++=+-++ .| ...|.++||+.+|||..||=+.|.
T Consensus 15 ~Il~aA~~lf~~-~G~~~~s~~~IA~~agvs~~t~Y~~F~ 53 (212)
T 2ras_A 15 RLVDVAQAIVEE-RGGAGLTLSELAARAGISQANLSRYFE 53 (212)
T ss_dssp HHHHHHHHHHHH-HTSSCCCHHHHHHHHTSCHHHHTTTCS
T ss_pred HHHHHHHHHHHH-hCcccCcHHHHHHHhCCCHHHHHHHcC
Confidence 344455544444 35 468999999999999999977663
No 493
>1yyv_A Putative transcriptional regulator; reductive methylation, D lysine, structural genomics, PSI; HET: MLY; 2.35A {Salmonella typhimurium} SCOP: a.4.5.69
Probab=44.77 E-value=26 Score=26.29 Aligned_cols=31 Identities=16% Similarity=0.254 Sum_probs=27.5
Q ss_pred CCCCCHHHHHHHh-CCCHHHHHHHHHHHHHhh
Q psy6534 259 SDKRSQKEIGDIA-GVAEVTIRQSYKLMYPHA 289 (309)
Q Consensus 259 ~~~~~~~~ia~~~-~vs~~ti~~~~kei~~~~ 289 (309)
.-+.++.||++.+ |++..|+.+..+.|.+.-
T Consensus 46 ~g~~~~~eLa~~l~gis~~tls~~L~~Le~~G 77 (131)
T 1yyv_A 46 DGTHRFSDLRRXMGGVSEXMLAQSLQALEQDG 77 (131)
T ss_dssp GCCEEHHHHHHHSTTCCHHHHHHHHHHHHHHT
T ss_pred cCCCCHHHHHHHhccCCHHHHHHHHHHHHHCC
Confidence 3468999999999 799999999999998763
No 494
>3s5r_A Transcriptional regulator TETR family; DNA/RNA-binding 3-helical bundle, tetracyclin repressor-like structural genomics; 2.60A {Syntrophus aciditrophicus}
Probab=44.76 E-value=24 Score=27.80 Aligned_cols=39 Identities=21% Similarity=0.186 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHhCCC-CCCHHHHHHHhCCCHHHHHHHHH
Q psy6534 244 ISVAAAAIYMASQASSD-KRSQKEIGDIAGVAEVTIRQSYK 283 (309)
Q Consensus 244 ~~iaaAaiyla~~~~~~-~~~~~~ia~~~~vs~~ti~~~~k 283 (309)
..|..|++=+..+ .|+ ..|.++||+.+|||..|+-+.|.
T Consensus 13 ~~Il~aa~~l~~~-~G~~~~ti~~Ia~~agvs~~t~Y~~F~ 52 (216)
T 3s5r_A 13 ELLLDAATTLFAE-QGIAATTMAEIAASVGVNPAMIHYYFK 52 (216)
T ss_dssp HHHHHHHHHHHHH-HCTTTCCHHHHHHTTTCCHHHHHHHCS
T ss_pred HHHHHHHHHHHHH-cCcccCCHHHHHHHHCCCHHHHHHHcC
Confidence 4455555544444 354 59999999999999999988774
No 495
>3bhq_A Transcriptional regulator; bacterial RE proteins, structural genomics, joint center for structural JCSG, protein structure initiative, PSI-2; HET: MSE; 1.54A {Mesorhizobium loti}
Probab=44.68 E-value=39 Score=26.64 Aligned_cols=25 Identities=24% Similarity=0.333 Sum_probs=21.9
Q ss_pred CC-CCCHHHHHHHhCCCHHHHHHHHH
Q psy6534 259 SD-KRSQKEIGDIAGVAEVTIRQSYK 283 (309)
Q Consensus 259 ~~-~~~~~~ia~~~~vs~~ti~~~~k 283 (309)
|+ ..|.++||+.+|||..||=..|+
T Consensus 29 G~~~ts~~~IA~~aGvsk~tlY~~F~ 54 (211)
T 3bhq_A 29 GYDGTSMEEIATKAGASKQTVYKHFT 54 (211)
T ss_dssp CSTTCCHHHHHHHHTCCHHHHHHHHC
T ss_pred CcccCCHHHHHHHhCCCHHHHHHHcC
Confidence 65 58999999999999999988773
No 496
>1jhf_A LEXA repressor; LEXA SOS repressor, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.2 b.87.1.1 PDB: 1jhh_A 3jso_A* 3jsp_A* 3k3r_E* 1jhc_A 1jhe_A 1lea_A 1leb_A
Probab=44.62 E-value=30 Score=27.78 Aligned_cols=32 Identities=13% Similarity=0.129 Sum_probs=26.4
Q ss_pred HhCCCCCCHHHHHHHhCCC-HHHHHHHHHHHHH
Q psy6534 256 QASSDKRSQKEIGDIAGVA-EVTIRQSYKLMYP 287 (309)
Q Consensus 256 ~~~~~~~~~~~ia~~~~vs-~~ti~~~~kei~~ 287 (309)
+..|.+.|++++|+.+|++ .+|+.+..+.|.+
T Consensus 20 ~~~g~~ps~~elA~~lgiss~~tv~~~~~~l~~ 52 (202)
T 1jhf_A 20 SQTGMPPTRAEIAQRLGFRSPNAAEEHLKALAR 52 (202)
T ss_dssp HHHSSCCCHHHHHHHTTCSSHHHHHHHHHHHHH
T ss_pred HHhCCCccHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 3346666999999999999 9999988877765
No 497
>2b5a_A C.BCLI; helix-turn-helix motif, gene regulation; 1.54A {Bacillus caldolyticus} SCOP: a.35.1.3
Probab=44.61 E-value=61 Score=20.86 Aligned_cols=46 Identities=11% Similarity=0.200 Sum_probs=33.5
Q ss_pred CCccHHHHHHHhcccHHHHHHHHHHHHHHhcccCCCCChHHHHHHHHhhCCCCHH
Q psy6534 166 VPRTFKEICAVSKISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNM 220 (309)
Q Consensus 166 ~~~tl~eia~~~~~~~~~i~~~~~~l~~~l~~~~~~~~p~~~i~~~~~~L~l~~~ 220 (309)
..+|..++|+.+|++...|.+..+ |... -+...+.+++..|+++..
T Consensus 22 ~glsq~~lA~~~gis~~~i~~~e~------g~~~---~~~~~l~~la~~l~~~~~ 67 (77)
T 2b5a_A 22 KGVSQEELADLAGLHRTYISEVER------GDRN---ISLINIHKICAALDIPAS 67 (77)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHT------TCSC---CBHHHHHHHHHHTTCCHH
T ss_pred cCCCHHHHHHHHCCCHHHHHHHHC------CCCC---CCHHHHHHHHHHhCcCHH
Confidence 357899999999999888766543 2211 135678889999999764
No 498
>1t33_A Putative transcriptional repressor (TETR/ACRR FAM; structural genomics, TETR/CCRR FA helix turn helix DNA binding domain, PSI; 2.20A {Salmonella typhimurium} SCOP: a.4.1.9 a.121.1.1
Probab=44.61 E-value=28 Score=27.70 Aligned_cols=38 Identities=18% Similarity=0.224 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHhCCCHHHHHHHHH
Q psy6534 245 SVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYK 283 (309)
Q Consensus 245 ~iaaAaiyla~~~~~~~~~~~~ia~~~~vs~~ti~~~~k 283 (309)
.|..|++-+.++. |+..|.++||+.+||+..||-..|.
T Consensus 16 ~Il~aA~~lf~~~-G~~~s~~~IA~~agvs~~tiY~~F~ 53 (224)
T 1t33_A 16 QLIAAALAQFGEY-GLHATTRDIAALAGQNIAAITYYFG 53 (224)
T ss_dssp HHHHHHHHHHHHH-GGGSCHHHHHHHHTSCHHHHHHHHS
T ss_pred HHHHHHHHHHHHh-CccccHHHHHHHhCCCHHHHHHhcC
Confidence 3444555444442 4339999999999999999988884
No 499
>3g7r_A Putative transcriptional regulator; TETR, all-helical, structural genomics, PSI-2, protein structure initiative; 1.38A {Streptomyces coelicolor A3}
Probab=44.50 E-value=30 Score=27.73 Aligned_cols=39 Identities=13% Similarity=0.078 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHhCCC-CCCHHHHHHHhCCCHHHHHHHHH
Q psy6534 244 ISVAAAAIYMASQASSD-KRSQKEIGDIAGVAEVTIRQSYK 283 (309)
Q Consensus 244 ~~iaaAaiyla~~~~~~-~~~~~~ia~~~~vs~~ti~~~~k 283 (309)
..|..|++-+..+ .|+ ..|.++||+.+||+..||-..|.
T Consensus 38 ~~Il~aA~~lf~~-~G~~~~t~~~IA~~AGvs~~tlY~~F~ 77 (221)
T 3g7r_A 38 ARLLGTATRIFYA-EGIHSVGIDRITAEAQVTRATLYRHFS 77 (221)
T ss_dssp HHHHHHHHHHHHH-HCSTTSCHHHHHHHHTCCHHHHHHHCS
T ss_pred HHHHHHHHHHHHH-hCcccCCHHHHHHHhCCCHHHHHHHCC
Confidence 3455555544444 354 69999999999999999988774
No 500
>2k1p_A Zinc finger RAN-binding domain-containing protein 2; ZNF265, RNA binding, ranbp2, RBZ, ZIS, alternative splicing, metal-binding, mRNA processing; NMR {Homo sapiens} PDB: 3g9y_A
Probab=44.47 E-value=17 Score=20.42 Aligned_cols=12 Identities=42% Similarity=0.742 Sum_probs=7.4
Q ss_pred CCceecCCCCcc
Q psy6534 22 AGDQICSECGLV 33 (309)
Q Consensus 22 ~G~~vC~~CG~V 33 (309)
.|+.+|..||.+
T Consensus 4 ~gDW~C~~C~~~ 15 (33)
T 2k1p_A 4 ANDWQCKTCSNV 15 (33)
T ss_dssp SSSCBCSSSCCB
T ss_pred CCCcccCCCCCc
Confidence 466666666654
Done!