Your job contains 1 sequence.
>psy6534
MNINKVCCYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRV
GGPENPLLNGSDLSTMIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADR
INLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKIS
KKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPG
RSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKLFPQDFVFH
TPIHELPQL
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy6534
(309 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
FB|FBgn0004915 - symbol:TfIIB "Transcription factor IIB" ... 1333 4.1e-136 1
UNIPROTKB|F1NXP2 - symbol:GTF2B "Uncharacterized protein"... 1204 1.9e-122 1
MGI|MGI:2385191 - symbol:Gtf2b "general transcription fac... 1199 6.5e-122 1
RGD|619735 - symbol:Gtf2b "general transcription factor I... 1199 6.5e-122 1
UNIPROTKB|F2Z4J6 - symbol:LOC786656 "Uncharacterized prot... 1198 8.3e-122 1
UNIPROTKB|E2RPG1 - symbol:GTF2B "Uncharacterized protein"... 1198 8.3e-122 1
UNIPROTKB|Q00403 - symbol:GTF2B "Transcription initiation... 1198 8.3e-122 1
UNIPROTKB|Q2KIN8 - symbol:GTF2B "Transcription initiation... 1197 1.1e-121 1
ZFIN|ZDB-GENE-030131-3544 - symbol:gtf2b "general transcr... 1196 1.3e-121 1
UNIPROTKB|F2Z5J6 - symbol:GTF2B "Uncharacterized protein"... 1175 2.3e-119 1
WB|WBGene00006648 - symbol:ttb-1 species:6239 "Caenorhabd... 926 5.5e-93 1
UNIPROTKB|B1APE2 - symbol:GTF2B "Transcription initiation... 899 4.0e-90 1
UNIPROTKB|B1APE1 - symbol:GTF2B "Transcription initiation... 864 2.0e-86 1
DICTYBASE|DDB_G0290929 - symbol:gtf2b "transcription init... 721 2.9e-71 1
TAIR|locus:2062703 - symbol:TFIIB "transcription factor I... 639 1.4e-62 1
TAIR|locus:2076259 - symbol:AT3G10330 species:3702 "Arabi... 618 2.4e-60 1
ASPGD|ASPL0000072123 - symbol:AN4928 species:162425 "Emer... 404 4.7e-48 2
CGD|CAL0001439 - symbol:SUA71 species:5476 "Candida albic... 487 1.8e-46 1
POMBASE|SPAC16E8.16 - symbol:SPAC16E8.16 "transcription f... 472 7.1e-45 1
SGD|S000006290 - symbol:SUA7 "Transcription factor TFIIB"... 456 3.5e-43 1
CGD|CAL0005818 - symbol:SUA72 species:5476 "Candida albic... 396 8.0e-37 1
UNIPROTKB|Q59K82 - symbol:SUA72 "Likely transcription fac... 396 8.0e-37 1
TAIR|locus:2093852 - symbol:pBRP2 "plant-specific TFIIB-r... 352 3.7e-32 1
TAIR|locus:2115255 - symbol:PBRP "plant-specific TFIIB-re... 235 5.1e-19 1
GENEDB_PFALCIPARUM|PFA0525w - symbol:PFA0525w "transcript... 208 2.1e-15 1
UNIPROTKB|Q8I237 - symbol:PFA_0525w "Transcription initia... 208 2.1e-15 1
TAIR|locus:2139227 - symbol:AT4G10680 species:3702 "Arabi... 184 3.1e-14 1
TAIR|locus:2082583 - symbol:AT3G57370 species:3702 "Arabi... 190 6.0e-13 1
SGD|S000003478 - symbol:BRF1 "TFIIIB B-related factor" sp... 170 4.9e-10 1
UNIPROTKB|F1NQ85 - symbol:BRF1 "Uncharacterized protein" ... 151 6.6e-10 2
ZFIN|ZDB-GENE-030131-6334 - symbol:brf1a "BRF1 homolog, s... 163 1.2e-09 2
FB|FBgn0038499 - symbol:Brf "Brf" species:7227 "Drosophil... 152 1.4e-09 2
ZFIN|ZDB-GENE-030131-6248 - symbol:brf1b "BRF1 homolog, s... 154 3.1e-09 2
UNIPROTKB|Q92994 - symbol:BRF1 "Transcription factor IIIB... 143 8.5e-09 2
CGD|CAL0004048 - symbol:BRF1 species:5476 "Candida albica... 156 9.6e-09 2
UNIPROTKB|P43072 - symbol:TDS4 "Transcription factor IIIB... 156 9.6e-09 2
MGI|MGI:1919558 - symbol:Brf1 "BRF1 homolog, subunit of R... 142 1.1e-08 2
POMBASE|SPBC13E7.10c - symbol:brf1 "transcription factor ... 157 1.2e-08 1
DICTYBASE|DDB_G0281215 - symbol:brf1 "transcription facto... 158 1.6e-08 1
UNIPROTKB|F1PRK4 - symbol:BRF1 "Uncharacterized protein" ... 145 3.9e-07 1
UNIPROTKB|G3X7R9 - symbol:G3X7R9 "Uncharacterized protein... 137 3.3e-06 1
UNIPROTKB|E2R245 - symbol:BRF2 "Uncharacterized protein" ... 110 1.4e-05 2
UNIPROTKB|E5RGX1 - symbol:BRF2 "Transcription factor IIIB... 100 1.4e-05 2
UNIPROTKB|Q29S07 - symbol:BRF2 "Transcription factor IIIB... 106 2.0e-05 2
TAIR|locus:2055600 - symbol:AT2G45100 species:3702 "Arabi... 128 2.8e-05 1
UNIPROTKB|F1RX86 - symbol:BRF2 "Uncharacterized protein" ... 100 0.00023 2
UNIPROTKB|Q9HAW0 - symbol:BRF2 "Transcription factor IIIB... 100 0.00024 2
RGD|1308817 - symbol:Brf2 "BRF2, subunit of RNA polymeras... 95 0.00067 2
ASPGD|ASPL0000037776 - symbol:AN3116 species:162425 "Emer... 116 0.00085 1
>FB|FBgn0004915 [details] [associations]
symbol:TfIIB "Transcription factor IIB" species:7227
"Drosophila melanogaster" [GO:0005634 "nucleus" evidence=NAS;IDA]
[GO:0001174 "transcriptional start site selection at RNA polymerase
II promoter" evidence=IDA] [GO:0006357 "regulation of transcription
from RNA polymerase II promoter" evidence=NAS;IDA] [GO:0008134
"transcription factor binding" evidence=IPI] [GO:0051101
"regulation of DNA binding" evidence=IDA] [GO:0005667
"transcription factor complex" evidence=ISS] [GO:0006367
"transcription initiation from RNA polymerase II promoter"
evidence=ISS] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0017025 "TBP-class protein binding" evidence=IEA]
InterPro:IPR000812 InterPro:IPR013137 InterPro:IPR013150
Pfam:PF00382 Pfam:PF08271 PRINTS:PR00685 PROSITE:PS51134
EMBL:AE014134 GO:GO:0046872 GO:GO:0008270 GO:GO:0006357
GO:GO:0005667 Gene3D:1.10.472.10 InterPro:IPR013763 SMART:SM00385
SUPFAM:SSF47954 GO:GO:0051101 eggNOG:COG1405 PANTHER:PTHR11618
PROSITE:PS00782 GO:GO:0001174 KO:K03124 InterPro:IPR023486
GeneTree:ENSGT00390000006671 EMBL:M88164 EMBL:M91081 EMBL:U02879
EMBL:U35148 EMBL:BT011459 EMBL:BT015269 PIR:A42695
RefSeq:NP_476888.1 UniGene:Dm.4476 ProteinModelPortal:P29052
SMR:P29052 DIP:DIP-17603N IntAct:P29052 MINT:MINT-900118
STRING:P29052 PaxDb:P29052 PRIDE:P29052 EnsemblMetazoa:FBtr0080025
EnsemblMetazoa:FBtr0333489 GeneID:34430 KEGG:dme:Dmel_CG5193
CTD:34430 FlyBase:FBgn0004915 InParanoid:P29052 OMA:CNDETER
OrthoDB:EOG4N02WP PhylomeDB:P29052 GenomeRNAi:34430 NextBio:788458
Bgee:P29052 GermOnline:CG5193 Uniprot:P29052
Length = 315
Score = 1333 (474.3 bits), Expect = 4.1e-136, P = 4.1e-136
Identities = 253/306 (82%), Positives = 272/306 (88%)
Query: 4 NKVCCYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGP 63
NKVCCY HP++PLIEDYRAGD ICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGP
Sbjct: 10 NKVCCYAHPESPLIEDYRAGDMICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGP 69
Query: 64 ENPLLNGSDLSTMIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADRINL 123
ENPLL+G DLST+IGPG G ASFD FG KYQNRRTM+SSDR+L++A +EI+SMADRINL
Sbjct: 70 ENPLLSGGDLSTIIGPGTGSASFDAFGAPKYQNRRTMSSSDRSLISAFKEISSMADRINL 129
Query: 124 TKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKE 183
KTIVDRANNLFKQVHDGKNLKGRSNDA ASACLYIACRQEGVPRTFKEICAVSKISKKE
Sbjct: 130 PKTIVDRANNLFKQVHDGKNLKGRSNDAKASACLYIACRQEGVPRTFKEICAVSKISKKE 189
Query: 184 IGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSP 243
IGRCFKL LKALETSVDLITT DFM RFC+NL LPNMVQ+AATHIA+KAVE+DIVPGRSP
Sbjct: 190 IGRCFKLTLKALETSVDLITTADFMCRFCANLDLPNMVQRAATHIAKKAVEMDIVPGRSP 249
Query: 244 IXXXXXXXXXXXXXXXDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKLFPQDFVFHTPI 303
I KRSQKEIGDIAGVA+VTIRQSYKLMYPHA+KLFP+DF F TPI
Sbjct: 250 ISVAAAAIYMASQASEHKRSQKEIGDIAGVADVTIRQSYKLMYPHAAKLFPEDFKFTTPI 309
Query: 304 HELPQL 309
+LPQ+
Sbjct: 310 DQLPQM 315
>UNIPROTKB|F1NXP2 [details] [associations]
symbol:GTF2B "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0006352 "DNA-dependent transcription, initiation"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0017025 "TBP-class protein binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0046966 "thyroid hormone receptor binding"
evidence=IEA] InterPro:IPR000812 InterPro:IPR013137
InterPro:IPR013150 Pfam:PF00382 Pfam:PF08271 PRINTS:PR00685
PROSITE:PS51134 GO:GO:0005634 GO:GO:0006355 GO:GO:0003677
GO:GO:0008270 GO:GO:0006352 Gene3D:1.10.472.10 InterPro:IPR013763
SMART:SM00385 SUPFAM:SSF47954 PANTHER:PTHR11618 PROSITE:PS00782
InterPro:IPR023486 GeneTree:ENSGT00390000006671 OMA:VLRWRKW
EMBL:AADN02012841 IPI:IPI00571339 Ensembl:ENSGALT00000010015
Uniprot:F1NXP2
Length = 306
Score = 1204 (428.9 bits), Expect = 1.9e-122, P = 1.9e-122
Identities = 232/305 (76%), Positives = 257/305 (84%)
Query: 5 KVCCYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPE 64
+V C HPD+ L+EDYRAGD ICSECGLVVGDRVIDVGSEWRTFSN+K+ DPSRVG +
Sbjct: 2 RVTCPNHPDSILVEDYRAGDMICSECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDTQ 61
Query: 65 NPLLNGSDLSTMIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADRINLT 124
NPLL+ DLSTMIG G G ASFD FG SKYQNRRTM+SSDRA++NA +EI +MADRINL
Sbjct: 62 NPLLSDGDLSTMIGKGTGAASFDEFGNSKYQNRRTMSSSDRAMMNAFKEITNMADRINLP 121
Query: 125 KTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEI 184
+ IVDR NNLFKQV++ K+LKGRSNDAIASACLYIACRQEGVPRTFKEICAVS+ISKKEI
Sbjct: 122 RNIVDRTNNLFKQVYEQKSLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSRISKKEI 181
Query: 185 GRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPI 244
GRCFKLILKALETSVDLITTGDFMSRFCSNL LP VQ AATHIARKAVELD+VPGRSPI
Sbjct: 182 GRCFKLILKALETSVDLITTGDFMSRFCSNLGLPKQVQMAATHIARKAVELDLVPGRSPI 241
Query: 245 XXXXXXXXXXXXXXXDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKLFPQDFVFHTPIH 304
+KR+QKEIGDIAGVA+VTIRQSY+L+YP A LFP DF F TP+
Sbjct: 242 SVAAAAIYMASQASAEKRTQKEIGDIAGVADVTIRQSYRLIYPRAPDLFPADFKFDTPVD 301
Query: 305 ELPQL 309
+LPQL
Sbjct: 302 KLPQL 306
>MGI|MGI:2385191 [details] [associations]
symbol:Gtf2b "general transcription factor IIB"
species:10090 "Mus musculus" [GO:0001047 "core promoter binding"
evidence=IDA] [GO:0003677 "DNA binding" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006352 "DNA-dependent transcription, initiation" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0008134 "transcription factor binding"
evidence=ISO] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0017025 "TBP-class protein binding" evidence=IEA] [GO:0046872
"metal ion binding" evidence=IEA] [GO:0046966 "thyroid hormone
receptor binding" evidence=ISO] InterPro:IPR000812
InterPro:IPR013137 InterPro:IPR013150 Pfam:PF00382 Pfam:PF08271
PRINTS:PR00685 PROSITE:PS51134 MGI:MGI:2385191 GO:GO:0005634
GO:GO:0006355 GO:GO:0046872 GO:GO:0008270 GO:GO:0006352
GO:GO:0001047 Gene3D:1.10.472.10 InterPro:IPR013763 SMART:SM00385
SUPFAM:SSF47954 eggNOG:COG1405 PANTHER:PTHR11618 PROSITE:PS00782
HOGENOM:HOG000108634 KO:K03124 OMA:WRAFDPD InterPro:IPR023486
CTD:2959 HOVERGEN:HBG017914 OrthoDB:EOG4QRH4F EMBL:BC016637
IPI:IPI00153874 RefSeq:NP_663521.1 UniGene:Mm.271756
ProteinModelPortal:P62915 SMR:P62915 STRING:P62915
PhosphoSite:P62915 PaxDb:P62915 PRIDE:P62915
Ensembl:ENSMUST00000029938 GeneID:229906 KEGG:mmu:229906
InParanoid:P62915 NextBio:379735 Bgee:P62915 CleanEx:MM_GTF2B
Genevestigator:P62915 GermOnline:ENSMUSG00000028271 Uniprot:P62915
Length = 316
Score = 1199 (427.1 bits), Expect = 6.5e-122, P = 6.5e-122
Identities = 231/305 (75%), Positives = 256/305 (83%)
Query: 5 KVCCYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPE 64
+V C HPDA L+EDYRAGD IC ECGLVVGDRVIDVGSEWRTFSN+K+ DPSRVG +
Sbjct: 12 RVTCPNHPDAILVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDSQ 71
Query: 65 NPLLNGSDLSTMIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADRINLT 124
NPLL+ DLSTMIG G G ASFD FG SKYQNRRTM+SSDRA++NA +EI +MADRINL
Sbjct: 72 NPLLSDGDLSTMIGKGTGAASFDEFGNSKYQNRRTMSSSDRAMMNAFKEITTMADRINLP 131
Query: 125 KTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEI 184
+ IVDR NNLFKQV++ K+LKGR+NDAIASACLYIACRQEGVPRTFKEICAVS+ISKKEI
Sbjct: 132 RNIVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFKEICAVSRISKKEI 191
Query: 185 GRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPI 244
GRCFKLILKALETSVDLITTGDFMSRFCSNL LP VQ AATHIARKAVELD+VPGRSPI
Sbjct: 192 GRCFKLILKALETSVDLITTGDFMSRFCSNLCLPKQVQMAATHIARKAVELDLVPGRSPI 251
Query: 245 XXXXXXXXXXXXXXXDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKLFPQDFVFHTPIH 304
+KR+QKEIGDIAGVA+VTIRQSY+L+YP A LFP DF F TP+
Sbjct: 252 SVAAAAIYMASQASAEKRTQKEIGDIAGVADVTIRQSYRLIYPRAPDLFPSDFKFDTPVD 311
Query: 305 ELPQL 309
+LPQL
Sbjct: 312 KLPQL 316
>RGD|619735 [details] [associations]
symbol:Gtf2b "general transcription factor IIB" species:10116
"Rattus norvegicus" [GO:0001047 "core promoter binding"
evidence=ISO] [GO:0003677 "DNA binding" evidence=IEA;ISO]
[GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0006352 "DNA-dependent
transcription, initiation" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0008134
"transcription factor binding" evidence=ISO] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0017025 "TBP-class protein binding"
evidence=IEA] [GO:0046966 "thyroid hormone receptor binding"
evidence=IEA;ISO] InterPro:IPR000812 InterPro:IPR013137
InterPro:IPR013150 Pfam:PF00382 Pfam:PF08271 PRINTS:PR00685
PROSITE:PS51134 RGD:619735 GO:GO:0005634 GO:GO:0006355
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 GO:GO:0006352
Gene3D:1.10.472.10 InterPro:IPR013763 SMART:SM00385 SUPFAM:SSF47954
eggNOG:COG1405 PANTHER:PTHR11618 PROSITE:PS00782
HOGENOM:HOG000108634 KO:K03124 OMA:WRAFDPD InterPro:IPR023486
CTD:2959 HOVERGEN:HBG017914 OrthoDB:EOG4QRH4F
GeneTree:ENSGT00390000006671 EMBL:X65948 EMBL:BC085345
IPI:IPI00200556 PIR:S26299 RefSeq:NP_112303.1 UniGene:Rn.6109
ProteinModelPortal:P62916 SMR:P62916 IntAct:P62916 STRING:P62916
PRIDE:P62916 Ensembl:ENSRNOT00000015032 GeneID:81673 KEGG:rno:81673
InParanoid:P62916 NextBio:615268 Genevestigator:P62916
Uniprot:P62916
Length = 316
Score = 1199 (427.1 bits), Expect = 6.5e-122, P = 6.5e-122
Identities = 231/305 (75%), Positives = 256/305 (83%)
Query: 5 KVCCYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPE 64
+V C HPDA L+EDYRAGD IC ECGLVVGDRVIDVGSEWRTFSN+K+ DPSRVG +
Sbjct: 12 RVTCPNHPDAILVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDSQ 71
Query: 65 NPLLNGSDLSTMIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADRINLT 124
NPLL+ DLSTMIG G G ASFD FG SKYQNRRTM+SSDRA++NA +EI +MADRINL
Sbjct: 72 NPLLSDGDLSTMIGKGTGAASFDEFGNSKYQNRRTMSSSDRAMMNAFKEITTMADRINLP 131
Query: 125 KTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEI 184
+ IVDR NNLFKQV++ K+LKGR+NDAIASACLYIACRQEGVPRTFKEICAVS+ISKKEI
Sbjct: 132 RNIVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFKEICAVSRISKKEI 191
Query: 185 GRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPI 244
GRCFKLILKALETSVDLITTGDFMSRFCSNL LP VQ AATHIARKAVELD+VPGRSPI
Sbjct: 192 GRCFKLILKALETSVDLITTGDFMSRFCSNLCLPKQVQMAATHIARKAVELDLVPGRSPI 251
Query: 245 XXXXXXXXXXXXXXXDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKLFPQDFVFHTPIH 304
+KR+QKEIGDIAGVA+VTIRQSY+L+YP A LFP DF F TP+
Sbjct: 252 SVAAAAIYMASQASAEKRTQKEIGDIAGVADVTIRQSYRLIYPRAPDLFPSDFKFDTPVD 311
Query: 305 ELPQL 309
+LPQL
Sbjct: 312 KLPQL 316
>UNIPROTKB|F2Z4J6 [details] [associations]
symbol:LOC786656 "Uncharacterized protein" species:9913
"Bos taurus" [GO:0046966 "thyroid hormone receptor binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0017025 "TBP-class protein binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006352 "DNA-dependent transcription, initiation"
evidence=IEA] InterPro:IPR000812 InterPro:IPR013137
InterPro:IPR013150 Pfam:PF00382 Pfam:PF08271 PRINTS:PR00685
PROSITE:PS51134 GO:GO:0005634 GO:GO:0006355 GO:GO:0003677
GO:GO:0008270 GO:GO:0006352 Gene3D:1.10.472.10 InterPro:IPR013763
SMART:SM00385 SUPFAM:SSF47954 PANTHER:PTHR11618 PROSITE:PS00782
OMA:WRAFDPD InterPro:IPR023486 IPI:IPI00697087 UniGene:Bt.39806
GeneTree:ENSGT00390000006671 EMBL:DAAA02007976
ProteinModelPortal:F2Z4J6 SMR:F2Z4J6 PRIDE:F2Z4J6
Ensembl:ENSBTAT00000044137 Uniprot:F2Z4J6
Length = 316
Score = 1198 (426.8 bits), Expect = 8.3e-122, P = 8.3e-122
Identities = 231/305 (75%), Positives = 256/305 (83%)
Query: 5 KVCCYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPE 64
+V C HPDA L+EDYRAGD IC ECGLVVGDRVIDVGSEWRTFSN+K+ DPSRVG +
Sbjct: 12 RVTCPNHPDAILVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDSQ 71
Query: 65 NPLLNGSDLSTMIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADRINLT 124
NPLL+ DLSTMIG G G ASFD FG SKYQNRRTM+SSDRA++NA +EI +MADRINL
Sbjct: 72 NPLLSDGDLSTMIGKGTGAASFDEFGNSKYQNRRTMSSSDRAMMNAFKEITTMADRINLP 131
Query: 125 KTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEI 184
+ IVDR NNLFKQV++ K+LKGR+NDAIASACLYIACRQEGVPRTFKEICAVS+ISKKEI
Sbjct: 132 RNIVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFKEICAVSRISKKEI 191
Query: 185 GRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPI 244
GRCFKLILKALETSVDLITTGDFMSRFCSNL LP VQ AATHIARKAVELD+VPGRSPI
Sbjct: 192 GRCFKLILKALETSVDLITTGDFMSRFCSNLCLPKQVQMAATHIARKAVELDLVPGRSPI 251
Query: 245 XXXXXXXXXXXXXXXDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKLFPQDFVFHTPIH 304
+KR+QKEIGDIAGVA+VTIRQSY+L+YP A LFP DF F TP+
Sbjct: 252 SVAAAAIYMASQASAEKRTQKEIGDIAGVADVTIRQSYRLIYPRAPDLFPTDFKFDTPVD 311
Query: 305 ELPQL 309
+LPQL
Sbjct: 312 KLPQL 316
>UNIPROTKB|E2RPG1 [details] [associations]
symbol:GTF2B "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0046966 "thyroid hormone receptor binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0017025 "TBP-class protein binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006352 "DNA-dependent transcription, initiation"
evidence=IEA] InterPro:IPR000812 InterPro:IPR013137
InterPro:IPR013150 Pfam:PF00382 Pfam:PF08271 PRINTS:PR00685
PROSITE:PS51134 GO:GO:0005634 GO:GO:0006355 GO:GO:0003677
GO:GO:0008270 GO:GO:0006352 Gene3D:1.10.472.10 InterPro:IPR013763
SMART:SM00385 SUPFAM:SSF47954 PANTHER:PTHR11618 PROSITE:PS00782
KO:K03124 OMA:WRAFDPD InterPro:IPR023486 CTD:2959
GeneTree:ENSGT00390000006671 EMBL:AAEX03004837 RefSeq:XP_537085.1
ProteinModelPortal:E2RPG1 SMR:E2RPG1 PRIDE:E2RPG1
Ensembl:ENSCAFT00000032192 GeneID:479960 KEGG:cfa:479960
NextBio:20855065 Uniprot:E2RPG1
Length = 316
Score = 1198 (426.8 bits), Expect = 8.3e-122, P = 8.3e-122
Identities = 231/305 (75%), Positives = 256/305 (83%)
Query: 5 KVCCYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPE 64
+V C HPDA L+EDYRAGD IC ECGLVVGDRVIDVGSEWRTFSN+K+ DPSRVG +
Sbjct: 12 RVTCPNHPDAILVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDSQ 71
Query: 65 NPLLNGSDLSTMIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADRINLT 124
NPLL+ DLSTMIG G G ASFD FG SKYQNRRTM+SSDRA++NA +EI +MADRINL
Sbjct: 72 NPLLSDGDLSTMIGKGTGAASFDEFGNSKYQNRRTMSSSDRAMMNAFKEITTMADRINLP 131
Query: 125 KTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEI 184
+ IVDR NNLFKQV++ K+LKGR+NDAIASACLYIACRQEGVPRTFKEICAVS+ISKKEI
Sbjct: 132 RNIVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFKEICAVSRISKKEI 191
Query: 185 GRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPI 244
GRCFKLILKALETSVDLITTGDFMSRFCSNL LP VQ AATHIARKAVELD+VPGRSPI
Sbjct: 192 GRCFKLILKALETSVDLITTGDFMSRFCSNLCLPKQVQMAATHIARKAVELDLVPGRSPI 251
Query: 245 XXXXXXXXXXXXXXXDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKLFPQDFVFHTPIH 304
+KR+QKEIGDIAGVA+VTIRQSY+L+YP A LFP DF F TP+
Sbjct: 252 SVAAAAIYMASQASAEKRTQKEIGDIAGVADVTIRQSYRLIYPRAPDLFPTDFKFDTPVD 311
Query: 305 ELPQL 309
+LPQL
Sbjct: 312 KLPQL 316
>UNIPROTKB|Q00403 [details] [associations]
symbol:GTF2B "Transcription initiation factor IIB"
species:9606 "Homo sapiens" [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0017025 "TBP-class protein binding" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0019048 "virus-host interaction" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0046966 "thyroid hormone receptor
binding" evidence=IPI] [GO:0008134 "transcription factor binding"
evidence=IPI] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=TAS]
[GO:0006367 "transcription initiation from RNA polymerase II
promoter" evidence=TAS] [GO:0006368 "transcription elongation from
RNA polymerase II promoter" evidence=TAS] [GO:0010467 "gene
expression" evidence=TAS] [GO:0016032 "viral reproduction"
evidence=TAS] Reactome:REACT_71 InterPro:IPR000812
InterPro:IPR013137 InterPro:IPR013150 Pfam:PF00382 Pfam:PF08271
PRINTS:PR00685 PROSITE:PS51134 Reactome:REACT_116125 GO:GO:0019048
GO:GO:0005654 GO:GO:0016032 GO:GO:0006355 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0006368 GO:GO:0006367
Gene3D:1.10.472.10 InterPro:IPR013763 SMART:SM00385 SUPFAM:SSF47954
Reactome:REACT_1788 eggNOG:COG1405 PANTHER:PTHR11618
PROSITE:PS00782 EMBL:AL445991 PDB:1VOL PDBsum:1VOL PDB:1C9B
PDBsum:1C9B HOGENOM:HOG000108634 KO:K03124 OMA:WRAFDPD
InterPro:IPR023486 CTD:2959 HOVERGEN:HBG017914 OrthoDB:EOG4QRH4F
EMBL:X59268 EMBL:M76766 EMBL:AK289822 EMBL:AB451296 EMBL:BC020597
EMBL:S44184 IPI:IPI00022820 PIR:S17654 RefSeq:NP_001505.1
UniGene:Hs.481852 PDB:1DL6 PDB:1RLY PDB:1RO4 PDB:1TFB PDB:2PHG
PDBsum:1DL6 PDBsum:1RLY PDBsum:1RO4 PDBsum:1TFB PDBsum:2PHG
ProteinModelPortal:Q00403 SMR:Q00403 DIP:DIP-1077N IntAct:Q00403
MINT:MINT-156550 STRING:Q00403 PhosphoSite:Q00403 DMDM:135629
PaxDb:Q00403 PeptideAtlas:Q00403 PRIDE:Q00403 DNASU:2959
Ensembl:ENST00000370500 GeneID:2959 KEGG:hsa:2959 UCSC:uc001dmo.4
GeneCards:GC01M089318 HGNC:HGNC:4648 MIM:189963 neXtProt:NX_Q00403
PharmGKB:PA29035 InParanoid:Q00403 PhylomeDB:Q00403 ChiTaRS:GTF2B
EvolutionaryTrace:Q00403 GenomeRNAi:2959 NextBio:11730
PMAP-CutDB:Q00403 ArrayExpress:Q00403 Bgee:Q00403 CleanEx:HS_GTF2B
Genevestigator:Q00403 GermOnline:ENSG00000137947 Uniprot:Q00403
Length = 316
Score = 1198 (426.8 bits), Expect = 8.3e-122, P = 8.3e-122
Identities = 231/305 (75%), Positives = 256/305 (83%)
Query: 5 KVCCYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPE 64
+V C HPDA L+EDYRAGD IC ECGLVVGDRVIDVGSEWRTFSN+K+ DPSRVG +
Sbjct: 12 RVTCPNHPDAILVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDSQ 71
Query: 65 NPLLNGSDLSTMIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADRINLT 124
NPLL+ DLSTMIG G G ASFD FG SKYQNRRTM+SSDRA++NA +EI +MADRINL
Sbjct: 72 NPLLSDGDLSTMIGKGTGAASFDEFGNSKYQNRRTMSSSDRAMMNAFKEITTMADRINLP 131
Query: 125 KTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEI 184
+ IVDR NNLFKQV++ K+LKGR+NDAIASACLYIACRQEGVPRTFKEICAVS+ISKKEI
Sbjct: 132 RNIVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFKEICAVSRISKKEI 191
Query: 185 GRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPI 244
GRCFKLILKALETSVDLITTGDFMSRFCSNL LP VQ AATHIARKAVELD+VPGRSPI
Sbjct: 192 GRCFKLILKALETSVDLITTGDFMSRFCSNLCLPKQVQMAATHIARKAVELDLVPGRSPI 251
Query: 245 XXXXXXXXXXXXXXXDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKLFPQDFVFHTPIH 304
+KR+QKEIGDIAGVA+VTIRQSY+L+YP A LFP DF F TP+
Sbjct: 252 SVAAAAIYMASQASAEKRTQKEIGDIAGVADVTIRQSYRLIYPRAPDLFPTDFKFDTPVD 311
Query: 305 ELPQL 309
+LPQL
Sbjct: 312 KLPQL 316
>UNIPROTKB|Q2KIN8 [details] [associations]
symbol:GTF2B "Transcription initiation factor IIB"
species:9913 "Bos taurus" [GO:0005634 "nucleus" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0017025 "TBP-class protein binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0006352
"DNA-dependent transcription, initiation" evidence=IEA]
InterPro:IPR000812 InterPro:IPR013137 InterPro:IPR013150
Pfam:PF00382 Pfam:PF08271 PRINTS:PR00685 PROSITE:PS51134
GO:GO:0005634 GO:GO:0006355 GO:GO:0046872 GO:GO:0008270
GO:GO:0006352 Gene3D:1.10.472.10 InterPro:IPR013763 SMART:SM00385
SUPFAM:SSF47954 eggNOG:COG1405 PANTHER:PTHR11618 PROSITE:PS00782
HOGENOM:HOG000108634 KO:K03124 InterPro:IPR023486 EMBL:BC112570
IPI:IPI00697087 RefSeq:NP_001039607.1 UniGene:Bt.39806
ProteinModelPortal:Q2KIN8 SMR:Q2KIN8 STRING:Q2KIN8 PRIDE:Q2KIN8
GeneID:513231 KEGG:bta:513231 CTD:2959 HOVERGEN:HBG017914
InParanoid:Q2KIN8 OrthoDB:EOG4QRH4F NextBio:20870763 Uniprot:Q2KIN8
Length = 316
Score = 1197 (426.4 bits), Expect = 1.1e-121, P = 1.1e-121
Identities = 231/305 (75%), Positives = 256/305 (83%)
Query: 5 KVCCYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPE 64
+V C HPDA L+EDYRAGD IC ECGLVVGDRVIDVGSEWRTFSN+K+ DPSRVG +
Sbjct: 12 RVTCPNHPDAILVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDSQ 71
Query: 65 NPLLNGSDLSTMIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADRINLT 124
NPLL+ DLSTMIG G G ASFD FG SKYQNRRTM+SSDRA++NA +EI +MADRINL
Sbjct: 72 NPLLSDGDLSTMIGKGTGAASFDEFGNSKYQNRRTMSSSDRAMMNAFKEITTMADRINLP 131
Query: 125 KTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEI 184
+ IVDR NNLFKQV++ K+LKGR+NDAIASACLYIACRQEGVPRTFKEICAVS+ISKKEI
Sbjct: 132 RNIVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFKEICAVSRISKKEI 191
Query: 185 GRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPI 244
GRCFKLILKALETSVDLITTGDFMSRFCSNL LP VQ AATHIARKAVELD+VPGRSPI
Sbjct: 192 GRCFKLILKALETSVDLITTGDFMSRFCSNLCLPKQVQMAATHIARKAVELDLVPGRSPI 251
Query: 245 XXXXXXXXXXXXXXXDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKLFPQDFVFHTPIH 304
+KR+QKEIGDIAGVA+VTIRQSY+L+YP A LFP DF F TP+
Sbjct: 252 SVAEAAIYMASQASAEKRTQKEIGDIAGVADVTIRQSYRLIYPRAPDLFPTDFKFDTPVD 311
Query: 305 ELPQL 309
+LPQL
Sbjct: 312 KLPQL 316
>ZFIN|ZDB-GENE-030131-3544 [details] [associations]
symbol:gtf2b "general transcription factor IIB"
species:7955 "Danio rerio" [GO:0006352 "DNA-dependent
transcription, initiation" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0017025 "TBP-class protein
binding" evidence=IEA] InterPro:IPR000812 InterPro:IPR013137
InterPro:IPR013150 Pfam:PF00382 Pfam:PF08271 PRINTS:PR00685
PROSITE:PS51134 ZFIN:ZDB-GENE-030131-3544 GO:GO:0006355
GO:GO:0008270 GO:GO:0006352 Gene3D:1.10.472.10 InterPro:IPR013763
SMART:SM00385 SUPFAM:SSF47954 PANTHER:PTHR11618 PROSITE:PS00782
KO:K03124 InterPro:IPR023486 CTD:2959 HOVERGEN:HBG017914
HSSP:Q00403 EMBL:BC055569 IPI:IPI00501186 RefSeq:NP_955991.1
UniGene:Dr.78599 ProteinModelPortal:Q7SX98 SMR:Q7SX98 STRING:Q7SX98
GeneID:324823 KEGG:dre:324823 NextBio:20808979 ArrayExpress:Q7SX98
Uniprot:Q7SX98
Length = 316
Score = 1196 (426.1 bits), Expect = 1.3e-121, P = 1.3e-121
Identities = 231/308 (75%), Positives = 258/308 (83%)
Query: 2 NINKVCCYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVG 61
++ KV C HPDA L+EDYRAGD IC ECGLVV DRVIDVGSEWRTFSNEK+ DPSRVG
Sbjct: 9 SLPKVQCPNHPDALLVEDYRAGDMICPECGLVVRDRVIDVGSEWRTFSNEKATKDPSRVG 68
Query: 62 GPENPLLNGSDLSTMIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADRI 121
+NPLLNG DL+TMI G G ASFD FG SKYQNRRTM+SSDRA+LNA +EI +MADRI
Sbjct: 69 DAQNPLLNGGDLTTMISKGTGAASFDEFGNSKYQNRRTMSSSDRAMLNAFKEITTMADRI 128
Query: 122 NLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISK 181
NL + I+DR NNLFKQV++ K+LKGRSNDAIASACLYIACRQEGVPRTFKEICAVS+ISK
Sbjct: 129 NLPRNIIDRTNNLFKQVYEQKSLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSRISK 188
Query: 182 KEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGR 241
KEIGRCFKLILKALETSVDLITTGDFMSRFCSNL LP VQ AAT+IARKAVELD+VPGR
Sbjct: 189 KEIGRCFKLILKALETSVDLITTGDFMSRFCSNLGLPKQVQMAATYIARKAVELDLVPGR 248
Query: 242 SPIXXXXXXXXXXXXXXXDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKLFPQDFVFHT 301
SPI +K++QKEIGDIAGVA+VTIRQSY+L+YP A+ LFP DF F T
Sbjct: 249 SPISVAAAAIYMASQASAEKKTQKEIGDIAGVADVTIRQSYRLIYPRAADLFPPDFKFDT 308
Query: 302 PIHELPQL 309
P+ +LPQL
Sbjct: 309 PVDKLPQL 316
>UNIPROTKB|F2Z5J6 [details] [associations]
symbol:GTF2B "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0046966 "thyroid hormone receptor binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0017025 "TBP-class protein binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006352 "DNA-dependent transcription, initiation"
evidence=IEA] InterPro:IPR000812 InterPro:IPR013137
InterPro:IPR013150 Pfam:PF00382 Pfam:PF08271 PRINTS:PR00685
PROSITE:PS51134 GO:GO:0005634 GO:GO:0006355 GO:GO:0003677
GO:GO:0008270 GO:GO:0006352 Gene3D:1.10.472.10 InterPro:IPR013763
SMART:SM00385 SUPFAM:SSF47954 PANTHER:PTHR11618 PROSITE:PS00782
InterPro:IPR023486 GeneTree:ENSGT00390000006671 OMA:VLRWRKW
EMBL:CU179630 EMBL:CU151869 Ensembl:ENSSSCT00000007587
Uniprot:F2Z5J6
Length = 316
Score = 1175 (418.7 bits), Expect = 2.3e-119, P = 2.3e-119
Identities = 227/305 (74%), Positives = 253/305 (82%)
Query: 5 KVCCYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPE 64
+V C HPDA L+EDYRAGD IC ECGLVVGDRVIDVGSEWRTFSN+K+ DPSRVG +
Sbjct: 12 RVTCPNHPDAILVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDSQ 71
Query: 65 NPLLNGSDLSTMIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADRINLT 124
NPLL+ DLSTMIG G G ASFD FG SKYQNRRTM+SSDRA++NA +EI +MADRINL
Sbjct: 72 NPLLSDGDLSTMIGKGTGAASFDEFGNSKYQNRRTMSSSDRAMMNAFKEITTMADRINLP 131
Query: 125 KTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEI 184
+ IVDR NNLFKQV++ K+LKGR+NDAIASACLYIACRQEGVPRTFKEICAVS+ISKKEI
Sbjct: 132 RNIVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFKEICAVSRISKKEI 191
Query: 185 GRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPI 244
GRCFKLILKALETSVDLITTGDFMSRFCSNL LP VQ AATHIARKAVELD+VPGRSPI
Sbjct: 192 GRCFKLILKALETSVDLITTGDFMSRFCSNLCLPKQVQMAATHIARKAVELDLVPGRSPI 251
Query: 245 XXXXXXXXXXXXXXXDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKLFPQDFVFHTPIH 304
+KR+QKEI + GVA+VTIRQSY+L+YP A LFP DF F TP+
Sbjct: 252 SVAAAAIYMASQASAEKRTQKEILSLQGVADVTIRQSYRLIYPRAPDLFPTDFKFDTPVD 311
Query: 305 ELPQL 309
+LPQL
Sbjct: 312 KLPQL 316
>WB|WBGene00006648 [details] [associations]
symbol:ttb-1 species:6239 "Caenorhabditis elegans"
[GO:0006352 "DNA-dependent transcription, initiation" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0017025 "TBP-class protein binding" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
InterPro:IPR000812 InterPro:IPR013137 InterPro:IPR013150
Pfam:PF00382 Pfam:PF08271 PRINTS:PR00685 PROSITE:PS51134
GO:GO:0005634 GO:GO:0009792 GO:GO:0006355 GO:GO:0046872
GO:GO:0008270 GO:GO:0006352 Gene3D:1.10.472.10 InterPro:IPR013763
SMART:SM00385 SUPFAM:SSF47954 eggNOG:COG1405 PANTHER:PTHR11618
PROSITE:PS00782 HOGENOM:HOG000108634 KO:K03124 OMA:WRAFDPD
InterPro:IPR023486 EMBL:FO081767 RefSeq:NP_503146.1
ProteinModelPortal:O16991 SMR:O16991 STRING:O16991 PaxDb:O16991
EnsemblMetazoa:W03F9.5.1 EnsemblMetazoa:W03F9.5.2
EnsemblMetazoa:W03F9.5.3 GeneID:178544 KEGG:cel:CELE_W03F9.5
UCSC:W03F9.5.1 CTD:178544 WormBase:W03F9.5
GeneTree:ENSGT00390000006671 InParanoid:O16991 NextBio:901568
Uniprot:O16991
Length = 306
Score = 926 (331.0 bits), Expect = 5.5e-93, P = 5.5e-93
Identities = 175/302 (57%), Positives = 230/302 (76%)
Query: 6 VCCYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPEN 65
V C HPD LIED+RAGD +C CGLVVGDR++DVG+EWR+FSNE+SG DPSRVG PEN
Sbjct: 5 VQCPIHPDVHLIEDHRAGDLVCPACGLVVGDRLVDVGTEWRSFSNERSGNDPSRVGAPEN 64
Query: 66 PLLNGSDLSTMIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADRINLTK 125
PLL+G DLST I G G + D ++ Q R++MN++DR + A+ I M++RI+L +
Sbjct: 65 PLLSGGDLSTTIAVGFGGSDSDN-SLANAQ-RKSMNNTDRQMTAAMSLIREMSERIHLPR 122
Query: 126 TIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIG 185
I D A+ +FK V + K L+G++N+A A+ACLYIACR++GVPRTFKEICAVS++SKKEIG
Sbjct: 123 NIQDSASRIFKDVLESKALRGKNNEAQAAACLYIACRKDGVPRTFKEICAVSRVSKKEIG 182
Query: 186 RCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPIX 245
RCFK+I+++LET+++ IT+ DFMSRFC NLSLPN +Q AAT IA+ AV++D+V GR+PI
Sbjct: 183 RCFKIIVRSLETNLEQITSADFMSRFCGNLSLPNSIQAAATRIAKCAVDMDLVAGRTPIS 242
Query: 246 XXXXXXXXXXXXXXDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKLFPQDFVFHTPIHE 305
+KRS KEIGD+AG AE+T+RQ+YKL+YP A +LFP+DF F TPI
Sbjct: 243 IAAAAIYMASQASAEKRSAKEIGDVAGAAEITVRQTYKLLYPKALELFPKDFRFVTPIDA 302
Query: 306 LP 307
LP
Sbjct: 303 LP 304
>UNIPROTKB|B1APE2 [details] [associations]
symbol:GTF2B "Transcription initiation factor IIB"
species:9606 "Homo sapiens" [GO:0006352 "DNA-dependent
transcription, initiation" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0017025 "TBP-class protein binding"
evidence=IEA] InterPro:IPR000812 InterPro:IPR013137
InterPro:IPR013150 Pfam:PF00382 Pfam:PF08271 PRINTS:PR00685
PROSITE:PS51134 GO:GO:0006355 GO:GO:0008270 GO:GO:0006352
Gene3D:1.10.472.10 InterPro:IPR013763 SMART:SM00385 SUPFAM:SSF47954
PANTHER:PTHR11618 PROSITE:PS00782 EMBL:AL445991
HOGENOM:HOG000108634 InterPro:IPR023486 HOVERGEN:HBG017914
UniGene:Hs.481852 HGNC:HGNC:4648 ChiTaRS:GTF2B IPI:IPI00643006
SMR:B1APE2 STRING:B1APE2 Ensembl:ENST00000418217 Uniprot:B1APE2
Length = 231
Score = 899 (321.5 bits), Expect = 4.0e-90, P = 4.0e-90
Identities = 176/225 (78%), Positives = 193/225 (85%)
Query: 5 KVCCYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPE 64
+V C HPDA L+EDYRAGD IC EC DRVIDVGSEWRTFSN+K+ DPSRVG +
Sbjct: 12 RVTCPNHPDAILVEDYRAGDMICPEC-----DRVIDVGSEWRTFSNDKATKDPSRVGDSQ 66
Query: 65 NPLLNGSDLSTMIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADRINLT 124
NPLL+ DLSTMIG G G ASFD FG SKYQNRRTM+SSDRA++NA +EI +MADRINL
Sbjct: 67 NPLLSDGDLSTMIGKGTGAASFDEFGNSKYQNRRTMSSSDRAMMNAFKEITTMADRINLP 126
Query: 125 KTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEI 184
+ IVDR NNLFKQV++ K+LKGR+NDAIASACLYIACRQEGVPRTFKEICAVS+ISKKEI
Sbjct: 127 RNIVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFKEICAVSRISKKEI 186
Query: 185 GRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIA 229
GRCFKLILKALETSVDLITTGDFMSRFCSNL LP VQ AATHIA
Sbjct: 187 GRCFKLILKALETSVDLITTGDFMSRFCSNLCLPKQVQMAATHIA 231
>UNIPROTKB|B1APE1 [details] [associations]
symbol:GTF2B "Transcription initiation factor IIB"
species:9606 "Homo sapiens" [GO:0006352 "DNA-dependent
transcription, initiation" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0017025 "TBP-class protein binding"
evidence=IEA] InterPro:IPR000812 InterPro:IPR013137
InterPro:IPR013150 Pfam:PF00382 Pfam:PF08271 PRINTS:PR00685
PROSITE:PS51134 GO:GO:0006355 GO:GO:0008270 GO:GO:0006352
Gene3D:1.10.472.10 InterPro:IPR013763 SMART:SM00385 SUPFAM:SSF47954
PANTHER:PTHR11618 PROSITE:PS00782 EMBL:AL445991
HOGENOM:HOG000108634 InterPro:IPR023486 HOVERGEN:HBG017914
UniGene:Hs.481852 HGNC:HGNC:4648 ChiTaRS:GTF2B IPI:IPI00643469
SMR:B1APE1 STRING:B1APE1 Ensembl:ENST00000448623 Uniprot:B1APE1
Length = 224
Score = 864 (309.2 bits), Expect = 2.0e-86, P = 2.0e-86
Identities = 166/206 (80%), Positives = 183/206 (88%)
Query: 5 KVCCYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPE 64
+V C HPDA L+EDYRAGD IC ECGLVVGDRVIDVGSEWRTFSN+K+ DPSRVG +
Sbjct: 11 RVTCPNHPDAILVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDSQ 70
Query: 65 NPLLNGSDLSTMIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADRINLT 124
NPLL+ DLSTMIG G G ASFD FG SKYQNRRTM+SSDRA++NA +EI +MADRINL
Sbjct: 71 NPLLSDGDLSTMIGKGTGAASFDEFGNSKYQNRRTMSSSDRAMMNAFKEITTMADRINLP 130
Query: 125 KTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEI 184
+ IVDR NNLFKQV++ K+LKGR+NDAIASACLYIACRQEGVPRTFKEICAVS+ISKKEI
Sbjct: 131 RNIVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFKEICAVSRISKKEI 190
Query: 185 GRCFKLILKALETSVDLITTGDFMSR 210
GRCFKLILKALETSVDLITTGDFMSR
Sbjct: 191 GRCFKLILKALETSVDLITTGDFMSR 216
>DICTYBASE|DDB_G0290929 [details] [associations]
symbol:gtf2b "transcription initiation factor IIB"
species:44689 "Dictyostelium discoideum" [GO:0017025 "TBP-class
protein binding" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006352 "DNA-dependent
transcription, initiation" evidence=IEA] [GO:0051123 "RNA
polymerase II transcriptional preinitiation complex assembly"
evidence=ISS] [GO:0006367 "transcription initiation from RNA
polymerase II promoter" evidence=ISS] [GO:0005654 "nucleoplasm"
evidence=ISS] [GO:0001139 "core RNA polymerase II recruiting
transcription factor activity" evidence=ISS] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000812 InterPro:IPR013137 InterPro:IPR013150
Pfam:PF00382 Pfam:PF08271 PRINTS:PR00685 PROSITE:PS51134
dictyBase:DDB_G0290929 GO:GO:0005654 GO:GO:0006355 GO:GO:0046872
GO:GO:0008270 GenomeReviews:CM000154_GR Gene3D:1.10.472.10
InterPro:IPR013763 SMART:SM00385 SUPFAM:SSF47954 eggNOG:COG1405
PANTHER:PTHR11618 PROSITE:PS00782 EMBL:AAFI02000172 GO:GO:0001139
KO:K03124 InterPro:IPR023486 RefSeq:XP_635486.1 HSSP:Q00403
ProteinModelPortal:Q54FD6 SMR:Q54FD6 STRING:Q54FD6
EnsemblProtists:DDB0216283 GeneID:8627902 KEGG:ddi:DDB_G0290929
OMA:VTIRNAY Uniprot:Q54FD6
Length = 325
Score = 721 (258.9 bits), Expect = 2.9e-71, P = 2.9e-71
Identities = 144/305 (47%), Positives = 201/305 (65%)
Query: 6 VCCYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSN-EKSGVDPSRVGGPE 64
VC + PD +IEDY GD IC CG+VVGDR++D SEWRTFSN E +G DP+RVGGP
Sbjct: 25 VCRIQDPD--IIEDYAKGDLICRGCGVVVGDRIVDEHSEWRTFSNSESTGADPNRVGGPI 82
Query: 65 NPLLNGSDLSTMIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADRINLT 124
NPLL S LST +G G D+ +++ QN+ + + DR LL A +EI MAD +NL
Sbjct: 83 NPLLRDSALSTTVGKGSKDSGT----LTRLQNKSALGTGDRNLLAAFKEIGRMADHMNLP 138
Query: 125 KTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEI 184
+T+ DRAN LF+ + D K+ KGRS D + +A LYIACRQE + RTFKEI A++ + KKEI
Sbjct: 139 QTVQDRANELFRFMDDKKSTKGRSVDGMVAAALYIACRQEHLSRTFKEIAALTNVPKKEI 198
Query: 185 GRCFKLILKALETSVDL--ITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRS 242
RC+K++ + + ++L I++ DF SRFCS L LPN V+K A H+++ A+++ IV G+S
Sbjct: 199 SRCYKIMKETFASVLNLQTISSEDFTSRFCSTLKLPNDVKKGAEHVSKMAMDMGIVAGKS 258
Query: 243 PIXXXXXXXXXXXXXXXDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKLFPQDFVFHTP 302
PI +KR+QK+I D++GV+EVTIR +YK +Y +L P D + +
Sbjct: 259 PISVTAASIYMVSQLSPEKRTQKQIADVSGVSEVTIRNAYKDLYAKRDQLIPSDSPYFSQ 318
Query: 303 IHELP 307
+ LP
Sbjct: 319 VQYLP 323
>TAIR|locus:2062703 [details] [associations]
symbol:TFIIB "transcription factor IIB" species:3702
"Arabidopsis thaliana" [GO:0003743 "translation initiation factor
activity" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM]
[GO:0006352 "DNA-dependent transcription, initiation" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA;ISS] [GO:0006413 "translational initiation"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0000394 "RNA splicing, via endonucleolytic cleavage and
ligation" evidence=RCA] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=RCA] InterPro:IPR000812
InterPro:IPR013137 InterPro:IPR013150 Pfam:PF00382 Pfam:PF08271
PRINTS:PR00685 PROSITE:PS51134 GO:GO:0005634 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0006355 GO:GO:0046872 GO:GO:0008270
GO:GO:0006352 EMBL:AC002510 Gene3D:1.10.472.10 InterPro:IPR013763
SMART:SM00385 SUPFAM:SSF47954 eggNOG:COG1405 PANTHER:PTHR11618
PROSITE:PS00782 EMBL:U31096 EMBL:AY093060 EMBL:AY128769
EMBL:AY086647 IPI:IPI00524047 PIR:T00819 RefSeq:NP_181694.1
UniGene:At.10174 ProteinModelPortal:P48512 SMR:P48512 IntAct:P48512
STRING:P48512 PaxDb:P48512 PRIDE:P48512 EnsemblPlants:AT2G41630.1
GeneID:818761 KEGG:ath:AT2G41630 TAIR:At2g41630
HOGENOM:HOG000108634 InParanoid:P48512 KO:K03124 OMA:WRAFDPD
PhylomeDB:P48512 ProtClustDB:CLSN2683788 Genevestigator:P48512
InterPro:IPR023486 Uniprot:P48512
Length = 312
Score = 639 (230.0 bits), Expect = 1.4e-62, P = 1.4e-62
Identities = 139/290 (47%), Positives = 180/290 (62%)
Query: 13 DAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSD 72
+ L+ D+ AGD +CSECGLV+ ID SEWRTF+NE S DP+RVGGP NPLL S
Sbjct: 12 ETELVVDHSAGDTLCSECGLVLESHSIDETSEWRTFANESSNSDPNRVGGPTNPLLADSA 71
Query: 73 LSTMIG-PGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADRINLTKTIVDRA 131
L+T+I P F + ++QNR + +SDR L+ A + I +M++R+ L TI DRA
Sbjct: 72 LTTVIAKPNGSSGDFLSSSLGRWQNRNS--NSDRGLIQAFKTIATMSERLGLVATIKDRA 129
Query: 132 NNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSK-ISKKEIGRCFKL 190
N L+K++ D K+ +GR+ DA+ +ACLYIACRQE PRT KEIC ++ +KKEIGR
Sbjct: 130 NELYKRLEDQKSSRGRNQDALYAACLYIACRQEDKPRTIKEICVIANGATKKEIGRAKDY 189
Query: 191 ILKALET----SVDL--ITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPI 244
I+K L SVDL I GDFM RFCSNL++ N KAA +K+ E DI RSPI
Sbjct: 190 IVKTLGLEPGQSVDLGTIHAGDFMRRFCSNLAMSNHAVKAAQEAVQKSEEFDI--RRSPI 247
Query: 245 XXXXXXXXXXXXXXXDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKLFP 294
DK++ K+I GVAE TIR SYK +YPH SK+ P
Sbjct: 248 SIAAVVIYIITQLSDDKKTLKDISHATGVAEGTIRNSYKDLYPHLSKIAP 297
>TAIR|locus:2076259 [details] [associations]
symbol:AT3G10330 species:3702 "Arabidopsis thaliana"
[GO:0003743 "translation initiation factor activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM;IDA] [GO:0006352 "DNA-dependent
transcription, initiation" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA;ISS] [GO:0006413
"translational initiation" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0000394 "RNA splicing, via endonucleolytic cleavage and
ligation" evidence=RCA] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=RCA] InterPro:IPR000812
InterPro:IPR013137 InterPro:IPR013150 Pfam:PF00382 Pfam:PF08271
PRINTS:PR00685 PROSITE:PS51134 GO:GO:0005634 GO:GO:0005737
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0006355 GO:GO:0046872
GO:GO:0008270 GO:GO:0006352 Gene3D:1.10.472.10 InterPro:IPR013763
SMART:SM00385 SUPFAM:SSF47954 eggNOG:COG1405 PANTHER:PTHR11618
PROSITE:PS00782 EMBL:AC009400 HOGENOM:HOG000108634 KO:K03124
ProtClustDB:CLSN2683788 InterPro:IPR023486 EMBL:AY050421
EMBL:AY060526 EMBL:AY087850 EMBL:Z34661 IPI:IPI00519983
RefSeq:NP_187644.1 UniGene:At.199 ProteinModelPortal:Q9SS44
SMR:Q9SS44 STRING:Q9SS44 PaxDb:Q9SS44 PRIDE:Q9SS44
EnsemblPlants:AT3G10330.1 GeneID:820195 KEGG:ath:AT3G10330
TAIR:At3g10330 InParanoid:Q9SS44 OMA:SNDDQNG PhylomeDB:Q9SS44
Genevestigator:Q9SS44 Uniprot:Q9SS44
Length = 312
Score = 618 (222.6 bits), Expect = 2.4e-60, P = 2.4e-60
Identities = 137/295 (46%), Positives = 179/295 (60%)
Query: 8 CYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPL 67
C H + ++ D+ AGD +CSECGLV+ ID SEWRTF+NE DP RVGGP NPL
Sbjct: 9 CKRHTE--VVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
Query: 68 LNGSDLSTMIG-PGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADRINLTKT 126
L L+T+I P F + ++QNR + + DR L+ A + I +MADR+ L T
Sbjct: 67 LADGGLTTVISKPNGSSGDFLSSSLGRWQNRGS--NPDRGLIVAFKTIATMADRLGLVAT 124
Query: 127 IVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSK-ISKKEIG 185
I DRAN ++K+V D K+ +GR+ DA+ +ACLYIACRQE PRT KEIC+V+ +KKEIG
Sbjct: 125 IKDRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIG 184
Query: 186 RCFKLILK--ALETS--VDL--ITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVP 239
R + I+K LET V++ I GDFM RFCSNL + N KAA +K+ E DI
Sbjct: 185 RAKEYIVKQLGLETGQLVEMGTIHAGDFMRRFCSNLGMTNQTVKAAQESVQKSEEFDI-- 242
Query: 240 GRSPIXXXXXXXXXXXXXXXDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKLFP 294
RSPI +K+ ++I GVAE TIR SYK +YPH SK+ P
Sbjct: 243 RRSPISIAAAVIYIITQLSDEKKPLRDISVATGVAEGTIRNSYKDLYPHLSKIIP 297
>ASPGD|ASPL0000072123 [details] [associations]
symbol:AN4928 species:162425 "Emericella nidulans"
[GO:0005634 "nucleus" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0017025 "TBP-class
protein binding" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0006413 "translational initiation" evidence=IEA]
[GO:0003743 "translation initiation factor activity" evidence=IEA]
[GO:0006367 "transcription initiation from RNA polymerase II
promoter" evidence=IEA] InterPro:IPR000812 InterPro:IPR013137
InterPro:IPR013150 Pfam:PF00382 Pfam:PF08271 PRINTS:PR00685
PROSITE:PS51134 GO:GO:0006355 GO:GO:0008270 GO:GO:0006352
EMBL:BN001303 Gene3D:1.10.472.10 InterPro:IPR013763 SMART:SM00385
SUPFAM:SSF47954 EMBL:AACD01000084 eggNOG:COG1405 PANTHER:PTHR11618
PROSITE:PS00782 HOGENOM:HOG000108634 KO:K03124 InterPro:IPR023486
OMA:VLRWRKW OrthoDB:EOG4RZ27R RefSeq:XP_662532.1
ProteinModelPortal:Q5B3F2 STRING:Q5B3F2
EnsemblFungi:CADANIAT00005470 GeneID:2872725 KEGG:ani:AN4928.2
Uniprot:Q5B3F2
Length = 351
Score = 404 (147.3 bits), Expect = 4.7e-48, Sum P(2) = 4.7e-48
Identities = 88/204 (43%), Positives = 127/204 (62%)
Query: 1 MNINKVC--CYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNE-KSGVDP 57
++ + +C C E P P +E + + +C CGLV+ DR ID+ SEWRTFSN+ ++ DP
Sbjct: 20 LSAHVICPECKEMP--PNLEFPGSHETVCGSCGLVLADREIDMHSEWRTFSNDDQNNDDP 77
Query: 58 SRVGGPENPLLNGSDLSTMIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSM 117
SRVG NPLLNG L T I G D + + QN+++ + ++++LL A +EI ++
Sbjct: 78 SRVGDATNPLLNGDQLETQIASGGSGRVRD---LYRAQNKQSSDKANKSLLAAYKEIGAL 134
Query: 118 ADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVS 177
D + K + D A LFK V D K KG+S D I + C++IACR+ VPRTF EI AV+
Sbjct: 135 CDGFGIPKNVADTAKYLFKIVDDAKAFKGKSQDVIIAGCIFIACRKCKVPRTFTEIFAVT 194
Query: 178 KISKKEIGRCFKLILKALETSVDL 201
K+S+KEIGR +K + K TS +L
Sbjct: 195 KVSRKEIGRIYKALEKFF-TSQNL 217
Score = 115 (45.5 bits), Expect = 4.7e-48, Sum P(2) = 4.7e-48
Identities = 26/93 (27%), Positives = 44/93 (47%)
Query: 206 DFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPIXXXXXXXXXXXXXXXDKRSQK 265
D SRFC+ L LP V ++ ++ + + GRSP+ +S K
Sbjct: 246 DLCSRFCNLLDLPFQVTSVSSALSDRVTTEGNLAGRSPLSIVAACIYMASYLMGHPKSAK 305
Query: 266 EIGDIAGVAEVTIRQSYKLMYPHASKLFPQDFV 298
EI +A V++ TIR +YK +Y L ++++
Sbjct: 306 EISQVAHVSDGTIRGAYKQLYTERESLVDKEWI 338
>CGD|CAL0001439 [details] [associations]
symbol:SUA71 species:5476 "Candida albicans" [GO:0001139
"core RNA polymerase II recruiting transcription factor activity"
evidence=IEA] [GO:0017025 "TBP-class protein binding" evidence=IEA]
[GO:0001129 "TBP-class protein binding RNA polymerase II
transcription factor activity involved in preinitiation complex
assembly" evidence=IEA] [GO:0000993 "RNA polymerase II core
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:2000679 "positive regulation of transcription regulatory region
DNA binding" evidence=IEA] [GO:0001174 "transcriptional start site
selection at RNA polymerase II promoter" evidence=IEA] [GO:0051123
"RNA polymerase II transcriptional preinitiation complex assembly"
evidence=IEA] [GO:0001113 "transcriptional open complex formation
at RNA polymerase II promoter" evidence=IEA] InterPro:IPR000812
InterPro:IPR013137 InterPro:IPR013150 Pfam:PF00382 Pfam:PF08271
PRINTS:PR00685 PROSITE:PS51134 CGD:CAL0001439 EMBL:AACQ01000017
EMBL:AACQ01000015 GO:GO:0006355 GO:GO:0008270 GO:GO:0006352
Gene3D:1.10.472.10 InterPro:IPR013763 SMART:SM00385 SUPFAM:SSF47954
eggNOG:COG1405 PANTHER:PTHR11618 PROSITE:PS00782 KO:K03124
InterPro:IPR023486 RefSeq:XP_721286.1 RefSeq:XP_721557.1
ProteinModelPortal:Q5AHZ3 STRING:Q5AHZ3 GeneID:3636879
GeneID:3637101 KEGG:cal:CaO19.10577 KEGG:cal:CaO19.3059
Uniprot:Q5AHZ3
Length = 344
Score = 487 (176.5 bits), Expect = 1.8e-46, P = 1.8e-46
Identities = 113/317 (35%), Positives = 172/317 (54%)
Query: 1 MNINKVC--CYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNE-KSGVDP 57
+N+ C C P L+E + GD +C CGLV+ DRV+D SEWRTFSN+ ++G DP
Sbjct: 17 LNVTLTCPECKIFPP-DLVERFSEGDIVCGSCGLVLSDRVVDTRSEWRTFSNDDQNGDDP 75
Query: 58 SRVGGPENPLLNGSDLSTMIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSM 117
SRVG NPLL+ DLSTMI D++ G +S+ Q++ ++ D AL A +I+ M
Sbjct: 76 SRVGDAGNPLLDTEDLSTMISYAP-DSTKAGRELSRAQSKSLVDKKDNALAAAYIKISQM 134
Query: 118 ADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVS 177
D L K + D A ++K V+D K L+G+S ++I +A ++I CR+ V R+FKEI A++
Sbjct: 135 CDGYQLPKIVSDGAKEVYKMVYDEKPLRGKSQESIMAASIFIGCRKANVARSFKEIWALT 194
Query: 178 KISKKEIGRCFKLILKAL--------------ETSVDLITTG--DFMSRFCSNLSLPNMV 221
+ +KEIG+ FK++ K + + S+ T D + RFCS+L + V
Sbjct: 195 NVPRKEIGKVFKIMDKIIREKNAANPNAAYYGQDSIQTTQTSAEDLIRRFCSHLGVNTQV 254
Query: 222 QKAATHIARKAVELDIVPGRSPIXXXXXXXXXXXXXXXDKRSQKEIGDIAGVAEVTIRQS 281
A +IAR+ E+ ++ GRSP +I D GV++ TI+ S
Sbjct: 255 TNGAEYIARRCKEVGVLAGRSPTTIAATVIYMASLVFGFDLPPSKISDKTGVSDGTIKTS 314
Query: 282 YKLMYPHASKLFPQDFV 298
YK MY +L ++
Sbjct: 315 YKYMYEEKEQLIDPSWI 331
>POMBASE|SPAC16E8.16 [details] [associations]
symbol:SPAC16E8.16 "transcription factor TFIIB"
species:4896 "Schizosaccharomyces pombe" [GO:0005634 "nucleus"
evidence=IC;IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006367 "transcription initiation
from RNA polymerase II promoter" evidence=IDA] [GO:0008270 "zinc
ion binding" evidence=IEA] InterPro:IPR000812 InterPro:IPR013137
InterPro:IPR013150 Pfam:PF00382 Pfam:PF08271 PRINTS:PR00685
PROSITE:PS51134 PomBase:SPAC16E8.16 GO:GO:0005634 EMBL:CU329670
GO:GO:0006355 GenomeReviews:CU329670_GR GO:GO:0046872 GO:GO:0008270
GO:GO:0006367 Gene3D:1.10.472.10 InterPro:IPR013763 SMART:SM00385
SUPFAM:SSF47954 eggNOG:COG1405 PANTHER:PTHR11618 PROSITE:PS00782
HOGENOM:HOG000108634 KO:K03124 InterPro:IPR023486 PIR:T37796
RefSeq:NP_594229.1 ProteinModelPortal:O13749 SMR:O13749
STRING:O13749 EnsemblFungi:SPAC16E8.16.1 GeneID:2542339
KEGG:spo:SPAC16E8.16 OMA:VLRWRKW OrthoDB:EOG4RZ27R NextBio:20803400
Uniprot:O13749
Length = 340
Score = 472 (171.2 bits), Expect = 7.1e-45, P = 7.1e-45
Identities = 102/219 (46%), Positives = 139/219 (63%)
Query: 1 MNINKVCCYEHPDAP-LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSN--EKSGVDP 57
+++ +C D P L+E++ +GD +C CGLV+GDR+ID SEWRTFSN E SG DP
Sbjct: 14 LSVKMICSECREDPPNLVEEFSSGDTVCGSCGLVLGDRIIDTRSEWRTFSNSDEASG-DP 72
Query: 58 SRVGGPENPLLNGSDLSTMIGPGRGDASFDGFG--MSKYQNRRTMNSSDRALLNAIREIN 115
SRVG NPLLNGS L T I +S+DG G ++K Q R ++ LL A +EI
Sbjct: 73 SRVGKVANPLLNGSQLDTTI------SSYDGAGAMLAKAQGRSVQVRGEKNLLTAYKEIG 126
Query: 116 SMADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICA 175
+M D I+L K I D A L+K+V D K LKG+S+ +I +AC+YIACRQ VPRTF EIC
Sbjct: 127 AMCDAISLPKVIADTAKQLYKRVDDHKALKGKSSQSIIAACIYIACRQGKVPRTFMEICT 186
Query: 176 VSKISKKEIGRCFKLILK------ALETSVDLITTGDFM 208
++ + KKEIGR +K + + AL SVD + +++
Sbjct: 187 LTNVPKKEIGRVYKTLQRMLTEGGALHNSVDALKGHEYI 225
>SGD|S000006290 [details] [associations]
symbol:SUA7 "Transcription factor TFIIB" species:4932
"Saccharomyces cerevisiae" [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0006352
"DNA-dependent transcription, initiation" evidence=IEA] [GO:0001129
"TBP-class protein binding RNA polymerase II transcription factor
activity involved in preinitiation complex assembly"
evidence=IMP;IDA] [GO:0001139 "core RNA polymerase II recruiting
transcription factor activity" evidence=IMP;IDA] [GO:0017025
"TBP-class protein binding" evidence=IEA;IDA;IPI] [GO:0051123 "RNA
polymerase II transcriptional preinitiation complex assembly"
evidence=IMP;IDA] [GO:0000993 "RNA polymerase II core binding"
evidence=IDA;IPI] [GO:2000679 "positive regulation of transcription
regulatory region DNA binding" evidence=IDA] [GO:0001174
"transcriptional start site selection at RNA polymerase II
promoter" evidence=IMP] [GO:0001113 "transcriptional open complex
formation at RNA polymerase II promoter" evidence=IMP]
InterPro:IPR000812 InterPro:IPR013137 InterPro:IPR013150
Pfam:PF00382 Pfam:PF08271 PRINTS:PR00685 PROSITE:PS51134
SGD:S000006290 GO:GO:0005634 GO:GO:0046872 GO:GO:0008270
EMBL:BK006949 Gene3D:1.10.472.10 InterPro:IPR013763 SMART:SM00385
SUPFAM:SSF47954 EMBL:U51033 eggNOG:COG1405 PANTHER:PTHR11618
PROSITE:PS00782 GO:GO:0017025 GO:GO:0000993 GO:GO:2000679
GO:GO:0001139 GO:GO:0001129 GO:GO:0001113 PDB:3K1F PDB:3K7A
PDB:4BBR PDB:4BBS PDBsum:3K1F PDBsum:3K7A PDBsum:4BBR PDBsum:4BBS
GO:GO:0001174 HOGENOM:HOG000108634 KO:K03124 InterPro:IPR023486
OMA:SNDDQNG GeneTree:ENSGT00390000006671 OrthoDB:EOG4RZ27R
EMBL:M81380 EMBL:AY693232 PIR:S26707 RefSeq:NP_015411.1
ProteinModelPortal:P29055 SMR:P29055 DIP:DIP-701N IntAct:P29055
MINT:MINT-473341 STRING:P29055 PaxDb:P29055 PeptideAtlas:P29055
EnsemblFungi:YPR086W GeneID:856201 KEGG:sce:YPR086W CYGD:YPR086w
EvolutionaryTrace:P29055 NextBio:981402 Genevestigator:P29055
GermOnline:YPR086W Uniprot:P29055
Length = 345
Score = 456 (165.6 bits), Expect = 3.5e-43, P = 3.5e-43
Identities = 110/312 (35%), Positives = 165/312 (52%)
Query: 1 MNINKVC--CYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEK-SGVDP 57
+NI C C +P ++E + GD +C+ CGLV+ D+++D SEWRTFSN+ +G DP
Sbjct: 18 LNIVLTCPECKVYPPK-IVERFSEGDVVCALCGLVLSDKLVDTRSEWRTFSNDDHNGDDP 76
Query: 58 SRVGGPENPLLNGSDLSTMIGPGRG-DASFDGFGMSKYQNRRTMNSSDRALLNAIREINS 116
SRVG NPLL+G++LST IG G D F ++K Q + M+ D + A +I
Sbjct: 77 SRVGEASNPLLDGNNLSTRIGKGETTDMRFTK-ELNKAQGKNVMDKKDNEVQAAFAKITM 135
Query: 117 MADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAV 176
+ D L K + D A +K HD K LKG+S ++I +A + I CR+ V RTFKEI ++
Sbjct: 136 LCDAAELPKIVKDCAKEAYKLCHDEKTLKGKSMESIMAASILIGCRRAEVARTFKEIQSL 195
Query: 177 SKISKKEIGRCFKL---ILKA------LETSVDLITTGD---FMSRFCSNLSLPNMVQKA 224
+ KE G+ + IL+ L+ D ++ ++ RFCS+L LP V +
Sbjct: 196 IHVKTKEFGKTLNIMKNILRGKSEDGFLKIDTDNMSGAQNLTYIPRFCSHLGLPMQVTTS 255
Query: 225 ATHIARKAVELDIVPGRSPIXXXXXXXXXXXXXXXDKRSQKEIGDIAGVAEVTIRQSYKL 284
A + A+K E+ + G+SPI + ++G V E TI+ YK+
Sbjct: 256 AEYTAKKCKEIKEIAGKSPITIAVVSIYLNILLFQIPITAAKVGQTLQVTEGTIKSGYKI 315
Query: 285 MYPHASKLF-PQ 295
+Y H KL PQ
Sbjct: 316 LYEHRDKLVDPQ 327
>CGD|CAL0005818 [details] [associations]
symbol:SUA72 species:5476 "Candida albicans" [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000679
InterPro:IPR000812 InterPro:IPR013137 InterPro:IPR013150
Pfam:PF00382 Pfam:PF08271 PRINTS:PR00685 PROSITE:PS50114
PROSITE:PS51134 CGD:CAL0005818 EMBL:AACQ01000315 GO:GO:0043565
GO:GO:0008270 GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.472.10
InterPro:IPR013763 SMART:SM00385 SUPFAM:SSF47954 eggNOG:COG1405
PANTHER:PTHR11618 PROSITE:PS00782 HOGENOM:HOG000108634 KO:K03124
InterPro:IPR023486 RefSeq:XP_710164.1 ProteinModelPortal:Q59K82
STRING:Q59K82 GeneID:3648239 KEGG:cal:CaO19.3519 Uniprot:Q59K82
Length = 346
Score = 396 (144.5 bits), Expect = 8.0e-37, P = 8.0e-37
Identities = 94/264 (35%), Positives = 148/264 (56%)
Query: 1 MNINKVC--CYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNE-KSGVDP 57
+N+ +C C + P LIE + GD IC +CGLV+ DR++D SEWRTF N+ K+ DP
Sbjct: 16 LNVTLICPDCKQFPP-DLIERFSEGDIICGQCGLVLSDRIVDTRSEWRTFQNDDKNTDDP 74
Query: 58 SRVGGPENPLLNGSDLSTMIG--PGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREIN 115
SRVG N L + DL+TMI P S ++K Q + ++ + AL A ++I+
Sbjct: 75 SRVGDASNSLYDTEDLTTMISYAPNSNSGSSKN-SLNKIQQKSLVDKKNYALQTAYQKIS 133
Query: 116 SMADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICA 175
+ + L K+ D A +L+K V + + LKG++ D+I +A + + CR+ VPRT +EI A
Sbjct: 134 ELCNGYQLPKSASDAAKHLYKAVREDRLLKGKTQDSIMAATILLGCRRADVPRTLEEIRA 193
Query: 176 VSKISKKEIGRCFKLILKALE---------TSV----DLITTG---DFMSRFCSNLSLPN 219
++ + K+I + LI K + TS+ +TT D + RFCS+L L
Sbjct: 194 LTNVPTKQIAKVTGLIKKIIRSHLNNDDASTSIVDETSSLTTHSAEDLIRRFCSHLGLSL 253
Query: 220 MVQKAATHIARKAVELDIVPGRSP 243
+ A+ ++ARK +L ++ GRSP
Sbjct: 254 AITSASEYVARKCHDLGVLAGRSP 277
Score = 134 (52.2 bits), Expect = 2.6e-06, P = 2.6e-06
Identities = 30/88 (34%), Positives = 47/88 (53%)
Query: 206 DFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPIXXXXXXXXXXXXXXXD-KRSQ 264
D + RFCS+L L + A+ ++ARK +L ++ GRSP D K +Q
Sbjct: 240 DLIRRFCSHLGLSLAITSASEYVARKCHDLGVLAGRSPTTIAATSIFLAAKSLGDTKLTQ 299
Query: 265 KEIGDIAGVAEVTIRQSYKLMYPHASKL 292
++I D GV+ TI+ SYK++ +A L
Sbjct: 300 QQIRDKTGVSIGTIKNSYKILQENAKDL 327
>UNIPROTKB|Q59K82 [details] [associations]
symbol:SUA72 "Likely transcription factor TFIIB"
species:237561 "Candida albicans SC5314" [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000679
InterPro:IPR000812 InterPro:IPR013137 InterPro:IPR013150
Pfam:PF00382 Pfam:PF08271 PRINTS:PR00685 PROSITE:PS50114
PROSITE:PS51134 CGD:CAL0005818 EMBL:AACQ01000315 GO:GO:0043565
GO:GO:0008270 GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.472.10
InterPro:IPR013763 SMART:SM00385 SUPFAM:SSF47954 eggNOG:COG1405
PANTHER:PTHR11618 PROSITE:PS00782 HOGENOM:HOG000108634 KO:K03124
InterPro:IPR023486 RefSeq:XP_710164.1 ProteinModelPortal:Q59K82
STRING:Q59K82 GeneID:3648239 KEGG:cal:CaO19.3519 Uniprot:Q59K82
Length = 346
Score = 396 (144.5 bits), Expect = 8.0e-37, P = 8.0e-37
Identities = 94/264 (35%), Positives = 148/264 (56%)
Query: 1 MNINKVC--CYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNE-KSGVDP 57
+N+ +C C + P LIE + GD IC +CGLV+ DR++D SEWRTF N+ K+ DP
Sbjct: 16 LNVTLICPDCKQFPP-DLIERFSEGDIICGQCGLVLSDRIVDTRSEWRTFQNDDKNTDDP 74
Query: 58 SRVGGPENPLLNGSDLSTMIG--PGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREIN 115
SRVG N L + DL+TMI P S ++K Q + ++ + AL A ++I+
Sbjct: 75 SRVGDASNSLYDTEDLTTMISYAPNSNSGSSKN-SLNKIQQKSLVDKKNYALQTAYQKIS 133
Query: 116 SMADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICA 175
+ + L K+ D A +L+K V + + LKG++ D+I +A + + CR+ VPRT +EI A
Sbjct: 134 ELCNGYQLPKSASDAAKHLYKAVREDRLLKGKTQDSIMAATILLGCRRADVPRTLEEIRA 193
Query: 176 VSKISKKEIGRCFKLILKALE---------TSV----DLITTG---DFMSRFCSNLSLPN 219
++ + K+I + LI K + TS+ +TT D + RFCS+L L
Sbjct: 194 LTNVPTKQIAKVTGLIKKIIRSHLNNDDASTSIVDETSSLTTHSAEDLIRRFCSHLGLSL 253
Query: 220 MVQKAATHIARKAVELDIVPGRSP 243
+ A+ ++ARK +L ++ GRSP
Sbjct: 254 AITSASEYVARKCHDLGVLAGRSP 277
Score = 134 (52.2 bits), Expect = 2.6e-06, P = 2.6e-06
Identities = 30/88 (34%), Positives = 47/88 (53%)
Query: 206 DFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPIXXXXXXXXXXXXXXXD-KRSQ 264
D + RFCS+L L + A+ ++ARK +L ++ GRSP D K +Q
Sbjct: 240 DLIRRFCSHLGLSLAITSASEYVARKCHDLGVLAGRSPTTIAATSIFLAAKSLGDTKLTQ 299
Query: 265 KEIGDIAGVAEVTIRQSYKLMYPHASKL 292
++I D GV+ TI+ SYK++ +A L
Sbjct: 300 QQIRDKTGVSIGTIKNSYKILQENAKDL 327
>TAIR|locus:2093852 [details] [associations]
symbol:pBRP2 "plant-specific TFIIB-related protein 2"
species:3702 "Arabidopsis thaliana" [GO:0003743 "translation
initiation factor activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0006352 "DNA-dependent transcription,
initiation" evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;ISS] [GO:0006413 "translational
initiation" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0046686 "response to cadmium ion" evidence=IEP]
[GO:0000769 "syncytium formation by mitosis without cytokinesis"
evidence=IMP] [GO:0009960 "endosperm development" evidence=IMP]
[GO:0010440 "stomatal lineage progression" evidence=RCA]
InterPro:IPR000812 InterPro:IPR013137 InterPro:IPR013150
Pfam:PF00382 Pfam:PF08271 PRINTS:PR00685 PROSITE:PS51134
GO:GO:0005634 GO:GO:0046686 EMBL:CP002686 GO:GO:0006355
GO:GO:0008270 GO:GO:0006352 GO:GO:0009960 GO:GO:0003743
EMBL:AP001309 Gene3D:1.10.472.10 InterPro:IPR013763 SMART:SM00385
SUPFAM:SSF47954 PANTHER:PTHR11618 KO:K03124 HSSP:Q00403
IPI:IPI00533744 RefSeq:NP_189584.1 UniGene:At.36925
ProteinModelPortal:Q9LIA6 SMR:Q9LIA6 STRING:Q9LIA6
EnsemblPlants:AT3G29380.1 GeneID:822598 KEGG:ath:AT3G29380
TAIR:At3g29380 InParanoid:Q9LIA6 OMA:NSRACEI PhylomeDB:Q9LIA6
ProtClustDB:CLSN2913417 ArrayExpress:Q9LIA6 Genevestigator:Q9LIA6
GO:GO:0000769 Uniprot:Q9LIA6
Length = 336
Score = 352 (129.0 bits), Expect = 3.7e-32, P = 3.7e-32
Identities = 101/307 (32%), Positives = 149/307 (48%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEK--SGVDPSRVGGPENPLLNGSDL 73
++ D+ +GD ICSECGLV+ +I+ EWRTF+++ S DP+RVG NP L DL
Sbjct: 15 MVVDHSSGDTICSECGLVLEAHIIEYSQEWRTFASDDNHSDRDPNRVGAATNPFLKSGDL 74
Query: 74 STMIGPGRGDASF----DGFGMSKYQNRRTMNSSDRALLNAIREINSMADRINLTKTIVD 129
T+I + AS D + + N + + A EI M D ++L I
Sbjct: 75 VTIIEKPKETASSVLSKDDISTLFRAHNQVKNHEEDLIKQAFEEIQRMTDALDLDIVINS 134
Query: 130 RANNLFKQVHDGK-NLK---GRSNDAIASACLYIACRQEGVPRTFKEICAVSK-ISKKEI 184
RA + + +DG N K G+ +AI +A + ACR+ + RT KEI V+ + KK+I
Sbjct: 135 RACEIVSK-YDGHANTKLRRGKKLNAICAASVSTACRELQLSRTLKEIAEVANGVDKKDI 193
Query: 185 GR---CFKLILKALETSVD----LITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDI 237
+ K +L++ +TSV +I TG+ + RFCS L + A KA DI
Sbjct: 194 RKESLVIKRVLESHQTSVSASQAIINTGELVRRFCSKLDISQREIMAIPEAVEKAENFDI 253
Query: 238 VPGRSPIXXXXXXXXXXXXXXXDKRSQ-KEIGDIAGVAEVTIRQSYKLMYPHASKLFPQD 296
R+P R +EIG +A V E TI+ S K MYP+A K+ P
Sbjct: 254 --RRNPKSVLAAIIFMISHISQTNRKPIREIGIVAEVVENTIKNSVKDMYPYALKIIPNW 311
Query: 297 FVFHTPI 303
+ + I
Sbjct: 312 YACESDI 318
>TAIR|locus:2115255 [details] [associations]
symbol:PBRP "plant-specific TFIIB-related protein"
species:3702 "Arabidopsis thaliana" [GO:0003743 "translation
initiation factor activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006352 "DNA-dependent transcription, initiation"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;ISS] [GO:0006413 "translational
initiation" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0009527 "plastid outer membrane" evidence=IDA]
[GO:0000182 "rDNA binding" evidence=IDA] [GO:0010440 "stomatal
lineage progression" evidence=RCA] InterPro:IPR000812
InterPro:IPR013150 Pfam:PF00382 PRINTS:PR00685 EMBL:CP002687
GenomeReviews:CT486007_GR GO:GO:0006355 GO:GO:0008270 GO:GO:0006352
GO:GO:0003743 EMBL:AL161589 Gene3D:1.10.472.10 InterPro:IPR013763
SMART:SM00385 SUPFAM:SSF47954 EMBL:Z99708 PANTHER:PTHR11618
GO:GO:0000182 GO:GO:0009527 KO:K03124 HSSP:Q00403 EMBL:BT006470
EMBL:AY463603 EMBL:AJ295068 IPI:IPI00543098 PIR:G85432
RefSeq:NP_195383.1 UniGene:At.48945 ProteinModelPortal:O23215
SMR:O23215 STRING:O23215 PRIDE:O23215 EnsemblPlants:AT4G36650.1
GeneID:829817 KEGG:ath:AT4G36650 TAIR:At4g36650
HOGENOM:HOG000114088 InParanoid:O23215 OMA:RDCCSAT PhylomeDB:O23215
ProtClustDB:CLSN2685566 Genevestigator:O23215 Uniprot:O23215
Length = 503
Score = 235 (87.8 bits), Expect = 5.1e-19, P = 5.1e-19
Identities = 60/197 (30%), Positives = 96/197 (48%)
Query: 108 LNAIREINSMADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVP 167
L A +I +A + L I + A LF+ L+ RS +A+A+ACL A R+ P
Sbjct: 131 LRAYMQIIDVASILGLDCDISEHAFQLFRDCCSATCLRNRSVEALATACLVQAIREAQEP 190
Query: 168 RTFKEICAVSKISKKEIGRCFKLILKALETS--VDLITTGDFMSRFCSNLSLPNMVQKAA 225
RT +EI + + +KEIG+ K++ +AL+ S ++ + M RFC+ L L Q+ A
Sbjct: 191 RTLQEISIAANVQQKEIGKYIKILGEALQLSQPINSNSISVHMPRFCTLLQLNKSAQELA 250
Query: 226 THIARKAVELDIVPGRSPIXXXXXXXXXXXXXXXDKRSQKEIGDIAGVAEVTIRQSYKLM 285
THI + R+PI +++Q EI I G+ EVT+R+ YK +
Sbjct: 251 THIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKITGLTEVTLRKVYKEL 310
Query: 286 YPHASKLFPQDFVFHTP 302
+ L P ++ P
Sbjct: 311 LENWDDLLPSNYTPAVP 327
>GENEDB_PFALCIPARUM|PFA0525w [details] [associations]
symbol:PFA0525w "transcription initiation factor
TFIIB, putative" species:5833 "Plasmodium falciparum" [GO:0006367
"transcription initiation from RNA polymerase II promoter"
evidence=ISS] InterPro:IPR000812 InterPro:IPR013137
InterPro:IPR013150 Pfam:PF00382 Pfam:PF08271 PRINTS:PR00685
PROSITE:PS51134 GO:GO:0006355 GO:GO:0008270 GO:GO:0003743
GO:GO:0006367 Gene3D:1.10.472.10 InterPro:IPR013763 SUPFAM:SSF47954
PANTHER:PTHR11618 EMBL:AL844501 KO:K03124 HSSP:Q00403
RefSeq:XP_001351037.1 ProteinModelPortal:Q8I237 PRIDE:Q8I237
EnsemblProtists:PFA0525w:mRNA GeneID:813242 KEGG:pfa:PFA_0525w
HOGENOM:HOG000283789 OMA:YNENISH ProtClustDB:CLSZ2432986
Uniprot:Q8I237
Length = 367
Score = 208 (78.3 bits), Expect = 2.1e-15, P = 2.1e-15
Identities = 66/294 (22%), Positives = 128/294 (43%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNE--KSGVDPSRVGGPENPLLNGSDL 73
+I D G QIC+ CG+VV +++ EWR F N+ D +RVG + L +
Sbjct: 59 IICDTSEGTQICNGCGMVVESKILSEEQEWRNFQNDGQSKNTDRNRVGEVSDIWLENNLT 118
Query: 74 STMIGPGRGDASFDGFGMSKYQNRRT-MNSSDRALLNAIREINSMADRINLTKTIVDRAN 132
ST ++ N T +N +D+ L++A + + D L +++RA
Sbjct: 119 STTF--------IKSSKKLQHLNMMTQINKNDQTLISAFNILKLICDTFFLRSNVIERAK 170
Query: 133 NLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISK-KEIGRCFKLI 191
+ K++ D + LK R N+ A +Y+ACR+ G ++ KE+ + K K++G+ +
Sbjct: 171 EITKELQDMEQLKNRINNLNMLAVVYLACREAGHIKSIKELITFDRSYKEKDLGKTINKL 230
Query: 192 LKALETSVDLITTG--DFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPIXXXXX 249
K L + + + + L L + +A ++ +KA L R
Sbjct: 231 KKVLPSRAFVYNENISHLIYSLSNRLQLSIDLIEAIEYVVKKASTLITTSHRLNSLCGGS 290
Query: 250 XXXXXXXXXXDKRSQK-----EIGDIAGVAEVTIRQSYKLMYPHASKLFPQDFV 298
++++ K +I + GV T++ ++K + A + P+ ++
Sbjct: 291 IHLIVELNTNEEKNMKLPNLSQIATVCGVTTNTLKTTFKELLNAAEYIIPKYYL 344
>UNIPROTKB|Q8I237 [details] [associations]
symbol:PFA_0525w "Transcription initiation factor TFIIB,
putative" species:36329 "Plasmodium falciparum 3D7" [GO:0006367
"transcription initiation from RNA polymerase II promoter"
evidence=ISS] InterPro:IPR000812 InterPro:IPR013137
InterPro:IPR013150 Pfam:PF00382 Pfam:PF08271 PRINTS:PR00685
PROSITE:PS51134 GO:GO:0006355 GO:GO:0008270 GO:GO:0003743
GO:GO:0006367 Gene3D:1.10.472.10 InterPro:IPR013763 SUPFAM:SSF47954
PANTHER:PTHR11618 EMBL:AL844501 KO:K03124 HSSP:Q00403
RefSeq:XP_001351037.1 ProteinModelPortal:Q8I237 PRIDE:Q8I237
EnsemblProtists:PFA0525w:mRNA GeneID:813242 KEGG:pfa:PFA_0525w
HOGENOM:HOG000283789 OMA:YNENISH ProtClustDB:CLSZ2432986
Uniprot:Q8I237
Length = 367
Score = 208 (78.3 bits), Expect = 2.1e-15, P = 2.1e-15
Identities = 66/294 (22%), Positives = 128/294 (43%)
Query: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNE--KSGVDPSRVGGPENPLLNGSDL 73
+I D G QIC+ CG+VV +++ EWR F N+ D +RVG + L +
Sbjct: 59 IICDTSEGTQICNGCGMVVESKILSEEQEWRNFQNDGQSKNTDRNRVGEVSDIWLENNLT 118
Query: 74 STMIGPGRGDASFDGFGMSKYQNRRT-MNSSDRALLNAIREINSMADRINLTKTIVDRAN 132
ST ++ N T +N +D+ L++A + + D L +++RA
Sbjct: 119 STTF--------IKSSKKLQHLNMMTQINKNDQTLISAFNILKLICDTFFLRSNVIERAK 170
Query: 133 NLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISK-KEIGRCFKLI 191
+ K++ D + LK R N+ A +Y+ACR+ G ++ KE+ + K K++G+ +
Sbjct: 171 EITKELQDMEQLKNRINNLNMLAVVYLACREAGHIKSIKELITFDRSYKEKDLGKTINKL 230
Query: 192 LKALETSVDLITTG--DFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPIXXXXX 249
K L + + + + L L + +A ++ +KA L R
Sbjct: 231 KKVLPSRAFVYNENISHLIYSLSNRLQLSIDLIEAIEYVVKKASTLITTSHRLNSLCGGS 290
Query: 250 XXXXXXXXXXDKRSQK-----EIGDIAGVAEVTIRQSYKLMYPHASKLFPQDFV 298
++++ K +I + GV T++ ++K + A + P+ ++
Sbjct: 291 IHLIVELNTNEEKNMKLPNLSQIATVCGVTTNTLKTTFKELLNAAEYIIPKYYL 344
>TAIR|locus:2139227 [details] [associations]
symbol:AT4G10680 species:3702 "Arabidopsis thaliana"
[GO:0003743 "translation initiation factor activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM] [GO:0006352 "DNA-dependent
transcription, initiation" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA;ISS] [GO:0006413
"translational initiation" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] InterPro:IPR000812 InterPro:IPR013137
InterPro:IPR013150 Pfam:PF00382 Pfam:PF08271 PRINTS:PR00685
PROSITE:PS51134 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0006355 GO:GO:0008270 GO:GO:0006352 GO:GO:0003743
Gene3D:1.10.472.10 InterPro:IPR013763 SMART:SM00385 SUPFAM:SSF47954
eggNOG:COG1405 PANTHER:PTHR11618 EMBL:AL049523 EMBL:AF080119
EMBL:AL161518 KO:K03124 HSSP:P61999 EMBL:AY463604 IPI:IPI00527305
PIR:T01909 RefSeq:NP_192806.1 UniGene:At.33613
ProteinModelPortal:O82494 SMR:O82494 STRING:O82494
EnsemblPlants:AT4G10680.1 GeneID:826661 KEGG:ath:AT4G10680
TAIR:At4g10680 InParanoid:O82494 PhylomeDB:O82494
Genevestigator:O82494 Uniprot:O82494
Length = 182
Score = 184 (69.8 bits), Expect = 3.1e-14, P = 3.1e-14
Identities = 55/177 (31%), Positives = 86/177 (48%)
Query: 17 IEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLSTM 76
+ +Y+ GD IC ECG V+ + +ID +D G NP L L T+
Sbjct: 17 VVNYKNGDTICIECGHVIENNIID-------------DLD----GASTNPNLKSGHLPTI 59
Query: 77 IGPGRGDASFDGFGMSKYQNRRTMNSSDRALLN-AIREINSMADRINLTKTIVDRANNLF 135
I G +S + + QN N + ++ A EI M + + LT I + A +
Sbjct: 60 IFKLSGKSSSLASKLRRTQNEMIKNKQEEDVIKIAYAEIERMTEALGLTFGISNTACKIL 119
Query: 136 KQVHDGKNLKG-RSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGRCFKLI 191
++ D KNL+G +S + +A + ACRQ +P+T KEI AV+ + KEI + KL+
Sbjct: 120 SKL-DKKNLRGGKSLRGLCAASVSRACRQVNIPKTLKEISAVANVDMKEINKAVKLL 175
>TAIR|locus:2082583 [details] [associations]
symbol:AT3G57370 species:3702 "Arabidopsis thaliana"
[GO:0003743 "translation initiation factor activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM] [GO:0006352 "DNA-dependent
transcription, initiation" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA;ISS] [GO:0006413
"translational initiation" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0010440 "stomatal lineage progression"
evidence=RCA] InterPro:IPR000812 InterPro:IPR013150 Pfam:PF00382
EMBL:CP002686 GO:GO:0006355 GO:GO:0008270 GO:GO:0006352
EMBL:AL137080 Gene3D:1.10.472.10 InterPro:IPR013763 SMART:SM00385
SUPFAM:SSF47954 PANTHER:PTHR11618 KO:K03124 HSSP:Q00403
EMBL:AY463602 IPI:IPI00522698 PIR:T45815 RefSeq:NP_191296.1
UniGene:At.34838 ProteinModelPortal:Q9M2L0 SMR:Q9M2L0 STRING:Q9M2L0
PRIDE:Q9M2L0 EnsemblPlants:AT3G57370.1 GeneID:824904
KEGG:ath:AT3G57370 TAIR:At3g57370 InParanoid:Q9M2L0
PhylomeDB:Q9M2L0 ArrayExpress:Q9M2L0 Genevestigator:Q9M2L0
Uniprot:Q9M2L0
Length = 360
Score = 190 (71.9 bits), Expect = 6.0e-13, P = 6.0e-13
Identities = 66/246 (26%), Positives = 111/246 (45%)
Query: 60 VGGPENPLLN-G-SDLSTMIGPGRGDASFDGFG-MSKYQ-NRRTMNSSDRALLNAIREIN 115
+ G N L+ G S S I + F G + K+ + +M S+ +I I
Sbjct: 106 MNGSSNDFLSLGTSQNSETITASSDEFLFSDLGHLQKFSFDPLSMASTKPNKALSIVSIE 165
Query: 116 SMADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICA 175
++++ + L TI +AN +FK V +G+ + + +AC+YIACR + RT +EI
Sbjct: 166 AISNGLKLPATIKGQANEIFKVVES--YARGKERNVLFAACIYIACRDNDMTRTMREISR 223
Query: 176 -VSKISKKEIGRCFKLILKALETSVDL---ITTGDFMSRFCSNLSLPNMVQKAATHIARK 231
+K S +I I + LE + + I T +F+ RFCS L +AA A +
Sbjct: 224 FANKASISDISETVGFIAEKLEINKNWYMSIETANFIKRFCSIFRLDKEAVEAALEAA-E 282
Query: 232 AVELDIVPGRSPIXXXXXXXXXXXXXXXDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASK 291
+ + R+P+ +K K + + GVAE TI+ +Y +YP+
Sbjct: 283 SYDYMTNGRRAPVSVAAGIVYVIARLSYEKHLLKGLIEATGVAENTIKGTYGDLYPNLPT 342
Query: 292 LFPQDF 297
+ P F
Sbjct: 343 IVPTWF 348
>SGD|S000003478 [details] [associations]
symbol:BRF1 "TFIIIB B-related factor" species:4932
"Saccharomyces cerevisiae" [GO:0005634 "nucleus" evidence=IEA]
[GO:0017025 "TBP-class protein binding" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0070893
"transposon integration" evidence=IDA] [GO:0090074 "negative
regulation of protein homodimerization activity" evidence=IDA]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0001026 "TFIIIB-type transcription factor
activity" evidence=IC] [GO:0000994 "RNA polymerase III core
binding" evidence=IDA;IPI] [GO:0001156 "TFIIIC-class transcription
factor binding" evidence=IDA;IPI] [GO:0001112 "DNA-dependent
transcriptional open complex formation" evidence=IMP] [GO:0070898
"RNA polymerase III transcriptional preinitiation complex assembly"
evidence=IMP;IDA] [GO:0003677 "DNA binding" evidence=IDA]
[GO:0000126 "transcription factor TFIIIB complex" evidence=IDA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0006352
"DNA-dependent transcription, initiation" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] InterPro:IPR000812
InterPro:IPR011665 InterPro:IPR013137 InterPro:IPR013150
Pfam:PF00382 Pfam:PF07741 Pfam:PF08271 PRINTS:PR00685
PROSITE:PS51134 SGD:S000003478 GO:GO:0045893 EMBL:BK006941
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 Gene3D:1.10.472.10
InterPro:IPR013763 SMART:SM00385 SUPFAM:SSF47954 eggNOG:COG1405
PANTHER:PTHR11618 PROSITE:PS00782 EMBL:Y07703 Reactome:REACT_83470
GO:GO:0090074 GO:GO:0000994 GO:GO:0001156 GO:GO:0070898
Reactome:REACT_87991 GO:GO:0000126 PDB:1NGM PDBsum:1NGM
GO:GO:0001026 GO:GO:0070893 InterPro:IPR023486 KO:K15196
HOGENOM:HOG000198688 OrthoDB:EOG40P7GP EMBL:M91073 EMBL:L00630
EMBL:Z73031 PIR:A44072 RefSeq:NP_011762.1 ProteinModelPortal:P29056
SMR:P29056 DIP:DIP-191N IntAct:P29056 MINT:MINT-2783113
STRING:P29056 PaxDb:P29056 PeptideAtlas:P29056 EnsemblFungi:YGR246C
GeneID:853161 KEGG:sce:YGR246C CYGD:YGR246c
GeneTree:ENSGT00390000010349 OMA:CRKERTH EvolutionaryTrace:P29056
NextBio:973264 Genevestigator:P29056 GermOnline:YGR246C
GO:GO:0001112 Uniprot:P29056
Length = 596
Score = 170 (64.9 bits), Expect = 4.9e-10, P = 4.9e-10
Identities = 65/267 (24%), Positives = 116/267 (43%)
Query: 42 GSEW-RTFSNEKSGVDPSRVG--GPENPLLNGSDLS-TMIGPGRGDASFDGFGMSK--YQ 95
G+E+ R SN + + G +NP+++ T G SF G G S +
Sbjct: 9 GTEFERDLSNANNDLVCKACGVVSEDNPIVSEVTFGETSAGAAVVQGSFIGAGQSHAAFG 68
Query: 96 NRRTMNSSDRALLNAIREINSMADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASA 155
+ S + L NA R++ +++ +++ + I D A +K ++GR + + ++
Sbjct: 69 GSSALESREATLNNARRKLRAVSYALHIPEYITDAAFQWYKLALANNFVQGRRSQNVIAS 128
Query: 156 CLYIACRQEGVPRTFKEICAVSKISKKEIGRCFKLILKALE-TSVDLITTGDFMSRFCSN 214
CLY+ACR+E + + ++S IG F ++K L T + L F+ F
Sbjct: 129 CLYVACRKEKTHHMLIDFSSRLQVSVYSIGATFLKMVKKLHITELPLADPSLFIQHFAEK 188
Query: 215 LSLPNM---VQKAATHIARKAVELDIVPGRSPIXXXXXXXXXXXXXXXDKRSQKEIGDIA 271
L L + V K A +A++ + + GR P +R+ EI ++
Sbjct: 189 LDLADKKIKVVKDAVKLAQRMSKDWMFEGRRPAGIAGACILLACRMNNLRRTHTEIVAVS 248
Query: 272 GVAEVTIRQSY-KLMYPHASKLFPQDF 297
VAE T++Q + A+KL Q F
Sbjct: 249 HVAEETLQQRLNEFKNTKAAKLSVQKF 275
>UNIPROTKB|F1NQ85 [details] [associations]
symbol:BRF1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0005634 "nucleus" evidence=IEA] [GO:0006352
"DNA-dependent transcription, initiation" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0017025 "TBP-class protein
binding" evidence=IEA] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IEA] InterPro:IPR000812
InterPro:IPR011665 InterPro:IPR013137 InterPro:IPR013150
Pfam:PF00382 Pfam:PF07741 Pfam:PF08271 PRINTS:PR00685
PROSITE:PS51134 GO:GO:0005634 GO:GO:0045893 GO:GO:0008270
GO:GO:0006352 GO:GO:0043488 Gene3D:1.10.472.10 InterPro:IPR013763
SMART:SM00385 SUPFAM:SSF47954 PANTHER:PTHR11618 OMA:YGCDGDE
GeneTree:ENSGT00390000010349 EMBL:AADN02003843 EMBL:AADN02003838
EMBL:AADN02003839 EMBL:AADN02003840 EMBL:AADN02003841
EMBL:AADN02003842 IPI:IPI00588765 Ensembl:ENSGALT00000019132
Uniprot:F1NQ85
Length = 593
Score = 151 (58.2 bits), Expect = 6.6e-10, Sum P(2) = 6.6e-10
Identities = 46/201 (22%), Positives = 87/201 (43%)
Query: 102 SSDRALLNAIREINSMADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIAC 161
S + L N R+I+ + +++ L + +D A N FK +GR + +ACLY+ C
Sbjct: 79 SRAQTLQNGKRQIHHLGNQLQLNQHCLDTAFNFFKMAVSKHLTRGRKMTHVIAACLYLVC 138
Query: 162 RQEGVPRTFKEICAVSKISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNM- 220
R EG P ++ + +++ +G+ F L+ + L + I ++ RF L +
Sbjct: 139 RTEGTPHMLLDLSDLLQVNVYVLGKTFLLLARELCINAPAIDPCLYIPRFAHMLEFGDKN 198
Query: 221 --VQKAATHIARKAVELDIVPGRSPIXXXXXXXXXXXXXXXDKRSQKEIGDIAGVAEVTI 278
V A + ++ + GR P +R+ KE+ + V E T+
Sbjct: 199 HEVSMTALRLLQRMKRDWMHTGRRPSGLCGAALLVAARMHDFRRTVKEVIRVVKVCESTL 258
Query: 279 RQSY-KLMYPHASKLFPQDFV 298
R+ + Y S+L +F+
Sbjct: 259 RKRLTEFEYTPTSQLTIDEFM 279
Score = 60 (26.2 bits), Expect = 6.6e-10, Sum P(2) = 6.6e-10
Identities = 21/62 (33%), Positives = 31/62 (50%)
Query: 19 DYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLSTMIG 78
D GD +C+ CG V+ D +I SE + N SG S VG + L+G+ + +G
Sbjct: 15 DAARGDAVCTGCGSVLEDNIIV--SEVQFVEN--SGGGSSAVG--QFVSLDGAGKTPTLG 68
Query: 79 PG 80
G
Sbjct: 69 GG 70
>ZFIN|ZDB-GENE-030131-6334 [details] [associations]
symbol:brf1a "BRF1 homolog, subunit of RNA
polymerase III transcription initiation factor IIIBa" species:7955
"Danio rerio" [GO:0005634 "nucleus" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0017025 "TBP-class
protein binding" evidence=IEA] [GO:0006352 "DNA-dependent
transcription, initiation" evidence=IEA] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0003743 "translation initiation factor activity" evidence=IEA]
[GO:0006413 "translational initiation" evidence=IEA]
InterPro:IPR000812 InterPro:IPR011665 InterPro:IPR013137
InterPro:IPR013150 Pfam:PF00382 Pfam:PF07741 Pfam:PF08271
PRINTS:PR00685 PROSITE:PS51134 ZFIN:ZDB-GENE-030131-6334
GO:GO:0005634 GO:GO:0045893 GO:GO:0008270 GO:GO:0006352
GO:GO:0003743 Gene3D:1.10.472.10 InterPro:IPR013763 SMART:SM00385
SUPFAM:SSF47954 eggNOG:COG1405 PANTHER:PTHR11618 KO:K15196
HOVERGEN:HBG023540 OrthoDB:EOG4NGGMJ HOGENOM:HOG000198688
HSSP:P61999 EMBL:BC046877 IPI:IPI00488634 RefSeq:NP_956192.1
UniGene:Dr.20342 ProteinModelPortal:Q802Z8 GeneID:334402
KEGG:dre:334402 CTD:334402 InParanoid:Q802Z8 NextBio:20810386
Uniprot:Q802Z8
Length = 661
Score = 163 (62.4 bits), Expect = 1.2e-09, Sum P(2) = 1.2e-09
Identities = 54/236 (22%), Positives = 102/236 (43%)
Query: 69 NGSDLSTMIGPG-RGDASFDGFGMS-KYQNRRTMNSSDRALLNAIREINSMADRINLTKT 126
+G S+ +G GDAS + + +Q S L NA R+IN + ++ + +
Sbjct: 44 SGGGGSSAVGQFVAGDASGNVPSLGGNFQTSVGRESRAATLQNAKRQINHLGHQLQMNQH 103
Query: 127 IVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGR 186
+D A N +K KGR + + +ACLY+ CR EG P ++ + +++ +G+
Sbjct: 104 CLDTAFNFYKMALSKHLTKGRKSTHVIAACLYLVCRTEGTPHMLLDLSDLLQVNVYVLGK 163
Query: 187 CFKLILKALETSVDLITTGDFMSRFCSNLSL---PNMVQKAATHIARKAVELDIVPGRSP 243
F ++ + L + I ++ RF L + V A + ++ + GR P
Sbjct: 164 TFLVLARELCINAPAIDPCLYIPRFAQLLEFGEKSHEVSMTALRLLQRMKRDWMHTGRRP 223
Query: 244 IXXXXXXXXXXXXXXXDKRSQKEIGDIAGVAEVTIRQS-YKLMYPHASKLFPQDFV 298
+R+ KE+ + V E T+R+ Y+ S+L ++F+
Sbjct: 224 SGLCGAALLVAARMHEFRRTIKEVISVVKVCEATLRKRLYEFEDTPTSELTIEEFM 279
Score = 45 (20.9 bits), Expect = 1.2e-09, Sum P(2) = 1.2e-09
Identities = 17/43 (39%), Positives = 20/43 (46%)
Query: 19 DYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVG 61
D G +C CG V+ D +I SE TF E G S VG
Sbjct: 15 DQARGVAVCMGCGSVLEDNIIV--SEV-TFV-ESGGGGSSAVG 53
>FB|FBgn0038499 [details] [associations]
symbol:Brf "Brf" species:7227 "Drosophila melanogaster"
[GO:0006359 "regulation of transcription from RNA polymerase III
promoter" evidence=ISS;IDA;IPI] [GO:0000126 "transcription factor
TFIIIB complex" evidence=ISS] [GO:0008134 "transcription factor
binding" evidence=IPI] [GO:0005667 "transcription factor complex"
evidence=IPI] [GO:0006383 "transcription from RNA polymerase III
promoter" evidence=IDA] [GO:0005634 "nucleus" evidence=NAS]
[GO:0017025 "TBP-class protein binding" evidence=IEA] [GO:0006352
"DNA-dependent transcription, initiation" evidence=IEA] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0001046 "core
promoter sequence-specific DNA binding" evidence=IPI] [GO:0048812
"neuron projection morphogenesis" evidence=IMP] InterPro:IPR000812
InterPro:IPR011665 InterPro:IPR013137 InterPro:IPR013150
Pfam:PF00382 Pfam:PF07741 Pfam:PF08271 PRINTS:PR00685
PROSITE:PS51134 GO:GO:0045893 GO:GO:0008270 GO:GO:0006352
GO:GO:0005667 Gene3D:1.10.472.10 InterPro:IPR013763 SMART:SM00385
SUPFAM:SSF47954 GO:GO:0006383 GO:GO:0006359 eggNOG:COG1405
PANTHER:PTHR11618 EMBL:AF262374 HSSP:P61999
ProteinModelPortal:Q9NB72 SMR:Q9NB72 STRING:Q9NB72 PaxDb:Q9NB72
PRIDE:Q9NB72 FlyBase:FBgn0038499 InParanoid:Q9NB72
OrthoDB:EOG4SJ3VV ArrayExpress:Q9NB72 Bgee:Q9NB72 Uniprot:Q9NB72
Length = 662
Score = 152 (58.6 bits), Expect = 1.4e-09, Sum P(2) = 1.4e-09
Identities = 46/196 (23%), Positives = 87/196 (44%)
Query: 89 FGMSKYQNRRTMNSSDRALLNAIREINSMADRINLTKTIVDRANNLFKQVHDGKNL-KGR 147
+G K+Q S + + A ++I + ++ L++ D A N FK G++L +GR
Sbjct: 69 YGYGKFQVGSGTESREVTIKKAKKDITLLCQQLQLSQHYADTALNFFKMAL-GRHLTRGR 127
Query: 148 SNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGRCFKLILKALETSVDLITTGDF 207
+ I +AC+Y+ CR EG +I V +I E+GR + + AL ++ + +
Sbjct: 128 KSTHIYAACVYMTCRTEGTSHLLIDISDVQQICSYELGRTYLKLSHALCINIPSLDPCLY 187
Query: 208 MSRFCSNLSL---PNMVQKAATHIARKAVELDIVPGRSPIXXXXXXXXXXXXXXXDKRSQ 264
+ RF + L L + V A I ++ + + GR P R+
Sbjct: 188 IMRFANRLQLGAKTHEVSMTALRIVQRMKKDCMHSGRRPTGLCGAALLIAARMHDFSRTM 247
Query: 265 KEIGDIAGVAEVTIRQ 280
++ + + E T+R+
Sbjct: 248 LDVIGVVKIHESTLRK 263
Score = 57 (25.1 bits), Expect = 1.4e-09, Sum P(2) = 1.4e-09
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 18 EDYRAGDQICSECGLVVGDRVI 39
ED GD++C CG V+ D +I
Sbjct: 17 EDNARGDRVCMNCGSVLEDSLI 38
>ZFIN|ZDB-GENE-030131-6248 [details] [associations]
symbol:brf1b "BRF1 homolog, subunit of RNA
polymerase III transcription initiation factor IIIBb" species:7955
"Danio rerio" [GO:0017025 "TBP-class protein binding" evidence=IEA]
[GO:0006352 "DNA-dependent transcription, initiation" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000812 InterPro:IPR011665 InterPro:IPR013137
InterPro:IPR013150 Pfam:PF00382 Pfam:PF07741 Pfam:PF08271
PRINTS:PR00685 PROSITE:PS51134 ZFIN:ZDB-GENE-030131-6248
GO:GO:0005634 GO:GO:0045893 GO:GO:0008270 GO:GO:0006352
Gene3D:1.10.472.10 InterPro:IPR013763 SMART:SM00385 SUPFAM:SSF47954
PANTHER:PTHR11618 KO:K15196 HOVERGEN:HBG023540 HSSP:P61999
EMBL:BC060523 IPI:IPI00500469 RefSeq:NP_956183.1 UniGene:Dr.7329
ProteinModelPortal:Q6P9Z3 STRING:Q6P9Z3 GeneID:334316
KEGG:dre:334316 CTD:334316 InParanoid:Q6P9Z3 NextBio:20810348
Uniprot:Q6P9Z3
Length = 693
Score = 154 (59.3 bits), Expect = 3.1e-09, Sum P(2) = 3.1e-09
Identities = 42/182 (23%), Positives = 81/182 (44%)
Query: 102 SSDRALLNAIREINSMADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIAC 161
S + L N R+I+++ ++ L + +D A N FK V +GR + +ACLY+ C
Sbjct: 80 SRAQTLQNGKRQIHNLGSQLQLNQHCLDTAFNFFKMVVSKHLTRGRKMTHVIAACLYLVC 139
Query: 162 RQEGVPRTFKEICAVSKISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMV 221
R EG P ++ + +++ +G+ F L+ + L + + ++ RF L
Sbjct: 140 RTEGTPHMLLDLSDLLQVNVYILGKTFLLLARELCINAPAVDPCLYIPRFAHMLEFGEKT 199
Query: 222 QKAATHIAR--KAVELDIV-PGRSPIXXXXXXXXXXXXXXXDKRSQKEIGDIAGVAEVTI 278
+ + R + ++ D + GR P +R+ KE+ + V E T+
Sbjct: 200 HEVSMTALRLLQRMKRDWMHTGRRPSGLCGAALLVAARMHEFRRTVKEVISVVKVCETTL 259
Query: 279 RQ 280
R+
Sbjct: 260 RK 261
Score = 52 (23.4 bits), Expect = 3.1e-09, Sum P(2) = 3.1e-09
Identities = 19/62 (30%), Positives = 30/62 (48%)
Query: 19 DYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLSTMIG 78
D G +C+ CG V+ D +I SE + F GV S VG + +G+ + ++G
Sbjct: 16 DPARGSAVCTACGSVLEDNIIV--SEVQ-FVENSGGVS-SAVG--QFVSADGTSKAPVLG 69
Query: 79 PG 80
G
Sbjct: 70 SG 71
>UNIPROTKB|Q92994 [details] [associations]
symbol:BRF1 "Transcription factor IIIB 90 kDa subunit"
species:9606 "Homo sapiens" [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0017025 "TBP-class protein binding" evidence=IEA]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0043488 "regulation of mRNA stability"
evidence=IEA] [GO:0000126 "transcription factor TFIIIB complex"
evidence=NAS] [GO:0006384 "transcription initiation from RNA
polymerase III promoter" evidence=TAS] [GO:0009303 "rRNA
transcription" evidence=TAS] [GO:0009304 "tRNA transcription"
evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006383
"transcription from RNA polymerase III promoter" evidence=TAS]
[GO:0010467 "gene expression" evidence=TAS] Reactome:REACT_71
InterPro:IPR000812 InterPro:IPR011665 InterPro:IPR013137
InterPro:IPR013150 Pfam:PF00382 Pfam:PF07741 Pfam:PF08271
PRINTS:PR00685 PROSITE:PS51134 GO:GO:0005634 GO:GO:0045893
EMBL:CH471061 GO:GO:0046872 GO:GO:0008270 GO:GO:0006352
GO:GO:0009303 GO:GO:0043488 Gene3D:1.10.472.10 InterPro:IPR013763
SMART:SM00385 SUPFAM:SSF47954 Reactome:REACT_1788 eggNOG:COG1405
PANTHER:PTHR11618 PROSITE:PS00782 EMBL:AL512355 GO:GO:0006384
GO:GO:0000126 KO:K15196 EMBL:U28838 EMBL:U75276 EMBL:AJ297406
EMBL:AJ297407 EMBL:AJ297408 EMBL:AK096471 EMBL:AK294899
EMBL:AK295579 EMBL:BC016743 EMBL:BC071637 EMBL:BC086856
EMBL:BC103859 IPI:IPI00016859 IPI:IPI00157643 IPI:IPI00216075
IPI:IPI00334140 IPI:IPI00607889 IPI:IPI01011010 IPI:IPI01012378
PIR:I39065 RefSeq:NP_001229715.1 RefSeq:NP_001229716.1
RefSeq:NP_001229717.1 RefSeq:NP_001229718.1 RefSeq:NP_001229719.1
RefSeq:NP_001510.2 RefSeq:NP_663718.1 UniGene:Hs.424484
ProteinModelPortal:Q92994 SMR:Q92994 IntAct:Q92994
MINT:MINT-2859415 STRING:Q92994 PhosphoSite:Q92994 DMDM:20455319
PaxDb:Q92994 PRIDE:Q92994 Ensembl:ENST00000327359
Ensembl:ENST00000379937 Ensembl:ENST00000392557
Ensembl:ENST00000440513 Ensembl:ENST00000446501
Ensembl:ENST00000546474 Ensembl:ENST00000548421 GeneID:2972
KEGG:hsa:2972 UCSC:uc001yql.2 UCSC:uc010axg.1 CTD:2972
GeneCards:GC14M105675 HGNC:HGNC:11551 MIM:604902 neXtProt:NX_Q92994
PharmGKB:PA164741296 HOVERGEN:HBG023540 InParanoid:Q92994
OMA:YGCDGDE OrthoDB:EOG4NGGMJ PhylomeDB:Q92994 ChiTaRS:BRF1
GenomeRNAi:2972 NextBio:11787 ArrayExpress:Q92994 Bgee:Q92994
CleanEx:HS_BRF1 Genevestigator:Q92994 GermOnline:ENSG00000185024
GO:GO:0009304 Uniprot:Q92994
Length = 677
Score = 143 (55.4 bits), Expect = 8.5e-09, Sum P(2) = 8.5e-09
Identities = 42/182 (23%), Positives = 77/182 (42%)
Query: 102 SSDRALLNAIREINSMADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIAC 161
S + L N R I+ + +++ L + +D A N FK +GR + +ACLY+ C
Sbjct: 81 SRAQTLQNGRRHIHHLGNQLQLNQHCLDTAFNFFKMAVSRHLTRGRKMAHVIAACLYLVC 140
Query: 162 RQEGVPRTFKEICAVSKISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNM- 220
R EG P ++ + +++ +G+ F L+ + L + I ++ RF L
Sbjct: 141 RTEGTPHMLLDLSDLLQVNVYVLGKTFLLLARELCINAPAIDPCLYIPRFAHLLEFGEKN 200
Query: 221 --VQKAATHIARKAVELDIVPGRSPIXXXXXXXXXXXXXXXDKRSQKEIGDIAGVAEVTI 278
V A + ++ + GR P +R+ KE+ + V E T+
Sbjct: 201 HEVSMTALRLLQRMKRDWMHTGRRPSGLCGAALLVAARMHDFRRTVKEVISVVKVCESTL 260
Query: 279 RQ 280
R+
Sbjct: 261 RK 262
Score = 60 (26.2 bits), Expect = 8.5e-09, Sum P(2) = 8.5e-09
Identities = 21/62 (33%), Positives = 31/62 (50%)
Query: 19 DYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLSTMIG 78
D GD +C+ CG V+ D +I SE + E SG S VG + L+G+ + +G
Sbjct: 17 DAARGDAVCTACGSVLEDNIIV--SEVQFV--ESSGGGSSAVG--QFVSLDGAGKTPTLG 70
Query: 79 PG 80
G
Sbjct: 71 GG 72
>CGD|CAL0004048 [details] [associations]
symbol:BRF1 species:5476 "Candida albicans" [GO:0000126
"transcription factor TFIIIB complex" evidence=ISS] [GO:0006384
"transcription initiation from RNA polymerase III promoter"
evidence=ISS] [GO:0003677 "DNA binding" evidence=IEA] [GO:0000994
"RNA polymerase III core binding" evidence=IEA] [GO:0001156
"TFIIIC-class transcription factor binding" evidence=IEA]
[GO:0001112 "DNA-dependent transcriptional open complex formation"
evidence=IEA] [GO:0090074 "negative regulation of protein
homodimerization activity" evidence=IEA] [GO:0070898 "RNA
polymerase III transcriptional preinitiation complex assembly"
evidence=IEA] [GO:0070893 "transposon integration" evidence=IEA]
InterPro:IPR000812 InterPro:IPR011665 InterPro:IPR013137
InterPro:IPR013150 Pfam:PF00382 Pfam:PF07741 Pfam:PF08271
PRINTS:PR00685 PROSITE:PS51134 CGD:CAL0004048 GO:GO:0045893
GO:GO:0046872 GO:GO:0008270 Gene3D:1.10.472.10 InterPro:IPR013763
SMART:SM00385 SUPFAM:SSF47954 eggNOG:COG1405 PANTHER:PTHR11618
PROSITE:PS00782 EMBL:AACQ01000165 EMBL:AACQ01000186 GO:GO:0006384
GO:GO:0000126 InterPro:IPR023486 EMBL:Z47202 PIR:B55483
RefSeq:XP_711715.1 RefSeq:XP_712189.1 ProteinModelPortal:P43072
SMR:P43072 STRING:P43072 GeneID:3646221 GeneID:3646689
KEGG:cal:CaO19.13970 KEGG:cal:CaO19.6649 KO:K15196 Uniprot:P43072
Length = 553
Score = 156 (60.0 bits), Expect = 9.6e-09, Sum P(2) = 9.6e-09
Identities = 55/209 (26%), Positives = 91/209 (43%)
Query: 76 MIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADRINLTKTIVDRANNLF 135
M+G + A+F G G QN M S ++ L N R+I +A + + I + A F
Sbjct: 63 MVGADQARATFAG-GR---QN--AMESREQTLSNGKRKIKRIAAALKIPDYIAEAAGEWF 116
Query: 136 KQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGRCFKLILKAL 195
+ ++GR ++ + + CLY+ACR+E + + +IS +G F ++KAL
Sbjct: 117 RLALTLNFVQGRRSNNVLATCLYVACRKERTHHMLIDFSSRLQISVYSLGATFLKMVKAL 176
Query: 196 E-TSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVEL--D-IVPGRSPIXXXXXXX 251
TS+ L F+ F L + K A + A + D I GR P
Sbjct: 177 HITSLPLADPSLFIQHFVEKLDFKDKATKVAKDAVKLAHRMAADWIHEGRRPAGIAGACV 236
Query: 252 XXXXXXXXDKRSQKEIGDIAGVAEVTIRQ 280
+RS EI ++ V E T+++
Sbjct: 237 LLAARMNNFRRSHAEIVAVSHVGEETLQR 265
Score = 42 (19.8 bits), Expect = 9.6e-09, Sum P(2) = 9.6e-09
Identities = 12/43 (27%), Positives = 20/43 (46%)
Query: 22 AGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPE 64
AGD C CG V+ + I ++ S+ + V + VG +
Sbjct: 26 AGDVSCLRCGTVLEENPIVSEVQFGESSSGAAMVQGAMVGADQ 68
>UNIPROTKB|P43072 [details] [associations]
symbol:TDS4 "Transcription factor IIIB 70 kDa subunit"
species:237561 "Candida albicans SC5314" [GO:0000126 "transcription
factor TFIIIB complex" evidence=ISS] [GO:0006384 "transcription
initiation from RNA polymerase III promoter" evidence=ISS]
InterPro:IPR000812 InterPro:IPR011665 InterPro:IPR013137
InterPro:IPR013150 Pfam:PF00382 Pfam:PF07741 Pfam:PF08271
PRINTS:PR00685 PROSITE:PS51134 CGD:CAL0004048 GO:GO:0045893
GO:GO:0046872 GO:GO:0008270 Gene3D:1.10.472.10 InterPro:IPR013763
SMART:SM00385 SUPFAM:SSF47954 eggNOG:COG1405 PANTHER:PTHR11618
PROSITE:PS00782 EMBL:AACQ01000165 EMBL:AACQ01000186 GO:GO:0006384
GO:GO:0000126 InterPro:IPR023486 EMBL:Z47202 PIR:B55483
RefSeq:XP_711715.1 RefSeq:XP_712189.1 ProteinModelPortal:P43072
SMR:P43072 STRING:P43072 GeneID:3646221 GeneID:3646689
KEGG:cal:CaO19.13970 KEGG:cal:CaO19.6649 KO:K15196 Uniprot:P43072
Length = 553
Score = 156 (60.0 bits), Expect = 9.6e-09, Sum P(2) = 9.6e-09
Identities = 55/209 (26%), Positives = 91/209 (43%)
Query: 76 MIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADRINLTKTIVDRANNLF 135
M+G + A+F G G QN M S ++ L N R+I +A + + I + A F
Sbjct: 63 MVGADQARATFAG-GR---QN--AMESREQTLSNGKRKIKRIAAALKIPDYIAEAAGEWF 116
Query: 136 KQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGRCFKLILKAL 195
+ ++GR ++ + + CLY+ACR+E + + +IS +G F ++KAL
Sbjct: 117 RLALTLNFVQGRRSNNVLATCLYVACRKERTHHMLIDFSSRLQISVYSLGATFLKMVKAL 176
Query: 196 E-TSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVEL--D-IVPGRSPIXXXXXXX 251
TS+ L F+ F L + K A + A + D I GR P
Sbjct: 177 HITSLPLADPSLFIQHFVEKLDFKDKATKVAKDAVKLAHRMAADWIHEGRRPAGIAGACV 236
Query: 252 XXXXXXXXDKRSQKEIGDIAGVAEVTIRQ 280
+RS EI ++ V E T+++
Sbjct: 237 LLAARMNNFRRSHAEIVAVSHVGEETLQR 265
Score = 42 (19.8 bits), Expect = 9.6e-09, Sum P(2) = 9.6e-09
Identities = 12/43 (27%), Positives = 20/43 (46%)
Query: 22 AGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPE 64
AGD C CG V+ + I ++ S+ + V + VG +
Sbjct: 26 AGDVSCLRCGTVLEENPIVSEVQFGESSSGAAMVQGAMVGADQ 68
>MGI|MGI:1919558 [details] [associations]
symbol:Brf1 "BRF1 homolog, subunit of RNA polymerase III
transcription initiation factor IIIB (S. cerevisiae)" species:10090
"Mus musculus" [GO:0003674 "molecular_function" evidence=ND]
[GO:0003743 "translation initiation factor activity" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006352 "DNA-dependent transcription, initiation"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006413 "translational initiation"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0017025 "TBP-class protein binding" evidence=IEA] [GO:0043488
"regulation of mRNA stability" evidence=IMP] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] InterPro:IPR000812
InterPro:IPR011665 InterPro:IPR013137 InterPro:IPR013150
Pfam:PF00382 Pfam:PF07741 Pfam:PF08271 PRINTS:PR00685
PROSITE:PS51134 MGI:MGI:1919558 GO:GO:0005634 GO:GO:0045893
GO:GO:0046872 GO:GO:0008270 GO:GO:0006352 GO:GO:0043488
Gene3D:1.10.472.10 InterPro:IPR013763 SMART:SM00385 SUPFAM:SSF47954
eggNOG:COG1405 PANTHER:PTHR11618 PROSITE:PS00782 HOVERGEN:HBG023540
OrthoDB:EOG4NGGMJ EMBL:BC037224 IPI:IPI00319141 UniGene:Mm.196721
ProteinModelPortal:Q8CFK2 SMR:Q8CFK2 STRING:Q8CFK2
PhosphoSite:Q8CFK2 PRIDE:Q8CFK2 UCSC:uc007pfn.1
HOGENOM:HOG000198688 InParanoid:Q8CFK2 Genevestigator:Q8CFK2
GermOnline:ENSMUSG00000011158 Uniprot:Q8CFK2
Length = 676
Score = 142 (55.0 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
Identities = 42/182 (23%), Positives = 76/182 (41%)
Query: 102 SSDRALLNAIREINSMADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIAC 161
S + L N R I+ + ++ L + +D A N FK +GR + +ACLY+ C
Sbjct: 81 SRAQTLQNGRRHIHHLGSQLQLNQHCLDTAFNFFKMAVSKHLTRGRKMAHVIAACLYLVC 140
Query: 162 RQEGVPRTFKEICAVSKISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNM- 220
R EG P ++ + +++ +G+ F L+ + L + I ++ RF L
Sbjct: 141 RTEGTPHMLLDLSDLLQVNVYVLGKTFLLLARELCINAPAIDPCLYIPRFAHLLEFGEKN 200
Query: 221 --VQKAATHIARKAVELDIVPGRSPIXXXXXXXXXXXXXXXDKRSQKEIGDIAGVAEVTI 278
V A + ++ + GR P +R+ KE+ + V E T+
Sbjct: 201 HEVSMTALRLLQRMKRDWMHTGRRPSGLCGAALLVAARMHDFRRTVKEVISVVKVCESTL 260
Query: 279 RQ 280
R+
Sbjct: 261 RK 262
Score = 60 (26.2 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
Identities = 21/62 (33%), Positives = 31/62 (50%)
Query: 19 DYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLSTMIG 78
D GD +C+ CG V+ D +I SE + N SG S VG + L+G+ + +G
Sbjct: 17 DAARGDAVCTGCGSVLEDNIIV--SEVQFVEN--SGGGSSAVG--QFVSLDGAGKTPTLG 70
Query: 79 PG 80
G
Sbjct: 71 GG 72
>POMBASE|SPBC13E7.10c [details] [associations]
symbol:brf1 "transcription factor TFIIIB complex
subunit Brf1" species:4896 "Schizosaccharomyces pombe" [GO:0000126
"transcription factor TFIIIB complex" evidence=IDA] [GO:0005634
"nucleus" evidence=IDA] [GO:0006384 "transcription initiation from
RNA polymerase III promoter" evidence=TAS] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IEA] InterPro:IPR000812
InterPro:IPR011665 InterPro:IPR013137 InterPro:IPR013150
Pfam:PF00382 Pfam:PF07741 Pfam:PF08271 PRINTS:PR00685
PROSITE:PS51134 PomBase:SPBC13E7.10c GO:GO:0045893 GO:GO:0046872
EMBL:CU329671 GO:GO:0008270 GenomeReviews:CU329671_GR
Gene3D:1.10.472.10 InterPro:IPR013763 SMART:SM00385 SUPFAM:SSF47954
eggNOG:COG1405 PANTHER:PTHR11618 PROSITE:PS00782 GO:GO:0006384
GO:GO:0000126 HOGENOM:HOG000198688 PIR:T40176 RefSeq:NP_596265.2
STRING:Q9P6R0 EnsemblFungi:SPBC13E7.10c.1 GeneID:2540071
OrthoDB:EOG40P7GP NextBio:20801208 Uniprot:Q9P6R0
Length = 492
Score = 157 (60.3 bits), Expect = 1.2e-08, P = 1.2e-08
Identities = 43/195 (22%), Positives = 87/195 (44%)
Query: 89 FGMSKYQNRRTMNSSDRALLNAIREINSMADRINLTKTIVDRANNLFKQVHDGKNLKGRS 148
FG Y+N+ ++ S + + N R I+++A + L + ++ A F + +KGR
Sbjct: 65 FG-GPYRNQGSVESRELTIANGRRRISALAIALKLNERHIEAAVRYFTLAINNNFIKGRR 123
Query: 149 NDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGRCFKLILKALETSVDLITTGDFM 208
+ + ++CLYI CR + + +I+ ++G F + + L ++ L+ ++
Sbjct: 124 SQYVVASCLYIVCRISKTSHMLIDFSDILQINVFKLGSTFLKLCRVLRPNLPLLDPSLYI 183
Query: 209 SRFCSNLSLPNMVQKAATHIARKAVELD---IVPGRSPIXXXXXXXXXXXXXXXDKRSQK 265
SRF S L + A R ++ + GR P +RS +
Sbjct: 184 SRFASLLEFGPETHRVANDAIRLVARMNRDWMQIGRRPAGICGACLLIAARMNNFRRSVR 243
Query: 266 EIGDIAGVAEVTIRQ 280
E+ + VA++TI++
Sbjct: 244 EVVHVVKVADITIQK 258
>DICTYBASE|DDB_G0281215 [details] [associations]
symbol:brf1 "transcription factor IIIB subunit"
species:44689 "Dictyostelium discoideum" [GO:0006383 "transcription
from RNA polymerase III promoter" evidence=ISS] [GO:0005634
"nucleus" evidence=IEA;IC] [GO:0000126 "transcription factor TFIIIB
complex" evidence=IDA] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0017025 "TBP-class
protein binding" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006352 "DNA-dependent
transcription, initiation" evidence=IEA] [GO:0006384 "transcription
initiation from RNA polymerase III promoter" evidence=ISS]
InterPro:IPR000812 InterPro:IPR011665 InterPro:IPR013150
Pfam:PF00382 Pfam:PF07741 PRINTS:PR00685 dictyBase:DDB_G0281215
GO:GO:0045893 GenomeReviews:CM000152_GR EMBL:AAFI02000040
GO:GO:0008270 Gene3D:1.10.472.10 InterPro:IPR013763 SMART:SM00385
SUPFAM:SSF47954 eggNOG:COG1405 PANTHER:PTHR11618 InterPro:IPR021752
Pfam:PF11781 GO:GO:0006384 GO:GO:0000126 KO:K15196
RefSeq:XP_640891.1 ProteinModelPortal:Q54U85 STRING:Q54U85
EnsemblProtists:DDB0231089 GeneID:8622948 KEGG:ddi:DDB_G0281215
InParanoid:Q54U85 OMA:CASENSQ Uniprot:Q54U85
Length = 706
Score = 158 (60.7 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 52/207 (25%), Positives = 90/207 (43%)
Query: 82 GDASFDGFGMS---KYQNRRTMNSSD-RALL--NAIREINSMADRINLTKTIVDRANNLF 135
GD+S G +S K + R++ D RA+ NA ++++ + + + + ++D A F
Sbjct: 43 GDSSIVGTFVSATRKPSSYRSLGGRDSRAMSVENARKKLDQIGNSLRIRSHLIDSAQRTF 102
Query: 136 KQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGRCFKLILKAL 195
+ + KGR +A+ACLYI CR+E P + +++ + F ++K L
Sbjct: 103 ELAMENNFTKGRQTRLVAAACLYIVCRRERTPHLLIDFSENLQVNVFIVAGTFLQLIKLL 162
Query: 196 ETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAV---ELDIVP-GRSPIXXXXXXX 251
+ ++ F+ RF S L + K A K V + D + GR P
Sbjct: 163 NIQLPIVDPSFFIQRFASALEFGDQT-KDVIATANKLVARMKRDWMSIGRKPSGICGASL 221
Query: 252 XXXXXXXXDKRSQKEIGDIAGVAEVTI 278
KRS KEI + + E T+
Sbjct: 222 YIASKIHGFKRSMKEIVHVVKIGEQTL 248
>UNIPROTKB|F1PRK4 [details] [associations]
symbol:BRF1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0043488 "regulation of mRNA stability"
evidence=IEA] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0017025 "TBP-class protein
binding" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006352 "DNA-dependent transcription, initiation" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR000812
InterPro:IPR011665 InterPro:IPR013150 Pfam:PF00382 Pfam:PF07741
PRINTS:PR00685 GO:GO:0005634 GO:GO:0045893 GO:GO:0008270
GO:GO:0006352 GO:GO:0043488 Gene3D:1.10.472.10 InterPro:IPR013763
SMART:SM00385 SUPFAM:SSF47954 PANTHER:PTHR11618 OMA:YGCDGDE
GeneTree:ENSGT00390000010349 EMBL:AAEX03006120 EMBL:AAEX03006121
Ensembl:ENSCAFT00000029237 Uniprot:F1PRK4
Length = 616
Score = 145 (56.1 bits), Expect = 3.9e-07, P = 3.9e-07
Identities = 42/182 (23%), Positives = 78/182 (42%)
Query: 102 SSDRALLNAIREINSMADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIAC 161
S + L N R+I+ + +++ L + +D A N FK +GR + +ACLY+ C
Sbjct: 20 SRAQTLQNGRRQIHHLGNQLQLNQHCLDTAFNFFKMAVSKHLTRGRKMAHVIAACLYLVC 79
Query: 162 RQEGVPRTFKEICAVSKISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNM- 220
R EG P ++ + +++ +G+ F L+ + L + I ++ RF L
Sbjct: 80 RTEGTPHMLLDLSDLLQVNVYVLGKTFLLLARELCINAPAIDPCLYIPRFAHLLEFGEKN 139
Query: 221 --VQKAATHIARKAVELDIVPGRSPIXXXXXXXXXXXXXXXDKRSQKEIGDIAGVAEVTI 278
V A + ++ + GR P +R+ KE+ + V E T+
Sbjct: 140 HEVSMTALRLLQRMKRDWMHTGRRPSGLCGAALLVAARMHDFRRTVKEVISVVKVCESTL 199
Query: 279 RQ 280
R+
Sbjct: 200 RK 201
>UNIPROTKB|G3X7R9 [details] [associations]
symbol:G3X7R9 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0043488 "regulation of mRNA stability" evidence=IEA]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0017025 "TBP-class protein binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0006352
"DNA-dependent transcription, initiation" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR000812 InterPro:IPR011665
InterPro:IPR013150 Pfam:PF00382 Pfam:PF07741 PRINTS:PR00685
GO:GO:0005634 GO:GO:0045893 GO:GO:0008270 GO:GO:0006352
GO:GO:0043488 Gene3D:1.10.472.10 InterPro:IPR013763 SMART:SM00385
SUPFAM:SSF47954 PANTHER:PTHR11618 OMA:YGCDGDE
GeneTree:ENSGT00390000010349 EMBL:DAAA02053372 EMBL:DAAA02053373
EMBL:DAAA02053374 EMBL:DAAA02053375 EMBL:DAAA02053376
Ensembl:ENSBTAT00000044278 Uniprot:G3X7R9
Length = 639
Score = 137 (53.3 bits), Expect = 3.3e-06, P = 3.3e-06
Identities = 49/209 (23%), Positives = 83/209 (39%)
Query: 78 GPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADRINLTKTIVDRANNLFKQ 137
G G+ GF +S + R + L N R+I+ + +++ L + +D A N FK
Sbjct: 1 GAGKAPTLGGGFHVSLGKESRA-----QTLQNGRRQIHHLGNQLQLNQHCLDTAFNFFKM 55
Query: 138 VHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKK--EIGRCFKLILKAL 195
+GR + +ACLY+ CR EG PR + + S E R F +I + L
Sbjct: 56 AVSKHLTRGRRTAHVVAACLYLVCRTEGTPRILRHLAVHGGFSVHVFESNRTFLVISRYL 115
Query: 196 ETSVDLITTGD-FMSRFCSNLSLPNM---VQKAATHIARKAVELDIVPGRSPIXXXXXXX 251
+ + ++ RF L V A + ++ + GR P
Sbjct: 116 CVEAEALRNPCLYIPRFAHLLEFGEKNHEVSMTALRLLQRMKRDWMHTGRRPSGLCGAAL 175
Query: 252 XXXXXXXXDKRSQKEIGDIAGVAEVTIRQ 280
+R+ KE+ + V E T+R+
Sbjct: 176 LVAARMHDFRRTVKEVISVVKVCESTLRK 204
>UNIPROTKB|E2R245 [details] [associations]
symbol:BRF2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006352 "DNA-dependent transcription, initiation"
evidence=IEA] InterPro:IPR000812 InterPro:IPR013137 Pfam:PF08271
PROSITE:PS51134 GO:GO:0006355 GO:GO:0008270 GO:GO:0006352
Gene3D:1.10.472.10 InterPro:IPR013763 SMART:SM00385 SUPFAM:SSF47954
CTD:55290 GeneTree:ENSGT00390000002288 KO:K15197 OMA:CMLKPPK
PANTHER:PTHR11618 EMBL:AAEX03010394 RefSeq:XP_850010.1
ProteinModelPortal:E2R245 Ensembl:ENSCAFT00000010003 GeneID:608026
KEGG:cfa:608026 NextBio:20893707 Uniprot:E2R245
Length = 421
Score = 110 (43.8 bits), Expect = 1.4e-05, Sum P(2) = 1.4e-05
Identities = 31/132 (23%), Positives = 53/132 (40%)
Query: 89 FGMSKYQNRRTMNSSDRALLNAIREINSMADRINLTKTIVDRANNLFKQV--HDG-KNLK 145
+ S +N + S R L R + + + L T D A ++Q H G + +
Sbjct: 55 YSRSTGENEQVSRSQQRGL----RRVRDLCRVLQLPSTFEDTAVAYYQQAYRHSGIRAAR 110
Query: 146 GRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGRCFKLILKALETSVDLITTG 205
+ + + C+ I CRQ P T ICA+ + + I+K L V +
Sbjct: 111 LQKKEVLVGCCVLITCRQHNWPLTMGTICALLYADLEVFSGTYMQIVKLLGLDVPSLCLA 170
Query: 206 DFMSRFCSNLSL 217
D + +CS+ L
Sbjct: 171 DLVKTYCSSFKL 182
Score = 60 (26.2 bits), Expect = 1.4e-05, Sum P(2) = 1.4e-05
Identities = 16/46 (34%), Positives = 24/46 (52%)
Query: 8 CYEHPDAPLIED--YRAGDQICSECGLVVGDRVIDVGSEWRTFSNE 51
C + A L++D Y +CS+CG VV + V+ TFS+E
Sbjct: 7 CPDCGSAELVDDSHYSQSQLVCSDCGCVVTEGVLTT-----TFSDE 47
>UNIPROTKB|E5RGX1 [details] [associations]
symbol:BRF2 "Transcription factor IIIB 50 kDa subunit"
species:9606 "Homo sapiens" [GO:0006352 "DNA-dependent
transcription, initiation" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] InterPro:IPR000812 InterPro:IPR013137
Pfam:PF08271 PROSITE:PS51134 GO:GO:0006355 GO:GO:0008270
GO:GO:0006352 EMBL:AC130304 Gene3D:1.10.472.10 InterPro:IPR013763
SMART:SM00385 SUPFAM:SSF47954 PANTHER:PTHR11618 HGNC:HGNC:17298
ChiTaRS:BRF2 EMBL:AC138356 IPI:IPI00797395
ProteinModelPortal:E5RGX1 SMR:E5RGX1 Ensembl:ENST00000520601
ArrayExpress:E5RGX1 Bgee:E5RGX1 Uniprot:E5RGX1
Length = 202
Score = 100 (40.3 bits), Expect = 1.4e-05, Sum P(2) = 1.4e-05
Identities = 29/130 (22%), Positives = 51/130 (39%)
Query: 89 FGMSKYQNRRTMNSSDRALLNAIREINSMADRINLTKTIVDRANNLFKQV--HDG-KNLK 145
+ S +N + S R L R + + + L T D A ++Q H G + +
Sbjct: 55 YSRSTGENEQVSRSQQRGL----RRVRDLCRVLQLPPTFEDTAVAYYQQAYRHSGIRAAR 110
Query: 146 GRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGRCFKLILKALETSVDLITTG 205
+ + + C+ I CRQ P T IC + + I+K L V +
Sbjct: 111 LQKKEVLVGCCVLITCRQHNWPLTMGAICTLLYADLDVFSSTYMQIVKLLGLDVPSLCLA 170
Query: 206 DFMSRFCSNL 215
+ + +CS+L
Sbjct: 171 ELVKTYCSSL 180
Score = 59 (25.8 bits), Expect = 1.4e-05, Sum P(2) = 1.4e-05
Identities = 16/46 (34%), Positives = 23/46 (50%)
Query: 8 CYEHPDAPLIED--YRAGDQICSECGLVVGDRVIDVGSEWRTFSNE 51
C + L+ED Y +CS+CG VV + V+ TFS+E
Sbjct: 7 CPDCGSTELVEDSHYSQSQLVCSDCGCVVTEGVLTT-----TFSDE 47
>UNIPROTKB|Q29S07 [details] [associations]
symbol:BRF2 "Transcription factor IIIB 50 kDa subunit"
species:9913 "Bos taurus" [GO:0005634 "nucleus" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006352 "DNA-dependent transcription, initiation" evidence=IEA]
InterPro:IPR000812 InterPro:IPR013137 Pfam:PF08271 PROSITE:PS51134
GO:GO:0005634 GO:GO:0006355 GO:GO:0046872 GO:GO:0008270
GO:GO:0006352 Gene3D:1.10.472.10 InterPro:IPR013763 SMART:SM00385
SUPFAM:SSF47954 EMBL:BT020651 EMBL:BT020781 EMBL:BT020876
EMBL:BT020884 EMBL:BT020898 EMBL:BC113270 IPI:IPI00704336
RefSeq:NP_001015582.1 UniGene:Bt.37205 ProteinModelPortal:Q29S07
STRING:Q29S07 Ensembl:ENSBTAT00000039838 GeneID:512789
KEGG:bta:512789 CTD:55290 eggNOG:COG1405
GeneTree:ENSGT00390000002288 HOGENOM:HOG000095260
HOVERGEN:HBG107537 InParanoid:Q29S07 KO:K15197 OMA:CMLKPPK
OrthoDB:EOG457574 NextBio:20870558 PANTHER:PTHR11618
PROSITE:PS00782 Uniprot:Q29S07
Length = 421
Score = 106 (42.4 bits), Expect = 2.0e-05, Sum P(2) = 2.0e-05
Identities = 31/132 (23%), Positives = 52/132 (39%)
Query: 89 FGMSKYQNRRTMNSSDRALLNAIREINSMADRINLTKTIVDRANNLFKQVHD--G-KNLK 145
+ S +N + S R L R + + + L T D A ++Q H G + +
Sbjct: 55 YSRSTGENEQVSRSQQRGL----RRVRDLCRVLQLPPTFEDTAVAYYQQAHQLAGIRTAR 110
Query: 146 GRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGRCFKLILKALETSVDLITTG 205
+ + +A C+ I CRQ P T IC + + I+K L V +
Sbjct: 111 LQKKEVLAGCCVLITCRQRNWPLTMGTICTLLYADLDVFSGTYMQIVKLLGLDVPSLCLV 170
Query: 206 DFMSRFCSNLSL 217
D + +CS+ L
Sbjct: 171 DLVKTYCSSFKL 182
Score = 63 (27.2 bits), Expect = 2.0e-05, Sum P(2) = 2.0e-05
Identities = 17/46 (36%), Positives = 24/46 (52%)
Query: 8 CYEHPDAPLIED--YRAGDQICSECGLVVGDRVIDVGSEWRTFSNE 51
C + A L+ED Y +CS+CG VV + V+ TFS+E
Sbjct: 7 CPDCGSAELVEDSHYSQNQLVCSDCGCVVTEGVLTT-----TFSDE 47
>TAIR|locus:2055600 [details] [associations]
symbol:AT2G45100 species:3702 "Arabidopsis thaliana"
[GO:0003743 "translation initiation factor activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM;IEA] [GO:0006352 "DNA-dependent
transcription, initiation" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA;ISS] [GO:0006413
"translational initiation" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0010440 "stomatal
lineage progression" evidence=RCA] InterPro:IPR000812
InterPro:IPR011665 InterPro:IPR013150 Pfam:PF00382 Pfam:PF07741
GO:GO:0005634 GO:GO:0045893 EMBL:CP002685 GO:GO:0008270
GO:GO:0006352 Gene3D:1.10.472.10 InterPro:IPR013763 SMART:SM00385
SUPFAM:SSF47954 PANTHER:PTHR11618 KO:K15196 IPI:IPI00532450
RefSeq:NP_182035.2 UniGene:At.50139 ProteinModelPortal:F4IW19
SMR:F4IW19 PRIDE:F4IW19 EnsemblPlants:AT2G45100.1 GeneID:819117
KEGG:ath:AT2G45100 OMA:LYITENH Uniprot:F4IW19
Length = 557
Score = 128 (50.1 bits), Expect = 2.8e-05, P = 2.8e-05
Identities = 51/222 (22%), Positives = 90/222 (40%)
Query: 69 NGSDLSTMIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSMADRINL---TK 125
N S T + G + G + Q+ + +S +R + A E+ ++ D + +
Sbjct: 34 NFSTEVTFVKNAAGQSQASGNILKSVQSGMS-SSRERIIRKATDELMNLRDALGIGDDRD 92
Query: 126 TIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIG 185
++ A+N F+ D KGRS + + S+CLY+ CRQ + + + ++S ++G
Sbjct: 93 DVIVMASNFFRIALDHNFTKGRSKELVFSSCLYLTCRQFKLAVLLIDFSSYLRVSVYDLG 152
Query: 186 R-----CFKLILKALETSVDLITTGDFMSRFCSNLSLP----NMVQKAATHIARKAVELD 236
C L + L+ F+ RF SN+ L N + ATHI
Sbjct: 153 SVYLQLCDMLYITENHNYEKLVDPSIFIPRF-SNMLLKGAHNNKLVLTATHIIASMKRDW 211
Query: 237 IVPGRSPIXXXXXXXXXXXXXXXDKRSQKEIGDIAGVAEVTI 278
+ GR P K S+ +I +I + E T+
Sbjct: 212 MQTGRKPSGICGAALYTAALSHGIKCSKTDIVNIVHICEATL 253
>UNIPROTKB|F1RX86 [details] [associations]
symbol:BRF2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0006352 "DNA-dependent transcription, initiation" evidence=IEA]
InterPro:IPR000812 InterPro:IPR013137 Pfam:PF08271 PROSITE:PS51134
GO:GO:0006355 GO:GO:0008270 GO:GO:0006352 Gene3D:1.10.472.10
InterPro:IPR013763 SMART:SM00385 SUPFAM:SSF47954
GeneTree:ENSGT00390000002288 KO:K15197 OMA:CMLKPPK
PANTHER:PTHR11618 CTD:678 EMBL:FP236525 RefSeq:XP_003133415.3
UniGene:Ssc.2423 Ensembl:ENSSSCT00000024753 GeneID:100524530
KEGG:ssc:100524530 Uniprot:F1RX86
Length = 417
Score = 100 (40.3 bits), Expect = 0.00023, Sum P(2) = 0.00023
Identities = 27/132 (20%), Positives = 50/132 (37%)
Query: 89 FGMSKYQNRRTMNSSDRALLNAIREINSMADRINLTKTIVDRANNLFKQVHDGKNLKG-- 146
+ S +N + S R L R + + + L T D A ++Q + ++
Sbjct: 55 YSRSTGENEQVSRSQQRGL----RRVRDLCRVLQLPPTFEDTAVAYYQQAYQHSGIRAAR 110
Query: 147 -RSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGRCFKLILKALETSVDLITTG 205
+ + + C+ I CRQ P T IC + + ++K L V +
Sbjct: 111 LQKKEVLVGCCVLITCRQRNWPLTMGTICTLIYADLDVFSGTYMQMVKLLGLDVPSLCLA 170
Query: 206 DFMSRFCSNLSL 217
D + +CS+ L
Sbjct: 171 DLVKTYCSSFKL 182
Score = 59 (25.8 bits), Expect = 0.00023, Sum P(2) = 0.00023
Identities = 16/46 (34%), Positives = 23/46 (50%)
Query: 8 CYEHPDAPLIED--YRAGDQICSECGLVVGDRVIDVGSEWRTFSNE 51
C + L+ED Y +CS+CG VV + V+ TFS+E
Sbjct: 7 CPDCGSTELVEDSHYSQSQLVCSDCGCVVTEGVLTT-----TFSDE 47
>UNIPROTKB|Q9HAW0 [details] [associations]
symbol:BRF2 "Transcription factor IIIB 50 kDa subunit"
species:9606 "Homo sapiens" [GO:0006352 "DNA-dependent
transcription, initiation" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0006383 "transcription from RNA polymerase III
promoter" evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
Reactome:REACT_71 InterPro:IPR000812 InterPro:IPR013137
Pfam:PF08271 PROSITE:PS51134 GO:GO:0005654 GO:GO:0006355
EMBL:CH471080 GO:GO:0046872 GO:GO:0008270 GO:GO:0006352
Gene3D:1.10.472.10 InterPro:IPR013763 SMART:SM00385 SUPFAM:SSF47954
Reactome:REACT_1788 GO:GO:0006383 CTD:55290 eggNOG:COG1405
HOGENOM:HOG000095260 HOVERGEN:HBG107537 KO:K15197 OMA:CMLKPPK
OrthoDB:EOG457574 PANTHER:PTHR11618 PROSITE:PS00782 EMBL:AF298153
EMBL:AF206673 EMBL:AK001914 EMBL:AK315420 EMBL:BC010648
EMBL:AF130058 IPI:IPI00301190 RefSeq:NP_060780.2 UniGene:Hs.709301
ProteinModelPortal:Q9HAW0 SMR:Q9HAW0 STRING:Q9HAW0
PhosphoSite:Q9HAW0 DMDM:74734246 PRIDE:Q9HAW0 DNASU:55290
Ensembl:ENST00000220659 GeneID:55290 KEGG:hsa:55290 UCSC:uc003xkk.3
GeneCards:GC08M037701 HGNC:HGNC:17298 HPA:CAB019269 HPA:HPA023378
MIM:607013 neXtProt:NX_Q9HAW0 PharmGKB:PA164741329
InParanoid:Q9HAW0 PhylomeDB:Q9HAW0 ChiTaRS:BRF2 GenomeRNAi:55290
NextBio:59474 ArrayExpress:Q9HAW0 Bgee:Q9HAW0 CleanEx:HS_BRF2
Genevestigator:Q9HAW0 Uniprot:Q9HAW0
Length = 419
Score = 100 (40.3 bits), Expect = 0.00024, Sum P(2) = 0.00024
Identities = 29/132 (21%), Positives = 51/132 (38%)
Query: 89 FGMSKYQNRRTMNSSDRALLNAIREINSMADRINLTKTIVDRANNLFKQV--HDG-KNLK 145
+ S +N + S R L R + + + L T D A ++Q H G + +
Sbjct: 55 YSRSTGENEQVSRSQQRGL----RRVRDLCRVLQLPPTFEDTAVAYYQQAYRHSGIRAAR 110
Query: 146 GRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGRCFKLILKALETSVDLITTG 205
+ + + C+ I CRQ P T IC + + I+K L V +
Sbjct: 111 LQKKEVLVGCCVLITCRQHNWPLTMGAICTLLYADLDVFSSTYMQIVKLLGLDVPSLCLA 170
Query: 206 DFMSRFCSNLSL 217
+ + +CS+ L
Sbjct: 171 ELVKTYCSSFKL 182
Score = 59 (25.8 bits), Expect = 0.00024, Sum P(2) = 0.00024
Identities = 16/46 (34%), Positives = 23/46 (50%)
Query: 8 CYEHPDAPLIED--YRAGDQICSECGLVVGDRVIDVGSEWRTFSNE 51
C + L+ED Y +CS+CG VV + V+ TFS+E
Sbjct: 7 CPDCGSTELVEDSHYSQSQLVCSDCGCVVTEGVLTT-----TFSDE 47
>RGD|1308817 [details] [associations]
symbol:Brf2 "BRF2, subunit of RNA polymerase III transcription
initiation factor, BRF1-like" species:10116 "Rattus norvegicus"
[GO:0005634 "nucleus" evidence=IEA] [GO:0006352 "DNA-dependent
transcription, initiation" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] InterPro:IPR000812 InterPro:IPR013137
Pfam:PF08271 PROSITE:PS51134 RGD:1308817 GO:GO:0005634
GO:GO:0006355 GO:GO:0046872 GO:GO:0008270 GO:GO:0006352
Gene3D:1.10.472.10 InterPro:IPR013763 SMART:SM00385 SUPFAM:SSF47954
CTD:55290 eggNOG:COG1405 GeneTree:ENSGT00390000002288
HOGENOM:HOG000095260 HOVERGEN:HBG107537 KO:K15197 OMA:CMLKPPK
OrthoDB:EOG457574 PANTHER:PTHR11618 PROSITE:PS00782 EMBL:BC097435
IPI:IPI00191999 RefSeq:NP_001019944.1 UniGene:Rn.163328
ProteinModelPortal:Q4V8D6 STRING:Q4V8D6 PRIDE:Q4V8D6
Ensembl:ENSRNOT00000017324 GeneID:306542 KEGG:rno:306542
UCSC:RGD:1308817 InParanoid:Q4V8D6 NextBio:656184
Genevestigator:Q4V8D6 Uniprot:Q4V8D6
Length = 416
Score = 95 (38.5 bits), Expect = 0.00067, Sum P(2) = 0.00067
Identities = 26/132 (19%), Positives = 51/132 (38%)
Query: 89 FGMSKYQNRRTMNSSDRALLNAIREINSMADRINLTKTIVDRANNLFKQVHDGKNLKG-- 146
+ S +N + S R L R + + + L T + A + +++ + ++
Sbjct: 55 YSRSTGENEQVSRSQQRDL----RRVRDLCRILKLPLTFEETAVSYYQKAYQLSGIRAAR 110
Query: 147 -RSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGRCFKLILKALETSVDLITTG 205
+ + + C+ I CRQ P T IC + + I+K L V +
Sbjct: 111 LQKKEVVVGCCVLITCRQHNWPLTMGAICTLLYADLDVFSSTYMQIVKLLGLDVPSLCLA 170
Query: 206 DFMSRFCSNLSL 217
D + +CS+ L
Sbjct: 171 DLVKSYCSSFKL 182
Score = 60 (26.2 bits), Expect = 0.00067, Sum P(2) = 0.00067
Identities = 16/46 (34%), Positives = 24/46 (52%)
Query: 8 CYEHPDAPLIED--YRAGDQICSECGLVVGDRVIDVGSEWRTFSNE 51
C + + L+ED Y +CS+CG VV + V+ TFS+E
Sbjct: 7 CPDCGSSELVEDSHYSQSQLVCSDCGCVVTEGVLTT-----TFSDE 47
>ASPGD|ASPL0000037776 [details] [associations]
symbol:AN3116 species:162425 "Emericella nidulans"
[GO:0000126 "transcription factor TFIIIB complex" evidence=IEA]
[GO:0017025 "TBP-class protein binding" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0006413 "translational
initiation" evidence=IEA] [GO:0006352 "DNA-dependent transcription,
initiation" evidence=IEA] [GO:0003743 "translation initiation
factor activity" evidence=IEA] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IEA] InterPro:IPR000812
InterPro:IPR011665 InterPro:IPR013150 Pfam:PF00382 Pfam:PF07741
GO:GO:0005634 GO:GO:0045893 GO:GO:0008270 EMBL:BN001306
GO:GO:0006352 EMBL:AACD01000051 Gene3D:1.10.472.10
InterPro:IPR013763 SMART:SM00385 SUPFAM:SSF47954 eggNOG:COG1405
PANTHER:PTHR11618 KO:K15196 HOGENOM:HOG000198688 OMA:CRKERTH
RefSeq:XP_660720.1 ProteinModelPortal:Q5B8L4 STRING:Q5B8L4
EnsemblFungi:CADANIAT00009960 GeneID:2873798 KEGG:ani:AN3116.2
OrthoDB:EOG4SJ8P6 Uniprot:Q5B8L4
Length = 713
Score = 116 (45.9 bits), Expect = 0.00085, P = 0.00085
Identities = 45/160 (28%), Positives = 72/160 (45%)
Query: 131 ANNLFKQVHDGKN-LKGRSNDAIASACLYIACR-QEGVPRTFKEICAVSKISKKEIGRCF 188
A +FK + G N ++GR +A+ CLYIACR Q+G + V I+ ++GR +
Sbjct: 121 AGQVFK-LAVGLNFIQGRRTKTVAAVCLYIACRRQDGNTVMLIDFADVLMINVFKLGRTY 179
Query: 189 KLILKALET--SVDLITTGD---FMSRFCSNLSL-PNMVQKA--ATHIARKAVELDIVPG 240
K +L L +V L+ D + RF L P+ +Q A A I ++ + G
Sbjct: 180 KALLDELRLGGNVFLMNPIDPESLIYRFAKQLEFGPSTMQVASEAVRIVQRMNRDWMTTG 239
Query: 241 RSPIXXXXXXXXXXXXXXXDKRSQKEIGDIAGVAEVTIRQ 280
R P +R+ +E+ + V E+TI Q
Sbjct: 240 RRPAGICGAALILAARMNNFRRTVREVVYVVKVTEITISQ 279
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.319 0.136 0.401 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 309 294 0.00091 115 3 11 22 0.38 34
33 0.44 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 49
No. of states in DFA: 613 (65 KB)
Total size of DFA: 206 KB (2116 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 22.82u 0.10s 22.92t Elapsed: 00:00:01
Total cpu time: 22.82u 0.10s 22.92t Elapsed: 00:00:01
Start: Thu Aug 15 16:55:27 2013 End: Thu Aug 15 16:55:28 2013