RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6534
(309 letters)
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
DNA-binding, DNA- directed RNA polymerase, isopeptide
bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Length = 345
Score = 278 bits (712), Expect = 6e-93
Identities = 107/326 (32%), Positives = 168/326 (51%), Gaps = 18/326 (5%)
Query: 1 MNINKVC--CYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNE-KSGVDP 57
+NI C C + ++E + GD +C+ CGLV+ D+++D SEWRTFSN+ +G DP
Sbjct: 18 LNIVLTCPEC-KVYPPKIVERFSEGDVVCALCGLVLSDKLVDTRSEWRTFSNDDHNGDDP 76
Query: 58 SRVGGPENPLLNGSDLSTMIGPGRGDASFDGFGMSKYQNRRTMNSSDRALLNAIREINSM 117
SRVG NPLL+G++LST IG G ++K Q + M+ D + A +I +
Sbjct: 77 SRVGEASNPLLDGNNLSTRIGKGETTDMRFTKELNKAQGKNVMDKKDNEVQAAFAKITML 136
Query: 118 ADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVS 177
D L K + D A +K HD K LKG+S ++I +A + I CR+ V RTFKEI ++
Sbjct: 137 CDAAELPKIVKDCAKEAYKLCHDEKTLKGKSMESIMAASILIGCRRAEVARTFKEIQSLI 196
Query: 178 KISKKEIGRCFKLILKALE------------TSVDLITTGDFMSRFCSNLSLPNMVQKAA 225
+ KE G+ ++ L ++ ++ RFCS+L LP V +A
Sbjct: 197 HVKTKEFGKTLNIMKNILRGKSEDGFLKIDTDNMSGAQNLTYIPRFCSHLGLPMQVTTSA 256
Query: 226 THIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLM 285
+ A+K E+ + G+SPI++A +IY+ + ++G V E TI+ YK++
Sbjct: 257 EYTAKKCKEIKEIAGKSPITIAVVSIYLNILLFQIPITAAKVGQTLQVTEGTIKSGYKIL 316
Query: 286 YPHASKLFPQDFV--FHTPIHELPQL 309
Y H KL + + LP +
Sbjct: 317 YEHRDKLVDPQLIANGVVSLDNLPGV 342
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like
fold, helix-turn-helix, transcription/DNA complex; 2.65A
{Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A
2phg_A 1vol_A*
Length = 207
Score = 231 bits (591), Expect = 2e-76
Identities = 171/207 (82%), Positives = 190/207 (91%)
Query: 103 SDRALLNAIREINSMADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACR 162
SDRA++NA +EI +MADRINL + IVDR NNLFKQV++ K+LKGR+NDAIASACLYIACR
Sbjct: 1 SDRAMMNAFKEITTMADRINLPRNIVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACR 60
Query: 163 QEGVPRTFKEICAVSKISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQ 222
QEGVPRTFKEICAVS+ISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNL LP VQ
Sbjct: 61 QEGVPRTFKEICAVSRISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLCLPKQVQ 120
Query: 223 KAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSY 282
AATHIARKAVELD+VPGRSPISVAAAAIYMASQAS++KR+QKEIGDIAGVA+VTIRQSY
Sbjct: 121 MAATHIARKAVELDLVPGRSPISVAAAAIYMASQASAEKRTQKEIGDIAGVADVTIRQSY 180
Query: 283 KLMYPHASKLFPQDFVFHTPIHELPQL 309
+L+YP A LFP DF F TP+ +LPQL
Sbjct: 181 RLIYPRAPDLFPTDFKFDTPVDKLPQL 207
Score = 68.1 bits (166), Expect = 9e-14
Identities = 19/103 (18%), Positives = 46/103 (44%)
Query: 94 YQNRRTMNSSDRALLNAIREINSMADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIA 153
++ + L+ ++ + L K + A ++ ++ + + GRS ++A
Sbjct: 86 FKLILKALETSVDLITTGDFMSRFCSNLCLPKQVQMAATHIARKAVELDLVPGRSPISVA 145
Query: 154 SACLYIACRQEGVPRTFKEICAVSKISKKEIGRCFKLILKALE 196
+A +Y+A + RT KEI ++ ++ I + ++LI
Sbjct: 146 AAAIYMASQASAEKRTQKEIGDIAGVADVTIRQSYRLIYPRAP 188
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB);
hyperthermophIle, ribosome binding, complex (ribosome
binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei}
SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B*
Length = 200
Score = 212 bits (540), Expect = 7e-69
Identities = 60/196 (30%), Positives = 113/196 (57%), Gaps = 2/196 (1%)
Query: 101 NSSDRALLNAIREINSMADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIA 160
++++R L A+ E++ + ++ L + + + A L+++ ++GRS +++ +AC+Y A
Sbjct: 3 DAAERNLAFALSELDRITAQLKLPRHVEEEAARLYREAVRKGLIRGRSIESVMAACVYAA 62
Query: 161 CRQEGVPRTFKEICAVSKISKKEIGRCFKLILKALETSVDL--ITTGDFMSRFCSNLSLP 218
CR VPRT EI ++++ KKEIGR ++ I + L + + D++++F L L
Sbjct: 63 CRLLKVPRTLDEIADIARVDKKEIGRSYRFIARNLNLTPKKLFVKPTDYVNKFADELGLS 122
Query: 219 NMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTI 278
V++ A I +A + + G+SP + AAA+Y+AS +KR+Q+E+ ++A V EVT+
Sbjct: 123 EKVRRRAIEILDEAYKRGLTSGKSPAGLVAAALYIASLLEGEKRTQREVAEVARVTEVTV 182
Query: 279 RQSYKLMYPHASKLFP 294
R YK + P
Sbjct: 183 RNRYKELVEKLKIKVP 198
Score = 67.7 bits (165), Expect = 1e-13
Identities = 22/88 (25%), Positives = 47/88 (53%)
Query: 114 INSMADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEI 173
+N AD + L++ + RA + + + G+S + +A LYIA EG RT +E+
Sbjct: 112 VNKFADELGLSEKVRRRAIEILDEAYKRGLTSGKSPAGLVAAALYIASLLEGEKRTQREV 171
Query: 174 CAVSKISKKEIGRCFKLILKALETSVDL 201
V+++++ + +K +++ L+ V +
Sbjct: 172 AEVARVTEVTVRNRYKELVEKLKIKVPI 199
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 109 bits (273), Expect = 4e-29
Identities = 23/52 (44%), Positives = 34/52 (65%), Gaps = 3/52 (5%)
Query: 1 MNINKVC--CYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSN 50
+NI C C +P ++E + GD +C+ CGLV+ D+++D SEWRTFSN
Sbjct: 18 LNIVLTCPECKVYPPK-IVERFSEGDVVCALCGLVLSDKLVDTRSEWRTFSN 68
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation;
NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Length = 58
Score = 79.2 bits (195), Expect = 3e-19
Identities = 39/49 (79%), Positives = 42/49 (85%)
Query: 4 NKVCCYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEK 52
+V C HPDA L+EDYRAGD IC ECGLVVGDRVIDVGSEWRTFSN+K
Sbjct: 10 PRVTCPNHPDAILVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNDK 58
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation
factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Length = 50
Score = 69.4 bits (170), Expect = 8e-16
Identities = 18/49 (36%), Positives = 27/49 (55%)
Query: 1 MNINKVCCYEHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFS 49
M + C A LI D G+ +C++CG V+ + +ID+G EWR F
Sbjct: 1 MVNKQKVCPACESAELIYDPERGEIVCAKCGYVIEENIIDMGPEWRAFD 49
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive
transcription elongation factor, P-TEFB; 1.50A {Homo
sapiens} SCOP: a.74.1.1 a.74.1.1
Length = 258
Score = 50.3 bits (120), Expect = 2e-07
Identities = 25/164 (15%), Positives = 59/164 (35%), Gaps = 17/164 (10%)
Query: 110 AIREINSMADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRT 169
R I + R+ L + F + + + K + CL++A + E P+
Sbjct: 44 GARFIFDVGTRLGLHYDTLATGIIYFHRFYMFHSFKQFPRYVTGACCLFLAGKVEETPKK 103
Query: 170 FKEICAVSKI-------------SKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLS 216
K+I ++ K+E+ +++L+ ++ + + F+ ++ L
Sbjct: 104 CKDIIKTARSLLNDVQFGQFGDDPKEEVMVLERILLQTIKFDLQVEHPYQFLLKYAKQLK 163
Query: 217 LPNMVQKAATHIARKAVEL----DIVPGRSPISVAAAAIYMASQ 256
+ +A V + P +A A +Y+A +
Sbjct: 164 GDKNKIQKLVQMAWTFVNDSLCTTLSLQWEPEIIAVAVMYLAGR 207
Score = 26.8 bits (59), Expect = 9.4
Identities = 6/16 (37%), Positives = 8/16 (50%)
Query: 152 IASACLYIACRQEGVP 167
IA A +Y+A R
Sbjct: 197 IAVAVMYLAGRLCKFE 212
>1f5q_B Gamma herpesvirus cyclin; herpesviral cyclin, cyclin dependent
kinase. protein/protein complex, transferase; 2.50A
{Murid herpesvirus 4} SCOP: a.74.1.1 a.74.1.1
Length = 252
Score = 49.0 bits (117), Expect = 5e-07
Identities = 18/143 (12%), Positives = 46/143 (32%), Gaps = 9/143 (6%)
Query: 152 IASACLYIACR-QEGVPRTFKEICAVSK--ISKKEIGRCFKLILKALETSVDLITTGDFM 208
A+ L+IA + + +P ++ + + ++ L L D + D +
Sbjct: 94 TAAVALHIAGKVRAYMPIKATQLAYLCGGATTADKLLTLEVKSLDTLSWVADRCLSTDLI 153
Query: 209 SRFCSNLSLPNMVQKAATHIARKAVELDIVPGR----SPISVAAAAIYMASQASSDKRSQ 264
+ P ++ R + + GR P+ + A +++ D
Sbjct: 154 CYILHIMHAPREDYLNIYNLCRPKIFCALCDGRSAMKRPVLITLACMHLTMNQKYDYYEN 213
Query: 265 --KEIGDIAGVAEVTIRQSYKLM 285
+ + + + Q L+
Sbjct: 214 RIDGVCKSLYITKEELHQCCDLV 236
>2ivx_A Cyclin-T2; transcription regulation, cell division,
phosphorylation, NU protein, cell cycle, transcription;
1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A
3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B*
3lq5_B* 3my1_B* 3tn8_B*
Length = 257
Score = 49.0 bits (116), Expect = 6e-07
Identities = 21/166 (12%), Positives = 51/166 (30%), Gaps = 19/166 (11%)
Query: 110 AIREINSMADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRT 169
A I M R+N+++ ++ A + + + + + I+S L++A + E R
Sbjct: 34 AANLIQEMGQRLNVSQLTINTAIVYMHRFYMHHSFTKFNKNIISSTALFLAAKVEEQARK 93
Query: 170 FKEICAVSKISKKEIGRCFKLILKALETSVDLITTGDFMS----RFCSNLSLP------- 218
+ + V+ + A + + + F + P
Sbjct: 94 LEHVIKVAHACLHPLEPLLDTKCDAYLQQTRELVILETIMLQTLGFEITIEHPHTDVVKC 153
Query: 219 --------NMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQ 256
++ Q + P +A I++A +
Sbjct: 154 TQLVRASKDLAQTSYFMATNSLHLTTFCLQYKPTVIACVCIHLACK 199
Score = 27.4 bits (60), Expect = 5.5
Identities = 5/16 (31%), Positives = 9/16 (56%)
Query: 152 IASACLYIACRQEGVP 167
IA C+++AC+
Sbjct: 189 IACVCIHLACKWSNWE 204
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 49.9 bits (118), Expect = 6e-07
Identities = 54/323 (16%), Positives = 100/323 (30%), Gaps = 91/323 (28%)
Query: 45 WRTFSNEKSGVDPSRVGGPENPLLNGSDLSTMIGPG---RGDASFD---GFGMSKYQNRR 98
W N S PE L L I P R D S + + + RR
Sbjct: 186 WLNLKNCNS---------PETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRR 236
Query: 99 TMNSSD--RALL------NAIREINSMAD---RINLT---KTIVDRANNL-FKQVHDGKN 143
+ S LL NA + N+ + +I LT K + D + + +
Sbjct: 237 LLKSKPYENCLLVLLNVQNA-KAWNAF-NLSCKILLTTRFKQVTDFLSAATTTHISLDHH 294
Query: 144 LKGRSNDAIASACL-YIACRQEGVPRTFKEICAVS--KIS------KKEIGR-------- 186
+ D + S L Y+ CR + +PR E+ + ++S + +
Sbjct: 295 SMTLTPDEVKSLLLKYLDCRPQDLPR---EVLTTNPRRLSIIAESIRDGLATWDNWKHVN 351
Query: 187 CFKLILKALETSVDLITTGDFMSRF--CS----NLSLPNMV-------------QKAATH 227
C KL +E+S++++ ++ F S + +P ++
Sbjct: 352 CDKLT-TIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNK 410
Query: 228 IARKA-VELDIVPGRSPISVAAAAIYMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLM- 285
+ + + VE I +IY+ + + +I Y +
Sbjct: 411 LHKYSLVEKQPKESTISIP----SIYLELKVKLENEYALHR---------SIVDHYNIPK 457
Query: 286 -YPHASKLFPQD---FVFHTPIH 304
+ + P F H H
Sbjct: 458 TFDSDDLIPPYLDQYFYSHIGHH 480
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 48.1 bits (114), Expect = 2e-06
Identities = 53/303 (17%), Positives = 97/303 (32%), Gaps = 96/303 (31%)
Query: 84 ASFDGFGMSKYQNRRTMNSSDRALLNAIRE----------INSMADRI-NLTKTIVDRAN 132
F G+ +S + D+ L + E I+++A ++ T + +
Sbjct: 62 GKFLGY-VSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTK 120
Query: 133 NLFKQVHDGKNLKGRSNDAIASACLYIACRQE-----------GVPRT-FKEICAVSKIS 180
L K + + R D +++ L+ A + G F+E+ + +
Sbjct: 121 ELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTY 180
Query: 181 KKEIGRCFKLILKALETSVD-------LITTG-DFMS------------RFCSN-LSLP- 218
+G K + L + + T G + + S +S P
Sbjct: 181 HVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPL 240
Query: 219 -NMVQKAATHIARKAVELDIVPG--RSPIS---------VAAAAIYMASQASSDKRSQKE 266
++Q A H A L PG RS + V A AI A +D S +
Sbjct: 241 IGVIQLA--HYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAI-----AETD--SWES 291
Query: 267 IGDIAGVAEVTIRQSYKLM----------YPHASKLFP---QDFVFH-----TP---IHE 305
R++ ++ YP+ S L P +D + + +P I
Sbjct: 292 FFVSV-------RKAITVLFFIGVRCYEAYPNTS-LPPSILEDSLENNEGVPSPMLSISN 343
Query: 306 LPQ 308
L Q
Sbjct: 344 LTQ 346
Score = 47.0 bits (111), Expect = 5e-06
Identities = 51/340 (15%), Positives = 104/340 (30%), Gaps = 114/340 (33%)
Query: 46 RTFSNEKSGVDPSRVGGPENPLLNGSDLSTMIGPGRGDAS----FDGFGMS-KY-QNRRT 99
+ + + + L G+A F G G + Y + R
Sbjct: 124 KNYITARIMAKRPFDKKSNSALFRAVG--------EGNAQLVAIFGGQGNTDDYFEELRD 175
Query: 100 MNSSDRALLNAIREINSMADRI-NLTKTIVDRANNLFKQVHDGKN-LKGRS----NDAIA 153
+ + L+ + I A+ + L +T +D A +F Q + L+ S D +
Sbjct: 176 LYQTYHVLVGDL--IKFSAETLSELIRTTLD-AEKVFTQGLNILEWLENPSNTPDKDYLL 232
Query: 154 S-------------ACLYIACRQEGV-PRTFKE-ICAVSKISKKEI----------GRCF 188
S A + + G P + + + S+ + F
Sbjct: 233 SIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESF 292
Query: 189 -KLILKALETSVDLITTGDFMSRFC----SNLSL-PNMVQKAATH-------------IA 229
+ KA+ L G R C N SL P++++ + + +
Sbjct: 293 FVSVRKAITV---LFFIG---VR-CYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLT 345
Query: 230 RKAVELDI------VPGRSPISVA-------------AAAIYMASQASSDKRSQKEIGDI 270
++ V+ + +P + ++ ++Y + R K
Sbjct: 346 QEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLT---LRKAK----- 397
Query: 271 AGVAEVTIRQSYKLMYPHAS-KL-FPQDFV-----FHTPI 303
A + QS ++ P + KL F F+ FH+ +
Sbjct: 398 ---APSGLDQS-RI--PFSERKLKFSNRFLPVASPFHSHL 431
Score = 33.1 bits (75), Expect = 0.15
Identities = 21/126 (16%), Positives = 38/126 (30%), Gaps = 39/126 (30%)
Query: 190 LILK--ALETSVDLITTGDFMS------RFCSNLSLPNMVQKAATHIARKAVELDIVPGR 241
L L +LE + L+ T F +F L P + D P
Sbjct: 9 LTLSHGSLEHVL-LVPTASFFIASQLQEQFNKILPEPT-----------EGFAADDEP-T 55
Query: 242 SPISVAAAAI-YMASQASSDKRSQKEIGDIAGVAEVTIRQSYKLMYPHASKLFPQDFVFH 300
+P + + Y++S ++G V + + + F ++
Sbjct: 56 TPAELVGKFLGYVSSLVE-----PSKVGQFDQVLNLCLTE------------FENCYLEG 98
Query: 301 TPIHEL 306
IH L
Sbjct: 99 NDIHAL 104
Score = 30.4 bits (68), Expect = 0.85
Identities = 61/346 (17%), Positives = 92/346 (26%), Gaps = 134/346 (38%)
Query: 7 CCYE--------HPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTF-SNEKSGVDP 57
Y P + Y G S+ GLV I W +F + + +
Sbjct: 247 AHYVVTAKLLGFTPGE--LRSYLKGATGHSQ-GLVTA-VAIAETDSWESFFVSVRKAITV 302
Query: 58 S-RVG------GPENPLLNGSDLSTMIGPGRGDASFDGFGMSKYQNRRTM----NSSDRA 106
+G P N L S L + G S M N +
Sbjct: 303 LFFIGVRCYEAYP-NTSLPPSILEDSLENNEGVPSP-------------MLSISNLTQEQ 348
Query: 107 LLNAIREINS---MADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIAS--ACLYIAC 161
+ + + + NS ++ ++ L N G N ++ LY
Sbjct: 349 VQDYVNKTNSHLPAGKQVEIS---------LV-------N--GAKNLVVSGPPQSLY--- 387
Query: 162 RQEGVPRTFKEICAV-----SKI--S--KKEIGRCF----------------KLILKALE 196
G+ T ++ A S+I S K + F LI K L
Sbjct: 388 ---GLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLV 444
Query: 197 ------TSVDL------ITTG-DFMSRFCSNLSLPNMV--------------QKAATHIA 229
+ D+ G D R S +V Q ATHI
Sbjct: 445 KNNVSFNAKDIQIPVYDTFDGSDL--RVLSGSISERIVDCIIRLPVKWETTTQFKATHI- 501
Query: 230 RKAVELDIVPGR-SPISVAAAAIYMAS-----QASS-DKRSQKEIG 268
LD PG S + V + A + D + G
Sbjct: 502 -----LDFGPGGASGLGVLTHRNKDGTGVRVIVAGTLDINPDDDYG 542
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P-
TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1
a.74.1.1 PDB: 2w2h_C
Length = 358
Score = 47.5 bits (112), Expect = 2e-06
Identities = 21/166 (12%), Positives = 58/166 (34%), Gaps = 19/166 (11%)
Query: 110 AIREINSMADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRT 169
A + M R+N+++ ++ A + + ++ +++A A L++A + E P+
Sbjct: 41 AANLLQDMGQRLNVSQLTINTAIVYMHRFYMIQSFTRFPGNSVAPAALFLAAKVEEQPKK 100
Query: 170 FKEICAVSKISKK------------------EIGRCFKLILKALETSVDLITTGDFMSRF 211
+ + V+ ++ +IL+ L + + + +
Sbjct: 101 LEHVIKVAHTCLHPQESLPDTRSEAYLQQVQDLVILESIILQTLGFELTIDHPHTHVVKC 160
Query: 212 CSNLSL-PNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQ 256
+ ++ Q + +P VA I++A +
Sbjct: 161 TQLVRASKDLAQTSYFMATNSLHLTTFSLQYTPPVVACVCIHLACK 206
Score = 27.1 bits (59), Expect = 7.1
Identities = 4/16 (25%), Positives = 9/16 (56%)
Query: 152 IASACLYIACRQEGVP 167
+A C+++AC+
Sbjct: 196 VACVCIHLACKWSNWE 211
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat
domains, transcription-cell cycle complex; 3.00A
{Schizosaccharomyces pombe}
Length = 235
Score = 46.6 bits (110), Expect = 3e-06
Identities = 33/181 (18%), Positives = 69/181 (38%), Gaps = 19/181 (10%)
Query: 95 QNRRTMNSSDRALLNAIRE----------INSMADRINLTKTIVDRANNLFKQVHDGKNL 144
Q + S+D L + + DR+ L + ++ A L ++ KN
Sbjct: 6 QLTQLFLSTDLESLEPTCLSKDTIYQWKVVQTFGDRLRLRQRVLATAIVLLRRYMLKKNE 65
Query: 145 -KGRSNDAIASACLYIACRQEGVPRTFKEICAVS--------KISKKEIGRCFKLILKAL 195
KG S +A+ + C+Y++C+ E P + IC + K+S+ I I+ L
Sbjct: 66 EKGFSLEALVATCIYLSCKVEECPVHIRTICNEANDLWSLKVKLSRSNISEIEFEIISVL 125
Query: 196 ETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMAS 255
+ + + + + + + + A I + + P +A AA+ ++
Sbjct: 126 DAFLIVHHPYTSLEQAFHDGIINQKQLEFAWSIVNDSYASSLCLMAHPHQLAYAALLISC 185
Query: 256 Q 256
Sbjct: 186 C 186
Score = 28.5 bits (63), Expect = 2.6
Identities = 8/45 (17%), Positives = 17/45 (37%), Gaps = 1/45 (2%)
Query: 152 IASACLYIACRQEGVPRTFKEICAVSKISKKEIGRCFKLILKALE 196
+A A L I+C + K + + ++ C + I+
Sbjct: 176 LAYAALLISCCNDENTIP-KLLDLIKSTDAFKVILCVQRIISIYY 219
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation,
ATP-BIN cell division, disease mutation, kinase; 3.00A
{Homo sapiens}
Length = 306
Score = 45.9 bits (109), Expect = 7e-06
Identities = 22/110 (20%), Positives = 45/110 (40%), Gaps = 7/110 (6%)
Query: 152 IASACLYIACRQEGV-PRTFKEICAVSK--ISKKEIGRCFKLILKALETSVDLITTGDFM 208
+ + C+ +A + P T +++C + +S +++ L+L L+ + + DF+
Sbjct: 116 LGAVCMLLASKLRETTPLTIEKLCIYTDHAVSPRQLRDWEVLVLGKLKWDLAAVIAHDFL 175
Query: 209 SRFCSNLSLPNMVQKAATHIARKAVELDIVPGR----SPISVAAAAIYMA 254
+ LSLP Q A+ + L P +A +I A
Sbjct: 176 AFILHRLSLPRDRQALVKKHAQTFLALCATDYTFAMYPPSMIATGSIGAA 225
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin,
cell cycle, signaling protein; 2.90A {Human herpesvirus
8} SCOP: a.74.1.1 a.74.1.1
Length = 257
Score = 45.1 bits (107), Expect = 9e-06
Identities = 22/112 (19%), Positives = 41/112 (36%), Gaps = 7/112 (6%)
Query: 152 IASACLYIACRQEGV-PRTFKEICAVS--KISKKEIGRCFKLILKALETSVDLITTGDFM 208
SACL +A + + P + +C + S++E+ K +L+ L + + D
Sbjct: 96 TGSACLLVASKLRSLTPISTSSLCYAAADSFSRQELIDQEKELLEKLAWRTEAVLATDVT 155
Query: 209 SRFCSNLSLPNMVQKAATHIARKAVEL---DIVPGRSPIS-VAAAAIYMASQ 256
S L + H + D + G P S ++AA +
Sbjct: 156 SFLLLKLVGGSQHLDFWHHEVNTLITKALVDPLTGSLPASIISAAGCALLVP 207
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase,
chromosomal rearrangement, ATP-binding, transferase,
polymorphism, cell division; 2.30A {Homo sapiens} PDB:
2w99_A 2w9f_A 2w9z_A
Length = 271
Score = 44.7 bits (106), Expect = 1e-05
Identities = 23/110 (20%), Positives = 52/110 (47%), Gaps = 7/110 (6%)
Query: 152 IASACLYIACR-QEGVPRTFKEICAVSK--ISKKEIGRCFKLILKALETSVDLITTGDFM 208
+ + C+++A + +E +P T +++C + I +E+ + L++ L+ ++ +T DF+
Sbjct: 102 LGATCMFVASKMKETIPLTAEKLCIYTDNSIRPEELLQMELLLVNKLKWNLAAMTPHDFI 161
Query: 209 SRFCSNLSLPNMVQKAATHIARKAVELDIVPGR----SPISVAAAAIYMA 254
F S + ++ A+ V L + P VAA ++ A
Sbjct: 162 EHFLSKMPEAEENKQIIRKHAQTFVALCATDVKFISNPPSMVAAGSVVAA 211
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between
N-terminal and C-TERM domain of kinase, cell
cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus
saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A*
1xo2_A* 1bu2_A
Length = 254
Score = 44.3 bits (105), Expect = 2e-05
Identities = 22/110 (20%), Positives = 44/110 (40%), Gaps = 7/110 (6%)
Query: 152 IASACLYIACR-QEGVPRTFKEICAVS--KISKKEIGRCFKLILKALETSVDLITTGDFM 208
I +AC+ I + + P T ++ +S + E+ K IL+AL+ + + DF+
Sbjct: 97 IGAACVLIGSKIRTVKPMTVSKLTYLSCDCFTNLELINQEKDILEALKWDTEAVLATDFL 156
Query: 209 SRFCSNLSLPNMVQKAATHIARKAVELDIVPGR----SPISVAAAAIYMA 254
C+ L +P + A + ++ SP + A +
Sbjct: 157 IPLCNALKIPEDLWPQLYEAASTTICKALIQPNIALLSPGLICAGGLLTT 206
>2r7g_A PP110, retinoblastoma-associated protein, P105-RB, RB;
retinoblastoma protein, E2F displacement, transcription
repressor; 1.67A {Homo sapiens} SCOP: a.74.1.3 a.74.1.3
PDB: 1n4m_A 3pom_A 1gh6_B 1gux_A 1o9k_A 1ad6_A 1gux_B
1o9k_B
Length = 347
Score = 43.9 bits (103), Expect = 3e-05
Identities = 25/153 (16%), Positives = 52/153 (33%), Gaps = 15/153 (9%)
Query: 81 RGDASFDGFGMSKYQNRRTMNSSD---RALLNAIREINSMADRINLTKT-IVDRANNLFK 136
FD SK + ++ + S + A +N++ +R+ + LF+
Sbjct: 186 SDSPLFDLIKQSKDREGKSTSLSLFYKKVYRLAYLRLNTLCERLLSEHPELEHIIWTLFQ 245
Query: 137 QV--HDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGRCFKLILKA 194
++ + ++ R D I +Y C+ + + FK I K + FK +L
Sbjct: 246 HTLQNEYELMRDRHLDQIMMCSMYGICKVKNIDLKFKIIVTAYKDLPHAVQETFKRVLIK 305
Query: 195 LETSVDLIT---------TGDFMSRFCSNLSLP 218
E +I + ++ S
Sbjct: 306 EEEYDSIIVFYNSVFMQRLKTNILQYASTRPPT 338
>4ell_A Retinoblastoma-associated protein; cyclin fold, tumor suppressor,
cell cycle; 1.98A {Homo sapiens}
Length = 411
Score = 42.4 bits (99), Expect = 1e-04
Identities = 19/97 (19%), Positives = 38/97 (39%), Gaps = 3/97 (3%)
Query: 110 AIREINSMADRINLTKT-IVDRANNLFKQV--HDGKNLKGRSNDAIASACLYIACRQEGV 166
A +N++ +R+ + LF+ ++ + ++ R D I +Y C+ + +
Sbjct: 282 AYLRLNTLCERLLSEHPELEHIIWTLFQHTLQNEYELMRDRHLDQIMMCSMYGICKVKNI 341
Query: 167 PRTFKEICAVSKISKKEIGRCFKLILKALETSVDLIT 203
FK I K + FK +L E +I
Sbjct: 342 DLKFKIIVTAYKDLPHAVQETFKRVLIKEEEYDSIIV 378
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division),
ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear
protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP:
a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B*
1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B*
2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B*
2x1n_B* 1vyw_B* ...
Length = 260
Score = 41.5 bits (98), Expect = 1e-04
Identities = 24/111 (21%), Positives = 47/111 (42%), Gaps = 11/111 (9%)
Query: 152 IASACLYIACRQEGV-PRTFKEICAVSK--ISKKEIGRCFKLILKALETSVDLITTGDFM 208
+ +A + +A + E + P E ++ +KK++ R L+LK L + T F+
Sbjct: 84 VGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRMEHLVLKVLTFDLAAPTVNQFL 143
Query: 209 SRFCSNLSLPNMVQKAATHIARKAVEL-----DIVPGRSPISVAAAAIYMA 254
+++ + N + +A EL D P +A AA ++A
Sbjct: 144 TQYFLHQQPANCKVE---SLAMFLGELSLIDADPYLKYLPSVIAGAAFHLA 191
>4elj_A Retinoblastoma-associated protein; cyclin fold, tumor suppressor
protein, phosphorylation, cell; HET: TPO; 2.70A {Homo
sapiens}
Length = 656
Score = 42.0 bits (98), Expect = 2e-04
Identities = 25/155 (16%), Positives = 50/155 (32%), Gaps = 17/155 (10%)
Query: 81 RGDASFDGFGMSKYQNRRTMNSSDRALLN-----AIREINSMADRINLTKT-IVDRANNL 134
FD SK + ++S A +N++ +R+ + L
Sbjct: 493 SDSPLFDLIKQSKDREGPLKSTSLSLFYKKVYRLAYLRLNTLCERLLSEHPELEHIIWTL 552
Query: 135 FKQV--HDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGRCFKLIL 192
F+ ++ + ++ R D I +Y C+ + + FK I K + FK +L
Sbjct: 553 FQHTLQNEYELMRDRHLDQIMMCSMYGICKVKNIDLKFKIIVTAYKDLPHAVQETFKRVL 612
Query: 193 KALETSVDLIT---------TGDFMSRFCSNLSLP 218
E +I + ++ S
Sbjct: 613 IKEEEYDSIIVFYNSVFMQRLKTNILQYASTRPPT 647
Score = 34.7 bits (79), Expect = 0.042
Identities = 11/69 (15%), Positives = 25/69 (36%), Gaps = 4/69 (5%)
Query: 119 DRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIAS---AC-LYIACRQEGVPRTFKEIC 174
++ + + +RA +++V + G C A + + TF E+
Sbjct: 13 QKLKIPDHVRERAWLTWEKVSSVDGVLGGYIQKKKELWGICIFIAAVDLDEMSFTFTELQ 72
Query: 175 AVSKISKKE 183
+IS +
Sbjct: 73 KNIEISVHK 81
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B*
Length = 269
Score = 40.4 bits (95), Expect = 4e-04
Identities = 22/110 (20%), Positives = 42/110 (38%), Gaps = 11/110 (10%)
Query: 152 IASACLYIACR-QEGVPRTFKEICAVS--KISKKEIGRCFKLILKALETSVDLITTGDFM 208
+ ++IA + +E P + V+ +K +I + IL+AL + F+
Sbjct: 83 VGVTAMFIASKYEEMYPPEIGDFAFVTDNTYTKHQIRQMEMKILRALNFGLGRPLPLHFL 142
Query: 209 SRFCSNLSLPNMVQKAATHIARKAVELDIVPGR----SPISVAAAAIYMA 254
R V +A+ +EL ++ P +AA A +A
Sbjct: 143 RRASKI----GEVDVEQHTLAKYLMELTMLDYDMVHFPPSQIAAGAFSLA 188
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET:
TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Length = 283
Score = 38.6 bits (90), Expect = 0.002
Identities = 22/118 (18%), Positives = 47/118 (39%), Gaps = 14/118 (11%)
Query: 152 IASACLYIACRQEGV-PRTFKEICAVSK--ISKKEIGRCFKLILKALETSVDLITTGDFM 208
I + L+IA + E + P + V+ S EI +I+KAL+ + +T ++
Sbjct: 96 IGISSLFIAAKLEEIYPPKLHQFAYVTDGACSGDEILTMELMIMKALKWRLSPLTIVSWL 155
Query: 209 SRFC-------SNLSLPNMVQKAATHIARKAVELDIVPGR----SPISVAAAAIYMAS 255
+ + + L + + ++L ++ +AA+A+Y S
Sbjct: 156 NVYMQVAYLNDLHEVLLPQYPQQIFIQIAELLDLCVLDVDCLEFPYGILAASALYHFS 213
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET:
BAX; 2.20A {Homo sapiens}
Length = 285
Score = 38.5 bits (89), Expect = 0.002
Identities = 24/172 (13%), Positives = 58/172 (33%), Gaps = 17/172 (9%)
Query: 110 AIREINSMADRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRT 169
I ++ + + L + ++ A FK+ + +LK +A C+++A + E
Sbjct: 46 FTNVIQALGEHLKLRQQVIATATVYFKRFYARYSLKSIDPVLMAPTCVFLASKVEEFGVV 105
Query: 170 FKEICAVSKIS-----------------KKEIGRCFKLILKALETSVDLITTGDFMSRFC 212
+ S I C +L+ ++ + + + ++
Sbjct: 106 SNTRLIAAATSVLKTRFSYAFPKEFPYRMNHILECEFYLLELMDCCLIVYHPYRPLLQYV 165
Query: 213 SNLSLPNMVQKAATHIARKAVELDIVPGRSPISVAAAAIYMASQASSDKRSQ 264
++ +M+ A I D+ P +A A +++A Q
Sbjct: 166 QDMGQEDMLLPLAWRIVNDTYRTDLCLLYPPFMIALACLHVACVVQQKDARQ 217
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo
sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A
Length = 323
Score = 38.5 bits (89), Expect = 0.002
Identities = 21/151 (13%), Positives = 51/151 (33%), Gaps = 14/151 (9%)
Query: 120 RINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKI 179
+ + +++V A FK+ + ++ I C ++AC+ + + + +
Sbjct: 72 KPAMPRSVVGTACMYFKRFYLNNSVMEYHPRIIMLTCAFLACKVDEFNVSSPQFVGNLRE 131
Query: 180 SKKEIGRCFKLILKA----LET-----SVD-----LITTGDFMSRFCSNLSLPNMVQKAA 225
S + + IL+ ++ V + L P +++K A
Sbjct: 132 SPLGQEKALEQILEYELLLIQQLNFHLIVHNPYRPFEGFLIDLKTRYPILENPEILRKTA 191
Query: 226 THIARKAVELDIVPGRSPISVAAAAIYMASQ 256
+ D +P +A AI ++
Sbjct: 192 DDFLNRIALTDAYLLYTPSQIALTAILSSAS 222
>2qdj_A Retinoblastoma-associated protein; cyclin fold, cyclin wedge,
antitumor protein; 2.00A {Homo sapiens}
Length = 304
Score = 32.4 bits (73), Expect = 0.13
Identities = 13/79 (16%), Positives = 30/79 (37%), Gaps = 7/79 (8%)
Query: 119 DRINLTKTIVDRANNLFKQVHDGKNLKGRSNDAIAS---AC-LYIACRQEGVPRTFKEIC 174
++ + + +RA +++V + G C A + + TF E+
Sbjct: 11 QKLKIPDHVRERAWLTWEKVSSVDGVLGGYIQKKKELWGICIFIAAVDLDEMSFTFTELQ 70
Query: 175 AVSKISKKEIGRCFKLILK 193
+IS + + F L+ +
Sbjct: 71 KNIEIS---VHKFFNLLKE 86
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.8 bits (63), Expect = 1.3
Identities = 10/54 (18%), Positives = 16/54 (29%), Gaps = 25/54 (46%)
Query: 181 KKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLSLPNMVQKAATHIARKAVE 234
K+ + K L+ S+ L S P + KA +E
Sbjct: 19 KQAL--------KKLQASLKLYADD----------SAPALAIKA-------TME 47
>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein
structure initiative, northeast structural genomics
consortium, NESG; 2.90A {Escherichia coli} SCOP:
c.66.1.21
Length = 256
Score = 29.4 bits (66), Expect = 1.5
Identities = 8/47 (17%), Positives = 16/47 (34%), Gaps = 2/47 (4%)
Query: 1 MNINKV-CCYEHPDAPLIEDYRA-GDQICSECGLVVGDRVIDVGSEW 45
M+I ++ E + + G R++D+GS
Sbjct: 1 MDIPRIFTISESEHRIHNPFTEEKYATLGRVLRMKPGTRILDLGSGS 47
>2rc5_A Ferredoxin-NADP reductase; FAD, oxidoreductase; HET: FAD; 2.43A
{Leptospira interrogans} PDB: 2rc6_A*
Length = 314
Score = 29.4 bits (66), Expect = 1.6
Identities = 13/67 (19%), Positives = 22/67 (32%), Gaps = 6/67 (8%)
Query: 47 TFSNEKSGVDPSRVGGPENP--LLNGSDLST---MIGPGRGDASFDGFGMSKYQNRRTMN 101
+ + D + GP LL +D S + G G A F G + + +
Sbjct: 136 NYMCDLKPGDEVTMTGPSGKKFLLPNTDFSGDIMFLATGTGIAPFIGM-SEELLEHKLIK 194
Query: 102 SSDRALL 108
+ L
Sbjct: 195 FTGNITL 201
>3lo8_A Ferredoxin--NADP reductase; electron transport, oxidoreductase,
FAD, flavoprotein; HET: FAD; 1.05A {Zea mays} PDB:
3lvb_A* 1jb9_A*
Length = 311
Score = 28.9 bits (65), Expect = 2.1
Identities = 14/48 (29%), Positives = 18/48 (37%), Gaps = 5/48 (10%)
Query: 47 TFSNEKSGVDPSRVGGPENP--LLNGSDLST---MIGPGRGDASFDGF 89
F D ++ GP LL D + MI G G A F G+
Sbjct: 131 NFLCNSKPGDKIQLTGPSGKIMLLPEEDPNATHIMIATGTGVAPFRGY 178
>3h4c_A Transcription factor TFIIB-like; cyclin, transcription factor TFIIB
repeat; 2.30A {Trypanosoma brucei brucei}
Length = 260
Score = 28.3 bits (62), Expect = 3.1
Identities = 17/71 (23%), Positives = 32/71 (45%), Gaps = 6/71 (8%)
Query: 106 ALLNAIREINSMADRINLTKTIVDRANNLFKQVHDGKNLKGR---SNDAIASACLYIACR 162
+LN +R + + L + ++DR L + G+ +G+ +A+ACL IA
Sbjct: 14 TMLNCMR---GLHKKAVLPEPVLDRGIELARAFVGGRRARGQRVERQPDVAAACLMIAAE 70
Query: 163 QEGVPRTFKEI 173
+ P E+
Sbjct: 71 EAQQPLPLAEV 81
>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A
{Lechevalieria aerocolonigenes}
Length = 273
Score = 27.4 bits (61), Expect = 6.4
Identities = 10/44 (22%), Positives = 16/44 (36%), Gaps = 7/44 (15%)
Query: 7 CCYEHPDAPLIEDYRAG-----DQICSECGLVVGDRVIDVGSEW 45
+E A D++ + + GDRV+DVG
Sbjct: 31 GYWEDAGAD--VSVDDATDRLTDEMIALLDVRSGDRVLDVGCGI 72
>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A
{Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A*
3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*
Length = 266
Score = 27.1 bits (60), Expect = 7.1
Identities = 8/26 (30%), Positives = 13/26 (50%)
Query: 20 YRAGDQICSECGLVVGDRVIDVGSEW 45
A +I S+ L +V+D+GS
Sbjct: 41 LEATKKILSDIELNENSKVLDIGSGL 66
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.134 0.392
Gapped
Lambda K H
0.267 0.0762 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,675,092
Number of extensions: 283149
Number of successful extensions: 911
Number of sequences better than 10.0: 1
Number of HSP's gapped: 888
Number of HSP's successfully gapped: 64
Length of query: 309
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 216
Effective length of database: 4,105,140
Effective search space: 886710240
Effective search space used: 886710240
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (25.7 bits)