BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6536
(67 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2V5R|A Chain A, Structural Basis For Dscam Isoform Specificity
pdb|2V5R|B Chain B, Structural Basis For Dscam Isoform Specificity
Length = 391
Score = 33.5 bits (75), Expect = 0.030, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 1 MTSPAYIKTNPPPKVTLDIGATFVITCETVGVPTPLVSW 39
+T+P K +PP + T+D G V TC+ G P VSW
Sbjct: 307 VTAPLSAKIDPPTQ-TVDFGRPAVFTCQYTGNPIKTVSW 344
>pdb|1IJ9|A Chain A, Highly Hydrated Human Vcam-1 Fragment
Length = 196
Score = 33.1 bits (74), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Query: 7 IKTNPPPKVTLDIGATFVITCETVGVPTPLVSWRLNWNHIPAKCTTTSEDGVGTLT 62
I+T P + IG + +TC T G +P SWR + P T+E TLT
Sbjct: 3 IETTPESRYLAQIGDSVSLTCSTTGCESPFFSWRTQIDS-PLNGKVTNEGTTSTLT 57
>pdb|2V5S|A Chain A, Structural Basis For Dscam Isoform Specificity
pdb|2V5S|B Chain B, Structural Basis For Dscam Isoform Specificity
Length = 394
Score = 33.1 bits (74), Expect = 0.036, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 1 MTSPAYIKTNPPPKVTLDIGATFVITCETVGVPTPLVSW 39
+T+P K +PP + T+D G V TC+ G P VSW
Sbjct: 310 VTAPLSAKIDPPTQ-TVDFGRPAVFTCQYTGNPIKTVSW 347
>pdb|1VSC|A Chain A, Vcam-1
pdb|1VSC|B Chain B, Vcam-1
Length = 196
Score = 33.1 bits (74), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Query: 7 IKTNPPPKVTLDIGATFVITCETVGVPTPLVSWRLNWNHIPAKCTTTSEDGVGTLT 62
I+T P + IG + +TC T G +P SWR + P T+E TLT
Sbjct: 3 IETTPESRYLAQIGDSVSLTCSTTGCESPFFSWRTQIDS-PLNGKVTNEGTTSTLT 57
>pdb|1VCA|A Chain A, Crystal Structure Of An Integrin-Binding Fragment Of
Vascular Cell Adhesion Molecule-1 At 1.8 Angstroms
Resolution
pdb|1VCA|B Chain B, Crystal Structure Of An Integrin-Binding Fragment Of
Vascular Cell Adhesion Molecule-1 At 1.8 Angstroms
Resolution
Length = 202
Score = 33.1 bits (74), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Query: 7 IKTNPPPKVTLDIGATFVITCETVGVPTPLVSWRLNWNHIPAKCTTTSEDGVGTLT 62
I+T P + IG + +TC T G +P SWR + P T+E TLT
Sbjct: 3 IETTPESRYLAQIGDSVSLTCSTTGCESPFFSWRTQIDS-PLNGKVTNEGTTSTLT 57
>pdb|2V5M|A Chain A, Structural Basis For Dscam Isoform Specificity
Length = 388
Score = 33.1 bits (74), Expect = 0.041, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 1 MTSPAYIKTNPPPKVTLDIGATFVITCETVGVPTPLVSW 39
+T+P K +PP + T+D G V TC+ G P VSW
Sbjct: 304 VTAPLSAKIDPPTQ-TVDFGRPAVFTCQYTGNPIKTVSW 341
>pdb|2YR3|A Chain A, Solution Structure Of The Fourth Ig-Like Domain From
Myosin Light Chain Kinase, Smooth Muscle
Length = 99
Score = 30.4 bits (67), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Query: 20 GATFVITCETVGVPTPLVSWRLNWNHIPAKCTTTSEDGVGTLTCPD 65
G FV+ C G P P ++W LN I +T E GV L D
Sbjct: 26 GQDFVLQCSVRGTPVPRITWLLNGQPIQYA-RSTCEAGVAELHIQD 70
>pdb|3DMK|A Chain A, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
pdb|3DMK|B Chain B, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
pdb|3DMK|C Chain C, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
Length = 816
Score = 30.0 bits (66), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 1 MTSPAYIKTNPPPKVTLDIGATFVITCETVGVPTPLVSW 39
+T+P K +PP + T+D G V TC+ G P VSW
Sbjct: 340 VTAPLSAKIDPPTQ-TVDFGRPAVFTCQYTGNPIKTVSW 377
Score = 25.8 bits (55), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 16 TLDIGATFVITCETVGVPTPLVSWRLNWNHI 46
T++ G + + C G PTP +SW L+ I
Sbjct: 440 TMEPGPSVFLKCVAGGNPTPEISWELDGKKI 470
>pdb|1E07|A Chain A, Model Of Human Carcinoembryonic Antigen By Homology
Modelling And Curve-Fitting To Experimental Solution
Scattering Data
Length = 642
Score = 30.0 bits (66), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 12 PPKVTLDIGATFVITCETVGVPTPLVSWRLN 42
PP + GA ++C + P+P SWR+N
Sbjct: 566 PPDSSYLSGANLNLSCHSASNPSPQYSWRIN 596
>pdb|2YD1|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of
Drosophila Receptor Protein Tyrosine Phosphatase Dlar
Length = 212
Score = 29.6 bits (65), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 21/38 (55%)
Query: 9 TNPPPKVTLDIGATFVITCETVGVPTPLVSWRLNWNHI 46
T P +++G T ++TC+ +G PTP + W N +
Sbjct: 114 TQGPGTRVIEVGHTVLMTCKAIGNPTPNIYWIKNQTKV 151
>pdb|3PXJ|A Chain A, Tandem Ig Repeats Of Dlar
pdb|3PXJ|B Chain B, Tandem Ig Repeats Of Dlar
pdb|3PXJ|C Chain C, Tandem Ig Repeats Of Dlar
pdb|3PXJ|D Chain D, Tandem Ig Repeats Of Dlar
Length = 210
Score = 29.6 bits (65), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 21/38 (55%)
Query: 9 TNPPPKVTLDIGATFVITCETVGVPTPLVSWRLNWNHI 46
T P +++G T ++TC+ +G PTP + W N +
Sbjct: 116 TQGPGTRVIEVGHTVLMTCKAIGNPTPNIYWIKNQTKV 153
>pdb|3LCY|A Chain A, Titin Ig Tandem Domains A164-A165
pdb|3LCY|B Chain B, Titin Ig Tandem Domains A164-A165
pdb|3LCY|C Chain C, Titin Ig Tandem Domains A164-A165
pdb|3LCY|D Chain D, Titin Ig Tandem Domains A164-A165
Length = 197
Score = 28.9 bits (63), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Query: 15 VTLDIGATFVITCETVGVPTPLVSW-RLNWNHIPAKCTTTSEDG 57
VT +G ++C+ VG P P + W R I ++ S DG
Sbjct: 17 VTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDG 60
>pdb|2WP3|T Chain T, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex
pdb|2WWK|T Chain T, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
F17r Mutant Complex
pdb|2WWM|D Chain D, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex In Space Group P1
pdb|2WWM|T Chain T, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex In Space Group P1
pdb|2Y9R|T Chain T, Crystal Structure Of The M10 Domain Of Titin
Length = 102
Score = 28.5 bits (62), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 25/60 (41%), Gaps = 4/60 (6%)
Query: 12 PPKVTLDIGATFVITCETVGVPTPLVSWRLNWNHI----PAKCTTTSEDGVGTLTCPDIQ 67
P +++D G + C G PTP V+W I + + D + TL D+Q
Sbjct: 14 PSDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTDDLTTLIIMDVQ 73
>pdb|3KNB|A Chain A, Crystal Structure Of The Titin C-Terminus In Complex
With Obscurin- Like 1
pdb|3Q5O|A Chain A, Crystal Structure Of Human Titin Domain M10
pdb|3Q5O|B Chain B, Crystal Structure Of Human Titin Domain M10
Length = 100
Score = 28.5 bits (62), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 25/60 (41%), Gaps = 4/60 (6%)
Query: 12 PPKVTLDIGATFVITCETVGVPTPLVSWRLNWNHI----PAKCTTTSEDGVGTLTCPDIQ 67
P +++D G + C G PTP V+W I + + D + TL D+Q
Sbjct: 12 PSDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTDDLTTLIIMDVQ 71
>pdb|3LAF|A Chain A, Structure Of Dcc, A Netrin-1 Receptor
Length = 403
Score = 28.1 bits (61), Expect = 1.1, Method: Composition-based stats.
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 15 VTLDIGATFVITCETVGVPTPLVSWRLN 42
+T +G T ++ CE +G P P + W+ N
Sbjct: 131 ITAFMGDTVLLKCEVIGDPMPTIHWQKN 158
>pdb|2Y25|A Chain A, Crystal Structure Of The Myomesin Domains My11-My13
pdb|2Y25|B Chain B, Crystal Structure Of The Myomesin Domains My11-My13
pdb|2Y25|C Chain C, Crystal Structure Of The Myomesin Domains My11-My13
pdb|2Y25|D Chain D, Crystal Structure Of The Myomesin Domains My11-My13
Length = 317
Score = 28.1 bits (61), Expect = 1.2, Method: Composition-based stats.
Identities = 13/31 (41%), Positives = 15/31 (48%)
Query: 12 PPKVTLDIGATFVITCETVGVPTPLVSWRLN 42
P VT+ G +TC G P P VSW N
Sbjct: 229 PDVVTIQEGKALNLTCNVWGDPPPEVSWLKN 259
>pdb|2DM3|A Chain A, Solution Structure Of The Second Ig Domain Of Human
Palladin
Length = 110
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 5/61 (8%)
Query: 4 PAYIKTNPPPKVTLDIGATFVITCETVGVPTPLVSWRLNWNHI---PAKCTTTSEDGVGT 60
P +++ P +T+ G + C+ G+PTP +SW+L+ + A E+GV +
Sbjct: 10 PHFLQA--PGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVRENGVHS 67
Query: 61 L 61
L
Sbjct: 68 L 68
>pdb|2R15|A Chain A, Crystal Structure Of The Myomesin Domains 12 And 13
pdb|2R15|B Chain B, Crystal Structure Of The Myomesin Domains 12 And 13
Length = 212
Score = 27.7 bits (60), Expect = 1.7, Method: Composition-based stats.
Identities = 13/31 (41%), Positives = 15/31 (48%)
Query: 12 PPKVTLDIGATFVITCETVGVPTPLVSWRLN 42
P VT+ G +TC G P P VSW N
Sbjct: 124 PDVVTIQEGKALNLTCNVWGDPPPEVSWLKN 154
>pdb|2IEP|A Chain A, Crystal Structure Of Immunoglobulin-Like Domains 1 And 2
Of The Receptor Tyrosine Kinase Musk
pdb|2IEP|B Chain B, Crystal Structure Of Immunoglobulin-Like Domains 1 And 2
Of The Receptor Tyrosine Kinase Musk
Length = 192
Score = 27.3 bits (59), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 9 TNPPPKVTLDIGATFVITCETVGVPTPLVSW 39
T PP V + G V+ C T+G P P VSW
Sbjct: 104 TRPPINVKIIEGLKAVLPCTTMGNPKPSVSW 134
>pdb|2KDG|A Chain A, Solution Structure Of The 1st Ig Domain Of Myotilin
Length = 100
Score = 27.3 bits (59), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 5/64 (7%)
Query: 1 MTSPAYIKTNPPPKVTLDIGATFVITCETVGVPTPLVSWRLNWNHIPA---KCTTTSEDG 57
M P +I+ P +++D G + + G+P P VSW LN + + SE G
Sbjct: 3 MGPPRFIQV--PENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEKG 60
Query: 58 VGTL 61
+ +L
Sbjct: 61 LHSL 64
>pdb|2EDJ|A Chain A, Solution Structure Of The Fifth Ig-Like Domain From
Human Roundabout Homolog 2
Length = 100
Score = 27.3 bits (59), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 14/56 (25%), Positives = 25/56 (44%)
Query: 12 PPKVTLDIGATFVITCETVGVPTPLVSWRLNWNHIPAKCTTTSEDGVGTLTCPDIQ 67
P TL + T ++ C+ G P P++SW P + + GTL +++
Sbjct: 15 PANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGRDPRATIQEQGTLQIKNLR 70
>pdb|2EO9|A Chain A, Solution Structure Of The Fifth Ig-Like Domain From
Human Roundabout Homo1
Length = 118
Score = 26.9 bits (58), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 2 TSPAYIKTNPPPKVTLDIGATFVITCETVGVPTPLVSWRLN 42
+ P I+ P + T+ + TFV++C G P P + WR +
Sbjct: 6 SGPPVIRQGPVNQ-TVAVDGTFVLSCVATGSPVPTILWRKD 45
>pdb|4FRW|A Chain A, Crystal Structure Of Human Nectin-4 Extracellular Fragment
D1-D2
pdb|4FRW|B Chain B, Crystal Structure Of Human Nectin-4 Extracellular Fragment
D1-D2
pdb|4FRW|C Chain C, Crystal Structure Of Human Nectin-4 Extracellular Fragment
D1-D2
pdb|4FRW|D Chain D, Crystal Structure Of Human Nectin-4 Extracellular Fragment
D1-D2
pdb|4FRW|E Chain E, Crystal Structure Of Human Nectin-4 Extracellular Fragment
D1-D2
pdb|4FRW|F Chain F, Crystal Structure Of Human Nectin-4 Extracellular Fragment
D1-D2
Length = 218
Score = 26.6 bits (57), Expect = 3.8, Method: Composition-based stats.
Identities = 12/36 (33%), Positives = 15/36 (41%)
Query: 4 PAYIKTNPPPKVTLDIGATFVITCETVGVPTPLVSW 39
P NP P + G T +C G P P V+W
Sbjct: 117 PPLPSLNPGPALEEGQGLTLAASCTAEGSPAPSVTW 152
>pdb|2BX2|L Chain L, Catalytic Domain Of E. Coli Rnase E
pdb|2C0B|L Chain L, Catalytic Domain Of E. Coli Rnase E In Complex With 13-Mer
Rna
pdb|2C4R|L Chain L, Catalytic Domain Of E. Coli Rnase E
Length = 517
Score = 26.6 bits (57), Expect = 3.9, Method: Composition-based stats.
Identities = 12/36 (33%), Positives = 17/36 (47%)
Query: 32 VPTPLVSWRLNWNHIPAKCTTTSEDGVGTLTCPDIQ 67
VP P+ S+ LN T +DGV + P+ Q
Sbjct: 450 VPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQ 485
>pdb|1QZ1|A Chain A, Crystal Structure Of The Ig 1-2-3 Fragment Of Ncam
Length = 291
Score = 26.6 bits (57), Expect = 3.9, Method: Composition-based stats.
Identities = 12/39 (30%), Positives = 18/39 (46%), Gaps = 9/39 (23%)
Query: 10 NPPPKV---------TLDIGATFVITCETVGVPTPLVSW 39
N PP V T ++G + + C+ G P P +SW
Sbjct: 192 NVPPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSW 230
>pdb|2VRT|A Chain A, Crystal Structure Of E. Coli Rnase E Possessing M1 Rna
Fragments - Catalytic Domain
pdb|2VRT|B Chain B, Crystal Structure Of E. Coli Rnase E Possessing M1 Rna
Fragments - Catalytic Domain
pdb|2VRT|C Chain C, Crystal Structure Of E. Coli Rnase E Possessing M1 Rna
Fragments - Catalytic Domain
pdb|2VRT|D Chain D, Crystal Structure Of E. Coli Rnase E Possessing M1 Rna
Fragments - Catalytic Domain
Length = 509
Score = 26.6 bits (57), Expect = 3.9, Method: Composition-based stats.
Identities = 12/36 (33%), Positives = 17/36 (47%)
Query: 32 VPTPLVSWRLNWNHIPAKCTTTSEDGVGTLTCPDIQ 67
VP P+ S+ LN T +DGV + P+ Q
Sbjct: 443 VPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQ 478
>pdb|2VMK|A Chain A, Crystal Structure Of E. Coli Rnase E Apoprotein -
Catalytic Domain
pdb|2VMK|B Chain B, Crystal Structure Of E. Coli Rnase E Apoprotein -
Catalytic Domain
pdb|2VMK|C Chain C, Crystal Structure Of E. Coli Rnase E Apoprotein -
Catalytic Domain
pdb|2VMK|D Chain D, Crystal Structure Of E. Coli Rnase E Apoprotein -
Catalytic Domain
Length = 515
Score = 26.6 bits (57), Expect = 3.9, Method: Composition-based stats.
Identities = 12/36 (33%), Positives = 17/36 (47%)
Query: 32 VPTPLVSWRLNWNHIPAKCTTTSEDGVGTLTCPDIQ 67
VP P+ S+ LN T +DGV + P+ Q
Sbjct: 443 VPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQ 478
>pdb|1BIH|A Chain A, Crystal Structure Of The Insect Immune Protein Hemolin: A
New Domain Arrangement With Implications For Homophilic
Adhesion
pdb|1BIH|B Chain B, Crystal Structure Of The Insect Immune Protein Hemolin: A
New Domain Arrangement With Implications For Homophilic
Adhesion
Length = 395
Score = 26.2 bits (56), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 14/58 (24%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Query: 1 MTSPAYIKTNPPPKVTLDIGATFVITCETVGVPTPLVSWRLNWNHIPAKCTTTSEDGV 58
+++P Y + P + + G I C+ G+P P V W N + T ++ G+
Sbjct: 306 VSAPKY-EQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPLSGGRATVTDSGL 362
>pdb|3P3Y|A Chain A, Crystal Structure Of Neurofascin Homophilic Adhesion
Complex In Space Group P6522
pdb|3P40|A Chain A, Crystal Structure Of Neurofascin Adhesion Complex In Space
Group P3221
Length = 404
Score = 26.2 bits (56), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 14/56 (25%), Positives = 22/56 (39%), Gaps = 12/56 (21%)
Query: 20 GATFVITCETVGVPTPLVSWRLNWNHIPA------------KCTTTSEDGVGTLTC 63
G ++ C GVPTP ++W +P+ + T SE+ G C
Sbjct: 237 GMDLLLECIASGVPTPDIAWYKKGGDLPSDKAKFENFNKALRITNVSEEDSGEYFC 292
>pdb|3QQN|A Chain A, The Retinal Specific Cd147 Ig0 Domain: From Molecular
Structure To Biological Activity
pdb|3QQN|B Chain B, The Retinal Specific Cd147 Ig0 Domain: From Molecular
Structure To Biological Activity
Length = 137
Score = 25.4 bits (54), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 19 IGATFVITCETVGVPTPLVSW 39
+G + + CE VG P P + W
Sbjct: 35 VGGSVELHCEAVGSPVPEIQW 55
>pdb|3QR2|A Chain A, Wild Type Cd147 Ig0 Domain
pdb|3QR2|B Chain B, Wild Type Cd147 Ig0 Domain
Length = 137
Score = 25.4 bits (54), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 19 IGATFVITCETVGVPTPLVSW 39
+G + + CE VG P P + W
Sbjct: 35 VGGSVELHCEAVGSPVPEIQW 55
>pdb|3JXA|A Chain A, Immunoglobulin Domains 1-4 Of Mouse Cntn4
pdb|3JXA|B Chain B, Immunoglobulin Domains 1-4 Of Mouse Cntn4
Length = 383
Score = 25.4 bits (54), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 23/61 (37%), Gaps = 1/61 (1%)
Query: 7 IKTNPPPKVTLDIGATFVITCETVGVPTPLVSWRLNWNHIPAKCTTTSEDGVGTLTCPDI 66
I+ P V + G T + C +G P P + WR + P G L P+
Sbjct: 206 IEVQFPETVPAEKGTTVKLECFALGNPVPTILWR-RADGKPIARKARRHKSNGILEIPNF 264
Query: 67 Q 67
Q
Sbjct: 265 Q 265
>pdb|3BFO|A Chain A, Crystal Structure Of Ig-Like C2-Type 2 Domain Of The
Human Mucosa-Associated Lymphoid Tissue Lymphoma
Translocation Protein 1
pdb|3BFO|B Chain B, Crystal Structure Of Ig-Like C2-Type 2 Domain Of The
Human Mucosa-Associated Lymphoid Tissue Lymphoma
Translocation Protein 1
pdb|3BFO|C Chain C, Crystal Structure Of Ig-Like C2-Type 2 Domain Of The
Human Mucosa-Associated Lymphoid Tissue Lymphoma
Translocation Protein 1
pdb|3BFO|D Chain D, Crystal Structure Of Ig-Like C2-Type 2 Domain Of The
Human Mucosa-Associated Lymphoid Tissue Lymphoma
Translocation Protein 1
Length = 91
Score = 25.4 bits (54), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 10/23 (43%), Positives = 12/23 (52%)
Query: 20 GATFVITCETVGVPTPLVSWRLN 42
G+T V+ C VG P P W N
Sbjct: 18 GSTLVLQCVAVGSPIPHYQWFKN 40
>pdb|3KLD|A Chain A, Ptprg Cntn4 Complex
Length = 384
Score = 25.4 bits (54), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 23/61 (37%), Gaps = 1/61 (1%)
Query: 7 IKTNPPPKVTLDIGATFVITCETVGVPTPLVSWRLNWNHIPAKCTTTSEDGVGTLTCPDI 66
I+ P V + G T + C +G P P + WR + P G L P+
Sbjct: 207 IEVQFPETVPAEKGTTVKLECFALGNPVPTILWR-RADGKPIARKARRHKSNGILEIPNF 265
Query: 67 Q 67
Q
Sbjct: 266 Q 266
>pdb|3K0W|A Chain A, Crystal Structure Of The Tandem Ig-Like C2-Type 2 Domains
Of The Human Mucosa-Associated Lymphoid Tissue Lymphoma
Translocation Protein 1
Length = 218
Score = 25.4 bits (54), Expect = 9.2, Method: Composition-based stats.
Identities = 12/31 (38%), Positives = 14/31 (45%)
Query: 12 PPKVTLDIGATFVITCETVGVPTPLVSWRLN 42
P L G+T V+ C VG P P W N
Sbjct: 125 PTSQKLMPGSTLVLQCVAVGSPIPHYQWFKN 155
>pdb|3TCX|A Chain A, Structure Of Engineered Single Domain Icam-1 D1 With
High-Affinity Al Integrin I Domain Of Native C-Terminal
Helix Conformation
pdb|3TCX|C Chain C, Structure Of Engineered Single Domain Icam-1 D1 With
High-Affinity Al Integrin I Domain Of Native C-Terminal
Helix Conformation
pdb|3TCX|E Chain E, Structure Of Engineered Single Domain Icam-1 D1 With
High-Affinity Al Integrin I Domain Of Native C-Terminal
Helix Conformation
pdb|3TCX|G Chain G, Structure Of Engineered Single Domain Icam-1 D1 With
High-Affinity Al Integrin I Domain Of Native C-Terminal
Helix Conformation
pdb|3TCX|I Chain I, Structure Of Engineered Single Domain Icam-1 D1 With
High-Affinity Al Integrin I Domain Of Native C-Terminal
Helix Conformation
pdb|3TCX|K Chain K, Structure Of Engineered Single Domain Icam-1 D1 With
High-Affinity Al Integrin I Domain Of Native C-Terminal
Helix Conformation
pdb|3TCX|M Chain M, Structure Of Engineered Single Domain Icam-1 D1 With
High-Affinity Al Integrin I Domain Of Native C-Terminal
Helix Conformation
pdb|3TCX|O Chain O, Structure Of Engineered Single Domain Icam-1 D1 With
High-Affinity Al Integrin I Domain Of Native C-Terminal
Helix Conformation
pdb|3TCX|Q Chain Q, Structure Of Engineered Single Domain Icam-1 D1 With
High-Affinity Al Integrin I Domain Of Native C-Terminal
Helix Conformation
pdb|3TCX|S Chain S, Structure Of Engineered Single Domain Icam-1 D1 With
High-Affinity Al Integrin I Domain Of Native C-Terminal
Helix Conformation
pdb|3TCX|U Chain U, Structure Of Engineered Single Domain Icam-1 D1 With
High-Affinity Al Integrin I Domain Of Native C-Terminal
Helix Conformation
pdb|3TCX|W Chain W, Structure Of Engineered Single Domain Icam-1 D1 With
High-Affinity Al Integrin I Domain Of Native C-Terminal
Helix Conformation
pdb|3TCX|Y Chain Y, Structure Of Engineered Single Domain Icam-1 D1 With
High-Affinity Al Integrin I Domain Of Native C-Terminal
Helix Conformation
pdb|3TCX|AA Chain a, Structure Of Engineered Single Domain Icam-1 D1 With
High-Affinity Al Integrin I Domain Of Native C-Terminal
Helix Conformation
Length = 85
Score = 25.4 bits (54), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 12/68 (17%)
Query: 12 PPKVTLDIGATFVITC-------ETVGVPTPLVSWRL---NWNHIPAKCTTTSEDG--VG 59
P KVTL G + ++TC + +G+ TPLV L N + + ED +
Sbjct: 6 PSKVTLPRGGSVLVTCSASCDQPKLLGIETPLVKKELLLPGNNRKVYELSNVQEDSQVMC 65
Query: 60 TLTCPDIQ 67
CPD Q
Sbjct: 66 YANCPDGQ 73
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.134 0.443
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,313,165
Number of Sequences: 62578
Number of extensions: 84409
Number of successful extensions: 361
Number of sequences better than 100.0: 44
Number of HSP's better than 100.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 310
Number of HSP's gapped (non-prelim): 56
length of query: 67
length of database: 14,973,337
effective HSP length: 38
effective length of query: 29
effective length of database: 12,595,373
effective search space: 365265817
effective search space used: 365265817
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 45 (21.9 bits)