Query psy6536
Match_columns 67
No_of_seqs 165 out of 1046
Neff 8.7
Searched_HMMs 46136
Date Fri Aug 16 20:33:03 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6536.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/6536hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd05747 Ig5_Titin_like M5, fif 99.6 6E-15 1.3E-19 78.0 8.2 65 2-67 1-67 (92)
2 cd05851 Ig3_Contactin-1 Third 99.6 6.1E-15 1.3E-19 77.7 8.0 61 4-67 1-61 (88)
3 cd05762 Ig8_MLCK Eighth immuno 99.6 2.4E-14 5.1E-19 76.9 8.0 62 5-67 1-64 (98)
4 cd04968 Ig3_Contactin_like Thi 99.5 1.3E-13 2.9E-18 72.2 8.0 61 4-67 1-61 (88)
5 cd05848 Ig1_Contactin-5 First 99.5 1.3E-13 2.9E-18 73.4 7.2 60 4-66 1-65 (94)
6 cd04972 Ig_TrkABC_d4 Fourth do 99.5 3.6E-13 7.8E-18 70.9 7.3 57 11-67 6-64 (90)
7 PF07679 I-set: Immunoglobulin 99.5 2.9E-13 6.2E-18 70.6 6.8 62 5-67 1-64 (90)
8 cd05749 Ig2_Tyro3_like Second 99.5 2.6E-13 5.5E-18 70.9 6.3 55 7-66 1-56 (81)
9 cd05850 Ig1_Contactin-2 First 99.5 4.9E-13 1.1E-17 71.2 7.4 61 4-66 1-65 (94)
10 cd05849 Ig1_Contactin-1 First 99.5 6.1E-13 1.3E-17 70.9 7.6 60 4-66 1-64 (93)
11 cd05730 Ig3_NCAM-1_like Third 99.5 6.8E-13 1.5E-17 70.3 7.7 64 4-67 1-66 (95)
12 cd05737 Ig_Myomesin_like_C C-t 99.5 8.6E-13 1.9E-17 69.8 8.0 61 7-67 3-66 (92)
13 cd05870 Ig5_NCAM-2 Fifth immun 99.5 8.1E-13 1.8E-17 70.6 7.9 63 3-67 1-72 (98)
14 cd07693 Ig1_Robo First immunog 99.5 6.3E-13 1.4E-17 70.1 7.2 43 4-47 1-43 (100)
15 cd05869 Ig5_NCAM-1 Fifth immun 99.4 1.1E-12 2.5E-17 69.9 7.9 64 3-67 1-71 (97)
16 cd05894 Ig_C5_MyBP-C C5 immuno 99.4 8.6E-13 1.9E-17 69.3 7.2 54 14-67 4-60 (86)
17 cd05745 Ig3_Peroxidasin Third 99.4 4.3E-13 9.3E-18 68.4 5.6 48 19-67 1-48 (74)
18 cd05728 Ig4_Contactin-2-like F 99.4 9.4E-13 2E-17 68.8 6.9 58 7-67 2-59 (85)
19 cd05743 Ig_Perlecan_D2_like Im 99.4 8.9E-13 1.9E-17 67.8 6.5 48 20-67 1-50 (78)
20 cd05732 Ig5_NCAM-1_like Fifth 99.4 2.6E-12 5.7E-17 67.9 7.3 63 3-67 1-70 (96)
21 cd05739 Ig3_RPTP_IIa_LAR_like 99.4 1.3E-12 2.7E-17 66.2 5.8 45 20-66 1-45 (69)
22 cd05867 Ig4_L1-CAM_like Fourth 99.4 2E-12 4.2E-17 66.2 5.8 47 20-67 1-49 (76)
23 cd05845 Ig2_L1-CAM_like Second 99.4 1.9E-12 4.1E-17 69.6 5.7 64 4-67 2-66 (95)
24 cd05868 Ig4_NrCAM Fourth immun 99.3 4.2E-12 9.2E-17 65.2 5.8 47 20-67 1-49 (76)
25 cd04978 Ig4_L1-NrCAM_like Four 99.3 4.5E-12 9.8E-17 64.4 5.8 48 20-67 1-49 (76)
26 cd05722 Ig1_Neogenin First imm 99.3 6.9E-12 1.5E-16 66.5 6.7 40 7-47 2-41 (95)
27 cd05852 Ig5_Contactin-1 Fifth 99.3 5.1E-12 1.1E-16 64.7 5.7 45 20-67 1-47 (73)
28 cd05892 Ig_Myotilin_C C-termin 99.3 7.1E-12 1.5E-16 64.5 6.0 45 23-67 1-49 (75)
29 cd05740 Ig_CEACAM_D4 Fourth im 99.3 1.5E-11 3.3E-16 65.2 7.4 60 5-67 2-63 (91)
30 cd05758 Ig5_KIRREL3-like Fifth 99.3 2.4E-11 5.3E-16 64.8 8.2 63 3-67 1-72 (98)
31 cd04975 Ig4_SCFR_like Fourth i 99.3 1.6E-11 3.4E-16 66.5 7.4 56 12-67 10-73 (101)
32 cd05724 Ig2_Robo Second immuno 99.3 1.5E-11 3.3E-16 63.7 7.0 55 13-67 4-59 (86)
33 cd04967 Ig1_Contactin First Ig 99.3 2E-11 4.4E-16 64.3 7.1 59 5-66 2-65 (91)
34 cd05773 Ig8_hNephrin_like Eigh 99.3 3.1E-11 6.7E-16 65.9 7.5 66 1-66 1-76 (109)
35 cd05856 Ig2_FGFRL1-like Second 99.3 1.8E-11 4E-16 62.6 6.2 53 15-67 4-56 (82)
36 cd05857 Ig2_FGFR Second immuno 99.3 4.4E-11 9.6E-16 61.9 6.8 53 15-67 4-59 (85)
37 cd05859 Ig4_PDGFR-alpha Fourth 99.2 7.8E-11 1.7E-15 63.6 7.5 55 13-67 11-73 (101)
38 KOG3513|consensus 99.2 1.1E-11 2.3E-16 86.9 5.0 64 2-67 329-394 (1051)
39 cd05893 Ig_Palladin_C C-termin 99.2 2.4E-11 5.1E-16 62.5 5.1 44 23-67 1-49 (75)
40 cd05748 Ig_Titin_like Immunogl 99.2 4.6E-11 1E-15 60.6 6.1 46 22-67 1-48 (74)
41 cd05891 Ig_M-protein_C C-termi 99.2 9.2E-11 2E-15 62.1 7.5 56 12-67 8-66 (92)
42 cd05865 Ig1_NCAM-1 First immun 99.2 1.1E-10 2.3E-15 62.6 7.1 58 9-67 5-68 (96)
43 cd05733 Ig6_L1-CAM_like Sixth 99.2 4.4E-11 9.5E-16 61.4 5.3 44 23-66 1-46 (77)
44 cd04969 Ig5_Contactin_like Fif 99.2 7.4E-11 1.6E-15 59.8 5.9 45 20-67 1-47 (73)
45 cd05874 Ig6_NrCAM Sixth immuno 99.2 4.8E-11 1E-15 61.5 5.2 44 23-66 1-46 (77)
46 cd05875 Ig6_hNeurofascin_like 99.2 5.5E-11 1.2E-15 61.3 5.4 42 23-66 1-46 (77)
47 cd05876 Ig3_L1-CAM Third immun 99.2 6.4E-11 1.4E-15 59.9 5.5 44 23-67 1-44 (71)
48 cd05738 Ig2_RPTP_IIa_LAR_like 99.2 5.2E-11 1.1E-15 60.7 5.2 44 23-67 1-46 (74)
49 cd05882 Ig1_Necl-1 First (N-te 99.2 1.4E-10 3E-15 62.1 7.0 55 13-67 5-70 (95)
50 cd05760 Ig2_PTK7 Second immuno 99.2 6.3E-11 1.4E-15 60.8 5.3 45 23-67 1-46 (77)
51 cd05723 Ig4_Neogenin Fourth im 99.2 1.2E-10 2.7E-15 58.9 5.6 43 22-67 1-45 (71)
52 cd05726 Ig4_Robo Fhird immunog 99.2 1.4E-10 3.1E-15 60.9 5.8 45 20-67 1-55 (90)
53 cd05744 Ig_Myotilin_C_like Imm 99.2 1.8E-10 3.9E-15 58.9 5.9 45 23-67 1-49 (75)
54 cd05746 Ig4_Peroxidasin Fourth 99.2 8.6E-11 1.9E-15 59.1 4.6 42 23-67 1-44 (69)
55 cd05725 Ig3_Robo Third immunog 99.2 1.5E-10 3.3E-15 58.0 5.3 42 23-67 1-43 (69)
56 cd04976 Ig2_VEGFR Second immun 99.1 1.5E-10 3.3E-15 58.7 5.3 43 23-67 1-43 (71)
57 cd05863 Ig2_VEGFR-3 Second imm 99.1 1.2E-10 2.7E-15 58.8 4.5 38 23-66 1-38 (67)
58 cd07702 Ig2_VEGFR-1 Second imm 99.1 2.4E-10 5.3E-15 58.5 5.3 44 23-67 1-44 (72)
59 cd05763 Ig_1 Subgroup of the i 99.1 2.5E-10 5.4E-15 58.1 5.2 43 23-67 1-48 (75)
60 cd05754 Ig3_Perlecan_like Thir 99.1 9.7E-10 2.1E-14 57.1 7.4 55 9-67 5-60 (85)
61 cd05764 Ig_2 Subgroup of the i 99.1 3.2E-10 6.8E-15 57.4 5.3 46 20-66 1-47 (74)
62 KOG3513|consensus 99.1 2.5E-10 5.4E-15 80.3 6.4 63 3-67 239-302 (1051)
63 cd04973 Ig1_FGFR First immunog 99.1 1.2E-09 2.5E-14 56.3 7.4 51 14-67 3-53 (79)
64 cd05873 Ig_Sema4D_like Immunog 99.1 7E-10 1.5E-14 58.7 6.5 52 13-67 4-56 (87)
65 cd05854 Ig6_Contactin-2 Sixth 99.1 5.2E-10 1.1E-14 58.6 5.8 47 21-67 1-55 (85)
66 cd05864 Ig2_VEGFR-2 Second imm 99.1 3.2E-10 6.9E-15 57.7 4.8 42 23-67 1-42 (70)
67 cd05752 Ig1_FcgammaR_like Frst 99.1 8.1E-10 1.7E-14 57.2 6.4 41 5-46 1-42 (78)
68 cd05731 Ig3_L1-CAM_like Third 99.1 5E-10 1.1E-14 56.0 5.2 44 23-67 1-44 (71)
69 cd05866 Ig1_NCAM-2 First immun 99.1 1E-09 2.3E-14 58.4 6.5 54 13-67 8-64 (92)
70 cd04970 Ig6_Contactin_like Six 99.1 7.9E-10 1.7E-14 57.5 5.8 47 21-67 1-55 (85)
71 cd04977 Ig1_NCAM-1_like First 99.0 1.6E-09 3.4E-14 57.4 6.4 57 9-67 5-65 (92)
72 KOG4194|consensus 99.0 3.9E-10 8.5E-15 76.4 4.9 45 2-47 610-655 (873)
73 cd04974 Ig3_FGFR Third immunog 99.0 4.5E-10 9.8E-15 59.1 4.1 24 20-43 1-24 (90)
74 cd05735 Ig8_DSCAM Eight immuno 99.0 1.1E-09 2.4E-14 57.6 5.5 47 20-66 1-54 (88)
75 cd05734 Ig7_DSCAM Seventh immu 99.0 1.4E-09 3.1E-14 55.8 4.7 45 23-67 1-52 (79)
76 cd05858 Ig3_FGFR-2 Third immun 99.0 3.6E-09 7.8E-14 55.6 6.3 23 20-42 1-23 (90)
77 cd04971 Ig_TrKABC_d5 Fifth dom 99.0 1.8E-09 4E-14 56.2 5.0 44 24-67 2-54 (81)
78 cd05855 Ig_TrkB_d5 Fifth domai 99.0 1.7E-09 3.8E-14 56.3 4.9 43 25-67 3-52 (79)
79 cd05765 Ig_3 Subgroup of the i 99.0 3.1E-09 6.6E-14 54.3 5.6 24 20-43 1-24 (81)
80 cd07701 Ig1_Necl-3 First (N-te 99.0 6.7E-09 1.5E-13 55.4 7.0 55 13-67 5-70 (95)
81 cd05736 Ig2_Follistatin_like S 98.9 4.1E-09 8.9E-14 53.6 5.4 45 23-67 1-47 (76)
82 cd05898 Ig5_KIRREL3 Fifth immu 98.9 2.1E-08 4.5E-13 54.1 8.2 63 3-67 1-72 (98)
83 cd04979 Ig_Semaphorin_C Immuno 98.9 7E-09 1.5E-13 54.3 6.2 53 13-67 4-59 (89)
84 PHA02826 IL-1 receptor-like pr 98.9 9.9E-09 2.2E-13 62.4 7.5 52 14-67 138-196 (227)
85 cd05750 Ig_Pro_neuregulin Immu 98.9 5.2E-09 1.1E-13 52.8 5.2 45 23-67 1-51 (75)
86 cd05727 Ig2_Contactin-2-like S 98.9 8.5E-09 1.9E-13 55.5 6.0 59 7-67 5-68 (96)
87 cd05756 Ig1_IL1R_like First im 98.9 7.3E-09 1.6E-13 55.2 5.5 53 14-67 8-68 (94)
88 KOG4221|consensus 98.9 5.1E-09 1.1E-13 74.6 5.9 61 6-67 239-299 (1381)
89 cd05853 Ig6_Contactin-4 Sixth 98.9 1.1E-08 2.3E-13 53.9 5.7 47 21-67 1-55 (85)
90 cd05742 Ig1_VEGFR_like First i 98.9 7.9E-09 1.7E-13 53.5 5.0 48 20-67 1-57 (84)
91 smart00408 IGc2 Immunoglobulin 98.9 1.5E-08 3.3E-13 48.3 5.6 46 19-66 1-46 (63)
92 cd05729 Ig2_FGFR_like Second i 98.8 2.6E-08 5.6E-13 50.9 6.5 33 15-47 4-36 (85)
93 cd07690 Ig1_CD4 First immunogl 98.8 5E-08 1.1E-12 52.2 6.5 30 15-44 2-31 (94)
94 cd05717 Ig1_Necl-1-3_like Firs 98.7 1E-07 2.3E-12 50.3 7.0 55 13-67 5-70 (95)
95 cd05861 Ig1_PDGFR-alphabeta Fr 98.7 4.1E-08 9E-13 51.1 5.0 27 20-46 1-27 (84)
96 PF00047 ig: Immunoglobulin do 98.7 1.2E-07 2.6E-12 46.4 6.3 48 20-67 1-53 (64)
97 PHA02785 IL-beta-binding prote 98.7 1.4E-07 3.1E-12 59.7 7.8 42 4-47 221-265 (326)
98 cd05895 Ig_Pro_neuregulin-1 Im 98.7 7.7E-08 1.7E-12 48.9 5.1 45 23-67 1-52 (76)
99 cd05757 Ig2_IL1R_like Second i 98.7 6.6E-08 1.4E-12 51.4 4.8 51 15-67 5-60 (92)
100 smart00409 IG Immunoglobulin. 98.6 7.6E-07 1.7E-11 44.3 7.4 54 14-67 3-59 (86)
101 smart00410 IG_like Immunoglobu 98.6 7.6E-07 1.7E-11 44.3 7.4 54 14-67 3-59 (86)
102 KOG4222|consensus 98.5 1.8E-07 3.9E-12 66.7 3.8 43 3-46 30-72 (1281)
103 cd05753 Ig2_FcgammaR_like Seco 98.4 2E-06 4.3E-11 44.7 6.3 39 7-47 3-42 (83)
104 PF13895 Ig_2: Immunoglobulin 98.4 8.3E-07 1.8E-11 44.5 4.2 40 5-47 2-41 (80)
105 cd05759 Ig2_KIRREL3-like Secon 98.4 2.3E-06 5E-11 44.0 5.9 26 23-48 2-28 (82)
106 KOG4222|consensus 98.4 4.3E-07 9.3E-12 64.8 3.9 64 3-67 314-384 (1281)
107 cd05771 IgC_Tapasin_R Tapasin- 98.4 4.7E-06 1E-10 46.7 7.4 43 2-45 36-80 (139)
108 cd05871 Ig_Semaphorin_classIII 98.4 2.7E-06 5.9E-11 45.0 5.9 27 15-42 6-32 (91)
109 cd04983 IgV_TCR_alpha_like Imm 98.4 6.2E-06 1.3E-10 44.2 7.4 33 11-43 4-36 (109)
110 cd05899 IgV_TCR_beta Immunoglo 98.3 7.4E-06 1.6E-10 44.2 7.1 33 9-43 3-35 (110)
111 cd05881 Ig1_Necl-2 First (N-te 98.3 9.1E-06 2E-10 43.6 7.3 55 13-67 5-70 (95)
112 cd07705 Ig2_Necl-1 Second immu 98.3 4.6E-06 9.9E-11 43.4 5.9 26 23-48 2-28 (83)
113 cd05761 Ig2_Necl-1-4_like Seco 98.3 4.8E-06 1.1E-10 43.1 5.8 27 22-48 1-28 (82)
114 PF13927 Ig_3: Immunoglobulin 98.3 7.8E-07 1.7E-11 44.0 2.7 35 4-40 1-36 (75)
115 cd00098 IgC Immunoglobulin Con 98.3 3.8E-06 8.2E-11 43.9 5.1 31 18-48 11-43 (95)
116 KOG4221|consensus 98.3 4E-06 8.8E-11 60.4 6.5 63 3-67 139-201 (1381)
117 cd04980 IgV_L_kappa Immunoglob 98.2 1.8E-05 3.8E-10 42.5 7.3 35 7-42 3-38 (106)
118 cd04982 IgV_TCR_gamma Immunogl 98.2 1.5E-05 3.2E-10 43.3 7.1 30 13-42 6-37 (116)
119 cd07698 IgC_MHC_I_alpha3 Class 98.2 1.4E-05 3.1E-10 42.2 6.5 39 4-46 2-42 (93)
120 cd05885 Ig2_Necl-4 Second immu 98.1 1.4E-05 3.1E-10 41.6 5.6 26 22-47 1-27 (80)
121 cd07699 IgC_L Immunoglobulin C 98.1 7.5E-06 1.6E-10 44.0 4.6 45 4-48 1-47 (100)
122 cd05862 Ig1_VEGFR First immuno 98.1 1.1E-05 2.5E-10 42.1 5.2 27 20-46 1-29 (86)
123 cd05884 Ig2_Necl-3 Second immu 98.1 1.9E-05 4E-10 41.2 5.7 26 23-48 2-28 (83)
124 cd05766 IgC_MHC_II_beta Class 98.1 3.6E-05 7.8E-10 41.0 6.4 31 18-48 12-44 (94)
125 cd00099 IgV Immunoglobulin var 98.0 5.2E-05 1.1E-09 40.1 6.6 28 16-43 2-30 (105)
126 cd05769 IgC_TCR_beta T cell re 98.0 2.2E-05 4.7E-10 43.5 5.2 44 4-47 2-47 (115)
127 cd05872 Ig_Sema4B_like Immunog 98.0 3.3E-05 7.2E-10 40.7 5.4 33 14-47 5-37 (85)
128 cd05751 Ig1_LILRB1_like First 97.9 0.0001 2.3E-09 38.6 6.4 40 4-46 2-41 (91)
129 cd05772 IgC_SIRP Signal-regula 97.9 6.8E-05 1.5E-09 41.2 5.7 32 16-47 17-50 (111)
130 smart00407 IGc1 Immunoglobulin 97.8 0.00011 2.4E-09 37.3 5.4 25 23-47 2-28 (75)
131 PF08205 C2-set_2: CD80-like C 97.8 3E-05 6.5E-10 40.2 3.3 40 5-46 1-41 (89)
132 cd05741 Ig_CEACAM_D1_like Firs 97.8 0.00016 3.4E-09 37.5 5.6 26 20-45 1-26 (92)
133 cd05767 IgC_MHC_II_alpha Class 97.8 0.00018 3.9E-09 38.4 5.8 46 18-63 13-62 (94)
134 cd04984 IgV_L_lambda Immunoglo 97.7 0.00024 5.2E-09 37.5 5.8 28 16-43 2-31 (98)
135 PHA02826 IL-1 receptor-like pr 97.7 0.00014 3.1E-09 44.3 5.5 33 13-45 30-73 (227)
136 cd05770 IgC_beta2m Class I maj 97.7 0.00022 4.7E-09 38.1 5.3 45 18-63 13-61 (93)
137 cd05768 IgC_CH4 CH4 domain (fo 97.6 5.4E-05 1.2E-09 40.9 2.8 32 16-47 12-45 (102)
138 cd05755 Ig2_ICAM-1_like Second 97.6 0.00021 4.6E-09 38.7 5.0 32 16-47 12-46 (100)
139 cd05897 Ig2_IL1R2_like Second 97.6 0.00017 3.7E-09 38.7 4.3 53 15-67 5-63 (95)
140 KOG4194|consensus 97.6 6.6E-05 1.4E-09 51.8 3.2 42 4-46 706-748 (873)
141 PF07654 C1-set: Immunoglobuli 97.6 0.00053 1.1E-08 35.3 6.0 31 18-48 6-38 (83)
142 cd05900 Ig_Aggrecan Immunoglob 97.6 0.00044 9.5E-09 38.0 5.7 24 19-42 1-36 (112)
143 cd07696 IgC_CH3 CH3 domain (th 97.6 0.00012 2.6E-09 39.2 3.3 30 16-45 10-42 (96)
144 PHA02785 IL-beta-binding prote 97.5 0.00028 6E-09 44.9 5.2 30 16-45 37-71 (326)
145 cd05883 Ig2_Necl-2 Second immu 97.5 0.00043 9.4E-09 36.2 4.9 27 22-48 1-28 (82)
146 cd05860 Ig4_SCFR Fourth immuno 97.4 0.00075 1.6E-08 36.7 5.3 34 13-46 11-45 (101)
147 cd07706 IgV_TCR_delta Immunogl 97.4 0.0021 4.5E-08 34.9 7.0 34 8-42 3-37 (116)
148 cd05716 Ig_pIgR Immunoglobulin 97.3 0.0029 6.4E-08 33.2 6.4 29 15-43 2-31 (98)
149 cd05877 Ig_LP_like Immunoglobu 97.2 0.0028 6E-08 33.8 5.9 25 19-43 1-31 (106)
150 cd07697 IgC_TCR_gamma T cell r 97.1 0.0012 2.5E-08 35.5 4.1 31 17-47 13-45 (96)
151 cd05847 IgC_CH2_IgE CH2 domain 97.1 0.0023 4.9E-08 34.1 4.8 29 19-47 13-43 (94)
152 cd00096 Ig Immunoglobulin doma 97.0 0.0021 4.5E-08 29.8 4.1 24 23-46 1-24 (74)
153 PHA02987 Ig domain OX-2-like p 97.0 0.0038 8.3E-08 37.4 5.5 32 14-45 24-56 (189)
154 cd05880 Ig_EVA1 Immunoglobulin 97.0 0.0096 2.1E-07 32.5 6.8 29 13-41 6-38 (115)
155 cd05711 Ig_FcalphaRI Immunoglo 96.9 0.0093 2E-07 31.5 6.3 39 5-46 2-40 (94)
156 cd04986 IgC_CH2 CH2 domain (se 96.9 0.0027 5.8E-08 34.3 4.2 39 6-45 6-47 (99)
157 cd05718 Ig1_PVR_like First imm 96.9 0.0048 1E-07 32.2 5.1 24 21-44 1-27 (98)
158 cd05878 Ig_Aggrecan_like Immun 96.9 0.007 1.5E-07 32.9 5.8 24 19-42 1-34 (110)
159 cd05720 Ig_CD8_alpha Immunoglo 96.9 0.01 2.3E-07 31.7 6.3 28 16-43 2-29 (104)
160 cd05774 Ig_CEACAM_D1 First imm 96.8 0.016 3.4E-07 31.5 6.8 26 16-43 9-36 (105)
161 cd05879 Ig_P0 Immunoglobulin ( 96.8 0.0079 1.7E-07 33.2 5.6 28 14-41 7-38 (116)
162 cd07704 Ig2_Nectin-3-4_like Se 96.7 0.0049 1.1E-07 33.2 4.4 32 12-43 8-41 (97)
163 cd05713 Ig_MOG_like Immunoglob 96.7 0.013 2.9E-07 30.7 5.9 24 20-43 1-27 (100)
164 cd07703 Ig2_Nectin-2_like Seco 96.7 0.016 3.4E-07 31.0 6.1 21 22-42 17-38 (95)
165 cd07694 Ig2_CD4 Second immunog 96.5 0.016 3.5E-07 30.8 5.2 30 16-45 10-41 (88)
166 cd05775 Ig_SLAM-CD84_like_N N- 96.4 0.0084 1.8E-07 31.7 4.1 26 18-43 2-28 (97)
167 cd07700 IgV_CD8_beta Immunoglo 96.4 0.0083 1.8E-07 32.2 4.0 28 16-43 2-30 (107)
168 cd05712 Ig_Siglec_N Immunoglob 96.4 0.032 6.9E-07 30.5 6.2 31 13-43 7-43 (119)
169 KOG3515|consensus 96.3 0.005 1.1E-07 43.3 3.3 41 6-47 9-50 (741)
170 PF07686 V-set: Immunoglobulin 96.3 0.0074 1.6E-07 31.6 3.3 32 12-43 8-40 (114)
171 cd05846 Ig1_MRC-OX-2_like Firs 96.2 0.031 6.6E-07 29.4 5.6 24 20-43 1-25 (97)
172 smart00406 IGv Immunoglobulin 96.2 0.042 9.2E-07 27.1 5.8 22 22-43 1-24 (81)
173 cd04985 IgC_CH1 CH1 domain (fi 96.1 0.029 6.3E-07 29.8 5.1 27 19-45 15-43 (95)
174 cd05896 Ig1_IL1RAPL-1_like Fir 96.0 0.053 1.1E-06 29.6 5.8 32 15-46 10-52 (104)
175 PHA03052 Hypothetical protein; 95.9 0.024 5.1E-07 28.8 3.9 34 13-46 5-41 (69)
176 cd05714 Ig_CSPGs_LP Immunoglob 95.8 0.018 3.9E-07 30.6 3.5 24 19-42 1-30 (106)
177 cd05719 Ig2_PVR_like Second im 95.8 0.018 3.9E-07 30.7 3.3 22 21-42 16-38 (95)
178 PF06328 Lep_receptor_Ig: Ig-l 95.6 0.11 2.5E-06 27.4 5.9 34 15-48 13-51 (89)
179 cd05715 Ig_P0-like Immunoglobu 95.6 0.035 7.7E-07 30.1 4.1 29 13-41 6-38 (116)
180 cd05902 Ig_Neurocan Immunoglob 95.3 0.13 2.8E-06 28.1 5.7 24 19-42 1-31 (110)
181 PHA03376 BARF1; Provisional 95.3 0.038 8.2E-07 33.6 3.8 26 20-45 139-164 (221)
182 cd04981 IgV_H Immunoglobulin ( 95.2 0.076 1.6E-06 29.0 4.7 29 14-42 6-36 (117)
183 cd05901 Ig_Versican Immunoglob 94.3 0.49 1.1E-05 26.3 6.6 24 19-42 1-35 (117)
184 cd07692 Ig_CD3_epsilon Immunog 94.2 0.057 1.2E-06 27.2 2.4 27 18-47 5-31 (65)
185 PF06832 BiPBP_C: Penicillin-B 94.0 0.42 9.2E-06 24.8 7.9 43 3-46 9-54 (89)
186 cd07691 Ig_CD3_gamma_delta Imm 93.2 0.25 5.5E-06 25.1 3.7 41 19-64 5-51 (69)
187 cd05721 IgV_CTLA-4 Immunoglobu 93.0 0.31 6.7E-06 27.1 4.1 28 15-42 8-38 (115)
188 cd05889 Ig1_DNAM-1_like First 92.3 0.9 2E-05 24.2 5.3 23 21-43 1-24 (96)
189 cd05887 Ig1_Nectin-3_like Firs 91.5 1.2 2.7E-05 23.7 5.3 22 21-42 1-23 (96)
190 PHA02865 MHC-like TNF binding 90.3 1.4 3.1E-05 28.7 5.6 21 22-42 216-238 (338)
191 cd07689 Ig2_VCAM-1 Second immu 90.3 0.78 1.7E-05 24.9 3.8 37 4-44 3-42 (99)
192 cd05890 Ig2_Nectin-1_like Seco 88.1 0.52 1.1E-05 25.5 2.1 20 23-42 23-43 (98)
193 cd05886 Ig1_Nectin-1_like Firs 85.3 4 8.7E-05 21.7 5.8 20 22-42 2-26 (99)
194 KOG3515|consensus 83.3 0.72 1.6E-05 33.0 1.5 33 15-47 216-249 (741)
195 KOG1026|consensus 78.5 2 4.3E-05 31.0 2.3 32 15-46 202-233 (774)
196 PF07354 Sp38: Zona-pellucida- 78.0 4 8.7E-05 25.9 3.3 34 33-67 11-45 (271)
197 PHA03112 IL-18 binding protein 77.6 5.3 0.00011 23.1 3.5 26 18-43 36-63 (141)
198 PF08204 V-set_CD47: CD47 immu 75.7 2.1 4.5E-05 24.3 1.5 29 18-46 25-58 (130)
199 KOG4597|consensus 74.0 1.9 4E-05 29.7 1.2 28 15-42 206-233 (560)
200 cd05888 Ig1_Nectin-4_like Frst 68.1 8.9 0.00019 20.1 2.8 21 22-42 2-25 (100)
201 PF02440 Adeno_E3_CR1: Adenovi 56.9 14 0.0003 18.4 2.2 20 17-40 2-21 (63)
202 PHA03269 envelope glycoprotein 48.7 74 0.0016 22.4 5.1 31 17-47 339-372 (566)
203 PF03921 ICAM_N: Intercellular 48.4 22 0.00049 18.9 2.2 27 13-40 11-38 (91)
204 PHA03271 envelope glycoprotein 36.9 85 0.0018 21.7 4.0 31 17-47 257-290 (490)
205 PF11910 NdhO: Cyanobacterial 35.1 66 0.0014 16.2 3.0 33 6-43 30-62 (67)
206 PHA03273 envelope glycoprotein 33.8 1E+02 0.0022 21.5 4.0 31 17-47 247-280 (486)
207 COG4276 Uncharacterized conser 31.5 74 0.0016 18.5 2.7 16 18-33 45-60 (153)
208 PF05688 DUF824: Salmonella re 30.8 67 0.0014 15.0 2.8 26 15-40 7-35 (47)
209 TIGR02073 PBP_1c penicillin-bi 29.9 1.8E+02 0.0038 21.2 4.9 25 22-47 666-690 (727)
210 KOG3743|consensus 29.6 63 0.0014 22.9 2.6 29 16-44 379-407 (622)
211 PHA03270 envelope glycoprotein 29.3 2E+02 0.0043 20.0 5.9 31 17-47 231-264 (466)
212 COG3908 Uncharacterized protei 28.8 52 0.0011 16.8 1.6 11 26-36 32-42 (77)
213 PF09065 Haemadin: Haemadin; 27.7 17 0.00038 14.6 -0.2 9 28-36 18-26 (27)
214 PHA03042 CD47-like protein; Pr 26.7 1.1E+02 0.0023 19.9 3.0 28 19-46 30-62 (286)
215 PF14459 Prok-E2_C: Prokaryoti 26.2 88 0.0019 17.5 2.3 22 17-39 60-81 (131)
216 PHA02607 wac fibritin; Provisi 26.0 26 0.00057 24.0 0.3 16 33-48 17-32 (454)
217 PHA02982 hypothetical protein; 23.7 1.5E+02 0.0033 18.6 3.3 29 16-44 35-64 (251)
218 KOG1769|consensus 23.5 37 0.00081 18.5 0.6 24 25-48 49-72 (99)
219 PF05428 CRF-BP: Corticotropin 23.3 88 0.0019 20.5 2.3 40 6-47 84-124 (311)
220 smart00089 PKD Repeats in poly 21.6 1.2E+02 0.0025 14.6 5.7 28 18-45 12-40 (79)
221 COG3738 Uncharacterized protei 20.6 1.5E+02 0.0033 17.9 2.7 29 36-66 146-177 (200)
222 PF11420 Subtilosin_A: Bacteri 20.5 20 0.00044 15.4 -0.7 14 24-38 10-23 (35)
223 PF12561 TagA: ToxR activated 20.5 1.9E+02 0.004 16.7 3.0 32 26-61 68-104 (135)
224 PF09866 DUF2093: Uncharacteri 20.3 98 0.0021 14.2 1.5 11 25-35 8-18 (42)
225 PF01681 C6: C6 domain; Inter 20.1 93 0.002 16.0 1.7 19 22-46 68-87 (92)
No 1
>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins. Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.
Probab=99.62 E-value=6e-15 Score=78.01 Aligned_cols=65 Identities=29% Similarity=0.452 Sum_probs=51.6
Q ss_pred CcCCeEEeCCCCCEEEcCCCcEEEEeEecccCCCEEEEEECCccCCC--ceeeeeecCCeEEEEccCC
Q psy6536 2 TSPAYIKTNPPPKVTLDIGATFVITCETVGVPTPLVSWRLNWNHIPA--KCTTTSEDGVGTLTCPDIQ 67 (67)
Q Consensus 2 ~~~P~~~~~~~~~~~~~~g~~~~l~C~a~G~P~P~i~W~~~g~~~~~--~~~~~~~~~~g~L~I~~vq 67 (67)
+.||.|+..| .+..+.+|+++.|.|.+.|.|.|.+.|.++|..+.. ++........++|.|.+++
T Consensus 1 ~~~~~~~~~p-~~~~~~~G~~~~L~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~~~ 67 (92)
T cd05747 1 TLPATILTKP-RSLTVSEGESARFSCDVDGEPAPTVTWMREGQIIVSSQRHQITSTEYKSTFEISKVQ 67 (92)
T ss_pred CCCCcccccC-ccEEEeCCCcEEEEEEEeecCCCEEEEEECCEECCCCCcEEEEEcCCeeEEEECCCC
Confidence 4689999877 457899999999999999999999999999987742 4443333345789998874
No 2
>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1. Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.62 E-value=6.1e-15 Score=77.74 Aligned_cols=61 Identities=25% Similarity=0.402 Sum_probs=48.3
Q ss_pred CCeEEeCCCCCEEEcCCCcEEEEeEecccCCCEEEEEECCccCCCceeeeeecCCeEEEEccCC
Q psy6536 4 PAYIKTNPPPKVTLDIGATFVITCETVGVPTPLVSWRLNWNHIPAKCTTTSEDGVGTLTCPDIQ 67 (67)
Q Consensus 4 ~P~~~~~~~~~~~~~~g~~~~l~C~a~G~P~P~i~W~~~g~~~~~~~~~~~~~~~g~L~I~~vq 67 (67)
||.|...+. +..+.+|+++.|.|.|.|.|.|.|+|.|++..++...... ...++|.|.+++
T Consensus 1 ~p~i~~~~~-~~~~~~G~~v~l~C~~~G~P~P~v~W~k~~~~~~~~~~~~--~~~~~L~I~~v~ 61 (88)
T cd05851 1 PADINVKFK-DTYALKGQNVTLECFALGNPVPVIRWRKILEPMPATAEIS--MSGAVLKIFNIQ 61 (88)
T ss_pred CCceEEccc-cEEEeCCCcEEEEEEecccCCCEEEEEECCcCCCCCCEEe--cCCCEEEECcCC
Confidence 688998875 4688999999999999999999999999998876432221 123578888874
No 3
>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has
Probab=99.58 E-value=2.4e-14 Score=76.92 Aligned_cols=62 Identities=16% Similarity=0.268 Sum_probs=49.5
Q ss_pred CeEEeCCCCCEEEcCCCcEEEEeEecccCCCEEEEEECCccCCC--ceeeeeecCCeEEEEccCC
Q psy6536 5 AYIKTNPPPKVTLDIGATFVITCETVGVPTPLVSWRLNWNHIPA--KCTTTSEDGVGTLTCPDIQ 67 (67)
Q Consensus 5 P~~~~~~~~~~~~~~g~~~~l~C~a~G~P~P~i~W~~~g~~~~~--~~~~~~~~~~g~L~I~~vq 67 (67)
|.|++.| +...+..|+.+.|.|.+.|.|.|.+.|+|+|..+.+ ++........+.|+|.+++
T Consensus 1 p~~~~~p-~~~~v~~G~~v~l~C~~~G~p~p~v~W~kdg~~l~~~~~~~~~~~~~~s~L~I~~~~ 64 (98)
T cd05762 1 PQIIQFP-EDMKVRAGESVELFCKVTGTQPITCTWMKFRKQIQEGEGIKIENTENSSKLTITEGQ 64 (98)
T ss_pred CceEECC-cCEEEECCCEEEEEEEEcccCCCceEEEECCEEecCCCcEEEEecCCeeEEEECCCC
Confidence 6788876 457999999999999999999999999999998853 3433333445679998874
No 4
>cd04968 Ig3_Contactin_like Third Ig domain of contactin. Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.53 E-value=1.3e-13 Score=72.19 Aligned_cols=61 Identities=25% Similarity=0.453 Sum_probs=46.4
Q ss_pred CCeEEeCCCCCEEEcCCCcEEEEeEecccCCCEEEEEECCccCCCceeeeeecCCeEEEEccCC
Q psy6536 4 PAYIKTNPPPKVTLDIGATFVITCETVGVPTPLVSWRLNWNHIPAKCTTTSEDGVGTLTCPDIQ 67 (67)
Q Consensus 4 ~P~~~~~~~~~~~~~~g~~~~l~C~a~G~P~P~i~W~~~g~~~~~~~~~~~~~~~g~L~I~~vq 67 (67)
||.+...| ....+.+|+++.|.|.+.|.|.|.++|.+++..+....... ...++|.|.+++
T Consensus 1 p~~~~~~p-~~~~~~~g~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~--~~~~~L~i~~v~ 61 (88)
T cd04968 1 PSIIVVFP-KDTYALKGQNVTLECFALGNPVPQIKWRKVDGSMPSSAEIS--MSGAVLKIPNIQ 61 (88)
T ss_pred CCcEEECC-CceEEeCCCcEEEEEEeeEeCCCEEEEEECCCcCCCccEEE--EeCCEEEECCCC
Confidence 56666666 45688999999999999999999999999988664322111 234789998875
No 5
>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5. Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.
Probab=99.51 E-value=1.3e-13 Score=73.43 Aligned_cols=60 Identities=20% Similarity=0.284 Sum_probs=43.5
Q ss_pred CCeEEeCCCCCEEEc---CCCcEEEEeEecccCCCEEEEEECCccCCC--ceeeeeecCCeEEEEccC
Q psy6536 4 PAYIKTNPPPKVTLD---IGATFVITCETVGVPTPLVSWRLNWNHIPA--KCTTTSEDGVGTLTCPDI 66 (67)
Q Consensus 4 ~P~~~~~~~~~~~~~---~g~~~~l~C~a~G~P~P~i~W~~~g~~~~~--~~~~~~~~~~g~L~I~~v 66 (67)
.|.|+..|.+ +.+. +|+.+.|.|.|.|.|.|.|+|.|+|..+.. .... .. ..|+|.|.++
T Consensus 1 ~P~f~~~p~~-~~~~~~~~g~~v~l~C~~~G~P~P~i~W~k~g~~l~~~~~~~~-~~-~~g~L~i~~~ 65 (94)
T cd05848 1 GPVFVQEPDD-AIFPTDSDEKKVILNCEARGNPVPTYRWLRNGTEIDTESDYRY-SL-IDGNLIISNP 65 (94)
T ss_pred CCeeEECCCc-EEccCCCCCCEEEEEEEeeecCCCEEEEEECCeECccCCCceE-Ee-eCCeEEEccC
Confidence 3889988765 4443 478899999999999999999999998842 1111 11 2367887764
No 6
>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo
Probab=99.48 E-value=3.6e-13 Score=70.91 Aligned_cols=57 Identities=23% Similarity=0.348 Sum_probs=42.0
Q ss_pred CCCCEEEcCCCcEEEEeEecccCCCEEEEEECCccCCC-ce-eeeeecCCeEEEEccCC
Q psy6536 11 PPPKVTLDIGATFVITCETVGVPTPLVSWRLNWNHIPA-KC-TTTSEDGVGTLTCPDIQ 67 (67)
Q Consensus 11 ~~~~~~~~~g~~~~l~C~a~G~P~P~i~W~~~g~~~~~-~~-~~~~~~~~g~L~I~~vq 67 (67)
+++...+.+|+.+.|.|.|.|.|.|.|+|.++|..+.. +. ........++|.|.+++
T Consensus 6 ~p~~~~v~~G~~v~l~C~~~G~P~p~v~W~~~g~~~~~~~~~~~~~~~~~~~L~I~~v~ 64 (90)
T cd04972 6 GPNATVVYEGGTATIRCTAEGSPLPKVEWIIAGLIVIQTRTDTLETTVDIYNLQLSNIT 64 (90)
T ss_pred CCcCEEEcCCCcEEEEEEEEEcCCCeEEEEECCEEccCCccEEEEecCCEEEEEEecCC
Confidence 34556799999999999999999999999999987743 11 11122233578888764
No 7
>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....
Probab=99.48 E-value=2.9e-13 Score=70.57 Aligned_cols=62 Identities=26% Similarity=0.531 Sum_probs=50.5
Q ss_pred CeEEeCCCCCEEEcCCCcEEEEeEecccCCCEEEEEECCccCC--CceeeeeecCCeEEEEccCC
Q psy6536 5 AYIKTNPPPKVTLDIGATFVITCETVGVPTPLVSWRLNWNHIP--AKCTTTSEDGVGTLTCPDIQ 67 (67)
Q Consensus 5 P~~~~~~~~~~~~~~g~~~~l~C~a~G~P~P~i~W~~~g~~~~--~~~~~~~~~~~g~L~I~~vq 67 (67)
|.|...+ ..+.+.+|+++.|.|.+.|.|.|.|+|.++|..+. .++.........+|.|.+++
T Consensus 1 P~~~~~~-~~~~v~~G~~~~l~c~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~I~~v~ 64 (90)
T PF07679_consen 1 PVFTKKP-KDVTVKEGESVTLECEVSGNPPPTVTWYKNGRPLTSSQRYQIESDGGSSSLTIKNVT 64 (90)
T ss_dssp EEEEEES-SEEEEETTSEEEEEEEEEESSSSEEEEEETTEEEESSSSEEEEEETTEEEEEESSES
T ss_pred CEEEEec-CCEEEeCCCEEEEEEEEEeCCCCcccccccccceeeeeeeeeecccceeEEccCCCC
Confidence 7888876 56899999999999999999999999999998874 34554444556789998764
No 8
>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs). Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c
Probab=99.47 E-value=2.6e-13 Score=70.90 Aligned_cols=55 Identities=20% Similarity=0.478 Sum_probs=40.7
Q ss_pred EEeCCCCCEEEcCCCcEEEEeEecccCCC-EEEEEECCccCCCceeeeeecCCeEEEEccC
Q psy6536 7 IKTNPPPKVTLDIGATFVITCETVGVPTP-LVSWRLNWNHIPAKCTTTSEDGVGTLTCPDI 66 (67)
Q Consensus 7 ~~~~~~~~~~~~~g~~~~l~C~a~G~P~P-~i~W~~~g~~~~~~~~~~~~~~~g~L~I~~v 66 (67)
|++.|. ++.+.+|+++.|.|.|.|.|.| .|+|.|+|..+..... ...+.|.|.++
T Consensus 1 f~~~P~-~~~v~~G~~v~l~C~a~G~P~P~~I~W~k~g~~l~~~~~----~~~s~L~i~~~ 56 (81)
T cd05749 1 FTVEPE-DLSVTANTPFNLTCQAVGPPEPVEILWWQGGSPLGDPPA----PSPSVLNVPGL 56 (81)
T ss_pred CcCCCC-ceEEcCCCCEEEEEEeeeecCCeEEEEEECCEECCCCCC----CCCCEEEEccc
Confidence 455554 5789999999999999999999 7999999998753111 12245666553
No 9
>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2. Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.47 E-value=4.9e-13 Score=71.15 Aligned_cols=61 Identities=15% Similarity=0.292 Sum_probs=42.4
Q ss_pred CCeEEeCCCCCEEEcCC---CcEEEEeEecccCCCEEEEEECCccCCCc-eeeeeecCCeEEEEccC
Q psy6536 4 PAYIKTNPPPKVTLDIG---ATFVITCETVGVPTPLVSWRLNWNHIPAK-CTTTSEDGVGTLTCPDI 66 (67)
Q Consensus 4 ~P~~~~~~~~~~~~~~g---~~~~l~C~a~G~P~P~i~W~~~g~~~~~~-~~~~~~~~~g~L~I~~v 66 (67)
.|.|..+|. .+.+.+| +++.|.|.|.|+|.|.|+|+++|..+... ...... ..|+|.|.++
T Consensus 1 ~P~f~~~P~-~~~~~~~~~g~~v~l~C~a~g~P~p~i~W~~~g~~l~~~~~~~~~~-~~g~L~I~~~ 65 (94)
T cd05850 1 GPVFEEQPS-SLLFPEGSPEEKVTLGCRARASPPATYRWKMNGTEIKFAPESRYTL-VAGNLVINNP 65 (94)
T ss_pred CCeeEECCC-CEEecCCCCCCeEEEEeEceeCCCCEEEEEECCEECccCCCceEEE-ECCeEEEccC
Confidence 378888874 4555555 57999999999999999999999887421 111111 1367777653
No 10
>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1. Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.47 E-value=6.1e-13 Score=70.86 Aligned_cols=60 Identities=17% Similarity=0.226 Sum_probs=43.1
Q ss_pred CCeEEeCCCCCEEEcC---CCcEEEEeEecccCCCEEEEEECCccCCC-ceeeeeecCCeEEEEccC
Q psy6536 4 PAYIKTNPPPKVTLDI---GATFVITCETVGVPTPLVSWRLNWNHIPA-KCTTTSEDGVGTLTCPDI 66 (67)
Q Consensus 4 ~P~~~~~~~~~~~~~~---g~~~~l~C~a~G~P~P~i~W~~~g~~~~~-~~~~~~~~~~g~L~I~~v 66 (67)
+|.|.++|.+ ..+.+ |+.+.|.|.|.|+|.|.|+|.|++..+.. ..... . ..|.|.|.++
T Consensus 1 ~P~f~~~P~~-~~~~~~~~~~~v~l~C~a~G~P~P~i~W~k~~~~i~~~~~~~~-~-~~g~L~I~~~ 64 (93)
T cd05849 1 GPVFEEQPID-TIYPEESTEGKVSVNCRARANPFPIYKWRKNNLDIDLTNDRYS-M-VGGNLVINNP 64 (93)
T ss_pred CCEEEECCCC-EEecCCccCCeEEEeCcCccCCCCEEEEEECCEEccCCCCeEE-E-ECCEEEECcC
Confidence 5889988754 44544 34799999999999999999999988742 11111 1 1368888765
No 11
>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the
Probab=99.46 E-value=6.8e-13 Score=70.27 Aligned_cols=64 Identities=19% Similarity=0.438 Sum_probs=45.6
Q ss_pred CCeEEeCC-CCCEEEcCCCcEEEEeEecccCCCEEEEEECCccCCCc-eeeeeecCCeEEEEccCC
Q psy6536 4 PAYIKTNP-PPKVTLDIGATFVITCETVGVPTPLVSWRLNWNHIPAK-CTTTSEDGVGTLTCPDIQ 67 (67)
Q Consensus 4 ~P~~~~~~-~~~~~~~~g~~~~l~C~a~G~P~P~i~W~~~g~~~~~~-~~~~~~~~~g~L~I~~vq 67 (67)
||.|...+ ..+..+..|+++.|.|.+.|.|.|.|.|.++|..+... .........++|+|.+++
T Consensus 1 pp~i~~~~~~~~~~~~~G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~~~~L~I~~v~ 66 (95)
T cd05730 1 PPTIRARQSEVNATANLGQSVTLACDADGFPEPTMTWTKDGEPIESGEEKYSFNEDGSEMTILDVD 66 (95)
T ss_pred CCccccCCcccceEEeCCCCEEEEEeccEeCCCEEEEEECCEECcCCCCEEEEeCCCCEEEECCCC
Confidence 56666543 23457889999999999999999999999999887532 111112233478888764
No 12
>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.
Probab=99.46 E-value=8.6e-13 Score=69.77 Aligned_cols=61 Identities=28% Similarity=0.413 Sum_probs=45.3
Q ss_pred EEeCCCCCEEEcCCCcEEEEeEecccCCCEEEEEECCccCCC--ceeeeee-cCCeEEEEccCC
Q psy6536 7 IKTNPPPKVTLDIGATFVITCETVGVPTPLVSWRLNWNHIPA--KCTTTSE-DGVGTLTCPDIQ 67 (67)
Q Consensus 7 ~~~~~~~~~~~~~g~~~~l~C~a~G~P~P~i~W~~~g~~~~~--~~~~~~~-~~~g~L~I~~vq 67 (67)
++...++.+.+.+|+++.|.|.+.|.|.|.|.|.|+|..+.. ++..... ....+|.|.+++
T Consensus 3 ~~~~lp~~v~v~~G~~v~L~C~v~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~L~I~~v~ 66 (92)
T cd05737 3 VVGGLPDVVTIMEGKTLNLTCTVFGDPDPEVSWLKNDQALALSDHYNVKVEQGKYASLTIKGVS 66 (92)
T ss_pred eeccCCceEEEeCCCcEEEEEEEEecCCCeEEEEECCEECccCCCEEEEEcCCCEEEEEEccCC
Confidence 344445667899999999999999999999999999988742 3333222 223479998874
No 13
>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.46 E-value=8.1e-13 Score=70.57 Aligned_cols=63 Identities=16% Similarity=0.324 Sum_probs=45.2
Q ss_pred cCCeEEeCCCCCEEEcCCCcEEEEeEecccCCCEEEEEEC--CccCC-------CceeeeeecCCeEEEEccCC
Q psy6536 3 SPAYIKTNPPPKVTLDIGATFVITCETVGVPTPLVSWRLN--WNHIP-------AKCTTTSEDGVGTLTCPDIQ 67 (67)
Q Consensus 3 ~~P~~~~~~~~~~~~~~g~~~~l~C~a~G~P~P~i~W~~~--g~~~~-------~~~~~~~~~~~g~L~I~~vq 67 (67)
++|.|... .+..+.+|+++.|.|.|.|.|.|.|+|.++ +..+. .++......+.++|+|.+++
T Consensus 1 ~~p~i~~~--~~~~~~~G~~v~l~C~~~G~P~p~i~W~k~~~g~~~~~~~~~~~~r~~v~~~~~~~~L~I~~v~ 72 (98)
T cd05870 1 VQPHIIQL--KNETTVENGAATLSCKAEGEPIPEITWKRASDGHTFSEGDKSPDGRIEVKGQHGESSLHIKDVK 72 (98)
T ss_pred CCCEEEee--ccEEEcCCCcEEEEEecccCCCCeEEEEECCCCceeccCCcCcCceEEEeecCCeeEEEEeeCC
Confidence 47888763 357899999999999999999999999995 33332 13332222234689998875
No 14
>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins. Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res
Probab=99.46 E-value=6.3e-13 Score=70.09 Aligned_cols=43 Identities=26% Similarity=0.575 Sum_probs=38.8
Q ss_pred CCeEEeCCCCCEEEcCCCcEEEEeEecccCCCEEEEEECCccCC
Q psy6536 4 PAYIKTNPPPKVTLDIGATFVITCETVGVPTPLVSWRLNWNHIP 47 (67)
Q Consensus 4 ~P~~~~~~~~~~~~~~g~~~~l~C~a~G~P~P~i~W~~~g~~~~ 47 (67)
||.|.+.|. +..+.+|+++.|.|.+.|.|.|.|.|+|+|..+.
T Consensus 1 ~P~i~~~p~-~~~v~~G~~~~l~C~~~g~P~p~i~W~k~g~~l~ 43 (100)
T cd07693 1 PPRIVEHPS-DLIVSKGDPATLNCKAEGRPTPTIQWLKNGQPLE 43 (100)
T ss_pred CCeEEecCc-eeEEcCCCeEEEEeeCCcCCCCEEEEEECCEECc
Confidence 689998874 5789999999999999999999999999998774
No 15
>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr
Probab=99.45 E-value=1.1e-12 Score=69.87 Aligned_cols=64 Identities=25% Similarity=0.443 Sum_probs=45.0
Q ss_pred cCCeEEeCCCCCEEEcCCCcEEEEeEecccCCCEEEEEECCccCCC-------ceeeeeecCCeEEEEccCC
Q psy6536 3 SPAYIKTNPPPKVTLDIGATFVITCETVGVPTPLVSWRLNWNHIPA-------KCTTTSEDGVGTLTCPDIQ 67 (67)
Q Consensus 3 ~~P~~~~~~~~~~~~~~g~~~~l~C~a~G~P~P~i~W~~~g~~~~~-------~~~~~~~~~~g~L~I~~vq 67 (67)
+.|.|...+. ...+..|+++.|.|.|.|.|.|.|+|.+++..+.. ++........++|.|++++
T Consensus 1 ~~p~i~~~~~-~~~~~~g~~v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~I~~v~ 71 (97)
T cd05869 1 AKPKITYVEN-QTAMELEEQITLTCEASGDPIPSITWRTSTRNISSEEKTLDGHIVVRSHARVSSLTLKYIQ 71 (97)
T ss_pred CCceEEEccC-ceEEEcCCCEEEEEEeeEeCCCEEEEEECCccccCCccccCccEEEEcCccEEEEEEecCc
Confidence 4688887654 34556689999999999999999999998876632 1211111223678888764
No 16
>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.
Probab=99.44 E-value=8.6e-13 Score=69.31 Aligned_cols=54 Identities=13% Similarity=0.299 Sum_probs=42.6
Q ss_pred CEEEcCCCcEEEEeEecccCCCEEEEEECCccCCC---ceeeeeecCCeEEEEccCC
Q psy6536 14 KVTLDIGATFVITCETVGVPTPLVSWRLNWNHIPA---KCTTTSEDGVGTLTCPDIQ 67 (67)
Q Consensus 14 ~~~~~~g~~~~l~C~a~G~P~P~i~W~~~g~~~~~---~~~~~~~~~~g~L~I~~vq 67 (67)
.+.+.+|+.+.|.|.+.|.|.|.|+|.+++..+.. ++........++|.|++++
T Consensus 4 ~~~v~~G~~v~l~c~~~G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~~~~L~I~~~~ 60 (86)
T cd05894 4 TIVVVAGNKLRLDVPISGEPAPTVTWSRGDKAFTETEGRVRVESYKDLSSFVIEGAE 60 (86)
T ss_pred EEEEEcCCEEEEEeeEeecCCCeEEEEECCEECccCCCeEEEEEcCCeEEEEECCCc
Confidence 46788999999999999999999999999998842 3433333334689998874
No 17
>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin. Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.44 E-value=4.3e-13 Score=68.37 Aligned_cols=48 Identities=23% Similarity=0.435 Sum_probs=36.8
Q ss_pred CCCcEEEEeEecccCCCEEEEEECCccCCCceeeeeecCCeEEEEccCC
Q psy6536 19 IGATFVITCETVGVPTPLVSWRLNWNHIPAKCTTTSEDGVGTLTCPDIQ 67 (67)
Q Consensus 19 ~g~~~~l~C~a~G~P~P~i~W~~~g~~~~~~~~~~~~~~~g~L~I~~vq 67 (67)
+|+++.|.|.|.|.|.|.|+|.|+|..+....... ....|+|.|.+++
T Consensus 1 eG~~v~l~C~~~g~P~p~i~W~k~g~~~~~~~~~~-~~~~~~L~I~~v~ 48 (74)
T cd05745 1 EGQTVDFLCEAQGYPQPVIAWTKGGSQLSVDRRHL-VLSSGTLRISRVA 48 (74)
T ss_pred CCCeEEEEeECCEecCCEEEEEECCEECCCCCCeE-EccCCeEEEeeCC
Confidence 58999999999999999999999998875321111 1234789998875
No 18
>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=99.44 E-value=9.4e-13 Score=68.78 Aligned_cols=58 Identities=19% Similarity=0.343 Sum_probs=44.1
Q ss_pred EEeCCCCCEEEcCCCcEEEEeEecccCCCEEEEEECCccCCCceeeeeecCCeEEEEccCC
Q psy6536 7 IKTNPPPKVTLDIGATFVITCETVGVPTPLVSWRLNWNHIPAKCTTTSEDGVGTLTCPDIQ 67 (67)
Q Consensus 7 ~~~~~~~~~~~~~g~~~~l~C~a~G~P~P~i~W~~~g~~~~~~~~~~~~~~~g~L~I~~vq 67 (67)
|+..| .+..+.+|+++.|.|.|.|.|.|.+.|.++|..+........ ..+.|.|.+++
T Consensus 2 ~~~~p-~~~~~~~G~~~~l~C~~~g~p~p~v~W~k~g~~~~~~~~~~~--~~~~L~i~~~~ 59 (85)
T cd05728 2 WLKVI-SDTEADIGSSLRWECKASGNPRPAYRWLKNGQPLASENRIEV--EAGDLRITKLS 59 (85)
T ss_pred ccccC-CccEEcCCCcEEEEEEeeEeCCCEEEEEECCEECCCCCeEEE--eCCEEEEeeCC
Confidence 55555 456899999999999999999999999999998854211111 23678888764
No 19
>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.
Probab=99.43 E-value=8.9e-13 Score=67.85 Aligned_cols=48 Identities=52% Similarity=1.066 Sum_probs=38.3
Q ss_pred CCcEEEEeEecccCCCEEEEEECCccCCC--ceeeeeecCCeEEEEccCC
Q psy6536 20 GATFVITCETVGVPTPLVSWRLNWNHIPA--KCTTTSEDGVGTLTCPDIQ 67 (67)
Q Consensus 20 g~~~~l~C~a~G~P~P~i~W~~~g~~~~~--~~~~~~~~~~g~L~I~~vq 67 (67)
|+++.|.|.|.|.|.|.|.|.+++..+.+ ++......+.++|.|++++
T Consensus 1 G~~v~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~ 50 (78)
T cd05743 1 GETVEFTCVATGVPTPIINWRLNWGHVPDSARVSITSEGGYGTLTIRDVK 50 (78)
T ss_pred CCEEEEEEEEEEecCCEEEEEECCeECCCCCCEEEEECCCEEEEEECCCC
Confidence 68899999999999999999999988753 4443344445789999874
No 20
>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins. Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole
Probab=99.40 E-value=2.6e-12 Score=67.91 Aligned_cols=63 Identities=24% Similarity=0.337 Sum_probs=45.5
Q ss_pred cCCeEEeCCCCCEEEcCCCcEEEEeEecccCCCEEEEEECCccCCC-------ceeeeeecCCeEEEEccCC
Q psy6536 3 SPAYIKTNPPPKVTLDIGATFVITCETVGVPTPLVSWRLNWNHIPA-------KCTTTSEDGVGTLTCPDIQ 67 (67)
Q Consensus 3 ~~P~~~~~~~~~~~~~~g~~~~l~C~a~G~P~P~i~W~~~g~~~~~-------~~~~~~~~~~g~L~I~~vq 67 (67)
++|.|... . +..+.+|+++.|.|.|.|.|.|.|.|.+++..+.. ++........++|+|++++
T Consensus 1 ~~P~i~~~-~-~~~~~~g~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~ 70 (96)
T cd05732 1 VQPKITYL-E-NQTAVELEQITLTCEAEGDPIPEITWRRATRNFSEGDKSLDGRIVVRGHARVSSLTLKDVQ 70 (96)
T ss_pred CCccceec-C-ceeEecCCcEEEEEEEeEcCCCcEEEEECCcccCCCCccccceEEEeCCccEEEEEECcCC
Confidence 46888643 2 46788999999999999999999999999866532 1221112233579998874
No 21
>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).
Probab=99.40 E-value=1.3e-12 Score=66.23 Aligned_cols=45 Identities=27% Similarity=0.507 Sum_probs=34.1
Q ss_pred CCcEEEEeEecccCCCEEEEEECCccCCCceeeeeecCCeEEEEccC
Q psy6536 20 GATFVITCETVGVPTPLVSWRLNWNHIPAKCTTTSEDGVGTLTCPDI 66 (67)
Q Consensus 20 g~~~~l~C~a~G~P~P~i~W~~~g~~~~~~~~~~~~~~~g~L~I~~v 66 (67)
|+++.|.|.|.|.|.|.|+|.|+|..+...... ..+++.|.|.++
T Consensus 1 G~~v~L~C~a~G~P~P~v~W~k~g~~l~~~~~~--~~~~~~L~i~~~ 45 (69)
T cd05739 1 GGSVNLTCVAVGAPMPYVKWMKGGEELTKEDEM--PVGRNVLELTNI 45 (69)
T ss_pred CCeEEEEEEeeecCCCEEEEEECCEECCCccce--ecCccEEEEecc
Confidence 678999999999999999999999887532211 123356777765
No 22
>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.38 E-value=2e-12 Score=66.21 Aligned_cols=47 Identities=30% Similarity=0.570 Sum_probs=35.9
Q ss_pred CCcEEEEeEecccCCCEEEEEECCccCCCc--eeeeeecCCeEEEEccCC
Q psy6536 20 GATFVITCETVGVPTPLVSWRLNWNHIPAK--CTTTSEDGVGTLTCPDIQ 67 (67)
Q Consensus 20 g~~~~l~C~a~G~P~P~i~W~~~g~~~~~~--~~~~~~~~~g~L~I~~vq 67 (67)
|+++.|.|.+.|.|.|.|+|.++|..+... .... ....|+|.|.+++
T Consensus 1 G~~v~l~C~~~G~P~p~i~W~k~g~~i~~~~~~~~~-~~~~~~L~I~~~~ 49 (76)
T cd05867 1 GETARLDCQVEGIPTPNITWSINGAPIEGTDPDPRR-HVSSGALILTDVQ 49 (76)
T ss_pred CCeEEEEEEeeEeCCCeEEEEECCEECCCCCCCceE-EeeCCEEEECCCC
Confidence 788999999999999999999999887531 1111 1234789998875
No 23
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=99.38 E-value=1.9e-12 Score=69.59 Aligned_cols=64 Identities=13% Similarity=0.131 Sum_probs=46.9
Q ss_pred CCeEEeCCCCCEEEcCCCcEEEEeE-ecccCCCEEEEEECCccCCCceeeeeecCCeEEEEccCC
Q psy6536 4 PAYIKTNPPPKVTLDIGATFVITCE-TVGVPTPLVSWRLNWNHIPAKCTTTSEDGVGTLTCPDIQ 67 (67)
Q Consensus 4 ~P~~~~~~~~~~~~~~g~~~~l~C~-a~G~P~P~i~W~~~g~~~~~~~~~~~~~~~g~L~I~~vq 67 (67)
.|.|.....+.+.+.+|+.+.|.|. +.|.|.|.|.|.+++..+-...........|+|.|+||+
T Consensus 2 ~~~~~~~~~~~v~V~eG~~~~L~C~pP~g~P~P~i~W~~~~~~~i~~~~Ri~~~~~GnL~fs~v~ 66 (95)
T cd05845 2 TPKWPKEKIRPVEVEEGDSVVLPCNPPKSAVPLRIYWMNSDLLHITQDERVSMGQNGNLYFANVE 66 (95)
T ss_pred CCcCCccccceeEEecCCCEEEEecCCCCCCCCEEEEECCCCccccccccEEECCCceEEEEEEe
Confidence 4667665556689999999999997 799999999999877543211112223345899999874
No 24
>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=99.35 E-value=4.2e-12 Score=65.17 Aligned_cols=47 Identities=23% Similarity=0.361 Sum_probs=34.8
Q ss_pred CCcEEEEeEecccCCCEEEEEECCccCCC--ceeeeeecCCeEEEEccCC
Q psy6536 20 GATFVITCETVGVPTPLVSWRLNWNHIPA--KCTTTSEDGVGTLTCPDIQ 67 (67)
Q Consensus 20 g~~~~l~C~a~G~P~P~i~W~~~g~~~~~--~~~~~~~~~~g~L~I~~vq 67 (67)
|+++.|.|.|.|+|.|.|+|.|+|..+.. ....... +.++|.|.+++
T Consensus 1 g~~~~l~C~a~G~P~P~i~W~k~g~~i~~~~~~~~~~~-~~~~l~i~~v~ 49 (76)
T cd05868 1 GEDGTLICRANGNPKPSISWLTNGVPIEIAPTDPSRKV-DGDTIIFSKVQ 49 (76)
T ss_pred CCCEEEEEEeeEeCCCeEEEEECCEEccccCCCceEEe-cCCEEEECCCC
Confidence 68899999999999999999999988742 1111112 23578888764
No 25
>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=99.35 E-value=4.5e-12 Score=64.38 Aligned_cols=48 Identities=33% Similarity=0.541 Sum_probs=36.4
Q ss_pred CCcEEEEeEecccCCCEEEEEECCccCCCce-eeeeecCCeEEEEccCC
Q psy6536 20 GATFVITCETVGVPTPLVSWRLNWNHIPAKC-TTTSEDGVGTLTCPDIQ 67 (67)
Q Consensus 20 g~~~~l~C~a~G~P~P~i~W~~~g~~~~~~~-~~~~~~~~g~L~I~~vq 67 (67)
|+++.|.|.+.|.|.|.|+|.++|..+.... ........+.|+|.+++
T Consensus 1 G~~~~l~C~~~g~P~p~i~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~ 49 (76)
T cd04978 1 GETGRLDCEAEGIPQPTITWRLNGVPIEELPPDPRRRVDGGTLILSNVQ 49 (76)
T ss_pred CCeEEEEEEceeeCCCEEEEEECCEECCCCCCcceEEccCCEEEECCCC
Confidence 7889999999999999999999998875311 11122345789998874
No 26
>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.34 E-value=6.9e-12 Score=66.49 Aligned_cols=40 Identities=20% Similarity=0.524 Sum_probs=35.1
Q ss_pred EEeCCCCCEEEcCCCcEEEEeEecccCCCEEEEEECCccCC
Q psy6536 7 IKTNPPPKVTLDIGATFVITCETVGVPTPLVSWRLNWNHIP 47 (67)
Q Consensus 7 ~~~~~~~~~~~~~g~~~~l~C~a~G~P~P~i~W~~~g~~~~ 47 (67)
|+..|. ...+.+|+++.|.|.|.|.|.|.|.|.|+|..+.
T Consensus 2 f~~~P~-~~~~~~g~~v~l~C~v~g~P~p~i~W~k~g~~l~ 41 (95)
T cd05722 2 FLSEPS-DIVAVRGGPVVLNCSAEGEPPPKIEWKKDGVLLN 41 (95)
T ss_pred cEECCC-CeEEcCCCCEEEeeecccCCCCEEEEEECCeECc
Confidence 566664 4678899999999999999999999999998875
No 27
>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.34 E-value=5.1e-12 Score=64.66 Aligned_cols=45 Identities=22% Similarity=0.438 Sum_probs=36.0
Q ss_pred CCcEEEEeEecccCCCEEEEEECCccCCC--ceeeeeecCCeEEEEccCC
Q psy6536 20 GATFVITCETVGVPTPLVSWRLNWNHIPA--KCTTTSEDGVGTLTCPDIQ 67 (67)
Q Consensus 20 g~~~~l~C~a~G~P~P~i~W~~~g~~~~~--~~~~~~~~~~g~L~I~~vq 67 (67)
|+++.|.|.+.|.|.|.|+|.|++..+.. ++.+ ...|+|.|.+++
T Consensus 1 G~~~~l~C~~~g~P~p~v~W~k~~~~l~~~~r~~~---~~~g~L~I~~v~ 47 (73)
T cd05852 1 GGRVIIECKPKAAPKPKFSWSKGTELLVNNSRISI---WDDGSLEILNIT 47 (73)
T ss_pred CCeEEEEEecceeCCCEEEEEeCCEecccCCCEEE---cCCCEEEECcCC
Confidence 68899999999999999999999987642 3332 235789999875
No 28
>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin. Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.
Probab=99.33 E-value=7.1e-12 Score=64.50 Aligned_cols=45 Identities=18% Similarity=0.453 Sum_probs=33.2
Q ss_pred EEEEeEecccCCCEEEEEECCccCC---Cceeeeee-cCCeEEEEccCC
Q psy6536 23 FVITCETVGVPTPLVSWRLNWNHIP---AKCTTTSE-DGVGTLTCPDIQ 67 (67)
Q Consensus 23 ~~l~C~a~G~P~P~i~W~~~g~~~~---~~~~~~~~-~~~g~L~I~~vq 67 (67)
+.|.|.+.|.|.|.|+|+|+|..+. +++.+... .+..+|.|++++
T Consensus 1 v~l~C~v~G~P~P~i~W~k~~~~i~~~~~r~~~~~~~~g~~~L~I~~~~ 49 (75)
T cd05892 1 VKLECQISAIPPPKIFWKRNNEMVQYNTDRISLYQDNSGRVTLLIKNVN 49 (75)
T ss_pred CEEEEEEEecCCCeEEEEECCEECcCCCCeEEEEEcCCCcEEEEECCCC
Confidence 4799999999999999999998874 23333222 122379999875
No 29
>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the
Probab=99.33 E-value=1.5e-11 Score=65.21 Aligned_cols=60 Identities=18% Similarity=0.271 Sum_probs=44.6
Q ss_pred CeEEeC-CCCCEEEcCCCcEEEEeEecccCCCEEEEEECCccCCC-ceeeeeecCCeEEEEccCC
Q psy6536 5 AYIKTN-PPPKVTLDIGATFVITCETVGVPTPLVSWRLNWNHIPA-KCTTTSEDGVGTLTCPDIQ 67 (67)
Q Consensus 5 P~~~~~-~~~~~~~~~g~~~~l~C~a~G~P~P~i~W~~~g~~~~~-~~~~~~~~~~g~L~I~~vq 67 (67)
|.|... ...+..+.+|+++.|.|.|.|. .|.|.|++++..+.. +... ..+.++|.|.+++
T Consensus 2 p~~~~~~~~~~~~v~~g~~v~l~C~a~g~-~p~i~W~kng~~l~~~~~~~--~~~~~~L~I~~v~ 63 (91)
T cd05740 2 PVINSNNSVGNQPPEDNQPVTLTCEAEGQ-ATYIWWVNNGSLLVPPRLQL--SNDNRTLTFNNVT 63 (91)
T ss_pred CEeecccccCccccccCCcEEEEEEeCCC-CCEEEEEECCEECCCCCEEE--eCCCCEEEECcCC
Confidence 666432 2345688999999999999999 999999999988743 3222 2234689998874
No 30
>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins. Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=99.33 E-value=2.4e-11 Score=64.81 Aligned_cols=63 Identities=21% Similarity=0.373 Sum_probs=45.3
Q ss_pred cCCeEEeCCCCCEEEcCCCcEEEEeEecccCCC-EEEEEECCccCCC----ceeeeee----cCCeEEEEccCC
Q psy6536 3 SPAYIKTNPPPKVTLDIGATFVITCETVGVPTP-LVSWRLNWNHIPA----KCTTTSE----DGVGTLTCPDIQ 67 (67)
Q Consensus 3 ~~P~~~~~~~~~~~~~~g~~~~l~C~a~G~P~P-~i~W~~~g~~~~~----~~~~~~~----~~~g~L~I~~vq 67 (67)
.||.|.. +. ...+.+|+++.|.|.|.|.|.| .|.|.+++..+.. ++..... ...++|.|.+++
T Consensus 1 ~pp~i~~-~~-~~~~~~G~~v~L~C~~~g~P~P~~v~W~~~~~~i~~~~~~r~~i~~~~~~~~~~s~L~I~~v~ 72 (98)
T cd05758 1 GPPIITS-EA-TQYAILGDKGRVECFIFSTPPPDRIVWTWKENELESGSSGRYTVETDPSPGGVLSTLTISNTQ 72 (98)
T ss_pred CCCeEcC-CC-cEEEeCCCcEEEEEEEcccCCCCEeEEEECCEEccCCCCCCEEEEEecCCCceEEEEEECCcc
Confidence 4777754 43 4678999999999999999999 6999999987742 3333221 011479998874
No 31
>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins. Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes
Probab=99.32 E-value=1.6e-11 Score=66.45 Aligned_cols=56 Identities=18% Similarity=0.366 Sum_probs=41.4
Q ss_pred CCCEEEcCCCcEEEEeEecc-cCCCEEEEEECCccCCC--ceeeeeec-----CCeEEEEccCC
Q psy6536 12 PPKVTLDIGATFVITCETVG-VPTPLVSWRLNWNHIPA--KCTTTSED-----GVGTLTCPDIQ 67 (67)
Q Consensus 12 ~~~~~~~~g~~~~l~C~a~G-~P~P~i~W~~~g~~~~~--~~~~~~~~-----~~g~L~I~~vq 67 (67)
...+.+.+|+++.|.|.+.| .|.|.+.|.|+|..+.+ .......+ ..++|.|.+++
T Consensus 10 ~~~~~v~~G~~v~L~c~v~g~~P~p~v~W~Kdg~~i~~~~~~~~~~~~~~~~~~~~~L~i~~v~ 73 (101)
T cd04975 10 NTTIFVNLGENLNLVVEVEAYPPPPHINWTYDNRTLTNKLTEIVTSENESEYRYVSELKLVRLK 73 (101)
T ss_pred CceEEEECCCCEEEEEEEEecCCCCccEEEeCCeeCCCCcceeEEEeccCcceEEEEEEEeecC
Confidence 34578899999999999999 99999999999998864 21111111 12578887763
No 32
>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago
Probab=99.32 E-value=1.5e-11 Score=63.65 Aligned_cols=55 Identities=22% Similarity=0.405 Sum_probs=40.5
Q ss_pred CCEEEcCCCcEEEEeEe-cccCCCEEEEEECCccCCCceeeeeecCCeEEEEccCC
Q psy6536 13 PKVTLDIGATFVITCET-VGVPTPLVSWRLNWNHIPAKCTTTSEDGVGTLTCPDIQ 67 (67)
Q Consensus 13 ~~~~~~~g~~~~l~C~a-~G~P~P~i~W~~~g~~~~~~~~~~~~~~~g~L~I~~vq 67 (67)
....+.+|+++.|.|.+ .|.|.|.|.|.++|..+............|+|.|.+++
T Consensus 4 ~~~~~~~G~~v~l~C~~~~g~p~p~i~W~k~g~~~~~~~~~~~~~~~~~L~I~~~~ 59 (86)
T cd05724 4 SDTQVAVGEMAVLECSPPRGHPEPTVSWRKDGQPLNLDNERVRIVDDGNLLIAEAR 59 (86)
T ss_pred ccEEEeCCCCEEEEEECCCCCCCCEEEEEECCEECCCCCCCEEEccCCEEEEeECC
Confidence 45688899999999998 79999999999999877531111111224688888764
No 33
>cd04967 Ig1_Contactin First Ig domain of contactin. Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata
Probab=99.31 E-value=2e-11 Score=64.31 Aligned_cols=59 Identities=17% Similarity=0.313 Sum_probs=40.9
Q ss_pred CeEEeCCCCCEEEcC---CCcEEEEeEecccCCCEEEEEECCccCCC--ceeeeeecCCeEEEEccC
Q psy6536 5 AYIKTNPPPKVTLDI---GATFVITCETVGVPTPLVSWRLNWNHIPA--KCTTTSEDGVGTLTCPDI 66 (67)
Q Consensus 5 P~~~~~~~~~~~~~~---g~~~~l~C~a~G~P~P~i~W~~~g~~~~~--~~~~~~~~~~g~L~I~~v 66 (67)
|.|...|.+ ..+.+ |+++.|.|.+.|+|.|.|+|++++..+.. ..... ...|.|.|.++
T Consensus 2 P~f~~~p~~-~~~~~~~~~~~~~l~C~~~g~p~p~i~W~k~~~~l~~~~~~~~~--~~~~~L~i~~~ 65 (91)
T cd04967 2 PVFEEQPDD-TIFPEESDEGKVSLNCRARGSPPPTYRWLMNGTEIDDEPDSRYS--LVGGNLVISNP 65 (91)
T ss_pred CeeEeCCCC-EEccCCCCCCEEEEEEeeeEcCCCEEEEEECCEECCCCCCCCEE--EECCEEEEecC
Confidence 788888754 44433 45799999999999999999999988732 11111 12356777654
No 34
>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin. Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p
Probab=99.29 E-value=3.1e-11 Score=65.85 Aligned_cols=66 Identities=15% Similarity=0.254 Sum_probs=44.9
Q ss_pred CCcCCeEEeCCCCCEEEc---CCCcEEEEeEecccCCCEEEEEECCccCCC---ceeeee-ec---CCeEEEEccC
Q psy6536 1 MTSPAYIKTNPPPKVTLD---IGATFVITCETVGVPTPLVSWRLNWNHIPA---KCTTTS-ED---GVGTLTCPDI 66 (67)
Q Consensus 1 ~~~~P~~~~~~~~~~~~~---~g~~~~l~C~a~G~P~P~i~W~~~g~~~~~---~~~~~~-~~---~~g~L~I~~v 66 (67)
+..+|.|...|.....+. .|.++.|.|.|.|.|.|.++|.++|..+.. ++.... .. ..++|+|.++
T Consensus 1 v~~~P~~~~~~~~~~~~~~~~~g~~v~L~C~a~G~P~p~i~W~k~g~~l~~~~~r~~~~~~~~~~~~~s~L~I~~v 76 (109)
T cd05773 1 VRFAPDLQKGPQLRKVASRGDGSSDANLVCQAQGVPRVQFRWAKNGVPLDLGNPRYEETTEHTGTVHTSILTIINV 76 (109)
T ss_pred CccccccccCCceEEEEEecCCCCEEEEEEECcccCCCEEEEEECCEECCCCCCeEEEEeeccCccceeEEEECcC
Confidence 356888877664332332 457899999999999999999999988742 222111 11 1357898875
No 35
>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.
Probab=99.29 E-value=1.8e-11 Score=62.62 Aligned_cols=53 Identities=17% Similarity=0.370 Sum_probs=38.5
Q ss_pred EEEcCCCcEEEEeEecccCCCEEEEEECCccCCCceeeeeecCCeEEEEccCC
Q psy6536 15 VTLDIGATFVITCETVGVPTPLVSWRLNWNHIPAKCTTTSEDGVGTLTCPDIQ 67 (67)
Q Consensus 15 ~~~~~g~~~~l~C~a~G~P~P~i~W~~~g~~~~~~~~~~~~~~~g~L~I~~vq 67 (67)
+.+..|+++.|.|.+.|.|.|.++|.++|..+............++|.|.+++
T Consensus 4 ~~~~~G~~v~L~C~~~g~p~p~i~W~k~~~~~~~~~~~~~~~~~~~L~i~~v~ 56 (82)
T cd05856 4 IARPVGSSVRLKCVASGNPRPDITWLKDNKPLTPTEIGESRKKKWTLSLKNLK 56 (82)
T ss_pred eeccCCCeEEEEEEeeEeCCCcEEEEECCcCCcCCccceecCceEEEEEccCC
Confidence 45678999999999999999999999999877421111112233578887764
No 36
>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.
Probab=99.26 E-value=4.4e-11 Score=61.91 Aligned_cols=53 Identities=17% Similarity=0.288 Sum_probs=38.7
Q ss_pred EEEcCCCcEEEEeEecccCCCEEEEEECCccCCC--ceee-eeecCCeEEEEccCC
Q psy6536 15 VTLDIGATFVITCETVGVPTPLVSWRLNWNHIPA--KCTT-TSEDGVGTLTCPDIQ 67 (67)
Q Consensus 15 ~~~~~g~~~~l~C~a~G~P~P~i~W~~~g~~~~~--~~~~-~~~~~~g~L~I~~vq 67 (67)
..+.+|+.+.|.|.|.|.|.|.|+|+|+|..+.. +... ......++|.|.+++
T Consensus 4 ~~v~~G~~~~L~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~l~i~~~~ 59 (85)
T cd05857 4 HAVPAANTVKFRCPAAGNPTPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVV 59 (85)
T ss_pred EEcCCCCEEEEEEEcCCCCCCEEEEEECCEECCCCCceeeeEEeCCceEEEEccCC
Confidence 4578999999999999999999999999988753 1111 112234567777653
No 37
>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.
Probab=99.25 E-value=7.8e-11 Score=63.64 Aligned_cols=55 Identities=18% Similarity=0.170 Sum_probs=40.5
Q ss_pred CCEEEcCCCcEEEEeEecccCCCEEEEEECCccCCCce--eeeee------cCCeEEEEccCC
Q psy6536 13 PKVTLDIGATFVITCETVGVPTPLVSWRLNWNHIPAKC--TTTSE------DGVGTLTCPDIQ 67 (67)
Q Consensus 13 ~~~~~~~g~~~~l~C~a~G~P~P~i~W~~~g~~~~~~~--~~~~~------~~~g~L~I~~vq 67 (67)
....+..|+.+.|.|.+.|.|.|.|.|.|+|..+.+.. ..... ...++|.|.+++
T Consensus 11 ~~~~~~~~~~~~l~~~v~g~P~P~v~W~kdg~~l~~~~~~~~~~~~~~~~~~~~s~L~I~~v~ 73 (101)
T cd05859 11 QLEFANLHEVKEFVVEVEAYPPPQIRWLKDNRTLIENLTEITTSEHNVQETRYVSKLKLIRAK 73 (101)
T ss_pred ceEEEecCCcEEEEEEEEEeCCCceEEEECCEECcCCcceEEeccccccceeeccEEEEeeCC
Confidence 35678899999999999999999999999999985421 11100 113578888764
No 38
>KOG3513|consensus
Probab=99.24 E-value=1.1e-11 Score=86.92 Aligned_cols=64 Identities=25% Similarity=0.483 Sum_probs=51.1
Q ss_pred CcCCeEEeCCCCCEEEcCCCcEEEEeEecccCCCEEEEEECCccCCC--ceeeeeecCCeEEEEccCC
Q psy6536 2 TSPAYIKTNPPPKVTLDIGATFVITCETVGVPTPLVSWRLNWNHIPA--KCTTTSEDGVGTLTCPDIQ 67 (67)
Q Consensus 2 ~~~P~~~~~~~~~~~~~~g~~~~l~C~a~G~P~P~i~W~~~g~~~~~--~~~~~~~~~~g~L~I~~vq 67 (67)
.++|.|++.+ +++.+..|+++.|.|+|.|.|.|.|+|++||.++.. +.... .-..|+|+|+||+
T Consensus 329 ~a~P~w~~~~-~d~~~~~gs~v~~eC~a~g~P~p~v~WlkNg~pl~~~~r~~~~-~i~~g~L~is~v~ 394 (1051)
T KOG3513|consen 329 YAPPYWLQKP-QDTEADTGSNVTLECKASGKPNPTVKWLKNGEPLEPAERDPRY-KIDDGTLIISNVQ 394 (1051)
T ss_pred ecCchhhccc-ceeEecCCCCeEEEEEecCCCCCceEEeeCCeecCccCCCcce-EEeCCEEEEEecc
Confidence 3789999876 457899999999999999999999999999998853 31111 1235899999885
No 39
>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin. Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.
Probab=99.24 E-value=2.4e-11 Score=62.49 Aligned_cols=44 Identities=20% Similarity=0.509 Sum_probs=32.6
Q ss_pred EEEEeEecccCCCEEEEEECCccCCC---ceeeeeecCCe--EEEEccCC
Q psy6536 23 FVITCETVGVPTPLVSWRLNWNHIPA---KCTTTSEDGVG--TLTCPDIQ 67 (67)
Q Consensus 23 ~~l~C~a~G~P~P~i~W~~~g~~~~~---~~~~~~~~~~g--~L~I~~vq 67 (67)
+.|.|.+.|.|.|.|+|.|++..+.. ++... .++.| +|.|.+++
T Consensus 1 v~l~C~v~G~P~P~v~W~k~~~~l~~~~~~~~~~-~~~~~~~~L~I~~v~ 49 (75)
T cd05893 1 VRLECRVSGVPHPQIFWKKENESLTHNTDRVSMH-QDNCGYICLLIQGAT 49 (75)
T ss_pred CEEEEEEeEecCCEEEEEECCEECCCCCCeEEEE-EcCCCEEEEEECCCC
Confidence 47999999999999999999998752 33332 22223 69998874
No 40
>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins. Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-
Probab=99.24 E-value=4.6e-11 Score=60.60 Aligned_cols=46 Identities=15% Similarity=0.329 Sum_probs=35.0
Q ss_pred cEEEEeEecccCCCEEEEEECCccCCC--ceeeeeecCCeEEEEccCC
Q psy6536 22 TFVITCETVGVPTPLVSWRLNWNHIPA--KCTTTSEDGVGTLTCPDIQ 67 (67)
Q Consensus 22 ~~~l~C~a~G~P~P~i~W~~~g~~~~~--~~~~~~~~~~g~L~I~~vq 67 (67)
.+.|.|.+.|.|.|.++|.|+|..+.. ++........++|.|.+++
T Consensus 1 ~~~l~c~~~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~~~ 48 (74)
T cd05748 1 SVRLEVPISGRPTPTVTWSKDGKPLKLSGRVQIETTASSTSLVIKNAE 48 (74)
T ss_pred CEEEEeeEeeeCCCeEEEEECCEEcCCCCeEEEEECCCeEEEEECCCC
Confidence 478999999999999999999998742 3433333345689998864
No 41
>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.
Probab=99.24 E-value=9.2e-11 Score=62.13 Aligned_cols=56 Identities=30% Similarity=0.446 Sum_probs=41.9
Q ss_pred CCCEEEcCCCcEEEEeEecccCCCEEEEEECCccCCC--ceeeeeec-CCeEEEEccCC
Q psy6536 12 PPKVTLDIGATFVITCETVGVPTPLVSWRLNWNHIPA--KCTTTSED-GVGTLTCPDIQ 67 (67)
Q Consensus 12 ~~~~~~~~g~~~~l~C~a~G~P~P~i~W~~~g~~~~~--~~~~~~~~-~~g~L~I~~vq 67 (67)
+..+.+.+|+++.|.|.+.|.|.|.+.|+++|..+.. ++...... ..++|.|.+++
T Consensus 8 p~~v~v~eG~~v~L~C~v~g~P~p~i~W~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~ 66 (92)
T cd05891 8 PDVVTIMEGKTLNLTCTVFGNPDPEVIWFKNDQDIELSEHYSVKLEQGKYASLTIKGVT 66 (92)
T ss_pred CCcEEEcCCCEEEEEEEEEEeCCCeEEEEECCEECCCCCCEEEEEcCCCEEEEEECCCC
Confidence 3567899999999999999999999999999987743 23222122 22478888764
No 42
>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans
Probab=99.22 E-value=1.1e-10 Score=62.63 Aligned_cols=58 Identities=19% Similarity=0.343 Sum_probs=41.1
Q ss_pred eCCCCCEEEcCCCcEEEEeEecccCC-CEEEEEE-CCccCCC---ceeeee-ecCCeEEEEccCC
Q psy6536 9 TNPPPKVTLDIGATFVITCETVGVPT-PLVSWRL-NWNHIPA---KCTTTS-EDGVGTLTCPDIQ 67 (67)
Q Consensus 9 ~~~~~~~~~~~g~~~~l~C~a~G~P~-P~i~W~~-~g~~~~~---~~~~~~-~~~~g~L~I~~vq 67 (67)
..|. ...+.+|+++.|.|.|.|.|. |.|+|.+ +|..+.. ++.... .+..++|+|.+++
T Consensus 5 ~~p~-~~~v~~G~~v~l~C~v~G~P~~p~i~W~~~~g~~l~~~~~r~~v~~~~~~~~~L~I~~v~ 68 (96)
T cd05865 5 IVPS-QGEISVGESKFFLCQVAGEAKDKDISWFSPNGEKLTPNQQRISVVRNDDYSSTLTIYNAN 68 (96)
T ss_pred EeCC-ccEECCCCeEEEEEEEeCCCCCCEEEEECCCCcCccccCCeEEEEeCCCCceEEEEeccC
Confidence 3443 357899999999999999995 7999998 6665532 332221 2234789999875
No 43
>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.
Probab=99.22 E-value=4.4e-11 Score=61.45 Aligned_cols=44 Identities=34% Similarity=0.575 Sum_probs=32.1
Q ss_pred EEEEeEecccCCCEEEEEECCccCCC--ceeeeeecCCeEEEEccC
Q psy6536 23 FVITCETVGVPTPLVSWRLNWNHIPA--KCTTTSEDGVGTLTCPDI 66 (67)
Q Consensus 23 ~~l~C~a~G~P~P~i~W~~~g~~~~~--~~~~~~~~~~g~L~I~~v 66 (67)
+.|.|.|.|+|.|.|+|.|+|..+.. ..........|+|.|.++
T Consensus 1 i~l~C~~~G~P~P~v~W~k~g~~l~~~~~~~~~~~~~~g~L~i~~~ 46 (77)
T cd05733 1 IVIKCEAKGNPPPTFSWTRNGTHFDPEKDPRVTMKPDSGTLVIDNM 46 (77)
T ss_pred CEEEeeCcccCCCeEEEEECCeECCCCCCCCEEEeCCCCEEEEecc
Confidence 47899999999999999999988742 111222334578888765
No 44
>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin. Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.21 E-value=7.4e-11 Score=59.81 Aligned_cols=45 Identities=20% Similarity=0.448 Sum_probs=35.7
Q ss_pred CCcEEEEeEecccCCCEEEEEECCccCCC--ceeeeeecCCeEEEEccCC
Q psy6536 20 GATFVITCETVGVPTPLVSWRLNWNHIPA--KCTTTSEDGVGTLTCPDIQ 67 (67)
Q Consensus 20 g~~~~l~C~a~G~P~P~i~W~~~g~~~~~--~~~~~~~~~~g~L~I~~vq 67 (67)
|+++.|.|.+.|.|.|.++|.+++..+.. +... ...|+|.|.+++
T Consensus 1 G~~v~L~C~~~g~P~p~v~W~k~~~~~~~~~~~~~---~~~~~L~i~~v~ 47 (73)
T cd04969 1 GGDVIIECKPKAAPKPTISWSKGTELLTNSSRICI---WPDGSLEILNVT 47 (73)
T ss_pred CCeEEEEEeeeEcCCCEEEEEECCEEcccCCCEEE---CCCCeEEEccCC
Confidence 68899999999999999999999988742 3322 234689998874
No 45
>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=99.21 E-value=4.8e-11 Score=61.47 Aligned_cols=44 Identities=34% Similarity=0.532 Sum_probs=30.9
Q ss_pred EEEEeEecccCCCEEEEEECCccCC--CceeeeeecCCeEEEEccC
Q psy6536 23 FVITCETVGVPTPLVSWRLNWNHIP--AKCTTTSEDGVGTLTCPDI 66 (67)
Q Consensus 23 ~~l~C~a~G~P~P~i~W~~~g~~~~--~~~~~~~~~~~g~L~I~~v 66 (67)
+.|.|+|.|+|.|.|+|.|+|..+. ...........|+|.|..+
T Consensus 1 ~~l~C~a~G~P~P~i~W~k~g~~l~~~~~~~~~~~~~~g~l~i~~~ 46 (77)
T cd05874 1 IVIQCEAKGKPPPSFSWTRNGTHFDIDKDPKVTMKPNTGTLVINIM 46 (77)
T ss_pred CEEEeeCcccCCCeEEEEECCeECCCcCCCCEEEeCCCceEEEecc
Confidence 4799999999999999999998763 1111112233577877654
No 46
>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.
Probab=99.21 E-value=5.5e-11 Score=61.25 Aligned_cols=42 Identities=26% Similarity=0.477 Sum_probs=31.2
Q ss_pred EEEEeEecccCCCEEEEEECCccCC----CceeeeeecCCeEEEEccC
Q psy6536 23 FVITCETVGVPTPLVSWRLNWNHIP----AKCTTTSEDGVGTLTCPDI 66 (67)
Q Consensus 23 ~~l~C~a~G~P~P~i~W~~~g~~~~----~~~~~~~~~~~g~L~I~~v 66 (67)
+.|.|+|.|+|.|.|+|+|+|..+. .++.. ....|+|.|.++
T Consensus 1 ~~l~C~~~G~P~P~v~W~k~g~~~~~~~~~~~~~--~~~~~~L~i~~~ 46 (77)
T cd05875 1 IIIECEAKGNPVPTFQWTRNGKFFNVAKDPRVSM--RRRSGTLVIDFS 46 (77)
T ss_pred CEEEEeccccCCCEEEEEECCEEccCcCCCcEEE--eCCCceEEEecc
Confidence 4699999999999999999998663 13322 234578888764
No 47
>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.21 E-value=6.4e-11 Score=59.92 Aligned_cols=44 Identities=25% Similarity=0.413 Sum_probs=32.6
Q ss_pred EEEEeEecccCCCEEEEEECCccCCCceeeeeecCCeEEEEccCC
Q psy6536 23 FVITCETVGVPTPLVSWRLNWNHIPAKCTTTSEDGVGTLTCPDIQ 67 (67)
Q Consensus 23 ~~l~C~a~G~P~P~i~W~~~g~~~~~~~~~~~~~~~g~L~I~~vq 67 (67)
+.|.|.|.|.|.|.|+|.|++..+...... .....++|.|++++
T Consensus 1 ~~L~C~~~G~P~P~v~W~k~~~~~~~~~~~-~~~~~~~L~I~~v~ 44 (71)
T cd05876 1 LVLECIAEGLPTPEVHWDRIDGPLSPNRTK-KLNNNKTLQLDNVL 44 (71)
T ss_pred CEEEEEeeEecCCeEEEEECCcCCCCCcee-EEcCCCEEEEcccC
Confidence 469999999999999999999877432111 12345789998874
No 48
>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.
Probab=99.20 E-value=5.2e-11 Score=60.70 Aligned_cols=44 Identities=16% Similarity=0.388 Sum_probs=32.5
Q ss_pred EEEEeEecccCCCEEEEEECCccCC--CceeeeeecCCeEEEEccCC
Q psy6536 23 FVITCETVGVPTPLVSWRLNWNHIP--AKCTTTSEDGVGTLTCPDIQ 67 (67)
Q Consensus 23 ~~l~C~a~G~P~P~i~W~~~g~~~~--~~~~~~~~~~~g~L~I~~vq 67 (67)
+.|.|.+.|.|.|.|+|.|++..+. .... ....+.|+|.|.+++
T Consensus 1 a~l~C~~~G~P~p~v~W~k~~~~~~~~~~~~-~~~~~~g~L~i~~~~ 46 (74)
T cd05738 1 ATMLCAASGNPDPEITWFKDFLPVDTTSNGR-IKQLRSGALQIENSE 46 (74)
T ss_pred CEEEEEEeEecCCEEEEEECCEECccCCCCC-EEEcCCcEEEECCCC
Confidence 4799999999999999999998774 2111 112345789998874
No 49
>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format
Probab=99.20 E-value=1.4e-10 Score=62.15 Aligned_cols=55 Identities=11% Similarity=0.221 Sum_probs=40.8
Q ss_pred CCEEEcCCCcEEEEeEecccCCCEEEEEECCccC----------CCceeeeee-cCCeEEEEccCC
Q psy6536 13 PKVTLDIGATFVITCETVGVPTPLVSWRLNWNHI----------PAKCTTTSE-DGVGTLTCPDIQ 67 (67)
Q Consensus 13 ~~~~~~~g~~~~l~C~a~G~P~P~i~W~~~g~~~----------~~~~~~~~~-~~~g~L~I~~vq 67 (67)
.+..+.+|+++.|.|.+.|.|.|.|.|.++++.+ ..++..... ...++|.|+||+
T Consensus 5 ~~~tv~~G~tv~L~C~v~g~~~~~v~W~k~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~nV~ 70 (95)
T cd05882 5 QDETVAVGGTVTLKCGVKEHDNSSLQWSNTAQQTLYFGEKRALRDNRIQLVKSTPTELIISISNVQ 70 (95)
T ss_pred ccEEEecCCcEEEEEEEeCCCCCeEEEeccCccEEEeCCeEEEeCCeEEEEeCCCceEEEEECCCC
Confidence 4578999999999999999999999999988643 123322211 124689999985
No 50
>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4. Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s
Probab=99.20 E-value=6.3e-11 Score=60.85 Aligned_cols=45 Identities=18% Similarity=0.264 Sum_probs=32.7
Q ss_pred EEEEeEecccCCCEEEEEECCccCCCce-eeeeecCCeEEEEccCC
Q psy6536 23 FVITCETVGVPTPLVSWRLNWNHIPAKC-TTTSEDGVGTLTCPDIQ 67 (67)
Q Consensus 23 ~~l~C~a~G~P~P~i~W~~~g~~~~~~~-~~~~~~~~g~L~I~~vq 67 (67)
+.|.|.+.|.|.|.|+|.|+|..+.... ........++|.|.+++
T Consensus 1 v~L~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~L~I~~~~ 46 (77)
T cd05760 1 VTLRCHIDGHPRPTYQWFRDGTPLSDGQGNYSVSSKERTLTLRSAG 46 (77)
T ss_pred CEEEEEeeecCCCcEEEEECCEECCCCCccEEEeCCCCEEEEeeCC
Confidence 5799999999999999999999884311 11112334689998764
No 51
>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.17 E-value=1.2e-10 Score=58.88 Aligned_cols=43 Identities=23% Similarity=0.410 Sum_probs=31.1
Q ss_pred cEEEEeEecccCCCEEEEEECCccCCC--ceeeeeecCCeEEEEccCC
Q psy6536 22 TFVITCETVGVPTPLVSWRLNWNHIPA--KCTTTSEDGVGTLTCPDIQ 67 (67)
Q Consensus 22 ~~~l~C~a~G~P~P~i~W~~~g~~~~~--~~~~~~~~~~g~L~I~~vq 67 (67)
++.|.|.|.|.|.|.|+|.|+|..+.. ++.. .. .+.|.|.+++
T Consensus 1 ~v~l~C~~~G~P~p~v~W~k~g~~~~~~~~~~~-~~--~~~l~i~~v~ 45 (71)
T cd05723 1 DVIFECEVTGKPTPTVKWVKNGDMVIPSDYFKI-VK--EHNLQVLGLV 45 (71)
T ss_pred CEEEEEEEEEeCCCEEEEEECCeECCCCCCEEE-Ee--cCCEEEEcCC
Confidence 478999999999999999999987742 2222 11 3457776653
No 52
>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.17 E-value=1.4e-10 Score=60.92 Aligned_cols=45 Identities=27% Similarity=0.547 Sum_probs=34.1
Q ss_pred CCcEEEEeEecccCCCEEEEEECCccCC----------CceeeeeecCCeEEEEccCC
Q psy6536 20 GATFVITCETVGVPTPLVSWRLNWNHIP----------AKCTTTSEDGVGTLTCPDIQ 67 (67)
Q Consensus 20 g~~~~l~C~a~G~P~P~i~W~~~g~~~~----------~~~~~~~~~~~g~L~I~~vq 67 (67)
|+++.|.|.+.|.|.|.|.|.++|..+. .++. ....|+|+|.+++
T Consensus 1 G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~r~~---v~~~~~L~I~~v~ 55 (90)
T cd05726 1 GRTVTFQCEATGNPQPAIFWQKEGSQNLLFSYQPPQSSSRFS---VSQTGDLTITNVQ 55 (90)
T ss_pred CCEEEEEEECCccCCCEEEEEeCCCcceeecccCCCCCCeEE---ECCCCeEEEeeCC
Confidence 7889999999999999999999987531 1222 1234689998875
No 53
>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin. Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).
Probab=99.16 E-value=1.8e-10 Score=58.95 Aligned_cols=45 Identities=16% Similarity=0.352 Sum_probs=32.9
Q ss_pred EEEEeEecccCCCEEEEEECCccCCC---ceeeeee-cCCeEEEEccCC
Q psy6536 23 FVITCETVGVPTPLVSWRLNWNHIPA---KCTTTSE-DGVGTLTCPDIQ 67 (67)
Q Consensus 23 ~~l~C~a~G~P~P~i~W~~~g~~~~~---~~~~~~~-~~~g~L~I~~vq 67 (67)
+.|.|.+.|.|.|.|.|.|+|..+.. ++..... .+..+|.|.+++
T Consensus 1 v~L~C~v~G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~~~~~L~I~~~~ 49 (75)
T cd05744 1 VRLECRVSAIPPPQIFWKKNNEMLTYNTDRISLYQDNCGRICLLIQNAN 49 (75)
T ss_pred CEEEEEEeecCCCeEEEEECCEECCCCCCcEEEEEcCCCeEEEEECCCC
Confidence 47999999999999999999988752 3333222 222369998875
No 54
>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin. Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.16 E-value=8.6e-11 Score=59.11 Aligned_cols=42 Identities=24% Similarity=0.485 Sum_probs=32.5
Q ss_pred EEEEeEecccCCCEEEEEECCccCCC--ceeeeeecCCeEEEEccCC
Q psy6536 23 FVITCETVGVPTPLVSWRLNWNHIPA--KCTTTSEDGVGTLTCPDIQ 67 (67)
Q Consensus 23 ~~l~C~a~G~P~P~i~W~~~g~~~~~--~~~~~~~~~~g~L~I~~vq 67 (67)
+.|.|.|.|.|.|.|+|.|+|..+.. ++.. ...++|.|.+++
T Consensus 1 v~L~C~~~g~P~p~i~W~k~g~~~~~~~~~~~---~~~~~L~I~~~~ 44 (69)
T cd05746 1 VQIPCSAQGDPEPTITWNKDGVQVTESGKFHI---SPEGYLAIRDVG 44 (69)
T ss_pred CEeEecceEeCCCEEEEEECCEECCCCCCEEE---CCCCEEEECcCC
Confidence 47999999999999999999988753 2222 224789998874
No 55
>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.15 E-value=1.5e-10 Score=58.03 Aligned_cols=42 Identities=24% Similarity=0.472 Sum_probs=32.4
Q ss_pred EEEEeEecccCCCEEEEEECCccCCC-ceeeeeecCCeEEEEccCC
Q psy6536 23 FVITCETVGVPTPLVSWRLNWNHIPA-KCTTTSEDGVGTLTCPDIQ 67 (67)
Q Consensus 23 ~~l~C~a~G~P~P~i~W~~~g~~~~~-~~~~~~~~~~g~L~I~~vq 67 (67)
+.|.|.+.|.|.|.+.|.|+++.++. ++... +.++|+|.+++
T Consensus 1 v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~---~~~~L~I~~v~ 43 (69)
T cd05725 1 VEFQCEVGGDPVPTVLWRKEDGELPKGRAEIL---DDKSLKIRNVT 43 (69)
T ss_pred CEEEEECccCCCCEEEEEECCccCCCCcEEEe---eCCEEEECcCC
Confidence 47999999999999999999887754 33222 34689998874
No 56
>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa
Probab=99.15 E-value=1.5e-10 Score=58.67 Aligned_cols=43 Identities=23% Similarity=0.345 Sum_probs=32.7
Q ss_pred EEEEeEecccCCCEEEEEECCccCCCceeeeeecCCeEEEEccCC
Q psy6536 23 FVITCETVGVPTPLVSWRLNWNHIPAKCTTTSEDGVGTLTCPDIQ 67 (67)
Q Consensus 23 ~~l~C~a~G~P~P~i~W~~~g~~~~~~~~~~~~~~~g~L~I~~vq 67 (67)
+.|.|.+.|.|.|.++|.|+|..+..... . ....++|.|.+++
T Consensus 1 ~~l~c~v~g~P~p~v~W~k~g~~l~~~~~-~-~~~~~~L~I~~v~ 43 (71)
T cd04976 1 VRLPVKVKAYPPPEIQWYKNGKLISEKNR-T-KKSGHSLTIKDVT 43 (71)
T ss_pred CEEEeEEEEeCCCEEEEEECCEECCCCCE-E-EcCCCEEEECcCC
Confidence 46899999999999999999998854321 1 2234688888874
No 57
>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.
Probab=99.13 E-value=1.2e-10 Score=58.82 Aligned_cols=38 Identities=18% Similarity=0.336 Sum_probs=28.8
Q ss_pred EEEEeEecccCCCEEEEEECCccCCCceeeeeecCCeEEEEccC
Q psy6536 23 FVITCETVGVPTPLVSWRLNWNHIPAKCTTTSEDGVGTLTCPDI 66 (67)
Q Consensus 23 ~~l~C~a~G~P~P~i~W~~~g~~~~~~~~~~~~~~~g~L~I~~v 66 (67)
+.|.|.+.|.|.|.++|.|+|..+..+. ..++|.|+++
T Consensus 1 ~~l~c~v~g~P~P~v~W~kdg~~l~~~~------~~~~L~i~~v 38 (67)
T cd05863 1 VKLPVKVAAYPPPEFQWYKDGKLISGKH------SQHSLQIKDV 38 (67)
T ss_pred CEEEEEEEEeCCCEEEEEECCEECcccC------CcCEEEECCC
Confidence 4799999999999999999999885311 1245666654
No 58
>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=99.12 E-value=2.4e-10 Score=58.51 Aligned_cols=44 Identities=20% Similarity=0.304 Sum_probs=32.6
Q ss_pred EEEEeEecccCCCEEEEEECCccCCCceeeeeecCCeEEEEccCC
Q psy6536 23 FVITCETVGVPTPLVSWRLNWNHIPAKCTTTSEDGVGTLTCPDIQ 67 (67)
Q Consensus 23 ~~l~C~a~G~P~P~i~W~~~g~~~~~~~~~~~~~~~g~L~I~~vq 67 (67)
+.|.|.+.|.|.|.++|.|+|..+.+....... ..++|.|.+++
T Consensus 1 ~~l~c~v~g~P~P~v~W~kdg~~l~~~~~~~~~-~~~~L~I~~v~ 44 (72)
T cd07702 1 YRLTPKVKAFPAPEVIWLKDGLPAAEKCSRYHV-DGYSLVIKDVT 44 (72)
T ss_pred CeEEeeEEEcCCCeEEEEECCEECCCCCcEEEe-CCCEEEECcCC
Confidence 468999999999999999999987542111122 23589999875
No 59
>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily. Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.11 E-value=2.5e-10 Score=58.07 Aligned_cols=43 Identities=21% Similarity=0.427 Sum_probs=30.6
Q ss_pred EEEEeEecccCCCEEEEEECCccC-CC----ceeeeeecCCeEEEEccCC
Q psy6536 23 FVITCETVGVPTPLVSWRLNWNHI-PA----KCTTTSEDGVGTLTCPDIQ 67 (67)
Q Consensus 23 ~~l~C~a~G~P~P~i~W~~~g~~~-~~----~~~~~~~~~~g~L~I~~vq 67 (67)
+.|.|.|.|.|.|.|+|.|+|... +. ++.. ....+.|.|.+++
T Consensus 1 a~l~C~~~G~P~P~v~W~k~~~~~~~~~~~~~~~~--~~~~~~L~I~~~~ 48 (75)
T cd05763 1 ARLECAATGHPTPQIAWQKDGGTDFPAARERRMHV--MPEDDVFFIVDVK 48 (75)
T ss_pred CEeEeecccccCCEEEEEeCCCccCCcccccceEE--ecCCCEEEEeeCC
Confidence 468999999999999999998742 21 2221 2234688888764
No 60
>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins. Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.
Probab=99.11 E-value=9.7e-10 Score=57.06 Aligned_cols=55 Identities=22% Similarity=0.379 Sum_probs=41.5
Q ss_pred eCCCCCEEEcCCCcEEEEeEecc-cCCCEEEEEECCccCCCceeeeeecCCeEEEEccCC
Q psy6536 9 TNPPPKVTLDIGATFVITCETVG-VPTPLVSWRLNWNHIPAKCTTTSEDGVGTLTCPDIQ 67 (67)
Q Consensus 9 ~~~~~~~~~~~g~~~~l~C~a~G-~P~P~i~W~~~g~~~~~~~~~~~~~~~g~L~I~~vq 67 (67)
..++....+.+|+++.|.|.+.| .|.|.|.|.+++..++.+.. ...++|.|.+++
T Consensus 5 ~~~p~~~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~~~~~~----~~~~~L~I~~v~ 60 (85)
T cd05754 5 VEEPRSQEVRPGADVSFICRAKSKSPAYTLVWTRVGGGLPSRAM----DFNGILTIRNVQ 60 (85)
T ss_pred ecCCCceEEcCCCCEEEEEEcCCCCCCcEEEEEECCCcCCCccc----ccCCEEEECCCC
Confidence 33445678999999999999985 79999999999877654321 124688888764
No 61
>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily. Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.11 E-value=3.2e-10 Score=57.43 Aligned_cols=46 Identities=24% Similarity=0.328 Sum_probs=32.0
Q ss_pred CCcEEEEeEecccCCCEEEEEEC-CccCCCceeeeeecCCeEEEEccC
Q psy6536 20 GATFVITCETVGVPTPLVSWRLN-WNHIPAKCTTTSEDGVGTLTCPDI 66 (67)
Q Consensus 20 g~~~~l~C~a~G~P~P~i~W~~~-g~~~~~~~~~~~~~~~g~L~I~~v 66 (67)
|+++.|.|.+.|.|.|.+.|.++ +..+...... .....|+|.|.++
T Consensus 1 G~~~~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~-~~~~~~~L~i~~~ 47 (74)
T cd05764 1 GQRATLRCKARGDPEPAIHWISPDGKLISNSSRT-LVYDNGTLDILIT 47 (74)
T ss_pred CCeEEEEEEccCcCCCEEEEEeCCCEEecCCCeE-EEecCCEEEEEEC
Confidence 78899999999999999999985 4444321111 1123467888765
No 62
>KOG3513|consensus
Probab=99.10 E-value=2.5e-10 Score=80.26 Aligned_cols=63 Identities=25% Similarity=0.353 Sum_probs=48.6
Q ss_pred cCCeEEeCCCCCEEEcCCCcEEEEeEecccCCCEEEEEECCc-cCCCceeeeeecCCeEEEEccCC
Q psy6536 3 SPAYIKTNPPPKVTLDIGATFVITCETVGVPTPLVSWRLNWN-HIPAKCTTTSEDGVGTLTCPDIQ 67 (67)
Q Consensus 3 ~~P~~~~~~~~~~~~~~g~~~~l~C~a~G~P~P~i~W~~~g~-~~~~~~~~~~~~~~g~L~I~~vq 67 (67)
.+|.|...++.......|+.+.|+|.|.|+|.|.|.|+|.|+ .++.+..... -..+|.|.|+|
T Consensus 239 ~~P~i~~~~p~~~~a~~G~~v~LECfA~G~P~P~i~W~k~~g~~~~~r~~~~~--~~~vL~I~nv~ 302 (1051)
T KOG3513|consen 239 YAPKILVPFPETETALKGQSVKLECFALGNPTPQIKWRKVDGKPPPRRATYSN--YGKVLKIPNVQ 302 (1051)
T ss_pred cCCccccCCCCcccccCCCeEEEEEEecCCCCCcEEEEeCCCCCCCcceeeec--cccEEEecccC
Confidence 477887766656678899999999999999999999999999 5554443322 23578888875
No 63
>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.
Probab=99.10 E-value=1.2e-09 Score=56.31 Aligned_cols=51 Identities=10% Similarity=0.136 Sum_probs=38.0
Q ss_pred CEEEcCCCcEEEEeEecccCCCEEEEEECCccCCCceeeeeecCCeEEEEccCC
Q psy6536 14 KVTLDIGATFVITCETVGVPTPLVSWRLNWNHIPAKCTTTSEDGVGTLTCPDIQ 67 (67)
Q Consensus 14 ~~~~~~g~~~~l~C~a~G~P~P~i~W~~~g~~~~~~~~~~~~~~~g~L~I~~vq 67 (67)
...+.+|+.+.|.|.+.|. .|.|.|.|+|..+......... .++|.|.+++
T Consensus 3 ~~~~~~G~~v~l~C~~~~~-~~~v~W~k~g~~l~~~~~~~~~--~~~L~I~~~~ 53 (79)
T cd04973 3 SYSAHPGDLLQLRCRLRDD-VQSINWTKDGVQLGENNRTRIT--GEEVQIKDAV 53 (79)
T ss_pred cEEecCCCCEEEEEEecCC-CceEEEeeCCcCCCCCceEEEe--CCEEEECCCC
Confidence 4678899999999999996 6899999999888542111111 2578888764
No 64
>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D. Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas
Probab=99.09 E-value=7e-10 Score=58.70 Aligned_cols=52 Identities=12% Similarity=0.194 Sum_probs=39.2
Q ss_pred CCEEEcCCCcEEEEeEecccCCCEEEEEECCccCCCc-eeeeeecCCeEEEEccCC
Q psy6536 13 PKVTLDIGATFVITCETVGVPTPLVSWRLNWNHIPAK-CTTTSEDGVGTLTCPDIQ 67 (67)
Q Consensus 13 ~~~~~~~g~~~~l~C~a~G~P~P~i~W~~~g~~~~~~-~~~~~~~~~g~L~I~~vq 67 (67)
.+..+..|+++.|.|.+.+ |.|.|+|.++|..+... ...... .|.|.|.|++
T Consensus 4 ~~~~v~~G~~v~L~C~~~~-~~~~i~W~~ng~~i~~~~~r~~~~--~~~L~I~nv~ 56 (87)
T cd05873 4 RQRTFKLGNNAELKCSPKS-NLARVVWKFDGKVLTPESAKYLLY--RDGLLIFNAS 56 (87)
T ss_pred ceEEEECCCCEEEEEECCC-CCCeEEEEECCEECCCCCceEEEE--CCcEEEeCCC
Confidence 4568899999999999865 88999999999988532 111112 3679999875
No 65
>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.09 E-value=5.2e-10 Score=58.56 Aligned_cols=47 Identities=19% Similarity=0.359 Sum_probs=34.1
Q ss_pred CcEEEEeEecccCCC--EEEEEECCccCCC-----ceeeee-ecCCeEEEEccCC
Q psy6536 21 ATFVITCETVGVPTP--LVSWRLNWNHIPA-----KCTTTS-EDGVGTLTCPDIQ 67 (67)
Q Consensus 21 ~~~~l~C~a~G~P~P--~i~W~~~g~~~~~-----~~~~~~-~~~~g~L~I~~vq 67 (67)
+++.|.|.|.|.|.| .++|.++|..+.. ++.... ....|+|+|.+++
T Consensus 1 ~~~~L~C~a~g~P~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~ 55 (85)
T cd05854 1 ENLTLQCHASHDPTMDLTFTWSLDDFPIDLDKPNGHYRRMEVKETIGDLVIVNAQ 55 (85)
T ss_pred CcEEEEEEEecCCCCCeEEEEEECCeEccccCCCCcEEEEEecceEeEEEEccCC
Confidence 478999999999998 5799999987742 221111 1234789999885
No 66
>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=99.09 E-value=3.2e-10 Score=57.66 Aligned_cols=42 Identities=26% Similarity=0.260 Sum_probs=31.6
Q ss_pred EEEEeEecccCCCEEEEEECCccCCCceeeeeecCCeEEEEccCC
Q psy6536 23 FVITCETVGVPTPLVSWRLNWNHIPAKCTTTSEDGVGTLTCPDIQ 67 (67)
Q Consensus 23 ~~l~C~a~G~P~P~i~W~~~g~~~~~~~~~~~~~~~g~L~I~~vq 67 (67)
+.|.|.+.|.|.|.++|.|+|..+...... ...++|.|.+++
T Consensus 1 ~~~~c~v~G~P~P~v~W~k~g~~l~~~~~~---~~~~~L~I~~v~ 42 (70)
T cd05864 1 VKIPVKYYGYPPPEVKWYKNGQLIVLNHTF---KRGVHLTIYEVT 42 (70)
T ss_pred CEEEeEEEEeCCCEEEEEECCEECCCCCEE---ccCCEEEECcCC
Confidence 468999999999999999999988643221 123478887763
No 67
>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=99.08 E-value=8.1e-10 Score=57.18 Aligned_cols=41 Identities=24% Similarity=0.453 Sum_probs=34.4
Q ss_pred CeEEeCCCCCEEEcCCCcEEEEeEecccCC-CEEEEEECCccC
Q psy6536 5 AYIKTNPPPKVTLDIGATFVITCETVGVPT-PLVSWRLNWNHI 46 (67)
Q Consensus 5 P~~~~~~~~~~~~~~g~~~~l~C~a~G~P~-P~i~W~~~g~~~ 46 (67)
|.+...|+ ...+.+|+++.|.|.+.|.|. +.+.|.|||..+
T Consensus 1 ~vv~~~P~-~~~v~~G~~V~L~C~~~~~p~~~~~~W~kng~~l 42 (78)
T cd05752 1 AVVSLDPP-WTTIFQGEKVTLTCNGFNSPEQNSTQWYHNGKLL 42 (78)
T ss_pred CeEEeCCC-CeEeeCCCCEEEEEeCCCCCCCccEEEEECCEEe
Confidence 45666664 468899999999999999997 479999999877
No 68
>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.
Probab=99.07 E-value=5e-10 Score=56.03 Aligned_cols=44 Identities=30% Similarity=0.496 Sum_probs=31.9
Q ss_pred EEEEeEecccCCCEEEEEECCccCCCceeeeeecCCeEEEEccCC
Q psy6536 23 FVITCETVGVPTPLVSWRLNWNHIPAKCTTTSEDGVGTLTCPDIQ 67 (67)
Q Consensus 23 ~~l~C~a~G~P~P~i~W~~~g~~~~~~~~~~~~~~~g~L~I~~vq 67 (67)
+.|.|.|.|.|.|.++|.+++..+....... ....++|.|.+++
T Consensus 1 v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~-~~~~~~L~i~~v~ 44 (71)
T cd05731 1 LLLECIAEGLPTPEISWIKIGGELPADRTKF-ENFNKTLKIDNVS 44 (71)
T ss_pred CEEEEEeeEecCCeEEEEECCeECCCCceeE-ecCCCEEEECCCC
Confidence 4799999999999999999998774321111 2234678888764
No 69
>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2. Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.07 E-value=1e-09 Score=58.41 Aligned_cols=54 Identities=24% Similarity=0.405 Sum_probs=39.3
Q ss_pred CCEEEcCCCcEEEEeEecccCCCEEEEEEC-CccCC--CceeeeeecCCeEEEEccCC
Q psy6536 13 PKVTLDIGATFVITCETVGVPTPLVSWRLN-WNHIP--AKCTTTSEDGVGTLTCPDIQ 67 (67)
Q Consensus 13 ~~~~~~~g~~~~l~C~a~G~P~P~i~W~~~-g~~~~--~~~~~~~~~~~g~L~I~~vq 67 (67)
.+..+.+|+++.|.|.+.|.|. .++|.++ +..+. .++........++|.|.+++
T Consensus 8 ~~~~v~~G~~v~l~C~~~G~P~-~v~W~k~~g~~~~~~~r~~~~~~g~~~~L~I~~v~ 64 (92)
T cd05866 8 SKVELSVGESKFFTCTAIGEPE-SIDWYNPQGEKIVSSQRVVVQKEGVRSRLTIYNAN 64 (92)
T ss_pred cceEEcCCCeEEEEEEEEEeCC-eEEEEeCCCeEecCCCCEEEEeCCCeeEEEEecCC
Confidence 4568999999999999999998 8999986 44553 24443222223489998874
No 70
>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin. Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.06 E-value=7.9e-10 Score=57.46 Aligned_cols=47 Identities=21% Similarity=0.351 Sum_probs=34.0
Q ss_pred CcEEEEeEecccCCC--EEEEEECCccCCC-----ceee-eeecCCeEEEEccCC
Q psy6536 21 ATFVITCETVGVPTP--LVSWRLNWNHIPA-----KCTT-TSEDGVGTLTCPDIQ 67 (67)
Q Consensus 21 ~~~~l~C~a~G~P~P--~i~W~~~g~~~~~-----~~~~-~~~~~~g~L~I~~vq 67 (67)
+++.|.|.|.|.|.| .+.|.++|..+.. ++.. ......|+|.|.+++
T Consensus 1 e~~~L~C~~~g~P~p~i~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~ 55 (85)
T cd04970 1 ESITLQCHASHDPTLDLTFTWSFNGVPIDFDKDGGHYRRVGGKDSNGDLMIRNAQ 55 (85)
T ss_pred CcEEEEEEEecCCCCCeEEEEEECCeEeeccCCCccEEEEecccccceEEEccCC
Confidence 478999999999999 5689999988742 1111 112345789999875
No 71
>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins. Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s
Probab=99.04 E-value=1.6e-09 Score=57.39 Aligned_cols=57 Identities=21% Similarity=0.388 Sum_probs=39.2
Q ss_pred eCCCCCEEEcCCCcEEEEeEecccCCCEEEEEE-CCccCC--Cceeeee-ecCCeEEEEccCC
Q psy6536 9 TNPPPKVTLDIGATFVITCETVGVPTPLVSWRL-NWNHIP--AKCTTTS-EDGVGTLTCPDIQ 67 (67)
Q Consensus 9 ~~~~~~~~~~~g~~~~l~C~a~G~P~P~i~W~~-~g~~~~--~~~~~~~-~~~~g~L~I~~vq 67 (67)
..|. ...+..|+++.|.|.+.|.| |.|+|.+ ++..+. .++.... ....++|+|.+++
T Consensus 5 v~p~-~~~v~~G~~~~l~C~~~G~p-~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~ 65 (92)
T cd04977 5 IVPS-QGEISVGESKFFLCQVIGEP-KDISWFSPNGEKLVTQQQISVVQNDDVRSTLTIYNAN 65 (92)
T ss_pred EecC-cEEECCCCeEEEEEEeEeeC-CeEEEECCCCCEeccCCCEEEEeCCCCEEEEEEecCC
Confidence 3443 47899999999999999998 5999998 454443 2332221 1223579998874
No 72
>KOG4194|consensus
Probab=99.03 E-value=3.9e-10 Score=76.42 Aligned_cols=45 Identities=22% Similarity=0.539 Sum_probs=40.4
Q ss_pred CcCCeEEeCCCCCEEEcCCCcEEEEeEecccCCCEEEEEECCcc-CC
Q psy6536 2 TSPAYIKTNPPPKVTLDIGATFVITCETVGVPTPLVSWRLNWNH-IP 47 (67)
Q Consensus 2 ~~~P~~~~~~~~~~~~~~g~~~~l~C~a~G~P~P~i~W~~~g~~-~~ 47 (67)
+..|+|.+.|.+ .++..|+.+.|.|.|+|.|.|.|.|.|+|+. +|
T Consensus 610 ~~~PsFtktP~d-ltl~tg~mArl~CaAtG~P~PeIawqkdggtdFP 655 (873)
T KOG4194|consen 610 NQAPSFTKTPED-LTLRTGQMARLECAATGHPRPEIAWQKDGGTDFP 655 (873)
T ss_pred eccCccccCccc-ceeecccceeeeeeccCCCCcceeehhcCCCCCc
Confidence 467999999864 6999999999999999999999999999986 65
No 73
>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.
Probab=99.03 E-value=4.5e-10 Score=59.15 Aligned_cols=24 Identities=17% Similarity=0.466 Sum_probs=22.1
Q ss_pred CCcEEEEeEecccCCCEEEEEECC
Q psy6536 20 GATFVITCETVGVPTPLVSWRLNW 43 (67)
Q Consensus 20 g~~~~l~C~a~G~P~P~i~W~~~g 43 (67)
|+++.|.|.|.|.|.|.|+|.|++
T Consensus 1 G~~v~l~C~v~g~P~P~i~W~k~~ 24 (90)
T cd04974 1 GSDVEFHCKVYSDAQPHIQWLKHV 24 (90)
T ss_pred CCcEEEEEEEeCCCCCeEEEEEec
Confidence 678999999999999999999963
No 74
>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=99.03 E-value=1.1e-09 Score=57.55 Aligned_cols=47 Identities=21% Similarity=0.307 Sum_probs=34.3
Q ss_pred CCcEEEEeEecccCCCEEEEEECCccCCC---ceeeee-ecCC---eEEEEccC
Q psy6536 20 GATFVITCETVGVPTPLVSWRLNWNHIPA---KCTTTS-EDGV---GTLTCPDI 66 (67)
Q Consensus 20 g~~~~l~C~a~G~P~P~i~W~~~g~~~~~---~~~~~~-~~~~---g~L~I~~v 66 (67)
|+.+.|.|.|.|.|.|.|.|.+++..+.. ++.... ..+. ++|.|.++
T Consensus 1 g~~~~l~C~~~g~p~~~i~W~k~~~~i~~~~~r~~~~~~~~~~~~~s~L~I~~~ 54 (88)
T cd05735 1 GQKKEMSCTAHGEKPIIVRWEKEDRIINPEMSRYLVSTKEVGDEVISTLQILPT 54 (88)
T ss_pred CCeEEEEEEEECCCCCEEEEeeCCEECCCCCCcEEEEEecCCCcEEEEEEECCC
Confidence 78999999999999999999999987742 333221 1112 46888765
No 75
>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=98.98 E-value=1.4e-09 Score=55.79 Aligned_cols=45 Identities=18% Similarity=0.378 Sum_probs=29.8
Q ss_pred EEEEeEecccCCCEEEEEECCccC-CC------ceeeeeecCCeEEEEccCC
Q psy6536 23 FVITCETVGVPTPLVSWRLNWNHI-PA------KCTTTSEDGVGTLTCPDIQ 67 (67)
Q Consensus 23 ~~l~C~a~G~P~P~i~W~~~g~~~-~~------~~~~~~~~~~g~L~I~~vq 67 (67)
+.|.|.|.|.|.|.|+|.++++.. +. ..........|+|.|.+++
T Consensus 1 v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~L~I~~v~ 52 (79)
T cd05734 1 VTLNCSAEGYPPPTIVWKHSKGRGHPQHTHTCCLAGRIQLLSNGSLLIKHVL 52 (79)
T ss_pred CEeEeeCeEeCCCEEEEEECCCccccccccccccCCCEEEecCCeEEECcCC
Confidence 579999999999999999975432 11 0001111235789998874
No 76
>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2). Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.
Probab=98.98 E-value=3.6e-09 Score=55.59 Aligned_cols=23 Identities=22% Similarity=0.564 Sum_probs=21.6
Q ss_pred CCcEEEEeEecccCCCEEEEEEC
Q psy6536 20 GATFVITCETVGVPTPLVSWRLN 42 (67)
Q Consensus 20 g~~~~l~C~a~G~P~P~i~W~~~ 42 (67)
|+++.|.|.|.|.|.|.|+|.|+
T Consensus 1 G~~v~L~C~~~g~P~P~i~W~k~ 23 (90)
T cd05858 1 GSTVEFVCKVYSDAQPHIQWLKH 23 (90)
T ss_pred CCeEEEEEEEecCCCCEEEEEEe
Confidence 68899999999999999999984
No 77
>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun
Probab=98.97 E-value=1.8e-09 Score=56.16 Aligned_cols=44 Identities=20% Similarity=0.297 Sum_probs=30.8
Q ss_pred EEEeEecccCCCEEEEEECCccCCC-c-eeee-e------ecCCeEEEEccCC
Q psy6536 24 VITCETVGVPTPLVSWRLNWNHIPA-K-CTTT-S------EDGVGTLTCPDIQ 67 (67)
Q Consensus 24 ~l~C~a~G~P~P~i~W~~~g~~~~~-~-~~~~-~------~~~~g~L~I~~vq 67 (67)
-|.|.+.|.|.|.|+|.|+|..+.. . .... . ....|.|+|.+++
T Consensus 2 ~i~~~v~G~P~P~v~W~k~g~~i~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~ 54 (81)
T cd04971 2 CIPFTVRGNPKPTLTWYHNGAVLNESDYIRTEIHYEVTTPTEYHGCLQFDNPT 54 (81)
T ss_pred eEEEEeEeeCCCcEEEEECCEECcCCCceeEEEEeecccccccEEEEEECCCC
Confidence 3789999999999999999998853 1 1111 0 1124678888764
No 78
>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB. TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.
Probab=98.97 E-value=1.7e-09 Score=56.26 Aligned_cols=43 Identities=16% Similarity=0.247 Sum_probs=30.5
Q ss_pred EEeEecccCCCEEEEEECCccCCC-ce-e--ee---eecCCeEEEEccCC
Q psy6536 25 ITCETVGVPTPLVSWRLNWNHIPA-KC-T--TT---SEDGVGTLTCPDIQ 67 (67)
Q Consensus 25 l~C~a~G~P~P~i~W~~~g~~~~~-~~-~--~~---~~~~~g~L~I~~vq 67 (67)
+.|.+.|+|.|.|+|+|+|..|.+ +. . +. .....++|.|.+++
T Consensus 3 i~~~v~G~P~Pti~W~kng~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~ 52 (79)
T cd05855 3 IPFTVKGNPKPTLQWFHEGAILNESEYICTKIHVINNTEYHGCLQLDNPT 52 (79)
T ss_pred EEEEEeEeCCCceEEEECCEECCCCcceeeeeEeecccceEEEEEECCCC
Confidence 789999999999999999998853 21 1 11 11224678888763
No 79
>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily. Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.97 E-value=3.1e-09 Score=54.34 Aligned_cols=24 Identities=29% Similarity=0.736 Sum_probs=22.4
Q ss_pred CCcEEEEeEecccCCCEEEEEECC
Q psy6536 20 GATFVITCETVGVPTPLVSWRLNW 43 (67)
Q Consensus 20 g~~~~l~C~a~G~P~P~i~W~~~g 43 (67)
|+++.|.|.+.|.|.|.|+|.|++
T Consensus 1 G~~v~l~C~~~g~P~p~v~W~k~~ 24 (81)
T cd05765 1 GETASFHCDVTGRPPPEITWEKQV 24 (81)
T ss_pred CCcEEEEeeccccCCCcEEEEecC
Confidence 789999999999999999999974
No 80
>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.
Probab=98.96 E-value=6.7e-09 Score=55.39 Aligned_cols=55 Identities=15% Similarity=0.175 Sum_probs=39.6
Q ss_pred CCEEEcCCCcEEEEeEecccCCCEEEEEECCc--------c-C-CCceeeeee-cCCeEEEEccCC
Q psy6536 13 PKVTLDIGATFVITCETVGVPTPLVSWRLNWN--------H-I-PAKCTTTSE-DGVGTLTCPDIQ 67 (67)
Q Consensus 13 ~~~~~~~g~~~~l~C~a~G~P~P~i~W~~~g~--------~-~-~~~~~~~~~-~~~g~L~I~~vq 67 (67)
+++.+.+|+++.|.|.+.|.|.|.|.|.+.++ . + ..++..... .+..+|.|++++
T Consensus 5 ~~v~v~eG~~v~L~C~~~~~p~~~v~W~~~~~~~l~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~ 70 (95)
T cd07701 5 QNVTVVEGGTANLTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISISDVS 70 (95)
T ss_pred ceEEEecCCcEEEEEEEecCCceEEEEeCCCCeEEEEcCcccccCCCEEEEECCCCcEEEEECcCC
Confidence 45789999999999999999999999986322 1 1 124433222 234689999986
No 81
>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins. Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.
Probab=98.93 E-value=4.1e-09 Score=53.57 Aligned_cols=45 Identities=20% Similarity=0.353 Sum_probs=31.1
Q ss_pred EEEEeEecccCCCEEEEEECCccCCC--ceeeeeecCCeEEEEccCC
Q psy6536 23 FVITCETVGVPTPLVSWRLNWNHIPA--KCTTTSEDGVGTLTCPDIQ 67 (67)
Q Consensus 23 ~~l~C~a~G~P~P~i~W~~~g~~~~~--~~~~~~~~~~g~L~I~~vq 67 (67)
+.|.|.+.|.|.|.|.|.|++..+.. +..........+|.|++++
T Consensus 1 ~~L~C~v~g~P~p~v~W~k~~~~l~~~~~~~~~~~~~~~~l~I~~~~ 47 (76)
T cd05736 1 ASLRCHAEGIPLPRLTWLKNGMDITPKLSKQLTLIANGSELHISNVR 47 (76)
T ss_pred CEeEeEeeecCCCEEEEEECCEECCCCCCccEEEeCCCCEEEECcCC
Confidence 46899999999999999999987742 1111112222368888764
No 82
>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.
Probab=98.93 E-value=2.1e-08 Score=54.11 Aligned_cols=63 Identities=21% Similarity=0.295 Sum_probs=44.0
Q ss_pred cCCeEEeCCCCCEEEcCCCcEEEEeEecccCCC-EEEEEECCccCC----Cceeeeee----cCCeEEEEccCC
Q psy6536 3 SPAYIKTNPPPKVTLDIGATFVITCETVGVPTP-LVSWRLNWNHIP----AKCTTTSE----DGVGTLTCPDIQ 67 (67)
Q Consensus 3 ~~P~~~~~~~~~~~~~~g~~~~l~C~a~G~P~P-~i~W~~~g~~~~----~~~~~~~~----~~~g~L~I~~vq 67 (67)
.||.|... ....+.+|+++.|.|.|.+.|.| .|.|...+..+. .++.+... ....+|+|++++
T Consensus 1 gpP~i~~~--~s~~~~~G~~~~L~C~~~s~P~P~~i~W~w~~~~i~~~~~~r~~I~~~~~~~g~~S~L~I~~~~ 72 (98)
T cd05898 1 GPPIISSE--QVQYAVRGERGKVKCFIGSTPPPDRIAWAWKENVLESGTSERYTVERTSTGSGVLSTLTINNIM 72 (98)
T ss_pred CCCEEecC--ceEEEeCCCcEEEEEEEccCCCCcEEEEEEccccccCCCCCCEEEEEEccCCCcEEEEEECCCc
Confidence 47888544 34678899999999999999988 468887776653 24443322 133579998863
No 83
>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin. Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.
Probab=98.93 E-value=7e-09 Score=54.26 Aligned_cols=53 Identities=15% Similarity=0.176 Sum_probs=37.7
Q ss_pred CCEEEcCCCcEEEEeEecccCCCEEEEEECCccCCCce---eeeeecCCeEEEEccCC
Q psy6536 13 PKVTLDIGATFVITCETVGVPTPLVSWRLNWNHIPAKC---TTTSEDGVGTLTCPDIQ 67 (67)
Q Consensus 13 ~~~~~~~g~~~~l~C~a~G~P~P~i~W~~~g~~~~~~~---~~~~~~~~g~L~I~~vq 67 (67)
..+.+.+|+++.|.|.+.| |.|.+.|.+++..+.... ...... .+.|.|.+++
T Consensus 4 ~~~~v~~g~~v~L~C~~~~-p~~~i~W~k~~~~~~~~~~~~~~~~~~-~~~L~I~~~~ 59 (89)
T cd04979 4 KVVTVVEGNSVFLECSPKS-NLASVVWLFQGGPLQRKEEPEERLLVT-EDGLLIRSVS 59 (89)
T ss_pred eEEEEECCCcEEEEEeCCC-CCceEEEEECCcccccccCcCceEEEc-CCCEEEccCC
Confidence 4567889999999999998 999999999998764211 111111 2458887764
No 84
>PHA02826 IL-1 receptor-like protein; Provisional
Probab=98.92 E-value=9.9e-09 Score=62.38 Aligned_cols=52 Identities=13% Similarity=0.179 Sum_probs=39.4
Q ss_pred CEEEcCCCcEEEEeEec-----ccCCCEEEEEECCccCCC--ceeeeeecCCeEEEEccCC
Q psy6536 14 KVTLDIGATFVITCETV-----GVPTPLVSWRLNWNHIPA--KCTTTSEDGVGTLTCPDIQ 67 (67)
Q Consensus 14 ~~~~~~g~~~~l~C~a~-----G~P~P~i~W~~~g~~~~~--~~~~~~~~~~g~L~I~~vq 67 (67)
...+.+|+++.|.|.|. |.|.|.|+|.|+|..+.. +... ..+.++|.|.+|+
T Consensus 138 ~~~~~~G~~v~L~C~~~~~~~~~~p~p~I~WyKng~~l~~~~r~~~--~~~~~~L~I~~V~ 196 (227)
T PHA02826 138 NYQFNSGKDSKLHCYGTDGISSTFKDYTLTWYKNGNIVLYTDRIQL--RNNNSTLVIKSAT 196 (227)
T ss_pred cceEecCCCEEEEeeCCCCccccCCCceEEEEECCEECCCCCCEEE--eCCCCEEEECcCC
Confidence 35677999999999997 457899999999998853 3322 2334689999875
No 85
>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs). Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv
Probab=98.91 E-value=5.2e-09 Score=52.77 Aligned_cols=45 Identities=16% Similarity=0.295 Sum_probs=32.1
Q ss_pred EEEEeEecc-cCCCEEEEEECCccCCC--cee---eeeecCCeEEEEccCC
Q psy6536 23 FVITCETVG-VPTPLVSWRLNWNHIPA--KCT---TTSEDGVGTLTCPDIQ 67 (67)
Q Consensus 23 ~~l~C~a~G-~P~P~i~W~~~g~~~~~--~~~---~~~~~~~g~L~I~~vq 67 (67)
+.|.|.|.| .|.|.++|.|+|..+.. +.. .......++|.|.+++
T Consensus 1 ~~l~C~~~g~~P~p~~~W~k~g~~l~~~~~~~~~~~~~~~~~~~L~I~~~~ 51 (75)
T cd05750 1 LVLKCEATSEYPSLRFKWFKDGKELNRKNKPRNIKIRNKKKNSELQINKAK 51 (75)
T ss_pred CEEEEEccCCCCCceEEEEcCCeeccccCCcceEEEEecCceEEEEEccCC
Confidence 469999999 99999999999988753 111 1122334678888763
No 86
>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=98.90 E-value=8.5e-09 Score=55.49 Aligned_cols=59 Identities=19% Similarity=0.246 Sum_probs=42.3
Q ss_pred EEeCCCCCEEEcCCCcEEEEe-EecccCCCEEEEEECCccC--C--CceeeeeecCCeEEEEccCC
Q psy6536 7 IKTNPPPKVTLDIGATFVITC-ETVGVPTPLVSWRLNWNHI--P--AKCTTTSEDGVGTLTCPDIQ 67 (67)
Q Consensus 7 ~~~~~~~~~~~~~g~~~~l~C-~a~G~P~P~i~W~~~g~~~--~--~~~~~~~~~~~g~L~I~~vq 67 (67)
|...+.+...+.+|+.+.|.| .-.|.|.|.+.|.+++..+ . .+.. . ....|.|.|.+|+
T Consensus 5 f~~~~~~~~~v~eG~~~~L~C~pP~g~P~p~~~W~k~~~~~~~~~d~r~~-~-~~~~G~L~fs~v~ 68 (96)
T cd05727 5 FPLEERDEVKVKEGWGVVLFCDPPPHYPDLSYRWLLNEFPNFIPEDGRRF-V-SQTNGNLYIAKVE 68 (96)
T ss_pred cCcCCcCceeeeeCCcEEEeeCCCCCCCCCEEEEEECCcccccccCCCeE-E-eCCCCcEEEeecC
Confidence 333444556788999999999 5668999999999998753 2 1221 2 2345899999874
No 87
>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=98.89 E-value=7.3e-09 Score=55.23 Aligned_cols=53 Identities=17% Similarity=0.161 Sum_probs=38.3
Q ss_pred CEEEcCCCcEEEEeEecc-----cCCCEEEEEECCccCCC---ceeeeeecCCeEEEEccCC
Q psy6536 14 KVTLDIGATFVITCETVG-----VPTPLVSWRLNWNHIPA---KCTTTSEDGVGTLTCPDIQ 67 (67)
Q Consensus 14 ~~~~~~g~~~~l~C~a~G-----~P~P~i~W~~~g~~~~~---~~~~~~~~~~g~L~I~~vq 67 (67)
...+.+|+.+.|.|.+.| .|.|.|+|.|+|..+.. ....... ..++|.|.+++
T Consensus 8 ~~~v~~G~~~~L~C~~~g~~~~~~p~~~v~Wyk~~~~~~~~~~~~~r~~~-~~~~L~I~~~~ 68 (94)
T cd05756 8 KSYVLEGEPVVIKCPLFYSYIAQSPGLNLTWYKSDGKTPIPTEERSRMHQ-QKDLLWFLPAA 68 (94)
T ss_pred EEEEecCCCeEEECCCCCcccccCCCceEEEEEcCCCCcccccccceeee-cCCeEEEccCC
Confidence 456789999999999999 79999999999976531 1111111 24678887764
No 88
>KOG4221|consensus
Probab=98.88 E-value=5.1e-09 Score=74.57 Aligned_cols=61 Identities=23% Similarity=0.367 Sum_probs=46.4
Q ss_pred eEEeCCCCCEEEcCCCcEEEEeEecccCCCEEEEEECCccCCCceeeeeecCCeEEEEccCC
Q psy6536 6 YIKTNPPPKVTLDIGATFVITCETVGVPTPLVSWRLNWNHIPAKCTTTSEDGVGTLTCPDIQ 67 (67)
Q Consensus 6 ~~~~~~~~~~~~~~g~~~~l~C~a~G~P~P~i~W~~~g~~~~~~~~~~~~~~~g~L~I~~vq 67 (67)
.|...| ....+..|+++.|.|.|.|.|+|.|+|.+||..+.-.-......+.+.|.|++++
T Consensus 239 ~fl~~p-~~~~v~~g~~v~leCvvs~~p~p~v~Wlrng~~i~~ds~rivl~g~~slliS~a~ 299 (1381)
T KOG4221|consen 239 VFLDEP-SNAVVVEGDDVVLECVVSGVPKPSVKWLRNGEKISVDSYRIVLVGGSSLLISNAT 299 (1381)
T ss_pred eeecCC-CccccccCCcEEEEEEecCCCCCceEEeeCCeeeeecceEEEEecccceEEeccc
Confidence 356555 5678899999999999999999999999999987421122334455778888764
No 89
>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.
Probab=98.87 E-value=1.1e-08 Score=53.93 Aligned_cols=47 Identities=21% Similarity=0.393 Sum_probs=33.9
Q ss_pred CcEEEEeEeccc--CCCEEEEEECCccCC--C---ceeeee-ecCCeEEEEccCC
Q psy6536 21 ATFVITCETVGV--PTPLVSWRLNWNHIP--A---KCTTTS-EDGVGTLTCPDIQ 67 (67)
Q Consensus 21 ~~~~l~C~a~G~--P~P~i~W~~~g~~~~--~---~~~~~~-~~~~g~L~I~~vq 67 (67)
+++.|.|.|.+. +.+.|.|.+||..+. . ++.... ....|.|.|+|++
T Consensus 1 ~~~~l~C~v~~d~~l~~~~~W~~dg~~i~~~~~~~~~~~~~~~~~~~~L~I~nv~ 55 (85)
T cd05853 1 ESIVLPCQVSHDHSLDIVFTWSFNGHLIDFQKDGDHFERVGGQDSAGDLMIRSIQ 55 (85)
T ss_pred CcEEEEEEeccCCCCCcEEEEEECCEECcccCCCccEEEeccCCCCCcEEEecCC
Confidence 478999999884 488999999999885 1 222111 1245789999986
No 90
>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins. Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF
Probab=98.86 E-value=7.9e-09 Score=53.54 Aligned_cols=48 Identities=19% Similarity=0.289 Sum_probs=33.9
Q ss_pred CCcEEEEeEeccc--CCCEEEEEECCccCCCcee-----e--eeecCCeEEEEccCC
Q psy6536 20 GATFVITCETVGV--PTPLVSWRLNWNHIPAKCT-----T--TSEDGVGTLTCPDIQ 67 (67)
Q Consensus 20 g~~~~l~C~a~G~--P~P~i~W~~~g~~~~~~~~-----~--~~~~~~g~L~I~~vq 67 (67)
|+++.|.|.|.|. |.|.|.|.+++..+..... . ......++|+|.+++
T Consensus 1 Ge~~~L~C~~~g~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~v~ 57 (84)
T cd05742 1 GETLVLNCTVLTELNEGVDFQWTYPGKKRGRGKSMVTRQSLSEATELSSTLTIPNAT 57 (84)
T ss_pred CCeEEEEEEEEeCCCccEEEEEecCCcccCCceEeecccccccceEEEEEEEECCCC
Confidence 7899999999999 8999999998876532110 0 011123679998875
No 91
>smart00408 IGc2 Immunoglobulin C-2 Type.
Probab=98.86 E-value=1.5e-08 Score=48.32 Aligned_cols=46 Identities=24% Similarity=0.460 Sum_probs=34.0
Q ss_pred CCCcEEEEeEecccCCCEEEEEECCccCCCceeeeeecCCeEEEEccC
Q psy6536 19 IGATFVITCETVGVPTPLVSWRLNWNHIPAKCTTTSEDGVGTLTCPDI 66 (67)
Q Consensus 19 ~g~~~~l~C~a~G~P~P~i~W~~~g~~~~~~~~~~~~~~~g~L~I~~v 66 (67)
+|+++.|.|.+.+.|.|.+.|.+++..+..... .....+.|.|.++
T Consensus 1 ~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~--~~~~~~~L~i~~~ 46 (63)
T smart00408 1 EGQSVTLTCPAEGDPVPNITWLKDGKPLPESNR--LSASGSTLTIKSV 46 (63)
T ss_pred CCceEEEEeeCccCCCCeEEEEECCEECCCCCE--EecCCcEEEEeeC
Confidence 488999999999999999999999887753111 1223356777665
No 92
>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins. Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin
Probab=98.84 E-value=2.6e-08 Score=50.91 Aligned_cols=33 Identities=21% Similarity=0.522 Sum_probs=29.7
Q ss_pred EEEcCCCcEEEEeEecccCCCEEEEEECCccCC
Q psy6536 15 VTLDIGATFVITCETVGVPTPLVSWRLNWNHIP 47 (67)
Q Consensus 15 ~~~~~g~~~~l~C~a~G~P~P~i~W~~~g~~~~ 47 (67)
+.+..|+.+.|.|.+.|.|.|.+.|.+++..+.
T Consensus 4 ~~~~~G~~~~l~C~~~~~p~~~v~W~k~~~~~~ 36 (85)
T cd05729 4 HAVPAGSTVRLKCPASGNPRPTITWLKDGKPFK 36 (85)
T ss_pred eEecCCCcEEEEEEcCCCCCCeEEEEECCEECc
Confidence 456789999999999999999999999988764
No 93
>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4. Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=98.78 E-value=5e-08 Score=52.21 Aligned_cols=30 Identities=17% Similarity=0.228 Sum_probs=26.6
Q ss_pred EEEcCCCcEEEEeEecccCCCEEEEEECCc
Q psy6536 15 VTLDIGATFVITCETVGVPTPLVSWRLNWN 44 (67)
Q Consensus 15 ~~~~~g~~~~l~C~a~G~P~P~i~W~~~g~ 44 (67)
+.+.+|++|.|.|.+.|.|.+.|.|.+++.
T Consensus 2 v~~~~G~~VtL~C~~s~~~~~~i~W~~~~~ 31 (94)
T cd07690 2 VLGKKGDTAELPCTASQKKSIQFHWKNSNQ 31 (94)
T ss_pred eEeeCCCCEEEEEEeCCCCCcEEEEEECCc
Confidence 457899999999999999999999997763
No 94
>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively). Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form
Probab=98.74 E-value=1e-07 Score=50.30 Aligned_cols=55 Identities=11% Similarity=0.225 Sum_probs=38.3
Q ss_pred CCEEEcCCCcEEEEeEecccCCCEEEEEECCcc---------CC-Cceeeee-ecCCeEEEEccCC
Q psy6536 13 PKVTLDIGATFVITCETVGVPTPLVSWRLNWNH---------IP-AKCTTTS-EDGVGTLTCPDIQ 67 (67)
Q Consensus 13 ~~~~~~~g~~~~l~C~a~G~P~P~i~W~~~g~~---------~~-~~~~~~~-~~~~g~L~I~~vq 67 (67)
..+.+.+|+++.|.|.+.|.|.|.+.|.+.++. +. .++.... .....+|+|++++
T Consensus 5 ~~~~v~~G~~v~L~C~~~~~~~~~v~W~~p~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~ 70 (95)
T cd05717 5 QDVTVVEGGTATLKCRVKNNDNSSLQWSNPNQQTLYFNDKRALRDNRIQLVNFSANELSISISNVS 70 (95)
T ss_pred CcEEEcCCCCEEEEEEECCCCCceEEEeCCCCcEEEeccccccccCcEEEEcCCCCeeEEEEccCC
Confidence 457889999999999999999999999864332 11 2333211 1233579998875
No 95
>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.
Probab=98.72 E-value=4.1e-08 Score=51.14 Aligned_cols=27 Identities=26% Similarity=0.442 Sum_probs=24.3
Q ss_pred CCcEEEEeEecccCCCEEEEEECCccC
Q psy6536 20 GATFVITCETVGVPTPLVSWRLNWNHI 46 (67)
Q Consensus 20 g~~~~l~C~a~G~P~P~i~W~~~g~~~ 46 (67)
|+++.|.|.+.|.|.|.+.|.++++..
T Consensus 1 Ge~~~l~C~~~~~~~~~~~W~~~~~~~ 27 (84)
T cd05861 1 GETITVNCIVQGNEVVDFSWTYPGKDI 27 (84)
T ss_pred CCcEEEEEEEECCCccEEEEEECCccC
Confidence 789999999999999999999887643
No 96
>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs.; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....
Probab=98.72 E-value=1.2e-07 Score=46.40 Aligned_cols=48 Identities=31% Similarity=0.612 Sum_probs=33.9
Q ss_pred CCcEEEEeEe-cccCCCEEEEEECCccCCCceeee-eecCCe---EEEEccCC
Q psy6536 20 GATFVITCET-VGVPTPLVSWRLNWNHIPAKCTTT-SEDGVG---TLTCPDIQ 67 (67)
Q Consensus 20 g~~~~l~C~a-~G~P~P~i~W~~~g~~~~~~~~~~-~~~~~g---~L~I~~vq 67 (67)
|+++.|.|.+ .+.|.+.+.|.+++..+....... ...... +|+|.+++
T Consensus 1 G~~v~L~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~ 53 (64)
T PF00047_consen 1 GSSVTLTCSVSSGPPPTTVTWSKNGQSLPEGSTTNRSTNSVSSTSRLTISNVT 53 (64)
T ss_dssp TSEEEEEEEEEESSSTSEEEEEETTTTTSEEEEEEEEETTTEEEEEEEESSCT
T ss_pred CCeEEEEeecCCCCCCcEEEEEECCccccCcceeEeecccceeeeEEEEccCC
Confidence 7899999999 889999999999998775322211 112111 28888764
No 97
>PHA02785 IL-beta-binding protein; Provisional
Probab=98.70 E-value=1.4e-07 Score=59.69 Aligned_cols=42 Identities=26% Similarity=0.376 Sum_probs=33.7
Q ss_pred CCeEEeCCCCCEEEcCCCcEEEEeEecccCCC---EEEEEECCccCC
Q psy6536 4 PAYIKTNPPPKVTLDIGATFVITCETVGVPTP---LVSWRLNWNHIP 47 (67)
Q Consensus 4 ~P~~~~~~~~~~~~~~g~~~~l~C~a~G~P~P---~i~W~~~g~~~~ 47 (67)
||.+. .| ....+..|+++.|.|.|.|.|.| .|.|.+||..++
T Consensus 221 pp~~~-~p-~~~~~~~G~~v~L~C~a~g~P~~~~~~v~W~kng~~i~ 265 (326)
T PHA02785 221 PPTMQ-LP-EGVVTSIGSNLTIACRVSLRPPTTDADVFWISNGMYYE 265 (326)
T ss_pred Cceec-CC-CcEEecCCCcEEEEEEEECCCCCCCceEEEEECCEECC
Confidence 45543 44 45677889999999999999974 899999998774
No 98
>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process
Probab=98.68 E-value=7.7e-08 Score=48.86 Aligned_cols=45 Identities=27% Similarity=0.389 Sum_probs=31.0
Q ss_pred EEEEeEecc-cCCCEEEEEECCccCCC------ceeeeeecCCeEEEEccCC
Q psy6536 23 FVITCETVG-VPTPLVSWRLNWNHIPA------KCTTTSEDGVGTLTCPDIQ 67 (67)
Q Consensus 23 ~~l~C~a~G-~P~P~i~W~~~g~~~~~------~~~~~~~~~~g~L~I~~vq 67 (67)
+.|.|.|.| .|.|.+.|.++|..+.. ++........++|.|.+++
T Consensus 1 ~~L~C~a~~~~p~~~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~~~ 52 (76)
T cd05895 1 LVLRCETVSEYPSLRFKWFKNGKEIGAKNKPDNKIKIRKKKKSSELQISKAS 52 (76)
T ss_pred CEEEEecccCCCCCceEEEECCcccccCCCCCceEEEEeCCcEEEEEECcCC
Confidence 469999985 68999999999988742 1121112234679998864
No 99
>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1
Probab=98.67 E-value=6.6e-08 Score=51.43 Aligned_cols=51 Identities=14% Similarity=0.125 Sum_probs=38.0
Q ss_pred EEEcCCCcEEEEeEeccc-----CCCEEEEEECCccCCCceeeeeecCCeEEEEccCC
Q psy6536 15 VTLDIGATFVITCETVGV-----PTPLVSWRLNWNHIPAKCTTTSEDGVGTLTCPDIQ 67 (67)
Q Consensus 15 ~~~~~g~~~~l~C~a~G~-----P~P~i~W~~~g~~~~~~~~~~~~~~~g~L~I~~vq 67 (67)
..+.+|+++.|.|.+.+. |.|.|.|.|++..+........ ..++|.|.+++
T Consensus 5 ~~~~~g~~~~l~Cp~~~~~~~~~~~p~i~Wyk~~~~i~~~~~~~~--~~~~L~I~~v~ 60 (92)
T cd05757 5 QILFSTKGGKIVCPDLDDFKNENTLPPVQWYKDCKLLEGDRKRFV--KGSKLLIQNVT 60 (92)
T ss_pred EEEeeccCCEEECCChHHccCCCCCCcEEEeECCEECCCCccEEe--cCCEEEEeeCC
Confidence 467899999999998763 6899999999998864221111 34688888774
No 100
>smart00409 IG Immunoglobulin.
Probab=98.60 E-value=7.6e-07 Score=44.34 Aligned_cols=54 Identities=24% Similarity=0.506 Sum_probs=38.8
Q ss_pred CEEEcCCCcEEEEeEecccCCCEEEEEEC-CccCC--CceeeeeecCCeEEEEccCC
Q psy6536 14 KVTLDIGATFVITCETVGVPTPLVSWRLN-WNHIP--AKCTTTSEDGVGTLTCPDIQ 67 (67)
Q Consensus 14 ~~~~~~g~~~~l~C~a~G~P~P~i~W~~~-g~~~~--~~~~~~~~~~~g~L~I~~vq 67 (67)
...+..|+++.|.|.+.+.+.+.+.|.++ +..+. .++.........+|.|.+++
T Consensus 3 ~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~~~~~~~~~~~~~~l~i~~~~ 59 (86)
T smart00409 3 SVTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAESGRFSVSRSGSNSTLTISNVT 59 (86)
T ss_pred cEEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCCCcEEEEEcCCeeEEEEEeec
Confidence 45778999999999999999999999998 66663 23333222223567777653
No 101
>smart00410 IG_like Immunoglobulin like. IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.
Probab=98.60 E-value=7.6e-07 Score=44.34 Aligned_cols=54 Identities=24% Similarity=0.506 Sum_probs=38.8
Q ss_pred CEEEcCCCcEEEEeEecccCCCEEEEEEC-CccCC--CceeeeeecCCeEEEEccCC
Q psy6536 14 KVTLDIGATFVITCETVGVPTPLVSWRLN-WNHIP--AKCTTTSEDGVGTLTCPDIQ 67 (67)
Q Consensus 14 ~~~~~~g~~~~l~C~a~G~P~P~i~W~~~-g~~~~--~~~~~~~~~~~g~L~I~~vq 67 (67)
...+..|+++.|.|.+.+.+.+.+.|.++ +..+. .++.........+|.|.+++
T Consensus 3 ~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~~~~~~~~~~~~~~l~i~~~~ 59 (86)
T smart00410 3 SVTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAESGRFSVSRSGSNSTLTISNVT 59 (86)
T ss_pred cEEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCCCcEEEEEcCCeeEEEEEeec
Confidence 45778999999999999999999999998 66663 23333222223567777653
No 102
>KOG4222|consensus
Probab=98.47 E-value=1.8e-07 Score=66.71 Aligned_cols=43 Identities=21% Similarity=0.557 Sum_probs=38.1
Q ss_pred cCCeEEeCCCCCEEEcCCCcEEEEeEecccCCCEEEEEECCccC
Q psy6536 3 SPAYIKTNPPPKVTLDIGATFVITCETVGVPTPLVSWRLNWNHI 46 (67)
Q Consensus 3 ~~P~~~~~~~~~~~~~~g~~~~l~C~a~G~P~P~i~W~~~g~~~ 46 (67)
.+|.|++.|.+ ..+..|+.+.|.|.|.|.|.|+|.|.|+|..+
T Consensus 30 ~~p~iiehp~d-~vvs~~~patlnc~asG~ppPti~w~k~G~~~ 72 (1281)
T KOG4222|consen 30 QPPRIIEHPHD-LVVSKGEPATLNCKASGDPPPTIEWYKDGENV 72 (1281)
T ss_pred CCCceEecchh-hhccCCCCceeecCCCCCCCCceecccCCccc
Confidence 57899998865 57889999999999999999999999999654
No 103
>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=98.42 E-value=2e-06 Score=44.72 Aligned_cols=39 Identities=15% Similarity=0.203 Sum_probs=30.8
Q ss_pred EEeCCCCCEEEcCCCcEEEEeEec-ccCCCEEEEEECCccCC
Q psy6536 7 IKTNPPPKVTLDIGATFVITCETV-GVPTPLVSWRLNWNHIP 47 (67)
Q Consensus 7 ~~~~~~~~~~~~~g~~~~l~C~a~-G~P~P~i~W~~~g~~~~ 47 (67)
+++.| . ..+.+|+++.|.|.+. +.|.+.+.|.|+|..+.
T Consensus 3 ~l~~p-~-~~V~~G~~vtL~C~~~~~~~~~~~~w~k~g~~~~ 42 (83)
T cd05753 3 LLQVP-S-RVVFEGEPLVLRCHGWKNKPVYKVTYYRDGKAKK 42 (83)
T ss_pred EEECC-c-ceecCCCCEEEEeeCCCCCcceEEEEEECCeEcc
Confidence 34444 3 3788999999999995 57788999999998663
No 104
>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A ....
Probab=98.38 E-value=8.3e-07 Score=44.52 Aligned_cols=40 Identities=28% Similarity=0.605 Sum_probs=33.0
Q ss_pred CeEEeCCCCCEEEcCCCcEEEEeEecccCCCEEEEEECCccCC
Q psy6536 5 AYIKTNPPPKVTLDIGATFVITCETVGVPTPLVSWRLNWNHIP 47 (67)
Q Consensus 5 P~~~~~~~~~~~~~~g~~~~l~C~a~G~P~P~i~W~~~g~~~~ 47 (67)
|.+...+ ..+.+|+++.|.|.+.|.|.+.+.|.+++..+.
T Consensus 2 P~l~~~~---~~v~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~ 41 (80)
T PF13895_consen 2 PVLSSSP---QSVEEGDSVTLTCSVSGNPPPQVQWYKNGSPIN 41 (80)
T ss_dssp -EEEEES---SEEETTSEEEEEEEEESSSSSEEEEEETTEEEE
T ss_pred cEEEccc---eEEeCCCcEEEEEEEEcccceeeeeeeeeeeee
Confidence 6666543 367899999999999999999999999987774
No 105
>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=98.38 E-value=2.3e-06 Score=43.98 Aligned_cols=26 Identities=19% Similarity=0.502 Sum_probs=22.8
Q ss_pred EEEEeEecc-cCCCEEEEEECCccCCC
Q psy6536 23 FVITCETVG-VPTPLVSWRLNWNHIPA 48 (67)
Q Consensus 23 ~~l~C~a~G-~P~P~i~W~~~g~~~~~ 48 (67)
+.|.|.|.| .|.|.|+|+++|..+..
T Consensus 2 ~~L~C~v~g~~P~~~v~W~~~g~~l~~ 28 (82)
T cd05759 2 YNLTCRARGAKPAAEIIWFRDGEVLDG 28 (82)
T ss_pred EEEEEEEeCccCCCEEEEEECCEEccC
Confidence 689999998 69999999999987753
No 106
>KOG4222|consensus
Probab=98.37 E-value=4.3e-07 Score=64.84 Aligned_cols=64 Identities=27% Similarity=0.466 Sum_probs=47.8
Q ss_pred cCCeEEeCCCCCEEEcCCCcEEEEeEecccCCCEEEEEECCccC---C----CceeeeeecCCeEEEEccCC
Q psy6536 3 SPAYIKTNPPPKVTLDIGATFVITCETVGVPTPLVSWRLNWNHI---P----AKCTTTSEDGVGTLTCPDIQ 67 (67)
Q Consensus 3 ~~P~~~~~~~~~~~~~~g~~~~l~C~a~G~P~P~i~W~~~g~~~---~----~~~~~~~~~~~g~L~I~~vq 67 (67)
+||.|...|.+ ..+..|..+.|.|++.|.|.|.+.|.+.|.+. . ......+....|+|+|.+++
T Consensus 314 apP~f~kkp~d-q~v~lg~~vt~pc~~~gnP~PavfW~keg~q~llf~~~p~~~~~r~svs~~g~L~it~v~ 384 (1281)
T KOG4222|consen 314 APPSFGKKPRD-QKVALGGTVTFPCETLGNPPPAVFWLKEGSQDLLFSASPPSSNGRGSVSPTGTLTITNVR 384 (1281)
T ss_pred cCcccccccCc-cccccCceEEeeeecCCCCCcceEEeccCcceecccCCCCCcCccceecCCCCccccccc
Confidence 68899888755 47789999999999999999999999998753 1 11222222344689998875
No 107
>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain. IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.
Probab=98.36 E-value=4.7e-06 Score=46.75 Aligned_cols=43 Identities=16% Similarity=0.298 Sum_probs=31.7
Q ss_pred CcCCeEEeCCCCCEEEcCCCcEEEEeEeccc-CC-CEEEEEECCcc
Q psy6536 2 TSPAYIKTNPPPKVTLDIGATFVITCETVGV-PT-PLVSWRLNWNH 45 (67)
Q Consensus 2 ~~~P~~~~~~~~~~~~~~g~~~~l~C~a~G~-P~-P~i~W~~~g~~ 45 (67)
.+||.+...+.. .....|+.+.|.|.|.|. |. +.|+|+++|..
T Consensus 36 ~~~P~v~~~~~~-~~~~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~ 80 (139)
T cd05771 36 SEPPRVRLSLEK-LVSMIEEPQTLICHIAGYYPLDVQVEWTREPPG 80 (139)
T ss_pred ecCCceEEeCCC-ceeecCCcEEEEEEECCCCCCCeEEEEEECCCC
Confidence 357777665533 334478899999999996 54 48999999864
No 108
>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin. Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula
Probab=98.35 E-value=2.7e-06 Score=45.00 Aligned_cols=27 Identities=19% Similarity=0.303 Sum_probs=23.8
Q ss_pred EEEcCCCcEEEEeEecccCCCEEEEEEC
Q psy6536 15 VTLDIGATFVITCETVGVPTPLVSWRLN 42 (67)
Q Consensus 15 ~~~~~g~~~~l~C~a~G~P~P~i~W~~~ 42 (67)
+.+.+|+++.|.|.+ +.|.|.++|++.
T Consensus 6 ~~~~eG~~v~L~C~~-~~p~p~v~Wykq 32 (91)
T cd05871 6 VYGVENNSTFLECLP-KSPQASVKWLFQ 32 (91)
T ss_pred EEEecCCcEEEEEEC-CCCCceEEEEEE
Confidence 467899999999996 699999999984
No 109
>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins. IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=98.35 E-value=6.2e-06 Score=44.17 Aligned_cols=33 Identities=12% Similarity=0.384 Sum_probs=28.7
Q ss_pred CCCCEEEcCCCcEEEEeEecccCCCEEEEEECC
Q psy6536 11 PPPKVTLDIGATFVITCETVGVPTPLVSWRLNW 43 (67)
Q Consensus 11 ~~~~~~~~~g~~~~l~C~a~G~P~P~i~W~~~g 43 (67)
++..+.+.+|+++.|.|.+.+.+.+.+.|.+..
T Consensus 4 ~~~~v~~~~G~~v~L~C~~~~~~~~~v~W~k~~ 36 (109)
T cd04983 4 SPQSLSVQEGENVTLNCNYSTSTFYYLFWYRQY 36 (109)
T ss_pred cCCceEEcCCCCEEEEEEECCCCccEEEEEEEC
Confidence 345678999999999999999999999999753
No 110
>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain. IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=98.31 E-value=7.4e-06 Score=44.24 Aligned_cols=33 Identities=12% Similarity=0.252 Sum_probs=27.9
Q ss_pred eCCCCCEEEcCCCcEEEEeEecccCCCEEEEEECC
Q psy6536 9 TNPPPKVTLDIGATFVITCETVGVPTPLVSWRLNW 43 (67)
Q Consensus 9 ~~~~~~~~~~~g~~~~l~C~a~G~P~P~i~W~~~g 43 (67)
+.| ..+.+.+|+++.|.|.+.+ +.+.+.|.|..
T Consensus 3 Q~p-~~~~v~~G~~v~l~C~~~~-~~~~v~Wykq~ 35 (110)
T cd05899 3 QSP-RYLIKGRGQSVTLRCSQTS-GHDNMYWYRQD 35 (110)
T ss_pred ECC-CceEEcCCCcEEEEEEECC-CCCEEEEEEEC
Confidence 444 4578999999999999999 88999998863
No 111
>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a
Probab=98.31 E-value=9.1e-06 Score=43.58 Aligned_cols=55 Identities=9% Similarity=0.116 Sum_probs=40.0
Q ss_pred CCEEEcCCCcEEEEeEecccCCCEEEEEECCccC----------CCceeeeeec-CCeEEEEccCC
Q psy6536 13 PKVTLDIGATFVITCETVGVPTPLVSWRLNWNHI----------PAKCTTTSED-GVGTLTCPDIQ 67 (67)
Q Consensus 13 ~~~~~~~g~~~~l~C~a~G~P~P~i~W~~~g~~~----------~~~~~~~~~~-~~g~L~I~~vq 67 (67)
+++.+.+|+++.|.|.+.+.....+.|.+.+..+ ++|+...... ..-+|+|+++|
T Consensus 5 ~nvtv~~G~ta~L~C~v~~~~~~~v~w~~~~~~~i~~~~~~~~~d~Rf~~~~~~~~~~tL~I~~vq 70 (95)
T cd05881 5 EDVTVVEGEVAIISCRVKNNDDSVIQLLNPNRQTIYFRDVRPLKDSRFQLVNFSSNELRVSLSNVS 70 (95)
T ss_pred CceEEcCCCcEEEEEEEccCCccEEEEEecCCcEEEecCccccCCcCEEEEeCCCCEEEEEECcCC
Confidence 5678999999999999999988888898777543 2355433212 22369999886
No 112
>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel
Probab=98.30 E-value=4.6e-06 Score=43.44 Aligned_cols=26 Identities=19% Similarity=0.523 Sum_probs=23.1
Q ss_pred EEEEeEeccc-CCCEEEEEECCccCCC
Q psy6536 23 FVITCETVGV-PTPLVSWRLNWNHIPA 48 (67)
Q Consensus 23 ~~l~C~a~G~-P~P~i~W~~~g~~~~~ 48 (67)
+.|.|.|.|. |.+.|+|+++|..+..
T Consensus 2 ~~LtC~a~g~~P~~~ItW~k~g~~l~~ 28 (83)
T cd07705 2 AKLRCTSSGSKPAANIKWRKGDQELEG 28 (83)
T ss_pred EEEEEEecCccCCCEeEEEECCEECCC
Confidence 6799999996 9999999999988754
No 113
>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively). Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel
Probab=98.29 E-value=4.8e-06 Score=43.07 Aligned_cols=27 Identities=19% Similarity=0.482 Sum_probs=23.1
Q ss_pred cEEEEeEeccc-CCCEEEEEECCccCCC
Q psy6536 22 TFVITCETVGV-PTPLVSWRLNWNHIPA 48 (67)
Q Consensus 22 ~~~l~C~a~G~-P~P~i~W~~~g~~~~~ 48 (67)
.+.|.|.|.|. |.|.|+|+++|..+..
T Consensus 1 ~~~L~C~~~~~~P~~~v~W~~~~~~l~~ 28 (82)
T cd05761 1 EVELTCTSSGSKPAATIRWFKGDKELKG 28 (82)
T ss_pred CEEEEEEecCcCcCCeEEEEECCEEccC
Confidence 36899999886 9999999999988753
No 114
>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C ....
Probab=98.29 E-value=7.8e-07 Score=43.97 Aligned_cols=35 Identities=37% Similarity=0.802 Sum_probs=26.8
Q ss_pred CCeEEeCCCCCEEEcCCCcEEEEeEecccC-CCEEEEE
Q psy6536 4 PAYIKTNPPPKVTLDIGATFVITCETVGVP-TPLVSWR 40 (67)
Q Consensus 4 ~P~~~~~~~~~~~~~~g~~~~l~C~a~G~P-~P~i~W~ 40 (67)
+|.|...+.. .. ..+..+.|.|.|.|.| .+.++|.
T Consensus 1 kP~I~~~~~~-~~-~~~~~~~l~C~~~~~~~~~~~~W~ 36 (75)
T PF13927_consen 1 KPQISVPPPP-VV-TSGGSVTLTCSAEGGPPPPSISWY 36 (75)
T ss_dssp ESEEEEESTS-EE-ETTEEEEEEEEESSEESSEEEEEE
T ss_pred CCEEEEcCCC-cE-eeceeEEEEEEEccccCCeEEEEE
Confidence 5788776643 23 3444499999999999 9999999
No 115
>cd00098 IgC Immunoglobulin Constant domain. IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.
Probab=98.26 E-value=3.8e-06 Score=43.92 Aligned_cols=31 Identities=26% Similarity=0.563 Sum_probs=26.6
Q ss_pred cCCCcEEEEeEeccc-C-CCEEEEEECCccCCC
Q psy6536 18 DIGATFVITCETVGV-P-TPLVSWRLNWNHIPA 48 (67)
Q Consensus 18 ~~g~~~~l~C~a~G~-P-~P~i~W~~~g~~~~~ 48 (67)
..|+.+.|.|.|.|. | .+.|+|.++|..+..
T Consensus 11 ~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~~~ 43 (95)
T cd00098 11 LLGGSVTLTCLATGFYPPDITVTWLKNGKELTS 43 (95)
T ss_pred HcCCCeEEEEEEeeEECCCcEEEEEECCEECCC
Confidence 468899999999998 6 468999999988754
No 116
>KOG4221|consensus
Probab=98.25 E-value=4e-06 Score=60.42 Aligned_cols=63 Identities=25% Similarity=0.368 Sum_probs=48.0
Q ss_pred cCCeEEeCCCCCEEEcCCCcEEEEeEecccCCCEEEEEECCccCCCceeeeeecCCeEEEEccCC
Q psy6536 3 SPAYIKTNPPPKVTLDIGATFVITCETVGVPTPLVSWRLNWNHIPAKCTTTSEDGVGTLTCPDIQ 67 (67)
Q Consensus 3 ~~P~~~~~~~~~~~~~~g~~~~l~C~a~G~P~P~i~W~~~g~~~~~~~~~~~~~~~g~L~I~~vq 67 (67)
..+.|...+. +.++..|+++.|.|++.|.|.|.|.|.++..+++..-.+. ....|.|.|.++|
T Consensus 139 ~~~~f~~~~~-~~t~~~g~ta~f~c~vn~e~~p~i~w~kn~~pl~~~~r~i-~lpsG~L~I~~~q 201 (1381)
T KOG4221|consen 139 GLADFALQPE-STTLLYGQTALFSCEVNAEPVPTIMWLKNDQPLPLDSRVI-VLPSGALEISGLQ 201 (1381)
T ss_pred ccCccccCcc-ceeEecCCcEEEEEEEcCccCceeEEecccccccCCCcEE-EcCCCcEEecccc
Confidence 3456666554 4689999999999999999999999999999776422222 2345889998876
No 117
>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=98.22 E-value=1.8e-05 Score=42.49 Aligned_cols=35 Identities=14% Similarity=0.473 Sum_probs=28.6
Q ss_pred EEeCCCCCEEEcCCCcEEEEeEecccC-CCEEEEEEC
Q psy6536 7 IKTNPPPKVTLDIGATFVITCETVGVP-TPLVSWRLN 42 (67)
Q Consensus 7 ~~~~~~~~~~~~~g~~~~l~C~a~G~P-~P~i~W~~~ 42 (67)
+.+.| ..+.+.+|+++.|.|.+.+.. ...+.|.|.
T Consensus 3 v~Q~p-~~~~v~~G~~v~L~C~~~~~~~~~~~~Wyrq 38 (106)
T cd04980 3 LTQSP-ATLSVSPGESATISCKASQSVSSNYLAWYQQ 38 (106)
T ss_pred EEECC-CcEEECCCCCEEEEEEECCCCCCCcEEEEEE
Confidence 34555 457899999999999999877 789999875
No 118
>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain. IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=98.22 E-value=1.5e-05 Score=43.31 Aligned_cols=30 Identities=20% Similarity=0.484 Sum_probs=26.7
Q ss_pred CCEEEcCCCcEEEEeEecc--cCCCEEEEEEC
Q psy6536 13 PKVTLDIGATFVITCETVG--VPTPLVSWRLN 42 (67)
Q Consensus 13 ~~~~~~~g~~~~l~C~a~G--~P~P~i~W~~~ 42 (67)
..+.+.+|+++.|.|.+.+ .+.+.+.|.+.
T Consensus 6 ~~~~~~~G~~v~l~C~~~~~~~~~~~v~Wyrq 37 (116)
T cd04982 6 LSITREESKSVTISCKVSGIDFSTTYIHWYRQ 37 (116)
T ss_pred CeEEeCCCCCEEEEEEEeCCCccccEEEEEEE
Confidence 4568899999999999988 78999999985
No 119
>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.
Probab=98.19 E-value=1.4e-05 Score=42.16 Aligned_cols=39 Identities=15% Similarity=0.428 Sum_probs=27.9
Q ss_pred CCeEEeCCCCCEEEcCCCcEEEEeEeccc-CCC-EEEEEECCccC
Q psy6536 4 PAYIKTNPPPKVTLDIGATFVITCETVGV-PTP-LVSWRLNWNHI 46 (67)
Q Consensus 4 ~P~~~~~~~~~~~~~~g~~~~l~C~a~G~-P~P-~i~W~~~g~~~ 46 (67)
||.+...+... .++.+.|.|.|.|. |.+ .++|.++|..+
T Consensus 2 pP~v~v~~~~~----~~~~~~L~C~a~gF~P~~i~v~W~~~g~~~ 42 (93)
T cd07698 2 PPEVRVTRKRA----PDGSLTLSCHATGFYPRDIEVTWLRDGEDS 42 (93)
T ss_pred CCEEEEEecCC----CCCcEEEEEEEEEEeCCCcEEEEEECCEEC
Confidence 66665443322 17789999999995 655 88999999643
No 120
>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.
Probab=98.14 E-value=1.4e-05 Score=41.64 Aligned_cols=26 Identities=15% Similarity=0.431 Sum_probs=22.7
Q ss_pred cEEEEeEec-ccCCCEEEEEECCccCC
Q psy6536 22 TFVITCETV-GVPTPLVSWRLNWNHIP 47 (67)
Q Consensus 22 ~~~l~C~a~-G~P~P~i~W~~~g~~~~ 47 (67)
.+.|.|.+. |+|.|.|+|++++.++.
T Consensus 1 ~~~L~C~s~~skP~a~i~W~k~~~~l~ 27 (80)
T cd05885 1 EVELTCLSPRSKPAATLRWYRDRKELK 27 (80)
T ss_pred CEEEEEeCCCccCCCeEEEEECCEECC
Confidence 378999877 68999999999999885
No 121
>cd07699 IgC_L Immunoglobulin Constant domain. IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=98.13 E-value=7.5e-06 Score=44.02 Aligned_cols=45 Identities=16% Similarity=0.385 Sum_probs=31.4
Q ss_pred CCeEEeCCCCCEEEcCCCcEEEEeEecc-cC-CCEEEEEECCccCCC
Q psy6536 4 PAYIKTNPPPKVTLDIGATFVITCETVG-VP-TPLVSWRLNWNHIPA 48 (67)
Q Consensus 4 ~P~~~~~~~~~~~~~~g~~~~l~C~a~G-~P-~P~i~W~~~g~~~~~ 48 (67)
||.+...++.......++.+.|.|.|.| .| .-.|+|++||..+..
T Consensus 1 pP~V~v~~p~~~~~~~~~~~~L~C~~~gfyP~~i~v~W~~~g~~~~~ 47 (100)
T cd07699 1 APSVTIFPPSSEELEKSGKATLVCLINDFYPGFATVQWKVDGATVSS 47 (100)
T ss_pred CCeEEEECCCHHHHccCCCcEEEEEEEeEECCCCEEEEEECCEECcc
Confidence 4555443333333446788999999999 56 557899999998753
No 122
>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge
Probab=98.13 E-value=1.1e-05 Score=42.07 Aligned_cols=27 Identities=15% Similarity=0.283 Sum_probs=22.3
Q ss_pred CCcEEEEeEecccCCC--EEEEEECCccC
Q psy6536 20 GATFVITCETVGVPTP--LVSWRLNWNHI 46 (67)
Q Consensus 20 g~~~~l~C~a~G~P~P--~i~W~~~g~~~ 46 (67)
|+++.|.|.|.|.|.| .+.|.+++...
T Consensus 1 Ge~~~L~C~~~~~~~~~~~~~W~~p~~~~ 29 (86)
T cd05862 1 GEKLVLNCTARTELNVGIDFQWDYPGKKE 29 (86)
T ss_pred CCcEEEEEEEEeCCCCcEEEEEEcCCccc
Confidence 7899999999997755 67999888644
No 123
>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.
Probab=98.10 E-value=1.9e-05 Score=41.21 Aligned_cols=26 Identities=31% Similarity=0.561 Sum_probs=23.0
Q ss_pred EEEEeEecc-cCCCEEEEEECCccCCC
Q psy6536 23 FVITCETVG-VPTPLVSWRLNWNHIPA 48 (67)
Q Consensus 23 ~~l~C~a~G-~P~P~i~W~~~g~~~~~ 48 (67)
+.|.|.|.| .|...|+|+++|..+.+
T Consensus 2 ~~LtC~a~gf~P~~~itW~kng~~l~~ 28 (83)
T cd05884 2 MQLTCKTSGSKPAADIRWFKNDKEIKD 28 (83)
T ss_pred EEEEEEeCCccCCCEEEEEECCEECcC
Confidence 679999998 78899999999998754
No 124
>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain. IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be
Probab=98.06 E-value=3.6e-05 Score=40.98 Aligned_cols=31 Identities=19% Similarity=0.419 Sum_probs=25.7
Q ss_pred cCCCcEEEEeEecc-cCCC-EEEEEECCccCCC
Q psy6536 18 DIGATFVITCETVG-VPTP-LVSWRLNWNHIPA 48 (67)
Q Consensus 18 ~~g~~~~l~C~a~G-~P~P-~i~W~~~g~~~~~ 48 (67)
..|+.+.|.|.|.| .|.. .++|.++|..+..
T Consensus 12 ~~~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~ 44 (94)
T cd05766 12 SLSHPHLLVCHVWGFYPPEITVKWFKNGQEETE 44 (94)
T ss_pred cCCCCeEEEEEEeeecCCCCEEEEEECCeecCC
Confidence 46889999999999 5655 7799999988753
No 125
>cd00099 IgV Immunoglobulin variable domain (IgV). IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.02 E-value=5.2e-05 Score=40.10 Aligned_cols=28 Identities=14% Similarity=0.408 Sum_probs=24.7
Q ss_pred EEcCCCcEEEEeEeccc-CCCEEEEEECC
Q psy6536 16 TLDIGATFVITCETVGV-PTPLVSWRLNW 43 (67)
Q Consensus 16 ~~~~g~~~~l~C~a~G~-P~P~i~W~~~g 43 (67)
.+.+|+++.|.|...+. +...+.|.+..
T Consensus 2 ~v~~G~~v~L~C~~~~~~~~~~v~W~k~~ 30 (105)
T cd00099 2 SVSEGESVTLSCTYSGSFSSYYIFWYRQK 30 (105)
T ss_pred eecCCCCEEEEEEEeCCcCcceEEEEEEC
Confidence 57799999999999997 78999999854
No 126
>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain. IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.
Probab=98.02 E-value=2.2e-05 Score=43.46 Aligned_cols=44 Identities=20% Similarity=0.505 Sum_probs=30.3
Q ss_pred CCeEEeCCCCCEEEcCCCcEEEEeEecc-cCCC-EEEEEECCccCC
Q psy6536 4 PAYIKTNPPPKVTLDIGATFVITCETVG-VPTP-LVSWRLNWNHIP 47 (67)
Q Consensus 4 ~P~~~~~~~~~~~~~~g~~~~l~C~a~G-~P~P-~i~W~~~g~~~~ 47 (67)
+|.+..-++....+..++.+.|.|.|.| .|.. .|+|++||..+.
T Consensus 2 ~P~V~v~~ps~~e~~~~~~~tL~Cla~gFyP~~I~V~W~kng~~l~ 47 (115)
T cd05769 2 PPTVAIFPPSEAEIRNKRKATLVCLATGFYPDHVSLSWKVNGKEVT 47 (115)
T ss_pred CCEEEEECcChHHhccCCCcEEEEEEEeEeCCCcEEEEEECCEECC
Confidence 4544433333334446678999999999 4654 789999998775
No 127
>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B. Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.
Probab=98.00 E-value=3.3e-05 Score=40.67 Aligned_cols=33 Identities=21% Similarity=0.334 Sum_probs=29.4
Q ss_pred CEEEcCCCcEEEEeEecccCCCEEEEEECCccCC
Q psy6536 14 KVTLDIGATFVITCETVGVPTPLVSWRLNWNHIP 47 (67)
Q Consensus 14 ~~~~~~g~~~~l~C~a~G~P~P~i~W~~~g~~~~ 47 (67)
+.++.+|+++.|.|...+. ...+.|.++|..+.
T Consensus 5 ~~tv~~g~~v~L~C~~~s~-~A~v~W~~ng~~l~ 37 (85)
T cd05872 5 NRTVAPGADVVLPCQLRSN-LASPVWLFNGTPLN 37 (85)
T ss_pred EEEEecCCCEEEECCCCCC-CccEEEEECCcccC
Confidence 4688999999999999995 77999999999874
No 128
>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins. Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),
Probab=97.91 E-value=0.0001 Score=38.65 Aligned_cols=40 Identities=8% Similarity=0.124 Sum_probs=32.2
Q ss_pred CCeEEeCCCCCEEEcCCCcEEEEeEecccCCCEEEEEECCccC
Q psy6536 4 PAYIKTNPPPKVTLDIGATFVITCETVGVPTPLVSWRLNWNHI 46 (67)
Q Consensus 4 ~P~~~~~~~~~~~~~~g~~~~l~C~a~G~P~P~i~W~~~g~~~ 46 (67)
.|.+...|. ..+..|++|.|.|.+. .|...+.|.++|...
T Consensus 2 kP~L~a~p~--~vV~~G~~VtL~C~~~-~~~~~f~l~k~g~~~ 41 (91)
T cd05751 2 KPSLWAEPS--SVVPLGKPVTLRCQGP-YGAVEYRLYREGSTF 41 (91)
T ss_pred CCEEEecCC--CccCCCCcEEEEEecC-CCCCEEEEEECCCCc
Confidence 366766653 3688999999999986 689999999998754
No 129
>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain. IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating
Probab=97.90 E-value=6.8e-05 Score=41.18 Aligned_cols=32 Identities=28% Similarity=0.496 Sum_probs=26.2
Q ss_pred EEcCCCcEEEEeEecc-cCC-CEEEEEECCccCC
Q psy6536 16 TLDIGATFVITCETVG-VPT-PLVSWRLNWNHIP 47 (67)
Q Consensus 16 ~~~~g~~~~l~C~a~G-~P~-P~i~W~~~g~~~~ 47 (67)
....|+.+.|.|.|.| .|. -.++|++||..+.
T Consensus 17 ~~~~g~~~tL~C~a~gF~P~~i~v~W~kng~~~~ 50 (111)
T cd05772 17 RANPGQSVNFTCSAHGFSPRDITVKWLKNGNELS 50 (111)
T ss_pred ccCCCCCEEEEEEEeeEeCCCCEEEEEECCEECc
Confidence 3457888999999999 453 5899999999875
No 130
>smart00407 IGc1 Immunoglobulin C-Type.
Probab=97.82 E-value=0.00011 Score=37.31 Aligned_cols=25 Identities=24% Similarity=0.501 Sum_probs=20.8
Q ss_pred EEEEeEeccc-CC-CEEEEEECCccCC
Q psy6536 23 FVITCETVGV-PT-PLVSWRLNWNHIP 47 (67)
Q Consensus 23 ~~l~C~a~G~-P~-P~i~W~~~g~~~~ 47 (67)
+.|.|.|.|. |. ..|+|.++|..+.
T Consensus 2 ~~L~C~a~gf~P~~i~v~W~k~g~~~~ 28 (75)
T smart00407 2 ATLVCLVSGFYPPDITVTWLRNGQEVT 28 (75)
T ss_pred eEEEEEEEeEeCCCCEEEEEECCEECC
Confidence 6899999997 54 6999999998653
No 131
>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....
Probab=97.81 E-value=3e-05 Score=40.22 Aligned_cols=40 Identities=28% Similarity=0.562 Sum_probs=27.9
Q ss_pred CeEEeCCCCCEEEcCCCcEEEEeE-ecccCCCEEEEEECCccC
Q psy6536 5 AYIKTNPPPKVTLDIGATFVITCE-TVGVPTPLVSWRLNWNHI 46 (67)
Q Consensus 5 P~~~~~~~~~~~~~~g~~~~l~C~-a~G~P~P~i~W~~~g~~~ 46 (67)
|.|.... .. ....|+.+.+.|. ..|.|.|.|+|..+++.+
T Consensus 1 p~I~~~~-~~-~~~~~~~~~~~C~s~~~~P~~~i~W~~~~~~~ 41 (89)
T PF08205_consen 1 PEITPNP-SL-LEGEGEEVTLTCSSSGGYPPPQITWYLDGGPV 41 (89)
T ss_dssp EEEEEEC-SE-EESSTEEEEEEEEEEEEBS-EEEEEEETTCEE
T ss_pred CEeeCCC-ee-EcccceEEEEEEEeCCeECCeEEEEEECCCce
Confidence 4555433 22 3333789999995 557999999999999877
No 132
>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins. Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf
Probab=97.77 E-value=0.00016 Score=37.48 Aligned_cols=26 Identities=8% Similarity=0.252 Sum_probs=22.8
Q ss_pred CCcEEEEeEecccCCCEEEEEECCcc
Q psy6536 20 GATFVITCETVGVPTPLVSWRLNWNH 45 (67)
Q Consensus 20 g~~~~l~C~a~G~P~P~i~W~~~g~~ 45 (67)
|++|.|.|.....+...|.|.++...
T Consensus 1 G~~VtL~c~~~~~~~~~i~W~~~~~~ 26 (92)
T cd05741 1 GESVTLPVSNLPENLQEITWYKGKDK 26 (92)
T ss_pred CCcEEEEcccCCCCCEEEEEECCCCC
Confidence 78999999999888889999988644
No 133
>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom
Probab=97.76 E-value=0.00018 Score=38.42 Aligned_cols=46 Identities=13% Similarity=0.155 Sum_probs=30.0
Q ss_pred cCCCcEEEEeEecc-cCC-CEEEEEECCccCCCcee--eeeecCCeEEEE
Q psy6536 18 DIGATFVITCETVG-VPT-PLVSWRLNWNHIPAKCT--TTSEDGVGTLTC 63 (67)
Q Consensus 18 ~~g~~~~l~C~a~G-~P~-P~i~W~~~g~~~~~~~~--~~~~~~~g~L~I 63 (67)
..++.+.|.|.|.| .|. =.++|.+||..+.+... ....+++|++.+
T Consensus 13 ~~~~~~tL~C~a~gFyP~~I~v~W~~~g~~~~~~~~~~~~~~~~Dgty~~ 62 (94)
T cd05767 13 ELGEPNTLICFVDNFFPPVLNVTWLKNGVPVTDGVSETRYYPRQDLSFQK 62 (94)
T ss_pred cCCCCeEEEEEEEEEECCcCEEEEEECCeEccCceEEeeeEeCCCCcEEE
Confidence 35667899999999 563 46789999998754221 112344565544
No 134
>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain. IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=97.70 E-value=0.00024 Score=37.53 Aligned_cols=28 Identities=25% Similarity=0.406 Sum_probs=23.7
Q ss_pred EEcCCCcEEEEeEeccc--CCCEEEEEECC
Q psy6536 16 TLDIGATFVITCETVGV--PTPLVSWRLNW 43 (67)
Q Consensus 16 ~~~~g~~~~l~C~a~G~--P~P~i~W~~~g 43 (67)
.+.+|+++.|.|.+.+. ....+.|.+..
T Consensus 2 ~v~~G~~v~l~C~~~~~~~~~~~i~Wy~q~ 31 (98)
T cd04984 2 SVSPGETVTITCTGSSGNISGNYVNWYQQK 31 (98)
T ss_pred ccCCCCCEEEEEEEcCCCcCCCCEEEEEEC
Confidence 46799999999999886 67889998654
No 135
>PHA02826 IL-1 receptor-like protein; Provisional
Probab=97.70 E-value=0.00014 Score=44.31 Aligned_cols=33 Identities=18% Similarity=0.252 Sum_probs=27.5
Q ss_pred CCEEEcCCCcEEEEeEecccCC-----------CEEEEEECCcc
Q psy6536 13 PKVTLDIGATFVITCETVGVPT-----------PLVSWRLNWNH 45 (67)
Q Consensus 13 ~~~~~~~g~~~~l~C~a~G~P~-----------P~i~W~~~g~~ 45 (67)
....+.+|+++.|.|.+.+.|. +.|.|.|.+..
T Consensus 30 ~~~~v~eGe~v~L~C~~~~~~~~~~~~~~~~~~~~V~W~k~~s~ 73 (227)
T PHA02826 30 TPVYAKFGDPMVLLCTGKHYKKSIFFDKTFITSYNVTWSKTDSL 73 (227)
T ss_pred ceEEecCCCCEEEEccccccccccccccccCCCccEEEEeCCeE
Confidence 3467899999999999999765 49999998754
No 136
>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin. IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.
Probab=97.67 E-value=0.00022 Score=38.06 Aligned_cols=45 Identities=24% Similarity=0.216 Sum_probs=29.6
Q ss_pred cCCCcEEEEeEeccc-C-CCEEEEEECCccCCCceee--eeecCCeEEEE
Q psy6536 18 DIGATFVITCETVGV-P-TPLVSWRLNWNHIPAKCTT--TSEDGVGTLTC 63 (67)
Q Consensus 18 ~~g~~~~l~C~a~G~-P-~P~i~W~~~g~~~~~~~~~--~~~~~~g~L~I 63 (67)
..|....|.|.|.|. | .=.++|++||..+. .... ...+++|++.+
T Consensus 13 ~~g~~~~L~C~a~gFyP~~i~v~W~~dg~~~~-~~~~~~~~p~~d~tyq~ 61 (93)
T cd05770 13 ENGKPNVLNCYVTGFHPPDIEIRLLKNGVKIP-KVEQSDLSFSKDWTFYL 61 (93)
T ss_pred cCCCceEEEEEEEEEeCCCCEEEEEECCEECC-CcEECcEEECCCCCEEE
Confidence 456677999999994 4 34668999998875 2221 12344566554
No 137
>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=97.65 E-value=5.4e-05 Score=40.90 Aligned_cols=32 Identities=28% Similarity=0.545 Sum_probs=25.0
Q ss_pred EEcCCCcEEEEeEeccc-CCC-EEEEEECCccCC
Q psy6536 16 TLDIGATFVITCETVGV-PTP-LVSWRLNWNHIP 47 (67)
Q Consensus 16 ~~~~g~~~~l~C~a~G~-P~P-~i~W~~~g~~~~ 47 (67)
.+..|+.+.|.|.|.|. |.. .++|.++|..+.
T Consensus 12 ~~~~~~~~tL~C~a~gFyP~~i~v~W~k~g~~~~ 45 (102)
T cd05768 12 ELSLQETATLTCLVKGFSPSDIFVKWLQNGQPLS 45 (102)
T ss_pred HhCcCCceEEEEEEeeEeCCCCEEEEEECCEECC
Confidence 44567889999999995 443 469999998774
No 138
>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.
Probab=97.64 E-value=0.00021 Score=38.67 Aligned_cols=32 Identities=16% Similarity=0.346 Sum_probs=27.8
Q ss_pred EEcCCCcEEEEeEecc-cCCCE--EEEEECCccCC
Q psy6536 16 TLDIGATFVITCETVG-VPTPL--VSWRLNWNHIP 47 (67)
Q Consensus 16 ~~~~g~~~~l~C~a~G-~P~P~--i~W~~~g~~~~ 47 (67)
.+.+|+.+.|.|.+.| .|.+. |.|++.+..+.
T Consensus 12 ~~~eG~~~tL~C~v~g~~P~a~L~i~W~rG~~~l~ 46 (100)
T cd05755 12 WQPVGKNYTLQCDVPGVAPRQNLTVVLLRGNETLS 46 (100)
T ss_pred cccCCCcEEEEEEEcCcCCCCcEEEEEeeCCEEcc
Confidence 4679999999999997 78887 69999998874
No 139
>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=97.61 E-value=0.00017 Score=38.67 Aligned_cols=53 Identities=13% Similarity=0.083 Sum_probs=35.2
Q ss_pred EEEcCCCcEEEEeEe-cc----cCCCEEEEEECCccCCCce-eeeeecCCeEEEEccCC
Q psy6536 15 VTLDIGATFVITCET-VG----VPTPLVSWRLNWNHIPAKC-TTTSEDGVGTLTCPDIQ 67 (67)
Q Consensus 15 ~~~~~g~~~~l~C~a-~G----~P~P~i~W~~~g~~~~~~~-~~~~~~~~g~L~I~~vq 67 (67)
..+..|.+..|.|.- .+ .+.|.|+|.|++..+.... ......+.+.|.|.+|.
T Consensus 5 ~~~~~~~~~~l~Cp~~~~f~~~~~~~~v~WYKd~~~l~~~~~~~~~~~~~~~L~I~~v~ 63 (95)
T cd05897 5 QILFTSTSGKLVCPDLSDFTINRTDVELQWYKDSVLLDKDNEKFYSLKGSTYLHIIDVS 63 (95)
T ss_pred eEeccccCcEEECCCHHHcccCCCCCcEEEccCCEECcCCCcceEecCCCCEEEEEEcC
Confidence 356788999999973 33 4788999999998885311 11121234568887763
No 140
>KOG4194|consensus
Probab=97.60 E-value=6.6e-05 Score=51.82 Aligned_cols=42 Identities=21% Similarity=0.400 Sum_probs=35.7
Q ss_pred CCeEEeCCCCCEEEcCCCcEEEEeEecccCC-CEEEEEECCccC
Q psy6536 4 PAYIKTNPPPKVTLDIGATFVITCETVGVPT-PLVSWRLNWNHI 46 (67)
Q Consensus 4 ~P~~~~~~~~~~~~~~g~~~~l~C~a~G~P~-P~i~W~~~g~~~ 46 (67)
-|.|+.+ -+...|..|+++.|.|.|.|.|. |++.|.|+++++
T Consensus 706 ~p~f~~P-L~~~~V~~get~vlqC~a~~~~a~pr~~W~k~d~pi 748 (873)
T KOG4194|consen 706 TPSFSIP-LEDQLVVVGETLVLQCLAEGAPADPRLEWFKEDKPI 748 (873)
T ss_pred CCccccc-ccceEEEecceEEEEEecCCCCCCccccccCCCCce
Confidence 4666654 35568899999999999999998 999999999886
No 141
>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....
Probab=97.59 E-value=0.00053 Score=35.28 Aligned_cols=31 Identities=26% Similarity=0.618 Sum_probs=25.4
Q ss_pred cCCCcEEEEeEecc-cCCC-EEEEEECCccCCC
Q psy6536 18 DIGATFVITCETVG-VPTP-LVSWRLNWNHIPA 48 (67)
Q Consensus 18 ~~g~~~~l~C~a~G-~P~P-~i~W~~~g~~~~~ 48 (67)
..++.+.|.|.|.| .|.. .|+|.++|..+..
T Consensus 6 ~~~~~~~L~C~v~~f~P~~i~v~W~~~~~~~~~ 38 (83)
T PF07654_consen 6 ELGGSVTLTCLVSGFYPKDITVTWLKNGKEVTE 38 (83)
T ss_dssp HSTSEEEEEEEEEEEBSSTEEEEEEETTEEETT
T ss_pred cCCCCEEEEEEEEEEECCCcEEEEEeccceeee
Confidence 35889999999999 5655 6899999998754
No 142
>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=97.56 E-value=0.00044 Score=38.00 Aligned_cols=24 Identities=21% Similarity=0.612 Sum_probs=19.7
Q ss_pred CCCcEEEEeEecccC------------CCEEEEEEC
Q psy6536 19 IGATFVITCETVGVP------------TPLVSWRLN 42 (67)
Q Consensus 19 ~g~~~~l~C~a~G~P------------~P~i~W~~~ 42 (67)
.|+++.|.|.-.... .+.|.|.|.
T Consensus 1 ~G~~VtLpC~~~~~~~~~~~~~~~~~~~~~I~W~k~ 36 (112)
T cd05900 1 LGSSLLIPCYFQDPIAKDPGAPTVAPLSPRIKWSFI 36 (112)
T ss_pred CCCcEEEeeEEeCCcCccccccccCCCCCEEEEEEe
Confidence 489999999887653 579999985
No 143
>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=97.56 E-value=0.00012 Score=39.16 Aligned_cols=30 Identities=20% Similarity=0.376 Sum_probs=24.2
Q ss_pred EEcCCCcEEEEeEeccc--C-CCEEEEEECCcc
Q psy6536 16 TLDIGATFVITCETVGV--P-TPLVSWRLNWNH 45 (67)
Q Consensus 16 ~~~~g~~~~l~C~a~G~--P-~P~i~W~~~g~~ 45 (67)
.+..|+.+.|.|.|.|. | .-.|+|.|+|+.
T Consensus 10 ~l~~~~~~tLtC~v~gf~yP~~i~v~W~r~~~~ 42 (96)
T cd07696 10 QLLLTKSVKLTCLVTNLTSPEGVNVTWTRGSGE 42 (96)
T ss_pred HhccCCCeEEEEEEeCCCCCCCcEEEEEECCeE
Confidence 45678999999999999 5 346799999753
No 144
>PHA02785 IL-beta-binding protein; Provisional
Probab=97.53 E-value=0.00028 Score=44.87 Aligned_cols=30 Identities=10% Similarity=0.159 Sum_probs=26.5
Q ss_pred EEcCCCcEEEEeEe-----cccCCCEEEEEECCcc
Q psy6536 16 TLDIGATFVITCET-----VGVPTPLVSWRLNWNH 45 (67)
Q Consensus 16 ~~~~g~~~~l~C~a-----~G~P~P~i~W~~~g~~ 45 (67)
.+.+|+.+.|.|.+ .|.|.|.|+|.|+|..
T Consensus 37 ~~~~ge~~~l~C~~~~~~~~g~p~~~i~W~K~g~~ 71 (326)
T PHA02785 37 MELENEPVILPCPQINTLSSGYNILDILWEKRGAD 71 (326)
T ss_pred hhhcCCCEEEECCCccccccCCCCceEEEEECCCc
Confidence 45689999999997 7999999999999864
No 145
>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.
Probab=97.50 E-value=0.00043 Score=36.23 Aligned_cols=27 Identities=11% Similarity=0.434 Sum_probs=22.9
Q ss_pred cEEEEeEecc-cCCCEEEEEECCccCCC
Q psy6536 22 TFVITCETVG-VPTPLVSWRLNWNHIPA 48 (67)
Q Consensus 22 ~~~l~C~a~G-~P~P~i~W~~~g~~~~~ 48 (67)
.+.|.|.+.| .|.+.|+|.+++.++..
T Consensus 1 ~~~L~C~s~gSkP~A~I~W~k~~~~l~~ 28 (82)
T cd05883 1 EIELNCTAMASKPAATIRWFKGNKELTG 28 (82)
T ss_pred CEEEEEEecCCCCCCEEEEEECCEECcC
Confidence 3689999987 69999999999988853
No 146
>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.
Probab=97.43 E-value=0.00075 Score=36.69 Aligned_cols=34 Identities=15% Similarity=0.314 Sum_probs=30.6
Q ss_pred CCEEEcCCCcEEEEeEecccCCCE-EEEEECCccC
Q psy6536 13 PKVTLDIGATFVITCETVGVPTPL-VSWRLNWNHI 46 (67)
Q Consensus 13 ~~~~~~~g~~~~l~C~a~G~P~P~-i~W~~~g~~~ 46 (67)
....+.+|+++.|.|.....|.|. +.|.+++..+
T Consensus 11 ~~~~v~~gE~~~L~V~ieAYP~p~~~~W~~~~~~l 45 (101)
T cd05860 11 TTIFVNAGENLDLIVEYEAYPKPEHQQWIYMNRTL 45 (101)
T ss_pred ceEEEECCCCEEEEEEEEeCCCCeeeEEEcCCccc
Confidence 456889999999999999999998 9999998765
No 147
>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain. IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=97.40 E-value=0.0021 Score=34.88 Aligned_cols=34 Identities=15% Similarity=0.424 Sum_probs=26.7
Q ss_pred EeCCCCCEEEcCCCcEEEEeEeccc-CCCEEEEEEC
Q psy6536 8 KTNPPPKVTLDIGATFVITCETVGV-PTPLVSWRLN 42 (67)
Q Consensus 8 ~~~~~~~~~~~~g~~~~l~C~a~G~-P~P~i~W~~~ 42 (67)
.+.| ..+.+.+|++|.|.|...+. ....+.|.+.
T Consensus 3 ~q~~-~~v~~~~G~~v~L~C~~~~~~~~~~v~Wyrq 37 (116)
T cd07706 3 TQAQ-PDVSVQVGEEVTLNCRYETSWTNYYIFWYKQ 37 (116)
T ss_pred EEeC-CceEEcCCCCEEEEEEEeCCCCceEEEEEEE
Confidence 3444 45789999999999998864 5678999974
No 148
>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.
Probab=97.26 E-value=0.0029 Score=33.20 Aligned_cols=29 Identities=21% Similarity=0.194 Sum_probs=24.0
Q ss_pred EEEcCCCcEEEEeEecc-cCCCEEEEEECC
Q psy6536 15 VTLDIGATFVITCETVG-VPTPLVSWRLNW 43 (67)
Q Consensus 15 ~~~~~g~~~~l~C~a~G-~P~P~i~W~~~g 43 (67)
+.+.+|+++.|.|.... .....+.|.+..
T Consensus 2 v~~~~G~~vtl~C~~~~~~~~~~~~W~r~~ 31 (98)
T cd05716 2 VTGELGGSVTIPCPYPPKNRSYEKYWCKWG 31 (98)
T ss_pred EEEEeCCeEEEEeeCCCCCCCcEeEeECCC
Confidence 46789999999998876 467889999875
No 149
>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP). Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=97.18 E-value=0.0028 Score=33.76 Aligned_cols=25 Identities=20% Similarity=0.286 Sum_probs=20.2
Q ss_pred CCCcEEEEeEecccC------CCEEEEEECC
Q psy6536 19 IGATFVITCETVGVP------TPLVSWRLNW 43 (67)
Q Consensus 19 ~g~~~~l~C~a~G~P------~P~i~W~~~g 43 (67)
.|++|.|.|.....| ...|.|.|..
T Consensus 1 ~G~~vtL~C~~~~~~~~~~~~~~~v~W~k~~ 31 (106)
T cd05877 1 RGGNVTLPCRYHYEPELSAPRKIRVKWTKLE 31 (106)
T ss_pred CCCcEEEEeEeECCCcCCCCccceEEEEEec
Confidence 489999999987764 4679999864
No 150
>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain. IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.
Probab=97.14 E-value=0.0012 Score=35.46 Aligned_cols=31 Identities=16% Similarity=0.214 Sum_probs=23.5
Q ss_pred EcCCCcEEEEeEecc-cCC-CEEEEEECCccCC
Q psy6536 17 LDIGATFVITCETVG-VPT-PLVSWRLNWNHIP 47 (67)
Q Consensus 17 ~~~g~~~~l~C~a~G-~P~-P~i~W~~~g~~~~ 47 (67)
...++.+.|.|.|.| .|. =.++|+++|..+.
T Consensus 13 ~~~~~~~tL~C~a~gFyP~~I~v~W~kng~~~~ 45 (96)
T cd07697 13 IEKQGQGIYLCLLENFFPDVIQVHWREGNSPSI 45 (96)
T ss_pred HccCCCEEEEEEEEEEeCCCeEEEEEECCEECc
Confidence 334677999999999 452 3568999998764
No 151
>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE). IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.
Probab=97.08 E-value=0.0023 Score=34.10 Aligned_cols=29 Identities=21% Similarity=0.366 Sum_probs=23.2
Q ss_pred CCCcEEEEeEecc-cCC-CEEEEEECCccCC
Q psy6536 19 IGATFVITCETVG-VPT-PLVSWRLNWNHIP 47 (67)
Q Consensus 19 ~g~~~~l~C~a~G-~P~-P~i~W~~~g~~~~ 47 (67)
..+.+.|.|.|.| .|. =.|+|+++|..+.
T Consensus 13 ~~~~~~L~C~a~gFyP~~I~vtW~~dg~~~~ 43 (94)
T cd05847 13 TSETIQLLCLISGYTPGTIEVEWLVDGQVAT 43 (94)
T ss_pred CCCCEEEEEEEEeEECCCCEEEEEECCEECc
Confidence 4566999999999 564 5779999998863
No 152
>cd00096 Ig Immunoglobulin domain. Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=97.02 E-value=0.0021 Score=29.83 Aligned_cols=24 Identities=29% Similarity=0.685 Sum_probs=20.9
Q ss_pred EEEEeEecccCCCEEEEEECCccC
Q psy6536 23 FVITCETVGVPTPLVSWRLNWNHI 46 (67)
Q Consensus 23 ~~l~C~a~G~P~P~i~W~~~g~~~ 46 (67)
+.|.|.+.+.|.+.+.|.+++...
T Consensus 1 ~~l~C~~~~~~~~~~~W~~~~~~~ 24 (74)
T cd00096 1 VTLTCLASGPPPPTITWLKNGKPL 24 (74)
T ss_pred CEEEEEecCCCCCcEEEEECCEEC
Confidence 468999999999999999987655
No 153
>PHA02987 Ig domain OX-2-like protein; Provisional
Probab=96.97 E-value=0.0038 Score=37.36 Aligned_cols=32 Identities=22% Similarity=0.486 Sum_probs=26.7
Q ss_pred CEEEcCCCcEEEEeEec-ccCCCEEEEEECCcc
Q psy6536 14 KVTLDIGATFVITCETV-GVPTPLVSWRLNWNH 45 (67)
Q Consensus 14 ~~~~~~g~~~~l~C~a~-G~P~P~i~W~~~g~~ 45 (67)
.+.|.+|+++.|.|.-. +...+.|+|.|..+.
T Consensus 24 ~v~V~ege~VtLsCs~t~s~~~~qVtWkK~~~~ 56 (189)
T PHA02987 24 KITVSEHVNVKISCNKTSSFNSILITWKKNNKT 56 (189)
T ss_pred EEEEcCCCCEEEEEecCCCCccceEEEEEcCCC
Confidence 35789999999999984 777899999997543
No 154
>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA). Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.
Probab=96.96 E-value=0.0096 Score=32.53 Aligned_cols=29 Identities=17% Similarity=0.417 Sum_probs=22.5
Q ss_pred CCEEEcCCCcEEEEeEecccC----CCEEEEEE
Q psy6536 13 PKVTLDIGATFVITCETVGVP----TPLVSWRL 41 (67)
Q Consensus 13 ~~~~~~~g~~~~l~C~a~G~P----~P~i~W~~ 41 (67)
..+.+.+|+++.|.|.-...+ ...|.|.+
T Consensus 6 ~~v~~~~G~~v~L~C~~s~~~~~~~~~~i~W~~ 38 (115)
T cd05880 6 KEVEAVNGTDVRLKCTFSSSAPIGDTLVITWNF 38 (115)
T ss_pred ceEEEEcCCCEEEEEEEEeCCCCCCcEEEEEEE
Confidence 457889999999999876543 35799974
No 155
>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI. IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.
Probab=96.91 E-value=0.0093 Score=31.46 Aligned_cols=39 Identities=8% Similarity=0.123 Sum_probs=30.3
Q ss_pred CeEEeCCCCCEEEcCCCcEEEEeEecccCCCEEEEEECCccC
Q psy6536 5 AYIKTNPPPKVTLDIGATFVITCETVGVPTPLVSWRLNWNHI 46 (67)
Q Consensus 5 P~~~~~~~~~~~~~~g~~~~l~C~a~G~P~P~i~W~~~g~~~ 46 (67)
|.+...| . ..+.+|++|+|.|...- +.-.+.|.|+|...
T Consensus 2 P~l~a~p-~-~vV~~G~~VTL~C~~~~-~~~~f~l~k~g~~~ 40 (94)
T cd05711 2 PFLSAHP-S-PVVPSGENVTLQCHSDI-RFDRFILYKEGRSK 40 (94)
T ss_pred CEEEecC-C-CccCCCCeEEEEEecCC-CCCEEEEEECCCCC
Confidence 6676655 3 46889999999998876 56689999998653
No 156
>cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=96.91 E-value=0.0027 Score=34.35 Aligned_cols=39 Identities=21% Similarity=0.418 Sum_probs=27.2
Q ss_pred eEEeCCCCCEEEcCCCcEEEEeEecc-c-CC-CEEEEEECCcc
Q psy6536 6 YIKTNPPPKVTLDIGATFVITCETVG-V-PT-PLVSWRLNWNH 45 (67)
Q Consensus 6 ~~~~~~~~~~~~~~g~~~~l~C~a~G-~-P~-P~i~W~~~g~~ 45 (67)
.++..|. ......++.+.|.|.+.| . |. -.++|.++|+.
T Consensus 6 V~l~pPs-~e~l~~~~~atLtClV~~f~~P~~i~V~W~~~g~~ 47 (99)
T cd04986 6 LSLQRPA-LEDLLLGSSASLTCTLSGLRDPEGAVFTWTPSGGK 47 (99)
T ss_pred EEEECcC-hHHhCcCCccEEEEEEeccCCCCCeEEEEEECCcc
Confidence 3344443 224456888999999999 4 53 47889999875
No 157
>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c
Probab=96.90 E-value=0.0048 Score=32.19 Aligned_cols=24 Identities=13% Similarity=0.177 Sum_probs=18.9
Q ss_pred CcEEEEeEecccC---CCEEEEEECCc
Q psy6536 21 ATFVITCETVGVP---TPLVSWRLNWN 44 (67)
Q Consensus 21 ~~~~l~C~a~G~P---~P~i~W~~~g~ 44 (67)
++|.|.|...+.+ ...|.|.|...
T Consensus 1 ~~v~L~C~~~~~~~~~~~~v~W~k~~~ 27 (98)
T cd05718 1 ESVTLECSFPVPGPVQITQVTWMKITG 27 (98)
T ss_pred CCEEEEeEeeCCCCceEEEEEEeeECC
Confidence 5789999998865 45799998653
No 158
>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG). Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi
Probab=96.89 E-value=0.007 Score=32.86 Aligned_cols=24 Identities=17% Similarity=0.523 Sum_probs=19.8
Q ss_pred CCCcEEEEeEecccC----------CCEEEEEEC
Q psy6536 19 IGATFVITCETVGVP----------TPLVSWRLN 42 (67)
Q Consensus 19 ~g~~~~l~C~a~G~P----------~P~i~W~~~ 42 (67)
.|+++.|.|.....+ ...|.|.|.
T Consensus 1 ~G~~V~LpC~~~~~~~~~~~~~~~~~~~i~W~k~ 34 (110)
T cd05878 1 LSSSVLLPCYFTLPPALPPPSNAPESPRIKWTKL 34 (110)
T ss_pred CCCCEEEeeEeeCCccccccccCCCCCEEEEEEe
Confidence 489999999998765 367999986
No 159
>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain. Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.
Probab=96.85 E-value=0.01 Score=31.75 Aligned_cols=28 Identities=18% Similarity=0.433 Sum_probs=22.8
Q ss_pred EEcCCCcEEEEeEecccCCCEEEEEECC
Q psy6536 16 TLDIGATFVITCETVGVPTPLVSWRLNW 43 (67)
Q Consensus 16 ~~~~g~~~~l~C~a~G~P~P~i~W~~~g 43 (67)
.+.+|++|.|.|...+.-...+.|.+..
T Consensus 2 ~v~~G~~vtL~C~~~~~~~~~v~Wyrq~ 29 (104)
T cd05720 2 DAELGQKVELKCEVLNSSPTGCSWLFQP 29 (104)
T ss_pred cccCCCeEEEEEEecCCCCCcEEEEEeC
Confidence 3678999999999977656779998764
No 160
>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D
Probab=96.81 E-value=0.016 Score=31.47 Aligned_cols=26 Identities=12% Similarity=0.317 Sum_probs=20.8
Q ss_pred EEcCCCcEEEEeEecccCCC--EEEEEECC
Q psy6536 16 TLDIGATFVITCETVGVPTP--LVSWRLNW 43 (67)
Q Consensus 16 ~~~~g~~~~l~C~a~G~P~P--~i~W~~~g 43 (67)
.+.+|+++.|.|.- .|.+ .++|.|..
T Consensus 9 ~~~~G~~V~L~v~~--~p~~~~~~~W~kg~ 36 (105)
T cd05774 9 QVAEGENVLLLVHN--LPENLLAYAWYKGK 36 (105)
T ss_pred cccCCCCEEEEecC--CCCCceEEEEEcCC
Confidence 57799999999854 5666 99999963
No 161
>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0). Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.
Probab=96.78 E-value=0.0079 Score=33.18 Aligned_cols=28 Identities=14% Similarity=0.368 Sum_probs=22.5
Q ss_pred CEEEcCCCcEEEEeEeccc----CCCEEEEEE
Q psy6536 14 KVTLDIGATFVITCETVGV----PTPLVSWRL 41 (67)
Q Consensus 14 ~~~~~~g~~~~l~C~a~G~----P~P~i~W~~ 41 (67)
.+.+..|+++.|.|.-... +...|+|.+
T Consensus 7 ev~a~~G~~v~L~C~f~~~~~~~~~~~v~W~~ 38 (116)
T cd05879 7 EVYGTVGSDVTLSCSFWSSEWISDDISFTWHY 38 (116)
T ss_pred eEEEEcCCcEEEEEEEecCCCCCCcEEEEEEE
Confidence 4688899999999988763 457999943
No 162
>cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins. Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect
Probab=96.74 E-value=0.0049 Score=33.21 Aligned_cols=32 Identities=28% Similarity=0.570 Sum_probs=24.7
Q ss_pred CCCEEEcCCCcEEE-Ee-EecccCCCEEEEEECC
Q psy6536 12 PPKVTLDIGATFVI-TC-ETVGVPTPLVSWRLNW 43 (67)
Q Consensus 12 ~~~~~~~~g~~~~l-~C-~a~G~P~P~i~W~~~g 43 (67)
.....+.+|..+.+ .| .+.|.|.+.|+|..+.
T Consensus 8 ~~~~~~~~g~~~~vA~C~sa~gkPaa~IsW~~~~ 41 (97)
T cd07704 8 GPSLLIDGGNGTTLAACCAAEGRPAADVTWETNV 41 (97)
T ss_pred CCeeEeecCcceeEEEEEccCCccCCEeEEeCCC
Confidence 34456778888877 66 5568999999999873
No 163
>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).
Probab=96.71 E-value=0.013 Score=30.73 Aligned_cols=24 Identities=17% Similarity=0.220 Sum_probs=16.3
Q ss_pred CCcEEEEeEecccCC---CEEEEEECC
Q psy6536 20 GATFVITCETVGVPT---PLVSWRLNW 43 (67)
Q Consensus 20 g~~~~l~C~a~G~P~---P~i~W~~~g 43 (67)
|++|.|.|...+... ..|.|.+..
T Consensus 1 G~~v~L~C~~~~~~~~~~~~v~W~k~~ 27 (100)
T cd05713 1 GEDAELPCHLSPKMSAEHMEVRWFRSQ 27 (100)
T ss_pred CCcEEEEeEEcCCCCCCeeEEEEEECC
Confidence 788999998763221 357787654
No 164
>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins. Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.
Probab=96.69 E-value=0.016 Score=31.00 Aligned_cols=21 Identities=29% Similarity=0.607 Sum_probs=18.5
Q ss_pred cEEEEeEec-ccCCCEEEEEEC
Q psy6536 22 TFVITCETV-GVPTPLVSWRLN 42 (67)
Q Consensus 22 ~~~l~C~a~-G~P~P~i~W~~~ 42 (67)
...+.|.+. |.|.+.|+|.++
T Consensus 17 ~~va~C~s~~gkPaa~IsW~~~ 38 (95)
T cd07703 17 VPVAKCVSANGRPPARISWSST 38 (95)
T ss_pred cEEEEEEcCCCCCCcEEEEEcC
Confidence 378999776 899999999987
No 165
>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4. Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=96.50 E-value=0.016 Score=30.81 Aligned_cols=30 Identities=23% Similarity=0.311 Sum_probs=24.4
Q ss_pred EEcCCCcEEEEeEecccCCC--EEEEEECCcc
Q psy6536 16 TLDIGATFVITCETVGVPTP--LVSWRLNWNH 45 (67)
Q Consensus 16 ~~~~g~~~~l~C~a~G~P~P--~i~W~~~g~~ 45 (67)
.+..|++++|.|++...+.| .|.|.-.+..
T Consensus 10 ~lL~G~sLtLtl~~~s~s~p~~~i~w~~P~n~ 41 (88)
T cd07694 10 HVLSGTNLTLTLHGSSNSLPAFKVEWRGPGNK 41 (88)
T ss_pred eeecCCcEEEEEecCCCCCCCccEEEeCCCCc
Confidence 67899999999999654555 9999977664
No 166
>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region
Probab=96.45 E-value=0.0084 Score=31.74 Aligned_cols=26 Identities=12% Similarity=0.321 Sum_probs=21.3
Q ss_pred cCCCcEEEEeEecc-cCCCEEEEEECC
Q psy6536 18 DIGATFVITCETVG-VPTPLVSWRLNW 43 (67)
Q Consensus 18 ~~g~~~~l~C~a~G-~P~P~i~W~~~g 43 (67)
..|++|.|.|...- ...-.|.|.+..
T Consensus 2 ~~G~sVtL~c~~~~~~~~~~v~W~~~~ 28 (97)
T cd05775 2 ILGGSVTLPLNIPDGTEIESITWSFNT 28 (97)
T ss_pred ccCCeEEEeCCCCCCcEEEEEEEecCC
Confidence 37999999998765 667899999864
No 167
>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain. IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.
Probab=96.41 E-value=0.0083 Score=32.19 Aligned_cols=28 Identities=18% Similarity=0.411 Sum_probs=23.0
Q ss_pred EEcCCCcEEEEeEecccC-CCEEEEEECC
Q psy6536 16 TLDIGATFVITCETVGVP-TPLVSWRLNW 43 (67)
Q Consensus 16 ~~~~g~~~~l~C~a~G~P-~P~i~W~~~g 43 (67)
.+.+|+++.|.|.+.+.. ...+.|.+..
T Consensus 2 ~v~~G~~vtL~C~~~~~~~~~~~~Wyrq~ 30 (107)
T cd07700 2 LVQTNNTVKLSCEAKGISENTRIYWLRWR 30 (107)
T ss_pred EEcCCCCEEEEEEEecCCCCCeEEEEEEC
Confidence 578999999999998754 5689999763
No 168
>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.
Probab=96.37 E-value=0.032 Score=30.47 Aligned_cols=31 Identities=16% Similarity=0.199 Sum_probs=22.9
Q ss_pred CCEEEcCCCcEEEEeEecccC------CCEEEEEECC
Q psy6536 13 PKVTLDIGATFVITCETVGVP------TPLVSWRLNW 43 (67)
Q Consensus 13 ~~~~~~~g~~~~l~C~a~G~P------~P~i~W~~~g 43 (67)
..+.+.+|++|.|.|.-.-.. .-.+.|.+..
T Consensus 7 ~~v~~~~G~~VtL~C~f~~~~~~~~~~~~~~~Wykq~ 43 (119)
T cd05712 7 KSVSVQEGLCVLIPCSFSYPADWPVSNGVHGIWYKGH 43 (119)
T ss_pred CEEEEeccccEEEEEEeeCcccccCCCceEEEEEeCC
Confidence 457889999999999764221 3568999763
No 169
>KOG3515|consensus
Probab=96.30 E-value=0.005 Score=43.29 Aligned_cols=41 Identities=15% Similarity=0.222 Sum_probs=31.3
Q ss_pred eEEeCCCCCEEEcCCCcEEEEeEecccC-CCEEEEEECCccCC
Q psy6536 6 YIKTNPPPKVTLDIGATFVITCETVGVP-TPLVSWRLNWNHIP 47 (67)
Q Consensus 6 ~~~~~~~~~~~~~~g~~~~l~C~a~G~P-~P~i~W~~~g~~~~ 47 (67)
.....+.+. .+.+|++|.|.|.+.|+| .+++.|.+.+...-
T Consensus 9 v~~~~~l~~-~~~~g~~v~l~C~v~~~pp~~~~eW~h~~~~~~ 50 (741)
T KOG3515|consen 9 VCESSSLTV-GLRLGEDVPLPCRVNSNPPEIDVEWYHSTSGEH 50 (741)
T ss_pred cccCCCCCh-hhccCCcceeeeecCCCCCCcceEEEecCcccc
Confidence 333333344 788999999999999876 68999999987553
No 170
>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....
Probab=96.28 E-value=0.0074 Score=31.63 Aligned_cols=32 Identities=22% Similarity=0.408 Sum_probs=27.2
Q ss_pred CCCEEEcCCCcEEEEeEec-ccCCCEEEEEECC
Q psy6536 12 PPKVTLDIGATFVITCETV-GVPTPLVSWRLNW 43 (67)
Q Consensus 12 ~~~~~~~~g~~~~l~C~a~-G~P~P~i~W~~~g 43 (67)
+..+.+.+|+++.|.|... ......+.|.+..
T Consensus 8 ~~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~ 40 (114)
T PF07686_consen 8 PSPVTVQEGESVTLPCSYSSSSNQSSVYWYRQS 40 (114)
T ss_dssp ESEEEEETTSEEEEEEEEESSSSGSEEEEEEEE
T ss_pred CCeEEEecCCCEEEEEEEeCCCCcceEEEEEEC
Confidence 3567889999999999999 6678899999853
No 171
>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins. Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.
Probab=96.24 E-value=0.031 Score=29.39 Aligned_cols=24 Identities=17% Similarity=0.361 Sum_probs=17.6
Q ss_pred CCcEEEEeEecccCCC-EEEEEECC
Q psy6536 20 GATFVITCETVGVPTP-LVSWRLNW 43 (67)
Q Consensus 20 g~~~~l~C~a~G~P~P-~i~W~~~g 43 (67)
|+++.|.|.-...... .|.|.|..
T Consensus 1 G~~vtL~C~~~~~~~~~~v~W~k~~ 25 (97)
T cd05846 1 GGNVTLSCNLTLPEEVLQVTWQKIQ 25 (97)
T ss_pred CCcEEEEEEeCCCCeeEEEEEEEcC
Confidence 7899999986544332 69999864
No 172
>smart00406 IGv Immunoglobulin V-Type.
Probab=96.23 E-value=0.042 Score=27.10 Aligned_cols=22 Identities=23% Similarity=0.523 Sum_probs=17.4
Q ss_pred cEEEEeEecccCCC--EEEEEECC
Q psy6536 22 TFVITCETVGVPTP--LVSWRLNW 43 (67)
Q Consensus 22 ~~~l~C~a~G~P~P--~i~W~~~g 43 (67)
++.|.|...+...+ .+.|.+..
T Consensus 1 ~v~l~C~~~~~~~~~~~v~W~~~~ 24 (81)
T smart00406 1 SVTLSCKASGFTFSSYYVSWVRQP 24 (81)
T ss_pred CEEEEEEEeccccceeEEEEEEeC
Confidence 47899999887765 89998764
No 173
>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=96.12 E-value=0.029 Score=29.84 Aligned_cols=27 Identities=19% Similarity=0.475 Sum_probs=21.7
Q ss_pred CCCcEEEEeEecc-cCC-CEEEEEECCcc
Q psy6536 19 IGATFVITCETVG-VPT-PLVSWRLNWNH 45 (67)
Q Consensus 19 ~g~~~~l~C~a~G-~P~-P~i~W~~~g~~ 45 (67)
.++.+.|.|.|.| .|. =.|+|+++|..
T Consensus 15 ~~~~~~L~C~a~gFyP~~i~vtW~k~g~~ 43 (95)
T cd04985 15 SSDSVTLGCLATGFLPEPVTFTWNSGSNS 43 (95)
T ss_pred CCCcEEEEEEEeeEECCCcEEEEeECCEE
Confidence 4667999999999 453 46689999986
No 174
>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of
Probab=96.00 E-value=0.053 Score=29.64 Aligned_cols=32 Identities=13% Similarity=0.126 Sum_probs=24.0
Q ss_pred EEEcCCCcEEEEeEec-----------ccCCCEEEEEECCccC
Q psy6536 15 VTLDIGATFVITCETV-----------GVPTPLVSWRLNWNHI 46 (67)
Q Consensus 15 ~~~~~g~~~~l~C~a~-----------G~P~P~i~W~~~g~~~ 46 (67)
..+.+|+.+.|.|... ....-.|.|.|++..+
T Consensus 10 ~~~~~GE~v~l~C~~~~~~~~~~~~~~~~~~~~v~WyK~~~~~ 52 (104)
T cd05896 10 YMVLAGEPVRIKCALFYGYIRTNYSMAQSAGLSLMWYKSSGDG 52 (104)
T ss_pred EEEcCCCeEEEECCCccccccccccccccCCceEEEEECCCCC
Confidence 5778999999999861 2223489999997544
No 175
>PHA03052 Hypothetical protein; Provisional
Probab=95.94 E-value=0.024 Score=28.77 Aligned_cols=34 Identities=21% Similarity=0.312 Sum_probs=28.5
Q ss_pred CCEEEcCCCcEEEEeEec---ccCCCEEEEEECCccC
Q psy6536 13 PKVTLDIGATFVITCETV---GVPTPLVSWRLNWNHI 46 (67)
Q Consensus 13 ~~~~~~~g~~~~l~C~a~---G~P~P~i~W~~~g~~~ 46 (67)
+.+.+..|..++|.|+|. |...+.+.|.-|+..+
T Consensus 5 ~~i~~slGs~ltI~Ckv~lg~g~~~a~V~W~~N~~~~ 41 (69)
T PHA03052 5 EGIVTSLGSNLTITCKVSLRPPTTDADVFWISNGMYY 41 (69)
T ss_pred ccEEEEccCCceEeEEEEecCCCcceEEEEEeCCcEE
Confidence 456889999999999997 4447899999999877
No 176
>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins. Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.
Probab=95.84 E-value=0.018 Score=30.62 Aligned_cols=24 Identities=21% Similarity=0.540 Sum_probs=20.7
Q ss_pred CCCcEEEEeEecccC------CCEEEEEEC
Q psy6536 19 IGATFVITCETVGVP------TPLVSWRLN 42 (67)
Q Consensus 19 ~g~~~~l~C~a~G~P------~P~i~W~~~ 42 (67)
.|++|.|.|...+.| .+.|.|.+.
T Consensus 1 ~G~~V~L~C~~~~~~~~~~~~~~~i~W~k~ 30 (106)
T cd05714 1 LGGNVTLPCRFHLEPALSAPHGPRIKWTKL 30 (106)
T ss_pred CCCCEEEeEEeECCcccCCCCCcEEEEEEe
Confidence 489999999988765 689999987
No 177
>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus
Probab=95.76 E-value=0.018 Score=30.66 Aligned_cols=22 Identities=32% Similarity=0.649 Sum_probs=19.0
Q ss_pred CcEEEEeEe-cccCCCEEEEEEC
Q psy6536 21 ATFVITCET-VGVPTPLVSWRLN 42 (67)
Q Consensus 21 ~~~~l~C~a-~G~P~P~i~W~~~ 42 (67)
....+.|.+ .|.|.+.|+|.++
T Consensus 16 ~~~va~C~s~~gkP~a~ItW~~~ 38 (95)
T cd05719 16 PVTVATCVSANGKPPATISWETT 38 (95)
T ss_pred ccEEEEEECCCCcCCCEEEEEeC
Confidence 346889999 5999999999997
No 178
>PF06328 Lep_receptor_Ig: Ig-like C2-type domain; InterPro: IPR010457 This entry represents a ligand-binding domain that displays similarity to C2-set immunoglobulin domains (antibody constant domain 2) []. The two cysteine residues form a disulphide bridge.; PDB: 3L5H_A 1P9M_A 1I1R_A 2D9Q_B.
Probab=95.60 E-value=0.11 Score=27.43 Aligned_cols=34 Identities=24% Similarity=0.565 Sum_probs=26.4
Q ss_pred EEEcCCCcEEEEeEec-----ccCCCEEEEEECCccCCC
Q psy6536 15 VTLDIGATFVITCETV-----GVPTPLVSWRLNWNHIPA 48 (67)
Q Consensus 15 ~~~~~g~~~~l~C~a~-----G~P~P~i~W~~~g~~~~~ 48 (67)
..+..|+.++..|.-. ......|.|..++..+++
T Consensus 13 pvv~lGS~vtasC~l~~~c~~~~~a~~I~Wkln~~~iP~ 51 (89)
T PF06328_consen 13 PVVSLGSNVTASCVLKQNCSHSVNASQIVWKLNGEKIPG 51 (89)
T ss_dssp SEEETTS-EEEEEEE-CCCHCT-STTCEEEECSSCESTC
T ss_pred CEEeCCCCEEEEEEEECCCCCCcccceEEEEECCEECCh
Confidence 3788999999999665 357889999999998875
No 179
>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins. Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2
Probab=95.56 E-value=0.035 Score=30.07 Aligned_cols=29 Identities=17% Similarity=0.311 Sum_probs=22.4
Q ss_pred CCEEEcCCCcEEEEeEecccC----CCEEEEEE
Q psy6536 13 PKVTLDIGATFVITCETVGVP----TPLVSWRL 41 (67)
Q Consensus 13 ~~~~~~~g~~~~l~C~a~G~P----~P~i~W~~ 41 (67)
..+.+.+|+++.|.|...... ...|.|.+
T Consensus 6 ~~v~v~~G~~vtL~C~~s~~~~~~~~~~v~W~~ 38 (116)
T cd05715 6 REVYAVNGSDVRLKCTFSSSEPISDDISVTWSF 38 (116)
T ss_pred CeEEEEcCCCeEEEeEEeCCCCcCCceEEEEEE
Confidence 346888999999999886542 36799975
No 180
>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen
Probab=95.29 E-value=0.13 Score=28.14 Aligned_cols=24 Identities=17% Similarity=0.498 Sum_probs=18.3
Q ss_pred CCCcEEEEeEecccC-------CCEEEEEEC
Q psy6536 19 IGATFVITCETVGVP-------TPLVSWRLN 42 (67)
Q Consensus 19 ~g~~~~l~C~a~G~P-------~P~i~W~~~ 42 (67)
.|+++.|.|.-.-.| .|.|.|.+.
T Consensus 1 ~~~~v~LpC~~~~~p~~~~~~~~~~I~W~k~ 31 (110)
T cd05902 1 LSSSVLLPCVFTLPPSASSPPEGPRIKWTKL 31 (110)
T ss_pred CCCcEEEeeEEEcCccccCCCCCCEEEEEEe
Confidence 478999999955333 489999975
No 181
>PHA03376 BARF1; Provisional
Probab=95.29 E-value=0.038 Score=33.57 Aligned_cols=26 Identities=23% Similarity=0.487 Sum_probs=21.8
Q ss_pred CCcEEEEeEecccCCCEEEEEECCcc
Q psy6536 20 GATFVITCETVGVPTPLVSWRLNWNH 45 (67)
Q Consensus 20 g~~~~l~C~a~G~P~P~i~W~~~g~~ 45 (67)
-+...+.|..-|.|.|.++|..+.+.
T Consensus 139 ~~~~~i~C~sggfP~P~~~Wle~~~~ 164 (221)
T PHA03376 139 FSVLTVTCTVNAFPHPHVQWLMPEGV 164 (221)
T ss_pred CCeeEEEEecCCcCCchheeccccCC
Confidence 34568999999999999999988653
No 182
>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain. IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.
Probab=95.21 E-value=0.076 Score=29.03 Aligned_cols=29 Identities=17% Similarity=0.405 Sum_probs=23.5
Q ss_pred CEEEcCCCcEEEEeEecccC--CCEEEEEEC
Q psy6536 14 KVTLDIGATFVITCETVGVP--TPLVSWRLN 42 (67)
Q Consensus 14 ~~~~~~g~~~~l~C~a~G~P--~P~i~W~~~ 42 (67)
...+.+|+++.|.|...+.- ...+.|.+.
T Consensus 6 ~~~v~~G~~vtL~C~~~~~~~~~~~~~WYkQ 36 (117)
T cd04981 6 PGLVKPGQSLKLSCKASGFTFTSYGVNWVRQ 36 (117)
T ss_pred CeEEcCCCCEEEEEEEeCCCcccceEEEEEE
Confidence 36889999999999987654 567999865
No 183
>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA
Probab=94.26 E-value=0.49 Score=26.31 Aligned_cols=24 Identities=21% Similarity=0.541 Sum_probs=19.0
Q ss_pred CCCcEEEEeEecccCC-----------CEEEEEEC
Q psy6536 19 IGATFVITCETVGVPT-----------PLVSWRLN 42 (67)
Q Consensus 19 ~g~~~~l~C~a~G~P~-----------P~i~W~~~ 42 (67)
.|+++.|+|.-.-.|+ +.|.|.+-
T Consensus 1 ~~g~v~LPC~f~~~p~~p~~~~~~~~~~rIkW~~~ 35 (117)
T cd05901 1 LSGSVVLPCRFSTLPTLPPSVITTSEFLRIKWTKI 35 (117)
T ss_pred CCCCEEEeeEEEecCCCCCcccCCCCCcEEEEEEe
Confidence 3789999999986663 49999875
No 184
>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain. Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=94.23 E-value=0.057 Score=27.16 Aligned_cols=27 Identities=26% Similarity=0.431 Sum_probs=21.2
Q ss_pred cCCCcEEEEeEecccCCCEEEEEECCccCC
Q psy6536 18 DIGATFVITCETVGVPTPLVSWRLNWNHIP 47 (67)
Q Consensus 18 ~~g~~~~l~C~a~G~P~P~i~W~~~g~~~~ 47 (67)
..|.+|.|.|.-.+.. |.|.+++..+.
T Consensus 5 isGTtVtlTCP~~~~~---i~W~~n~~~~~ 31 (65)
T cd07692 5 ISGTTVTVTCPLSGDD---IKWKKNDQVSQ 31 (65)
T ss_pred EeccEEEEECCCCCCC---ceEEeCCccCC
Confidence 4688999999766433 99999987664
No 185
>PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs). A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold.
Probab=94.04 E-value=0.42 Score=24.77 Aligned_cols=43 Identities=23% Similarity=0.346 Sum_probs=30.5
Q ss_pred cCCeEEeCCCCC-EEEcCC--CcEEEEeEecccCCCEEEEEECCccC
Q psy6536 3 SPAYIKTNPPPK-VTLDIG--ATFVITCETVGVPTPLVSWRLNWNHI 46 (67)
Q Consensus 3 ~~P~~~~~~~~~-~~~~~g--~~~~l~C~a~G~P~P~i~W~~~g~~~ 46 (67)
.++.|+.++... +....+ +...|.++|.|. .+.+.|+.||..+
T Consensus 9 ~~l~I~~P~~g~~~~~~~~~~~~~~l~l~a~~~-~~~~~W~vdg~~~ 54 (89)
T PF06832_consen 9 SPLRITSPPDGAVLALDPGIPERQPLVLKAAGG-RGPVYWFVDGEPL 54 (89)
T ss_pred CCCEEEecCCCCEEEeCCCCCccceEEEEEeCC-CCcEEEEECCEEc
Confidence 567887655432 233333 367888888887 7799999999988
No 186
>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=93.21 E-value=0.25 Score=25.12 Aligned_cols=41 Identities=17% Similarity=0.364 Sum_probs=25.0
Q ss_pred CCCcEEEEeEecccCCCEEEEEECCccCCCc--ee--e--eeecCCeEEEEc
Q psy6536 19 IGATFVITCETVGVPTPLVSWRLNWNHIPAK--CT--T--TSEDGVGTLTCP 64 (67)
Q Consensus 19 ~g~~~~l~C~a~G~P~P~i~W~~~g~~~~~~--~~--~--~~~~~~g~L~I~ 64 (67)
..++|.|.|.+. -+|+|.+ |..+.+. .. . ...+.+|.+.+.
T Consensus 5 ~~~~V~L~C~~~----tsi~W~k-G~~~~~~~~~tlnLGs~~~DPRG~Y~C~ 51 (69)
T cd07691 5 SEGKVFLKCNGA----TNITWKK-GKEILEVSNTLLDLGSRINDPRGTYSCK 51 (69)
T ss_pred cCceEEEEecCC----CcEEEec-CcccccccccEEeccCcccCCCcceEec
Confidence 345799999762 4599999 6654321 11 1 124667877764
No 187
>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased
Probab=92.97 E-value=0.31 Score=27.13 Aligned_cols=28 Identities=14% Similarity=-0.001 Sum_probs=22.2
Q ss_pred EEEcCCCcEEEEeEecccCCC---EEEEEEC
Q psy6536 15 VTLDIGATFVITCETVGVPTP---LVSWRLN 42 (67)
Q Consensus 15 ~~~~~g~~~~l~C~a~G~P~P---~i~W~~~ 42 (67)
..+..|+++.|.|+++|.=.. .++|.|.
T Consensus 8 ~lv~p~~sv~LsC~~sg~~~s~e~~~~wvRq 38 (115)
T cd05721 8 VLASSNGAASLVCEYTYNGFSKEFRASLLKG 38 (115)
T ss_pred eEEcCCCCEEEEEEecCCccccEEEEEEEEe
Confidence 577899999999999885544 5778765
No 188
>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins. Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.
Probab=92.31 E-value=0.9 Score=24.19 Aligned_cols=23 Identities=17% Similarity=0.224 Sum_probs=16.1
Q ss_pred CcEEEEeEeccc-CCCEEEEEECC
Q psy6536 21 ATFVITCETVGV-PTPLVSWRLNW 43 (67)
Q Consensus 21 ~~~~l~C~a~G~-P~P~i~W~~~g 43 (67)
+++.|.|.-... ....++|.|..
T Consensus 1 ~~vtL~C~~~~~~~~~qV~W~k~~ 24 (96)
T cd05889 1 EKMKLECVYPKTGVLIQVSWTKHN 24 (96)
T ss_pred CCEEEEeEcCCCCcEEEEEEEEcC
Confidence 468899977532 36788898864
No 189
>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins. Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also
Probab=91.48 E-value=1.2 Score=23.67 Aligned_cols=22 Identities=14% Similarity=0.249 Sum_probs=16.0
Q ss_pred CcEEEEeEeccc-CCCEEEEEEC
Q psy6536 21 ATFVITCETVGV-PTPLVSWRLN 42 (67)
Q Consensus 21 ~~~~l~C~a~G~-P~P~i~W~~~ 42 (67)
+++.|.|.-... ..-.|+|.|.
T Consensus 1 ~~vtL~C~~~~~~~~~qV~W~k~ 23 (96)
T cd05887 1 KNVTLKCRIQVNETITQSSWEKI 23 (96)
T ss_pred CCEEEEEEecCCCcEEEEEEEEc
Confidence 368899987743 3458999875
No 190
>PHA02865 MHC-like TNF binding protein; Provisional
Probab=90.33 E-value=1.4 Score=28.74 Aligned_cols=21 Identities=10% Similarity=0.165 Sum_probs=17.0
Q ss_pred cEEEEeEecccCCC--EEEEEEC
Q psy6536 22 TFVITCETVGVPTP--LVSWRLN 42 (67)
Q Consensus 22 ~~~l~C~a~G~P~P--~i~W~~~ 42 (67)
.+.|.|.|.|.=.. .++|.++
T Consensus 216 ~~tL~C~A~GFYP~~I~v~W~kd 238 (338)
T PHA02865 216 NTTLFCTFDSHYPSSVAAKWYNS 238 (338)
T ss_pred CceEEEEEEeEeCCccEEEEEec
Confidence 57999999996444 5579999
No 191
>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.
Probab=90.29 E-value=0.78 Score=24.88 Aligned_cols=37 Identities=16% Similarity=0.164 Sum_probs=25.4
Q ss_pred CCeEEeCCCCCEEEcCCCcEEEEeEecc-cCC--CEEEEEECCc
Q psy6536 4 PAYIKTNPPPKVTLDIGATFVITCETVG-VPT--PLVSWRLNWN 44 (67)
Q Consensus 4 ~P~~~~~~~~~~~~~~g~~~~l~C~a~G-~P~--P~i~W~~~g~ 44 (67)
+|.|...+ .+.+|..+++.|.+.| .|. ..|.|.+...
T Consensus 3 ~p~i~~~~----~l~~G~~vtv~C~v~~v~P~~~l~v~LlkG~~ 42 (99)
T cd07689 3 DPEILLSG----PLEEGKPVTVKCEVPDVYPFDRLEIELLKGET 42 (99)
T ss_pred CccCcccC----cccCCceEEEEEEecCcccCCceEEEEecCcc
Confidence 44554433 2468999999999985 454 5689987543
No 192
>cd05890 Ig2_Nectin-1_like Second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig2_Nectin-1_like: domain similar to the second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectins also heterophilically trans-interact with other CAMs such as nectin-like molecules (necls); nectin-1 for example, has been shown to trans-interact with necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is associ
Probab=88.10 E-value=0.52 Score=25.53 Aligned_cols=20 Identities=35% Similarity=0.767 Sum_probs=16.6
Q ss_pred EEEEeE-ecccCCCEEEEEEC
Q psy6536 23 FVITCE-TVGVPTPLVSWRLN 42 (67)
Q Consensus 23 ~~l~C~-a~G~P~P~i~W~~~ 42 (67)
+.=.|. |.|.|...|+|.-+
T Consensus 23 ~VA~CiSa~GrPpa~ItW~t~ 43 (98)
T cd05890 23 LVATCVSANGKPPSVVRWDTR 43 (98)
T ss_pred EEEEEEcCCCcCCcEeEEEcc
Confidence 456897 88999999999843
No 193
>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is
Probab=85.33 E-value=4 Score=21.71 Aligned_cols=20 Identities=30% Similarity=0.780 Sum_probs=14.3
Q ss_pred cEEEEeEecccCCC-----EEEEEEC
Q psy6536 22 TFVITCETVGVPTP-----LVSWRLN 42 (67)
Q Consensus 22 ~~~l~C~a~G~P~P-----~i~W~~~ 42 (67)
++.|.|.=.- +.| .|+|.+.
T Consensus 2 ~v~L~C~f~~-~~~~~~~~~V~W~k~ 26 (99)
T cd05886 2 DVVLHCSFIN-PLPPVKITQVTWQKL 26 (99)
T ss_pred cEEEEeEeec-CCCCCCeEEEEEEEC
Confidence 6889998763 223 6999885
No 194
>KOG3515|consensus
Probab=83.32 E-value=0.72 Score=32.95 Aligned_cols=33 Identities=18% Similarity=0.404 Sum_probs=27.7
Q ss_pred EEEcCCCcEEEEeEec-ccCCCEEEEEECCccCC
Q psy6536 15 VTLDIGATFVITCETV-GVPTPLVSWRLNWNHIP 47 (67)
Q Consensus 15 ~~~~~g~~~~l~C~a~-G~P~P~i~W~~~g~~~~ 47 (67)
....+|+.+.|.|.|. |+|.+.++|.++...+.
T Consensus 216 qsF~~g~~inlvc~~~gg~P~~~~~w~~~s~~~~ 249 (741)
T KOG3515|consen 216 QSFTEGQTINLVCNAQGGNPSQQQTWYKDSRPQS 249 (741)
T ss_pred CcccccceEEEEehhhcCCcchhhhhccccccch
Confidence 4567899999999776 68999999999987653
No 195
>KOG1026|consensus
Probab=78.50 E-value=2 Score=31.00 Aligned_cols=32 Identities=25% Similarity=0.588 Sum_probs=28.0
Q ss_pred EEEcCCCcEEEEeEecccCCCEEEEEECCccC
Q psy6536 15 VTLDIGATFVITCETVGVPTPLVSWRLNWNHI 46 (67)
Q Consensus 15 ~~~~~g~~~~l~C~a~G~P~P~i~W~~~g~~~ 46 (67)
..+..|..+.+.|.+.|.|.|.+.|..++...
T Consensus 202 ~~v~~~~~~~~~c~~~~~~vp~~~~~~~~~~~ 233 (774)
T KOG1026|consen 202 LTVEEGSSITLKCSQAGIPVPCHYWFPNCLAS 233 (774)
T ss_pred hhhcccchheeeeecccCCCcceeeecccccc
Confidence 35678999999999999999999999887655
No 196
>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals. These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region
Probab=78.04 E-value=4 Score=25.94 Aligned_cols=34 Identities=15% Similarity=0.211 Sum_probs=21.4
Q ss_pred CCCEEEEEECCcc-CCCceeeeeecCCeEEEEccCC
Q psy6536 33 PTPLVSWRLNWNH-IPAKCTTTSEDGVGTLTCPDIQ 67 (67)
Q Consensus 33 P~P~i~W~~~g~~-~~~~~~~~~~~~~g~L~I~~vq 67 (67)
..|...|...++. +.+.. .....+.|.|.+.|.+
T Consensus 11 iDP~y~W~GP~g~~l~gn~-~~nIT~TG~L~~~~F~ 45 (271)
T PF07354_consen 11 IDPTYLWTGPNGKPLSGNS-YVNITETGKLMFKNFQ 45 (271)
T ss_pred CCCceEEECCCCcccCCCC-eEEEccCceEEeeccc
Confidence 4699999977664 44321 1223446889888764
No 197
>PHA03112 IL-18 binding protein; Provisional
Probab=77.56 E-value=5.3 Score=23.07 Aligned_cols=26 Identities=19% Similarity=0.441 Sum_probs=21.4
Q ss_pred cCCCcEEEEeEeccc-CC-CEEEEEECC
Q psy6536 18 DIGATFVITCETVGV-PT-PLVSWRLNW 43 (67)
Q Consensus 18 ~~g~~~~l~C~a~G~-P~-P~i~W~~~g 43 (67)
++++++.|.|.|-+. |. -.+.|..++
T Consensus 36 k~~~~vvL~C~gcs~fp~fS~lYWl~gn 63 (141)
T PHA03112 36 KETEKVVLECRGCSYFPKFSYVYWLIGN 63 (141)
T ss_pred CCCCEEEEEEECccCCCCceEEEEEcCC
Confidence 578999999999976 64 678899665
No 198
>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ].; PDB: 2VSC_B 2JJS_D 2JJT_C.
Probab=75.74 E-value=2.1 Score=24.32 Aligned_cols=29 Identities=24% Similarity=0.436 Sum_probs=19.9
Q ss_pred cCCCcEEEEeEecc-----cCCCEEEEEECCccC
Q psy6536 18 DIGATFVITCETVG-----VPTPLVSWRLNWNHI 46 (67)
Q Consensus 18 ~~g~~~~l~C~a~G-----~P~P~i~W~~~g~~~ 46 (67)
.=.++|.|+|.+.. .+.=.|+|.++|..+
T Consensus 25 ~CN~tV~IPC~v~n~~~~ni~~m~VkWk~~~~~I 58 (130)
T PF08204_consen 25 VCNDTVVIPCFVNNLEANNISEMYVKWKFKNKDI 58 (130)
T ss_dssp TT-SEEEE--BBSS---SSGGGEEEEEEETTEEE
T ss_pred ecCCCEEEEeEeccccccccceEEEEEEECCeEE
Confidence 45788999999986 344569999998765
No 199
>KOG4597|consensus
Probab=74.04 E-value=1.9 Score=29.70 Aligned_cols=28 Identities=18% Similarity=0.048 Sum_probs=25.0
Q ss_pred EEEcCCCcEEEEeEecccCCCEEEEEEC
Q psy6536 15 VTLDIGATFVITCETVGVPTPLVSWRLN 42 (67)
Q Consensus 15 ~~~~~g~~~~l~C~a~G~P~P~i~W~~~ 42 (67)
-.+..+++.++.|-+.|.|.|.|+|.+-
T Consensus 206 w~vg~wetcS~tCg~~G~q~r~V~c~qv 233 (560)
T KOG4597|consen 206 WFVGDWETCSSTCGVQGRQYRVVTCEQV 233 (560)
T ss_pred hhcccchhhcccccccCCcCceeeeehh
Confidence 4677899999999999999999999853
No 200
>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins. Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult
Probab=68.10 E-value=8.9 Score=20.06 Aligned_cols=21 Identities=14% Similarity=0.159 Sum_probs=15.7
Q ss_pred cEEEEeEecccC---CCEEEEEEC
Q psy6536 22 TFVITCETVGVP---TPLVSWRLN 42 (67)
Q Consensus 22 ~~~l~C~a~G~P---~P~i~W~~~ 42 (67)
++.|.|.-.-.+ .-.|.|.|.
T Consensus 2 ~v~L~C~~~~~~~~~~~~v~W~k~ 25 (100)
T cd05888 2 DTRLPCRYNVSDGETVVQVLWIRE 25 (100)
T ss_pred CEEEEeEEecCCCCcEEEEEEEEc
Confidence 688999776444 458999985
No 201
>PF02440 Adeno_E3_CR1: Adenovirus E3 region protein CR1; InterPro: IPR003471 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D virus) 49 Kd protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=56.94 E-value=14 Score=18.36 Aligned_cols=20 Identities=30% Similarity=0.753 Sum_probs=15.4
Q ss_pred EcCCCcEEEEeEecccCCCEEEEE
Q psy6536 17 LDIGATFVITCETVGVPTPLVSWR 40 (67)
Q Consensus 17 ~~~g~~~~l~C~a~G~P~P~i~W~ 40 (67)
+..|++++| .|-|...++|.
T Consensus 2 v~~G~N~TL----~Gp~~~~V~Wy 21 (63)
T PF02440_consen 2 VTVGSNVTL----VGPPDGPVTWY 21 (63)
T ss_pred EeEcCcEEE----eCCCCCceEEE
Confidence 456888888 67666789998
No 202
>PHA03269 envelope glycoprotein C; Provisional
Probab=48.66 E-value=74 Score=22.41 Aligned_cols=31 Identities=23% Similarity=0.560 Sum_probs=25.8
Q ss_pred EcCCCcEEEEeEecccCCC---EEEEEECCccCC
Q psy6536 17 LDIGATFVITCETVGVPTP---LVSWRLNWNHIP 47 (67)
Q Consensus 17 ~~~g~~~~l~C~a~G~P~P---~i~W~~~g~~~~ 47 (67)
+.+|+...=.|.|...=.| .+.|+.||+++.
T Consensus 339 VL~Ge~YkAtC~vA~YYPp~SvrlrWf~ng~~V~ 372 (566)
T PHA03269 339 VLLGNPYAAYCKVNKYYPPHSVIVKWTSNFGNIG 372 (566)
T ss_pred cccCCCceEEEEeeeecCCCceEEEEEeCCcccC
Confidence 4689999999999986544 788999999886
No 203
>PF03921 ICAM_N: Intercellular adhesion molecule (ICAM), N-terminal domain; InterPro: IPR013768 Intercellular adhesion molecules (ICAMs) and vascular cell adhesion molecule-1 (VCAM-1) are part of the immunoglobulin superfamily. They are important in inflammation, immune responses and in intracellular signalling events []. The ICAM family consists of five members, designated ICAM-1 to ICAM-5. They are known to bind to leucocyte integrins CD11/CD18 during inflammation and in immune responses. In addition, ICAMs may exist in soluble forms in human plasma, due to activation and proteolysis mechanisms at cell surfaces. ICAM-1 (CD54) contains five Ig-like domains. It is expressed on leucocytes, endothelial and epithelial cells, and is upregulated in response to bacterial invasion. The protein is a ligand for lymphocyte-function associated (LFA) antigens and also a receptor for CD11a,b/CD18, fibrinogen, human rhinovirus and Plasmodium falciparum-infected erythrocytes. ICAM-1 binding sites for CD11a/CD18 and its other binding partners are located in the first domain and are overlapping. ICAM-1 domain 2 seems to play an important role in maintaining the conformation of domain 1 and particularly the structural integrity of the LFA-1 ligand-binding site []. The 3-dimensional atomic structure of the tandem N-terminal Ig-like domains (D1 and D2) of ICAM-1 has been determined to 2.2A resolution and fitted into a cryoelectron microscopy reconstruction of a rhinovirus-ICAM-1 complex []. Extensive charge interactions between ICAM-1 and human rhinovirusesare largely conserved in major and minor receptor groups of rhinoviruses. The interaction of ICAMs with LFA-1 is mediated by a divalent cation bound to the insertion (I)-domain on the alpha chain of LFA-1 and the carboxyl group of a conserved glutamic acid residue on ICAMs. ICAM-2 (CD102) has two Ig-like domains. It is expressed on endothelial cells, leucocytes and platelets, and binds to CD11a'b/CD18. The protein is refractory to proinflammatory cytokines, and plays an important role in the adhesion of leucocytes to the uninduced endothelium []. ICAM-3 (CD50) contains five Ig-like domains and binds to leucocyte integrins CD11a'd/CD18. The protein plays an important role in the immune response and perhaps in signal transduction []. ICAM-4 (LW blood group Ag) is red blood cell (RBC) specific and binds to CD11a'b/CD18. It is associated with the RBC Rh antigens and could be important in retaining immature red cells in the bone marrow, or in the uptake of senescent cells into the spleen []. ICAM-5 (telencephalin) has nine Ig-like domains and is confined to the telencephalon of the brain. The role of this CD11a/CD18 binding molecule is not yet known []. VCAM-1 was first described as a cytokine-inducible endothelial adhesion molecule. It can bind to leucocyte integrin VL-4 (very late antigen-4) to recruit leucocytes to sites of inflammation []. The predominant form of VCAM-1 in vivo has an N-terminal extracellular region comprising seven Ig-like domains []. A conserved integrin-binding motif has been identified in domains 1 and 4, variants of which are present in the N-terminal domain of all members of the integrin-binding subgroup of the immunoglobulin superfamily. The structure of a VLA-4-binding fragment comprising the first two domains of VCAM-1 has been determined to 1.8A resolution. The integrin-binding motif is exposed and forms the N-terminal region of the loop between beta-strands C and D of domain 1 []. VCAM-1 domains 1 and 2 are structurally similar to ICAM-1 and ICAM-2 []. This entry represents the N-terminal domain of ICAM proteins such as ICAM-2, ICAM-3 and ICAM-4.; PDB: 3BN3_B 1T0P_B 1ZXQ_A 3TCX_A 1MQ8_A 1Z7Z_I 1IC1_A 1IAM_A.
Probab=48.44 E-value=22 Score=18.89 Aligned_cols=27 Identities=19% Similarity=0.453 Sum_probs=19.3
Q ss_pred CCEEEcCCCcEEEEeEecccCCC-EEEEE
Q psy6536 13 PKVTLDIGATFVITCETVGVPTP-LVSWR 40 (67)
Q Consensus 13 ~~~~~~~g~~~~l~C~a~G~P~P-~i~W~ 40 (67)
....+..|+++.+.|..+ -|.| .+.|.
T Consensus 11 ~~~vV~~G~Sv~VNCSts-C~~p~~~GLE 38 (91)
T PF03921_consen 11 EEPVVPPGGSVWVNCSTS-CPQPEKIGLE 38 (91)
T ss_dssp SEEEEETTEEEEEEEEES-SSS-SEEEEE
T ss_pred CccEECCCCCEEEEEcCC-CCCCCcceEE
Confidence 357899999999999985 3555 34454
No 204
>PHA03271 envelope glycoprotein C; Provisional
Probab=36.91 E-value=85 Score=21.71 Aligned_cols=31 Identities=29% Similarity=0.441 Sum_probs=25.5
Q ss_pred EcCCCcEEEEeEecccCCC---EEEEEECCccCC
Q psy6536 17 LDIGATFVITCETVGVPTP---LVSWRLNWNHIP 47 (67)
Q Consensus 17 ~~~g~~~~l~C~a~G~P~P---~i~W~~~g~~~~ 47 (67)
+.+|+...=.|.|...=.| .+.|+.||..+.
T Consensus 257 VL~Ge~YkAtC~vAnYYPP~SvrlrWf~nG~~V~ 290 (490)
T PHA03271 257 VLSGENYKASCIVRHFYPPGSVYVSWRQNGNIAT 290 (490)
T ss_pred cccCCCceEEEEeeeecCCCceEEEEEeCCcccc
Confidence 4589999999999986544 788999998774
No 205
>PF11910 NdhO: Cyanobacterial and plant NDH-1 subunit O; InterPro: IPR020905 NAD(P)H-quinone oxidoreductase (NDH-1) shuttles electrons from an unknown electron donor, via FMN and iron-sulphur (Fe-S) centres, to quinones in the respiratory and/or the photosynthetic chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. It couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient. Cyanobacterial NDH-1 also plays a role in inorganic carbon-concentration. NDH-1 can be composed of about 15 different subunits, although different subcomplexes with different compositions have been identified which probably have different functions. This entry represents subunit O. ; GO: 0016655 oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor, 0055114 oxidation-reduction process, 0005886 plasma membrane
Probab=35.07 E-value=66 Score=16.22 Aligned_cols=33 Identities=33% Similarity=0.308 Sum_probs=16.4
Q ss_pred eEEeCCCCCEEEcCCCcEEEEeEecccCCCEEEEEECC
Q psy6536 6 YIKTNPPPKVTLDIGATFVITCETVGVPTPLVSWRLNW 43 (67)
Q Consensus 6 ~~~~~~~~~~~~~~g~~~~l~C~a~G~P~P~i~W~~~g 43 (67)
++-+.+.+ +....|+=+.+.- ..|+|.+ |.+-+
T Consensus 30 Yife~~GE-vl~ikgdYa~vr~---~~PtP~v-WLr~d 62 (67)
T PF11910_consen 30 YIFEGPGE-VLDIKGDYAQVRF---RVPTPDV-WLRLD 62 (67)
T ss_pred ceecCCCe-EEEecCCEEEEEe---cCCCCch-hhhhh
Confidence 34344333 3333454444432 6788877 76543
No 206
>PHA03273 envelope glycoprotein C; Provisional
Probab=33.78 E-value=1e+02 Score=21.51 Aligned_cols=31 Identities=13% Similarity=0.206 Sum_probs=25.8
Q ss_pred EcCCCcEEEEeEecccCCC---EEEEEECCccCC
Q psy6536 17 LDIGATFVITCETVGVPTP---LVSWRLNWNHIP 47 (67)
Q Consensus 17 ~~~g~~~~l~C~a~G~P~P---~i~W~~~g~~~~ 47 (67)
+.+|+...-.|.|...=.| .+.|+.||.++.
T Consensus 247 vL~Ge~y~A~C~aa~YYPp~Sv~~rWf~dg~~V~ 280 (486)
T PHA03273 247 SLKGENYRAVCVVASYFPHSSVKLRWYKNAKEVD 280 (486)
T ss_pred cccCCCceEEEEeeeecCCCceEEEEEeCCeecc
Confidence 4689999999999986544 788999999886
No 207
>COG4276 Uncharacterized conserved protein [Function unknown]
Probab=31.49 E-value=74 Score=18.52 Aligned_cols=16 Identities=19% Similarity=0.463 Sum_probs=7.8
Q ss_pred cCCCcEEEEeEecccC
Q psy6536 18 DIGATFVITCETVGVP 33 (67)
Q Consensus 18 ~~g~~~~l~C~a~G~P 33 (67)
..|..+.+.-...|.|
T Consensus 45 tqgtri~m~l~pfglp 60 (153)
T COG4276 45 TQGTRIAMGLTPFGLP 60 (153)
T ss_pred cceeeeeecceeecCC
Confidence 3455555555555543
No 208
>PF05688 DUF824: Salmonella repeat of unknown function (DUF824); InterPro: IPR008542 This family consists of a series of repeated sequences (of around 180 residues) which are found in Salmonella typhimurium, Salmonella typhi and Escherichia coli. These repeats are almost always found with this entry. The repeats are associated with RatA and RatB, the coding sequences of which are found in the pathogeneicity island of Salmonella. The sequences may be determinants of pathogenicity [, ].
Probab=30.79 E-value=67 Score=14.98 Aligned_cols=26 Identities=23% Similarity=0.442 Sum_probs=18.4
Q ss_pred EEEcCCCcEEEEeEe---cccCCCEEEEE
Q psy6536 15 VTLDIGATFVITCET---VGVPTPLVSWR 40 (67)
Q Consensus 15 ~~~~~g~~~~l~C~a---~G~P~P~i~W~ 40 (67)
..+..|+++.|.-.+ .|.|.|.....
T Consensus 7 akaK~Ge~I~ltVt~kda~G~pv~n~~f~ 35 (47)
T PF05688_consen 7 AKAKVGETIPLTVTVKDANGNPVPNAPFT 35 (47)
T ss_pred hheecCCeEEEEEEEECCCCCCcCCceEE
Confidence 457789998877643 58888876543
No 209
>TIGR02073 PBP_1c penicillin-binding protein 1C. This subfamily of the penicillin binding proteins includes the member from E. coli designated penicillin-binding protein 1C. Members have both transglycosylase and transpeptidase domains and are involved in forming cross-links in the late stages of peptidoglycan biosynthesis. All members of this subfamily are presumed to have the same basic function.
Probab=29.91 E-value=1.8e+02 Score=21.18 Aligned_cols=25 Identities=12% Similarity=0.248 Sum_probs=20.3
Q ss_pred cEEEEeEecccCCCEEEEEECCccCC
Q psy6536 22 TFVITCETVGVPTPLVSWRLNWNHIP 47 (67)
Q Consensus 22 ~~~l~C~a~G~P~P~i~W~~~g~~~~ 47 (67)
...|.+.+.| ....+.|+.||..+.
T Consensus 666 ~~~~~~~~~~-~~~~~~W~~dg~~~~ 690 (727)
T TIGR02073 666 ALLLVLIAAG-GASGLYWFLDGKLLG 690 (727)
T ss_pred cceEEEEecC-CCCceEEEECCEEec
Confidence 3568888877 778899999998874
No 210
>KOG3743|consensus
Probab=29.58 E-value=63 Score=22.94 Aligned_cols=29 Identities=17% Similarity=0.338 Sum_probs=23.5
Q ss_pred EEcCCCcEEEEeEecccCCCEEEEEECCc
Q psy6536 16 TLDIGATFVITCETVGVPTPLVSWRLNWN 44 (67)
Q Consensus 16 ~~~~g~~~~l~C~a~G~P~P~i~W~~~g~ 44 (67)
.+.-|..|.|.|.++|.-.|.+.-+|-+.
T Consensus 379 ~i~ygsvV~LV~~vTG~~lppLIIRKvdK 407 (622)
T KOG3743|consen 379 YIKYGSVVKLVCSVTGITLPPLIIRKVDK 407 (622)
T ss_pred ceeeccEEEEEeecccccCCcceeeecch
Confidence 46678899999999999988777666554
No 211
>PHA03270 envelope glycoprotein C; Provisional
Probab=29.34 E-value=2e+02 Score=20.00 Aligned_cols=31 Identities=16% Similarity=0.189 Sum_probs=25.7
Q ss_pred EcCCCcEEEEeEecccCCC---EEEEEECCccCC
Q psy6536 17 LDIGATFVITCETVGVPTP---LVSWRLNWNHIP 47 (67)
Q Consensus 17 ~~~g~~~~l~C~a~G~P~P---~i~W~~~g~~~~ 47 (67)
+.+|+...-.|.|...=.| .+.|+.||..+.
T Consensus 231 vL~Ge~Y~AtC~va~YYPp~Sv~lrWf~ng~~V~ 264 (466)
T PHA03270 231 VLEGEPFGATCVAANYYPGDRAAFRWFEGGDEVF 264 (466)
T ss_pred cccCCCceEEEEeeeecCCCceEEEEEeCCcccc
Confidence 4589999999999986544 788999999884
No 212
>COG3908 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.80 E-value=52 Score=16.79 Aligned_cols=11 Identities=45% Similarity=1.020 Sum_probs=9.5
Q ss_pred EeEecccCCCE
Q psy6536 26 TCETVGVPTPL 36 (67)
Q Consensus 26 ~C~a~G~P~P~ 36 (67)
.|.++|.|.|.
T Consensus 32 ~CAVtgk~IPl 42 (77)
T COG3908 32 LCAVTGKPIPL 42 (77)
T ss_pred EEEecCCcccH
Confidence 59999999884
No 213
>PF09065 Haemadin: Haemadin; InterPro: IPR015150 Members of this family adopt a secondary structure consisting of five short beta-strands (beta1-beta5), which are arranged in two antiparallel distorted sheets formed by strands beta1-beta4-beta5 and beta2-beta3 facing each other. This beta-sandwich is stabilised by six enclosed cysteines arranged in a [1-2, 3-5, 4-6] disulphide pairing resulting in a disulphide-rich hydrophobic core that is largely inaccessible to bulk solvent. The close proximity of disulphide bonds [3-5] and [4-6] organises haemadin into four distinct loops. The N-terminal segment of this domain binds to the active site of thrombin, inhibiting it []. ; PDB: 1E0F_K.
Probab=27.74 E-value=17 Score=14.60 Aligned_cols=9 Identities=33% Similarity=0.634 Sum_probs=2.5
Q ss_pred EecccCCCE
Q psy6536 28 ETVGVPTPL 36 (67)
Q Consensus 28 ~a~G~P~P~ 36 (67)
+.+|.|.|+
T Consensus 18 qcsgdpkps 26 (27)
T PF09065_consen 18 QCSGDPKPS 26 (27)
T ss_dssp -EES----S
T ss_pred cccCCCCCC
Confidence 456888774
No 214
>PHA03042 CD47-like protein; Provisional
Probab=26.65 E-value=1.1e+02 Score=19.88 Aligned_cols=28 Identities=25% Similarity=0.458 Sum_probs=22.1
Q ss_pred CCCcEEEEeEeccc-----CCCEEEEEECCccC
Q psy6536 19 IGATFVITCETVGV-----PTPLVSWRLNWNHI 46 (67)
Q Consensus 19 ~g~~~~l~C~a~G~-----P~P~i~W~~~g~~~ 46 (67)
=.+++.++|...-- -.=.+.|.+++..+
T Consensus 30 CN~TV~IpC~v~n~~~~ni~~~~V~Wkf~~~~I 62 (286)
T PHA03042 30 CNKTIVIVCNLNLLIYYNISNIHINWKFNNKVI 62 (286)
T ss_pred cCceEEEEeecCChhhcCccceEEEEEeCCeeE
Confidence 46789999988762 35679999999876
No 215
>PF14459 Prok-E2_C: Prokaryotic E2 family C
Probab=26.19 E-value=88 Score=17.54 Aligned_cols=22 Identities=23% Similarity=0.492 Sum_probs=17.1
Q ss_pred EcCCCcEEEEeEecccCCCEEEE
Q psy6536 17 LDIGATFVITCETVGVPTPLVSW 39 (67)
Q Consensus 17 ~~~g~~~~l~C~a~G~P~P~i~W 39 (67)
...|.+ -..|-+.|.|.|.++.
T Consensus 60 ~r~G~s-~~~clV~G~trp~~sc 81 (131)
T PF14459_consen 60 RRSGSS-PMHCLVIGSTRPKISC 81 (131)
T ss_pred EecCCC-ceEEEEecCCCCCccc
Confidence 345777 5579999999998874
No 216
>PHA02607 wac fibritin; Provisional
Probab=25.96 E-value=26 Score=24.01 Aligned_cols=16 Identities=13% Similarity=0.275 Sum_probs=13.3
Q ss_pred CCCEEEEEECCccCCC
Q psy6536 33 PTPLVSWRLNWNHIPA 48 (67)
Q Consensus 33 P~P~i~W~~~g~~~~~ 48 (67)
.+-+|.|.|||..+..
T Consensus 17 gQ~RI~WIkNGE~l~g 32 (454)
T PHA02607 17 GQTRINWIKNGECLSG 32 (454)
T ss_pred Cceeeehhhccccccc
Confidence 3679999999998854
No 217
>PHA02982 hypothetical protein; Provisional
Probab=23.75 E-value=1.5e+02 Score=18.63 Aligned_cols=29 Identities=7% Similarity=0.153 Sum_probs=19.3
Q ss_pred EEcCCCcEEEEeEec-ccCCCEEEEEECCc
Q psy6536 16 TLDIGATFVITCETV-GVPTPLVSWRLNWN 44 (67)
Q Consensus 16 ~~~~g~~~~l~C~a~-G~P~P~i~W~~~g~ 44 (67)
....+++|.|.|.-. +.-.-+..|+..++
T Consensus 35 ~a~vd~~V~L~C~~~~~~~i~~~~W~~~~~ 64 (251)
T PHA02982 35 NATVDQEVKLQCLFKDADEISRAMWKGDAG 64 (251)
T ss_pred hccCCCcEEEEecCCCcchhhhheeeCCCC
Confidence 445799999999721 22235677987654
No 218
>KOG1769|consensus
Probab=23.53 E-value=37 Score=18.46 Aligned_cols=24 Identities=17% Similarity=0.328 Sum_probs=20.6
Q ss_pred EEeEecccCCCEEEEEECCccCCC
Q psy6536 25 ITCETVGVPTPLVSWRLNWNHIPA 48 (67)
Q Consensus 25 l~C~a~G~P~P~i~W~~~g~~~~~ 48 (67)
.+|...|...=.+..+++|..|..
T Consensus 49 aYc~r~Gl~~~s~RFlFdG~rI~~ 72 (99)
T KOG1769|consen 49 AYCERQGLSMNSLRFLFDGQRIRE 72 (99)
T ss_pred HHHHHcCCccceEEEEECCcCcCC
Confidence 358888999999999999998853
No 219
>PF05428 CRF-BP: Corticotropin-releasing factor binding protein (CRF-BP); InterPro: IPR008435 This family consists of several eukaryotic corticotropin-releasing factor binding proteins (CRF-BP or CRH-BP). Corticotropin-releasing hormone (CRH) plays multiple roles in vertebrate species. In mammals, it is the major hypothalamic releasing factor for pituitary adrenocorticotropin secretion, and is a neurotransmitter or neuromodulator at other sites in the central nervous system. In non-mammalian vertebrates, CRH not only acts as a neurotransmitter and hypophysiotropin, it also acts as a potent thyrotropin-releasing factor, allowing CRH to regulate both the adrenal and thyroid axes, especially in development. CRH-BP is thought to play an inhibitory role in which it binds CRH and other CRH-like ligands and prevents the activation of CRH receptors. There is however evidence that CRH-BP may also exhibit diverse extra and intracellular roles in a cell specific fashion and at specific times in development [].
Probab=23.32 E-value=88 Score=20.49 Aligned_cols=40 Identities=23% Similarity=0.405 Sum_probs=23.9
Q ss_pred eEEeCCCCCEEEcCCCcEEEEeEecccCCCEEE-EEECCccCC
Q psy6536 6 YIKTNPPPKVTLDIGATFVITCETVGVPTPLVS-WRLNWNHIP 47 (67)
Q Consensus 6 ~~~~~~~~~~~~~~g~~~~l~C~a~G~P~P~i~-W~~~g~~~~ 47 (67)
.|+..|.+.+.+ +-+.+.+.|+.-| -.-.+. |..+|..+|
T Consensus 84 y~iaePd~~IeI-~~~~vdidC~~G~-ll~v~DGW~LnGe~FP 124 (311)
T PF05428_consen 84 YFIAEPDELIEI-EFDHVDIDCEGGD-LLKVFDGWELNGEKFP 124 (311)
T ss_pred EEEeCCCeEEEE-EEEEeeccCCCCC-EEEEEeceEECccCCc
Confidence 344445443333 3456788888744 333444 999998876
No 220
>smart00089 PKD Repeats in polycystic kidney disease 1 (PKD1) and other proteins. Polycystic kidney disease 1 protein contains 14 repeats, present elsewhere such as in microbial collagenases.
Probab=21.62 E-value=1.2e+02 Score=14.64 Aligned_cols=28 Identities=11% Similarity=0.159 Sum_probs=20.3
Q ss_pred cCCCcEEEEeEecc-cCCCEEEEEECCcc
Q psy6536 18 DIGATFVITCETVG-VPTPLVSWRLNWNH 45 (67)
Q Consensus 18 ~~g~~~~l~C~a~G-~P~P~i~W~~~g~~ 45 (67)
..++.+.|.+...+ .....+.|.+.++.
T Consensus 12 ~~~~~v~f~~~~~~~~~~~~~~W~fgdg~ 40 (79)
T smart00089 12 VAGESVTFTATSSDDGSIVSYTWDFGDGT 40 (79)
T ss_pred CCCCEEEEEEECCCCCCeEEEEEEeCCCC
Confidence 36888999888776 34567778876654
No 221
>COG3738 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.61 E-value=1.5e+02 Score=17.94 Aligned_cols=29 Identities=31% Similarity=0.461 Sum_probs=15.6
Q ss_pred EEEEEECCccCCCceeeeee--cCCe-EEEEccC
Q psy6536 36 LVSWRLNWNHIPAKCTTTSE--DGVG-TLTCPDI 66 (67)
Q Consensus 36 ~i~W~~~g~~~~~~~~~~~~--~~~g-~L~I~~v 66 (67)
.++|+.+++..- +...++ ...| -|.|.|+
T Consensus 146 IvsWRLdngl~H--iGv~sd~~~~~g~plViHNI 177 (200)
T COG3738 146 IVSWRLDNGLAH--IGVVSDGFTRDGTPLVIHNI 177 (200)
T ss_pred eEEEEcCCCCce--eEEEecCCCCCCCeEEEeec
Confidence 678998877541 222222 1223 3777775
No 222
>PF11420 Subtilosin_A: Bacteriocin subtilosin A; InterPro: IPR021539 Subtilosin A is a bacteriocin from Bacillus subtilis.The protein has a cyclized peptide backbone and forms three cross-liks between the sulphurs of Cys13, Cys7 and Cys4 and the alpha-positions of Phe22,Thr28 and Phe31 []. ; PDB: 1PXQ_A.
Probab=20.54 E-value=20 Score=15.36 Aligned_cols=14 Identities=29% Similarity=0.472 Sum_probs=3.6
Q ss_pred EEEeEecccCCCEEE
Q psy6536 24 VITCETVGVPTPLVS 38 (67)
Q Consensus 24 ~l~C~a~G~P~P~i~ 38 (67)
.-.|-+.| |.|.+.
T Consensus 10 gaacl~dg-pipdfe 23 (35)
T PF11420_consen 10 GAACLVDG-PIPDFE 23 (35)
T ss_dssp -----TTT-T---S-
T ss_pred chhhhccC-CCCcch
Confidence 34577777 776653
No 223
>PF12561 TagA: ToxR activated gene A lipoprotein; InterPro: IPR022218 This domain family is found in bacteria, and is approximately 140 amino acids in length. The family is found in association with PF10462 from PFAM. There is a conserved GAG sequence motif. This family is a bacterial lipoprotein.
Probab=20.50 E-value=1.9e+02 Score=16.67 Aligned_cols=32 Identities=28% Similarity=0.422 Sum_probs=18.8
Q ss_pred EeEecccCCCEEEEEECCccCC-----CceeeeeecCCeEE
Q psy6536 26 TCETVGVPTPLVSWRLNWNHIP-----AKCTTTSEDGVGTL 61 (67)
Q Consensus 26 ~C~a~G~P~P~i~W~~~g~~~~-----~~~~~~~~~~~g~L 61 (67)
.|++.- .|+|.++|...+ ..+...+..+.|.+
T Consensus 68 ~C~~g~----di~~~~ng~~~~~~S~~ndye~LS~~g~g~v 104 (135)
T PF12561_consen 68 RCEGGS----DIYWRINGSREPMVSALNDYEWLSLYGPGRV 104 (135)
T ss_pred eEcCCC----cEEEEecCCCccccccccccEEEeccCCCce
Confidence 455543 799999987442 24555555444543
No 224
>PF09866 DUF2093: Uncharacterized protein conserved in bacteria (DUF2093); InterPro: IPR018661 This family of various hypothetical prokaryotic proteins has no known function.
Probab=20.27 E-value=98 Score=14.17 Aligned_cols=11 Identities=36% Similarity=1.032 Sum_probs=8.9
Q ss_pred EEeEecccCCC
Q psy6536 25 ITCETVGVPTP 35 (67)
Q Consensus 25 l~C~a~G~P~P 35 (67)
..|.++|.+-|
T Consensus 8 V~CAVTg~~Ip 18 (42)
T PF09866_consen 8 VRCAVTGQPIP 18 (42)
T ss_pred EEEEeeCCccc
Confidence 36999998877
No 225
>PF01681 C6: C6 domain; InterPro: IPR002601 This domain of unknown function is found at the C terminus in a number of Caenorhabditis elegans and Caenorhabditis briggsae proteins. It may be an extracellular domain. Most copies of the C6 domain contain six conserved cysteine residues. However some copies of the domain are missing cysteine residues 1 and 3 suggesting that these form a disulphide bridge. In Q19522 from SWISSPROT there are 18 copies of the domain.
Probab=20.12 E-value=93 Score=16.01 Aligned_cols=19 Identities=32% Similarity=0.581 Sum_probs=12.5
Q ss_pred cEEEEeEecccCCCEEEEEE-CCccC
Q psy6536 22 TFVITCETVGVPTPLVSWRL-NWNHI 46 (67)
Q Consensus 22 ~~~l~C~a~G~P~P~i~W~~-~g~~~ 46 (67)
++.|.|.+.|. |.. .|..+
T Consensus 68 t~~ltCn~~g~------W~y~~g~~I 87 (92)
T PF01681_consen 68 TITLTCNADGQ------WVYTYGRVI 87 (92)
T ss_pred EEEEEecCCCE------EEECCCEEE
Confidence 36788887773 877 55433
Done!