Your job contains 1 sequence.
>psy6536
MTSPAYIKTNPPPKVTLDIGATFVITCETVGVPTPLVSWRLNWNHIPAKCTTTSEDGVGT
LTCPDIQ
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy6536
(67 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
ZFIN|ZDB-GENE-080807-4 - symbol:hspg2 "heparan sulfate pr... 166 1.8e-10 1
UNIPROTKB|F1MER7 - symbol:HSPG2 "Uncharacterized protein"... 164 3.8e-10 1
FB|FBgn0261451 - symbol:trol "terribly reduced optic lobe... 160 1.1e-09 1
MGI|MGI:96257 - symbol:Hspg2 "perlecan (heparan sulfate p... 159 1.1e-09 1
UNIPROTKB|P98160 - symbol:HSPG2 "Basement membrane-specif... 159 1.3e-09 1
WB|WBGene00006787 - symbol:unc-52 species:6239 "Caenorhab... 154 3.4e-09 1
UNIPROTKB|Q06561 - symbol:unc-52 "Basement membrane prote... 154 3.4e-09 1
FB|FBgn0025878 - symbol:wrapper "wrapper" species:7227 "D... 94 0.00090 1
>ZFIN|ZDB-GENE-080807-4 [details] [associations]
symbol:hspg2 "heparan sulfate proteoglycan 2"
species:7955 "Danio rerio" [GO:0007519 "skeletal muscle tissue
development" evidence=IMP] [GO:0001525 "angiogenesis" evidence=IMP]
InterPro:IPR000742 InterPro:IPR002172 InterPro:IPR007110
Pfam:PF00008 Pfam:PF00057 PROSITE:PS50026 PROSITE:PS50068
PROSITE:PS50835 SMART:SM00181 SMART:SM00192 ZFIN:ZDB-GENE-080807-4
Gene3D:2.60.40.10 InterPro:IPR013783 InterPro:IPR003599
SMART:SM00409 InterPro:IPR003598 SMART:SM00408 GO:GO:0001525
InterPro:IPR013032 PROSITE:PS00022 Gene3D:2.60.120.200
InterPro:IPR008985 InterPro:IPR013320 SUPFAM:SSF49899
PROSITE:PS01186 Gene3D:4.10.400.10 InterPro:IPR023415
SUPFAM:SSF57424 PROSITE:PS01209 InterPro:IPR002049
InterPro:IPR001791 InterPro:IPR000082 Pfam:PF00053 Pfam:PF00054
SMART:SM00180 SMART:SM00282 PROSITE:PS01248 PROSITE:PS50027
PROSITE:PS50025 PROSITE:PS50024 GeneTree:ENSGT00530000063501
InterPro:IPR013098 Pfam:PF07679 InterPro:IPR009030 SUPFAM:SSF57184
Pfam:PF02210 GO:GO:0007519 Pfam:PF12661 InterPro:IPR018031
InterPro:IPR000034 Pfam:PF00052 SMART:SM00281 PROSITE:PS51115
EMBL:CR936463 EMBL:CR855310 IPI:IPI00889358
Ensembl:ENSDART00000111029 Bgee:F1RCP6 Uniprot:F1RCP6
Length = 3422
Score = 166 (63.5 bits), Expect = 1.8e-10, P = 1.8e-10
Identities = 29/67 (43%), Positives = 41/67 (61%)
Query: 3 SPAYIKTNPPPKVTLDIGATFVITCETVGVPTPLVSWRLNWNHIPA--KCTTTSEDGVGT 60
+P + +P +T G T TC +GVP P+++WRLNW HIPA + T SE+G GT
Sbjct: 318 APPTVTVSPEESITASRGDTVTFTCSAIGVPVPIITWRLNWGHIPANNRITMISENGQGT 377
Query: 61 LTCPDIQ 67
LT D++
Sbjct: 378 LTIRDVK 384
>UNIPROTKB|F1MER7 [details] [associations]
symbol:HSPG2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0060351 "cartilage development involved in endochondral
bone morphogenesis" evidence=IEA] [GO:0048738 "cardiac muscle
tissue development" evidence=IEA] [GO:0048704 "embryonic skeletal
system morphogenesis" evidence=IEA] [GO:0030198 "extracellular
matrix organization" evidence=IEA] [GO:0008104 "protein
localization" evidence=IEA] [GO:0008022 "protein C-terminus
binding" evidence=IEA] [GO:0007420 "brain development"
evidence=IEA] [GO:0005615 "extracellular space" evidence=IEA]
[GO:0005605 "basal lamina" evidence=IEA] [GO:0002062 "chondrocyte
differentiation" evidence=IEA] [GO:0001958 "endochondral
ossification" evidence=IEA] InterPro:IPR000742 InterPro:IPR002172
InterPro:IPR007110 Pfam:PF00008 Pfam:PF00057 PROSITE:PS50026
PROSITE:PS50068 PROSITE:PS50835 SMART:SM00181 SMART:SM00192
GO:GO:0005615 GO:GO:0008104 GO:GO:0007420 Gene3D:2.60.40.10
InterPro:IPR013783 InterPro:IPR003598 SMART:SM00408 GO:GO:0030198
InterPro:IPR013032 PROSITE:PS00022 GO:GO:0048738
Gene3D:2.60.120.200 InterPro:IPR008985 InterPro:IPR013320
SUPFAM:SSF49899 GO:GO:0005605 PROSITE:PS01186 Gene3D:4.10.400.10
InterPro:IPR023415 SUPFAM:SSF57424 PROSITE:PS01209
InterPro:IPR002049 InterPro:IPR001791 InterPro:IPR000082
Pfam:PF00053 Pfam:PF00054 SMART:SM00180 SMART:SM00282 SMART:SM00200
PROSITE:PS01248 PROSITE:PS50027 PROSITE:PS50025 PROSITE:PS50024
GeneTree:ENSGT00530000063501 InterPro:IPR013098 Pfam:PF07679
GO:GO:0048704 GO:GO:0002062 GO:GO:0001958 Pfam:PF02210
GO:GO:0060351 Pfam:PF12661 InterPro:IPR018031 InterPro:IPR000034
Pfam:PF00052 SMART:SM00281 PROSITE:PS51115 OMA:GVTQQCA
EMBL:DAAA02006470 EMBL:DAAA02006471 IPI:IPI01000857 IntAct:F1MER7
Ensembl:ENSBTAT00000022744 Uniprot:F1MER7
Length = 4374
Score = 164 (62.8 bits), Expect = 3.8e-10, P = 3.8e-10
Identities = 30/66 (45%), Positives = 40/66 (60%)
Query: 4 PAYIKTNPPPKVTLDIGATFVITCETVGVPTPLVSWRLNWNHIPA--KCTTTSEDGVGTL 61
P + T P + G T TC +GVPTP+++WRLNW HIP+ + T TSE G GTL
Sbjct: 384 PPQVVTPPQELIQASRGQTVTFTCVAIGVPTPIINWRLNWGHIPSHPRVTVTSEGGRGTL 443
Query: 62 TCPDIQ 67
T D++
Sbjct: 444 TIHDVK 449
>FB|FBgn0261451 [details] [associations]
symbol:trol "terribly reduced optic lobes" species:7227
"Drosophila melanogaster" [GO:0005578 "proteinaceous extracellular
matrix" evidence=NAS] [GO:0005604 "basement membrane" evidence=ISS]
[GO:0055059 "asymmetric neuroblast division" evidence=NAS]
[GO:0045199 "maintenance of epithelial cell apical/basal polarity"
evidence=IMP] [GO:0005811 "lipid particle" evidence=IDA]
[GO:0072347 "response to anesthetic" evidence=IMP]
InterPro:IPR000742 InterPro:IPR002172 InterPro:IPR007110
Pfam:PF00008 Pfam:PF00057 PROSITE:PS50026 PROSITE:PS50068
PROSITE:PS50835 SMART:SM00181 SMART:SM00192 Gene3D:2.60.40.10
InterPro:IPR013783 GO:GO:0005811 EMBL:AE014298 InterPro:IPR003599
SMART:SM00409 InterPro:IPR003598 SMART:SM00408 InterPro:IPR013032
PROSITE:PS00022 Gene3D:2.60.120.200 InterPro:IPR008985
InterPro:IPR013320 SUPFAM:SSF49899 PROSITE:PS01186
Gene3D:4.10.400.10 InterPro:IPR023415 SUPFAM:SSF57424
PROSITE:PS01209 InterPro:IPR002049 InterPro:IPR001791 Pfam:PF00053
Pfam:PF00054 SMART:SM00180 SMART:SM00282 PROSITE:PS01248
PROSITE:PS50027 PROSITE:PS50025 GO:GO:0005604 InterPro:IPR013098
Pfam:PF07679 GO:GO:0045199 GO:GO:0072347 InterPro:IPR009030
SUPFAM:SSF57184 Pfam:PF02210 InterPro:IPR018031 InterPro:IPR000034
Pfam:PF00052 SMART:SM00281 PROSITE:PS51115 UniGene:Dm.14114
GeneID:45320 KEGG:dme:Dmel_CG33950 CTD:45320 FlyBase:FBgn0261451
ChiTaRS:trol GenomeRNAi:45320 NextBio:838006 RefSeq:NP_001027038.2
ProteinModelPortal:Q9W4Y3 SMR:Q9W4Y3 STRING:Q9W4Y3 PRIDE:Q9W4Y3
UCSC:CG33950-RF InParanoid:Q9W4Y3 PhylomeDB:Q9W4Y3
ArrayExpress:Q9W4Y3 Bgee:Q9W4Y3 Uniprot:Q9W4Y3
Length = 4629
Score = 160 (61.4 bits), Expect = 1.1e-09, P = 1.1e-09
Identities = 29/64 (45%), Positives = 38/64 (59%)
Query: 5 AYIKTNPPPK-VTLDIGATFVITCETVGVPTPLVSWRLNWNHIPAKCTTTSEDGVGTLTC 63
A + PPP+ V+L +TC G PTP + WRLNW H+P KC + S G GTL C
Sbjct: 1736 APLPIRPPPQSVSLLEYEVLELTCVATGTPTPTIVWRLNWGHVPDKCESKSYGGTGTLRC 1795
Query: 64 PDIQ 67
PD++
Sbjct: 1796 PDMR 1799
>MGI|MGI:96257 [details] [associations]
symbol:Hspg2 "perlecan (heparan sulfate proteoglycan 2)"
species:10090 "Mus musculus" [GO:0001525 "angiogenesis"
evidence=IEA] [GO:0001958 "endochondral ossification" evidence=IMP]
[GO:0002062 "chondrocyte differentiation" evidence=IMP] [GO:0005515
"protein binding" evidence=IPI] [GO:0005576 "extracellular region"
evidence=IEA] [GO:0005578 "proteinaceous extracellular matrix"
evidence=IDA] [GO:0005604 "basement membrane" evidence=IDA]
[GO:0005605 "basal lamina" evidence=IDA] [GO:0005615 "extracellular
space" evidence=ISO] [GO:0007420 "brain development" evidence=IMP]
[GO:0008022 "protein C-terminus binding" evidence=ISO] [GO:0008104
"protein localization" evidence=IMP] [GO:0030198 "extracellular
matrix organization" evidence=IMP] [GO:0031012 "extracellular
matrix" evidence=IDA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0048704 "embryonic skeletal system morphogenesis" evidence=IMP]
[GO:0048738 "cardiac muscle tissue development" evidence=IMP]
[GO:0060351 "cartilage development involved in endochondral bone
morphogenesis" evidence=IMP] [GO:0070062 "extracellular vesicular
exosome" evidence=ISO] Reactome:REACT_112621 InterPro:IPR000742
InterPro:IPR002172 InterPro:IPR007110 Pfam:PF00008 Pfam:PF00057
PROSITE:PS50026 PROSITE:PS50068 PROSITE:PS50835 SMART:SM00181
SMART:SM00192 MGI:MGI:96257 GO:GO:0008104 GO:GO:0007420
Gene3D:2.60.40.10 InterPro:IPR013783 GO:GO:0046872
InterPro:IPR003599 SMART:SM00409 InterPro:IPR003598 SMART:SM00408
GO:GO:0030198 GO:GO:0001525 InterPro:IPR013032 PROSITE:PS00022
GO:GO:0048738 Gene3D:2.60.120.200 InterPro:IPR008985
InterPro:IPR013320 SUPFAM:SSF49899 GO:GO:0005605 PROSITE:PS01186
Reactome:REACT_118324 Gene3D:4.10.400.10 InterPro:IPR023415
SUPFAM:SSF57424 PROSITE:PS01209 InterPro:IPR002049
InterPro:IPR001791 InterPro:IPR000082 Pfam:PF00053 Pfam:PF00054
SMART:SM00180 SMART:SM00282 SMART:SM00200 PROSITE:PS01248
PROSITE:PS50027 PROSITE:PS50025 PROSITE:PS50024 GO:GO:0005796
InterPro:IPR013098 Pfam:PF07679 GO:GO:0048704 GO:GO:0002062
GO:GO:0001958 Pfam:PF02210 GO:GO:0060351 InterPro:IPR018031
InterPro:IPR000034 Pfam:PF00052 SMART:SM00281 PROSITE:PS51115
PDB:1GL4 PDBsum:1GL4 CTD:3339 eggNOG:NOG258321 HOGENOM:HOG000049276
HOVERGEN:HBG008174 KO:K06255 EMBL:M77174 EMBL:J04054 EMBL:J04055
IPI:IPI00113824 PIR:S18252 RefSeq:NP_032331.2 UniGene:Mm.273662
ProteinModelPortal:Q05793 SMR:Q05793 IntAct:Q05793 MINT:MINT-215413
STRING:Q05793 PhosphoSite:Q05793 PaxDb:Q05793 PRIDE:Q05793
GeneID:15530 KEGG:mmu:15530 EvolutionaryTrace:Q05793 NextBio:288458
CleanEx:MM_HSPG2 Genevestigator:Q05793
GermOnline:ENSMUSG00000028763 Uniprot:Q05793
Length = 3707
Score = 159 (61.0 bits), Expect = 1.1e-09, P = 1.1e-09
Identities = 30/66 (45%), Positives = 38/66 (57%)
Query: 4 PAYIKTNPPPKVTLDIGATFVITCETVGVPTPLVSWRLNWNHIPA--KCTTTSEDGVGTL 61
P + T P + G T TC GVPTP+++WRLNW HIPA + T TSE G GTL
Sbjct: 405 PPQVVTPPQQSIQASRGQTVTFTCVATGVPTPIINWRLNWGHIPAHPRVTMTSEGGRGTL 464
Query: 62 TCPDIQ 67
D++
Sbjct: 465 IIRDVK 470
>UNIPROTKB|P98160 [details] [associations]
symbol:HSPG2 "Basement membrane-specific heparan sulfate
proteoglycan core protein" species:9606 "Homo sapiens" [GO:0001525
"angiogenesis" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0001958 "endochondral ossification" evidence=IEA]
[GO:0002062 "chondrocyte differentiation" evidence=IEA] [GO:0005605
"basal lamina" evidence=IEA] [GO:0007420 "brain development"
evidence=IEA] [GO:0008104 "protein localization" evidence=IEA]
[GO:0030198 "extracellular matrix organization" evidence=IEA]
[GO:0048704 "embryonic skeletal system morphogenesis" evidence=IEA]
[GO:0048738 "cardiac muscle tissue development" evidence=IEA]
[GO:0060351 "cartilage development involved in endochondral bone
morphogenesis" evidence=IEA] [GO:0008022 "protein C-terminus
binding" evidence=IPI] [GO:0005515 "protein binding" evidence=IPI]
[GO:0070062 "extracellular vesicular exosome" evidence=IDA]
[GO:0005576 "extracellular region" evidence=TAS] [GO:0005796 "Golgi
lumen" evidence=TAS] [GO:0005886 "plasma membrane" evidence=TAS]
[GO:0005975 "carbohydrate metabolic process" evidence=TAS]
[GO:0006024 "glycosaminoglycan biosynthetic process" evidence=TAS]
[GO:0006027 "glycosaminoglycan catabolic process" evidence=TAS]
[GO:0006629 "lipid metabolic process" evidence=TAS] [GO:0030203
"glycosaminoglycan metabolic process" evidence=TAS] [GO:0030204
"chondroitin sulfate metabolic process" evidence=TAS] [GO:0042157
"lipoprotein metabolic process" evidence=TAS] [GO:0043202
"lysosomal lumen" evidence=TAS] [GO:0044281 "small molecule
metabolic process" evidence=TAS] [GO:0005615 "extracellular space"
evidence=IDA] [GO:0031012 "extracellular matrix" evidence=ISS;IDA]
Reactome:REACT_111217 InterPro:IPR000742 InterPro:IPR002172
InterPro:IPR007110 Pfam:PF00008 Pfam:PF00057 PROSITE:PS50026
PROSITE:PS50068 PROSITE:PS50835 SMART:SM00181 SMART:SM00192
GO:GO:0005886 Reactome:REACT_116125 GO:GO:0005615 GO:GO:0008104
GO:GO:0007420 Gene3D:2.60.40.10 InterPro:IPR013783 GO:GO:0046872
GO:GO:0005975 GO:GO:0070062 InterPro:IPR003598 SMART:SM00408
DrugBank:DB00102 GO:GO:0006629 GO:GO:0030198 GO:GO:0001525
GO:GO:0042157 InterPro:IPR013032 PROSITE:PS00022 GO:GO:0048738
Gene3D:2.60.120.200 InterPro:IPR008985 InterPro:IPR013320
SUPFAM:SSF49899 GO:GO:0005605 PROSITE:PS01186 Gene3D:4.10.400.10
InterPro:IPR023415 SUPFAM:SSF57424 PROSITE:PS01209 GO:GO:0043202
InterPro:IPR002049 InterPro:IPR001791 InterPro:IPR000082
Pfam:PF00053 Pfam:PF00054 SMART:SM00180 SMART:SM00282 SMART:SM00200
PROSITE:PS01248 PROSITE:PS50027 PROSITE:PS50025 PROSITE:PS50024
GO:GO:0005796 GO:GO:0030204 GO:GO:0006024 GO:GO:0006027
InterPro:IPR013098 Pfam:PF07679 GO:GO:0048704 GO:GO:0002062
GO:GO:0001958 Pfam:PF02210 GO:GO:0060351 Pfam:PF12661 EMBL:AL590556
DrugBank:DB00039 InterPro:IPR018031 InterPro:IPR000034 Pfam:PF00052
SMART:SM00281 PROSITE:PS51115 EMBL:AL590103 EMBL:M85289 EMBL:X62515
EMBL:L22078 EMBL:AL445795 EMBL:S76436 EMBL:M64283 IPI:IPI00024284
PIR:A38096 RefSeq:NP_005520.4 UniGene:Hs.562227 PDB:3SH4 PDB:3SH5
PDBsum:3SH4 PDBsum:3SH5 ProteinModelPortal:P98160 SMR:P98160
IntAct:P98160 MINT:MINT-123304 STRING:P98160 PhosphoSite:P98160
DMDM:218512120 DOSAC-COBS-2DPAGE:P98160 PaxDb:P98160 PRIDE:P98160
Ensembl:ENST00000374695 GeneID:3339 KEGG:hsa:3339 UCSC:uc001bfj.3
CTD:3339 GeneCards:GC01M022148 H-InvDB:HIX0023554
H-InvDB:HIX0023598 HGNC:HGNC:5273 HPA:CAB009820 HPA:CAB020718
HPA:HPA018892 MIM:142461 MIM:224410 MIM:255800 neXtProt:NX_P98160
Orphanet:1865 Orphanet:800 PharmGKB:PA29537 eggNOG:NOG258321
HOGENOM:HOG000049276 HOVERGEN:HBG008174 InParanoid:P98160 KO:K06255
OMA:GVTQQCA OrthoDB:EOG44QT00 ChiTaRS:HSPG2 GenomeRNAi:3339
NextBio:13216 ArrayExpress:P98160 Bgee:P98160 CleanEx:HS_HSPG2
Genevestigator:P98160 GermOnline:ENSG00000142798 Uniprot:P98160
Length = 4391
Score = 159 (61.0 bits), Expect = 1.3e-09, P = 1.3e-09
Identities = 29/66 (43%), Positives = 39/66 (59%)
Query: 4 PAYIKTNPPPKVTLDIGATFVITCETVGVPTPLVSWRLNWNHIPA--KCTTTSEDGVGTL 61
P + T P + G T TC +GVPTP+++WRLNW HIP+ + T TSE G GTL
Sbjct: 405 PPQVVTPPRESIQASRGQTVTFTCVAIGVPTPIINWRLNWGHIPSHPRVTVTSEGGRGTL 464
Query: 62 TCPDIQ 67
D++
Sbjct: 465 IIRDVK 470
>WB|WBGene00006787 [details] [associations]
symbol:unc-52 species:6239 "Caenorhabditis elegans"
[GO:0005509 "calcium ion binding" evidence=IEA] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IGI;IMP]
[GO:0008340 "determination of adult lifespan" evidence=IMP]
[GO:0040011 "locomotion" evidence=IMP] [GO:0040010 "positive
regulation of growth rate" evidence=IMP] [GO:0002119 "nematode
larval development" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0061199 "striated muscle contraction involved in
embryonic body morphogenesis" evidence=IMP] [GO:0018996 "molting
cycle, collagen and cuticulin-based cuticle" evidence=IMP]
[GO:0006898 "receptor-mediated endocytosis" evidence=IMP]
[GO:0016358 "dendrite development" evidence=IMP] [GO:0030163
"protein catabolic process" evidence=IMP] [GO:0007517 "muscle organ
development" evidence=IMP] [GO:0007173 "epidermal growth factor
receptor signaling pathway" evidence=IGI] [GO:0016477 "cell
migration" evidence=IGI] [GO:0048644 "muscle organ morphogenesis"
evidence=IGI] [GO:0005604 "basement membrane" evidence=IDA]
[GO:0005198 "structural molecule activity" evidence=ISS]
[GO:0031581 "hemidesmosome assembly" evidence=IGI] [GO:0040017
"positive regulation of locomotion" evidence=IMP]
InterPro:IPR000742 InterPro:IPR002172 InterPro:IPR007110
Pfam:PF00057 PROSITE:PS50026 PROSITE:PS50068 PROSITE:PS50835
SMART:SM00181 SMART:SM00192 EMBL:Z93375 GO:GO:0008340 GO:GO:0009792
GO:GO:0006898 GO:GO:0040010 GO:GO:0007173 Gene3D:2.60.40.10
InterPro:IPR013783 GO:GO:0016477 GO:GO:0002119 GO:GO:0048644
GO:GO:0005198 GO:GO:0018996 InterPro:IPR003599 SMART:SM00409
InterPro:IPR003598 SMART:SM00408 GO:GO:0016358 GO:GO:0040017
GO:GO:0000003 InterPro:IPR013032 PROSITE:PS00022
Gene3D:2.60.120.200 InterPro:IPR008985 InterPro:IPR013320
SUPFAM:SSF49899 GO:GO:0030239 GO:GO:0030163 PROSITE:PS01186
Gene3D:4.10.400.10 InterPro:IPR023415 SUPFAM:SSF57424
PROSITE:PS01209 InterPro:IPR002049 InterPro:IPR001791 Pfam:PF00053
SMART:SM00180 SMART:SM00282 PROSITE:PS01248 PROSITE:PS50027
PROSITE:PS50025 GeneTree:ENSGT00530000063501 GO:GO:0005604
InterPro:IPR013098 Pfam:PF07679 InterPro:IPR009030 SUPFAM:SSF57184
Pfam:PF02210 GO:GO:0031581 InterPro:IPR018031 InterPro:IPR000034
Pfam:PF00052 SMART:SM00281 PROSITE:PS51115 GO:GO:0061199
eggNOG:NOG258321 OMA:GVTQQCA EMBL:L13458 EMBL:Z93395 EMBL:AF132883
PIR:C88369 PIR:F88369 PIR:T19821 RefSeq:NP_001022488.1
RefSeq:NP_497044.3 RefSeq:NP_497045.1 RefSeq:NP_497046.1
RefSeq:NP_497047.1 ProteinModelPortal:Q06561 SMR:Q06561
IntAct:Q06561 STRING:Q06561 PaxDb:Q06561 PRIDE:Q06561
EnsemblMetazoa:ZC101.2e GeneID:175126 KEGG:cel:CELE_ZC101.2
UCSC:ZC101.2e CTD:175126 WormBase:ZC101.2a WormBase:ZC101.2b
WormBase:ZC101.2c WormBase:ZC101.2e WormBase:ZC101.2f
InParanoid:Q06561 NextBio:886870 ArrayExpress:Q06561 Uniprot:Q06561
Length = 3375
Score = 154 (59.3 bits), Expect = 3.4e-09, P = 3.4e-09
Identities = 29/60 (48%), Positives = 37/60 (61%)
Query: 12 PPKVTLDI--GATFVITCETVGVPTPLVSWRLNWNHI--PAKCTTTSEDGVGTLTCPDIQ 67
PP+ L + G TF +TC+ V VP P ++WRLNW + P +C TSE G GTLT D Q
Sbjct: 276 PPQTNLQVPRGTTFSLTCKAVAVPEPYINWRLNWGPVCEPPRCLQTSEGGYGTLTIHDAQ 335
>UNIPROTKB|Q06561 [details] [associations]
symbol:unc-52 "Basement membrane proteoglycan" species:6239
"Caenorhabditis elegans" [GO:0003674 "molecular_function"
evidence=ND] [GO:0030239 "myofibril assembly" evidence=IEP]
[GO:0005578 "proteinaceous extracellular matrix" evidence=IDA]
InterPro:IPR000742 InterPro:IPR002172 InterPro:IPR007110
Pfam:PF00057 PROSITE:PS50026 PROSITE:PS50068 PROSITE:PS50835
SMART:SM00181 SMART:SM00192 EMBL:Z93375 GO:GO:0008340 GO:GO:0009792
GO:GO:0006898 GO:GO:0040010 GO:GO:0007173 Gene3D:2.60.40.10
InterPro:IPR013783 GO:GO:0016477 GO:GO:0002119 GO:GO:0048644
GO:GO:0005198 GO:GO:0018996 InterPro:IPR003599 SMART:SM00409
InterPro:IPR003598 SMART:SM00408 GO:GO:0016358 GO:GO:0040017
GO:GO:0000003 InterPro:IPR013032 PROSITE:PS00022
Gene3D:2.60.120.200 InterPro:IPR008985 InterPro:IPR013320
SUPFAM:SSF49899 GO:GO:0030239 GO:GO:0030163 PROSITE:PS01186
Gene3D:4.10.400.10 InterPro:IPR023415 SUPFAM:SSF57424
PROSITE:PS01209 InterPro:IPR002049 InterPro:IPR001791 Pfam:PF00053
SMART:SM00180 SMART:SM00282 PROSITE:PS01248 PROSITE:PS50027
PROSITE:PS50025 GeneTree:ENSGT00530000063501 GO:GO:0005604
InterPro:IPR013098 Pfam:PF07679 InterPro:IPR009030 SUPFAM:SSF57184
Pfam:PF02210 GO:GO:0031581 InterPro:IPR018031 InterPro:IPR000034
Pfam:PF00052 SMART:SM00281 PROSITE:PS51115 GO:GO:0061199
eggNOG:NOG258321 OMA:GVTQQCA EMBL:L13458 EMBL:Z93395 EMBL:AF132883
PIR:C88369 PIR:F88369 PIR:T19821 RefSeq:NP_001022488.1
RefSeq:NP_497044.3 RefSeq:NP_497045.1 RefSeq:NP_497046.1
RefSeq:NP_497047.1 ProteinModelPortal:Q06561 SMR:Q06561
IntAct:Q06561 STRING:Q06561 PaxDb:Q06561 PRIDE:Q06561
EnsemblMetazoa:ZC101.2e GeneID:175126 KEGG:cel:CELE_ZC101.2
UCSC:ZC101.2e CTD:175126 WormBase:ZC101.2a WormBase:ZC101.2b
WormBase:ZC101.2c WormBase:ZC101.2e WormBase:ZC101.2f
InParanoid:Q06561 NextBio:886870 ArrayExpress:Q06561 Uniprot:Q06561
Length = 3375
Score = 154 (59.3 bits), Expect = 3.4e-09, P = 3.4e-09
Identities = 29/60 (48%), Positives = 37/60 (61%)
Query: 12 PPKVTLDI--GATFVITCETVGVPTPLVSWRLNWNHI--PAKCTTTSEDGVGTLTCPDIQ 67
PP+ L + G TF +TC+ V VP P ++WRLNW + P +C TSE G GTLT D Q
Sbjct: 276 PPQTNLQVPRGTTFSLTCKAVAVPEPYINWRLNWGPVCEPPRCLQTSEGGYGTLTIHDAQ 335
>FB|FBgn0025878 [details] [associations]
symbol:wrapper "wrapper" species:7227 "Drosophila
melanogaster" [GO:0019897 "extrinsic to plasma membrane"
evidence=ISS] [GO:0042063 "gliogenesis" evidence=IMP] [GO:0007399
"nervous system development" evidence=IEP] [GO:0007409
"axonogenesis" evidence=IMP] [GO:0005886 "plasma membrane"
evidence=IDA] InterPro:IPR003961 InterPro:IPR007110 Pfam:PF00041
PROSITE:PS50835 PROSITE:PS50853 SMART:SM00060 EMBL:AE013599
Gene3D:2.60.40.10 InterPro:IPR013783 SUPFAM:SSF49265
InterPro:IPR003599 SMART:SM00409 InterPro:IPR003598 SMART:SM00408
GO:GO:0019897 GO:GO:0007409 InterPro:IPR013098 Pfam:PF07679
GeneTree:ENSGT00650000092858 InterPro:IPR013106 Pfam:PF07686
GO:GO:0042063 HSSP:Q96KP7 EMBL:AY047524 RefSeq:NP_477404.1
UniGene:Dm.4663 SMR:Q9W260 STRING:Q9W260 EnsemblMetazoa:FBtr0071821
GeneID:37555 KEGG:dme:Dmel_CG10382 UCSC:CG10382-RA CTD:37555
FlyBase:FBgn0025878 eggNOG:NOG289467 InParanoid:Q9W260 OMA:WTELTIP
OrthoDB:EOG46Q58J GenomeRNAi:37555 NextBio:804260 Uniprot:Q9W260
Length = 500
Score = 94 (38.1 bits), Expect = 0.00090, P = 0.00090
Identities = 17/34 (50%), Positives = 22/34 (64%)
Query: 19 IGATFVITCETVGVPTPLVSWRLNWNHIPAKCTT 52
IGA F + CE GVP P+++WRLN N I + T
Sbjct: 146 IGAIFEVVCEAQGVPQPVITWRLNGNVIQPQSNT 179
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.317 0.134 0.443 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 67 67 0.00091 102 3 11 22 0.49 28
29 0.49 28
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 8
No. of states in DFA: 516 (55 KB)
Total size of DFA: 107 KB (2074 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 9.14u 0.11s 9.25t Elapsed: 00:00:00
Total cpu time: 9.14u 0.11s 9.25t Elapsed: 00:00:00
Start: Thu Aug 15 17:00:13 2013 End: Thu Aug 15 17:00:13 2013