RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6536
(67 letters)
>2va4_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; transmembrane,
phosphorylation, immunoglobulin domain, membrane,
glycoprotein; HET: NAG; 1.9A {Homo sapiens} PDB:
2xy1_A*
Length = 192
Score = 42.1 bits (99), Expect = 1e-06
Identities = 15/66 (22%), Positives = 21/66 (31%)
Query: 2 TSPAYIKTNPPPKVTLDIGATFVITCETVGVPTPLVSWRLNWNHIPAKCTTTSEDGVGTL 61
+ PA T + G +C G P P +SW N I + L
Sbjct: 1 SMPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTEL 60
Query: 62 TCPDIQ 67
T +I
Sbjct: 61 TVRNII 66
Score = 34.8 bits (80), Expect = 6e-04
Identities = 9/65 (13%), Positives = 20/65 (30%), Gaps = 9/65 (13%)
Query: 12 PPKVTLDIGATFVITCETVGVPTPLVSWRLNWNHIP---------AKCTTTSEDGVGTLT 62
T + C+ G P P ++W+ + + + G +L
Sbjct: 101 LKNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLH 160
Query: 63 CPDIQ 67
D++
Sbjct: 161 IKDVK 165
>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL
structural protein; 3.30A {Oryctolagus cuniculus}
Length = 570
Score = 42.1 bits (99), Expect = 2e-06
Identities = 11/67 (16%), Positives = 18/67 (26%), Gaps = 2/67 (2%)
Query: 3 SPAYIKTNPPPKVTLDIGATFVITCETVGVPTPLVSWRLNWNHIPA--KCTTTSEDGVGT 60
P P + C+ G P V W + I K + + V
Sbjct: 289 EPPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAV 348
Query: 61 LTCPDIQ 67
L ++
Sbjct: 349 LEMYNLS 355
Score = 40.2 bits (94), Expect = 8e-06
Identities = 10/56 (17%), Positives = 19/56 (33%), Gaps = 2/56 (3%)
Query: 9 TNPPPKVTLDIGATFVITCETVGVPTPLVSWRLNWNHIPA--KCTTTSEDGVGTLT 62
P V IG + C+ G P ++W + + ++ V +L
Sbjct: 9 IEPLEHVEAAIGEPITLQCKVDGTPEIRIAWYKEHTKLRSAPAYKMQFKNNVASLV 64
Score = 37.9 bits (88), Expect = 5e-05
Identities = 14/61 (22%), Positives = 24/61 (39%), Gaps = 2/61 (3%)
Query: 9 TNPPPKVTLDIGATFVITCETVGVPTPLVSWRLNWNHIPA--KCTTTSEDGVGTLTCPDI 66
P V GA + CE G P VSW + + + K SE+ + ++ ++
Sbjct: 388 RKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNV 447
Query: 67 Q 67
Sbjct: 448 D 448
Score = 37.9 bits (88), Expect = 5e-05
Identities = 12/59 (20%), Positives = 19/59 (32%), Gaps = 2/59 (3%)
Query: 11 PPPKVTLDIGATFVITCETVGVPTPLVSWRLNWNHIPA--KCTTTSEDGVGTLTCPDIQ 67
P V L +G + C G ++W + I T + TLT +
Sbjct: 203 KPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVT 261
Score = 37.9 bits (88), Expect = 6e-05
Identities = 12/55 (21%), Positives = 16/55 (29%), Gaps = 2/55 (3%)
Query: 9 TNPPPKVTLDIGATFVITCETVGVPTPLVSWRLNWNHIP--AKCTTTSEDGVGTL 61
V +G C G VSW + + A T+ V TL
Sbjct: 105 ARKLKDVHETLGFPVAFECRINGSEPLQVSWYKDGELLKDDANLQTSFIHNVATL 159
Score = 36.7 bits (85), Expect = 2e-04
Identities = 7/62 (11%), Positives = 17/62 (27%), Gaps = 3/62 (4%)
Query: 9 TNPPPKVTLDIGATFVITCETVGVPTPLVSWRLNWNHIPA---KCTTTSEDGVGTLTCPD 65
++ +G + G V+W + I + + + TL
Sbjct: 481 VKKLSDISTVVGEEVQLQATIEGAEPISVAWFKDKGEIVRESDNIWISYSENIATLQFSR 540
Query: 66 IQ 67
+
Sbjct: 541 AE 542
>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1;
immunoglobulin superfamily, integrin-binding, cell
adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3
b.1.1.4 PDB: 1ij9_A 1vsc_A
Length = 202
Score = 40.9 bits (95), Expect = 4e-06
Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
Query: 7 IKTNPPPKVTLDIGATFVITCETVGVPTPLVSWRLNWNHIPAKCTTTSEDGVGTLTCPDI 66
I+T P + IG + +TC T G +P SWR + P T+E TLT +
Sbjct: 3 IETTPESRYLAQIGDSVSLTCSTTGCESPFFSWRTQIDS-PLNGKVTNEGTTSTLTMNPV 61
Query: 67 Q 67
Sbjct: 62 S 62
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA,
receptor-ligand complex transferase; HET: NAG NDG MAN
BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Length = 347
Score = 41.3 bits (96), Expect = 4e-06
Identities = 10/54 (18%), Positives = 17/54 (31%)
Query: 9 TNPPPKVTLDIGATFVITCETVGVPTPLVSWRLNWNHIPAKCTTTSEDGVGTLT 62
P ++D+G ++ C+ G W L A + LT
Sbjct: 162 KVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVMKSGGLPSLGLT 215
Score = 23.9 bits (51), Expect = 4.6
Identities = 7/34 (20%), Positives = 9/34 (26%)
Query: 9 TNPPPKVTLDIGATFVITCETVGVPTPLVSWRLN 42
T + I G P P + W N
Sbjct: 250 PASVQLHTAVEMHHWCIPFSVDGQPAPSLRWLFN 283
>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo
sapiens} PDB: 3p40_A*
Length = 404
Score = 40.2 bits (94), Expect = 8e-06
Identities = 12/46 (26%), Positives = 14/46 (30%)
Query: 2 TSPAYIKTNPPPKVTLDIGATFVITCETVGVPTPLVSWRLNWNHIP 47
T P I +D +I CE G P P W N
Sbjct: 14 TQPPTITKQSAKDHIVDPRDNILIECEAKGNPAPSFHWTRNSRFFN 59
Score = 37.2 bits (86), Expect = 1e-04
Identities = 10/34 (29%), Positives = 14/34 (41%)
Query: 9 TNPPPKVTLDIGATFVITCETVGVPTPLVSWRLN 42
+ P + L G + C G P P V W +N
Sbjct: 316 LDEPKNLILAPGEDGRLVCRANGNPKPTVQWMVN 349
Score = 32.5 bits (74), Expect = 0.004
Identities = 10/58 (17%), Positives = 19/58 (32%), Gaps = 1/58 (1%)
Query: 10 NPPPKVTLDIGATFVITCETVGVPTPLVSWRLNWNHIPAKCTTTSEDGVGTLTCPDIQ 67
+ G ++ C GVPTP ++W +P+ L ++
Sbjct: 227 GTASSQMVLRGMDLLLECIASGVPTPDIAWYKKGGDLPSDKAKFENFN-KALRITNVS 283
Score = 32.5 bits (74), Expect = 0.004
Identities = 8/40 (20%), Positives = 15/40 (37%), Gaps = 1/40 (2%)
Query: 4 PAYIKTNPPPKVTLDIGATFVITCE-TVGVPTPLVSWRLN 42
V + GA + C G+P+P++ W +
Sbjct: 115 SPLWPKENLDPVVVQEGAPLTLQCNPPPGLPSPVIFWMSS 154
>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion
comple adhesion; HET: NAG; 2.30A {Homo sapiens}
Length = 201
Score = 39.9 bits (93), Expect = 1e-05
Identities = 10/50 (20%), Positives = 18/50 (36%)
Query: 9 TNPPPKVTLDIGATFVITCETVGVPTPLVSWRLNWNHIPAKCTTTSEDGV 58
V +G + C +G P P + WR +P+ ++ V
Sbjct: 117 VVQFKDVYALMGQNVTLECFALGNPVPDIRWRKVLEPMPSTAEISTSGAV 166
>2v44_A NCAM2, neural cell adhesion molecule 2; phosphorylation,
immunoglobulin domain, IG, membrane, homphilic,
glycoprotein, transmembrane; 1.77A {Homo sapiens} PDB:
2xy2_A* 2vaj_A
Length = 189
Score = 38.6 bits (90), Expect = 2e-05
Identities = 13/61 (21%), Positives = 21/61 (34%), Gaps = 2/61 (3%)
Query: 9 TNPPPKVTLDIGATFVITCETVGVPTPLVSWRLNWNHIPA--KCTTTSEDGVGTLTCPDI 66
T KV L +G + TC +G P + + I + + E LT +
Sbjct: 6 TISLSKVELSVGESKFFTCTAIGEPESIDWYNPQGEKIISTQRVVVQKEGVRSRLTIYNA 65
Query: 67 Q 67
Sbjct: 66 N 66
Score = 32.8 bits (75), Expect = 0.002
Identities = 7/39 (17%), Positives = 10/39 (25%)
Query: 9 TNPPPKVTLDIGATFVITCETVGVPTPLVSWRLNWNHIP 47
G + C P P VSW + +
Sbjct: 100 REVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVT 138
>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A
{Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4
b.1.1.4
Length = 395
Score = 38.7 bits (90), Expect = 3e-05
Identities = 11/41 (26%), Positives = 16/41 (39%)
Query: 2 TSPAYIKTNPPPKVTLDIGATFVITCETVGVPTPLVSWRLN 42
S + P + + G I C+ G+P P V W N
Sbjct: 306 VSAPKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSHN 346
Score = 32.6 bits (74), Expect = 0.004
Identities = 7/40 (17%), Positives = 13/40 (32%), Gaps = 1/40 (2%)
Query: 9 TNPPPKVTLDIGATFVITCETVGVPTPL-VSWRLNWNHIP 47
+ P +V V+ C G + SW+ +
Sbjct: 10 KDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYN 49
Score = 32.6 bits (74), Expect = 0.005
Identities = 5/49 (10%), Positives = 11/49 (22%)
Query: 1 MTSPAYIKTNPPPKVTLDIGATFVITCETVGVPTPLVSWRLNWNHIPAK 49
+ + G +I C P ++ N +
Sbjct: 208 GYKGEPVPQYVSKDMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGN 256
Score = 29.1 bits (65), Expect = 0.063
Identities = 10/50 (20%), Positives = 16/50 (32%), Gaps = 1/50 (2%)
Query: 9 TNPPPKVTLDIGATFVITCETV-GVPTPLVSWRLNWNHIPAKCTTTSEDG 57
+ T G F + C P PL++W+ + T D
Sbjct: 104 PAKTHEKTPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDR 153
>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion,
membrane, development protein; HET: NAG; 1.95A
{Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*
Length = 388
Score = 38.4 bits (89), Expect = 3e-05
Identities = 15/41 (36%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Query: 2 TSPAYIKTNPPPKVTLDIGATFVITCETVGVPTPLVSWRLN 42
T+P PP T+D G V TC+ G P VSW +
Sbjct: 305 TAPLSA-KIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKD 344
Score = 35.3 bits (81), Expect = 4e-04
Identities = 7/37 (18%), Positives = 12/37 (32%)
Query: 6 YIKTNPPPKVTLDIGATFVITCETVGVPTPLVSWRLN 42
P ++ I C+ G P P + W +
Sbjct: 5 VFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRS 41
Score = 31.4 bits (71), Expect = 0.009
Identities = 14/65 (21%), Positives = 17/65 (26%), Gaps = 4/65 (6%)
Query: 7 IKTNPPPKVTLDIGATFVITCETVGVPTPLVSWRLNWNHIPAKCTTTSEDGV----GTLT 62
+ L + T + C G P P W K D V GTL
Sbjct: 214 TPALVQKPLELMVAHTISLLCPAQGFPAPSFRWYKFIEGTTRKQAVVLNDRVKQVSGTLI 273
Query: 63 CPDIQ 67
D
Sbjct: 274 IKDAV 278
Score = 29.1 bits (65), Expect = 0.065
Identities = 13/74 (17%), Positives = 18/74 (24%), Gaps = 21/74 (28%)
Query: 11 PPPKVTLDIGATFVITCE---TVGVPTPLVSWRLNWNHIPAKCT---------------- 51
K + G + VI C V +VSW +
Sbjct: 109 DVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSGELHI 168
Query: 52 --TTSEDGVGTLTC 63
EDG + C
Sbjct: 169 REVGPEDGYKSYQC 182
>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus
gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB:
2om5_A
Length = 382
Score = 38.3 bits (89), Expect = 3e-05
Identities = 9/34 (26%), Positives = 13/34 (38%)
Query: 9 TNPPPKVTLDIGATFVITCETVGVPTPLVSWRLN 42
+ DIG+ +C G P P V W +
Sbjct: 298 LDVITDTEADIGSDLRWSCVASGKPRPAVRWLRD 331
Score = 34.4 bits (79), Expect = 0.001
Identities = 10/42 (23%), Positives = 12/42 (28%)
Query: 1 MTSPAYIKTNPPPKVTLDIGATFVITCETVGVPTPLVSWRLN 42
IK P G + C G P P + WR
Sbjct: 203 RQYAPSIKAKFPADTYALTGQMVTLECFAFGNPVPQIKWRKL 244
Score = 32.1 bits (73), Expect = 0.005
Identities = 6/48 (12%), Positives = 13/48 (27%), Gaps = 2/48 (4%)
Query: 2 TSPAYIKTNPPPKVTL--DIGATFVITCETVGVPTPLVSWRLNWNHIP 47
+ + P + +TC P W++N +
Sbjct: 2 SYGPVFEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELK 49
Score = 31.4 bits (71), Expect = 0.009
Identities = 8/40 (20%), Positives = 10/40 (25%), Gaps = 1/40 (2%)
Query: 4 PAYIKTNPPPKVTLDIGATFVITCE-TVGVPTPLVSWRLN 42
V + G + TC P W LN
Sbjct: 100 LQEFSAEERDPVKITEGWGVMFTCSPPPHYPALSYRWLLN 139
>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin
superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus
norvegicus}
Length = 403
Score = 38.3 bits (89), Expect = 4e-05
Identities = 13/59 (22%), Positives = 18/59 (30%)
Query: 9 TNPPPKVTLDIGATFVITCETVGVPTPLVSWRLNWNHIPAKCTTTSEDGVGTLTCPDIQ 67
P V G V+ C G P P +W I + S G L ++
Sbjct: 225 LQRPSNVIAIEGKDAVLECCVSGYPPPSFTWLRGEEVIQLRSKKYSLLGGSNLLISNVT 283
Score = 35.2 bits (81), Expect = 4e-04
Identities = 10/34 (29%), Positives = 18/34 (52%)
Query: 9 TNPPPKVTLDIGATFVITCETVGVPTPLVSWRLN 42
+ +T +G T ++ CE +G P P + W+ N
Sbjct: 125 LSQTESITAFMGDTVLLKCEVIGDPMPTIHWQKN 158
Score = 33.7 bits (77), Expect = 0.002
Identities = 9/34 (26%), Positives = 11/34 (32%)
Query: 9 TNPPPKVTLDIGATFVITCETVGVPTPLVSWRLN 42
N P + C G P P V+W N
Sbjct: 316 LNHPSNLYAYESMDIEFECAVSGKPVPTVNWMKN 349
Score = 29.0 bits (65), Expect = 0.078
Identities = 5/40 (12%), Positives = 13/40 (32%), Gaps = 1/40 (2%)
Query: 9 TNPPPKVTLDIGATFVITCETVGV-PTPLVSWRLNWNHIP 47
+ P G ++ C P++ W+ + +
Sbjct: 25 VSEPSDAVTMRGGNVLLNCSAESDRGVPVIKWKKDGLILA 64
>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain,
vegfr-2, growth factor receptor, VEGF LI
hormone-signaling protein complex, angiogenesis; 3.20A
{Homo sapiens} PDB: 3v6b_R
Length = 772
Score = 38.2 bits (88), Expect = 4e-05
Identities = 13/54 (24%), Positives = 20/54 (37%)
Query: 9 TNPPPKVTLDIGATFVITCETVGVPTPLVSWRLNWNHIPAKCTTTSEDGVGTLT 62
T T IG + ++C G P P + W + + +DG LT
Sbjct: 670 TGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKDGNRNLT 723
Score = 33.6 bits (76), Expect = 0.002
Identities = 5/43 (11%), Positives = 14/43 (32%)
Query: 7 IKTNPPPKVTLDIGATFVITCETVGVPTPLVSWRLNWNHIPAK 49
+ +P + L +G V+ C + + + +
Sbjct: 226 VVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQ 268
Score = 29.7 bits (66), Expect = 0.040
Identities = 8/36 (22%), Positives = 13/36 (36%)
Query: 7 IKTNPPPKVTLDIGATFVITCETVGVPTPLVSWRLN 42
+ V +G I + +G P P + W N
Sbjct: 332 FGSGMESLVEATVGERVRIPAKYLGYPPPEIKWYKN 367
Score = 29.7 bits (66), Expect = 0.047
Identities = 6/45 (13%), Positives = 11/45 (24%), Gaps = 2/45 (4%)
Query: 2 TSPAYIKTNPPPKVTLDIGATFVITCETVGVPTPLVSWRLNWNHI 46
T I P + T + + C ++W
Sbjct: 548 TRGPEITLQPDMQPT--EQESVSLWCTADRSTFENLTWYKLGPQP 590
Score = 28.2 bits (62), Expect = 0.16
Identities = 11/61 (18%), Positives = 20/61 (32%), Gaps = 1/61 (1%)
Query: 8 KTNPPPKVTLDIGATFVITCETVGVPTPL-VSWRLNWNHIPAKCTTTSEDGVGTLTCPDI 66
K+ P + G T +TC +P P + W A + + C +
Sbjct: 426 KSLISPVDSYQYGTTQTLTCTVYAIPPPHHIHWYWQLEEECANEPSQAVSVTNPYPCEEW 485
Query: 67 Q 67
+
Sbjct: 486 R 486
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG
containing, ligand binding protein,membr protein; HET:
NAG MAN; 2.70A {Homo sapiens}
Length = 477
Score = 38.2 bits (89), Expect = 4e-05
Identities = 17/72 (23%), Positives = 24/72 (33%), Gaps = 8/72 (11%)
Query: 1 MTSPAYIKTNPPPKVTLDIGATFVITCETVGVPTPLVSWRLNWNHIPAKCTTTSEDGV-- 58
A I+ +V +D G T C G P P + W H+ + S +
Sbjct: 381 TCRRARIRDRKAQQVFVDEGHTVQFVCRADGDPPPAILWLSPRKHL---VSAKSNGRLTV 437
Query: 59 ---GTLTCPDIQ 67
GTL Q
Sbjct: 438 FPDGTLEVRYAQ 449
>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein;
1.60A {Oryctolagus cuniculus} PDB: 2rjm_A
Length = 284
Score = 37.8 bits (88), Expect = 5e-05
Identities = 12/61 (19%), Positives = 19/61 (31%), Gaps = 2/61 (3%)
Query: 9 TNPPPKVTLDIGATFVITCETVGVPTPLVSWRLNWNHIP--AKCTTTSEDGVGTLTCPDI 66
P V L +G + C G ++W + I T + TLT +
Sbjct: 9 DLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKV 68
Query: 67 Q 67
Sbjct: 69 T 69
Score = 37.4 bits (87), Expect = 7e-05
Identities = 11/67 (16%), Positives = 18/67 (26%), Gaps = 2/67 (2%)
Query: 3 SPAYIKTNPPPKVTLDIGATFVITCETVGVPTPLVSWRLNWNHIPA--KCTTTSEDGVGT 60
P P + C+ G P V W + I K + + V
Sbjct: 97 EPPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAV 156
Query: 61 LTCPDIQ 67
L ++
Sbjct: 157 LEMYNLS 163
Score = 35.9 bits (83), Expect = 2e-04
Identities = 14/61 (22%), Positives = 24/61 (39%), Gaps = 2/61 (3%)
Query: 9 TNPPPKVTLDIGATFVITCETVGVPTPLVSWRLNWNHIPA--KCTTTSEDGVGTLTCPDI 66
P V GA + CE G P VSW + + + K SE+ + ++ ++
Sbjct: 196 RKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNV 255
Query: 67 Q 67
Sbjct: 256 D 256
>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor
protein tyrosine phosphatase; HET: NAG; 2.00A {Mus
musculus} PDB: 3jxa_A*
Length = 384
Score = 37.9 bits (88), Expect = 5e-05
Identities = 6/41 (14%), Positives = 12/41 (29%), Gaps = 1/41 (2%)
Query: 2 TSPAYIKTNPPPKVTLDIGATFVITCETVGVPTPLVSWRLN 42
+ + + + + C+ G P P W N
Sbjct: 293 YAQPNW-VQIINDIHVAMEESVFWECKANGRPKPTYRWLKN 332
Score = 35.2 bits (81), Expect = 5e-04
Identities = 16/65 (24%), Positives = 23/65 (35%), Gaps = 1/65 (1%)
Query: 3 SPAYIKTNPPPKVTLDIGATFVITCETVGVPTPLVSWRLNWNHIPAKCTTTSEDGVGTLT 62
I+ P V + G T + C +G P P + WR + P G L
Sbjct: 203 YEPKIEVQFPETVPAEKGTTVKLECFALGNPVPTILWRRA-DGKPIARKARRHKSNGILE 261
Query: 63 CPDIQ 67
P+ Q
Sbjct: 262 IPNFQ 266
Score = 33.3 bits (76), Expect = 0.002
Identities = 10/47 (21%), Positives = 16/47 (34%), Gaps = 2/47 (4%)
Query: 3 SPAYIKTNPPPKV--TLDIGATFVITCETVGVPTPLVSWRLNWNHIP 47
S P + ++CE G P P + W+LN +
Sbjct: 4 SGPVFVQEPSHVMFPLDSEEKKVKLSCEVKGNPKPHIRWKLNGTDVD 50
Score = 31.3 bits (71), Expect = 0.011
Identities = 8/37 (21%), Positives = 12/37 (32%), Gaps = 1/37 (2%)
Query: 7 IKTNPPPKVTLDIGATFVITCE-TVGVPTPLVSWRLN 42
KT V++ G V+ C +W N
Sbjct: 104 FKTRTRSTVSVRRGQGMVLLCGPPPHSGELSYAWIFN 140
>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A
2f8v_A
Length = 194
Score = 37.8 bits (88), Expect = 5e-05
Identities = 16/58 (27%), Positives = 20/58 (34%), Gaps = 4/58 (6%)
Query: 9 TNPPPKVTLDIGATFVITCETVGVPTPLVSWRLNWNHIPA----KCTTTSEDGVGTLT 62
T P V + G+T G P P VSW + I + DG LT
Sbjct: 9 TQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRAKLT 66
Score = 35.1 bits (81), Expect = 5e-04
Identities = 10/61 (16%), Positives = 23/61 (37%), Gaps = 2/61 (3%)
Query: 9 TNPPPKVTLDIGATFVITCETVGVPTPLVSWRLNWNHIPA--KCTTTSEDGVGTLTCPDI 66
+T+ G+ + G+PTP+V + + I + + E + +L +
Sbjct: 107 VQRLQSMTVRQGSQVRLQVRVTGIPTPVVKFYRDGAEIQSSLDFQISQEGDLYSLLIAEA 166
Query: 67 Q 67
Sbjct: 167 Y 167
>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM;
2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4
PDB: 1ie5_A
Length = 291
Score = 37.9 bits (88), Expect = 6e-05
Identities = 13/68 (19%), Positives = 22/68 (32%), Gaps = 4/68 (5%)
Query: 4 PAYIKTNPPPKVTLDIGATFVITCETVGVPTPLVSWRLNWNHIPA----KCTTTSEDGVG 59
P T ++G + + C+ G P P +SW + I D
Sbjct: 195 PTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSS 254
Query: 60 TLTCPDIQ 67
LT ++
Sbjct: 255 ELTIRNVD 262
Score = 35.2 bits (81), Expect = 4e-04
Identities = 9/40 (22%), Positives = 13/40 (32%)
Query: 9 TNPPPKVTLDIGATFVITCETVGVPTPLVSWRLNWNHIPA 48
N P G VI C+ V P + W+ +
Sbjct: 104 KNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVIL 143
Score = 27.5 bits (61), Expect = 0.27
Identities = 11/63 (17%), Positives = 21/63 (33%), Gaps = 6/63 (9%)
Query: 11 PPPKVTLDIGATFVITCETVGVPT-PLVSW-RLNWNHIPAK----CTTTSEDGVGTLTCP 64
P + + +G + C+ G +SW N + ++D TLT
Sbjct: 8 VPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIY 67
Query: 65 DIQ 67
+
Sbjct: 68 NAN 70
>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 99
Score = 36.5 bits (85), Expect = 6e-05
Identities = 16/54 (29%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
Query: 9 TNPPPKVTLDIGATFVITCETVGVPTPLVSWRLNWNHIPAKCTTTSEDGVGTLT 62
++ + G FV+ C G P P ++W LN I +T E GV L
Sbjct: 15 SSVLKDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPIQ-YARSTCEAGVAELH 67
>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane,
transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo
sapiens}
Length = 291
Score = 37.5 bits (87), Expect = 7e-05
Identities = 15/65 (23%), Positives = 20/65 (30%), Gaps = 1/65 (1%)
Query: 4 PAYIKTNPPPK-VTLDIGATFVITCETVGVPTPLVSWRLNWNHIPAKCTTTSEDGVGTLT 62
P I T + G +C G P P +SW N I + LT
Sbjct: 192 PPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTELT 251
Query: 63 CPDIQ 67
+I
Sbjct: 252 VRNII 256
Score = 35.9 bits (83), Expect = 3e-04
Identities = 7/34 (20%), Positives = 9/34 (26%)
Query: 9 TNPPPKVTLDIGATFVITCETVGVPTPLVSWRLN 42
G + C P P VSW +
Sbjct: 102 REVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYH 135
Score = 34.0 bits (78), Expect = 0.001
Identities = 13/61 (21%), Positives = 20/61 (32%), Gaps = 2/61 (3%)
Query: 9 TNPPPKVTLDIGATFVITCETVGVPTPLVSWRLNWNHIP--AKCTTTSEDGVGTLTCPDI 66
T KV L +G + TC +G P + + I + E LT +
Sbjct: 8 TISLSKVELSVGESKFFTCTAIGEPESIDWYNPQGEKIISTQRVVVQKEGVRSRLTIYNA 67
Query: 67 Q 67
Sbjct: 68 N 68
>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30,
N-terminal eight IG domains...; immunoglobulin domain;
HET: NAG NDG; 4.19A {Drosophila melanogaster}
Length = 816
Score = 37.6 bits (87), Expect = 7e-05
Identities = 15/70 (21%), Positives = 19/70 (27%), Gaps = 4/70 (5%)
Query: 2 TSPAYIKTNPPPKVTLDIGATFVITCETVGVPTPLVSWRLNWNHIPAKCTTTSEDGV--- 58
P + T +T + C G P P+ W K D V
Sbjct: 245 AVPKVVSLAKFDMKTYSGSSTMALLCPAQGYPVPVFRWYKFIEGTTRKQAVVLNDRVKQV 304
Query: 59 -GTLTCPDIQ 67
GTL D
Sbjct: 305 SGTLIIKDAV 314
Score = 36.1 bits (83), Expect = 2e-04
Identities = 15/41 (36%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Query: 2 TSPAYIKTNPPPKVTLDIGATFVITCETVGVPTPLVSWRLN 42
T+P PP T+D G V TC+ G P VSW +
Sbjct: 341 TAPLSA-KIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKD 380
Score = 36.1 bits (83), Expect = 2e-04
Identities = 14/64 (21%), Positives = 22/64 (34%), Gaps = 5/64 (7%)
Query: 9 TNPPPKVTLDIGATFVITCETVGVPTPLVSWRLNWNHIPAKCTTTSEDG-----VGTLTC 63
P G+ + C+ G P P V+W+ P + + GTL
Sbjct: 718 ILEPTDKAFAQGSDAKVECKADGFPKPQVTWKKAVGDTPGEYKDLKKSDNIRVEEGTLHV 777
Query: 64 PDIQ 67
+IQ
Sbjct: 778 DNIQ 781
Score = 36.1 bits (83), Expect = 3e-04
Identities = 15/66 (22%), Positives = 25/66 (37%), Gaps = 7/66 (10%)
Query: 9 TNPPPKVTLDIGATFVITCETVGVPTPLVSWRLNWNHIPA-------KCTTTSEDGVGTL 61
+ T++ G + + C G PTP +SW L+ I + T + D V L
Sbjct: 433 RQAFQEETMEPGPSVFLKCVAGGNPTPEISWELDGKKIANNDRYQVGQYVTVNGDVVSYL 492
Query: 62 TCPDIQ 67
+
Sbjct: 493 NITSVH 498
Score = 35.3 bits (81), Expect = 5e-04
Identities = 12/69 (17%), Positives = 20/69 (28%), Gaps = 4/69 (5%)
Query: 3 SPAYIKTNPPPKVTLDIGATFVITCETVGVPTPL-VSWRLNWNHIPA---KCTTTSEDGV 58
I + +G + C G PL + W L+ I T+
Sbjct: 617 VLPRIIPFAFEEGPAQVGQYLTLHCSVPGGDLPLNIDWTLDGQAISEDLGITTSRVGRRG 676
Query: 59 GTLTCPDIQ 67
LT ++
Sbjct: 677 SVLTIEAVE 685
Score = 34.9 bits (80), Expect = 6e-04
Identities = 10/61 (16%), Positives = 16/61 (26%), Gaps = 1/61 (1%)
Query: 3 SPAYIKTNPPPKVTLDIGATFVITCETVGVPTPLVSW-RLNWNHIPAKCTTTSEDGVGTL 61
P ++ I C+ G P P + W R + + G L
Sbjct: 37 KGPVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKL 96
Query: 62 T 62
Sbjct: 97 V 97
Score = 33.8 bits (77), Expect = 0.002
Identities = 9/37 (24%), Positives = 15/37 (40%)
Query: 11 PPPKVTLDIGATFVITCETVGVPTPLVSWRLNWNHIP 47
K + G T ++TC G P + W + +P
Sbjct: 532 QMEKKAIVAGETLIVTCPVAGYPIDSIVWERDNRALP 568
Score = 28.7 bits (64), Expect = 0.10
Identities = 9/48 (18%), Positives = 13/48 (27%), Gaps = 3/48 (6%)
Query: 11 PPPKVTLDIGATFVITCE---TVGVPTPLVSWRLNWNHIPAKCTTTSE 55
K + G + VI C V +VSW +
Sbjct: 144 DVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDG 191
>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation,
immunoglobulin domain, membrane, glycoprote adhesion,
transmembrane; HET: NAG; 2.00A {Homo sapiens}
Length = 189
Score = 37.1 bits (86), Expect = 8e-05
Identities = 15/64 (23%), Positives = 20/64 (31%)
Query: 4 PAYIKTNPPPKVTLDIGATFVITCETVGVPTPLVSWRLNWNHIPAKCTTTSEDGVGTLTC 63
PA T + G +C G P P +SW N I + LT
Sbjct: 97 PAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTELTV 156
Query: 64 PDIQ 67
+I
Sbjct: 157 RNII 160
Score = 35.5 bits (82), Expect = 3e-04
Identities = 7/40 (17%), Positives = 10/40 (25%)
Query: 9 TNPPPKVTLDIGATFVITCETVGVPTPLVSWRLNWNHIPA 48
G + C P P VSW + +
Sbjct: 6 REVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTT 45
>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 100
Score = 36.2 bits (84), Expect = 8e-05
Identities = 14/59 (23%), Positives = 25/59 (42%)
Query: 9 TNPPPKVTLDIGATFVITCETVGVPTPLVSWRLNWNHIPAKCTTTSEDGVGTLTCPDIQ 67
P TL + T ++ C+ G P P++SW P + + GTL +++
Sbjct: 12 LQGPANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGRDPRATIQEQGTLQIKNLR 70
>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core
protein; immunoglobulin-like domain, extracellular
matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4
Length = 98
Score = 35.6 bits (82), Expect = 1e-04
Identities = 12/67 (17%), Positives = 21/67 (31%), Gaps = 4/67 (5%)
Query: 2 TSPAYIKTNPPPKVTLDIGATFVITCE-TVGVPTPLVSWRLNWNHIPAKCTTTSEDGVGT 60
+ P + ++ GA C P + W N + + D G
Sbjct: 7 SKPIMVTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKL---PSRAMDFNGI 63
Query: 61 LTCPDIQ 67
LT ++Q
Sbjct: 64 LTIRNVQ 70
>3irg_A Titin; IG-like, titin, OBSL1, complex, alternative splicing,
ATP-binding, calcium, calmodulin-binding,
cardiomyopathy; 1.30A {Homo sapiens} PDB: 3knb_A 3q5o_A
2wp3_T* 2wwk_T 2wwm_D 2y9r_T*
Length = 100
Score = 35.4 bits (82), Expect = 2e-04
Identities = 16/63 (25%), Positives = 26/63 (41%), Gaps = 4/63 (6%)
Query: 9 TNPPPKVTLDIGATFVITCETVGVPTPLVSWRLNWNHIPA----KCTTTSEDGVGTLTCP 64
P +++D G + C G PTP V+W I + + + D + TL
Sbjct: 9 EALPSDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTDDLTTLIIM 68
Query: 65 DIQ 67
D+Q
Sbjct: 69 DVQ 71
>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein
1 (isoform 2); hydrolase, immunoglobulin domain,
nucleus, protease; 1.15A {Homo sapiens}
Length = 91
Score = 35.4 bits (82), Expect = 2e-04
Identities = 12/39 (30%), Positives = 15/39 (38%)
Query: 9 TNPPPKVTLDIGATFVITCETVGVPTPLVSWRLNWNHIP 47
P L G+T V+ C VG P P W N +
Sbjct: 7 CVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLT 45
>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted
in U twenty twenty, neurogenesis, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 35.5 bits (82), Expect = 2e-04
Identities = 13/59 (22%), Positives = 24/59 (40%)
Query: 9 TNPPPKVTLDIGATFVITCETVGVPTPLVSWRLNWNHIPAKCTTTSEDGVGTLTCPDIQ 67
P T+ + TFV++C G P P + WR + + + + + G L +
Sbjct: 12 RQGPVNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQDSRIKQLENGVLQIRYAK 70
>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical
bundle cytokine, hematopoietic cytokine-receptor
complex, cell surface, EXTR complex; 7.80A {Homo
sapiens}
Length = 527
Score = 36.6 bits (84), Expect = 2e-04
Identities = 6/60 (10%), Positives = 16/60 (26%), Gaps = 1/60 (1%)
Query: 9 TNPPPKVTLDIGATFVITCETVGVPTPLVSWRLNWNHIPAK-CTTTSEDGVGTLTCPDIQ 67
V +D+ A+ + W + + + GV ++ +
Sbjct: 52 VYEAAAVEVDVSASITLQVLVDAPGNISCLWVFKHSSLNCQPHFDLQNRGVVSMVILKMT 111
Score = 32.0 bits (72), Expect = 0.007
Identities = 7/60 (11%), Positives = 16/60 (26%), Gaps = 3/60 (5%)
Query: 4 PAYIKTNPPPK-VTLDIGATFVITCETVGVPTPLVSWRLNWNHIPAKCTTTSEDGVGTLT 62
+I + +D F + P +W + C D +++
Sbjct: 324 KGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTF--SRKSFPCEQKGLDNGYSIS 381
Score = 30.1 bits (67), Expect = 0.035
Identities = 9/40 (22%), Positives = 16/40 (40%), Gaps = 1/40 (2%)
Query: 9 TNPPPKVTLDIGATFVITCETVGV-PTPLVSWRLNWNHIP 47
P++ L +G I C+ V V ++W L +
Sbjct: 231 QTTLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALE 270
Score = 28.9 bits (64), Expect = 0.076
Identities = 10/55 (18%), Positives = 20/55 (36%), Gaps = 1/55 (1%)
Query: 2 TSPAYIKTNPPPKVTLDIGATFVITCETVGVPTPLVSWRLNWNHIPAKCTTTSED 56
T + P+V + + +C + G P P +W+ + P +E
Sbjct: 405 TKMFTLNIRRKPQVLAE-ASASQASCFSDGYPLPSWTWKKCSDKSPNCTEEITEG 458
Score = 28.5 bits (63), Expect = 0.10
Identities = 8/45 (17%), Positives = 14/45 (31%), Gaps = 2/45 (4%)
Query: 3 SPAYIKTNPPPKVTLDIGATFVITCETVGVPTPLVSWRLNWNHIP 47
+ P + + C + VP P+V W L +
Sbjct: 139 NTLLYTLRRPYFRKM--ENQDALVCISESVPEPIVEWVLCDSQGE 181
>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling
protein,transferase; 2.21A {Rattus norvegicus}
Length = 192
Score = 36.2 bits (84), Expect = 2e-04
Identities = 10/40 (25%), Positives = 12/40 (30%)
Query: 9 TNPPPKVTLDIGATFVITCETVGVPTPLVSWRLNWNHIPA 48
T P V + C P P +SW N I
Sbjct: 11 TTPLETVDALVEEVATFMCAVESYPQPEISWTRNKILIKL 50
Score = 35.1 bits (81), Expect = 4e-04
Identities = 14/34 (41%), Positives = 17/34 (50%)
Query: 9 TNPPPKVTLDIGATFVITCETVGVPTPLVSWRLN 42
T PP V + G V+ C T+G P P VSW
Sbjct: 104 TRPPINVKIIEGLKAVLPCTTMGNPKPSVSWIKG 137
>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2,
angiogenesis, ATP-binding, developmental protein,
differentiation, glycoprotein; 2.70A {Homo sapiens}
Length = 108
Score = 35.4 bits (82), Expect = 2e-04
Identities = 13/54 (24%), Positives = 20/54 (37%)
Query: 9 TNPPPKVTLDIGATFVITCETVGVPTPLVSWRLNWNHIPAKCTTTSEDGVGTLT 62
T T IG + ++C G P P + W + + +DG LT
Sbjct: 14 TGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKDGNRNLT 67
>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET,
muscle protein; NMR {Caenorhabditis elegans} SCOP:
b.1.1.4 PDB: 1wiu_A
Length = 93
Score = 35.0 bits (81), Expect = 2e-04
Identities = 8/61 (13%), Positives = 22/61 (36%), Gaps = 2/61 (3%)
Query: 9 TNPPPKVTLDIGATFVITCETVGVPTPLVSWRLNWNHIPA--KCTTTSEDGVGTLTCPDI 66
K+ + G T + + +G P P +W + + + ++ ++ P
Sbjct: 6 LTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSSTTSIFFPSA 65
Query: 67 Q 67
+
Sbjct: 66 K 66
>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell
adhesion, transmembrane, disulfide bond, alternative
splicing; HET: NAG; 1.95A {Rattus norvegicus}
Length = 190
Score = 36.0 bits (83), Expect = 2e-04
Identities = 12/66 (18%), Positives = 24/66 (36%), Gaps = 7/66 (10%)
Query: 9 TNPPPKVTLDIGATFVITCETVGVPTPLVSWRLNWNHIPA-------KCTTTSEDGVGTL 61
T + G ++ C++VG P P WR N + + +++ L
Sbjct: 96 TGHKRSENKNEGQDAMMYCKSVGYPHPEWMWRKKENGVFEEISNSSGRFFIINKENYTEL 155
Query: 62 TCPDIQ 67
++Q
Sbjct: 156 NIVNLQ 161
Score = 30.6 bits (69), Expect = 0.021
Identities = 6/61 (9%), Positives = 11/61 (18%), Gaps = 5/61 (8%)
Query: 9 TNPPPKVTLDIGATFVITCETVGVPTPLVS--WRLNWNHIPAKCTTTSEDGVGTLTCPDI 66
+ D + C L+ W N + T
Sbjct: 7 VTSEEVIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELT---ATRKNASNMEYRINKP 63
Query: 67 Q 67
+
Sbjct: 64 R 64
>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin
domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr
virus}
Length = 201
Score = 35.8 bits (82), Expect = 2e-04
Identities = 8/40 (20%), Positives = 13/40 (32%)
Query: 9 TNPPPKVTLDIGATFVITCETVGVPTPLVSWRLNWNHIPA 48
+ + + +TC P P V W + PA
Sbjct: 108 SVHSERSQFPDFSVLTVTCTVNAFPHPHVQWLMPEGVEPA 147
>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold,
glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4
b.1.1.4 PDB: 2ncm_A 3ncm_A
Length = 191
Score = 35.6 bits (82), Expect = 3e-04
Identities = 10/41 (24%), Positives = 14/41 (34%)
Query: 9 TNPPPKVTLDIGATFVITCETVGVPTPLVSWRLNWNHIPAK 49
N P G VI C+ V P + W+ + K
Sbjct: 104 KNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILK 144
Score = 28.6 bits (64), Expect = 0.093
Identities = 11/65 (16%), Positives = 21/65 (32%), Gaps = 6/65 (9%)
Query: 9 TNPPPKVTLDIGATFVITCETVGVP-TPLVSW-RLNWNHIPAK----CTTTSEDGVGTLT 62
P + + +G + C+ G +SW N + ++D TLT
Sbjct: 6 DIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLT 65
Query: 63 CPDIQ 67
+
Sbjct: 66 IYNAN 70
>2y25_A Myomesin; structural protein, sarcomere, M-BAND,
immunoglobulin-like D; 3.50A {Homo sapiens}
Length = 317
Score = 35.3 bits (81), Expect = 4e-04
Identities = 15/62 (24%), Positives = 20/62 (32%), Gaps = 3/62 (4%)
Query: 4 PAYIKTNPPPKVTLDIGATFVITCETVGVPTPLVSWRLNWNHIPAK---CTTTSEDGVGT 60
A + P VT+ G +TC G P P VSW N + +
Sbjct: 221 RARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALASDDHCNLKFEAGRTAY 280
Query: 61 LT 62
T
Sbjct: 281 FT 282
Score = 32.2 bits (73), Expect = 0.005
Identities = 7/57 (12%), Positives = 17/57 (29%), Gaps = 1/57 (1%)
Query: 12 PPKVTLDIGATFVITCETVGV-PTPLVSWRLNWNHIPAKCTTTSEDGVGTLTCPDIQ 67
+ ++ C+ + + W + I +DG+ TL +
Sbjct: 13 YLSWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGICTLLITEFS 69
Score = 24.5 bits (53), Expect = 3.5
Identities = 9/62 (14%), Positives = 16/62 (25%), Gaps = 2/62 (3%)
Query: 3 SPAYIKTNPPPKVTLDIGATFVITCETVGVPTPLVSWRLNWNHIPA--KCTTTSEDGVGT 60
+ K+ + + T V V+W N + I + T
Sbjct: 106 CKKIALSATDLKIQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIW 165
Query: 61 LT 62
L
Sbjct: 166 LQ 167
>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain,
immunoglobulin superfamily, transmembrane,
phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A
{Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A
Length = 389
Score = 34.8 bits (80), Expect = 6e-04
Identities = 12/63 (19%), Positives = 18/63 (28%), Gaps = 4/63 (6%)
Query: 9 TNPPPKVTLDIGATFVITCETVGVPTPLVSWRLNWNHIPAK----CTTTSEDGVGTLTCP 64
+ G I+C+ P + WR + +PAK T S L
Sbjct: 104 ISNQTIYYSWEGNPINISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMILEIA 163
Query: 65 DIQ 67
Sbjct: 164 PTS 166
Score = 33.6 bits (77), Expect = 0.002
Identities = 9/66 (13%), Positives = 20/66 (30%), Gaps = 9/66 (13%)
Query: 11 PPPKVTLDIGATFVITCETVGVPTPLVSWRLNWNHIP---------AKCTTTSEDGVGTL 61
T + C+ G P P ++W+ + + + G +L
Sbjct: 6 QLKNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSL 65
Query: 62 TCPDIQ 67
D++
Sbjct: 66 HIKDVK 71
>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1,
isoform 2; hydrolase, immunoglobulin domain, nucleus,
protease; 2.80A {Homo sapiens}
Length = 218
Score = 34.9 bits (80), Expect = 6e-04
Identities = 12/34 (35%), Positives = 14/34 (41%)
Query: 9 TNPPPKVTLDIGATFVITCETVGVPTPLVSWRLN 42
P L G+T V+ C VG P P W N
Sbjct: 122 CVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKN 155
Score = 31.4 bits (71), Expect = 0.009
Identities = 10/45 (22%), Positives = 13/45 (28%)
Query: 9 TNPPPKVTLDIGATFVITCETVGVPTPLVSWRLNWNHIPAKCTTT 53
T P + G + C G P W IP T+
Sbjct: 22 TVNPESKAVLAGQFVKLCCRATGHPFVQYQWFKMNKEIPNGNTSE 66
>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth
factor-receptor complex, receptor tyrosine kinase, CY
4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus
musculus}
Length = 289
Score = 34.9 bits (80), Expect = 7e-04
Identities = 11/65 (16%), Positives = 17/65 (26%), Gaps = 1/65 (1%)
Query: 4 PAYIKTNPPPKVTLDIGATFVITCE-TVGVPTPLVSWRLNWNHIPAKCTTTSEDGVGTLT 62
PA+ +VT+ G V+ C T VS + T
Sbjct: 88 PAHSWNLLAQEVTVVEGQEAVLPCLITDPALKDSVSLMREGGRQVLRKTVYFFSPWRGFI 147
Query: 63 CPDIQ 67
+
Sbjct: 148 IRKAK 152
Score = 31.8 bits (72), Expect = 0.006
Identities = 5/31 (16%), Positives = 6/31 (19%)
Query: 9 TNPPPKVTLDIGATFVITCETVGVPTPLVSW 39
P K+ G I C
Sbjct: 190 KLEPSKLVRIRGEAAQIVCSATNAEVGFNVI 220
>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain,
immunoglobulin fold, alternative splicing, signal,
muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB:
1ncu_A 1tnm_A 1tnn_A
Length = 106
Score = 33.5 bits (77), Expect = 8e-04
Identities = 13/56 (23%), Positives = 22/56 (39%), Gaps = 2/56 (3%)
Query: 9 TNPPPKVTLDIGATFVITCETVGVPTPLVSWRLNWNHIP--AKCTTTSEDGVGTLT 62
P +T+ G + +C+T G P P V+W + A+ T+ T
Sbjct: 18 LTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFE 73
>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI
cardiomyopathy, disease mutation, disulfide bond,
immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}
Length = 197
Score = 34.3 bits (79), Expect = 9e-04
Identities = 14/56 (25%), Positives = 22/56 (39%), Gaps = 2/56 (3%)
Query: 9 TNPPPKVTLDIGATFVITCETVGVPTPLVSWRLNWNHIPA--KCTTTSEDGVGTLT 62
VT +G ++C+ VG P P + W + K +S+ TLT
Sbjct: 11 RKEMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDGRTHTLT 66
Score = 33.5 bits (77), Expect = 0.002
Identities = 10/62 (16%), Positives = 21/62 (33%), Gaps = 2/62 (3%)
Query: 8 KTNPPPKVTLDIGATFVITCETVGVPTPLVSWRLNWNHIPA--KCTTTSEDGVGTLTCPD 65
K +G+T + +G P P ++W + T + + L +
Sbjct: 106 GYPLKEKYYGAVGSTLRLHVMYIGRPVPAMTWFHGQKLLQNSENITIENTEHYTHLVMKN 165
Query: 66 IQ 67
+Q
Sbjct: 166 VQ 167
>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG
B3P; 2.60A {Homo sapiens}
Length = 304
Score = 34.4 bits (79), Expect = 9e-04
Identities = 7/34 (20%), Positives = 13/34 (38%)
Query: 9 TNPPPKVTLDIGATFVITCETVGVPTPLVSWRLN 42
P ++ T + C G P P ++W +
Sbjct: 112 DMGPQLKVVERTRTATMLCAASGNPDPEITWFKD 145
Score = 33.6 bits (77), Expect = 0.002
Identities = 11/34 (32%), Positives = 13/34 (38%)
Query: 9 TNPPPKVTLDIGATFVITCETVGVPTPLVSWRLN 42
+ P + G ITC VG P P V W
Sbjct: 209 SILPMSHEIMPGGNVNITCVAVGSPMPYVKWMQG 242
Score = 31.3 bits (71), Expect = 0.010
Identities = 9/47 (19%), Positives = 14/47 (29%), Gaps = 1/47 (2%)
Query: 3 SPAYIKTNPPPKVTLDIGATFVITCETVGVPTPLVSWRLNWNHIPAK 49
P P G C+ G P P V+W + ++
Sbjct: 5 EPPRF-IKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQ 50
>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB:
2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A
Length = 212
Score = 34.0 bits (78), Expect = 0.001
Identities = 9/64 (14%), Positives = 22/64 (34%), Gaps = 5/64 (7%)
Query: 9 TNPPPKVTLDIGATFVITCETVGVPTPLVSWR-----LNWNHIPAKCTTTSEDGVGTLTC 63
P ++ T + C G P P ++W ++ ++ + + +G L
Sbjct: 112 DMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDTSNNNGRIKQLRSESIGALQI 171
Query: 64 PDIQ 67
+
Sbjct: 172 EQSE 175
Score = 34.0 bits (78), Expect = 0.001
Identities = 9/39 (23%), Positives = 12/39 (30%)
Query: 9 TNPPPKVTLDIGATFVITCETVGVPTPLVSWRLNWNHIP 47
T P T G C+ G P P + W +
Sbjct: 10 TRTPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVS 48
>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR,
VEGF receptor, cancer, immune system-transfer complex;
HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X
Length = 122
Score = 33.6 bits (76), Expect = 0.001
Identities = 7/39 (17%), Positives = 15/39 (38%), Gaps = 2/39 (5%)
Query: 7 IKTNPPPKVTLDIGATFVITCETVGVPTPLVSWRLNWNH 45
+ +P + L +G V+ C + + NW +
Sbjct: 10 VVLSPSHGIELSVGEKLVLNCTARTELNVGIDF--NWEY 46
>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker,
immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A
Length = 642
Score = 34.2 bits (78), Expect = 0.001
Identities = 11/41 (26%), Positives = 17/41 (41%)
Query: 2 TSPAYIKTNPPPKVTLDIGATFVITCETVGVPTPLVSWRLN 42
PP + GA ++C + P+P SWR+N
Sbjct: 556 LYGPDTPIISPPDSSYLSGANLNLSCHSASNPSPQYSWRIN 596
Score = 33.8 bits (77), Expect = 0.002
Identities = 7/39 (17%), Positives = 11/39 (28%)
Query: 4 PAYIKTNPPPKVTLDIGATFVITCETVGVPTPLVSWRLN 42
T P G ++C P SW ++
Sbjct: 380 GPDDPTISPSYTYYRPGVNLSLSCHAASNPPAQYSWLID 418
Score = 31.5 bits (71), Expect = 0.010
Identities = 12/64 (18%), Positives = 19/64 (29%), Gaps = 1/64 (1%)
Query: 4 PAYIKTNPPPKVTLDIGATFVITCETVGVPTPLVSWRLNWNHIPAKCTTTSEDGVGTLTC 63
P ++ +TCE T + W N + + S D TLT
Sbjct: 288 PPKPFITSNNSNPVEDEDAVALTCEPEIQNTTYLWWVNNQSLPVSPRLQLSNDN-RTLTL 346
Query: 64 PDIQ 67
+
Sbjct: 347 LSVT 350
Score = 31.1 bits (70), Expect = 0.012
Identities = 7/37 (18%), Positives = 11/37 (29%)
Query: 11 PPPKVTLDIGATFVITCETVGVPTPLVSWRLNWNHIP 47
P + G ++C P SW +N
Sbjct: 209 SPLNTSYRSGENLNLSCHAASNPPAQYSWFVNGTFQQ 245
Score = 29.9 bits (67), Expect = 0.035
Identities = 9/64 (14%), Positives = 17/64 (26%), Gaps = 1/64 (1%)
Query: 4 PAYIKTNPPPKVTLDIGATFVITCETVGVPTPLVSWRLNWNHIPAKCTTTSEDGVGTLTC 63
+ ++ TCE + W N + + S TLT
Sbjct: 110 LPKPSISSNNSKPVEDKDAVAFTCEPETQDATYLWWVNNQSLPVSPRLQLSNGN-RTLTL 168
Query: 64 PDIQ 67
++
Sbjct: 169 FNVT 172
Score = 29.5 bits (66), Expect = 0.050
Identities = 9/65 (13%), Positives = 17/65 (26%), Gaps = 1/65 (1%)
Query: 3 SPAYIKTNPPPKVTLDIGATFVITCETVGVPTPLVSWRLNWNHIPAKCTTTSEDGVGTLT 62
+ ++ TCE T + W + + S TLT
Sbjct: 465 ELPKPSISSNNSKPVEDKDAVAFTCEPEAQNTTYLWWVNGQSLPVSPRLQLSNGN-RTLT 523
Query: 63 CPDIQ 67
++
Sbjct: 524 LFNVT 528
Score = 23.4 bits (50), Expect = 8.8
Identities = 5/29 (17%), Positives = 8/29 (27%), Gaps = 2/29 (6%)
Query: 11 PPPKVTLDIGATFVITCETVGVPTPLVSW 39
P V G ++ + SW
Sbjct: 7 TPFNVA--EGKEVLLLVHNLPQHLFGYSW 33
>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical
bundle cytokine, CY receptor complex, extracellular
complex; HET: NAG; 4.30A {Homo sapiens}
Length = 423
Score = 34.3 bits (78), Expect = 0.001
Identities = 6/60 (10%), Positives = 16/60 (26%), Gaps = 1/60 (1%)
Query: 9 TNPPPKVTLDIGATFVITCETVGVPTPLVSWRLNWNHIPAK-CTTTSEDGVGTLTCPDIQ 67
V +D+ A+ + W + + + GV ++ +
Sbjct: 52 VYEAAAVEVDVSASITLQVLVDAPGNISCLWVFKHSSLNCQPHFDLQNRGVVSMVILKMT 111
Score = 33.5 bits (76), Expect = 0.002
Identities = 6/56 (10%), Positives = 13/56 (23%), Gaps = 1/56 (1%)
Query: 4 PAYIKTNPPPK-VTLDIGATFVITCETVGVPTPLVSWRLNWNHIPAKCTTTSEDGV 58
+I + +D F + P +W + P +
Sbjct: 324 KGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPCEQKGLDNGYS 379
Score = 33.1 bits (75), Expect = 0.003
Identities = 8/33 (24%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Query: 11 PPPKVTLDIGATFVITCETV-GVPTPLVSWRLN 42
P++ L +G I C+ V ++W L
Sbjct: 233 TLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELE 265
Score = 28.9 bits (64), Expect = 0.076
Identities = 8/45 (17%), Positives = 14/45 (31%), Gaps = 2/45 (4%)
Query: 3 SPAYIKTNPPPKVTLDIGATFVITCETVGVPTPLVSWRLNWNHIP 47
+ P + + C + VP P+V W L +
Sbjct: 139 NTLLYTLRRPYFRKM--ENQDALVCISESVPEPIVEWVLCDSQGE 181
>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral
protein-immune system compl; HET: NAG SUC; 1.99A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B*
2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C*
3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A
3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...
Length = 184
Score = 34.2 bits (78), Expect = 0.001
Identities = 7/35 (20%), Positives = 11/35 (31%)
Query: 6 YIKTNPPPKVTLDIGATFVITCETVGVPTPLVSWR 40
L G + +T E+ +P V R
Sbjct: 98 VFGLTANSDTHLLQGQSLTLTLESPPGSSPSVQCR 132
Score = 29.2 bits (65), Expect = 0.069
Identities = 6/28 (21%), Positives = 10/28 (35%)
Query: 15 VTLDIGATFVITCETVGVPTPLVSWRLN 42
V G T +TC + W+ +
Sbjct: 5 VLGKKGDTVELTCTASQKKSIQFHWKNS 32
>2fbo_J V1V2;, variable region-containing chitin-binding protein 3;
immunoglobulin, VCBP, V-type, V SET, immune system;
1.85A {Branchiostoma floridae}
Length = 250
Score = 34.1 bits (77), Expect = 0.001
Identities = 8/46 (17%), Positives = 13/46 (28%)
Query: 2 TSPAYIKTNPPPKVTLDIGATFVITCETVGVPTPLVSWRLNWNHIP 47
T + + V +D G +TC V+W
Sbjct: 133 TPSNNVHVSTAEVVQVDEGNDITMTCPCTDCANANVTWYTGPTFFE 178
Score = 27.6 bits (60), Expect = 0.22
Identities = 7/37 (18%), Positives = 12/37 (32%), Gaps = 3/37 (8%)
Query: 9 TNPPPKVTLDIGATFVITCE---TVGVPTPLVSWRLN 42
+V + G T + C P++SW
Sbjct: 6 RTTHTEVEVHAGGTVELPCSYQLANDTQPPVISWLKG 42
>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family,
cellular adhesion, ligand-independent DIME mutational
analysis, transferase; HET: EPE; 1.96A {Homo sapiens}
SCOP: b.1.1.1 b.1.1.4
Length = 182
Score = 34.0 bits (78), Expect = 0.001
Identities = 10/69 (14%), Positives = 25/69 (36%), Gaps = 5/69 (7%)
Query: 3 SPAYIKTNPPPKVTLDIGATFVITCETVGVPTPLVSWRLNWNHIPAK----CTTTSEDGV 58
+ + P K+T+ G + C G+ P + W + + + + +
Sbjct: 1 AGLKL-MGAPVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWI 59
Query: 59 GTLTCPDIQ 67
G L+ ++
Sbjct: 60 GFLSLKSVE 68
Score = 32.8 bits (75), Expect = 0.003
Identities = 11/41 (26%), Positives = 18/41 (43%), Gaps = 2/41 (4%)
Query: 3 SPAYIKTNPPPKVTLDIGATFVITCETVGVPTPL-VSWRLN 42
+ T P + + A F ++CE VG P P+ + W
Sbjct: 97 GVPFF-TVEPKDLAVPPNAPFQLSCEAVGPPEPVTIVWWRG 136
>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila
melanogaster} PDB: 3pxj_A
Length = 212
Score = 34.0 bits (78), Expect = 0.001
Identities = 9/40 (22%), Positives = 13/40 (32%)
Query: 9 TNPPPKVTLDIGATFVITCETVGVPTPLVSWRLNWNHIPA 48
P + +G C G P P + WR N +
Sbjct: 10 IRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSG 49
Score = 33.6 bits (77), Expect = 0.002
Identities = 12/34 (35%), Positives = 20/34 (58%)
Query: 9 TNPPPKVTLDIGATFVITCETVGVPTPLVSWRLN 42
T P +++G T ++TC+ +G PTP + W N
Sbjct: 114 TQGPGTRVIEVGHTVLMTCKAIGNPTPNIYWIKN 147
>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix
bundle cytokine, receptor tyrosine kinase glycosylation;
HET: NAG BMA; 3.00A {Homo sapiens}
Length = 292
Score = 33.8 bits (77), Expect = 0.001
Identities = 11/65 (16%), Positives = 17/65 (26%), Gaps = 1/65 (1%)
Query: 4 PAYIKTNPPPKVTLDIGATFVITCE-TVGVPTPLVSWRLNWNHIPAKCTTTSEDGVGTLT 62
PA +V + ++ C T V VS + T S T
Sbjct: 88 PARPWNVLAQEVVVFEDQDALLPCLLTDPVLEAGVSLVRVRGRPLMRHTNYSFSPWHGFT 147
Query: 63 CPDIQ 67
+
Sbjct: 148 IHRAK 152
Score = 31.5 bits (71), Expect = 0.010
Identities = 6/31 (19%), Positives = 9/31 (29%)
Query: 9 TNPPPKVTLDIGATFVITCETVGVPTPLVSW 39
T P ++ G I C V +
Sbjct: 190 TLVPAELVRIRGEAAQIVCSASSVDVNFDVF 220
>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor,
tight junction formation, immunoglobulin superfamily,
immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1
b.1.1.4 PDB: 3eoy_G
Length = 209
Score = 33.8 bits (77), Expect = 0.001
Identities = 7/40 (17%), Positives = 16/40 (40%)
Query: 3 SPAYIKTNPPPKVTLDIGATFVITCETVGVPTPLVSWRLN 42
+ + P+V + ++C G +P V W+ +
Sbjct: 2 MGSVTVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFD 41
Score = 29.5 bits (66), Expect = 0.049
Identities = 11/42 (26%), Positives = 16/42 (38%), Gaps = 1/42 (2%)
Query: 7 IKTNPPPKVTLDIGATFVITC-ETVGVPTPLVSWRLNWNHIP 47
K + IG V+TC E G P +W + +P
Sbjct: 109 SKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMP 150
>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo
sapiens}
Length = 99
Score = 33.0 bits (76), Expect = 0.001
Identities = 9/61 (14%), Positives = 15/61 (24%), Gaps = 2/61 (3%)
Query: 9 TNPPPKVTLDIGATFVITCETVGVPTPLVSWRLNWNHIPA--KCTTTSEDGVGTLTCPDI 66
T+ + + G P P W + I K + + G L
Sbjct: 10 VTGLQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQGGKYKLSEDKGGFFLEIHKT 69
Query: 67 Q 67
Sbjct: 70 D 70
>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet,
STRU genomics, berkeley structural genomics center,
BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A
Length = 137
Score = 33.5 bits (76), Expect = 0.002
Identities = 9/34 (26%), Positives = 13/34 (38%)
Query: 9 TNPPPKVTLDIGATFVITCETVGVPTPLVSWRLN 42
P +G + + CE VG P P + W
Sbjct: 25 VQAPLSQQRWVGGSVELHCEAVGSPVPEIQWWFE 58
>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold,
transmembrane, MHC lipoprotein, polymorphism; 3.90A
{Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3
PDB: 1wip_A 1wiq_A 3t0e_E
Length = 363
Score = 33.6 bits (76), Expect = 0.002
Identities = 7/41 (17%), Positives = 11/41 (26%)
Query: 6 YIKTNPPPKVTLDIGATFVITCETVGVPTPLVSWRLNWNHI 46
L G + +T E+ +P V R
Sbjct: 97 VFGLTANSDTHLLQGQSLTLTLESPPGSSPSVQCRSPRGKN 137
Score = 27.8 bits (61), Expect = 0.19
Identities = 6/28 (21%), Positives = 10/28 (35%)
Query: 15 VTLDIGATFVITCETVGVPTPLVSWRLN 42
V G T +TC + W+ +
Sbjct: 4 VLGKKGDTVELTCTASQKKSIQFHWKNS 31
>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}
Length = 305
Score = 33.6 bits (77), Expect = 0.002
Identities = 10/63 (15%), Positives = 18/63 (28%), Gaps = 4/63 (6%)
Query: 9 TNPPPKVTLDIGATFVITCETVGVPTPLVSWRLNWNHIPAKCT----TTSEDGVGTLTCP 64
+ + + + C+ G P P+V W I A + G L
Sbjct: 8 KEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIA 67
Query: 65 DIQ 67
+
Sbjct: 68 SVT 70
Score = 30.5 bits (69), Expect = 0.024
Identities = 7/32 (21%), Positives = 11/32 (34%)
Query: 11 PPPKVTLDIGATFVITCETVGVPTPLVSWRLN 42
V G I G P P+++W+
Sbjct: 110 GMGAVHALRGEVVSIKIPFSGKPDPVITWQKG 141
>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human
coxsackievirus A21, cryo-electron
microscopy,virus-receptor complex, icosahedral virus;
HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3
b.1.1.4 b.1.1.4 b.1.1.4
Length = 450
Score = 33.7 bits (76), Expect = 0.002
Identities = 13/63 (20%), Positives = 20/63 (31%), Gaps = 4/63 (6%)
Query: 4 PAYIKTNPPPKVTLDIGATFVITCETVGVPTPLVSWRLN---WNHIPAKCTTTSEDGVGT 60
P + + P T + C+ G P P + + I T T + GT
Sbjct: 369 PRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLPIGESVTVTRDLE-GT 427
Query: 61 LTC 63
C
Sbjct: 428 YLC 430
Score = 29.1 bits (64), Expect = 0.066
Identities = 9/34 (26%), Positives = 13/34 (38%)
Query: 12 PPKVTLDIGATFVITCETVGVPTPLVSWRLNWNH 45
P KV L G + ++TC T L+
Sbjct: 6 PSKVILPRGGSVLVTCSTSCDQPMLLGIETPLPK 39
>3irg_B Obscurin-like protein 1; IG-like, titin, OBSL1, complex,
alternative splicing, ATP-binding, calcium,
calmodulin-binding, cardiomyopathy; 1.30A {Homo
sapiens} PDB: 3knb_B 2wp3_O* 2wwm_C 2wwk_O
Length = 107
Score = 32.7 bits (75), Expect = 0.002
Identities = 12/56 (21%), Positives = 21/56 (37%), Gaps = 2/56 (3%)
Query: 9 TNPPPKVTLDIGATFVITCETVGVPTPLVSWRLNWNHIPA--KCTTTSEDGVGTLT 62
P V + GA + C +G P P+V W + A + + ++ L
Sbjct: 17 LRFPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADGAEHGLL 72
>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin,
actin-associated scaffold, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 110
Score = 32.7 bits (75), Expect = 0.002
Identities = 15/62 (24%), Positives = 27/62 (43%), Gaps = 3/62 (4%)
Query: 9 TNPPPKVTLDIGATFVITCETVGVPTPLVSWRLNWNHIPAKCT---TTSEDGVGTLTCPD 65
P +T+ G + C+ G+PTP +SW+L+ + E+GV +L
Sbjct: 13 LQAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVRENGVHSLIIEP 72
Query: 66 IQ 67
+
Sbjct: 73 VT 74
>2v9t_A Roundabout homolog 1; structural protein-receptor complex,
developmental protein, domain, roundabout, chemotaxis,
LRR domain; 1.70A {Homo sapiens}
Length = 117
Score = 32.9 bits (75), Expect = 0.002
Identities = 8/39 (20%), Positives = 14/39 (35%)
Query: 9 TNPPPKVTLDIGATFVITCETVGVPTPLVSWRLNWNHIP 47
P + + G + C+ G PTP + W +
Sbjct: 13 VEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVE 51
>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor
tyrosine kinase, growth factor cytoki dimerization,
transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*
Length = 524
Score = 33.1 bits (75), Expect = 0.003
Identities = 11/52 (21%), Positives = 16/52 (30%)
Query: 11 PPPKVTLDIGATFVITCETVGVPTPLVSWRLNWNHIPAKCTTTSEDGVGTLT 62
P +T D ++ C G P P + W + V TL
Sbjct: 412 KPEILTYDRLVNGMLQCVAAGFPEPTIDWYFCPGTEQRCSASVLPVDVQTLN 463
Score = 30.8 bits (69), Expect = 0.020
Identities = 7/37 (18%), Positives = 14/37 (37%), Gaps = 1/37 (2%)
Query: 7 IKTNPPPKVTLDIGATFVITCETVGVPTPL-VSWRLN 42
+ + L G F +TC V + + +W+
Sbjct: 213 VVSVSKASYLLREGEEFTVTCTIKDVSSSVYSTWKRE 249
Score = 30.0 bits (67), Expect = 0.039
Identities = 12/74 (16%), Positives = 20/74 (27%), Gaps = 10/74 (13%)
Query: 4 PAYIKTNP--PPKVTLDIGATFVITCETVGVPTP-LVSWRLN-------WNHIPAKCTTT 53
+I P V ++ G + E P P W W P +
Sbjct: 310 KGFINIFPMINTTVFVNDGENVDLIVEYEAFPKPEHQQWIYMNRTFTDKWEDYPKSENES 369
Query: 54 SEDGVGTLTCPDIQ 67
+ V L ++
Sbjct: 370 NIRYVSELHLTRLK 383
Score = 26.6 bits (58), Expect = 0.52
Identities = 4/59 (6%), Positives = 11/59 (18%)
Query: 9 TNPPPKVTLDIGATFVITCETVGVPTPLVSWRLNWNHIPAKCTTTSEDGVGTLTCPDIQ 67
+ ++ C S + K D + ++
Sbjct: 118 FLVDRSLYGKEDNDTLVRCPLTDPEVTNYSLKGCQGKPLPKDLRFIPDPKAGIMIKSVK 176
>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin
domain, fibronectin type III repeat, CE adhesion; 1.80A
{Homo sapiens}
Length = 215
Score = 32.9 bits (75), Expect = 0.003
Identities = 12/62 (19%), Positives = 18/62 (29%), Gaps = 4/62 (6%)
Query: 10 NPPPKVTLDIGATFVITCETVGVPTPLVSWRLNWNHIP----AKCTTTSEDGVGTLTCPD 65
P V G ITCE P+ +SW + +P + + L
Sbjct: 23 QGPVAVYTWEGNQVNITCEVFAYPSATISWFRDGQLLPSSNYSNIKIYNTPSASYLEVTP 82
Query: 66 IQ 67
Sbjct: 83 DS 84
>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein,
serine/threonine-protein KI LIMB-girdle muscular
dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB:
2j8o_A 2ill_A
Length = 197
Score = 32.8 bits (75), Expect = 0.003
Identities = 7/34 (20%), Positives = 11/34 (32%)
Query: 9 TNPPPKVTLDIGATFVITCETVGVPTPLVSWRLN 42
V G I G P P+++W+
Sbjct: 108 LEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKG 141
Score = 32.4 bits (74), Expect = 0.004
Identities = 6/34 (17%), Positives = 12/34 (35%)
Query: 9 TNPPPKVTLDIGATFVITCETVGVPTPLVSWRLN 42
+ + + + C+ G P P+V W
Sbjct: 8 KEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQ 41
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein,
neurite growth regulation; HET: NAG BMA; 2.00A {Mus
musculus}
Length = 361
Score = 32.5 bits (74), Expect = 0.004
Identities = 11/60 (18%), Positives = 16/60 (26%), Gaps = 3/60 (5%)
Query: 10 NPPPKVTLDIGATFVITCETVGVPTPLVSWRLNWNHIPAKCTTTSEDGV--GTLTCPDIQ 67
+G T I C+T V + N + V G L +Q
Sbjct: 251 YKESAWEAHLGDTLTIRCDTKQQGMTKVWVSPS-NEQVLSQGSNGSVSVRNGDLFFKKVQ 309
>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling
protein/receptor, growth regulation/complex, vitamin
K-dependent protein; HET: NAG; 3.3A {Homo sapiens}
Length = 195
Score = 32.6 bits (74), Expect = 0.004
Identities = 11/60 (18%), Positives = 21/60 (35%), Gaps = 4/60 (6%)
Query: 9 TNPPPKVTLDIGATFVITCETVGVPTPL-VSWRLNWNHIPAKCTTTSEDGVGTLTCPDIQ 67
P T+ F ++C+ G P P+ + W + + T +L P +
Sbjct: 110 LEEPEDRTVAANTPFNLSCQAQGPPEPVDLLWLQDAVPLA---TAPGHGPQRSLHVPGLN 166
>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance,
cell adhesion, immunoglobulin domain; 3.2A {Drosophila
melanogaster} PDB: 2vra_A*
Length = 217
Score = 32.5 bits (74), Expect = 0.004
Identities = 6/34 (17%), Positives = 12/34 (35%)
Query: 9 TNPPPKVTLDIGATFVITCETVGVPTPLVSWRLN 42
P + + + C+ G P P + W +
Sbjct: 13 IEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKD 46
Score = 30.2 bits (68), Expect = 0.027
Identities = 8/35 (22%), Positives = 14/35 (40%), Gaps = 1/35 (2%)
Query: 9 TNPPPKVTLDIGATFVITCETV-GVPTPLVSWRLN 42
P + G T ++ C G+P P + W +
Sbjct: 112 RVEPKDTRVAKGETALLECGPPKGIPEPTLIWIKD 146
>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND,
structural protein, muscle, antibo; 1.69A {Homo
sapiens}
Length = 97
Score = 31.5 bits (72), Expect = 0.004
Identities = 13/61 (21%), Positives = 18/61 (29%), Gaps = 3/61 (4%)
Query: 9 TNPPPKVTLDIGATFVITCETVGVPTPL-VSWRLNWNHIPA--KCTTTSEDGVGTLTCPD 65
+ + G C+ V+W + K T EDGV L D
Sbjct: 5 SGQIMHAVGEEGGHVKYVCKIENYDQSTQVTWYFGVRQLENSEKYEITYEDGVAILYVKD 64
Query: 66 I 66
I
Sbjct: 65 I 65
>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta
trefoil, IG domain, growth factor/growth factor receptor
complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 334
Score = 32.3 bits (73), Expect = 0.005
Identities = 6/38 (15%), Positives = 12/38 (31%)
Query: 3 SPAYIKTNPPPKVTLDIGATFVITCETVGVPTPLVSWR 40
++ P T +G+ C+ P + W
Sbjct: 220 HRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWL 257
Score = 30.7 bits (69), Expect = 0.018
Identities = 9/31 (29%), Positives = 12/31 (38%)
Query: 12 PPKVTLDIGATFVITCETVGVPTPLVSWRLN 42
+ + T C G PTP +SW N
Sbjct: 130 KKLLAVPAANTVRFRCPAAGNPTPSISWLKN 160
Score = 30.0 bits (67), Expect = 0.034
Identities = 5/44 (11%), Positives = 12/44 (27%), Gaps = 1/44 (2%)
Query: 7 IKTNPPPKVTLDIGATFVITCE-TVGVPTPLVSWRLNWNHIPAK 49
+ ++ G ++C G P W + +
Sbjct: 10 PEPGQQEQLVFGSGDAVELSCPPPGGGPMGPTVWVKDGTGLVPS 53
>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo
sapiens}
Length = 103
Score = 31.5 bits (72), Expect = 0.005
Identities = 13/56 (23%), Positives = 17/56 (30%), Gaps = 2/56 (3%)
Query: 9 TNPPPKVTLDIGATFVITCETVGVPTPLVSWRLNWNHIP--AKCTTTSEDGVGTLT 62
T + G PT V W N + +K T+ GV TL
Sbjct: 12 TLRMRSHRVPCGQNTRFILNVQSKPTAEVKWYHNGVELQESSKIHYTNTSGVLTLE 67
>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif,
immunoglobulin-like domain, growth facto factor
receptor, extracellular; 2.10A {Homo sapiens} PDB:
1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E
1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C
Length = 231
Score = 32.2 bits (73), Expect = 0.005
Identities = 5/38 (13%), Positives = 11/38 (28%)
Query: 3 SPAYIKTNPPPKVTLDIGATFVITCETVGVPTPLVSWR 40
++ P + +G C+ P + W
Sbjct: 116 HRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWI 153
Score = 31.4 bits (71), Expect = 0.010
Identities = 8/54 (14%), Positives = 12/54 (22%), Gaps = 3/54 (5%)
Query: 12 PPKVTLDIGATFVITCETVGVPTPLVSWRLNWNHIPA---KCTTTSEDGVGTLT 62
+ T C G P P + W N + +L
Sbjct: 26 KRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLI 79
>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor
tyrosine kinase, class III, recep ligand complex,
cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A
{Mus musculus}
Length = 290
Score = 32.4 bits (73), Expect = 0.005
Identities = 4/59 (6%), Positives = 13/59 (22%)
Query: 9 TNPPPKVTLDIGATFVITCETVGVPTPLVSWRLNWNHIPAKCTTTSEDGVGTLTCPDIQ 67
+ + ++ C S T + +T +++
Sbjct: 95 FLVGLPLFGKEDSDALVRCPLTDPQVSQYSLIECDGKSLPTDLTFVPNPKAGITIKNVK 153
Score = 27.0 bits (59), Expect = 0.37
Identities = 9/35 (25%), Positives = 12/35 (34%), Gaps = 1/35 (2%)
Query: 9 TNPPPKVTLDIGATFVITCETVGVPTPL-VSWRLN 42
+ P L G TF + C V T + W
Sbjct: 192 SVPETSHLLKKGDTFTVVCTIKDVSTSVNSMWLKM 226
>2ens_A Advanced glycosylation END product-specific receptor;
beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 96
Score = 31.2 bits (71), Expect = 0.006
Identities = 9/34 (26%), Positives = 14/34 (41%)
Query: 9 TNPPPKVTLDIGATFVITCETVGVPTPLVSWRLN 42
P + G T +TCE P+P + W +
Sbjct: 14 VVEPEGGAVAPGGTVTLTCEVPAQPSPQIHWMKD 47
>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural
plasticity, cell-surface dimerizatio adhesion; HET: NAG
FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4
PDB: 1p53_A*
Length = 265
Score = 31.9 bits (72), Expect = 0.006
Identities = 7/46 (15%), Positives = 14/46 (30%)
Query: 1 MTSPAYIKTNPPPKVTLDIGATFVITCETVGVPTPLVSWRLNWNHI 46
+ P + + P T + C+ G P P + +
Sbjct: 181 LYGPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFP 226
>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural
protein, cell membrane, cytoplasm, cytoskeleton,
disease mutation, immunoglobulin domain; NMR {Homo
sapiens}
Length = 100
Score = 31.1 bits (71), Expect = 0.007
Identities = 15/62 (24%), Positives = 26/62 (41%), Gaps = 3/62 (4%)
Query: 9 TNPPPKVTLDIGATFVITCETVGVPTPLVSWRLNWNHI---PAKCTTTSEDGVGTLTCPD 65
P +++D G + + G+P P VSW LN + SE G+ +L
Sbjct: 9 IQVPENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEKGLHSLIFEV 68
Query: 66 IQ 67
++
Sbjct: 69 VR 70
>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein
complex, receptor tyrosine kinas binding, immunoglobulin
domain, kinase, membrane, nucleotid binding; HET: NAG;
2.10A {Homo sapiens}
Length = 241
Score = 31.8 bits (72), Expect = 0.007
Identities = 6/38 (15%), Positives = 12/38 (31%)
Query: 3 SPAYIKTNPPPKVTLDIGATFVITCETVGVPTPLVSWR 40
++ P T +G+ C+ P + W
Sbjct: 112 HRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWL 149
Score = 30.7 bits (69), Expect = 0.016
Identities = 9/31 (29%), Positives = 12/31 (38%)
Query: 12 PPKVTLDIGATFVITCETVGVPTPLVSWRLN 42
+ + T C G PTP +SW N
Sbjct: 22 KKLLAVPAANTVRFRCPAAGNPTPSISWLKN 52
>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane,
glycoprotein, signal, complex (immunoglobulin/receptor);
2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB:
1ira_Y* 4dep_B* 1g0y_R
Length = 315
Score = 32.0 bits (72), Expect = 0.007
Identities = 10/60 (16%), Positives = 21/60 (35%)
Query: 3 SPAYIKTNPPPKVTLDIGATFVITCETVGVPTPLVSWRLNWNHIPAKCTTTSEDGVGTLT 62
+ I + + +D+G+ + C G + + W+ N + I ED
Sbjct: 207 TRPVIVSPANETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVEN 266
Score = 27.8 bits (61), Expect = 0.23
Identities = 7/64 (10%), Positives = 15/64 (23%), Gaps = 7/64 (10%)
Query: 10 NPPPKVTLDIGATFVITCETV------GVPTPLVSWRLNWNHIPAKCTTTSEDGVGTLTC 63
K L + + C + P + W + + S L
Sbjct: 108 QAIFKQKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHFSGVK-DRLIV 166
Query: 64 PDIQ 67
++
Sbjct: 167 MNVA 170
>1f97_A Junction adhesion molecule; immunoglobulin superfamily,
beta-sandwich fold, cell adhesion; 2.50A {Mus musculus}
SCOP: b.1.1.1 b.1.1.4
Length = 212
Score = 31.9 bits (72), Expect = 0.008
Identities = 7/33 (21%), Positives = 12/33 (36%)
Query: 9 TNPPPKVTLDIGATFVITCETVGVPTPLVSWRL 41
V + + +TC G +P V W+
Sbjct: 5 YTAQSDVQVPENESIKLTCTYSGFSSPRVEWKF 37
Score = 28.4 bits (63), Expect = 0.14
Identities = 11/41 (26%), Positives = 16/41 (39%), Gaps = 1/41 (2%)
Query: 8 KTNPPPKVTLDIGATFVITC-ETVGVPTPLVSWRLNWNHIP 47
K ++ IG V+TC E G P SW + +
Sbjct: 107 KPTISVPSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISML 147
>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation,
phosphorylation, disease MU neuronal development,
immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens}
PDB: 2v9q_A
Length = 212
Score = 31.7 bits (72), Expect = 0.008
Identities = 8/39 (20%), Positives = 14/39 (35%)
Query: 9 TNPPPKVTLDIGATFVITCETVGVPTPLVSWRLNWNHIP 47
P + + G + C+ G PTP + W +
Sbjct: 13 VEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVE 51
Score = 28.6 bits (64), Expect = 0.084
Identities = 10/40 (25%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Query: 9 TNPPPKVTLDIGATFVITCE-TVGVPTPLVSWRLNWNHIP 47
P V + +G V+ C+ G P P +SW+ + + +
Sbjct: 115 RQNPSDVMVAVGEPAVMECQPPRGHPEPTISWKKDGSPLD 154
>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain,
beta-sandwhich, I-SET, structural protein; 2.10A {Homo
sapiens} SCOP: b.1.1.4
Length = 99
Score = 31.1 bits (71), Expect = 0.008
Identities = 14/62 (22%), Positives = 17/62 (27%), Gaps = 3/62 (4%)
Query: 9 TNPPPKVTLDIGATFVITCETVGVPTPLVSWRLNWNHI---PAKCTTTSEDGVGTLTCPD 65
T+ G+ VG P P W N I ED V L D
Sbjct: 9 FERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCELVIRD 68
Query: 66 IQ 67
+
Sbjct: 69 VT 70
>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33;
2.40A {Caenorhabditis elegans} PDB: 1koa_A
Length = 573
Score = 31.7 bits (72), Expect = 0.008
Identities = 9/62 (14%), Positives = 18/62 (29%), Gaps = 2/62 (3%)
Query: 8 KTNPPPKVTLDIGATFVITCETVGVPTPLVSWRLNWNHIP--AKCTTTSEDGVGTLTCPD 65
P + G + C + P+V+W + + K LT
Sbjct: 485 FIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLTINR 544
Query: 66 IQ 67
++
Sbjct: 545 VK 546
>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural
genomics, IG-fold I-SET, RGD motif, homophilic
adhesion, arterial smooth muscle cells; 0.96A {Homo
sapiens}
Length = 99
Score = 30.7 bits (70), Expect = 0.009
Identities = 11/62 (17%), Positives = 22/62 (35%), Gaps = 3/62 (4%)
Query: 9 TNPPPKVTLDIGATFVITCETVGVPTPLVSWRLNWNHI---PAKCTTTSEDGVGTLTCPD 65
++ G +++ G P P+VSW N + + +E G+ L
Sbjct: 9 KVSLMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEAEGGLCRLRILA 68
Query: 66 IQ 67
+
Sbjct: 69 AE 70
>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C,
C-protein, skeletal muscle fast-isoform, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 30.8 bits (70), Expect = 0.010
Identities = 7/54 (12%), Positives = 13/54 (24%), Gaps = 1/54 (1%)
Query: 15 VTLDIGATFVITCETVGVPTPLVSWRLNWNHI-PAKCTTTSEDGVGTLTCPDIQ 67
+G + G P P V W + ++ + D
Sbjct: 34 YIRKVGEQLNLVVPFQGKPRPQVVWTKGGAPLDTSRVHVRTSDFDTVFFVRQAA 87
>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed
death-1 ligand 1, complex, costimulatory, immune system;
2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A
Length = 222
Score = 30.7 bits (69), Expect = 0.016
Identities = 15/59 (25%), Positives = 22/59 (37%), Gaps = 1/59 (1%)
Query: 4 PAYIKTNPPPKVTLDIGATFVITCETVGVPTPLVSWRLN-WNHIPAKCTTTSEDGVGTL 61
Y K N V + + +TC+ G P V W + + K TTT+ L
Sbjct: 115 APYNKINQRILVVDPVTSEHELTCQAEGYPKAEVIWTSSDHQVLSGKTTTTNSKREEKL 173
>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A
{Homo sapiens}
Length = 207
Score = 30.7 bits (69), Expect = 0.017
Identities = 7/57 (12%), Positives = 17/57 (29%), Gaps = 1/57 (1%)
Query: 12 PPKVTLDIGATFVITCETVGVPTPL-VSWRLNWNHIPAKCTTTSEDGVGTLTCPDIQ 67
+ ++ C+ + + W + I +DG+ TL +
Sbjct: 123 YLSWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGICTLLITEFS 179
Score = 23.4 bits (50), Expect = 7.6
Identities = 4/35 (11%), Positives = 8/35 (22%), Gaps = 1/35 (2%)
Query: 9 TNPPPKVTLDIGATFVITCETV-GVPTPLVSWRLN 42
T V + + V++ N
Sbjct: 6 TKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFN 40
>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer,
immunoglobul domain, muscle protein, thick filament,
contractIle protein; 2.24A {Homo sapiens}
Length = 212
Score = 30.6 bits (69), Expect = 0.019
Identities = 14/40 (35%), Positives = 18/40 (45%)
Query: 3 SPAYIKTNPPPKVTLDIGATFVITCETVGVPTPLVSWRLN 42
+ A + P VT+ G +TC G P P VSW N
Sbjct: 115 NRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKN 154
>2kkq_A Myotilin; unknown function, actin-binding, cell membrane,
cytoplasm, cytoskeleton, disease mutation,
immunoglobulin domain; NMR {Homo sapiens}
Length = 116
Score = 29.7 bits (67), Expect = 0.029
Identities = 10/58 (17%), Positives = 18/58 (31%), Gaps = 4/58 (6%)
Query: 9 TNPPPKVTLDIGATFVITCETVGVPTPLVSWRLNWNHIPA----KCTTTSEDGVGTLT 62
P + G + + C+ +P P + W+ N + G TL
Sbjct: 19 IYKPQSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRISLYQDNTGRVTLL 76
>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein
complex, growth factor-receptor complex, TRA hormone
complex; HET: NDG NAG; 2.30A {Homo sapiens}
Length = 289
Score = 30.1 bits (67), Expect = 0.030
Identities = 4/41 (9%), Positives = 10/41 (24%)
Query: 2 TSPAYIKTNPPPKVTLDIGATFVITCETVGVPTPLVSWRLN 42
+ + + + G + C +G W
Sbjct: 178 QVSSINVSVNAVQTVVRQGENITLMCIVIGNEVVNFEWTYP 218
Score = 27.4 bits (60), Expect = 0.26
Identities = 8/67 (11%), Positives = 14/67 (20%), Gaps = 7/67 (10%)
Query: 3 SPAYIKTNPPPKVTLDIGATFVITCETVGVPTPLVSWRLNWNHIPAKCTTTSEDGV---- 58
+ L I C V P +V+ + + G
Sbjct: 93 VGFLPNDAEELFIFLTEITEITIPCR-VTDPQLVVTLHEKKGDVALPVPYDHQRGFSGIF 151
Query: 59 --GTLTC 63
+ C
Sbjct: 152 EDRSYIC 158
>1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein,
immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG;
2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB:
1p9m_C 2arw_A
Length = 325
Score = 30.2 bits (67), Expect = 0.030
Identities = 11/58 (18%), Positives = 18/58 (31%), Gaps = 2/58 (3%)
Query: 11 PPPKVTLDIGATFVITCETV-GVPTPLVSWRLNWNHIPAKCTTTSEDGVGTLTCPDIQ 67
+T G + +TC V V W L + + + G L +Q
Sbjct: 12 ARGVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHPSRWAGMG-RRLLLRSVQ 68
>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell
adhesion molecule, immunoglobuline superfamily,
alternative splicing, cell adhesion; 2.19A {Mus
musculus} PDB: 3mj7_B* 2npl_X
Length = 214
Score = 30.0 bits (67), Expect = 0.035
Identities = 9/61 (14%), Positives = 18/61 (29%), Gaps = 1/61 (1%)
Query: 8 KTNPPPKVTLDIGATFVITCETV-GVPTPLVSWRLNWNHIPAKCTTTSEDGVGTLTCPDI 66
T + +IG F + CE G W+ + +E ++ +
Sbjct: 124 GTRCFVDGSEEIGNDFKLKCEPKEGSLPLQFEWQKLSDSQTMPTPWLAEMTSPVISVKNA 183
Query: 67 Q 67
Sbjct: 184 S 184
Score = 23.5 bits (50), Expect = 7.4
Identities = 8/50 (16%), Positives = 16/50 (32%)
Query: 9 TNPPPKVTLDIGATFVITCETVGVPTPLVSWRLNWNHIPAKCTTTSEDGV 58
T P ++ G T + C+ P + W P+ + +
Sbjct: 4 TTPEQRIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVII 53
>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 115
Score = 29.3 bits (66), Expect = 0.041
Identities = 6/32 (18%), Positives = 10/32 (31%)
Query: 11 PPPKVTLDIGATFVITCETVGVPTPLVSWRLN 42
V + G++ C V W L+
Sbjct: 19 DLEDVDVQEGSSATFRCRISPANYEPVHWFLD 50
>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle
isozymes; IG fold, structural genomics, NPPSFA; NMR
{Homo sapiens} SCOP: b.1.1.4
Length = 114
Score = 29.2 bits (66), Expect = 0.042
Identities = 7/56 (12%), Positives = 14/56 (25%), Gaps = 2/56 (3%)
Query: 9 TNPPPKVTLDIGATFVITCETVGVPTPLVSWRLNWNHIPA--KCTTTSEDGVGTLT 62
P + G + + + G +W I + + LT
Sbjct: 11 IQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGSKLT 66
>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily,
immune system; HET: NAG; 3.00A {Homo sapiens} SCOP:
b.1.1.1 b.1.1.3 PDB: 1i8l_A*
Length = 201
Score = 29.6 bits (66), Expect = 0.042
Identities = 15/50 (30%), Positives = 19/50 (38%), Gaps = 1/50 (2%)
Query: 13 PKVTLDIGATFVITCETVGV-PTPLVSWRLNWNHIPAKCTTTSEDGVGTL 61
+ I C T G P P +SW N + A TT S+D L
Sbjct: 114 SDFEIPTSNIRRIICSTSGGFPEPHLSWLENGEELNAINTTVSQDPETEL 163
>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling
protein complex, angiogenesis, glycoprotein, HOST-virus
interaction, membrane; HET: NAG BMA; 2.70A {Homo
sapiens} PDB: 2x1x_R*
Length = 213
Score = 29.8 bits (66), Expect = 0.042
Identities = 6/44 (13%), Positives = 14/44 (31%), Gaps = 2/44 (4%)
Query: 2 TSPAYIKTNPPPKVTLDIGATFVITCETVGVPTPLVSWRLNWNH 45
+ +P + L +G V+ C + + W +
Sbjct: 102 YRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFN--WEY 143
>1gxe_A Myosin binding protein C, cardiac-type; cytoskeleton, muscle,
IGI, thick filament, immunoglobulin domain; NMR {Homo
sapiens} SCOP: b.1.1.4
Length = 139
Score = 29.3 bits (65), Expect = 0.045
Identities = 8/51 (15%), Positives = 13/51 (25%)
Query: 9 TNPPPKVTLDIGATFVITCETVGVPTPLVSWRLNWNHIPAKCTTTSEDGVG 59
P + + G + G P P V W+ + D
Sbjct: 22 GRIPDTIVVVAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDAPE 72
>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily.,
cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A
Length = 231
Score = 29.8 bits (66), Expect = 0.045
Identities = 11/61 (18%), Positives = 21/61 (34%), Gaps = 1/61 (1%)
Query: 3 SPAYIKTNPPPKVTLDIGATFVITCETV-GVPTPLVSWRLNWNHIPAKCTTTSEDGVGTL 61
+ N ++ A + TC + G P P ++W N + E + +
Sbjct: 117 EATEVSPNKGTLSVMEDSAQEIATCNSRNGNPAPKITWYRNGQRLEVPVEMNPEGYMTSR 176
Query: 62 T 62
T
Sbjct: 177 T 177
>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 110
Score = 28.9 bits (65), Expect = 0.048
Identities = 12/58 (20%), Positives = 16/58 (27%), Gaps = 4/58 (6%)
Query: 9 TNPPPKVTLDIGATFVITCETVGVPTPLVSWRLNWNHIPAKC----TTTSEDGVGTLT 62
+ G TC G P P + W + I K DG +L
Sbjct: 12 EMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGTCSLH 69
>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain,
cytokine decoy RE virus/viral protein, type-1
interferon, soluble A/B-IFNR; HET: EPE; 2.10A
{Ectromelia virus}
Length = 329
Score = 29.4 bits (65), Expect = 0.051
Identities = 10/39 (25%), Positives = 16/39 (41%)
Query: 7 IKTNPPPKVTLDIGATFVITCETVGVPTPLVSWRLNWNH 45
K PK+ + IG ITC V + ++W +
Sbjct: 230 FKLILDPKINVTIGEPANITCTAVSTSLLVDDVLIDWEN 268
>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural
genomics, PSI-biology, NEW YORK struc genomics research
consortium, nysgrc; 2.30A {Homo sapiens}
Length = 124
Score = 28.8 bits (64), Expect = 0.068
Identities = 8/31 (25%), Positives = 13/31 (41%)
Query: 9 TNPPPKVTLDIGATFVITCETVGVPTPLVSW 39
TN +T++ G T + C T + W
Sbjct: 5 TNHTETITVEEGQTLTLKCVTSLRKNSSLQW 35
>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A*
1qa9_A
Length = 182
Score = 28.7 bits (64), Expect = 0.100
Identities = 8/57 (14%), Positives = 17/57 (29%), Gaps = 5/57 (8%)
Query: 11 PPPKVTLDIGATFVITCETVGVPTPLVSWRLNWNHIPAKCTTTSEDGV----GTLTC 63
PK++ +TCE + P ++ + H+ + C
Sbjct: 107 SKPKISWT-CINTTLTCEVMNGTDPELNLYQDGKHLKLSQRVITHKWTTSLSAKFKC 162
>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex,
beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo
sapiens}
Length = 339
Score = 28.5 bits (63), Expect = 0.12
Identities = 7/37 (18%), Positives = 14/37 (37%), Gaps = 3/37 (8%)
Query: 9 TNPPPKVTLDIGATFVITCE---TVGVPTPLVSWRLN 42
+P ++ +G+ I C+ G P + W
Sbjct: 230 ISPLKTISASLGSRLTIPCKVFLGTGTPLTTMLWWTA 266
Score = 28.5 bits (63), Expect = 0.12
Identities = 8/70 (11%), Positives = 16/70 (22%), Gaps = 6/70 (8%)
Query: 4 PAYIKTNPPPKVTLDIGATFVITCETV-----GVPTPLVSWRLNWNHI-PAKCTTTSEDG 57
L + + V+ C + + W + + S G
Sbjct: 119 TDAFLPFISYPQILTLSTSGVLVCPDLSEFTRDKTDVKIQWYKDSLLLDKDNEKFLSVRG 178
Query: 58 VGTLTCPDIQ 67
L D+
Sbjct: 179 TTHLLVHDVA 188
>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein;
2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A
Length = 154
Score = 28.3 bits (63), Expect = 0.12
Identities = 13/57 (22%), Positives = 21/57 (36%), Gaps = 3/57 (5%)
Query: 9 TNPPPKVTLDIGATFVITCETVGVPTPLVSWRLNWNHI---PAKCTTTSEDGVGTLT 62
T + + G+ C+ G P P V W + N + E+G +LT
Sbjct: 45 TKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLT 101
>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like
protein 3, nephrin- like 2, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1
Length = 122
Score = 27.9 bits (62), Expect = 0.14
Identities = 9/46 (19%), Positives = 13/46 (28%), Gaps = 3/46 (6%)
Query: 4 PAYIKTNPPPKVTLDIGATFVITCETVGVPTPL-VSWRLNWNHIPA 48
P I G I C P P ++W N + +
Sbjct: 14 PPIIS--STQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLES 57
>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus,
picornavirus, virus/receptor complex; 15.00A {Homo
sapiens} SCOP: i.6.1.1 PDB: 1dgi_R
Length = 302
Score = 27.8 bits (61), Expect = 0.20
Identities = 12/55 (21%), Positives = 19/55 (34%), Gaps = 2/55 (3%)
Query: 9 TNPPPKVTLDIGATFVITCETV-GVPTPLVSWRLNWNHIPAKCTTTSEDGVGTLT 62
T KV L + C + G P ++W + +P GT+T
Sbjct: 121 TAEVQKVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPNTSQVPGFLS-GTVT 174
Score = 27.4 bits (60), Expect = 0.33
Identities = 6/40 (15%), Positives = 11/40 (27%), Gaps = 1/40 (2%)
Query: 4 PAYIKTNPPPKVTLDIGATFVITCETVGVPTPL-VSWRLN 42
P + + +TC+ P P +W
Sbjct: 216 PPEVSISGYDNNWYLGQNEATLTCDARSNPEPTGYNWSTT 255
>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell
adhesion protein, immunoglobulin fold, I-SET fold, cell
adhesion glycoprotein; 1.9A {Homo sapiens} SCOP:
b.1.1.4 b.1.1.4 PDB: 1bqs_A*
Length = 210
Score = 27.9 bits (61), Expect = 0.20
Identities = 10/31 (32%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
Query: 11 PPPKVTLDIGATFVITCETVGV-PTPLVSWR 40
P P V + +GA+ +TC V WR
Sbjct: 13 PEPVVAVALGASRQLTCRLACADRGASVQWR 43
>3l5h_A Interleukin-6 receptor subunit beta; IG-like, FNIII, cell
membrane, disulfide bond, glycoprotein, immunoglobulin
domain, membrane, phosphoprotein; HET: NAG NDG BMA FUC;
3.60A {Homo sapiens}
Length = 589
Score = 27.7 bits (61), Expect = 0.22
Identities = 12/64 (18%), Positives = 21/64 (32%), Gaps = 7/64 (10%)
Query: 11 PPPKVTLDIGATFVITC-------ETVGVPTPLVSWRLNWNHIPAKCTTTSEDGVGTLTC 63
P + + + F C + V + W+ N IP + T ++T
Sbjct: 9 SPESPVVQLHSNFTAVCVLKEKCMDYFHVNANYIVWKTNHFTIPKEQYTIINRTASSVTF 68
Query: 64 PDIQ 67
DI
Sbjct: 69 TDIA 72
>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK
receptor, receptor tyrosine kinase, 3D-domain swapping,
transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB:
1hcf_X
Length = 103
Score = 27.0 bits (60), Expect = 0.25
Identities = 8/35 (22%), Positives = 11/35 (31%), Gaps = 4/35 (11%)
Query: 12 PPKVTL----DIGATFVITCETVGVPTPLVSWRLN 42
P +T + I G P P + W N
Sbjct: 4 APTITFLESPTSDHHWCIPFTVKGNPKPALQWFYN 38
>3bn3_B ICAM-5, intercellular adhesion molecule 5, telencephalin; I
domain, integrin, allosteric mobility, cell adhesi
immune system; HET: NAG; 2.10A {Homo sapiens}
Length = 196
Score = 27.3 bits (60), Expect = 0.26
Identities = 4/36 (11%), Positives = 9/36 (25%)
Query: 12 PPKVTLDIGATFVITCETVGVPTPLVSWRLNWNHIP 47
P ++ G + + C T +
Sbjct: 9 PRVAFVERGGSLWLNCSTNCPRPERGGLETSLRRNG 44
>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding,
disease MU ectodermal dysplasia, glycoprotein,
heparin-binding, immuno domain, kinase; 1.96A {Homo
sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A
Length = 100
Score = 27.0 bits (60), Expect = 0.28
Identities = 8/54 (14%), Positives = 12/54 (22%), Gaps = 3/54 (5%)
Query: 12 PPKVTLDIGATFVITCETVGVPTPLVSWRLNWNHIPA---KCTTTSEDGVGTLT 62
+ T C G P P + W N + +L
Sbjct: 15 KRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLI 68
>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein
3; structural genomics, joint center for struct
genomics, JCSG; HET: MLY MSE; 1.70A {Mus musculus}
Length = 112
Score = 27.0 bits (59), Expect = 0.34
Identities = 6/41 (14%), Positives = 12/41 (29%), Gaps = 2/41 (4%)
Query: 9 TNPPPKVTLDIGATFVITCETVGVPTPLVS--WRLNWNHIP 47
T P + G+ TC ++ W + +
Sbjct: 14 TVQPETQSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQ 54
>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system;
HET: NAG MAN FUC P33; 2.65A {Homo sapiens}
Length = 262
Score = 26.8 bits (59), Expect = 0.44
Identities = 10/38 (26%), Positives = 15/38 (39%), Gaps = 1/38 (2%)
Query: 11 PPPKVTLDIGATFVITCETVGVPTPL-VSWRLNWNHIP 47
PP V++ T + CE + +P W LN
Sbjct: 7 QPPWVSVFQEETVTLHCEVLHLPGSSSTQWFLNGTATQ 44
>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-
like; 2.50A {Homo sapiens}
Length = 312
Score = 26.9 bits (59), Expect = 0.44
Identities = 7/58 (12%), Positives = 17/58 (29%), Gaps = 1/58 (1%)
Query: 11 PPPKVTLDIGATFVITCETVGVPTPL-VSWRLNWNHIPAKCTTTSEDGVGTLTCPDIQ 67
+ ++ C+ + + W + I +DG+ TL +
Sbjct: 227 EYLSWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGICTLLITEFS 284
Score = 25.3 bits (55), Expect = 1.5
Identities = 9/68 (13%), Positives = 16/68 (23%), Gaps = 4/68 (5%)
Query: 4 PAYIKTNPPPKVTLDIGATFVITCETVGVPTPLVSWRLNWNHIPA----KCTTTSEDGVG 59
P + L+ G V++ N I K G+
Sbjct: 107 PTVPVKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGII 166
Query: 60 TLTCPDIQ 67
+ +Q
Sbjct: 167 EMFMEKLQ 174
>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond,
glycoprotein, immunoglobulin membrane, transmembrane;
HET: NAG; 2.21A {Mus musculus}
Length = 108
Score = 26.4 bits (58), Expect = 0.55
Identities = 7/32 (21%), Positives = 11/32 (34%)
Query: 15 VTLDIGATFVITCETVGVPTPLVSWRLNWNHI 46
VT+ G T ++TC + W
Sbjct: 16 VTVVEGGTAILTCRVDQNDNTSLQWSNPAQQT 47
>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody,
immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S
3cm9_S 3chn_J 3cm9_J
Length = 585
Score = 26.5 bits (57), Expect = 0.57
Identities = 5/47 (10%), Positives = 12/47 (25%)
Query: 1 MTSPAYIKTNPPPKVTLDIGATFVITCETVGVPTPLVSWRLNWNHIP 47
+ P V G++ + C + + + W
Sbjct: 327 FVNEESTIPRSPTVVKGVAGSSVAVLCPYNRKESKSIKYWCLWEGAQ 373
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 26.6 bits (58), Expect = 0.60
Identities = 9/38 (23%), Positives = 17/38 (44%), Gaps = 9/38 (23%)
Query: 3 SPAYIKTNPPPKVTLD-IGAT----FVITCETVGVPTP 35
Y+ + P ++ IG +V+T + +G TP
Sbjct: 227 DKDYLLSIP---ISCPLIGVIQLAHYVVTAKLLGF-TP 260
Score = 25.8 bits (56), Expect = 1.1
Identities = 11/36 (30%), Positives = 16/36 (44%), Gaps = 10/36 (27%)
Query: 5 AYIKTNPPPKVTLDIGATFVITCETV--GVPTPLVS 38
AY T+ PP + D GVP+P++S
Sbjct: 313 AYPNTSLPPSILED--------SLENNEGVPSPMLS 340
>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor,
receptor tyrosine kinase, 3D-domain swapping,
transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4
Length = 118
Score = 25.9 bits (57), Expect = 0.65
Identities = 9/35 (25%), Positives = 13/35 (37%), Gaps = 4/35 (11%)
Query: 12 PPKVTL----DIGATFVITCETVGVPTPLVSWRLN 42
PP+V ++ I G P P + W N
Sbjct: 8 PPRVVSLEEPELRLEHCIEFVVRGNPPPTLHWLHN 42
>1iam_A ICAM-1, CD54, intercellular adhesion molecule-1; rhinovirus
receptor, cell adhesion, integrin ligand, glycopr LFA-1
ligand, immunoglobulin fold; HET: NAG; 2.10A {Homo
sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ic1_A* 1d3l_A
1d3e_I 1d3i_I 3tcx_A
Length = 185
Score = 25.8 bits (56), Expect = 0.95
Identities = 9/34 (26%), Positives = 13/34 (38%)
Query: 12 PPKVTLDIGATFVITCETVGVPTPLVSWRLNWNH 45
P KV L G + ++TC T L+
Sbjct: 6 PSKVILPRGGSVLVTCSTSCDQPKLLGIETPLPK 39
>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus}
SCOP: b.1.1.1 b.1.1.3
Length = 176
Score = 25.7 bits (56), Expect = 0.96
Identities = 5/37 (13%), Positives = 12/37 (32%), Gaps = 1/37 (2%)
Query: 11 PPPKVTLDIGATFVITCETVGVPTPLVSWRLNWNHIP 47
P + + + +TCE + + H+
Sbjct: 102 SKPMIYWE-CSNATLTCEVLEGTDVELKLYQGKEHLR 137
>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG
superfamily, rossmann fold, metal mediated protein
interf immune system; HET: NAG; 3.30A {Homo sapiens}
SCOP: b.1.1.3 b.1.1.4
Length = 291
Score = 25.6 bits (55), Expect = 1.1
Identities = 9/34 (26%), Positives = 13/34 (38%)
Query: 12 PPKVTLDIGATFVITCETVGVPTPLVSWRLNWNH 45
P KV L G + ++TC T L+
Sbjct: 6 PSKVILPRGGSVLVTCSTSCDQPKLLGIETPLPK 39
>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.1.4
Length = 126
Score = 25.3 bits (55), Expect = 1.2
Identities = 6/41 (14%), Positives = 11/41 (26%), Gaps = 3/41 (7%)
Query: 2 TSPAYIKTNPPPKVTLDIGATFVITCETVGVP---TPLVSW 39
S + P T+ +G + P + W
Sbjct: 4 GSSGILFIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKW 44
>3qtg_A Pyruvate kinase, PK; TIM barrel, glycolysis, transferase; 2.20A
{Pyrobaculum aerophilum}
Length = 461
Score = 25.6 bits (57), Expect = 1.2
Identities = 1/18 (5%), Positives = 3/18 (16%)
Query: 14 KVTLDIGATFVITCETVG 31
+ + G
Sbjct: 93 PINVQEGEVVKFKLSDKS 110
>3cx2_A Myosin-binding protein C, cardiac-type; protonation states,
actin-binding, cardiomyopathy, cell adhesion, disease
mutation, immunoglobulin domain; 1.30A {Homo sapiens}
PDB: 2v6h_A 2avg_A
Length = 108
Score = 25.3 bits (55), Expect = 1.3
Identities = 9/50 (18%), Positives = 18/50 (36%), Gaps = 4/50 (8%)
Query: 4 PAYIKTNPPPKVTLDIGATFVITCETVGVP---TPLVSW-RLNWNHIPAK 49
P + P + +G + + G P+V W + W + +K
Sbjct: 3 PIGLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSK 52
>3eow_R Poliovirus receptor; immunoglobulin super family, alternative
splicing, cell adhesion, cell membrane, glycoprotein,
HOST-virus interaction; 3.50A {Homo sapiens} PDB: 3uro_R
3epc_R* 3epd_R* 3epf_R*
Length = 221
Score = 25.4 bits (55), Expect = 1.3
Identities = 12/56 (21%), Positives = 19/56 (33%), Gaps = 2/56 (3%)
Query: 8 KTNPPPKVTLDIGATFVITCETVGV-PTPLVSWRLNWNHIPAKCTTTSEDGVGTLT 62
T KV L + C + G P ++W + +P GT+T
Sbjct: 119 NTAEVQKVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPQTSQVPGFLS-GTVT 173
>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} PDB: 2yz8_A
Length = 103
Score = 24.6 bits (54), Expect = 1.9
Identities = 10/56 (17%), Positives = 16/56 (28%), Gaps = 3/56 (5%)
Query: 9 TNPPPKVTLDIGATFVITCETVGVPTPLVSWRLNWNHIPA--KCTTTSEDGVGTLT 62
+ + G + C V P V W N + K + E + L
Sbjct: 12 QEALKDLEVLEGGAATLRCVLSSVAAP-VKWCYGNNVLRPGDKYSLRQEGAMLELV 66
>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex,
costimulation, glycoprotein, immunoglo domain, membrane,
transmembrane, receptor; 1.60A {Mus musculus} PDB:
3bp5_B 3rnq_B 3bov_A 3rnk_B
Length = 202
Score = 25.0 bits (54), Expect = 2.0
Identities = 11/53 (20%), Positives = 17/53 (32%), Gaps = 4/53 (7%)
Query: 11 PPPKVTLDIGATFV-ITCETVGVPTPLVSWRLNWNHIPAKCTTTSEDGVGTLT 62
++ G V +TC+ G P VSW+ T+ G
Sbjct: 108 IDTRILEVPGTGEVQLTCQARGYPLAEVSWQNVSVPAN---TSHIRTPEGLYQ 157
>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion;
2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 184
Score = 24.2 bits (52), Expect = 3.1
Identities = 8/49 (16%), Positives = 16/49 (32%), Gaps = 1/49 (2%)
Query: 9 TNPPPKVTLDIGATFVITCETVGVP-TPLVSWRLNWNHIPAKCTTTSED 56
++ G T ++ C++ VP +W + SE
Sbjct: 87 KAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSES 135
>1zxq_A ICAM-2, intercellular adhesion molecule-2; immunoglobulin fold,
cell adhesion, glycoprotein, transmembr; HET: NAG;
2.20A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4
Length = 192
Score = 24.3 bits (52), Expect = 3.5
Identities = 6/36 (16%), Positives = 13/36 (36%)
Query: 12 PPKVTLDIGATFVITCETVGVPTPLVSWRLNWNHIP 47
P K+ ++ + + C T + + N I
Sbjct: 9 PKKLAVEPKGSLEVNCSTTCNQPEVGGLETSLNKIL 44
>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 103
Score = 23.8 bits (52), Expect = 3.7
Identities = 8/34 (23%), Positives = 11/34 (32%), Gaps = 1/34 (2%)
Query: 9 TNPPPKVTLDIGATFVITCETVGVPTPLVSWRLN 42
P + G + CE TP V W +
Sbjct: 12 IKPLEDQWVAPGEDVELRCELSRAGTP-VHWLKD 44
>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain,
SLOW-type myosin-binding protein C, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 100
Score = 23.4 bits (51), Expect = 5.2
Identities = 10/63 (15%), Positives = 19/63 (30%), Gaps = 5/63 (7%)
Query: 2 TSPAYIKTNPPPKVTLDIGATFVITCETVGVPTPLVSWRLNWNHIPA--KCTTTSEDGVG 59
+S I P T+++G + CE W N + + + +
Sbjct: 5 SSGLKI-LTPLTDQTVNLGKEICLKCEISENIP--GKWTKNGLPVQESDRLKVVQKGRIH 61
Query: 60 TLT 62
L
Sbjct: 62 KLV 64
>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding
domain of CD48, immune system; HET: NAG; 2.60A {Rattus
norvegicus}
Length = 180
Score = 23.7 bits (51), Expect = 5.5
Identities = 6/57 (10%), Positives = 16/57 (28%), Gaps = 5/57 (8%)
Query: 11 PPPKVTLDIGATFVITCETVGVPTPLVSWRLNWNHIPAKC----TTTSEDGVGTLTC 63
P + + + +TCE + + H+ + + + C
Sbjct: 107 SKPMIYWE-CSNATLTCEVLEGTDVELKLYQGKEHLRSLRQKTMSYQWTNLRAPFKC 162
>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region
plasiticity, cell adhesion; HET: PG6; 2.50A {Homo
sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A
Length = 331
Score = 23.6 bits (50), Expect = 6.5
Identities = 12/66 (18%), Positives = 18/66 (27%), Gaps = 4/66 (6%)
Query: 1 MTSPAYIKTNPPPKVTLDI---GATFVITCETV-GVPTPLVSWRLNWNHIPAKCTTTSED 56
M P + V TC + G P +VSW + +
Sbjct: 128 MAKPTNWIEGTQAVLRAKKGQDDKVLVATCTSANGKPPSVVSWETRLKGEAEYQEIRNPN 187
Query: 57 GVGTLT 62
G T+
Sbjct: 188 GTVTVI 193
>1i1c_A IGG2A, IG gamma-2A chain C region; FC, immune system; HET: NAG
FUL BMA MAN FUC; 2.70A {Rattus norvegicus} SCOP:
b.1.1.2 b.1.1.2 PDB: 1i1a_D*
Length = 239
Score = 23.3 bits (50), Expect = 6.5
Identities = 10/33 (30%), Positives = 13/33 (39%)
Query: 11 PPPKVTLDIGATFVITCETVGVPTPLVSWRLNW 43
P K L G T +TC V + R +W
Sbjct: 23 PKTKDVLGGGLTPKVTCVVVDISQNDPEVRFSW 55
>4dep_C Interleukin-1 receptor accessory protein; B-trefoil,
immunoglobulin, immune system, extracellular; HET: NAG;
3.10A {Homo sapiens} PDB: 3o4o_B*
Length = 349
Score = 23.3 bits (49), Expect = 7.8
Identities = 9/51 (17%), Positives = 12/51 (23%), Gaps = 5/51 (9%)
Query: 2 TSPAYIKTNPPPKVTLDIGATFVITCETV-----GVPTPLVSWRLNWNHIP 47
S P ITC V P ++W + I
Sbjct: 117 DSCFNSPMKLPVHKLYIEYGIQRITCPNVDGYFPSSVKPTITWYMGCYKIQ 167
Score = 23.3 bits (49), Expect = 8.4
Identities = 7/47 (14%), Positives = 12/47 (25%), Gaps = 4/47 (8%)
Query: 4 PAYIKTNPPPKVTLDIGATFVITCE----TVGVPTPLVSWRLNWNHI 46
P N + G +I C + V W ++
Sbjct: 225 PVIHSPNDHVVYEKEPGEELLIPCTVYFSFLMDSRNEVWWTIDGKKP 271
>2w59_A IGY FCU3-4; immunoglobulin, avian, immune system; HET: NAG MAN;
1.75A {Gallus gallus}
Length = 231
Score = 23.1 bits (49), Expect = 8.3
Identities = 11/41 (26%), Positives = 16/41 (39%), Gaps = 3/41 (7%)
Query: 2 TSPAYIKTNPPPKVTLDIGATFVITCETVGVPTPL---VSW 39
SP + PP L I + C V +P+ V+W
Sbjct: 10 CSPIQLYAIPPSPGELYISLDAKLRCLVVNLPSDSSLSVTW 50
>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor,
CD32, immunoglobulin superfamily, low responder
polymorphism, cell membrane; HET: NAG; 1.50A {Homo
sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C*
2fcb_A
Length = 170
Score = 22.9 bits (49), Expect = 9.6
Identities = 10/37 (27%), Positives = 16/37 (43%), Gaps = 1/37 (2%)
Query: 12 PPKVTLDIGATFVITCETVGVPTPL-VSWRLNWNHIP 47
PP + + + +TC+ P + W N N IP
Sbjct: 11 PPWINVLQEDSVTLTCQGARSPESDSIQWFHNGNLIP 47
>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta
sandwich, immunoglobulin-like, immune system receptor;
1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A
1e4k_C* 1t83_C* 1t89_C* 3ay4_C*
Length = 175
Score = 22.9 bits (49), Expect = 9.8
Identities = 6/39 (15%), Positives = 14/39 (35%), Gaps = 1/39 (2%)
Query: 12 PPKVTLDIGATFVITCETVGVPTPL-VSWRLNWNHIPAK 49
P ++ + + C+ P W N + I ++
Sbjct: 14 PQWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLISSQ 52
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.134 0.443
Gapped
Lambda K H
0.267 0.0574 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,066,689
Number of extensions: 47838
Number of successful extensions: 374
Number of sequences better than 10.0: 1
Number of HSP's gapped: 370
Number of HSP's successfully gapped: 259
Length of query: 67
Length of database: 6,701,793
Length adjustment: 38
Effective length of query: 29
Effective length of database: 5,640,795
Effective search space: 163583055
Effective search space used: 163583055
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (23.8 bits)