RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy6536
(67 letters)
>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus)
[TaxId: 9031]}
Length = 91
Score = 34.0 bits (77), Expect = 2e-04
Identities = 12/64 (18%), Positives = 19/64 (29%), Gaps = 4/64 (6%)
Query: 4 PAYIKTNPPPKVTLDIGATFVITCETVGVPTPLVSWRLNWNHIPAKCTTTSEDGVGTLTC 63
IK P G + C G P P + WR +K ++ L
Sbjct: 4 APSIKAKFPADTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQTSKWLSS----EPLLHI 59
Query: 64 PDIQ 67
++
Sbjct: 60 QNVD 63
>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia)
[TaxId: 7123]}
Length = 89
Score = 33.6 bits (76), Expect = 3e-04
Identities = 11/43 (25%), Positives = 16/43 (37%)
Query: 3 SPAYIKTNPPPKVTLDIGATFVITCETVGVPTPLVSWRLNWNH 45
S + P + + G I C+ G+P P V W N
Sbjct: 1 SAPKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKP 43
>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor,
FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]}
Length = 97
Score = 32.5 bits (73), Expect = 7e-04
Identities = 8/59 (13%), Positives = 13/59 (22%), Gaps = 3/59 (5%)
Query: 12 PPKVTLDIGATFVITCETVGVPTPLVSWRLNWNHIPA---KCTTTSEDGVGTLTCPDIQ 67
+ T C G P P + W N + +L +
Sbjct: 12 KRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVV 70
>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor,
FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]}
Length = 109
Score = 32.6 bits (73), Expect = 0.001
Identities = 5/45 (11%), Positives = 12/45 (26%)
Query: 3 SPAYIKTNPPPKVTLDIGATFVITCETVGVPTPLVSWRLNWNHIP 47
++ P + +G C+ P + W +
Sbjct: 3 HRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNG 47
>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM)
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 100
Score = 30.6 bits (68), Expect = 0.004
Identities = 13/68 (19%), Positives = 22/68 (32%), Gaps = 4/68 (5%)
Query: 4 PAYIKTNPPPKVTLDIGATFVITCETVGVPTPLVSWRLN----WNHIPAKCTTTSEDGVG 59
P T ++G + + C+ G P P +SW + N D
Sbjct: 4 PTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSS 63
Query: 60 TLTCPDIQ 67
LT ++
Sbjct: 64 ELTIRNVD 71
>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different
modules [TaxId: 9606]}
Length = 98
Score = 29.5 bits (65), Expect = 0.012
Identities = 9/42 (21%), Positives = 11/42 (26%)
Query: 9 TNPPPKVTLDIGATFVITCETVGVPTPLVSWRLNWNHIPAKC 50
T+ G+ VG P P W N I
Sbjct: 8 FERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSD 49
>d2oz4a3 b.1.1.4 (A:367-450) Intercellular adhesion molecule-1,
ICAM-1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 84
Score = 29.2 bits (64), Expect = 0.012
Identities = 7/47 (14%), Positives = 13/47 (27%)
Query: 4 PAYIKTNPPPKVTLDIGATFVITCETVGVPTPLVSWRLNWNHIPAKC 50
P + + P T + C+ G P P + +
Sbjct: 3 PRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLPIG 49
>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus)
[TaxId: 9031]}
Length = 89
Score = 28.7 bits (63), Expect = 0.024
Identities = 9/42 (21%), Positives = 16/42 (38%)
Query: 9 TNPPPKVTLDIGATFVITCETVGVPTPLVSWRLNWNHIPAKC 50
+ DIG+ +C G P P V W + + ++
Sbjct: 5 LDVITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQN 46
>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId:
9606]}
Length = 101
Score = 28.7 bits (63), Expect = 0.026
Identities = 5/39 (12%), Positives = 10/39 (25%)
Query: 9 TNPPPKVTLDIGATFVITCETVGVPTPLVSWRLNWNHIP 47
P + G + + + G +W I
Sbjct: 4 IQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQ 42
>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different
modules [TaxId: 9606]}
Length = 91
Score = 27.5 bits (60), Expect = 0.061
Identities = 10/37 (27%), Positives = 16/37 (43%)
Query: 9 TNPPPKVTLDIGATFVITCETVGVPTPLVSWRLNWNH 45
P +T+ G + +C+T G P P V+W
Sbjct: 3 LTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQV 39
>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3,
N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 91
Score = 26.8 bits (58), Expect = 0.099
Identities = 8/39 (20%), Positives = 15/39 (38%)
Query: 12 PPKVTLDIGATFVITCETVGVPTPLVSWRLNWNHIPAKC 50
P K+T+ G + C G+ P + W + +
Sbjct: 3 PVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLD 41
>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis
elegans) [TaxId: 6239]}
Length = 97
Score = 26.8 bits (58), Expect = 0.12
Identities = 6/42 (14%), Positives = 13/42 (30%)
Query: 9 TNPPPKVTLDIGATFVITCETVGVPTPLVSWRLNWNHIPAKC 50
P + G + C + P+V+W + +
Sbjct: 5 IVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSV 46
>d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans)
[TaxId: 6239]}
Length = 93
Score = 26.5 bits (57), Expect = 0.15
Identities = 7/42 (16%), Positives = 15/42 (35%)
Query: 9 TNPPPKVTLDIGATFVITCETVGVPTPLVSWRLNWNHIPAKC 50
K+ + G T + + +G P P +W + +
Sbjct: 6 LTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAP 47
>d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia)
[TaxId: 7123]}
Length = 97
Score = 26.4 bits (57), Expect = 0.19
Identities = 5/39 (12%), Positives = 10/39 (25%)
Query: 12 PPKVTLDIGATFVITCETVGVPTPLVSWRLNWNHIPAKC 50
+ G +I C P ++ N +
Sbjct: 10 SKDMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNP 48
>d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different
domains {Human (Homo sapiens) [TaxId: 9606]}
Length = 130
Score = 26.2 bits (56), Expect = 0.26
Identities = 7/39 (17%), Positives = 11/39 (28%)
Query: 9 TNPPPKVTLDIGATFVITCETVGVPTPLVSWRLNWNHIP 47
P + + G + G P P V W+
Sbjct: 13 GRIPDTIVVVAGNKLRLDVPISGDPAPTVIWQKAITQGN 51
>d1vcaa2 b.1.1.4 (A:1-90) Vascular cell adhesion molecule-1
(VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 25.9 bits (55), Expect = 0.27
Identities = 19/61 (31%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
Query: 7 IKTNPPPKVTLDIGATFVITCETVGVPTPLVSWRLNWNHIPAKCTTTSEDGVGTLTCPDI 66
I+T P + IG + +TC T G +P SWR P T+E TLT +
Sbjct: 3 IETTPESRYLAQIGDSVSLTCSTTGCESPFFSWR-TQIDSPLNGKVTNEGTTSTLTMNPV 61
Query: 67 Q 67
Sbjct: 62 S 62
>d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM)
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 92
Score = 25.3 bits (54), Expect = 0.40
Identities = 9/37 (24%), Positives = 12/37 (32%)
Query: 9 TNPPPKVTLDIGATFVITCETVGVPTPLVSWRLNWNH 45
N P G VI C+ V P + W+
Sbjct: 5 KNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRD 41
>d1f3rb2 b.1.1.1 (B:139-257) Immunoglobulin light chain kappa
variable domain, VL-kappa {Rat (Rattus norvegicus)
[TaxId: 10116]}
Length = 119
Score = 24.4 bits (52), Expect = 1.0
Identities = 6/42 (14%), Positives = 14/42 (33%)
Query: 9 TNPPPKVTLDIGATFVITCETVGVPTPLVSWRLNWNHIPAKC 50
T P ++ +G ++C+ ++W K
Sbjct: 5 TQSPSLLSASVGDRVTLSCKGSQNINNYLAWYQQKLGEAPKL 46
>d1bg6a1 a.100.1.5 (A:188-359) N-(1-D-carboxylethyl)-L-norvaline
dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}
Length = 172
Score = 24.4 bits (53), Expect = 1.2
Identities = 13/50 (26%), Positives = 17/50 (34%), Gaps = 8/50 (16%)
Query: 2 TSPAYIKTNPPPK-----VTLDIGATFVITC---ETVGVPTPLVSWRLNW 43
+PAY P D+ V V VPTPL+ L+
Sbjct: 89 GNPAYRGIAGPINLNTRYFFEDVSTGLVPLSELGRAVNVPTPLIDAVLDL 138
>d1ow0a2 b.1.1.2 (A:343-450) Immunoglobulin heavy chain alpha
constant domain 3, CH3-alpha {Human (Homo sapiens)
[TaxId: 9606]}
Length = 108
Score = 23.8 bits (51), Expect = 1.5
Identities = 13/55 (23%), Positives = 18/55 (32%), Gaps = 2/55 (3%)
Query: 2 TSPAYIKTNPPPKVTLDIGATFVITCETVGV--PTPLVSWRLNWNHIPAKCTTTS 54
T + PPP L + +TC G LV W +P + T
Sbjct: 2 TFRPEVHLLPPPSEELALNELVTLTCLARGFSPKDVLVRWLQGSQELPREKYLTW 56
>d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus)
[TaxId: 9031]}
Length = 97
Score = 23.3 bits (49), Expect = 2.1
Identities = 7/42 (16%), Positives = 12/42 (28%), Gaps = 3/42 (7%)
Query: 9 TNPPPKVTLDIGA---TFVITCETVGVPTPLVSWRLNWNHIP 47
P G+ +TC P W++N +
Sbjct: 8 EEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELK 49
>d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C,
different domains {Human (Homo sapiens) [TaxId: 9606]}
Length = 110
Score = 23.5 bits (49), Expect = 2.4
Identities = 11/78 (14%), Positives = 20/78 (25%), Gaps = 14/78 (17%)
Query: 4 PAYIKTNPPPKVTLDIGATFVITCETVGVP---TPLVSWRLN-----------WNHIPAK 49
P + P + +G + + G P+V W +
Sbjct: 3 PIGLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDS 62
Query: 50 CTTTSEDGVGTLTCPDIQ 67
S+ + L D Q
Sbjct: 63 YDRASKVYLFELHITDAQ 80
>d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor
{Human (Homo sapiens) [TaxId: 9606]}
Length = 103
Score = 23.0 bits (48), Expect = 3.3
Identities = 9/43 (20%), Positives = 13/43 (30%), Gaps = 4/43 (9%)
Query: 12 PPKVTLDIGAT----FVITCETVGVPTPLVSWRLNWNHIPAKC 50
P +T T + I G P P + W N +
Sbjct: 4 APTITFLESPTSDHHWCIPFTVKGNPKPALQWFYNGAILNESK 46
>d1nbqa1 b.1.1.1 (A:25-129) Junction adhesion molecule, JAM,
N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 105
Score = 22.8 bits (47), Expect = 3.8
Identities = 7/42 (16%), Positives = 15/42 (35%)
Query: 9 TNPPPKVTLDIGATFVITCETVGVPTPLVSWRLNWNHIPAKC 50
+ P+V + ++C G +P V W+ +
Sbjct: 8 HSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLV 49
>d1i1ca1 b.1.1.2 (A:239-341) Immunoglobulin heavy chain gamma
constant domain 2, CH2-gamma {Rat (Rattus norvegicus)
[TaxId: 10116]}
Length = 103
Score = 22.6 bits (48), Expect = 3.9
Identities = 10/35 (28%), Positives = 13/35 (37%)
Query: 11 PPPKVTLDIGATFVITCETVGVPTPLVSWRLNWNH 45
P K L G T +TC V + R +W
Sbjct: 7 PKTKDVLGGGLTPKVTCVVVDISQNDPEVRFSWFI 41
>d1epfa1 b.1.1.4 (A:1-97) Neural cell adhesion molecule (NCAM)
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 97
Score = 22.7 bits (47), Expect = 4.3
Identities = 5/41 (12%), Positives = 12/41 (29%), Gaps = 1/41 (2%)
Query: 11 PPPKVTLDIGATFVITCE-TVGVPTPLVSWRLNWNHIPAKC 50
P + + +G + C+ +SW +
Sbjct: 6 VPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPN 46
>d1i1ra1 b.1.2.1 (A:2-101) Cytokine receptor gp130
cytokine-binding domains {Human (Homo sapiens) [TaxId:
9606]}
Length = 100
Score = 22.5 bits (48), Expect = 4.6
Identities = 14/70 (20%), Positives = 23/70 (32%), Gaps = 10/70 (14%)
Query: 5 AYIKTNPPPKVTLDIGATFVITC-------ETVGVPTPLVSWRLNWNHIPAKCTTTSEDG 57
YI P + + + F C + V + W+ N IP + T
Sbjct: 6 GYISPESP---VVQLHSNFTAVCVLKEKCMDYFHVNANYIVWKTNHFTIPKEQYTIINRT 62
Query: 58 VGTLTCPDIQ 67
++T DI
Sbjct: 63 ASSVTFTDIA 72
>d1oj7a_ e.22.1.2 (A:) Hypothetical oxidoreductase yqhD {Escherichia
coli [TaxId: 562]}
Length = 390
Score = 22.7 bits (47), Expect = 5.3
Identities = 13/38 (34%), Positives = 18/38 (47%)
Query: 27 CETVGVPTPLVSWRLNWNHIPAKCTTTSEDGVGTLTCP 64
E +GVPT L + L+ + IPA E G+ L
Sbjct: 337 FEQLGVPTHLSDYGLDGSSIPALLKKLEEHGMTQLGEN 374
>d2ifga1 b.1.1.4 (A:192-283) High affinity nerve growth factor
receptor TrkA, different domains {Human (Homo sapiens)
[TaxId: 9606]}
Length = 92
Score = 22.4 bits (46), Expect = 5.4
Identities = 8/42 (19%), Positives = 14/42 (33%)
Query: 9 TNPPPKVTLDIGATFVITCETVGVPTPLVSWRLNWNHIPAKC 50
P ++D+G ++ C+ G W L A
Sbjct: 6 KVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATV 47
>d1i9ea_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus
musculus), alpha-chain [TaxId: 10090]}
Length = 115
Score = 22.0 bits (46), Expect = 7.8
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 9 TNPPPKVTLDIGATFVITCETVGVPTPLVSW 39
T P +VT+ GA+ + C+ TP + W
Sbjct: 4 TQPDARVTVSEGASLQLRCKYSYSATPYLFW 34
>d1eaja_ b.1.1.1 (A:) Coxsackie virus and adenovirus receptor
(Car), domain 1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 124
Score = 21.9 bits (45), Expect = 9.2
Identities = 9/43 (20%), Positives = 13/43 (30%)
Query: 9 TNPPPKVTLDIGATFVITCETVGVPTPLVSWRLNWNHIPAKCT 51
T P + G T + C+ P + W PA
Sbjct: 8 TTPEEMIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPADNQ 50
>d1c5cl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa
variable domain, VL-kappa {Mouse (Mus musculus),
cluster 4 [TaxId: 10090]}
Length = 107
Score = 21.5 bits (45), Expect = 9.5
Identities = 8/31 (25%), Positives = 14/31 (45%)
Query: 9 TNPPPKVTLDIGATFVITCETVGVPTPLVSW 39
T P ++ +G +TC T + +SW
Sbjct: 5 TQSPSSLSASLGERVSLTCRTSQEISGYLSW 35
>d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo
sapiens) [TaxId: 9606]}
Length = 101
Score = 21.6 bits (44), Expect = 9.9
Identities = 9/68 (13%), Positives = 21/68 (30%), Gaps = 9/68 (13%)
Query: 9 TNPPPKVTLDIGATFVITCETVGVPTPLV---------SWRLNWNHIPAKCTTTSEDGVG 59
++ G T ++ C++ VP + N ++ +S G
Sbjct: 6 KAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQGRS 65
Query: 60 TLTCPDIQ 67
L ++
Sbjct: 66 ELHIENLN 73
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.134 0.443
Gapped
Lambda K H
0.267 0.0491 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 272,804
Number of extensions: 10271
Number of successful extensions: 91
Number of sequences better than 10.0: 1
Number of HSP's gapped: 91
Number of HSP's successfully gapped: 53
Length of query: 67
Length of database: 2,407,596
Length adjustment: 36
Effective length of query: 31
Effective length of database: 1,913,316
Effective search space: 59312796
Effective search space used: 59312796
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.5 bits)