Query psy6537
Match_columns 66
No_of_seqs 163 out of 1286
Neff 7.4
Searched_HMMs 29240
Date Fri Aug 16 20:33:59 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6537.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6537hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1cr8_A Protein (LOW density li 99.6 8.2E-16 2.8E-20 75.8 4.5 40 27-66 2-41 (42)
2 1ajj_A LR5, low-density lipopr 99.6 1.4E-15 4.6E-20 73.2 3.6 37 28-65 1-37 (37)
3 3a7q_B Low-density lipoprotein 99.6 1.2E-15 4.2E-20 75.8 3.6 40 26-66 5-44 (44)
4 2jm4_A Relaxin receptor 1; LDL 99.6 2.9E-15 9.9E-20 74.1 4.3 40 26-65 4-43 (43)
5 3dpr_E LDL-receptor class A 3; 99.6 2.4E-15 8.2E-20 73.1 3.7 38 29-66 1-39 (39)
6 2m0p_A Low-density lipoprotein 99.6 1.4E-15 4.9E-20 78.1 2.4 40 25-65 3-42 (52)
7 1d2l_A Lipoprotein receptor re 99.5 5.6E-15 1.9E-19 73.9 3.8 38 26-64 3-40 (45)
8 1k7b_A Subgroup A ROUS sarcoma 99.5 3.6E-15 1.2E-19 75.0 2.9 40 26-65 4-47 (47)
9 2i1p_A Low-density lipoprotein 99.5 1E-14 3.5E-19 73.6 2.1 39 27-66 5-44 (48)
10 2knx_A Prolow-density lipoprot 99.5 2.8E-14 9.5E-19 72.7 3.7 38 26-64 4-42 (50)
11 1jrf_A TVA LDL-A module, subgr 99.5 8.3E-15 2.8E-19 73.6 1.0 39 27-65 3-45 (47)
12 1j8e_A Low-density lipoprotein 99.4 2.8E-14 9.7E-19 70.8 2.3 37 27-64 3-39 (44)
13 2fyj_A Low-density lipoprotein 99.4 1.3E-13 4.3E-18 76.3 5.1 59 4-65 21-81 (82)
14 2fyj_A Low-density lipoprotein 99.4 3.4E-13 1.2E-17 74.5 4.7 39 26-65 2-41 (82)
15 2fcw_B LDL receptor, low-densi 99.4 3.9E-14 1.3E-18 78.1 0.2 59 4-65 19-79 (80)
16 2fcw_B LDL receptor, low-densi 99.4 4.6E-13 1.6E-17 73.8 3.3 36 28-64 2-37 (80)
17 2kny_A LRP-1, linker, APO-E; l 99.4 2.3E-13 7.8E-18 75.1 2.1 39 25-63 5-43 (80)
18 2gtl_M Hemoglobin linker chain 99.2 1.8E-11 6.1E-16 78.1 3.3 40 26-65 51-93 (217)
19 2gtl_O Extracellular hemoglobi 99.1 1.9E-11 6.6E-16 77.8 2.0 38 27-65 53-92 (215)
20 2gtl_N Extracellular hemoglobi 99.1 1.1E-10 3.8E-15 74.4 3.8 40 26-65 50-92 (220)
21 3ojy_B Complement component C8 99.0 2.9E-10 9.8E-15 79.7 4.5 36 27-65 66-102 (537)
22 3ojy_A Complement component C8 99.0 4.7E-10 1.6E-14 78.9 4.7 41 23-65 60-101 (554)
23 1n7d_A LDL receptor, low-densi 99.0 6.5E-10 2.2E-14 79.0 5.1 40 25-65 84-123 (699)
24 1n7d_A LDL receptor, low-densi 99.0 7.9E-10 2.7E-14 78.6 5.4 59 4-65 104-164 (699)
25 3m0c_C LDL receptor, low-densi 98.9 2.7E-10 9.2E-15 82.5 0.0 60 3-65 82-141 (791)
26 3m0c_C LDL receptor, low-densi 98.8 8.9E-10 3E-14 79.8 0.0 62 2-65 38-102 (791)
27 3t5o_A Complement component C6 98.6 4.2E-08 1.4E-12 71.9 5.0 36 28-65 118-153 (913)
28 2xrc_A Human complement factor 98.5 3.7E-08 1.3E-12 68.9 3.0 37 28-65 202-239 (565)
29 2xrc_A Human complement factor 98.5 1.2E-07 4.1E-12 66.4 4.9 58 3-65 219-276 (565)
30 1hvw_A Omega-ACTX-HV1A, omega- 36.5 22 0.00076 15.0 1.5 19 28-50 7-25 (26)
31 1i8x_A Granulin-1; two beta-ha 29.0 25 0.00086 15.3 1.1 12 48-59 3-14 (30)
No 1
>1cr8_A Protein (LOW density lipoprotein receptor related protein); ligand binding, calcium binding, LDLR, LRP, lipid binding protein; NMR {Homo sapiens} SCOP: g.12.1.1
Probab=99.61 E-value=8.2e-16 Score=75.81 Aligned_cols=40 Identities=43% Similarity=0.833 Sum_probs=36.2
Q ss_pred CCCCCCceeeCCCCceecCCcCCCCCCCCCCCCCCCCCCC
Q psy6537 27 VSCAWSEFSCHDRLQCVPLSARCNGVSDCRDYSDEVNCGK 66 (66)
Q Consensus 27 ~~C~~~~f~C~~~g~Ci~~~~~CDg~~dC~dgsDE~~C~~ 66 (66)
..|...+|+|.++++||+..|+|||+.||.|||||.+|.+
T Consensus 2 ~~C~~~~F~C~~~g~CI~~~~~CDg~~DC~DgSDE~~C~~ 41 (42)
T 1cr8_A 2 GGCHTDEFQCRLDGLCIPLRWRCDGDTDCMDSSDEKSCEG 41 (42)
T ss_dssp CCSSTTCEECTTTCCEECGGGSSSSSCCSSSSTTTTTCCC
T ss_pred CCCCCCceEeCCCCeEcChhhcCCCCcCCCCCCcccCCCC
Confidence 4688899999855899999999999999999999999964
No 2
>1ajj_A LR5, low-density lipoprotein receptor; LDL receptor, cysteine-rich module, calcium; 1.70A {Homo sapiens} SCOP: g.12.1.1
Probab=99.58 E-value=1.4e-15 Score=73.19 Aligned_cols=37 Identities=46% Similarity=0.922 Sum_probs=34.5
Q ss_pred CCCCCceeeCCCCceecCCcCCCCCCCCCCCCCCCCCC
Q psy6537 28 SCAWSEFSCHDRLQCVPLSARCNGVSDCRDYSDEVNCG 65 (66)
Q Consensus 28 ~C~~~~f~C~~~g~Ci~~~~~CDg~~dC~dgsDE~~C~ 65 (66)
.|+..+|+|.+ |+||+..|+|||+.||.|||||.+|.
T Consensus 1 ~C~~~~f~C~~-g~Ci~~~~~CDg~~DC~DgsDE~~C~ 37 (37)
T 1ajj_A 1 PCSAFEFHCLS-GECIHSSWRCDGGPDCKDKSDEENCA 37 (37)
T ss_dssp CCCTTCEECTT-SCEECGGGTTSSSCCSTTCGGGTTCC
T ss_pred CCCCCceEcCC-CCeechhhccCCCCCCCCCccccCCC
Confidence 37889999998 99999999999999999999999984
No 3
>3a7q_B Low-density lipoprotein receptor-related protein; signaling protein; HET: NAG; 2.60A {Homo sapiens}
Probab=99.58 E-value=1.2e-15 Score=75.84 Aligned_cols=40 Identities=38% Similarity=0.830 Sum_probs=34.1
Q ss_pred CCCCCCCceeeCCCCceecCCcCCCCCCCCCCCCCCCCCCC
Q psy6537 26 TVSCAWSEFSCHDRLQCVPLSARCNGVSDCRDYSDEVNCGK 66 (66)
Q Consensus 26 ~~~C~~~~f~C~~~g~Ci~~~~~CDg~~dC~dgsDE~~C~~ 66 (66)
...|+..+|+|.+ ++||+..|+|||+.||.|+|||.+|.+
T Consensus 5 ~~~C~~~~f~C~~-g~CI~~~~~CDg~~DC~DgSDE~~C~~ 44 (44)
T 3a7q_B 5 AKECEKDQFQCRN-ERCIPSVWRCDEDDDCLDHSDEDDCPK 44 (44)
T ss_dssp ---CCTTEEECTT-SCEEEGGGTTSSSCCSSSSTTTSCC--
T ss_pred CCCCCCCceEcCC-CCEeChhhccCCCCCCCCCccccCCCC
Confidence 4568899999999 999999999999999999999999964
No 4
>2jm4_A Relaxin receptor 1; LDL-A module, RXFP1 receptor, LGR7, signaling protein; NMR {Homo sapiens}
Probab=99.57 E-value=2.9e-15 Score=74.15 Aligned_cols=40 Identities=43% Similarity=0.975 Sum_probs=36.5
Q ss_pred CCCCCCCceeeCCCCceecCCcCCCCCCCCCCCCCCCCCC
Q psy6537 26 TVSCAWSEFSCHDRLQCVPLSARCNGVSDCRDYSDEVNCG 65 (66)
Q Consensus 26 ~~~C~~~~f~C~~~g~Ci~~~~~CDg~~dC~dgsDE~~C~ 65 (66)
...|+.++|+|.++++||+..|+|||+.||.|+|||.+|.
T Consensus 4 ~~~C~~~~f~C~~~g~CI~~~~~CDg~~DC~DgSDE~~C~ 43 (43)
T 2jm4_A 4 DVKCSLGYFPCGNITKCLPQLLHCNGVDDCGNQADEDNCG 43 (43)
T ss_dssp SCSCCTTEEECSSSSCEEEGGGTTSSCCCSSSCCTTSSCC
T ss_pred CCCCCCCeeECCCCCeEcCHhhccCCCCCCCCCcccCCCC
Confidence 4568899999988679999999999999999999999984
No 5
>3dpr_E LDL-receptor class A 3; human rhinovirus, VLDL-receptor, virus-protein complex, icosahedral virus, ATP-binding, capsid protein; HET: DAO; 3.50A {Homo sapiens} PDB: 1v9u_5*
Probab=99.56 E-value=2.4e-15 Score=73.07 Aligned_cols=38 Identities=47% Similarity=1.008 Sum_probs=34.5
Q ss_pred CCCCceeeCC-CCceecCCcCCCCCCCCCCCCCCCCCCC
Q psy6537 29 CAWSEFSCHD-RLQCVPLSARCNGVSDCRDYSDEVNCGK 66 (66)
Q Consensus 29 C~~~~f~C~~-~g~Ci~~~~~CDg~~dC~dgsDE~~C~~ 66 (66)
|++.+|+|.+ +++||+..|+|||+.||.|+|||.+|..
T Consensus 1 C~~~~f~C~~~~g~Cip~~~~CDg~~DC~dgsDE~~C~~ 39 (39)
T 3dpr_E 1 CRIHEISCGAHSTQCIPVSWRCDGENDCDSGEDEENCGN 39 (39)
T ss_dssp CCTTTCCCSSSSSCCCCTTSSSSSSCCSTTTTTSTTCCC
T ss_pred CCCCceecCCCCCCEeCccccCCCcccCcCCcccccCCC
Confidence 6778999986 4899999999999999999999999964
No 6
>2m0p_A Low-density lipoprotein receptor-related protein; complement type repeat, megalin, LDL receptor FAMI lipid binding protein; NMR {Homo sapiens}
Probab=99.55 E-value=1.4e-15 Score=78.14 Aligned_cols=40 Identities=35% Similarity=0.764 Sum_probs=36.4
Q ss_pred CCCCCCCCceeeCCCCceecCCcCCCCCCCCCCCCCCCCCC
Q psy6537 25 PTVSCAWSEFSCHDRLQCVPLSARCNGVSDCRDYSDEVNCG 65 (66)
Q Consensus 25 ~~~~C~~~~f~C~~~g~Ci~~~~~CDg~~dC~dgsDE~~C~ 65 (66)
++..|+..+|+|.+ |+||+..|+|||+.||.|||||.+|.
T Consensus 3 ~p~~C~~~~F~C~n-G~CIp~~~~CDG~~DC~DgSDE~~~~ 42 (52)
T 2m0p_A 3 APASCLDTQYTCDN-HQCISKNWVCDTDNDCGDGSDEKNCN 42 (52)
T ss_dssp CCCSSCSSEEECTT-CCEEETTSTTSSSCSSSSCHHHHSCC
T ss_pred CCCCCCCCceECCC-CCEEecCccCCCCCCCCCCCccccch
Confidence 45679999999998 99999999999999999999998763
No 7
>1d2l_A Lipoprotein receptor related protein; ligand binding, calcium binding, complement-like repeat, signaling protein; NMR {Homo sapiens} SCOP: g.12.1.1
Probab=99.54 E-value=5.6e-15 Score=73.87 Aligned_cols=38 Identities=34% Similarity=0.750 Sum_probs=35.1
Q ss_pred CCCCCCCceeeCCCCceecCCcCCCCCCCCCCCCCCCCC
Q psy6537 26 TVSCAWSEFSCHDRLQCVPLSARCNGVSDCRDYSDEVNC 64 (66)
Q Consensus 26 ~~~C~~~~f~C~~~g~Ci~~~~~CDg~~dC~dgsDE~~C 64 (66)
+..|+..+|+|.+ ++||+..|+|||+.||.|||||..|
T Consensus 3 ~~~C~~~~F~C~~-g~CI~~~~~CDG~~DC~DgSDE~~c 40 (45)
T 1d2l_A 3 PPQCQPGEFACAN-SRCIQERWKCDGDNDCLDNSDEAPA 40 (45)
T ss_dssp CCBTTBTCEEETT-TEEECGGGTTTSSCTTTTCSTTSTT
T ss_pred CCcCCCCceEcCC-CCeEehhhccCCCCCCCCCCCCCCC
Confidence 4568889999999 9999999999999999999999876
No 8
>1k7b_A Subgroup A ROUS sarcoma virus receptor PG800 and PG950; beta hairpin, 3-10 helix, calcium binding, membrane protein; NMR {Coturnix coturnix} SCOP: g.12.1.1
Probab=99.53 E-value=3.6e-15 Score=74.97 Aligned_cols=40 Identities=38% Similarity=0.789 Sum_probs=34.7
Q ss_pred CCCCCCCceeeCC----CCceecCCcCCCCCCCCCCCCCCCCCC
Q psy6537 26 TVSCAWSEFSCHD----RLQCVPLSARCNGVSDCRDYSDEVNCG 65 (66)
Q Consensus 26 ~~~C~~~~f~C~~----~g~Ci~~~~~CDg~~dC~dgsDE~~C~ 65 (66)
...|++.+|+|.+ .++||+..|+|||+.||.|||||.+|.
T Consensus 4 ~~~C~~~~F~C~~~~~~~g~CIp~~~~CDG~~DC~DgSDE~~C~ 47 (47)
T 1k7b_A 4 FGSCPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDEWGCG 47 (47)
T ss_dssp --CCSTTEECCSSCTTSCCCCEEGGGSSCSSCCSSSSTTTGGGC
T ss_pred CCCCCCCceEcCCCCCCCCcCCCccccCCCcCCCCCCcccCCCC
Confidence 3568899999983 389999999999999999999999884
No 9
>2i1p_A Low-density lipoprotein receptor-related protein 2; cysteine-rich repeat, ligand binding domain, calcium CAGE, ligand binding protein; NMR {Rattus norvegicus}
Probab=99.48 E-value=1e-14 Score=73.65 Aligned_cols=39 Identities=44% Similarity=0.969 Sum_probs=35.9
Q ss_pred CCCCCCceeeCCCC-ceecCCcCCCCCCCCCCCCCCCCCCC
Q psy6537 27 VSCAWSEFSCHDRL-QCVPLSARCNGVSDCRDYSDEVNCGK 66 (66)
Q Consensus 27 ~~C~~~~f~C~~~g-~Ci~~~~~CDg~~dC~dgsDE~~C~~ 66 (66)
..|...+|+|.+ + +||+..|+|||+.||.|||||.+|.+
T Consensus 5 ~~C~~~~F~C~~-g~~CI~~~~~CDG~~DC~DgSDE~~C~~ 44 (48)
T 2i1p_A 5 LNCTSAQFKCAD-GSSCINSRYRCDGVYDCRDNSDEAGCPT 44 (48)
T ss_dssp CCCCSSSEECSS-SSCEECGGGSSSSSCCSSSSHHHHSSCS
T ss_pred CCCCCCeeECCC-CCEeCCHhhcCCCCCCCCCCcccccCCC
Confidence 568889999999 7 89999999999999999999999863
No 10
>2knx_A Prolow-density lipoprotein receptor-related prote; LDLR, ligand binding module, ligand binding repeat, compleme repeat, protein binding; NMR {Homo sapiens}
Probab=99.48 E-value=2.8e-14 Score=72.70 Aligned_cols=38 Identities=39% Similarity=0.684 Sum_probs=34.6
Q ss_pred CCCCCCCceeeC-CCCceecCCcCCCCCCCCCCCCCCCCC
Q psy6537 26 TVSCAWSEFSCH-DRLQCVPLSARCNGVSDCRDYSDEVNC 64 (66)
Q Consensus 26 ~~~C~~~~f~C~-~~g~Ci~~~~~CDg~~dC~dgsDE~~C 64 (66)
...|++.+|+|. + ++||+..|+|||+.||.|||||..|
T Consensus 4 ~~~C~~~~F~C~~~-g~CI~~~~~CDG~~DC~DgSDE~~C 42 (50)
T 2knx_A 4 GKTCGPSSFSCPGT-HVCVPERWLCDGDKDCADGADESIA 42 (50)
T ss_dssp TCTTCTTEEEETTT-TEEEETTTTTSSSCCSTTCGGGSGG
T ss_pred CCCCCCCcEEcCCC-CeEcChhhcCCCCCCCCCCCccccc
Confidence 456999999996 6 9999999999999999999999876
No 11
>1jrf_A TVA LDL-A module, subgroup A ROUS sarcoma virus receptors PG800 and PG950; disulfide bond, alpha helix, calcium CAGE, signaling protein; NMR {Coturnix japonica} SCOP: g.12.1.1
Probab=99.46 E-value=8.3e-15 Score=73.59 Aligned_cols=39 Identities=36% Similarity=0.827 Sum_probs=34.9
Q ss_pred CCCCCCceeeCC----CCceecCCcCCCCCCCCCCCCCCCCCC
Q psy6537 27 VSCAWSEFSCHD----RLQCVPLSARCNGVSDCRDYSDEVNCG 65 (66)
Q Consensus 27 ~~C~~~~f~C~~----~g~Ci~~~~~CDg~~dC~dgsDE~~C~ 65 (66)
..|+..+|+|.+ .++||+..|+|||+.||.|||||.+|.
T Consensus 3 ~~C~~~~F~C~~~~~~~~~CIp~~~~CDG~~DC~DgSDE~~C~ 45 (47)
T 1jrf_A 3 SRCPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDEWGCG 45 (47)
T ss_dssp CCCCCCCSCSSSCSCCCTTTSGGGGSSSSSCCSSSSCTTHHHH
T ss_pred CCCCCCeeECCCCCCCCCeEcCHhhcCCCCcCCCCCcccccCC
Confidence 468899999983 389999999999999999999998874
No 12
>1j8e_A Low-density lipoprotein receptor-related protein 1; ligand binding, calcium binding, complement-like repeat, LRP receptor, signaling protein; 1.85A {Homo sapiens} SCOP: g.12.1.1
Probab=99.45 E-value=2.8e-14 Score=70.84 Aligned_cols=37 Identities=41% Similarity=0.933 Sum_probs=34.1
Q ss_pred CCCCCCceeeCCCCceecCCcCCCCCCCCCCCCCCCCC
Q psy6537 27 VSCAWSEFSCHDRLQCVPLSARCNGVSDCRDYSDEVNC 64 (66)
Q Consensus 27 ~~C~~~~f~C~~~g~Ci~~~~~CDg~~dC~dgsDE~~C 64 (66)
..|++.+|+|.+ ++||+..|+|||+.||.|+|||..|
T Consensus 3 ~~C~~~~F~C~~-g~CI~~~~~CDg~~DC~DgSDE~~~ 39 (44)
T 1j8e_A 3 HSCSSTQFKCNS-GRCIPEHWTCDGDNDCGDYSDETHA 39 (44)
T ss_dssp SSSCTTEEECTT-SCEEEGGGTTSSSCCSSSSGGGSHH
T ss_pred CCCCCCceEeCC-CCeEecCcccCCCCCCCCCCCCCCc
Confidence 468899999998 9999999999999999999999753
No 13
>2fyj_A Low-density lipoprotein receptor-related protein 1; double module, complement type repeat, calcium, beta-2 hairpin, loop-structures; NMR {Homo sapiens} PDB: 2fyl_B
Probab=99.45 E-value=1.3e-13 Score=76.29 Aligned_cols=59 Identities=25% Similarity=0.494 Sum_probs=45.3
Q ss_pred EEecCCCcccCCCCCCCC-CCCCCCCCCC-CceeeCCCCceecCCcCCCCCCCCCCCCCCCCCC
Q psy6537 4 IRLCLGCATSYVPPVTTP-AYYPTVSCAW-SEFSCHDRLQCVPLSARCNGVSDCRDYSDEVNCG 65 (66)
Q Consensus 4 ~~~~~g~~~~~~~~~~~~-~~~~~~~C~~-~~f~C~~~g~Ci~~~~~CDg~~dC~dgsDE~~C~ 65 (66)
.++|+|..... ..+++ .-.....|.+ .+|+|.+ ++||+..|+|||+.||.|||||.+|.
T Consensus 21 ~~~CDg~~DC~--DgsDE~~~C~~~~C~~~~~f~C~~-g~CI~~~~~CDG~~DC~DgSDE~~C~ 81 (82)
T 2fyj_A 21 SWTCDLDDDCG--DRSDESASCAYPTCFPLTQFTCNN-GRCININWRCDNDNDCGDNSDEAGCS 81 (82)
T ss_dssp TSSSSCSSSSC--STTTTTSSCCCSSSCSSSEEECTT-SCEEETTCBSSSSBCCSSSSSCSCCC
T ss_pred cccCCCcccCC--CccccccccccccCCCCCceECCC-CCeEcHHHccCCCCcCCCCccccCCC
Confidence 45777776643 33333 2234456854 8999998 99999999999999999999999986
No 14
>2fyj_A Low-density lipoprotein receptor-related protein 1; double module, complement type repeat, calcium, beta-2 hairpin, loop-structures; NMR {Homo sapiens} PDB: 2fyl_B
Probab=99.40 E-value=3.4e-13 Score=74.52 Aligned_cols=39 Identities=38% Similarity=0.845 Sum_probs=35.5
Q ss_pred CCCCCCCceeeCCCCceecCCcCCCCCCCCCCCCCC-CCCC
Q psy6537 26 TVSCAWSEFSCHDRLQCVPLSARCNGVSDCRDYSDE-VNCG 65 (66)
Q Consensus 26 ~~~C~~~~f~C~~~g~Ci~~~~~CDg~~dC~dgsDE-~~C~ 65 (66)
...|++.+|+|.+ |+||+..|+|||+.||.||||| .+|.
T Consensus 2 ~~~C~~~~f~C~~-g~Ci~~~~~CDg~~DC~DgsDE~~~C~ 41 (82)
T 2fyj_A 2 ARTCPPNQFSCAS-GRCIPISWTCDLDDDCGDRSDESASCA 41 (82)
T ss_dssp CSSSCTTEEETTS-SCEEETTSSSSCSSSSCSTTTTTSSCC
T ss_pred CCCCCCCceEeCC-CCEEeccccCCCcccCCCccccccccc
Confidence 3568999999998 9999999999999999999999 7774
No 15
>2fcw_B LDL receptor, low-density lipoprotein receptor; protein-protein complex, RAP, escort protein, calcium- binding; 1.26A {Homo sapiens} SCOP: g.12.1.1 g.12.1.1 PDB: 2kri_B
Probab=99.38 E-value=3.9e-14 Score=78.14 Aligned_cols=59 Identities=27% Similarity=0.557 Sum_probs=43.0
Q ss_pred EEecCCCcccCCCCCCCCCCCCCCCCCCCceeeCCCCceecCCcCCCCCCCCCCCCCC--CCCC
Q psy6537 4 IRLCLGCATSYVPPVTTPAYYPTVSCAWSEFSCHDRLQCVPLSARCNGVSDCRDYSDE--VNCG 65 (66)
Q Consensus 4 ~~~~~g~~~~~~~~~~~~~~~~~~~C~~~~f~C~~~g~Ci~~~~~CDg~~dC~dgsDE--~~C~ 65 (66)
.++|+|..... ..+++.-.....|++.+|+|.+ ++||+..|+|||+.||.||||| .+|.
T Consensus 19 ~~~CDg~~DC~--DgSDE~~C~~~~C~~~~f~C~~-g~Ci~~~~~CDg~~DC~dgsDE~~~~C~ 79 (80)
T 2fcw_B 19 QFVCDSDRDCL--DGSDEASCPVLTCGPASFQCNS-STCIPQLWACDNDPDCEDGSDEWPQRCR 79 (80)
T ss_dssp GGTTSSSCCST--TCTTTTTHHHHHCCTTEEECTT-SCEEEGGGTTSSSCCSTTCGGGCGGGC-
T ss_pred ecccCCcccCC--CcccccccccccCCceeeECCC-CCEEecccccCCCcCCCCCCCcCcccCC
Confidence 45666666532 3333332223468889999998 9999999999999999999999 7775
No 16
>2fcw_B LDL receptor, low-density lipoprotein receptor; protein-protein complex, RAP, escort protein, calcium- binding; 1.26A {Homo sapiens} SCOP: g.12.1.1 g.12.1.1 PDB: 2kri_B
Probab=99.35 E-value=4.6e-13 Score=73.82 Aligned_cols=36 Identities=42% Similarity=0.922 Sum_probs=34.1
Q ss_pred CCCCCceeeCCCCceecCCcCCCCCCCCCCCCCCCCC
Q psy6537 28 SCAWSEFSCHDRLQCVPLSARCNGVSDCRDYSDEVNC 64 (66)
Q Consensus 28 ~C~~~~f~C~~~g~Ci~~~~~CDg~~dC~dgsDE~~C 64 (66)
.|++.+|+|.+ |+||+..|+|||+.||.|||||.+|
T Consensus 2 ~C~~~~F~C~~-g~CI~~~~~CDg~~DC~DgSDE~~C 37 (80)
T 2fcw_B 2 TCSQAEFRCHD-GKCISRQFVCDSDRDCLDGSDEASC 37 (80)
T ss_dssp CCCTTEEECTT-SCEEEGGGTTSSSCCSTTCTTTTTH
T ss_pred CCCCCccCCCC-CCEEeeecccCCcccCCCccccccc
Confidence 58899999998 9999999999999999999999886
No 17
>2kny_A LRP-1, linker, APO-E; lipoprotein receptor, ligand binding module, COMP repeat, calcium, cell membrane, coated PIT, cytoplasm, DEVE protein; NMR {Homo sapiens}
Probab=99.35 E-value=2.3e-13 Score=75.12 Aligned_cols=39 Identities=38% Similarity=0.657 Sum_probs=34.7
Q ss_pred CCCCCCCCceeeCCCCceecCCcCCCCCCCCCCCCCCCC
Q psy6537 25 PTVSCAWSEFSCHDRLQCVPLSARCNGVSDCRDYSDEVN 63 (66)
Q Consensus 25 ~~~~C~~~~f~C~~~g~Ci~~~~~CDg~~dC~dgsDE~~ 63 (66)
+...|++.+|+|.+++.||+..|+|||+.||.|||||..
T Consensus 5 ~~~~C~~~~f~C~~~g~CIp~~~~CDg~~DC~DgsDE~~ 43 (80)
T 2kny_A 5 EGKTCGPSSFSCPGTHVCVPERWLCDGDKDCADGADESI 43 (80)
T ss_dssp SSCCCSSSEEECTTSSCEEEHHHHTTSSCCSSSSTTTSG
T ss_pred CCCCCCCCceecCCCCeEcChhhcCCCCCCCCCCCcccc
Confidence 346799999999854899999999999999999999984
No 18
>2gtl_M Hemoglobin linker chain L1; annelid erythrocruorins, respiratory protein, hexagonal bilayer, dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1
Probab=99.15 E-value=1.8e-11 Score=78.06 Aligned_cols=40 Identities=35% Similarity=0.651 Sum_probs=35.2
Q ss_pred CCCCCCCceeeCC-CCceecCCcCCCCCCCCCCCCCCC--CCC
Q psy6537 26 TVSCAWSEFSCHD-RLQCVPLSARCNGVSDCRDYSDEV--NCG 65 (66)
Q Consensus 26 ~~~C~~~~f~C~~-~g~Ci~~~~~CDg~~dC~dgsDE~--~C~ 65 (66)
...|++.+|+|.+ +|.||+..|+|||..||.|||||. +|.
T Consensus 51 ~~~C~~~~F~C~~~~g~CI~~~~~CDG~~DC~DgSDE~~~~C~ 93 (217)
T 2gtl_M 51 EHHCDEHESECRGDVPECIHDLLFCDGEKDCRDGSDEDPETCS 93 (217)
T ss_dssp CCCCCTTEEECSSSSCCEEEGGGTTSSSCCSSSSTTTSHHHHC
T ss_pred CCCCCCCceecCCCCCcEechhhccCCCCCCCCCCccccCcCC
Confidence 4579999999964 589999999999999999999997 564
No 19
>2gtl_O Extracellular hemoglobin linker L3 subunit; annelid erythrocruorins, respiratory protein, hexagonal bilayer, dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1
Probab=99.11 E-value=1.9e-11 Score=77.80 Aligned_cols=38 Identities=39% Similarity=0.807 Sum_probs=34.8
Q ss_pred CCCCCCceee--CCCCceecCCcCCCCCCCCCCCCCCCCCC
Q psy6537 27 VSCAWSEFSC--HDRLQCVPLSARCNGVSDCRDYSDEVNCG 65 (66)
Q Consensus 27 ~~C~~~~f~C--~~~g~Ci~~~~~CDg~~dC~dgsDE~~C~ 65 (66)
..|+.++|+| .+ |+|||..|+|||..||.|||||.+|.
T Consensus 53 ~~C~~~~F~C~~~~-g~CIp~~~~CDG~~DC~DgSDE~~C~ 92 (215)
T 2gtl_O 53 PSCDEHEHQCGGDD-PQCISKLFVCDGHNDCRNGEDEKDCT 92 (215)
T ss_dssp CSSCTTEEECCSSS-CCEEEGGGTTSSSCCSSSCHHHHCCC
T ss_pred CCCCCcceeeCCCC-CcCccccccCCCCCcCCCcccccCCC
Confidence 3588899999 56 99999999999999999999999885
No 20
>2gtl_N Extracellular hemoglobin linker L2 subunit; annelid erythrocruorins, respiratory protein, hexagonal bilayer, dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1
Probab=99.06 E-value=1.1e-10 Score=74.42 Aligned_cols=40 Identities=28% Similarity=0.683 Sum_probs=34.7
Q ss_pred CCCCCCCceeeC-CCCceecCCcCCCCCCCCCCCCCCC--CCC
Q psy6537 26 TVSCAWSEFSCH-DRLQCVPLSARCNGVSDCRDYSDEV--NCG 65 (66)
Q Consensus 26 ~~~C~~~~f~C~-~~g~Ci~~~~~CDg~~dC~dgsDE~--~C~ 65 (66)
...|+..+|+|. ++|+||+..|+|||..||.|||||. +|.
T Consensus 50 ~~~C~~~eFqC~~~~g~CIp~~wvCDG~~DC~DGSDE~~~~C~ 92 (220)
T 2gtl_N 50 GTHCEKRTFQCGGNEQECISDLLVCDGHKDCHNAHDEDPDVCD 92 (220)
T ss_dssp CCSSCTTEEECCSSSCCEEETTTTTSSSCCSTTCTTSCGGGGC
T ss_pred CCCCCCCccCcCCCCCcEeCcceecCCCCCCCCCCccCcccCC
Confidence 356889999995 2389999999999999999999996 774
No 21
>3ojy_B Complement component C8 beta chain; macpf, lipocalin, immune system; HET: TPO BMA; 2.51A {Homo sapiens}
Probab=99.00 E-value=2.9e-10 Score=79.67 Aligned_cols=36 Identities=47% Similarity=0.917 Sum_probs=33.0
Q ss_pred CCCCCCceeeC-CCCceecCCcCCCCCCCCCCCCCCCCCC
Q psy6537 27 VSCAWSEFSCH-DRLQCVPLSARCNGVSDCRDYSDEVNCG 65 (66)
Q Consensus 27 ~~C~~~~f~C~-~~g~Ci~~~~~CDg~~dC~dgsDE~~C~ 65 (66)
..| .+|+|. + |+||+..|+|||..||.|+|||.+|.
T Consensus 66 ~~c--~~f~C~~~-g~Ci~~~~~Cdg~~dC~d~sdE~~c~ 102 (537)
T 3ojy_B 66 VRC--EGFVCAQT-GRCVNRRLLCNGDNDCGDQSDEANCR 102 (537)
T ss_dssp SCC--SSEECTTT-CCEECGGGTTSSSCCSSSSCTTSSCS
T ss_pred CCC--CccCcCCC-CcEeeccccCCCCCCCCCccccccCC
Confidence 445 799999 7 99999999999999999999999985
No 22
>3ojy_A Complement component C8 alpha chain; macpf, lipocalin, immune system; HET: TPO BMA; 2.51A {Homo sapiens}
Probab=98.97 E-value=4.7e-10 Score=78.94 Aligned_cols=41 Identities=34% Similarity=0.737 Sum_probs=34.7
Q ss_pred CCCCCCCCCCceeeC-CCCceecCCcCCCCCCCCCCCCCCCCCC
Q psy6537 23 YYPTVSCAWSEFSCH-DRLQCVPLSARCNGVSDCRDYSDEVNCG 65 (66)
Q Consensus 23 ~~~~~~C~~~~f~C~-~~g~Ci~~~~~CDg~~dC~dgsDE~~C~ 65 (66)
|.....|+ .+|+|. + |+||+..|+|||..||.|+|||.+|.
T Consensus 60 c~~~~~c~-~~f~C~~~-g~Ci~~~~~Cdg~~dC~d~sDE~~C~ 101 (554)
T 3ojy_A 60 CVRQAQCG-QDFQCKET-GRCLKRHLVCNGDQDCLDGSDEDDCE 101 (554)
T ss_dssp C--CCCCS-SSEECSSS-CCEECGGGTTSSSCCSSSCTTSSSCC
T ss_pred CcccCCCC-CcCccCCC-CEEcccccccCCcccCCCccccccCC
Confidence 33345574 799999 7 99999999999999999999999986
No 23
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=98.96 E-value=6.5e-10 Score=79.05 Aligned_cols=40 Identities=40% Similarity=0.861 Sum_probs=29.9
Q ss_pred CCCCCCCCceeeCCCCceecCCcCCCCCCCCCCCCCCCCCC
Q psy6537 25 PTVSCAWSEFSCHDRLQCVPLSARCNGVSDCRDYSDEVNCG 65 (66)
Q Consensus 25 ~~~~C~~~~f~C~~~g~Ci~~~~~CDg~~dC~dgsDE~~C~ 65 (66)
....|...+|+|.+ ++||+..|+|||..||.|||||.+|.
T Consensus 84 ~~~~C~~~~f~C~~-g~Ci~~~~~Cdg~~dC~dgsDE~~C~ 123 (699)
T 1n7d_A 84 PPKTCSQDEFRCHD-GKCISRQFVCDSDRDCLDGSDEASCP 123 (699)
T ss_dssp SSCCCCSSCCCSSC-C----CCCTTCSSCCSSSSCSSSSCC
T ss_pred cccccccCcEEcCC-CCEecHHHcCCCcCcCCCCCccCCcC
Confidence 34568888899988 88999999999999999999998774
No 24
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=98.96 E-value=7.9e-10 Score=78.61 Aligned_cols=59 Identities=27% Similarity=0.544 Sum_probs=45.4
Q ss_pred EEecCCCcccCCCCCCCCCCCCCCCCCCCceeeCCCCceecCCcCCCCCCCCCCCCCC--CCCC
Q psy6537 4 IRLCLGCATSYVPPVTTPAYYPTVSCAWSEFSCHDRLQCVPLSARCNGVSDCRDYSDE--VNCG 65 (66)
Q Consensus 4 ~~~~~g~~~~~~~~~~~~~~~~~~~C~~~~f~C~~~g~Ci~~~~~CDg~~dC~dgsDE--~~C~ 65 (66)
.++|+|.... ...+++.-+....|++.+|+|.+ ++||+..|+|||+.||.|+||| .+|.
T Consensus 104 ~~~Cdg~~dC--~dgsDE~~C~~~~C~~~~f~C~~-~~Ci~~~~~Cdg~~dC~dgsDE~~~~C~ 164 (699)
T 1n7d_A 104 QFVCDSDRDC--LDGSDEASCPVLTCGPASFQCNS-STCIPQLWACDNDPDCEDGSDEWPQRCR 164 (699)
T ss_dssp CCTTCSSCCS--SSSCSSSSCCCCCCCSSCCCCSS-SCCCCTTSTTCSSCCSSSSSSSSCSSSS
T ss_pred HHcCCCcCcC--CCCCccCCcCccccCccccCCCC-CcccchhcccCCCCcCCCCcccccccCC
Confidence 4556666543 23334433455689999999988 9999999999999999999999 7774
No 25
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=98.85 E-value=2.7e-10 Score=82.47 Aligned_cols=60 Identities=30% Similarity=0.568 Sum_probs=0.0
Q ss_pred cEEecCCCcccCCCCCCCCCCCCCCCCCCCceeeCCCCceecCCcCCCCCCCCCCCCCCCCCC
Q psy6537 3 YIRLCLGCATSYVPPVTTPAYYPTVSCAWSEFSCHDRLQCVPLSARCNGVSDCRDYSDEVNCG 65 (66)
Q Consensus 3 ~~~~~~g~~~~~~~~~~~~~~~~~~~C~~~~f~C~~~g~Ci~~~~~CDg~~dC~dgsDE~~C~ 65 (66)
..++|+|.... ....++.-+....|+..+|+|.+ |+||+..|+|||..||.|+|||.+|.
T Consensus 82 ~~~~CDg~~dC--~dgsDE~~C~~~~C~~~~f~C~~-g~Ci~~~~~CDg~~dC~dgsDE~~C~ 141 (791)
T 3m0c_C 82 QFWRCDGQVDC--DNGSDEQGCPPKTCSQDEFRCHD-GKCISRQFVCDSDRDCLDGSDEASCP 141 (791)
T ss_dssp ---------------------------------------------------------------
T ss_pred ccccCCCCcCc--CCCcccCCccCccccCCeEECCC-CCEECHHHcCCCcccCCCCccccccc
Confidence 34567766653 23333333344578888999988 89999999999999999999998874
No 26
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=98.76 E-value=8.9e-10 Score=79.77 Aligned_cols=62 Identities=32% Similarity=0.634 Sum_probs=0.0
Q ss_pred ccEEecCCCcccCCCCCCCCCC--CCCCCCCCCceeeCC-CCceecCCcCCCCCCCCCCCCCCCCCC
Q psy6537 2 KYIRLCLGCATSYVPPVTTPAY--YPTVSCAWSEFSCHD-RLQCVPLSARCNGVSDCRDYSDEVNCG 65 (66)
Q Consensus 2 ~~~~~~~g~~~~~~~~~~~~~~--~~~~~C~~~~f~C~~-~g~Ci~~~~~CDg~~dC~dgsDE~~C~ 65 (66)
...++|+|..... ..+++.. +....|.+.+|+|.+ .++||+..|+|||+.||.|+|||.+|.
T Consensus 38 ~~~~~CDg~~dC~--D~sDE~~~~C~~~~C~~~~f~C~~~~~~Ci~~~~~CDg~~dC~dgsDE~~C~ 102 (791)
T 3m0c_C 38 SYKWVCDGSAECQ--DGSDESQETCLSVTCKSGDFSCGGRVNRCIPQFWRCDGQVDCDNGSDEQGCP 102 (791)
T ss_dssp -------------------------------------------------------------------
T ss_pred ehhhcCCCCccCC--CCCcccccccccCccCcCccccCCCCCCEeeccccCCCCcCcCCCcccCCcc
Confidence 3567788877643 3333321 345679999999986 369999999999999999999999884
No 27
>3t5o_A Complement component C6; macpf, MAC, membrane attack complex, innate IMMU system, blood, membrane, cytolysin, immune SYST; HET: NAG FUL FUC BGC MAN; 2.87A {Homo sapiens} PDB: 4a5w_B* 4e0s_B*
Probab=98.61 E-value=4.2e-08 Score=71.94 Aligned_cols=36 Identities=42% Similarity=1.019 Sum_probs=32.6
Q ss_pred CCCCCceeeCCCCceecCCcCCCCCCCCCCCCCCCCCC
Q psy6537 28 SCAWSEFSCHDRLQCVPLSARCNGVSDCRDYSDEVNCG 65 (66)
Q Consensus 28 ~C~~~~f~C~~~g~Ci~~~~~CDg~~dC~dgsDE~~C~ 65 (66)
.|. ..|+|.+ |+||+..|+|||..||.|+|||.+|.
T Consensus 118 ~C~-~~F~C~~-g~ci~~~~~c~g~~dC~d~sde~~C~ 153 (913)
T 3t5o_A 118 DCK-NKFRCDS-GRCIARKLECNGENDCGDNSDERDCG 153 (913)
T ss_dssp CCS-SEEECTT-SCEEEGGGSSSSSCCSSSSGGGTTCS
T ss_pred Ccc-cccccCC-CceEccceecCCcccCCCccccccCC
Confidence 353 6799998 99999999999999999999999986
No 28
>2xrc_A Human complement factor I; immune system, hydrolase, conglutinogen activating factor, S protease, complement system; HET: NAG; 2.69A {Homo sapiens}
Probab=98.54 E-value=3.7e-08 Score=68.95 Aligned_cols=37 Identities=30% Similarity=0.675 Sum_probs=29.2
Q ss_pred CCCCC-ceeeCCCCceecCCcCCCCCCCCCCCCCCCCCC
Q psy6537 28 SCAWS-EFSCHDRLQCVPLSARCNGVSDCRDYSDEVNCG 65 (66)
Q Consensus 28 ~C~~~-~f~C~~~g~Ci~~~~~CDg~~dC~dgsDE~~C~ 65 (66)
.|+.. +|+|.+ +.||+..++|||+.||.|+|||.+|.
T Consensus 202 ~c~~~~~~~C~~-~~ci~~~~~Cdg~~dC~d~sDE~~C~ 239 (565)
T 2xrc_A 202 DSPMDDFFQCVN-GKYISQMKACDGINDCGDQSDELCCK 239 (565)
T ss_dssp -------CBCTT-SCBCCTTSTTSSSCCSSSSSSSSSBS
T ss_pred CCCCcCeeECCC-CCccCHHHcCCCcccCCCCccccccc
Confidence 44444 599998 99999999999999999999999884
No 29
>2xrc_A Human complement factor I; immune system, hydrolase, conglutinogen activating factor, S protease, complement system; HET: NAG; 2.69A {Homo sapiens}
Probab=98.50 E-value=1.2e-07 Score=66.37 Aligned_cols=58 Identities=28% Similarity=0.592 Sum_probs=44.6
Q ss_pred cEEecCCCcccCCCCCCCCCCCCCCCCCCCceeeCCCCceecCCcCCCCCCCCCCCCCCCCCC
Q psy6537 3 YIRLCLGCATSYVPPVTTPAYYPTVSCAWSEFSCHDRLQCVPLSARCNGVSDCRDYSDEVNCG 65 (66)
Q Consensus 3 ~~~~~~g~~~~~~~~~~~~~~~~~~~C~~~~f~C~~~g~Ci~~~~~CDg~~dC~dgsDE~~C~ 65 (66)
..++|+|.... +..+++..+.. |+..+|+|.+ +.||+..++|||..||.|++||.+|.
T Consensus 219 ~~~~Cdg~~dC--~d~sDE~~C~~--c~~~~~~C~~-~~C~~~~~~cdG~~dC~~gsDE~~C~ 276 (565)
T 2xrc_A 219 QMKACDGINDC--GDQSDELCCKA--CQGKGFHCKS-GVCIPSQYQCNGEVDCITGEDEVGCA 276 (565)
T ss_dssp TTSTTSSSCCS--SSSSSSSSBSS--CSSSCEEETT-TEEECGGGTTSSSCCSSSCTTSSSCC
T ss_pred HHHcCCCcccC--CCCcccccccc--cCCCceecCC-CcccCccccCCCcccCCCCccccCcC
Confidence 34567776653 33344433222 8888999998 89999999999999999999999885
No 30
>1hvw_A Omega-ACTX-HV1A, omega-atracotoxin-HV1A; cystine knot, beta-hairpin; NMR {Synthetic} SCOP: g.3.6.2
Probab=36.50 E-value=22 Score=15.00 Aligned_cols=19 Identities=32% Similarity=0.892 Sum_probs=10.5
Q ss_pred CCCCCceeeCCCCceecCCcCCC
Q psy6537 28 SCAWSEFSCHDRLQCVPLSARCN 50 (66)
Q Consensus 28 ~C~~~~f~C~~~g~Ci~~~~~CD 50 (66)
.|+.++. |-+ |.|.+. +||
T Consensus 7 ~Cp~~e~-CCS-GsCt~~--~cd 25 (26)
T 1hvw_A 7 PCPYNEN-CCS-QSCTGG--RCD 25 (26)
T ss_dssp BCSSTTS-BSS-CCEETT--EEC
T ss_pred cCCCCcc-ccc-cccccc--ccC
Confidence 4555443 334 678763 555
No 31
>1i8x_A Granulin-1; two beta-hairpin stack, cytokine; NMR {Synthetic} SCOP: g.3.16.1 PDB: 1qgm_A 1i8y_A
Probab=29.01 E-value=25 Score=15.30 Aligned_cols=12 Identities=25% Similarity=0.706 Sum_probs=8.7
Q ss_pred CCCCCCCCCCCC
Q psy6537 48 RCNGVSDCRDYS 59 (66)
Q Consensus 48 ~CDg~~dC~dgs 59 (66)
+||....|+|++
T Consensus 3 ~CD~~~~CP~~~ 14 (30)
T 1i8x_A 3 HCDAATICPDGT 14 (30)
T ss_dssp CTTTTCCCCTTE
T ss_pred cCCCCccCCCCC
Confidence 577777787764
Done!