RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy6537
(66 letters)
>d1cr8a_ g.12.1.1 (A:) Ligand-binding domain of low-density
lipoprotein receptor {Human (Homo sapiens) [TaxId:
9606]}
Length = 42
Score = 43.3 bits (102), Expect = 1e-08
Identities = 17/37 (45%), Positives = 21/37 (56%)
Query: 28 SCAWSEFSCHDRLQCVPLSARCNGVSDCRDYSDEVNC 64
C EF C C+PL RC+G +DC D SDE +C
Sbjct: 3 GCHTDEFQCRLDGLCIPLRWRCDGDTDCMDSSDEKSC 39
>d1f5ya2 g.12.1.1 (A:45-85) Ligand-binding domain of low-density
lipoprotein receptor {Human (Homo sapiens) [TaxId:
9606]}
Length = 41
Score = 42.1 bits (99), Expect = 5e-08
Identities = 17/40 (42%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 26 TVSCAWSEFSCHDRL-QCVPLSARCNGVSDCRDYSDEVNC 64
+V+C +FSC R+ +C+P RC+G DC + SDE C
Sbjct: 2 SVTCKSGDFSCGGRVNRCIPQFWRCDGQVDCDNGSDEQGC 41
>d2fcwb1 g.12.1.1 (B:86-124) Ligand-binding domain of low-density
lipoprotein receptor {Human (Homo sapiens) [TaxId:
9606]}
Length = 39
Score = 41.2 bits (97), Expect = 1e-07
Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 28 SCAWSEFSCHDRLQCVPLSARCNGVSDCRDYSDEVNC 64
+C+ +EF CHD +C+ C+ DC D SDE +C
Sbjct: 2 TCSQAEFRCHDG-KCISRQFVCDSDRDCLDGSDEASC 37
>d1f8za_ g.12.1.1 (A:) Ligand-binding domain of low-density
lipoprotein receptor {Human (Homo sapiens) [TaxId:
9606]}
Length = 39
Score = 41.2 bits (97), Expect = 1e-07
Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 28 SCAWSEFSCHDRLQCVPLSARCNGVSDCRDYSDEVNC 64
+C EF C D C+ S +C+ DC+D SDEV C
Sbjct: 2 TCRPDEFQCSDG-NCIHGSRQCDREYDCKDMSDEVGC 37
>d1k7ba_ g.12.1.1 (A:) soluble Tva ectodomain, sTva47 {Quail
(Coturnix coturnix) [TaxId: 9091]}
Length = 42
Score = 41.0 bits (96), Expect = 1e-07
Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 4/42 (9%)
Query: 28 SCAWSEFSCHDRL----QCVPLSARCNGVSDCRDYSDEVNCG 65
SC +F C + +C P C+G DC D DE CG
Sbjct: 1 SCPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDEWGCG 42
>d1v9u5_ g.12.1.1 (5:) Very low-density lipoprotein receptor
{Human (Homo sapiens) [TaxId: 9606]}
Length = 39
Score = 40.6 bits (95), Expect = 2e-07
Identities = 18/38 (47%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 29 CAWSEFSCHDR-LQCVPLSARCNGVSDCRDYSDEVNCG 65
C E SC QC+P+S RC+G +DC DE NCG
Sbjct: 1 CRIHEISCGAHSTQCIPVSWRCDGENDCDSGEDEENCG 38
>d1j8ea_ g.12.1.1 (A:) Ligand-binding domain of low-density
lipoprotein receptor {Human (Homo sapiens) [TaxId:
9606]}
Length = 44
Score = 40.1 bits (94), Expect = 3e-07
Identities = 15/39 (38%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Query: 26 TVSCAWSEFSCHDRLQCVPLSARCNGVSDCRDYSDEVNC 64
+ SC+ ++F C+ +C+P C+G +DC DYSDE +
Sbjct: 2 SHSCSSTQFKCNSG-RCIPEHWTCDGDNDCGDYSDETHA 39
>d1ajja_ g.12.1.1 (A:) Ligand-binding domain of low-density
lipoprotein receptor {Human (Homo sapiens) [TaxId:
9606]}
Length = 37
Score = 38.6 bits (90), Expect = 9e-07
Identities = 17/36 (47%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 29 CAWSEFSCHDRLQCVPLSARCNGVSDCRDYSDEVNC 64
C+ EF C +C+ S RC+G DC+D SDE NC
Sbjct: 2 CSAFEFHCLSG-ECIHSSWRCDGGPDCKDKSDEENC 36
>d1d2la_ g.12.1.1 (A:) Ligand-binding domain of low-density
lipoprotein receptor {Human (Homo sapiens) [TaxId:
9606]}
Length = 45
Score = 38.6 bits (90), Expect = 1e-06
Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Query: 25 PTVSCAWSEFSCHDRLQCVPLSARCNGVSDCRDYSDEVNC 64
C EF+C + +C+ +C+G +DC D SDE
Sbjct: 2 SPPQCQPGEFACANS-RCIQERWKCDGDNDCLDNSDEAPA 40
>d2fcwb2 g.12.1.1 (B:125-163) Ligand-binding domain of low-density
lipoprotein receptor {Human (Homo sapiens) [TaxId:
9606]}
Length = 39
Score = 38.6 bits (90), Expect = 1e-06
Identities = 12/38 (31%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Query: 27 VSCAWSEFSCHDRLQCVPLSARCNGVSDCRDYSDEVNC 64
++C + F C+ C+P C+ DC D SDE
Sbjct: 1 LTCGPASFQCNSS-TCIPQLWACDNDPDCEDGSDEWPQ 37
>d2gtlo2 g.12.1.1 (O:60-100) Extracellular hemoglobin linker l3
subunit {Common earthworm (Lumbricus terrestris)
[TaxId: 6398]}
Length = 41
Score = 38.6 bits (90), Expect = 1e-06
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Query: 28 SCAWSEFSC-HDRLQCVPLSARCNGVSDCRDYSDEVNC 64
SC E C D QC+ C+G +DCR+ DE +C
Sbjct: 2 SCDEHEHQCGGDDPQCISKLFVCDGHNDCRNGEDEKDC 39
>d1f5ya1 g.12.1.1 (A:1-44) Ligand-binding domain of low-density
lipoprotein receptor {Human (Homo sapiens) [TaxId:
9606]}
Length = 44
Score = 38.3 bits (89), Expect = 1e-06
Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 28 SCAWSEFSCHDRLQCVPLSARCNGVSDCRDYSDEVNC 64
C +EF C D +C+ C+G ++C+D SDE
Sbjct: 7 RCERNEFQCQDG-KCISYKWVCDGSAECQDGSDESQE 42
>d1xfea2 g.12.1.1 (A:1-44) Ligand-binding domain of low-density
lipoprotein receptor {Human (Homo sapiens) [TaxId:
9606]}
Length = 44
Score = 34.4 bits (79), Expect = 6e-05
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 26 TVSCAWSEFSCHDRLQCVPLSARCNGVSDCRDYSDEVNC 64
T+ ++F CH +C+ L CN DCRD+SDE
Sbjct: 4 TLCEGPNKFKCHSG-ECITLDKVCNMARDCRDWSDEPIK 41
>d2gtln2 g.12.1.1 (N:61-101) Extracellular hemoglobin linker l2
subunit {Common earthworm (Lumbricus terrestris)
[TaxId: 6398]}
Length = 41
Score = 34.1 bits (78), Expect = 6e-05
Identities = 10/37 (27%), Positives = 14/37 (37%), Gaps = 1/37 (2%)
Query: 29 CAWSEFSCHDRL-QCVPLSARCNGVSDCRDYSDEVNC 64
C F C +C+ C+G DC + DE
Sbjct: 2 CEKRTFQCGGNEQECISDLLVCDGHKDCHNAHDEDPD 38
>d2gtlm2 g.12.1.1 (M:60-101) Hemoglobin linker chain l1 {Common
earthworm (Lumbricus terrestris) [TaxId: 6398]}
Length = 42
Score = 33.7 bits (77), Expect = 8e-05
Identities = 13/37 (35%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Query: 29 CAWSEFSCHDRL-QCVPLSARCNGVSDCRDYSDEVNC 64
C E C + +C+ C+G DCRD SDE
Sbjct: 3 CDEHESECRGDVPECIHDLLFCDGEKDCRDGSDEDPE 39
>d1ab4a_ e.11.1.1 (A:) DNA Gyrase A {Escherichia coli [TaxId: 562]}
Length = 493
Score = 24.2 bits (52), Expect = 1.6
Identities = 7/17 (41%), Positives = 9/17 (52%)
Query: 48 RCNGVSDCRDYSDEVNC 64
R G+S RD SD+
Sbjct: 256 RVEGISALRDESDKDGM 272
>d2aepa1 b.68.1.1 (A:83-469) Influenza neuraminidase {Influenza A
virus, different strains [TaxId: 11320]}
Length = 387
Score = 22.9 bits (49), Expect = 3.4
Identities = 10/24 (41%), Positives = 12/24 (50%), Gaps = 2/24 (8%)
Query: 17 PVTTPAYYPT--VSCAWSEFSCHD 38
+ P + T V AWS SCHD
Sbjct: 80 ELGVPFHLGTKQVCIAWSSSSCHD 103
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.324 0.136 0.484
Gapped
Lambda K H
0.267 0.0639 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 271,537
Number of extensions: 10459
Number of successful extensions: 49
Number of sequences better than 10.0: 1
Number of HSP's gapped: 41
Number of HSP's successfully gapped: 21
Length of query: 66
Length of database: 2,407,596
Length adjustment: 35
Effective length of query: 31
Effective length of database: 1,927,046
Effective search space: 59738426
Effective search space used: 59738426
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 47 (22.1 bits)