Query psy6538
Match_columns 153
No_of_seqs 105 out of 295
Neff 6.6
Searched_HMMs 46136
Date Fri Aug 16 20:34:54 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6538.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/6538hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF01576 Myosin_tail_1: Myosin 100.0 5.4E-31 1.2E-35 243.9 0.0 153 1-153 44-219 (859)
2 KOG0161|consensus 99.9 1.1E-22 2.4E-27 197.8 19.6 152 1-152 1102-1276(1930)
3 PF01576 Myosin_tail_1: Myosin 97.8 6E-06 1.3E-10 77.7 0.0 150 1-150 241-413 (859)
4 KOG0161|consensus 97.5 0.017 3.8E-07 58.6 19.9 141 2-142 1300-1463(1930)
5 PF00038 Filament: Intermediat 96.0 0.56 1.2E-05 38.7 15.2 113 32-151 5-133 (312)
6 TIGR00606 rad50 rad50. This fa 95.0 3.2 6.8E-05 41.3 18.6 35 9-43 866-900 (1311)
7 PF00261 Tropomyosin: Tropomyo 94.3 2.3 5E-05 34.2 18.1 149 3-151 15-213 (237)
8 PF00038 Filament: Intermediat 94.2 2.7 5.9E-05 34.6 21.1 42 110-151 258-299 (312)
9 PF15372 DUF4600: Domain of un 93.4 2.5 5.4E-05 31.5 11.2 92 48-151 11-102 (129)
10 TIGR02169 SMC_prok_A chromosom 93.3 7.9 0.00017 37.1 19.8 9 29-37 334-342 (1164)
11 KOG0971|consensus 93.1 9 0.0002 37.2 16.9 114 27-141 342-488 (1243)
12 PF06428 Sec2p: GDP/GTP exchan 92.9 0.15 3.2E-06 36.3 3.6 34 10-43 1-34 (100)
13 PRK11637 AmiB activator; Provi 91.8 8.2 0.00018 33.6 20.0 36 5-40 56-91 (428)
14 PF05667 DUF812: Protein of un 90.5 14 0.00031 34.0 18.3 54 55-108 404-457 (594)
15 PRK04863 mukB cell division pr 90.4 22 0.00049 36.2 19.9 39 111-149 446-484 (1486)
16 PF07888 CALCOCO1: Calcium bin 90.0 15 0.00033 33.6 19.3 37 115-151 291-327 (546)
17 PF09730 BicD: Microtubule-ass 90.0 8.2 0.00018 36.4 12.6 91 53-144 599-698 (717)
18 PRK04778 septation ring format 89.5 16 0.00035 33.2 17.1 42 2-43 288-329 (569)
19 KOG1029|consensus 89.2 22 0.00047 34.2 16.7 40 111-150 539-578 (1118)
20 COG4942 Membrane-bound metallo 88.8 16 0.00035 32.3 18.8 44 2-45 44-87 (420)
21 KOG0977|consensus 88.5 19 0.00042 32.8 14.9 64 23-86 168-231 (546)
22 KOG0612|consensus 86.6 19 0.00041 35.9 12.9 81 3-83 700-780 (1317)
23 PF09726 Macoilin: Transmembra 86.4 29 0.00063 32.6 20.2 104 5-108 490-607 (697)
24 PRK09039 hypothetical protein; 85.1 23 0.0005 30.2 18.1 93 2-108 59-157 (343)
25 PF05701 WEMBL: Weak chloropla 83.2 35 0.00075 30.8 19.4 38 3-40 179-216 (522)
26 PRK11637 AmiB activator; Provi 83.2 30 0.00065 30.1 19.8 42 3-44 47-88 (428)
27 PF09730 BicD: Microtubule-ass 82.6 45 0.00097 31.6 16.0 99 3-108 265-383 (717)
28 COG1196 Smc Chromosome segrega 82.5 54 0.0012 32.4 19.5 33 116-148 872-904 (1163)
29 PF07926 TPR_MLP1_2: TPR/MLP1/ 82.4 17 0.00037 26.6 18.0 31 112-142 96-126 (132)
30 KOG0612|consensus 81.2 63 0.0014 32.4 16.3 67 3-80 494-560 (1317)
31 TIGR00606 rad50 rad50. This fa 79.4 72 0.0016 32.0 18.2 31 75-105 299-329 (1311)
32 PRK09039 hypothetical protein; 79.2 39 0.00085 28.8 15.8 36 112-147 149-184 (343)
33 PHA02562 46 endonuclease subun 78.7 47 0.001 29.4 16.6 47 25-71 228-274 (562)
34 KOG0996|consensus 77.9 80 0.0017 31.7 17.2 43 63-105 458-500 (1293)
35 PRK02224 chromosome segregatio 77.1 67 0.0014 30.3 20.0 24 21-44 381-404 (880)
36 KOG0946|consensus 76.8 75 0.0016 30.7 13.1 87 4-90 686-778 (970)
37 PF10174 Cast: RIM-binding pro 75.5 78 0.0017 30.3 16.2 113 27-139 482-615 (775)
38 PF05701 WEMBL: Weak chloropla 75.4 62 0.0014 29.2 18.3 100 4-108 35-147 (522)
39 COG1579 Zn-ribbon protein, pos 74.0 48 0.001 27.2 15.8 8 140-147 161-168 (239)
40 PF12325 TMF_TATA_bd: TATA ele 72.5 35 0.00076 24.9 12.1 85 2-98 22-106 (120)
41 PF07926 TPR_MLP1_2: TPR/MLP1/ 72.2 35 0.00076 24.9 15.1 44 109-152 86-129 (132)
42 PHA02562 46 endonuclease subun 70.9 76 0.0016 28.1 11.6 29 77-105 202-230 (562)
43 PF12128 DUF3584: Protein of u 70.6 1.2E+02 0.0026 30.3 20.0 98 4-108 608-705 (1201)
44 COG4026 Uncharacterized protei 68.0 52 0.0011 27.1 8.5 70 28-98 132-201 (290)
45 PF07111 HCR: Alpha helical co 66.9 1.2E+02 0.0026 28.8 19.0 46 63-108 137-182 (739)
46 KOG0933|consensus 66.8 1.4E+02 0.003 29.7 16.4 16 28-43 688-703 (1174)
47 PF00261 Tropomyosin: Tropomyo 65.6 68 0.0015 25.6 18.7 62 90-151 171-234 (237)
48 COG1579 Zn-ribbon protein, pos 62.6 85 0.0019 25.7 16.3 9 91-99 92-100 (239)
49 PF12761 End3: Actin cytoskele 62.6 60 0.0013 25.8 7.8 11 88-98 160-170 (195)
50 PF14916 CCDC92: Coiled-coil d 60.4 22 0.00047 23.0 4.1 32 72-103 5-36 (60)
51 PF08317 Spc7: Spc7 kinetochor 60.3 1E+02 0.0022 25.9 16.3 59 25-83 157-215 (325)
52 PF04849 HAP1_N: HAP1 N-termin 59.8 1.1E+02 0.0024 26.0 15.3 34 116-149 271-304 (306)
53 PF12718 Tropomyosin_1: Tropom 59.7 71 0.0015 23.8 15.1 28 111-138 112-139 (143)
54 PF08826 DMPK_coil: DMPK coile 58.9 46 0.001 21.5 9.5 59 7-72 1-59 (61)
55 COG3883 Uncharacterized protei 58.5 1.1E+02 0.0023 25.5 15.5 51 22-72 43-93 (265)
56 KOG0996|consensus 57.9 2.2E+02 0.0047 28.8 17.9 78 30-108 383-460 (1293)
57 PF03962 Mnd1: Mnd1 family; I 57.5 90 0.002 24.3 10.1 27 59-85 117-143 (188)
58 KOG0933|consensus 57.0 2.1E+02 0.0046 28.5 15.4 74 57-131 785-860 (1174)
59 KOG0980|consensus 56.7 2E+02 0.0044 28.1 15.4 90 5-98 447-536 (980)
60 PF08317 Spc7: Spc7 kinetochor 56.5 1.2E+02 0.0026 25.5 14.2 27 124-150 233-259 (325)
61 COG1382 GimC Prefoldin, chaper 55.6 80 0.0017 23.2 9.1 43 109-151 65-107 (119)
62 PF07851 TMPIT: TMPIT-like pro 54.3 1.4E+02 0.0031 25.6 10.8 69 66-134 14-88 (330)
63 PF07888 CALCOCO1: Calcium bin 53.7 1.8E+02 0.004 26.7 19.0 38 3-40 143-180 (546)
64 PF00769 ERM: Ezrin/radixin/mo 52.9 1.2E+02 0.0027 24.5 13.0 79 4-82 34-126 (246)
65 KOG0977|consensus 52.9 1.9E+02 0.0041 26.6 16.2 23 53-75 86-108 (546)
66 PF07798 DUF1640: Protein of u 51.8 1.1E+02 0.0023 23.4 12.1 26 17-42 44-69 (177)
67 TIGR02680 conserved hypothetic 50.9 2.9E+02 0.0062 28.1 16.4 118 1-133 281-398 (1353)
68 COG1382 GimC Prefoldin, chaper 48.7 1.1E+02 0.0023 22.5 11.5 80 50-141 25-111 (119)
69 PF10174 Cast: RIM-binding pro 48.7 2.5E+02 0.0055 26.9 20.0 67 21-87 333-399 (775)
70 cd00632 Prefoldin_beta Prefold 48.6 89 0.0019 21.7 8.6 40 111-150 60-99 (105)
71 smart00806 AIP3 Actin interact 48.1 2E+02 0.0044 25.6 10.5 81 57-141 153-237 (426)
72 PF12325 TMF_TATA_bd: TATA ele 47.0 1.1E+02 0.0024 22.3 13.5 85 55-147 26-112 (120)
73 PF12128 DUF3584: Protein of u 46.3 3.2E+02 0.0069 27.4 20.0 38 7-44 356-393 (1201)
74 PF09728 Taxilin: Myosin-like 46.2 1.8E+02 0.0039 24.5 19.5 40 112-151 249-288 (309)
75 PF12718 Tropomyosin_1: Tropom 46.2 1.2E+02 0.0026 22.5 13.2 51 97-147 75-127 (143)
76 PLN03188 kinesin-12 family pro 45.9 1.2E+02 0.0026 30.7 8.3 80 18-97 1167-1252(1320)
77 PRK10884 SH3 domain-containing 45.9 1.5E+02 0.0033 23.5 11.5 23 117-139 142-164 (206)
78 PRK10698 phage shock protein P 45.5 1.6E+02 0.0034 23.6 14.3 35 5-39 33-67 (222)
79 PF06705 SF-assemblin: SF-asse 44.7 1.6E+02 0.0035 23.5 19.6 101 5-105 43-145 (247)
80 COG4026 Uncharacterized protei 44.6 1.8E+02 0.0039 24.0 9.2 20 114-133 184-203 (290)
81 PF06548 Kinesin-related: Kine 44.6 1.7E+02 0.0037 26.4 8.4 79 19-97 398-482 (488)
82 PRK10361 DNA recombination pro 43.9 2.5E+02 0.0054 25.4 19.2 40 109-148 135-178 (475)
83 TIGR03545 conserved hypothetic 43.4 2.6E+02 0.0057 25.6 11.7 93 5-105 166-261 (555)
84 KOG0976|consensus 40.9 3.6E+02 0.0079 26.5 16.3 41 3-43 113-153 (1265)
85 KOG4674|consensus 40.2 4.8E+02 0.01 27.7 18.1 37 3-39 59-95 (1822)
86 PF15070 GOLGA2L5: Putative go 39.3 3.2E+02 0.007 25.4 17.5 14 92-105 164-177 (617)
87 PF06156 DUF972: Protein of un 39.2 1.4E+02 0.0031 21.3 6.3 36 116-151 10-45 (107)
88 PF00170 bZIP_1: bZIP transcri 38.9 99 0.0021 19.4 5.9 36 116-151 28-63 (64)
89 PF05557 MAD: Mitotic checkpoi 38.8 31 0.00066 32.2 3.1 42 3-44 385-426 (722)
90 PRK10884 SH3 domain-containing 38.5 2E+02 0.0044 22.8 8.8 23 52-74 93-115 (206)
91 KOG4674|consensus 38.1 5.2E+02 0.011 27.5 18.8 138 4-142 669-833 (1822)
92 PF12329 TMF_DNA_bd: TATA elem 37.9 1.2E+02 0.0026 20.0 8.2 56 89-144 13-70 (74)
93 KOG0976|consensus 37.1 4.2E+02 0.0091 26.1 16.2 115 20-138 44-169 (1265)
94 KOG0964|consensus 36.9 4.5E+02 0.0097 26.4 18.5 50 3-52 307-356 (1200)
95 PF04012 PspA_IM30: PspA/IM30 35.9 2.1E+02 0.0045 22.3 15.3 23 119-141 117-139 (221)
96 PF07352 Phage_Mu_Gam: Bacteri 35.7 1.3E+02 0.0029 22.2 5.6 41 61-101 12-52 (149)
97 PF15070 GOLGA2L5: Putative go 35.0 3.8E+02 0.0082 25.0 18.3 76 3-78 29-106 (617)
98 PF14915 CCDC144C: CCDC144C pr 34.7 2.9E+02 0.0063 23.5 17.5 37 115-151 229-269 (305)
99 PF06705 SF-assemblin: SF-asse 34.5 2.4E+02 0.0052 22.5 18.5 81 3-83 99-181 (247)
100 PF10481 CENP-F_N: Cenp-F N-te 34.0 2.9E+02 0.0063 23.4 12.6 57 92-148 71-129 (307)
101 PRK13169 DNA replication intia 33.7 1.8E+02 0.0039 20.9 6.3 35 117-151 11-45 (110)
102 COG4477 EzrA Negative regulato 33.3 3.9E+02 0.0085 24.7 13.1 42 109-150 449-490 (570)
103 COG1842 PspA Phage shock prote 32.6 2.7E+02 0.0058 22.5 15.5 35 5-39 33-67 (225)
104 KOG0250|consensus 31.8 5.4E+02 0.012 25.8 19.4 21 115-135 409-429 (1074)
105 PF03915 AIP3: Actin interacti 31.7 1E+02 0.0023 27.3 5.1 36 109-144 234-269 (424)
106 KOG0995|consensus 31.2 4.3E+02 0.0094 24.5 16.9 69 18-87 222-290 (581)
107 PF09304 Cortex-I_coil: Cortex 30.1 2.1E+02 0.0046 20.6 13.7 61 21-85 6-66 (107)
108 KOG0250|consensus 29.9 5.8E+02 0.013 25.6 18.2 35 117-151 390-424 (1074)
109 PF10234 Cluap1: Clusterin-ass 29.8 3.3E+02 0.0071 22.7 12.7 87 24-121 120-215 (267)
110 PF05483 SCP-1: Synaptonemal c 29.5 5.1E+02 0.011 24.8 19.1 77 2-85 355-437 (786)
111 KOG0804|consensus 29.4 4.3E+02 0.0094 23.9 11.9 43 30-72 360-402 (493)
112 KOG0971|consensus 28.8 6E+02 0.013 25.4 17.8 33 11-43 263-295 (1243)
113 PRK04778 septation ring format 28.8 4.5E+02 0.0097 23.9 17.7 22 122-143 477-498 (569)
114 PRK14011 prefoldin subunit alp 28.1 2.6E+02 0.0056 20.9 8.7 39 111-149 85-123 (144)
115 PF05700 BCAS2: Breast carcino 27.6 3.1E+02 0.0067 21.7 12.1 22 111-132 193-214 (221)
116 PF05278 PEARLI-4: Arabidopsis 26.9 3.8E+02 0.0082 22.4 11.7 53 31-84 166-218 (269)
117 PF12808 Mto2_bdg: Micro-tubul 26.7 1.7E+02 0.0036 18.3 5.6 18 3-20 4-21 (52)
118 COG1842 PspA Phage shock prote 26.6 3.4E+02 0.0074 21.8 14.7 45 28-72 28-72 (225)
119 KOG3156|consensus 26.6 3.5E+02 0.0076 21.9 7.4 56 18-73 121-195 (220)
120 PF08614 ATG16: Autophagy prot 26.3 3E+02 0.0066 21.1 8.8 42 110-151 126-174 (194)
121 PHA02682 ORF080 virion core pr 26.2 68 0.0015 26.0 2.7 27 60-86 230-256 (280)
122 PF05377 FlaC_arch: Flagella a 25.9 1.8E+02 0.0039 18.4 5.1 36 5-40 2-37 (55)
123 smart00787 Spc7 Spc7 kinetocho 25.5 4.1E+02 0.0089 22.4 16.2 10 58-67 185-194 (312)
124 PF02183 HALZ: Homeobox associ 25.5 1.6E+02 0.0035 17.7 4.3 28 119-146 10-37 (45)
125 KOG0999|consensus 25.4 5.7E+02 0.012 24.0 16.2 80 54-134 615-703 (772)
126 PF03962 Mnd1: Mnd1 family; I 25.3 3.3E+02 0.0071 21.2 10.4 13 5-17 85-97 (188)
127 COG4942 Membrane-bound metallo 25.2 4.9E+02 0.011 23.2 19.3 30 116-145 212-241 (420)
128 PF10481 CENP-F_N: Cenp-F N-te 25.2 4.2E+02 0.0092 22.4 10.3 96 55-151 21-125 (307)
129 PRK13729 conjugal transfer pil 25.1 2E+02 0.0044 26.0 5.8 14 56-69 108-121 (475)
130 PF08614 ATG16: Autophagy prot 25.0 3.2E+02 0.007 21.0 6.7 35 116-150 118-152 (194)
131 PF05622 HOOK: HOOK protein; 24.8 24 0.00053 32.9 0.0 10 76-85 314-323 (713)
132 PF15294 Leu_zip: Leucine zipp 24.8 4.2E+02 0.0091 22.2 10.6 48 22-69 130-177 (278)
133 PF03148 Tektin: Tektin family 24.8 4.5E+02 0.0098 22.6 20.0 138 5-152 210-362 (384)
134 KOG4348|consensus 24.0 5.4E+02 0.012 23.4 8.1 45 16-67 579-623 (627)
135 PF06160 EzrA: Septation ring 23.6 5.6E+02 0.012 23.3 17.8 84 21-108 98-181 (560)
136 COG4985 ABC-type phosphate tra 23.4 4.3E+02 0.0094 21.9 10.6 58 84-142 182-242 (289)
137 PF14197 Cep57_CLD_2: Centroso 23.0 2.3E+02 0.0049 18.5 4.9 19 88-106 5-23 (69)
138 PF05911 DUF869: Plant protein 23.0 6.9E+02 0.015 24.1 17.9 27 122-148 734-760 (769)
139 KOG2991|consensus 22.9 4.7E+02 0.01 22.1 14.3 51 36-86 120-170 (330)
140 KOG2264|consensus 22.8 3.9E+02 0.0085 25.2 7.2 38 110-147 96-133 (907)
141 PF05911 DUF869: Plant protein 22.8 6.9E+02 0.015 24.0 16.3 49 4-52 510-558 (769)
142 PF05622 HOOK: HOOK protein; 22.4 29 0.00063 32.4 0.0 13 89-101 292-304 (713)
143 TIGR02977 phageshock_pspA phag 21.7 4E+02 0.0087 20.9 16.4 36 5-40 33-68 (219)
144 PF04012 PspA_IM30: PspA/IM30 21.4 3.9E+02 0.0085 20.7 15.4 43 88-135 98-140 (221)
145 PF06160 EzrA: Septation ring 21.4 6.2E+02 0.013 23.0 16.4 39 2-40 284-322 (560)
146 smart00787 Spc7 Spc7 kinetocho 21.1 5.1E+02 0.011 21.9 14.1 29 119-147 230-258 (312)
147 PF03915 AIP3: Actin interacti 20.1 6.2E+02 0.013 22.5 10.2 21 116-136 208-228 (424)
No 1
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=99.96 E-value=5.4e-31 Score=243.91 Aligned_cols=153 Identities=66% Similarity=0.861 Sum_probs=0.0
Q ss_pred ChhHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHhcCccHHHHHHhHhHHHHHHHHHHHHHHHHhhhHHHHH
Q psy6538 1 MQARIYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRRDLEEANIQHESTLA 80 (153)
Q Consensus 1 lq~~i~eLeeeLe~Er~~R~k~Ek~r~dl~~eLe~l~~~Lee~~~~t~aq~el~~krE~e~~~Lrr~Lee~~~~~e~~~~ 80 (153)
|+++|.+|+++|++||.+|.|++|+|+||++||++|+++|++++|+|++|++++++||+||.+||++|++.+.+|+.+++
T Consensus 44 lq~~i~el~eeLe~Er~~R~kaek~r~dL~~ELe~l~~~Lee~~~~t~aq~E~~kkrE~El~~Lrr~LEe~~~~~e~~~~ 123 (859)
T PF01576_consen 44 LQARIEELEEELESERQARAKAEKQRRDLSEELEELKERLEEAGGATQAQIELNKKREAELAKLRRDLEEANLQHEATLA 123 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhhHHHHHHHHHHHHhhhhhhHH-----------------------HhhhHHHHHHHHHHHHHHHhHHHHHHHHH
Q psy6538 81 NLRKKHNDAVSEMGEQIDQLNKLKTNKE-----------------------EATTEKVLKQLKHQLNEVQSRLDEANRTI 137 (153)
Q Consensus 81 ~lrkkh~~~v~el~eqie~lqr~k~klE-----------------------k~~~ek~~k~lE~ql~el~~k~ee~~r~~ 137 (153)
.||+||+++|++|+++|++++|+|++++ |+++++.++.+|.+|.+++.++++.++.+
T Consensus 124 ~lrkkh~~~~~eL~eqle~lqk~k~~lEK~k~~l~~e~~dL~~~l~~~~k~k~~~Ek~~K~lE~qL~El~~klee~er~~ 203 (859)
T PF01576_consen 124 ELRKKHQDAVAELNEQLEQLQKQKAKLEKEKSQLEAELDDLQAQLDSLQKAKQEAEKKRKQLEAQLNELQAKLEESERQR 203 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999 99999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhcC
Q psy6538 138 NDLDVARKKLIIETTE 153 (153)
Q Consensus 138 ~el~~~~~rl~~E~~e 153 (153)
++++..+.+|++|+++
T Consensus 204 ~el~~~k~kL~~E~~e 219 (859)
T PF01576_consen 204 NELTEQKAKLQSENSE 219 (859)
T ss_dssp ----------------
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999999864
No 2
>KOG0161|consensus
Probab=99.90 E-value=1.1e-22 Score=197.79 Aligned_cols=152 Identities=57% Similarity=0.766 Sum_probs=149.0
Q ss_pred ChhHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHhcCccHHHHHHhHhHHHHHHHHHHHHHHHHhhhHHHHH
Q psy6538 1 MQARIYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRRDLEEANIQHESTLA 80 (153)
Q Consensus 1 lq~~i~eLeeeLe~Er~~R~k~Ek~r~dl~~eLe~l~~~Lee~~~~t~aq~el~~krE~e~~~Lrr~Lee~~~~~e~~~~ 80 (153)
|+++|.+|.++|+.||..|+|++|+++||..+|++|+.+|++++|+|.+|++++++|+.+|.+|++.|++.+..|+.+++
T Consensus 1102 L~~~i~el~e~le~er~~r~K~ek~r~dL~~ele~l~~~Lee~~~~t~~q~e~~~k~e~e~~~l~~~leee~~~~e~~~~ 1181 (1930)
T KOG0161|consen 1102 LEARIKELEEELEAERASRAKAERQRRDLSEELEELKEELEEQGGTTAAQLELNKKREAEVQKLRRDLEEETLDHEAQIE 1181 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 46889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhhHHHHHHHHHHHHhhhhhhHH-----------------------HhhhHHHHHHHHHHHHHHHhHHHHHHHHH
Q psy6538 81 NLRKKHNDAVSEMGEQIDQLNKLKTNKE-----------------------EATTEKVLKQLKHQLNEVQSRLDEANRTI 137 (153)
Q Consensus 81 ~lrkkh~~~v~el~eqie~lqr~k~klE-----------------------k~~~ek~~k~lE~ql~el~~k~ee~~r~~ 137 (153)
.||++|++++.++.+|++++++.|++++ +.+.++.|+.+|.++++++.+++++++.+
T Consensus 1182 ~lr~~~~~~~~el~~qle~l~~~k~~lekek~~lq~e~~~l~~ev~~~~~~k~~~e~~~k~~E~~l~elq~k~~~~~~~~ 1261 (1930)
T KOG0161|consen 1182 ELRKKHADSLAELQEQLEQLQKDKAKLEKEKSDLQREIADLAAELEQLSSEKKDLEKKDKKLEAQLSELQLKLDEQERLR 1261 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999998 88999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhc
Q psy6538 138 NDLDVARKKLIIETT 152 (153)
Q Consensus 138 ~el~~~~~rl~~E~~ 152 (153)
+++..++.++++|++
T Consensus 1262 ~~l~~q~~~l~~E~~ 1276 (1930)
T KOG0161|consen 1262 NDLTAKRSRLQNENE 1276 (1930)
T ss_pred HHHHHHHHHhhhhHH
Confidence 999999999999986
No 3
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=97.75 E-value=6e-06 Score=77.68 Aligned_cols=150 Identities=27% Similarity=0.364 Sum_probs=0.0
Q ss_pred ChhHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHhcCccHHHHHHhHhHHHHHHHHHHHHHHHHhhhHHHHH
Q psy6538 1 MQARIYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRRDLEEANIQHESTLA 80 (153)
Q Consensus 1 lq~~i~eLeeeLe~Er~~R~k~Ek~r~dl~~eLe~l~~~Lee~~~~t~aq~el~~krE~e~~~Lrr~Lee~~~~~e~~~~ 80 (153)
|.+++.++...|+.|-..+..+....+.+..+++.|.+.|++-.++.....--..+-.+++..|++-++.....+-..+.
T Consensus 241 L~~qLeelk~~leeEtr~k~~L~~~l~~le~e~~~L~eqleeE~e~k~~l~~qlsk~~~El~~~k~K~e~e~~~~~EelE 320 (859)
T PF01576_consen 241 LESQLEELKRQLEEETRAKQALEKQLRQLEHELEQLREQLEEEEEAKSELERQLSKLNAELEQWKKKYEEEAEQRTEELE 320 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHhhHHHHHhHhhhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhhhHHHHH
Confidence 45788999999999999999999999999999999999999776555554455567889999999999999988888899
Q ss_pred HHHhhhhhHHHHHHHHHHHHhhhhhhHH-----------------------HhhhHHHHHHHHHHHHHHHhHHHHHHHHH
Q psy6538 81 NLRKKHNDAVSEMGEQIDQLNKLKTNKE-----------------------EATTEKVLKQLKHQLNEVQSRLDEANRTI 137 (153)
Q Consensus 81 ~lrkkh~~~v~el~eqie~lqr~k~klE-----------------------k~~~ek~~k~lE~ql~el~~k~ee~~r~~ 137 (153)
..|++-...+.++.++++.+.....+|+ ...++|+.++|+.++.+++.++++....+
T Consensus 321 eaKKkL~~~L~el~e~le~~~~~~~~LeK~k~rL~~EleDl~~eLe~~~~~~~~LeKKqr~fDk~l~e~k~~~~~~~~e~ 400 (859)
T PF01576_consen 321 EAKKKLERKLQELQEQLEEANAKVSSLEKTKKRLQGELEDLTSELEKAQAAAAELEKKQRKFDKQLAEWKAKVEELQAER 400 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 9999998888888888887776666666 55778889999999999999988777666
Q ss_pred HHHHHHHHHHHhh
Q psy6538 138 NDLDVARKKLIIE 150 (153)
Q Consensus 138 ~el~~~~~rl~~E 150 (153)
..+......+.++
T Consensus 401 d~~q~e~r~~~te 413 (859)
T PF01576_consen 401 DAAQREARELETE 413 (859)
T ss_dssp -------------
T ss_pred HHHHHHhHHHHHH
Confidence 6555544444443
No 4
>KOG0161|consensus
Probab=97.50 E-value=0.017 Score=58.56 Aligned_cols=141 Identities=26% Similarity=0.362 Sum_probs=118.2
Q ss_pred hhHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHhcCccHHHHHHhHhHHHHHHHHHHHHHHHHhhhHHHHHH
Q psy6538 2 QARIYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRRDLEEANIQHESTLAN 81 (153)
Q Consensus 2 q~~i~eLeeeLe~Er~~R~k~Ek~r~dl~~eLe~l~~~Lee~~~~t~aq~el~~krE~e~~~Lrr~Lee~~~~~e~~~~~ 81 (153)
..+|+++.+.++.|-..+.....+-+-+..+++.|..++++..+.-.-..---++--+++..+++.+++....+=..+..
T Consensus 1300 ~~qle~~k~qle~e~r~k~~l~~~l~~l~~e~~~l~e~leee~e~~~~l~r~lsk~~~e~~~~~~k~e~~~~~~~eelee 1379 (1930)
T KOG0161|consen 1300 ESQLEELKRQLEEETREKSALENALRQLEHELDLLREQLEEEQEAKNELERKLSKANAELAQWKKKFEEEVLQRLEELEE 1379 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46899999999999999999999999999999999999999987777666666778899999999999999998888999
Q ss_pred HHhhhhhHHHHHHHHHHHHhhhhhhHH-----------------------HhhhHHHHHHHHHHHHHHHhHHHHHHHHHH
Q psy6538 82 LRKKHNDAVSEMGEQIDQLNKLKTNKE-----------------------EATTEKVLKQLKHQLNEVQSRLDEANRTIN 138 (153)
Q Consensus 82 lrkkh~~~v~el~eqie~lqr~k~klE-----------------------k~~~ek~~k~lE~ql~el~~k~ee~~r~~~ 138 (153)
.+++.+..+.++.++++.+.-.-.++| -..++++.++++..+.+++.+.+++...+.
T Consensus 1380 ~kk~l~~~lq~~qe~~e~~~~~~~~Lek~k~~l~~el~d~~~d~~~~~~~~~~le~k~k~f~k~l~e~k~~~e~l~~Eld 1459 (1930)
T KOG0161|consen 1380 LKKKLQQRLQELEEQIEAANAKNASLEKAKNRLQQELEDLQLDLERSRAAVAALEKKQKRFEKLLAEWKKKLEKLQAELD 1459 (1930)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998887776666665 245677788888888888888877766555
Q ss_pred HHHH
Q psy6538 139 DLDV 142 (153)
Q Consensus 139 el~~ 142 (153)
....
T Consensus 1460 ~aq~ 1463 (1930)
T KOG0161|consen 1460 AAQR 1463 (1930)
T ss_pred HHHH
Confidence 4433
No 5
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=96.05 E-value=0.56 Score=38.71 Aligned_cols=113 Identities=25% Similarity=0.314 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHhcCccHHHHHHhHhHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhhHHHHHHHHHHHHhhhhhhHH---
Q psy6538 32 ELEELGERLEEAGGATSAQIELNKKREAEMSKLRRDLEEANIQHESTLANLRKKHNDAVSEMGEQIDQLNKLKTNKE--- 108 (153)
Q Consensus 32 eLe~l~~~Lee~~~~t~aq~el~~krE~e~~~Lrr~Lee~~~~~e~~~~~lrkkh~~~v~el~eqie~lqr~k~klE--- 108 (153)
+|..|+++|-.-.+.+-+- |++-..|...+..........++.++..+...+.++..+|+.+..-+++++
T Consensus 5 eL~~LNdRla~YIekVr~L-------E~~N~~Le~~i~~~~~~~~~~~~~~~~~ye~el~~lr~~id~~~~eka~l~~e~ 77 (312)
T PF00038_consen 5 ELQSLNDRLASYIEKVRFL-------EQENKRLESEIEELREKKGEEVSRIKEMYEEELRELRRQIDDLSKEKARLELEI 77 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH---------HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH-------HHHhhhhHHHHHHHHhcccccCcccccchhhHHHHhHHhhhhHHHHhhHHhhhh
Confidence 4555566653333333332 333333333333333333344445555555555555566665555555444
Q ss_pred ------------H-hhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhh
Q psy6538 109 ------------E-ATTEKVLKQLKHQLNEVQSRLDEANRTINDLDVARKKLIIET 151 (153)
Q Consensus 109 ------------k-~~~ek~~k~lE~ql~el~~k~ee~~r~~~el~~~~~rl~~E~ 151 (153)
+ -..-..+..++..+..+..-+++......++......|..|+
T Consensus 78 ~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~eEl 133 (312)
T PF00038_consen 78 DNLKEELEDLRRKYEEELAERKDLEEELESLRKDLDEETLARVDLENQIQSLKEEL 133 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHHH
Confidence 1 122345667788888888888888888888888877777664
No 6
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.04 E-value=3.2 Score=41.29 Aligned_cols=35 Identities=17% Similarity=0.304 Sum_probs=19.9
Q ss_pred HHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHh
Q psy6538 9 EEEVEVERQSRAKAEKQRADLARELEELGERLEEA 43 (153)
Q Consensus 9 eeeLe~Er~~R~k~Ek~r~dl~~eLe~l~~~Lee~ 43 (153)
..++..++......-..+.++..+|++|...+...
T Consensus 866 i~el~~~klkl~~~l~~r~~le~~L~el~~el~~l 900 (1311)
T TIGR00606 866 TNELKSEKLQIGTNLQRRQQFEEQLVELSTEVQSL 900 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555556666666666666666433
No 7
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=94.30 E-value=2.3 Score=34.23 Aligned_cols=149 Identities=26% Similarity=0.378 Sum_probs=91.3
Q ss_pred hHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHhc---CccHHHHHHhHhHHHHHHHHHHHHHHHHhhhHHHH
Q psy6538 3 ARIYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAG---GATSAQIELNKKREAEMSKLRRDLEEANIQHESTL 79 (153)
Q Consensus 3 ~~i~eLeeeLe~Er~~R~k~Ek~r~dl~~eLe~l~~~Lee~~---~~t~aq~el~~krE~e~~~Lrr~Lee~~~~~e~~~ 79 (153)
.++..++..|......+.+++..-..|.+-+..|-+.|+-+. ..+....+--.++-.+...-++.|+......+..+
T Consensus 15 ~~~~~~~~~l~~~~~~~~~aE~e~~~l~rri~~lE~~le~~eerL~~~~~kL~~~e~~~de~er~~k~lE~r~~~~eeri 94 (237)
T PF00261_consen 15 ERLEEAEEKLKEAEKRAEKAEAEVASLQRRIQLLEEELERAEERLEEATEKLEEAEKRADESERARKVLENREQSDEERI 94 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 356667777777777777777777777777776665554443 33344444444555555566666666666665555
Q ss_pred HHHHhhhh--------------------------------------hHHHHHHHHHHHHhhhhhhHH---------Hhhh
Q psy6538 80 ANLRKKHN--------------------------------------DAVSEMGEQIDQLNKLKTNKE---------EATT 112 (153)
Q Consensus 80 ~~lrkkh~--------------------------------------~~v~el~eqie~lqr~k~klE---------k~~~ 112 (153)
..|-.... ..+.+|.+.|..+...-..++ .-.+
T Consensus 95 ~~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk~lE~~~~~~~~re~~~ 174 (237)
T PF00261_consen 95 EELEQQLKEAKRRAEEAERKYEEVERKLKVLEQELERAEERAEAAESKIKELEEELKSVGNNLKSLEASEEKASEREDEY 174 (237)
T ss_dssp HHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHH
Confidence 55444332 112222222222221111122 3567
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhh
Q psy6538 113 EKVLKQLKHQLNEVQSRLDEANRTINDLDVARKKLIIET 151 (153)
Q Consensus 113 ek~~k~lE~ql~el~~k~ee~~r~~~el~~~~~rl~~E~ 151 (153)
+..++.|..+|.++..+++...+.+..|...+.+|..++
T Consensus 175 e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL 213 (237)
T PF00261_consen 175 EEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDEL 213 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 778888999999999999999999998888888887765
No 8
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=94.18 E-value=2.7 Score=34.62 Aligned_cols=42 Identities=17% Similarity=0.215 Sum_probs=27.0
Q ss_pred hhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhh
Q psy6538 110 ATTEKVLKQLKHQLNEVQSRLDEANRTINDLDVARKKLIIET 151 (153)
Q Consensus 110 ~~~ek~~k~lE~ql~el~~k~ee~~r~~~el~~~~~rl~~E~ 151 (153)
..+...+..++.++..++..+....+.+.+|-..+-.|..|+
T Consensus 258 ~~~~~~i~~le~el~~l~~~~~~~~~ey~~Ll~~K~~Ld~EI 299 (312)
T PF00038_consen 258 EEYQAEIAELEEELAELREEMARQLREYQELLDVKLALDAEI 299 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 344555666666666666666666666677766666666654
No 9
>PF15372 DUF4600: Domain of unknown function (DUF4600)
Probab=93.36 E-value=2.5 Score=31.47 Aligned_cols=92 Identities=23% Similarity=0.403 Sum_probs=67.6
Q ss_pred HHHHHHhHhHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhhHHHHHHHHHHHHhhhhhhHHHhhhHHHHHHHHHHHHHHH
Q psy6538 48 SAQIELNKKREAEMSKLRRDLEEANIQHESTLANLRKKHNDAVSEMGEQIDQLNKLKTNKEEATTEKVLKQLKHQLNEVQ 127 (153)
Q Consensus 48 ~aq~el~~krE~e~~~Lrr~Lee~~~~~e~~~~~lrkkh~~~v~el~eqie~lqr~k~klEk~~~ek~~k~lE~ql~el~ 127 (153)
-+|.|+|...|..+.-|+..++.+....-.-.+..|.--.-++..|..-|.+|. +-.+.|+.|+.+..
T Consensus 11 EtQ~E~N~QLekqi~~l~~kiek~r~n~~drl~siR~ye~Ms~~~l~~llkqLE------------keK~~Le~qlk~~e 78 (129)
T PF15372_consen 11 ETQLELNDQLEKQIIILREKIEKIRGNPSDRLSSIRRYEQMSVESLNQLLKQLE------------KEKRSLENQLKDYE 78 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCccccHHHHHHhhccHHHHHHHHHHHH------------HHHHHHHHHHHHHH
Confidence 478999999999999999999999988877777777655556666666666444 44455777777777
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhh
Q psy6538 128 SRLDEANRTINDLDVARKKLIIET 151 (153)
Q Consensus 128 ~k~ee~~r~~~el~~~~~rl~~E~ 151 (153)
-+++.-.+.+...+.-.....+|+
T Consensus 79 ~rLeQEsKAyhk~ndeRr~ylaEi 102 (129)
T PF15372_consen 79 WRLEQESKAYHKANDERRQYLAEI 102 (129)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHH
Confidence 777777777766666666555554
No 10
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=93.30 E-value=7.9 Score=37.06 Aligned_cols=9 Identities=56% Similarity=0.704 Sum_probs=3.2
Q ss_pred HHHHHHHHH
Q psy6538 29 LARELEELG 37 (153)
Q Consensus 29 l~~eLe~l~ 37 (153)
+..+++.+.
T Consensus 334 l~~~~~~l~ 342 (1164)
T TIGR02169 334 LLAEIEELE 342 (1164)
T ss_pred HHHHHHHHH
Confidence 333333333
No 11
>KOG0971|consensus
Probab=93.10 E-value=9 Score=37.16 Aligned_cols=114 Identities=22% Similarity=0.357 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHHHHHHhcCccHHHHHH--------hHhHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhh-----------
Q psy6538 27 ADLARELEELGERLEEAGGATSAQIEL--------NKKREAEMSKLRRDLEEANIQHESTLANLRKKHN----------- 87 (153)
Q Consensus 27 ~dl~~eLe~l~~~Lee~~~~t~aq~el--------~~krE~e~~~Lrr~Lee~~~~~e~~~~~lrkkh~----------- 87 (153)
.+|+-+|+-|+.++++.||..+++.-. |.+.-.-+.+||--.......|-.+.-.|-+||+
T Consensus 342 deletdlEILKaEmeekG~~~~~~ss~qfkqlEqqN~rLKdalVrLRDlsA~ek~d~qK~~kelE~k~sE~~eL~r~kE~ 421 (1243)
T KOG0971|consen 342 DELETDLEILKAEMEEKGSDGQAASSYQFKQLEQQNARLKDALVRLRDLSASEKQDHQKLQKELEKKNSELEELRRQKER 421 (1243)
T ss_pred HHHHHHHHHHHHHHHhcCCCCcccchHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 468889999999999999877553322 2332333445554455555555555555555554
Q ss_pred ---------hHHHHHHHHHHHHhhhhhhHH-----HhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy6538 88 ---------DAVSEMGEQIDQLNKLKTNKE-----EATTEKVLKQLKHQLNEVQSRLDEANRTINDLD 141 (153)
Q Consensus 88 ---------~~v~el~eqie~lqr~k~klE-----k~~~ek~~k~lE~ql~el~~k~ee~~r~~~el~ 141 (153)
..|.+|.+|||..=-+..-++ +.++|-+++.||..+.++.+ +++++.++.+.+
T Consensus 422 Lsr~~d~aEs~iadlkEQVDAAlGAE~MV~qLtdknlnlEekVklLeetv~dlEa-lee~~EQL~Esn 488 (1243)
T KOG0971|consen 422 LSRELDQAESTIADLKEQVDAALGAEEMVEQLTDKNLNLEEKVKLLEETVGDLEA-LEEMNEQLQESN 488 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHhhccCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 234444455544333333333 78888888888888877654 344444444433
No 12
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=92.87 E-value=0.15 Score=36.32 Aligned_cols=34 Identities=41% Similarity=0.595 Sum_probs=30.3
Q ss_pred HHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHh
Q psy6538 10 EEVEVERQSRAKAEKQRADLARELEELGERLEEA 43 (153)
Q Consensus 10 eeLe~Er~~R~k~Ek~r~dl~~eLe~l~~~Lee~ 43 (153)
++|..|+..|..++..+..+..||++|+..|++.
T Consensus 1 ~~l~~e~~~r~~ae~~~~~ie~ElEeLTasLFeE 34 (100)
T PF06428_consen 1 KELEEERERREEAEQEKEQIESELEELTASLFEE 34 (100)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3678899999999999999999999999999654
No 13
>PRK11637 AmiB activator; Provisional
Probab=91.75 E-value=8.2 Score=33.56 Aligned_cols=36 Identities=22% Similarity=0.245 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHH
Q psy6538 5 IYELEEEVEVERQSRAKAEKQRADLARELEELGERL 40 (153)
Q Consensus 5 i~eLeeeLe~Er~~R~k~Ek~r~dl~~eLe~l~~~L 40 (153)
|..++.++..-......++.+..++..+|..+...|
T Consensus 56 i~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i 91 (428)
T PRK11637 56 IAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKL 91 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333344444444444444444444
No 14
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=90.50 E-value=14 Score=34.02 Aligned_cols=54 Identities=15% Similarity=0.281 Sum_probs=41.2
Q ss_pred HhHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhhHHHHHHHHHHHHhhhhhhHH
Q psy6538 55 KKREAEMSKLRRDLEEANIQHESTLANLRKKHNDAVSEMGEQIDQLNKLKTNKE 108 (153)
Q Consensus 55 ~krE~e~~~Lrr~Lee~~~~~e~~~~~lrkkh~~~v~el~eqie~lqr~k~klE 108 (153)
-....-+..|..+++....-....+..|+..+.....+....++.++.++.+..
T Consensus 404 ~~s~~rl~~L~~qWe~~R~pL~~e~r~lk~~~~~~~~e~~~~~~~ik~~r~~~k 457 (594)
T PF05667_consen 404 EASEQRLVELAQQWEKHRAPLIEEYRRLKEKASNRESESKQKLQEIKELREEIK 457 (594)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHH
Confidence 335566777888888888888888888888888777777777777777666555
No 15
>PRK04863 mukB cell division protein MukB; Provisional
Probab=90.44 E-value=22 Score=36.22 Aligned_cols=39 Identities=10% Similarity=0.106 Sum_probs=17.5
Q ss_pred hhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh
Q psy6538 111 TTEKVLKQLKHQLNEVQSRLDEANRTINDLDVARKKLII 149 (153)
Q Consensus 111 ~~ek~~k~lE~ql~el~~k~ee~~r~~~el~~~~~rl~~ 149 (153)
++.......+.++.++..++.+....+..+....+.+..
T Consensus 446 nF~aklee~e~qL~elE~kL~~lea~leql~~~~~~l~~ 484 (1486)
T PRK04863 446 EFQAKEQEATEELLSLEQKLSVAQAAHSQFEQAYQLVRK 484 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444444444433
No 16
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=90.00 E-value=15 Score=33.55 Aligned_cols=37 Identities=19% Similarity=0.263 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhh
Q psy6538 115 VLKQLKHQLNEVQSRLDEANRTINDLDVARKKLIIET 151 (153)
Q Consensus 115 ~~k~lE~ql~el~~k~ee~~r~~~el~~~~~rl~~E~ 151 (153)
..+.++.++...+.++.-+...+.++.+...+..+++
T Consensus 291 qLr~~qe~lqaSqq~~~~L~~EL~~~~~~RDrt~aeL 327 (546)
T PF07888_consen 291 QLRSAQEQLQASQQEAELLRKELSDAVNVRDRTMAEL 327 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666666666666666666665553
No 17
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=89.97 E-value=8.2 Score=36.36 Aligned_cols=91 Identities=25% Similarity=0.285 Sum_probs=64.3
Q ss_pred HhHhHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhhHHHHHHHHHHHHhhhhhhHH---------HhhhHHHHHHHHHHH
Q psy6538 53 LNKKREAEMSKLRRDLEEANIQHESTLANLRKKHNDAVSEMGEQIDQLNKLKTNKE---------EATTEKVLKQLKHQL 123 (153)
Q Consensus 53 l~~krE~e~~~Lrr~Lee~~~~~e~~~~~lrkkh~~~v~el~eqie~lqr~k~klE---------k~~~ek~~k~lE~ql 123 (153)
|.+|||+ ++.||-.|-.=...-|.++++||.|+-..=.-.++.+..|..--..|. ++.+-.+|--+-.||
T Consensus 599 LSTKREQ-IaTLRTVLKANKqTAEvALanLKsKYE~EK~~v~etm~kLRnELK~LKEDAATFsSlRamFa~RCdEYvtQl 677 (717)
T PF09730_consen 599 LSTKREQ-IATLRTVLKANKQTAEVALANLKSKYENEKAMVSETMMKLRNELKALKEDAATFSSLRAMFAARCDEYVTQL 677 (717)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567776 899999999999999999999999996544444555544432211121 778888888888888
Q ss_pred HHHHhHHHHHHHHHHHHHHHH
Q psy6538 124 NEVQSRLDEANRTINDLDVAR 144 (153)
Q Consensus 124 ~el~~k~ee~~r~~~el~~~~ 144 (153)
.+++.++.-.+...-.|++-+
T Consensus 678 demqrqL~aAEdEKKTLNsLL 698 (717)
T PF09730_consen 678 DEMQRQLAAAEDEKKTLNSLL 698 (717)
T ss_pred HHHHHHHHHhHHHHHHHHHHH
Confidence 888887766666555555443
No 18
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=89.50 E-value=16 Score=33.15 Aligned_cols=42 Identities=33% Similarity=0.319 Sum_probs=36.6
Q ss_pred hhHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHh
Q psy6538 2 QARIYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEA 43 (153)
Q Consensus 2 q~~i~eLeeeLe~Er~~R~k~Ek~r~dl~~eLe~l~~~Lee~ 43 (153)
..+|..|-+.|+.|-.++..+++....+...|..+.......
T Consensus 288 ~~~Id~Lyd~lekE~~A~~~vek~~~~l~~~l~~~~e~~~~l 329 (569)
T PRK04778 288 QERIDQLYDILEREVKARKYVEKNSDTLPDFLEHAKEQNKEL 329 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 467899999999999999999999999999988888876544
No 19
>KOG1029|consensus
Probab=89.18 E-value=22 Score=34.20 Aligned_cols=40 Identities=20% Similarity=0.268 Sum_probs=24.3
Q ss_pred hhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhh
Q psy6538 111 TTEKVLKQLKHQLNEVQSRLDEANRTINDLDVARKKLIIE 150 (153)
Q Consensus 111 ~~ek~~k~lE~ql~el~~k~ee~~r~~~el~~~~~rl~~E 150 (153)
.-+-.|+.+.+++-++....+-.-..++.++.++..|...
T Consensus 539 ~ke~irq~ikdqldelskE~esk~~eidi~n~qlkelk~~ 578 (1118)
T KOG1029|consen 539 KKELIRQAIKDQLDELSKETESKLNEIDIFNNQLKELKED 578 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 3344577777777776665555555555566666655544
No 20
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=88.77 E-value=16 Score=32.27 Aligned_cols=44 Identities=34% Similarity=0.441 Sum_probs=33.1
Q ss_pred hhHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHhcC
Q psy6538 2 QARIYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGG 45 (153)
Q Consensus 2 q~~i~eLeeeLe~Er~~R~k~Ek~r~dl~~eLe~l~~~Lee~~~ 45 (153)
+..|..++..+..-+..+.+.+++..++..++..+..+|-++.+
T Consensus 44 q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~ 87 (420)
T COG4942 44 QKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETAD 87 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34577777777777788888888888888888888887755543
No 21
>KOG0977|consensus
Probab=88.52 E-value=19 Score=32.85 Aligned_cols=64 Identities=20% Similarity=0.203 Sum_probs=29.8
Q ss_pred HHhHHHHHHHHHHHHHHHHHhcCccHHHHHHhHhHHHHHHHHHHHHHHHHhhhHHHHHHHHhhh
Q psy6538 23 EKQRADLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRRDLEEANIQHESTLANLRKKH 86 (153)
Q Consensus 23 Ek~r~dl~~eLe~l~~~Lee~~~~t~aq~el~~krE~e~~~Lrr~Lee~~~~~e~~~~~lrkkh 86 (153)
+-...+|-.+..-|...|..+......-.-++...+..+..|..+|.-....|+..|..++.++
T Consensus 168 e~e~~~Lk~en~rl~~~l~~~r~~ld~Etllr~d~~n~~q~Lleel~f~~~~h~~eI~e~~~~~ 231 (546)
T KOG0977|consen 168 EDELKRLKAENSRLREELARARKQLDDETLLRVDLQNRVQTLLEELAFLKRIHKQEIEEERRKA 231 (546)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 3333344444444444444443333333333444444555555555555555555555555554
No 22
>KOG0612|consensus
Probab=86.63 E-value=19 Score=35.94 Aligned_cols=81 Identities=23% Similarity=0.268 Sum_probs=58.6
Q ss_pred hHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHhcCccHHHHHHhHhHHHHHHHHHHHHHHHHhhhHHHHHHH
Q psy6538 3 ARIYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRRDLEEANIQHESTLANL 82 (153)
Q Consensus 3 ~~i~eLeeeLe~Er~~R~k~Ek~r~dl~~eLe~l~~~Lee~~~~t~aq~el~~krE~e~~~Lrr~Lee~~~~~e~~~~~l 82 (153)
.++.++.--|..||.+|.+++--...+..+++-|+..+--+...-.-+-.....-..++.+|...|+......=.....|
T Consensus 700 ~~~~e~~~~lseek~ar~k~e~~~~~i~~e~e~L~~d~~~~~~~~~~l~r~~~~~~~~vl~Lq~~LEqe~~~r~~~~~eL 779 (1317)
T KOG0612|consen 700 AQMKEIESKLSEEKSAREKAENLLLEIEAELEYLSNDYKQSQEKLNELRRSKDQLITEVLKLQSMLEQEISKRLSLQREL 779 (1317)
T ss_pred HHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHhhhhhhhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHh
Confidence 46788888999999999999999999999999999877555433222323333455677778888887775555555555
Q ss_pred H
Q psy6538 83 R 83 (153)
Q Consensus 83 r 83 (153)
+
T Consensus 780 s 780 (1317)
T KOG0612|consen 780 K 780 (1317)
T ss_pred h
Confidence 5
No 23
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=86.42 E-value=29 Score=32.61 Aligned_cols=104 Identities=27% Similarity=0.339 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHh--------cCccHHHHHHhHhHHHHHHHHHHHH---HHHHh
Q psy6538 5 IYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEA--------GGATSAQIELNKKREAEMSKLRRDL---EEANI 73 (153)
Q Consensus 5 i~eLeeeLe~Er~~R~k~Ek~r~dl~~eLe~l~~~Lee~--------~~~t~aq~el~~krE~e~~~Lrr~L---ee~~~ 73 (153)
|.-||.-|-.|+..|..+|++...-...--.-.+.--.+ ...+.+.-.=.+.-|.|+.+||++| |+...
T Consensus 490 l~~LEkrL~eE~~~R~~lEkQL~eErk~r~~ee~~aar~~~~~~~~r~e~~e~~r~r~~~lE~E~~~lr~elk~kee~~~ 569 (697)
T PF09726_consen 490 LQQLEKRLAEERRQRASLEKQLQEERKARKEEEEKAARALAQAQATRQECAESCRQRRRQLESELKKLRRELKQKEEQIR 569 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhccccchhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666777777777777776554332211100000000 0111112122233678899999776 77888
Q ss_pred hhHHHHHHHHhhh---hhHHHHHHHHHHHHhhhhhhHH
Q psy6538 74 QHESTLANLRKKH---NDAVSEMGEQIDQLNKLKTNKE 108 (153)
Q Consensus 74 ~~e~~~~~lrkkh---~~~v~el~eqie~lqr~k~klE 108 (153)
..|.-+..||+-+ ..-++.|-..|-.+|.-...||
T Consensus 570 ~~e~~~~~lr~~~~e~~~~~e~L~~aL~amqdk~~~LE 607 (697)
T PF09726_consen 570 ELESELQELRKYEKESEKDTEVLMSALSAMQDKNQHLE 607 (697)
T ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 8888888888742 3345667777777777677777
No 24
>PRK09039 hypothetical protein; Validated
Probab=85.09 E-value=23 Score=30.22 Aligned_cols=93 Identities=18% Similarity=0.200 Sum_probs=45.9
Q ss_pred hhHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHhcCccHHHHHHhHhHHHHHHHH---HHHHHHHHhhhHHH
Q psy6538 2 QARIYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEMSKL---RRDLEEANIQHEST 78 (153)
Q Consensus 2 q~~i~eLeeeLe~Er~~R~k~Ek~r~dl~~eLe~l~~~Lee~~~~t~aq~el~~krE~e~~~L---rr~Lee~~~~~e~~ 78 (153)
+++|.+|-+-|.-++.....++..-..+...|+.+...-....+ -+... ...++.....+...
T Consensus 59 ~~qIa~L~e~L~le~~~~~~l~~~l~~l~~~l~~a~~~r~~Le~--------------~~~~~~~~~~~~~~~~~~l~~~ 124 (343)
T PRK09039 59 NSQIAELADLLSLERQGNQDLQDSVANLRASLSAAEAERSRLQA--------------LLAELAGAGAAAEGRAGELAQE 124 (343)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH--------------HHhhhhhhcchHHHHHHHHHHH
Confidence 45677777777777665555555555555444433322211111 00000 01222222333344
Q ss_pred HHHHHhhhh---hHHHHHHHHHHHHhhhhhhHH
Q psy6538 79 LANLRKKHN---DAVSEMGEQIDQLNKLKTNKE 108 (153)
Q Consensus 79 ~~~lrkkh~---~~v~el~eqie~lqr~k~klE 108 (153)
+...+...+ ..|.-|+.||+.|...-+.++
T Consensus 125 L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le 157 (343)
T PRK09039 125 LDSEKQVSARALAQVELLNQQIAALRRQLAALE 157 (343)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 444444443 447788888888777766555
No 25
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=83.25 E-value=35 Score=30.79 Aligned_cols=38 Identities=29% Similarity=0.409 Sum_probs=24.5
Q ss_pred hHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHH
Q psy6538 3 ARIYELEEEVEVERQSRAKAEKQRADLARELEELGERL 40 (153)
Q Consensus 3 ~~i~eLeeeLe~Er~~R~k~Ek~r~dl~~eLe~l~~~L 40 (153)
..|..|.+.|+.-+.++..++..+..+..+.+.....|
T Consensus 179 ~Ei~~lke~l~~~~~a~~eAeee~~~~~~~~~~~~~~~ 216 (522)
T PF05701_consen 179 KEIIALKESLESAKLAHIEAEEERIEIAAEREQDAEEW 216 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45777778888777777777776666554444444443
No 26
>PRK11637 AmiB activator; Provisional
Probab=83.16 E-value=30 Score=30.06 Aligned_cols=42 Identities=19% Similarity=0.399 Sum_probs=22.5
Q ss_pred hHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHhc
Q psy6538 3 ARIYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAG 44 (153)
Q Consensus 3 ~~i~eLeeeLe~Er~~R~k~Ek~r~dl~~eLe~l~~~Lee~~ 44 (153)
.++..++.++..-........+...++..++..+..+|....
T Consensus 47 ~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~ 88 (428)
T PRK11637 47 DQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQAS 88 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555444445555555555555555555555443
No 27
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=82.59 E-value=45 Score=31.59 Aligned_cols=99 Identities=28% Similarity=0.311 Sum_probs=64.9
Q ss_pred hHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHhcCccHHHHHHhHhHHHHHHHHHHH---HHH--------H
Q psy6538 3 ARIYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRRD---LEE--------A 71 (153)
Q Consensus 3 ~~i~eLeeeLe~Er~~R~k~Ek~r~dl~~eLe~l~~~Lee~~~~t~aq~el~~krE~e~~~Lrr~---Lee--------~ 71 (153)
+.|.-|+.+|. .+|+.+..|..-|.+...+|+-+.|+.+.|.+-....-+.+..|++. .+. .
T Consensus 265 ~EiqKL~qQL~-------qve~EK~~L~~~L~e~Q~qLe~a~~als~q~eki~~L~e~l~aL~~l~~~ke~~~~~d~~~~ 337 (717)
T PF09730_consen 265 SEIQKLKQQLL-------QVEREKSSLLSNLQESQKQLEHAQGALSEQQEKINRLTEQLDALRKLQEDKEQQSAEDSEKE 337 (717)
T ss_pred HHHHHHHHHHH-------HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhhhhhhcccc
Confidence 34566666664 57888899999999999999999999999888877777778877772 111 0
Q ss_pred H------hhhHHH---HHHHHhhhhhHHHHHHHHHHHHhhhhhhHH
Q psy6538 72 N------IQHEST---LANLRKKHNDAVSEMGEQIDQLNKLKTNKE 108 (153)
Q Consensus 72 ~------~~~e~~---~~~lrkkh~~~v~el~eqie~lqr~k~klE 108 (153)
. ..++.. +.-|..|+..++.++..=-..|+..+.++.
T Consensus 338 ~~s~~d~~~ye~Di~~~eiLe~Ky~vav~Ev~~Lk~ELk~Lk~k~~ 383 (717)
T PF09730_consen 338 RDSHEDGDYYEVDINGLEILECKYKVAVSEVIQLKAELKALKSKYN 383 (717)
T ss_pred cccccccchhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 112222 234557776666665555555555544443
No 28
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=82.49 E-value=54 Score=32.44 Aligned_cols=33 Identities=18% Similarity=0.373 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q psy6538 116 LKQLKHQLNEVQSRLDEANRTINDLDVARKKLI 148 (153)
Q Consensus 116 ~k~lE~ql~el~~k~ee~~r~~~el~~~~~rl~ 148 (153)
...+++.+..+.....++...+..+...+..+.
T Consensus 872 ~~~l~~~l~~~~~~~~~l~~~l~~~~~~~~~~~ 904 (1163)
T COG1196 872 KEELEDELKELEEEKEELEEELRELESELAELK 904 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444333
No 29
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=82.37 E-value=17 Score=26.58 Aligned_cols=31 Identities=26% Similarity=0.353 Sum_probs=14.9
Q ss_pred hHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q psy6538 112 TEKVLKQLKHQLNEVQSRLDEANRTINDLDV 142 (153)
Q Consensus 112 ~ek~~k~lE~ql~el~~k~ee~~r~~~el~~ 142 (153)
.+-....++..+.++..+++|+..+=.-|..
T Consensus 96 w~~qk~~le~e~~~~~~r~~dL~~QN~lLh~ 126 (132)
T PF07926_consen 96 WEEQKEQLEKELSELEQRIEDLNEQNKLLHD 126 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444555555555555555444333333
No 30
>KOG0612|consensus
Probab=81.22 E-value=63 Score=32.44 Aligned_cols=67 Identities=25% Similarity=0.358 Sum_probs=39.6
Q ss_pred hHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHhcCccHHHHHHhHhHHHHHHHHHHHHHHHHhhhHHHHH
Q psy6538 3 ARIYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRRDLEEANIQHESTLA 80 (153)
Q Consensus 3 ~~i~eLeeeLe~Er~~R~k~Ek~r~dl~~eLe~l~~~Lee~~~~t~aq~el~~krE~e~~~Lrr~Lee~~~~~e~~~~ 80 (153)
..+.+.++-+..+++.+.+++..-+++.++|+.+....+-+.+. ...+..++++|+......-+.++
T Consensus 494 ~~~ke~~ek~~~~~~~~~~l~~~~~~~~eele~~q~~~~~~~~~-----------~~kv~~~rk~le~~~~d~~~e~~ 560 (1317)
T KOG0612|consen 494 HEQKEVEEKLSEEEAKKRKLEALVRQLEEELEDAQKKNDNAADS-----------LEKVNSLRKQLEEAELDMRAESE 560 (1317)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HhhHHHHHHHHHHhhhhhhhhHH
Confidence 44556666677777766666666666666666664444333222 23466677777766666554443
No 31
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=79.41 E-value=72 Score=31.98 Aligned_cols=31 Identities=16% Similarity=0.254 Sum_probs=13.6
Q ss_pred hHHHHHHHHhhhhhHHHHHHHHHHHHhhhhh
Q psy6538 75 HESTLANLRKKHNDAVSEMGEQIDQLNKLKT 105 (153)
Q Consensus 75 ~e~~~~~lrkkh~~~v~el~eqie~lqr~k~ 105 (153)
++..+..+...+...+.++..++..++....
T Consensus 299 s~eEL~~ll~~f~~~~~e~~~~~~~le~e~~ 329 (1311)
T TIGR00606 299 TDEQLNDLYHNHQRTVREKERELVDCQRELE 329 (1311)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444443333
No 32
>PRK09039 hypothetical protein; Validated
Probab=79.20 E-value=39 Score=28.82 Aligned_cols=36 Identities=22% Similarity=0.241 Sum_probs=18.4
Q ss_pred hHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q psy6538 112 TEKVLKQLKHQLNEVQSRLDEANRTINDLDVARKKL 147 (153)
Q Consensus 112 ~ek~~k~lE~ql~el~~k~ee~~r~~~el~~~~~rl 147 (153)
+..++-.+++.|..+..+..+.+..+.++...+...
T Consensus 149 Lr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a 184 (343)
T PRK09039 149 LRRQLAALEAALDASEKRDRESQAKIADLGRRLNVA 184 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555555555555555555554444433
No 33
>PHA02562 46 endonuclease subunit; Provisional
Probab=78.72 E-value=47 Score=29.44 Aligned_cols=47 Identities=17% Similarity=0.197 Sum_probs=19.4
Q ss_pred hHHHHHHHHHHHHHHHHHhcCccHHHHHHhHhHHHHHHHHHHHHHHH
Q psy6538 25 QRADLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRRDLEEA 71 (153)
Q Consensus 25 ~r~dl~~eLe~l~~~Lee~~~~t~aq~el~~krE~e~~~Lrr~Lee~ 71 (153)
....+..++..+...|.+.+.....-.+.-.+.+..+..++..+...
T Consensus 228 ~~~~l~~~l~~l~~~i~~l~~~i~~~~~~L~~l~~~~~~~~~~l~~~ 274 (562)
T PHA02562 228 EAKTIKAEIEELTDELLNLVMDIEDPSAALNKLNTAAAKIKSKIEQF 274 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444555555554444322222222233444444444444433
No 34
>KOG0996|consensus
Probab=77.86 E-value=80 Score=31.67 Aligned_cols=43 Identities=19% Similarity=0.252 Sum_probs=17.2
Q ss_pred HHHHHHHHHHhhhHHHHHHHHhhhhhHHHHHHHHHHHHhhhhh
Q psy6538 63 KLRRDLEEANIQHESTLANLRKKHNDAVSEMGEQIDQLNKLKT 105 (153)
Q Consensus 63 ~Lrr~Lee~~~~~e~~~~~lrkkh~~~v~el~eqie~lqr~k~ 105 (153)
..++.|++...........++.++-.--.+|..-...+..+++
T Consensus 458 ~~~~~l~e~~~~l~~~t~~~~~e~~~~ekel~~~~~~~n~~~~ 500 (1293)
T KOG0996|consen 458 KEERELDEILDSLKQETEGIREEIEKLEKELMPLLKQVNEARS 500 (1293)
T ss_pred HHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444443333333333333333333
No 35
>PRK02224 chromosome segregation protein; Provisional
Probab=77.14 E-value=67 Score=30.35 Aligned_cols=24 Identities=33% Similarity=0.522 Sum_probs=12.7
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHhc
Q psy6538 21 KAEKQRADLARELEELGERLEEAG 44 (153)
Q Consensus 21 k~Ek~r~dl~~eLe~l~~~Lee~~ 44 (153)
..+....++..+++.+...|.++.
T Consensus 381 ~~~~~l~~l~~el~el~~~l~~~~ 404 (880)
T PRK02224 381 DRREEIEELEEEIEELRERFGDAP 404 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcch
Confidence 334445555566666655555433
No 36
>KOG0946|consensus
Probab=76.76 E-value=75 Score=30.74 Aligned_cols=87 Identities=21% Similarity=0.177 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHH---HhcCccHHHHHHhHhHHHHHHHHHHHHHHHHhhh---HH
Q psy6538 4 RIYELEEEVEVERQSRAKAEKQRADLARELEELGERLE---EAGGATSAQIELNKKREAEMSKLRRDLEEANIQH---ES 77 (153)
Q Consensus 4 ~i~eLeeeLe~Er~~R~k~Ek~r~dl~~eLe~l~~~Le---e~~~~t~aq~el~~krE~e~~~Lrr~Lee~~~~~---e~ 77 (153)
.+++|++++-..-...++..++-.+|.-+|.-.++... ....++..|-+-......+..+|..+.+..+..- ..
T Consensus 686 e~eeL~~~vq~~~s~hsql~~q~~~Lk~qLg~~~~~~~~~~q~~e~~~t~~eel~a~~~e~k~l~~~q~~l~~~L~k~~~ 765 (970)
T KOG0946|consen 686 ENEELEEEVQDFISEHSQLKDQLDLLKNQLGIISSKQRDLLQGAEASKTQNEELNAALSENKKLENDQELLTKELNKKNA 765 (970)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhHHhHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 34455555544444444444444444444442222211 1122233333333333344444444444443333 44
Q ss_pred HHHHHHhhhhhHH
Q psy6538 78 TLANLRKKHNDAV 90 (153)
Q Consensus 78 ~~~~lrkkh~~~v 90 (153)
.+..+++...++.
T Consensus 766 ~~es~k~~~~~a~ 778 (970)
T KOG0946|consen 766 DIESFKATQRSAE 778 (970)
T ss_pred HHHHHHHHHhhhh
Confidence 5555555554333
No 37
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=75.48 E-value=78 Score=30.29 Aligned_cols=113 Identities=24% Similarity=0.391 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHHHHHHhcCccHHHHHHhHhHHHHHHHHHHHHHHHHhhhHHHHHHHHh-----hhhhHHHHH--------
Q psy6538 27 ADLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRRDLEEANIQHESTLANLRK-----KHNDAVSEM-------- 93 (153)
Q Consensus 27 ~dl~~eLe~l~~~Lee~~~~t~aq~el~~krE~e~~~Lrr~Lee~~~~~e~~~~~lrk-----kh~~~v~el-------- 93 (153)
.-|..+|.+....|+.+.+.++.-.-..-|.++++..|.-.++...-.++.....+.+ +..+-+..|
T Consensus 482 ~~LQ~eLsEk~~~l~~~kee~s~l~s~~~K~~s~i~~l~I~lEk~rek~~kl~~ql~k~~~~~e~~~r~~~Le~ev~~~~ 561 (775)
T PF10174_consen 482 ESLQKELSEKELQLEDAKEEASKLASSQEKKDSEIERLEIELEKKREKHEKLEKQLEKLRANAELRDRIQQLEQEVTRYR 561 (775)
T ss_pred HHHhhhhHHHHHHHHHhhhHHHHHhhccchhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHhCHhhcchHHHHHHHHHHHH
Confidence 3444555555556666666666655555666777777777777777666666666655 112222222
Q ss_pred ------HHHHHHHhhhhhhHH--HhhhHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q psy6538 94 ------GEQIDQLNKLKTNKE--EATTEKVLKQLKHQLNEVQSRLDEANRTIND 139 (153)
Q Consensus 94 ------~eqie~lqr~k~klE--k~~~ek~~k~lE~ql~el~~k~ee~~r~~~e 139 (153)
...||-|-.+-.+++ |...++.|..|+..|.+...++.........
T Consensus 562 ee~~kaq~EVERLl~~L~~~E~EK~~ke~ki~~LekeLek~~~~~~~~~~~~~~ 615 (775)
T PF10174_consen 562 EESEKAQAEVERLLDILREAENEKNDKEKKIGELEKELEKAQMHLAKQQETVEA 615 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhccchhhhhhhhhh
Confidence 222332222222333 6677777888887776666666655554443
No 38
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=75.42 E-value=62 Score=29.16 Aligned_cols=100 Identities=26% Similarity=0.411 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHHhHHHHHHHhHHHHHHHH-------HHHHHHHHHhcCccHHHHHHhHhHHHHHHHHH-HHHHHHHhhh
Q psy6538 4 RIYELEEEVEVERQSRAKAEKQRADLAREL-------EELGERLEEAGGATSAQIELNKKREAEMSKLR-RDLEEANIQH 75 (153)
Q Consensus 4 ~i~eLeeeLe~Er~~R~k~Ek~r~dl~~eL-------e~l~~~Lee~~~~t~aq~el~~krE~e~~~Lr-r~Lee~~~~~ 75 (153)
++.-+++++..=+.-..-+|+.+.+.-.|| ++|+..|+.+.... -....+.++.++| ++++......
T Consensus 35 eL~~~qeel~~~k~~l~~~E~~k~~~l~ELe~akr~veel~~kLe~~~~~~-----~~a~~~~e~~k~r~~e~e~~~~~~ 109 (522)
T PF05701_consen 35 ELEKAQEELAKLKEQLEAAEREKAQALSELESAKRTVEELKLKLEKAQAEE-----KQAEEDSELAKFRAKELEQGIAEE 109 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHhhHHhHHHHHHHhhhhccc
Confidence 344445554444444444555555555554 45555555443211 1334556666666 4554433331
Q ss_pred -----HHHHHHHHhhhhhHHHHHHHHHHHHhhhhhhHH
Q psy6538 76 -----ESTLANLRKKHNDAVSEMGEQIDQLNKLKTNKE 108 (153)
Q Consensus 76 -----e~~~~~lrkkh~~~v~el~eqie~lqr~k~klE 108 (153)
..-+...|..|...+.+|..--+.|.+++..+.
T Consensus 110 ~~~~~k~ele~~~~q~~~~~~eL~~~k~EL~~lr~e~~ 147 (522)
T PF05701_consen 110 ASVAWKAELESAREQYASAVAELDSVKQELEKLRQELA 147 (522)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 123455677777777777777777777776555
No 39
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=73.98 E-value=48 Score=27.16 Aligned_cols=8 Identities=38% Similarity=0.592 Sum_probs=3.1
Q ss_pred HHHHHHHH
Q psy6538 140 LDVARKKL 147 (153)
Q Consensus 140 l~~~~~rl 147 (153)
+.++...|
T Consensus 161 ~~~~~~~L 168 (239)
T COG1579 161 LSSKREEL 168 (239)
T ss_pred HHHHHHHH
Confidence 33333333
No 40
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=72.46 E-value=35 Score=24.93 Aligned_cols=85 Identities=27% Similarity=0.398 Sum_probs=54.3
Q ss_pred hhHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHhcCccHHHHHHhHhHHHHHHHHHHHHHHHHhhhHHHHHH
Q psy6538 2 QARIYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRRDLEEANIQHESTLAN 81 (153)
Q Consensus 2 q~~i~eLeeeLe~Er~~R~k~Ek~r~dl~~eLe~l~~~Lee~~~~t~aq~el~~krE~e~~~Lrr~Lee~~~~~e~~~~~ 81 (153)
++.|.-++-++-+=+.--.+++.+|..+..|+-.|....++. ......+..|+.++.+....+..++.-
T Consensus 22 ~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~-----------~~~~~~~~~L~~el~~l~~ry~t~Lel 90 (120)
T PF12325_consen 22 QSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEEL-----------RALKKEVEELEQELEELQQRYQTLLEL 90 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466777777777777777788888888888888888777655 333445666777777666555555544
Q ss_pred HHhhhhhHHHHHHHHHH
Q psy6538 82 LRKKHNDAVSEMGEQID 98 (153)
Q Consensus 82 lrkkh~~~v~el~eqie 98 (153)
+--| ...|.+|..-|.
T Consensus 91 lGEK-~E~veEL~~Dv~ 106 (120)
T PF12325_consen 91 LGEK-SEEVEELRADVQ 106 (120)
T ss_pred hcch-HHHHHHHHHHHH
Confidence 4332 223344444443
No 41
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=72.24 E-value=35 Score=24.86 Aligned_cols=44 Identities=23% Similarity=0.256 Sum_probs=34.6
Q ss_pred HhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhc
Q psy6538 109 EATTEKVLKQLKHQLNEVQSRLDEANRTINDLDVARKKLIIETT 152 (153)
Q Consensus 109 k~~~ek~~k~lE~ql~el~~k~ee~~r~~~el~~~~~rl~~E~~ 152 (153)
+..+.......+.+-..+...+.++...+.+|..+.+-|...+.
T Consensus 86 ~~~l~~~e~sw~~qk~~le~e~~~~~~r~~dL~~QN~lLh~QlE 129 (132)
T PF07926_consen 86 KAELEESEASWEEQKEQLEKELSELEQRIEDLNEQNKLLHDQLE 129 (132)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44555666778888888999999999999999998888876553
No 42
>PHA02562 46 endonuclease subunit; Provisional
Probab=70.88 E-value=76 Score=28.12 Aligned_cols=29 Identities=17% Similarity=0.323 Sum_probs=14.7
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHhhhhh
Q psy6538 77 STLANLRKKHNDAVSEMGEQIDQLNKLKT 105 (153)
Q Consensus 77 ~~~~~lrkkh~~~v~el~eqie~lqr~k~ 105 (153)
..+..+++.....+.++..+++.+.....
T Consensus 202 ~~i~~~~~~~~~~i~~l~~e~~~l~~~~~ 230 (562)
T PHA02562 202 KNIEEQRKKNGENIARKQNKYDELVEEAK 230 (562)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444445555555555554444
No 43
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=70.58 E-value=1.2e+02 Score=30.26 Aligned_cols=98 Identities=20% Similarity=0.377 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHhcCccHHHHHHhHhHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q psy6538 4 RIYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRRDLEEANIQHESTLANLR 83 (153)
Q Consensus 4 ~i~eLeeeLe~Er~~R~k~Ek~r~dl~~eLe~l~~~Lee~~~~t~aq~el~~krE~e~~~Lrr~Lee~~~~~e~~~~~lr 83 (153)
++..++..+..-......+++........+..+...+ +.++.++.. .+..+..|+.............+..-+
T Consensus 608 ~l~~~~~~l~~~~~~~~~~e~~l~~~~~~~~~~~~~~------~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~ 680 (1201)
T PF12128_consen 608 RLEQAEDQLQSAEERQEELEKQLKQINKKIEELKREI------TQAEQELKQ-AEQDLQRLKNEREQLKQEIEEAKEERK 680 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHh-hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444555555555555554444 333444433 345677777777777777777777777
Q ss_pred hhhhhHHHHHHHHHHHHhhhhhhHH
Q psy6538 84 KKHNDAVSEMGEQIDQLNKLKTNKE 108 (153)
Q Consensus 84 kkh~~~v~el~eqie~lqr~k~klE 108 (153)
......+..+..++..++.....+.
T Consensus 681 ~~~~~~l~~l~~~l~~~~~e~~~~~ 705 (1201)
T PF12128_consen 681 EQIEEQLNELEEELKQLKQELEELL 705 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7888888888888887775555444
No 44
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=67.97 E-value=52 Score=27.08 Aligned_cols=70 Identities=27% Similarity=0.379 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHhcCccHHHHHHhHhHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhhHHHHHHHHHH
Q psy6538 28 DLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRRDLEEANIQHESTLANLRKKHNDAVSEMGEQID 98 (153)
Q Consensus 28 dl~~eLe~l~~~Lee~~~~t~aq~el~~krE~e~~~Lrr~Lee~~~~~e~~~~~lrkkh~~~v~el~eqie 98 (153)
|+.+.++++++.|++.........+-+...++++..++-.|..... --+.+..++++-...+..|..-.+
T Consensus 132 d~ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~-E~s~LeE~~~~l~~ev~~L~~r~~ 201 (290)
T COG4026 132 DLKEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEV-ENSRLEEMLKKLPGEVYDLKKRWD 201 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhchhHHHHHHHHHH
Confidence 5556666666666665555555555555555555555544433321 113344444444444444433333
No 45
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=66.92 E-value=1.2e+02 Score=28.83 Aligned_cols=46 Identities=28% Similarity=0.457 Sum_probs=40.7
Q ss_pred HHHHHHHHHHhhhHHHHHHHHhhhhhHHHHHHHHHHHHhhhhhhHH
Q psy6538 63 KLRRDLEEANIQHESTLANLRKKHNDAVSEMGEQIDQLNKLKTNKE 108 (153)
Q Consensus 63 ~Lrr~Lee~~~~~e~~~~~lrkkh~~~v~el~eqie~lqr~k~klE 108 (153)
..+++|+++...|...++.|-.-|...++.|+..+..|.+.-..++
T Consensus 137 ~~q~ELee~q~~Hqeql~~Lt~aHq~~l~sL~~k~~~Le~~L~~le 182 (739)
T PF07111_consen 137 GSQRELEEAQRLHQEQLSSLTQAHQEALASLTSKAEELEKSLESLE 182 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3589999999999999999999999999999999998887665555
No 46
>KOG0933|consensus
Probab=66.82 E-value=1.4e+02 Score=29.66 Aligned_cols=16 Identities=31% Similarity=0.509 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHh
Q psy6538 28 DLARELEELGERLEEA 43 (153)
Q Consensus 28 dl~~eLe~l~~~Lee~ 43 (153)
-...+|+++..+|...
T Consensus 688 ~~q~el~~le~eL~~l 703 (1174)
T KOG0933|consen 688 AIQKELEALERELKSL 703 (1174)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444444444443
No 47
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=65.63 E-value=68 Score=25.64 Aligned_cols=62 Identities=16% Similarity=0.297 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHhhhhhhHH--HhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhh
Q psy6538 90 VSEMGEQIDQLNKLKTNKE--EATTEKVLKQLKHQLNEVQSRLDEANRTINDLDVARKKLIIET 151 (153)
Q Consensus 90 v~el~eqie~lqr~k~klE--k~~~ek~~k~lE~ql~el~~k~ee~~r~~~el~~~~~rl~~E~ 151 (153)
...+.++|..|...-..++ --.+++.|.+|+.++..+...+......+..+..-+....+|+
T Consensus 171 e~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k~~~~~~~~eld~~l~el 234 (237)
T PF00261_consen 171 EDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKEKEKYKKVQEELDQTLNEL 234 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444544443333333 2345556666666666665555555555555544444444443
No 48
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=62.58 E-value=85 Score=25.70 Aligned_cols=9 Identities=11% Similarity=0.187 Sum_probs=3.4
Q ss_pred HHHHHHHHH
Q psy6538 91 SEMGEQIDQ 99 (153)
Q Consensus 91 ~el~eqie~ 99 (153)
..|+-.++.
T Consensus 92 ~aL~~E~~~ 100 (239)
T COG1579 92 RALNIEIQI 100 (239)
T ss_pred HHHHHHHHH
Confidence 333333333
No 49
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=62.56 E-value=60 Score=25.81 Aligned_cols=11 Identities=18% Similarity=0.453 Sum_probs=5.3
Q ss_pred hHHHHHHHHHH
Q psy6538 88 DAVSEMGEQID 98 (153)
Q Consensus 88 ~~v~el~eqie 98 (153)
..+..+.+-|+
T Consensus 160 ~~l~~v~~Dl~ 170 (195)
T PF12761_consen 160 KNLKSVREDLD 170 (195)
T ss_pred CCHHHHHHHHH
Confidence 34444555555
No 50
>PF14916 CCDC92: Coiled-coil domain of unknown function
Probab=60.44 E-value=22 Score=23.02 Aligned_cols=32 Identities=19% Similarity=0.329 Sum_probs=27.5
Q ss_pred HhhhHHHHHHHHhhhhhHHHHHHHHHHHHhhh
Q psy6538 72 NIQHESTLANLRKKHNDAVSEMGEQIDQLNKL 103 (153)
Q Consensus 72 ~~~~e~~~~~lrkkh~~~v~el~eqie~lqr~ 103 (153)
..+-+..|..|..-|++.+..|..+|+.|++-
T Consensus 5 v~s~e~~i~FLq~eH~~tL~~LH~EIe~Lq~~ 36 (60)
T PF14916_consen 5 VQSLEKSILFLQQEHAQTLKGLHAEIERLQKR 36 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34556889999999999999999999998864
No 51
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=60.32 E-value=1e+02 Score=25.88 Aligned_cols=59 Identities=22% Similarity=0.261 Sum_probs=26.5
Q ss_pred hHHHHHHHHHHHHHHHHHhcCccHHHHHHhHhHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q psy6538 25 QRADLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRRDLEEANIQHESTLANLR 83 (153)
Q Consensus 25 ~r~dl~~eLe~l~~~Lee~~~~t~aq~el~~krE~e~~~Lrr~Lee~~~~~e~~~~~lr 83 (153)
....|..++..|...+.-..+....-......-..++..|+....+...-.-..+..+|
T Consensus 157 ~~~~L~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~Lk~~~~e~~~~D~~eL~~lr 215 (325)
T PF08317_consen 157 NLELLQEDYAKLDKQLEQLDELLPKLRERKAELEEELENLKQLVEEIESCDQEELEALR 215 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCHHHHHHHH
Confidence 33444444444444444443333333333344444555555555544444444444444
No 52
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=59.75 E-value=1.1e+02 Score=26.03 Aligned_cols=34 Identities=24% Similarity=0.312 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh
Q psy6538 116 LKQLKHQLNEVQSRLDEANRTINDLDVARKKLII 149 (153)
Q Consensus 116 ~k~lE~ql~el~~k~ee~~r~~~el~~~~~rl~~ 149 (153)
...|-+.|.+++.||.+....+.+.......+..
T Consensus 271 Q~~L~aEL~elqdkY~E~~~mL~EaQEElk~lR~ 304 (306)
T PF04849_consen 271 QRQLQAELQELQDKYAECMAMLHEAQEELKTLRK 304 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 3458888999999999999999999888877653
No 53
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=59.67 E-value=71 Score=23.82 Aligned_cols=28 Identities=14% Similarity=0.303 Sum_probs=15.2
Q ss_pred hhHHHHHHHHHHHHHHHhHHHHHHHHHH
Q psy6538 111 TTEKVLKQLKHQLNEVQSRLDEANRTIN 138 (153)
Q Consensus 111 ~~ek~~k~lE~ql~el~~k~ee~~r~~~ 138 (153)
.++++++.++.+...+..+++++...+.
T Consensus 112 ~~eRkv~~le~~~~~~E~k~eel~~k~~ 139 (143)
T PF12718_consen 112 HFERKVKALEQERDQWEEKYEELEEKYK 139 (143)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 3455555555555555555555555444
No 54
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=58.94 E-value=46 Score=21.47 Aligned_cols=59 Identities=22% Similarity=0.409 Sum_probs=34.2
Q ss_pred HHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHhcCccHHHHHHhHhHHHHHHHHHHHHHHHH
Q psy6538 7 ELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRRDLEEAN 72 (153)
Q Consensus 7 eLeeeLe~Er~~R~k~Ek~r~dl~~eLe~l~~~Lee~~~~t~aq~el~~krE~e~~~Lrr~Lee~~ 72 (153)
+|+.-|++|-.++.-+....+.+....-.+..+|.++- .-|+-...++..|+.++++..
T Consensus 1 elQsaL~~EirakQ~~~eEL~kvk~~n~~~e~kLqeaE-------~rn~eL~~ei~~L~~e~ee~r 59 (61)
T PF08826_consen 1 ELQSALEAEIRAKQAIQEELTKVKSANLAFESKLQEAE-------KRNRELEQEIERLKKEMEELR 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHhh
Confidence 57777888877665555554444444555555555541 123335666777777776643
No 55
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=58.52 E-value=1.1e+02 Score=25.54 Aligned_cols=51 Identities=22% Similarity=0.403 Sum_probs=34.5
Q ss_pred HHHhHHHHHHHHHHHHHHHHHhcCccHHHHHHhHhHHHHHHHHHHHHHHHH
Q psy6538 22 AEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRRDLEEAN 72 (153)
Q Consensus 22 ~Ek~r~dl~~eLe~l~~~Lee~~~~t~aq~el~~krE~e~~~Lrr~Lee~~ 72 (153)
+.+...++..+|+.|-.++++..+.-.-..+=..+-.+++..|..++....
T Consensus 43 ~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~ 93 (265)
T COG3883 43 LQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELK 93 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445567778888888888877766655555555566667777776666554
No 56
>KOG0996|consensus
Probab=57.91 E-value=2.2e+02 Score=28.84 Aligned_cols=78 Identities=21% Similarity=0.331 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHhcCccHHHHHHhHhHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhhHHHHHHHHHHHHhhhhhhHH
Q psy6538 30 ARELEELGERLEEAGGATSAQIELNKKREAEMSKLRRDLEEANIQHESTLANLRKKHNDAVSEMGEQIDQLNKLKTNKE 108 (153)
Q Consensus 30 ~~eLe~l~~~Lee~~~~t~aq~el~~krE~e~~~Lrr~Lee~~~~~e~~~~~lrkkh~~~v~el~eqie~lqr~k~klE 108 (153)
......++..+-+.........+-.+.--+.+-+|.++++..... ...+..+=-++...+..++..|++|.....+.+
T Consensus 383 kn~~~~~k~~~~~~e~~~vk~~E~lK~~~~k~kKleke~ek~~~~-~~e~e~~pe~~~~~i~~~~~ei~~L~~~~~~~~ 460 (1293)
T KOG0996|consen 383 KNKFESLKKKFQDLEREDVKREEKLKRLTSKIKKLEKEIEKARRK-KSELEKAPEKARIEIQKCQTEIEQLEELLEKEE 460 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-HHHHHhCchhhHhHHHHHHHHHHHHHHHHHHHH
Confidence 334555555666665555555555555555555555555555411 112222223344556666666666665555444
No 57
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=57.46 E-value=90 Score=24.33 Aligned_cols=27 Identities=19% Similarity=0.468 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhh
Q psy6538 59 AEMSKLRRDLEEANIQHESTLANLRKK 85 (153)
Q Consensus 59 ~e~~~Lrr~Lee~~~~~e~~~~~lrkk 85 (153)
.++..|+.+|+.....-...+..++..
T Consensus 117 ~~~~~l~~el~~~~~~Dp~~i~~~~~~ 143 (188)
T PF03962_consen 117 KELKELKKELEKYSENDPEKIEKLKEE 143 (188)
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 344445555554444444555555543
No 58
>KOG0933|consensus
Probab=56.97 E-value=2.1e+02 Score=28.48 Aligned_cols=74 Identities=20% Similarity=0.375 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhhHHHHHHHHHHHHhhhhhhHH--HhhhHHHHHHHHHHHHHHHhHHH
Q psy6538 57 REAEMSKLRRDLEEANIQHESTLANLRKKHNDAVSEMGEQIDQLNKLKTNKE--EATTEKVLKQLKHQLNEVQSRLD 131 (153)
Q Consensus 57 rE~e~~~Lrr~Lee~~~~~e~~~~~lrkkh~~~v~el~eqie~lqr~k~klE--k~~~ek~~k~lE~ql~el~~k~e 131 (153)
|+..+..|.+.+......-+.....+.++. ..+.-|.-.++.+++.-.+.+ =...++.+..+...+..+.+++.
T Consensus 785 re~rlkdl~keik~~k~~~e~~~~~~ek~~-~e~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~ 860 (1174)
T KOG0933|consen 785 RERRLKDLEKEIKTAKQRAEESSKELEKRE-NEYERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVD 860 (1174)
T ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555566666655555555555544333 344555555555555444443 12333344444444444444333
No 59
>KOG0980|consensus
Probab=56.71 E-value=2e+02 Score=28.13 Aligned_cols=90 Identities=26% Similarity=0.374 Sum_probs=68.1
Q ss_pred HHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHhcCccHHHHHHhHhHHHHHHHHHHHHHHHHhhhHHHHHHHHh
Q psy6538 5 IYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRRDLEEANIQHESTLANLRK 84 (153)
Q Consensus 5 i~eLeeeLe~Er~~R~k~Ek~r~dl~~eLe~l~~~Lee~~~~t~aq~el~~krE~e~~~Lrr~Lee~~~~~e~~~~~lrk 84 (153)
..+..-.+++....-..+++....|.+.|+.+........-.+..+...-..-+.|+..|...++... ..++++..
T Consensus 447 ~~di~kQle~~~~s~~~~~~~~~~L~d~le~~~~~~~~~~~K~e~~~~~le~l~~El~~l~~e~~~lq----~~~~~~~q 522 (980)
T KOG0980|consen 447 YDDIQKQLESAEQSIDDVEEENTNLNDQLEELQRAAGRAETKTESQAKALESLRQELALLLIELEELQ----RTLSNLAQ 522 (980)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH----HHhhhHHH
Confidence 34556677888888888888888888888888888777777777788887788888888888888776 44777777
Q ss_pred hhhhHHHHHHHHHH
Q psy6538 85 KHNDAVSEMGEQID 98 (153)
Q Consensus 85 kh~~~v~el~eqie 98 (153)
.|+..+..+.+.+.
T Consensus 523 s~~~~~~~l~~~l~ 536 (980)
T KOG0980|consen 523 SHNNQLAQLEDLLK 536 (980)
T ss_pred HHHHHHHHHHHHHH
Confidence 77777666665554
No 60
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=56.49 E-value=1.2e+02 Score=25.47 Aligned_cols=27 Identities=30% Similarity=0.570 Sum_probs=11.7
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHhh
Q psy6538 124 NEVQSRLDEANRTINDLDVARKKLIIE 150 (153)
Q Consensus 124 ~el~~k~ee~~r~~~el~~~~~rl~~E 150 (153)
.+++.++......+.++..++..+..+
T Consensus 233 ~el~~el~~l~~~i~~~~~~k~~l~~e 259 (325)
T PF08317_consen 233 AELQEELEELEEKIEELEEQKQELLAE 259 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444443
No 61
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=55.58 E-value=80 Score=23.16 Aligned_cols=43 Identities=14% Similarity=0.265 Sum_probs=28.6
Q ss_pred HhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhh
Q psy6538 109 EATTEKVLKQLKHQLNEVQSRLDEANRTINDLDVARKKLIIET 151 (153)
Q Consensus 109 k~~~ek~~k~lE~ql~el~~k~ee~~r~~~el~~~~~rl~~E~ 151 (153)
++..+.....|+..+-.+..++.-++++-..+...+..|++++
T Consensus 65 k~~k~~~~~eL~er~E~Le~ri~tLekQe~~l~e~l~eLq~~i 107 (119)
T COG1382 65 KVSKEEAVDELEERKETLELRIKTLEKQEEKLQERLEELQSEI 107 (119)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555666666666667777777777777666666666666554
No 62
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=54.31 E-value=1.4e+02 Score=25.62 Aligned_cols=69 Identities=20% Similarity=0.368 Sum_probs=41.5
Q ss_pred HHHHHHHhhhHHHHHHHHhhhhhHHHHHHHHHHHHhhhhhhHHH------hhhHHHHHHHHHHHHHHHhHHHHHH
Q psy6538 66 RDLEEANIQHESTLANLRKKHNDAVSEMGEQIDQLNKLKTNKEE------ATTEKVLKQLKHQLNEVQSRLDEAN 134 (153)
Q Consensus 66 r~Lee~~~~~e~~~~~lrkkh~~~v~el~eqie~lqr~k~klEk------~~~ek~~k~lE~ql~el~~k~ee~~ 134 (153)
++|++.....-..+..+-+-+......++-|...++..+..+.+ ......+..++..+.+.+..+.|++
T Consensus 14 q~Lqethr~Y~qKleel~~lQ~~C~ssI~~QkkrLk~L~~sLk~~~~~~~~e~~~~i~~L~~~Ik~r~~~l~DmE 88 (330)
T PF07851_consen 14 QELQETHRSYKQKLEELSKLQDKCSSSISHQKKRLKELKKSLKRCKKSLSAEERELIEKLEEDIKERRCQLFDME 88 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHhhHHHHH
Confidence 44455555555555566666666666666666666666665551 2334456667777777777776666
No 63
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=53.73 E-value=1.8e+02 Score=26.73 Aligned_cols=38 Identities=24% Similarity=0.295 Sum_probs=15.9
Q ss_pred hHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHH
Q psy6538 3 ARIYELEEEVEVERQSRAKAEKQRADLARELEELGERL 40 (153)
Q Consensus 3 ~~i~eLeeeLe~Er~~R~k~Ek~r~dl~~eLe~l~~~L 40 (153)
+++++.+.+.+.=.......++....|..+++.|...|
T Consensus 143 ~qlE~~qkE~eeL~~~~~~Le~e~~~l~~~v~~l~~eL 180 (546)
T PF07888_consen 143 NQLEECQKEKEELLKENEQLEEEVEQLREEVERLEAEL 180 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444433333323333344444444444444444444
No 64
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=52.90 E-value=1.2e+02 Score=24.54 Aligned_cols=79 Identities=28% Similarity=0.379 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHH--------------HHHHhcCccHHHHHHhHhHHHHHHHHHHHHH
Q psy6538 4 RIYELEEEVEVERQSRAKAEKQRADLARELEELGE--------------RLEEAGGATSAQIELNKKREAEMSKLRRDLE 69 (153)
Q Consensus 4 ~i~eLeeeLe~Er~~R~k~Ek~r~dl~~eLe~l~~--------------~Lee~~~~t~aq~el~~krE~e~~~Lrr~Le 69 (153)
.+..|.+.+......+...++.+.++..+...|.. .+.+..-.+....+-..+++.+...|+..+.
T Consensus 34 ~a~~Leek~k~aeeea~~Le~k~~eaee~~~rL~~~~~~~~eEk~~Le~e~~e~~~~i~~l~ee~~~ke~Ea~~lq~el~ 113 (246)
T PF00769_consen 34 TAEELEEKLKQAEEEAEELEQKRQEAEEEKQRLEEEAEMQEEEKEQLEQELREAEAEIARLEEESERKEEEAEELQEELE 113 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666655555556666666665555555444 4445544455566667889999999999999
Q ss_pred HHHhhhHHHHHHH
Q psy6538 70 EANIQHESTLANL 82 (153)
Q Consensus 70 e~~~~~e~~~~~l 82 (153)
.+....+.+-..|
T Consensus 114 ~ar~~~~~ak~~L 126 (246)
T PF00769_consen 114 EAREDEEEAKEEL 126 (246)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9998777766665
No 65
>KOG0977|consensus
Probab=52.87 E-value=1.9e+02 Score=26.64 Aligned_cols=23 Identities=30% Similarity=0.449 Sum_probs=12.3
Q ss_pred HhHhHHHHHHHHHHHHHHHHhhh
Q psy6538 53 LNKKREAEMSKLRRDLEEANIQH 75 (153)
Q Consensus 53 l~~krE~e~~~Lrr~Lee~~~~~ 75 (153)
++..-++|+..+++.+++....+
T Consensus 86 ik~~ye~El~~ar~~l~e~~~~r 108 (546)
T KOG0977|consen 86 IKAKYEAELATARKLLDETARER 108 (546)
T ss_pred hhHHhhhhHHHHHHHHHHHHHHH
Confidence 34445556666666665555433
No 66
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=51.79 E-value=1.1e+02 Score=23.44 Aligned_cols=26 Identities=19% Similarity=0.284 Sum_probs=16.4
Q ss_pred hHHHHHHHhHHHHHHHHHHHHHHHHH
Q psy6538 17 QSRAKAEKQRADLARELEELGERLEE 42 (153)
Q Consensus 17 ~~R~k~Ek~r~dl~~eLe~l~~~Lee 42 (153)
..+...+...-.+...+.+|+..+.-
T Consensus 44 vtk~d~e~~~~~~~a~~~eLr~el~~ 69 (177)
T PF07798_consen 44 VTKSDLENQEYLFKAAIAELRSELQN 69 (177)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666777777776643
No 67
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=50.90 E-value=2.9e+02 Score=28.14 Aligned_cols=118 Identities=18% Similarity=0.292 Sum_probs=0.0
Q ss_pred ChhHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHhcCccHHHHHHhHhHHHHHHHHHHHHHHHHhhhHHHHH
Q psy6538 1 MQARIYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRRDLEEANIQHESTLA 80 (153)
Q Consensus 1 lq~~i~eLeeeLe~Er~~R~k~Ek~r~dl~~eLe~l~~~Lee~~~~t~aq~el~~krE~e~~~Lrr~Lee~~~~~e~~~~ 80 (153)
+...+..+..+++.-+....+++..+..+..+++.+..++++..++...... .++..++.++......-+....
T Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~l~~~~~~l~~~~a~~~~------~eL~el~~ql~~~~~~a~~~~~ 354 (1353)
T TIGR02680 281 LSRDLGRARDELETAREEERELDARTEALEREADALRTRLEALQGSPAYQDA------EELERARADAEALQAAAADARQ 354 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHH------HHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHhhhhhHHHHHHHHHHHHhhhhhhHHHhhhHHHHHHHHHHHHHHHhHHHHH
Q psy6538 81 NLRKKHNDAVSEMGEQIDQLNKLKTNKEEATTEKVLKQLKHQLNEVQSRLDEA 133 (153)
Q Consensus 81 ~lrkkh~~~v~el~eqie~lqr~k~klEk~~~ek~~k~lE~ql~el~~k~ee~ 133 (153)
.++.+ ......+...++.... ......+.++..+.++..-.++.
T Consensus 355 ~~~~a-~~~~e~~~~~~~~~~~--------r~~~~~~~l~~~~~el~~~a~~~ 398 (1353)
T TIGR02680 355 AIREA-ESRLEEERRRLDEEAG--------RLDDAERELRAAREQLARAAERA 398 (1353)
T ss_pred HHHHH-HHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHhc
No 68
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=48.75 E-value=1.1e+02 Score=22.53 Aligned_cols=80 Identities=26% Similarity=0.344 Sum_probs=47.0
Q ss_pred HHHHhHhHHHHHHHHHHHHHHHHhhhHHHHH-------HHHhhhhhHHHHHHHHHHHHhhhhhhHHHhhhHHHHHHHHHH
Q psy6538 50 QIELNKKREAEMSKLRRDLEEANIQHESTLA-------NLRKKHNDAVSEMGEQIDQLNKLKTNKEEATTEKVLKQLKHQ 122 (153)
Q Consensus 50 q~el~~krE~e~~~Lrr~Lee~~~~~e~~~~-------~lrkkh~~~v~el~eqie~lqr~k~klEk~~~ek~~k~lE~q 122 (153)
.+--+..-++++....+.|++...-.+.+.- -++..+...+.+|.+.++ ..+.+.+.++.|
T Consensus 25 ~~~qk~~le~qL~E~~~al~Ele~l~eD~~vYk~VG~llvk~~k~~~~~eL~er~E------------~Le~ri~tLekQ 92 (119)
T COG1382 25 VILQKQQLEAQLKEIEKALEELEKLDEDAPVYKKVGNLLVKVSKEEAVDELEERKE------------TLELRIKTLEKQ 92 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHhhhHHhhhhHHHHHHHHHHHHH------------HHHHHHHHHHHH
Confidence 3333444555555556666555544444221 144556677778887777 455566667777
Q ss_pred HHHHHhHHHHHHHHHHHHH
Q psy6538 123 LNEVQSRLDEANRTINDLD 141 (153)
Q Consensus 123 l~el~~k~ee~~r~~~el~ 141 (153)
-..++.++++++..+....
T Consensus 93 e~~l~e~l~eLq~~i~~~l 111 (119)
T COG1382 93 EEKLQERLEELQSEIQKAL 111 (119)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 7777777777766665543
No 69
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=48.68 E-value=2.5e+02 Score=26.92 Aligned_cols=67 Identities=19% Similarity=0.222 Sum_probs=45.5
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHhcCccHHHHHHhHhHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhh
Q psy6538 21 KAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRRDLEEANIQHESTLANLRKKHN 87 (153)
Q Consensus 21 k~Ek~r~dl~~eLe~l~~~Lee~~~~t~aq~el~~krE~e~~~Lrr~Lee~~~~~e~~~~~lrkkh~ 87 (153)
..+....-|..+++.|+.+|++.............+-..+.+.+.-++++..-.++..-..+...+.
T Consensus 333 ~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~~~Ei~~l~d~~d~~e~ki~~Lq~ 399 (775)
T PF10174_consen 333 AKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQEEKSRLQGEIEDLRDMLDKKERKINVLQK 399 (775)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444566678889999999988876666666666666777777777777776666665555444443
No 70
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=48.64 E-value=89 Score=21.66 Aligned_cols=40 Identities=25% Similarity=0.353 Sum_probs=18.5
Q ss_pred hhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhh
Q psy6538 111 TTEKVLKQLKHQLNEVQSRLDEANRTINDLDVARKKLIIE 150 (153)
Q Consensus 111 ~~ek~~k~lE~ql~el~~k~ee~~r~~~el~~~~~rl~~E 150 (153)
..+.....++..+..+...+..++..+.++......+...
T Consensus 60 ~~~ea~~~Le~~~e~le~~i~~l~~~~~~l~~~~~elk~~ 99 (105)
T cd00632 60 EKEEARTELKERLETIELRIKRLERQEEDLQEKLKELQEK 99 (105)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444444444444444433
No 71
>smart00806 AIP3 Actin interacting protein 3. Aip3p/Bud6p is a regulator of cell and cytoskeletal polarity in Saccharomyces cerevisiae that was previously identified as an actin-interacting protein. Actin-interacting protein 3 (Aip3p) localizes at the cell cortex where cytoskeleton assembly must be achieved to execute polarized cell growth, and deletion of AIP3 causes gross defects in cell and cytoskeletal polarity. Aip3p localization is mediated by the secretory pathway, mutations in early- or late-acting components of the secretory apparatus lead to Aip3p mislocalization PUBMED:10679021.
Probab=48.12 E-value=2e+02 Score=25.61 Aligned_cols=81 Identities=20% Similarity=0.356 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhhHHHHHHHHHHHHhhhhhhH----HHhhhHHHHHHHHHHHHHHHhHHHH
Q psy6538 57 REAEMSKLRRDLEEANIQHESTLANLRKKHNDAVSEMGEQIDQLNKLKTNK----EEATTEKVLKQLKHQLNEVQSRLDE 132 (153)
Q Consensus 57 rE~e~~~Lrr~Lee~~~~~e~~~~~lrkkh~~~v~el~eqie~lqr~k~kl----Ek~~~ek~~k~lE~ql~el~~k~ee 132 (153)
.-+++..||++|.-..-.|- ....--..++..+.+++.+.+.+-... -++-+++..++|...-..+=++++|
T Consensus 153 ~~~el~~lrrdLavlRQ~~~----~~~~~~~~sm~~i~~k~~~~k~~~~~~~~~s~R~y~e~~k~kL~~~Sd~lltkVDD 228 (426)
T smart00806 153 QRAELKSLQRELAVLRQTHN----SFFTEIKESIKDILEKIDKFKSSSLSASGSSNRAYVESSKKKLSEDSDSLLTKVDD 228 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhhhccCCCcchHHHHHhHHHHHHHHHHHHHHHHH
Confidence 34788888888765553222 222222344555555555544431111 1666777788888888888888888
Q ss_pred HHHHHHHHH
Q psy6538 133 ANRTINDLD 141 (153)
Q Consensus 133 ~~r~~~el~ 141 (153)
++..+.++-
T Consensus 229 LQD~vE~LR 237 (426)
T smart00806 229 LQDIIEALR 237 (426)
T ss_pred HHHHHHHHH
Confidence 888777664
No 72
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=46.99 E-value=1.1e+02 Score=22.28 Aligned_cols=85 Identities=16% Similarity=0.298 Sum_probs=51.5
Q ss_pred HhHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhhHHHHHHHHHHHHhhhhhhHH--HhhhHHHHHHHHHHHHHHHhHHHH
Q psy6538 55 KKREAEMSKLRRDLEEANIQHESTLANLRKKHNDAVSEMGEQIDQLNKLKTNKE--EATTEKVLKQLKHQLNEVQSRLDE 132 (153)
Q Consensus 55 ~krE~e~~~Lrr~Lee~~~~~e~~~~~lrkkh~~~v~el~eqie~lqr~k~klE--k~~~ek~~k~lE~ql~el~~k~ee 132 (153)
+.+|.|+..++.++.......+..-.. +..|...++.+......+. +..+.....++..-|.-+..|.++
T Consensus 26 r~~E~E~~~l~~el~~l~~~r~~l~~E--------iv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~t~LellGEK~E~ 97 (120)
T PF12325_consen 26 RRLEGELASLQEELARLEAERDELREE--------IVKLMEENEELRALKKEVEELEQELEELQQRYQTLLELLGEKSEE 97 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 679999999999988877666555444 3445555555544444333 223334445566666666666666
Q ss_pred HHHHHHHHHHHHHHH
Q psy6538 133 ANRTINDLDVARKKL 147 (153)
Q Consensus 133 ~~r~~~el~~~~~rl 147 (153)
.+-...|+..-+.=.
T Consensus 98 veEL~~Dv~DlK~my 112 (120)
T PF12325_consen 98 VEELRADVQDLKEMY 112 (120)
T ss_pred HHHHHHHHHHHHHHH
Confidence 666666666555433
No 73
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=46.35 E-value=3.2e+02 Score=27.35 Aligned_cols=38 Identities=24% Similarity=0.300 Sum_probs=18.6
Q ss_pred HHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHhc
Q psy6538 7 ELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAG 44 (153)
Q Consensus 7 eLeeeLe~Er~~R~k~Ek~r~dl~~eLe~l~~~Lee~~ 44 (153)
++..+++.=+....-....-.|+...++.+...|++..
T Consensus 356 ~~~~~~~~l~~~~~~Lt~~~~di~~ky~~~~~~l~~~~ 393 (1201)
T PF12128_consen 356 EWRNELENLQEQLDLLTSKHQDIESKYNKLKQKLEEAF 393 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344443334444444455555666666555555443
No 74
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=46.17 E-value=1.8e+02 Score=24.48 Aligned_cols=40 Identities=23% Similarity=0.361 Sum_probs=33.6
Q ss_pred hHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhh
Q psy6538 112 TEKVLKQLKHQLNEVQSRLDEANRTINDLDVARKKLIIET 151 (153)
Q Consensus 112 ~ek~~k~lE~ql~el~~k~ee~~r~~~el~~~~~rl~~E~ 151 (153)
+-+.++++|..-..|+.+.+..+..+.++..-+..+..++
T Consensus 249 m~Kk~kklEKE~~~~k~k~e~~n~~l~~m~eer~~~~~~~ 288 (309)
T PF09728_consen 249 MSKKIKKLEKENQTWKSKWEKSNKALIEMAEERQKLEKEL 288 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 3466888999999999999999999999998877765543
No 75
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=46.16 E-value=1.2e+02 Score=22.53 Aligned_cols=51 Identities=25% Similarity=0.344 Sum_probs=29.4
Q ss_pred HHHHhhhhhhHH--HhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q psy6538 97 IDQLNKLKTNKE--EATTEKVLKQLKHQLNEVQSRLDEANRTINDLDVARKKL 147 (153)
Q Consensus 97 ie~lqr~k~klE--k~~~ek~~k~lE~ql~el~~k~ee~~r~~~el~~~~~rl 147 (153)
++++.|--+-|| =-.+++..+.....|.++..+++.+.|.+..+......+
T Consensus 75 ~E~l~rriq~LEeele~ae~~L~e~~ekl~e~d~~ae~~eRkv~~le~~~~~~ 127 (143)
T PF12718_consen 75 AEQLNRRIQLLEEELEEAEKKLKETTEKLREADVKAEHFERKVKALEQERDQW 127 (143)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHH
Confidence 334444444444 224555666666666777777777777776666655443
No 76
>PLN03188 kinesin-12 family protein; Provisional
Probab=45.87 E-value=1.2e+02 Score=30.71 Aligned_cols=80 Identities=24% Similarity=0.377 Sum_probs=50.1
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHhcCccHHHHHHhHh-HHHHHHHH---HHHHH--HHHhhhHHHHHHHHhhhhhHHH
Q psy6538 18 SRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKK-REAEMSKL---RRDLE--EANIQHESTLANLRKKHNDAVS 91 (153)
Q Consensus 18 ~R~k~Ek~r~dl~~eLe~l~~~Lee~~~~t~aq~el~~k-rE~e~~~L---rr~Le--e~~~~~e~~~~~lrkkh~~~v~ 91 (153)
.|.--||.|+-|..|=-.|+.+|-++..+.+|--||--+ ||+|=+.- +|.+. ..+..--..|..||+||-..+.
T Consensus 1167 l~~ereker~~~~~enk~l~~qlrdtaeav~aagellvrl~eaeea~~~a~~r~~~~eqe~~~~~k~~~klkrkh~~e~~ 1246 (1320)
T PLN03188 1167 LKVEREKERRYLRDENKSLQAQLRDTAEAVQAAGELLVRLKEAEEALTVAQKRAMDAEQEAAEAYKQIDKLKRKHENEIS 1246 (1320)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556778888888889999999999999998888755 66643221 11111 1111111346677777766666
Q ss_pred HHHHHH
Q psy6538 92 EMGEQI 97 (153)
Q Consensus 92 el~eqi 97 (153)
.|...+
T Consensus 1247 t~~q~~ 1252 (1320)
T PLN03188 1247 TLNQLV 1252 (1320)
T ss_pred HHHHHH
Confidence 666655
No 77
>PRK10884 SH3 domain-containing protein; Provisional
Probab=45.86 E-value=1.5e+02 Score=23.53 Aligned_cols=23 Identities=39% Similarity=0.569 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHH
Q psy6538 117 KQLKHQLNEVQSRLDEANRTIND 139 (153)
Q Consensus 117 k~lE~ql~el~~k~ee~~r~~~e 139 (153)
..+..++..++.+++..+....+
T Consensus 142 ~~L~~~l~~~~~~~~~l~~~~~~ 164 (206)
T PRK10884 142 QKLKNQLIVAQKKVDAANLQLDD 164 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444443333
No 78
>PRK10698 phage shock protein PspA; Provisional
Probab=45.52 E-value=1.6e+02 Score=23.56 Aligned_cols=35 Identities=26% Similarity=0.417 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHH
Q psy6538 5 IYELEEEVEVERQSRAKAEKQRADLARELEELGER 39 (153)
Q Consensus 5 i~eLeeeLe~Er~~R~k~Ek~r~dl~~eLe~l~~~ 39 (153)
|.++++++..=|..-+++=-...-+.+.++.+...
T Consensus 33 i~em~~~l~~~r~alA~~~A~~k~~er~~~~~~~~ 67 (222)
T PRK10698 33 IQEMEDTLVEVRSTSARALAEKKQLTRRIEQAEAQ 67 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444433
No 79
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=44.72 E-value=1.6e+02 Score=23.54 Aligned_cols=101 Identities=16% Similarity=0.323 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHhHHHHHHHh-HHHHHHHHHHHHHHHHHhcCccHHHHH-HhHhHHHHHHHHHHHHHHHHhhhHHHHHHH
Q psy6538 5 IYELEEEVEVERQSRAKAEKQ-RADLARELEELGERLEEAGGATSAQIE-LNKKREAEMSKLRRDLEEANIQHESTLANL 82 (153)
Q Consensus 5 i~eLeeeLe~Er~~R~k~Ek~-r~dl~~eLe~l~~~Lee~~~~t~aq~e-l~~krE~e~~~Lrr~Lee~~~~~e~~~~~l 82 (153)
|.-|+..|+.|-.-|.-+.+. ..-+...+..|.+.+......-..+.. .-..-...+..|...+.+........+..+
T Consensus 43 i~~Le~~l~~E~k~R~E~~~~lq~~~e~~i~~~~~~v~~~~~~~~~~~~~~l~~L~~ri~~L~~~i~ee~~~r~~~ie~~ 122 (247)
T PF06705_consen 43 IQKLEKALEAEVKRRVESNKKLQSKFEEQINNMQERVENQISEKQEQLQSRLDSLNDRIEALEEEIQEEKEERPQDIEEL 122 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 444444555554444444443 333344444444444333322222211 112244455555566666666666666666
Q ss_pred HhhhhhHHHHHHHHHHHHhhhhh
Q psy6538 83 RKKHNDAVSEMGEQIDQLNKLKT 105 (153)
Q Consensus 83 rkkh~~~v~el~eqie~lqr~k~ 105 (153)
...-...+.+|.+.++.=...+.
T Consensus 123 ~~~l~~~l~~l~~~~~~Er~~R~ 145 (247)
T PF06705_consen 123 NQELVRELNELQEAFENERNERE 145 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555666666666665444443
No 80
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=44.58 E-value=1.8e+02 Score=24.01 Aligned_cols=20 Identities=30% Similarity=0.547 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHhHHHHH
Q psy6538 114 KVLKQLKHQLNEVQSRLDEA 133 (153)
Q Consensus 114 k~~k~lE~ql~el~~k~ee~ 133 (153)
-..+++...+..+..+.+++
T Consensus 184 E~~~~l~~ev~~L~~r~~EL 203 (290)
T COG4026 184 EMLKKLPGEVYDLKKRWDEL 203 (290)
T ss_pred HHHHhchhHHHHHHHHHHHh
Confidence 33344444444444444444
No 81
>PF06548 Kinesin-related: Kinesin-related; InterPro: IPR010544 This entry represents a domain within kinesin-related proteins from higher plants. Many proteins containing this domain also contain the IPR001752 from INTERPRO domain. Kinesins are ATP-driven microtubule motor proteins that produce directed force []. Some family members are associated with the phragmoplast, a structure composed mainly of microtubules that executes cytokinesis in higher plants [].
Probab=44.56 E-value=1.7e+02 Score=26.35 Aligned_cols=79 Identities=32% Similarity=0.362 Sum_probs=48.2
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHhcCccHHHHHHhHh-HHHHHHHHH-----HHHHHHHhhhHHHHHHHHhhhhhHHHH
Q psy6538 19 RAKAEKQRADLARELEELGERLEEAGGATSAQIELNKK-REAEMSKLR-----RDLEEANIQHESTLANLRKKHNDAVSE 92 (153)
Q Consensus 19 R~k~Ek~r~dl~~eLe~l~~~Lee~~~~t~aq~el~~k-rE~e~~~Lr-----r~Lee~~~~~e~~~~~lrkkh~~~v~e 92 (153)
|.--||.|+-|..|=-.|+.+|-|+..+.+|--||--+ ||+|-+.-- -..+..+..--..|..|++||-.-+..
T Consensus 398 r~erEkEr~~l~~eNk~L~~QLrDTAEAVqAagEllvrl~eaeea~~~a~~r~~~~eqe~ek~~kqiekLK~kh~~Ei~t 477 (488)
T PF06548_consen 398 RAEREKERRFLKDENKGLQIQLRDTAEAVQAAGELLVRLREAEEAASVAQERAMDAEQENEKAKKQIEKLKRKHKMEIST 477 (488)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44456777788888888888999998888888887655 555432211 111222222224566677777666665
Q ss_pred HHHHH
Q psy6538 93 MGEQI 97 (153)
Q Consensus 93 l~eqi 97 (153)
|+..+
T Consensus 478 ~kq~l 482 (488)
T PF06548_consen 478 MKQYL 482 (488)
T ss_pred HHHHH
Confidence 55544
No 82
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=43.85 E-value=2.5e+02 Score=25.40 Aligned_cols=40 Identities=15% Similarity=0.262 Sum_probs=28.3
Q ss_pred HhhhHHHHHHHHHHHHHHHhHHHHHHH----HHHHHHHHHHHHH
Q psy6538 109 EATTEKVLKQLKHQLNEVQSRLDEANR----TINDLDVARKKLI 148 (153)
Q Consensus 109 k~~~ek~~k~lE~ql~el~~k~ee~~r----~~~el~~~~~rl~ 148 (153)
+..++...+++-.+|..++.+++++.. ....|..++..|.
T Consensus 135 ~~~l~~ll~Pl~e~l~~f~~~v~~~~~~~~~~~~~L~~qi~~L~ 178 (475)
T PRK10361 135 RQSLNSLLSPLREQLDGFRRQVQDSFGKEAQERHTLAHEIRNLQ 178 (475)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556677788888899888888888764 3455555555554
No 83
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=43.40 E-value=2.6e+02 Score=25.60 Aligned_cols=93 Identities=22% Similarity=0.365 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHHhHHHHHHHhHHHH--HHHHHHHHHHHHHhcCccHH-HHHHhHhHHHHHHHHHHHHHHHHhhhHHHHHH
Q psy6538 5 IYELEEEVEVERQSRAKAEKQRADL--ARELEELGERLEEAGGATSA-QIELNKKREAEMSKLRRDLEEANIQHESTLAN 81 (153)
Q Consensus 5 i~eLeeeLe~Er~~R~k~Ek~r~dl--~~eLe~l~~~Lee~~~~t~a-q~el~~krE~e~~~Lrr~Lee~~~~~e~~~~~ 81 (153)
+++++..++. .+.+......+| ..++++++.+++......-- =.++ .+.-.++.+|++++.... ..+..
T Consensus 166 ~~~~~~~~k~---~~~~w~~~~~~Lp~~~~~~~yk~~v~~i~~~~ik~p~~i-~~~~~e~d~lk~e~~~~~----~~i~~ 237 (555)
T TIGR03545 166 AEEIEKSLKA---MQQKWKKRKKDLPNKQDLEEYKKRLEAIKKKDIKNPLEL-QKIKEEFDKLKKEGKADK----QKIKS 237 (555)
T ss_pred HHHHHHHHHH---HHHHHHHHHHhcCCchhHHHHHHHHHHHHhccCCCHHHH-HHHHHHHHHHHHHHHHHH----HHHHH
Confidence 4555555543 334555556666 67888888888777653111 1122 334447777777776665 56667
Q ss_pred HHhhhhhHHHHHHHHHHHHhhhhh
Q psy6538 82 LRKKHNDAVSEMGEQIDQLNKLKT 105 (153)
Q Consensus 82 lrkkh~~~v~el~eqie~lqr~k~ 105 (153)
++.--......+..++..++++.+
T Consensus 238 ~~~~l~~~~~~~~~~~~~lk~ap~ 261 (555)
T TIGR03545 238 AKNDLQNDKKQLKADLAELKKAPQ 261 (555)
T ss_pred HHHHHHHhHHHHHHHHHHHHhccH
Confidence 776666777777777777776655
No 84
>KOG0976|consensus
Probab=40.91 E-value=3.6e+02 Score=26.51 Aligned_cols=41 Identities=22% Similarity=0.297 Sum_probs=23.6
Q ss_pred hHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHh
Q psy6538 3 ARIYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEA 43 (153)
Q Consensus 3 ~~i~eLeeeLe~Er~~R~k~Ek~r~dl~~eLe~l~~~Lee~ 43 (153)
..+.+++-++-.=..++..++-+.+.-.-+|+.+..+|...
T Consensus 113 n~c~~lE~ekq~lQ~ti~~~q~d~ke~etelE~~~srlh~l 153 (1265)
T KOG0976|consen 113 NKCLRLEMEKQKLQDTIQGAQDDKKENEIEIENLNSRLHKL 153 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 34444444444445566666666666666677766665443
No 85
>KOG4674|consensus
Probab=40.25 E-value=4.8e+02 Score=27.73 Aligned_cols=37 Identities=24% Similarity=0.344 Sum_probs=23.0
Q ss_pred hHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHH
Q psy6538 3 ARIYELEEEVEVERQSRAKAEKQRADLARELEELGER 39 (153)
Q Consensus 3 ~~i~eLeeeLe~Er~~R~k~Ek~r~dl~~eLe~l~~~ 39 (153)
.+|..|+..|++.-.-+........++..+|+.+...
T Consensus 59 kK~~~l~q~~~~~~~q~~~~~~e~s~l~~~L~~~~~~ 95 (1822)
T KOG4674|consen 59 KKILRLEQRLSDLSRQAKLLRNELSDLRNELEQLSSE 95 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 4566777777766555566666666666666654443
No 86
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=39.29 E-value=3.2e+02 Score=25.44 Aligned_cols=14 Identities=29% Similarity=0.394 Sum_probs=6.7
Q ss_pred HHHHHHHHHhhhhh
Q psy6538 92 EMGEQIDQLNKLKT 105 (153)
Q Consensus 92 el~eqie~lqr~k~ 105 (153)
+|.+|+..++...-
T Consensus 164 eLK~QL~Elq~~Fv 177 (617)
T PF15070_consen 164 ELKEQLAELQDAFV 177 (617)
T ss_pred HHHHHHHHHHHHHH
Confidence 45555555544333
No 87
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=39.22 E-value=1.4e+02 Score=21.26 Aligned_cols=36 Identities=31% Similarity=0.486 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhh
Q psy6538 116 LKQLKHQLNEVQSRLDEANRTINDLDVARKKLIIET 151 (153)
Q Consensus 116 ~k~lE~ql~el~~k~ee~~r~~~el~~~~~rl~~E~ 151 (153)
...+|.++..+...+.++...+.++....++|.-||
T Consensus 10 l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN 45 (107)
T PF06156_consen 10 LDQLEQQLGQLLEELEELKKQLQELLEENARLRIEN 45 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666666666666666666666666666666655
No 88
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=38.90 E-value=99 Score=19.40 Aligned_cols=36 Identities=19% Similarity=0.386 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhh
Q psy6538 116 LKQLKHQLNEVQSRLDEANRTINDLDVARKKLIIET 151 (153)
Q Consensus 116 ~k~lE~ql~el~~k~ee~~r~~~el~~~~~rl~~E~ 151 (153)
...|+..+..+....+.+...+..+......|.++|
T Consensus 28 ~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e~ 63 (64)
T PF00170_consen 28 IEELEEKVEELESENEELKKELEQLKKEIQSLKSEN 63 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 344555555555555555555555555555555543
No 89
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=38.83 E-value=31 Score=32.24 Aligned_cols=42 Identities=26% Similarity=0.298 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHhc
Q psy6538 3 ARIYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAG 44 (153)
Q Consensus 3 ~~i~eLeeeLe~Er~~R~k~Ek~r~dl~~eLe~l~~~Lee~~ 44 (153)
..|..++..+.+-.....+.++++.-+..|.+-|+..|+...
T Consensus 385 ~~~~~l~~~~~~~~~~~~RLerq~~L~~kE~d~LR~~L~syd 426 (722)
T PF05557_consen 385 KEIEELEASLEALKKLIRRLERQKALATKERDYLRAQLKSYD 426 (722)
T ss_dssp ------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 445666666666777888999999999999999999987643
No 90
>PRK10884 SH3 domain-containing protein; Provisional
Probab=38.45 E-value=2e+02 Score=22.82 Aligned_cols=23 Identities=13% Similarity=0.124 Sum_probs=14.1
Q ss_pred HHhHhHHHHHHHHHHHHHHHHhh
Q psy6538 52 ELNKKREAEMSKLRRDLEEANIQ 74 (153)
Q Consensus 52 el~~krE~e~~~Lrr~Lee~~~~ 74 (153)
..-.+-+.++..|+..|.+....
T Consensus 93 ~rlp~le~el~~l~~~l~~~~~~ 115 (206)
T PRK10884 93 TRVPDLENQVKTLTDKLNNIDNT 115 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhH
Confidence 34455667777777666665533
No 91
>KOG4674|consensus
Probab=38.11 E-value=5.2e+02 Score=27.49 Aligned_cols=138 Identities=20% Similarity=0.261 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHhcCccHHHH---------------------HHhHhHHHHHH
Q psy6538 4 RIYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQI---------------------ELNKKREAEMS 62 (153)
Q Consensus 4 ~i~eLeeeLe~Er~~R~k~Ek~r~dl~~eLe~l~~~Lee~~~~t~aq~---------------------el~~krE~e~~ 62 (153)
.+..+..++......+.=+......|...++-++..++....-..-.+ +.-++-++++.
T Consensus 669 ev~~ir~~l~k~~~~~~fA~ekle~L~~~ie~~K~e~~tL~er~~~l~~~i~~~~q~~~~~s~eL~~a~~k~~~le~ev~ 748 (1822)
T KOG4674|consen 669 EVTAIRSQLEKLKNELNLAKEKLENLEKNLELTKEEVETLEERNKNLQSTISKQEQTVHTLSQELLSANEKLEKLEAELS 748 (1822)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 445555555555555555555555565555555555442221111111 22234555666
Q ss_pred HHHHHHHHHHhhhHHHHHHHHhhhhhHHHHHHHHHHHHhhhhhhHH------HhhhHHHHHHHHHHHHHHHhHHHHHHHH
Q psy6538 63 KLRRDLEEANIQHESTLANLRKKHNDAVSEMGEQIDQLNKLKTNKE------EATTEKVLKQLKHQLNEVQSRLDEANRT 136 (153)
Q Consensus 63 ~Lrr~Lee~~~~~e~~~~~lrkkh~~~v~el~eqie~lqr~k~klE------k~~~ek~~k~lE~ql~el~~k~ee~~r~ 136 (153)
.|+.+-.-.....+.....+-+.+. -...|..-+.++|-....++ +..++.+.+.|+..|..++.++.+....
T Consensus 749 ~LKqE~~ll~~t~~rL~~e~~~l~~-e~~~L~~~l~~lQt~~~~~e~s~~~~k~~~e~~i~eL~~el~~lk~klq~~~~~ 827 (1822)
T KOG4674|consen 749 NLKQEKLLLKETEERLSQELEKLSA-EQESLQLLLDNLQTQKNELEESEMATKDKCESRIKELERELQKLKKKLQEKSSD 827 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6655544333333332222222221 12333333333433333333 4555566666666666666655555444
Q ss_pred HHHHHH
Q psy6538 137 INDLDV 142 (153)
Q Consensus 137 ~~el~~ 142 (153)
+.+++.
T Consensus 828 ~r~l~~ 833 (1822)
T KOG4674|consen 828 LRELTN 833 (1822)
T ss_pred HHHHHh
Confidence 444443
No 92
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=37.93 E-value=1.2e+02 Score=20.04 Aligned_cols=56 Identities=18% Similarity=0.345 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHhhhhhhHH--HhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy6538 89 AVSEMGEQIDQLNKLKTNKE--EATTEKVLKQLKHQLNEVQSRLDEANRTINDLDVAR 144 (153)
Q Consensus 89 ~v~el~eqie~lqr~k~klE--k~~~ek~~k~lE~ql~el~~k~ee~~r~~~el~~~~ 144 (153)
.|..|.+..+.|.+.-.+.. --.+....+.+|.++..++.++++....+..+....
T Consensus 13 ~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~~l 70 (74)
T PF12329_consen 13 QIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELESLEERL 70 (74)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444455555444444333 112233445566666666666666666665555443
No 93
>KOG0976|consensus
Probab=37.14 E-value=4.2e+02 Score=26.12 Aligned_cols=115 Identities=24% Similarity=0.272 Sum_probs=68.9
Q ss_pred HHHHHhHHHHHHHHHHHHHH-HHHhcCccHHHHHHhHhHHHHHHH-HHH---HHHHHHhhhHHHHHHHHhhhhhHHHHHH
Q psy6538 20 AKAEKQRADLARELEELGER-LEEAGGATSAQIELNKKREAEMSK-LRR---DLEEANIQHESTLANLRKKHNDAVSEMG 94 (153)
Q Consensus 20 ~k~Ek~r~dl~~eLe~l~~~-Lee~~~~t~aq~el~~krE~e~~~-Lrr---~Lee~~~~~e~~~~~lrkkh~~~v~el~ 94 (153)
..+++---|+..+-+++.+. ++.+|-..+.+++-.+++=.+... +|+ .+|+...+|+.+|.-|-.+ +..+.
T Consensus 44 L~aeniiqdlrserdalhe~lvdkaglneSviie~sk~vstqetriyRrdv~llEddlk~~~sQiriLQn~----c~~lE 119 (1265)
T KOG0976|consen 44 LDAENIIQDLRSERDALHESLVDKAGLNESVIIEQSKKVSTQETRIYRRDVNLLEDDLKHHESQIRILQNK----CLRLE 119 (1265)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhhccchhhhhhcchhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH----HHHHH
Confidence 35566667888888888877 577778888899988887665554 554 4677888888777666433 23333
Q ss_pred HHHHHHhhhhhhHH------HhhhHHHHHHHHHHHHHHHhHHHHHHHHHH
Q psy6538 95 EQIDQLNKLKTNKE------EATTEKVLKQLKHQLNEVQSRLDEANRTIN 138 (153)
Q Consensus 95 eqie~lqr~k~klE------k~~~ek~~k~lE~ql~el~~k~ee~~r~~~ 138 (153)
.+.-.||-..+-++ +...|--.-.++.-..++.++..|..+...
T Consensus 120 ~ekq~lQ~ti~~~q~d~ke~etelE~~~srlh~le~eLsAk~~eIf~~~~ 169 (1265)
T KOG0976|consen 120 MEKQKLQDTIQGAQDDKKENEIEIENLNSRLHKLEDELSAKAHDIFMIGE 169 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHHHHHHH
Confidence 34444443333333 333444444444445555555555544433
No 94
>KOG0964|consensus
Probab=36.85 E-value=4.5e+02 Score=26.35 Aligned_cols=50 Identities=16% Similarity=0.252 Sum_probs=35.8
Q ss_pred hHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHhcCccHHHHH
Q psy6538 3 ARIYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIE 52 (153)
Q Consensus 3 ~~i~eLeeeLe~Er~~R~k~Ek~r~dl~~eLe~l~~~Lee~~~~t~aq~e 52 (153)
-.|..|++++...+..|..+......+.+..++-..+|....-.-..+++
T Consensus 307 l~~kdlq~~i~~n~q~r~~~l~~l~~~~~ki~e~~~EL~~I~Pky~~l~~ 356 (1200)
T KOG0964|consen 307 LKIKDLQDQITGNEQQRNLALHVLQKVKDKIEEKKDELSKIEPKYNSLVD 356 (1200)
T ss_pred hhhHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHh
Confidence 35777888888888888888888888888877777777665544444433
No 95
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=35.94 E-value=2.1e+02 Score=22.26 Aligned_cols=23 Identities=35% Similarity=0.603 Sum_probs=9.4
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHH
Q psy6538 119 LKHQLNEVQSRLDEANRTINDLD 141 (153)
Q Consensus 119 lE~ql~el~~k~ee~~r~~~el~ 141 (153)
+..++..+..++.++......+.
T Consensus 117 l~~~l~~l~~kl~e~k~k~~~l~ 139 (221)
T PF04012_consen 117 LKEQLEELEAKLEELKSKREELK 139 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444443333
No 96
>PF07352 Phage_Mu_Gam: Bacteriophage Mu Gam like protein; InterPro: IPR009951 The Gam protein, originally characterised in Bacteriophage Mu, protects linear double stranded DNA from exonuclease degradation in vitro and in vivo []. This protein is also found in many bacterial species as part of a suspected prophage. Further studies have shown that Gam is a functional counterpart of the eukaryotic Ku protein, which has key roles in DNA repair and in certain transposition events. Gam displays DNA binding characteristics remarkably similar to those of human Ku []. In addition, Gam can interfere with Ty1 retrotransposition in Saccharomyces cerevisiae (Baker's yeast). These data reveal structural and functional parallels between bacteriophage Gam and eukaryotic Ku and suggest that their functions have been evolutionarily conserved [].; GO: 0003690 double-stranded DNA binding, 0042262 DNA protection; PDB: 2P2U_B.
Probab=35.71 E-value=1.3e+02 Score=22.23 Aligned_cols=41 Identities=12% Similarity=0.386 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHhhhhhHHHHHHHHHHHHh
Q psy6538 61 MSKLRRDLEEANIQHESTLANLRKKHNDAVSEMGEQIDQLN 101 (153)
Q Consensus 61 ~~~Lrr~Lee~~~~~e~~~~~lrkkh~~~v~el~eqie~lq 101 (153)
+..+++++.+........|..++..+...+..+...++.+.
T Consensus 12 i~~l~~~~~~i~~~~~~~I~~i~~~~~~~~~~l~~~i~~l~ 52 (149)
T PF07352_consen 12 IAELQREIARIEAEANDEIARIKEWYEAEIAPLQNRIEYLE 52 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555556666666666655555555555443
No 97
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=34.96 E-value=3.8e+02 Score=24.98 Aligned_cols=76 Identities=24% Similarity=0.388 Sum_probs=40.6
Q ss_pred hHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHhcCc--cHHHHHHhHhHHHHHHHHHHHHHHHHhhhHHH
Q psy6538 3 ARIYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGGA--TSAQIELNKKREAEMSKLRRDLEEANIQHEST 78 (153)
Q Consensus 3 ~~i~eLeeeLe~Er~~R~k~Ek~r~dl~~eLe~l~~~Lee~~~~--t~aq~el~~krE~e~~~Lrr~Lee~~~~~e~~ 78 (153)
.++..+.+++..=+.-+...-..-..|.+.|..|+.++...... ++.-.+.-....+++..|+++++.......+.
T Consensus 29 qr~~qmseev~~L~eEk~~~~~~V~eLE~sL~eLk~q~~~~~~~~~pa~pse~E~~Lq~E~~~L~kElE~L~~qlqaq 106 (617)
T PF15070_consen 29 QRMQQMSEEVRTLKEEKEHDISRVQELERSLSELKNQMAEPPPPEPPAGPSEVEQQLQAEAEHLRKELESLEEQLQAQ 106 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555554444444444455667777777777776554421 11111222344556666777776666554443
No 98
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=34.69 E-value=2.9e+02 Score=23.53 Aligned_cols=37 Identities=24% Similarity=0.355 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHH----HHHHhhh
Q psy6538 115 VLKQLKHQLNEVQSRLDEANRTINDLDVAR----KKLIIET 151 (153)
Q Consensus 115 ~~k~lE~ql~el~~k~ee~~r~~~el~~~~----~rl~~E~ 151 (153)
..-.|..||.++..|++.-++.++++..+. .+|+++.
T Consensus 229 EN~LLrQQLddA~~K~~~kek~ViniQ~~f~d~~~~L~ae~ 269 (305)
T PF14915_consen 229 ENMLLRQQLDDAHNKADNKEKTVINIQDQFQDIVKKLQAES 269 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 344566777777777777777777665544 5555553
No 99
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=34.48 E-value=2.4e+02 Score=22.54 Aligned_cols=81 Identities=33% Similarity=0.491 Sum_probs=50.4
Q ss_pred hHHHHHHHHHHHHHhHHHH-HHHhHHHHHHHHHHHHHHHHHhc-CccHHHHHHhHhHHHHHHHHHHHHHHHHhhhHHHHH
Q psy6538 3 ARIYELEEEVEVERQSRAK-AEKQRADLARELEELGERLEEAG-GATSAQIELNKKREAEMSKLRRDLEEANIQHESTLA 80 (153)
Q Consensus 3 ~~i~eLeeeLe~Er~~R~k-~Ek~r~dl~~eLe~l~~~Lee~~-~~t~aq~el~~krE~e~~~Lrr~Lee~~~~~e~~~~ 80 (153)
.+|..|...+..|+.-|+. .+.....|..+|.+|..-++.-. .-......+.++-+..+..+...++......+..++
T Consensus 99 ~ri~~L~~~i~ee~~~r~~~ie~~~~~l~~~l~~l~~~~~~Er~~R~erE~~i~krl~e~~~~l~~~i~~Ek~~Re~~~~ 178 (247)
T PF06705_consen 99 DRIEALEEEIQEEKEERPQDIEELNQELVRELNELQEAFENERNEREEREENILKRLEEEENRLQEKIEKEKNTRESKLS 178 (247)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777777777777766 55556677777777777665443 222334445555555666666666666666666665
Q ss_pred HHH
Q psy6538 81 NLR 83 (153)
Q Consensus 81 ~lr 83 (153)
.|+
T Consensus 179 ~l~ 181 (247)
T PF06705_consen 179 ELR 181 (247)
T ss_pred HHH
Confidence 555
No 100
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=34.04 E-value=2.9e+02 Score=23.37 Aligned_cols=57 Identities=14% Similarity=0.222 Sum_probs=29.8
Q ss_pred HHHHHHHHHhhhhhhHH--HhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q psy6538 92 EMGEQIDQLNKLKTNKE--EATTEKVLKQLKHQLNEVQSRLDEANRTINDLDVARKKLI 148 (153)
Q Consensus 92 el~eqie~lqr~k~klE--k~~~ek~~k~lE~ql~el~~k~ee~~r~~~el~~~~~rl~ 148 (153)
.|.+.++++.+.+.|+. -..-+-.+--+|.||.-.+..++-++.-+.-+-..+.|.+
T Consensus 71 ~l~e~c~~lek~rqKlshdlq~Ke~qv~~lEgQl~s~Kkqie~Leqelkr~KsELErsQ 129 (307)
T PF10481_consen 71 SLMESCENLEKTRQKLSHDLQVKESQVNFLEGQLNSCKKQIEKLEQELKRCKSELERSQ 129 (307)
T ss_pred hHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667788888888765 2222333444555555555544444444444444444443
No 101
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=33.74 E-value=1.8e+02 Score=20.90 Aligned_cols=35 Identities=17% Similarity=0.286 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhh
Q psy6538 117 KQLKHQLNEVQSRLDEANRTINDLDVARKKLIIET 151 (153)
Q Consensus 117 k~lE~ql~el~~k~ee~~r~~~el~~~~~rl~~E~ 151 (153)
..+|.++..+-..+.++...+.++-...+.|+-||
T Consensus 11 ~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN 45 (110)
T PRK13169 11 DDLEQNLGVLLKELGALKKQLAELLEENTALRLEN 45 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555555555555555554
No 102
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=33.35 E-value=3.9e+02 Score=24.68 Aligned_cols=42 Identities=17% Similarity=0.146 Sum_probs=29.2
Q ss_pred HhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhh
Q psy6538 109 EATTEKVLKQLKHQLNEVQSRLDEANRTINDLDVARKKLIIE 150 (153)
Q Consensus 109 k~~~ek~~k~lE~ql~el~~k~ee~~r~~~el~~~~~rl~~E 150 (153)
+-+.......+..+|++.-..++.+.+.+.-.+...+.+..+
T Consensus 449 ~~~~~~~i~~l~~eLse~pinm~~v~~~v~~a~~~m~~l~~~ 490 (570)
T COG4477 449 FFTAGHEIQDLMKELSEVPINMEAVSALVDIATEDMNTLEDE 490 (570)
T ss_pred HHhhhhHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 555666677777888877777777777776666666666554
No 103
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=32.62 E-value=2.7e+02 Score=22.48 Aligned_cols=35 Identities=37% Similarity=0.494 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHH
Q psy6538 5 IYELEEEVEVERQSRAKAEKQRADLARELEELGER 39 (153)
Q Consensus 5 i~eLeeeLe~Er~~R~k~Ek~r~dl~~eLe~l~~~ 39 (153)
|.+.+.+|-.=|...+++=-...-+.++|+.+..+
T Consensus 33 ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~ 67 (225)
T COG1842 33 IRDMESELAKARQALAQAIARQKQLERKLEEAQAR 67 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444444444333
No 104
>KOG0250|consensus
Probab=31.82 E-value=5.4e+02 Score=25.79 Aligned_cols=21 Identities=24% Similarity=0.520 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHhHHHHHHH
Q psy6538 115 VLKQLKHQLNEVQSRLDEANR 135 (153)
Q Consensus 115 ~~k~lE~ql~el~~k~ee~~r 135 (153)
.+.+++.++..|..++++...
T Consensus 409 evek~e~~~~~L~~e~~~~~~ 429 (1074)
T KOG0250|consen 409 EVEKLEEQINSLREELNEVKE 429 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444433
No 105
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=31.69 E-value=1e+02 Score=27.30 Aligned_cols=36 Identities=11% Similarity=0.235 Sum_probs=13.7
Q ss_pred HhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy6538 109 EATTEKVLKQLKHQLNEVQSRLDEANRTINDLDVAR 144 (153)
Q Consensus 109 k~~~ek~~k~lE~ql~el~~k~ee~~r~~~el~~~~ 144 (153)
+-.+.+.|+....++.-+...+......+..+....
T Consensus 234 kDV~~RgvRp~~~qle~v~kdi~~a~~~L~~m~~~i 269 (424)
T PF03915_consen 234 KDVVQRGVRPSPKQLETVAKDISRASKELKKMKEYI 269 (424)
T ss_dssp HHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444433
No 106
>KOG0995|consensus
Probab=31.22 E-value=4.3e+02 Score=24.52 Aligned_cols=69 Identities=16% Similarity=0.265 Sum_probs=43.1
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHhcCccHHHHHHhHhHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhh
Q psy6538 18 SRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRRDLEEANIQHESTLANLRKKHN 87 (153)
Q Consensus 18 ~R~k~Ek~r~dl~~eLe~l~~~Lee~~~~t~aq~el~~krE~e~~~Lrr~Lee~~~~~e~~~~~lrkkh~ 87 (153)
+..+.++...++..+++.|.....+....-. -.+...-++.-+.+.++.|....--..+.++.|..+..
T Consensus 222 lk~~l~~~~~~i~~~ie~l~~~n~~l~e~i~-e~ek~~~~~eslre~~~~L~~D~nK~~~y~~~~~~k~~ 290 (581)
T KOG0995|consen 222 LKHRLEKYFTSIANEIEDLKKTNRELEEMIN-EREKDPGKEESLREKKARLQDDVNKFQAYVSQMKSKKQ 290 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCcchHHHHHHHHHHHHhHHHHHHHHHHHHHhhhH
Confidence 3457777888888888888776544422222 11222336666666777777777777777777776653
No 107
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=30.12 E-value=2.1e+02 Score=20.59 Aligned_cols=61 Identities=25% Similarity=0.399 Sum_probs=29.7
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHhcCccHHHHHHhHhHHHHHHHHHHHHHHHHhhhHHHHHHHHhh
Q psy6538 21 KAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRRDLEEANIQHESTLANLRKK 85 (153)
Q Consensus 21 k~Ek~r~dl~~eLe~l~~~Lee~~~~t~aq~el~~krE~e~~~Lrr~Lee~~~~~e~~~~~lrkk 85 (153)
..+-.+.++...|..|...|+.. ...+-++-+.|+. +...-..|.....+....+..|..+
T Consensus 6 ~l~as~~el~n~La~Le~slE~~---K~S~~eL~kqkd~-L~~~l~~L~~q~~s~~qr~~eLqak 66 (107)
T PF09304_consen 6 ALEASQNELQNRLASLERSLEDE---KTSQGELAKQKDQ-LRNALQSLQAQNASRNQRIAELQAK 66 (107)
T ss_dssp --------HHHHHHHHHHHHHHH---HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHHHHH---HhhHHHHHHhHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445556666666666665543 5566666555555 5555555555555555555555544
No 108
>KOG0250|consensus
Probab=29.91 E-value=5.8e+02 Score=25.58 Aligned_cols=35 Identities=20% Similarity=0.364 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhh
Q psy6538 117 KQLKHQLNEVQSRLDEANRTINDLDVARKKLIIET 151 (153)
Q Consensus 117 k~lE~ql~el~~k~ee~~r~~~el~~~~~rl~~E~ 151 (153)
+.+..++.+...+++.+...+..+..+..+|..+.
T Consensus 390 ~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~ 424 (1074)
T KOG0250|consen 390 NELGSELEERENKLEQLKKEVEKLEEQINSLREEL 424 (1074)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555666666666666666666666665553
No 109
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=29.85 E-value=3.3e+02 Score=22.68 Aligned_cols=87 Identities=23% Similarity=0.308 Sum_probs=45.9
Q ss_pred HhHHHHHHHHHHHHHHHHHhcCccHHHHHHhHh---HHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhhHHHHHHHHHHHH
Q psy6538 24 KQRADLARELEELGERLEEAGGATSAQIELNKK---REAEMSKLRRDLEEANIQHESTLANLRKKHNDAVSEMGEQIDQL 100 (153)
Q Consensus 24 k~r~dl~~eLe~l~~~Lee~~~~t~aq~el~~k---rE~e~~~Lrr~Lee~~~~~e~~~~~lrkkh~~~v~el~eqie~l 100 (153)
|.-+.|+.++......|-+..|.-.-.-+.+.+ |-.++..+-+.+..+...-.. .+..+..+|+++
T Consensus 120 k~~R~Laseit~~GA~LydlL~kE~~lr~~R~~a~~r~~e~~~iE~~l~~ai~~~~~-----------~~~~~~~~l~~l 188 (267)
T PF10234_consen 120 KAARQLASEITQRGASLYDLLGKEVELREERQRALARPLELNEIEKALKEAIKAVQQ-----------QLQQTQQQLNNL 188 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhchHhHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHH
Confidence 345667788888888888887776644333322 333444444444444433333 334444444444
Q ss_pred hhhhhhHH------HhhhHHHHHHHHH
Q psy6538 101 NKLKTNKE------EATTEKVLKQLKH 121 (153)
Q Consensus 101 qr~k~klE------k~~~ek~~k~lE~ 121 (153)
..-...|+ |.++|+..|.|.+
T Consensus 189 ~~de~~Le~KIekkk~ELER~qKRL~s 215 (267)
T PF10234_consen 189 ASDEANLEAKIEKKKQELERNQKRLQS 215 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44433333 4555555555543
No 110
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=29.52 E-value=5.1e+02 Score=24.81 Aligned_cols=77 Identities=30% Similarity=0.359 Sum_probs=51.5
Q ss_pred hhHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHhcCccHHHHHHhHhHHHHHHHHHHHHHHHH------hhh
Q psy6538 2 QARIYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRRDLEEAN------IQH 75 (153)
Q Consensus 2 q~~i~eLeeeLe~Er~~R~k~Ek~r~dl~~eLe~l~~~Lee~~~~t~aq~el~~krE~e~~~Lrr~Lee~~------~~~ 75 (153)
++-|..|++-|-.|..--.+.+-+..-|.-+|..-+..|++.. ......+-++..|+..|++-. -+.
T Consensus 355 qtti~~L~~lL~~Eqqr~~~~ed~lk~l~~eLqkks~eleEmt-------k~k~~ke~eleeL~~~L~e~qkll~ekk~~ 427 (786)
T PF05483_consen 355 QTTICNLKELLTTEQQRLKKNEDQLKILTMELQKKSSELEEMT-------KQKNNKEVELEELKKILAEKQKLLDEKKQF 427 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhHHHHHHH-------HHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888888888877666777777777788888777777652 344456666777777777665 444
Q ss_pred HHHHHHHHhh
Q psy6538 76 ESTLANLRKK 85 (153)
Q Consensus 76 e~~~~~lrkk 85 (153)
+.....|.-.
T Consensus 428 eki~E~lq~~ 437 (786)
T PF05483_consen 428 EKIAEELQGT 437 (786)
T ss_pred HHHHHHHHHH
Confidence 4444444433
No 111
>KOG0804|consensus
Probab=29.39 E-value=4.3e+02 Score=23.92 Aligned_cols=43 Identities=12% Similarity=0.188 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHhcCccHHHHHHhHhHHHHHHHHHHHHHHHH
Q psy6538 30 ARELEELGERLEEAGGATSAQIELNKKREAEMSKLRRDLEEAN 72 (153)
Q Consensus 30 ~~eLe~l~~~Lee~~~~t~aq~el~~krE~e~~~Lrr~Lee~~ 72 (153)
..+..+++..+.+.......--....++..-+.++.+++....
T Consensus 360 ~~e~~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~ 402 (493)
T KOG0804|consen 360 ITEADSLKQESSDLEAEKKIVERKLQQLQTKLKKCQKELKEER 402 (493)
T ss_pred HHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444433333333344455566666666665555
No 112
>KOG0971|consensus
Probab=28.80 E-value=6e+02 Score=25.39 Aligned_cols=33 Identities=33% Similarity=0.436 Sum_probs=19.3
Q ss_pred HHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHh
Q psy6538 11 EVEVERQSRAKAEKQRADLARELEELGERLEEA 43 (153)
Q Consensus 11 eLe~Er~~R~k~Ek~r~dl~~eLe~l~~~Lee~ 43 (153)
+++.--.+|.|.=-+..+|.++|-.-+....++
T Consensus 263 qleqlqEfkSkim~qqa~Lqrel~raR~e~kea 295 (1243)
T KOG0971|consen 263 QLEQLQEFKSKIMEQQADLQRELKRARKEAKEA 295 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555566666666666666666555554444
No 113
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=28.76 E-value=4.5e+02 Score=23.89 Aligned_cols=22 Identities=14% Similarity=0.202 Sum_probs=9.3
Q ss_pred HHHHHHhHHHHHHHHHHHHHHH
Q psy6538 122 QLNEVQSRLDEANRTINDLDVA 143 (153)
Q Consensus 122 ql~el~~k~ee~~r~~~el~~~ 143 (153)
++.++...++.+.....++...
T Consensus 477 e~~e~~~~~~~L~~q~~dL~~~ 498 (569)
T PRK04778 477 LLEEATEDVETLEEETEELVEN 498 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444433
No 114
>PRK14011 prefoldin subunit alpha; Provisional
Probab=28.06 E-value=2.6e+02 Score=20.95 Aligned_cols=39 Identities=23% Similarity=0.396 Sum_probs=20.1
Q ss_pred hhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh
Q psy6538 111 TTEKVLKQLKHQLNEVQSRLDEANRTINDLDVARKKLII 149 (153)
Q Consensus 111 ~~ek~~k~lE~ql~el~~k~ee~~r~~~el~~~~~rl~~ 149 (153)
..+.....++..+.++....+.+...+.+++.....++.
T Consensus 85 ~~~eA~~~~~~ri~~l~~~~~~l~~~i~~~~~~~~~l~~ 123 (144)
T PRK14011 85 DVSEVIEDFKKSVEELDKTKKEGNKKIEELNKEITKLRK 123 (144)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555555555555555555555443
No 115
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=27.61 E-value=3.1e+02 Score=21.69 Aligned_cols=22 Identities=14% Similarity=0.367 Sum_probs=10.0
Q ss_pred hhHHHHHHHHHHHHHHHhHHHH
Q psy6538 111 TTEKVLKQLKHQLNEVQSRLDE 132 (153)
Q Consensus 111 ~~ek~~k~lE~ql~el~~k~ee 132 (153)
..+..|..++.++..++.+..+
T Consensus 193 eie~a~~~Le~ei~~l~~~~~~ 214 (221)
T PF05700_consen 193 EIEVACEELEQEIEQLKRKAAE 214 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444433
No 116
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=26.93 E-value=3.8e+02 Score=22.42 Aligned_cols=53 Identities=25% Similarity=0.254 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHhcCccHHHHHHhHhHHHHHHHHHHHHHHHHhhhHHHHHHHHh
Q psy6538 31 RELEELGERLEEAGGATSAQIELNKKREAEMSKLRRDLEEANIQHESTLANLRK 84 (153)
Q Consensus 31 ~eLe~l~~~Lee~~~~t~aq~el~~krE~e~~~Lrr~Lee~~~~~e~~~~~lrk 84 (153)
-+++||+..|++...+...- +....++.+.....|.++......+.....|+.
T Consensus 166 vkV~WLR~~L~Ei~Ea~e~~-~~~~~~e~eke~~~r~l~~~~~ELe~~~EeL~~ 218 (269)
T PF05278_consen 166 VKVDWLRSKLEEILEAKEIY-DQHETREEEKEEKDRKLELKKEELEELEEELKQ 218 (269)
T ss_pred cchHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57888888888865332111 112335555555556665555444444444443
No 117
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=26.70 E-value=1.7e+02 Score=18.31 Aligned_cols=18 Identities=39% Similarity=0.674 Sum_probs=14.1
Q ss_pred hHHHHHHHHHHHHHhHHH
Q psy6538 3 ARIYELEEEVEVERQSRA 20 (153)
Q Consensus 3 ~~i~eLeeeLe~Er~~R~ 20 (153)
.+|.||+--|-+||..|.
T Consensus 4 ~Rl~ELe~klkaerE~R~ 21 (52)
T PF12808_consen 4 LRLEELERKLKAEREARS 21 (52)
T ss_pred HHHHHHHHHHHHhHHhcc
Confidence 578899988888887654
No 118
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=26.62 E-value=3.4e+02 Score=21.84 Aligned_cols=45 Identities=18% Similarity=0.257 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHhcCccHHHHHHhHhHHHHHHHHHHHHHHHH
Q psy6538 28 DLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRRDLEEAN 72 (153)
Q Consensus 28 dl~~eLe~l~~~Lee~~~~t~aq~el~~krE~e~~~Lrr~Lee~~ 72 (153)
-|..-+.++...|..+..+.+.++...+.-+.++..+....+..-
T Consensus 28 ~l~Q~ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e 72 (225)
T COG1842 28 MLEQAIRDMESELAKARQALAQAIARQKQLERKLEEAQARAEKLE 72 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555556666666666666666665555544
No 119
>KOG3156|consensus
Probab=26.62 E-value=3.5e+02 Score=21.94 Aligned_cols=56 Identities=23% Similarity=0.362 Sum_probs=32.8
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHH-------------------HHhcCccHHHHHHhHhHHHHHHHHHHHHHHHHh
Q psy6538 18 SRAKAEKQRADLARELEELGERL-------------------EEAGGATSAQIELNKKREAEMSKLRRDLEEANI 73 (153)
Q Consensus 18 ~R~k~Ek~r~dl~~eLe~l~~~L-------------------ee~~~~t~aq~el~~krE~e~~~Lrr~Lee~~~ 73 (153)
.|+-.||-+.|+.+=-..|.+++ +++...+..-.++..|=++|+..|+.+++....
T Consensus 121 lr~e~EklkndlEk~ks~lr~ei~~~~a~~rLdLNLEkgr~~d~~~~~~l~~~e~s~kId~Ev~~lk~qi~s~K~ 195 (220)
T KOG3156|consen 121 LRAENEKLKNDLEKLKSSLRHEISKTTAEFRLDLNLEKGRIKDESSSHDLQIKEISTKIDQEVTNLKTQIESVKT 195 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcchhceeecchhhccccchhhhcchhHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555444444443 333334444556677777788888877777653
No 120
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=26.34 E-value=3e+02 Score=21.14 Aligned_cols=42 Identities=24% Similarity=0.283 Sum_probs=22.7
Q ss_pred hhhHHHHHHHHHHHHHHHhHHHHHHHHHHHH-------HHHHHHHHhhh
Q psy6538 110 ATTEKVLKQLKHQLNEVQSRLDEANRTINDL-------DVARKKLIIET 151 (153)
Q Consensus 110 ~~~ek~~k~lE~ql~el~~k~ee~~r~~~el-------~~~~~rl~~E~ 151 (153)
..++..++.++..+.+...-++.+...+..+ ..+..+|+.||
T Consensus 126 ~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En 174 (194)
T PF08614_consen 126 AQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEEN 174 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556666666666655555555444444 44445555554
No 121
>PHA02682 ORF080 virion core protein; Provisional
Probab=26.16 E-value=68 Score=25.95 Aligned_cols=27 Identities=30% Similarity=0.462 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHhhh
Q psy6538 60 EMSKLRRDLEEANIQHESTLANLRKKH 86 (153)
Q Consensus 60 e~~~Lrr~Lee~~~~~e~~~~~lrkkh 86 (153)
|-..|-++++.+....-.+|..||...
T Consensus 230 eS~~LtrDIE~AKstTq~AIdDLRrLl 256 (280)
T PHA02682 230 ESLSLTRDIENAKSTTQAAIDDLRRLL 256 (280)
T ss_pred hhhhhHHHHHHHHhhHHHHHHHHHHHH
Confidence 334445555555555555555555443
No 122
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=25.88 E-value=1.8e+02 Score=18.41 Aligned_cols=36 Identities=25% Similarity=0.387 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHH
Q psy6538 5 IYELEEEVEVERQSRAKAEKQRADLARELEELGERL 40 (153)
Q Consensus 5 i~eLeeeLe~Er~~R~k~Ek~r~dl~~eLe~l~~~L 40 (153)
|.+|+.++..=-..=..+.++-.+++..++.+.+.+
T Consensus 2 i~elEn~~~~~~~~i~tvk~en~~i~~~ve~i~env 37 (55)
T PF05377_consen 2 IDELENELPRIESSINTVKKENEEISESVEKIEENV 37 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666654333333344444455555555555444
No 123
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=25.55 E-value=4.1e+02 Score=22.42 Aligned_cols=10 Identities=30% Similarity=0.517 Sum_probs=3.8
Q ss_pred HHHHHHHHHH
Q psy6538 58 EAEMSKLRRD 67 (153)
Q Consensus 58 E~e~~~Lrr~ 67 (153)
..++..|++.
T Consensus 185 ~~e~~~L~~~ 194 (312)
T smart00787 185 EEELRQLKQL 194 (312)
T ss_pred HHHHHHHHHh
Confidence 3333333333
No 124
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=25.49 E-value=1.6e+02 Score=17.65 Aligned_cols=28 Identities=14% Similarity=0.287 Sum_probs=10.7
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q psy6538 119 LKHQLNEVQSRLDEANRTINDLDVARKK 146 (153)
Q Consensus 119 lE~ql~el~~k~ee~~r~~~el~~~~~r 146 (153)
|-.....+...++-+......|.+.+..
T Consensus 10 LK~~yd~Lk~~~~~L~~E~~~L~aev~~ 37 (45)
T PF02183_consen 10 LKASYDSLKAEYDSLKKENEKLRAEVQE 37 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333344443333333333333333
No 125
>KOG0999|consensus
Probab=25.40 E-value=5.7e+02 Score=24.02 Aligned_cols=80 Identities=26% Similarity=0.331 Sum_probs=51.8
Q ss_pred hHhHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhhHHHHHHHHHHHHhhhhhhHH---------HhhhHHHHHHHHHHHH
Q psy6538 54 NKKREAEMSKLRRDLEEANIQHESTLANLRKKHNDAVSEMGEQIDQLNKLKTNKE---------EATTEKVLKQLKHQLN 124 (153)
Q Consensus 54 ~~krE~e~~~Lrr~Lee~~~~~e~~~~~lrkkh~~~v~el~eqie~lqr~k~klE---------k~~~ek~~k~lE~ql~ 124 (153)
..||++ +..||-.|-.-...-+.++++||.|+-..-.-+++-++.+.+--..|. ++.+-..|.-+-.|+-
T Consensus 615 stkreq-i~tlrtvlkankqtaevaltnlksKYEnEK~mvtetm~KlRnELk~Lkedaatfsslramf~~R~ee~~tq~d 693 (772)
T KOG0999|consen 615 STKREQ-ITTLRTVLKANKQTAEVALTNLKSKYENEKAMVTETMDKLRNELKALKEDAATFSSLRAMFAARCEEYVTQLD 693 (772)
T ss_pred HHHHHH-HHHHHHHHHHhHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence 456665 778888888888888899999999987655556666665544333333 5555555666666666
Q ss_pred HHHhHHHHHH
Q psy6538 125 EVQSRLDEAN 134 (153)
Q Consensus 125 el~~k~ee~~ 134 (153)
+++..+.-.+
T Consensus 694 e~~~ql~aae 703 (772)
T KOG0999|consen 694 ELQRQLAAAE 703 (772)
T ss_pred HHHHHHHhhh
Confidence 6655544333
No 126
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=25.35 E-value=3.3e+02 Score=21.17 Aligned_cols=13 Identities=46% Similarity=0.675 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHh
Q psy6538 5 IYELEEEVEVERQ 17 (153)
Q Consensus 5 i~eLeeeLe~Er~ 17 (153)
|.+|+..++..+.
T Consensus 85 i~~l~~~i~~~~~ 97 (188)
T PF03962_consen 85 IEELEEKIEEAKK 97 (188)
T ss_pred HHHHHHHHHHHHh
Confidence 4444444444433
No 127
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=25.22 E-value=4.9e+02 Score=23.18 Aligned_cols=30 Identities=27% Similarity=0.299 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q psy6538 116 LKQLKHQLNEVQSRLDEANRTINDLDVARK 145 (153)
Q Consensus 116 ~k~lE~ql~el~~k~ee~~r~~~el~~~~~ 145 (153)
...++.++..-+.+++++...-..|...+.
T Consensus 212 ~~~l~~~l~~~q~~l~eL~~~~~~L~~~Ia 241 (420)
T COG4942 212 LAQLNSELSADQKKLEELRANESRLKNEIA 241 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 334444444444444444444333333333
No 128
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=25.19 E-value=4.2e+02 Score=22.42 Aligned_cols=96 Identities=23% Similarity=0.317 Sum_probs=57.2
Q ss_pred HhHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhhHHHHHHHHHHHHhhhhhhHH--HhhhHHHHHHH-------HHHHHH
Q psy6538 55 KKREAEMSKLRRDLEEANIQHESTLANLRKKHNDAVSEMGEQIDQLNKLKTNKE--EATTEKVLKQL-------KHQLNE 125 (153)
Q Consensus 55 ~krE~e~~~Lrr~Lee~~~~~e~~~~~lrkkh~~~v~el~eqie~lqr~k~klE--k~~~ek~~k~l-------E~ql~e 125 (153)
..-|..+.+|+++-.--..+-+..-++|-|-.. .+.+-...+-.|+|-.+.|= --++++.+.++ |.++..
T Consensus 21 qelE~QldkLkKE~qQrQfQleSlEAaLqKQKq-K~e~ek~e~s~LkREnq~l~e~c~~lek~rqKlshdlq~Ke~qv~~ 99 (307)
T PF10481_consen 21 QELEQQLDKLKKERQQRQFQLESLEAALQKQKQ-KVEEEKNEYSALKRENQSLMESCENLEKTRQKLSHDLQVKESQVNF 99 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH-HHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHhhHHHhhhHHHHHH
Confidence 446777888888877777777766666643332 33444444455555544433 22344444444 556666
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHhhh
Q psy6538 126 VQSRLDEANRTINDLDVARKKLIIET 151 (153)
Q Consensus 126 l~~k~ee~~r~~~el~~~~~rl~~E~ 151 (153)
+...+.-....+.-++.-+.++.+|+
T Consensus 100 lEgQl~s~Kkqie~Leqelkr~KsEL 125 (307)
T PF10481_consen 100 LEGQLNSCKKQIEKLEQELKRCKSEL 125 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66677777777777777777766665
No 129
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=25.15 E-value=2e+02 Score=25.98 Aligned_cols=14 Identities=14% Similarity=0.214 Sum_probs=8.3
Q ss_pred hHHHHHHHHHHHHH
Q psy6538 56 KREAEMSKLRRDLE 69 (153)
Q Consensus 56 krE~e~~~Lrr~Le 69 (153)
..++++..|+.+++
T Consensus 108 eLEaE~~~Lk~Ql~ 121 (475)
T PRK13729 108 KLGQDNAALAEQVK 121 (475)
T ss_pred HHHHHHHHHHHHHH
Confidence 45556666666664
No 130
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=24.97 E-value=3.2e+02 Score=20.99 Aligned_cols=35 Identities=17% Similarity=0.360 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhh
Q psy6538 116 LKQLKHQLNEVQSRLDEANRTINDLDVARKKLIIE 150 (153)
Q Consensus 116 ~k~lE~ql~el~~k~ee~~r~~~el~~~~~rl~~E 150 (153)
...+...+..+..++.+....+.+.......++.|
T Consensus 118 l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE 152 (194)
T PF08614_consen 118 LAELEAELAQLEEKIKDLEEELKEKNKANEILQDE 152 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444
No 131
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=24.85 E-value=24 Score=32.86 Aligned_cols=10 Identities=30% Similarity=0.537 Sum_probs=0.0
Q ss_pred HHHHHHHHhh
Q psy6538 76 ESTLANLRKK 85 (153)
Q Consensus 76 e~~~~~lrkk 85 (153)
|..+...|+|
T Consensus 314 E~~ve~YKkK 323 (713)
T PF05622_consen 314 ENEVEKYKKK 323 (713)
T ss_dssp ----------
T ss_pred HHHHHHHHHH
Confidence 3344444443
No 132
>PF15294 Leu_zip: Leucine zipper
Probab=24.83 E-value=4.2e+02 Score=22.25 Aligned_cols=48 Identities=25% Similarity=0.345 Sum_probs=37.0
Q ss_pred HHHhHHHHHHHHHHHHHHHHHhcCccHHHHHHhHhHHHHHHHHHHHHH
Q psy6538 22 AEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRRDLE 69 (153)
Q Consensus 22 ~Ek~r~dl~~eLe~l~~~Lee~~~~t~aq~el~~krE~e~~~Lrr~Le 69 (153)
.-+....|..|.+.|+++|-.....++.-.+=+++-++.+..|+....
T Consensus 130 l~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~~~~ 177 (278)
T PF15294_consen 130 LNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQDEQG 177 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446677888888888888888777777777778888888888877333
No 133
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=24.82 E-value=4.5e+02 Score=22.64 Aligned_cols=138 Identities=20% Similarity=0.265 Sum_probs=77.0
Q ss_pred HHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHhcCccHHHHHHhHhHHHHHHHHHHHHHHHHhhhHHHHHHHHh
Q psy6538 5 IYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRRDLEEANIQHESTLANLRK 84 (153)
Q Consensus 5 i~eLeeeLe~Er~~R~k~Ek~r~dl~~eLe~l~~~Lee~~~~t~aq~el~~krE~e~~~Lrr~Lee~~~~~e~~~~~lrk 84 (153)
|..-+.++.+...+|..+.........+|..-....+. .-++|-.++...+..|+-....-...|..+-+
T Consensus 210 i~~a~~e~~~S~~LR~~i~~~l~~~~~dl~~Q~~~vn~----------al~~Ri~et~~ak~~Le~ql~~~~~ei~~~e~ 279 (384)
T PF03148_consen 210 IQRAEKERQSSAQLREDIDSILEQTANDLRAQADAVNA----------ALRKRIHETQEAKNELEWQLKKTLQEIAEMEK 279 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 33444455555555555555555444444443333322 23556666666666666655444444443333
Q ss_pred hhhhHHHHHHHHHHHHhhhhhhHH---------------HhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh
Q psy6538 85 KHNDAVSEMGEQIDQLNKLKTNKE---------------EATTEKVLKQLKHQLNEVQSRLDEANRTINDLDVARKKLII 149 (153)
Q Consensus 85 kh~~~v~el~eqie~lqr~k~klE---------------k~~~ek~~k~lE~ql~el~~k~ee~~r~~~el~~~~~rl~~ 149 (153)
--..-=..+.+....++-+-..|+ -..+-.-++.+...+..|+.++.+.+..+..|.....+|..
T Consensus 280 ~i~~L~~ai~~k~~~lkvaqTRL~~R~~RP~vElcrD~~q~~L~~Ev~~l~~~i~~L~~~L~~a~~~l~~L~~~~~~Le~ 359 (384)
T PF03148_consen 280 NIEDLEKAIRDKEGPLKVAQTRLENRTQRPNVELCRDPPQYGLIEEVKELRESIEALQEKLDEAEASLQKLERTRLRLEE 359 (384)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHhhHhcCCchHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222222333333334444444444 11222336778888899999999999999999999988887
Q ss_pred hhc
Q psy6538 150 ETT 152 (153)
Q Consensus 150 E~~ 152 (153)
++.
T Consensus 360 di~ 362 (384)
T PF03148_consen 360 DIA 362 (384)
T ss_pred HHH
Confidence 753
No 134
>KOG4348|consensus
Probab=23.96 E-value=5.4e+02 Score=23.44 Aligned_cols=45 Identities=29% Similarity=0.386 Sum_probs=23.7
Q ss_pred HhHHHHHHHhHHHHHHHHHHHHHHHHHhcCccHHHHHHhHhHHHHHHHHHHH
Q psy6538 16 RQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRRD 67 (153)
Q Consensus 16 r~~R~k~Ek~r~dl~~eLe~l~~~Lee~~~~t~aq~el~~krE~e~~~Lrr~ 67 (153)
+.++.-+|.-+.|-.+||+.|...|++- .-++...+.|+.+|++.
T Consensus 579 ~el~~ive~lk~~~~kel~kl~~dleee-------k~mr~~lemei~~lkka 623 (627)
T KOG4348|consen 579 IELLCIVEALKKDHGKELEKLRKDLEEE-------KTMRSNLEMEIEKLKKA 623 (627)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHhhhHhhHHHHHHH
Confidence 3445555555666666666666666543 12334445555555543
No 135
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=23.63 E-value=5.6e+02 Score=23.29 Aligned_cols=84 Identities=19% Similarity=0.298 Sum_probs=37.7
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHhcCccHHHHHHhHhHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhhHHHHHHHHHHHH
Q psy6538 21 KAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRRDLEEANIQHESTLANLRKKHNDAVSEMGEQIDQL 100 (153)
Q Consensus 21 k~Ek~r~dl~~eLe~l~~~Lee~~~~t~aq~el~~krE~e~~~Lrr~Lee~~~~~e~~~~~lrkkh~~~v~el~eqie~l 100 (153)
++-+.-.++...|+.+.+++......-.-..+.-.+--.++..|+....... ..+.+-+-.+..++..|..+++++
T Consensus 98 ka~~~i~~~~~~l~~~e~~i~~i~~~l~~L~~~e~~nr~~i~~l~~~y~~lr----k~ll~~~~~~G~a~~~Le~~L~~i 173 (560)
T PF06160_consen 98 KAKQAIKEIEEQLDEIEEDIKEILDELDELLESEEKNREEIEELKEKYRELR----KELLAHSFSYGPAIEELEKQLENI 173 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHhhhhhchhHHHHHHHHHHH
Confidence 3333444444444444444433333333333333333333444443333333 333344444455666666666666
Q ss_pred hhhhhhHH
Q psy6538 101 NKLKTNKE 108 (153)
Q Consensus 101 qr~k~klE 108 (153)
...-.+.+
T Consensus 174 e~~F~~f~ 181 (560)
T PF06160_consen 174 EEEFSEFE 181 (560)
T ss_pred HHHHHHHH
Confidence 55555544
No 136
>COG4985 ABC-type phosphate transport system, auxiliary component [Inorganic ion transport and metabolism]
Probab=23.40 E-value=4.3e+02 Score=21.93 Aligned_cols=58 Identities=19% Similarity=0.253 Sum_probs=25.2
Q ss_pred hhhhhHHHHHHHHHHHHhhhhhhHH---HhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q psy6538 84 KKHNDAVSEMGEQIDQLNKLKTNKE---EATTEKVLKQLKHQLNEVQSRLDEANRTINDLDV 142 (153)
Q Consensus 84 kkh~~~v~el~eqie~lqr~k~klE---k~~~ek~~k~lE~ql~el~~k~ee~~r~~~el~~ 142 (153)
+.....+.-++.+++.|.=.|.++- +...+.. ..+....++++.++.-++-.++.+.+
T Consensus 182 k~~~~qv~~in~qlErLRL~krrlQl~g~Ld~~~q-~~~~ae~seLq~r~~~l~~~L~~L~~ 242 (289)
T COG4985 182 KMVEQQVRVINSQLERLRLEKRRLQLNGQLDDEFQ-QHYVAEKSELQKRLAQLQTELDALRA 242 (289)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3334556666666665544333333 2222211 12333444444444444444443333
No 137
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=23.05 E-value=2.3e+02 Score=18.54 Aligned_cols=19 Identities=11% Similarity=0.368 Sum_probs=12.2
Q ss_pred hHHHHHHHHHHHHhhhhhh
Q psy6538 88 DAVSEMGEQIDQLNKLKTN 106 (153)
Q Consensus 88 ~~v~el~eqie~lqr~k~k 106 (153)
..+..|.+.++.+.+--+.
T Consensus 5 a~~~~Lr~rLd~~~rk~~~ 23 (69)
T PF14197_consen 5 AEIATLRNRLDSLTRKNSV 23 (69)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3567777777776664443
No 138
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=23.00 E-value=6.9e+02 Score=24.08 Aligned_cols=27 Identities=26% Similarity=0.361 Sum_probs=19.7
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHH
Q psy6538 122 QLNEVQSRLDEANRTINDLDVARKKLI 148 (153)
Q Consensus 122 ql~el~~k~ee~~r~~~el~~~~~rl~ 148 (153)
.|.-+-.|+.|.+.+|..|..|+.-|.
T Consensus 734 EiaaAA~KLAECQeTI~sLGkQLksLa 760 (769)
T PF05911_consen 734 EIAAAAEKLAECQETIASLGKQLKSLA 760 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 344556678888888888888877664
No 139
>KOG2991|consensus
Probab=22.91 E-value=4.7e+02 Score=22.09 Aligned_cols=51 Identities=20% Similarity=0.253 Sum_probs=32.9
Q ss_pred HHHHHHHhcCccHHHHHHhHhHHHHHHHHHHHHHHHHhhhHHHHHHHHhhh
Q psy6538 36 LGERLEEAGGATSAQIELNKKREAEMSKLRRDLEEANIQHESTLANLRKKH 86 (153)
Q Consensus 36 l~~~Lee~~~~t~aq~el~~krE~e~~~Lrr~Lee~~~~~e~~~~~lrkkh 86 (153)
|+.++.++.---..-+---.++|.|+..+.-.+.......-+++..+|.--
T Consensus 120 lkqQ~~~a~RrE~ilv~rlA~kEQEmqe~~sqi~~lK~qq~Ps~~qlR~~l 170 (330)
T KOG2991|consen 120 LKQQQQEAARRENILVMRLATKEQEMQECTSQIQYLKQQQQPSVAQLRSTL 170 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHh
Confidence 444455554444444444466788888888888877777777777777554
No 140
>KOG2264|consensus
Probab=22.83 E-value=3.9e+02 Score=25.22 Aligned_cols=38 Identities=18% Similarity=0.354 Sum_probs=19.4
Q ss_pred hhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q psy6538 110 ATTEKVLKQLKHQLNEVQSRLDEANRTINDLDVARKKL 147 (153)
Q Consensus 110 ~~~ek~~k~lE~ql~el~~k~ee~~r~~~el~~~~~rl 147 (153)
..++.++..+-+.+.+++.|+++.++.+-.-..-+.+|
T Consensus 96 ~ele~krqel~seI~~~n~kiEelk~~i~~~q~eL~~L 133 (907)
T KOG2264|consen 96 TELEVKRQELNSEIEEINTKIEELKRLIPQKQLELSAL 133 (907)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 34444555555555566666665555554443333333
No 141
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=22.79 E-value=6.9e+02 Score=24.05 Aligned_cols=49 Identities=22% Similarity=0.144 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHhcCccHHHHH
Q psy6538 4 RIYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIE 52 (153)
Q Consensus 4 ~i~eLeeeLe~Er~~R~k~Ek~r~dl~~eLe~l~~~Lee~~~~t~aq~e 52 (153)
+|.+|.--|+.+=....-+--...||..-++++..-|+-....-..-++
T Consensus 510 kIsEfv~~LekeVh~C~DLLsgkadLE~fieE~s~tLdwIls~~~SLqD 558 (769)
T PF05911_consen 510 KISEFVLVLEKEVHVCQDLLSGKADLERFIEEFSLTLDWILSNCFSLQD 558 (769)
T ss_pred hHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHccchHHH
Confidence 4555555555554444444455666677777777666666555444444
No 142
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=22.44 E-value=29 Score=32.37 Aligned_cols=13 Identities=15% Similarity=0.504 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHh
Q psy6538 89 AVSEMGEQIDQLN 101 (153)
Q Consensus 89 ~v~el~eqie~lq 101 (153)
.+..|.+++|-+.
T Consensus 292 ~a~~LrDElD~lR 304 (713)
T PF05622_consen 292 EARALRDELDELR 304 (713)
T ss_dssp -------------
T ss_pred HHHHHhhhHHHHH
Confidence 3344455555443
No 143
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=21.69 E-value=4e+02 Score=20.91 Aligned_cols=36 Identities=22% Similarity=0.404 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHH
Q psy6538 5 IYELEEEVEVERQSRAKAEKQRADLARELEELGERL 40 (153)
Q Consensus 5 i~eLeeeLe~Er~~R~k~Ek~r~dl~~eLe~l~~~L 40 (153)
|.+++++|..-|..-+.+--...-+.+.++.+....
T Consensus 33 irem~~~l~~ar~~lA~~~a~~k~~e~~~~~~~~~~ 68 (219)
T TIGR02977 33 IQEMEDTLVEVRTTSARTIADKKELERRVSRLEAQV 68 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444433
No 144
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=21.45 E-value=3.9e+02 Score=20.68 Aligned_cols=43 Identities=21% Similarity=0.379 Sum_probs=19.2
Q ss_pred hHHHHHHHHHHHHhhhhhhHHHhhhHHHHHHHHHHHHHHHhHHHHHHH
Q psy6538 88 DAVSEMGEQIDQLNKLKTNKEEATTEKVLKQLKHQLNEVQSRLDEANR 135 (153)
Q Consensus 88 ~~v~el~eqie~lqr~k~klEk~~~ek~~k~lE~ql~el~~k~ee~~r 135 (153)
..+..+..+++.+...-.+ +......++..+.+++.+.+.+..
T Consensus 98 ~~~~~l~~~~~~~~~~~~~-----l~~~l~~l~~kl~e~k~k~~~l~a 140 (221)
T PF04012_consen 98 EQAERLEQQLDQAEAQVEK-----LKEQLEELEAKLEELKSKREELKA 140 (221)
T ss_pred HHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444443332 223334455555555555544433
No 145
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=21.43 E-value=6.2e+02 Score=22.99 Aligned_cols=39 Identities=28% Similarity=0.291 Sum_probs=32.8
Q ss_pred hhHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHH
Q psy6538 2 QARIYELEEEVEVERQSRAKAEKQRADLARELEELGERL 40 (153)
Q Consensus 2 q~~i~eLeeeLe~Er~~R~k~Ek~r~dl~~eLe~l~~~L 40 (153)
..+|..|=+.|+.|-.+|.-+++....+..-+..+....
T Consensus 284 ~~~Id~lYd~le~E~~Ak~~V~~~~~~l~~~l~~~~~~~ 322 (560)
T PF06160_consen 284 EERIDQLYDILEKEVEAKKYVEKNLKELYEYLEHAKEQN 322 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 457888999999999999999999888888877777654
No 146
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=21.09 E-value=5.1e+02 Score=21.86 Aligned_cols=29 Identities=17% Similarity=0.424 Sum_probs=12.6
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q psy6538 119 LKHQLNEVQSRLDEANRTINDLDVARKKL 147 (153)
Q Consensus 119 lE~ql~el~~k~ee~~r~~~el~~~~~rl 147 (153)
++.++..+..++++....+.++...+..+
T Consensus 230 ~~~~l~~l~~~I~~~~~~k~e~~~~I~~a 258 (312)
T smart00787 230 LEEELQELESKIEDLTNKKSELNTEIAEA 258 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444333
No 147
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=20.12 E-value=6.2e+02 Score=22.48 Aligned_cols=21 Identities=14% Similarity=0.332 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHhHHHHHHHH
Q psy6538 116 LKQLKHQLNEVQSRLDEANRT 136 (153)
Q Consensus 116 ~k~lE~ql~el~~k~ee~~r~ 136 (153)
.++|...-..+-.+++|++..
T Consensus 208 k~~L~~~sd~Ll~kVdDLQD~ 228 (424)
T PF03915_consen 208 KKKLSEESDRLLTKVDDLQDL 228 (424)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333
Done!