Query psy6538
Match_columns 153
No_of_seqs 105 out of 295
Neff 6.6
Searched_HMMs 29240
Date Fri Aug 16 20:35:23 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6538.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6538hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ocy_A RAB guanine nucleotide 96.9 0.018 6.2E-07 43.0 11.5 91 4-148 59-149 (154)
2 3ol1_A Vimentin; structural ge 96.0 0.2 6.7E-06 35.5 11.9 67 2-75 19-85 (119)
3 2eqb_B RAB guanine nucleotide 95.9 0.21 7.2E-06 34.4 11.2 41 3-43 26-66 (97)
4 1i84_S Smooth muscle myosin he 95.6 0.0021 7.1E-08 61.1 0.0 61 1-61 1121-1181(1184)
5 2e7s_A RAB guanine nucleotide 95.4 0.04 1.4E-06 40.3 6.2 39 4-42 47-85 (135)
6 3o0z_A RHO-associated protein 94.1 1.4 4.7E-05 33.2 18.1 72 1-72 11-82 (168)
7 2dfs_A Myosin-5A; myosin-V, in 93.0 3.9 0.00013 38.7 15.8 17 56-72 957-973 (1080)
8 1i84_S Smooth muscle myosin he 93.0 0.032 1.1E-06 53.0 1.7 14 4-17 893-906 (1184)
9 3swk_A Vimentin; cytoskeleton, 92.7 1.5 5.1E-05 29.2 10.8 83 5-102 2-84 (86)
10 2fxo_A Myosin heavy chain, car 92.2 2.2 7.6E-05 30.2 14.3 38 115-152 77-114 (129)
11 3ol1_A Vimentin; structural ge 91.3 1.7 5.8E-05 30.5 8.7 36 116-151 64-99 (119)
12 2dfs_A Myosin-5A; myosin-V, in 90.0 6.1 0.00021 37.4 13.7 13 2-14 927-939 (1080)
13 3na7_A HP0958; flagellar bioge 89.7 6.1 0.00021 30.8 18.2 23 86-108 88-110 (256)
14 1c1g_A Tropomyosin; contractIl 88.8 5.7 0.00019 29.3 19.7 33 6-38 23-55 (284)
15 2fxo_A Myosin heavy chain, car 87.0 6.3 0.00022 27.8 12.7 38 4-41 21-58 (129)
16 2efr_A General control protein 85.8 8.8 0.0003 28.3 16.0 42 110-151 73-114 (155)
17 1c1g_A Tropomyosin; contractIl 84.8 9.8 0.00034 28.0 20.6 28 119-146 242-269 (284)
18 3tnu_B Keratin, type II cytosk 81.1 12 0.00041 26.3 9.5 39 113-151 81-119 (129)
19 3tnu_A Keratin, type I cytoske 80.9 12 0.00042 26.3 9.5 39 113-151 83-121 (131)
20 2v4h_A NF-kappa-B essential mo 79.1 5.1 0.00017 28.0 5.7 39 2-40 68-106 (110)
21 3mq9_A Bone marrow stromal ant 75.0 35 0.0012 28.3 12.9 28 112-139 441-468 (471)
22 3vkg_A Dynein heavy chain, cyt 74.9 74 0.0025 33.8 15.0 18 27-44 1937-1954(3245)
23 1x8y_A Lamin A/C; structural p 73.6 14 0.00048 24.3 6.6 35 117-151 38-72 (86)
24 3mov_A Lamin-B1; LMNB1, B-type 72.1 20 0.00067 24.1 7.3 64 3-69 26-89 (95)
25 3jsv_C NF-kappa-B essential mo 71.9 4 0.00014 27.8 3.5 39 2-40 46-84 (94)
26 3s4r_A Vimentin; alpha-helix, 71.9 19 0.00066 24.0 9.8 82 33-129 11-92 (93)
27 1gk4_A Vimentin; intermediate 70.3 19 0.00067 23.4 8.3 37 115-151 34-70 (84)
28 1x8y_A Lamin A/C; structural p 67.0 24 0.00081 23.1 8.1 65 3-70 17-81 (86)
29 2oqq_A Transcription factor HY 64.7 15 0.00052 21.2 4.5 29 123-151 5-33 (42)
30 3swk_A Vimentin; cytoskeleton, 64.4 27 0.00093 22.9 8.1 37 115-151 43-79 (86)
31 1gk4_A Vimentin; intermediate 61.7 30 0.001 22.4 7.6 19 51-69 60-78 (84)
32 3mov_A Lamin-B1; LMNB1, B-type 57.4 40 0.0014 22.5 6.5 41 111-151 41-81 (95)
33 3o0z_A RHO-associated protein 57.2 57 0.002 24.3 12.9 53 21-73 59-111 (168)
34 1gd2_E Transcription factor PA 56.2 28 0.00096 22.1 5.2 37 115-151 30-66 (70)
35 3bas_A Myosin heavy chain, str 52.9 45 0.0016 21.8 7.4 36 4-39 22-57 (89)
36 3oja_B Anopheles plasmodium-re 52.1 1.1E+02 0.0037 25.9 16.9 40 112-151 542-581 (597)
37 3i00_A HIP-I, huntingtin-inter 50.1 62 0.0021 22.6 7.0 21 111-131 96-116 (120)
38 3na7_A HP0958; flagellar bioge 47.9 92 0.0032 23.9 18.6 13 89-101 112-124 (256)
39 2v71_A Nuclear distribution pr 47.5 89 0.003 23.6 19.2 17 89-105 89-105 (189)
40 2v71_A Nuclear distribution pr 47.4 89 0.003 23.6 18.2 71 57-131 68-140 (189)
41 3ljm_A Coil Ser L9C; de novo d 46.4 31 0.0011 18.1 3.8 24 111-134 5-28 (31)
42 1x79_B RAB GTPase binding effe 44.6 76 0.0026 22.0 11.5 66 79-152 36-101 (112)
43 3s84_A Apolipoprotein A-IV; fo 42.2 1.2E+02 0.0042 23.8 18.9 10 31-40 44-53 (273)
44 3oja_B Anopheles plasmodium-re 41.5 1.6E+02 0.0054 24.8 13.2 26 121-146 544-569 (597)
45 1m1j_C Fibrinogen gamma chain; 41.2 1.6E+02 0.0054 24.7 9.2 37 111-147 95-131 (409)
46 3r2p_A Apolipoprotein A-I; amp 41.0 1E+02 0.0035 22.5 11.3 31 68-98 113-143 (185)
47 1x79_B RAB GTPase binding effe 40.0 91 0.0031 21.6 11.0 33 72-104 54-86 (112)
48 3i00_A HIP-I, huntingtin-inter 40.0 93 0.0032 21.7 8.3 44 54-101 10-53 (120)
49 3vem_A Helicase protein MOM1; 39.8 94 0.0032 21.7 9.9 26 58-83 38-63 (115)
50 2b9c_A Striated-muscle alpha t 38.4 1.1E+02 0.0037 22.0 9.5 23 55-77 30-52 (147)
51 3mq9_A Bone marrow stromal ant 38.1 1.7E+02 0.0057 24.0 12.3 23 128-150 443-465 (471)
52 3vkg_A Dynein heavy chain, cyt 36.9 4.2E+02 0.014 28.4 17.4 26 119-144 2061-2086(3245)
53 2p2u_A HOST-nuclease inhibitor 34.8 1.2E+02 0.004 22.2 6.4 43 60-102 24-66 (171)
54 3fx0_A NF-kappa-B essential mo 33.5 7.5 0.00026 26.5 -0.4 31 2-32 61-91 (96)
55 3swy_A Cyclic nucleotide-gated 32.5 75 0.0026 18.5 4.0 20 112-131 3-22 (46)
56 3u1c_A Tropomyosin alpha-1 cha 32.4 1.1E+02 0.0038 20.3 12.4 21 118-138 62-82 (101)
57 3lay_A Zinc resistance-associa 32.0 1.5E+02 0.0052 21.8 8.4 61 17-77 78-138 (175)
58 2xnx_M M protein, M1-BC1; cell 30.1 31 0.001 25.2 2.4 34 6-39 69-102 (146)
59 1deq_A Fibrinogen (alpha chain 29.6 2.5E+02 0.0085 23.5 12.4 58 29-86 72-129 (390)
60 3iv1_A Tumor susceptibility ge 29.6 1.2E+02 0.004 19.7 9.7 58 82-144 12-69 (78)
61 3cl3_D NF-kappa-B essential mo 27.2 1.7E+02 0.0058 20.8 6.2 34 68-101 35-68 (130)
62 2wt7_B Transcription factor MA 26.6 1.4E+02 0.0049 19.7 6.5 39 4-42 49-87 (90)
63 2ocy_A RAB guanine nucleotide 26.4 1.9E+02 0.0064 21.0 15.3 85 57-149 56-143 (154)
64 3u59_A Tropomyosin beta chain; 26.2 1.4E+02 0.0049 19.6 12.4 20 119-138 63-82 (101)
65 2v66_B Nuclear distribution pr 25.9 1.6E+02 0.0056 20.2 13.6 18 88-105 35-52 (111)
66 3ghg_A Fibrinogen alpha chain; 25.9 3.4E+02 0.012 23.8 11.3 105 3-121 64-187 (562)
67 4abm_A Charged multivesicular 24.9 1.4E+02 0.0048 19.1 8.1 30 111-140 49-78 (79)
68 1uix_A RHO-associated kinase; 24.7 1.4E+02 0.0048 19.0 8.5 32 25-62 5-36 (71)
69 1gd2_E Transcription factor PA 23.9 1.4E+02 0.0048 18.7 4.9 29 12-40 17-45 (70)
70 1m1j_B Fibrinogen beta chain; 23.2 3.5E+02 0.012 23.1 14.6 26 24-49 93-118 (464)
71 3hnw_A Uncharacterized protein 22.8 2E+02 0.007 20.2 9.0 32 121-152 103-134 (138)
72 3s84_A Apolipoprotein A-IV; fo 22.5 2.8E+02 0.0095 21.7 15.6 34 64-97 64-97 (273)
73 1gs9_A Apolipoprotein E, APOE4 22.2 2.3E+02 0.0078 20.5 7.8 36 63-98 103-138 (165)
74 2xv5_A Lamin-A/C; structural p 20.7 1.7E+02 0.0058 18.5 6.6 41 111-151 9-49 (74)
75 1gk6_A Vimentin; intermediate 20.0 1.5E+02 0.0052 17.7 6.3 39 113-151 6-44 (59)
No 1
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=96.91 E-value=0.018 Score=42.95 Aligned_cols=91 Identities=26% Similarity=0.366 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHhcCccHHHHHHhHhHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q psy6538 4 RIYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRRDLEEANIQHESTLANLR 83 (153)
Q Consensus 4 ~i~eLeeeLe~Er~~R~k~Ek~r~dl~~eLe~l~~~Lee~~~~t~aq~el~~krE~e~~~Lrr~Lee~~~~~e~~~~~lr 83 (153)
.+..|.+.|..|+..|..+|..+..+..||++|+..|++-.
T Consensus 59 e~~~L~~~l~~E~~~R~~aE~~~~~ie~ElEeLTasLFeEA--------------------------------------- 99 (154)
T 2ocy_A 59 EVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEA--------------------------------------- 99 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHH---------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------------------------
Confidence 34556666667777777777777777777777776664331
Q ss_pred hhhhhHHHHHHHHHHHHhhhhhhHHHhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q psy6538 84 KKHNDAVSEMGEQIDQLNKLKTNKEEATTEKVLKQLKHQLNEVQSRLDEANRTINDLDVARKKLI 148 (153)
Q Consensus 84 kkh~~~v~el~eqie~lqr~k~klEk~~~ek~~k~lE~ql~el~~k~ee~~r~~~el~~~~~rl~ 148 (153)
+.=+-.. +.+...++++...|+.++.+....++-++.++.+|..-...+.
T Consensus 100 ----------N~MVa~a-----r~~~~~~e~r~~~L~~ql~e~~~~l~~lq~ql~~LK~v~~~m~ 149 (154)
T 2ocy_A 100 ----------NNMVADA-----RKEKYAIEILNKRLTEQLREKDTLLDTLTLQLKNLKKVMHSLD 149 (154)
T ss_dssp ----------HHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCC
T ss_pred ----------HHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 1111111 1123366677777888888888888877777777765544443
No 2
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=96.01 E-value=0.2 Score=35.51 Aligned_cols=67 Identities=24% Similarity=0.441 Sum_probs=54.2
Q ss_pred hhHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHhcCccHHHHHHhHhHHHHHHHHHHHHHHHHhhh
Q psy6538 2 QARIYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRRDLEEANIQH 75 (153)
Q Consensus 2 q~~i~eLeeeLe~Er~~R~k~Ek~r~dl~~eLe~l~~~Lee~~~~t~aq~el~~krE~e~~~Lrr~Lee~~~~~ 75 (153)
++.|.+|...++.=-.-+++++-+..-+...+++++.++++.. ..+..-|.+|..||++++++++..
T Consensus 19 e~~I~~LR~qid~~~~e~a~l~leldn~~~~~edfk~KyE~E~-------~~r~~~E~di~~lrK~lD~~~l~r 85 (119)
T 3ol1_A 19 EEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEM-------LQREEAENTLQSFRQDVDNASLAR 85 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH-------HHHHHHHHHHHHhhhcccHHHHHH
Confidence 3568888888888777888888899999999999999998742 345557889999999999888543
No 3
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=95.92 E-value=0.21 Score=34.42 Aligned_cols=41 Identities=29% Similarity=0.470 Sum_probs=34.0
Q ss_pred hHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHh
Q psy6538 3 ARIYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEA 43 (153)
Q Consensus 3 ~~i~eLeeeLe~Er~~R~k~Ek~r~dl~~eLe~l~~~Lee~ 43 (153)
..+..|..+|..|+..|..+|..+..+..||++|+..|.+-
T Consensus 26 ~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTasLFeE 66 (97)
T 2eqb_B 26 DEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDE 66 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34667888888899999999999999999999998888654
No 4
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=95.58 E-value=0.0021 Score=61.06 Aligned_cols=61 Identities=38% Similarity=0.527 Sum_probs=0.0
Q ss_pred ChhHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHhcCccHHHHHHhHhHHHHH
Q psy6538 1 MQARIYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEM 61 (153)
Q Consensus 1 lq~~i~eLeeeLe~Er~~R~k~Ek~r~dl~~eLe~l~~~Lee~~~~t~aq~el~~krE~e~ 61 (153)
++.+|.+|.++|+.++..+.+.+.++.+|..+++.|..+|++.++.+.+|++++++|+++-
T Consensus 1121 Le~eie~L~eeLee~~~~~~~le~q~~~L~~ele~L~~~Ieel~~vn~aq~el~~~~e~~~ 1181 (1184)
T 1i84_S 1121 LESHISDLQEDLESEKAARNKAEKQKRDLSEELEALKTELEDTLDTTATQQELRGSDYKDD 1181 (1184)
T ss_dssp -------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhcccc
Confidence 3567888999999999999999999999999999999999999999999999999999863
No 5
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=95.38 E-value=0.04 Score=40.26 Aligned_cols=39 Identities=31% Similarity=0.497 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHH
Q psy6538 4 RIYELEEEVEVERQSRAKAEKQRADLARELEELGERLEE 42 (153)
Q Consensus 4 ~i~eLeeeLe~Er~~R~k~Ek~r~dl~~eLe~l~~~Lee 42 (153)
.+..|...|..|+..|..+|..+..+..||++|+..|++
T Consensus 47 e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElE~LTasLFe 85 (135)
T 2e7s_A 47 EVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFD 85 (135)
T ss_dssp HHHTHHHHHHHTTSHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566777777777777777777777777777777644
No 6
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=94.11 E-value=1.4 Score=33.18 Aligned_cols=72 Identities=13% Similarity=0.216 Sum_probs=61.0
Q ss_pred ChhHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHhcCccHHHHHHhHhHHHHHHHHHHHHHHHH
Q psy6538 1 MQARIYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRRDLEEAN 72 (153)
Q Consensus 1 lq~~i~eLeeeLe~Er~~R~k~Ek~r~dl~~eLe~l~~~Lee~~~~t~aq~el~~krE~e~~~Lrr~Lee~~ 72 (153)
|+-++.|+++-|-+|-.+-.|.-|+-.+++.-+..+-.-+-|..+....-..-+-..+.++..|+-.|+...
T Consensus 11 LekQL~E~n~kLk~EsE~~~rlkK~~tEl~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~qEr 82 (168)
T 3o0z_A 11 LQKQLEEANDLLRTESDTAVRLRKSHTEMSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQAILEAER 82 (168)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567899999999999999999999999999888877777777666666666667778899999999998877
No 7
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=93.01 E-value=3.9 Score=38.71 Aligned_cols=17 Identities=35% Similarity=0.464 Sum_probs=7.9
Q ss_pred hHHHHHHHHHHHHHHHH
Q psy6538 56 KREAEMSKLRRDLEEAN 72 (153)
Q Consensus 56 krE~e~~~Lrr~Lee~~ 72 (153)
+-+.++..|+.++++..
T Consensus 957 ~~~~e~~~L~~~l~~le 973 (1080)
T 2dfs_A 957 TYSTETEKLRSDVERLR 973 (1080)
T ss_dssp HHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34445555554444433
No 8
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=92.99 E-value=0.032 Score=53.03 Aligned_cols=14 Identities=21% Similarity=0.318 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHh
Q psy6538 4 RIYELEEEVEVERQ 17 (153)
Q Consensus 4 ~i~eLeeeLe~Er~ 17 (153)
++..+...+..++.
T Consensus 893 e~~~l~~~L~~e~~ 906 (1184)
T 1i84_S 893 EKNLLQEKLQAETE 906 (1184)
T ss_dssp HHHHHHHHHTTHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444444433
No 9
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=92.65 E-value=1.5 Score=29.23 Aligned_cols=83 Identities=27% Similarity=0.473 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHhcCccHHHHHHhHhHHHHHHHHHHHHHHHHhhhHHHHHHHHh
Q psy6538 5 IYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRRDLEEANIQHESTLANLRK 84 (153)
Q Consensus 5 i~eLeeeLe~Er~~R~k~Ek~r~dl~~eLe~l~~~Lee~~~~t~aq~el~~krE~e~~~Lrr~Lee~~~~~e~~~~~lrk 84 (153)
|.+|...++.=-.-+++++-++.-+...+++++..+++- +.++..-|++|..||++++++++.. ..|
T Consensus 2 i~eLr~qi~~l~~e~~~l~~e~dn~~~~~edfk~KyE~E-------~~~R~~~E~d~~~LrkdvD~a~l~r----~dL-- 68 (86)
T 3swk_A 2 MRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEE-------MLQREEAENTLQSFRQDVDNASLAR----LDL-- 68 (86)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHTTHHHHHHHH----HHH--
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHhhHHHHHHHH----HHH--
Confidence 677888888777777888888888888888888888764 4555667889999999999988543 122
Q ss_pred hhhhHHHHHHHHHHHHhh
Q psy6538 85 KHNDAVSEMGEQIDQLNK 102 (153)
Q Consensus 85 kh~~~v~el~eqie~lqr 102 (153)
...|..|.++|..|++
T Consensus 69 --E~kvesL~eEl~fLkk 84 (86)
T 3swk_A 69 --ERKVESLQEEIAFLKK 84 (86)
T ss_dssp --HHHHHHHHHHHHHHTT
T ss_pred --HHHHHHHHHHHHHHhh
Confidence 2346677777777665
No 10
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=92.22 E-value=2.2 Score=30.24 Aligned_cols=38 Identities=24% Similarity=0.349 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhc
Q psy6538 115 VLKQLKHQLNEVQSRLDEANRTINDLDVARKKLIIETT 152 (153)
Q Consensus 115 ~~k~lE~ql~el~~k~ee~~r~~~el~~~~~rl~~E~~ 152 (153)
..-.++..+.++..++++......++...+.++..+++
T Consensus 77 ~k~eLe~~l~el~~rleeeee~~~~L~~~kkkle~e~~ 114 (129)
T 2fxo_A 77 NKIQLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECS 114 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33457777888888888888888888888888776653
No 11
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=91.26 E-value=1.7 Score=30.55 Aligned_cols=36 Identities=19% Similarity=0.212 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhh
Q psy6538 116 LKQLKHQLNEVQSRLDEANRTINDLDVARKKLIIET 151 (153)
Q Consensus 116 ~k~lE~ql~el~~k~ee~~r~~~el~~~~~rl~~E~ 151 (153)
+..+|..+.-++.-+++..-...+|..+..-|..|+
T Consensus 64 r~~~E~di~~lrK~lD~~~l~r~dLE~~iesL~eEl 99 (119)
T 3ol1_A 64 REEAENTLQSFRQDVDNASLARLDLERKVESLQEEI 99 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHH
Confidence 444556666666666666666666666555555443
No 12
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=90.00 E-value=6.1 Score=37.36 Aligned_cols=13 Identities=15% Similarity=0.534 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHH
Q psy6538 2 QARIYELEEEVEV 14 (153)
Q Consensus 2 q~~i~eLeeeLe~ 14 (153)
+..|.+|+..|+.
T Consensus 927 E~kl~eLq~rL~~ 939 (1080)
T 2dfs_A 927 ENKIMQLQRKIDE 939 (1080)
T ss_dssp -------------
T ss_pred HHHHHHHHHHHHH
Confidence 3455556555544
No 13
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=89.65 E-value=6.1 Score=30.83 Aligned_cols=23 Identities=4% Similarity=0.073 Sum_probs=13.8
Q ss_pred hhhHHHHHHHHHHHHhhhhhhHH
Q psy6538 86 HNDAVSEMGEQIDQLNKLKTNKE 108 (153)
Q Consensus 86 h~~~v~el~eqie~lqr~k~klE 108 (153)
.+.....|+-+|+.+.+-...++
T Consensus 88 ~~kE~~aL~kEie~~~~~i~~lE 110 (256)
T 3na7_A 88 SERELRSLNIEEDIAKERSNQAN 110 (256)
T ss_dssp SSSHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666666555555
No 14
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=88.84 E-value=5.7 Score=29.34 Aligned_cols=33 Identities=15% Similarity=0.244 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHH
Q psy6538 6 YELEEEVEVERQSRAKAEKQRADLARELEELGE 38 (153)
Q Consensus 6 ~eLeeeLe~Er~~R~k~Ek~r~dl~~eLe~l~~ 38 (153)
.+|...+..-.......+.....+...+..+..
T Consensus 23 ~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ 55 (284)
T 1c1g_A 23 DEAEADKKAAEDRSKQLEDELVSLQKKLKATED 55 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333333
No 15
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=87.02 E-value=6.3 Score=27.81 Aligned_cols=38 Identities=21% Similarity=0.323 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHH
Q psy6538 4 RIYELEEEVEVERQSRAKAEKQRADLARELEELGERLE 41 (153)
Q Consensus 4 ~i~eLeeeLe~Er~~R~k~Ek~r~dl~~eLe~l~~~Le 41 (153)
.|..|.+.|..+-..|...+.....|..+..+|..+|.
T Consensus 21 el~~lke~l~k~e~~r~ele~~~~~l~~Ek~~L~~qL~ 58 (129)
T 2fxo_A 21 EFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQ 58 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666677776667777777777777777777666664
No 16
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=85.78 E-value=8.8 Score=28.30 Aligned_cols=42 Identities=26% Similarity=0.346 Sum_probs=30.4
Q ss_pred hhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhh
Q psy6538 110 ATTEKVLKQLKHQLNEVQSRLDEANRTINDLDVARKKLIIET 151 (153)
Q Consensus 110 ~~~ek~~k~lE~ql~el~~k~ee~~r~~~el~~~~~rl~~E~ 151 (153)
-.++...+.|...|.++..+++...|.+..|...+.+|..++
T Consensus 73 d~yEeqIk~L~~kLKEAE~RAE~AERsv~kLEk~id~lEd~L 114 (155)
T 2efr_A 73 DKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDEL 114 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356667777777777777777777777777777777766543
No 17
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=84.79 E-value=9.8 Score=27.98 Aligned_cols=28 Identities=7% Similarity=0.235 Sum_probs=10.4
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q psy6538 119 LKHQLNEVQSRLDEANRTINDLDVARKK 146 (153)
Q Consensus 119 lE~ql~el~~k~ee~~r~~~el~~~~~r 146 (153)
++..+..+...+......+..+.....+
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (284)
T 1c1g_A 242 AERSVTKLEKSIDDLEDELYAQKLKYKA 269 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333
No 18
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=81.11 E-value=12 Score=26.26 Aligned_cols=39 Identities=18% Similarity=0.254 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhh
Q psy6538 113 EKVLKQLKHQLNEVQSRLDEANRTINDLDVARKKLIIET 151 (153)
Q Consensus 113 ek~~k~lE~ql~el~~k~ee~~r~~~el~~~~~rl~~E~ 151 (153)
....-.+|.+|..++..+.-.-+...+|-..|..|..|+
T Consensus 81 q~~i~~lE~eL~~~r~e~~~ql~EYq~LlnvKl~Ld~EI 119 (129)
T 3tnu_B 81 RNKLAELEEALQKAKQDMARLLREYQELMNTKLALDVEI 119 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556777788887777777777788888888877765
No 19
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=80.90 E-value=12 Score=26.29 Aligned_cols=39 Identities=15% Similarity=0.303 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhh
Q psy6538 113 EKVLKQLKHQLNEVQSRLDEANRTINDLDVARKKLIIET 151 (153)
Q Consensus 113 ek~~k~lE~ql~el~~k~ee~~r~~~el~~~~~rl~~E~ 151 (153)
....-.+|.+|..++..+.-.-+...+|-..|..|..|+
T Consensus 83 q~~i~~lE~eL~~~r~em~~ql~EYq~Ll~vKl~Ld~EI 121 (131)
T 3tnu_A 83 QEMIGSVEEQLAQLRCEMEQQNQEYKILLDVKTRLEQEI 121 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455777777777777777777778888887777765
No 20
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=79.12 E-value=5.1 Score=28.02 Aligned_cols=39 Identities=23% Similarity=0.377 Sum_probs=31.5
Q ss_pred hhHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHH
Q psy6538 2 QARIYELEEEVEVERQSRAKAEKQRADLARELEELGERL 40 (153)
Q Consensus 2 q~~i~eLeeeLe~Er~~R~k~Ek~r~dl~~eLe~l~~~L 40 (153)
.+++.-...|..+||+.|-|+--.+-.|..+|..|.-++
T Consensus 68 kaQv~IY~~DF~aERadREkl~~eKe~L~~ql~~Lq~q~ 106 (110)
T 2v4h_A 68 KAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQREF 106 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccchhhHHHHHhHHHHHHHHHHHHHHHH
Confidence 467778888999999999988888888888887776654
No 21
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=75.00 E-value=35 Score=28.30 Aligned_cols=28 Identities=14% Similarity=0.411 Sum_probs=15.8
Q ss_pred hHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q psy6538 112 TEKVLKQLKHQLNEVQSRLDEANRTIND 139 (153)
Q Consensus 112 ~ek~~k~lE~ql~el~~k~ee~~r~~~e 139 (153)
.+++++-+|.++..++.++.+....+..
T Consensus 441 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (471)
T 3mq9_A 441 GQKKVEELEGEITTLNHKLQDASAEVER 468 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555666666666666655554443
No 22
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=74.94 E-value=74 Score=33.84 Aligned_cols=18 Identities=22% Similarity=0.296 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHhc
Q psy6538 27 ADLARELEELGERLEEAG 44 (153)
Q Consensus 27 ~dl~~eLe~l~~~Lee~~ 44 (153)
.+|+.+|..+.-.|+++.
T Consensus 1937 ~~l~~~L~~~~~~L~~k~ 1954 (3245)
T 3vkg_A 1937 KDLQVSLAQKNRELDVKN 1954 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 445555555555554443
No 23
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=73.64 E-value=14 Score=24.26 Aligned_cols=35 Identities=14% Similarity=0.234 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhh
Q psy6538 117 KQLKHQLNEVQSRLDEANRTINDLDVARKKLIIET 151 (153)
Q Consensus 117 k~lE~ql~el~~k~ee~~r~~~el~~~~~rl~~E~ 151 (153)
-.+|.++..++....-.-+...++-..|.+|..|+
T Consensus 38 ~~lE~el~~~r~e~~~ql~EYq~LlnvK~~Le~EI 72 (86)
T 1x8y_A 38 AEKEREMAEMRARMQQQLDEYQELLDIKLALDMEI 72 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 34567777777777777777777777777776664
No 24
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=72.06 E-value=20 Score=24.13 Aligned_cols=64 Identities=23% Similarity=0.385 Sum_probs=28.3
Q ss_pred hHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHhcCccHHHHHHhHhHHHHHHHHHHHHH
Q psy6538 3 ARIYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRRDLE 69 (153)
Q Consensus 3 ~~i~eLeeeLe~Er~~R~k~Ek~r~dl~~eLe~l~~~Lee~~~~t~aq~el~~krE~e~~~Lrr~Le 69 (153)
..|.+++..+..+.. .......+|..+|..++..+......-..-..++...+.|++.-|+-|+
T Consensus 26 ~~l~e~E~~~~~e~~---~~q~~i~~lE~eL~~~r~e~~~ql~EYq~LlnvKl~Le~EIatYrkLLE 89 (95)
T 3mov_A 26 ERIQELEDLLAKEKD---NSRRMLTDKEREMAEIRDQMQQQLNDYEQLLDVKLALDMEISAYRKLLE 89 (95)
T ss_dssp HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 445555555444322 1222233444444444444433322223333444556666666665553
No 25
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=71.87 E-value=4 Score=27.78 Aligned_cols=39 Identities=23% Similarity=0.377 Sum_probs=33.2
Q ss_pred hhHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHH
Q psy6538 2 QARIYELEEEVEVERQSRAKAEKQRADLARELEELGERL 40 (153)
Q Consensus 2 q~~i~eLeeeLe~Er~~R~k~Ek~r~dl~~eLe~l~~~L 40 (153)
.+++.-..+|..+||..|-|+--.+-.|..+|..|..++
T Consensus 46 k~Qv~IY~~DF~aERadREkl~~eKe~L~~ql~~lq~q~ 84 (94)
T 3jsv_C 46 KAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQREF 84 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 467888899999999999999888888888888887654
No 26
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=71.87 E-value=19 Score=23.99 Aligned_cols=82 Identities=22% Similarity=0.261 Sum_probs=44.9
Q ss_pred HHHHHHHHHHhcCccHHHHHHhHhHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhhHHHHHHHHHHHHhhhhhhHHHhhh
Q psy6538 33 LEELGERLEEAGGATSAQIELNKKREAEMSKLRRDLEEANIQHESTLANLRKKHNDAVSEMGEQIDQLNKLKTNKEEATT 112 (153)
Q Consensus 33 Le~l~~~Lee~~~~t~aq~el~~krE~e~~~Lrr~Lee~~~~~e~~~~~lrkkh~~~v~el~eqie~lqr~k~klEk~~~ 112 (153)
+-.|.++|-...+.+-.--.-|+..+.++..|+. ...+.+...+...+.+|..+|+.+..-+++++
T Consensus 11 mq~LNdRlAsyIdKVR~LEqqN~~Le~~i~~l~~----------~~~~~~~~~ye~~i~~Lr~~i~~~~~ek~~l~---- 76 (93)
T 3s4r_A 11 LQELNDRFANLIDKVRFLEQQNKILLAELEQLKG----------QGKSRLGDLYEEEMRELRRQVDQLTNDKARVE---- 76 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----------ccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence 3445555544444444444555555555544432 12345666677778888888887776666433
Q ss_pred HHHHHHHHHHHHHHHhH
Q psy6538 113 EKVLKQLKHQLNEVQSR 129 (153)
Q Consensus 113 ek~~k~lE~ql~el~~k 129 (153)
-.+..+...+.+++.|
T Consensus 77 -~e~dnl~~~~~~~k~K 92 (93)
T 3s4r_A 77 -VERDNLAEDIMRLREK 92 (93)
T ss_dssp -HHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHhh
Confidence 2333355555554443
No 27
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=70.26 E-value=19 Score=23.36 Aligned_cols=37 Identities=19% Similarity=0.302 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhh
Q psy6538 115 VLKQLKHQLNEVQSRLDEANRTINDLDVARKKLIIET 151 (153)
Q Consensus 115 ~~k~lE~ql~el~~k~ee~~r~~~el~~~~~rl~~E~ 151 (153)
..-.+|.++..++..+.-.-+...++-..|..|..|+
T Consensus 34 ~i~~lE~eL~~~r~e~~~q~~EYq~LlnvK~~Ld~EI 70 (84)
T 1gk4_A 34 TIGRLQDEIQNMKEEMARHLREYQDLLNVKMALDIEI 70 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 3444677777777777777777777777777777664
No 28
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=66.96 E-value=24 Score=23.10 Aligned_cols=65 Identities=22% Similarity=0.378 Sum_probs=32.9
Q ss_pred hHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHhcCccHHHHHHhHhHHHHHHHHHHHHHH
Q psy6538 3 ARIYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRRDLEE 70 (153)
Q Consensus 3 ~~i~eLeeeLe~Er~~R~k~Ek~r~dl~~eLe~l~~~Lee~~~~t~aq~el~~krE~e~~~Lrr~Lee 70 (153)
+.|.+++.-+..+.. ..-..-..+..+|..++..+......=..-..++-+-+.|++..|+-|+-
T Consensus 17 ~~l~e~E~~~~~~l~---~~q~~i~~lE~el~~~r~e~~~ql~EYq~LlnvK~~Le~EIatYRkLLEG 81 (86)
T 1x8y_A 17 AKLRDLEDSLARERD---TSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIHAYRKLLEG 81 (86)
T ss_dssp HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHcC
Confidence 445555554433221 22223334444454554444433333344456666678888888887763
No 29
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=64.75 E-value=15 Score=21.18 Aligned_cols=29 Identities=21% Similarity=0.336 Sum_probs=18.4
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHhhh
Q psy6538 123 LNEVQSRLDEANRTINDLDVARKKLIIET 151 (153)
Q Consensus 123 l~el~~k~ee~~r~~~el~~~~~rl~~E~ 151 (153)
+.++..++.+++...++|....+-|++||
T Consensus 5 l~eLE~r~k~le~~naeLEervstLq~EN 33 (42)
T 2oqq_A 5 LSELENRVKDLENKNSELEERLSTLQNEN 33 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 45566666666666666666666666665
No 30
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=64.41 E-value=27 Score=22.88 Aligned_cols=37 Identities=19% Similarity=0.193 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhh
Q psy6538 115 VLKQLKHQLNEVQSRLDEANRTINDLDVARKKLIIET 151 (153)
Q Consensus 115 ~~k~lE~ql~el~~k~ee~~r~~~el~~~~~rl~~E~ 151 (153)
.+..+|..+.-++.-+++..-...+|..+..-|..|+
T Consensus 43 ~R~~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~eEl 79 (86)
T 3swk_A 43 QREEAENTLQSFRQDVDNASLARLDLERKVESLQEEI 79 (86)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666888899999999999999999999988888775
No 31
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=61.73 E-value=30 Score=22.43 Aligned_cols=19 Identities=21% Similarity=0.396 Sum_probs=10.0
Q ss_pred HHHhHhHHHHHHHHHHHHH
Q psy6538 51 IELNKKREAEMSKLRRDLE 69 (153)
Q Consensus 51 ~el~~krE~e~~~Lrr~Le 69 (153)
..++-.-+.|++.-|+-|+
T Consensus 60 lnvK~~Ld~EIatYRkLLE 78 (84)
T 1gk4_A 60 LNVKMALDIEIATYRKLLE 78 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhhHHHHHHHHHHHc
Confidence 3444445555555555554
No 32
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=57.40 E-value=40 Score=22.54 Aligned_cols=41 Identities=12% Similarity=0.266 Sum_probs=28.8
Q ss_pred hhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhh
Q psy6538 111 TTEKVLKQLKHQLNEVQSRLDEANRTINDLDVARKKLIIET 151 (153)
Q Consensus 111 ~~ek~~k~lE~ql~el~~k~ee~~r~~~el~~~~~rl~~E~ 151 (153)
.+....-.+|.++..++......-+...++-..|..|..|+
T Consensus 41 ~~q~~i~~lE~eL~~~r~e~~~ql~EYq~LlnvKl~Le~EI 81 (95)
T 3mov_A 41 NSRRMLTDKEREMAEIRDQMQQQLNDYEQLLDVKLALDMEI 81 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555777777777777777777777777777777664
No 33
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=57.23 E-value=57 Score=24.25 Aligned_cols=53 Identities=13% Similarity=0.203 Sum_probs=26.7
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHhcCccHHHHHHhHhHHHHHHHHHHHHHHHHh
Q psy6538 21 KAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRRDLEEANI 73 (153)
Q Consensus 21 k~Ek~r~dl~~eLe~l~~~Lee~~~~t~aq~el~~krE~e~~~Lrr~Lee~~~ 73 (153)
..+..+..|..++..|...|+.-...-..-.++.+--+.-+..|.-+++....
T Consensus 59 ~L~~~k~~Leke~~~LQa~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~ 111 (168)
T 3o0z_A 59 ILENSKSQTDKDYYQLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKH 111 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555666666666666666544433333333333344444445555554443
No 34
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=56.21 E-value=28 Score=22.12 Aligned_cols=37 Identities=19% Similarity=0.148 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhh
Q psy6538 115 VLKQLKHQLNEVQSRLDEANRTINDLDVARKKLIIET 151 (153)
Q Consensus 115 ~~k~lE~ql~el~~k~ee~~r~~~el~~~~~rl~~E~ 151 (153)
.++.||.++.++......+......|-.....|.+|+
T Consensus 30 ~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El 66 (70)
T 1gd2_E 30 HLKALETQVVTLKELHSSTTLENDQLRQKVRQLEEEL 66 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555444444444445555555555554
No 35
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=52.87 E-value=45 Score=21.80 Aligned_cols=36 Identities=14% Similarity=0.254 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHH
Q psy6538 4 RIYELEEEVEVERQSRAKAEKQRADLARELEELGER 39 (153)
Q Consensus 4 ~i~eLeeeLe~Er~~R~k~Ek~r~dl~~eLe~l~~~ 39 (153)
.+..|.+.++.+-..|...+.....|..+..+|..+
T Consensus 22 el~~lke~l~k~e~~rkele~~~~~l~~ek~~L~~q 57 (89)
T 3bas_A 22 QMDKMKEDLAKTERIKKELEEQNVTLLEQKNDLFGS 57 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555566555555555555555555555555555
No 36
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=52.10 E-value=1.1e+02 Score=25.89 Aligned_cols=40 Identities=18% Similarity=0.123 Sum_probs=25.3
Q ss_pred hHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhh
Q psy6538 112 TEKVLKQLKHQLNEVQSRLDEANRTINDLDVARKKLIIET 151 (153)
Q Consensus 112 ~ek~~k~lE~ql~el~~k~ee~~r~~~el~~~~~rl~~E~ 151 (153)
.++.+..++..+.+.+.++.++.+..+.+...+..+....
T Consensus 542 ~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~~ 581 (597)
T 3oja_B 542 LEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKK 581 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3345555666666666677777777666666666665543
No 37
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=50.10 E-value=62 Score=22.58 Aligned_cols=21 Identities=5% Similarity=0.219 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHhHHH
Q psy6538 111 TTEKVLKQLKHQLNEVQSRLD 131 (153)
Q Consensus 111 ~~ek~~k~lE~ql~el~~k~e 131 (153)
..|++....|..++.++.+|.
T Consensus 96 e~E~kAqa~Eerf~KLKe~yt 116 (120)
T 3i00_A 96 EIERKAQANEQRYSKLKEKYS 116 (120)
T ss_dssp ---------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444444445555555555444
No 38
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=47.92 E-value=92 Score=23.92 Aligned_cols=13 Identities=8% Similarity=0.345 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHh
Q psy6538 89 AVSEMGEQIDQLN 101 (153)
Q Consensus 89 ~v~el~eqie~lq 101 (153)
.+.++.+.++.++
T Consensus 112 eile~~e~ie~~~ 124 (256)
T 3na7_A 112 EIENLQNEIKRKS 124 (256)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444433
No 39
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=47.49 E-value=89 Score=23.59 Aligned_cols=17 Identities=24% Similarity=0.386 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHhhhhh
Q psy6538 89 AVSEMGEQIDQLNKLKT 105 (153)
Q Consensus 89 ~v~el~eqie~lqr~k~ 105 (153)
.++.|..+|..+...+.
T Consensus 89 ~~~~Lq~el~~l~~~~~ 105 (189)
T 2v71_A 89 QVSVLEDDLSQTRAIKE 105 (189)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444443333
No 40
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=47.44 E-value=89 Score=23.58 Aligned_cols=71 Identities=21% Similarity=0.268 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhhHHHHHHHHHHHHhhhhhhHH--HhhhHHHHHHHHHHHHHHHhHHH
Q psy6538 57 REAEMSKLRRDLEEANIQHESTLANLRKKHNDAVSEMGEQIDQLNKLKTNKE--EATTEKVLKQLKHQLNEVQSRLD 131 (153)
Q Consensus 57 rE~e~~~Lrr~Lee~~~~~e~~~~~lrkkh~~~v~el~eqie~lqr~k~klE--k~~~ek~~k~lE~ql~el~~k~e 131 (153)
...++..||.-+......+-.+++.|.+ .+..+....+.++.---.|| -=.+++..+...+.+.++..+++
T Consensus 68 L~~E~e~~k~K~~~~~~e~~~~~~~Lq~----el~~l~~~~~~l~~~ireLEq~NDdlEr~~R~~~~SleD~e~kln 140 (189)
T 2v71_A 68 LKYEVEALKEKLEHQYAQSYKQVSVLED----DLSQTRAIKEQLHKYVRELEQANDDLERAKRATIMSLEDFEQRLN 140 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHH
Confidence 3444444554444444444444444442 34445555555555444444 22344444444444444444443
No 41
>3ljm_A Coil Ser L9C; de novo design, three stranded coiled coil, APO, de novo Pro; 1.36A {Synthetic} PDB: 2jgo_A 1cos_A 3h5g_A 3h5f_A 3pbj_A 2x6p_C 1coi_A
Probab=46.38 E-value=31 Score=18.06 Aligned_cols=24 Identities=21% Similarity=0.365 Sum_probs=19.3
Q ss_pred hhHHHHHHHHHHHHHHHhHHHHHH
Q psy6538 111 TTEKVLKQLKHQLNEVQSRLDEAN 134 (153)
Q Consensus 111 ~~ek~~k~lE~ql~el~~k~ee~~ 134 (153)
..+++|-.+|+.|+-+..+++-++
T Consensus 5 alekkcaalesklqalekkleale 28 (31)
T 3ljm_A 5 ALEKKCAALESKLQALEKKLEALE 28 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367899999999998888887653
No 42
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=44.62 E-value=76 Score=22.00 Aligned_cols=66 Identities=9% Similarity=0.114 Sum_probs=28.8
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHhhhhhhHHHhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhc
Q psy6538 79 LANLRKKHNDAVSEMGEQIDQLNKLKTNKEEATTEKVLKQLKHQLNEVQSRLDEANRTINDLDVARKKLIIETT 152 (153)
Q Consensus 79 ~~~lrkkh~~~v~el~eqie~lqr~k~klEk~~~ek~~k~lE~ql~el~~k~ee~~r~~~el~~~~~rl~~E~~ 152 (153)
...-+..|...|..|.+++.+... .+....+.+-.--..++..+..+...+..+...+.+|+.+|+
T Consensus 36 w~~k~E~~k~qV~~L~~~~q~sE~--------~L~~Lqq~fsq~q~~vq~qL~~Lt~~Re~V~~eL~rLQ~eNd 101 (112)
T 1x79_B 36 IKQSSEDSSHQISALVLRAQASEI--------LLEELQQGLSQAKRDVQEQMAVLMQSREQVSEELVRLQKDND 101 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 334444555666677766664333 122223333333344455555555666666666677777764
No 43
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}
Probab=42.15 E-value=1.2e+02 Score=23.75 Aligned_cols=10 Identities=50% Similarity=0.733 Sum_probs=4.3
Q ss_pred HHHHHHHHHH
Q psy6538 31 RELEELGERL 40 (153)
Q Consensus 31 ~eLe~l~~~L 40 (153)
.++++++.+|
T Consensus 44 ~~le~lr~~L 53 (273)
T 3s84_A 44 DNLRELQQRL 53 (273)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4444444443
No 44
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=41.54 E-value=1.6e+02 Score=24.81 Aligned_cols=26 Identities=12% Similarity=0.152 Sum_probs=10.4
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHH
Q psy6538 121 HQLNEVQSRLDEANRTINDLDVARKK 146 (153)
Q Consensus 121 ~ql~el~~k~ee~~r~~~el~~~~~r 146 (153)
.+..++..++++....+.++....+.
T Consensus 544 ~~~~~le~~~~~~~~~~~~l~~e~~~ 569 (597)
T 3oja_B 544 QENIALEKQLDNKRAKQAELRQETSL 569 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHhhhhhHHHHHHHHHHH
Confidence 33334444444444444444333333
No 45
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=41.24 E-value=1.6e+02 Score=24.73 Aligned_cols=37 Identities=11% Similarity=0.120 Sum_probs=18.7
Q ss_pred hhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q psy6538 111 TTEKVLKQLKHQLNEVQSRLDEANRTINDLDVARKKL 147 (153)
Q Consensus 111 ~~ek~~k~lE~ql~el~~k~ee~~r~~~el~~~~~rl 147 (153)
.++......+.++..++..+...+..+..+..+...|
T Consensus 95 ~~e~~~~~~~~~i~~l~~~~~~~~~~i~~l~~~i~~l 131 (409)
T 1m1j_C 95 RYENTILAHENTIQQLTDMHIMNSNKITQLKQKIAQL 131 (409)
T ss_dssp HTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcchHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 3344444555555555555555555555554444444
No 46
>3r2p_A Apolipoprotein A-I; amphipathic alpha-helix, major protein of high density lipop (HDL), lipid binding, plasma, lipid transport; 2.20A {Homo sapiens} PDB: 1gw3_A 1gw4_A
Probab=41.01 E-value=1e+02 Score=22.47 Aligned_cols=31 Identities=19% Similarity=0.261 Sum_probs=14.6
Q ss_pred HHHHHhhhHHHHHHHHhhhhhHHHHHHHHHH
Q psy6538 68 LEEANIQHESTLANLRKKHNDAVSEMGEQID 98 (153)
Q Consensus 68 Lee~~~~~e~~~~~lrkkh~~~v~el~eqie 98 (153)
+++....-.+....|+.+....+.+|..++.
T Consensus 113 ~e~lr~~l~Py~~el~~~~~~~~e~Lr~~L~ 143 (185)
T 3r2p_A 113 MELYRQKVEPLRAELQEGARQKLHELQEKLS 143 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTTTTTSH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 3333333345555555555555544444433
No 47
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=40.04 E-value=91 Score=21.59 Aligned_cols=33 Identities=21% Similarity=0.237 Sum_probs=23.7
Q ss_pred HhhhHHHHHHHHhhhhhHHHHHHHHHHHHhhhh
Q psy6538 72 NIQHESTLANLRKKHNDAVSEMGEQIDQLNKLK 104 (153)
Q Consensus 72 ~~~~e~~~~~lrkkh~~~v~el~eqie~lqr~k 104 (153)
.-.+|..+..|++.+..+.....+++-.|..-+
T Consensus 54 ~q~sE~~L~~Lqq~fsq~q~~vq~qL~~Lt~~R 86 (112)
T 1x79_B 54 AQASEILLEELQQGLSQAKRDVQEQMAVLMQSR 86 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 335568888888888888888888777665433
No 48
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=40.02 E-value=93 Score=21.67 Aligned_cols=44 Identities=14% Similarity=0.398 Sum_probs=29.7
Q ss_pred hHhHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhhHHHHHHHHHHHHh
Q psy6538 54 NKKREAEMSKLRRDLEEANIQHESTLANLRKKHNDAVSEMGEQIDQLN 101 (153)
Q Consensus 54 ~~krE~e~~~Lrr~Lee~~~~~e~~~~~lrkkh~~~v~el~eqie~lq 101 (153)
...|+..+..|+++++... ..+..++.-+...|..|..+|-.|.
T Consensus 10 ~d~rD~~Ie~Lkreie~lk----~ele~l~~E~q~~v~ql~~~i~~Le 53 (120)
T 3i00_A 10 KDEKDHLIERLYREISGLK----AQLENMKTESQRVVLQLKGHVSELE 53 (120)
T ss_dssp CCTHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3568888888999888888 5555566666666666666555443
No 49
>3vem_A Helicase protein MOM1; coiled-coil, hendecad, transcriptional gene silencing, siRNA nucleus, chromatin, transcription; 3.20A {Arabidopsis thaliana}
Probab=39.83 E-value=94 Score=21.67 Aligned_cols=26 Identities=31% Similarity=0.401 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHH
Q psy6538 58 EAEMSKLRRDLEEANIQHESTLANLR 83 (153)
Q Consensus 58 E~e~~~Lrr~Lee~~~~~e~~~~~lr 83 (153)
--|+.+||+.-+..+-.||.....|+
T Consensus 38 ~~ELeRLr~~~d~~~K~HE~kklqLk 63 (115)
T 3vem_A 38 LHELEKLRRESENSKKTFEEKKSILK 63 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45788999999999988888876666
No 50
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=38.43 E-value=1.1e+02 Score=21.98 Aligned_cols=23 Identities=17% Similarity=0.173 Sum_probs=11.8
Q ss_pred HhHHHHHHHHHHHHHHHHhhhHH
Q psy6538 55 KKREAEMSKLRRDLEEANIQHES 77 (153)
Q Consensus 55 ~krE~e~~~Lrr~Lee~~~~~e~ 77 (153)
.+.-.+....++.|+......+.
T Consensus 30 ek~adE~eR~~k~lE~r~~~deE 52 (147)
T 2b9c_A 30 EKAADESERGMKVIESRAQKDEE 52 (147)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhcccHH
Confidence 44444555555666655544443
No 51
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=38.05 E-value=1.7e+02 Score=24.04 Aligned_cols=23 Identities=17% Similarity=0.254 Sum_probs=12.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhh
Q psy6538 128 SRLDEANRTINDLDVARKKLIIE 150 (153)
Q Consensus 128 ~k~ee~~r~~~el~~~~~rl~~E 150 (153)
.++.+++..+..++.++..+.++
T Consensus 443 ~~~~~~~~~~~~~~~~~~~~~~~ 465 (471)
T 3mq9_A 443 KKVEELEGEITTLNHKLQDASAE 465 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555544444
No 52
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=36.88 E-value=4.2e+02 Score=28.39 Aligned_cols=26 Identities=19% Similarity=0.466 Sum_probs=10.7
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy6538 119 LKHQLNEVQSRLDEANRTINDLDVAR 144 (153)
Q Consensus 119 lE~ql~el~~k~ee~~r~~~el~~~~ 144 (153)
++.++...+.|++-..+.+.-|..-+
T Consensus 2061 L~~e~~~~~~kl~rA~~Li~gL~~Ek 2086 (3245)
T 3vkg_A 2061 IKTESSKVKNKVDRSIALLDNLNSER 2086 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcc
Confidence 33334444444444444444444333
No 53
>2p2u_A HOST-nuclease inhibitor protein GAM, putative; structural genomics, unknown function, PSI-2, protein structure initiative; 2.75A {Desulfovibrio vulgaris} SCOP: h.4.18.1
Probab=34.77 E-value=1.2e+02 Score=22.21 Aligned_cols=43 Identities=12% Similarity=0.260 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHhhhhhHHHHHHHHHHHHhh
Q psy6538 60 EMSKLRRDLEEANIQHESTLANLRKKHNDAVSEMGEQIDQLNK 102 (153)
Q Consensus 60 e~~~Lrr~Lee~~~~~e~~~~~lrkkh~~~v~el~eqie~lqr 102 (153)
++..+++.+.+........|..++.++...+..|...+..++.
T Consensus 24 ~ia~l~r~~~~i~~~~n~eI~~ik~~~~~~~~~l~~~i~~l~~ 66 (171)
T 2p2u_A 24 EIATIDRKVGEIEAQMNEAIDAAKARASQKSAPLLARRKELED 66 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556677777777777777777777777777776666665543
No 54
>3fx0_A NF-kappa-B essential modulator; coiled-coil, coiled coil, cytoplasm, disease mutation, ectodermal dysplasia, HOST-virus interaction; 3.20A {Homo sapiens}
Probab=33.48 E-value=7.5 Score=26.47 Aligned_cols=31 Identities=23% Similarity=0.335 Sum_probs=17.8
Q ss_pred hhHHHHHHHHHHHHHhHHHHHHHhHHHHHHH
Q psy6538 2 QARIYELEEEVEVERQSRAKAEKQRADLARE 32 (153)
Q Consensus 2 q~~i~eLeeeLe~Er~~R~k~Ek~r~dl~~e 32 (153)
.+++.-...|..+||..|-|.--.+-+|..+
T Consensus 61 ~aQ~~iY~~DF~aERaaREk~~~EKe~L~~q 91 (96)
T 3fx0_A 61 KAQADIYKADFQAERQAREKLAEKKELLQEQ 91 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSSTTSCC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 4566667777778887777654444444333
No 55
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=32.53 E-value=75 Score=18.52 Aligned_cols=20 Identities=30% Similarity=0.483 Sum_probs=11.9
Q ss_pred hHHHHHHHHHHHHHHHhHHH
Q psy6538 112 TEKVLKQLKHQLNEVQSRLD 131 (153)
Q Consensus 112 ~ek~~k~lE~ql~el~~k~e 131 (153)
+|-++.++|..+.-++.++.
T Consensus 3 lEekv~~Le~~ld~LqTr~A 22 (46)
T 3swy_A 3 LEEKVEQLGSSLDTLQTRFA 22 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44555566666666666654
No 56
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=32.38 E-value=1.1e+02 Score=20.33 Aligned_cols=21 Identities=19% Similarity=0.178 Sum_probs=10.9
Q ss_pred HHHHHHHHHHhHHHHHHHHHH
Q psy6538 118 QLKHQLNEVQSRLDEANRTIN 138 (153)
Q Consensus 118 ~lE~ql~el~~k~ee~~r~~~ 138 (153)
.++.+|.+++.++++......
T Consensus 62 ~~ee~L~ea~~kLee~ek~~~ 82 (101)
T 3u1c_A 62 QVLEELHKSEDSLLFAEENAA 82 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555444
No 57
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=31.98 E-value=1.5e+02 Score=21.82 Aligned_cols=61 Identities=16% Similarity=0.132 Sum_probs=31.9
Q ss_pred hHHHHHHHhHHHHHHHHHHHHHHHHHhcCccHHHHHHhHhHHHHHHHHHHHHHHHHhhhHH
Q psy6538 17 QSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRRDLEEANIQHES 77 (153)
Q Consensus 17 ~~R~k~Ek~r~dl~~eLe~l~~~Lee~~~~t~aq~el~~krE~e~~~Lrr~Lee~~~~~e~ 77 (153)
..+.+.-.+..+|..++-+...+|.....+...=..--...-.++..|+.++......+..
T Consensus 78 ~I~~e~r~~~~~Lr~ql~akr~EL~aL~~a~~~DeakI~aL~~Ei~~Lr~qL~~~R~k~~~ 138 (175)
T 3lay_A 78 KIYDDYYTQTSALRQQLISKRYEYNALLTASSPDTAKINAVAKEMESLGQKLDEQRVKRDV 138 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444445556666666666666554433332223334455566666666665544443
No 58
>2xnx_M M protein, M1-BC1; cell adhesion, virulence factor, streptococcal toxic shock S; 3.30A {Streptococcus pyogenes}
Probab=30.08 E-value=31 Score=25.17 Aligned_cols=34 Identities=24% Similarity=0.261 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHH
Q psy6538 6 YELEEEVEVERQSRAKAEKQRADLARELEELGER 39 (153)
Q Consensus 6 ~eLeeeLe~Er~~R~k~Ek~r~dl~~eLe~l~~~ 39 (153)
..|..+|++.|.+...++.....+..++..|...
T Consensus 69 ~~l~rdleasr~akk~~ea~la~l~~~~~~LeAE 102 (146)
T 2xnx_M 69 EAITREQEINRNLLGNAKLELDQLSSEKEQLTIE 102 (146)
T ss_dssp TTHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHH
Confidence 4555666666666666666666655555555544
No 59
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=29.65 E-value=2.5e+02 Score=23.53 Aligned_cols=58 Identities=19% Similarity=0.191 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHhcCccHHHHHHhHhHHHHHHHHHHHHHHHHhhhHHHHHHHHhhh
Q psy6538 29 LARELEELGERLEEAGGATSAQIELNKKREAEMSKLRRDLEEANIQHESTLANLRKKH 86 (153)
Q Consensus 29 l~~eLe~l~~~Lee~~~~t~aq~el~~krE~e~~~Lrr~Lee~~~~~e~~~~~lrkkh 86 (153)
|...|+.++.--.++...+..-.++-+++.......-.-+-+....-|..|..|+.+-
T Consensus 72 L~~~L~~~s~s~~~~~~y~~~~~~~lk~~~~q~~dndn~~~e~s~eLe~~i~~lk~~V 129 (390)
T 1deq_A 72 LRDSLFNYQKNSKDSNTLTKNIVELMRGDFAKANNNDNTFKQINEDLRSRIEILRRKV 129 (390)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444334444444555555555555444333333333333333444444333
No 60
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=29.58 E-value=1.2e+02 Score=19.70 Aligned_cols=58 Identities=14% Similarity=0.296 Sum_probs=27.0
Q ss_pred HHhhhhhHHHHHHHHHHHHhhhhhhHHHhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy6538 82 LRKKHNDAVSEMGEQIDQLNKLKTNKEEATTEKVLKQLKHQLNEVQSRLDEANRTINDLDVAR 144 (153)
Q Consensus 82 lrkkh~~~v~el~eqie~lqr~k~klEk~~~ek~~k~lE~ql~el~~k~ee~~r~~~el~~~~ 144 (153)
||.+....+...+..|+.+.+...-|. ....+++.-+..+...-.+++.++..+....
T Consensus 12 LRrrl~E~~~q~qaEl~sLrrT~~EL~-----~G~~KL~~mi~~l~~E~~~l~~ni~~lk~K~ 69 (78)
T 3iv1_A 12 LRWRMKEEMDRAQAELNALKRTEEDLK-----KGHQKLEEMVTRLDQEVAEVDKNIELLKKKD 69 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHH-----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555566666666666555333 2223333334444444444444444443333
No 61
>3cl3_D NF-kappa-B essential modulator; death effector domain, coiled-coil, coiled coil, cytoplasm, disease mutation, ectodermal dysplasia; 3.20A {Homo sapiens}
Probab=27.20 E-value=1.7e+02 Score=20.77 Aligned_cols=34 Identities=24% Similarity=0.231 Sum_probs=13.3
Q ss_pred HHHHHhhhHHHHHHHHhhhhhHHHHHHHHHHHHh
Q psy6538 68 LEEANIQHESTLANLRKKHNDAVSEMGEQIDQLN 101 (153)
Q Consensus 68 Lee~~~~~e~~~~~lrkkh~~~v~el~eqie~lq 101 (153)
+++.....+.-...+++.|...+.-|.-|++++.
T Consensus 35 ~e~~~~~~~~Elee~kqq~~~~~d~L~lQ~esme 68 (130)
T 3cl3_D 35 ASEQARQLESEREALQQQHSVQVDQLRMQGQSVE 68 (130)
T ss_dssp ----------------CTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444445555667778888877777777543
No 62
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=26.64 E-value=1.4e+02 Score=19.75 Aligned_cols=39 Identities=23% Similarity=0.200 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHH
Q psy6538 4 RIYELEEEVEVERQSRAKAEKQRADLARELEELGERLEE 42 (153)
Q Consensus 4 ~i~eLeeeLe~Er~~R~k~Ek~r~dl~~eLe~l~~~Lee 42 (153)
++.+|+.+......-....-.....+..|++.++..++.
T Consensus 49 q~~~LE~e~~~L~~e~~~L~~e~~~~~~e~d~~k~k~~~ 87 (90)
T 2wt7_B 49 QKHHLENEKTQLIQQVEQLKQEVSRLARERDAYKVKSEK 87 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555454555555555555555555555543
No 63
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=26.36 E-value=1.9e+02 Score=21.05 Aligned_cols=85 Identities=15% Similarity=0.257 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhhHHHHHHHHHHHHhhhhhh-HHHhh--hHHHHHHHHHHHHHHHhHHHHH
Q psy6538 57 REAEMSKLRRDLEEANIQHESTLANLRKKHNDAVSEMGEQIDQLNKLKTN-KEEAT--TEKVLKQLKHQLNEVQSRLDEA 133 (153)
Q Consensus 57 rE~e~~~Lrr~Lee~~~~~e~~~~~lrkkh~~~v~el~eqie~lqr~k~k-lEk~~--~ek~~k~lE~ql~el~~k~ee~ 133 (153)
.+.++.+|...|.+.......+-... ..+...++.|.-.-+. +-++. ..+.+-.++-....+...+.|.
T Consensus 56 ~~~e~~~L~~~l~~E~~~R~~aE~~~--------~~ie~ElEeLTasLFeEAN~MVa~ar~~~~~~e~r~~~L~~ql~e~ 127 (154)
T 2ocy_A 56 RDDEVKRLREDIAKENELRTKAEEEA--------DKLNKEVEDLTASLFDEANNMVADARKEKYAIEILNKRLTEQLREK 127 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56667777666666654443332222 2233333333222110 11333 3344556677778888888888
Q ss_pred HHHHHHHHHHHHHHHh
Q psy6538 134 NRTINDLDVARKKLII 149 (153)
Q Consensus 134 ~r~~~el~~~~~rl~~ 149 (153)
...+..+..++..|..
T Consensus 128 ~~~l~~lq~ql~~LK~ 143 (154)
T 2ocy_A 128 DTLLDTLTLQLKNLKK 143 (154)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8888888888877653
No 64
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=26.24 E-value=1.4e+02 Score=19.63 Aligned_cols=20 Identities=20% Similarity=0.448 Sum_probs=8.0
Q ss_pred HHHHHHHHHhHHHHHHHHHH
Q psy6538 119 LKHQLNEVQSRLDEANRTIN 138 (153)
Q Consensus 119 lE~ql~el~~k~ee~~r~~~ 138 (153)
++.++.+++.++++......
T Consensus 63 ~~e~l~~a~~kLe~~ek~~~ 82 (101)
T 3u59_A 63 YSESVKEAQEKLEQAEKKAT 82 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444433333
No 65
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=25.90 E-value=1.6e+02 Score=20.20 Aligned_cols=18 Identities=22% Similarity=0.374 Sum_probs=8.0
Q ss_pred hHHHHHHHHHHHHhhhhh
Q psy6538 88 DAVSEMGEQIDQLNKLKT 105 (153)
Q Consensus 88 ~~v~el~eqie~lqr~k~ 105 (153)
..+..|...|..+...+.
T Consensus 35 ~~~~~Lq~El~~lr~~~~ 52 (111)
T 2v66_B 35 KQVSVLEDDLSQTRAIKE 52 (111)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444444333
No 66
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=25.88 E-value=3.4e+02 Score=23.82 Aligned_cols=105 Identities=15% Similarity=0.214 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHhcCccHHHHHHhHhHHHHHHHHHHHHHHHHhhhHHHHHHH
Q psy6538 3 ARIYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRRDLEEANIQHESTLANL 82 (153)
Q Consensus 3 ~~i~eLeeeLe~Er~~R~k~Ek~r~dl~~eLe~l~~~Lee~~~~t~aq~el~~krE~e~~~Lrr~Lee~~~~~e~~~~~l 82 (153)
.+|.+|...|+.=...+..++.. +..-.+.|+.++....+....-.++..-.+.-+.-|++.+.... ..|..|
T Consensus 64 krINELKnqLEdlsKnsKdseqy---~k~~~E~Lr~rq~q~~dNdNtynE~S~ELRRrIqyLKekVdnQl----snIrvL 136 (562)
T 3ghg_A 64 NRINKLKNSLFEYQKNNKDSHSL---TTNIMEILRGDFSSANNRDNTYNRVSEDLRSRIEVLKRKVIEKV----QHIQLL 136 (562)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHH---HHHHHHTTSSHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH----HHHHHH
T ss_pred HHHHHHHHHHHHHHhhchhHHHH---HHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHH----HHHHHH
Q ss_pred HhhhhhHHHHHHHHHHHHhhhhhhHH-------------------HhhhHHHHHHHHH
Q psy6538 83 RKKHNDAVSEMGEQIDQLNKLKTNKE-------------------EATTEKVLKQLKH 121 (153)
Q Consensus 83 rkkh~~~v~el~eqie~lqr~k~klE-------------------k~~~ek~~k~lE~ 121 (153)
+ ..|.+|+-.+||...-+. .-.++-..|+|+.
T Consensus 137 Q-------snLedq~~kIQRLEvDIdiqirsCKgsCsr~~~~~vd~~sY~~~QKQLeQ 187 (562)
T 3ghg_A 137 Q-------KNVRAQLVDMKRLEVDIDIKIRSCRGSCSRALAREVDLKDYEDQQKQLEQ 187 (562)
T ss_dssp H-------HHHHHHHHHHHHHHHHHHHHHHHGGGTBSCCCCCCCCHHHHHHHHHHHHH
T ss_pred H-------HHHHHHHHHHHHHHHHHHHHHHhccccccchheeecchHHHHHHHHHHHH
No 67
>4abm_A Charged multivesicular BODY protein 4B; cell cycle, protein transport, HIV-1; 1.80A {Homo sapiens}
Probab=24.91 E-value=1.4e+02 Score=19.08 Aligned_cols=30 Identities=20% Similarity=0.215 Sum_probs=21.5
Q ss_pred hhHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q psy6538 111 TTEKVLKQLKHQLNEVQSRLDEANRTINDL 140 (153)
Q Consensus 111 ~~ek~~k~lE~ql~el~~k~ee~~r~~~el 140 (153)
.+=++.|.+|.+|.-+...+..++..+..+
T Consensus 49 ~aLkrKK~~E~qL~q~~~ql~~LE~q~~~i 78 (79)
T 4abm_A 49 QALKRKKRYEKQLAQIDGTLSTIEFQREAL 78 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344566778888888888887777776654
No 68
>1uix_A RHO-associated kinase; coiled-coil, transferase; HET: MSE; 1.80A {Bos taurus} SCOP: h.1.27.1
Probab=24.66 E-value=1.4e+02 Score=18.98 Aligned_cols=32 Identities=41% Similarity=0.580 Sum_probs=20.4
Q ss_pred hHHHHHHHHHHHHHHHHHhcCccHHHHHHhHhHHHHHH
Q psy6538 25 QRADLARELEELGERLEEAGGATSAQIELNKKREAEMS 62 (153)
Q Consensus 25 ~r~dl~~eLe~l~~~Lee~~~~t~aq~el~~krE~e~~ 62 (153)
.-..+..|+++|..+|. .++.++.+.++.++.
T Consensus 5 ~v~~l~~E~eel~~klk------~~~ee~~~~~eee~~ 36 (71)
T 1uix_A 5 DVANLANEKEELNNKLK------EAQEQLSRLKDEEIS 36 (71)
T ss_dssp HHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHH
Confidence 34567777888888873 445555555566655
No 69
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=23.92 E-value=1.4e+02 Score=18.74 Aligned_cols=29 Identities=21% Similarity=0.211 Sum_probs=22.5
Q ss_pred HHHHHhHHHHHHHhHHHHHHHHHHHHHHH
Q psy6538 12 VEVERQSRAKAEKQRADLARELEELGERL 40 (153)
Q Consensus 12 Le~Er~~R~k~Ek~r~dl~~eLe~l~~~L 40 (153)
-.+=|++|.+-+....+|...+..|....
T Consensus 17 R~AQRafReRK~~~i~~LE~~v~~le~~~ 45 (70)
T 1gd2_E 17 RAAQRAFRKRKEDHLKALETQVVTLKELH 45 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678888888888888888888777544
No 70
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=23.23 E-value=3.5e+02 Score=23.08 Aligned_cols=26 Identities=19% Similarity=0.351 Sum_probs=16.0
Q ss_pred HhHHHHHHHHHHHHHHHHHhcCccHH
Q psy6538 24 KQRADLARELEELGERLEEAGGATSA 49 (153)
Q Consensus 24 k~r~dl~~eLe~l~~~Lee~~~~t~a 49 (153)
++...+...|.+|...|+.....|..
T Consensus 93 k~q~~V~~~LqeLe~~l~~lsn~Ts~ 118 (464)
T 1m1j_B 93 KQEKTVKPVLRDLKDRVAKFSDTSTT 118 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhhHhHHHHHHHHHHHHhhhhhH
Confidence 45555666777777777666444443
No 71
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=22.79 E-value=2e+02 Score=20.21 Aligned_cols=32 Identities=19% Similarity=0.153 Sum_probs=18.3
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhc
Q psy6538 121 HQLNEVQSRLDEANRTINDLDVARKKLIIETT 152 (153)
Q Consensus 121 ~ql~el~~k~ee~~r~~~el~~~~~rl~~E~~ 152 (153)
-.+..+...+++..+.++++..++.+|++++.
T Consensus 103 ~k~e~~~~e~~~l~~~~~~l~~~~~~le~~~~ 134 (138)
T 3hnw_A 103 IKAESSAKEIKELKSEINKYQKNIVKLETELN 134 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555556666666666666666543
No 72
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}
Probab=22.55 E-value=2.8e+02 Score=21.67 Aligned_cols=34 Identities=6% Similarity=0.123 Sum_probs=17.5
Q ss_pred HHHHHHHHHhhhHHHHHHHHhhhhhHHHHHHHHH
Q psy6538 64 LRRDLEEANIQHESTLANLRKKHNDAVSEMGEQI 97 (153)
Q Consensus 64 Lrr~Lee~~~~~e~~~~~lrkkh~~~v~el~eqi 97 (153)
+...+++....-.+....|+.+....+.+|...+
T Consensus 64 ~~~~~eelr~kL~p~~~el~~~l~~~~eeLr~~L 97 (273)
T 3s84_A 64 VNTQAEQLRRQLTPYAQRMERVLRENADSLQASL 97 (273)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 3344444444445555555555555555555555
No 73
>1gs9_A Apolipoprotein E, APOE4; lipid transport, heparin-binding, plasma, lipid binding protein; 1.7A {Homo sapiens} SCOP: a.24.1.1 PDB: 1or3_A 1or2_A 1le4_A 1bz4_A 1lpe_A 1le2_A
Probab=22.19 E-value=2.3e+02 Score=20.50 Aligned_cols=36 Identities=11% Similarity=0.184 Sum_probs=23.2
Q ss_pred HHHHHHHHHHhhhHHHHHHHHhhhhhHHHHHHHHHH
Q psy6538 63 KLRRDLEEANIQHESTLANLRKKHNDAVSEMGEQID 98 (153)
Q Consensus 63 ~Lrr~Lee~~~~~e~~~~~lrkkh~~~v~el~eqie 98 (153)
+|..++++....-+..+..|+.+-...+.++...+.
T Consensus 103 ~L~~d~EelR~~l~p~~~el~~~l~~~~EelR~kl~ 138 (165)
T 1gs9_A 103 RLGADMEDVRGRLVQYRGEVQAMLGQSTEELRVRLA 138 (165)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667777766667777777666666655555554
No 74
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=20.72 E-value=1.7e+02 Score=18.50 Aligned_cols=41 Identities=17% Similarity=0.305 Sum_probs=28.1
Q ss_pred hhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhh
Q psy6538 111 TTEKVLKQLKHQLNEVQSRLDEANRTINDLDVARKKLIIET 151 (153)
Q Consensus 111 ~~ek~~k~lE~ql~el~~k~ee~~r~~~el~~~~~rl~~E~ 151 (153)
.+....-.+|.++..++..+.-.-+...+|-..|.+|..|+
T Consensus 9 ~~~~~i~~lE~eL~~~r~e~~~ql~EYq~LlniKl~Le~EI 49 (74)
T 2xv5_A 9 TSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEI 49 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445556777777777777777777777777777776664
No 75
>1gk6_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, leucine zipper, fusion protein; 1.9A {Saccharomyces cerevisiae} SCOP: h.1.20.1
Probab=20.03 E-value=1.5e+02 Score=17.68 Aligned_cols=39 Identities=18% Similarity=0.243 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhh
Q psy6538 113 EKVLKQLKHQLNEVQSRLDEANRTINDLDVARKKLIIET 151 (153)
Q Consensus 113 ek~~k~lE~ql~el~~k~ee~~r~~~el~~~~~rl~~E~ 151 (153)
...+-.+|+++..++....-.-+...++-..|..|..|+
T Consensus 6 q~~i~~le~el~~~r~e~~~q~~eYq~LlniK~~Le~EI 44 (59)
T 1gk6_A 6 EDKVEELLSKNYHLENEVARLKKLVGDLLNVKMALDIEI 44 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 344556788888888888888888888888888887765
Done!