Query psy6538
Match_columns 153
No_of_seqs 105 out of 295
Neff 6.6
Searched_HMMs 13730
Date Fri Aug 16 20:35:31 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6538.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/6538hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1lrza1 a.2.7.4 (A:245-309) Me 52.9 11 0.00077 22.3 4.2 40 3-43 17-56 (65)
2 d1cxzb_ a.2.6.1 (B:) Protein k 26.7 66 0.0048 19.7 6.2 27 117-143 59-85 (86)
3 d1gs9a_ a.24.1.1 (A:) Apolipop 12.0 1.8E+02 0.013 18.4 12.6 21 67-87 86-106 (144)
4 d1fxka_ a.2.5.1 (A:) Prefoldin 9.4 2E+02 0.014 17.3 10.9 24 114-137 79-102 (107)
5 d1xb2b1 a.5.2.2 (B:56-111) Elo 7.9 1.1E+02 0.0079 17.1 2.0 36 52-87 10-45 (56)
6 d1lrza1 a.2.7.4 (A:245-309) Me 7.8 2E+02 0.015 16.2 7.2 25 114-138 37-61 (65)
7 d1efub3 a.5.2.2 (B:1-54) Elong 7.7 1.9E+02 0.014 15.8 3.2 39 51-89 9-47 (54)
8 d1r6fa_ e.46.1.1 (A:) Low calc 6.8 2.6E+02 0.019 20.4 4.3 35 22-59 119-153 (295)
9 d1aipc1 a.5.2.2 (C:2-53) Elong 6.4 1.3E+02 0.0092 16.5 1.8 35 53-87 9-43 (52)
10 d2d8da1 a.130.1.1 (A:3-82) Cho 6.2 2.5E+02 0.018 15.7 3.9 29 122-150 2-30 (80)
No 1
>d1lrza1 a.2.7.4 (A:245-309) Methicillin resistance protein FemA probable tRNA-binding arm {Staphylococcus aureus [TaxId: 1280]}
Probab=52.89 E-value=11 Score=22.29 Aligned_cols=40 Identities=20% Similarity=0.405 Sum_probs=23.7
Q ss_pred hHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHh
Q psy6538 3 ARIYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEA 43 (153)
Q Consensus 3 ~~i~eLeeeLe~Er~~R~k~Ek~r~dl~~eLe~l~~~Lee~ 43 (153)
..|..+..+| .+++-=.|.-.+++.|+..++.+..++.++
T Consensus 17 ~~i~k~~~~l-eknP~skK~~nk~~el~~Q~~s~~~ki~Ea 56 (65)
T d1lrza1 17 KDLNKALKDI-EKRPENKKAHNKRDNLQQQLDANEQKIEEG 56 (65)
T ss_dssp HHHHHHHHHH-HHCTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-HHCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555 234444556666777777777777666655
No 2
>d1cxzb_ a.2.6.1 (B:) Protein kinase c-like 1, pkn/prk1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=26.73 E-value=66 Score=19.70 Aligned_cols=27 Identities=19% Similarity=0.282 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHH
Q psy6538 117 KQLKHQLNEVQSRLDEANRTINDLDVA 143 (153)
Q Consensus 117 k~lE~ql~el~~k~ee~~r~~~el~~~ 143 (153)
-.++..|+..+.++.++...+.++++.
T Consensus 59 ~~V~~eL~~sN~kL~~L~~eL~eLna~ 85 (86)
T d1cxzb_ 59 GPVELLLRGSSRRLDLLHQQLQELHAH 85 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 447778888888888888888887753
No 3
>d1gs9a_ a.24.1.1 (A:) Apolipoprotein E {Human (Homo sapiens), E4 [TaxId: 9606]}
Probab=11.98 E-value=1.8e+02 Score=18.36 Aligned_cols=21 Identities=10% Similarity=0.080 Sum_probs=8.0
Q ss_pred HHHHHHhhhHHHHHHHHhhhh
Q psy6538 67 DLEEANIQHESTLANLRKKHN 87 (153)
Q Consensus 67 ~Lee~~~~~e~~~~~lrkkh~ 87 (153)
.+++....-.+.+..++.+-.
T Consensus 86 ~lee~r~kl~~~~eel~~~~~ 106 (144)
T d1gs9a_ 86 DMEDVRGRLVQYRGEVQAMLG 106 (144)
T ss_dssp HHHHHHHHHHHHHHHHHTSTT
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333334443333
No 4
>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=9.42 E-value=2e+02 Score=17.25 Aligned_cols=24 Identities=25% Similarity=0.256 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHH
Q psy6538 114 KVLKQLKHQLNEVQSRLDEANRTI 137 (153)
Q Consensus 114 k~~k~lE~ql~el~~k~ee~~r~~ 137 (153)
..++.++.++..+..++++....+
T Consensus 79 ~~i~~l~~q~~~l~~~l~~~~~~l 102 (107)
T d1fxka_ 79 LREKTIERQEERVMKKLQEMQVNI 102 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555544444444433
No 5
>d1xb2b1 a.5.2.2 (B:56-111) Elongation factor Ts (EF-Ts), N-terminal domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}
Probab=7.90 E-value=1.1e+02 Score=17.06 Aligned_cols=36 Identities=17% Similarity=0.200 Sum_probs=27.6
Q ss_pred HHhHhHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhh
Q psy6538 52 ELNKKREAEMSKLRRDLEEANIQHESTLANLRKKHN 87 (153)
Q Consensus 52 el~~krE~e~~~Lrr~Lee~~~~~e~~~~~lrkkh~ 87 (153)
+|+.+=-+.|..-++-|++.+-..+.++.-||++-.
T Consensus 10 ~LRe~Tga~~~dcKkAL~e~~gD~ekA~e~LrkkG~ 45 (56)
T d1xb2b1 10 KLRRKTGYSFINCKKALETCGGDLKQAESWLHKQAQ 45 (56)
T ss_dssp HHHHHHCCCHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 444444456778889999999999999999997653
No 6
>d1lrza1 a.2.7.4 (A:245-309) Methicillin resistance protein FemA probable tRNA-binding arm {Staphylococcus aureus [TaxId: 1280]}
Probab=7.85 E-value=2e+02 Score=16.18 Aligned_cols=25 Identities=20% Similarity=0.387 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHH
Q psy6538 114 KVLKQLKHQLNEVQSRLDEANRTIN 138 (153)
Q Consensus 114 k~~k~lE~ql~el~~k~ee~~r~~~ 138 (153)
.+.+.|+.|+.-...++++....+.
T Consensus 37 nk~~el~~Q~~s~~~ki~Ea~~li~ 61 (65)
T d1lrza1 37 NKRDNLQQQLDANEQKIEEGKRLQE 61 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667788888888888888776554
No 7
>d1efub3 a.5.2.2 (B:1-54) Elongation factor Ts (EF-Ts), N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=7.69 E-value=1.9e+02 Score=15.77 Aligned_cols=39 Identities=31% Similarity=0.333 Sum_probs=30.4
Q ss_pred HHHhHhHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhhH
Q psy6538 51 IELNKKREAEMSKLRRDLEEANIQHESTLANLRKKHNDA 89 (153)
Q Consensus 51 ~el~~krE~e~~~Lrr~Lee~~~~~e~~~~~lrkkh~~~ 89 (153)
.+|+.+=-+.|..-++-|++..-..+.++.-||++....
T Consensus 9 K~LR~~Tgag~~dCKkAL~e~~gD~ekA~e~Lr~kG~~~ 47 (54)
T d1efub3 9 KELRERTGAGMMDCKKALTEANGDIELAIENMRKSGAIK 47 (54)
T ss_dssp HHHHHHHCCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHHHHhHHH
Confidence 345555556778889999999999999999999886543
No 8
>d1r6fa_ e.46.1.1 (A:) Low calcium response locus protein V, LcrV {Yersinia pestis [TaxId: 632]}
Probab=6.83 E-value=2.6e+02 Score=20.42 Aligned_cols=35 Identities=31% Similarity=0.366 Sum_probs=27.4
Q ss_pred HHHhHHHHHHHHHHHHHHHHHhcCccHHHHHHhHhHHH
Q psy6538 22 AEKQRADLARELEELGERLEEAGGATSAQIELNKKREA 59 (153)
Q Consensus 22 ~Ek~r~dl~~eLe~l~~~Lee~~~~t~aq~el~~krE~ 59 (153)
-..+|..|..||.+|..+|.-- ...|.+|+++.-+
T Consensus 119 ~d~kR~~lrdeL~~lTaeLKIy---sVIQSeIn~~lS~ 153 (295)
T d1r6fa_ 119 HGDARSKLREELAELTAELKIY---SVIQAEINKHLSS 153 (295)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHhhh---hhHHHHHHHHHhc
Confidence 3457899999999999998654 5778888877554
No 9
>d1aipc1 a.5.2.2 (C:2-53) Elongation factor Ts (EF-Ts), N-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=6.37 E-value=1.3e+02 Score=16.46 Aligned_cols=35 Identities=29% Similarity=0.424 Sum_probs=26.4
Q ss_pred HhHhHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhh
Q psy6538 53 LNKKREAEMSKLRRDLEEANIQHESTLANLRKKHN 87 (153)
Q Consensus 53 l~~krE~e~~~Lrr~Lee~~~~~e~~~~~lrkkh~ 87 (153)
|+.+=-+.|..-++-|++++-..+.++.-||++-.
T Consensus 9 LR~~Tga~~~dcKkAL~e~~gD~ekA~e~Lr~~G~ 43 (52)
T d1aipc1 9 LREATGAGMMDVKRALEDAGWDEEKAVQLLRERGA 43 (52)
T ss_dssp HHHHHCCCHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHcCCCHHHHHHHHHHHhH
Confidence 33334456777888999999999999999987654
No 10
>d2d8da1 a.130.1.1 (A:3-82) Chorismate mutase domain of P-protein {Thermus thermophilus [TaxId: 274]}
Probab=6.23 E-value=2.5e+02 Score=15.70 Aligned_cols=29 Identities=28% Similarity=0.449 Sum_probs=16.9
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHhh
Q psy6538 122 QLNEVQSRLDEANRTINDLDVARKKLIIE 150 (153)
Q Consensus 122 ql~el~~k~ee~~r~~~el~~~~~rl~~E 150 (153)
.|.+++.+++...+.+..+-.+...+..+
T Consensus 2 ~L~~lR~~ID~iD~~i~~Ll~~R~~~~~~ 30 (80)
T d2d8da1 2 RIQALRKEVDRVNREILRLLSERGRLVQE 30 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566666666666666665555554443
Done!