RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy6538
(153 letters)
>gnl|CDD|144972 pfam01576, Myosin_tail_1, Myosin tail. The myosin molecule is a
multi-subunit complex made up of two heavy chains and
four light chains it is a fundamental contractile
protein found in all eukaryote cell types. This family
consists of the coiled-coil myosin heavy chain tail
region. The coiled-coil is composed of the tail from two
molecules of myosin. These can then assemble into the
macromolecular thick filament. The coiled-coil region
provides the structural backbone the thick filament.
Length = 859
Score = 122 bits (307), Expect = 6e-33
Identities = 97/175 (55%), Positives = 120/175 (68%), Gaps = 23/175 (13%)
Query: 2 QARIYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEM 61
+ARI ELEEE+E ER +RAKAEK RADL+RELEEL ERLEEAGGAT+AQIELNKKREAE+
Sbjct: 45 EARIRELEEELEAERAARAKAEKARADLSRELEELSERLEEAGGATAAQIELNKKREAEL 104
Query: 62 SKLRRDLEEANIQHESTLANLRKKHNDAVSEMGEQIDQLNKLKT---------------- 105
+KLR+DLEEAN+QHE LA LRKKH DA++E+ EQI+QL K K
Sbjct: 105 AKLRKDLEEANLQHEEALATLRKKHQDAINELSEQIEQLQKQKAKAEKEKSQLQAEVDDL 164
Query: 106 -------NKEEATTEKVLKQLKHQLNEVQSRLDEANRTINDLDVARKKLIIETTE 153
K + EK KQL+ QL+E+Q +LDE R +NDL + +L E ++
Sbjct: 165 LAQLDQIAKAKLNAEKKAKQLESQLSELQVKLDELQRQLNDLTSQKSRLQSENSD 219
Score = 37.3 bits (87), Expect = 0.002
Identities = 35/153 (22%), Positives = 71/153 (46%), Gaps = 6/153 (3%)
Query: 1 MQARIYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAE 60
+ +I ELEE E EK ++ L ELE+L LE A A S + K +
Sbjct: 326 LNQKISELEEAAEAANAKCDSLEKTKSRLQSELEDLQIELERANAAASELEKKQKNFDKI 385
Query: 61 MSKLRRDLEEANIQHESTLANLRKKHNDAVSEMGEQIDQLNKLKTNKEEATTEKVLKQLK 120
+++ +R ++E + ++ R + E + ++++ + E K L+
Sbjct: 386 LAEWKRKVDELQAELDTAQREARNLSTELFRLKNELEELKDQVEALRREN------KNLQ 439
Query: 121 HQLNEVQSRLDEANRTINDLDVARKKLIIETTE 153
+++++ +L E R +++L+ AR++L E E
Sbjct: 440 DEIHDLTDQLGEGGRNVHELEKARRRLEAEKDE 472
Score = 28.9 bits (65), Expect = 1.3
Identities = 35/125 (28%), Positives = 58/125 (46%), Gaps = 5/125 (4%)
Query: 23 EKQRADLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRRDLEEANIQHESTLANL 82
EK R L E +EL LEEA A + + + E+S++R ++E + E N
Sbjct: 460 EKARRRLEAEKDELQAALEEAEAALELEESKVLRAQVELSQIRSEIERRLAEKEEEFENT 519
Query: 83 RKKHNDAVSEMGEQIDQLNKLKTNKEEATTEKVLKQLKHQLNEVQSRLDEANRTINDLDV 142
RK H A+ + ++ K K A ++ K+L+ +NE++ LD AN+ +
Sbjct: 520 RKNHQRAIESLQATLEAEAKGK-----AEASRLKKKLEGDINELEIALDHANKANAEAQK 574
Query: 143 ARKKL 147
KK
Sbjct: 575 NVKKY 579
Score = 27.3 bits (61), Expect = 3.5
Identities = 38/141 (26%), Positives = 64/141 (45%), Gaps = 5/141 (3%)
Query: 7 ELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRR 66
E + +E E + RA + Q L +L+ L E+LEE A + K AE+ + R
Sbjct: 247 EAKRSLEEESRERANLQAQLRQLEHDLDSLREQLEEESEAKAELERQLSKANAEIQQWRS 306
Query: 67 DLEEANIQHESTLANLRKKHNDAVSEMGEQIDQLNKLKTNKEEATTEKVLKQLKHQLNEV 126
E L L+KK N +SE+ E + N + + EK +L+ +L ++
Sbjct: 307 KFESEGALRAEELEELKKKLNQKISELEEAAEAA-----NAKCDSLEKTKSRLQSELEDL 361
Query: 127 QSRLDEANRTINDLDVARKKL 147
Q L+ AN ++L+ +K
Sbjct: 362 QIELERANAAASELEKKQKNF 382
Score = 27.3 bits (61), Expect = 4.4
Identities = 40/136 (29%), Positives = 68/136 (50%), Gaps = 6/136 (4%)
Query: 1 MQARIYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAE 60
+ R LE E+E R + +AE+ R EL E ER+ E S+ I +K E E
Sbjct: 607 AERRATALEAELEELRSALEQAERARKQAETELAEASERVNELTAQNSSLIAQKRKLEGE 666
Query: 61 MSKLRRDLEEANIQHESTLANLRKKHNDAVSEMGEQIDQLNKLKTNKEEATTEKVLKQLK 120
++ L+ DL+EA + L ++ A ++ ++L + + + + E++ KQL+
Sbjct: 667 LAALQSDLDEAV----NELKAAEERAKKAQADAARLAEELRQEQEHSQ--HLERLRKQLE 720
Query: 121 HQLNEVQSRLDEANRT 136
Q+ E+Q RLDEA
Sbjct: 721 SQVKELQVRLDEAEAA 736
>gnl|CDD|236892 PRK11281, PRK11281, hypothetical protein; Provisional.
Length = 1113
Score = 39.1 bits (92), Expect = 5e-04
Identities = 24/106 (22%), Positives = 51/106 (48%), Gaps = 13/106 (12%)
Query: 49 AQIELNKKR---EAEMSKLRRDLEEA-----NIQ-HESTLANLRKKHNDAVSEMGEQIDQ 99
AQ++ K+ EAE +++DLE+ I + L+++ A +++ + +
Sbjct: 43 AQLDALNKQKLLEAEDKLVQQDLEQTLALLDKIDRQKEETEQLKQQLAQAPAKLRQAQAE 102
Query: 100 LNKLKTNKEEATTEKV----LKQLKHQLNEVQSRLDEANRTINDLD 141
L LK + +E T E + L+QL+ +L + +L A + + +
Sbjct: 103 LEALKDDNDEETRETLSTLSLRQLESRLAQTLDQLQNAQNDLAEYN 148
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common
bacterial type. SMC (structural maintenance of
chromosomes) proteins bind DNA and act in organizing and
segregating chromosomes for partition. SMC proteins are
found in bacteria, archaea, and eukaryotes. This family
represents the SMC protein of most bacteria. The smc
gene is often associated with scpB (TIGR00281) and scpA
genes, where scp stands for segregation and condensation
protein. SMC was shown (in Caulobacter crescentus) to be
induced early in S phase but present and bound to DNA
throughout the cell cycle [Cellular processes, Cell
division, DNA metabolism, Chromosome-associated
proteins].
Length = 1179
Score = 38.1 bits (89), Expect = 0.001
Identities = 31/154 (20%), Positives = 68/154 (44%), Gaps = 1/154 (0%)
Query: 1 MQARIYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAE 60
+ +I L +++ + E++ A L++EL EL +EE E + EAE
Sbjct: 724 LSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAE 783
Query: 61 MSKLRRDLEEANIQHESTLANLRKKHNDAVSEMGEQIDQLNKLKTNKEE-ATTEKVLKQL 119
+ +L +E+ + ++ L + + E + +L++ + A TE+ L+ L
Sbjct: 784 IEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDL 843
Query: 120 KHQLNEVQSRLDEANRTINDLDVARKKLIIETTE 153
+ Q+ E+ ++ I +L+ ++L E
Sbjct: 844 EEQIEELSEDIESLAAEIEELEELIEELESELEA 877
Score = 35.0 bits (81), Expect = 0.009
Identities = 29/133 (21%), Positives = 54/133 (40%), Gaps = 6/133 (4%)
Query: 1 MQARIYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAE 60
++ RI E +E + + + LA E+EEL E +EE +++E A
Sbjct: 829 LERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEEL----ESELEALLNERAS 884
Query: 61 MSKLRRDLEEANIQHESTLANLRKKHNDAVSEMGEQIDQLNKLKTNKEEATTEKVLKQLK 120
+ + L + L L K ++ E+ E ++L +L+ E + L+
Sbjct: 885 LEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVR--IDNLQ 942
Query: 121 HQLNEVQSRLDEA 133
+L+E S E
Sbjct: 943 ERLSEEYSLTLEE 955
Score = 34.6 bits (80), Expect = 0.016
Identities = 37/161 (22%), Positives = 68/161 (42%), Gaps = 19/161 (11%)
Query: 1 MQARIYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAE 60
++ I ELE E+E RA E+ A L ELEEL E L E S ++ +
Sbjct: 864 LEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREK 923
Query: 61 MSKLRRDLEEANIQHESTLANLRKKHNDAVSEMGEQIDQLNKLKTNKEEATTEKVLKQLK 120
+++L LE ++ ++ L ++++ + E + K +E + LK+L+
Sbjct: 924 LAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEA-----LENKIEDDEEEARRRLKRLE 978
Query: 121 HQLN--------------EVQSRLDEANRTINDLDVARKKL 147
+++ E++ R D DL A++ L
Sbjct: 979 NKIKELGPVNLAAIEEYEELKERYDFLTAQKEDLTEAKETL 1019
Score = 33.1 bits (76), Expect = 0.050
Identities = 33/146 (22%), Positives = 63/146 (43%), Gaps = 6/146 (4%)
Query: 1 MQARIYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGGA---TSAQIELNKKR 57
++ ++ EL+EE+E + E + +L LEEL E+LE QI
Sbjct: 342 LEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNE 401
Query: 58 EAEMSKLRRDLEEA-NIQHESTLANLRKKHNDAVSEMGEQIDQLNKL--KTNKEEATTEK 114
+ LE+ + L+K + E+ ++++L + + +E E+
Sbjct: 402 IERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEE 461
Query: 115 VLKQLKHQLNEVQSRLDEANRTINDL 140
L++L+ +L E + LD A R + L
Sbjct: 462 ALEELREELEEAEQALDAAERELAQL 487
Score = 32.7 bits (75), Expect = 0.056
Identities = 38/139 (27%), Positives = 72/139 (51%), Gaps = 6/139 (4%)
Query: 2 QARIYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEM 61
+ I ELEE++E + A+ EK A+L +ELEEL E LE+ ++E ++ + +
Sbjct: 676 RREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQL----RKELEELSRQISAL 731
Query: 62 SKLRRDLEEANIQHESTLANLRKKHNDAVSEMGEQIDQLNKLKTNKEEATTEKVLKQLKH 121
K LE Q E +A L K+ + +E+ E ++L + + EA E +++L+
Sbjct: 732 RKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEA--EAEIEELEA 789
Query: 122 QLNEVQSRLDEANRTINDL 140
Q+ +++ L +++L
Sbjct: 790 QIEQLKEELKALREALDEL 808
Score = 32.3 bits (74), Expect = 0.088
Identities = 32/160 (20%), Positives = 65/160 (40%), Gaps = 20/160 (12%)
Query: 2 QARIYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAG----------GATSAQI 51
I LE++ ++ R+ A E+Q +L +LEEL +L+E ++
Sbjct: 294 ANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEEL 353
Query: 52 ELNKKREAEMSKLRRDLEEANIQHESTLANLRKKHNDA----------VSEMGEQIDQLN 101
E + E+ +LE + E L LR K + + ++++L
Sbjct: 354 ESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLE 413
Query: 102 KLKTNKEEATTEKVLKQLKHQLNEVQSRLDEANRTINDLD 141
+ ++ E + K + +L E+Q+ L+E + +L
Sbjct: 414 DRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQ 453
Score = 32.3 bits (74), Expect = 0.094
Identities = 38/132 (28%), Positives = 68/132 (51%), Gaps = 10/132 (7%)
Query: 1 MQARIYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAE 60
+++R+ ELEE++E R A+ E Q A L E+E L RLE ++ + E
Sbjct: 370 LESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDR-------RERLQQE 422
Query: 61 MSKLRRDLEEANIQ-HESTLANLRKKHNDAVSEMGEQIDQLNKLKTNKEEATTEKVLKQL 119
+ +L + LEEA ++ ++ L L ++ + E+ + L +L+ EEA L
Sbjct: 423 IEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQA--LDAA 480
Query: 120 KHQLNEVQSRLD 131
+ +L ++Q+RLD
Sbjct: 481 ERELAQLQARLD 492
Score = 30.0 bits (68), Expect = 0.46
Identities = 39/142 (27%), Positives = 66/142 (46%), Gaps = 6/142 (4%)
Query: 2 QARIYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEM 61
+ +I ELEE++ ++ A+ K+ +L ELE+L + LEE S QI +K A +
Sbjct: 683 EEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEEL----SRQISALRKDLARL 738
Query: 62 SKLRRDLEEANIQHESTLANLRKKHNDAVSEMGEQIDQLNKLKTNKEEATTEKVLKQLKH 121
LEE Q L L + + + E ++L + + EE E ++QLK
Sbjct: 739 EAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEEL--EAQIEQLKE 796
Query: 122 QLNEVQSRLDEANRTINDLDVA 143
+L ++ LDE + L+
Sbjct: 797 ELKALREALDELRAELTLLNEE 818
Score = 28.1 bits (63), Expect = 1.9
Identities = 38/141 (26%), Positives = 72/141 (51%), Gaps = 5/141 (3%)
Query: 3 ARIYELEEEVEVERQSRAKAEKQRADLARELEELGERLEE---AGGATSAQIELNKKREA 59
R+ EL EE+E ++ +AE++ +L EL+EL E+LEE +IE +K
Sbjct: 232 LRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELY 291
Query: 60 EMSKLRRDLEEANIQHESTLANLRKKHNDAVSEMGEQIDQLNKLKTNKEEATTEKVLKQL 119
++ LE+ LANL ++ + +++ E +L++L E E+ L++L
Sbjct: 292 ALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAEL--EEKLEEL 349
Query: 120 KHQLNEVQSRLDEANRTINDL 140
K +L +++ L+E + +L
Sbjct: 350 KEELESLEAELEELEAELEEL 370
Score = 28.1 bits (63), Expect = 2.4
Identities = 34/152 (22%), Positives = 66/152 (43%), Gaps = 13/152 (8%)
Query: 2 QARIYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEM 61
Q +Y L E+ Q + ++ A+L R+LEEL +LEE E + E ++
Sbjct: 287 QKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKL 346
Query: 62 SKLRRDLEEANIQHESTLANLRKKHNDAVSEMGEQIDQLNKLKTNKEEATTEKVLKQLKH 121
+L+ +LE + E L ++ + E+ EQ++ L + QL+
Sbjct: 347 EELKEELESLEAELE-ELEAELEELESRLEELEEQLETLRSK------------VAQLEL 393
Query: 122 QLNEVQSRLDEANRTINDLDVARKKLIIETTE 153
Q+ + + ++ + L+ R++L E E
Sbjct: 394 QIASLNNEIERLEARLERLEDRRERLQQEIEE 425
Score = 26.9 bits (60), Expect = 4.9
Identities = 25/141 (17%), Positives = 55/141 (39%), Gaps = 2/141 (1%)
Query: 7 ELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRR 66
E E E E + +Q + + L E + L + + ++R + +
Sbjct: 775 EELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIA 834
Query: 67 DLEEANIQHESTLANLRKKHNDAVSEMGEQIDQLNKLKTNKEEATTEKVLKQLKHQLNEV 126
E E + L + +E+ E + + +L++ E E+ L+ L +
Sbjct: 835 ATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNER--ASLEEALALL 892
Query: 127 QSRLDEANRTINDLDVARKKL 147
+S L+E + + +L+ R +L
Sbjct: 893 RSELEELSEELRELESKRSEL 913
Score = 26.2 bits (58), Expect = 8.4
Identities = 33/141 (23%), Positives = 55/141 (39%), Gaps = 12/141 (8%)
Query: 2 QARIYELEEEVEVERQSRAKAEKQRADLARELEEL----------GERLEEAGGATSAQI 51
+A + L EE R+ E++ A R LE+L E L I
Sbjct: 809 RAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELI 868
Query: 52 ELNKKREAEMSKLRRDLEEANIQHESTLANLRKKHNDAVSEMGEQIDQLNKLKTNKEEAT 111
E + + R LEEA S L L ++ + S+ E +L +L+ +
Sbjct: 869 EELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLE 928
Query: 112 TEKVLKQLKHQLNEVQSRLDE 132
L+ L+ +++ +Q RL E
Sbjct: 929 LR--LEGLEVRIDNLQERLSE 947
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC,
primarily archaeal type. SMC (structural maintenance of
chromosomes) proteins bind DNA and act in organizing and
segregating chromosomes for partition. SMC proteins are
found in bacteria, archaea, and eukaryotes. It is found
in a single copy and is homodimeric in prokaryotes, but
six paralogs (excluded from this family) are found in
eukarotes, where SMC proteins are heterodimeric. This
family represents the SMC protein of archaea and a few
bacteria (Aquifex, Synechocystis, etc); the SMC of other
bacteria is described by TIGR02168. The N- and
C-terminal domains of this protein are well conserved,
but the central hinge region is skewed in composition
and highly divergent [Cellular processes, Cell division,
DNA metabolism, Chromosome-associated proteins].
Length = 1164
Score = 35.0 bits (81), Expect = 0.010
Identities = 33/140 (23%), Positives = 63/140 (45%), Gaps = 8/140 (5%)
Query: 2 QARIYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEM 61
+ I E E E+E + AK E + L E+EEL +EE E + + E+
Sbjct: 307 ERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEEL 366
Query: 62 SKLRRDLEEANIQHEST---LANLRKKHNDAVSEMGEQIDQLNKLKTNKEEATTEKV--- 115
LR +LEE + + T L + R+K E+ E +L++L+ + + E
Sbjct: 367 EDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLN 426
Query: 116 --LKQLKHQLNEVQSRLDEA 133
+ ++ ++NE++ ++
Sbjct: 427 AAIAGIEAKINELEEEKEDK 446
Score = 34.7 bits (80), Expect = 0.012
Identities = 30/130 (23%), Positives = 66/130 (50%), Gaps = 6/130 (4%)
Query: 3 ARIYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEMS 62
AR+ E+E+++ + EK+ +L + +L E+++ +IE ++ E+
Sbjct: 812 ARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIE----KEIENLNGKKEELE 867
Query: 63 KLRRDLEEANIQHESTLANLRKKHNDAVSEMGEQIDQLNKLKTNKEEATTEKVLKQLKHQ 122
+ +LE A ES L +L+K+ ++ +++ E ++ +L+ E+ K L +LK +
Sbjct: 868 EELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKK--RKRLSELKAK 925
Query: 123 LNEVQSRLDE 132
L ++ L E
Sbjct: 926 LEALEEELSE 935
Score = 28.5 bits (64), Expect = 1.9
Identities = 27/151 (17%), Positives = 70/151 (46%), Gaps = 14/151 (9%)
Query: 1 MQARIYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAE 60
++ R+ L+ E+ + + E + +L++EL + ++ E +IE ++ E +
Sbjct: 679 LRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEI----EKEIEQLEQEEEK 734
Query: 61 MSKLRRDLEEANIQHESTLANLRKKHNDAVSEMGEQIDQLNKLKTNKEE----------A 110
+ + +LEE E + N++ + + + + E + L+KL+ +
Sbjct: 735 LKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHSRIP 794
Query: 111 TTEKVLKQLKHQLNEVQSRLDEANRTINDLD 141
+ L +L+ +++ +++RL E + +N L
Sbjct: 795 EIQAELSKLEEEVSRIEARLREIEQKLNRLT 825
Score = 27.0 bits (60), Expect = 4.6
Identities = 29/148 (19%), Positives = 57/148 (38%), Gaps = 11/148 (7%)
Query: 3 ARIYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIE---------L 53
YEL +E E + + E+Q A L ELE+L E + E +IE +
Sbjct: 223 YEGYELLKEKEALERQKEAIERQLASLEEELEKLTEEISEL-EKRLEEIEQLLEELNKKI 281
Query: 54 NKKREAEMSKLRRDLEEANIQHESTLANLR-KKHNDAVSEMGEQIDQLNKLKTNKEEATT 112
E E +++ + E + S ++ K+ +E + K E
Sbjct: 282 KDLGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEEL 341
Query: 113 EKVLKQLKHQLNEVQSRLDEANRTINDL 140
E+ +++ + + +++ E + DL
Sbjct: 342 EREIEEERKRRDKLTEEYAELKEELEDL 369
Score = 26.6 bits (59), Expect = 6.1
Identities = 25/130 (19%), Positives = 56/130 (43%), Gaps = 2/130 (1%)
Query: 2 QARIYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEM 61
Q + +L+E+++ + ++ +L ELEEL L + + + EA++
Sbjct: 839 QEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQL 898
Query: 62 SKLRRDLEEANIQHESTLANLRKKHNDAVSEMGEQIDQLNKLKTN-KEEATTEKVLKQLK 120
+L R +EE Q E + + + E++ ++ K +E E L+ ++
Sbjct: 899 RELERKIEELEAQIE-KKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEELSLEDVQ 957
Query: 121 HQLNEVQSRL 130
+L V+ +
Sbjct: 958 AELQRVEEEI 967
Score = 26.2 bits (58), Expect = 8.4
Identities = 37/172 (21%), Positives = 76/172 (44%), Gaps = 23/172 (13%)
Query: 2 QARIYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAG-----------GATSAQ 50
+ ++ LEEE+E + ++ EK+ ++ + LEEL +++++ G G A+
Sbjct: 243 ERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEAE 302
Query: 51 IELNKKREAEMSKLRRDLEEANIQHESTLANLRKKHNDAVSEMGEQIDQLNKLKTNKEEA 110
I ++ AE + D EE + E+ + L + + E+ E+ + +KL E
Sbjct: 303 IASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAEL 362
Query: 111 TTE------------KVLKQLKHQLNEVQSRLDEANRTINDLDVARKKLIIE 150
E K + + +L + + +L++ R IN+L +L E
Sbjct: 363 KEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEE 414
Score = 26.2 bits (58), Expect = 9.5
Identities = 30/150 (20%), Positives = 66/150 (44%), Gaps = 9/150 (6%)
Query: 1 MQARIYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAE 60
+ EL+EE+E R + +K+ A+ EL++ E+LE+ +I K+
Sbjct: 355 LTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLK----REINELKRELDR 410
Query: 61 MSKLRRDLEEANIQHESTLANLRKKHNDAVSEMGEQIDQLNKLKTNKEE-----ATTEKV 115
+ + + L E + +A + K N+ E ++ ++ K + E+ + E+
Sbjct: 411 LQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQE 470
Query: 116 LKQLKHQLNEVQSRLDEANRTINDLDVARK 145
L LK + + V+ L + R + + + +
Sbjct: 471 LYDLKEEYDRVEKELSKLQRELAEAEAQAR 500
>gnl|CDD|236508 PRK09426, PRK09426, methylmalonyl-CoA mutase; Reviewed.
Length = 714
Score = 34.8 bits (81), Expect = 0.011
Identities = 35/118 (29%), Positives = 52/118 (44%), Gaps = 23/118 (19%)
Query: 14 VERQSRAKAEKQRADLARELEELG------------ERLEEAGGATSAQIELNKKREAEM 61
VE + AEK A E+E LG R+EEA T A+I+ K+ +
Sbjct: 399 VESLTHELAEKAWA-HIEEVEALGGMAKAIEAGIPKLRIEEAAARTQARIDSGKQVIVGV 457
Query: 62 SKLRRDLEEANIQHESTLANLRKKHNDAVSEMGEQIDQLNKLKTNKEEATTEKVLKQL 119
+K R D E+ ++ + N AV EQI +L +L+ ++EA E L L
Sbjct: 458 NKYRLDKEDP--------IDVLEVDNTAVRA--EQIARLERLRAERDEAAVEAALAAL 505
>gnl|CDD|130902 TIGR01843, type_I_hlyD, type I secretion membrane fusion protein,
HlyD family. Type I secretion is an ABC transport
process that exports proteins, without cleavage of any
signal sequence, from the cytosol to extracellular
medium across both inner and outer membranes. The
secretion signal is found in the C-terminus of the
transported protein. This model represents the adaptor
protein between the ATP-binding cassette (ABC) protein
of the inner membrane and the outer membrane protein,
and is called the membrane fusion protein. This model
selects a subfamily closely related to HlyD; it is
defined narrowly and excludes, for example, colicin V
secretion protein CvaA and multidrug efflux proteins
[Protein fate, Protein and peptide secretion and
trafficking].
Length = 423
Score = 33.1 bits (76), Expect = 0.039
Identities = 34/158 (21%), Positives = 66/158 (41%), Gaps = 9/158 (5%)
Query: 1 MQARIYELEEEVEVERQS-RAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREA 59
+ A + E ++ ++ ++ RA L L ++ + E G + L ++ E
Sbjct: 117 LSAEDPAVPELIKGQQSLFESRKSTLRAQLELILAQIKQLEAELAGLQAQLQALRQQLEV 176
Query: 60 EMSKL--RRDLEEANIQHESTLANLRKKHNDAVSEMGEQIDQLNKLKTNKEEA------T 111
+L RR L+E + L L ++ +A E+G +L LK +E
Sbjct: 177 ISEELEARRKLKEKGLVSRLELLELERERAEAQGELGRLEAELEVLKRQIDELQLERQQI 236
Query: 112 TEKVLKQLKHQLNEVQSRLDEANRTINDLDVARKKLII 149
+ +++ +L E Q+RL E +N ++LII
Sbjct: 237 EQTFREEVLEELTEAQARLAELRERLNKARDRLQRLII 274
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and
chromosome partitioning].
Length = 1163
Score = 32.8 bits (75), Expect = 0.055
Identities = 37/147 (25%), Positives = 74/147 (50%), Gaps = 6/147 (4%)
Query: 1 MQARIYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAE 60
++A++ +LEEE++ + E +L R+LEEL +LEE ++ ++ +
Sbjct: 679 LEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKR----ELAALEEELEQ 734
Query: 61 MSKLRRDLEEANIQHESTLANLRKKHNDAVSEMGEQIDQLNKLKTNKEEATTEKVLKQLK 120
+ +LEE + E L L+++ + E+ + L KLK EE ++ + L+
Sbjct: 735 LQSRLEELEEELEELEEELEELQERLEELEEELESLEEALAKLKEEIEELEEKR--QALQ 792
Query: 121 HQLNEVQSRLDEANRTINDLDVARKKL 147
+L E++ L+EA R ++ L+ + L
Sbjct: 793 EELEELEEELEEAERRLDALERELESL 819
Score = 32.8 bits (75), Expect = 0.056
Identities = 35/155 (22%), Positives = 75/155 (48%), Gaps = 9/155 (5%)
Query: 1 MQARIYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAE 60
+Q R+ ELEEE+E ++ AK +++ +L + + L E LEE ++E ++R
Sbjct: 756 LQERLEELEEELESLEEALAKLKEEIEELEEKRQALQEELEE----LEEELEEAERRLDA 811
Query: 61 MSKLRRDLEEANIQHESTLANLRKKHNDAVSEMGEQIDQLNKLKTNKEEA-----TTEKV 115
+ + LE+ + E + L ++ + ++ E ++L +L+ EE E
Sbjct: 812 LERELESLEQRRERLEQEIEELEEEIEELEEKLDELEEELEELEKELEELKEELEELEAE 871
Query: 116 LKQLKHQLNEVQSRLDEANRTINDLDVARKKLIIE 150
++L+ +L E++ +E + +L+ +L E
Sbjct: 872 KEELEDELKELEEEKEELEEELRELESELAELKEE 906
Score = 32.0 bits (73), Expect = 0.098
Identities = 36/146 (24%), Positives = 64/146 (43%), Gaps = 4/146 (2%)
Query: 2 QARIYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEM 61
+ R+ LE E+E Q R + E++ +L E+EEL E+L+E ++E +K E+
Sbjct: 806 ERRLDALERELESLEQRRERLEQEIEELEEEIEELEEKLDEL----EEELEELEKELEEL 861
Query: 62 SKLRRDLEEANIQHESTLANLRKKHNDAVSEMGEQIDQLNKLKTNKEEATTEKVLKQLKH 121
+ +LE + E L L ++ + E+ E +L +LK E+ + K
Sbjct: 862 KEELEELEAEKEELEDELKELEEEKEELEEELRELESELAELKEEIEKLRERLEELEAKL 921
Query: 122 QLNEVQSRLDEANRTINDLDVARKKL 147
+ EV+ E D +L
Sbjct: 922 ERLEVELPELEEELEEEYEDTLETEL 947
Score = 32.0 bits (73), Expect = 0.11
Identities = 34/153 (22%), Positives = 73/153 (47%), Gaps = 5/153 (3%)
Query: 1 MQARIYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAE 60
++ ++ EL+ E+ + + + + +L ELEEL E LEE E + E
Sbjct: 714 LERQLEELKRELAALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEA 773
Query: 61 MSKLRRDLEEAN---IQHESTLANLRKKHNDAVSEMGEQIDQLNKLKTNKEEATTEKVLK 117
++KL+ ++EE + L L ++ +A + +L L+ +E E ++
Sbjct: 774 LAKLKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQE--IE 831
Query: 118 QLKHQLNEVQSRLDEANRTINDLDVARKKLIIE 150
+L+ ++ E++ +LDE + +L+ ++L E
Sbjct: 832 ELEEEIEELEEKLDELEEELEELEKELEELKEE 864
Score = 31.6 bits (72), Expect = 0.14
Identities = 38/151 (25%), Positives = 69/151 (45%), Gaps = 5/151 (3%)
Query: 2 QARIYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKR---- 57
+ +I L+EE+E + E+ A+L EEL E+L E ++
Sbjct: 329 KEKIEALKEELEERETLLEELEQLLAELEEAKEELEEKLSALLEELEELFEALREELAEL 388
Query: 58 EAEMSKLRRDLEEANIQHESTLANLRKKHNDAVSEMGEQIDQLNKLKTNKEE-ATTEKVL 116
EAE++++R +LEE + ES L + E + +L+ + E + L
Sbjct: 389 EAELAEIRNELEELKREIESLEERLERLSERLEDLKEELKELEAELEELQTELEELNEEL 448
Query: 117 KQLKHQLNEVQSRLDEANRTINDLDVARKKL 147
++L+ QL E++ RL E R + +L ++L
Sbjct: 449 EELEEQLEELRDRLKELERELAELQEELQRL 479
Score = 29.3 bits (66), Expect = 0.78
Identities = 34/159 (21%), Positives = 70/159 (44%), Gaps = 12/159 (7%)
Query: 1 MQARIYELEEEVEVERQSRAKAEKQRADLARELEELG---ERLEEAGGATSAQIELNKKR 57
+Q + E E+E+E + + ++ +L EL EL E LE ++E +
Sbjct: 258 LQEELEEAEKEIEELKSELEELREELEELQEELLELKEEIEELEGEISLLRERLEELENE 317
Query: 58 EAEMSKLRRDLEEANIQHESTLA---NLRKKHNDAVSEMGEQIDQLNKLKTNKEEATTEK 114
E+ + +L+E + L L ++ ++E+ E ++L + + E E
Sbjct: 318 LEELEERLEELKEKIEALKEELEERETLLEELEQLLAELEEAKEELEEKLSALLEELEEL 377
Query: 115 V------LKQLKHQLNEVQSRLDEANRTINDLDVARKKL 147
L +L+ +L E+++ L+E R I L+ ++L
Sbjct: 378 FEALREELAELEAELAEIRNELEELKREIESLEERLERL 416
Score = 28.9 bits (65), Expect = 1.1
Identities = 33/147 (22%), Positives = 66/147 (44%), Gaps = 9/147 (6%)
Query: 1 MQARIYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAE 60
++ R+ ELE E+E + + +++ L ELEE LEE + ++ + E
Sbjct: 307 LRERLEELENELEELEERLEELKEKIEALKEELEERETLLEEL----EQLLAELEEAKEE 362
Query: 61 MSKLRRDLEEANIQHESTLANLRKKHNDAVSEMGEQIDQLNKLKTNKEEATTEKVLKQLK 120
+ + L E E LR++ + +E+ E ++L +LK E L++L
Sbjct: 363 LEEKLSALLEE---LEELFEALREELAELEAELAEIRNELEELKREIESLEER--LERLS 417
Query: 121 HQLNEVQSRLDEANRTINDLDVARKKL 147
+L +++ L E + +L ++L
Sbjct: 418 ERLEDLKEELKELEAELEELQTELEEL 444
Score = 27.0 bits (60), Expect = 4.7
Identities = 29/153 (18%), Positives = 61/153 (39%)
Query: 1 MQARIYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAE 60
+ A++ EL +E+E + ++ E++ +L ELEE + +EE E ++ + E
Sbjct: 230 LLAKLKELRKELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEELQEE 289
Query: 61 MSKLRRDLEEANIQHESTLANLRKKHNDAVSEMGEQIDQLNKLKTNKEEATTEKVLKQLK 120
+ +L+ ++EE + L + N+ + K++ KEE + L +
Sbjct: 290 LLELKEEIEELEGEISLLRERLEELENELEELEERLEELKEKIEALKEELEERETLLEEL 349
Query: 121 HQLNEVQSRLDEANRTINDLDVARKKLIIETTE 153
QL E + + + E
Sbjct: 350 EQLLAELEEAKEELEEKLSALLEELEELFEALR 382
Score = 26.6 bits (59), Expect = 6.8
Identities = 31/141 (21%), Positives = 60/141 (42%), Gaps = 1/141 (0%)
Query: 14 VERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRRDLEEANI 73
++S +++ +L EL EL +LE+ + + E + +LRR LEE
Sbjct: 657 RNKRSSLAQKRELKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELER 716
Query: 74 QHESTLANLRKKHNDAVSEMGEQIDQLNKLKTNKEEATT-EKVLKQLKHQLNEVQSRLDE 132
Q E L + + +L+ +EE ++ L++L+ +L ++ L +
Sbjct: 717 QLEELKRELAALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALAK 776
Query: 133 ANRTINDLDVARKKLIIETTE 153
I +L+ R+ L E E
Sbjct: 777 LKEEIEELEEKRQALQEELEE 797
>gnl|CDD|217817 pfam03961, DUF342, Protein of unknown function (DUF342). This
family of bacterial proteins has no known function. The
proteins are in the region of 500-600 amino acid
residues in length.
Length = 450
Score = 31.8 bits (73), Expect = 0.10
Identities = 25/95 (26%), Positives = 48/95 (50%), Gaps = 8/95 (8%)
Query: 42 EAGGATSAQIELN----KKREAEMSKLRRDLEEANIQHESTLANLRKKHNDAVSEMGEQI 97
AG T ++ ++ K+ E+ + ++LEE + + L L KK + E+
Sbjct: 316 PAGTKTEIEVGVDFPELKEELKELEEELKELEEELEKIKKLLKKLPKKARGQLPP--EKR 373
Query: 98 DQLNKLKTNKEEATTEKVLKQLKHQLNEVQSRLDE 132
+QL KL KE+ + E L++L+ +L E++ L+
Sbjct: 374 EQLEKLLETKEKLSEE--LEELEEELKELKEELES 406
>gnl|CDD|217933 pfam04156, IncA, IncA protein. Chlamydia trachomatis is an
obligate intracellular bacterium that develops within a
parasitophorous vacuole termed an inclusion. The
inclusion is non-fusogenic with lysosomes but intercepts
lipids from a host cell exocytic pathway. Initiation of
chlamydial development is concurrent with modification
of the inclusion membrane by a set of C.
trachomatis-encoded proteins collectively designated
Incs. One of these Incs, IncA, is functionally
associated with the homotypic fusion of inclusions. This
family probably includes members of the wider Inc family
rather than just IncA.
Length = 186
Score = 31.3 bits (71), Expect = 0.11
Identities = 25/122 (20%), Positives = 52/122 (42%), Gaps = 6/122 (4%)
Query: 9 EEEVEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRRDL 68
+++E + ++ ++Q ++L ELE+L ER+ E E + + L L
Sbjct: 71 PQKLEELQGELSELKQQLSELQEELEDLEERIAELESELEDLKEDLQLLRELLKSLEERL 130
Query: 69 EEANIQHESTLANLRKKHNDAVSEMGEQIDQLNKLKTNKEEATTEKVLKQLKHQLNEVQS 128
E + LR+ D E+ E ++L +L+ N + L++ +L +
Sbjct: 131 ESLEESIKELAKELRELRQDLREEVEELREELERLQENLQR------LQEAIQELQSLLE 184
Query: 129 RL 130
+L
Sbjct: 185 QL 186
>gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional.
Length = 520
Score = 31.7 bits (73), Expect = 0.12
Identities = 30/107 (28%), Positives = 54/107 (50%), Gaps = 9/107 (8%)
Query: 19 RAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRRDLEEANIQHEST 78
R + EK+ + EL++L +RL + ++EL +KRE E+ K ++LE+ + E
Sbjct: 70 RNEFEKELRERRNELQKLEKRLLQKEENLDRKLELLEKREEELEKKEKELEQKQQELEKK 129
Query: 79 LANLRKKHNDAVSEMGEQIDQLNKLKTNKEEATT---EKVLKQLKHQ 122
L + + + E+ E+I L EEA EKV ++ +H+
Sbjct: 130 EEELEELIEEQLQEL-ERISGL-----TAEEAKEILLEKVEEEARHE 170
>gnl|CDD|236912 PRK11448, hsdR, type I restriction enzyme EcoKI subunit R;
Provisional.
Length = 1123
Score = 31.8 bits (73), Expect = 0.14
Identities = 17/92 (18%), Positives = 34/92 (36%), Gaps = 7/92 (7%)
Query: 7 ELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRR 66
L++EV +Q Q ARE + E A L + E + +L
Sbjct: 146 ALQQEVLTLKQ-------QLELQAREKAQSQALAEAQQQELVALEGLAAELEEKQQELEA 198
Query: 67 DLEEANIQHESTLANLRKKHNDAVSEMGEQID 98
LE+ + T ++K + + ++++
Sbjct: 199 QLEQLQEKAAETSQERKQKRKEITDQAAKRLE 230
Score = 26.8 bits (60), Expect = 6.1
Identities = 17/83 (20%), Positives = 35/83 (42%), Gaps = 3/83 (3%)
Query: 23 EKQRADLARELEELGERLEEAGGA---TSAQIELNKKREAEMSKLRRDLEEANIQHESTL 79
E L +E+ L ++LE + A E ++ + L +LEE + E+ L
Sbjct: 141 ENLLHALQQEVLTLKQQLELQAREKAQSQALAEAQQQELVALEGLAAELEEKQQELEAQL 200
Query: 80 ANLRKKHNDAVSEMGEQIDQLNK 102
L++K + E ++ ++
Sbjct: 201 EQLQEKAAETSQERKQKRKEITD 223
Score = 26.8 bits (60), Expect = 6.3
Identities = 16/68 (23%), Positives = 30/68 (44%), Gaps = 3/68 (4%)
Query: 7 ELEEEVEVERQSRAKAEKQRADLARELEELGERLE---EAGGATSAQIELNKKREAEMSK 63
+ + E ++Q E A+L + +EL +LE E TS + + +K + +
Sbjct: 167 QSQALAEAQQQELVALEGLAAELEEKQQELEAQLEQLQEKAAETSQERKQKRKEITDQAA 226
Query: 64 LRRDLEEA 71
R +L E
Sbjct: 227 KRLELSEE 234
>gnl|CDD|184281 PRK13729, PRK13729, conjugal transfer pilus assembly protein TraB;
Provisional.
Length = 475
Score = 31.3 bits (71), Expect = 0.17
Identities = 13/49 (26%), Positives = 22/49 (44%)
Query: 1 MQARIYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGGATSA 49
MQ +++++ E R+ KQR D R +E+LG+ A
Sbjct: 74 MQVTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQVKA 122
>gnl|CDD|234750 PRK00409, PRK00409, recombination and DNA strand exchange inhibitor
protein; Reviewed.
Length = 782
Score = 31.3 bits (72), Expect = 0.19
Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
Query: 88 DAVSEMGEQIDQLNKLKTNKEEATTEKVLKQLKHQLNEVQSRLDEANRTINDLDVA 143
+V E+ +I +L NKEE E++LK+L ++ + L N+ ++LD
Sbjct: 227 QSVVELNNEIREL----RNKEEQEIERILKELSAKVAKNLDFLKFLNKIFDELDFI 278
Score = 27.5 bits (62), Expect = 3.2
Identities = 23/124 (18%), Positives = 52/124 (41%), Gaps = 13/124 (10%)
Query: 7 ELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRR 66
+L E + + + E++ + L+E E+L+E EL +K+E + +
Sbjct: 517 KLNELIASLEELERELEQKAEEAEALLKEA-EKLKE---------ELEEKKEKLQEEEDK 566
Query: 67 DLEEANIQHESTLANLRKKHNDAVSEMGEQIDQLNKLKTNKEEATTEKVLKQLKHQLNEV 126
LEEA + + + +K+ ++ + E+ + Q + K E K+L +
Sbjct: 567 LLEEAEKEAQQAIKEAKKEADEIIKELRQL--QKGGYASVKAHELIEA-RKRLNKANEKK 623
Query: 127 QSRL 130
+ +
Sbjct: 624 EKKK 627
>gnl|CDD|191367 pfam05761, 5_nucleotid, 5' nucleotidase family. This family of
eukaryotic proteins includes 5' nucleotidase enzymes,
such as purine 5'-nucleotidase EC:3.1.3.5.
Length = 448
Score = 31.1 bits (71), Expect = 0.22
Identities = 19/68 (27%), Positives = 29/68 (42%), Gaps = 16/68 (23%)
Query: 5 IYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEMSKL 64
+ ELE E+E+ + + E+ + L+ L ERL AE+S L
Sbjct: 323 VPELEREIEIWNTEQYRFEELQ-----RLDILLERLY----DHLDVH-------AELSTL 366
Query: 65 RRDLEEAN 72
R DL E +
Sbjct: 367 RPDLSELD 374
>gnl|CDD|234172 TIGR03345, VI_ClpV1, type VI secretion ATPase, ClpV1 family.
Members of this protein family are homologs of ClpB, an
ATPase associated with chaperone-related functions.
These ClpB homologs, designated ClpV1, are a key
component of the bacterial pathogenicity-associated type
VI secretion system [Protein fate, Protein and peptide
secretion and trafficking, Cellular processes,
Pathogenesis].
Length = 852
Score = 31.1 bits (71), Expect = 0.22
Identities = 19/82 (23%), Positives = 28/82 (34%), Gaps = 8/82 (9%)
Query: 1 MQARIYELEEEVEVERQSRAKAEK---QRADLARELEELGERLEEAGGATSAQIELNKKR 57
R+ EL E+ A E Q +L + L LE A +
Sbjct: 448 HDERLAELRAELAALEAELAALEARWQQEKELVEAILALRAELEADADAPADDDAA---L 504
Query: 58 EAEMSKLRRDLEEANIQHESTL 79
A++++L L A Q E L
Sbjct: 505 RAQLAELEAALASA--QGEEPL 524
>gnl|CDD|239651 cd03679, MM_CoA_mutase_alpha_like, Coenzyme
B12-dependent-methylmalonyl coenzyme A (CoA) mutase
(MCM) family, Alpha subunit-like subfamily; contains
proteins similar to the alpha subunit of
Propionbacterium shermanni MCM, as well as human and E.
coli MCM. Members of this subfamily contain an
N-terminal MCM domain and a C-terminal coenzyme B12
binding domain. MCM catalyzes the isomerization of
methylmalonyl-CoA to succinyl-CoA. The reaction proceeds
via radical intermediates beginning with a
substrate-induced homolytic cleavage of the Co-C bond of
coenzyme B12 to produce cob(II)alamin and the
deoxyadenosyl radical. MCM plays an important role in
the conversion of propionyl-CoA to succinyl-CoA during
the degradation of propionate for the Krebs cycle. In
higher animals, MCM is involved in the breakdown of
odd-chain fatty acids, several amino acids, and
cholesterol. Methylobacterium extorquens MCM
participates in the glyoxylate regeneration pathway. In
M. extorquens, MCM forms a complex with MeaB; MeaB may
protect MCM from irreversible inactivation. In some
bacteria, MCM is involved in the reverse metabolic
reaction, the rearrangement of succinyl-CoA to
methylmalonyl-CoA. Examples include P. shermanni MCM
during propionic acid fermentation, E.coli MCM in a
pathway for the conversion of succinate to propionate
and Streptomyces MCM in polyketide biosynthesis.
Sinorhizobium meliloti strain SU47 MCM plays a role in
the polyhydroxyalkanoate degradation pathway. P.
shermanni and Streptomyces cinnamonensis MCMs are
alpha/beta heterodimers. It has been shown for P.
shermanni MCM that only the alpha subunit binds coenzyme
B12 and substrates. Human MCM is a homodimer with two
active sites. Mouse and E.coli MCMs are also homodimers.
In humans, impaired activity of MCM results in
methylmalonic aciduria, a disorder of propionic acid
metabolism.
Length = 536
Score = 30.4 bits (69), Expect = 0.36
Identities = 33/120 (27%), Positives = 51/120 (42%), Gaps = 23/120 (19%)
Query: 14 VERQSRAKAEKQRADLARELEELG------------ERLEEAGGATSAQIELNKKREAEM 61
+E + AEK A + E+EELG R+EEA A+I+ ++ +
Sbjct: 393 MESLTDDLAEKAWALIQ-EIEELGGMAKAIESGIPKLRIEEAAARRQARIDSGREVIVGV 451
Query: 62 SKLRRDLEEANIQHESTLANLRKKHNDAVSEMGEQIDQLNKLKTNKEEATTEKVLKQLKH 121
+K R D EE + + K N AV EQI +L KL+ ++ + L L
Sbjct: 452 NKYRLDHEE---PLD-----VLKIDNTAVRA--EQIARLKKLRAERDPEAVQAALDALTE 501
>gnl|CDD|182871 PRK10966, PRK10966, exonuclease subunit SbcD; Provisional.
Length = 407
Score = 30.3 bits (69), Expect = 0.39
Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 5/41 (12%)
Query: 1 MQARIYELEEEVEVE----RQSRAKAEKQRADLARE-LEEL 36
+Q RI L E + VE R+SR + E+ A RE L EL
Sbjct: 326 IQRRIQALTESLPVEVLLVRRSREQRERSLASEQRETLSEL 366
>gnl|CDD|215656 pfam00012, HSP70, Hsp70 protein. Hsp70 chaperones help to fold
many proteins. Hsp70 assisted folding involves repeated
cycles of substrate binding and release. Hsp70 activity
is ATP dependent. Hsp70 proteins are made up of two
regions: the amino terminus is the ATPase domain and the
carboxyl terminus is the substrate binding region.
Length = 598
Score = 30.3 bits (69), Expect = 0.40
Identities = 20/106 (18%), Positives = 48/106 (45%), Gaps = 9/106 (8%)
Query: 38 ERLEEAGGATSAQIE-LNKKRE--AEMSKLRRDLEEANIQHESTLANLRKKHNDAVSEMG 94
+ + G + +IE + K E A K R++ EA + E + +L K + E G
Sbjct: 493 ITITASSGLSDDEIERMVKDAEEYAAEDKKRKERIEAKNEAEEYVYSLEKS----LKEEG 548
Query: 95 EQIDQLNKLKTNKEEATTEKVLKQLKHQLNEVQSRLDEANRTINDL 140
+++ + +K K + ++ L+ E++++ +E + + +
Sbjct: 549 DKLPEADKKKVEEAIEWLKEELE--GEDKEEIEAKTEELQKVVQPI 592
>gnl|CDD|232965 TIGR00414, serS, seryl-tRNA synthetase. This model represents the
seryl-tRNA synthetase found in most organisms. This
protein is a class II tRNA synthetase, and is recognized
by the pfam model tRNA-synt_2b. The seryl-tRNA
synthetases of two archaeal species, Methanococcus
jannaschii and Methanobacterium thermoautotrophicum,
differ considerably and are included in a different
model [Protein synthesis, tRNA aminoacylation].
Length = 418
Score = 30.0 bits (68), Expect = 0.51
Identities = 22/90 (24%), Positives = 40/90 (44%), Gaps = 7/90 (7%)
Query: 53 LNKKREAEMSKLRR--DLEEANIQHESTLANLRKKHNDAVSEMGEQIDQLNKLKTNKEEA 110
L + + L + L++ + S + L+ K N E+ +QI + K +K E
Sbjct: 18 LKARGLSVDIDLEKLIALDDERKKLLSEIEELQAKRN----ELSKQIGKAKGQKKDKIE- 72
Query: 111 TTEKVLKQLKHQLNEVQSRLDEANRTINDL 140
+K LK+LK +L E+ + L + D
Sbjct: 73 EIKKELKELKEELTELSAALKALEAELQDK 102
>gnl|CDD|224188 COG1269, NtpI, Archaeal/vacuolar-type H+-ATPase subunit I [Energy
production and conversion].
Length = 660
Score = 29.6 bits (67), Expect = 0.66
Identities = 15/72 (20%), Positives = 27/72 (37%), Gaps = 5/72 (6%)
Query: 3 ARIYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEA----GGATSAQIELNKKRE 58
+YE+ E + ++ E+ A++ ELE L LE A E+ + E
Sbjct: 215 FELYEVPEFDGGPSELISELEEVIAEIQDELESLRSELEALAEKIAEELLAVREI-LEIE 273
Query: 59 AEMSKLRRDLEE 70
+ + L
Sbjct: 274 KALGDVLSKLAR 285
Score = 29.3 bits (66), Expect = 0.88
Identities = 34/173 (19%), Positives = 70/173 (40%), Gaps = 27/173 (15%)
Query: 5 IYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEA-------------GGATSAQI 51
I E+ + K E++ ++L ELE+L + LEE G +
Sbjct: 101 IKPAEKFSSEVEELTRKLEERLSELDEELEDLEDLLEELEPLAYLDFDLSLLRGLKFLLV 160
Query: 52 ELNKKREAEMSKLRRDLEEA------NIQHESTLANL-RKKHNDAVS----EMGEQIDQL 100
L R ++ L +E+ N++ + + D VS E+G ++ ++
Sbjct: 161 RLGLVRREKLEALVGVIEDEVALYGENVEASVVIVVAHGAEDLDKVSKILNELGFELYEV 220
Query: 101 NKLKTN--KEEATTEKVLKQLKHQLNEVQSRLDEANRTI-NDLDVARKKLIIE 150
+ + + E+V+ +++ +L ++S L+ I +L R+ L IE
Sbjct: 221 PEFDGGPSELISELEEVIAEIQDELESLRSELEALAEKIAEELLAVREILEIE 273
>gnl|CDD|218489 pfam05192, MutS_III, MutS domain III. This domain is found in
proteins of the MutS family (DNA mismatch repair
proteins) and is found associated with pfam00488,
pfam05188, pfam01624 and pfam05190. The MutS family of
proteins is named after the Salmonella typhimurium MutS
protein involved in mismatch repair; other members of
the family included the eukaryotic MSH 1,2,3, 4,5 and 6
proteins. These have various roles in DNA repair and
recombination. Human MSH has been implicated in
non-polyposis colorectal carcinoma (HNPCC) and is a
mismatch binding protein. The aligned region corresponds
with domain III, which is central to the structure of
Thermus aquaticus MutS as characterized in.
Length = 290
Score = 29.3 bits (66), Expect = 0.70
Identities = 27/124 (21%), Positives = 50/124 (40%), Gaps = 6/124 (4%)
Query: 24 KQRADLARELEELGERLEEAGGATSAQIELNKKRE---AEMSKLRRDLEEANIQHESTLA 80
+L +L EL ER E G S ++ N+ E+ + D + ST
Sbjct: 166 ALLDELREKLAELLERERERTGIKSLKVGYNRVFGYYVIEVKASKADKVPGDYIRRSTTK 225
Query: 81 NLRKKHNDAVSEMGEQIDQLNKLKTNKEEATTEKVLKQLKHQLNEVQSRLDEANRTINDL 140
N + + E+ ++ + + E+ E++L+++ L+E L E I +L
Sbjct: 226 NAVRFTTPELKELERKLLEAEERALALEKEILEELLERV---LSEYAELLQELADAIAEL 282
Query: 141 DVAR 144
DV
Sbjct: 283 DVLL 286
>gnl|CDD|219412 pfam07439, DUF1515, Protein of unknown function (DUF1515). This
family consists of several hypothetical bacterial
proteins of around 130 residues in length. Members of
this family seem to be found exclusively in Rhizobium
species. The function of this family is unknown.
Length = 112
Score = 28.4 bits (63), Expect = 0.80
Identities = 15/49 (30%), Positives = 28/49 (57%), Gaps = 3/49 (6%)
Query: 1 MQARIYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGGATSA 49
+QA + L E++ R+S +++ RA + R ++EL ER+ G+ S
Sbjct: 13 LQAEVKNLREDI---RRSEDRSDASRASMYRRMDELVERVTTLEGSVSK 58
>gnl|CDD|219791 pfam08317, Spc7, Spc7 kinetochore protein. This domain is found in
cell division proteins which are required for
kinetochore-spindle association.
Length = 321
Score = 28.8 bits (65), Expect = 0.93
Identities = 21/110 (19%), Positives = 48/110 (43%), Gaps = 2/110 (1%)
Query: 29 LARELEELGERLEEAGGATSAQIELNKKREAEMSKLRRDLEEANIQHESTLANLRKKHND 88
+ R+ E L + L + + + E++ LR+ +E N+ L R++
Sbjct: 159 MKRDEELLNKDLNLINSIKPKLRKKLQALKEEIASLRQLADELNLCDPLELEKARQELRS 218
Query: 89 AVSEMGEQIDQLNKLKTNKEEATTEKVLKQLKHQLNEVQSRLDEANRTIN 138
++ E+ QL +L+ +E T ++ L ++ +E+ + EA +
Sbjct: 219 LSVKISEKRKQLEELQQELQELTIA--IEALTNKKSELLEEIAEAEKIRE 266
>gnl|CDD|234342 TIGR03752, conj_TIGR03752, integrating conjugative element protein,
PFL_4705 family. Members of this protein family are
found occasionally on plasmids such as the Pseudomonas
putida toluene catabolic TOL plasmid pWWO_p085. Usually,
however, they are found on the bacterial main chromosome
in regions flanked by markers of conjugative transfer
and/or transposition [Mobile and extrachromosomal
element functions, Plasmid functions].
Length = 472
Score = 28.5 bits (64), Expect = 1.5
Identities = 21/85 (24%), Positives = 44/85 (51%), Gaps = 11/85 (12%)
Query: 59 AEMSKLRRDLEEANIQHESTLA---NLRKKHNDAVSEMGEQIDQLNKLKTNKEEATTEKV 115
AE+ +LR+ L + ++E+ A L+K+ + +QI Q +++ +E T E
Sbjct: 66 AEVKELRKRLAKLISENEALKAENERLQKREQS----IDQQIQQ--AVQSETQELTKEI- 118
Query: 116 LKQLKHQLNEVQSRLDEANRTINDL 140
+QLK + ++Q +D+ R + +
Sbjct: 119 -EQLKSERQQLQGLIDQLQRRLAGV 142
Score = 28.1 bits (63), Expect = 2.0
Identities = 21/111 (18%), Positives = 47/111 (42%), Gaps = 19/111 (17%)
Query: 27 ADLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRRDLEEANIQHESTLANLRKKH 86
L E++EL +RL + I N+ +AE +L++ + + Q + + + +
Sbjct: 62 RTLVAEVKELRKRLAKL-------ISENEALKAENERLQKREQSIDQQIQQAVQSETQ-- 112
Query: 87 NDAVSEMGEQIDQLNKLKTNKEEATTEKVLKQLKHQLNEVQSRLDEANRTI 137
E+ ++I+QL E + ++ QL+ +L V + +
Sbjct: 113 -----ELTKEIEQL-----KSERQQLQGLIDQLQRRLAGVLTGPSGGGSDL 153
>gnl|CDD|220368 pfam09730, BicD, Microtubule-associated protein Bicaudal-D. BicD
proteins consist of three coiled-coiled domains and are
involved in dynein-mediated minus end-directed transport
from the Golgi apparatus to the endoplasmic reticulum
(ER). For full functioning they bind with GSK-3beta
pfam05350 to maintain the anchoring of microtubules to
the centromere. It appears that amino-acid residues
437-617 of BicD and the kinase activity of GSK-3 are
necessary for the formation of a complex between BicD
and GSK-3beta in intact cells.
Length = 711
Score = 28.3 bits (63), Expect = 1.8
Identities = 30/86 (34%), Positives = 47/86 (54%), Gaps = 3/86 (3%)
Query: 1 MQARIYELEEEVEVERQ--SRAKAEKQR-ADLARELEELGERLEEAGGATSAQIELNKKR 57
RI EL+ E++ R S +AE +R + L++EL+E E LE G +I+ K R
Sbjct: 32 YLQRILELQAELKQLRAELSNVQAENERLSSLSQELKEENEMLELQRGRLRDEIKEYKFR 91
Query: 58 EAEMSKLRRDLEEANIQHESTLANLR 83
EA + + +LEE NI + ++ LR
Sbjct: 92 EARLLQDYSELEEENISLQKQVSVLR 117
>gnl|CDD|178335 PLN02734, PLN02734, glycyl-tRNA synthetase.
Length = 684
Score = 28.2 bits (63), Expect = 1.9
Identities = 21/92 (22%), Positives = 32/92 (34%), Gaps = 7/92 (7%)
Query: 61 MSKLRRDLEEANIQHESTLANLR--KKHNDAVSEMGEQIDQLNKLKTNKEEATTEKVLKQ 118
LR L E + +R K +E+ I++L LK K EK L+
Sbjct: 2 EDSLRDALAEKQAAVTAQGNAVRALKASKADKAEIDAAIEKLKALKLEKSAL--EKELQA 59
Query: 119 LKHQLNEV-QSRLDEANRTINDLDVARKKLII 149
+ S+ EA R + R+ I
Sbjct: 60 AVGAGGDGAASK--EAFRQAVVNTLERRLFYI 89
>gnl|CDD|183173 PRK11519, PRK11519, tyrosine kinase; Provisional.
Length = 719
Score = 28.2 bits (63), Expect = 2.0
Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 11/61 (18%)
Query: 89 AVSEMGEQIDQLNK---------LKTNKEEATTE--KVLKQLKHQLNEVQSRLDEANRTI 137
+++ GE +Q+ L+ N E + E K L L QL EV+SRLD A +
Sbjct: 231 SLTYTGEDREQIRDILNSITRNYLEQNIERKSEEASKSLAFLAQQLPEVRSRLDVAENKL 290
Query: 138 N 138
N
Sbjct: 291 N 291
>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional.
Length = 880
Score = 28.1 bits (63), Expect = 2.0
Identities = 40/163 (24%), Positives = 71/163 (43%), Gaps = 19/163 (11%)
Query: 2 QARIYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAG----------GATSAQI 51
+ + LE E+E R++ A+ E++R +LA E+ +L ERLEE G A
Sbjct: 250 REELETLEAEIEDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAEAGLDDADA 309
Query: 52 ELNKKR----EAEMSKLRRDLEEANIQ---HESTLANLRKKHNDAVSEMGEQIDQLNKLK 104
E + R E +LR LEE + H +LR+ +D E ++ +L+
Sbjct: 310 EAVEARREELEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLEERAEELREEAAELE 369
Query: 105 TNKEEATTEKVLKQLKHQLNEVQSRLDEANRTINDLDVARKKL 147
+ EEA ++ + ++ E++ ++E D V
Sbjct: 370 SELEEAREA--VEDRREEIEELEEEIEELRERFGDAPVDLGNA 410
>gnl|CDD|226513 COG4026, COG4026, Uncharacterized protein containing TOPRIM domain,
potential nuclease [General function prediction only].
Length = 290
Score = 28.0 bits (62), Expect = 2.1
Identities = 19/70 (27%), Positives = 37/70 (52%)
Query: 1 MQARIYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAE 60
++ EL+E++E ++ + + K+ +L E EE+ ERL+ S E+ KK E
Sbjct: 133 LKEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGE 192
Query: 61 MSKLRRDLEE 70
+ L++ +E
Sbjct: 193 VYDLKKRWDE 202
>gnl|CDD|137505 PRK09751, PRK09751, putative ATP-dependent helicase Lhr;
Provisional.
Length = 1490
Score = 28.4 bits (63), Expect = 2.1
Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 6/54 (11%)
Query: 5 IYELEEEVE-VERQSRAKAEKQRADLAREL-----EELGERLEEAGGATSAQIE 52
I ++EEE++ + RAK E+ DL REL E+L +R + ++ +E
Sbjct: 871 IRQVEEELQRLAPGRRAKGEEGLFDLLRELGPMTVEDLAQRHTGSSEEVASYLE 924
>gnl|CDD|235316 PRK04863, mukB, cell division protein MukB; Provisional.
Length = 1486
Score = 28.0 bits (63), Expect = 2.5
Identities = 40/135 (29%), Positives = 59/135 (43%), Gaps = 19/135 (14%)
Query: 7 ELEEEVEVERQSRAKAEKQRADLARELEELGER---LEEAGGATSAQIELNKKREAEMSK 63
EL E+ R+ A + + ++AREL EL E LE+ A S + L + + K
Sbjct: 290 ELRRELYTSRRQLAAEQYRLVEMARELAELNEAESDLEQDYQAASDHLNLVQTALRQQEK 349
Query: 64 LRR---DLEEANIQHESTLANLRKKHNDAVSEMGEQIDQLNKLKTNKEEATTEKVLKQLK 120
+ R DLEE + E N+ V E EQ ++ + EA E+V +LK
Sbjct: 350 IERYQADLEELEERLEE--------QNEVVEEADEQQEENE----ARAEAAEEEVD-ELK 396
Query: 121 HQLNEVQSRLDEANR 135
QL + Q LD
Sbjct: 397 SQLADYQQALDVQQT 411
>gnl|CDD|217011 pfam02388, FemAB, FemAB family. The femAB operon codes for two
nearly identical approximately 50-kDa proteins involved
in the formation of the Staphylococcal pentaglycine
interpeptide bridge in peptidoglycan. These proteins are
also considered as a factor influencing the level of
methicillin resistance.
Length = 408
Score = 27.6 bits (62), Expect = 2.5
Identities = 16/67 (23%), Positives = 32/67 (47%), Gaps = 4/67 (5%)
Query: 71 ANIQHESTLANLRKKHNDAVSEMGEQIDQLNKLKTNKEEATTEKVLKQLKHQLNEVQSRL 130
A + + L L++K ++ + ++L K +K + L +L+ QL ++ R+
Sbjct: 236 AYLNFKEYLDELQEKLEKLEKDLAKLEEKLEKNPNSK----KKNKLAELEQQLASLEKRI 291
Query: 131 DEANRTI 137
DEA I
Sbjct: 292 DEAKELI 298
>gnl|CDD|187866 cd09735, Csy1_I-F, CRISPR/Cas system-associated protein Csy1.
CRISPR (Clustered Regularly Interspaced Short
Palindromic Repeats) and associated Cas proteins
comprise a system for heritable host defense by
prokaryotic cells against phage and other foreign DNA;
Large proteins; Predicted subunit of the Cascade
complex; signature gene for I-F subtype; also known as
Csy1 family.
Length = 377
Score = 27.7 bits (62), Expect = 2.7
Identities = 14/54 (25%), Positives = 29/54 (53%), Gaps = 7/54 (12%)
Query: 73 IQHESTLANLRKKHNDAVSEMGEQIDQLNKLK-------TNKEEATTEKVLKQL 119
+ ES LA+L+ A++ + + +QL + + T++ + T+ K+ KQL
Sbjct: 84 VDGESLLAHLQAGDPSALAALADDTEQLEEWRTGFLAVLTSEGKPTSHKLAKQL 137
>gnl|CDD|220312 pfam09611, Cas_Csy1, CRISPR-associated protein (Cas_Csy1). CRISPR
(Clustered Regularly Interspaced Short Palindromic
Repeats) is a widespread family of prokaryotic direct
repeats with spacers of unique sequence between
consecutive repeats. This entry, typified by YPO2465 of
Yersinia pestis, is a CRISPR-associated (Cas) entry
strictly associated with the Ypest subtype of CRISPR/Cas
locus. It is designated Csy1, for CRISPR/Cas Subtype
Ypest protein 1.
Length = 378
Score = 27.7 bits (62), Expect = 2.8
Identities = 14/54 (25%), Positives = 29/54 (53%), Gaps = 7/54 (12%)
Query: 73 IQHESTLANLRKKHNDAVSEMGEQIDQLNKLK-------TNKEEATTEKVLKQL 119
+ ES LA+L+ A++ + + +QL + + T++ + T+ K+ KQL
Sbjct: 85 VDGESLLAHLQAGDPSALAALADDTEQLEEWRTGFLAVLTSEGKPTSHKLAKQL 138
>gnl|CDD|180699 PRK06799, flgK, flagellar hook-associated protein FlgK; Validated.
Length = 431
Score = 27.5 bits (61), Expect = 2.8
Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 10/71 (14%)
Query: 90 VSEMGEQIDQLNKLKTNKE--EATTEKVLKQLKHQLNEVQSRLDEANRTI--------ND 139
+SE G+ QLN+L + EA T + ++ ++ N + L EAN+ I N
Sbjct: 138 ISETGKFTSQLNRLAKGLDELEAQTTEDIEAHVNEFNRLAKSLAEANKKIGQAGTQVPNQ 197
Query: 140 LDVARKKLIIE 150
L R +++ E
Sbjct: 198 LLDERDRILTE 208
>gnl|CDD|235461 PRK05431, PRK05431, seryl-tRNA synthetase; Provisional.
Length = 425
Score = 27.7 bits (63), Expect = 2.8
Identities = 14/61 (22%), Positives = 28/61 (45%), Gaps = 8/61 (13%)
Query: 81 NLRKKHNDAVSEMGEQIDQLNKLKTNKEEATTEKV-LKQLKHQLNEVQSRLDEANRTIND 139
L+ + N E+G + K E+A +K+LK ++ +++ LDE + +
Sbjct: 46 ELQAERNALSKEIG-------QAKRKGEDAEALIAEVKELKEEIKALEAELDELEAELEE 98
Query: 140 L 140
L
Sbjct: 99 L 99
>gnl|CDD|233459 TIGR01541, tape_meas_lam_C, phage tail tape measure protein, lambda
family. This model represents a relatively
well-conserved region near the C-terminus of the tape
measure protein of a lambda and related phage. This
protein, which controls phage tail length, is typically
about 1000 residues in length. Both low-complexity
sequence and insertion/deletion events appear common in
this family. Mutational studies suggest a ruler or
template role in the determination of phage tail length.
Similar behavior is attributed to proteins from
distantly related or unrelated families in other phage
[Mobile and extrachromosomal element functions, Prophage
functions].
Length = 332
Score = 27.5 bits (61), Expect = 3.1
Identities = 15/94 (15%), Positives = 33/94 (35%), Gaps = 8/94 (8%)
Query: 46 ATSAQIELNKKRE--AEMSKLRRDLEEANIQHESTLANLRKKHNDAVSEMGEQIDQLNKL 103
T+ + L + + + KL + LEEA + L L + ++ Q+D+
Sbjct: 19 NTADEKSLQSRSDEIIALIKLEKLLEEAERKALEALKKLAEATASIRAQNKRQLDRFGLG 78
Query: 104 KTNKEEATTEKVLKQLKHQLNEVQSRLDEANRTI 137
+E L + + + N+ +
Sbjct: 79 DKQRER------LDARLQIDRTFRKQQRDLNKAM 106
Score = 26.3 bits (58), Expect = 6.4
Identities = 26/124 (20%), Positives = 47/124 (37%), Gaps = 5/124 (4%)
Query: 1 MQARIYELEEEVEVERQSRAKA----EKQRADLARELEELGERLEEAGGATSAQIELNKK 56
++ +E+ R A EK + R+ E ++L EA + AQ +
Sbjct: 14 KLKKLNTADEKSLQSRSDEIIALIKLEKLLEEAERKALEALKKLAEATASIRAQNKRQLD 73
Query: 57 REAEMSKLRRDLEEANIQHESTLANLRKKHNDAVSEMGEQIDQLNKLKTNKEEATTEKVL 116
R K R L+ +Q + T ++ N A++ G L K + +A + L
Sbjct: 74 RFGLGDKQRERLDAR-LQIDRTFRKQQRDLNKAMTAKGLAGSDLYKEQLAAIKAALNEAL 132
Query: 117 KQLK 120
+L
Sbjct: 133 AELH 136
>gnl|CDD|111809 pfam02961, BAF, Barrier to autointegration factor. The BAF
protein has a SAM-domain-like bundle of orthogonally
packed alpha-hairpins - one classic and one pseudo
helix-hairpin-helix motif. The protein is involved in
the prevention of retroviral DNA integration.
Length = 89
Score = 26.2 bits (58), Expect = 3.2
Identities = 19/63 (30%), Positives = 25/63 (39%), Gaps = 4/63 (6%)
Query: 23 EKQRADLARELEELGERLEEAGGATS----AQIELNKKREAEMSKLRRDLEEANIQHEST 78
+K LA E LG RLE+ G + Q L KK E + +D AN +
Sbjct: 18 DKPVTALAGIGEVLGGRLEDKGFDKAYVVLGQFLLLKKDEELFKEWLKDTCGANAKQARD 77
Query: 79 LAN 81
N
Sbjct: 78 CYN 80
>gnl|CDD|215960 pfam00509, Hemagglutinin, Haemagglutinin. Hemagglutinin from
influenza virus causes membrane fusion of the viral
membrane with the host membrane. Fusion occurs after the
host cell internalises the virus by endocytosis. The
drop of pH causes release of a hydrophobic fusion
peptide and a large conformational change leading to
membrane fusion.
Length = 550
Score = 27.3 bits (61), Expect = 3.6
Identities = 11/52 (21%), Positives = 26/52 (50%), Gaps = 13/52 (25%)
Query: 95 EQIDQL-NKL-----KTNKEEATTEKVLKQLKHQLNEVQSRLDEANRTINDL 140
+ IDQ+ KL K N + + ++ + +E++ R++ N+ ++D
Sbjct: 371 KAIDQITGKLNSLIEKMNTQ-------FEAIEKEFSELERRINNLNKKVDDG 415
>gnl|CDD|130141 TIGR01069, mutS2, MutS2 family protein. Function of MutS2 is
unknown. It should not be considered a DNA mismatch
repair protein. It is likely a DNA mismatch binding
protein of unknown cellular function [DNA metabolism,
Other].
Length = 771
Score = 27.5 bits (61), Expect = 3.6
Identities = 18/117 (15%), Positives = 40/117 (34%), Gaps = 6/117 (5%)
Query: 17 QSRAKAEKQRADLAREL-----EELGERLEEAGGATSAQIELNKKREAEMSKLRRDLEEA 71
+S A QR + + GE EE L K+ E + L + L+E
Sbjct: 482 ESYAFEIAQRYGIPHFIIEQAKTFYGEFKEEINVLIEKLSALEKELEQKNEHLEKLLKEQ 541
Query: 72 NIQHESTLANLRKKHNDAVSEMGEQIDQLNKLKTNKEEATTEKVLKQLKHQLNEVQS 128
+ L ++ + ++++ + + E ++++LK +
Sbjct: 542 EKLKKE-LEQEMEELKERERNKKLELEKEAQEALKALKKEVESIIRELKEKKIHKAK 597
>gnl|CDD|198091 smart01023, BAF, Barrier to autointegration factor.
Barrier-to-autointegration factor (BAF) is an essential
protein that is highly conserved in metazoan evolution,
and which may act as a DNA-bridging protein. BAF binds
directly to double-stranded DNA, to transcription
activators, and to inner nuclear membrane proteins,
including lamin A filament proteins that anchor
nuclear-pore complexes in place, and nuclear LEM-domain
proteins that bind to laminins filaments and chromatin.
New findings suggest that BAF has structural roles in
nuclear assembly and chromatin organization, represses
gene expression and might interlink chromatin
structure, nuclear architecture and gene regulation in
metazoans. BAF can be exploited by retroviruses to act
as a host component of pre-integration complexes, which
promote the integration of the retroviral DNA into the
host chromosome by preventing autointegration of
retroviral DNA. BAF might contribute to the assembly or
activity of retroviral pre-integration complexes
through direct binding to the retroviral proteins p55
Gag and matrix, as well as to DNA.
Length = 87
Score = 26.2 bits (58), Expect = 3.9
Identities = 20/63 (31%), Positives = 24/63 (38%), Gaps = 4/63 (6%)
Query: 23 EKQRADLARELEELGERLEEAGGATS----AQIELNKKREAEMSKLRRDLEEANIQHEST 78
EK LA E LG RLE G + Q L KK E + +D AN +
Sbjct: 16 EKPVTALAGIGEVLGGRLETKGFDKAYVVLGQFLLLKKDEELFKEWLKDTCGANAKQARD 75
Query: 79 LAN 81
N
Sbjct: 76 CYN 78
>gnl|CDD|227278 COG4942, COG4942, Membrane-bound metallopeptidase [Cell division
and chromosome partitioning].
Length = 420
Score = 27.0 bits (60), Expect = 4.0
Identities = 30/153 (19%), Positives = 58/153 (37%), Gaps = 9/153 (5%)
Query: 1 MQARIYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAE 60
+Q I LE+++ ++ RAK EKQ L E+ LE T+ ++ +K+ A+
Sbjct: 43 IQKEIAALEKKIREQQDQRAKLEKQLKSLETEI----ASLEAQLIETADDLKKLRKQIAD 98
Query: 61 MSKLRRDLEEANIQHESTLANLRKKHNDAVSEMGEQIDQLNKLKTNKEEATTEKVLKQLK 120
++ LE + LA A+ G + + ++ + ++
Sbjct: 99 LNARLNALEVQEREQRRRLAEQL----AALQRSGRNPPPALLV-SPEDAQRSVRLAIYYG 153
Query: 121 HQLNEVQSRLDEANRTINDLDVARKKLIIETTE 153
R+D T+ L R ++ E E
Sbjct: 154 ALNPARAERIDALKATLKQLAAVRAEIAAEQAE 186
>gnl|CDD|233004 TIGR00513, accA, acetyl-CoA carboxylase, carboxyl transferase,
alpha subunit. The enzyme acetyl-CoA carboxylase
contains a biotin carboxyl carrier protein or domain, a
biotin carboxylase, and a carboxyl transferase. This
model represents the alpha chain of the carboxyl
transferase for cases in which the architecture of the
protein is as in E. coli, in which the
carboxyltransferase portion consists of two
non-identical subnits, alpha and beta [Fatty acid and
phospholipid metabolism, Biosynthesis].
Length = 316
Score = 27.1 bits (60), Expect = 4.1
Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
Query: 5 IYELEEEVEVERQSRAKAEKQRADLARELEELGERLEE 42
I ELE ++E RA++ + DL+ E+E L +R E
Sbjct: 12 IAELEAKIE---SLRARSRDEDVDLSEEIERLEKRSVE 46
>gnl|CDD|233067 TIGR00641, acid_CoA_mut_N, methylmalonyl-CoA mutase N-terminal
domain. Methylmalonyl-CoA mutase (EC 5.4.99.2)
catalyzes a reversible isomerization between
L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an
adenosylcobalamin cofactor. It may be a homodimer, as in
mitochondrion, or a heterodimer with partially
homologous beta chain that does not bind the
adenosylcobalamin cofactor, as in Propionibacterium
freudenreichii. The most similar archaeal sequences are
separate chains, such as AF2215 abd AF2219 of
Archaeoglobus fulgidus, that correspond roughly to the
first 500 and last 130 residues, respectively of known
methylmalonyl-CoA mutases. This model describes the
N-terminal domain subfamily. In a neighbor-joining tree,
AF2215 branches with a bacterial isobutyryl-CoA mutase,
which is also the same length. Scoring between the noise
and trusted cutoffs are the non-catalytic, partially
homologous beta chains from certain heterodimeric
examples of 5.4.99.2.
Length = 524
Score = 27.0 bits (60), Expect = 4.2
Identities = 21/106 (19%), Positives = 39/106 (36%), Gaps = 15/106 (14%)
Query: 28 DLARELEELGERLEEAGGATSAQIELNKKREAEMS--KLRRDLEEAN----------IQH 75
D+ + + +EE GG A K E + + + ++ ++
Sbjct: 379 DIYERAWKYIQEIEEMGGMAKAIERGIPKLRIEEAAARTQARIDSGRQVIVGVNKYQLEE 438
Query: 76 ESTLANLRKKHNDAVSEMGEQIDQLNKLKTNKEEATTEKVLKQLKH 121
E + L+ D S EQI +L KL+ +++ E L L
Sbjct: 439 EDEVEVLKV---DNSSVREEQIAKLKKLRAERDQEKVEAALDALTK 481
>gnl|CDD|168351 PRK06023, PRK06023, enoyl-CoA hydratase; Provisional.
Length = 251
Score = 26.7 bits (59), Expect = 4.6
Identities = 18/73 (24%), Positives = 38/73 (52%), Gaps = 11/73 (15%)
Query: 5 IYELEEEVEVERQSRAKAEK------QRADLAREL-----EELGERLEEAGGATSAQIEL 53
I+++ +E VE ++ AE+ Q +AR+L E++ R++E +A+++
Sbjct: 179 IWKIVDEEAVEAETLKAAEELAAKPPQALQIARDLMRGPREDILARIDEEAKHFAARLKS 238
Query: 54 NKKREAEMSKLRR 66
+ R A + +RR
Sbjct: 239 AEARAAFEAFMRR 251
>gnl|CDD|206167 pfam13997, YqjK, YqjK-like protein. The YqjK-like protein family
includes the E. coli YqjK protein, which is
functionally uncharacterized. This family of proteins
is found in bacteria. Proteins in this family are
approximately 100 amino acids in length. There is a
single completely conserved residue R that may be
functionally important.
Length = 73
Score = 25.3 bits (56), Expect = 4.8
Identities = 7/22 (31%), Positives = 10/22 (45%)
Query: 20 AKAEKQRADLARELEELGERLE 41
+ ++QR DLA E E
Sbjct: 3 QRIQQQRLDLAAHAEPWLEATA 24
>gnl|CDD|226654 COG4191, COG4191, Signal transduction histidine kinase regulating
C4-dicarboxylate transport system [Signal transduction
mechanisms].
Length = 603
Score = 26.9 bits (60), Expect = 4.9
Identities = 16/59 (27%), Positives = 29/59 (49%)
Query: 14 VERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRRDLEEAN 72
R A+ ++ RA+L R +EE L A A+I ++ EA + + + +L +A
Sbjct: 321 RARLRLAELQEARAELERRVEERTADLTRANARLQAEIAEREQAEAALRRAQDELVQAG 379
>gnl|CDD|177432 PHA02607, wac, fibritin; Provisional.
Length = 454
Score = 26.9 bits (60), Expect = 5.1
Identities = 12/68 (17%), Positives = 30/68 (44%), Gaps = 13/68 (19%)
Query: 84 KKHNDAVSEMGEQIDQLNKLKTNKEEATTEKVLKQ----------LKHQLNEVQSRLDEA 133
KK D ++E+ +D +N ++ N + V+ Q LK +++ +L
Sbjct: 62 KKTKDKINEV---VDDVNTIQENLDVIGDISVIDQINQNVADIEVLKKDVSDTTDKLAGT 118
Query: 134 NRTINDLD 141
+++++
Sbjct: 119 TNEVDEIE 126
>gnl|CDD|189762 pfam00901, Orbi_VP5, Orbivirus outer capsid protein VP5.
cryoelectron microscopy indicates that VP5 is a trimer
implying that there are 360 copies of VP5 per virion.
Length = 507
Score = 26.9 bits (60), Expect = 5.4
Identities = 29/132 (21%), Positives = 57/132 (43%), Gaps = 21/132 (15%)
Query: 1 MQARIYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAE 60
+Q ++ ELE E + E R K K+ +E+ GE LEE + ++ ++ E +
Sbjct: 89 LQRKLKELEREQKEEEV-REKHNKKI------IEKFGEDLEEVYKFMKGEAKVEEEEEKQ 141
Query: 61 MSKLRRDLEEAN--IQHES-TLANLRK-----------KHNDAVSEMGEQIDQLNKLKTN 106
M L + L+ ++ E+ +L L K + E ++ID L
Sbjct: 142 MEILEKALKSYLKIVKEENKSLQRLAKALQKESEERTQDETKMIEEYRDKIDALKNAIEV 201
Query: 107 KEEATTEKVLKQ 118
++E E+ +++
Sbjct: 202 EKEGLQEEAIQE 213
>gnl|CDD|182106 PRK09841, PRK09841, cryptic autophosphorylating protein tyrosine
kinase Etk; Provisional.
Length = 726
Score = 26.8 bits (59), Expect = 5.4
Identities = 30/116 (25%), Positives = 53/116 (45%), Gaps = 15/116 (12%)
Query: 37 GERLEEAG---------GATSAQIELNKKREAE-MSKLRRDLEEANIQHESTLANLRKKH 86
G+RLE+ G Q L+++ E E ++ L+ + ES + L
Sbjct: 177 GQRLEKDGVALTIADIKAKPGTQFVLSQRTELEAINALQETFTVSERSKESGMLELTMTG 236
Query: 87 NDA--VSEMGEQIDQLNKLKTN--KEEATTEKVLKQLKHQLNEVQSRLDEANRTIN 138
+D ++ + I N L+ N ++ A + L+ L+ QL EV+S LD+A +N
Sbjct: 237 DDPQLITRILNSIAN-NYLQQNIARQAAQDSQSLEFLQRQLPEVRSELDQAEEKLN 291
>gnl|CDD|109884 pfam00846, Hanta_nucleocap, Hantavirus nucleocapsid protein.
Length = 428
Score = 26.8 bits (59), Expect = 5.6
Identities = 22/72 (30%), Positives = 30/72 (41%), Gaps = 4/72 (5%)
Query: 61 MSKLRRDLEEANIQHESTLANLRKKHNDAVSEMGEQIDQLNKLKTNKEEA---TTEKVLK 117
MS L +L+E HE L R+K DA + D +NK A E L
Sbjct: 1 MSNLE-ELQEEITAHEQQLVIARQKLKDAEKAVEVDPDDVNKSTLQSRRAAVSALEAKLA 59
Query: 118 QLKHQLNEVQSR 129
+LK QL + +
Sbjct: 60 ELKRQLADRIAT 71
>gnl|CDD|222878 PHA02562, 46, endonuclease subunit; Provisional.
Length = 562
Score = 26.9 bits (60), Expect = 5.7
Identities = 26/115 (22%), Positives = 50/115 (43%), Gaps = 21/115 (18%)
Query: 52 ELNKKREAEMSKLRRDLEEANIQHESTLANLRKKHNDAVSEMGEQIDQLNKL-------- 103
E K +AE+ +L +L + E A L K N A +++ +I+Q K+
Sbjct: 227 EEAKTIKAEIEELTDELLNLVMDIEDPSAAL-NKLNTAAAKIKSKIEQFQKVIKMYEKGG 285
Query: 104 -----------KTNKEEATTEKVLKQLKHQLNEVQSRLDEANRTINDLDVARKKL 147
++ +K LK+L+H L ++ + +DE +++ + KKL
Sbjct: 286 VCPTCTQQISEGPDRITKIKDK-LKELQHSLEKLDTAIDELEEIMDEFNEQSKKL 339
>gnl|CDD|235600 PRK05771, PRK05771, V-type ATP synthase subunit I; Validated.
Length = 646
Score = 26.8 bits (60), Expect = 5.9
Identities = 27/124 (21%), Positives = 52/124 (41%), Gaps = 17/124 (13%)
Query: 29 LARELEELGERLEEAGGATSAQIE-LNKKREAE-MSKLRRDLEEANIQHESTLANLRKKH 86
L +E+ E L E G IE L ++ E + KLR L + + + L + K
Sbjct: 14 LKSYKDEVLEALHELG---VVHIEDLKEELSNERLRKLRSLLTKLS-EALDKLRSYLPKL 69
Query: 87 NDAVSEMGEQIDQLNKLKTNKEEATTEKVLKQLKHQLNEVQSRLDEANRTINDLDVARKK 146
N E + + E+++K ++ +L +++ + E I++L+ K+
Sbjct: 70 NPLREEKKK-----------VSVKSLEELIKDVEEELEKIEKEIKELEEEISELENEIKE 118
Query: 147 LIIE 150
L E
Sbjct: 119 LEQE 122
>gnl|CDD|204614 pfam11221, Med21, Subunit 21 of Mediator complex. Med21 has been
known as Srb7 in yeasts, hSrb7 in humans and Trap 19 in
Drosophila. The heterodimer of the two subunits Med7 and
Med21 appears to act as a hinge between the middle and
the tail regions of Mediator.
Length = 132
Score = 26.1 bits (58), Expect = 6.4
Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 7/42 (16%)
Query: 2 QARIYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEA 43
RI ELEEE+ E +R + +E E+L +++E
Sbjct: 91 LRRIKELEEELRE-------VEAEREEAVKEKEKLLKKVEAL 125
>gnl|CDD|234173 TIGR03346, chaperone_ClpB, ATP-dependent chaperone ClpB. Members
of this protein family are the bacterial ATP-dependent
chaperone ClpB. This protein belongs to the AAA family,
ATPases associated with various cellular activities
(pfam00004). This molecular chaperone does not act as a
protease, but rather serves to disaggregate misfolded
and aggregated proteins [Protein fate, Protein folding
and stabilization].
Length = 852
Score = 26.5 bits (59), Expect = 6.6
Identities = 23/72 (31%), Positives = 42/72 (58%), Gaps = 4/72 (5%)
Query: 4 RIYELE-EEVEVERQSRAKAEKQRADLARELEELGER---LEEAGGATSAQIELNKKREA 59
RI +LE E ++++ ++++ DL +EL EL E LEE A A I+ ++ +
Sbjct: 413 RIIQLEIEREALKKEKDEASKERLEDLEKELAELEEEYADLEEQWKAEKAAIQGIQQIKE 472
Query: 60 EMSKLRRDLEEA 71
E+ ++R +LE+A
Sbjct: 473 EIEQVRLELEQA 484
>gnl|CDD|218618 pfam05508, Ran-binding, RanGTP-binding protein. The small Ras-like
GTPase Ran plays an essential role in the transport of
macromolecules in and out of the nucleus and has been
implicated in spindle and nuclear envelope formation
during mitosis in higher eukaryotes. The S. cerevisiae
ORF YGL164c encoding a novel RanGTP-binding protein,
termed Yrb30p was identified. The protein competes with
yeast RanBP1 (Yrb1p) for binding to the GTP-bound form
of yeast Ran (Gsp1p) and is, like Yrb1p, able to form
trimeric complexes with RanGTP and some of the
karyopherins.
Length = 302
Score = 26.5 bits (59), Expect = 6.6
Identities = 11/43 (25%), Positives = 23/43 (53%)
Query: 28 DLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRRDLEE 70
L RE++E ERL+EA + ++ + + K+ R +++
Sbjct: 88 SLRREIDEFDERLDEAASSEELSSRTSENEKESIKKIERYMKD 130
>gnl|CDD|216531 pfam01496, V_ATPase_I, V-type ATPase 116kDa subunit family. This
family consists of the 116kDa V-type ATPase (vacuolar
(H+)-ATPases) subunits, as well as V-type ATP synthase
subunit i. The V-type ATPases family are proton pumps
that acidify intracellular compartments in eukaryotic
cells for example yeast central vacuoles,
clathrin-coated and synaptic vesicles. They have
important roles in membrane trafficking processes. The
116kDa subunit (subunit a) in the V-type ATPase is part
of the V0 functional domain responsible for proton
transport. The a subunit is a transmembrane glycoprotein
with multiple putative transmembrane helices it has a
hydrophilic amino terminal and a hydrophobic carboxy
terminal. It has roles in proton transport and assembly
of the V-type ATPase complex. This subunit is encoded by
two homologous gene in yeast VPH1 and STV1.
Length = 707
Score = 26.6 bits (59), Expect = 6.8
Identities = 10/42 (23%), Positives = 19/42 (45%)
Query: 1 MQARIYELEEEVEVERQSRAKAEKQRADLARELEELGERLEE 42
+Y++ E + +K K+ +L R LE+ LE+
Sbjct: 206 FGFELYDVPETEGERSELISKVNKRIEELQRVLEQTESHLEK 247
>gnl|CDD|181619 PRK09039, PRK09039, hypothetical protein; Validated.
Length = 343
Score = 26.5 bits (59), Expect = 6.8
Identities = 19/70 (27%), Positives = 37/70 (52%)
Query: 2 QARIYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEM 61
+ R EL +E++ E+Q A+A Q L +++ L +L A A + +++ +A++
Sbjct: 115 EGRAGELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKI 174
Query: 62 SKLRRDLEEA 71
+ L R L A
Sbjct: 175 ADLGRRLNVA 184
>gnl|CDD|224495 COG1579, COG1579, Zn-ribbon protein, possibly nucleic acid-binding
[General function prediction only].
Length = 239
Score = 26.2 bits (58), Expect = 7.3
Identities = 22/121 (18%), Positives = 48/121 (39%), Gaps = 4/121 (3%)
Query: 27 ADLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRRDLEEANIQHESTLANLRKKH 86
+++L + + KK +AE+ L + LE I+ E L N +
Sbjct: 6 LKSLLAIQKLDLEKDRLEPRIKEIRKALKKAKAELEALNKALEALEIELED-LENQVSQL 64
Query: 87 NDAVSEMGEQIDQLNKLKTNKEEATTEKVLKQLKHQLNEVQSRLDEANRTINDLDVARKK 146
+ E+ E+I + + + E+ L+ L ++ + R++ + +L +K
Sbjct: 65 ESEIQEIRERIKRAEEKLSA---VKDERELRALNIEIQIAKERINSLEDELAELMEEIEK 121
Query: 147 L 147
L
Sbjct: 122 L 122
>gnl|CDD|149105 pfam07851, TMPIT, TMPIT-like protein. A number of members of this
family are annotated as being transmembrane proteins
induced by tumour necrosis factor alpha, but no
literature was found to support this.
Length = 330
Score = 26.2 bits (58), Expect = 7.6
Identities = 18/88 (20%), Positives = 38/88 (43%), Gaps = 13/88 (14%)
Query: 60 EMSKLRRDLEEANIQHESTLANLRKKHNDAVSEMGEQIDQLNKLK----------TNKEE 109
E+ K + L+E + ++ L + K S + Q +L +L T ++
Sbjct: 8 ELEKEFQQLQETHRLYKQKLEEVEKLQEQCTSAIARQRKRLKQLIVSLKKLKKSLTPEDS 67
Query: 110 ATTEKVLKQLKH---QLNEVQSRLDEAN 134
E++ +Q+K Q +++S L + N
Sbjct: 68 ELVEQLEEQIKERKNQFFDMESFLPKKN 95
>gnl|CDD|235580 PRK05724, PRK05724, acetyl-CoA carboxylase carboxyltransferase
subunit alpha; Validated.
Length = 319
Score = 26.3 bits (59), Expect = 7.9
Identities = 17/39 (43%), Positives = 24/39 (61%), Gaps = 3/39 (7%)
Query: 5 IYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEA 43
I ELE ++E + RA AE DL+ E+E L ++LEE
Sbjct: 12 IAELEAKIE---ELRAVAEDSDVDLSEEIERLEKKLEEL 47
>gnl|CDD|227250 COG4913, COG4913, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 1104
Score = 26.5 bits (58), Expect = 8.5
Identities = 24/102 (23%), Positives = 42/102 (41%), Gaps = 12/102 (11%)
Query: 2 QARIYELEEEVEVERQSRAKAE--KQRADLARELEELGERLEEAGGATSAQIELNKKREA 59
AR+ L EE+ + R S AK E +++ EL+++ E L L +
Sbjct: 789 NARLRRLREEI-IGRMSDAKKEDTAALSEVGAELDDIPEYLARLQ-------TLTEDALP 840
Query: 60 EMSKLRRDLEEANIQHESTLANLRKKHNDAVSEMGEQIDQLN 101
E L R E N + + L + + + E+I+ +N
Sbjct: 841 E--FLARFQELLNRSSDDGVTQLLSHLDHERALIEERIEAIN 880
>gnl|CDD|234714 PRK00286, xseA, exodeoxyribonuclease VII large subunit; Reviewed.
Length = 438
Score = 26.3 bits (59), Expect = 8.6
Identities = 27/126 (21%), Positives = 58/126 (46%), Gaps = 10/126 (7%)
Query: 26 RADLARELEELGERLEEAGGATSAQIELNKKREAEMSKLR---RDLEEANIQHESTLANL 82
RA+L + L++L +RL A ++E K++ + R + E Q + L L
Sbjct: 262 RAELLQRLQQLQQRLAR---AMRRRLE-QKRQRLDQLARRLKFQSPERLLAQQQQRLDRL 317
Query: 83 RKKHNDAVSEMGEQIDQ-LNKLKTNKEEATTEKVLKQLKHQLNEVQSRLDEANRTINDLD 141
+++ A+ Q L +L ++ ++ +++ + +L +++ RL A R L
Sbjct: 318 QQRLQRALERRLRLAKQRLERLSQRLQQQNPQRRIERAQQRLEQLEQRLRRAMRRQ--LK 375
Query: 142 VARKKL 147
R++L
Sbjct: 376 RKRQRL 381
>gnl|CDD|163506 TIGR03794, NHLM_micro_HlyD, NHLM bacteriocin system secretion
protein. Members of this protein family are homologs of
the HlyD membrane fusion protein of type I secretion
systems. Their occurrence in prokaryotic genomes is
associated with the occurrence of a novel class of
microcin (small bacteriocins) with a leader peptide
region related to nitrile hydratase. We designate the
class of bacteriocin as Nitrile Hydratase Leader
Microcin, or NHLM. This family, therefore, is designated
as NHLM bacteriocin system secretion protein. Some but
not all NHLM-class putative microcins belong to the TOMM
(thiazole/oxazole modified microcin) class as assessed
by the presence of the scaffolding protein and/or
cyclodehydratase in the same gene clusters [Transport
and binding proteins, Amino acids, peptides and amines,
Cellular processes, Biosynthesis of natural products].
Length = 421
Score = 26.3 bits (58), Expect = 8.8
Identities = 28/139 (20%), Positives = 52/139 (37%), Gaps = 21/139 (15%)
Query: 2 QARIYELEEEVEVER--QSRAKAEKQRADLARE--LEELGERLEEAGGATSA----QIEL 53
++ +L+E++E R R K ++R + LEE RL E A S Q L
Sbjct: 102 YQKLTQLQEQLEEVRNYTGRLKEGRERHFQKSKEALEETIGRLREELAALSREVGKQRGL 161
Query: 54 NKKREAEMSKLRRDLEEANIQHESTLANLRKKHNDAVSEMGEQIDQLNKLKTNKEEATTE 113
+ A + R ++ + E A + + + L+T +E E
Sbjct: 162 LSRGLATFKRDRILQQQWREEQEKYDAADKAR-------------AIYALQTKADERNLE 208
Query: 114 KVLKQLKHQLNEVQSRLDE 132
VL+ L ++ ++
Sbjct: 209 TVLQSLSQADFQLAGVAEK 227
>gnl|CDD|150256 pfam09520, RE_MjaII, MjaII restriction endonuclease. This family
includes the MjaII (recognises GGNCC but the cleavage
site is unknown) restriction endonuclease.
Length = 252
Score = 25.8 bits (57), Expect = 9.1
Identities = 25/112 (22%), Positives = 43/112 (38%), Gaps = 11/112 (9%)
Query: 3 ARIYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEMS 62
ARI L ERQ + + +A +A+ ++E+ + L + K E E
Sbjct: 75 ARIIALGHHAVAERQYDKQGKIDQAAIAK-IDEIIDDL------RKGENLPKKPSENEEL 127
Query: 63 KLRRDLEEANIQHESTLANLRKKHNDAVSEMGEQIDQLNKLKTNKEEATTEK 114
+ + E I + +A+L + D E + K NK + T K
Sbjct: 128 REAQSKGEERIVEITVVADLYVQRKDGRELYFE----IKSPKPNKGQCLTVK 175
>gnl|CDD|188306 TIGR03319, RNase_Y, ribonuclease Y. Members of this family are
RNase Y, an endoribonuclease. The member from Bacillus
subtilis, YmdA, has been shown to be involved in
turnover of yitJ riboswitch [Transcription, Degradation
of RNA].
Length = 514
Score = 26.0 bits (58), Expect = 9.4
Identities = 25/118 (21%), Positives = 48/118 (40%), Gaps = 7/118 (5%)
Query: 22 AEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRRDLEEANIQHESTLAN 81
AEK+ + + E ++ + L K E KLR +LE + + L
Sbjct: 23 AEKKLGSAEELAKRIIEEAKKEAETLKKEALLEAKEEVH--KLRAELERELKERRNELQR 80
Query: 82 LRKKHNDAVSEMGEQIDQLNKLKTNKEEATTEKVLKQLKHQLNEVQSRLDEANRTIND 139
L ++ + + E +D+ + KEE EK K+L ++ + + +E I +
Sbjct: 81 LERR----LLQREETLDRKMESLDKKEE-NLEKKEKELSNKEKNLDEKEEELEELIAE 133
>gnl|CDD|235582 PRK05729, valS, valyl-tRNA synthetase; Reviewed.
Length = 874
Score = 26.2 bits (59), Expect = 9.7
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 9 EEEVEVERQSRAKAEKQRADLARELEELGE 38
EE VE ER+ A+ E++ A L L L
Sbjct: 845 EEVVEKEREKLAEYEEKLAKLKERLARLKA 874
>gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated
ATPase domains [General function prediction only].
Length = 530
Score = 26.1 bits (58), Expect = 9.9
Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 5/64 (7%)
Query: 8 LEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRRD 67
LE++ E RQ A EKQ+ +LA+E E + G A +++ + K R + KL
Sbjct: 239 LEQKAERLRQEAAAYEKQQKELAKEQEWI-----RRGKAAASKAKKAKSRIKRLEKLEAR 293
Query: 68 LEEA 71
L E
Sbjct: 294 LAEE 297
>gnl|CDD|224397 COG1480, COG1480, Predicted membrane-associated HD superfamily
hydrolase [General function prediction only].
Length = 700
Score = 26.2 bits (58), Expect = 9.9
Identities = 19/131 (14%), Positives = 49/131 (37%), Gaps = 20/131 (15%)
Query: 13 EVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRRDLEEAN 72
+E + + E++ A + + + T ++L + +++++R LEE
Sbjct: 61 SIEDEKATEEERKAA-----SDSVEPVYKRDAEITQNIVQLYQNFFDAINEVKRSLEENE 115
Query: 73 IQHESTLANLRKKHNDAVSEMGEQIDQLNKLKTNKEEATTEKVLKQLK---HQLNEVQSR 129
++ + + +Q+ TN + + E++L L+ LN Q
Sbjct: 116 -----------DENTEYSLKQVKQLKDRLLRDTNTVDISEERILTLLELDSEDLNLTQDT 164
Query: 130 L-DEANRTIND 139
+ E + +
Sbjct: 165 IITEVENAMGN 175
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.304 0.122 0.299
Gapped
Lambda K H
0.267 0.0677 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 7,583,687
Number of extensions: 714931
Number of successful extensions: 2825
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2215
Number of HSP's successfully gapped: 848
Length of query: 153
Length of database: 10,937,602
Length adjustment: 89
Effective length of query: 64
Effective length of database: 6,990,096
Effective search space: 447366144
Effective search space used: 447366144
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)
S2: 55 (25.1 bits)