RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6538
(153 letters)
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment
2, heavy meromyosin, essential light chain, motor
protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1
PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 66.4 bits (162), Expect = 9e-14
Identities = 23/62 (37%), Positives = 37/62 (59%)
Query: 1 MQARIYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAE 60
+++ I +L+E++E E+ +R KAEKQ+ DL+ ELE L LE+ T+ Q EL +
Sbjct: 1121 LESHISDLQEDLESEKAARNKAEKQKRDLSEELEALKTELEDTLDTTATQQELRGSDYKD 1180
Query: 61 MS 62
Sbjct: 1181 DD 1182
Score = 60.6 bits (147), Expect = 9e-12
Identities = 34/153 (22%), Positives = 63/153 (41%), Gaps = 6/153 (3%)
Query: 1 MQARIYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAE 60
++ I ELE ++ E +SR + EK + L E +L E++ E + K+E E
Sbjct: 1037 HESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEE 1096
Query: 61 MSKLRRDLEEANIQHESTLANLRKKHNDAVSEMGEQIDQLNKLKTNKEEATTEKVLKQLK 120
+ LE+ S N KK + S + + + L K + +A EK + L
Sbjct: 1097 LQAALARLED----ETSQKNNALKKIRELESHISDLQEDLESEKAARNKA--EKQKRDLS 1150
Query: 121 HQLNEVQSRLDEANRTINDLDVARKKLIIETTE 153
+L +++ L++ T R + +
Sbjct: 1151 EELEALKTELEDTLDTTATQQELRGSDYKDDDD 1183
Score = 56.4 bits (136), Expect = 3e-10
Identities = 28/147 (19%), Positives = 61/147 (41%), Gaps = 6/147 (4%)
Query: 1 MQARIYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAE 60
+Q ++ E + R + ++ +L L E+ R+EE + KK + +
Sbjct: 897 LQEKLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQ 956
Query: 61 MSKLRRDLEEANIQHESTLANLRKKHNDAVSEMGEQIDQLNKLKTNKEEATTEKVLKQLK 120
M L LEE E+ L+ + A ++ + D + ++ + T E+ K L+
Sbjct: 957 MLDLEEQLEEE----EAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKER--KLLE 1010
Query: 121 HQLNEVQSRLDEANRTINDLDVARKKL 147
+++++ + L E +L + K
Sbjct: 1011 ERVSDLTTNLAEEEEKAKNLTKLKNKH 1037
Score = 55.2 bits (133), Expect = 8e-10
Identities = 30/153 (19%), Positives = 69/153 (45%), Gaps = 6/153 (3%)
Query: 1 MQARIYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAE 60
MQ ++ +LEE++E E +R K + ++ +++++ + + + + K E
Sbjct: 953 MQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEER 1012
Query: 61 MSKLRRDLEEANIQHESTLANLRKKHNDAVSEMGEQIDQLNKLKTNKEEATTEKVLKQLK 120
+S L +L E + L L+ KH +SE+ ++ + K + EK+ ++L+
Sbjct: 1013 VSDLTTNLAEEE-EKAKNLTKLKNKHESMISELEVRLKKEEKSR-----QELEKIKRKLE 1066
Query: 121 HQLNEVQSRLDEANRTINDLDVARKKLIIETTE 153
+ +++ ++ E I +L K E
Sbjct: 1067 GESSDLHEQIAELQAQIAELKAQLAKKEEELQA 1099
Score = 52.5 bits (126), Expect = 6e-09
Identities = 26/156 (16%), Positives = 69/156 (44%), Gaps = 5/156 (3%)
Query: 1 MQARIYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAE 60
++ ++E+E +E E + + + ++ + +++ +L E+LEE A + +
Sbjct: 925 LEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGK 984
Query: 61 MSKLRRDL---EEANIQHESTLANLRKKHNDAVSEMGEQIDQLNKLKTNKEEATTEKVLK 117
+ K+ D+ E+ N + L ++ +D + + E+ ++ L K + E ++
Sbjct: 985 IKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNL--TKLKNKHESMIS 1042
Query: 118 QLKHQLNEVQSRLDEANRTINDLDVARKKLIIETTE 153
+L+ +L + + E + L+ L + E
Sbjct: 1043 ELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAE 1078
Score = 44.4 bits (105), Expect = 4e-06
Identities = 29/161 (18%), Positives = 63/161 (39%), Gaps = 15/161 (9%)
Query: 2 QARIYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEM 61
+I ++E+++ + K K+R L + +L L E +L K E+ +
Sbjct: 982 DGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMI 1041
Query: 62 S----------KLRRDLEEANIQHESTLANLRKKHNDAVSEMGEQIDQLNKLKTNKEEAT 111
S K R++LE+ + E ++L ++ + +++ E QL K + + A
Sbjct: 1042 SELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAAL 1101
Query: 112 TE-----KVLKQLKHQLNEVQSRLDEANRTINDLDVARKKL 147
++ E++S + + + AR K
Sbjct: 1102 ARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARNKA 1142
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 57.0 bits (138), Expect = 2e-10
Identities = 23/145 (15%), Positives = 58/145 (40%), Gaps = 10/145 (6%)
Query: 1 MQARIYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAE 60
+Q +I E +E + + E + +L ERL + + E
Sbjct: 933 LQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEE 992
Query: 61 MSKLR----------RDLEEANIQHESTLANLRKKHNDAVSEMGEQIDQLNKLKTNKEEA 110
++KLR + +EE +++ L + + + + + ++LN+ ++ +
Sbjct: 993 IAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQAKE 1052
Query: 111 TTEKVLKQLKHQLNEVQSRLDEANR 135
TE + K+L + +++ L++
Sbjct: 1053 ITETMEKKLVEETKQLELDLNDERL 1077
Score = 50.1 bits (120), Expect = 4e-08
Identities = 28/155 (18%), Positives = 60/155 (38%), Gaps = 11/155 (7%)
Query: 7 ELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRR 66
VE ++ E + L R+++E + + L E KLR
Sbjct: 911 IEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKS---LLEKMNNLEITYSTETEKLRS 967
Query: 67 DLEEANIQHE--STLANLRKKHNDAVSEMGEQIDQLNKLK------TNKEEATTEKVLKQ 118
D+E + E N + ++++ +++ Q K +K + TE+++ +
Sbjct: 968 DVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSE 1027
Query: 119 LKHQLNEVQSRLDEANRTINDLDVARKKLIIETTE 153
LK Q +++ +E NR I+D + + +
Sbjct: 1028 LKEQNTLLKTEKEELNRRIHDQAKEITETMEKKLV 1062
Score = 49.0 bits (117), Expect = 1e-07
Identities = 17/149 (11%), Positives = 52/149 (34%), Gaps = 5/149 (3%)
Query: 2 QARIYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEM 61
Q + V R +A Q + ++L+ + +L+ E ++
Sbjct: 871 QKHVRGWLARVHYHRTLKAIVYLQCCYRRMMAKRELKKLKIEARSVERYKKLHIGLENKI 930
Query: 62 SKLRR---DLEEANIQHESTLANLRKKHNDAVSEMGEQIDQLNKLKTNKEEATTEKVLKQ 118
+L+R + + + NL ++ ++ +++L + +E +
Sbjct: 931 MQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSE--EEAKNATNRVLS 988
Query: 119 LKHQLNEVQSRLDEANRTINDLDVARKKL 147
L+ ++ +++ L + ++ K
Sbjct: 989 LQEEIAKLRKELHQTQTEKKTIEEWADKY 1017
Score = 45.9 bits (109), Expect = 1e-06
Identities = 21/147 (14%), Positives = 54/147 (36%), Gaps = 6/147 (4%)
Query: 2 QARIYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEM 61
+ LE ++ ++ + K+ L ++ L + +E + E E
Sbjct: 920 KKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEE- 978
Query: 62 SKLRRDLEEANIQHESTLANLRKKHNDAVSEMGEQIDQLNKLKTNKEE--ATTEKVLKQL 119
++ + + +A LRK+ + +E + +K K E+ + ++ L
Sbjct: 979 ---AKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLL 1035
Query: 120 KHQLNEVQSRLDEANRTINDLDVARKK 146
K + E+ R+ + + I + +
Sbjct: 1036 KTEKEELNRRIHDQAKEITETMEKKLV 1062
Score = 38.6 bits (90), Expect = 4e-04
Identities = 31/147 (21%), Positives = 55/147 (37%), Gaps = 12/147 (8%)
Query: 1 MQARIYELEEEVEVERQSRAKAEKQRADLARELEELGERLE----EAGGATSAQIELNKK 56
++A +Y + + K K A ++L LE + Q + K
Sbjct: 887 LKAIVYLQCCYRRMMAKRELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKS 946
Query: 57 REAEMSKLRRDLEEANIQHESTLANLRKKHNDA------VSEMGEQIDQLNKL--KTNKE 108
+M+ L + S + LR +A V + E+I +L K +T E
Sbjct: 947 LLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTE 1006
Query: 109 EATTEKVLKQLKHQLNEVQSRLDEANR 135
+ T E+ + KH+ ++ S L E N
Sbjct: 1007 KKTIEEWADKYKHETEQLVSELKEQNT 1033
Score = 33.9 bits (78), Expect = 0.017
Identities = 14/85 (16%), Positives = 35/85 (41%), Gaps = 9/85 (10%)
Query: 1 MQARIYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIE-------- 52
++ +++ + E + + K + + L EL+E L+ + +I
Sbjct: 996 LRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQAKEITE 1055
Query: 53 -LNKKREAEMSKLRRDLEEANIQHE 76
+ KK E +L DL + ++++
Sbjct: 1056 TMEKKLVEETKQLELDLNDERLRYQ 1080
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 44.5 bits (104), Expect = 5e-06
Identities = 34/166 (20%), Positives = 63/166 (37%), Gaps = 26/166 (15%)
Query: 2 QARIYE--LEEEVEVERQ---SRAKAE-KQRADLARELEELGERLEEAGGATSAQI--EL 53
Q + + +EE + + + S K E +Q + + R E +RL Q+ +
Sbjct: 75 QEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLY-----NDNQVFAKY 129
Query: 54 NKKREAEMSKLRRDLEEAN-----IQH------ESTLANLRKKHNDAVSEMGEQIDQLNK 102
N R KLR+ L E + ++ +A +M +I LN
Sbjct: 130 NVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNL 189
Query: 103 LKTNKEEATTEKVLKQLKHQLN-EVQSRLDEANRTINDLDVARKKL 147
N E E L++L +Q++ SR D ++ + + +L
Sbjct: 190 KNCNSPETVLEM-LQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAEL 234
Score = 37.9 bits (87), Expect = 7e-04
Identities = 25/156 (16%), Positives = 47/156 (30%), Gaps = 38/156 (24%)
Query: 5 IYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEMSKL 64
I V + + EKQ + + + +EL K E E +
Sbjct: 400 IKSDVMVVVNKLHKYSLVEKQPKESTISIPSI-------------YLELKVKLENEYALH 446
Query: 65 RRDLEEANIQHESTLANLRKKHND-----------AVSEMGEQIDQLNKLKTNKEEATTE 113
R ++ NI +L + D E E++ + +
Sbjct: 447 RSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLD------F 500
Query: 114 KVLKQ-LKHQ---LNEVQSRLDEANRTINDLDVARK 145
+ L+Q ++H N S L+ T+ L +
Sbjct: 501 RFLEQKIRHDSTAWNASGSILN----TLQQLKFYKP 532
Score = 31.4 bits (70), Expect = 0.13
Identities = 13/75 (17%), Positives = 31/75 (41%), Gaps = 12/75 (16%)
Query: 82 LRKKHNDAVSEMGEQIDQLN------KLKTNKEEATTEKVLKQLKHQLNEVQSRLDEANR 135
L K + V + E++ ++N +KT + + + + E + RL N+
Sbjct: 71 LLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRM------YIEQRDRLYNDNQ 124
Query: 136 TINDLDVARKKLIIE 150
+V+R + ++
Sbjct: 125 VFAKYNVSRLQPYLK 139
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor,
microtubles, motor protein; HET: ADP SPM; 2.81A
{Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C*
Length = 3245
Score = 38.7 bits (90), Expect = 3e-04
Identities = 23/156 (14%), Positives = 56/156 (35%), Gaps = 36/156 (23%)
Query: 20 AKAEKQRADLARELEELGERLEEAGGATSAQIE--LNKKREAEMSKL------------- 64
E Q DL L + L+ + +++ + ++ AE+ +
Sbjct: 1930 RDTEAQVKDLQVSLAQKNRELDVKNEQANQKLKQMVQDQQAAEIKQKDARELQVQLDVRN 1989
Query: 65 ----------RRDLEEANIQH---------ESTLANLRKKHNDAVSEMGEQIDQLNKLKT 105
DLE+A E+ L+ K ++ V+ + + K
Sbjct: 1990 KEIAVQKVKAYADLEKAEPTGPLREEVEQLENAANELKLKQDEIVATITALEKSIATYKE 2049
Query: 106 NKEEATTEKVLKQLKHQLNEVQSRLDEANRTINDLD 141
E +Q+K + ++V++++D + +++L+
Sbjct: 2050 EYATLIRET--EQIKTESSKVKNKVDRSIALLDNLN 2083
Score = 26.4 bits (58), Expect = 4.6
Identities = 5/33 (15%), Positives = 14/33 (42%)
Query: 114 KVLKQLKHQLNEVQSRLDEANRTINDLDVARKK 146
L+ LK + E+ +++E + ++
Sbjct: 2368 STLETLKKETTEIALKVEETETVMQEISEVSAL 2400
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A
{Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Length = 995
Score = 38.1 bits (89), Expect = 5e-04
Identities = 8/88 (9%), Positives = 33/88 (37%), Gaps = 2/88 (2%)
Query: 1 MQARIYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAE 60
I ++ +++ + + +L + +L E + EL ++++
Sbjct: 906 TGDSITAVQAKLKNLEAFDGECQSLEGQSNSDLLSILAQLTEL--NYNGVPELTERKDTF 963
Query: 61 MSKLRRDLEEANIQHESTLANLRKKHND 88
++ ++ + +++TL ++
Sbjct: 964 FAQQWTGVKSSAETYKNTLLAELERLQK 991
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome
segregation, cell adhesion, kleisin, MIT cell cycle;
HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP:
c.37.1.12
Length = 430
Score = 35.8 bits (83), Expect = 0.003
Identities = 15/147 (10%), Positives = 54/147 (36%), Gaps = 5/147 (3%)
Query: 5 IYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEMSKL 64
E + +++ Q ++E++ + ++ + + + E +L
Sbjct: 131 YSIFLENENILIKAKNFLVFQG-----DVEQIAAQSPVELSRMFEEVSGSIQYKKEYEEL 185
Query: 65 RRDLEEANIQHESTLANLRKKHNDAVSEMGEQIDQLNKLKTNKEEATTEKVLKQLKHQLN 124
+ +E+ + ++ N R+ H + + ++ L + E + + ++
Sbjct: 186 KEKIEKLSKSATESIKNRRRIHGELKTYKSPGLEVLFQGPRGSRYDEAEGRFEVINNETE 245
Query: 125 EVQSRLDEANRTINDLDVARKKLIIET 151
++++ + + RK+L +T
Sbjct: 246 QLKAEEKKILNQFLKIKKKRKELFEKT 272
Score = 33.5 bits (77), Expect = 0.017
Identities = 14/90 (15%), Positives = 33/90 (36%), Gaps = 2/90 (2%)
Query: 1 MQARIYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELN--KKRE 58
+ EL+E++E +S ++ K R + EL+ E + + R
Sbjct: 178 YKKEYEELKEKIEKLSKSATESIKNRRRIHGELKTYKSPGLEVLFQGPRGSRYDEAEGRF 237
Query: 59 AEMSKLRRDLEEANIQHESTLANLRKKHND 88
++ L+ + + ++KK +
Sbjct: 238 EVINNETEQLKAEEKKILNQFLKIKKKRKE 267
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 35.8 bits (82), Expect = 0.004
Identities = 25/141 (17%), Positives = 43/141 (30%), Gaps = 43/141 (30%)
Query: 3 ARIYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREA--- 59
A + +E VEV R ++ R +E G + I +N R A
Sbjct: 1774 ADVMSIESLVEVVFY-RGMT----------MQVAVPR-DELGRSNYGMIAINPGRVAASF 1821
Query: 60 EMSKLRRDLEEANIQHESTL--ANLRKKHN------------DAVSEMGEQIDQLNKLKT 105
L+ +E + + N +N A+ + LN +K
Sbjct: 1822 SQEALQYVVERVGKRTGWLVEIVN----YNVENQQYVAAGDLRALDTVTN---VLNFIKL 1874
Query: 106 NK-------EEATTEKVLKQL 119
K + + E+V L
Sbjct: 1875 QKIDIIELQKSLSLEEVEGHL 1895
>3iyk_A VP5; icosahedral virus; HET: MNA; 7.00A {Bluetongue virus}
Length = 526
Score = 35.7 bits (82), Expect = 0.004
Identities = 26/139 (18%), Positives = 54/139 (38%), Gaps = 7/139 (5%)
Query: 1 MQARIYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAE 60
+QA++ ELE+E E +K + +ELEE+ + A +
Sbjct: 95 IQAKLKELEDEQRNELVRLKYNDKIKEKFGKELEEVYNFMNGEANAEIEDEKQFDILNKA 154
Query: 61 MSKLRRDLEEANIQHESTLANLRKKHNDA-------VSEMGEQIDQLNKLKTNKEEATTE 113
++ + L E ++Q L+K+ + V E ++ID L + + E
Sbjct: 155 VTSYNKILTEEDLQMRRLATALQKEIGERTHAETVMVKEYRDKIDALKNAIEVERDGMQE 214
Query: 114 KVLKQLKHQLNEVQSRLDE 132
+ ++++ +V E
Sbjct: 215 EAIQEIAGMTADVLEAASE 233
>1req_A Methylmalonyl-COA mutase; isomerase, intramolecular transferase;
HET: B12 DCA; 2.00A {Propionibacterium freudenreichii
subspshermanii} SCOP: c.1.19.1 c.23.6.1 PDB: 2req_A*
3req_A* 4req_A* 6req_A* 7req_A* 5req_A* 1e1c_A*
Length = 727
Score = 30.4 bits (69), Expect = 0.19
Identities = 29/125 (23%), Positives = 46/125 (36%), Gaps = 17/125 (13%)
Query: 23 EKQRADLARELEELGERLEEAGGATSAQIELNK-KREAEMSKLRR----DLEEANI---- 73
E+ DLAR+ + +E+ GG A IE K E + R D +
Sbjct: 409 EELTWDLARKAWGHIQEVEKVGGMAKA-IEKGIPKMRIEEAAARTQARIDSGRQPLIGVN 467
Query: 74 ----QHESTLANLRKKHNDAVSEMGEQIDQLNKLKTNKEEATTEKVLKQLKHQLNEVQSR 129
+HE L L K N V EQ +L KL+ ++ + L ++ +
Sbjct: 468 KYRLEHEPPLDVL-KVDNSTVLA--EQKAKLVKLRAERDPEKVKAALDKITWAAGNPDDK 524
Query: 130 LDEAN 134
+ N
Sbjct: 525 DPDRN 529
>2xij_A Methylmalonyl-COA mutase, mitochondrial; isomerase, organic
aciduria, vitamin B12; HET: B12 5AD BTB; 1.95A {Homo
sapiens} PDB: 2xiq_A* 3bic_A
Length = 762
Score = 29.7 bits (67), Expect = 0.38
Identities = 27/111 (24%), Positives = 44/111 (39%), Gaps = 17/111 (15%)
Query: 23 EKQRADLARELEELGERLEEAGGATSAQIELNK-KREAEMSKLRR----DLEEANI---- 73
E D+ +L +EE GG A + K E RR D I
Sbjct: 422 ECLTNDVYDAALKLINEIEEMGGMAKA-VAEGIPKLRIEECAARRQARIDSGSEVIVGVN 480
Query: 74 ----QHESTLANLRKKHNDAVSEMGEQIDQLNKLKTNKEEATTEKVLKQLK 120
+ E T+ + N +V QI++L K+K+++++A E+ L L
Sbjct: 481 KYQLEKEDTV-EVLAIDNTSVRN--RQIEKLKKIKSSRDQALAERCLAALT 528
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos
taurus} SCOP: i.9.1.1
Length = 390
Score = 29.4 bits (65), Expect = 0.38
Identities = 17/100 (17%), Positives = 40/100 (40%), Gaps = 8/100 (8%)
Query: 23 EKQRADLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRRDLEEANIQHES---TL 79
++ D + +L + L + N + + +R D +AN +
Sbjct: 59 DEVDQDFTSRINKLRDSLFNYQ---KNSKDSNTLTKNIVELMRGDFAKANNNDNTFKQIN 115
Query: 80 ANLRKKHNDAVSEMGEQIDQLNKLKTNKEEATTEKVLKQL 119
+LR + ++ EQ+ ++N L+ N + + +K+L
Sbjct: 116 EDLRSRIEILRRKVIEQVQRINLLQKNVRDQLVD--MKRL 153
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.8 bits (63), Expect = 0.55
Identities = 7/28 (25%), Positives = 11/28 (39%), Gaps = 10/28 (35%)
Query: 120 KHQLNEVQSRL-----DEA-----NRTI 137
K L ++Q+ L D A T+
Sbjct: 19 KQALKKLQASLKLYADDSAPALAIKATM 46
>3pm9_A Putative oxidoreductase; putative D-2-hydroxyglutarate
dehydrogenase, putative D-LACT dehydrogenase; HET: FAD;
2.57A {Rhodopseudomonas palustris}
Length = 476
Score = 29.1 bits (66), Expect = 0.61
Identities = 20/81 (24%), Positives = 33/81 (40%), Gaps = 9/81 (11%)
Query: 26 RADLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRRDLEEANIQHESTLANLRKK 85
R D LE + ER E G A I + +++ KLR ++ A + E
Sbjct: 299 RDDARAALESILERGFEDGIVVDAAIANSVQQQQAFWKLREEISPA-QKPEGGSIK---- 353
Query: 86 HNDA---VSEMGEQIDQLNKL 103
+D V+ + + I+Q N
Sbjct: 354 -HDISVPVAAVPQFIEQANAA 373
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 27.8 bits (61), Expect = 1.3
Identities = 21/96 (21%), Positives = 35/96 (36%), Gaps = 20/96 (20%)
Query: 3 ARIYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEMS 62
A+ L +E E R+ R E+QR L+EL + +
Sbjct: 75 AQADRLTQEPESIRKWR---EEQRK----RLQELDAASK-------------VMEQEWRE 114
Query: 63 KLRRDLEEANIQHESTLANLRKKHNDAVSEMGEQID 98
K ++DLEE N + + + + A +Q D
Sbjct: 115 KAKKDLEEWNQRQSEQVEKNKINNRIADKAFYQQPD 150
Score = 26.7 bits (58), Expect = 3.1
Identities = 12/67 (17%), Positives = 23/67 (34%), Gaps = 11/67 (16%)
Query: 2 QARIYELEEEVEVERQS-RAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAE 60
+ R+ EL+ +V Q R KA+K + + E E+ N+ +
Sbjct: 95 RKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEK----------NKINNRIADKA 144
Query: 61 MSKLRRD 67
+
Sbjct: 145 FYQQPDA 151
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold,
coiled coil, riken structural genomics/proteomics
initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus}
SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A*
1iyw_A
Length = 862
Score = 27.9 bits (63), Expect = 1.4
Identities = 7/29 (24%), Positives = 13/29 (44%)
Query: 9 EEEVEVERQSRAKAEKQRADLARELEELG 37
+E VE E + +Q + L ++G
Sbjct: 834 KEVVEAEEARLKENLEQAERIREALSQIG 862
Score = 25.6 bits (57), Expect = 8.0
Identities = 17/67 (25%), Positives = 27/67 (40%), Gaps = 4/67 (5%)
Query: 8 LEEEVEVERQSRAKAEKQRADLARELEELGERLEEAG---GATSAQIELNKKREAEMSKL 64
LE ++VE R + EK+ +L E +L G A +E + R E +
Sbjct: 792 LEGLLDVEEW-RRRQEKRLKELLALAERSQRKLASPGFREKAPKEVVEAEEARLKENLEQ 850
Query: 65 RRDLEEA 71
+ EA
Sbjct: 851 AERIREA 857
>2f9y_A Acetyl-COA carboxylase, carboxyltransferase alpha; zinc ribbon,
crotonase superfamily, spiral domain, ligase; 3.20A
{Escherichia coli} SCOP: c.14.1.4
Length = 339
Score = 27.3 bits (61), Expect = 1.9
Identities = 10/38 (26%), Positives = 18/38 (47%)
Query: 5 IYELEEEVEVERQSRAKAEKQRADLARELEELGERLEE 42
I ELE +++ + EK ++ E+ L E+ E
Sbjct: 32 IAELEAKIDSLTAGSRQDEKLDINIDEEVHRLREKSVE 69
>1omh_A TRWC protein; protein-DNA complex, bacterial conjugation, relaxase,
DNA replication, transferase/DNA complex; HET: DNA;
1.95A {Escherichia coli} SCOP: d.89.1.5 PDB: 1osb_A*
1qx0_A* 1s6m_A* 1zm5_A* 2cdm_A
Length = 293
Score = 27.0 bits (59), Expect = 3.0
Identities = 12/63 (19%), Positives = 24/63 (38%)
Query: 16 RQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRRDLEEANIQH 75
+ +R A+LA EL++LG +L +++++ SK + E
Sbjct: 187 KATRYLGAVYNAELAHELQKLGYQLRYGKDGNFDLAHIDRQQIEGFSKRTEQIAEWYAAR 246
Query: 76 EST 78
Sbjct: 247 GLD 249
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A
{Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20
c.37.1.20
Length = 854
Score = 26.7 bits (60), Expect = 3.6
Identities = 11/74 (14%), Positives = 35/74 (47%), Gaps = 5/74 (6%)
Query: 4 RIYELE-EEVEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEMS 62
+ +LE E ++++ ++++ + E+ +L E + + A+ E ++ ++
Sbjct: 409 KKLQLEIEREALKKEKDPDSQERLKAIEAEIAKLTEEIAK----LRAEWEREREILRKLR 464
Query: 63 KLRRDLEEANIQHE 76
+ + L+E + E
Sbjct: 465 EAQHRLDEVRREIE 478
>3d00_A Tungsten formylmethanofuran dehydrogenase subunit; FWDE/GAPDH
domain-like fold, structural genomics, joint CENT
structural genomics; HET: MSE; 1.90A {Syntrophus
aciditrophicus}
Length = 191
Score = 26.5 bits (58), Expect = 3.7
Identities = 9/41 (21%), Positives = 20/41 (48%)
Query: 4 RIYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAG 44
R++ E++ ++ R K + ++ E L + + EAG
Sbjct: 99 RVFLDVEKMGPWQEIRNWFLKLKTKKEQDSERLFKEIREAG 139
>2obp_A Putative DNA-binding protein; structural genomics, joint center
for structural genomics, J protein structure
initiative, PSI-2; HET: MSE; 1.70A {Ralstonia eutropha}
SCOP: a.4.5.71
Length = 96
Score = 25.8 bits (56), Expect = 3.9
Identities = 12/36 (33%), Positives = 17/36 (47%)
Query: 33 LEELGERLEEAGGATSAQIELNKKREAEMSKLRRDL 68
L L E E G + ++ K+ + MS LRR L
Sbjct: 22 LLVLREAGIENGATPWSLPKIAKRAQLPMSVLRRVL 57
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain
cytoplasmic; motor protein, AAA+ protein, ASCE protein,
P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma
japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Length = 2695
Score = 26.7 bits (59), Expect = 4.0
Identities = 6/31 (19%), Positives = 11/31 (35%)
Query: 114 KVLKQLKHQLNEVQSRLDEANRTINDLDVAR 144
L LK + ++ +L E+ D
Sbjct: 2188 VTLNNLKKEAMNIEKKLSESEEFFPQFDNLV 2218
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor
homology domain, karyog mitosis, microtubules; HET: ADP
EBC; 2.30A {Saccharomyces cerevisiae}
Length = 403
Score = 26.5 bits (59), Expect = 4.1
Identities = 9/41 (21%), Positives = 22/41 (53%)
Query: 3 ARIYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEA 43
++I L+E++ ++ A +++ D ++EL E L +
Sbjct: 3 SKIAALKEKIAALKEKIAALKEKIKDTELGMKELNEILIKE 43
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin
binding, masking, regulation, SELF-inhibition, cell A
membrane protein; 2.10A {Spodoptera frugiperda} PDB:
2i1k_A 1e5w_A
Length = 575
Score = 26.4 bits (57), Expect = 4.3
Identities = 21/160 (13%), Positives = 51/160 (31%), Gaps = 20/160 (12%)
Query: 1 MQARIYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAE 60
++ R EL+ ++ +++ +R L E+ E + + ++ + E
Sbjct: 382 LEQRQNELQAMMQRLEETKNMEAAERQKLEDEIRAKQEEVSRIQQEVELKDSETRRLQEE 441
Query: 61 MSKLRRDLEEANIQHESTLANLRKKHNDAVSEMGEQIDQL----------------NKLK 104
+ RR +EA + + + + + +
Sbjct: 442 VEDARRKQDEAAAALLAATTPQHHHVAERADTDPDHDNASDAGSESGGGDLARGPDDLVD 501
Query: 105 TNKEEATTEKVLKQLKHQLNEVQSRL----DEANRTINDL 140
+ T + ++L +QL ++ L DE T D
Sbjct: 502 PVADRRTLAERNERLHNQLKALKQDLARSCDETKETAMDK 541
>2wqd_A Phosphoenolpyruvate-protein phosphotransferase; kinase,
cytoplasm, transport, magnesium, PEP- utilising enzyme,
phosphotransferase system; 2.40A {Staphylococcus
aureus} PDB: 2hro_A
Length = 572
Score = 26.0 bits (58), Expect = 6.5
Identities = 11/58 (18%), Positives = 22/58 (37%), Gaps = 9/58 (15%)
Query: 2 QARIYELEEEVEVERQSRAK---AEKQRADLAR-----ELEELGERLEEAGGATSAQI 51
+A + E ++ ++ + E + + A EL ++ E GA A I
Sbjct: 18 KAYLLV-EPDLTFDKNEKVTDVEGEVAKFNSAIEASKVELTKIRNNAEVQLGADKAAI 74
>3u06_A Protein claret segregational; motor domain, stalk rotation, power
stroke, kinesin-14, MICR binding, NCD, transport,
molecular motor; HET: ADP GOL; 2.35A {Drosophila
melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Length = 412
Score = 25.7 bits (57), Expect = 6.9
Identities = 12/42 (28%), Positives = 17/42 (40%)
Query: 1 MQARIYELEEEVEVERQSRAKAEKQRADLARELEELGERLEE 42
M + L EV RQ + + A ELE E+L +
Sbjct: 1 MGSMHAALSTEVVHLRQRTEELLRCNEQQAAELETCKEQLFQ 42
>3kzx_A HAD-superfamily hydrolase, subfamily IA, variant; ssgcid, NIH,
niaid, SBRI, UW, emerald biostructures, ehrlich
chaffeensis; 1.90A {Ehrlichia chaffeensis}
Length = 231
Score = 25.3 bits (56), Expect = 8.4
Identities = 17/80 (21%), Positives = 25/80 (31%), Gaps = 23/80 (28%)
Query: 51 IELNKKREAEMSKLRRD-LEEANIQHESTLANLRKKHNDAVSEMGEQIDQLNKLK----- 104
I L KR E + L + LE++ L ND E+ L+ LK
Sbjct: 75 ITLLGKRWKEATILYENSLEKSQKSDNFML-------NDGAIEL------LDTLKENNIT 121
Query: 105 ----TNKEEATTEKVLKQLK 120
+NK +
Sbjct: 122 MAIVSNKNGERLRSEIHHKN 141
>2hwg_A Phosphoenolpyruvate-protein phosphotransferase; enzyme I,
phosphoenolpyruvate:sugar phosphotransferase system,
PTS; HET: NEP; 2.70A {Escherichia coli} PDB: 2kx9_A
2xdf_A 2l5h_A
Length = 575
Score = 25.6 bits (57), Expect = 8.4
Identities = 12/59 (20%), Positives = 25/59 (42%), Gaps = 10/59 (16%)
Query: 2 QARIYELEEEVEVERQSRAK----AEKQRADLAR-----ELEELGERLEEAGGATSAQI 51
+A + + E+E+ ++R+ + E +R R +LE + + E G I
Sbjct: 15 KALLLK-EDEIVIDRKKISADQVDQEVERFLSGRAKASAQLETIKTKAGETFGEEKEAI 72
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM,
protein engineering, structural protein; HET: ADP; 2.80A
{Dictyostelium discoideum} SCOP: k.1.1.1
Length = 1010
Score = 25.8 bits (57), Expect = 8.7
Identities = 15/90 (16%), Positives = 31/90 (34%), Gaps = 15/90 (16%)
Query: 1 MQARIYELEEEVEVERQSRAKAEKQRADLARELEELGERL-------------EEAGGAT 47
+QA++ LE + ++ + +L EL ++ G
Sbjct: 921 VQAKLKNLEAFDGECQSLEGQSNSDLLSILAQLTELNYNGVPELTERKDTFFAQQWTGVK 980
Query: 48 SAQIELNKKREAEMSKLRR--DLEEANIQH 75
S+ AE+ +L++ DL + H
Sbjct: 981 SSAETYKNTLLAELERLQKIEDLHHHHHHH 1010
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.304 0.122 0.299
Gapped
Lambda K H
0.267 0.0529 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,168,772
Number of extensions: 128978
Number of successful extensions: 917
Number of sequences better than 10.0: 1
Number of HSP's gapped: 758
Number of HSP's successfully gapped: 286
Length of query: 153
Length of database: 6,701,793
Length adjustment: 85
Effective length of query: 68
Effective length of database: 4,328,508
Effective search space: 294338544
Effective search space used: 294338544
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)
S2: 53 (24.7 bits)