RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy6538
         (153 letters)



>d2bdea1 c.108.1.23 (A:2-459) Cytosolic IMP-GMP specific
           5'-nucleotidase {Legionella pneumophila [TaxId: 446]}
          Length = 458

 Score = 31.4 bits (71), Expect = 0.034
 Identities = 15/83 (18%), Positives = 37/83 (44%), Gaps = 3/83 (3%)

Query: 5   IYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEMSKL 64
           + EL EE+  + ++    EK+  +     +EL ++  +    T +  E +++ + E+  L
Sbjct: 323 VEELGEEIASQIRAL-PIEKKIGEAMAIKKELEQKYVDL--CTRSIDESSQQYDQEIHDL 379

Query: 65  RRDLEEANIQHESTLANLRKKHN 87
           +  +   ++Q    L      +N
Sbjct: 380 QLQISTVDLQISRLLQEQNSFYN 402


>d7reqa1 c.1.19.1 (A:4-560) Methylmalonyl-CoA mutase alpha subunit,
           domain 1 {Propionibacterium freudenreichii, subsp.
           shermanii [TaxId: 1744]}
          Length = 557

 Score = 27.0 bits (59), Expect = 1.1
 Identities = 24/125 (19%), Positives = 46/125 (36%), Gaps = 15/125 (12%)

Query: 22  AEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRRDLEEAN--------- 72
            E+   DLAR+     + +E+ GG   A  +   K   E +  R      +         
Sbjct: 406 VEELTWDLARKAWGHIQEVEKVGGMAKAIEKGIPKMRIEEAAARTQARIDSGRQPLIGVN 465

Query: 73  ---IQHESTLANLRKKHNDAVSEMGEQIDQLNKLKTNKEEATTEKVLKQLKHQLNEVQSR 129
              ++HE  L  L+    D  + + EQ  +L KL+  ++    +  L ++         +
Sbjct: 466 KYRLEHEPPLDVLK---VDNSTVLAEQKAKLVKLRAERDPEKVKAALDKITWAAGNPDDK 522

Query: 130 LDEAN 134
             + N
Sbjct: 523 DPDRN 527


>d2obpa1 a.4.5.71 (A:12-92) Putative DNA-binding protein ReutB4095
          {Ralstonia eutropha [TaxId: 106590]}
          Length = 81

 Score = 25.6 bits (56), Expect = 1.3
 Identities = 12/36 (33%), Positives = 17/36 (47%)

Query: 33 LEELGERLEEAGGATSAQIELNKKREAEMSKLRRDL 68
          L  L E   E G    +  ++ K+ +  MS LRR L
Sbjct: 10 LLVLREAGIENGATPWSLPKIAKRAQLPMSVLRRVL 45


>d2f9ya1 c.14.1.4 (A:4-319) Acetyl-coenzyme A carboxylase carboxyl
          transferase subunit alpha, AccA {Escherichia coli
          [TaxId: 562]}
          Length = 316

 Score = 24.7 bits (53), Expect = 5.8
 Identities = 10/38 (26%), Positives = 18/38 (47%)

Query: 5  IYELEEEVEVERQSRAKAEKQRADLARELEELGERLEE 42
          I ELE +++       + EK   ++  E+  L E+  E
Sbjct: 9  IAELEAKIDSLTAGSRQDEKLDINIDEEVHRLREKSVE 46


>d1v6sa_ c.86.1.1 (A:) Phosphoglycerate kinase {Thermus thermophilus
           [TaxId: 274]}
          Length = 390

 Score = 24.7 bits (53), Expect = 6.0
 Identities = 6/15 (40%), Positives = 11/15 (73%)

Query: 135 RTINDLDVARKKLII 149
           RT+ DLD   K++++
Sbjct: 2   RTLLDLDPKGKRVLV 16


>d16pka_ c.86.1.1 (A:) Phosphoglycerate kinase {Trypanosoma brucei
           [TaxId: 5691]}
          Length = 415

 Score = 24.4 bits (52), Expect = 7.9
 Identities = 6/15 (40%), Positives = 12/15 (80%)

Query: 135 RTINDLDVARKKLII 149
           ++IN+ D+  KK++I
Sbjct: 3   KSINECDLKGKKVLI 17


>d2tssa2 d.15.6.1 (A:94-194) Toxic shock syndrome toxin-1 (TSST-1)
           {Staphylococcus aureus [TaxId: 1280]}
          Length = 101

 Score = 23.6 bits (51), Expect = 8.0
 Identities = 7/36 (19%), Positives = 16/36 (44%)

Query: 90  VSEMGEQIDQLNKLKTNKEEATTEKVLKQLKHQLNE 125
           V   G+        K +K++     +  +++HQL +
Sbjct: 11  VKVHGKDSPLKYWPKFDKKQLAISTLDFEIRHQLTQ 46


>d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling
          factor, TRCF {Escherichia coli [TaxId: 562]}
          Length = 233

 Score = 24.0 bits (51), Expect = 8.2
 Identities = 12/70 (17%), Positives = 23/70 (32%), Gaps = 1/70 (1%)

Query: 19 RAKAEKQRADLARELEEL-GERLEEAGGATSAQIELNKKREAEMSKLRRDLEEANIQHES 77
          R KA ++  D+A EL ++  +R  + G A     E  +             +   I    
Sbjct: 9  RQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAINAVL 68

Query: 78 TLANLRKKHN 87
          +        +
Sbjct: 69 SDMCQPLAMD 78


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.304    0.122    0.299 

Gapped
Lambda     K      H
   0.267   0.0506    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 488,744
Number of extensions: 21752
Number of successful extensions: 181
Number of sequences better than 10.0: 1
Number of HSP's gapped: 173
Number of HSP's successfully gapped: 92
Length of query: 153
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 75
Effective length of database: 1,336,656
Effective search space: 100249200
Effective search space used: 100249200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)
S2: 49 (23.2 bits)