Query psy654
Match_columns 224
No_of_seqs 158 out of 380
Neff 3.7
Searched_HMMs 29240
Date Fri Aug 16 20:38:29 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy654.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/654hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2cqa_A RUVB-like 2; TIP48, TIP 100.0 3.1E-41 1.1E-45 261.9 10.2 94 7-100 2-95 (95)
2 2c9o_A RUVB-like 1; hexameric 99.6 1.1E-14 3.9E-19 132.8 11.6 171 2-207 114-299 (456)
3 2cqa_A RUVB-like 2; TIP48, TIP 97.6 2.1E-05 7.1E-10 61.0 1.6 31 161-191 65-95 (95)
4 1giy_D 50S ribosomal protein L 66.1 8.4 0.00029 32.4 5.1 53 12-77 7-59 (178)
5 3uk6_A RUVB-like 2; hexameric 58.1 0.58 2E-05 39.8 -3.5 57 146-207 134-193 (368)
6 1rl2_A Protein (ribosomal prot 53.6 5.5 0.00019 32.1 1.8 52 12-76 7-58 (137)
7 3j21_B 50S ribosomal protein L 52.3 25 0.00085 30.9 5.8 49 16-77 38-86 (239)
8 2oqk_A Putative translation in 49.0 63 0.0021 24.9 7.1 63 10-86 26-94 (117)
9 4a17_A RPL8; eukaryotic riboso 45.5 25 0.00084 31.4 4.8 55 13-78 36-93 (264)
10 1vq8_A 50S ribosomal protein L 39.0 43 0.0015 29.4 5.3 49 16-77 36-84 (240)
11 3udc_A Small-conductance mecha 37.1 13 0.00045 31.9 1.7 34 64-97 125-158 (285)
12 3r8s_C 50S ribosomal protein L 36.3 22 0.00075 31.8 3.0 53 12-77 66-118 (271)
13 2hcu_A 3-isopropylmalate dehyd 36.2 35 0.0012 29.2 4.2 33 51-85 135-167 (213)
14 1aqt_A ATP synthase; hydrolase 34.1 1.6E+02 0.0056 22.8 7.7 72 14-101 11-94 (138)
15 1yfb_A Transition state regula 34.1 54 0.0018 22.5 4.1 37 45-84 16-52 (59)
16 2l66_A SSO7C4, transcriptional 32.4 46 0.0016 21.8 3.5 34 47-83 8-41 (53)
17 2vv5_A MSCS, small-conductance 31.3 16 0.00055 31.5 1.3 34 64-97 126-159 (286)
18 2k52_A Uncharacterized protein 28.0 1.4E+02 0.0049 20.4 5.6 12 16-27 6-17 (80)
19 3v2d_D 50S ribosomal protein L 27.9 46 0.0016 29.8 3.6 48 17-77 73-120 (276)
20 3iz5_B 60S ribosomal protein L 27.6 33 0.0011 30.6 2.6 52 12-76 34-90 (261)
21 1mvf_D MAZE protein, PEMI-like 27.4 53 0.0018 23.0 3.3 36 47-85 9-44 (82)
22 3e0e_A Replication protein A; 27.2 73 0.0025 23.1 4.1 60 18-84 15-77 (97)
23 2e5y_A ATP synthase epsilon ch 25.6 1.5E+02 0.0052 22.9 5.9 72 14-101 11-93 (133)
24 4exr_A Putative lipoprotein; Y 24.7 1.5E+02 0.0053 23.9 6.0 43 20-86 128-170 (174)
25 2f9h_A PTS system, IIA compone 24.3 27 0.00094 27.7 1.4 25 65-89 52-76 (129)
26 3dm3_A Replication factor A; p 24.1 1.4E+02 0.0049 22.1 5.3 62 17-85 17-81 (105)
27 2ftc_B Mitochondrial ribosomal 23.5 1.2E+02 0.0042 24.2 5.1 42 23-79 1-43 (136)
28 2k50_A Replication factor A re 23.3 1.3E+02 0.0046 21.7 5.0 58 18-77 20-80 (115)
29 2rq6_A ATP synthase epsilon ch 22.5 2.6E+02 0.0088 21.7 6.7 72 14-101 10-92 (138)
30 3h5j_A 3-isopropylmalate dehyd 22.2 70 0.0024 26.6 3.5 37 52-88 115-152 (171)
No 1
>2cqa_A RUVB-like 2; TIP48, TIP49B, reptin 52, ECP-51, TAP54-beta, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.40.4.14
Probab=100.00 E-value=3.1e-41 Score=261.94 Aligned_cols=94 Identities=76% Similarity=1.044 Sum_probs=92.7
Q ss_pred eeceeEEEeeeEEEEEEEEEEEccCCCCCCCeEEEEEEEecCceeeeeccHHHHHHHHHccccccceEEEEcCCCcEEEe
Q psy654 7 HSDTNHIEETEMIEGEVVEIQIERPATGLGSKVGKLTMKTTEMETSYDLGAKMIEAIGKEKVQAGDVITIDKATGKITRL 86 (224)
Q Consensus 7 sigvrikE~~ev~EGeVvei~i~~~~~~~~~~v~~itLkT~~~e~~~~lg~~m~e~l~kekV~~GDVI~Id~~tG~v~rl 86 (224)
|||+||||++|||||||+||+++++.+||+++.++|+|||+||+++|+||++|++||+||||++|||||||++||+|+|+
T Consensus 2 sIGvRIkE~keVyEGEV~ei~~~~~~~~~~~~~~~itLkT~d~ek~l~lg~~i~e~L~kekV~~GDVI~Id~~sG~V~kl 81 (95)
T 2cqa_A 2 SSGSSGKEETEIIEGEVVEIQIDRPATGTGSKVGKLTLKTTEMETIYDLGTKMIESLTKDKVQAGDVITIDKATGKISKL 81 (95)
T ss_dssp CCCCSCCCCCSEEEEEEEEEEEECTTSSSSSCEEEEEEECSSSEEEEEECSHHHHHHHHTTCCTTSEEEEETTTTEEEEE
T ss_pred CcEEEEEEEEEEEEEEEEEEEEeecCCCCcceEEEEEEEecCCcEEEeCCHHHHHHHHHcCceeCCEEEEEccCCEEEEE
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccccccccccccc
Q psy654 87 GRSFTRARDYDATG 100 (224)
Q Consensus 87 GRs~~~a~~yD~~~ 100 (224)
||||++|++||++|
T Consensus 82 GRs~~~a~~yDl~g 95 (95)
T 2cqa_A 82 GRSFTRARSGPSSG 95 (95)
T ss_dssp ECCCCCCCCCSCCC
T ss_pred EEeeccccccccCC
Confidence 99999999999986
No 2
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.57 E-value=1.1e-14 Score=132.84 Aligned_cols=171 Identities=25% Similarity=0.374 Sum_probs=129.6
Q ss_pred cccceeeceeEEEeeeEEEEEEEEEEEccCCC---CCCCeEE--EEEEEecCceeeeeccHHHHHHHHHccccccceEEE
Q psy654 2 SQMSTHSDTNHIEETEMIEGEVVEIQIERPAT---GLGSKVG--KLTMKTTEMETSYDLGAKMIEAIGKEKVQAGDVITI 76 (224)
Q Consensus 2 ~~~r~sigvrikE~~ev~EGeVvei~i~~~~~---~~~~~v~--~itLkT~~~e~~~~lg~~m~e~l~kekV~~GDVI~I 76 (224)
+.|++++|.+..+..-+|-.|+-.+-..+..+ +++.... .++|+|.++++++++.++++++|.++++..||+|+|
T Consensus 114 ~~f~~a~~~~~~~~~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~i 193 (456)
T 2c9o_A 114 ENFRRAIGLRIKETKEVYEGEVTELTPCETENPMGGYGKTISHVIIGLKTAKGTKQLKLDPSIFESLQKERVEAGDVIYI 193 (456)
T ss_dssp HHHHHTEEEEEEEEEEEEEEEEEEEEEC--------------CEEEEEEETTEEEEEEECHHHHHHHHHTTCCTTEEEEE
T ss_pred HHHHHHHhhhhcCCcEEEEechhhcccccCCCCCCCcchHHHHHHHHHhccccchhHhhhHHHHHHHhhccCCCCCEEEE
Confidence 46888999999999999999999998877655 3343332 368999999999999999999999999999999999
Q ss_pred EcCCCcEEEeeccccccccccccccccccccCCCcccccccccccccccccccCccCCCCCCCCceeeeeeeecccccee
Q psy654 77 DKATGKITRLGRSFTRARDYDATGAQTRNTLPSRSRHVSSWGVQKDVVQSISNNIICPVVPRPESSRSEDSGSTVTLHEI 156 (224)
Q Consensus 77 d~~tG~v~rlGRs~~~a~~yD~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~P~Gev~k~ke~v~~vTLHdl 156 (224)
.++|+.+.++++++.+...||.+... ++ | +| .+++.+++++.+.+++|||
T Consensus 194 ~attn~~~~ld~a~~r~~rfd~~~~~--~v------------------~-------~p---~~~~~~R~~il~~~~~~dl 243 (456)
T 2c9o_A 194 EANSGAVKRQGRCDTYATEFDLEAEE--YV------------------P-------LP---KGDVHKKKEIIQDVTLHDL 243 (456)
T ss_dssp ETTTCCEEEEEEETTSCCTTSCSSSS--EE------------------C-------CC---CSCSEEEEEEEEEEEHHHH
T ss_pred EcCCCCcccCChhhcCCcccCcceeE--ec------------------C-------CC---chhHHHHHHHHHHHHHHHH
Confidence 99999999999999999999985433 56 6 55 9999999999999999999
Q ss_pred eeee---cC--ceE-E----ecCCCCccccchhcccccchhhhhccccccccCeeEecccc
Q psy654 157 VDVQ---AG--DVI-T----IDKATGKITRLGRSFTRARDYDATGAQTRQCNLNEIVPTTH 207 (224)
Q Consensus 157 D~VN---qG--DVI-l----Id~~tGEITkegRses~a~dIDk~VnK~V~eGKAEivpgvl 207 (224)
|.++ +| |+. + +.+..++|....|.. ++....+|.+++.++++|+|+
T Consensus 244 ~~~a~~t~ggadl~~l~~~i~~p~~~~I~~~lr~~-----I~~~l~~~~~~g~~~v~~~Vl 299 (456)
T 2c9o_A 244 DVANARPQGGQDILSMMGQLMKPKKTEITDKLRGE-----INKVVNKYIDQGIAELVPGVL 299 (456)
T ss_dssp HHTC-----------------------------CH-----HHHHHHHHHHTTSEEEEECEE
T ss_pred HHHHHhCCChhHHHHHHhhhcccchhhHHHHHHHH-----HHHHHHHHHHhccccccceEE
Confidence 9998 44 432 2 233578999888888 999999999999999999984
No 3
>2cqa_A RUVB-like 2; TIP48, TIP49B, reptin 52, ECP-51, TAP54-beta, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.40.4.14
Probab=97.56 E-value=2.1e-05 Score=61.01 Aligned_cols=31 Identities=77% Similarity=1.098 Sum_probs=29.2
Q ss_pred cCceEEecCCCCccccchhcccccchhhhhc
Q psy654 161 AGDVITIDKATGKITRLGRSFTRARDYDATG 191 (224)
Q Consensus 161 qGDVIlId~~tGEITkegRses~a~dIDk~V 191 (224)
.||+|+|++++|.|++.|||+++|+|||++.
T Consensus 65 ~GDVI~Id~~sG~V~klGRs~~~a~~yDl~g 95 (95)
T 2cqa_A 65 AGDVITIDKATGKISKLGRSFTRARSGPSSG 95 (95)
T ss_dssp TTSEEEEETTTTEEEEEECCCCCCCCCSCCC
T ss_pred eCCEEEEEccCCEEEEEEEeeccccccccCC
Confidence 6899999999999999999999999999863
No 4
>1giy_D 50S ribosomal protein L2; ribosome assembly, protein synthesis, LIFE; 5.50A {Thermus thermophilus} SCOP: i.1.1.1 PDB: 1ml5_d* 1yl3_D 2b66_D 2b9n_D 2b9p_D
Probab=66.12 E-value=8.4 Score=32.43 Aligned_cols=53 Identities=17% Similarity=0.302 Sum_probs=39.9
Q ss_pred EEEeeeEEEEEEEEEEEccCCCCCCCeEEEEEEEecCceeeeeccHHHHHHHHHccccccceEEEE
Q psy654 12 HIEETEMIEGEVVEIQIERPATGLGSKVGKLTMKTTEMETSYDLGAKMIEAIGKEKVQAGDVITID 77 (224)
Q Consensus 12 ikE~~ev~EGeVvei~i~~~~~~~~~~v~~itLkT~~~e~~~~lg~~m~e~l~kekV~~GDVI~Id 77 (224)
+++.+.-+.|.|++|+.+-.++ ..++.| .-.|+++.|-|.|+ ++.+||+|+.-
T Consensus 7 f~r~~~~i~~~V~~IeyDP~Rs---A~IAlv--~y~dg~~~yilAp~--------gl~~Gd~I~~g 59 (178)
T 1giy_D 7 FKRDKDGIPGRVATIEYDPNRS---ANIALI--NYADGEKRYIIAPK--------NLKVGMEIMSG 59 (178)
T ss_pred cccccCCccEEEEEEEECCCCC---eEEEEE--EecCCCEEEEECcc--------CCccccEEEEC
Confidence 5566666799999999876443 346665 44677899998885 99999999973
No 5
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=58.13 E-value=0.58 Score=39.82 Aligned_cols=57 Identities=30% Similarity=0.306 Sum_probs=31.2
Q ss_pred eeeeccccceeeeeec---CceEEecCCCCccccchhcccccchhhhhccccccccCeeEecccc
Q psy654 146 DSGSTVTLHEIVDVQA---GDVITIDKATGKITRLGRSFTRARDYDATGAQTRQCNLNEIVPTTH 207 (224)
Q Consensus 146 e~v~~vTLHdlD~VNq---GDVIlId~~tGEITkegRses~a~dIDk~VnK~V~eGKAEivpgvl 207 (224)
+..+.++||++|.++. |...++...+|++....|.. ++.....+...++....|||+
T Consensus 134 ~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~-----~~~~~~~~~~~g~~~~~~~vl 193 (368)
T 3uk6_A 134 GAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQ-----INAKVAEWREEGKAEIIPGVL 193 (368)
T ss_dssp ----CEEHHHHHHHTC----CCSCC-------CHHHHHH-----HHHHHHHHHHHTC---CBCEE
T ss_pred hccccccHhhhhhhhcccccchhhccCcccccHHHHHHH-----HHHHHHHhhhhccccccCceE
Confidence 6788999999999982 22345556678888888877 777777777777777666664
No 6
>1rl2_A Protein (ribosomal protein L2); RNA-binding domain, peptidyltransferease center, X-RAY diffraction; 2.30A {Geobacillus stearothermophilus} SCOP: b.34.5.3 b.40.4.5 PDB: 1c04_A 487d_I
Probab=53.60 E-value=5.5 Score=32.10 Aligned_cols=52 Identities=17% Similarity=0.307 Sum_probs=38.3
Q ss_pred EEEeeeEEEEEEEEEEEccCCCCCCCeEEEEEEEecCceeeeeccHHHHHHHHHccccccceEEE
Q psy654 12 HIEETEMIEGEVVEIQIERPATGLGSKVGKLTMKTTEMETSYDLGAKMIEAIGKEKVQAGDVITI 76 (224)
Q Consensus 12 ikE~~ev~EGeVvei~i~~~~~~~~~~v~~itLkT~~~e~~~~lg~~m~e~l~kekV~~GDVI~I 76 (224)
+++.+.-+.|.|++|+.+..++ ..++.+ +-.|+++.|=|.|+ ++++||+|+.
T Consensus 7 f~r~~~~i~~~V~~IeyDPnRs---A~IAlv--~y~dg~k~yIlAp~--------gl~~Gd~I~~ 58 (137)
T 1rl2_A 7 FKRDKDGIPGRVATIEYDPNRS---ANIALI--NYADGEKRYIIAPK--------NLKVGMEIMS 58 (137)
T ss_dssp SSCCCTTCCEEEEEEEEEGGGT---EEEEEE--EETTSCEEEEECCT--------TCCTTCEECB
T ss_pred cccccCCccEEEEEEEECCCCC---EEEEEE--EeCCCCEEEEEecc--------cCccceEEEE
Confidence 3444444689999999876443 345555 45778899999886 9999999986
No 7
>3j21_B 50S ribosomal protein L2P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=52.25 E-value=25 Score=30.91 Aligned_cols=49 Identities=18% Similarity=0.230 Sum_probs=38.1
Q ss_pred eeEEEEEEEEEEEccCCCCCCCeEEEEEEEecCceeeeeccHHHHHHHHHccccccceEEEE
Q psy654 16 TEMIEGEVVEIQIERPATGLGSKVGKLTMKTTEMETSYDLGAKMIEAIGKEKVQAGDVITID 77 (224)
Q Consensus 16 ~ev~EGeVvei~i~~~~~~~~~~v~~itLkT~~~e~~~~lg~~m~e~l~kekV~~GDVI~Id 77 (224)
+.-+.|.|++|+.|-..+ ..++.|.. .|+++.|=|.++ ++.+||+|+.-
T Consensus 38 ~~~i~g~V~~IeyDPnRs---A~IALV~~--~dgek~YIlApe--------Gl~vGd~I~sG 86 (239)
T 3j21_B 38 EKTLRGVVEEIMHDPGRT---APVARVKF--ENGIEKLIIAPE--------GLLVGQEIYIG 86 (239)
T ss_dssp TCCEEEEEEEEEEETTTT---EEEEEEEE--SSSCEEEECCBT--------TCCTTCEEEES
T ss_pred CCCccEEEEEEEECCCCC---eeEEEEEe--cCCCEEEEEccc--------cCccccEEEEC
Confidence 456789999999876543 34665554 678999999885 99999999973
No 8
>2oqk_A Putative translation initiation factor EIF-1A; malaria, eukaryotic initiation facto SGC, structural genomics; 1.80A {Cryptosporidium parvum iowa II}
Probab=49.05 E-value=63 Score=24.89 Aligned_cols=63 Identities=22% Similarity=0.256 Sum_probs=42.7
Q ss_pred eeEEEeeeEEEEEEEEEEEccCCCCCCCeEEEEEEEecCceee-eeccHHHHHHHHHccccccceEEEEcC-----CCcE
Q psy654 10 TNHIEETEMIEGEVVEIQIERPATGLGSKVGKLTMKTTEMETS-YDLGAKMIEAIGKEKVQAGDVITIDKA-----TGKI 83 (224)
Q Consensus 10 vrikE~~ev~EGeVvei~i~~~~~~~~~~v~~itLkT~~~e~~-~~lg~~m~e~l~kekV~~GDVI~Id~~-----tG~v 83 (224)
+...++.++ +|.|++..-. +...+++.++... -.+..+|-. +-.+.+||.+.++.. .|.|
T Consensus 26 ~~~~~~~e~-~G~Vi~~lgn----------~~y~V~~~dG~~~l~~i~GK~Rk---~I~i~~GD~V~ve~~~~~~~kG~I 91 (117)
T 2oqk_A 26 LVFKEEGQE-YGQVQRMLGN----------GRLDAYCFDGQKRLCHIRGKMRK---KVWVNPGDIVLVSLRDFQDSKGDI 91 (117)
T ss_dssp CCCCCTTEE-EEEEEEEEET----------TEEEEEETTSCEEEEECCHHHHH---HSCCCTTCEEEEEECTTCTTEEEE
T ss_pred ccCCCCCEE-EEEEEEEcCC----------CEEEEEeCCCCEEEEEEcCceec---CCcCCCCCEEEEEEEcCCCCeEEE
Confidence 446677787 5989886510 2456666666443 478888776 668889999999765 5666
Q ss_pred EEe
Q psy654 84 TRL 86 (224)
Q Consensus 84 ~rl 86 (224)
..+
T Consensus 92 ~~~ 94 (117)
T 2oqk_A 92 ILK 94 (117)
T ss_dssp EEE
T ss_pred EEE
Confidence 543
No 9
>4a17_A RPL8; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_A 4a1c_A 4a1e_A
Probab=45.52 E-value=25 Score=31.41 Aligned_cols=55 Identities=13% Similarity=0.170 Sum_probs=39.6
Q ss_pred EEeeeEEEEEEEEEEEccCCCCCCCeEEEEEEEec---CceeeeeccHHHHHHHHHccccccceEEEEc
Q psy654 13 IEETEMIEGEVVEIQIERPATGLGSKVGKLTMKTT---EMETSYDLGAKMIEAIGKEKVQAGDVITIDK 78 (224)
Q Consensus 13 kE~~ev~EGeVvei~i~~~~~~~~~~v~~itLkT~---~~e~~~~lg~~m~e~l~kekV~~GDVI~Id~ 78 (224)
++.+.-+.|.|++|+.|-..+ ..++.|..... +.++.|=|.++ ++.+||+|+.-+
T Consensus 36 ~r~~~~i~g~V~~IeyDPnRs---A~IAlv~~~dg~~~k~~k~YIlApe--------Gl~vGd~I~sg~ 93 (264)
T 4a17_A 36 AERQGYIRGCIRDIVHEPGRG---APLAEVAFRDPYRYKTNKEHFIAAE--------GQYSGQYVYCGL 93 (264)
T ss_dssp HHHHSEEEEEEEEEECCTTCS---SCEEEEEEECTTSSCEEEEEEECBT--------TCBTTCEEEEES
T ss_pred cccCCCcCEEEEEEEECCCCC---ceEEEEEecCCCcccceEEEEEeec--------CCccccEEEECC
Confidence 344556889999999766443 35777665432 22889998885 999999999854
No 10
>1vq8_A 50S ribosomal protein L2P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: b.34.5.3 b.40.4.5 PDB: 1vq4_A* 1vq5_A* 1vq6_A* 1vq7_A* 1s72_A* 1vq9_A* 1vqk_A* 1vql_A* 1vqm_A* 1vqn_A* 1vqo_A* 1vqp_A* 1yhq_A* 1yi2_A* 1yij_A* 1yit_A* 1yj9_A* 1yjn_A* 1yjw_A* 2otj_A* ...
Probab=39.03 E-value=43 Score=29.44 Aligned_cols=49 Identities=20% Similarity=0.375 Sum_probs=37.2
Q ss_pred eeEEEEEEEEEEEccCCCCCCCeEEEEEEEecCceeeeeccHHHHHHHHHccccccceEEEE
Q psy654 16 TEMIEGEVVEIQIERPATGLGSKVGKLTMKTTEMETSYDLGAKMIEAIGKEKVQAGDVITID 77 (224)
Q Consensus 16 ~ev~EGeVvei~i~~~~~~~~~~v~~itLkT~~~e~~~~lg~~m~e~l~kekV~~GDVI~Id 77 (224)
+.-+.|.|++|+.|-..+ ..++.| +-.|+++.|-|.|+ ++.+||+|+.-
T Consensus 36 ~~~i~g~V~~IeyDPnRs---A~IAlv--~y~dg~k~yIlAp~--------gl~vGd~I~sg 84 (240)
T 1vq8_A 36 GDVIAGTVVDIEHDPARS---APVAAV--EFEDGDRRLILAPE--------GVGVGDELQVG 84 (240)
T ss_dssp SSCCEEEEEEEEEETTTT---EEEEEE--EETTSCEEEECCBT--------TCBTTCEEEBS
T ss_pred cCCccEEEEEEEECCCCc---eeEEEE--EecCCCEEEEEecC--------CCccCeEEEEC
Confidence 445799999999876443 345655 44777899999886 99999999963
No 11
>3udc_A Small-conductance mechanosensitive channel, C-TER peptide from small-conductance...; membrane protein; 3.35A {Thermoanaerobacter tengcongensis} PDB: 3t9n_A*
Probab=37.11 E-value=13 Score=31.93 Aligned_cols=34 Identities=24% Similarity=0.532 Sum_probs=29.2
Q ss_pred HHccccccceEEEEcCCCcEEEeecccccccccc
Q psy654 64 GKEKVQAGDVITIDKATGKITRLGRSFTRARDYD 97 (224)
Q Consensus 64 ~kekV~~GDVI~Id~~tG~v~rlGRs~~~a~~yD 97 (224)
...-.++||.|.|+-.+|.|..+|=-.++-+.+|
T Consensus 125 ~~~pf~vGD~I~i~~~~G~V~~I~l~~T~i~t~d 158 (285)
T 3udc_A 125 FEDQFSVGDYVTINGISGTVEEIGLRVTKIRGFS 158 (285)
T ss_dssp HTTSCCTTCEEEETTEEEEEEEECSSEEEEEETT
T ss_pred hhCCccCCCEEEECCEEEEEEEeeeeEEEEecCC
Confidence 3456899999999999999999997778877776
No 12
>3r8s_C 50S ribosomal protein L2; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_C 3j19_C 2wwq_C 3oat_C* 3oas_C* 3ofd_C 3ofc_C 3ofr_C* 3ofz_C* 3og0_C 3ofq_C 3r8t_C 3i1n_C 1vs8_C 1vs6_C 2aw4_C 2awb_C 2vhm_C 2vhn_C 3bbx_C ...
Probab=36.30 E-value=22 Score=31.80 Aligned_cols=53 Identities=19% Similarity=0.265 Sum_probs=39.9
Q ss_pred EEEeeeEEEEEEEEEEEccCCCCCCCeEEEEEEEecCceeeeeccHHHHHHHHHccccccceEEEE
Q psy654 12 HIEETEMIEGEVVEIQIERPATGLGSKVGKLTMKTTEMETSYDLGAKMIEAIGKEKVQAGDVITID 77 (224)
Q Consensus 12 ikE~~ev~EGeVvei~i~~~~~~~~~~v~~itLkT~~~e~~~~lg~~m~e~l~kekV~~GDVI~Id 77 (224)
+++.+.-+.|.|++|+.+-.. +..++.|.. .|+++.|=|.++ ++.+||+|+.-
T Consensus 66 f~r~~~~i~g~V~~IeyDPnR---sA~IAlv~~--~dg~k~YIlAp~--------gl~~Gd~I~sg 118 (271)
T 3r8s_C 66 FKRNKDGIPAVVERLEYDPNR---SANIALVLY--KDGERRYILAPK--------GLKAGDQIQSG 118 (271)
T ss_dssp CSCCCBSCCEEEEEEEECTTS---SSEEEEEEE--TTSCEEEEECBT--------TCCSSCBCCBS
T ss_pred eccccCCCCEEEEEEEECCCC---ceeEEEEEe--cCCCEEEEEeeC--------CCcCCCEEEEC
Confidence 445555567999999987544 345666654 788999998885 99999999864
No 13
>2hcu_A 3-isopropylmalate dehydratase small subunit; beta barrel, lyase; 2.10A {Streptococcus mutans}
Probab=36.17 E-value=35 Score=29.24 Aligned_cols=33 Identities=15% Similarity=0.117 Sum_probs=27.5
Q ss_pred eeeeccHHHHHHHHHccccccceEEEEcCCCcEEE
Q psy654 51 TSYDLGAKMIEAIGKEKVQAGDVITIDKATGKITR 85 (224)
Q Consensus 51 ~~~~lg~~m~e~l~kekV~~GDVI~Id~~tG~v~r 85 (224)
..+.+++..+++|.+. ..||.|.||-++|.|+.
T Consensus 135 Lpl~~~~~~~~~l~~~--~~G~~i~VDl~~~~I~~ 167 (213)
T 2hcu_A 135 LPIIQPKEVRDKLAKL--KPTDEVTVNLFEQKIYS 167 (213)
T ss_dssp EEEECCHHHHHHHHTS--CTTCEEEEETTTTEEEE
T ss_pred CcEEeCHHHHHHHhcc--CCCCEEEEECCCCEEEE
Confidence 3456777788888777 89999999999999973
No 14
>1aqt_A ATP synthase; hydrolase, ATPase, epsilon subunit; 2.30A {Escherichia coli} SCOP: a.2.10.1 b.93.1.1 PDB: 1qo1_J 1bsh_A 1bsn_A 1fs0_E 3oaa_H*
Probab=34.08 E-value=1.6e+02 Score=22.82 Aligned_cols=72 Identities=22% Similarity=0.351 Sum_probs=50.5
Q ss_pred EeeeEEEEEEEEEEEccCCCCC------CCeE-----EEEEEEecCce-eeeeccHHHHHHHHHccccccceEEEEcCCC
Q psy654 14 EETEMIEGEVVEIQIERPATGL------GSKV-----GKLTMKTTEME-TSYDLGAKMIEAIGKEKVQAGDVITIDKATG 81 (224)
Q Consensus 14 E~~ev~EGeVvei~i~~~~~~~------~~~v-----~~itLkT~~~e-~~~~lg~~m~e~l~kekV~~GDVI~Id~~tG 81 (224)
-++.+|+|+|..+.+....+-+ -|.+ |.+.+++.+++ ..|-+ .|=++.+.++
T Consensus 11 P~~~~~~~~v~~V~~p~~~Ge~GILp~H~p~it~L~~G~v~i~~~~g~~~~~~v--------------~gGf~ev~~~-- 74 (138)
T 1aqt_A 11 AEQQMFSGLVEKIQVTGSEGELGIYPGHAPLLTAIKPGMIRIVKQHGHEEFIYL--------------SGGILEVQPG-- 74 (138)
T ss_dssp SSCEEEEEEEEEEEEEBSSSEEEECTTCCCEEEEECSEEEEEEETTTEEEEEEE--------------SSEEEEEETT--
T ss_pred CCceEEeeeEEEEEEECCcCCeEecCCCcceEeEecceEEEEEECCCcEEEEEE--------------eCcEEEEECC--
Confidence 3568899999999886655433 2433 66788876654 33333 3667888776
Q ss_pred cEEEeecccccccccccccc
Q psy654 82 KITRLGRSFTRARDYDATGA 101 (224)
Q Consensus 82 ~v~rlGRs~~~a~~yD~~~~ 101 (224)
+|+-+-....+..|.|....
T Consensus 75 ~vtIla~~A~~~~diD~~~a 94 (138)
T 1aqt_A 75 NVTVLADTAIRGQDLDEARA 94 (138)
T ss_dssp EEEEEESSEEEGGGCCHHHH
T ss_pred EEEEEEeeEEEhhhCCHHHH
Confidence 89999888888888887644
No 15
>1yfb_A Transition state regulatory protein ABRB; , homodimer, bioinformatics, swapped-hairpin barrel, transcription; NMR {Bacillus subtilis} SCOP: b.129.1.3 PDB: 1ysf_A 2k1n_A* 1z0r_A 2ro4_A 2fy9_A 2ro3_A
Probab=34.06 E-value=54 Score=22.48 Aligned_cols=37 Identities=11% Similarity=0.132 Sum_probs=28.4
Q ss_pred EecCceeeeeccHHHHHHHHHccccccceEEEEcCCCcEE
Q psy654 45 KTTEMETSYDLGAKMIEAIGKEKVQAGDVITIDKATGKIT 84 (224)
Q Consensus 45 kT~~~e~~~~lg~~m~e~l~kekV~~GDVI~Id~~tG~v~ 84 (224)
.+.+..-+..|+.++.++| +++.||.+.+..+-|.|.
T Consensus 16 ~kv~~kGqItIPkeiR~~L---gi~~Gd~l~i~~~~~~Ii 52 (59)
T 1yfb_A 16 RKVDELGRVVIPIELRRTL---GIAEKDALEIYVDDEKII 52 (59)
T ss_dssp EECCTTCEEECCHHHHHHT---TCCTTCEEEEEEETTEEE
T ss_pred EEECCCCEEEeCHHHHHHc---CCCCCCEEEEEEECCEEE
Confidence 3444556788999988776 899999999987777654
No 16
>2l66_A SSO7C4, transcriptional regulator, ABRB family; DNA binding protein, transcription regulator; NMR {Sulfolobus solfataricus}
Probab=32.42 E-value=46 Score=21.79 Aligned_cols=34 Identities=12% Similarity=0.235 Sum_probs=26.3
Q ss_pred cCceeeeeccHHHHHHHHHccccccceEEEEcCCCcE
Q psy654 47 TEMETSYDLGAKMIEAIGKEKVQAGDVITIDKATGKI 83 (224)
Q Consensus 47 ~~~e~~~~lg~~m~e~l~kekV~~GDVI~Id~~tG~v 83 (224)
....-+..++.++.++| +++.||.+.+...-|.|
T Consensus 8 v~~kgqi~IPk~ir~~l---gi~~Gd~v~i~~~~~~i 41 (53)
T 2l66_A 8 VSRNYQVTIPAKVRQKF---QIKEGDLVKVTFDESEG 41 (53)
T ss_dssp CCSSSCBCCCHHHHHHS---CCCTTCEEEEEECSSSC
T ss_pred ECCCCEEEeCHHHHHHc---CcCCCCEEEEEEECCEE
Confidence 34455678999988776 89999999988776654
No 17
>2vv5_A MSCS, small-conductance mechanosensitive channel; ION transport, transmembrane, inner membrane, membrane struc membrane protein, membrane; 3.45A {Escherichia coli} SCOP: b.38.1.3 d.58.43.1 f.34.1.1 PDB: 2oau_A
Probab=31.27 E-value=16 Score=31.49 Aligned_cols=34 Identities=18% Similarity=0.205 Sum_probs=29.6
Q ss_pred HHccccccceEEEEcCCCcEEEeecccccccccc
Q psy654 64 GKEKVQAGDVITIDKATGKITRLGRSFTRARDYD 97 (224)
Q Consensus 64 ~kekV~~GDVI~Id~~tG~v~rlGRs~~~a~~yD 97 (224)
...-.++||.|.|+..+|.|..+|=-.+.-+++|
T Consensus 126 ~~~pf~vGD~I~i~g~~G~V~~I~l~~T~i~t~d 159 (286)
T 2vv5_A 126 MFRPFRAGEYVDLGGVAGTVLSVQIFSTTMRTAD 159 (286)
T ss_dssp TTCSSCTTCEEESSSCEEEEEEECSSEEEEECTT
T ss_pred hcCCccCCCEEEECCEEEEEEEEEeEEEEEEeCC
Confidence 4456899999999999999999998778888777
No 18
>2k52_A Uncharacterized protein MJ1198; metal-binding, zinc, zinc-finger, structural genomics, PSI-2, protein structure initiative; NMR {Methanocaldococcus jannaschii}
Probab=27.96 E-value=1.4e+02 Score=20.41 Aligned_cols=12 Identities=25% Similarity=0.457 Sum_probs=9.9
Q ss_pred eeEEEEEEEEEE
Q psy654 16 TEMIEGEVVEIQ 27 (224)
Q Consensus 16 ~ev~EGeVvei~ 27 (224)
-++|+|.|+.+.
T Consensus 6 G~iv~G~V~~v~ 17 (80)
T 2k52_A 6 GKFYKGVVTRIE 17 (80)
T ss_dssp TCEEEEEEEEEE
T ss_pred CCEEEEEEEEEe
Confidence 468999999985
No 19
>3v2d_D 50S ribosomal protein L2; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_B 2hgj_D 2hgq_D 2hgu_D 1vsa_B 2j03_D 2jl6_D 2jl8_D 2v47_D 2v49_D 2wdi_D 2wdj_D 2wdl_D 2wdn_D 2wh2_D 2wh4_D 2wrj_D 2wrl_D 2wro_D 2wrr_D ...
Probab=27.86 E-value=46 Score=29.82 Aligned_cols=48 Identities=17% Similarity=0.271 Sum_probs=36.3
Q ss_pred eEEEEEEEEEEEccCCCCCCCeEEEEEEEecCceeeeeccHHHHHHHHHccccccceEEEE
Q psy654 17 EMIEGEVVEIQIERPATGLGSKVGKLTMKTTEMETSYDLGAKMIEAIGKEKVQAGDVITID 77 (224)
Q Consensus 17 ev~EGeVvei~i~~~~~~~~~~v~~itLkT~~~e~~~~lg~~m~e~l~kekV~~GDVI~Id 77 (224)
.-+.|.|++|+.+-.. +..++.|. -.|+++.|=|.++ ++.+||+|+.-
T Consensus 73 ~~i~g~V~~IeyDPnR---sA~IAlv~--~~dg~k~yIlAp~--------gl~~Gd~I~sg 120 (276)
T 3v2d_D 73 VGIPAKVAAIEYDPNR---SARIALLH--YVDGEKRYIIAPD--------GLQVGQQVVAG 120 (276)
T ss_dssp TTCCEEEEEEECCTTS---SSCEEEEE--ETTSCEEEEECBT--------TCCTTCEECBS
T ss_pred CCCCEEEEEEEECCCC---CceEEEEE--eCCCCEEEEEeeC--------CCcCCCEEEeC
Confidence 3457999999987544 34566654 4688999998885 99999999863
No 20
>3iz5_B 60S ribosomal protein L2 (L2P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_B 2zkr_a
Probab=27.65 E-value=33 Score=30.57 Aligned_cols=52 Identities=15% Similarity=0.209 Sum_probs=36.8
Q ss_pred EEEeeeEEEEEEEEEEEccCCCCCCCeEEEEEEEecCc-----eeeeeccHHHHHHHHHccccccceEEE
Q psy654 12 HIEETEMIEGEVVEIQIERPATGLGSKVGKLTMKTTEM-----ETSYDLGAKMIEAIGKEKVQAGDVITI 76 (224)
Q Consensus 12 ikE~~ev~EGeVvei~i~~~~~~~~~~v~~itLkT~~~-----e~~~~lg~~m~e~l~kekV~~GDVI~I 76 (224)
+++.+.-+.|.|++|+.|-..+ ..++.|.. .|+ ++.|=|.++ ++.+||+|+.
T Consensus 34 f~r~~~~i~g~V~~IeyDPnRs---A~IAlV~~--~dg~~~k~~k~yIlApe--------Gl~vGd~I~s 90 (261)
T 3iz5_B 34 FGERNGYLKGVVTDIIHDPGRG---APLAKVTF--RHPFRYKHQKELFVAAE--------GMYTGQFVYC 90 (261)
T ss_dssp SCCBSSSSEEEEEEEEEETTTT---EEEEEEEC--CCCSSSCCCCCEEECBT--------TCBTTCEEEB
T ss_pred cccccCCccEEEEEEEECCCce---eEEEEEEe--cCCCcccceEEEEEecc--------CCCCCCEEEe
Confidence 3444555789999999876443 34565544 444 478888875 9999999987
No 21
>1mvf_D MAZE protein, PEMI-like protein 1; plasmid addiction, camel antibody, addiction antidote, immun; 1.65A {Escherichia coli} SCOP: b.129.1.1 PDB: 1ub4_C
Probab=27.42 E-value=53 Score=22.99 Aligned_cols=36 Identities=19% Similarity=0.319 Sum_probs=28.4
Q ss_pred cCceeeeeccHHHHHHHHHccccccceEEEEcCCCcEEE
Q psy654 47 TEMETSYDLGAKMIEAIGKEKVQAGDVITIDKATGKITR 85 (224)
Q Consensus 47 ~~~e~~~~lg~~m~e~l~kekV~~GDVI~Id~~tG~v~r 85 (224)
........|+..+.++| ++..||-+.|....|.|.-
T Consensus 9 ~Gns~~v~iPk~~~~~l---gl~~gd~v~i~~~~~~iii 44 (82)
T 1mvf_D 9 WGNSPAVRIPATLMQAL---NLNIDDEVKIDLVDGKLII 44 (82)
T ss_dssp ETTEEEEECCHHHHHHT---TCCTTCBEEEEEETTEEEE
T ss_pred ECCccEEEECHHHHHHc---CCCCCCEEEEEEECCEEEE
Confidence 33456789999988776 7999999999988887653
No 22
>3e0e_A Replication protein A; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 1.60A {Methanococcus maripaludis} PDB: 2k5v_A
Probab=27.19 E-value=73 Score=23.08 Aligned_cols=60 Identities=20% Similarity=0.295 Sum_probs=31.7
Q ss_pred EEEEEEEEEEEccC-CCCCC--CeEEEEEEEecCceeeeeccHHHHHHHHHccccccceEEEEcCCCcEE
Q psy654 18 MIEGEVVEIQIERP-ATGLG--SKVGKLTMKTTEMETSYDLGAKMIEAIGKEKVQAGDVITIDKATGKIT 84 (224)
Q Consensus 18 v~EGeVvei~i~~~-~~~~~--~~v~~itLkT~~~e~~~~lg~~m~e~l~kekV~~GDVI~Id~~tG~v~ 84 (224)
-+.|.|+++..-+. ...-| .++..++|.=.-++-.+.+=....+. .+++||+|.| .|.|+
T Consensus 15 ~i~~~V~~~~~~r~~~~~~G~~~~v~~~~l~DeTG~I~~tlW~~~~~~----~i~~Gdvv~i---~g~v~ 77 (97)
T 3e0e_A 15 TINAEVVTAYPKKEFSRKDGTKGQLKSLFLKDDTGSIRGTLWNELADF----EVKKGDIAEV---SGYVK 77 (97)
T ss_dssp EEEEEEEEECCCEEEC----CCEEEEEEEEEETTEEEEEEEEGGGGGC----CCCTTCEEEE---EEEEE
T ss_pred EEEEEEEECCCceEEEcCCCCeeEEEEEEEECCCCcEEEEEECCcccc----ccCCCCEEEE---EEEEE
Confidence 45677777752121 11112 24666666544444444433332221 7999999999 36763
No 23
>2e5y_A ATP synthase epsilon chain; F1FO ATP synthase, F1-ATPase, epsilon subunit, hydrolase; HET: ATP; 1.92A {Bacillus SP} PDB: 2e5t_A 2e5u_A
Probab=25.59 E-value=1.5e+02 Score=22.88 Aligned_cols=72 Identities=19% Similarity=0.254 Sum_probs=48.3
Q ss_pred EeeeEEEEEEEEEEEccCCCCC------CCeE-----EEEEEEecCceeeeeccHHHHHHHHHccccccceEEEEcCCCc
Q psy654 14 EETEMIEGEVVEIQIERPATGL------GSKV-----GKLTMKTTEMETSYDLGAKMIEAIGKEKVQAGDVITIDKATGK 82 (224)
Q Consensus 14 E~~ev~EGeVvei~i~~~~~~~------~~~v-----~~itLkT~~~e~~~~lg~~m~e~l~kekV~~GDVI~Id~~tG~ 82 (224)
=++.+|+|+|..+.+....+-+ -|.+ |.+.++....+..|-+ .|=++.+..+ +
T Consensus 11 P~~~~~~~~v~~V~~p~~~G~~GILp~H~p~it~L~~G~v~i~~~~~~~~~~v--------------~gGf~ev~~~--~ 74 (133)
T 2e5y_A 11 PDGPVYEDDVEMVSVKAKSGELGILPGHIPLVAPLEISAARLKKGGKTQYIAV--------------SGGFLEVRPD--K 74 (133)
T ss_dssp TTEEEEEEEESEEEEEETTEEEEECTTCCCEEEEEEEEEEEEEETTEEEEEEE--------------EEEEEEEETT--E
T ss_pred CCceEEeceEEEEEEECCcCCeEecCCCcceEeEecceEEEEEECCeEEEEEE--------------cCeEEEEECC--E
Confidence 4577899999999886554433 2333 5567774333333333 3566788776 8
Q ss_pred EEEeecccccccccccccc
Q psy654 83 ITRLGRSFTRARDYDATGA 101 (224)
Q Consensus 83 v~rlGRs~~~a~~yD~~~~ 101 (224)
|+-+-....+..|.|....
T Consensus 75 vtIla~~A~~~~diD~~~a 93 (133)
T 2e5y_A 75 VTILAQAAERAEDIDVLRA 93 (133)
T ss_dssp EEEEESSEEEGGGCCHHHH
T ss_pred EEEEEeEEEEhhhCCHHHH
Confidence 9999888888888887643
No 24
>4exr_A Putative lipoprotein; YPEB domain dimer, structural genomics, joint center for STR genomics, JCSG, protein structure initiative; 1.85A {Clostridium difficile}
Probab=24.66 E-value=1.5e+02 Score=23.89 Aligned_cols=43 Identities=23% Similarity=0.457 Sum_probs=26.4
Q ss_pred EEEEEEEEEccCCCCCCCeEEEEEEEecCceeeeeccHHHHHHHHHccccccceEEEEcCCCcEEEe
Q psy654 20 EGEVVEIQIERPATGLGSKVGKLTMKTTEMETSYDLGAKMIEAIGKEKVQAGDVITIDKATGKITRL 86 (224)
Q Consensus 20 EGeVvei~i~~~~~~~~~~v~~itLkT~~~e~~~~lg~~m~e~l~kekV~~GDVI~Id~~tG~v~rl 86 (224)
-|.|+++++++.. |..+=.+.+.+...+ ++ +.||+.||+|.+.
T Consensus 128 ~G~v~e~eLd~d~---G~~vYevei~~~~~~--~e-------------------v~IDA~tG~Il~~ 170 (174)
T 4exr_A 128 NGIVKEWSLDKDL---DVTFYKIRIDKDKNE--YD-------------------IKVDSKKGTVLKV 170 (174)
T ss_dssp CSEEEEEEEEEET---TEEEEEEEEEETTEE--EE-------------------EEEETTTCCEEEE
T ss_pred CCeEEEEEEEEeC---CEEEEEEEEEECCEE--EE-------------------EEEECCCCCEeee
Confidence 4667777665542 334445666653322 22 7899999999865
No 25
>2f9h_A PTS system, IIA component; alpha-beta structure, beta-barrel, dimer, structural genomic protein structure initiative; 1.57A {Enterococcus faecalis} SCOP: b.161.1.1
Probab=24.26 E-value=27 Score=27.73 Aligned_cols=25 Identities=24% Similarity=0.400 Sum_probs=22.4
Q ss_pred HccccccceEEEEcCCCcEEEeecc
Q psy654 65 KEKVQAGDVITIDKATGKITRLGRS 89 (224)
Q Consensus 65 kekV~~GDVI~Id~~tG~v~rlGRs 89 (224)
+.-+++||.++||..+=.|+.+|-.
T Consensus 52 ~~~i~~Gd~l~i~~~~Y~ItaVG~~ 76 (129)
T 2f9h_A 52 QVTLAEGDHLKIGDTNYTITKVGSF 76 (129)
T ss_dssp GCCCCTTCEEEETTEEEEEEEECTT
T ss_pred cCCcCCCCEEEECCEEEEEEEEhHH
Confidence 4689999999999999999999943
No 26
>3dm3_A Replication factor A; probably plays AN essential for replication of the chromosome, DNA recombination and repair; 2.40A {Methanocaldococcus jannaschii}
Probab=24.13 E-value=1.4e+02 Score=22.07 Aligned_cols=62 Identities=19% Similarity=0.298 Sum_probs=34.9
Q ss_pred eEEEEEEEEEEEccCC-CCCC--CeEEEEEEEecCceeeeeccHHHHHHHHHccccccceEEEEcCCCcEEE
Q psy654 17 EMIEGEVVEIQIERPA-TGLG--SKVGKLTMKTTEMETSYDLGAKMIEAIGKEKVQAGDVITIDKATGKITR 85 (224)
Q Consensus 17 ev~EGeVvei~i~~~~-~~~~--~~v~~itLkT~~~e~~~~lg~~m~e~l~kekV~~GDVI~Id~~tG~v~r 85 (224)
--+.|.|.++.--++. ..-| .++..++|.=.-++-.+.|=...++. .+++||+|.| . |.|+.
T Consensus 17 v~v~g~V~~~~~~r~~~~~~G~~~~v~~~~l~D~TG~IrvtlW~~~a~~----~l~~Gdvv~i-~--g~vk~ 81 (105)
T 3dm3_A 17 ATFEGEVISALPIKEFKRADGSIGKLKSFIVRDETGSIRVTLWDNLTDI----DVGRGDYVRV-R--GYIRE 81 (105)
T ss_dssp EEEEEEEEEEEEEEEEECTTSCEEEEEEEEEEETTEEEEEEEEGGGGGS----CCCTTCEEEE-E--EEEEE
T ss_pred EEEEEEEEECCCceEEEcCCCCeeEEEEEEEECCCCcEEEEEECccccc----ccCCCCEEEE-E--EEEEE
Confidence 3467788877532221 1123 24566777654445455543333332 7999999999 3 66643
No 27
>2ftc_B Mitochondrial ribosomal protein L2; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_B
Probab=23.50 E-value=1.2e+02 Score=24.15 Aligned_cols=42 Identities=14% Similarity=0.293 Sum_probs=27.3
Q ss_pred EEEEEEccCCCCCCCeEEEEEEEecCc-eeeeeccHHHHHHHHHccccccceEEEEcC
Q psy654 23 VVEIQIERPATGLGSKVGKLTMKTTEM-ETSYDLGAKMIEAIGKEKVQAGDVITIDKA 79 (224)
Q Consensus 23 Vvei~i~~~~~~~~~~v~~itLkT~~~-e~~~~lg~~m~e~l~kekV~~GDVI~Id~~ 79 (224)
|++|+.+-.+ +..++.+ .+. ++.|=|.|+ ++++||+|+....
T Consensus 1 V~~IeyDPnR---sA~IAlv----~~~~~k~yIlAp~--------gl~~Gd~I~s~~~ 43 (136)
T 2ftc_B 1 VIQVRYDPCR---SADIALV----AGGSRKRWIIATE--------NMQAGDTILNSNH 43 (136)
T ss_pred CEEEEECCCC---CcEEEEE----ECCCeeEEEEeec--------CCcCCCEEEECCc
Confidence 4556654433 3346655 233 388888875 9999999998433
No 28
>2k50_A Replication factor A related protein; uncharacterized protein, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}
Probab=23.25 E-value=1.3e+02 Score=21.73 Aligned_cols=58 Identities=24% Similarity=0.319 Sum_probs=32.9
Q ss_pred EEEEEEEEE-EEccCCCCCC--CeEEEEEEEecCceeeeeccHHHHHHHHHccccccceEEEE
Q psy654 18 MIEGEVVEI-QIERPATGLG--SKVGKLTMKTTEMETSYDLGAKMIEAIGKEKVQAGDVITID 77 (224)
Q Consensus 18 v~EGeVvei-~i~~~~~~~~--~~v~~itLkT~~~e~~~~lg~~m~e~l~kekV~~GDVI~Id 77 (224)
-+.|.|.++ .+....+..| ..+..++|.=.-++-.+.+=..-.+.+ +.+++||++.|-
T Consensus 20 ~i~~~V~~~~~~~~~~~k~G~~~~~~~~~l~D~TG~I~~t~w~~~~~~~--~~l~~G~vv~i~ 80 (115)
T 2k50_A 20 PVTGRVMKISSPRTFTTRKGREGKLANVIIADDTGELRAVFWTENIKLL--KKFREGDVIRIK 80 (115)
T ss_dssp EEEEEEEEECCCEECCCTTSSCCEEEEEEEEETTEEEEEEEETTGGGGG--GTCCTTSEEEEE
T ss_pred EEEEEEEECCCceEEEcCCCCEEEEEEEEEEeCCCeEEEEEeCchhhhh--hcCCCCCEEEEE
Confidence 456888887 4431122224 456667775444444444444433322 578999999994
No 29
>2rq6_A ATP synthase epsilon chain; F1FO ATP synthase, F1-ATPase, epsilon subunit, ATP synthesis, CF1, hydrogen ION transport, hydrolase; NMR {Thermosynechococcus elongatus} PDB: 2rq7_A
Probab=22.50 E-value=2.6e+02 Score=21.74 Aligned_cols=72 Identities=15% Similarity=0.237 Sum_probs=47.5
Q ss_pred EeeeEEEEEEEEEEEccCCCCCC------CeE-----EEEEEEecCceeeeeccHHHHHHHHHccccccceEEEEcCCCc
Q psy654 14 EETEMIEGEVVEIQIERPATGLG------SKV-----GKLTMKTTEMETSYDLGAKMIEAIGKEKVQAGDVITIDKATGK 82 (224)
Q Consensus 14 E~~ev~EGeVvei~i~~~~~~~~------~~v-----~~itLkT~~~e~~~~lg~~m~e~l~kekV~~GDVI~Id~~tG~ 82 (224)
-++.+|+|+|..+.+.-..+-+| |.+ |.+.+++...+..|-++ |=++.+.. ++
T Consensus 10 P~~~~~~~~v~~V~~p~~~Ge~GILp~H~p~it~L~~G~v~i~~~~~~~~~~v~--------------gGf~ev~~--~~ 73 (138)
T 2rq6_A 10 PDKTVWDAPAEEVILPSTTGQLGILSNHAPLLTALETGVMRVRQDREWVAIALM--------------GGFAEVEN--NE 73 (138)
T ss_dssp SSSEEEEEEESEEEECCTTSCEEEESSCCSEEEEECSEEEEEESSSCEEEEEEC--------------SEEEEECS--SC
T ss_pred CCceEEeeeEEEEEEECCcCCeEEcCCCcceEeEeccEEEEEEECCeEEEEEEc--------------CcEEEEEC--CE
Confidence 35678999999999876655443 333 55677664334334332 55677764 48
Q ss_pred EEEeecccccccccccccc
Q psy654 83 ITRLGRSFTRARDYDATGA 101 (224)
Q Consensus 83 v~rlGRs~~~a~~yD~~~~ 101 (224)
|+-+-....++.|.|....
T Consensus 74 vtIla~~A~~~~dID~~~a 92 (138)
T 2rq6_A 74 VTILVNGAERGDTIDLEKA 92 (138)
T ss_dssp EEEEESCEECSTTCCHHHH
T ss_pred EEEEEeeEEEhhhCCHHHH
Confidence 8888888888888887543
No 30
>3h5j_A 3-isopropylmalate dehydratase small subunit; leucine biosynthesis, isopropylmalate isomerase, LEUD, amino-acid biosynthesis; 1.20A {Mycobacterium tuberculosis} PDB: 3h5h_A 3h5e_A
Probab=22.21 E-value=70 Score=26.59 Aligned_cols=37 Identities=19% Similarity=0.100 Sum_probs=26.6
Q ss_pred eeeccHHHHHHHHHc-cccccceEEEEcCCCcEEEeec
Q psy654 52 SYDLGAKMIEAIGKE-KVQAGDVITIDKATGKITRLGR 88 (224)
Q Consensus 52 ~~~lg~~m~e~l~ke-kV~~GDVI~Id~~tG~v~rlGR 88 (224)
.+.+++..+++|.+. .-..||.|+||-++|.|+.-|+
T Consensus 115 pi~~~~~~~~~l~~~~~~~~g~~i~VDl~~~~i~~~g~ 152 (171)
T 3h5j_A 115 AAEVAQDDVELLWKLIEQSPGLEITANLQDRIITAATV 152 (171)
T ss_dssp EEECCHHHHHHHHHHHHHSTTCEEEEETTTTEEEETTE
T ss_pred eEEeCHHHHHHHHHHhhcCCCcEEEEECCCCEEEECCE
Confidence 456677777776442 2267999999999999986443
Done!