RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy654
(224 letters)
>d2cqaa1 b.40.4.14 (A:8-89) RuvB-like 2 protein, RUVBL2 (TIP49b)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 82
Score = 123 bits (310), Expect = 2e-37
Identities = 69/81 (85%), Positives = 77/81 (95%)
Query: 14 EETEMIEGEVVEIQIERPATGLGSKVGKLTMKTTEMETSYDLGAKMIEAIGKEKVQAGDV 73
EETE+IEGEVVEIQI+RPATG GSKVGKLT+KTTEMET YDLG KMIE++ K+KVQAGDV
Sbjct: 2 EETEIIEGEVVEIQIDRPATGTGSKVGKLTLKTTEMETIYDLGTKMIESLTKDKVQAGDV 61
Query: 74 ITIDKATGKITRLGRSFTRAR 94
ITIDKATGKI++LGRSFTRAR
Sbjct: 62 ITIDKATGKISKLGRSFTRAR 82
Score = 50.5 bits (121), Expect = 2e-09
Identities = 25/27 (92%), Positives = 27/27 (100%)
Query: 159 VQAGDVITIDKATGKITRLGRSFTRAR 185
VQAGDVITIDKATGKI++LGRSFTRAR
Sbjct: 56 VQAGDVITIDKATGKISKLGRSFTRAR 82
>d1vbga2 c.8.1.1 (A:383-517) Pyruvate phosphate dikinase, central
domain {Maize (Zea mays) [TaxId: 4577]}
Length = 135
Score = 28.1 bits (62), Expect = 0.51
Identities = 9/42 (21%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 133 CPVVPRPESSRSEDSGSTVTLHEIVDVQAGDVITIDKATGKI 174
V R D+ VT+ V ++ G+ ++++ +TG++
Sbjct: 86 KCCVSGCSGIRVNDAEKLVTIGGHV-LREGEWLSLNGSTGEV 126
Score = 25.4 bits (55), Expect = 4.6
Identities = 6/27 (22%), Positives = 18/27 (66%)
Query: 57 AKMIEAIGKEKVQAGDVITIDKATGKI 83
A+ + IG ++ G+ ++++ +TG++
Sbjct: 100 AEKLVTIGGHVLREGEWLSLNGSTGEV 126
>d1kbla2 c.8.1.1 (A:377-509) Pyruvate phosphate dikinase, central
domain {Clostridium symbiosum [TaxId: 1512]}
Length = 133
Score = 26.9 bits (59), Expect = 1.2
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 63 IGKEKVQAGDVITIDKATGKI 83
+G GD I++D +TGKI
Sbjct: 109 LGGHTFAEGDYISLDGSTGKI 129
Score = 24.6 bits (53), Expect = 6.6
Identities = 11/41 (26%), Positives = 16/41 (39%), Gaps = 1/41 (2%)
Query: 134 PVVPRPESSRSEDSGSTVTLHEIVDVQAGDVITIDKATGKI 174
V + + T L GD I++D +TGKI
Sbjct: 90 CCVSGCGEIKINEEAKTFELGGHT-FAEGDYISLDGSTGKI 129
>d1h6za2 c.8.1.1 (A:406-537) Pyruvate phosphate dikinase, central
domain {Trypanosoma brucei [TaxId: 5691]}
Length = 132
Score = 26.5 bits (58), Expect = 1.8
Identities = 8/21 (38%), Positives = 11/21 (52%)
Query: 63 IGKEKVQAGDVITIDKATGKI 83
+ + GD ITID + G I
Sbjct: 105 LNGSVFREGDYITIDGSKGLI 125
Score = 24.2 bits (52), Expect = 8.9
Identities = 8/16 (50%), Positives = 10/16 (62%)
Query: 159 VQAGDVITIDKATGKI 174
+ GD ITID + G I
Sbjct: 110 FREGDYITIDGSKGLI 125
>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus
influenzae [TaxId: 727]}
Length = 158
Score = 26.6 bits (58), Expect = 1.9
Identities = 9/62 (14%), Positives = 17/62 (27%), Gaps = 2/62 (3%)
Query: 54 DLGAKMIEAIGKEKVQAGDVITI--DKATGKITRLGRSFTRARDYDATGAQTRNTLPSRS 111
G K E + K + ++ + D GK T + T + +
Sbjct: 16 RFGKKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGIGHQGNVKSPTYTLVEEYN 75
Query: 112 RH 113
Sbjct: 76 IA 77
>d1v7la_ c.8.2.1 (A:) Isopropylmalate isomerase LeuD {Pyrococcus
horikoshii [TaxId: 53953]}
Length = 162
Score = 26.4 bits (58), Expect = 2.3
Identities = 9/52 (17%), Positives = 23/52 (44%)
Query: 131 IICPVVPRPESSRSEDSGSTVTLHEIVDVQAGDVITIDKATGKITRLGRSFT 182
+I R + + G + L + ++ GD++T++ TG++ +
Sbjct: 82 VIAESFGRIFYRNAINIGIPLLLGKTEGLKDGDLVTVNWETGEVRKGDEILM 133
Score = 26.0 bits (57), Expect = 2.5
Identities = 6/26 (23%), Positives = 15/26 (57%)
Query: 66 EKVQAGDVITIDKATGKITRLGRSFT 91
E ++ GD++T++ TG++ +
Sbjct: 108 EGLKDGDLVTVNWETGEVRKGDEILM 133
>d1zyma2 c.8.1.2 (A:3-21,A:145-249) N-terminal domain of enzyme I of
the PEP:sugar phosphotransferase system {Escherichia
coli [TaxId: 562]}
Length = 124
Score = 25.8 bits (56), Expect = 3.1
Identities = 11/69 (15%), Positives = 23/69 (33%)
Query: 16 TEMIEGEVVEIQIERPATGLGSKVGKLTMKTTEMETSYDLGAKMIEAIGKEKVQAGDVIT 75
+ + G + G T T+ M S +L A + +V+ D +
Sbjct: 35 AADLTPSETAQLNLKKVLGFITDAGGRTSHTSIMARSLELPAIVGTGSVTSQVKNDDYLI 94
Query: 76 IDKATGKIT 84
+D ++
Sbjct: 95 LDAVNNQVY 103
>d2f9ha1 b.161.1.1 (A:3-123) PTS system, IIa component (PTSIIA)
{Enterococcus faecalis [TaxId: 1351]}
Length = 121
Score = 25.5 bits (56), Expect = 3.7
Identities = 6/28 (21%), Positives = 11/28 (39%)
Query: 60 IEAIGKEKVQAGDVITIDKATGKITRLG 87
+ + GD + I IT++G
Sbjct: 42 FPEKDQVTLAEGDHLKIGDTNYTITKVG 69
Score = 25.1 bits (55), Expect = 4.0
Identities = 7/22 (31%), Positives = 11/22 (50%)
Query: 157 VDVQAGDVITIDKATGKITRLG 178
V + GD + I IT++G
Sbjct: 48 VTLAEGDHLKIGDTNYTITKVG 69
>d2vv5a1 b.38.1.3 (A:113-179) Mechanosensitive channel protein
MscS (YggB), middle domain {Escherichia coli [TaxId:
562]}
Length = 67
Score = 24.3 bits (53), Expect = 3.8
Identities = 5/27 (18%), Positives = 10/27 (37%)
Query: 71 GDVITIDKATGKITRLGRSFTRARDYD 97
G+ + + G + + T R D
Sbjct: 21 GEYVDLGGVAGTVLSVQIFSTTMRTAD 47
Score = 24.3 bits (53), Expect = 3.8
Identities = 5/27 (18%), Positives = 10/27 (37%)
Query: 162 GDVITIDKATGKITRLGRSFTRARDYD 188
G+ + + G + + T R D
Sbjct: 21 GEYVDLGGVAGTVLSVQIFSTTMRTAD 47
>d2zjro1 b.155.1.1 (O:5-98) Ribosomal protein L21p {Deinococcus
radiodurans [TaxId: 1299]}
Length = 94
Score = 24.8 bits (54), Expect = 4.9
Identities = 9/24 (37%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
Query: 60 IEAIGK-EKVQAGDVITIDKATGK 82
I+ GK +V GDVI ++ G+
Sbjct: 1 IQTGGKQYRVSEGDVIRVESLQGE 24
>d2grea1 b.49.3.1 (A:74-186) Deblocking aminopeptidase YhfE
{Bacillus cereus [TaxId: 1396]}
Length = 113
Score = 24.4 bits (53), Expect = 6.3
Identities = 13/78 (16%), Positives = 29/78 (37%), Gaps = 3/78 (3%)
Query: 20 EGEVVE--IQIERPATGLGSKVGKLTMKTTEMETSYDLGAKMIEAIGKEKVQAGDVITID 77
G+ I + + + + G+ +E D + + + ++ GD ++ D
Sbjct: 37 SGKTYTGTILMHQTSVHVYKDAGEAKRDEKNIEVRIDERVFSADEVRELGIEVGDFVSFD 96
Query: 78 KATGKITRLGRSFTRARD 95
+IT G +R D
Sbjct: 97 PRV-QITESGYIKSRHLD 113
>d1mi8a_ b.86.1.2 (A:) DnaB intein {Synechocystis sp. pcc 6803
[TaxId: 1148]}
Length = 158
Score = 24.4 bits (52), Expect = 10.0
Identities = 6/31 (19%), Positives = 18/31 (58%)
Query: 146 DSGSTVTLHEIVDVQAGDVITIDKATGKITR 176
+G V++ +++D + ++ I++ T K+
Sbjct: 14 STGKRVSIKDLLDEKDFEIWAINEQTMKLES 44
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.313 0.128 0.353
Gapped
Lambda K H
0.267 0.0639 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 748,165
Number of extensions: 32070
Number of successful extensions: 126
Number of sequences better than 10.0: 1
Number of HSP's gapped: 126
Number of HSP's successfully gapped: 28
Length of query: 224
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 142
Effective length of database: 1,281,736
Effective search space: 182006512
Effective search space used: 182006512
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 51 (23.6 bits)