Query psy6545
Match_columns 59
No_of_seqs 25 out of 27
Neff 2.0
Searched_HMMs 46136
Date Fri Aug 16 20:45:39 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6545.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/6545hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3582|consensus 99.9 4.5E-28 9.7E-33 196.4 2.0 43 3-45 98-140 (856)
2 PF08550 DUF1752: Fungal prote 92.5 0.022 4.9E-07 29.7 -0.8 27 11-37 2-28 (29)
3 COG1696 DltB Predicted membran 47.7 7.9 0.00017 30.2 0.6 13 29-41 274-286 (425)
4 PF10494 Stk19: Serine-threoni 35.2 14 0.00031 26.4 0.3 20 2-21 207-226 (250)
5 PHA01474 nonstructural protein 31.7 28 0.0006 20.9 1.1 19 6-25 26-44 (52)
6 PF03937 Sdh5: Flavinator of s 21.5 27 0.00058 20.5 -0.3 12 26-37 1-12 (74)
7 cd00672 CysRS_core catalytic c 20.1 35 0.00075 23.4 0.0 21 34-54 112-139 (213)
8 PF06006 DUF905: Bacterial pro 18.0 27 0.00059 21.9 -0.8 11 29-39 43-53 (70)
9 PF12550 GCR1_C: Transcription 17.3 48 0.001 19.5 0.2 18 29-47 12-29 (81)
10 KOG0893|consensus 16.1 50 0.0011 22.2 0.1 11 23-33 63-73 (125)
No 1
>KOG3582|consensus
Probab=99.94 E-value=4.5e-28 Score=196.39 Aligned_cols=43 Identities=67% Similarity=1.279 Sum_probs=41.6
Q ss_pred CCCccCCCCCCCCcceEEeeccceechhhhhhhhhhhhccCce
Q psy6545 3 PQKLTSPKWNRFKGIRLRWKDKIRLNNVIWRCWYMQSIKVETH 45 (59)
Q Consensus 3 s~KL~SPKWK~Fkglkl~wkdkIRLNN~IWRaWhiQfvk~~~~ 45 (59)
||||||||||||||+||+|||||||||+|||||||||+|||+.
T Consensus 98 s~KltsPKWk~FKGlrL~wkdkiRLNNvIWRawyiqf~kkrk~ 140 (856)
T KOG3582|consen 98 SGKLTSPKWKNFKGLRLLWKDKIRLNNVIWRAWYIQFVKKRKS 140 (856)
T ss_pred ccccCCcccccccceeeeehhhhhhhhHHHHHHHHHHHHhccC
Confidence 7999999999999999999999999999999999999999874
No 2
>PF08550 DUF1752: Fungal protein of unknown function (DUF1752); InterPro: IPR013860 This entry represents fungal proteins of unknown function. This short section domain is bounded by two highly conserved tryptophans. The entry contains P34072 from SWISSPROT that is thought to be a negative regulator of RAS-cAMP pathway in S. cerevisiae and the S. pombe member is a GAF1 transcription factor Q10280 from SWISSPROT that is also associated with the zinc finger family GATA PF00320 from PFAM.
Probab=92.51 E-value=0.022 Score=29.65 Aligned_cols=27 Identities=26% Similarity=0.668 Sum_probs=21.0
Q ss_pred CCCCCcceEEeeccceechhhhhhhhh
Q psy6545 11 WNRFKGIRLRWKDKIRLNNVIWRCWYM 37 (59)
Q Consensus 11 WK~Fkglkl~wkdkIRLNN~IWRaWhi 37 (59)
|+-|-.-+-.-.+.-||.|+-||-|+.
T Consensus 2 Wk~~~~~k~~l~~~~RLeN~sWR~w~~ 28 (29)
T PF08550_consen 2 WKMYTKCKDSLPNGERLENLSWRLWNK 28 (29)
T ss_pred hhHHhhhhhhcCcchhHHHHHHHHHhc
Confidence 555555555667889999999999975
No 3
>COG1696 DltB Predicted membrane protein involved in D-alanine export [Cell envelope biogenesis, outer membrane]
Probab=47.65 E-value=7.9 Score=30.17 Aligned_cols=13 Identities=31% Similarity=0.726 Sum_probs=10.2
Q ss_pred hhhhhhhhhhhhc
Q psy6545 29 NVIWRCWYMQSIK 41 (59)
Q Consensus 29 N~IWRaWhiQfvk 41 (59)
++-||.|||-+-.
T Consensus 274 ~~FWrRWHmSLS~ 286 (425)
T COG1696 274 KDFWRRWHMSLST 286 (425)
T ss_pred HHHHHHHHhhHHH
Confidence 5689999997643
No 4
>PF10494 Stk19: Serine-threonine protein kinase 19; InterPro: IPR018865 This serine-threonine protein kinase number 19 is expressed from the MHC and predominantly in the nucleus. Protein kinases are involved in signal transduction pathways and play fundamental roles in the regulation of cell functions. This is a novel Ser/Thr protein kinase, that has Mn2+-dependent protein kinase activity that phosphorylates alpha -casein at Ser/Thr residues and histone at Ser residues. It can be covalently modified by the reactive ATP analogue 5'-p-fluorosulphonylbenzoyladenosine in the absence of ATP, and this modification is prevented in the presence of 1 mM ATP, indicating that the kinase domain of is capable of binding ATP [].
Probab=35.18 E-value=14 Score=26.36 Aligned_cols=20 Identities=30% Similarity=0.775 Sum_probs=15.6
Q ss_pred CCCCccCCCCCCCCcceEEe
Q psy6545 2 GPQKLTSPKWNRFKGIRLRW 21 (59)
Q Consensus 2 gs~KL~SPKWK~Fkglkl~w 21 (59)
+.++.-+.|||+|-|+.+.|
T Consensus 207 ~~~~~~~~k~k~~~gl~~~w 226 (250)
T PF10494_consen 207 DDSPGRTRKWKPFYGLGFRW 226 (250)
T ss_pred cccchhhcccccccCcChhh
Confidence 34466788999999998854
No 5
>PHA01474 nonstructural protein
Probab=31.74 E-value=28 Score=20.86 Aligned_cols=19 Identities=37% Similarity=1.139 Sum_probs=14.8
Q ss_pred ccCCCCCCCCcceEEeeccc
Q psy6545 6 LTSPKWNRFKGIRLRWKDKI 25 (59)
Q Consensus 6 L~SPKWK~Fkglkl~wkdkI 25 (59)
+.|| |+.|+..++.|+...
T Consensus 26 ilsp-wnsfrsfriswrtet 44 (52)
T PHA01474 26 ILSP-WNSFRSFRISWRTET 44 (52)
T ss_pred eeCc-cccceeEEEEEeecc
Confidence 3444 999999999997543
No 6
>PF03937 Sdh5: Flavinator of succinate dehydrogenase; InterPro: IPR005631 This entry represents a group of uncharacterised small proteins found in both eukaryotes and prokaryotes, including NMA1147 from Neisseria meningitidis [] and YgfY from Escherichia coli []. YgfY may be involved in transcriptional regulation. The structure of these proteins consists of a complex bundle of five alpha-helices, which is composed of an up-down 3-helix bundle plus an orthogonal 2-helix bundle. ; PDB: 2LM4_A 1PUZ_A 2JR5_A 1X6I_A 1X6J_A.
Probab=21.47 E-value=27 Score=20.50 Aligned_cols=12 Identities=33% Similarity=0.734 Sum_probs=8.1
Q ss_pred eechhhhhhhhh
Q psy6545 26 RLNNVIWRCWYM 37 (59)
Q Consensus 26 RLNN~IWRaWhi 37 (59)
|.+..+|||||-
T Consensus 1 r~kRl~~r~~rR 12 (74)
T PF03937_consen 1 RRKRLRWRCKRR 12 (74)
T ss_dssp HHHHHHHHHSS-
T ss_pred CcHHHHHHhhcc
Confidence 455678999874
No 7
>cd00672 CysRS_core catalytic core domain of cysteinyl tRNA synthetase. Cysteinyl tRNA synthetase (CysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=20.10 E-value=35 Score=23.39 Aligned_cols=21 Identities=14% Similarity=0.300 Sum_probs=13.9
Q ss_pred hhhhhhhc-------cCceeeeeehhhh
Q psy6545 34 CWYMQSIK-------VETHYHVTSRELM 54 (59)
Q Consensus 34 aWhiQfvk-------~~~~~~~~~~~~~ 54 (59)
+|||||.- ..-.+|+...+|+
T Consensus 112 tWh~ec~am~~~~lg~~~dih~~G~Dl~ 139 (213)
T cd00672 112 VWHIECSAMAMKYLGETFDIHGGGVDLI 139 (213)
T ss_pred ehhHHHHHHHHHHcCCCccEEeecCCCC
Confidence 39999753 3356777776654
No 8
>PF06006 DUF905: Bacterial protein of unknown function (DUF905); InterPro: IPR009253 This family consists of several short hypothetical proteobacterial proteins of unknown function.; PDB: 2HJJ_A.
Probab=18.01 E-value=27 Score=21.91 Aligned_cols=11 Identities=27% Similarity=1.250 Sum_probs=7.7
Q ss_pred hhhhhhhhhhh
Q psy6545 29 NVIWRCWYMQS 39 (59)
Q Consensus 29 N~IWRaWhiQf 39 (59)
.-|||+|-.+.
T Consensus 43 ~mvWRaWNFEp 53 (70)
T PF06006_consen 43 QMVWRAWNFEP 53 (70)
T ss_dssp -EEEEEESSST
T ss_pred cEEEEeeccCC
Confidence 35899997654
No 9
>PF12550 GCR1_C: Transcriptional activator of glycolytic enzymes; InterPro: IPR022210 This domain family is found in eukaryotes, and is approximately 80 amino acids in length. This family is activates the transcription of glycolytic enzymes.
Probab=17.33 E-value=48 Score=19.47 Aligned_cols=18 Identities=17% Similarity=0.628 Sum_probs=12.5
Q ss_pred hhhhhhhhhhhhccCceee
Q psy6545 29 NVIWRCWYMQSIKVETHYH 47 (59)
Q Consensus 29 N~IWRaWhiQfvk~~~~~~ 47 (59)
..||+.|+.- ..++|+|+
T Consensus 12 ~dlw~Ew~~g-~~g~psI~ 29 (81)
T PF12550_consen 12 YDLWREWFTG-LNGQPSIR 29 (81)
T ss_pred HHHHHHHhcC-CCCCCCHH
Confidence 4689999976 45566554
No 10
>KOG0893|consensus
Probab=16.14 E-value=50 Score=22.15 Aligned_cols=11 Identities=36% Similarity=0.851 Sum_probs=8.7
Q ss_pred ccceechhhhh
Q psy6545 23 DKIRLNNVIWR 33 (59)
Q Consensus 23 dkIRLNN~IWR 33 (59)
.-.|||++||-
T Consensus 63 ~Dt~lnkavwa 73 (125)
T KOG0893|consen 63 VDTRLNKAVWE 73 (125)
T ss_pred ecchhhHHHHH
Confidence 34699999995
Done!