Query psy6545
Match_columns 59
No_of_seqs 25 out of 27
Neff 2.0
Searched_HMMs 29240
Date Fri Aug 16 20:45:54 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6545.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6545hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gnt_B Carbohydrate-responsive 99.6 7.7E-17 2.6E-21 84.9 -0.1 23 22-44 1-23 (26)
2 3lrv_A PRE-mRNA-splicing facto 39.1 13 0.00045 23.0 1.4 23 1-23 4-26 (343)
3 2ct5_A Zinc finger BED domain 16.7 66 0.0023 18.5 1.5 16 3-18 3-18 (73)
4 2hjj_A Hypothetical protein YK 13.8 26 0.00089 21.9 -0.8 13 28-40 46-58 (87)
5 1vq8_X 50S ribosomal protein L 13.7 32 0.0011 21.0 -0.4 8 26-33 54-61 (92)
6 3j21_a 50S ribosomal protein L 12.6 37 0.0013 20.9 -0.3 9 25-33 52-60 (95)
7 2igr_A Anticancer peptide CB1A 12.2 13 0.00044 19.9 -2.2 10 8-17 22-31 (34)
8 4a17_W RPL31, 60S ribosomal pr 11.3 44 0.0015 21.1 -0.3 9 25-33 52-60 (111)
9 2djr_A Zinc finger BED domain- 11.3 59 0.002 18.9 0.3 13 3-15 3-15 (76)
10 3cp0_A Membrane protein implic 10.5 62 0.0021 17.8 0.1 30 23-52 40-72 (82)
No 1
>4gnt_B Carbohydrate-responsive element-binding protein; protein-protein complex, alpha-alpha helical, protein-protei interaction, 14-3-3; 2.41A {Mus musculus}
Probab=99.59 E-value=7.7e-17 Score=84.94 Aligned_cols=23 Identities=57% Similarity=1.146 Sum_probs=20.0
Q ss_pred eccceechhhhhhhhhhhhccCc
Q psy6545 22 KDKIRLNNVIWRCWYMQSIKVET 44 (59)
Q Consensus 22 kdkIRLNN~IWRaWhiQfvk~~~ 44 (59)
+|||||||+|||+|||||+++..
T Consensus 1 rdkirlnnaiwrawyiqyve~~~ 23 (26)
T 4gnt_B 1 RDKIRLNNAIWRAWYIQYVQRXX 23 (26)
T ss_dssp CHHHHHHHHHHHHHHHHHTTC--
T ss_pred CcchhhhhHHHHHHHHHHHHHhc
Confidence 58999999999999999999764
No 2
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=39.07 E-value=13 Score=22.96 Aligned_cols=23 Identities=35% Similarity=0.601 Sum_probs=13.2
Q ss_pred CCCCCccCCCCCCCCcceEEeec
Q psy6545 1 MGPQKLTSPKWNRFKGIRLRWKD 23 (59)
Q Consensus 1 ~gs~KL~SPKWK~Fkglkl~wkd 23 (59)
|..+|+.+|+|.-++.+++.-.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~ 26 (343)
T 3lrv_A 4 MARGKLKAPKWPILKNLELLQAQ 26 (343)
T ss_dssp -------CCCCCCCCEEEEEEEE
T ss_pred cccccccCCCCchhhcceeEEEE
Confidence 45689999999999988877543
No 3
>2ct5_A Zinc finger BED domain containing protein 1; DREF homolog, putative C-like transposable element, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.6
Probab=16.65 E-value=66 Score=18.48 Aligned_cols=16 Identities=19% Similarity=0.129 Sum_probs=13.2
Q ss_pred CCCccCCCCCCCCcce
Q psy6545 3 PQKLTSPKWNRFKGIR 18 (59)
Q Consensus 3 s~KL~SPKWK~Fkglk 18 (59)
||...|+-|+.|.-..
T Consensus 3 ~~~~~S~VW~~F~k~~ 18 (73)
T 2ct5_A 3 SGSSGSKVWKYFGFDT 18 (73)
T ss_dssp SSCSCCCTTSSSCCCC
T ss_pred CCCccChHHHhCCccc
Confidence 6788999999998653
No 4
>2hjj_A Hypothetical protein YKFF; northeast structural genomics consortium (NESG), PROT structure initiative., PSI-2, structural genomics, unknown; NMR {Escherichia coli} SCOP: d.50.3.3
Probab=13.77 E-value=26 Score=21.93 Aligned_cols=13 Identities=23% Similarity=0.961 Sum_probs=9.4
Q ss_pred chhhhhhhhhhhh
Q psy6545 28 NNVIWRCWYMQSI 40 (59)
Q Consensus 28 NN~IWRaWhiQfv 40 (59)
..-|||||-.+..
T Consensus 46 g~mvWR~wnFEpd 58 (87)
T 2hjj_A 46 GRMVWRAWNFEPD 58 (87)
T ss_dssp CCEEEEEESSSTT
T ss_pred CcEEEEeeccCCc
Confidence 4569999976543
No 5
>1vq8_X 50S ribosomal protein L31E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.29.1.1 PDB: 1vq4_X* 1vq5_X* 1vq6_X* 1vq7_X* 1s72_X* 1vq9_X* 1vqk_X* 1vql_X* 1vqm_X* 1vqn_X* 1vqo_X* 1vqp_X* 1yhq_X* 1yi2_X* 1yij_X* 1yit_X* 1yj9_X* 1yjn_X* 1yjw_X* 2otj_X* ...
Probab=13.68 E-value=32 Score=21.00 Aligned_cols=8 Identities=25% Similarity=0.841 Sum_probs=6.6
Q ss_pred eechhhhh
Q psy6545 26 RLNNVIWR 33 (59)
Q Consensus 26 RLNN~IWR 33 (59)
|||.+||-
T Consensus 54 ~LNk~iW~ 61 (92)
T 1vq8_X 54 SINEAAWA 61 (92)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHHh
Confidence 68999995
No 6
>3j21_a 50S ribosomal protein L31E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=12.60 E-value=37 Score=20.94 Aligned_cols=9 Identities=33% Similarity=0.870 Sum_probs=7.2
Q ss_pred ceechhhhh
Q psy6545 25 IRLNNVIWR 33 (59)
Q Consensus 25 IRLNN~IWR 33 (59)
-|||.+||-
T Consensus 52 ~~LNk~vWa 60 (95)
T 3j21_a 52 PKVNEKIWE 60 (95)
T ss_dssp HHHHHHHHT
T ss_pred hHHHHHHHh
Confidence 478999994
No 7
>2igr_A Anticancer peptide CB1A; cecropin, antimicrobial peptide, ploycat peptide, cecropin fingerprint sequence, de novo protein; NMR {Hyalophora cecropia}
Probab=12.19 E-value=13 Score=19.90 Aligned_cols=10 Identities=60% Similarity=1.242 Sum_probs=7.3
Q ss_pred CCCCCCCCcc
Q psy6545 8 SPKWNRFKGI 17 (59)
Q Consensus 8 SPKWK~Fkgl 17 (59)
.||||-|+-+
T Consensus 22 gpkwkvfkki 31 (34)
T 2igr_A 22 GPKWKVFKKI 31 (34)
T ss_dssp CCHHHHHHHH
T ss_pred CcchHHHHHh
Confidence 5889888643
No 8
>4a17_W RPL31, 60S ribosomal protein L31; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_W 4a1c_W 4a1e_W
Probab=11.29 E-value=44 Score=21.14 Aligned_cols=9 Identities=44% Similarity=0.981 Sum_probs=7.3
Q ss_pred ceechhhhh
Q psy6545 25 IRLNNVIWR 33 (59)
Q Consensus 25 IRLNN~IWR 33 (59)
-|||.+||-
T Consensus 52 ~~LNk~vWa 60 (111)
T 4a17_W 52 TELNKFIWS 60 (111)
T ss_dssp HHHHHHHHT
T ss_pred cHHHHHHHh
Confidence 478999994
No 9
>2djr_A Zinc finger BED domain-containing protein 2; C2H2 type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=11.26 E-value=59 Score=18.90 Aligned_cols=13 Identities=23% Similarity=0.475 Sum_probs=11.3
Q ss_pred CCCccCCCCCCCC
Q psy6545 3 PQKLTSPKWNRFK 15 (59)
Q Consensus 3 s~KL~SPKWK~Fk 15 (59)
+++.+|.-|+.|.
T Consensus 3 ~~~~~S~VW~~F~ 15 (76)
T 2djr_A 3 SGSSGSEAWEYFH 15 (76)
T ss_dssp SSSCCGGGGGGEE
T ss_pred CCCccChHHhccc
Confidence 5788999999997
No 10
>3cp0_A Membrane protein implicated in regulation of MEMB protease activity; beta barrel, structural genomics, PSI-2; 1.65A {Corynebacterium glutamicum atcc 13032}
Probab=10.51 E-value=62 Score=17.75 Aligned_cols=30 Identities=20% Similarity=0.378 Sum_probs=22.1
Q ss_pred ccceechhhhhhhhh---hhhccCceeeeeehh
Q psy6545 23 DKIRLNNVIWRCWYM---QSIKVETHYHVTSRE 52 (59)
Q Consensus 23 dkIRLNN~IWRaWhi---Qfvk~~~~~~~~~~~ 52 (59)
-+|+++...|+|--. ++++.-..+-|+..|
T Consensus 40 G~V~~~G~~W~A~s~~~~~~i~~G~~V~Vv~v~ 72 (82)
T 3cp0_A 40 GQVRLDGSIWSARSMDPTHTFAEGEIVSVIDIQ 72 (82)
T ss_dssp CEEEETTEEEEEEESSTTCCBCTTCEEEEEEEE
T ss_pred EEEEECCEEEEEEECCCCCccCCCCEEEEEEEE
Confidence 569999999999754 566666667676654
Done!