Query psy6545
Match_columns 59
No_of_seqs 25 out of 27
Neff 2.0
Searched_HMMs 13730
Date Fri Aug 16 20:45:59 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6545.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/6545hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1gcca_ d.10.1.2 (A:) GCC-box 22.8 23 0.0017 18.5 1.9 16 12-27 1-20 (63)
2 d1duvg2 c.78.1.1 (G:151-333) O 18.5 23 0.0017 20.4 1.3 22 12-35 1-22 (183)
3 d2hjja1 d.50.3.3 (A:10-75) Hyp 14.8 11 0.00079 21.2 -0.8 10 29-38 38-47 (66)
4 d2exda1 b.40.12.1 (A:72-143) H 14.1 21 0.0015 18.9 0.3 30 23-52 31-60 (72)
5 d1nzia1 b.23.1.1 (A:1-117) Com 13.4 29 0.0021 17.7 0.8 19 3-21 5-23 (117)
6 d1dxha2 c.78.1.1 (A:151-335) O 12.9 34 0.0025 19.9 1.1 24 12-37 1-24 (185)
7 d1r4qa_ d.165.1.2 (A:) Shiga t 12.6 19 0.0014 23.7 -0.2 15 24-38 269-283 (289)
8 d1y6kr2 b.1.2.1 (R:101-206) In 12.5 19 0.0014 21.7 -0.2 10 24-33 89-98 (106)
9 d2at2a2 c.78.1.1 (A:145-295) A 10.2 60 0.0044 18.4 1.6 18 14-31 1-18 (151)
10 d1vqox1 d.29.1.1 (X:7-88) Ribo 9.4 25 0.0018 19.6 -0.4 8 26-33 47-54 (82)
No 1
>d1gcca_ d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=22.82 E-value=23 Score=18.51 Aligned_cols=16 Identities=31% Similarity=0.740 Sum_probs=10.5
Q ss_pred CCCCcceEE----eecccee
Q psy6545 12 NRFKGIRLR----WKDKIRL 27 (59)
Q Consensus 12 K~Fkglkl~----wkdkIRL 27 (59)
++|+|++.. |.-.||.
T Consensus 1 ~~yrGVr~r~~gkw~A~Ir~ 20 (63)
T d1gcca_ 1 KHYRGVRQRPWGKFAAEIRD 20 (63)
T ss_dssp CCCTTEEEETTTEEEEEEEE
T ss_pred CCcceEeECCCCCEEEEEec
Confidence 578998763 5555554
No 2
>d1duvg2 c.78.1.1 (G:151-333) Ornithine transcarbamoylase {Escherichia coli [TaxId: 562]}
Probab=18.50 E-value=23 Score=20.43 Aligned_cols=22 Identities=23% Similarity=0.383 Sum_probs=16.3
Q ss_pred CCCCcceEEeeccceechhhhhhh
Q psy6545 12 NRFKGIRLRWKDKIRLNNVIWRCW 35 (59)
Q Consensus 12 K~Fkglkl~wkdkIRLNN~IWRaW 35 (59)
|.|++|++.|=--+| || +=++|
T Consensus 1 k~~~~l~i~~vGD~~-nn-v~~Sl 22 (183)
T d1duvg2 1 KAFNEMTLVYAGDAR-NN-MGNSM 22 (183)
T ss_dssp CCGGGCEEEEESCTT-SH-HHHHH
T ss_pred CCcCCCEEEEEcCCc-cH-HHHHH
Confidence 689999999987765 65 44555
No 3
>d2hjja1 d.50.3.3 (A:10-75) Hypothetical protein YkfF {Escherichia coli [TaxId: 562]}
Probab=14.77 E-value=11 Score=21.22 Aligned_cols=10 Identities=30% Similarity=1.348 Sum_probs=7.7
Q ss_pred hhhhhhhhhh
Q psy6545 29 NVIWRCWYMQ 38 (59)
Q Consensus 29 N~IWRaWhiQ 38 (59)
.-+||||-.+
T Consensus 38 ~mvWR~wNfE 47 (66)
T d2hjja1 38 RMVWRAWNFE 47 (66)
T ss_dssp CEEEEEESSS
T ss_pred cEEEEEeccC
Confidence 4699999654
No 4
>d2exda1 b.40.12.1 (A:72-143) Hypothetical protein PH0471 {Pyrococcus horikoshii [TaxId: 53953]}
Probab=14.11 E-value=21 Score=18.89 Aligned_cols=30 Identities=7% Similarity=0.187 Sum_probs=24.0
Q ss_pred ccceechhhhhhhhhhhhccCceeeeeehh
Q psy6545 23 DKIRLNNVIWRCWYMQSIKVETHYHVTSRE 52 (59)
Q Consensus 23 dkIRLNN~IWRaWhiQfvk~~~~~~~~~~~ 52 (59)
-+|+++..+|+|.=-+.++.-..+-|++.+
T Consensus 31 G~V~v~Ge~W~A~s~~~i~~G~~V~Vv~~~ 60 (72)
T d2exda1 31 YLVEVEGDKWIAYSDEKLSLGDRVMVVDVD 60 (72)
T ss_dssp EEEEETTEEEEECCSSCCCTTCEEEEEEEC
T ss_pred EEEEECCEEEEEEeCCccCCCCEEEEEEeE
Confidence 579999999999877777777777777654
No 5
>d1nzia1 b.23.1.1 (A:1-117) Complement C1S component {Human (Homo sapiens) [TaxId: 9606]}
Probab=13.38 E-value=29 Score=17.65 Aligned_cols=19 Identities=11% Similarity=0.093 Sum_probs=12.8
Q ss_pred CCCccCCCCCCCCcceEEe
Q psy6545 3 PQKLTSPKWNRFKGIRLRW 21 (59)
Q Consensus 3 s~KL~SPKWK~Fkglkl~w 21 (59)
.|.++||-+-+.=.-.+.|
T Consensus 5 ~G~i~SP~yP~~Yp~~~~C 23 (117)
T d1nzia1 5 YGEILSPNYPQAYPSEVEK 23 (117)
T ss_dssp EEEEECTTTTSCCCSSEEE
T ss_pred EEEEeCCCCCCCCCCCCcE
Confidence 3778999887764444555
No 6
>d1dxha2 c.78.1.1 (A:151-335) Ornithine transcarbamoylase {Pseudomonas aeruginosa [TaxId: 287]}
Probab=12.93 E-value=34 Score=19.87 Aligned_cols=24 Identities=17% Similarity=0.292 Sum_probs=16.7
Q ss_pred CCCCcceEEeeccceechhhhhhhhh
Q psy6545 12 NRFKGIRLRWKDKIRLNNVIWRCWYM 37 (59)
Q Consensus 12 K~Fkglkl~wkdkIRLNN~IWRaWhi 37 (59)
|+|+|+++.|=--++ || +=++|-.
T Consensus 1 k~l~~lkia~vGD~~-nn-V~~Sli~ 24 (185)
T d1dxha2 1 KPLHDISYAYLGDAR-NN-MGNSLLL 24 (185)
T ss_dssp SCGGGCEEEEESCCS-SH-HHHHHHH
T ss_pred CCCCCCEEEEEcCCc-ch-HHHHHHH
Confidence 689999999977652 65 4555543
No 7
>d1r4qa_ d.165.1.2 (A:) Shiga toxin, A-chain {Shigella dysenteriae, toxin I [TaxId: 622]}
Probab=12.58 E-value=19 Score=23.75 Aligned_cols=15 Identities=20% Similarity=0.487 Sum_probs=12.2
Q ss_pred cceechhhhhhhhhh
Q psy6545 24 KIRLNNVIWRCWYMQ 38 (59)
Q Consensus 24 kIRLNN~IWRaWhiQ 38 (59)
.|.+||++|-.|-+-
T Consensus 269 ~~~~~~~~~~~~~~~ 283 (289)
T d1r4qa_ 269 GITHNKILWDSSTLG 283 (289)
T ss_dssp EEEETTEEEEHHHHH
T ss_pred eEEecceeeeccchh
Confidence 489999999998653
No 8
>d1y6kr2 b.1.2.1 (R:101-206) Interleukin-10 receptor 1, IL-10R1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=12.55 E-value=19 Score=21.66 Aligned_cols=10 Identities=30% Similarity=0.607 Sum_probs=8.1
Q ss_pred cceechhhhh
Q psy6545 24 KIRLNNVIWR 33 (59)
Q Consensus 24 kIRLNN~IWR 33 (59)
.=|+|+++|-
T Consensus 89 ~SR~N~g~wS 98 (106)
T d1y6kr2 89 ASRSNKGMWS 98 (106)
T ss_dssp TTCCCCBCCC
T ss_pred ccccCccccC
Confidence 4589999995
No 9
>d2at2a2 c.78.1.1 (A:145-295) Aspartate carbamoyltransferase catalytic subunit {Bacillus subtilis [TaxId: 1423]}
Probab=10.24 E-value=60 Score=18.38 Aligned_cols=18 Identities=28% Similarity=0.538 Sum_probs=13.4
Q ss_pred CCcceEEeeccceechhh
Q psy6545 14 FKGIRLRWKDKIRLNNVI 31 (59)
Q Consensus 14 Fkglkl~wkdkIRLNN~I 31 (59)
|+|+++.|=--++=||++
T Consensus 1 F~gl~i~~vGD~~~srv~ 18 (151)
T d2at2a2 1 FKGLTVSIHGDIKHSRVA 18 (151)
T ss_pred CCCCEEEEEcCCCCCHHH
Confidence 788888887777666654
No 10
>d1vqox1 d.29.1.1 (X:7-88) Ribosomal protein L31e {Archaeon Haloarcula marismortui [TaxId: 2238]}
Probab=9.41 E-value=25 Score=19.64 Aligned_cols=8 Identities=25% Similarity=0.841 Sum_probs=6.4
Q ss_pred eechhhhh
Q psy6545 26 RLNNVIWR 33 (59)
Q Consensus 26 RLNN~IWR 33 (59)
+||.+||-
T Consensus 47 ~lN~~IWs 54 (82)
T d1vqox1 47 SINEAAWA 54 (82)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHHh
Confidence 57899995
Done!