RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy6545
         (59 letters)



>gnl|CDD|236062 PRK07583, PRK07583, cytosine deaminase-like protein; Validated.
          Length = 438

 Score = 26.9 bits (60), Expect = 0.43
 Identities = 10/29 (34%), Positives = 12/29 (41%), Gaps = 2/29 (6%)

Query: 2   GPQKLTSPKWNRFKGIRLRWKDKIRLNNV 30
            PQ   S  W  F  +R  W  +I L  V
Sbjct: 147 APQAAIS--WEVFAELREAWAGRIALQAV 173


>gnl|CDD|227376 COG5043, MRS6, Vacuolar protein sorting-associated protein
            [Intracellular trafficking and secretion].
          Length = 2552

 Score = 24.5 bits (53), Expect = 4.0
 Identities = 13/50 (26%), Positives = 18/50 (36%), Gaps = 2/50 (4%)

Query: 11   WNRFKGIRLRWKDKIRLNNVIWRCWYMQSIK--VETHYHVTSRELMGSQK 58
            +    GI LR+ D        W C ++Q     V   Y V       SQ+
Sbjct: 2017 YMTNVGIGLRFIDSKAYQTFSWECAWVQIDNQLVLGIYPVILYPTEISQE 2066


>gnl|CDD|224499 COG1583, COG1583, CRISPR system related protein, RAMP superfamily
           [Defense    mechanisms].
          Length = 240

 Score = 23.8 bits (52), Expect = 5.3
 Identities = 10/31 (32%), Positives = 15/31 (48%), Gaps = 1/31 (3%)

Query: 8   SPKWNRFKGIRLRWKDK-IRLNNVIWRCWYM 37
            P+ N F     + K K +R+ N+  R W M
Sbjct: 173 KPEDNDFDREVPKVKPKRVRVKNIYGRAWEM 203


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.324    0.134    0.463 

Gapped
Lambda     K      H
   0.267   0.0531    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 2,796,640
Number of extensions: 173120
Number of successful extensions: 178
Number of sequences better than 10.0: 1
Number of HSP's gapped: 177
Number of HSP's successfully gapped: 4
Length of query: 59
Length of database: 10,937,602
Length adjustment: 31
Effective length of query: 28
Effective length of database: 9,562,628
Effective search space: 267753584
Effective search space used: 267753584
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (24.7 bits)