RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy6545
         (59 letters)



>3tpa_A Heme-binding protein A; glutathione binding protein, SBP; 2.00A
           {Haemophilus parasuis 29755}
          Length = 521

 Score = 25.0 bits (55), Expect = 1.7
 Identities = 7/37 (18%), Positives = 12/37 (32%), Gaps = 7/37 (18%)

Query: 2   GPQKLTSPKWNRFKGIRLR-----WKDKIRLNNVIWR 33
           GP    +        +R       WK K  +  +I+ 
Sbjct: 190 GPFIFQT--NQTDHAVRYTANVDYWKGKADIERLIFS 224


>3m8u_A Heme-binding protein A; glutathione binding protein, ABC-type
           transport system, PERI component, transport protein;
           HET: GDS; 1.85A {Haemophilus parasuis}
          Length = 522

 Score = 24.6 bits (54), Expect = 2.3
 Identities = 7/37 (18%), Positives = 13/37 (35%), Gaps = 7/37 (18%)

Query: 2   GPQKLTSPKWNRFKGIRLR-----WKDKIRLNNVIWR 33
           GP       +   +  R       WK K  ++ +I+ 
Sbjct: 185 GPFLFAG--YQVDQKSRYLAHKEYWKGKADIDRLIFE 219


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.324    0.134    0.463 

Gapped
Lambda     K      H
   0.267   0.0721    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 898,702
Number of extensions: 35251
Number of successful extensions: 60
Number of sequences better than 10.0: 1
Number of HSP's gapped: 60
Number of HSP's successfully gapped: 2
Length of query: 59
Length of database: 6,701,793
Length adjustment: 30
Effective length of query: 29
Effective length of database: 5,864,163
Effective search space: 170060727
Effective search space used: 170060727
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (23.4 bits)