BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6546
(294 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2I13|A Chain A, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
pdb|2I13|B Chain B, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
Length = 190
Score = 110 bits (276), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 62/161 (38%), Positives = 88/161 (54%), Gaps = 5/161 (3%)
Query: 99 CPQCSRDFATVKILKTHLKTHEG-IIYPCPECDKTFLSTSGLREHRKVHAGVR-YICHAC 156
CP+C + F+ L H +TH G Y CPEC K+F L H++ H G + Y C C
Sbjct: 24 CPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKPYKCPEC 83
Query: 157 PREFSSEATMKAHVASHNGVQ-HACDQCDRTFSCMPYLRQHQKLHSG-ITYSCPSCSKSF 214
+ FS A ++AH +H G + +AC +C ++FS + +LR HQ+ H+G Y CP C KSF
Sbjct: 84 GKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSF 143
Query: 215 NRKDRYRMHLKLHQGVR-HTCKECSKEFSNEYNLKNHMVLH 254
+R+D H + H G + + C EC K FS L H H
Sbjct: 144 SREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQRTH 184
Score = 105 bits (263), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 61/161 (37%), Positives = 87/161 (54%), Gaps = 5/161 (3%)
Query: 124 YPCPECDKTFLSTSGLREHRKVHAGVR-YICHACPREFSSEATMKAHVASHNGVQ-HACD 181
Y CPEC K+F + L EH++ H G + Y C C + FS + + H +H G + + C
Sbjct: 22 YACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKPYKCP 81
Query: 182 QCDRTFSCMPYLRQHQKLHSG-ITYSCPSCSKSFNRKDRYRMHLKLHQGVR-HTCKECSK 239
+C ++FS LR HQ+ H+G Y+CP C KSF++ R H + H G + + C EC K
Sbjct: 82 ECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGK 141
Query: 240 EFSNEYNLKNHMVLH-DVRAYVCELCARQFTRVDHFNHHRR 279
FS E NL H H + Y C C + F+R D N H+R
Sbjct: 142 SFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQR 182
Score = 104 bits (259), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 64/179 (35%), Positives = 94/179 (52%), Gaps = 19/179 (10%)
Query: 60 YPCPECDKTFLSTLTGTPQGARGRAVYLS---RMSTTLTRHPCPQCSRDFATVKILKTHL 116
Y CPEC K+F R+ +L+ R T + CP+C + F+ K L H
Sbjct: 22 YACPECGKSF------------SRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQ 69
Query: 117 KTHEG-IIYPCPECDKTFLSTSGLREHRKVHAGVR-YICHACPREFSSEATMKAHVASHN 174
+TH G Y CPEC K+F + LR H++ H G + Y C C + FS A ++AH +H
Sbjct: 70 RTHTGEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHT 129
Query: 175 GVQ-HACDQCDRTFSCMPYLRQHQKLHSG-ITYSCPSCSKSFNRKDRYRMHLKLHQGVR 231
G + + C +C ++FS L HQ+ H+G Y CP C KSF+R+D +H + H G +
Sbjct: 130 GEKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQRTHTGKK 188
Score = 79.3 bits (194), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 51/144 (35%), Positives = 70/144 (48%), Gaps = 12/144 (8%)
Query: 35 CPQCSRDFATVKILKTHLKTHEG-IIYPCPECDKTFLSTLTGTPQGARGRAVYLSRMSTT 93
CP+C + F+ K L H +TH G Y CPEC K+F Q A RA R T
Sbjct: 52 CPECGKSFSDKKDLTRHQRTHTGEKPYKCPECGKSFS-------QRANLRA--HQRTHTG 102
Query: 94 LTRHPCPQCSRDFATVKILKTHLKTHEG-IIYPCPECDKTFLSTSGLREHRKVHAGVR-Y 151
+ CP+C + F+ + L+ H +TH G Y CPEC K+F L H++ H G + Y
Sbjct: 103 EKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQRTHTGEKPY 162
Query: 152 ICHACPREFSSEATMKAHVASHNG 175
C C + FS + H +H G
Sbjct: 163 KCPECGKSFSRRDALNVHQRTHTG 186
Score = 74.3 bits (181), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 63/124 (50%), Gaps = 3/124 (2%)
Query: 159 EFSSEATMKAHVASHNGVQHACDQCDRTFSCMPYLRQHQKLHSG-ITYSCPSCSKSFNRK 217
EF S +++ +AC +C ++FS +L +HQ+ H+G Y CP C KSF+ K
Sbjct: 3 EFGSSSSVAQAALEPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDK 62
Query: 218 DRYRMHLKLHQGVR-HTCKECSKEFSNEYNLKNHMVLH-DVRAYVCELCARQFTRVDHFN 275
H + H G + + C EC K FS NL+ H H + Y C C + F+++ H
Sbjct: 63 KDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLR 122
Query: 276 HHRR 279
H+R
Sbjct: 123 AHQR 126
>pdb|1MEY|C Chain C, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
pdb|1MEY|F Chain F, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
pdb|1MEY|G Chain G, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
Length = 87
Score = 58.2 bits (139), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 48/79 (60%), Gaps = 2/79 (2%)
Query: 124 YPCPECDKTFLSTSGLREHRKVHAGVR-YICHACPREFSSEATMKAHVASHNGVQ-HACD 181
Y CPEC K+F +S L++H++ H G + Y C C + FS + ++ H +H G + + C
Sbjct: 5 YKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPYKCP 64
Query: 182 QCDRTFSCMPYLRQHQKLH 200
+C ++FS +L +HQ+ H
Sbjct: 65 ECGKSFSRSDHLSRHQRTH 83
Score = 57.4 bits (137), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 41/77 (53%), Gaps = 2/77 (2%)
Query: 205 YSCPSCSKSFNRKDRYRMHLKLHQGVR-HTCKECSKEFSNEYNLKNHMVLH-DVRAYVCE 262
Y CP C KSF++ + H + H G + + C EC K FS +L+ H H + Y C
Sbjct: 5 YKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPYKCP 64
Query: 263 LCARQFTRVDHFNHHRR 279
C + F+R DH + H+R
Sbjct: 65 ECGKSFSRSDHLSRHQR 81
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 46/83 (55%), Gaps = 2/83 (2%)
Query: 151 YICHACPREFSSEATMKAHVASHNGVQ-HACDQCDRTFSCMPYLRQHQKLHSG-ITYSCP 208
Y C C + FS + ++ H +H G + + C +C ++FS L++HQ+ H+G Y CP
Sbjct: 5 YKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPYKCP 64
Query: 209 SCSKSFNRKDRYRMHLKLHQGVR 231
C KSF+R D H + HQ +
Sbjct: 65 ECGKSFSRSDHLSRHQRTHQNKK 87
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 43/78 (55%), Gaps = 2/78 (2%)
Query: 99 CPQCSRDFATVKILKTHLKTHEG-IIYPCPECDKTFLSTSGLREHRKVHAGVR-YICHAC 156
CP+C + F+ L+ H +TH G Y CPEC K+F +S L++H++ H G + Y C C
Sbjct: 7 CPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPYKCPEC 66
Query: 157 PREFSSEATMKAHVASHN 174
+ FS + H +H
Sbjct: 67 GKSFSRSDHLSRHQRTHQ 84
Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 44/82 (53%), Gaps = 2/82 (2%)
Query: 178 HACDQCDRTFSCMPYLRQHQKLHSG-ITYSCPSCSKSFNRKDRYRMHLKLHQGVR-HTCK 235
+ C +C ++FS L++HQ+ H+G Y CP C KSF++ + H + H G + + C
Sbjct: 5 YKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPYKCP 64
Query: 236 ECSKEFSNEYNLKNHMVLHDVR 257
EC K FS +L H H +
Sbjct: 65 ECGKSFSRSDHLSRHQRTHQNK 86
Score = 44.7 bits (104), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 45/118 (38%), Gaps = 39/118 (33%)
Query: 35 CPQCSRDFATVKILKTHLKTHEG-IIYPCPECDKTFLSTLTGTPQGARGRAVYLSRMSTT 93
CP+C + F+ L+ H +TH G Y CPEC K+
Sbjct: 7 CPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKS------------------------- 41
Query: 94 LTRHPCPQCSRDFATVKILKTHLKTHEG-IIYPCPECDKTFLSTSGLREHRKVHAGVR 150
F+ L+ H +TH G Y CPEC K+F + L H++ H +
Sbjct: 42 ------------FSQSSDLQKHQRTHTGEKPYKCPECGKSFSRSDHLSRHQRTHQNKK 87
>pdb|1G2F|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
pdb|1G2F|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
Length = 90
Score = 54.3 bits (129), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 45/81 (55%), Gaps = 4/81 (4%)
Query: 124 YPCP--ECDKTFLSTSGLREHRKVHAGVR-YICHACPREFSSEATMKAHVASHNGVQ-HA 179
Y CP CD+ F + L H ++H G + + C C R FS +A++ AH+ +H G + A
Sbjct: 5 YACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEKPFA 64
Query: 180 CDQCDRTFSCMPYLRQHQKLH 200
CD C R F+ + +H K+H
Sbjct: 65 CDICGRKFATLHTRTRHTKIH 85
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 44/83 (53%), Gaps = 8/83 (9%)
Query: 205 YSCP--SCSKSFNRKDRYRMHLKLHQGVR-HTCKECSKEFSNEYNLKNHMVLH-DVRAYV 260
Y+CP SC + F++K H+++H G + C+ C + FS + +L H+ H + +
Sbjct: 5 YACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEKPFA 64
Query: 261 CELCARQF----TRVDHFNHHRR 279
C++C R+F TR H H R
Sbjct: 65 CDICGRKFATLHTRTRHTKIHLR 87
Score = 36.6 bits (83), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 38/76 (50%), Gaps = 2/76 (2%)
Query: 181 DQCDRTFSCMPYLRQHQKLHSGIT-YSCPSCSKSFNRKDRYRMHLKLHQGVR-HTCKECS 238
+ CDR FS L H ++H+G + C C ++F+++ H++ H G + C C
Sbjct: 10 ESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEKPFACDICG 69
Query: 239 KEFSNEYNLKNHMVLH 254
++F+ + H +H
Sbjct: 70 RKFATLHTRTRHTKIH 85
Score = 30.8 bits (68), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Query: 235 KECSKEFSNEYNLKNHMVLH-DVRAYVCELCARQFTRVDHFNHHRRLQHDPEEF 287
+ C + FS + NL H+ +H + + C +C R F++ N H R + F
Sbjct: 10 ESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEKPF 63
Score = 28.1 bits (61), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Query: 99 CPQCSRDFATVKILKTHLKTHEG-IIYPCPECDKTFLSTSGLREHRKVH 146
C C R+F+ L H++TH G + C C + F + H K+H
Sbjct: 37 CRICMRNFSQQASLNAHIRTHTGEKPFACDICGRKFATLHTRTRHTKIH 85
>pdb|1UBD|C Chain C, Co-Crystal Structure Of Human Yy1 Zinc Finger Domain Bound
To The Adeno-Associated Virus P5 Initiator Element
Length = 124
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 55/106 (51%), Gaps = 6/106 (5%)
Query: 155 ACPREFSSEATMKAHVASHNGVQHACDQCDRTFSCMPYLRQHQKLHSG-ITYSC--PSCS 211
C + F + M+ H+ +H H C +C + F L++HQ +H+G + C C
Sbjct: 12 GCTKMFRDNSAMRKHLHTHGPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCG 71
Query: 212 KSFNRKDRYRMHLKLHQGVR-HTC--KECSKEFSNEYNLKNHMVLH 254
K F+ R H+++H G R + C C+K+F+ NLK+H++ H
Sbjct: 72 KRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTH 117
Score = 51.2 bits (121), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 57/111 (51%), Gaps = 8/111 (7%)
Query: 99 CPQ--CSRDFATVKILKTHLKTHEGIIYPCPECDKTFLSTSGLREHRKVHAGVR-YIC-- 153
CP C++ F ++ HL TH ++ C EC K F+ +S L+ H+ VH G + + C
Sbjct: 8 CPHKGCTKMFRDNSAMRKHLHTHGPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTF 67
Query: 154 HACPREFSSEATMKAHVASHNGVQ-HAC--DQCDRTFSCMPYLRQHQKLHS 201
C + FS + ++ HV H G + + C D C++ F+ L+ H H+
Sbjct: 68 EGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHA 118
Score = 47.8 bits (112), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 51/118 (43%), Gaps = 6/118 (5%)
Query: 122 IIYPCPECDKTFLSTSGLREHRKVHAGVRYICHACPREFSSEATMKAHVASHNG---VQH 178
I P C K F S +R+H H ++C C + F + +K H H G Q
Sbjct: 6 IACPHKGCTKMFRDNSAMRKHLHTHGPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQC 65
Query: 179 ACDQCDRTFSCMPYLRQHQKLHSGI-TYSCP--SCSKSFNRKDRYRMHLKLHQGVRHT 233
+ C + FS LR H ++H+G Y CP C+K F + + H+ H ++
Sbjct: 66 TFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAKAKNN 123
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 54/121 (44%), Gaps = 12/121 (9%)
Query: 35 CPQ--CSRDFATVKILKTHLKTHEGIIYPCPECDKTFLSTLTGTPQGARGRAVYLSRMST 92
CP C++ F ++ HL TH ++ C EC K F+ + + R + V+
Sbjct: 8 CPHKGCTKMFRDNSAMRKHLHTHGPRVHVCAECGKAFVE----SSKLKRHQLVHTGEKPF 63
Query: 93 TLTRHPCPQCSRDFATVKILKTHLKTHEGI-IYPCP--ECDKTFLSTSGLREHRKVHAGV 149
T C + F+ L+TH++ H G Y CP C+K F ++ L+ H HA
Sbjct: 64 QCTFE---GCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAKA 120
Query: 150 R 150
+
Sbjct: 121 K 121
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 37/82 (45%), Gaps = 5/82 (6%)
Query: 204 TYSCP--SCSKSFNRKDRYRMHLKLHQGVRHTCKECSKEFSNEYNLKNHMVLH-DVRAYV 260
T +CP C+K F R HL H H C EC K F LK H ++H + +
Sbjct: 5 TIACPHKGCTKMFRDNSAMRKHLHTHGPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQ 64
Query: 261 C--ELCARQFTRVDHFNHHRRL 280
C E C ++F+ + H R+
Sbjct: 65 CTFEGCGKRFSLDFNLRTHVRI 86
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 13/54 (24%), Positives = 24/54 (44%)
Query: 235 KECSKEFSNEYNLKNHMVLHDVRAYVCELCARQFTRVDHFNHHRRLQHDPEEFE 288
K C+K F + ++ H+ H R +VC C + F H+ + + F+
Sbjct: 11 KGCTKMFRDNSAMRKHLHTHGPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQ 64
>pdb|2YT9|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 345 In
Zinc Finger Protein 278
Length = 95
Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 46/105 (43%), Gaps = 25/105 (23%)
Query: 179 ACDQCDRTFSCMPYLRQHQKLHSG-ITYSCPSCSKSFNRKDRYRMHLKLHQGVRHTCKEC 237
AC+ C + F + +L +H+ HSG YSCP C F RKDR H++ H G
Sbjct: 9 ACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSV------ 62
Query: 238 SKEFSNEYNLKNHMVLHDVRAYVCELCARQFTRVDHFNHHRRLQH 282
+ Y+C+ C + F+R DH N H + H
Sbjct: 63 ------------------GKPYICQSCGKGFSRPDHLNGHIKQVH 89
Score = 37.4 bits (85), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 38/82 (46%), Gaps = 5/82 (6%)
Query: 126 CPECDKTFLSTSGLREHRKVHAGVR-YICHACPREFSSEATMKAHVASHNGV---QHACD 181
C C K F L H+ H+G + Y C C F + M HV SH+G + C
Sbjct: 10 CEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQ 69
Query: 182 QCDRTFSCMPYLRQH-QKLHSG 202
C + FS +L H +++HSG
Sbjct: 70 SCGKGFSRPDHLNGHIKQVHSG 91
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 4/54 (7%)
Query: 99 CPQCSRDFATVKILKTHLKTHEGII---YPCPECDKTFLSTSGLREH-RKVHAG 148
CP C F + H+++H+G + Y C C K F L H ++VH+G
Sbjct: 38 CPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGFSRPDHLNGHIKQVHSG 91
>pdb|2CSH|A Chain A, Solution Structure Of Tandem Repeat Of The Zf-C2h2 Domains
Of Human Zinc Finger Protein 297b
Length = 110
Score = 50.8 bits (120), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 41/70 (58%), Gaps = 2/70 (2%)
Query: 210 CSKSFNRKDRYRMHLKLHQGVR-HTCKECSKEFSNEYNLKNHMVLH-DVRAYVCELCARQ 267
C KSF K + H+ +H G+R + C C K+F +++L HM +H ++ Y C +CA++
Sbjct: 15 CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKR 74
Query: 268 FTRVDHFNHH 277
F D F+ H
Sbjct: 75 FMWRDSFHRH 84
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 156 CPREFSSEATMKAHVASHNGVQ-HACDQCDRTFSCMPYLRQHQKLHSGIT-YSCPSCSKS 213
C + F+ ++ H++ H G++ + C C + F +L H K+H+GI Y C C+K
Sbjct: 15 CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKR 74
Query: 214 FNRKDRYRMHL 224
F +D + H+
Sbjct: 75 FMWRDSFHRHV 85
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 35/78 (44%), Gaps = 3/78 (3%)
Query: 97 HPCPQCSRDFATVKILKTHLKTHEGI-IYPCPECDKTFLSTSGLREHRKVHAGVR-YICH 154
+PC QC + F H+ H G+ Y C C K F L H K+H G++ Y C+
Sbjct: 11 YPC-QCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECN 69
Query: 155 ACPREFSSEATMKAHVAS 172
C + F + HV S
Sbjct: 70 ICAKRFMWRDSFHRHVTS 87
Score = 37.4 bits (85), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Query: 182 QCDRTFSCMPYLRQHQKLHSGI-TYSCPSCSKSFNRKDRYRMHLKLHQGVR-HTCKECSK 239
QC ++F+ +H +H G+ Y C C K F K H+K+H G++ + C C+K
Sbjct: 14 QCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAK 73
Query: 240 EF 241
F
Sbjct: 74 RF 75
Score = 32.0 bits (71), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 14/54 (25%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Query: 236 ECSKEFSNEYNLKNHMVLH-DVRAYVCELCARQFTRVDHFNHHRRLQHDPEEFE 288
+C K F+++ HM +H +R Y C +C ++F H H ++ + +E
Sbjct: 14 QCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYE 67
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 35/85 (41%), Gaps = 11/85 (12%)
Query: 59 IYPCPECDKTFLSTLTGTPQGARGRAVYLSRMSTTLTRHPCPQCSRDFATVKILKTHLKT 118
+YPC +C K+F T + R R + M L + C C + F L H+K
Sbjct: 10 LYPC-QCGKSF------THKSQRDRHM---SMHLGLRPYGCGVCGKKFKMKHHLVGHMKI 59
Query: 119 HEGII-YPCPECDKTFLSTSGLREH 142
H GI Y C C K F+ H
Sbjct: 60 HTGIKPYECNICAKRFMWRDSFHRH 84
>pdb|1A1F|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site)
pdb|1A1G|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt Site)
Length = 90
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 42/81 (51%), Gaps = 4/81 (4%)
Query: 124 YPCP--ECDKTFLSTSGLREHRKVHAGVR-YICHACPREFSSEATMKAHVASHNGVQ-HA 179
Y CP CD+ F +S L H ++H G + + C C R FS + H+ +H G + A
Sbjct: 5 YACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 180 CDQCDRTFSCMPYLRQHQKLH 200
CD C R F+ ++H K+H
Sbjct: 65 CDICGRKFARSDERKRHTKIH 85
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 41/80 (51%), Gaps = 4/80 (5%)
Query: 205 YSCP--SCSKSFNRKDRYRMHLKLHQGVR-HTCKECSKEFSNEYNLKNHMVLH-DVRAYV 260
Y+CP SC + F+ H+++H G + C+ C + FS +L H+ H + +
Sbjct: 5 YACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 261 CELCARQFTRVDHFNHHRRL 280
C++C R+F R D H ++
Sbjct: 65 CDICGRKFARSDERKRHTKI 84
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 2/76 (2%)
Query: 181 DQCDRTFSCMPYLRQHQKLHSGIT-YSCPSCSKSFNRKDRYRMHLKLHQGVR-HTCKECS 238
+ CDR FS L +H ++H+G + C C ++F+R D H++ H G + C C
Sbjct: 10 ESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICG 69
Query: 239 KEFSNEYNLKNHMVLH 254
++F+ K H +H
Sbjct: 70 RKFARSDERKRHTKIH 85
Score = 31.6 bits (70), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 11/67 (16%)
Query: 91 STTLTRH----------PCPQCSRDFATVKILKTHLKTHEG-IIYPCPECDKTFLSTSGL 139
S+ LTRH C C R+F+ L TH++TH G + C C + F +
Sbjct: 19 SSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDER 78
Query: 140 REHRKVH 146
+ H K+H
Sbjct: 79 KRHTKIH 85
>pdb|1G2D|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (CLONE
#2)
pdb|1G2D|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (CLONE
#2)
Length = 90
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 41/81 (50%), Gaps = 4/81 (4%)
Query: 124 YPCP--ECDKTFLSTSGLREHRKVHAGVR-YICHACPREFSSEATMKAHVASHNGVQ-HA 179
Y CP CD+ F + L H ++H G + + C C R FS + H+ +H G + A
Sbjct: 5 YACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKPFA 64
Query: 180 CDQCDRTFSCMPYLRQHQKLH 200
CD C R F+ + +H K+H
Sbjct: 65 CDICGRKFATLHTRDRHTKIH 85
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 42/80 (52%), Gaps = 4/80 (5%)
Query: 205 YSCP--SCSKSFNRKDRYRMHLKLHQGVR-HTCKECSKEFSNEYNLKNHMVLH-DVRAYV 260
Y+CP SC + F++K H+++H G + C+ C + FS L H+ H + +
Sbjct: 5 YACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKPFA 64
Query: 261 CELCARQFTRVDHFNHHRRL 280
C++C R+F + + H ++
Sbjct: 65 CDICGRKFATLHTRDRHTKI 84
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 37/78 (47%), Gaps = 2/78 (2%)
Query: 98 PCPQCSRDFATVKILKTHLKTHEGII-YPCPECDKTFLSTSGLREHRKVHAGVR-YICHA 155
P C R F+ L TH++ H G + C C + F +GL +H + H G + + C
Sbjct: 8 PVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKPFACDI 67
Query: 156 CPREFSSEATMKAHVASH 173
C R+F++ T H H
Sbjct: 68 CGRKFATLHTRDRHTKIH 85
Score = 35.0 bits (79), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 37/76 (48%), Gaps = 2/76 (2%)
Query: 181 DQCDRTFSCMPYLRQHQKLHSGIT-YSCPSCSKSFNRKDRYRMHLKLHQGVR-HTCKECS 238
+ CDR FS L H ++H+G + C C ++F++ H++ H G + C C
Sbjct: 10 ESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKPFACDICG 69
Query: 239 KEFSNEYNLKNHMVLH 254
++F+ + H +H
Sbjct: 70 RKFATLHTRDRHTKIH 85
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Query: 235 KECSKEFSNEYNLKNHMVLH-DVRAYVCELCARQFTRVDHFNHHRRLQHDPEEF 287
+ C + FS + NL H+ +H + + C +C R F++ N H R + F
Sbjct: 10 ESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKPF 63
Score = 28.9 bits (63), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 33/87 (37%), Gaps = 10/87 (11%)
Query: 34 PCPQCSRDFATVKILKTHLKTHEGII-YPCPECDKTFLSTLTGTPQGARGRAVYLSRMST 92
P C R F+ L TH++ H G + C C + F S TG Q R T
Sbjct: 8 PVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNF-SQHTGLNQHI--------RTHT 58
Query: 93 TLTRHPCPQCSRDFATVKILKTHLKTH 119
C C R FAT+ H K H
Sbjct: 59 GEKPFACDICGRKFATLHTRDRHTKIH 85
>pdb|1P47|A Chain A, Crystal Structure Of Tandem Zif268 Molecules Complexed To
Dna
pdb|1P47|B Chain B, Crystal Structure Of Tandem Zif268 Molecules Complexed To
Dna
Length = 87
Score = 48.1 bits (113), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 43/80 (53%), Gaps = 4/80 (5%)
Query: 205 YSCP--SCSKSFNRKDRYRMHLKLHQGVR-HTCKECSKEFSNEYNLKNHMVLH-DVRAYV 260
Y+CP SC + F+R D H+++H G + C+ C + FS +L H+ H + +
Sbjct: 4 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 63
Query: 261 CELCARQFTRVDHFNHHRRL 280
C++C R+F R D H ++
Sbjct: 64 CDICGRKFARSDERKRHTKI 83
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 41/81 (50%), Gaps = 4/81 (4%)
Query: 124 YPCP--ECDKTFLSTSGLREHRKVHAGVR-YICHACPREFSSEATMKAHVASHNGVQ-HA 179
Y CP CD+ F + L H ++H G + + C C R FS + H+ +H G + A
Sbjct: 4 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 63
Query: 180 CDQCDRTFSCMPYLRQHQKLH 200
CD C R F+ ++H K+H
Sbjct: 64 CDICGRKFARSDERKRHTKIH 84
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 2/76 (2%)
Query: 181 DQCDRTFSCMPYLRQHQKLHSGIT-YSCPSCSKSFNRKDRYRMHLKLHQGVR-HTCKECS 238
+ CDR FS L +H ++H+G + C C ++F+R D H++ H G + C C
Sbjct: 9 ESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICG 68
Query: 239 KEFSNEYNLKNHMVLH 254
++F+ K H +H
Sbjct: 69 RKFARSDERKRHTKIH 84
Score = 35.0 bits (79), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 33/78 (42%), Gaps = 2/78 (2%)
Query: 98 PCPQCSRDFATVKILKTHLKTHEGII-YPCPECDKTFLSTSGLREHRKVHAGVR-YICHA 155
P C R F+ L H++ H G + C C + F + L H + H G + + C
Sbjct: 7 PVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDI 66
Query: 156 CPREFSSEATMKAHVASH 173
C R+F+ K H H
Sbjct: 67 CGRKFARSDERKRHTKIH 84
>pdb|1AAY|A Chain A, Zif268 Zinc Finger-Dna Complex
pdb|1A1L|A Chain A, Zif268 Zinc Finger-Dna Complex (Gcac Site)
Length = 90
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 43/80 (53%), Gaps = 4/80 (5%)
Query: 205 YSCP--SCSKSFNRKDRYRMHLKLHQGVR-HTCKECSKEFSNEYNLKNHMVLH-DVRAYV 260
Y+CP SC + F+R D H+++H G + C+ C + FS +L H+ H + +
Sbjct: 5 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 261 CELCARQFTRVDHFNHHRRL 280
C++C R+F R D H ++
Sbjct: 65 CDICGRKFARSDERKRHTKI 84
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 41/81 (50%), Gaps = 4/81 (4%)
Query: 124 YPCP--ECDKTFLSTSGLREHRKVHAGVR-YICHACPREFSSEATMKAHVASHNGVQ-HA 179
Y CP CD+ F + L H ++H G + + C C R FS + H+ +H G + A
Sbjct: 5 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 180 CDQCDRTFSCMPYLRQHQKLH 200
CD C R F+ ++H K+H
Sbjct: 65 CDICGRKFARSDERKRHTKIH 85
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 2/76 (2%)
Query: 181 DQCDRTFSCMPYLRQHQKLHSGIT-YSCPSCSKSFNRKDRYRMHLKLHQGVR-HTCKECS 238
+ CDR FS L +H ++H+G + C C ++F+R D H++ H G + C C
Sbjct: 10 ESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICG 69
Query: 239 KEFSNEYNLKNHMVLH 254
++F+ K H +H
Sbjct: 70 RKFARSDERKRHTKIH 85
Score = 35.0 bits (79), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 33/78 (42%), Gaps = 2/78 (2%)
Query: 98 PCPQCSRDFATVKILKTHLKTHEGII-YPCPECDKTFLSTSGLREHRKVHAGVR-YICHA 155
P C R F+ L H++ H G + C C + F + L H + H G + + C
Sbjct: 8 PVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDI 67
Query: 156 CPREFSSEATMKAHVASH 173
C R+F+ K H H
Sbjct: 68 CGRKFARSDERKRHTKIH 85
>pdb|2JP9|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
pdb|2JPA|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
pdb|2PRT|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
Length = 119
Score = 47.8 bits (112), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 57/132 (43%), Gaps = 28/132 (21%)
Query: 100 PQCSRDFATVKILKTHLKTHEG-IIYPC--PECDKTFLSTSGLREHRKVHAGVR-YICHA 155
P C++ + + L+ H + H G Y C +C++ F + L+ H++ H GV+ + C
Sbjct: 12 PGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKT 71
Query: 156 CPREFSSEATMKAHVASHNGVQHACDQCDRTFSCMPYLRQHQKLHSGITYSCPSCSKSFN 215
C R+FS +K H +H G ++ FSC PSC K F
Sbjct: 72 CQRKFSRSDHLKTHTRTHTG--------EKPFSC----------------RWPSCQKKFA 107
Query: 216 RKDRYRMHLKLH 227
R D H +H
Sbjct: 108 RSDELVRHHNMH 119
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 55/107 (51%), Gaps = 7/107 (6%)
Query: 155 ACPREFSSEATMKAHVASHNGVQ-HACD--QCDRTFSCMPYLRQHQKLHSGIT-YSCPSC 210
C + + + ++ H H G + + CD C+R FS L++HQ+ H+G+ + C +C
Sbjct: 13 GCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTC 72
Query: 211 SKSFNRKDRYRMHLKLHQGVR-HTCK--ECSKEFSNEYNLKNHMVLH 254
+ F+R D + H + H G + +C+ C K+F+ L H +H
Sbjct: 73 QRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH 119
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 40/76 (52%), Gaps = 4/76 (5%)
Query: 208 PSCSKSFNRKDRYRMHLKLHQGVR-HTC--KECSKEFSNEYNLKNHMVLH-DVRAYVCEL 263
P C+K + + +MH + H G + + C K+C + FS LK H H V+ + C+
Sbjct: 12 PGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKT 71
Query: 264 CARQFTRVDHFNHHRR 279
C R+F+R DH H R
Sbjct: 72 CQRKFSRSDHLKTHTR 87
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 51/117 (43%), Gaps = 15/117 (12%)
Query: 36 PQCSRDFATVKILKTHLKTHEG-IIYPC--PECDKTFLSTLTGTPQGARGRAVYLSRMST 92
P C++ + + L+ H + H G Y C +C++ F + + Q R + R T
Sbjct: 12 PGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRF----SRSDQLKRHQ-----RRHT 62
Query: 93 TLTRHPCPQCSRDFATVKILKTHLKTHEG-IIYPC--PECDKTFLSTSGLREHRKVH 146
+ C C R F+ LKTH +TH G + C P C K F + L H +H
Sbjct: 63 GVKPFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH 119
>pdb|1ZAA|C Chain C, Zinc Finger-Dna Recognition: Crystal Structure Of A
Zif268- Dna Complex At 2.1 Angstroms
Length = 87
Score = 47.8 bits (112), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 43/80 (53%), Gaps = 4/80 (5%)
Query: 205 YSCP--SCSKSFNRKDRYRMHLKLHQGVR-HTCKECSKEFSNEYNLKNHMVLH-DVRAYV 260
Y+CP SC + F+R D H+++H G + C+ C + FS +L H+ H + +
Sbjct: 5 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 261 CELCARQFTRVDHFNHHRRL 280
C++C R+F R D H ++
Sbjct: 65 CDICGRKFARSDERKRHTKI 84
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 41/81 (50%), Gaps = 4/81 (4%)
Query: 124 YPCP--ECDKTFLSTSGLREHRKVHAGVR-YICHACPREFSSEATMKAHVASHNGVQ-HA 179
Y CP CD+ F + L H ++H G + + C C R FS + H+ +H G + A
Sbjct: 5 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 180 CDQCDRTFSCMPYLRQHQKLH 200
CD C R F+ ++H K+H
Sbjct: 65 CDICGRKFARSDERKRHTKIH 85
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 2/76 (2%)
Query: 181 DQCDRTFSCMPYLRQHQKLHSGIT-YSCPSCSKSFNRKDRYRMHLKLHQGVR-HTCKECS 238
+ CDR FS L +H ++H+G + C C ++F+R D H++ H G + C C
Sbjct: 10 ESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICG 69
Query: 239 KEFSNEYNLKNHMVLH 254
++F+ K H +H
Sbjct: 70 RKFARSDERKRHTKIH 85
Score = 34.7 bits (78), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 33/78 (42%), Gaps = 2/78 (2%)
Query: 98 PCPQCSRDFATVKILKTHLKTHEGII-YPCPECDKTFLSTSGLREHRKVHAGVR-YICHA 155
P C R F+ L H++ H G + C C + F + L H + H G + + C
Sbjct: 8 PVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDI 67
Query: 156 CPREFSSEATMKAHVASH 173
C R+F+ K H H
Sbjct: 68 CGRKFARSDERKRHTKIH 85
Score = 32.0 bits (71), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Query: 235 KECSKEFSNEYNLKNHMVLH-DVRAYVCELCARQFTRVDHFNHHRRLQHDPEEF 287
+ C + FS L H+ +H + + C +C R F+R DH H R + F
Sbjct: 10 ESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPF 63
>pdb|1A1H|A Chain A, Qgsr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site)
Length = 90
Score = 47.8 bits (112), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 41/81 (50%), Gaps = 4/81 (4%)
Query: 124 YPCP--ECDKTFLSTSGLREHRKVHAGVR-YICHACPREFSSEATMKAHVASHNGVQ-HA 179
Y CP CD+ F + L H ++H G + + C C R FS + H+ +H G + A
Sbjct: 5 YACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 180 CDQCDRTFSCMPYLRQHQKLH 200
CD C R F+ ++H K+H
Sbjct: 65 CDICGRKFARSDERKRHTKIH 85
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 42/80 (52%), Gaps = 4/80 (5%)
Query: 205 YSCP--SCSKSFNRKDRYRMHLKLHQGVR-HTCKECSKEFSNEYNLKNHMVLH-DVRAYV 260
Y+CP SC + F++ H+++H G + C+ C + FS +L H+ H + +
Sbjct: 5 YACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 261 CELCARQFTRVDHFNHHRRL 280
C++C R+F R D H ++
Sbjct: 65 CDICGRKFARSDERKRHTKI 84
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 2/76 (2%)
Query: 181 DQCDRTFSCMPYLRQHQKLHSGIT-YSCPSCSKSFNRKDRYRMHLKLHQGVR-HTCKECS 238
+ CDR FS L +H ++H+G + C C ++F+R D H++ H G + C C
Sbjct: 10 ESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICG 69
Query: 239 KEFSNEYNLKNHMVLH 254
++F+ K H +H
Sbjct: 70 RKFARSDERKRHTKIH 85
Score = 33.1 bits (74), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Query: 235 KECSKEFSNEYNLKNHMVLH-DVRAYVCELCARQFTRVDHFNHHRRLQHDPEEF 287
+ C + FS +L H+ +H + + C +C R F+R DH H R + F
Sbjct: 10 ESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPF 63
Score = 32.3 bits (72), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 40/90 (44%), Gaps = 12/90 (13%)
Query: 60 YPCP--ECDKTFLSTLTGTPQGARGRAVYLSRMSTTLTRHPCPQCSRDFATVKILKTHLK 117
Y CP CD+ F + G+ R + R+ T C C R+F+ L TH++
Sbjct: 5 YACPVESCDRRF------SQSGSLTRHI---RIHTGQKPFQCRICMRNFSRSDHLTTHIR 55
Query: 118 THEG-IIYPCPECDKTFLSTSGLREHRKVH 146
TH G + C C + F + + H K+H
Sbjct: 56 THTGEKPFACDICGRKFARSDERKRHTKIH 85
>pdb|1A1I|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site)
pdb|1A1J|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt Site)
pdb|1A1K|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site)
Length = 90
Score = 47.4 bits (111), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 42/81 (51%), Gaps = 4/81 (4%)
Query: 124 YPCP--ECDKTFLSTSGLREHRKVHAGVR-YICHACPREFSSEATMKAHVASHNGVQ-HA 179
Y CP CD+ F ++ L H ++H G + + C C R FS + H+ +H G + A
Sbjct: 5 YACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 180 CDQCDRTFSCMPYLRQHQKLH 200
CD C R F+ ++H K+H
Sbjct: 65 CDICGRKFARSDERKRHTKIH 85
Score = 44.7 bits (104), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 42/80 (52%), Gaps = 4/80 (5%)
Query: 205 YSCP--SCSKSFNRKDRYRMHLKLHQGVR-HTCKECSKEFSNEYNLKNHMVLH-DVRAYV 260
Y+CP SC + F+R H+++H G + C+ C + FS +L H+ H + +
Sbjct: 5 YACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 261 CELCARQFTRVDHFNHHRRL 280
C++C R+F R D H ++
Sbjct: 65 CDICGRKFARSDERKRHTKI 84
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 2/76 (2%)
Query: 181 DQCDRTFSCMPYLRQHQKLHSGIT-YSCPSCSKSFNRKDRYRMHLKLHQGVR-HTCKECS 238
+ CDR FS L +H ++H+G + C C ++F+R D H++ H G + C C
Sbjct: 10 ESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICG 69
Query: 239 KEFSNEYNLKNHMVLH 254
++F+ K H +H
Sbjct: 70 RKFARSDERKRHTKIH 85
Score = 30.8 bits (68), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 37/90 (41%), Gaps = 12/90 (13%)
Query: 60 YPCP--ECDKTFLSTLTGTPQGARGRAVYLSRMSTTLTRHPCPQCSRDFATVKILKTHLK 117
Y CP CD+ F + T R+ T C C R+F+ L TH++
Sbjct: 5 YACPVESCDRRFSRSADLTRH---------IRIHTGQKPFQCRICMRNFSRSDHLTTHIR 55
Query: 118 THEG-IIYPCPECDKTFLSTSGLREHRKVH 146
TH G + C C + F + + H K+H
Sbjct: 56 THTGEKPFACDICGRKFARSDERKRHTKIH 85
>pdb|2DMD|A Chain A, Solution Structure Of The N-Terminal C2h2 Type
Zinc-Binding Domain Of The Zinc Finger Protein 64,
Isoforms 1 And 2
Length = 96
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Query: 97 HPCPQCSRDFATVKILKTHLKTHEGI-IYPCPECDKTFLSTSGLREHRKVHAGVR-YICH 154
H C C + F+ LKTH++ H G+ Y C CD +S L +H ++H+ R + C
Sbjct: 9 HKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQ 68
Query: 155 ACPREFSSEATMKAHVASHNG 175
CP + + + H+ SH G
Sbjct: 69 ICPYASRNSSQLTVHLRSHTG 89
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 36/60 (60%), Gaps = 2/60 (3%)
Query: 207 CPSCSKSFNRKDRYRMHLKLHQGVR-HTCKECSKEFSNEYNLKNHMVLH-DVRAYVCELC 264
C C K F+RKD+ + H++ H GV+ + CK C ++ +L H+ +H D R + C++C
Sbjct: 11 CEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQIC 70
Score = 35.8 bits (81), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Query: 232 HTCKECSKEFSNEYNLKNHMVLH-DVRAYVCELCARQFTRVDHFNHHRRLQHDPEEFE 288
H C+ C K FS + LK HM H V+ Y C+ C N H R+ D F+
Sbjct: 9 HKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFK 66
Score = 33.1 bits (74), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 37/79 (46%), Gaps = 2/79 (2%)
Query: 153 CHACPREFSSEATMKAHVASHNGVQ-HACDQCDRTFSCMPYLRQHQKLHSGI-TYSCPSC 210
C C + FS + +K H+ H GV+ + C CD + L +H ++HS + C C
Sbjct: 11 CEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQIC 70
Query: 211 SKSFNRKDRYRMHLKLHQG 229
+ + +HL+ H G
Sbjct: 71 PYASRNSSQLTVHLRSHTG 89
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 42/107 (39%), Gaps = 36/107 (33%)
Query: 33 HPCPQCSRDFATVKILKTHLKTHEGI-IYPCPECDKTFLSTLTGTPQGARGRAVYLSRMS 91
H C C + F+ LKTH++ H G+ Y C CD Y + S
Sbjct: 9 HKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCD-------------------YAAADS 49
Query: 92 TTLTRH-------------PCPQCSRDFATVKILKTHLKTHEGIIYP 125
++L +H CP SR+ + + + HL++H G P
Sbjct: 50 SSLNKHLRIHSDERPFKCQICPYASRNSSQLTV---HLRSHTGDSGP 93
>pdb|1JK1|A Chain A, Zif268 D20a Mutant Bound To Wt Dna Site
pdb|1JK2|A Chain A, Zif268 D20a Mutant Bound To The Gct Dna Site
Length = 90
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 42/81 (51%), Gaps = 4/81 (4%)
Query: 124 YPCP--ECDKTFLSTSGLREHRKVHAGVR-YICHACPREFSSEATMKAHVASHNGVQ-HA 179
Y CP CD+ F ++ L H ++H G + + C C R FS + H+ +H G + A
Sbjct: 5 YACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 180 CDQCDRTFSCMPYLRQHQKLH 200
CD C R F+ ++H K+H
Sbjct: 65 CDICGRKFARSDERKRHTKIH 85
Score = 45.1 bits (105), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 42/80 (52%), Gaps = 4/80 (5%)
Query: 205 YSCP--SCSKSFNRKDRYRMHLKLHQGVR-HTCKECSKEFSNEYNLKNHMVLH-DVRAYV 260
Y+CP SC + F+R H+++H G + C+ C + FS +L H+ H + +
Sbjct: 5 YACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 261 CELCARQFTRVDHFNHHRRL 280
C++C R+F R D H ++
Sbjct: 65 CDICGRKFARSDERKRHTKI 84
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 2/76 (2%)
Query: 181 DQCDRTFSCMPYLRQHQKLHSGIT-YSCPSCSKSFNRKDRYRMHLKLHQGVR-HTCKECS 238
+ CDR FS L +H ++H+G + C C ++F+R D H++ H G + C C
Sbjct: 10 ESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICG 69
Query: 239 KEFSNEYNLKNHMVLH 254
++F+ K H +H
Sbjct: 70 RKFARSDERKRHTKIH 85
Score = 30.8 bits (68), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 39/93 (41%), Gaps = 18/93 (19%)
Query: 60 YPCP--ECDKTFLSTLTGTPQGARGRAVYLSR---MSTTLTRHPCPQCSRDFATVKILKT 114
Y CP CD+ F R+ L+R + T C C R+F+ L T
Sbjct: 5 YACPVESCDRRF------------SRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTT 52
Query: 115 HLKTHEG-IIYPCPECDKTFLSTSGLREHRKVH 146
H++TH G + C C + F + + H K+H
Sbjct: 53 HIRTHTGEKPFACDICGRKFARSDERKRHTKIH 85
>pdb|1TF6|A Chain A, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger Domain
Bound To The 5s Ribosomal Rna Gene Internal Control
Region
pdb|1TF6|D Chain D, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger Domain
Bound To The 5s Ribosomal Rna Gene Internal Control
Region
Length = 190
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 64/142 (45%), Gaps = 14/142 (9%)
Query: 102 CSRDFATVKILKTHLKTHEG-IIYPCPE--CDKTFLSTSGLREHRKVHAGVR-YICHA-- 155
C + L+ HL H G +PC E C+K F S L H H G + + C +
Sbjct: 20 CGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDG 79
Query: 156 CPREFSSEATMKAHVASHNGVQ---HAC--DQCDRTFSCMPYLRQHQKLHSG-ITYSCP- 208
C F+++A MK H + ++ + C + C + F L+ HQ H+ + Y CP
Sbjct: 80 CDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPH 139
Query: 209 -SCSKSFNRKDRYRMHLKLHQG 229
C K F+ R + H K+H G
Sbjct: 140 EGCDKRFSLPSRLKRHEKVHAG 161
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 57/118 (48%), Gaps = 13/118 (11%)
Query: 98 PCPQ--CSRDFATVKILKTHLKTHEG-IIYPCPE--CDKTFLSTSGLREHRKVHAGVR-- 150
PC + C + F ++ L H TH G + C CD F + + +++H ++
Sbjct: 44 PCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNRFHNIKIC 103
Query: 151 -YICH--ACPREFSSEATMKAHVASH-NGVQHAC--DQCDRTFSCMPYLRQHQKLHSG 202
Y+CH C + F +K H SH + + C + CD+ FS L++H+K+H+G
Sbjct: 104 VYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG 161
>pdb|2KMK|A Chain A, Gfi-1 Zinc Fingers 3-5 Complexed With Dna
Length = 82
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 39/81 (48%), Gaps = 2/81 (2%)
Query: 124 YPCPECDKTFLSTSGLREHRKVHAGVR-YICHACPREFSSEATMKAHVASHNGVQ-HACD 181
+ C C K+F +S L H +H+ R Y C C + F ++ MK H H G + H C
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQ 61
Query: 182 QCDRTFSCMPYLRQHQKLHSG 202
C + FS L H + H+G
Sbjct: 62 VCGKAFSQSSNLITHSRKHTG 82
Score = 44.3 bits (103), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 35/79 (44%), Gaps = 2/79 (2%)
Query: 99 CPQCSRDFATVKILKTHLKTHEGI-IYPCPECDKTFLSTSGLREHRKVHAGVR-YICHAC 156
C C + F L THL H YPC C K F S +++H +H G + + C C
Sbjct: 4 CKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVC 63
Query: 157 PREFSSEATMKAHVASHNG 175
+ FS + + H H G
Sbjct: 64 GKAFSQSSNLITHSRKHTG 82
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 39/78 (50%), Gaps = 2/78 (2%)
Query: 204 TYSCPSCSKSFNRKDRYRMHLKLHQGVR-HTCKECSKEFSNEYNLKNHMVLH-DVRAYVC 261
++ C C KSF R HL +H R + C+ C K F + ++K H +H + + C
Sbjct: 1 SFDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKC 60
Query: 262 ELCARQFTRVDHFNHHRR 279
++C + F++ + H R
Sbjct: 61 QVCGKAFSQSSNLITHSR 78
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 35/77 (45%), Gaps = 2/77 (2%)
Query: 180 CDQCDRTFSCMPYLRQHQKLHSGI-TYSCPSCSKSFNRKDRYRMHLKLHQGVR-HTCKEC 237
C C ++F L H +HS Y C C K F++K + H +H G + H C+ C
Sbjct: 4 CKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVC 63
Query: 238 SKEFSNEYNLKNHMVLH 254
K FS NL H H
Sbjct: 64 GKAFSQSSNLITHSRKH 80
Score = 33.5 bits (75), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 19/81 (23%), Positives = 38/81 (46%), Gaps = 2/81 (2%)
Query: 151 YICHACPREFSSEATMKAHVASHNGVQ-HACDQCDRTFSCMPYLRQHQKLHSGIT-YSCP 208
+ C C + F +T+ H+ H+ + + C C + F +++H +H+G + C
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQ 61
Query: 209 SCSKSFNRKDRYRMHLKLHQG 229
C K+F++ H + H G
Sbjct: 62 VCGKAFSQSSNLITHSRKHTG 82
Score = 28.1 bits (61), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 31/88 (35%), Gaps = 10/88 (11%)
Query: 35 CPQCSRDFATVKILKTHLKTHEGI-IYPCPECDKTFLSTLTGTPQGARGRAVYLSRMSTT 93
C C + F L THL H YPC C K F + + + T
Sbjct: 4 CKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRF---------HQKSDMKKHTFIHTG 54
Query: 94 LTRHPCPQCSRDFATVKILKTHLKTHEG 121
H C C + F+ L TH + H G
Sbjct: 55 EKPHKCQVCGKAFSQSSNLITHSRKHTG 82
>pdb|2DLQ|A Chain A, Solution Structure Of The Tandem Four Zf-C2h2 Domain
Repeats Of Murine Gli-Kruppel Family Member Hkr3
Length = 124
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 52/111 (46%), Gaps = 7/111 (6%)
Query: 126 CPECDKTFLSTSGLREHRKVHAGVR-YICHACPREFSSEATMKAHVA----SHNGVQHAC 180
CP C K FLS L+ H + H G + + C C + + + + H A + + C
Sbjct: 10 CPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTC 69
Query: 181 DQCDRTFSCMPYLRQHQKLHSG-ITYSCPSCSKSFNRKDRYRMHL-KLHQG 229
C TF LR H H+G + Y C SCS+ F +K + H+ KLH G
Sbjct: 70 SVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSG 120
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 50/117 (42%), Gaps = 9/117 (7%)
Query: 35 CPQCSRDFATVKILKTHLKTHEG-IIYPCPECDKTFLSTLTGTPQGARGRAVYLSRMSTT 93
CP C + F + LK H + H G + CP+C K + AR ++R
Sbjct: 10 CPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARN---CMNRSEQV 66
Query: 94 LTRHPCPQCSRDFATVKILKTHLKTHEG-IIYPCPECDKTFLSTSGLREHR-KVHAG 148
T C C F L+ H+ +H G + Y C C + F+ L+ H K+H+G
Sbjct: 67 FT---CSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSG 120
Score = 41.2 bits (95), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 49/113 (43%), Gaps = 8/113 (7%)
Query: 171 ASHNGVQHACDQCDRTFSCMPYLRQHQKLHSGIT-YSCPSCSKSFNRKDRYRMHLKLHQG 229
+ +GV+ C C + F YL+ H + H+G + CP C K + RK+ H +
Sbjct: 3 SGSSGVE--CPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCM 60
Query: 230 VRH----TCKECSKEFSNEYNLKNHMVLHDVRA-YVCELCARQFTRVDHFNHH 277
R TC C + F L+ HMV H Y C C++QF + H
Sbjct: 61 NRSEQVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSH 113
>pdb|2EBT|A Chain A, Solution Structure Of Three Tandem Repeats Of Zf-C2h2
Domains From Human Kruppel-Like Factor 5
Length = 100
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 44/78 (56%), Gaps = 4/78 (5%)
Query: 155 ACPREFSSEATMKAHVASHNGVQ-HAC--DQCDRTFSCMPYLRQHQKLHSGIT-YSCPSC 210
C + ++ + +KAH+ +H G + + C + CD F+ L +H + H+G + C C
Sbjct: 22 GCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVC 81
Query: 211 SKSFNRKDRYRMHLKLHQ 228
++SF+R D +H+K HQ
Sbjct: 82 NRSFSRSDHLALHMKRHQ 99
Score = 37.7 bits (86), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 35/79 (44%), Gaps = 4/79 (5%)
Query: 100 PQCSRDFATVKILKTHLKTHEG-IIYPC--PECDKTFLSTSGLREHRKVHAGVR-YICHA 155
P C++ + LK HL+TH G Y C CD F + L H + H G + + C
Sbjct: 21 PGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGV 80
Query: 156 CPREFSSEATMKAHVASHN 174
C R FS + H+ H
Sbjct: 81 CNRSFSRSDHLALHMKRHQ 99
Score = 37.0 bits (84), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 33/74 (44%), Gaps = 4/74 (5%)
Query: 208 PSCSKSFNRKDRYRMHLKLHQGVRH---TCKECSKEFSNEYNLKNHMVLH-DVRAYVCEL 263
P C+K + + + HL+ H G + T + C F+ L H H + + C +
Sbjct: 21 PGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGV 80
Query: 264 CARQFTRVDHFNHH 277
C R F+R DH H
Sbjct: 81 CNRSFSRSDHLALH 94
Score = 32.7 bits (73), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 37/83 (44%), Gaps = 6/83 (7%)
Query: 178 HACD--QCDRTFSCMPYLRQHQKLHSGIT-YSC--PSCSKSFNRKDRYRMHLKLHQGVR- 231
H CD C + ++ +L+ H + H+G Y C C F R D H + H G +
Sbjct: 16 HYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKP 75
Query: 232 HTCKECSKEFSNEYNLKNHMVLH 254
C C++ FS +L HM H
Sbjct: 76 FQCGVCNRSFSRSDHLALHMKRH 98
>pdb|2EE8|A Chain A, Solution Structure Of Three Zf-C2h2 Domains From Mouse
Protein Odd-Skipped-Related 2 Splicing Isoform 2
Length = 106
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 234 CKECSKEFSNEYNLKNHMVLH-DVRAYVCELCARQFTRVDHFNHHRRLQHDPEEFE 288
CK C + F+ YNL H H D R Y C++C + F R DH HR + + F+
Sbjct: 20 CKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFK 75
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 39/87 (44%), Gaps = 2/87 (2%)
Query: 170 VASHNGVQHACDQCDRTFSCMPYLRQHQKLHSGI-TYSCPSCSKSFNRKDRYRMHLKLHQ 228
+ S + C C R F+ L H++ H+ Y+C C K+F R+D R H +H
Sbjct: 10 LPSKTKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHS 69
Query: 229 GVR-HTCKECSKEFSNEYNLKNHMVLH 254
+ C+EC K F L H LH
Sbjct: 70 KEKPFKCQECGKGFCQSRTLAVHKTLH 96
Score = 35.0 bits (79), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 33/77 (42%), Gaps = 2/77 (2%)
Query: 99 CPQCSRDFATVKILKTHLKTH-EGIIYPCPECDKTFLSTSGLREHRKVHAGVR-YICHAC 156
C C R F L H +TH + Y C C K F LR+HR +H+ + + C C
Sbjct: 20 CKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQEC 79
Query: 157 PREFSSEATMKAHVASH 173
+ F T+ H H
Sbjct: 80 GKGFCQSRTLAVHKTLH 96
>pdb|2COT|A Chain A, Solution Structure Of The First And Second Zf-C2h2 Domain
Of Zinc Finger Protein 435
Length = 77
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 96 RHPCPQCSRDFATVKILKTHLKTHEGII-YPCPECDKTFLSTSGLREHRKVHAG 148
R+ C +C + F+ L H +TH G Y C EC K F+ S L H +VH G
Sbjct: 18 RYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTG 71
Score = 37.0 bits (84), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 124 YPCPECDKTFLSTSGLREHRKVHAGVR-YICHACPREFSSEATMKAHVASHNG 175
Y C EC K+F +S L +HR+ H G + Y C C + F + + H H G
Sbjct: 19 YKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTG 71
Score = 35.8 bits (81), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 150 RYICHACPREFSSEATMKAHVASHNGVQ-HACDQCDRTFSCMPYLRQHQKLHSG 202
RY C C + FS + + H +H G + + CD+C + F +L H ++H+G
Sbjct: 18 RYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTG 71
Score = 34.3 bits (77), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 177 QHACDQCDRTFSCMPYLRQHQKLHSGIT-YSCPSCSKSFNRKDRYRMHLKLHQG 229
++ CD+C ++FS L +H++ H+G Y C C K+F ++ H ++H G
Sbjct: 18 RYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTG 71
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Query: 231 RHTCKECSKEFSNEYNLKNHMVLH-DVRAYVCELCARQFTRVDHFNHHRRL 280
R+ C EC K FS+ +L H H + Y C+ C + F + H H R+
Sbjct: 18 RYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRV 68
Score = 32.3 bits (72), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 32 RHPCPQCSRDFATVKILKTHLKTHEGII-YPCPECDKTFL 70
R+ C +C + F+ L H +TH G Y C EC K F+
Sbjct: 18 RYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFI 57
Score = 30.8 bits (68), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Query: 205 YSCPSCSKSFNRKDRYRMHLKLHQGVR-HTCKECSKEFSNEYNLKNHMVLH 254
Y C C KSF+ H + H G + + C EC K F +L H +H
Sbjct: 19 YKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVH 69
>pdb|2LV2|A Chain A, Solution Nmr Structure Of C2h2-Type Zinc-Fingers 4 And 5
From Human Insulinoma-Associated Protein 1 (Fragment
424-497), Northeast Structural Genomics Consortium
Target Hr7614b
Length = 85
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Query: 82 GRAVYLSRMSTTLTRHPCPQCSRDFATVKILKTHLK-THEGIIYPCPECDKTFLSTSGLR 140
G + +S + H CP C FA+ + HL+ H ++PC C TF S+ GL
Sbjct: 14 GEGAGVLGLSASAECHLCPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLT 73
Query: 141 EH 142
H
Sbjct: 74 RH 75
Score = 31.6 bits (70), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Query: 33 HPCPQCSRDFATVKILKTHLK-THEGIIYPCPECDKTFLST 72
H CP C FA+ + HL+ H ++PC C TF S+
Sbjct: 29 HLCPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSS 69
Score = 29.3 bits (64), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Query: 126 CPECDKTFLSTSGLREH-RKVHAGVRYICHACPREFSSEATMKAHV 170
CP C ++F S H R +HA + C CP F S + H+
Sbjct: 31 CPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRHI 76
Score = 28.9 bits (63), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
Query: 207 CPSCSKSFNRKDRYRMHLK-LHQGVRHTCKECSKEFSNEYNLKNHM 251
CP C +SF K HL+ LH CK C F + L H+
Sbjct: 31 CPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRHI 76
>pdb|1X6E|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain Of
Human Zinc Finger Protein 24
Length = 72
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 205 YSCPSCSKSFNRKDRYRMHLKLHQGVR-HTCKECSKEFSNEYNLKNHMVLH 254
Y C C K+F+R H ++H G + + C EC K FS L NH +H
Sbjct: 15 YGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIH 65
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 99 CPQCSRDFATVKILKTHLKTHEG-IIYPCPECDKTFLSTSGLREHRKVH 146
C +C + F+ IL H + H G Y C EC K F SGL H+++H
Sbjct: 17 CVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIH 65
Score = 36.2 bits (82), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 178 HACDQCDRTFSCMPYLRQHQKLHSGIT-YSCPSCSKSFNRKDRYRMHLKLH 227
+ C +C + FS L QHQ++H+G Y C C K+F++ H ++H
Sbjct: 15 YGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIH 65
Score = 35.0 bits (79), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 124 YPCPECDKTFLSTSGLREHRKVHAGVR-YICHACPREFSSEATMKAH 169
Y C EC K F +S L +H++VH G + Y C C + FS + + H
Sbjct: 15 YGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINH 61
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 151 YICHACPREFSSEATMKAHVASHNGVQ-HACDQCDRTFSCMPYLRQHQKLHS 201
Y C C + FS + + H H G + + C +C + FS L HQ++H+
Sbjct: 15 YGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHT 66
Score = 28.1 bits (61), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 35 CPQCSRDFATVKILKTHLKTHEG-IIYPCPECDKTF 69
C +C + F+ IL H + H G Y C EC K F
Sbjct: 17 CVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAF 52
>pdb|2RPC|A Chain A, Solution Structure Of The Tandem Zf-C2h2 Domains From The
Human Zinc Finger Protein Zic 3
Length = 155
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 39/81 (48%), Gaps = 6/81 (7%)
Query: 99 CPQCSRDFATVKILKTHLKTHEG-IIYPCP--ECDKTFLSTSGLREHRKVHAGVR-YIC- 153
CP+ + F L H++ H G +PCP C K F + L+ H++ H G + + C
Sbjct: 65 CPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCE 124
Query: 154 -HACPREFSSEATMKAHVASH 173
C R F++ + K H+ H
Sbjct: 125 FEGCDRRFANSSDRKKHMHVH 145
Score = 35.4 bits (80), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 56/129 (43%), Gaps = 26/129 (20%)
Query: 34 PCPQCSRDFATVKILKTHLKTHEGIIYP-----------CPECDKTFLSTLTGTPQGARG 82
P C R F+T+ L TH+ T E + P CP K+F A+
Sbjct: 27 PKKSCDRTFSTMHELVTHV-TMEHVGGPEQNNHVCYWEECPREGKSFK---------AKY 76
Query: 83 RAVYLSRMSTTLTRHPCP--QCSRDFATVKILKTHLKTHEG-IIYPC--PECDKTFLSTS 137
+ V R+ T PCP C + FA + LK H +TH G + C CD+ F ++S
Sbjct: 77 KLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSS 136
Query: 138 GLREHRKVH 146
++H VH
Sbjct: 137 DRKKHMHVH 145
Score = 35.4 bits (80), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 49/107 (45%), Gaps = 12/107 (11%)
Query: 159 EFSSEATMKAHVASHNGVQHAC--DQCDR---TFSCMPYLRQHQKLHSG-ITYSCP--SC 210
E + TM+ HV H C ++C R +F L H ++H+G + CP C
Sbjct: 40 ELVTHVTME-HVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGC 98
Query: 211 SKSFNRKDRYRMHLKLHQGVRH---TCKECSKEFSNEYNLKNHMVLH 254
K F R + ++H + H G + + C + F+N + K HM +H
Sbjct: 99 GKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVH 145
>pdb|2WBS|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound
To Its Target Dna
Length = 89
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 41/77 (53%), Gaps = 4/77 (5%)
Query: 155 ACPREFSSEATMKAHVASHNGVQ-HACDQ--CDRTFSCMPYLRQHQKLHSG-ITYSCPSC 210
C + ++ + +KAH+ +H G + + CD C F+ L +H + H+G + C C
Sbjct: 12 GCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKC 71
Query: 211 SKSFNRKDRYRMHLKLH 227
++F+R D +H+K H
Sbjct: 72 DRAFSRSDHLALHMKRH 88
Score = 36.6 bits (83), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 39/85 (45%), Gaps = 6/85 (7%)
Query: 176 VQHACD--QCDRTFSCMPYLRQHQKLHSGIT-YSCP--SCSKSFNRKDRYRMHLKLHQGV 230
H CD C +T++ +L+ H + H+G Y C C F R D H + H G
Sbjct: 4 ATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGH 63
Query: 231 R-HTCKECSKEFSNEYNLKNHMVLH 254
R C++C + FS +L HM H
Sbjct: 64 RPFQCQKCDRAFSRSDHLALHMKRH 88
Score = 35.8 bits (81), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 36/76 (47%), Gaps = 4/76 (5%)
Query: 129 CDKTFLSTSGLREHRKVHAGVR-YIC--HACPREFSSEATMKAHVASHNGVQ-HACDQCD 184
C KT+ +S L+ H + H G + Y C C +F+ + H H G + C +CD
Sbjct: 13 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCD 72
Query: 185 RTFSCMPYLRQHQKLH 200
R FS +L H K H
Sbjct: 73 RAFSRSDHLALHMKRH 88
Score = 33.1 bits (74), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 32/76 (42%), Gaps = 4/76 (5%)
Query: 102 CSRDFATVKILKTHLKTHEGII-YPCPE--CDKTFLSTSGLREHRKVHAGVR-YICHACP 157
C + + LK HL+TH G Y C C F + L H + H G R + C C
Sbjct: 13 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCD 72
Query: 158 REFSSEATMKAHVASH 173
R FS + H+ H
Sbjct: 73 RAFSRSDHLALHMKRH 88
Score = 32.0 bits (71), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 37/81 (45%), Gaps = 6/81 (7%)
Query: 203 ITYSC--PSCSKSFNRKDRYRMHLKLHQGVR-HTCKE--CSKEFSNEYNLKNHMVLHDV- 256
T++C C K++ + + HL+ H G + + C C +F+ L H H
Sbjct: 4 ATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGH 63
Query: 257 RAYVCELCARQFTRVDHFNHH 277
R + C+ C R F+R DH H
Sbjct: 64 RPFQCQKCDRAFSRSDHLALH 84
>pdb|2WBU|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound
To Its Target Dna
Length = 90
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 41/77 (53%), Gaps = 4/77 (5%)
Query: 155 ACPREFSSEATMKAHVASHNGVQ-HACDQ--CDRTFSCMPYLRQHQKLHSG-ITYSCPSC 210
C + ++ + +KAH+ +H G + + CD C F+ L +H + H+G + C C
Sbjct: 13 GCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKC 72
Query: 211 SKSFNRKDRYRMHLKLH 227
++F+R D +H+K H
Sbjct: 73 DRAFSRSDHLALHMKRH 89
Score = 36.6 bits (83), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 39/85 (45%), Gaps = 6/85 (7%)
Query: 176 VQHACD--QCDRTFSCMPYLRQHQKLHSGIT-YSCP--SCSKSFNRKDRYRMHLKLHQGV 230
H CD C +T++ +L+ H + H+G Y C C F R D H + H G
Sbjct: 5 ATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGH 64
Query: 231 R-HTCKECSKEFSNEYNLKNHMVLH 254
R C++C + FS +L HM H
Sbjct: 65 RPFQCQKCDRAFSRSDHLALHMKRH 89
Score = 35.4 bits (80), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 36/76 (47%), Gaps = 4/76 (5%)
Query: 129 CDKTFLSTSGLREHRKVHAGVR-YIC--HACPREFSSEATMKAHVASHNGVQ-HACDQCD 184
C KT+ +S L+ H + H G + Y C C +F+ + H H G + C +CD
Sbjct: 14 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCD 73
Query: 185 RTFSCMPYLRQHQKLH 200
R FS +L H K H
Sbjct: 74 RAFSRSDHLALHMKRH 89
Score = 33.1 bits (74), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 32/76 (42%), Gaps = 4/76 (5%)
Query: 102 CSRDFATVKILKTHLKTHEGII-YPCPE--CDKTFLSTSGLREHRKVHAGVR-YICHACP 157
C + + LK HL+TH G Y C C F + L H + H G R + C C
Sbjct: 14 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCD 73
Query: 158 REFSSEATMKAHVASH 173
R FS + H+ H
Sbjct: 74 RAFSRSDHLALHMKRH 89
Score = 32.0 bits (71), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 37/81 (45%), Gaps = 6/81 (7%)
Query: 203 ITYSC--PSCSKSFNRKDRYRMHLKLHQGVR-HTCKE--CSKEFSNEYNLKNHMVLHDV- 256
T++C C K++ + + HL+ H G + + C C +F+ L H H
Sbjct: 5 ATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGH 64
Query: 257 RAYVCELCARQFTRVDHFNHH 277
R + C+ C R F+R DH H
Sbjct: 65 RPFQCQKCDRAFSRSDHLALH 85
>pdb|2LT7|A Chain A, Solution Nmr Structure Of Kaiso Zinc Finger Dna Binding
Domain In Complex With Kaiso Binding Site Dna
pdb|4F6M|A Chain A, Crystal Structure Of Kaiso Zinc Finger Dna Binding Domain
In Complex With Kaiso Binding Site Dna
pdb|4F6N|A Chain A, Crystal Structure Of Kaiso Zinc Finger Dna Binding Protein
In Complex With Methylated Cpg Site Dna
Length = 133
Score = 37.0 bits (84), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 2/72 (2%)
Query: 145 VHAGVRYICHACPREFSSEATMKAHVASHNG-VQHACDQCDRTFSCMPYLRQHQKLHSGI 203
V V YIC C R + +++ H H+ ++ C C++ F Y +H+ H+G
Sbjct: 17 VDGRVYYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGE 76
Query: 204 -TYSCPSCSKSF 214
Y C +C KSF
Sbjct: 77 RRYQCLACGKSF 88
Score = 35.8 bits (81), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 36/78 (46%), Gaps = 2/78 (2%)
Query: 176 VQHACDQCDRTFSCMPYLRQHQKLHSG-ITYSCPSCSKSFNRKDRYRMHLKLHQGV-RHT 233
V + C C R++ C+ LR+H +HS Y C C K F + H H G R+
Sbjct: 21 VYYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQ 80
Query: 234 CKECSKEFSNEYNLKNHM 251
C C K F N + +H+
Sbjct: 81 CLACGKSFINYQFMSSHI 98
Score = 31.6 bits (70), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 19/79 (24%), Positives = 35/79 (44%), Gaps = 2/79 (2%)
Query: 122 IIYPCPECDKTFLSTSGLREHRKVHAG-VRYICHACPREFSSEATMKAHVASHNGV-QHA 179
+ Y C C ++++ + LR H +H+ +Y C C + F H H G ++
Sbjct: 21 VYYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQ 80
Query: 180 CDQCDRTFSCMPYLRQHQK 198
C C ++F ++ H K
Sbjct: 81 CLACGKSFINYQFMSSHIK 99
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/85 (23%), Positives = 31/85 (36%), Gaps = 10/85 (11%)
Query: 35 CPQCSRDFATVKILKTHLKTHEG-IIYPCPECDKTFLSTLTGTPQGARGRAVYLSRMSTT 93
C C R + + L+ H H YPC C+K F T T
Sbjct: 25 CIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIH---------HTG 75
Query: 94 LTRHPCPQCSRDFATVKILKTHLKT 118
R+ C C + F + + +H+K+
Sbjct: 76 ERRYQCLACGKSFINYQFMSSHIKS 100
>pdb|2LCE|A Chain A, Chemical Shift Assignment Of Hr4436b From Homo Sapiens,
Northeast Structural Genomics Consortium
Length = 74
Score = 36.6 bits (83), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Query: 124 YPCPECDKTFLSTSGLREHRKVHAGVR-YICHACPREFSSEATMKAHVASHNG 175
Y C C +F L H+ VH G + Y C+ C +F+ A +K H H+G
Sbjct: 18 YKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSG 70
Score = 35.4 bits (80), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Query: 178 HACDQCDRTFSCMPYLRQHQKLHSG-ITYSCPSCSKSFNRKDRYRMHLKLHQGVR 231
+ CD+C +F L H+ +H+G Y C C FNR + H ++H G +
Sbjct: 18 YKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEK 72
Score = 32.0 bits (71), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Query: 232 HTCKECSKEFSNEYNLKNHMVLH-DVRAYVCELCARQFTRVDHFNHHRRL 280
+ C C F + NL +H +H + Y C +C QF R + H R+
Sbjct: 18 YKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRI 67
>pdb|2DLK|A Chain A, Solution Structure Of The First And The Second Zf-C2h2
Domains Of Zinc Finger Protein 692
Length = 79
Score = 36.2 bits (82), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 30/54 (55%), Gaps = 6/54 (11%)
Query: 183 CDRTFSCMPYLRQHQK---LHSGITYSCP--SCSKSFNRKDRYRMHLKLHQGVR 231
C R FS YL H+K +H ++SCP +C KSFN K + H+KLH R
Sbjct: 15 CGRIFSNRQYLNHHKKYQHIHQ-KSFSCPEPACGKSFNFKKHLKEHMKLHSDTR 67
Score = 35.4 bits (80), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 37/71 (52%), Gaps = 7/71 (9%)
Query: 201 SGITYSCPSCSKSFNRKDRYRMHLKLHQGVRH---TCKE--CSKEFSNEYNLKNHMVLH- 254
SG+ P C + F+ + +Y H K +Q + +C E C K F+ + +LK HM LH
Sbjct: 6 SGMPCDFPGCGRIFSNR-QYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHS 64
Query: 255 DVRAYVCELCA 265
D R Y+CE
Sbjct: 65 DTRDYICEFSG 75
Score = 33.5 bits (75), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 38/82 (46%), Gaps = 12/82 (14%)
Query: 91 STTLTRHPC--PQCSRDFATVKILKTHLKTH----EGIIYPCPECDKTFLSTSGLREHRK 144
S+ + PC P C R F+ + L H K + P P C K+F L+EH K
Sbjct: 2 SSGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMK 61
Query: 145 VHAGVR-YICHACPREFSSEAT 165
+H+ R YIC EFS ++
Sbjct: 62 LHSDTRDYIC-----EFSGPSS 78
>pdb|2EOY|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
557- 589) Of Human Zinc Finger Protein 473
Length = 46
Score = 35.8 bits (81), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 22/30 (73%)
Query: 180 CDQCDRTFSCMPYLRQHQKLHSGITYSCPS 209
C++C++TFSC YL QH+++H+ S PS
Sbjct: 15 CNKCEKTFSCSKYLTQHERIHTRGVKSGPS 44
>pdb|1LLM|C Chain C, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
pdb|1LLM|D Chain D, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
Length = 88
Score = 35.8 bits (81), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 234 CKECSKEFSNEYNLKNHMVLH-DVRAYVCELCARQFTRVDHFNHHRRLQH 282
C+ C + FS +L H+ H + + C++C R+F R D HR +QH
Sbjct: 6 CRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQH 55
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 33/74 (44%), Gaps = 1/74 (1%)
Query: 180 CDQCDRTFSCMPYLRQHQKLHSGIT-YSCPSCSKSFNRKDRYRMHLKLHQGVRHTCKECS 238
C C R FS +L H + H+G ++C C + F R D + H + + +
Sbjct: 6 CRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQHILPILEDKVE 65
Query: 239 KEFSNEYNLKNHMV 252
+ S Y+L+N +
Sbjct: 66 ELLSKNYHLENEVA 79
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Query: 151 YICHACPREFSSEATMKAHVASHNGVQ-HACDQCDRTFSCMPYLRQHQKLH 200
+ C C R FS + H+ +H G + ACD C R F+ ++H+ +
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQ 54
Score = 28.5 bits (62), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 99 CPQCSRDFATVKILKTHLKTHEGII-YPCPECDKTFLSTSGLREHRKVH 146
C C R+F+ L TH++TH G + C C + F + + HR +
Sbjct: 6 CRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQ 54
>pdb|2ADR|A Chain A, Adr1 Dna-Binding Domain From Saccharomyces Cerevisiae,
Nmr, 25 Structures
Length = 60
Score = 35.8 bits (81), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Query: 151 YICHACPREFSSEATMKAHVASH-NGVQHACDQCDRTFSCMPYLRQH-QKLHSG 202
++C C R F+ + +K H SH N + C C+R F+ L +H QK+HSG
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56
Score = 32.0 bits (71), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Query: 99 CPQCSRDFATVKILKTHLKTHEG-IIYPCPECDKTFLSTSGLREH-RKVHAG 148
C C+R FA + LK H ++H YPC C++ F L H +K+H+G
Sbjct: 5 CEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56
Score = 31.2 bits (69), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 233 TCKECSKEFSNEYNLKNHMVLH-DVRAYVCELCARQFTRVD 272
C+ C++ F+ + +LK H H + + Y C LC R FTR D
Sbjct: 4 VCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRD 44
Score = 31.2 bits (69), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Query: 179 ACDQCDRTFSCMPYLRQHQKLHSGIT-YSCPSCSKSFNRKDRYRMHL-KLHQG 229
C+ C R F+ +L++H + H+ Y C C+++F R+D H K+H G
Sbjct: 4 VCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56
Score = 28.1 bits (61), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 35 CPQCSRDFATVKILKTHLKTHEG-IIYPCPECDKTF 69
C C+R FA + LK H ++H YPC C++ F
Sbjct: 5 CEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAF 40
>pdb|2GLI|A Chain A, Five-Finger GliDNA COMPLEX
Length = 155
Score = 35.4 bits (80), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 61/137 (44%), Gaps = 25/137 (18%)
Query: 155 ACPREFSSEATMKAHVAS------------HNGVQHACDQCDRTFSCMPYLRQHQKLHSG 202
C +EF S+ + H+ S H G C + R F L H + H+G
Sbjct: 8 GCSQEFDSQEQLVHHINSEHIHGERKEFVCHWG---GCSRELRPFKAQYMLVVHMRRHTG 64
Query: 203 IT-YSC--PSCSKSFNRKDRYRMHLKLHQGVR-HTCKE--CSKEFSNEYNLKNHM--VLH 254
+ C C KS++R + + HL+ H G + + C+ CSK FSN + H
Sbjct: 65 EKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHS 124
Query: 255 DVRAYVCEL--CARQFT 269
+ + YVC+L C +++T
Sbjct: 125 NEKPYVCKLPGCTKRYT 141
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 41/89 (46%), Gaps = 13/89 (14%)
Query: 38 CSRDFATVKILKTHLKTHEG-IIYPCPE--CDKTFLSTLTGTPQGARGRAVYLSRMSTTL 94
C + ++ ++ LKTHL++H G Y C C K F A RA + +R +
Sbjct: 75 CRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAF--------SNASDRAKHQNRTHSNE 126
Query: 95 TRHPC--PQCSRDFATVKILKTHLKTHEG 121
+ C P C++ + L+ H+KT G
Sbjct: 127 KPYVCKLPGCTKRYTDPSSLRKHVKTVHG 155
>pdb|1F2I|G Chain G, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|H Chain H, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|I Chain I, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|J Chain J, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|K Chain K, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|L Chain L, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
Length = 73
Score = 34.3 bits (77), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
Query: 205 YSCP--SCSKSFNRKDRYRMHLKLHQGVR-HTCKECSKEFSNEYNLKNHMVLH 254
Y+CP SC + F+R D H+++H G + C+ C + FS +L H+ H
Sbjct: 20 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 72
Score = 32.7 bits (73), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Query: 124 YPCP--ECDKTFLSTSGLREHRKVHAGVR-YICHACPREFSSEATMKAHVASH 173
Y CP CD+ F + L H ++H G + + C C R FS + H+ +H
Sbjct: 20 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 72
Score = 32.0 bits (71), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 181 DQCDRTFSCMPYLRQHQKLHSG-ITYSCPSCSKSFNRKDRYRMHLKLH 227
+ CDR FS L +H ++H+G + C C ++F+R D H++ H
Sbjct: 25 ESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 72
>pdb|2EOV|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
519- 551) Of Human Zinc Finger Protein 484
Length = 46
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 17/29 (58%)
Query: 205 YSCPSCSKSFNRKDRYRMHLKLHQGVRHT 233
Y C C KSF K R R+H K H G RH+
Sbjct: 13 YKCSDCGKSFTWKSRLRIHQKCHTGERHS 41
Score = 28.9 bits (63), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 178 HACDQCDRTFSCMPYLRQHQKLHSGITYSCPS 209
+ C C ++F+ LR HQK H+G +S PS
Sbjct: 13 YKCSDCGKSFTWKSRLRIHQKCHTGERHSGPS 44
Score = 28.5 bits (62), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 124 YPCPECDKTFLSTSGLREHRKVHAGVRY 151
Y C +C K+F S LR H+K H G R+
Sbjct: 13 YKCSDCGKSFTWKSRLRIHQKCHTGERH 40
>pdb|1UN6|B Chain B, The Crystal Structure Of A Zinc Finger - Rna Complex
Reveals Two Modes Of Molecular Recognition
pdb|1UN6|C Chain C, The Crystal Structure Of A Zinc Finger - Rna Complex
Reveals Two Modes Of Molecular Recognition
pdb|1UN6|D Chain D, The Crystal Structure Of A Zinc Finger - Rna Complex
Reveals Two Modes Of Molecular Recognition
pdb|2HGH|A Chain A, Transcription Factor Iiia Zinc Fingers 4-6 Bound To 5s
Rrna 55mer (Nmr Structure)
Length = 87
Score = 33.5 bits (75), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
Query: 102 CSRDFATVKILKTHLKTH-EGIIYPCPE--CDKTFLSTSGLREHRKVHAG 148
C + F LK H +H + + Y CP CDK F S L+ H KVHAG
Sbjct: 9 CGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG 58
Score = 31.2 bits (69), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 5/57 (8%)
Query: 151 YICH--ACPREFSSEATMKAHVASH-NGVQHAC--DQCDRTFSCMPYLRQHQKLHSG 202
Y+CH C + F +K H SH + + C + CD+ FS L++H+K+H+G
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG 58
>pdb|4GZN|C Chain C, Mouse Zfp57 Zinc Fingers In Complex With Methylated Dna
Length = 60
Score = 33.5 bits (75), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 180 CDQCDRTFSCMPYLRQHQKLHSGI-TYSCPSCSKSFNRKDRYRMHLKLHQ 228
C+ C +T+ L +H++ H G SCP C K F + HLK+HQ
Sbjct: 7 CNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVHQ 56
Score = 31.6 bits (70), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 126 CPECDKTFLSTSGLREHRKVHAGVR-YICHACPREFSSEATMKAHVASH 173
C C KT+ SGL HR+ H G R C C + F ++ + H+ H
Sbjct: 7 CNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVH 55
>pdb|2EM5|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
768- 800) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 33.5 bits (75), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 20/32 (62%)
Query: 178 HACDQCDRTFSCMPYLRQHQKLHSGITYSCPS 209
H C +C R F+ +L QHQ++H+G S PS
Sbjct: 13 HQCHECGRGFTLKSHLNQHQRIHTGEKPSGPS 44
>pdb|2J7J|A Chain A, Invariance Of The Zinc Finger Module: A Comparison Of The
Free Structure With Those In Nucleic-Acid Complexes
Length = 85
Score = 33.5 bits (75), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Query: 101 QCSRDFATVKILKTHLKTH-EGIIYPCPE--CDKTFLSTSGLREHRKVHAG 148
C + F LK H +H + + Y CP CDK F S L+ H KVHAG
Sbjct: 8 NCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG 58
Score = 31.2 bits (69), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 5/57 (8%)
Query: 151 YICH--ACPREFSSEATMKAHVASH-NGVQHAC--DQCDRTFSCMPYLRQHQKLHSG 202
Y+CH C + F +K H SH + + C + CD+ FS L++H+K+H+G
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG 58
>pdb|2WBT|A Chain A, The Structure Of A Double C2h2 Zinc Finger Protein From A
Hyperthermophilic Archaeal Virus In The Absence Of Dna
pdb|2WBT|B Chain B, The Structure Of A Double C2h2 Zinc Finger Protein From A
Hyperthermophilic Archaeal Virus In The Absence Of Dna
Length = 129
Score = 32.7 bits (73), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 36/78 (46%), Gaps = 4/78 (5%)
Query: 67 KTFLSTLTGTPQGARGRAVYLSRM--STTLTRHPCPQCSRDFATVKILKTHLKTHEGIIY 124
+ + TL PQ + YL R+ S +++ CP C F++ LK H++ E
Sbjct: 44 RAIVKTLIHNPQ-LLDESSYLYRLLASKAISQFVCPLCLMPFSSSVSLKQHIRYTEH-TK 101
Query: 125 PCPECDKTFLSTSGLREH 142
CP C K F ST +H
Sbjct: 102 VCPVCKKEFTSTDSALDH 119
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 49/113 (43%), Gaps = 4/113 (3%)
Query: 113 KTHLKTHEGI-IYPCPECDKTFLSTSGLREHRKVHAGVRYICHACPREFSSEATMKAHVA 171
K +L H+GI I+ E K + + + R + A V+ + H P+ + + +A
Sbjct: 11 KKYLSNHKGIFIHVTLEELKRYHQLTP-EQKRLIRAIVKTLIHN-PQLLDESSYLYRLLA 68
Query: 172 SHNGVQHACDQCDRTFSCMPYLRQHQKLHSGITYSCPSCSKSFNRKDRYRMHL 224
S Q C C FS L+QH + ++ T CP C K F D H+
Sbjct: 69 SKAISQFVCPLCLMPFSSSVSLKQHIR-YTEHTKVCPVCKKEFTSTDSALDHV 120
>pdb|2EMA|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
312- 344) Of Human Zinc Finger Protein 347
Length = 46
Score = 32.3 bits (72), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 20/32 (62%)
Query: 178 HACDQCDRTFSCMPYLRQHQKLHSGITYSCPS 209
+ C++C + FS L QHQK+H+G S PS
Sbjct: 13 YKCNECGKVFSRNSQLSQHQKIHTGEKPSGPS 44
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 124 YPCPECDKTFLSTSGLREHRKVHAGVR 150
Y C EC K F S L +H+K+H G +
Sbjct: 13 YKCNECGKVFSRNSQLSQHQKIHTGEK 39
>pdb|2EMW|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
301- 331) Of Human Zinc Finger Protein 268
Length = 44
Score = 32.3 bits (72), Expect = 0.33, Method: Composition-based stats.
Identities = 13/32 (40%), Positives = 20/32 (62%)
Query: 178 HACDQCDRTFSCMPYLRQHQKLHSGITYSCPS 209
+ C++C + FS YL HQ++H+G S PS
Sbjct: 11 YGCNECGKDFSSKSYLIVHQRIHTGEKLSGPS 42
>pdb|2DRP|A Chain A, The Crystal Structure Of A Two Zinc-Finger Peptide Reveals
An Extension To The Rules For Zinc-FingerDNA RECOGNITION
pdb|2DRP|D Chain D, The Crystal Structure Of A Two Zinc-Finger Peptide Reveals
An Extension To The Rules For Zinc-FingerDNA RECOGNITION
Length = 66
Score = 32.3 bits (72), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Query: 234 CKECSKEFSNEYNLKNHMVL---HDVRAYVCELCARQFTRVDHFNHHRRLQH 282
CK CS+ +++ N H V +V+ Y C C ++FTR D+ H ++ H
Sbjct: 13 CKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIH 64
Score = 30.8 bits (68), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 7/52 (13%)
Query: 180 CDQCDRTFS-----CMPYLRQHQKLHSGITYSCPSCSKSFNRKDRYRMHLKL 226
C C R ++ C Y+ H++ + Y CP C K F RKD H+K+
Sbjct: 13 CKVCSRVYTHISNFCRHYVTSHKR--NVKVYPCPFCFKEFTRKDNMTAHVKI 62
>pdb|1TF3|A Chain A, Tfiiia Finger 1-3 Bound To Dna, Nmr, 22 Structures
Length = 92
Score = 32.0 bits (71), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 37/84 (44%), Gaps = 6/84 (7%)
Query: 100 PQCSRDFATVKILKTHLKTHEGII-YPCPE--CDKTFLSTSGLREHRKVHAGVR-YICHA 155
C + L+ HL H G +PC E C+K F S L H H G + + C +
Sbjct: 9 ADCGAAYNKNWKLQAHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDS 68
Query: 156 --CPREFSSEATMKAHVASHNGVQ 177
C F+++A MK H + ++
Sbjct: 69 DGCDLRFTTKANMKKHFNRFHNIK 92
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 42/90 (46%), Gaps = 8/90 (8%)
Query: 150 RYICH--ACPREFSSEATMKAHVASHNGVQ-HACDQ--CDRTFSCMPYLRQHQKLHSG-I 203
RYIC C ++ ++AH++ H G + C + C++ F+ + +L +H H+G
Sbjct: 3 RYICSFADCGAAYNKNWKLQAHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEK 62
Query: 204 TYSCPS--CSKSFNRKDRYRMHLKLHQGVR 231
++C S C F K + H ++
Sbjct: 63 NFTCDSDGCDLRFTTKANMKKHFNRFHNIK 92
>pdb|2EOH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
780- 812) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 32.0 bits (71), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 124 YPCPECDKTFLSTSGLREHRKVHAGVR 150
Y C EC KTF+ L +H++VH G R
Sbjct: 13 YECKECRKTFIQIGHLNQHKRVHTGER 39
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 21/32 (65%)
Query: 178 HACDQCDRTFSCMPYLRQHQKLHSGITYSCPS 209
+ C +C +TF + +L QH+++H+G S PS
Sbjct: 13 YECKECRKTFIQIGHLNQHKRVHTGERSSGPS 44
>pdb|2EPS|A Chain A, Solution Structure Of The 4th Zinc Finger Domain Of Zinc
Finger Protein 278
Length = 54
Score = 31.6 bits (70), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 257 RAYVCELCARQFTRVDHFNHHRRLQHDPEEFEK 289
+ Y+C+ C + F+R DH N H + H E K
Sbjct: 11 KPYICQSCGKGFSRPDHLNGHIKQVHTSERPHK 43
>pdb|2EMM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
544- 576) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 31.6 bits (70), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 21/32 (65%)
Query: 178 HACDQCDRTFSCMPYLRQHQKLHSGITYSCPS 209
H C++C ++F +L QHQ++H+G S PS
Sbjct: 13 HKCNECGKSFIQSAHLIQHQRIHTGEKPSGPS 44
>pdb|2EQ4|A Chain A, Solution Structure Of The 11th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 224
Length = 46
Score = 31.6 bits (70), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 21/32 (65%)
Query: 178 HACDQCDRTFSCMPYLRQHQKLHSGITYSCPS 209
+ C +C ++FS P L +H++LHSG S PS
Sbjct: 13 YNCKECGKSFSRAPCLLKHERLHSGEKPSGPS 44
>pdb|2EL4|A Chain A, Solution Structure Of The 15th Zf-C2h2 Domain From Human
Zinc Finger Protein 268
Length = 46
Score = 31.6 bits (70), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 19/32 (59%)
Query: 178 HACDQCDRTFSCMPYLRQHQKLHSGITYSCPS 209
+ C QC +TFS L HQ+ H+G+ S PS
Sbjct: 13 YGCSQCAKTFSLKSQLIVHQRSHTGVKPSGPS 44
>pdb|2EMC|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
641- 673) Of Human Zinc Finger Protein 473
Length = 46
Score = 31.6 bits (70), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 180 CDQCDRTFSCMPYLRQHQKLHSGITYSCPS 209
C++C +TFS +L +HQ +H+G S PS
Sbjct: 15 CNECGKTFSHSAHLSKHQLIHAGENPSGPS 44
>pdb|2EPQ|A Chain A, Solution Structure Of The Third Zinc Finger Domain Of Zinc
Finger Protein 278
Length = 45
Score = 31.2 bits (69), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 15/25 (60%)
Query: 205 YSCPSCSKSFNRKDRYRMHLKLHQG 229
YSCP C F RKDR H++ H G
Sbjct: 11 YSCPVCGLRFKRKDRMSYHVRSHDG 35
>pdb|2EOE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
508- 540) Of Human Zinc Finger Protein 347
Length = 46
Score = 31.2 bits (69), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 21/32 (65%)
Query: 178 HACDQCDRTFSCMPYLRQHQKLHSGITYSCPS 209
+ C++C + F+ +L HQ++H+G+ S PS
Sbjct: 13 YKCNECGKVFTQNSHLANHQRIHTGVKPSGPS 44
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 124 YPCPECDKTFLSTSGLREHRKVHAGVR 150
Y C EC K F S L H+++H GV+
Sbjct: 13 YKCNECGKVFTQNSHLANHQRIHTGVK 39
>pdb|2EN8|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
171- 203) Of Human Zinc Finger Protein 224
Length = 46
Score = 31.2 bits (69), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 19/32 (59%)
Query: 178 HACDQCDRTFSCMPYLRQHQKLHSGITYSCPS 209
H CD+C + F + LR HQ++H G S PS
Sbjct: 13 HTCDECGKNFCYISALRIHQRVHMGEKCSGPS 44
Score = 27.7 bits (60), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 126 CPECDKTFLSTSGLREHRKVHAGVR 150
C EC K F S LR H++VH G +
Sbjct: 15 CDECGKNFCYISALRIHQRVHMGEK 39
>pdb|2EOR|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
255- 287) Of Human Zinc Finger Protein 224
Length = 46
Score = 31.2 bits (69), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 124 YPCPECDKTFLSTSGLREHRKVHAGVR 150
Y C EC K F+ S L+EH+++H G +
Sbjct: 13 YNCEECGKAFIHDSQLQEHQRIHTGEK 39
>pdb|2EN6|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
887- 919) Of Human Zinc Finger Protein 268
Length = 46
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 178 HACDQCDRTFSCMPYLRQHQKLHSGITYSCPS 209
+ C++C +TFS L HQ+ H+G S PS
Sbjct: 13 YGCNECGKTFSQKSILSAHQRTHTGEKPSGPS 44
>pdb|2EL5|A Chain A, Solution Structure Of The 18th Zf-C2h2 Domain From Human
Zinc Finger Protein 268
Length = 42
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 205 YSCPSCSKSFNRKDRYRMHLKLHQG 229
Y C C K+FNRKD+ H + H G
Sbjct: 11 YECSECGKAFNRKDQLISHQRTHAG 35
>pdb|2ENH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
556- 588) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 18/30 (60%)
Query: 180 CDQCDRTFSCMPYLRQHQKLHSGITYSCPS 209
CD C + FS L QHQ++HSG S PS
Sbjct: 15 CDVCRKAFSHHASLTQHQRVHSGEKPSGPS 44
>pdb|2ENE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
592- 624) Of Human Zinc Finger Protein 347
Length = 46
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 20/32 (62%)
Query: 178 HACDQCDRTFSCMPYLRQHQKLHSGITYSCPS 209
+ C++C + F YL +HQ++H+G S PS
Sbjct: 13 YKCNECGKVFRHNSYLSRHQRIHTGEKPSGPS 44
>pdb|2EMK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
668- 700) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 20/32 (62%)
Query: 178 HACDQCDRTFSCMPYLRQHQKLHSGITYSCPS 209
+ C +C + FS +L QHQ++H+G S PS
Sbjct: 13 YECKECGKAFSQTTHLIQHQRVHTGEKPSGPS 44
Score = 28.5 bits (62), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 124 YPCPECDKTFLSTSGLREHRKVHAGVR 150
Y C EC K F T+ L +H++VH G +
Sbjct: 13 YECKECGKAFSQTTHLIQHQRVHTGEK 39
>pdb|2YTS|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
715- 747) Of Human Zinc Finger Protein 484
Length = 46
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 124 YPCPECDKTFLSTSGLREHRKVHAGVR 150
Y C EC K+F+ S L HR++H G +
Sbjct: 13 YICNECGKSFIQKSHLNRHRRIHTGEK 39
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 257 RAYVCELCARQFTRVDHFNHHRRL 280
+ Y+C C + F + H N HRR+
Sbjct: 11 KPYICNECGKSFIQKSHLNRHRRI 34
>pdb|2EQ3|A Chain A, Solution Structure Of The 17th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 178 HACDQCDRTFSCMPYLRQHQKLHSGITYSCPS 209
+ C+QC + FS L HQ +H+G S PS
Sbjct: 13 YECNQCGKAFSVRSSLTTHQAIHTGKKPSGPS 44
>pdb|2EOI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
329- 359) Of Human Zinc Finger Protein 268
Length = 44
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 19/32 (59%)
Query: 178 HACDQCDRTFSCMPYLRQHQKLHSGITYSCPS 209
H C +C +TFS L HQ++H+G S PS
Sbjct: 11 HECSECRKTFSFHSQLVIHQRIHTGENPSGPS 42
>pdb|2YTD|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
426- 458) Of Human Zinc Finger Protein 473
Length = 46
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 124 YPCPECDKTFLSTSGLREHRKVHAGVR 150
Y C EC K F + L EHR++H G R
Sbjct: 13 YKCSECGKAFHRHTHLNEHRRIHTGYR 39
>pdb|2EN9|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
415- 447) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 123 IYPCPECDKTFLSTSGLREHRKVHAGVR 150
++ C EC KTF +S L H+++H G +
Sbjct: 12 LFKCNECKKTFTQSSSLTVHQRIHTGEK 39
Score = 28.5 bits (62), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 180 CDQCDRTFSCMPYLRQHQKLHSGITYSCPS 209
C++C +TF+ L HQ++H+G S PS
Sbjct: 15 CNECKKTFTQSSSLTVHQRIHTGEKPSGPS 44
>pdb|2YTR|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
760- 792) Of Human Zinc Finger Protein 347
Length = 46
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 20/32 (62%)
Query: 178 HACDQCDRTFSCMPYLRQHQKLHSGITYSCPS 209
+ C++C + FS L +HQ++H+G S PS
Sbjct: 13 YKCNECGKAFSQTSKLARHQRIHTGEKPSGPS 44
Score = 28.9 bits (63), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 124 YPCPECDKTFLSTSGLREHRKVHAGVR 150
Y C EC K F TS L H+++H G +
Sbjct: 13 YKCNECGKAFSQTSKLARHQRIHTGEK 39
>pdb|2YRJ|A Chain A, Solution Structure Of The C2h2-Type Zinc Finger Domain
(781- 813) From Zinc Finger Protein 473
Length = 46
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 180 CDQCDRTFSCMPYLRQHQKLHSGITYSCPS 209
C +C + F+ L QHQ++H+G S PS
Sbjct: 15 CGECGKAFAQKANLTQHQRIHTGEKPSGPS 44
Score = 27.3 bits (59), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 124 YPCPECDKTFLSTSGLREHRKVHAGVR 150
Y C EC K F + L +H+++H G +
Sbjct: 13 YRCGECGKAFAQKANLTQHQRIHTGEK 39
>pdb|2EQ2|A Chain A, Solution Structure Of The 16th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 124 YPCPECDKTFLSTSGLREHRKVHAGVR 150
Y C EC K F TS L H++VH G +
Sbjct: 13 YQCNECGKAFSQTSKLARHQRVHTGEK 39
Score = 28.9 bits (63), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 20/32 (62%)
Query: 178 HACDQCDRTFSCMPYLRQHQKLHSGITYSCPS 209
+ C++C + FS L +HQ++H+G S PS
Sbjct: 13 YQCNECGKAFSQTSKLARHQRVHTGEKPSGPS 44
>pdb|2EMF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
379- 411) Of Human Zinc Finger Protein 484
Length = 46
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 205 YSCPSCSKSFNRKDRYRMHLKLHQGVR 231
+ C C K+F RK MH K+H G +
Sbjct: 13 FECTECGKAFTRKSTLSMHQKIHTGEK 39
Score = 27.7 bits (60), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 180 CDQCDRTFSCMPYLRQHQKLHSGITYSCPS 209
C +C + F+ L HQK+H+G S PS
Sbjct: 15 CTECGKAFTRKSTLSMHQKIHTGEKPSGPS 44
>pdb|2YTO|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
659- 691) Of Human Zinc Finger Protein 484
Length = 46
Score = 29.3 bits (64), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 205 YSCPSCSKSFNRKDRYRMHLKLHQGVRHT 233
Y C C K+F RK +H + H G RH+
Sbjct: 13 YKCSDCGKAFTRKSGLHIHQQSHTGERHS 41
Score = 28.1 bits (61), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 124 YPCPECDKTFLSTSGLREHRKVHAGVRY 151
Y C +C K F SGL H++ H G R+
Sbjct: 13 YKCSDCGKAFTRKSGLHIHQQSHTGERH 40
>pdb|2EOP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
719- 751) Of Human Zinc Finger Protein 268
Length = 46
Score = 29.3 bits (64), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 178 HACDQCDRTFSCMPYLRQHQKLHSGITYSCPS 209
H C +C ++FS L HQ++H+G S PS
Sbjct: 13 HECRECGKSFSFNSQLIVHQRIHTGENPSGPS 44
>pdb|2YU8|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
648- 680) Of Human Zinc Finger Protein 347
Length = 46
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 15/27 (55%)
Query: 124 YPCPECDKTFLSTSGLREHRKVHAGVR 150
Y C EC K F S L HR+VH G +
Sbjct: 13 YKCNECGKVFTQNSHLARHRRVHTGGK 39
>pdb|2YRH|A Chain A, Solution Structure Of The C2h2-Type Zinc Finger Domain
(699- 729) From Zinc Finger Protein 473
Length = 44
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 180 CDQCDRTFSCMPYLRQHQKLHSGITYSCPS 209
C++C +TF L +HQ++HSG S PS
Sbjct: 13 CNECGKTFRQSSCLSKHQRIHSGEKPSGPS 42
Score = 27.3 bits (59), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 18/25 (72%)
Query: 126 CPECDKTFLSTSGLREHRKVHAGVR 150
C EC KTF +S L +H+++H+G +
Sbjct: 13 CNECGKTFRQSSCLSKHQRIHSGEK 37
>pdb|2YTQ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
775- 807) Of Human Zinc Finger Protein 268
Length = 46
Score = 28.9 bits (63), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 17/32 (53%)
Query: 178 HACDQCDRTFSCMPYLRQHQKLHSGITYSCPS 209
+ C +C + FS YL H + HSG S PS
Sbjct: 13 YGCSECGKAFSSKSYLIIHMRTHSGEKPSGPS 44
>pdb|2EME|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
725- 757) Of Human Zinc Finger Protein 473
Length = 46
Score = 28.9 bits (63), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 178 HACDQCDRTFSCMPYLRQHQKLHSGITYSCPS 209
+ CD C + F L +HQ++H+G S PS
Sbjct: 13 YVCDYCGKAFGLSAELVRHQRIHTGEKPSGPS 44
>pdb|2EM6|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
199- 231) Of Human Zinc Finger Protein 224
Length = 46
Score = 28.9 bits (63), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 20/32 (62%)
Query: 178 HACDQCDRTFSCMPYLRQHQKLHSGITYSCPS 209
+ CD C + FS +L+ HQ++H+G S PS
Sbjct: 13 YKCDVCGKEFSQSSHLQTHQRVHTGEKPSGPS 44
>pdb|2EJ4|A Chain A, Functional And Structural Basis Of Nuclear Localization
Signal In Zic3 Zinc Finger Domain: A Role Of Conserved
Tryptophan Residue In The Zinc Finger Domain
Length = 95
Score = 28.9 bits (63), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 25/59 (42%), Gaps = 10/59 (16%)
Query: 183 CDRTFSCMPYLRQH----------QKLHSGITYSCPSCSKSFNRKDRYRMHLKLHQGVR 231
CDRTFS M L H Q H CP KSF K + H+++H G +
Sbjct: 31 CDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEK 89
>pdb|2EMJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
612- 644) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 28.9 bits (63), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 180 CDQCDRTFSCMPYLRQHQKLHSGITYSCPS 209
C +C ++FS L HQ++H+G S PS
Sbjct: 15 CAECGKSFSISSQLATHQRIHTGEKPSGPS 44
>pdb|2CTD|A Chain A, Solution Structure Of Two Zf-C2h2 Domains From Human Zinc
Finger Protein 512
Length = 96
Score = 28.9 bits (63), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Query: 126 CPECDKTFLST-SGLREHRKVHAGVRYICHACPREFSSEATMKAHV-ASHN 174
CP C T GL++H + + CH C ++ S A MK HV A+HN
Sbjct: 37 CPTCQAVGRKTIEGLKKHMENCKQEMFTCHHCGKQLRSLAGMKYHVMANHN 87
>pdb|2M0F|A Chain A, Solution Structure Of Miz-1 Zinc Finger 7
Length = 29
Score = 28.5 bits (62), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 234 CKECSKEFSNEYNLKNHMVLHD 255
C+EC K+F+ NLK H+ +H
Sbjct: 5 CRECGKQFTTSGNLKRHLRIHS 26
>pdb|1RIK|A Chain A, E6-Binding Zinc Finger (E6apc1)
Length = 29
Score = 28.5 bits (62), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 205 YSCPSCSKSFNRKDRYRMHLKLHQG 229
++CP C K F R D +H+ LH+
Sbjct: 3 FACPECPKRFMRSDHLTLHILLHEN 27
>pdb|2YTT|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
204- 236) Of Human Zinc Finger Protein 473
Length = 46
Score = 28.5 bits (62), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 10/23 (43%), Positives = 12/23 (52%)
Query: 232 HTCKECSKEFSNEYNLKNHMVLH 254
+ C EC K FS Y L H + H
Sbjct: 13 YQCSECGKSFSGSYRLTQHWITH 35
>pdb|2YSV|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 17 In
Zinc Finger Protein 473
Length = 42
Score = 28.5 bits (62), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 15/25 (60%)
Query: 124 YPCPECDKTFLSTSGLREHRKVHAG 148
Y C EC K F +S L HR+VH G
Sbjct: 11 YVCQECGKAFTQSSCLSIHRRVHTG 35
>pdb|2EM3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
640- 672) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 28.5 bits (62), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 180 CDQCDRTFSCMPYLRQHQKLHSGITYSCPS 209
C C + F+ +L QHQK H+G S PS
Sbjct: 15 CKVCSKAFTQKAHLAQHQKTHTGEKPSGPS 44
>pdb|2EM1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
637- 667) Of Human Zinc Finger Protein 268
Length = 44
Score = 28.5 bits (62), Expect = 5.0, Method: Composition-based stats.
Identities = 13/27 (48%), Positives = 15/27 (55%)
Query: 124 YPCPECDKTFLSTSGLREHRKVHAGVR 150
Y C EC K F S L H+ VH GV+
Sbjct: 11 YSCNECGKAFTFKSQLIVHKGVHTGVK 37
>pdb|2EMI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
547- 579) Of Human Zinc Finger Protein 484
Length = 46
Score = 28.1 bits (61), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 124 YPCPECDKTFLSTSGLREHRKVHAGVR 150
Y C EC K F+ S L H+++H G +
Sbjct: 13 YECSECGKAFIQKSTLSMHQRIHRGEK 39
>pdb|2EMP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
536- 568) Of Human Zinc Finger Protein 347
Length = 46
Score = 28.1 bits (61), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 178 HACDQCDRTFSCMPYLRQHQKLHSGITYSCPS 209
+ C++C + FS L HQ +H+G S PS
Sbjct: 13 YMCNECGKAFSVYSSLTTHQVIHTGEKPSGPS 44
>pdb|2YTP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
687- 719) Of Human Zinc Finger Protein 484
Length = 46
Score = 28.1 bits (61), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 205 YSCPSCSKSFNRKDRYRMHLKLHQGVR 231
Y C C K+F RK MH ++H G +
Sbjct: 13 YECSECGKAFARKSTLIMHQRIHTGEK 39
>pdb|1VA3|A Chain A, Solution Structure Of Transcription Factor Sp1 Dna Binding
Domain (Zinc Finger 3)
pdb|1SP1|A Chain A, Nmr Structure Of A Zinc Finger Domain From Transcription
Factor Sp1f3, Minimized Average Structure
Length = 29
Score = 28.1 bits (61), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 205 YSCPSCSKSFNRKDRYRMHLKLHQGVR 231
++CP C K F R D H+K HQ +
Sbjct: 3 FACPECPKRFMRSDHLSKHIKTHQNKK 29
>pdb|2EPV|A Chain A, Solution Structure Of The 20th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 268
Length = 44
Score = 28.1 bits (61), Expect = 5.8, Method: Composition-based stats.
Identities = 13/26 (50%), Positives = 15/26 (57%)
Query: 124 YPCPECDKTFLSTSGLREHRKVHAGV 149
Y C EC K F+ S L H + HAGV
Sbjct: 13 YECNECGKAFIWKSLLIVHERTHAGV 38
>pdb|2YTG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
369- 401) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 28.1 bits (61), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 20/30 (66%)
Query: 180 CDQCDRTFSCMPYLRQHQKLHSGITYSCPS 209
C +C ++++ +L QHQ++H+G S PS
Sbjct: 15 CGECGKSYNQRVHLTQHQRVHTGEKPSGPS 44
>pdb|2EM0|A Chain A, Solution Structure Of The 18th Zf-C2h2 Domain From Human
Zinc Finger Protein 224
Length = 46
Score = 28.1 bits (61), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 124 YPCPECDKTFLSTSGLREHRKVHAGVR 150
+ C ECD F S LR H+ VH G +
Sbjct: 13 WKCRECDMCFSQASSLRLHQNVHVGEK 39
>pdb|2YSP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
507- 539) Of Human Zinc Finger Protein 224
Length = 46
Score = 28.1 bits (61), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 14/27 (51%)
Query: 205 YSCPSCSKSFNRKDRYRMHLKLHQGVR 231
Y C C K +N K MH K+H G R
Sbjct: 13 YKCEKCGKGYNSKFNLDMHQKVHTGER 39
>pdb|2EPA|A Chain A, Solution Structure Of The First And Second Zf-C2h2 Domains
From Human Krueppel-Like Factor 10
Length = 72
Score = 28.1 bits (61), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 5/72 (6%)
Query: 78 QGARGRAVYLSRMSTTLTRHPCPQCSRDFATVKILKTHLKTHEG-IIYPCP--ECDKTFL 134
G+ G + SR+ + + HP C + + LK H +TH G + C C++ F
Sbjct: 3 SGSSGPQIDSSRIRSHICSHP--GCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFA 60
Query: 135 STSGLREHRKVH 146
+ L HR+ H
Sbjct: 61 RSDELSRHRRTH 72
Score = 27.7 bits (60), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 27/65 (41%), Gaps = 10/65 (15%)
Query: 218 DRYRMHLKLHQGVRHTCKECSKEFSNEYNLKNHMVLH-DVRAYVCEL--CARQFTRVDHF 274
R R H+ H G C K + +LK H H + + C C R+F R D
Sbjct: 13 SRIRSHICSHPG-------CGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDEL 65
Query: 275 NHHRR 279
+ HRR
Sbjct: 66 SRHRR 70
>pdb|2ENA|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
311- 343) Of Human Zinc Finger Protein 224
Length = 46
Score = 27.7 bits (60), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 180 CDQCDRTFSCMPYLRQHQKLHSGITYSCPS 209
CD CD++F L H+ +H+G S PS
Sbjct: 15 CDTCDKSFRQRSALNSHRMIHTGEKPSGPS 44
>pdb|2YTN|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
732- 764) Of Human Zinc Finger Protein 347
Length = 46
Score = 27.7 bits (60), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 14/27 (51%)
Query: 124 YPCPECDKTFLSTSGLREHRKVHAGVR 150
Y C EC K F S L HR +H G +
Sbjct: 13 YKCNECGKVFTQNSHLARHRGIHTGEK 39
>pdb|2YTI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
564- 596) Of Human Zinc Finger Protein 347
Length = 46
Score = 27.7 bits (60), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 14/27 (51%)
Query: 124 YPCPECDKTFLSTSGLREHRKVHAGVR 150
Y C EC K F S L HR +H G +
Sbjct: 13 YKCNECGKVFTQNSHLARHRGIHTGEK 39
>pdb|1EJ6|B Chain B, Reovirus Core
pdb|1EJ6|C Chain C, Reovirus Core
pdb|2CSE|V Chain V, Features Of Reovirus Outer-Capsid Protein Mu1 Revealed By
Electron And Image Reconstruction Of The Virion At 7.0-A
Resolution
pdb|2CSE|W Chain W, Features Of Reovirus Outer-Capsid Protein Mu1 Revealed By
Electron And Image Reconstruction Of The Virion At 7.0-A
Resolution
Length = 1275
Score = 27.7 bits (60), Expect = 7.8, Method: Composition-based stats.
Identities = 12/27 (44%), Positives = 14/27 (51%)
Query: 147 AGVRYICHACPREFSSEATMKAHVASH 173
+G Y CH C S + AHVASH
Sbjct: 177 SGHGYQCHVCSAVLFSPLDLDAHVASH 203
>pdb|3UK3|C Chain C, Crystal Structure Of Znf217 Bound To Dna
pdb|3UK3|D Chain D, Crystal Structure Of Znf217 Bound To Dna
pdb|4F2J|C Chain C, Crystal Structure Of Znf217 Bound To Dna, P6522 Crystal
Form
pdb|4IS1|C Chain C, Crystal Structure Of Znf217 Bound To Dna
pdb|4IS1|D Chain D, Crystal Structure Of Znf217 Bound To Dna
Length = 57
Score = 27.7 bits (60), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Query: 99 CPQCSRDFATVKILKTHLKTHEGII-YPCPECDKTFLSTSGLREHRKVH 146
C C + F + L HL+TH G Y C C+ + LR H + H
Sbjct: 7 CSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERH 55
>pdb|2EP3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
631- 663) Of Human Zinc Finger Protein 484
Length = 46
Score = 27.7 bits (60), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 124 YPCPECDKTFLSTSGLREHRKVHAGVR 150
Y C EC K F S L H+K+H G +
Sbjct: 13 YRCAECGKAFTDRSNLFTHQKIHTGEK 39
>pdb|2YTH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
479- 511) Of Human Zinc Finger Protein 224
Length = 46
Score = 27.7 bits (60), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 180 CDQCDRTFSCMPYLRQHQKLHSGITYSCPS 209
C++C + F+ +L HQ++H+G S PS
Sbjct: 15 CEECGKRFTQNSHLHSHQRVHTGEKPSGPS 44
>pdb|2ELZ|A Chain A, Solution Structure Of The 17th Zf-C2h2 Domain From Human
Zinc Finger Protein 224
Length = 46
Score = 27.7 bits (60), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 205 YSCPSCSKSFNRKDRYRMHLKLHQG 229
Y C C K +NR+ MH ++H G
Sbjct: 13 YKCEDCGKGYNRRLNLDMHQRVHMG 37
>pdb|2EM9|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
367- 399) Of Human Zinc Finger Protein 224
Length = 46
Score = 27.7 bits (60), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 124 YPCPECDKTFLSTSGLREHRKVHAGVR 150
Y C EC K+F S L +H++VH+G +
Sbjct: 13 YNCKECGKSFRWASCLLKHQRVHSGEK 39
>pdb|1P7A|A Chain A, Solution Stucture Of The Third Zinc Finger From Bklf
Length = 37
Score = 27.3 bits (59), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 205 YSCPSCSKSFNRKDRYRMHLKLHQGV 230
+ CP C +SF+R D +H K H V
Sbjct: 12 FQCPDCDRSFSRSDHLALHRKRHMLV 37
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.326 0.136 0.448
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,065,839
Number of Sequences: 62578
Number of extensions: 309043
Number of successful extensions: 2293
Number of sequences better than 100.0: 164
Number of HSP's better than 100.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 945
Number of HSP's gapped (non-prelim): 1053
length of query: 294
length of database: 14,973,337
effective HSP length: 98
effective length of query: 196
effective length of database: 8,840,693
effective search space: 1732775828
effective search space used: 1732775828
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 51 (24.3 bits)