RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6546
(294 letters)
>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex;
1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*
Length = 190
Score = 90.6 bits (226), Expect = 3e-22
Identities = 62/174 (35%), Positives = 88/174 (50%), Gaps = 6/174 (3%)
Query: 112 LKTHLKTHEG-IIYPCPECDKTFLSTSGLREHRKVHAGVR-YICHACPREFSSEATMKAH 169
G Y CPEC K+F + L EH++ H G + Y C C + FS + + H
Sbjct: 9 SVAQAALEPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRH 68
Query: 170 VASHNGVQ-HACDQCDRTFSCMPYLRQHQKLHSG-ITYSCPSCSKSFNRKDRYRMHLKLH 227
+H G + + C +C ++FS LR HQ+ H+G Y+CP C KSF++ R H + H
Sbjct: 69 QRTHTGEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTH 128
Query: 228 QGVR-HTCKECSKEFSNEYNLKNHMVLH-DVRAYVCELCARQFTRVDHFNHHRR 279
G + + C EC K FS E NL H H + Y C C + F+R D N H+R
Sbjct: 129 TGEKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQR 182
Score = 89.4 bits (223), Expect = 8e-22
Identities = 62/161 (38%), Positives = 88/161 (54%), Gaps = 5/161 (3%)
Query: 99 CPQCSRDFATVKILKTHLKTHEG-IIYPCPECDKTFLSTSGLREHRKVHAGVR-YICHAC 156
CP+C + F+ L H +TH G Y CPEC K+F L H++ H G + Y C C
Sbjct: 24 CPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKPYKCPEC 83
Query: 157 PREFSSEATMKAHVASHNGVQ-HACDQCDRTFSCMPYLRQHQKLHSGI-TYSCPSCSKSF 214
+ FS A ++AH +H G + +AC +C ++FS + +LR HQ+ H+G Y CP C KSF
Sbjct: 84 GKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSF 143
Query: 215 NRKDRYRMHLKLHQGVR-HTCKECSKEFSNEYNLKNHMVLH 254
+R+D H + H G + + C EC K FS L H H
Sbjct: 144 SREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQRTH 184
Score = 81.7 bits (203), Expect = 6e-19
Identities = 64/197 (32%), Positives = 89/197 (45%), Gaps = 34/197 (17%)
Query: 48 LKTHLKTHEG-IIYPCPECDKTFLSTLTGTPQGARGRAVYLSRMSTTLTRH--------- 97
G Y CPEC K+F S L H
Sbjct: 9 SVAQAALEPGEKPYACPECGKSF-------------------SRSDHLAEHQRTHTGEKP 49
Query: 98 -PCPQCSRDFATVKILKTHLKTHEG-IIYPCPECDKTFLSTSGLREHRKVHAGVR-YICH 154
CP+C + F+ K L H +TH G Y CPEC K+F + LR H++ H G + Y C
Sbjct: 50 YKCPECGKSFSDKKDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACP 109
Query: 155 ACPREFSSEATMKAHVASHNGVQ-HACDQCDRTFSCMPYLRQHQKLHSG-ITYSCPSCSK 212
C + FS A ++AH +H G + + C +C ++FS L HQ+ H+G Y CP C K
Sbjct: 110 ECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGK 169
Query: 213 SFNRKDRYRMHLKLHQG 229
SF+R+D +H + H G
Sbjct: 170 SFSRRDALNVHQRTHTG 186
Score = 79.4 bits (197), Expect = 4e-18
Identities = 47/153 (30%), Positives = 76/153 (49%), Gaps = 5/153 (3%)
Query: 132 TFLSTSGLREHRKVHAGVR-YICHACPREFSSEATMKAHVASHNGVQ-HACDQCDRTFSC 189
+ +S + G + Y C C + FS + H +H G + + C +C ++FS
Sbjct: 2 SEFGSSSSVAQAALEPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSD 61
Query: 190 MPYLRQHQKLHSG-ITYSCPSCSKSFNRKDRYRMHLKLHQGVR-HTCKECSKEFSNEYNL 247
L +HQ+ H+G Y CP C KSF+++ R H + H G + + C EC K FS +L
Sbjct: 62 KKDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHL 121
Query: 248 KNHMVLH-DVRAYVCELCARQFTRVDHFNHHRR 279
+ H H + Y C C + F+R D+ + H+R
Sbjct: 122 RAHQRTHTGEKPYKCPECGKSFSREDNLHTHQR 154
Score = 59.8 bits (146), Expect = 5e-11
Identities = 49/180 (27%), Positives = 70/180 (38%), Gaps = 57/180 (31%)
Query: 35 CPQCSRDFATVKILKTHLKTHEG-IIYPCPECDKTFLSTLTGTPQGARGRAVYLSRMSTT 93
CP+C + F+ K L H +TH G Y CPEC K+F
Sbjct: 52 CPECGKSFSDKKDLTRHQRTHTGEKPYKCPECGKSF-------------------SQRAN 92
Query: 94 LTRH----------PCPQCSRDFATVKILKTHLKTHEGII-YPCPECDKTFLSTSGLREH 142
L H CP+C + F+ + L+ H +TH G Y CPEC K+F L H
Sbjct: 93 LRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTH 152
Query: 143 RKVHAGVRYICHACPREFSSEATMKAHVASHNGVQHACDQCDRTFSCMPYLRQHQKLHSG 202
++ H G + P + C +C ++FS L HQ+ H+G
Sbjct: 153 QRTHTGEK------P--------------------YKCPECGKSFSRRDALNVHQRTHTG 186
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Mus musculus} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 124
Score = 71.4 bits (176), Expect = 8e-16
Identities = 34/116 (29%), Positives = 49/116 (42%), Gaps = 10/116 (8%)
Query: 124 YPCPECDKTFLSTSGLREHRKVHAGVR-YICHACPREFSSEATMKAH---VASHNGVQ-H 178
CP C K FLS L+ H + H G + + C C + + + + H + Q
Sbjct: 8 VECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVF 67
Query: 179 ACDQCDRTFSCMPYLRQHQKLHSG-ITYSCPSCSKSFNRKDRYRMHLKLHQGVRHT 233
C C TF LR H H+G + Y C SCS+ F +K L+ H H+
Sbjct: 68 TCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKK----DLQSHMIKLHS 119
Score = 65.2 bits (160), Expect = 1e-13
Identities = 30/108 (27%), Positives = 45/108 (41%), Gaps = 14/108 (12%)
Query: 180 CDQCDRTFSCMPYLRQHQKLHSGIT-YSCPSCSKSFNRKDRYRMHLKLHQGVR--HT--- 233
C C + F YL+ H + H+G + CP C K + RK+ +L H+ +
Sbjct: 10 CPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKE----NLLEHEARNCMNRSEQ 65
Query: 234 ---CKECSKEFSNEYNLKNHMVLH-DVRAYVCELCARQFTRVDHFNHH 277
C C + F L+ HMV H Y C C++QF + H
Sbjct: 66 VFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSH 113
Score = 48.7 bits (117), Expect = 1e-07
Identities = 20/80 (25%), Positives = 33/80 (41%), Gaps = 5/80 (6%)
Query: 205 YSCPSCSKSFNRKDRYRMHLKLHQGVR-HTCKECSKEFSNEYNLKNHMVLHDV----RAY 259
CP+C K F K ++H + H G + C +C K + + NL H + + + +
Sbjct: 8 VECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVF 67
Query: 260 VCELCARQFTRVDHFNHHRR 279
C +C F R H
Sbjct: 68 TCSVCQETFRRRMELRLHMV 87
Score = 44.4 bits (106), Expect = 3e-06
Identities = 31/130 (23%), Positives = 46/130 (35%), Gaps = 35/130 (26%)
Query: 35 CPQCSRDFATVKILKTHLKTHEG-IIYPCPECDKTFLSTLTGTPQGARGRAVYLSRMSTT 93
CP C + F + LK H + H G + CP+C K +
Sbjct: 10 CPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCY-------------------FRKEN 50
Query: 94 LTRH-------------PCPQCSRDFATVKILKTHLKTHEG-IIYPCPECDKTFLSTSGL 139
L H C C F L+ H+ +H G + Y C C + F+ L
Sbjct: 51 LLEHEARNCMNRSEQVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDL 110
Query: 140 REH-RKVHAG 148
+ H K+H+G
Sbjct: 111 QSHMIKLHSG 120
>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the
cerebellum 3, disease mutation, DNA-binding,
metal-binding, nucleus, polymorphism; NMR {Homo sapiens}
Length = 155
Score = 70.8 bits (174), Expect = 3e-15
Identities = 33/160 (20%), Positives = 57/160 (35%), Gaps = 24/160 (15%)
Query: 102 CSRDFATVKILKTHLKTHEG-IIYPCPECDKTFLSTSGLREHRKVHAGVRYICHACPREF 160
+K + E + P CD+TF + L H +
Sbjct: 3 SGSSGQPIKQELSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVG----------- 51
Query: 161 SSEATMKAHVASHNGVQHACDQCDRTFSCMPYLRQHQKLHSG-ITYSC--PSCSKSFNRK 217
+H C + ++F L H ++H+G + C P C K F R
Sbjct: 52 ------GPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARS 105
Query: 218 DRYRMHLKLHQGVR-HTC--KECSKEFSNEYNLKNHMVLH 254
+ ++H + H G + C + C + F+N + K HM +H
Sbjct: 106 ENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVH 145
Score = 60.4 bits (147), Expect = 2e-11
Identities = 33/141 (23%), Positives = 45/141 (31%), Gaps = 17/141 (12%)
Query: 156 CPREFSSEATMKAHVASHNG-VQHACDQCDRTFSCMPYLRQHQKLHSG----------IT 204
+ + CDRTFS M L H +
Sbjct: 3 SGSSGQPIKQELSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYW 62
Query: 205 YSCPSCSKSFNRKDRYRMHLKLHQGVR-HTCK--ECSKEFSNEYNLKNHMVLH-DVRAYV 260
CP KSF K + H+++H G + C C K F+ NLK H H + +
Sbjct: 63 EECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFK 122
Query: 261 CEL--CARQFTRVDHFNHHRR 279
CE C R+F H
Sbjct: 123 CEFEGCDRRFANSSDRKKHMH 143
Score = 58.5 bits (142), Expect = 7e-11
Identities = 31/130 (23%), Positives = 51/130 (39%), Gaps = 16/130 (12%)
Query: 89 RMSTTLTRHPCPQCSRDFATVKILKTHLKTHEG----------IIYPCPECDKTFLSTSG 138
+ P C R F+T+ L TH+ CP K+F +
Sbjct: 18 WIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYK 77
Query: 139 LREHRKVHAGVR-YICHA--CPREFSSEATMKAHVASHNGVQ-HAC--DQCDRTFSCMPY 192
L H +VH G + + C C + F+ +K H +H G + C + CDR F+
Sbjct: 78 LVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSD 137
Query: 193 LRQHQKLHSG 202
++H +H+
Sbjct: 138 RKKHMHVHTS 147
Score = 40.3 bits (95), Expect = 1e-04
Identities = 12/82 (14%), Positives = 21/82 (25%), Gaps = 11/82 (13%)
Query: 209 SCSKSFNRKDRYRMHLKLHQGVR-HTCKECSKEFSNEYNLKNHMVLH----------DVR 257
S S + + + K C + FS + L H+ +
Sbjct: 2 SSGSSGQPIKQELSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCY 61
Query: 258 AYVCELCARQFTRVDHFNHHRR 279
C + F +H R
Sbjct: 62 WEECPREGKSFKAKYKLVNHIR 83
Score = 35.0 bits (81), Expect = 0.011
Identities = 28/126 (22%), Positives = 43/126 (34%), Gaps = 40/126 (31%)
Query: 35 CPQCSRDFATVKILKTHLKTHEGII-YPCPECDKTFLSTLTGTPQGARGRAVYLSRMSTT 93
CP+ + F L H++ H G +PCP
Sbjct: 65 CPREGKSFKAKYKLVNHIRVHTGEKPFPCPF----------------------------- 95
Query: 94 LTRHPCPQCSRDFATVKILKTHLKTHEGII-YPC--PECDKTFLSTSGLREHRKVHAGVR 150
P C + FA + LK H +TH G + C CD+ F ++S ++H VH +
Sbjct: 96 ------PGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVHTSDK 149
Query: 151 -YICHA 155
Sbjct: 150 SGPSSG 155
Score = 28.0 bits (63), Expect = 2.3
Identities = 5/48 (10%), Positives = 14/48 (29%), Gaps = 1/48 (2%)
Query: 236 ECSKEFSNEYNLKNHMVLHDV-RAYVCELCARQFTRVDHFNHHRRLQH 282
+ + + + + C R F+ + H ++H
Sbjct: 2 SSGSSGQPIKQELSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEH 49
Score = 27.3 bits (61), Expect = 4.7
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Query: 34 PCPQCSRDFATVKILKTHLKTHEGII-YPC--PECDKTF 69
P P C + FA + LK H +TH G + C CD+ F
Sbjct: 94 PFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRF 132
>1tf6_A Protein (transcription factor IIIA); complex (transcription
regulation/DNA), RNA polymerase III, transcription
initiation, zinc finger protein; HET: DNA; 3.10A
{Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A
Length = 190
Score = 70.3 bits (173), Expect = 8e-15
Identities = 45/173 (26%), Positives = 69/173 (39%), Gaps = 20/173 (11%)
Query: 100 PQCSRDFATVKILKTHLKTHEG-IIYPCPE--CDKTFLSTSGLREHRKVHAGVR-YIC-- 153
C + L+ HL H G +PC E C+K F S L H H G + + C
Sbjct: 18 ADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDS 77
Query: 154 HACPREFSSEATMKAHVASHNGVQHA-----CDQCDRTFSCMPYLRQHQKLHSG-ITYSC 207
C F+++A MK H + ++ + C + F L+ HQ H+ + Y C
Sbjct: 78 DGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYEC 137
Query: 208 --PSCSKSFNRKDRYRMHLKLHQGVR----HTCKECSKEFSNEYNLKNHMVLH 254
C K F+ R + H K+H G +C K ++ LK+ H
Sbjct: 138 PHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGKTWTL--YLKHVAECH 188
Score = 58.0 bits (141), Expect = 2e-10
Identities = 32/180 (17%), Positives = 55/180 (30%), Gaps = 40/180 (22%)
Query: 115 HLKTHEG-IIYPC--PECDKTFLSTSGLREHRKVHAGVR-YICHACPREFSSEATMKAHV 170
Y C +C + L+ H H G + + C
Sbjct: 3 EKALPVVYKRYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKE--------------- 47
Query: 171 ASHNGVQHACDQCDRTFSCMPYLRQHQKLHSG-ITYSC--PSCSKSFNRKDRYRMHLKLH 227
+ C++ F+ + +L +H H+G ++C C F K + H
Sbjct: 48 ----------EGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNRF 97
Query: 228 QGVRH-----TCKECSKEFSNEYNLKNHMVLH-DVRAYVC--ELCARQFTRVDHFNHHRR 279
++ + C K F LK H H Y C E C ++F+ H +
Sbjct: 98 HNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEK 157
Score = 27.6 bits (62), Expect = 3.7
Identities = 27/119 (22%), Positives = 33/119 (27%), Gaps = 46/119 (38%)
Query: 35 CPQCSRDFATVKILKTHLKTHEG-IIYPCPE--CDKTFLSTLTGTPQGARGRAVYLSRMS 91
C + F LK H +H + Y CP CDK F S S
Sbjct: 109 FENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRF------------------SLPS 150
Query: 92 TTLTRHPCPQCSRDFATVKILKTHLKTHEGII----YPCPECDKTFLSTSGLREHRKVH 146
LK H K H G C KT+ T L+ + H
Sbjct: 151 R-------------------LKRHEKVHAGYPCKKDDSCSFVGKTW--TLYLKHVAECH 188
>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA
complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 155
Score = 68.4 bits (168), Expect = 2e-14
Identities = 40/170 (23%), Positives = 65/170 (38%), Gaps = 36/170 (21%)
Query: 124 YPCPECDKTFLSTSGLREH---RKVHAGVR-YICHACPREFSSEATMKAHVASHNGVQHA 179
C + F S L H +H + ++CH
Sbjct: 4 CRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWG----------------------G 41
Query: 180 CDQCDRTFSCMPYLRQHQKLHSGIT-YSCPS--CSKSFNRKDRYRMHLKLHQGVR-HTCK 235
C + R F L H + H+G + C C KS++R + + HL+ H G + + C+
Sbjct: 42 CSRELRPFKAQYMLVVHMRRHTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCE 101
Query: 236 E--CSKEFSNEYNLKNHMV-LH-DVRAYVCEL--CARQFTRVDHFNHHRR 279
CSK FSN + H H + + YVC+L C +++T H +
Sbjct: 102 HEGCSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVK 151
Score = 55.3 bits (134), Expect = 9e-10
Identities = 37/152 (24%), Positives = 61/152 (40%), Gaps = 23/152 (15%)
Query: 99 CPQCSRDFATVKILKTHLKTHEGII------YPCPECD-----KTFLSTSGLREHRKVHA 147
CS++F + + L H+ + I + C + F + L H + H
Sbjct: 6 WDGCSQEFDSQEQLVHHINSE--HIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHT 63
Query: 148 GVR-YICHA--CPREFSSEATMKAHVASHNGVQ-HACDQ--CDRTFSCMPYLRQHQK-LH 200
G + + C C + +S +K H+ SH G + + C+ C + FS +HQ H
Sbjct: 64 GEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTH 123
Query: 201 SGIT-YSC--PSCSKSFNRKDRYRMHLKLHQG 229
S Y C P C+K + R H+K G
Sbjct: 124 SNEKPYVCKLPGCTKRYTDPSSLRKHVKTVHG 155
Score = 53.8 bits (130), Expect = 3e-09
Identities = 35/184 (19%), Positives = 64/184 (34%), Gaps = 50/184 (27%)
Query: 35 CPQCSRDFATVKILKTHLKTHEGII------YPCPECDKTFLSTLTGTPQGARGRAVYLS 88
CS++F + + L H+ + I + C
Sbjct: 6 WDGCSQEFDSQEQLVHHINSE--HIHGERKEFVCHWGG---------------------- 41
Query: 89 RMSTTLTRHPCPQCSRDFATVKILKTHLKTHEG-IIYPCP--ECDKTFLSTSGLREHRKV 145
C + R F +L H++ H G + C C K++ L+ H +
Sbjct: 42 ----------CSRELRPFKAQYMLVVHMRRHTGEKPHKCTFEGCRKSYSRLENLKTHLRS 91
Query: 146 HAGVR-YICH--ACPREFSSEATMKAHVA-SHNGVQ-HACD--QCDRTFSCMPYLRQHQK 198
H G + Y+C C + FS+ + H +H+ + + C C + ++ LR+H K
Sbjct: 92 HTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVK 151
Query: 199 LHSG 202
G
Sbjct: 152 TVHG 155
Score = 53.4 bits (129), Expect = 5e-09
Identities = 28/118 (23%), Positives = 46/118 (38%), Gaps = 15/118 (12%)
Query: 180 CDQCDRTFSCMPYLRQH---QKLHSGIT-YSC-----PSCSKSFNRKDRYRMHLKLHQGV 230
D C + F L H + +H + C + F + +H++ H G
Sbjct: 6 WDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTGE 65
Query: 231 R-HTCK--ECSKEFSNEYNLKNHMVLH-DVRAYVCE--LCARQFTRVDHFNHHRRLQH 282
+ H C C K +S NLK H+ H + Y+CE C++ F+ H+ H
Sbjct: 66 KPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTH 123
Score = 33.7 bits (78), Expect = 0.029
Identities = 25/124 (20%), Positives = 38/124 (30%), Gaps = 48/124 (38%)
Query: 34 PCPQCSRDFATVKILKTHLKTHEG-IIYPCPECDKTFLSTLTGTPQGARGRAVYLSRMST 92
C + ++ ++ LKTHL++H G Y C
Sbjct: 71 TFEGCRKSYSRLENLKTHLRSHTGEKPYMCEH---------------------------- 102
Query: 93 TLTRHPCPQCSRDFATVKILKTHLKTHEGII------YPC--PECDKTFLSTSGLREHRK 144
CS+ F+ + H+ Y C P C K + S LR+H K
Sbjct: 103 -------EGCSKAFSN----ASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVK 151
Query: 145 VHAG 148
G
Sbjct: 152 TVHG 155
>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET:
DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*
Length = 119
Score = 66.0 bits (162), Expect = 7e-14
Identities = 31/111 (27%), Positives = 52/111 (46%), Gaps = 9/111 (8%)
Query: 178 HACDQ--CDRTFSCMPYLRQHQKLHSGIT-YSC--PSCSKSFNRKDRYRMHLKLHQGVR- 231
C C++ + + +L+ H + H+G Y C C + F+R D+ + H + H GV+
Sbjct: 7 FMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKP 66
Query: 232 HTCKECSKEFSNEYNLKNHMVLH-DVRAYVCEL--CARQFTRVDHFNHHRR 279
CK C ++FS +LK H H + + C C ++F R D H
Sbjct: 67 FQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHN 117
Score = 62.9 bits (154), Expect = 7e-13
Identities = 34/138 (24%), Positives = 58/138 (42%), Gaps = 32/138 (23%)
Query: 124 YPCPE--CDKTFLSTSGLREHRKVHAGVR-YICHACPREFSSEATMKAHVASHNGVQHAC 180
+ C C+K + S L+ H + H G + Y C
Sbjct: 7 FMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDF------------------------- 41
Query: 181 DQCDRTFSCMPYLRQHQKLHSGIT-YSCPSCSKSFNRKDRYRMHLKLHQGVR-HTCK--E 236
C+R FS L++HQ+ H+G+ + C +C + F+R D + H + H G + +C+
Sbjct: 42 KDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPS 101
Query: 237 CSKEFSNEYNLKNHMVLH 254
C K+F+ L H +H
Sbjct: 102 CQKKFARSDELVRHHNMH 119
Score = 56.8 bits (138), Expect = 2e-10
Identities = 30/108 (27%), Positives = 54/108 (50%), Gaps = 7/108 (6%)
Query: 100 PQCSRDFATVKILKTHLKTHEG-IIYPC--PECDKTFLSTSGLREHRKVHAGVR-YICHA 155
P C++ + + L+ H + H G Y C +C++ F + L+ H++ H GV+ + C
Sbjct: 12 PGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKT 71
Query: 156 CPREFSSEATMKAHVASHNGVQ-HAC--DQCDRTFSCMPYLRQHQKLH 200
C R+FS +K H +H G + +C C + F+ L +H +H
Sbjct: 72 CQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH 119
Score = 44.0 bits (105), Expect = 4e-06
Identities = 33/127 (25%), Positives = 47/127 (37%), Gaps = 35/127 (27%)
Query: 36 PQCSRDFATVKILKTHLKTHEG-IIYPC--PECDKTFLSTLTGTPQGARGRAVYLSRMST 92
P C++ + + L+ H + H G Y C +C++ F S
Sbjct: 12 PGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRF-------------------SRSD 52
Query: 93 TLTRH----------PCPQCSRDFATVKILKTHLKTHEG-IIYPC--PECDKTFLSTSGL 139
L RH C C R F+ LKTH +TH G + C P C K F + L
Sbjct: 53 QLKRHQRRHTGVKPFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDEL 112
Query: 140 REHRKVH 146
H +H
Sbjct: 113 VRHHNMH 119
Score = 28.6 bits (65), Expect = 0.93
Identities = 17/45 (37%), Positives = 20/45 (44%), Gaps = 5/45 (11%)
Query: 35 CPQCSRDFATVKILKTHLKTHEG-IIYPC--PECDKTF--LSTLT 74
C C R F+ LKTH +TH G + C P C K F L
Sbjct: 69 CKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELV 113
>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding
protein, transcription/DNA complex; HET: DNA; 1.60A {Mus
musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A
1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A*
1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C
Length = 90
Score = 62.1 bits (152), Expect = 7e-13
Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 2/76 (2%)
Query: 181 DQCDRTFSCMPYLRQHQKLHSGIT-YSCPSCSKSFNRKDRYRMHLKLHQGVR-HTCKECS 238
+ CDR FS L +H ++H+G + C C ++F+R D H++ H G + C C
Sbjct: 10 ESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICG 69
Query: 239 KEFSNEYNLKNHMVLH 254
++F+ K H +H
Sbjct: 70 RKFARSDERKRHTKIH 85
Score = 57.9 bits (141), Expect = 3e-11
Identities = 22/79 (27%), Positives = 40/79 (50%), Gaps = 4/79 (5%)
Query: 205 YSCPS--CSKSFNRKDRYRMHLKLHQGVR-HTCKECSKEFSNEYNLKNHMVLHDV-RAYV 260
Y+CP C + F++ H+++H G + C+ C + FS +L H+ H + +
Sbjct: 5 YACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 261 CELCARQFTRVDHFNHHRR 279
C++C R+F R D H +
Sbjct: 65 CDICGRKFARSDERKRHTK 83
Score = 55.2 bits (134), Expect = 2e-10
Identities = 27/83 (32%), Positives = 41/83 (49%), Gaps = 4/83 (4%)
Query: 124 YPCP--ECDKTFLSTSGLREHRKVHAGVR-YICHACPREFSSEATMKAHVASHNGVQ-HA 179
Y CP CD+ F + L H ++H G + + C C R FS + H+ +H G + A
Sbjct: 5 YACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 180 CDQCDRTFSCMPYLRQHQKLHSG 202
CD C R F+ ++H K+H
Sbjct: 65 CDICGRKFARSDERKRHTKIHLR 87
Score = 53.6 bits (130), Expect = 1e-09
Identities = 26/83 (31%), Positives = 38/83 (45%), Gaps = 4/83 (4%)
Query: 151 YICHA--CPREFSSEATMKAHVASHNGVQ-HACDQCDRTFSCMPYLRQHQKLHSGIT-YS 206
Y C C R FS ++ H+ H G + C C R FS +L H + H+G ++
Sbjct: 5 YACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 207 CPSCSKSFNRKDRYRMHLKLHQG 229
C C + F R D + H K+H
Sbjct: 65 CDICGRKFARSDERKRHTKIHLR 87
Score = 37.4 bits (88), Expect = 5e-04
Identities = 23/96 (23%), Positives = 28/96 (29%), Gaps = 30/96 (31%)
Query: 37 QCSRDFATVKILKTHLKTHEG-IIYPCPECDKTFLSTLTGTPQGARGRAVYLSRMSTTLT 95
C R F+ L H++ H G + C C + F S LT
Sbjct: 11 SCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNF-------------------SRSDHLT 51
Query: 96 RH----------PCPQCSRDFATVKILKTHLKTHEG 121
H C C R FA K H K H
Sbjct: 52 THIRTHTGEKPFACDICGRKFARSDERKRHTKIHLR 87
Score = 25.5 bits (57), Expect = 8.6
Identities = 9/23 (39%), Positives = 9/23 (39%)
Query: 35 CPQCSRDFATVKILKTHLKTHEG 57
C C R FA K H K H
Sbjct: 65 CDICGRKFARSDERKRHTKIHLR 87
>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine
zipper, X-RAY crystallography, structure-based design,
zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1
g.37.1.1 PDB: 1xf7_A
Length = 88
Score = 60.2 bits (147), Expect = 4e-12
Identities = 16/83 (19%), Positives = 30/83 (36%), Gaps = 11/83 (13%)
Query: 205 YSCPSCSKSFNRKDRYRMHLKLHQGVRHT------CKECSKEFSNEYNLKNHMVLHDVRA 258
+ C C ++F+R D HL H HT C C ++F+ K H + +
Sbjct: 4 FQCRICMRNFSRSD----HLTTHIRT-HTGEKPFACDICGRKFARSDERKRHRDIQHILP 58
Query: 259 YVCELCARQFTRVDHFNHHRRLQ 281
+ + ++ H +
Sbjct: 59 ILEDKVEELLSKNYHLENEVARL 81
Score = 52.1 bits (126), Expect = 3e-09
Identities = 16/76 (21%), Positives = 29/76 (38%), Gaps = 1/76 (1%)
Query: 124 YPCPECDKTFLSTSGLREHRKVHAGVR-YICHACPREFSSEATMKAHVASHNGVQHACDQ 182
+ C C + F + L H + H G + + C C R+F+ K H + + D+
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQHILPILEDK 63
Query: 183 CDRTFSCMPYLRQHQK 198
+ S +L
Sbjct: 64 VEELLSKNYHLENEVA 79
Score = 42.9 bits (102), Expect = 6e-06
Identities = 17/95 (17%), Positives = 23/95 (24%), Gaps = 29/95 (30%)
Query: 60 YPCPECDKTFLSTLTGTPQGARGRAVYLSRMSTTLTRH----------PCPQCSRDFATV 109
+ C C + F SR S LT H C C R FA
Sbjct: 4 FQCRICMRNF------------------SR-SDHLTTHIRTHTGEKPFACDICGRKFARS 44
Query: 110 KILKTHLKTHEGIIYPCPECDKTFLSTSGLREHRK 144
K H + + ++ L
Sbjct: 45 DERKRHRDIQHILPILEDKVEELLSKNYHLENEVA 79
Score = 34.0 bits (79), Expect = 0.008
Identities = 7/35 (20%), Positives = 11/35 (31%)
Query: 35 CPQCSRDFATVKILKTHLKTHEGIIYPCPECDKTF 69
C C R FA K H + + ++
Sbjct: 34 CDICGRKFARSDERKRHRDIQHILPILEDKVEELL 68
Score = 27.8 bits (63), Expect = 1.3
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 256 VRAYVCELCARQFTRVDHFNHHRR 279
++ + C +C R F+R DH H R
Sbjct: 1 MKPFQCRICMRNFSRSDHLTTHIR 24
>1ubd_C Protein (YY1 zinc finger domain); transcription initiation,
initiator element, zinc finger protein, DNA- protein
recognition; HET: DNA; 2.50A {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*
Length = 124
Score = 61.0 bits (149), Expect = 5e-12
Identities = 31/111 (27%), Positives = 46/111 (41%), Gaps = 16/111 (14%)
Query: 180 CDQCDRTFSCMPYLRQHQKLHSGITYSCPSCSKSFNRKDRYRMHLKLHQGVRHT------ 233
C + F +R+H H + C C K+F LK HQ V HT
Sbjct: 10 HKGCTKMFRDNSAMRKHLHTHGPRVHVCAECGKAFVESS----KLKRHQLV-HTGEKPFQ 64
Query: 234 --CKECSKEFSNEYNLKNHMVLHD-VRAYVCEL--CARQFTRVDHFNHHRR 279
+ C K FS ++NL+ H+ +H R YVC C ++F + + H
Sbjct: 65 CTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHIL 115
Score = 59.1 bits (144), Expect = 2e-11
Identities = 32/108 (29%), Positives = 55/108 (50%), Gaps = 6/108 (5%)
Query: 153 CHACPREFSSEATMKAHVASHNGVQHACDQCDRTFSCMPYLRQHQKLHSG-ITYSCPS-- 209
C + F + M+ H+ +H H C +C + F L++HQ +H+G + C
Sbjct: 10 HKGCTKMFRDNSAMRKHLHTHGPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEG 69
Query: 210 CSKSFNRKDRYRMHLKLHQGVR-HTC--KECSKEFSNEYNLKNHMVLH 254
C K F+ R H+++H G R + C C+K+F+ NLK+H++ H
Sbjct: 70 CGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTH 117
Score = 57.5 bits (140), Expect = 8e-11
Identities = 35/136 (25%), Positives = 56/136 (41%), Gaps = 29/136 (21%)
Query: 98 PCPQCSRDFATVKILKTHLKTHEGIIYPCPECDKTFLSTSGLREHRKVHAGVR-YICHAC 156
P C++ F ++ HL TH ++ C EC K F+ +S L+ H+ VH G + + C
Sbjct: 9 PHKGCTKMFRDNSAMRKHLHTHGPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTF- 67
Query: 157 PREFSSEATMKAHVASHNGVQHACDQCDRTFSCMPYLRQHQKLHSG-ITYSCPS--CSKS 213
+ C + FS LR H ++H+G Y CP C+K
Sbjct: 68 ------------------------EGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKK 103
Query: 214 FNRKDRYRMHLKLHQG 229
F + + H+ H
Sbjct: 104 FAQSTNLKSHILTHAK 119
Score = 48.3 bits (116), Expect = 2e-07
Identities = 27/82 (32%), Positives = 37/82 (45%), Gaps = 7/82 (8%)
Query: 204 TYSCPS--CSKSFNRKDRYRMHLKLHQGVR-HTCKECSKEFSNEYNLKNHMVLH-DVRAY 259
T +CP C+K F R HL H G R H C EC K F LK H ++H + +
Sbjct: 5 TIACPHKGCTKMFRDNSAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPF 63
Query: 260 VCEL--CARQFTRVDHFNHHRR 279
C C ++F+ + H R
Sbjct: 64 QCTFEGCGKRFSLDFNLRTHVR 85
Score = 46.4 bits (111), Expect = 7e-07
Identities = 33/134 (24%), Positives = 49/134 (36%), Gaps = 34/134 (25%)
Query: 30 PTRHPCPQCSRDFATVKILKTHLKTHEGIIYPCPECDKTFLSTLTGTPQGARGRAVYLSR 89
P C++ F ++ HL TH ++ C EC K F
Sbjct: 5 TIACPHKGCTKMFRDNSAMRKHLHTHGPRVHVCAECGKAF-------------------V 45
Query: 90 MSTTLTRH------------PCPQCSRDFATVKILKTHLKTHEGII-YPCP--ECDKTFL 134
S+ L RH C + F+ L+TH++ H G Y CP C+K F
Sbjct: 46 ESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFA 105
Query: 135 STSGLREHRKVHAG 148
++ L+ H HA
Sbjct: 106 QSTNLKSHILTHAK 119
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein,
DNA- binding, transcription, C2H2-type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1
Length = 96
Score = 60.1 bits (147), Expect = 5e-12
Identities = 22/79 (27%), Positives = 34/79 (43%), Gaps = 2/79 (2%)
Query: 178 HACDQCDRTFSCMPYLRQHQKLHSGIT-YSCPSCSKSFNRKDRYRMHLKLHQGVR-HTCK 235
H C+ C + FS L+ H + H+G+ Y C +C + HL++H R C+
Sbjct: 9 HKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQ 68
Query: 236 ECSKEFSNEYNLKNHMVLH 254
C N L H+ H
Sbjct: 69 ICPYASRNSSQLTVHLRSH 87
Score = 58.6 bits (143), Expect = 2e-11
Identities = 20/81 (24%), Positives = 33/81 (40%), Gaps = 2/81 (2%)
Query: 124 YPCPECDKTFLSTSGLREHRKVHAGVR-YICHACPREFSSEATMKAHVASHNGVQ-HACD 181
+ C C K F L+ H + H GV+ Y C C + +++ H+ H+ + C
Sbjct: 9 HKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQ 68
Query: 182 QCDRTFSCMPYLRQHQKLHSG 202
C L H + H+G
Sbjct: 69 ICPYASRNSSQLTVHLRSHTG 89
Score = 50.1 bits (121), Expect = 2e-08
Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Query: 205 YSCPSCSKSFNRKDRYRMHLKLHQGVR-HTCKECSKEFSNEYNLKNHMVLH-DVRAYVCE 262
+ C C K F+RKD+ + H++ H GV+ + CK C ++ +L H+ +H D R + C+
Sbjct: 9 HKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQ 68
Query: 263 LCARQFTRVDHFNHHRR 279
+C H R
Sbjct: 69 ICPYASRNSSQLTVHLR 85
Score = 44.0 bits (105), Expect = 3e-06
Identities = 20/100 (20%), Positives = 26/100 (26%), Gaps = 30/100 (30%)
Query: 60 YPCPECDKTFLSTLTGTPQGARGRAVYLSRMSTTLTRH----------PCPQCSRDFATV 109
+ C C K F L H C C A
Sbjct: 9 HKCEVCGKCF-------------------SRKDKLKTHMRCHTGVKPYKCKTCDYAAADS 49
Query: 110 KILKTHLKTHEG-IIYPCPECDKTFLSTSGLREHRKVHAG 148
L HL+ H + C C ++S L H + H G
Sbjct: 50 SSLNKHLRIHSDERPFKCQICPYASRNSSQLTVHLRSHTG 89
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1
Length = 95
Score = 59.8 bits (146), Expect = 6e-12
Identities = 29/78 (37%), Positives = 41/78 (52%), Gaps = 4/78 (5%)
Query: 178 HACDQCDRTFSCMPYLRQHQKLHSGIT-YSCPSCSKSFNRKDRYRMHLKLHQGVR---HT 233
AC+ C + F + +L +H+ HSG YSCP C F RKDR H++ H G +
Sbjct: 8 VACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYI 67
Query: 234 CKECSKEFSNEYNLKNHM 251
C+ C K FS +L H+
Sbjct: 68 CQSCGKGFSRPDHLNGHI 85
Score = 52.1 bits (126), Expect = 3e-09
Identities = 22/82 (26%), Positives = 35/82 (42%), Gaps = 4/82 (4%)
Query: 205 YSCPSCSKSFNRKDRYRMHLKLHQGVR-HTCKECSKEFSNEYNLKNHMVLH---DVRAYV 260
+C C K F H H G + ++C C F + + H+ H + Y+
Sbjct: 8 VACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYI 67
Query: 261 CELCARQFTRVDHFNHHRRLQH 282
C+ C + F+R DH N H + H
Sbjct: 68 CQSCGKGFSRPDHLNGHIKQVH 89
Score = 51.7 bits (125), Expect = 5e-09
Identities = 27/84 (32%), Positives = 38/84 (45%), Gaps = 5/84 (5%)
Query: 124 YPCPECDKTFLSTSGLREHRKVHAGVR-YICHACPREFSSEATMKAHVASHNGVQ---HA 179
C C K F L H+ H+G + Y C C F + M HV SH+G +
Sbjct: 8 VACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYI 67
Query: 180 CDQCDRTFSCMPYLRQH-QKLHSG 202
C C + FS +L H +++HSG
Sbjct: 68 CQSCGKGFSRPDHLNGHIKQVHSG 91
Score = 41.3 bits (98), Expect = 2e-05
Identities = 23/75 (30%), Positives = 30/75 (40%), Gaps = 4/75 (5%)
Query: 99 CPQCSRDFATVKILKTHLKTHEG-IIYPCPECDKTFLSTSGLREHRKVHAGVR---YICH 154
C C + F V L H +H G Y CP C F + H + H G YIC
Sbjct: 10 CEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQ 69
Query: 155 ACPREFSSEATMKAH 169
+C + FS + H
Sbjct: 70 SCGKGFSRPDHLNGH 84
Score = 40.2 bits (95), Expect = 6e-05
Identities = 25/103 (24%), Positives = 34/103 (33%), Gaps = 33/103 (32%)
Query: 60 YPCPECDKTFLSTLTGTPQGARGRAVYLSRMSTTLTRH----------PCPQCSRDFATV 109
C C K F R L RH CP C F
Sbjct: 8 VACEICGKIF-------------------RDVYHLNRHKLSHSGEKPYSCPVCGLRFKRK 48
Query: 110 KILKTHLKTHEGII---YPCPECDKTFLSTSGLREH-RKVHAG 148
+ H+++H+G + Y C C K F L H ++VH+G
Sbjct: 49 DRMSYHVRSHDGSVGKPYICQSCGKGFSRPDHLNGHIKQVHSG 91
>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB
domain containing protein 22B, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 110
Score = 57.8 bits (141), Expect = 5e-11
Identities = 29/133 (21%), Positives = 45/133 (33%), Gaps = 41/133 (30%)
Query: 124 YPCPECDKTFLSTSGLREHRKVHAGVRYICHACPREFSSEATMKAHVASHNGVQHACDQC 183
YPC +C K+F S H +H G+R P C C
Sbjct: 11 YPC-QCGKSFTHKSQRDRHMSMHLGLR------PYG--------------------CGVC 43
Query: 184 DRTFSCMPYLRQHQKLHSGIT-YSCPSCSKSFNRKDRYRMHLKLHQGVRHT------CKE 236
+ F +L H K+H+GI Y C C+K F +D H+ V + +
Sbjct: 44 GKKFKMKHHLVGHMKIHTGIKPYECNICAKRFMWRD------SFHRHV-TSCTKSYEAAK 96
Query: 237 CSKEFSNEYNLKN 249
+ + +
Sbjct: 97 AEQNTTEASGPSS 109
Score = 50.9 bits (123), Expect = 1e-08
Identities = 23/92 (25%), Positives = 40/92 (43%), Gaps = 5/92 (5%)
Query: 182 QCDRTFSCMPYLRQHQKLHSGIT-YSCPSCSKSFNRKDRYRMHLKLHQGVR-HTCKECSK 239
QC ++F+ +H +H G+ Y C C K F K H+K+H G++ + C C+K
Sbjct: 14 QCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAK 73
Query: 240 EFSNEYNLKNHMVLHD-VRAYVCELCARQFTR 270
F + H + ++Y + T
Sbjct: 74 RFMWRDSF--HRHVTSCTKSYEAAKAEQNTTE 103
Score = 42.8 bits (102), Expect = 1e-05
Identities = 24/119 (20%), Positives = 37/119 (31%), Gaps = 30/119 (25%)
Query: 101 QCSRDFATVKILKTHLKTHEGII-YPCPECDKTFLSTSGLREHRKVHAGVRYICHACPRE 159
QC + F H+ H G+ Y C C K F L H K+H G++ P E
Sbjct: 14 QCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIK------PYE 67
Query: 160 FSSEATMKAHVASHNGVQHACDQCDRTFSCMPYLRQHQKLHSG-ITYSCPSCSKSFNRK 217
C+ C + F H+ + S +Y ++
Sbjct: 68 --------------------CNICAKRFMWRDSF--HRHVTSCTKSYEAAKAEQNTTEA 104
Score = 40.9 bits (97), Expect = 5e-05
Identities = 27/75 (36%), Positives = 43/75 (57%), Gaps = 3/75 (4%)
Query: 205 YSCPSCSKSFNRKDRYRMHLKLHQGVR-HTCKECSKEFSNEYNLKNHMVLHD-VRAYVCE 262
Y C C KSF K + H+ +H G+R + C C K+F +++L HM +H ++ Y C
Sbjct: 11 YPC-QCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECN 69
Query: 263 LCARQFTRVDHFNHH 277
+CA++F D F+ H
Sbjct: 70 ICAKRFMWRDSFHRH 84
Score = 30.1 bits (69), Expect = 0.26
Identities = 21/115 (18%), Positives = 32/115 (27%), Gaps = 31/115 (26%)
Query: 37 QCSRDFATVKILKTHLKTHEGII-YPCPECDKTFLSTLTGTPQGARGRAVYLSRMSTTLT 95
QC + F H+ H G+ Y C C K F +M L
Sbjct: 14 QCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKF-------------------KMKHHLV 54
Query: 96 RH----------PCPQCSRDFATVKILKTHLKTHEGIIYPCPECDKTFLSTSGLR 140
H C C++ F H+ + Y + ++ SG
Sbjct: 55 GHMKIHTGIKPYECNICAKRFMWRDSFHRHVTSCTKS-YEAAKAEQNTTEASGPS 108
Score = 27.0 bits (61), Expect = 3.0
Identities = 14/36 (38%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
Query: 35 CPQCSRDFATVKILKTHLKTHEGII-YPCPECDKTF 69
C C + F L H+K H GI Y C C K F
Sbjct: 40 CGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKRF 75
>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain,
protein-DNA complex, DNA-B metal-binding, nucleus; HET:
DNA; NMR {Rattus norvegicus}
Length = 82
Score = 55.9 bits (136), Expect = 1e-10
Identities = 26/77 (33%), Positives = 35/77 (45%), Gaps = 2/77 (2%)
Query: 180 CDQCDRTFSCMPYLRQHQKLHSGIT-YSCPSCSKSFNRKDRYRMHLKLHQGVR-HTCKEC 237
C C ++F L H +HS Y C C K F++K + H +H G + H C+ C
Sbjct: 4 CKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVC 63
Query: 238 SKEFSNEYNLKNHMVLH 254
K FS NL H H
Sbjct: 64 GKAFSQSSNLITHSRKH 80
Score = 55.5 bits (135), Expect = 2e-10
Identities = 27/81 (33%), Positives = 39/81 (48%), Gaps = 2/81 (2%)
Query: 124 YPCPECDKTFLSTSGLREHRKVHAGVR-YICHACPREFSSEATMKAHVASHNGVQ-HACD 181
+ C C K+F +S L H +H+ R Y C C + F ++ MK H H G + H C
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQ 61
Query: 182 QCDRTFSCMPYLRQHQKLHSG 202
C + FS L H + H+G
Sbjct: 62 VCGKAFSQSSNLITHSRKHTG 82
Score = 45.9 bits (110), Expect = 5e-07
Identities = 22/78 (28%), Positives = 39/78 (50%), Gaps = 2/78 (2%)
Query: 204 TYSCPSCSKSFNRKDRYRMHLKLHQGVR-HTCKECSKEFSNEYNLKNHMVLHD-VRAYVC 261
++ C C KSF R HL +H R + C+ C K F + ++K H +H + + C
Sbjct: 1 SFDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKC 60
Query: 262 ELCARQFTRVDHFNHHRR 279
++C + F++ + H R
Sbjct: 61 QVCGKAFSQSSNLITHSR 78
Score = 39.3 bits (93), Expect = 9e-05
Identities = 25/100 (25%), Positives = 35/100 (35%), Gaps = 30/100 (30%)
Query: 60 YPCPECDKTFLSTLTGTPQGARGRAVYLSRMSTTLTRH----------PCPQCSRDFATV 109
+ C C K+F + S+TL+ H PC C + F
Sbjct: 2 FDCKICGKSF-------------------KRSSTLSTHLLIHSDTRPYPCQYCGKRFHQK 42
Query: 110 KILKTHLKTHEG-IIYPCPECDKTFLSTSGLREHRKVHAG 148
+K H H G + C C K F +S L H + H G
Sbjct: 43 SDMKKHTFIHTGEKPHKCQVCGKAFSQSSNLITHSRKHTG 82
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Mus musculus} SCOP:
k.12.1.1
Length = 106
Score = 56.3 bits (137), Expect = 2e-10
Identities = 26/77 (33%), Positives = 36/77 (46%), Gaps = 2/77 (2%)
Query: 180 CDQCDRTFSCMPYLRQHQKLHSGIT-YSCPSCSKSFNRKDRYRMHLKLHQGVR-HTCKEC 237
C C R F+ L H++ H+ Y+C C K+F R+D R H +H + C+EC
Sbjct: 20 CKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQEC 79
Query: 238 SKEFSNEYNLKNHMVLH 254
K F L H LH
Sbjct: 80 GKGFCQSRTLAVHKTLH 96
Score = 53.2 bits (129), Expect = 2e-09
Identities = 26/96 (27%), Positives = 40/96 (41%), Gaps = 3/96 (3%)
Query: 137 SGLREHRKVHAGVR-YICHACPREFSSEATMKAHVASHNGVQ-HACDQCDRTFSCMPYLR 194
SG R + +IC C R F+ + H +H + + CD C + F +LR
Sbjct: 3 SGSSGGRLPSKTKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLR 62
Query: 195 QHQKLHSGIT-YSCPSCSKSFNRKDRYRMHLKLHQG 229
H+ +HS + C C K F + +H LH
Sbjct: 63 DHRYIHSKEKPFKCQECGKGFCQSRTLAVHKTLHMQ 98
Score = 52.4 bits (127), Expect = 4e-09
Identities = 18/91 (19%), Positives = 36/91 (39%), Gaps = 3/91 (3%)
Query: 192 YLRQHQKLHSGIT-YSCPSCSKSFNRKDRYRMHLKLHQGVR-HTCKECSKEFSNEYNLKN 249
+ + C C + F + +H + H R +TC C K F + +L++
Sbjct: 4 GSSGGRLPSKTKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRD 63
Query: 250 HMVLH-DVRAYVCELCARQFTRVDHFNHHRR 279
H +H + + C+ C + F + H+
Sbjct: 64 HRYIHSKEKPFKCQECGKGFCQSRTLAVHKT 94
Score = 45.1 bits (108), Expect = 2e-06
Identities = 27/123 (21%), Positives = 38/123 (30%), Gaps = 37/123 (30%)
Query: 91 STTLTRH----------PCPQCSRDFATVKILKTHLKTHEG-IIYPCPECDKTFLSTSGL 139
S+ + C C R F L H +TH Y C C K F L
Sbjct: 2 SSGSSGGRLPSKTKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHL 61
Query: 140 REHRKVHAGVRYICHACPREFSSEATMKAHVASHNGVQHACDQCDRTFSCMPYLRQHQKL 199
R+HR +H+ + P + C +C + F L H+ L
Sbjct: 62 RDHRYIHSKEK------PFK--------------------CQECGKGFCQSRTLAVHKTL 95
Query: 200 HSG 202
H
Sbjct: 96 HMQ 98
Score = 40.5 bits (96), Expect = 6e-05
Identities = 20/113 (17%), Positives = 29/113 (25%), Gaps = 31/113 (27%)
Query: 48 LKTHLKTHEGII-YPCPECDKTFLSTLTGTPQGARGRAVYLSRMSTTLTRH--------- 97
+ + C C + F S L H
Sbjct: 5 SSGGRLPSKTKKEFICKFCGRHF-------------------TKSYNLLIHERTHTDERP 45
Query: 98 -PCPQCSRDFATVKILKTHLKTHEG-IIYPCPECDKTFLSTSGLREHRKVHAG 148
C C + F L+ H H + C EC K F + L H+ +H
Sbjct: 46 YTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQECGKGFCQSRTLAVHKTLHMQ 98
>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND,
transcription factor, kruppel-like factor, GC-box
promoter elements, structural genomics; NMR {Homo
sapiens}
Length = 100
Score = 55.3 bits (134), Expect = 3e-10
Identities = 22/98 (22%), Positives = 41/98 (41%), Gaps = 7/98 (7%)
Query: 186 TFSCMPYLRQHQKLHSGITYSCPSCSKSFNRKDRYRMHLKLHQGVR-HTC--KECSKEFS 242
+ + +++H P C+K + + + HL+ H G + + C + C F+
Sbjct: 2 SSGSSGPDLEKRRIHYC---DYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFA 58
Query: 243 NEYNLKNHMVLH-DVRAYVCELCARQFTRVDHFNHHRR 279
L H H + + C +C R F+R DH H +
Sbjct: 59 RSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHLALHMK 96
Score = 52.6 bits (127), Expect = 3e-09
Identities = 28/119 (23%), Positives = 45/119 (37%), Gaps = 30/119 (25%)
Query: 112 LKTHLKTHEGIIYPCPECDKTFLSTSGLREHRKVHAGVR-YICHACPREFSSEATMKAHV 170
+ H P C K + +S L+ H + H G + Y C
Sbjct: 9 DLEKRRIHYC---DYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTW--------------- 50
Query: 171 ASHNGVQHACDQCDRTFSCMPYLRQHQKLHSGIT-YSCPSCSKSFNRKDRYRMHLKLHQ 228
+ CD F+ L +H + H+G + C C++SF+R D +H+K HQ
Sbjct: 51 ----------EGCDWRFARSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHLALHMKRHQ 99
Score = 51.1 bits (123), Expect = 1e-08
Identities = 24/99 (24%), Positives = 36/99 (36%), Gaps = 7/99 (7%)
Query: 160 FSSEATMKAHVASHNGVQHACDQCDRTFSCMPYLRQHQKLHSGIT-YSC--PSCSKSFNR 216
S H C + ++ +L+ H + H+G Y C C F R
Sbjct: 3 SGSSGPDLEKRRIHYC---DYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFAR 59
Query: 217 KDRYRMHLKLHQGVR-HTCKECSKEFSNEYNLKNHMVLH 254
D H + H G + C C++ FS +L HM H
Sbjct: 60 SDELTRHYRKHTGAKPFQCGVCNRSFSRSDHLALHMKRH 98
Score = 40.3 bits (95), Expect = 6e-05
Identities = 21/112 (18%), Positives = 30/112 (26%), Gaps = 35/112 (31%)
Query: 48 LKTHLKTHEGIIYPCPECDKTFLSTLTGTPQGARGRAVYLSRMSTTLTRH---------- 97
+ H P C K + S+ L H
Sbjct: 9 DLEKRRIHYC---DYPGCTKVY-------------------TKSSHLKAHLRTHTGEKPY 46
Query: 98 --PCPQCSRDFATVKILKTHLKTHEGII-YPCPECDKTFLSTSGLREHRKVH 146
C FA L H + H G + C C+++F + L H K H
Sbjct: 47 KCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHLALHMKRH 98
Score = 31.8 bits (73), Expect = 0.063
Identities = 10/35 (28%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 36 PQCSRDFATVKILKTHLKTHEGII-YPCPECDKTF 69
C FA L H + H G + C C+++F
Sbjct: 51 EGCDWRFARSDELTRHYRKHTGAKPFQCGVCNRSF 85
Score = 26.4 bits (59), Expect = 3.9
Identities = 8/25 (32%), Positives = 12/25 (48%)
Query: 32 RHPCPQCSRDFATVKILKTHLKTHE 56
C C+R F+ L H+K H+
Sbjct: 75 PFQCGVCNRSFSRSDHLALHMKRHQ 99
>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding,
transcription, metal-binding, DNA, protein, nucleus,
activator; 1.70A {Mus musculus} PDB: 2wbu_A
Length = 89
Score = 54.1 bits (131), Expect = 7e-10
Identities = 25/112 (22%), Positives = 40/112 (35%), Gaps = 28/112 (25%)
Query: 119 HEGI-IYPCPECDKTFLSTSGLREHRKVHAGVR-YICHACPREFSSEATMKAHVASHNGV 176
C KT+ +S L+ H + H G + Y C
Sbjct: 2 RTATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDW--------------------- 40
Query: 177 QHACDQCDRTFSCMPYLRQHQKLHSGIT-YSCPSCSKSFNRKDRYRMHLKLH 227
D C F+ L +H + H+G + C C ++F+R D +H+K H
Sbjct: 41 ----DGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLALHMKRH 88
Score = 50.6 bits (122), Expect = 1e-08
Identities = 24/79 (30%), Positives = 36/79 (45%), Gaps = 4/79 (5%)
Query: 180 CDQCDRTFSCMPYLRQHQKLHSGIT-YSC--PSCSKSFNRKDRYRMHLKLHQGVR-HTCK 235
C +T++ +L+ H + H+G Y C C F R D H + H G R C+
Sbjct: 10 YAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQ 69
Query: 236 ECSKEFSNEYNLKNHMVLH 254
+C + FS +L HM H
Sbjct: 70 KCDRAFSRSDHLALHMKRH 88
Score = 50.2 bits (121), Expect = 1e-08
Identities = 21/79 (26%), Positives = 34/79 (43%), Gaps = 4/79 (5%)
Query: 205 YSCPSCSKSFNRKDRYRMHLKLHQGVR-HTCK--ECSKEFSNEYNLKNHMVLH-DVRAYV 260
C K++ + + HL+ H G + + C C +F+ L H H R +
Sbjct: 8 CDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQ 67
Query: 261 CELCARQFTRVDHFNHHRR 279
C+ C R F+R DH H +
Sbjct: 68 CQKCDRAFSRSDHLALHMK 86
Score = 37.1 bits (87), Expect = 6e-04
Identities = 25/119 (21%), Positives = 34/119 (28%), Gaps = 41/119 (34%)
Query: 32 RHPCPQCSRDFATVKILKTHLKTHEGII-YPC--PECDKTFLSTLTGTPQGARGRAVYLS 88
C + + LK HL+TH G Y C C F +
Sbjct: 7 TCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKF------------------A 48
Query: 89 RMSTTLTRHPCPQCSRDFATVKILKTHLKTHEGII-YPCPECDKTFLSTSGLREHRKVH 146
R L H + H G + C +CD+ F + L H K H
Sbjct: 49 RSDE-------------------LTRHYRKHTGHRPFQCQKCDRAFSRSDHLALHMKRH 88
>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 86
Score = 52.5 bits (127), Expect = 2e-09
Identities = 16/70 (22%), Positives = 24/70 (34%), Gaps = 6/70 (8%)
Query: 178 HACDQCDRTFSCMPYLRQHQKLHSGIT-----YSCPSCSKSFNRKDRYRMHLKLHQGVR- 231
+AC CD+TF L H K + + C C K+F R++ H G
Sbjct: 16 YACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHADNCAGPDG 75
Query: 232 HTCKECSKEF 241
+
Sbjct: 76 VEGENSGPSS 85
Score = 49.4 bits (119), Expect = 2e-08
Identities = 22/105 (20%), Positives = 32/105 (30%), Gaps = 24/105 (22%)
Query: 112 LKTHLKTHEG-IIYPCPECDKTFLSTSGLREHRKVHAGVRYICHACPREFSSEATMKAHV 170
+ +TH G Y C CDKTF L H K + A V
Sbjct: 3 SGSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHD-------------PNFVPAAFV 49
Query: 171 ASHNGVQHACDQCDRTFSCMPYLRQHQKLHSG-ITYSCPSCSKSF 214
C +C +TF+ + +H +G + S
Sbjct: 50 ---------CSKCGKTFTRRNTMARHADNCAGPDGVEGENSGPSS 85
Score = 45.2 bits (108), Expect = 8e-07
Identities = 16/68 (23%), Positives = 25/68 (36%), Gaps = 6/68 (8%)
Query: 193 LRQHQKLHSGIT-YSCPSCSKSFNRKDRYRMHLKLHQGVR-----HTCKECSKEFSNEYN 246
+ H+G Y+C C K+F +K MH K + C +C K F+
Sbjct: 3 SGSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNT 62
Query: 247 LKNHMVLH 254
+ H
Sbjct: 63 MARHADNC 70
Score = 39.0 bits (92), Expect = 1e-04
Identities = 16/68 (23%), Positives = 21/68 (30%), Gaps = 12/68 (17%)
Query: 223 HLKLHQGVRHT------CKECSKEFSNEYNLKNHMVLH-----DVRAYVCELCARQFTRV 271
HT C C K F + L H + A+VC C + FTR
Sbjct: 2 SSGSSGRT-HTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRR 60
Query: 272 DHFNHHRR 279
+ H
Sbjct: 61 NTMARHAD 68
Score = 37.1 bits (87), Expect = 7e-04
Identities = 22/118 (18%), Positives = 30/118 (25%), Gaps = 40/118 (33%)
Query: 48 LKTHLKTHEG-IIYPCPECDKTFLSTLTGTPQGARGRAVYLSRMSTTLTRHPCPQCSRDF 106
+ +TH G Y C CDKTF R L H
Sbjct: 3 SGSSGRTHTGEKPYACSHCDKTF-------------------RQKQLLDMH--------- 34
Query: 107 ATVKILKTHLKTHEGII---YPCPECDKTFLSTSGLREHRKVHAGVR-YICHACPREF 160
K + + + C +C KTF + + H AG
Sbjct: 35 -----FKRY--HDPNFVPAAFVCSKCGKTFTRRNTMARHADNCAGPDGVEGENSGPSS 85
Score = 29.8 bits (68), Expect = 0.20
Identities = 11/40 (27%), Positives = 17/40 (42%), Gaps = 5/40 (12%)
Query: 35 CPQCSRDFATVKILKTHLKTHEGII-----YPCPECDKTF 69
C C + F ++L H K + + C +C KTF
Sbjct: 18 CSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTF 57
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 78
Score = 49.7 bits (119), Expect = 2e-08
Identities = 13/61 (21%), Positives = 20/61 (32%), Gaps = 4/61 (6%)
Query: 232 HTCKECSKEFSNEYNLKNHMVLHDVRA----YVCELCARQFTRVDHFNHHRRLQHDPEEF 287
C+ C + +L H H + CE C ++F + D HR H
Sbjct: 8 LQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPALLL 67
Query: 288 E 288
Sbjct: 68 A 68
Score = 43.5 bits (103), Expect = 2e-06
Identities = 10/54 (18%), Positives = 16/54 (29%), Gaps = 4/54 (7%)
Query: 205 YSCPSCSKSFNRKDRYRMHLKLHQGVR----HTCKECSKEFSNEYNLKNHMVLH 254
C C + +K H + H C+ C K F ++ H
Sbjct: 8 LQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKS 61
Score = 43.2 bits (102), Expect = 3e-06
Identities = 13/66 (19%), Positives = 18/66 (27%), Gaps = 5/66 (7%)
Query: 97 HPCPQCSRDFATVKILKTHLKTHEGII----YPCPECDKTFLSTSGLREH-RKVHAGVRY 151
C C L H + H + +PC C K F + H K H +
Sbjct: 8 LQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPALLL 67
Query: 152 ICHACP 157
Sbjct: 68 APQESS 73
Score = 40.9 bits (96), Expect = 3e-05
Identities = 11/67 (16%), Positives = 18/67 (26%), Gaps = 4/67 (5%)
Query: 151 YICHACPREFSSEATMKAHVASHNGVQ----HACDQCDRTFSCMPYLRQHQKLHSGITYS 206
C C +A++ H H C+ C + F + H+
Sbjct: 8 LQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPALLL 67
Query: 207 CPSCSKS 213
P S
Sbjct: 68 APQESSG 74
Score = 38.9 bits (91), Expect = 1e-04
Identities = 13/64 (20%), Positives = 22/64 (34%), Gaps = 4/64 (6%)
Query: 124 YPCPECDKTFLSTSGLREHRKVHAGVR----YICHACPREFSSEATMKAHVASHNGVQHA 179
C C T + L H++ HA + C C + F ++ AH + +
Sbjct: 8 LQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPALLL 67
Query: 180 CDQC 183
Q
Sbjct: 68 APQE 71
Score = 33.9 bits (78), Expect = 0.007
Identities = 10/41 (24%), Positives = 13/41 (31%), Gaps = 4/41 (9%)
Query: 33 HPCPQCSRDFATVKILKTHLKTHEGII----YPCPECDKTF 69
C C L H + H + +PC C K F
Sbjct: 8 LQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRF 48
Score = 27.8 bits (62), Expect = 1.2
Identities = 7/41 (17%), Positives = 12/41 (29%)
Query: 25 TSSTTPTRHPCPQCSRDFATVKILKTHLKTHEGIIYPCPEC 65
+ R PC C + F + H + P+
Sbjct: 31 AETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPALLLAPQE 71
>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 77
Score = 49.4 bits (119), Expect = 2e-08
Identities = 14/69 (20%), Positives = 21/69 (30%), Gaps = 10/69 (14%)
Query: 223 HLKLHQGVRHT------CKECSKEFSNEYNLKNHMVLH---DVRAYVCELCARQFTRVDH 273
H+ C C F+ +K H++ +V + C C R
Sbjct: 2 SSGSSGRT-HSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSD 60
Query: 274 FNHHRRLQH 282
H R QH
Sbjct: 61 LGVHLRKQH 69
Score = 47.9 bits (115), Expect = 8e-08
Identities = 12/57 (21%), Positives = 19/57 (33%), Gaps = 7/57 (12%)
Query: 180 CDQCDRTFSCMPYLRQHQKLHSGIT---YSCPSCSKSFNRKDRYRMHLKLHQGVRHT 233
C C F+ ++ H + CP C RK L +H +H+
Sbjct: 18 CYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKS----DLGVHLRKQHS 70
Score = 44.4 bits (106), Expect = 1e-06
Identities = 15/54 (27%), Positives = 19/54 (35%), Gaps = 4/54 (7%)
Query: 99 CPQCSRDFATVKILKTHLKTHEGII---YPCPECDKTFLSTSGLREH-RKVHAG 148
C C F +K H+ + CP CD S L H RK H+
Sbjct: 18 CYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQHSY 71
Score = 40.6 bits (96), Expect = 3e-05
Identities = 11/63 (17%), Positives = 22/63 (34%), Gaps = 4/63 (6%)
Query: 112 LKTHLKTHEG-IIYPCPECDKTFLSTSGLREHRKVHAGVR---YICHACPREFSSEATMK 167
+ +TH G Y C C F + ++ H + C C + ++ +
Sbjct: 3 SGSSGRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLG 62
Query: 168 AHV 170
H+
Sbjct: 63 VHL 65
Score = 36.0 bits (84), Expect = 0.001
Identities = 9/38 (23%), Positives = 12/38 (31%), Gaps = 3/38 (7%)
Query: 35 CPQCSRDFATVKILKTHLKTHEGII---YPCPECDKTF 69
C C F +K H+ + CP CD
Sbjct: 18 CYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVI 55
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast
structural genomics consortiu PSI-biology, protein
structure initiative; NMR {Homo sapiens}
Length = 74
Score = 47.8 bits (115), Expect = 7e-08
Identities = 18/65 (27%), Positives = 26/65 (40%), Gaps = 2/65 (3%)
Query: 192 YLRQHQKLHSGI-TYSCPSCSKSFNRKDRYRMHLKLHQGVR-HTCKECSKEFSNEYNLKN 249
+ H + Y C C SF K H +H G + + C C +F+ NLK
Sbjct: 4 HHHHHSHMTHSDKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKT 63
Query: 250 HMVLH 254
H +H
Sbjct: 64 HTRIH 68
Score = 43.6 bits (104), Expect = 2e-06
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Query: 180 CDQCDRTFSCMPYLRQHQKLHSGIT-YSCPSCSKSFNRKDRYRMHLKLHQG 229
CD+C +F L H+ +H+G Y C C FNR + H ++H G
Sbjct: 20 CDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSG 70
Score = 42.4 bits (101), Expect = 6e-06
Identities = 19/92 (20%), Positives = 28/92 (30%), Gaps = 27/92 (29%)
Query: 112 LKTHLKTHEGII-YPCPECDKTFLSTSGLREHRKVHAGVRYICHACPREFSSEATMKAHV 170
H Y C C +F L H+ VH G + P
Sbjct: 5 HHHHSHMTHSDKPYKCDRCQASFRYKGNLASHKTVHTGEK------P------------- 45
Query: 171 ASHNGVQHACDQCDRTFSCMPYLRQHQKLHSG 202
+ C+ C F+ L+ H ++HSG
Sbjct: 46 -------YRCNICGAQFNRPANLKTHTRIHSG 70
Score = 39.0 bits (92), Expect = 1e-04
Identities = 17/64 (26%), Positives = 24/64 (37%), Gaps = 8/64 (12%)
Query: 223 HLKLHQGVRHT------CKECSKEFSNEYNLKNHMVLHD-VRAYVCELCARQFTRVDHFN 275
H H + C C F + NL +H +H + Y C +C QF R +
Sbjct: 4 HHHHHSHM-THSDKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLK 62
Query: 276 HHRR 279
H R
Sbjct: 63 THTR 66
Score = 31.3 bits (72), Expect = 0.059
Identities = 17/103 (16%), Positives = 24/103 (23%), Gaps = 39/103 (37%)
Query: 48 LKTHLKTHEGII-YPCPECDKTFLSTLTGTPQGARGRAVYLSRMSTTLTRHPCPQCSRDF 106
H Y C C +F
Sbjct: 5 HHHHSHMTHSDKPYKCDRCQASF------------------RYKGN-------------- 32
Query: 107 ATVKILKTHLKTHEG-IIYPCPECDKTFLSTSGLREHRKVHAG 148
L +H H G Y C C F + L+ H ++H+G
Sbjct: 33 -----LASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSG 70
Score = 26.3 bits (59), Expect = 3.5
Identities = 11/36 (30%), Positives = 13/36 (36%), Gaps = 1/36 (2%)
Query: 35 CPQCSRDFATVKILKTHLKTHEG-IIYPCPECDKTF 69
C +C F L +H H G Y C C F
Sbjct: 20 CDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQF 55
>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid
binding, KIAA1227 protein, structural genomics; NMR
{Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Length = 107
Score = 47.6 bits (112), Expect = 2e-07
Identities = 16/78 (20%), Positives = 27/78 (34%), Gaps = 1/78 (1%)
Query: 95 TRHPCPQCSRDFATVKILKTHLKTHEGIIYPCPECDKTFLSTSGLREHRKVHAGVRYICH 154
+ C C+ +++ +H + CP C F S +EH + C
Sbjct: 15 EVYQCRLCNAKLSSLLEQGSHERLCRNA-AVCPYCSLRFFSPELKQEHESKCEYKKLTCL 73
Query: 155 ACPREFSSEATMKAHVAS 172
C R F S ++ H
Sbjct: 74 ECMRTFKSSFSIWRHQVE 91
Score = 46.8 bits (110), Expect = 4e-07
Identities = 16/88 (18%), Positives = 28/88 (31%), Gaps = 1/88 (1%)
Query: 196 HQKLHSGITYSCPSCSKSFNRKDRYRMHLKLHQGVRHTCKECSKEFSNEYNLKNHMVLHD 255
+ + Y C C+ + H +L + C CS F + + H +
Sbjct: 8 ASPVENKEVYQCRLCNAKLSSLLEQGSHERLCR-NAAVCPYCSLRFFSPELKQEHESKCE 66
Query: 256 VRAYVCELCARQFTRVDHFNHHRRLQHD 283
+ C C R F H+ H+
Sbjct: 67 YKKLTCLECMRTFKSSFSIWRHQVEVHN 94
Score = 43.0 bits (100), Expect = 9e-06
Identities = 17/84 (20%), Positives = 28/84 (33%), Gaps = 1/84 (1%)
Query: 115 HLKTHEGIIYPCPECDKTFLSTSGLREHRKVHAGVRYICHACPREFSSEATMKAHVASHN 174
+Y C C+ S H ++ +C C F S + H +
Sbjct: 8 ASPVENKEVYQCRLCNAKLSSLLEQGSHERLCR-NAAVCPYCSLRFFSPELKQEHESKCE 66
Query: 175 GVQHACDQCDRTFSCMPYLRQHQK 198
+ C +C RTF + +HQ
Sbjct: 67 YKKLTCLECMRTFKSSFSIWRHQV 90
Score = 41.4 bits (96), Expect = 3e-05
Identities = 19/99 (19%), Positives = 29/99 (29%), Gaps = 5/99 (5%)
Query: 135 STSGLREHRKVHAGVRYICHACPREFSSEATMKAHVASHNGVQHACDQCDRTFSCMPYLR 194
+SG V Y C C + SS +H C C F +
Sbjct: 1 GSSGSSGASPVENKEVYQCRLCNAKLSSLLEQGSHERLCR-NAAVCPYCSLRFFSPELKQ 59
Query: 195 QHQKLHSGITYSCPSCSKSFNRKDRYRMHLKLHQGVRHT 233
+H+ +C C ++F + HQ H
Sbjct: 60 EHESKCEYKKLTCLECMRTFK----SSFSIWRHQVEVHN 94
Score = 37.6 bits (86), Expect = 7e-04
Identities = 20/94 (21%), Positives = 30/94 (31%), Gaps = 11/94 (11%)
Query: 51 HLKTHEGIIYPCPECDKTFLSTLTGTPQGARGRAVYLSRMSTTLTRHPCPQCSRDFATVK 110
+Y C C+ S L S CP CS F + +
Sbjct: 8 ASPVENKEVYQCRLCNAKLSSLLE-----------QGSHERLCRNAAVCPYCSLRFFSPE 56
Query: 111 ILKTHLKTHEGIIYPCPECDKTFLSTSGLREHRK 144
+ + H E C EC +TF S+ + H+
Sbjct: 57 LKQEHESKCEYKKLTCLECMRTFKSSFSIWRHQV 90
Score = 33.0 bits (74), Expect = 0.029
Identities = 13/38 (34%), Positives = 18/38 (47%)
Query: 34 PCPQCSRDFATVKILKTHLKTHEGIIYPCPECDKTFLS 71
CP CS F + ++ + H E C EC +TF S
Sbjct: 44 VCPYCSLRFFSPELKQEHESKCEYKKLTCLECMRTFKS 81
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 72
Score = 46.3 bits (111), Expect = 3e-07
Identities = 22/64 (34%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
Query: 193 LRQHQKLHSGIT-YSCPSCSKSFNRKDRYRMHLKLHQGVR-HTCKECSKEFSNEYNLKNH 250
+HSG Y C C K+F+R H ++H G + + C EC K FS L NH
Sbjct: 2 SSGSSGIHSGEKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINH 61
Query: 251 MVLH 254
+H
Sbjct: 62 QRIH 65
Score = 44.0 bits (105), Expect = 1e-06
Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
Query: 138 GLREHRKVHAGVR-YICHACPREFSSEATMKAHVASHNGVQ-HACDQCDRTFSCMPYLRQ 195
G +H+G + Y C C + FS + + H H G + + C +C + FS L
Sbjct: 1 GSSGSSGIHSGEKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLIN 60
Query: 196 HQKLHSG 202
HQ++H+
Sbjct: 61 HQRIHTS 67
Score = 41.7 bits (99), Expect = 1e-05
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 180 CDQCDRTFSCMPYLRQHQKLHSGIT-YSCPSCSKSFNRKDRYRMHLKLHQG 229
C +C + FS L QHQ++H+G Y C C K+F++ H ++H
Sbjct: 17 CVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHTS 67
Score = 35.5 bits (83), Expect = 0.002
Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 99 CPQCSRDFATVKILKTHLKTHEG-IIYPCPECDKTFLSTSGLREHRKVHAG 148
C +C + F+ IL H + H G Y C EC K F SGL H+++H
Sbjct: 17 CVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHTS 67
Score = 34.4 bits (80), Expect = 0.004
Identities = 17/63 (26%), Positives = 26/63 (41%), Gaps = 8/63 (12%)
Query: 224 LKLHQGVRHT------CKECSKEFSNEYNLKNHMVLH-DVRAYVCELCARQFTRVDHFNH 276
G+ H+ C EC K FS L H +H + Y C C + F++ +
Sbjct: 2 SSGSSGI-HSGEKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLIN 60
Query: 277 HRR 279
H+R
Sbjct: 61 HQR 63
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double
helix, transcription/DNA complex; HET: DNA; 2.80A
{Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Length = 66
Score = 45.2 bits (108), Expect = 6e-07
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Query: 232 HTCKECSKEFSNEYNLKNHMVLHD---VRAYVCELCARQFTRVDHFNHHRRLQH 282
+ CK CS+ +++ N H V V+ Y C C ++FTR D+ H ++ H
Sbjct: 11 YRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIH 64
Score = 44.1 bits (105), Expect = 1e-06
Identities = 15/54 (27%), Positives = 23/54 (42%), Gaps = 3/54 (5%)
Query: 180 CDQCDRTFSCMPYLRQHQ--KLHSGI-TYSCPSCSKSFNRKDRYRMHLKLHQGV 230
C C R ++ + +H + Y CP C K F RKD H+K+ +
Sbjct: 13 CKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIHKI 66
Score = 42.2 bits (100), Expect = 6e-06
Identities = 13/53 (24%), Positives = 24/53 (45%), Gaps = 3/53 (5%)
Query: 205 YSCPSCSKSFNRKDRYRMHL--KLHQGVR-HTCKECSKEFSNEYNLKNHMVLH 254
Y C CS+ + + H + V+ + C C KEF+ + N+ H+ +
Sbjct: 11 YRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKII 63
Score = 39.1 bits (92), Expect = 7e-05
Identities = 15/54 (27%), Positives = 21/54 (38%), Gaps = 3/54 (5%)
Query: 99 CPQCSRDFATVKILKTHLKT--HEGII-YPCPECDKTFLSTSGLREHRKVHAGV 149
C CSR + + H T + YPCP C K F + H K+ +
Sbjct: 13 CKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIHKI 66
Score = 37.5 bits (88), Expect = 3e-04
Identities = 12/56 (21%), Positives = 22/56 (39%), Gaps = 3/56 (5%)
Query: 151 YICHACPREFSSEATMKAH--VASHNGVQ-HACDQCDRTFSCMPYLRQHQKLHSGI 203
Y C C R ++ + H + V+ + C C + F+ + H K+ I
Sbjct: 11 YRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIHKI 66
Score = 29.8 bits (68), Expect = 0.13
Identities = 13/38 (34%), Positives = 16/38 (42%), Gaps = 3/38 (7%)
Query: 35 CPQCSRDFATVKILKTHLKT--HEGII-YPCPECDKTF 69
C CSR + + H T + YPCP C K F
Sbjct: 13 CKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEF 50
Score = 28.7 bits (65), Expect = 0.38
Identities = 8/28 (28%), Positives = 14/28 (50%)
Query: 259 YVCELCARQFTRVDHFNHHRRLQHDPEE 286
Y C++C+R +T + +F H H
Sbjct: 11 YRCKVCSRVYTHISNFCRHYVTSHKRNV 38
Score = 27.1 bits (61), Expect = 1.4
Identities = 8/26 (30%), Positives = 13/26 (50%)
Query: 33 HPCPQCSRDFATVKILKTHLKTHEGI 58
+PCP C ++F + H+K I
Sbjct: 41 YPCPFCFKEFTRKDNMTAHVKIIHKI 66
>2j7j_A Transcription factor IIIA; zinc finger module, alternative
initiation, nuclear protein, phosphorylation,
hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus
laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B
2hgh_A
Length = 85
Score = 45.7 bits (109), Expect = 6e-07
Identities = 23/77 (29%), Positives = 28/77 (36%), Gaps = 4/77 (5%)
Query: 98 PCPQCSRDFATVKILKTHLKTHEGI-IYPC--PECDKTFLSTSGLREHRKVHAGVR-YIC 153
C + F LK H +H Y C CDK F S L+ H KVHAG
Sbjct: 5 HFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKD 64
Query: 154 HACPREFSSEATMKAHV 170
+C + HV
Sbjct: 65 DSCSFVGKTWTLYLKHV 81
Score = 44.1 bits (105), Expect = 2e-06
Identities = 17/81 (20%), Positives = 29/81 (35%), Gaps = 4/81 (4%)
Query: 206 SCPSCSKSFNRKDRYRMHLKLHQGVR-HTCKE--CSKEFSNEYNLKNHMVLHD-VRAYVC 261
+C K+F + ++ ++H H + C C K FS LK H +H
Sbjct: 5 HFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKD 64
Query: 262 ELCARQFTRVDHFNHHRRLQH 282
+ C+ + H H
Sbjct: 65 DSCSFVGKTWTLYLKHVAECH 85
Score = 39.9 bits (94), Expect = 7e-05
Identities = 26/107 (24%), Positives = 37/107 (34%), Gaps = 29/107 (27%)
Query: 123 IYPC--PECDKTFLSTSGLREHRKVHAGVR-YICHACPREFSSEATMKAHVASHNGVQHA 179
+Y C C K F + L+ H+ H Y C H G
Sbjct: 1 MYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYEC------------------PHEG---- 38
Query: 180 CDQCDRTFSCMPYLRQHQKLHSGIT-YSCPSCSKSFNRKDRYRMHLK 225
CD+ FS L++H+K+H+G SCS Y H+
Sbjct: 39 ---CDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGKTWTLYLKHVA 82
Score = 30.3 bits (69), Expect = 0.15
Identities = 19/113 (16%), Positives = 26/113 (23%), Gaps = 37/113 (32%)
Query: 34 PCPQCSRDFATVKILKTHLKTHEGI-IYPCPECDKTFLSTLTGTPQGARGRAVYLSRMST 92
C + F LK H +H Y CP
Sbjct: 5 HFENCGKAFKKHNQLKVHQFSHTQQLPYECPH---------------------------- 36
Query: 93 TLTRHPCPQCSRDFATVKILKTHLKTHEGII-YPCPECDKTFLSTSGLREHRK 144
C + F+ LK H K H G C + + +H
Sbjct: 37 -------EGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGKTWTLYLKHVA 82
>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 79
Score = 44.8 bits (107), Expect = 1e-06
Identities = 24/67 (35%), Positives = 32/67 (47%), Gaps = 5/67 (7%)
Query: 180 CDQCDRTFSCMPYLRQHQKL-HSGI-TYSCP--SCSKSFNRKDRYRMHLKLHQGVR-HTC 234
C R FS YL H+K H ++SCP +C KSFN K + H+KLH R + C
Sbjct: 12 FPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYIC 71
Query: 235 KECSKEF 241
+
Sbjct: 72 EFSGPSS 78
Score = 42.9 bits (102), Expect = 4e-06
Identities = 23/75 (30%), Positives = 33/75 (44%), Gaps = 15/75 (20%)
Query: 205 YSC--PSCSKSFNRKDRYRMHLKLHQGVRHT------CKE--CSKEFSNEYNLKNHMVLH 254
C P C + F+ + +L H+ +H C E C K F+ + +LK HM LH
Sbjct: 8 MPCDFPGCGRIFSNRQ----YLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLH 63
Query: 255 -DVRAYVCELCARQF 268
D R Y+CE
Sbjct: 64 SDTRDYICEFSGPSS 78
Score = 39.1 bits (92), Expect = 1e-04
Identities = 23/68 (33%), Positives = 30/68 (44%), Gaps = 5/68 (7%)
Query: 98 PCPQCSRDFATVKILKTHLK-THEGII-YPCPE--CDKTFLSTSGLREHRKVHAGVR-YI 152
P C R F+ + L H K H + CPE C K+F L+EH K+H+ R YI
Sbjct: 11 DFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYI 70
Query: 153 CHACPREF 160
C
Sbjct: 71 CEFSGPSS 78
Score = 38.7 bits (91), Expect = 2e-04
Identities = 20/96 (20%), Positives = 31/96 (32%), Gaps = 30/96 (31%)
Query: 124 YPC--PECDKTFLSTSGLREH-RKVHAGVR-YICHACPREFSSEATMKAHVASHNGVQHA 179
PC P C + F + L H + H + + C
Sbjct: 8 MPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPE------------------------ 43
Query: 180 CDQCDRTFSCMPYLRQHQKLHSGIT-YSCPSCSKSF 214
C ++F+ +L++H KLHS Y C S
Sbjct: 44 -PACGKSFNFKKHLKEHMKLHSDTRDYICEFSGPSS 78
Score = 30.6 bits (70), Expect = 0.092
Identities = 12/51 (23%), Positives = 19/51 (37%), Gaps = 4/51 (7%)
Query: 233 TCKECSKEFSNEYNLKNHM-VLHD-VRAYVCE--LCARQFTRVDHFNHHRR 279
C + FSN L +H H +++ C C + F H H +
Sbjct: 11 DFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMK 61
Score = 27.9 bits (63), Expect = 1.1
Identities = 12/40 (30%), Positives = 16/40 (40%), Gaps = 3/40 (7%)
Query: 33 HPCPQ--CSRDFATVKILKTHLKTHEGII-YPCPECDKTF 69
CP+ C + F K LK H+K H Y C +
Sbjct: 39 FSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICEFSGPSS 78
>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 115
Score = 44.4 bits (104), Expect = 3e-06
Identities = 13/102 (12%), Positives = 28/102 (27%), Gaps = 8/102 (7%)
Query: 135 STSGLREHRKVHAGVR-YICHACPREFSSEATMKAHVASHNGVQHACDQCDRTFSCMPYL 193
S S + + + G + C C + + + H+ + + D
Sbjct: 3 SGSSGKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSK 62
Query: 194 RQHQKLHSGIT-------YSCPSCSKSFNRKDRYRMHLKLHQ 228
+ + L C C SF +H+ +
Sbjct: 63 PRKRSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVHMIKTK 104
Score = 41.7 bits (97), Expect = 3e-05
Identities = 12/93 (12%), Positives = 29/93 (31%), Gaps = 8/93 (8%)
Query: 193 LRQHQKLHSGIT-YSCPSCSKSFNRKDRYRMHLKLHQGVRHTCKECSKEFSNEYNLKNHM 251
+ + + +G + + C CS +++ +H+ R E ++
Sbjct: 7 GKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKR 66
Query: 252 VLHD-------VRAYVCELCARQFTRVDHFNHH 277
L + + C C F + + H
Sbjct: 67 SLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVH 99
Score = 40.1 bits (93), Expect = 1e-04
Identities = 13/93 (13%), Positives = 22/93 (23%), Gaps = 8/93 (8%)
Query: 112 LKTHLKTHEG-IIYPCPECDKTFLSTSGLREHRKVHAGVRYICHACPREFSSEATMKAHV 170
K + G + C +C + + L H R H +
Sbjct: 7 GKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKR 66
Query: 171 ASHNGVQ-------HACDQCDRTFSCMPYLRQH 196
+ C C +F + L H
Sbjct: 67 SLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVH 99
Score = 37.1 bits (85), Expect = 0.001
Identities = 14/83 (16%), Positives = 20/83 (24%), Gaps = 7/83 (8%)
Query: 99 CPQCSRDFATVKILKTHLKTHEGIIYPCPECDKTFLSTSGLREHRKVHAGVR-------Y 151
C CS + T+ L H+ E D R +
Sbjct: 22 CKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLLEMEGKEDAQKVL 81
Query: 152 ICHACPREFSSEATMKAHVASHN 174
C C F S + H+
Sbjct: 82 KCMYCGHSFESLQDLSVHMIKTK 104
Score = 32.4 bits (73), Expect = 0.046
Identities = 13/85 (15%), Positives = 24/85 (28%), Gaps = 3/85 (3%)
Query: 35 CPQCSRDFATVKILKTHLKTHEGIIYPCPECDKTFLSTLTGTPQGARGRAVYLSRMSTTL 94
C CS + T+ L H+ E D + + + +
Sbjct: 22 CKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPK---RWSKPRKRSLLEMEGKEDAQ 78
Query: 95 TRHPCPQCSRDFATVKILKTHLKTH 119
C C F +++ L H+
Sbjct: 79 KVLKCMYCGHSFESLQDLSVHMIKT 103
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN
domain containing protein 16, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 77
Score = 42.4 bits (101), Expect = 6e-06
Identities = 17/64 (26%), Positives = 25/64 (39%), Gaps = 2/64 (3%)
Query: 193 LRQHQKLHSGIT-YSCPSCSKSFNRKDRYRMHLKLHQGVR-HTCKECSKEFSNEYNLKNH 250
+ + Y C C KSF+ H + H G + + C EC K F +L H
Sbjct: 6 SGRSEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGH 65
Query: 251 MVLH 254
+H
Sbjct: 66 HRVH 69
Score = 41.7 bits (99), Expect = 1e-05
Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 6/55 (10%)
Query: 180 CDQCDRTFSCMPYLRQHQKLHSGIT-YSCPSCSKSFNRKDRYRMHLKLHQGVRHT 233
CD+C ++FS L +H++ H+G Y C C K+F + R HL H V HT
Sbjct: 21 CDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQ----RSHLIGHHRV-HT 70
Score = 40.1 bits (95), Expect = 4e-05
Identities = 21/92 (22%), Positives = 33/92 (35%), Gaps = 27/92 (29%)
Query: 112 LKTHLKTHEGII-YPCPECDKTFLSTSGLREHRKVHAGVRYICHACPREFSSEATMKAHV 170
Y C EC K+F +S L +HR+ H G + P +
Sbjct: 6 SGRSEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGEK------PYK----------- 48
Query: 171 ASHNGVQHACDQCDRTFSCMPYLRQHQKLHSG 202
CD+C + F +L H ++H+G
Sbjct: 49 ---------CDECGKAFIQRSHLIGHHRVHTG 71
Score = 33.6 bits (78), Expect = 0.009
Identities = 16/64 (25%), Positives = 23/64 (35%), Gaps = 8/64 (12%)
Query: 223 HLKLHQGVRHT------CKECSKEFSNEYNLKNHMVLHD-VRAYVCELCARQFTRVDHFN 275
+ C EC K FS+ +L H H + Y C+ C + F + H
Sbjct: 5 SSGRSEWQ-QRERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLI 63
Query: 276 HHRR 279
H R
Sbjct: 64 GHHR 67
Score = 28.2 bits (64), Expect = 0.79
Identities = 25/103 (24%), Positives = 29/103 (28%), Gaps = 39/103 (37%)
Query: 48 LKTHLKTHEGII-YPCPECDKTFLSTLTGTPQGARGRAVYLSRMSTTLTRHPCPQCSRDF 106
Y C EC K+F S S
Sbjct: 6 SGRSEWQQRERRRYKCDECGKSF------------------SHSSD-------------- 33
Query: 107 ATVKILKTHLKTHEG-IIYPCPECDKTFLSTSGLREHRKVHAG 148
L H +TH G Y C EC K F+ S L H +VH G
Sbjct: 34 -----LSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTG 71
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA
binding, transcription, C2H2 type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 70
Score = 42.1 bits (100), Expect = 7e-06
Identities = 16/51 (31%), Positives = 21/51 (41%), Gaps = 1/51 (1%)
Query: 205 YSCPSCSKSFNRKDRYRMHLKLHQGVR-HTCKECSKEFSNEYNLKNHMVLH 254
C CS S + K R+H ++H R C CS + NL HM
Sbjct: 10 EKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKF 60
Score = 41.7 bits (99), Expect = 1e-05
Identities = 13/51 (25%), Positives = 21/51 (41%), Gaps = 1/51 (1%)
Query: 180 CDQCDRTFSCMPYLRQHQKLHSGI-TYSCPSCSKSFNRKDRYRMHLKLHQG 229
C +C + S LR H+++H + C CS + H+K G
Sbjct: 12 CSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFHG 62
Score = 39.4 bits (93), Expect = 6e-05
Identities = 16/79 (20%), Positives = 22/79 (27%), Gaps = 26/79 (32%)
Query: 124 YPCPECDKTFLSTSGLREHRKVHAGVRYICHACPREFSSEATMKAHVASHNGVQHACDQC 183
C EC + S + LR H ++H R P C+ C
Sbjct: 10 EKCSECSYSCSSKAALRIHERIHCTDR------P--------------------FKCNYC 43
Query: 184 DRTFSCMPYLRQHQKLHSG 202
L +H K G
Sbjct: 44 SFDTKQPSNLSKHMKKFHG 62
Score = 38.6 bits (91), Expect = 1e-04
Identities = 13/51 (25%), Positives = 20/51 (39%), Gaps = 1/51 (1%)
Query: 99 CPQCSRDFATVKILKTHLKTHEGII-YPCPECDKTFLSTSGLREHRKVHAG 148
C +CS ++ L+ H + H + C C S L +H K G
Sbjct: 12 CSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFHG 62
Score = 34.0 bits (79), Expect = 0.006
Identities = 12/47 (25%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Query: 234 CKECSKEFSNEYNLKNHMVLH-DVRAYVCELCARQFTRVDHFNHHRR 279
C ECS S++ L+ H +H R + C C+ + + + H +
Sbjct: 12 CSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMK 58
Score = 29.4 bits (67), Expect = 0.27
Identities = 8/36 (22%), Positives = 14/36 (38%), Gaps = 1/36 (2%)
Query: 35 CPQCSRDFATVKILKTHLKTHEGII-YPCPECDKTF 69
C +CS ++ L+ H + H + C C
Sbjct: 12 CSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDT 47
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces
cerevisiae} SCOP: g.37.1.1 g.37.1.1
Length = 60
Score = 41.3 bits (98), Expect = 1e-05
Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 5/57 (8%)
Query: 178 HACDQCDRTFSCMPYLRQHQKLHSGIT-YSCPSCSKSFNRKDRYRMHLKLHQGVRHT 233
C+ C R F+ +L++H + H+ Y C C+++F R+D L H H+
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRD----LLIRHAQKIHS 55
Score = 36.3 bits (85), Expect = 7e-04
Identities = 18/80 (22%), Positives = 28/80 (35%), Gaps = 27/80 (33%)
Query: 124 YPCPECDKTFLSTSGLREHRKVHAGVRYICHACPREFSSEATMKAHVASHNGVQHACDQC 183
+ C C + F L+ H + H + P + C C
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEK------P--------------------YPCGLC 36
Query: 184 DRTFSCMPYLRQH-QKLHSG 202
+R F+ L +H QK+HSG
Sbjct: 37 NRAFTRRDLLIRHAQKIHSG 56
Score = 34.0 bits (79), Expect = 0.004
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Query: 232 HTCKECSKEFSNEYNLKNHMVLH-DVRAYVCELCARQFTRVDHFNHHRRLQH 282
C+ C++ F+ + +LK H H + + Y C LC R FTR D H + H
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIH 54
Score = 27.8 bits (63), Expect = 0.72
Identities = 14/40 (35%), Positives = 18/40 (45%), Gaps = 9/40 (22%)
Query: 35 CPQCSRDFATVKILKTHLKTHEGI-----IYPCPECDKTF 69
C C+R FA + HLK H YPC C++ F
Sbjct: 5 CEVCTRAFAR----QEHLKRHYRSHTNEKPYPCGLCNRAF 40
Score = 26.3 bits (59), Expect = 2.6
Identities = 18/95 (18%), Positives = 26/95 (27%), Gaps = 47/95 (49%)
Query: 60 YPCPECDKTFLSTLTGTPQGARGRAVYLSRMSTTLTRHPCPQCSRDFATVKILKTHLKTH 119
+ C C + F +R HLK H
Sbjct: 3 FVCEVCTRAF------------------ARQE-----------------------HLKRH 21
Query: 120 EGI-----IYPCPECDKTFLSTSGLREH-RKVHAG 148
YPC C++ F L H +K+H+G
Sbjct: 22 YRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56
>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}
Length = 129
Score = 41.8 bits (97), Expect = 4e-05
Identities = 28/122 (22%), Positives = 41/122 (33%), Gaps = 5/122 (4%)
Query: 112 LKTHLKTHEGIIYPCPECDKTFLSTSGLREHRK-VHAGVRYICHACPREFSSEATMKAHV 170
K +L H+GI + L +K + + P+ + + +
Sbjct: 10 SKKYLSNHKGIF--IHVTLEELKRYHQLTPEQKRLIRAIVKTLIHNPQLLDESSYLYRLL 67
Query: 171 ASHNGVQHACDQCDRTFSCMPYLRQHQKLHSGITYSCPSCSKSFNRKDRYRMHL-KLHQG 229
AS Q C C FS L+QH + T CP C K F D H+ K H
Sbjct: 68 ASKAISQFVCPLCLMPFSSSVSLKQHIRYTEH-TKVCPVCKKEFTSTDSALDHVCKKHNI 126
Query: 230 VR 231
Sbjct: 127 CV 128
Score = 41.5 bits (96), Expect = 4e-05
Identities = 18/86 (20%), Positives = 32/86 (37%), Gaps = 1/86 (1%)
Query: 197 QKLHSGITYSCPSCSKSFNRKDRYRMHLKLHQGVRHTCKECSKEFSNEYNLKNHMVLHDV 256
++L I + + + L + C C FS+ +LK H+ +
Sbjct: 40 KRLIRAIVKTLIHNPQLLDESSYLYRLLASKAISQFVCPLCLMPFSSSVSLKQHIRYTE- 98
Query: 257 RAYVCELCARQFTRVDHFNHHRRLQH 282
VC +C ++FT D H +H
Sbjct: 99 HTKVCPVCKKEFTSTDSALDHVCKKH 124
Score = 35.7 bits (81), Expect = 0.004
Identities = 18/69 (26%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
Query: 4 LLSPTTNNPSTTNTTPTPTTQTSSTTPTRHPCPQCSRDFATVKILKTHLKTHEGIIYPCP 63
++ +NP + + +S ++ CP C F++ LK H++ E CP
Sbjct: 46 IVKTLIHNPQLLDESSYLYRLLASKAISQFVCPLCLMPFSSSVSLKQHIRYTEH-TKVCP 104
Query: 64 ECDKTFLST 72
C K F ST
Sbjct: 105 VCKKEFTST 113
Score = 29.5 bits (65), Expect = 0.69
Identities = 14/96 (14%), Positives = 28/96 (29%), Gaps = 5/96 (5%)
Query: 191 PYLRQHQKLHSGITYSCPSCSKSFNRKDRYRMHLKLHQGVRHTCKECSKEFSNEYNLKNH 250
YL H+ + I + + + +L + + T + L
Sbjct: 12 KYLSNHKGI--FIHVTLEELKRYHQLTPEQK---RLIRAIVKTLIHNPQLLDESSYLYRL 66
Query: 251 MVLHDVRAYVCELCARQFTRVDHFNHHRRLQHDPEE 286
+ + +VC LC F+ H R +
Sbjct: 67 LASKAISQFVCPLCLMPFSSSVSLKQHIRYTEHTKV 102
>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc
finger, dimer, protein-DNA complex, cooperativity,
transcription/DNA complex; 2.35A {Mus musculus} SCOP:
g.37.1.1 g.37.1.1
Length = 73
Score = 39.6 bits (93), Expect = 7e-05
Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 4/71 (5%)
Query: 187 FSCMPYLRQHQKLHSGITYSCP--SCSKSFNRKDRYRMHLKLHQGVR-HTCKECSKEFSN 243
M L + Y+CP SC + F+R D H+++H G + C+ C + FS
Sbjct: 3 PHPMNNLLNYVVPKMR-PYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSR 61
Query: 244 EYNLKNHMVLH 254
+L H+ H
Sbjct: 62 SDHLTTHIRTH 72
Score = 39.2 bits (92), Expect = 7e-05
Identities = 16/70 (22%), Positives = 28/70 (40%), Gaps = 4/70 (5%)
Query: 211 SKSFNRKDRYRMHLKLHQGVRHTCKECSKEFSNEYNLKNHMVLHD-VRAYVCELCARQFT 269
N + ++ + + C + FS L H+ +H + + C +C R F+
Sbjct: 4 HPMNNLLNYVVPKMRPY---ACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFS 60
Query: 270 RVDHFNHHRR 279
R DH H R
Sbjct: 61 RSDHLTTHIR 70
Score = 37.3 bits (87), Expect = 4e-04
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 6/54 (11%)
Query: 181 DQCDRTFSCMPYLRQHQKLHSGIT-YSCPSCSKSFNRKDRYRMHLKLHQGVRHT 233
+ CDR FS L +H ++H+G + C C ++F+R D HL H HT
Sbjct: 25 ESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSD----HLTTHIR-THT 73
Score = 36.9 bits (86), Expect = 5e-04
Identities = 14/50 (28%), Positives = 21/50 (42%), Gaps = 1/50 (2%)
Query: 98 PCPQCSRDFATVKILKTHLKTHEGII-YPCPECDKTFLSTSGLREHRKVH 146
P C R F+ L H++ H G + C C + F + L H + H
Sbjct: 23 PVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 72
Score = 36.5 bits (85), Expect = 9e-04
Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 4/65 (6%)
Query: 112 LKTHLKTHEGIIYPCP--ECDKTFLSTSGLREHRKVHAGVR-YICHACPREFSSEATMKA 168
L ++ Y CP CD+ F + L H ++H G + + C C R FS +
Sbjct: 9 LLNYVVPKMRP-YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTT 67
Query: 169 HVASH 173
H+ +H
Sbjct: 68 HIRTH 72
Score = 30.7 bits (70), Expect = 0.075
Identities = 11/37 (29%), Positives = 16/37 (43%), Gaps = 1/37 (2%)
Query: 34 PCPQCSRDFATVKILKTHLKTHEGII-YPCPECDKTF 69
P C R F+ L H++ H G + C C + F
Sbjct: 23 PVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNF 59
Score = 29.2 bits (66), Expect = 0.31
Identities = 23/84 (27%), Positives = 30/84 (35%), Gaps = 32/84 (38%)
Query: 48 LKTHLKTHEGIIYPCP--ECDKTFLSTLTGTPQGARGRAVYLSRMSTTLTRH-------- 97
L ++ Y CP CD+ F SR S LTRH
Sbjct: 9 LLNYVVPKMRP-YACPVESCDRRF------------------SR-SDELTRHIRIHTGQK 48
Query: 98 --PCPQCSRDFATVKILKTHLKTH 119
C C R+F+ L TH++TH
Sbjct: 49 PFQCRICMRNFSRSDHLTTHIRTH 72
Score = 26.9 bits (60), Expect = 2.2
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 32 RHPCPQCSRDFATVKILKTHLKTH 55
C C R+F+ L TH++TH
Sbjct: 49 PFQCRICMRNFSRSDHLTTHIRTH 72
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET:
ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB:
3znf_A 4znf_A
Length = 57
Score = 38.9 bits (90), Expect = 8e-05
Identities = 14/54 (25%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Query: 150 RYICHACPREFSSEATMKAHVASHNGVQ-HACDQCDRTFSCMPYLRQHQKLHSG 202
+YIC C + +K H+ +H V+ + C C+ +F L +H K +
Sbjct: 1 KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAH 54
Score = 38.5 bits (89), Expect = 1e-04
Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
Query: 124 YPCPECDKTFLSTSGLREHRKVHAGVR-YICHACPREFSSEATMKAHVASHNG 175
Y C EC S L++H + H VR Y C C F ++ + H+ S
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAH 54
Score = 37.8 bits (87), Expect = 2e-04
Identities = 14/51 (27%), Positives = 21/51 (41%), Gaps = 1/51 (1%)
Query: 205 YSCPSCSKSFNRKDRYRMHLKLHQGVR-HTCKECSKEFSNEYNLKNHMVLH 254
Y C C + + H++ H VR + C C+ F + NL HM
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSK 52
Score = 37.0 bits (85), Expect = 4e-04
Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Query: 96 RHPCPQCSRDFATVKILKTHLKTHEGII-YPCPECDKTFLSTSGLREHRKVHAG 148
++ C +C +LK H++TH + Y C C+ +F + L +H K A
Sbjct: 1 KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAH 54
Score = 36.6 bits (84), Expect = 5e-04
Identities = 15/50 (30%), Positives = 21/50 (42%), Gaps = 1/50 (2%)
Query: 231 RHTCKECSKEFSNEYNLKNHMVLH-DVRAYVCELCARQFTRVDHFNHHRR 279
++ C+EC LK H+ H DVR Y C C F + H +
Sbjct: 1 KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMK 50
Score = 35.5 bits (81), Expect = 0.001
Identities = 13/54 (24%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Query: 177 QHACDQCDRTFSCMPYLRQHQKLHSGIT-YSCPSCSKSFNRKDRYRMHLKLHQG 229
++ C++C L++H + H+ + Y C C+ SF K H+K
Sbjct: 1 KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAH 54
Score = 27.8 bits (61), Expect = 0.66
Identities = 11/39 (28%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 32 RHPCPQCSRDFATVKILKTHLKTHEGII-YPCPECDKTF 69
++ C +C +LK H++TH + Y C C+ +F
Sbjct: 1 KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSF 39
Score = 25.1 bits (54), Expect = 6.2
Identities = 13/62 (20%), Positives = 18/62 (29%), Gaps = 9/62 (14%)
Query: 60 YPCPECDKTFLSTLTGTPQGARGRAVYLSRMSTTLTRHPCPQCSRDFATVKILKTHLKTH 119
Y C EC R T + + C C+ F T L H+K+
Sbjct: 2 YICEECGIRX---------KKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSK 52
Query: 120 EG 121
Sbjct: 53 AH 54
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 54
Score = 37.9 bits (89), Expect = 1e-04
Identities = 16/55 (29%), Positives = 19/55 (34%), Gaps = 11/55 (20%)
Query: 196 HQKLHSGIT-YSCPSCSKSFNRKDRYRMHLKLHQGVRHT------CKECSKEFSN 243
S Y C SC K F+R D HL H HT C+ S+
Sbjct: 3 SGSSGSVGKPYICQSCGKGFSRPD----HLNGHIKQVHTSERPHKCQVWVSGPSS 53
Score = 34.5 bits (80), Expect = 0.003
Identities = 13/41 (31%), Positives = 16/41 (39%), Gaps = 2/41 (4%)
Query: 124 YPCPECDKTFLSTSGLREH-RKVHAGVR-YICHACPREFSS 162
Y C C K F L H ++VH R + C SS
Sbjct: 13 YICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPSS 53
Score = 29.5 bits (67), Expect = 0.14
Identities = 8/38 (21%), Positives = 16/38 (42%), Gaps = 2/38 (5%)
Query: 180 CDQCDRTFSCMPYLRQH-QKLHSG-ITYSCPSCSKSFN 215
C C + FS +L H +++H+ + C +
Sbjct: 15 CQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPS 52
Score = 27.5 bits (62), Expect = 0.78
Identities = 10/40 (25%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
Query: 232 HTCKECSKEFSNEYNLKNHM-VLHD-VRAYVCELCARQFT 269
+ C+ C K FS +L H+ +H R + C++ +
Sbjct: 13 YICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPS 52
Score = 26.8 bits (60), Expect = 1.5
Identities = 7/41 (17%), Positives = 11/41 (26%), Gaps = 10/41 (24%)
Query: 35 CPQCSRDFATVKILKTHLKTHEGII------YPCPECDKTF 69
C C + F+ HL H + + C
Sbjct: 15 CQSCGKGFSR----PDHLNGHIKQVHTSERPHKCQVWVSGP 51
Score = 26.0 bits (58), Expect = 3.0
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 259 YVCELCARQFTRVDHFNHHRRLQH 282
Y+C+ C + F+R DH N H + H
Sbjct: 13 YICQSCGKGFSRPDHLNGHIKQVH 36
Score = 24.8 bits (55), Expect = 6.9
Identities = 11/50 (22%), Positives = 18/50 (36%), Gaps = 3/50 (6%)
Query: 142 HRKVHAGVR-YICHACPREFSSEATMKAHVAS-HNGVQ-HACDQCDRTFS 188
+ + YIC +C + FS + H+ H + H C S
Sbjct: 3 SGSSGSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPS 52
>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens}
Length = 46
Score = 34.4 bits (80), Expect = 0.002
Identities = 13/36 (36%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 114 THLKTHEG-IIYPCPECDKTFLSTSGLREHRKVHAG 148
+ + G + C ECD F S LR H+ VH G
Sbjct: 2 SSGSSGMGEKTWKCRECDMCFSQASSLRLHQNVHVG 37
Score = 31.4 bits (72), Expect = 0.027
Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 168 AHVASHNGVQ-HACDQCDRTFSCMPYLRQHQKLHSG 202
+ +S G + C +CD FS LR HQ +H G
Sbjct: 2 SSGSSGMGEKTWKCRECDMCFSQASSLRLHQNVHVG 37
Score = 28.3 bits (64), Expect = 0.30
Identities = 9/35 (25%), Positives = 14/35 (40%), Gaps = 1/35 (2%)
Query: 196 HQKLHSG-ITYSCPSCSKSFNRKDRYRMHLKLHQG 229
G T+ C C F++ R+H +H G
Sbjct: 3 SGSSGMGEKTWKCRECDMCFSQASSLRLHQNVHVG 37
Score = 24.4 bits (54), Expect = 7.8
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 234 CKECSKEFSNEYNLKNHMVLH 254
C+EC FS +L+ H +H
Sbjct: 15 CRECDMCFSQASSLRLHQNVH 35
>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 44
Score = 34.4 bits (79), Expect = 0.002
Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 168 AHVASHNGVQ-HACDQCDRTFSCMPYLRQHQKLHSG 202
+ +S G C +CDR F+ YL QH++ H+
Sbjct: 2 SSGSSGAGENPFKCSKCDRVFTQRNYLVQHERTHAR 37
Score = 30.6 bits (69), Expect = 0.044
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 124 YPCPECDKTFLSTSGLREHRKVHAG 148
+ C +CD+ F + L +H + HA
Sbjct: 13 FKCSKCDRVFTQRNYLVQHERTHAR 37
Score = 26.7 bits (59), Expect = 1.4
Identities = 6/36 (16%), Positives = 13/36 (36%), Gaps = 1/36 (2%)
Query: 195 QHQKLHSGIT-YSCPSCSKSFNRKDRYRMHLKLHQG 229
+G + C C + F +++ H + H
Sbjct: 2 SSGSSGAGENPFKCSKCDRVFTQRNYLVQHERTHAR 37
>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 73
Score = 35.0 bits (80), Expect = 0.003
Identities = 17/76 (22%), Positives = 28/76 (36%), Gaps = 7/76 (9%)
Query: 135 STSGLREHRKVHAGVR-YICHACPREFSSEATMKAHVASHNGVQHACDQCDRTFSCMPYL 193
S+ + +K+H G R C C F +T+ C++C + L
Sbjct: 2 SSGSSGKRQKIHLGDRSQKCSKCGIIFIRRSTLSRRKTP------MCEKCRKDSCQEAAL 55
Query: 194 RQHQKLHSGITYSCPS 209
+ + SG S PS
Sbjct: 56 NKDEGNESGKKTSGPS 71
Score = 34.6 bits (79), Expect = 0.004
Identities = 14/63 (22%), Positives = 22/63 (34%), Gaps = 7/63 (11%)
Query: 193 LRQHQKLHSGI-TYSCPSCSKSFNRKDRYRMHLKLHQGVRHTCKECSKEFSNEYNLKNHM 251
+ QK+H G + C C F R+ L + C++C K+ E L
Sbjct: 6 SGKRQKIHLGDRSQKCSKCGIIFIRR------STLSRRKTPMCEKCRKDSCQEAALNKDE 59
Query: 252 VLH 254
Sbjct: 60 GNE 62
Score = 31.9 bits (72), Expect = 0.034
Identities = 12/58 (20%), Positives = 18/58 (31%), Gaps = 7/58 (12%)
Query: 223 HLKLHQGVR-HTCKECSKEFSNEYNLKNHMVLHDVRAYVCELCARQFTRVDHFNHHRR 279
K+H G R C +C F L + +CE C + + N
Sbjct: 9 RQKIHLGDRSQKCSKCGIIFIRRSTLSRR------KTPMCEKCRKDSCQEAALNKDEG 60
Score = 26.2 bits (57), Expect = 3.5
Identities = 12/69 (17%), Positives = 19/69 (27%), Gaps = 7/69 (10%)
Query: 162 SEATMKAHVASHNGVQ-HACDQCDRTFSCMPYLRQHQKLHSGITYSCPSCSKSFNRKDRY 220
S + H G + C +C F L + + T C C K ++
Sbjct: 2 SSGSSGKRQKIHLGDRSQKCSKCGIIFIRRSTLSRRK------TPMCEKCRKDSCQEAAL 55
Query: 221 RMHLKLHQG 229
G
Sbjct: 56 NKDEGNESG 64
Score = 25.4 bits (55), Expect = 6.8
Identities = 9/50 (18%), Positives = 14/50 (28%), Gaps = 6/50 (12%)
Query: 99 CPQCSRDFATVKILKTHLKTHEGIIYPCPECDKTFLSTSGLREHRKVHAG 148
C +C F L C +C K + L + +G
Sbjct: 21 CSKCGIIFIRRSTLSRRKT------PMCEKCRKDSCQEAALNKDEGNESG 64
>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 96
Score = 35.6 bits (81), Expect = 0.003
Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Query: 99 CPQCSR-DFATVKILKTHLKTHEGIIYPCPECDKTFLSTSGLREH 142
CP C T++ LK H++ + ++ C C K S +G++ H
Sbjct: 37 CPTCQAVGRKTIEGLKKHMENCKQEMFTCHHCGKQLRSLAGMKYH 81
Score = 35.6 bits (81), Expect = 0.003
Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Query: 124 YPCPECDKTFLST-SGLREHRKVHAGVRYICHACPREFSSEATMKAHV-ASHN 174
CP C T GL++H + + CH C ++ S A MK HV A+HN
Sbjct: 35 VSCPTCQAVGRKTIEGLKKHMENCKQEMFTCHHCGKQLRSLAGMKYHVMANHN 87
Score = 30.2 bits (67), Expect = 0.22
Identities = 11/38 (28%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Query: 35 CPQCSR-DFATVKILKTHLKTHEGIIYPCPECDKTFLS 71
CP C T++ LK H++ + ++ C C K S
Sbjct: 37 CPTCQAVGRKTIEGLKKHMENCKQEMFTCHHCGKQLRS 74
Score = 29.8 bits (66), Expect = 0.31
Identities = 12/76 (15%), Positives = 22/76 (28%), Gaps = 1/76 (1%)
Query: 218 DRYRMHLKLHQGVRHTCKECSK-EFSNEYNLKNHMVLHDVRAYVCELCARQFTRVDHFNH 276
+ +L++ +C C LK HM + C C +Q + +
Sbjct: 21 LEEQWYLEIVDKGSVSCPTCQAVGRKTIEGLKKHMENCKQEMFTCHHCGKQLRSLAGMKY 80
Query: 277 HRRLQHDPEEFEKVGA 292
H H+
Sbjct: 81 HVMANHNSLPSGPSSG 96
>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 34.0 bits (77), Expect = 0.004
Identities = 14/33 (42%), Positives = 22/33 (66%)
Query: 177 QHACDQCDRTFSCMPYLRQHQKLHSGITYSCPS 209
C++C++TFSC YL QH+++H+ S PS
Sbjct: 12 CFKCNKCEKTFSCSKYLTQHERIHTRGVKSGPS 44
Score = 25.2 bits (54), Expect = 5.4
Identities = 8/24 (33%), Positives = 15/24 (62%)
Query: 124 YPCPECDKTFLSTSGLREHRKVHA 147
+ C +C+KTF + L +H ++H
Sbjct: 13 FKCNKCEKTFSCSKYLTQHERIHT 36
>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 33.3 bits (77), Expect = 0.006
Identities = 14/42 (33%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
Query: 114 THLKTHEGII-YPCPECDKTFLSTSGLREHRKVHAGVR-YIC 153
+ + G Y C +C K+F S LR H+K H G R
Sbjct: 2 SSGSSGTGEKPYKCSDCGKSFTWKSRLRIHQKCHTGERHSGP 43
Score = 29.8 bits (68), Expect = 0.085
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 180 CDQCDRTFSCMPYLRQHQKLHSG 202
C C ++F+ LR HQK H+G
Sbjct: 15 CSDCGKSFTWKSRLRIHQKCHTG 37
Score = 29.8 bits (68), Expect = 0.10
Identities = 17/45 (37%), Positives = 20/45 (44%), Gaps = 3/45 (6%)
Query: 196 HQKLHSGIT-YSCPSCSKSFNRKDRYRMHLKLHQGVRHTCKECSK 239
+G Y C C KSF K R R+H K H G RH+ S
Sbjct: 3 SGSSGTGEKPYKCSDCGKSFTWKSRLRIHQKCHTGERHS--GPSS 45
Score = 24.4 bits (54), Expect = 8.1
Identities = 8/33 (24%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Query: 223 HLKLHQGVR-HTCKECSKEFSNEYNLKNHMVLH 254
G + + C +C K F+ + L+ H H
Sbjct: 3 SGSSGTGEKPYKCSDCGKSFTWKSRLRIHQKCH 35
>1ej6_B Lambda1; icosahedral, non-equivalence, dsRNA virus, methylase,
methyltransferase, guanylyltransferase, zinc finger,
icosahedral virus; 3.60A {Reovirus SP} SCOP: i.7.1.1
PDB: 2cse_V
Length = 1275
Score = 36.8 bits (84), Expect = 0.007
Identities = 20/195 (10%), Positives = 44/195 (22%), Gaps = 35/195 (17%)
Query: 7 PTTNNPSTTNTTPTPTTQTSSTTPTRHPCPQCSRDFATVKILKTHLKTHEGIIYPCPECD 66
P T+N P + +T + + + K D
Sbjct: 45 PGTSNREQYRARPGIASVQRATESAE-LPMKNNDEGTPDKK-------------GNTRGD 90
Query: 67 KTFLSTLTGTPQGARGRAVYLSRMSTTLTRHPCPQCSRDFATVKILKTHLKTHEGIIYPC 126
+ + A ++ + + ++ ++ +EG
Sbjct: 91 LV--NEHSEAKDEADEATQKQAKDTDKSKAQVTYSDTGINNANELSRSGNVDNEGGSNQK 148
Query: 127 PECDKTFLSTSGLREHRKVHAGVRYICHACPREFSSEATMKAHVASHNGVQHACDQCDRT 186
P + +TS + G+ + +G + C C
Sbjct: 149 PMSTRIAEATSAIVSKHPARVGLP-------------------PTASSGHGYQCHVCSAV 189
Query: 187 FSCMPYLRQHQKLHS 201
L H H
Sbjct: 190 LFSPLDLDAHVASHG 204
Score = 36.4 bits (83), Expect = 0.010
Identities = 6/50 (12%), Positives = 16/50 (32%)
Query: 6 SPTTNNPSTTNTTPTPTTQTSSTTPTRHPCPQCSRDFATVKILKTHLKTH 55
+ + ++++ + C CS + L H+ +H
Sbjct: 154 IAEATSAIVSKHPARVGLPPTASSGHGYQCHVCSAVLFSPLDLDAHVASH 203
Score = 29.4 bits (65), Expect = 1.8
Identities = 9/52 (17%), Positives = 16/52 (30%), Gaps = 1/52 (1%)
Query: 204 TYSCPSCSKSFNRKDRYRMHLKLH-QGVRHTCKECSKEFSNEYNLKNHMVLH 254
T + S ++ G + C CS + +L H+ H
Sbjct: 152 TRIAEATSAIVSKHPARVGLPPTASSGHGYQCHVCSAVLFSPLDLDAHVASH 203
Score = 27.9 bits (61), Expect = 5.5
Identities = 4/27 (14%), Positives = 7/27 (25%)
Query: 257 RAYVCELCARQFTRVDHFNHHRRLQHD 283
Y C +C+ + H
Sbjct: 179 HGYQCHVCSAVLFSPLDLDAHVASHGL 205
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 48
Score = 32.6 bits (74), Expect = 0.010
Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 177 QHACDQCDRTFSCMPYLRQHQKLHSGI-TYSCPSCS 211
Q AC+ C + F + +L +H+ HSG YS S
Sbjct: 12 QVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPSS 47
Score = 31.1 bits (70), Expect = 0.034
Identities = 9/36 (25%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
Query: 231 RHTCKECSKEFSNEYNLKNHMVLH-DVRAYVCELCA 265
+ C+ C K F + Y+L H + H + Y +
Sbjct: 12 QVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPSS 47
Score = 28.0 bits (62), Expect = 0.51
Identities = 9/34 (26%), Positives = 12/34 (35%), Gaps = 1/34 (2%)
Query: 124 YPCPECDKTFLSTSGLREHRKVHAGVR-YICHAC 156
C C K F L H+ H+G + Y
Sbjct: 13 VACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPS 46
Score = 26.8 bits (59), Expect = 1.1
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 257 RAYVCELCARQFTRVDHFNHHRR 279
+ CE+C + F V H N H+
Sbjct: 11 KQVACEICGKIFRDVYHLNRHKL 33
Score = 26.1 bits (57), Expect = 2.2
Identities = 10/36 (27%), Positives = 16/36 (44%)
Query: 22 TTQTSSTTPTRHPCPQCSRDFATVKILKTHLKTHEG 57
++ +S T + C C + F V L H +H G
Sbjct: 2 SSGSSGRTRKQVACEICGKIFRDVYHLNRHKLSHSG 37
Score = 24.5 bits (53), Expect = 9.1
Identities = 8/26 (30%), Positives = 11/26 (42%)
Query: 96 RHPCPQCSRDFATVKILKTHLKTHEG 121
+ C C + F V L H +H G
Sbjct: 12 QVACEICGKIFRDVYHLNRHKLSHSG 37
>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 32.5 bits (75), Expect = 0.010
Identities = 13/44 (29%), Positives = 19/44 (43%), Gaps = 2/44 (4%)
Query: 114 THLKTHEG-IIYPCPECDKTFLSTSGLREHRKVHAGVR-YICHA 155
+ + G Y C +C K F SGL H++ H G R +
Sbjct: 2 SSGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQSHTGERHSGPSS 45
Score = 29.8 bits (68), Expect = 0.11
Identities = 11/36 (30%), Positives = 15/36 (41%), Gaps = 1/36 (2%)
Query: 195 QHQKLHSGIT-YSCPSCSKSFNRKDRYRMHLKLHQG 229
+G Y C C K+F RK +H + H G
Sbjct: 2 SSGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQSHTG 37
Score = 27.9 bits (63), Expect = 0.41
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 180 CDQCDRTFSCMPYLRQHQKLHSG 202
C C + F+ L HQ+ H+G
Sbjct: 15 CSDCGKAFTRKSGLHIHQQSHTG 37
>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens}
Length = 46
Score = 32.1 bits (74), Expect = 0.013
Identities = 12/36 (33%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 168 AHVASHNGVQ-HACDQCDRTFSCMPYLRQHQKLHSG 202
+ +S GV + C QC+++FS L HQ++H+
Sbjct: 2 SSGSSGAGVNPYKCSQCEKSFSGKLRLLVHQRMHTR 37
Score = 32.1 bits (74), Expect = 0.014
Identities = 9/36 (25%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 114 THLKTHEGII-YPCPECDKTFLSTSGLREHRKVHAG 148
+ + G+ Y C +C+K+F L H+++H
Sbjct: 2 SSGSSGAGVNPYKCSQCEKSFSGKLRLLVHQRMHTR 37
Score = 28.3 bits (64), Expect = 0.39
Identities = 11/35 (31%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 196 HQKLHSGIT-YSCPSCSKSFNRKDRYRMHLKLHQG 229
+G+ Y C C KSF+ K R +H ++H
Sbjct: 3 SGSSGAGVNPYKCSQCEKSFSGKLRLLVHQRMHTR 37
Score = 25.2 bits (56), Expect = 3.9
Identities = 10/33 (30%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Query: 223 HLKLHQGVR-HTCKECSKEFSNEYNLKNHMVLH 254
GV + C +C K FS + L H +H
Sbjct: 3 SGSSGAGVNPYKCSQCEKSFSGKLRLLVHQRMH 35
>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 32.1 bits (74), Expect = 0.016
Identities = 10/36 (27%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 114 THLKTHEG-IIYPCPECDKTFLSTSGLREHRKVHAG 148
+ + G + C EC K F + S H++ H+G
Sbjct: 2 SSGSSGSGEKPFKCEECGKGFYTNSQCYSHQRSHSG 37
Score = 29.4 bits (67), Expect = 0.13
Identities = 11/31 (35%), Positives = 15/31 (48%)
Query: 180 CDQCDRTFSCMPYLRQHQKLHSGITYSCPSC 210
C++C + F HQ+ HSG S PS
Sbjct: 15 CEECGKGFYTNSQCYSHQRSHSGEKPSGPSS 45
Score = 27.9 bits (63), Expect = 0.42
Identities = 9/36 (25%), Positives = 12/36 (33%), Gaps = 1/36 (2%)
Query: 195 QHQKLHSGIT-YSCPSCSKSFNRKDRYRMHLKLHQG 229
SG + C C K F + H + H G
Sbjct: 2 SSGSSGSGEKPFKCEECGKGFYTNSQCYSHQRSHSG 37
>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 31.9 bits (73), Expect = 0.017
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 124 YPCPECDKTFLSTSGLREHRKVHAG 148
Y C EC +TF + L +H+K+H
Sbjct: 11 YSCAECKETFSDNNRLVQHQKMHTV 35
Score = 31.5 bits (72), Expect = 0.022
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 178 HACDQCDRTFSCMPYLRQHQKLHSG 202
++C +C TFS L QHQK+H+
Sbjct: 11 YSCAECKETFSDNNRLVQHQKMHTV 35
Score = 25.7 bits (57), Expect = 2.4
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 205 YSCPSCSKSFNRKDRYRMHLKLHQG 229
YSC C ++F+ +R H K+H
Sbjct: 11 YSCAECKETFSDNNRLVQHQKMHTV 35
Score = 24.2 bits (53), Expect = 8.1
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 232 HTCKECSKEFSNEYNLKNHMVLH 254
++C EC + FS+ L H +H
Sbjct: 11 YSCAECKETFSDNNRLVQHQKMH 33
>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 31.7 bits (73), Expect = 0.020
Identities = 11/36 (30%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 114 THLKTHEG-IIYPCPECDKTFLSTSGLREHRKVHAG 148
+ + G + C +C K FL S +HR++H G
Sbjct: 2 SSGSSGHGERGHRCSDCGKFFLQASNFIQHRRIHTG 37
Score = 27.5 bits (62), Expect = 0.73
Identities = 10/35 (28%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 169 HVASHNGVQ-HACDQCDRTFSCMPYLRQHQKLHSG 202
+S +G + H C C + F QH+++H+G
Sbjct: 3 SGSSGHGERGHRCSDCGKFFLQASNFIQHRRIHTG 37
Score = 27.1 bits (61), Expect = 0.95
Identities = 10/33 (30%), Positives = 12/33 (36%), Gaps = 1/33 (3%)
Query: 223 HLKLHQGVR-HTCKECSKEFSNEYNLKNHMVLH 254
G R H C +C K F N H +H
Sbjct: 3 SGSSGHGERGHRCSDCGKFFLQASNFIQHRRIH 35
Score = 26.3 bits (59), Expect = 1.7
Identities = 8/36 (22%), Positives = 13/36 (36%), Gaps = 1/36 (2%)
Query: 195 QHQKLHSGIT-YSCPSCSKSFNRKDRYRMHLKLHQG 229
G + C C K F + + H ++H G
Sbjct: 2 SSGSSGHGERGHRCSDCGKFFLQASNFIQHRRIHTG 37
>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 31.8 bits (73), Expect = 0.021
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 169 HVASHNGVQ-HACDQCDRTFSCMPYLRQHQKLHSGITYSCPSC 210
+S +G + H CD+C + F + LR HQ++H G S PS
Sbjct: 3 SGSSGSGEKSHTCDECGKNFCYISALRIHQRVHMGEKCSGPSS 45
Score = 31.4 bits (72), Expect = 0.025
Identities = 13/35 (37%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 115 HLKTHEG-IIYPCPECDKTFLSTSGLREHRKVHAG 148
+ G + C EC K F S LR H++VH G
Sbjct: 3 SGSSGSGEKSHTCDECGKNFCYISALRIHQRVHMG 37
Score = 29.9 bits (68), Expect = 0.11
Identities = 10/35 (28%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 196 HQKLHSG-ITYSCPSCSKSFNRKDRYRMHLKLHQG 229
SG +++C C K+F R+H ++H G
Sbjct: 3 SGSSGSGEKSHTCDECGKNFCYISALRIHQRVHMG 37
Score = 27.9 bits (63), Expect = 0.45
Identities = 11/33 (33%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Query: 223 HLKLHQGVR-HTCKECSKEFSNEYNLKNHMVLH 254
G + HTC EC K F L+ H +H
Sbjct: 3 SGSSGSGEKSHTCDECGKNFCYISALRIHQRVH 35
>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 31.7 bits (73), Expect = 0.023
Identities = 12/42 (28%), Positives = 18/42 (42%), Gaps = 2/42 (4%)
Query: 114 THLKTHEG-IIYPCPECDKTFLSTSGLREHRKVHAGVR-YIC 153
+ + G + C EC K F + L H+K+H G R
Sbjct: 2 SSGSSGTGENPFICSECGKVFTHKTNLIIHQKIHTGERPSGP 43
Score = 27.5 bits (62), Expect = 0.61
Identities = 10/35 (28%), Positives = 14/35 (40%), Gaps = 1/35 (2%)
Query: 196 HQKLHSG-ITYSCPSCSKSFNRKDRYRMHLKLHQG 229
+G + C C K F K +H K+H G
Sbjct: 3 SGSSGTGENPFICSECGKVFTHKTNLIIHQKIHTG 37
Score = 27.1 bits (61), Expect = 1.00
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 180 CDQCDRTFSCMPYLRQHQKLHSG 202
C +C + F+ L HQK+H+G
Sbjct: 15 CSECGKVFTHKTNLIIHQKIHTG 37
Score = 25.1 bits (56), Expect = 4.1
Identities = 10/33 (30%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Query: 223 HLKLHQGVR-HTCKECSKEFSNEYNLKNHMVLH 254
G C EC K F+++ NL H +H
Sbjct: 3 SGSSGTGENPFICSECGKVFTHKTNLIIHQKIH 35
>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 42
Score = 31.3 bits (72), Expect = 0.025
Identities = 7/23 (30%), Positives = 13/23 (56%)
Query: 232 HTCKECSKEFSNEYNLKNHMVLH 254
+ C+ C F + LK+H+ +H
Sbjct: 12 YPCEICGTRFRHLQTLKSHLRIH 34
Score = 30.5 bits (70), Expect = 0.057
Identities = 10/35 (28%), Positives = 14/35 (40%), Gaps = 1/35 (2%)
Query: 115 HLKTHEG-IIYPCPECDKTFLSTSGLREHRKVHAG 148
+ G YPC C F L+ H ++H G
Sbjct: 2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHLRIHTG 36
Score = 29.4 bits (67), Expect = 0.14
Identities = 9/36 (25%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 168 AHVASHNGVQ-HACDQCDRTFSCMPYLRQHQKLHSG 202
S G + + C+ C F + L+ H ++H+G
Sbjct: 1 GSSGSSGGEKPYPCEICGTRFRHLQTLKSHLRIHTG 36
Score = 26.3 bits (59), Expect = 1.5
Identities = 9/35 (25%), Positives = 12/35 (34%), Gaps = 1/35 (2%)
Query: 196 HQKLHSG-ITYSCPSCSKSFNRKDRYRMHLKLHQG 229
G Y C C F + HL++H G
Sbjct: 2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHLRIHTG 36
Score = 25.5 bits (57), Expect = 2.8
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 33 HPCPQCSRDFATVKILKTHLKTHEG 57
+PC C F ++ LK+HL+ H G
Sbjct: 12 YPCEICGTRFRHLQTLKSHLRIHTG 36
Score = 25.5 bits (57), Expect = 2.8
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 97 HPCPQCSRDFATVKILKTHLKTHEG 121
+PC C F ++ LK+HL+ H G
Sbjct: 12 YPCEICGTRFRHLQTLKSHLRIHTG 36
>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 31.3 bits (72), Expect = 0.026
Identities = 12/44 (27%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 114 THLKTHEG-IIYPCPECDKTFLSTSGLREHRKVHAGVR-YICHA 155
+ + G ++ C EC KTF +S L H+++H G + +
Sbjct: 2 SSGSSGAGKKLFKCNECKKTFTQSSSLTVHQRIHTGEKPSGPSS 45
Score = 29.8 bits (68), Expect = 0.11
Identities = 9/23 (39%), Positives = 16/23 (69%)
Query: 180 CDQCDRTFSCMPYLRQHQKLHSG 202
C++C +TF+ L HQ++H+G
Sbjct: 15 CNECKKTFTQSSSLTVHQRIHTG 37
Score = 26.7 bits (60), Expect = 1.2
Identities = 10/39 (25%), Positives = 16/39 (41%), Gaps = 6/39 (15%)
Query: 196 HQKLHSGIT-YSCPSCSKSFNRKDRYRMHLKLHQGVRHT 233
+G + C C K+F + L +HQ + HT
Sbjct: 3 SGSSGAGKKLFKCNECKKTFTQS----SSLTVHQRI-HT 36
Score = 24.4 bits (54), Expect = 8.1
Identities = 9/33 (27%), Positives = 13/33 (39%), Gaps = 1/33 (3%)
Query: 223 HLKLHQGVR-HTCKECSKEFSNEYNLKNHMVLH 254
G + C EC K F+ +L H +H
Sbjct: 3 SGSSGAGKKLFKCNECKKTFTQSSSLTVHQRIH 35
>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 31.4 bits (72), Expect = 0.026
Identities = 12/44 (27%), Positives = 17/44 (38%), Gaps = 2/44 (4%)
Query: 114 THLKTHEG-IIYPCPECDKTFLSTSGLREHRKVHAGVR-YICHA 155
+ + G Y C EC K F+ L H VH G + +
Sbjct: 2 SSGSSGTGEKPYKCEECGKGFICRRDLYTHHMVHTGEKPSGPSS 45
Score = 29.0 bits (66), Expect = 0.20
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 180 CDQCDRTFSCMPYLRQHQKLHSG 202
C++C + F C L H +H+G
Sbjct: 15 CEECGKGFICRRDLYTHHMVHTG 37
Score = 26.7 bits (60), Expect = 1.4
Identities = 9/35 (25%), Positives = 12/35 (34%), Gaps = 1/35 (2%)
Query: 196 HQKLHSGIT-YSCPSCSKSFNRKDRYRMHLKLHQG 229
+G Y C C K F + H +H G
Sbjct: 3 SGSSGTGEKPYKCEECGKGFICRRDLYTHHMVHTG 37
Score = 25.2 bits (56), Expect = 4.7
Identities = 9/33 (27%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Query: 223 HLKLHQGVR-HTCKECSKEFSNEYNLKNHMVLH 254
G + + C+EC K F +L H ++H
Sbjct: 3 SGSSGTGEKPYKCEECGKGFICRRDLYTHHMVH 35
>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 31.4 bits (72), Expect = 0.027
Identities = 12/35 (34%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 169 HVASHNGVQ-HACDQCDRTFSCMPYLRQHQKLHSG 202
+S + + H C +C R F+ +L QHQ++H+G
Sbjct: 3 SGSSGSSTKSHQCHECGRGFTLKSHLNQHQRIHTG 37
Score = 29.1 bits (66), Expect = 0.20
Identities = 9/36 (25%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 114 THLKTHEGII-YPCPECDKTFLSTSGLREHRKVHAG 148
+ + + C EC + F S L +H+++H G
Sbjct: 2 SSGSSGSSTKSHQCHECGRGFTLKSHLNQHQRIHTG 37
Score = 26.0 bits (58), Expect = 2.0
Identities = 11/40 (27%), Positives = 14/40 (35%), Gaps = 6/40 (15%)
Query: 195 QHQKLHSGIT-YSCPSCSKSFNRKDRYRMHLKLHQGVRHT 233
S + C C + F K HL HQ + HT
Sbjct: 2 SSGSSGSSTKSHQCHECGRGFTLKS----HLNQHQRI-HT 36
Score = 24.4 bits (54), Expect = 7.3
Identities = 8/33 (24%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Query: 223 HLKLHQGVR-HTCKECSKEFSNEYNLKNHMVLH 254
+ H C EC + F+ + +L H +H
Sbjct: 3 SGSSGSSTKSHQCHECGRGFTLKSHLNQHQRIH 35
>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 31.4 bits (72), Expect = 0.029
Identities = 12/44 (27%), Positives = 19/44 (43%), Gaps = 2/44 (4%)
Query: 114 THLKTHEG-IIYPCPECDKTFLSTSGLREHRKVHAGVR-YICHA 155
+ + G + C EC K F S L H++VH G + +
Sbjct: 2 SSGSSGSGEKPFQCEECGKRFTQNSHLHSHQRVHTGEKPSGPSS 45
Score = 29.4 bits (67), Expect = 0.13
Identities = 13/40 (32%), Positives = 15/40 (37%), Gaps = 6/40 (15%)
Query: 195 QHQKLHSGIT-YSCPSCSKSFNRKDRYRMHLKLHQGVRHT 233
SG + C C K F + HL HQ V HT
Sbjct: 2 SSGSSGSGEKPFQCEECGKRFTQNS----HLHSHQRV-HT 36
Score = 29.1 bits (66), Expect = 0.20
Identities = 8/23 (34%), Positives = 16/23 (69%)
Query: 180 CDQCDRTFSCMPYLRQHQKLHSG 202
C++C + F+ +L HQ++H+G
Sbjct: 15 CEECGKRFTQNSHLHSHQRVHTG 37
>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 31.3 bits (72), Expect = 0.030
Identities = 9/36 (25%), Positives = 15/36 (41%), Gaps = 1/36 (2%)
Query: 114 THLKTHEG-IIYPCPECDKTFLSTSGLREHRKVHAG 148
+ + Y C +C K + L H++VH G
Sbjct: 2 SSGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRVHMG 37
Score = 30.5 bits (70), Expect = 0.055
Identities = 11/36 (30%), Positives = 15/36 (41%), Gaps = 1/36 (2%)
Query: 195 QHQKLHSGIT-YSCPSCSKSFNRKDRYRMHLKLHQG 229
S Y C C K +NR+ MH ++H G
Sbjct: 2 SSGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRVHMG 37
Score = 27.8 bits (63), Expect = 0.49
Identities = 7/23 (30%), Positives = 13/23 (56%)
Query: 180 CDQCDRTFSCMPYLRQHQKLHSG 202
C+ C + ++ L HQ++H G
Sbjct: 15 CEDCGKGYNRRLNLDMHQRVHMG 37
Score = 25.9 bits (58), Expect = 2.4
Identities = 7/33 (21%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Query: 223 HLKLHQGVR-HTCKECSKEFSNEYNLKNHMVLH 254
+ + C++C K ++ NL H +H
Sbjct: 3 SGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRVH 35
>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 44
Score = 31.4 bits (72), Expect = 0.030
Identities = 10/33 (30%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 124 YPCPECDKTFLSTSGLREHRKVHAGVR-YICHA 155
+ C C+K F S S L H++ HA + +
Sbjct: 11 FGCSCCEKAFSSKSYLLVHQQTHAEEKPSGPSS 43
Score = 31.0 bits (71), Expect = 0.042
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 178 HACDQCDRTFSCMPYLRQHQKLHSG 202
C C++ FS YL HQ+ H+
Sbjct: 11 FGCSCCEKAFSSKSYLLVHQQTHAE 35
>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A
Length = 46
Score = 31.3 bits (72), Expect = 0.032
Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Query: 114 THLKTHEGII-YPCPECDKTFLSTSGLREHRKVHAGVR-YICHA 155
+ + G+ Y C +C KTF S L H++ H GV+ +
Sbjct: 2 SSGSSGTGVKPYGCSQCAKTFSLKSQLIVHQRSHTGVKPSGPSS 45
Score = 29.4 bits (67), Expect = 0.12
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 168 AHVASHNGVQ-HACDQCDRTFSCMPYLRQHQKLHSG 202
+ +S GV+ + C QC +TFS L HQ+ H+G
Sbjct: 2 SSGSSGTGVKPYGCSQCAKTFSLKSQLIVHQRSHTG 37
Score = 27.5 bits (62), Expect = 0.62
Identities = 10/35 (28%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 196 HQKLHSGI-TYSCPSCSKSFNRKDRYRMHLKLHQG 229
+G+ Y C C+K+F+ K + +H + H G
Sbjct: 3 SGSSGTGVKPYGCSQCAKTFSLKSQLIVHQRSHTG 37
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 34.8 bits (79), Expect = 0.032
Identities = 11/95 (11%), Positives = 22/95 (23%), Gaps = 24/95 (25%)
Query: 210 CSKSFNRKDRYRMHLKLHQGVRHTCKECSKEFS------NEYNLK-----NHMVLHDVRA 258
S K + + + E++ + YN+ + ++ +
Sbjct: 412 HKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQ 471
Query: 259 YVCELCARQFTRVDHFNHH---RRLQHDPEEFEKV 290
Y H HH F V
Sbjct: 472 YFYS----------HIGHHLKNIEHPERMTLFRMV 496
Score = 31.0 bits (69), Expect = 0.56
Identities = 14/87 (16%), Positives = 22/87 (25%), Gaps = 7/87 (8%)
Query: 51 HLK----THEGIIYPCPECDKTFLST---LTGTPQGARGRAVYLSRMSTTLTRHPCPQCS 103
HLK ++ D FL T A G + + + C
Sbjct: 480 HLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDP 539
Query: 104 RDFATVKILKTHLKTHEGIIYPCPECD 130
+ V + L E + D
Sbjct: 540 KYERLVNAILDFLPKIEENLICSKYTD 566
Score = 28.7 bits (63), Expect = 3.3
Identities = 8/57 (14%), Positives = 13/57 (22%), Gaps = 8/57 (14%)
Query: 18 TPTPTTQTSSTTPT--------RHPCPQCSRDFATVKILKTHLKTHEGIIYPCPECD 66
T + S T + C + V + L E + D
Sbjct: 510 DSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTD 566
>3iyl_X VP3; non-enveloped virus, membrane penetration protein, autocleav
myristol group, icosahedral virus; HET: MYR; 3.30A
{Grass carp reovirus} PDB: 3k1q_C 3k1q_B
Length = 1214
Score = 34.8 bits (79), Expect = 0.033
Identities = 18/120 (15%), Positives = 35/120 (29%), Gaps = 4/120 (3%)
Query: 7 PTTNNPSTTNTTPTPTTQTSSTTPTRHPC---PQCSRDFATVKILKTHLKTHEGIIYPCP 63
P + P+T + T + ++ + S A + ++G I P
Sbjct: 23 PAKDAPTTNSPPSTTSPNQAAADANQQQAGIVSSQSGPNAVGDSAPSSSVNNDGDIITRP 82
Query: 64 ECDKTFLSTLTGTP-QGARGRAVYLSRMSTTLTRHPCPQCSRDFATVKILKTHLKTHEGI 122
D P + + C C+ F+T+ L HL++
Sbjct: 83 TSDSIAAVANATKPAAVVSDPQSMKVTPIVNPSSYVCNVCNARFSTMSALSEHLRSDHRD 142
Score = 29.4 bits (65), Expect = 1.6
Identities = 7/33 (21%), Positives = 15/33 (45%)
Query: 144 KVHAGVRYICHACPREFSSEATMKAHVASHNGV 176
+ Y+C+ C FS+ + + H+ S +
Sbjct: 110 PIVNPSSYVCNVCNARFSTMSALSEHLRSDHRD 142
Score = 29.0 bits (64), Expect = 2.0
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 258 AYVCELCARQFTRVDHFNHHRRLQH 282
+YVC +C +F+ + + H R H
Sbjct: 116 SYVCNVCNARFSTMSALSEHLRSDH 140
>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 31.0 bits (71), Expect = 0.034
Identities = 10/35 (28%), Positives = 13/35 (37%), Gaps = 1/35 (2%)
Query: 115 HLKTHEGII-YPCPECDKTFLSTSGLREHRKVHAG 148
+ Y C EC K F L H+K+H
Sbjct: 3 SGSSGTDSKSYNCNECGKAFTRIFHLTRHQKIHTR 37
Score = 30.6 bits (70), Expect = 0.048
Identities = 9/36 (25%), Positives = 13/36 (36%), Gaps = 1/36 (2%)
Query: 195 QHQKLHSGIT-YSCPSCSKSFNRKDRYRMHLKLHQG 229
+ Y+C C K+F R H K+H
Sbjct: 2 SSGSSGTDSKSYNCNECGKAFTRIFHLTRHQKIHTR 37
Score = 29.9 bits (68), Expect = 0.085
Identities = 8/23 (34%), Positives = 17/23 (73%)
Query: 180 CDQCDRTFSCMPYLRQHQKLHSG 202
C++C + F+ + +L +HQK+H+
Sbjct: 15 CNECGKAFTRIFHLTRHQKIHTR 37
Score = 25.2 bits (56), Expect = 3.6
Identities = 8/33 (24%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Query: 223 HLKLHQGVR-HTCKECSKEFSNEYNLKNHMVLH 254
+ + C EC K F+ ++L H +H
Sbjct: 3 SGSSGTDSKSYNCNECGKAFTRIFHLTRHQKIH 35
>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 31.0 bits (71), Expect = 0.036
Identities = 13/44 (29%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Query: 114 THLKTHEG-IIYPCPECDKTFLSTSGLREHRKVHAGVR-YICHA 155
+ + G Y C EC K F S L H+++H GV+ +
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLANHQRIHTGVKPSGPSS 45
Score = 29.4 bits (67), Expect = 0.12
Identities = 8/23 (34%), Positives = 16/23 (69%)
Query: 180 CDQCDRTFSCMPYLRQHQKLHSG 202
C++C + F+ +L HQ++H+G
Sbjct: 15 CNECGKVFTQNSHLANHQRIHTG 37
Score = 27.1 bits (61), Expect = 0.94
Identities = 12/39 (30%), Positives = 15/39 (38%), Gaps = 6/39 (15%)
Query: 196 HQKLHSGIT-YSCPSCSKSFNRKDRYRMHLKLHQGVRHT 233
+G Y C C K F + HL HQ + HT
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQN----SHLANHQRI-HT 36
>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 31.0 bits (71), Expect = 0.038
Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 168 AHVASHNGVQ-HACDQCDRTFSCMPYLRQHQKLHSG 202
+ +S G + + C +C + FS YL H + HSG
Sbjct: 2 SSGSSGAGEKPYGCSECGKAFSSKSYLIIHMRTHSG 37
Score = 29.8 bits (68), Expect = 0.093
Identities = 13/36 (36%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 114 THLKTHEG-IIYPCPECDKTFLSTSGLREHRKVHAG 148
+ + G Y C EC K F S S L H + H+G
Sbjct: 2 SSGSSGAGEKPYGCSECGKAFSSKSYLIIHMRTHSG 37
Score = 26.7 bits (60), Expect = 1.0
Identities = 10/36 (27%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
Query: 195 QHQKLHSGIT-YSCPSCSKSFNRKDRYRMHLKLHQG 229
+G Y C C K+F+ K +H++ H G
Sbjct: 2 SSGSSGAGEKPYGCSECGKAFSSKSYLIIHMRTHSG 37
>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A
Length = 46
Score = 31.0 bits (71), Expect = 0.040
Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 114 THLKTHEG-IIYPCPECDKTFLSTSGLREHRKVHAG 148
+ + G Y C EC K+F S L +H++VH+G
Sbjct: 2 SSGSSGTGEKPYNCKECGKSFRWASCLLKHQRVHSG 37
Score = 29.8 bits (68), Expect = 0.085
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 180 CDQCDRTFSCMPYLRQHQKLHSG 202
C +C ++F L +HQ++HSG
Sbjct: 15 CKECGKSFRWASCLLKHQRVHSG 37
Score = 26.8 bits (60), Expect = 1.4
Identities = 10/43 (23%), Positives = 15/43 (34%), Gaps = 2/43 (4%)
Query: 196 HQKLHSGIT-YSCPSCSKSFNRKDRYRMHLKLHQGVR-HTCKE 236
+G Y+C C KSF H ++H G +
Sbjct: 3 SGSSGTGEKPYNCKECGKSFRWASCLLKHQRVHSGEKPSGPSS 45
Score = 24.5 bits (54), Expect = 8.0
Identities = 10/33 (30%), Positives = 13/33 (39%), Gaps = 1/33 (3%)
Query: 223 HLKLHQGVR-HTCKECSKEFSNEYNLKNHMVLH 254
G + + CKEC K F L H +H
Sbjct: 3 SGSSGTGEKPYNCKECGKSFRWASCLLKHQRVH 35
>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 30.6 bits (70), Expect = 0.043
Identities = 12/44 (27%), Positives = 19/44 (43%), Gaps = 2/44 (4%)
Query: 114 THLKTHEG-IIYPCPECDKTFLSTSGLREHRKVHAGVR-YICHA 155
+ + G Y C EC K F S +H+++H G R +
Sbjct: 2 SSGSSGTGEKPYKCMECGKAFGDNSSCTQHQRLHTGQRPSGPSS 45
Score = 28.7 bits (65), Expect = 0.27
Identities = 11/36 (30%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 168 AHVASHNGVQ-HACDQCDRTFSCMPYLRQHQKLHSG 202
+ +S G + + C +C + F QHQ+LH+G
Sbjct: 2 SSGSSGTGEKPYKCMECGKAFGDNSSCTQHQRLHTG 37
Score = 26.4 bits (59), Expect = 1.6
Identities = 10/35 (28%), Positives = 13/35 (37%), Gaps = 1/35 (2%)
Query: 196 HQKLHSGIT-YSCPSCSKSFNRKDRYRMHLKLHQG 229
+G Y C C K+F H +LH G
Sbjct: 3 SGSSGTGEKPYKCMECGKAFGDNSSCTQHQRLHTG 37
Score = 25.2 bits (56), Expect = 3.7
Identities = 9/33 (27%), Positives = 13/33 (39%), Gaps = 1/33 (3%)
Query: 223 HLKLHQGVR-HTCKECSKEFSNEYNLKNHMVLH 254
G + + C EC K F + + H LH
Sbjct: 3 SGSSGTGEKPYKCMECGKAFGDNSSCTQHQRLH 35
>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} PDB: 2yta_A
Length = 42
Score = 30.7 bits (70), Expect = 0.043
Identities = 7/25 (28%), Positives = 12/25 (48%)
Query: 124 YPCPECDKTFLSTSGLREHRKVHAG 148
Y C +C K+F L H++ +
Sbjct: 12 YLCGQCGKSFTQRGSLAVHQRSCSQ 36
Score = 28.8 bits (65), Expect = 0.18
Identities = 10/36 (27%), Positives = 15/36 (41%), Gaps = 1/36 (2%)
Query: 168 AHVASHNGVQ-HACDQCDRTFSCMPYLRQHQKLHSG 202
S G + C QC ++F+ L HQ+ S
Sbjct: 1 GSSGSSGGETPYLCGQCGKSFTQRGSLAVHQRSCSQ 36
Score = 25.3 bits (56), Expect = 3.9
Identities = 9/35 (25%), Positives = 13/35 (37%), Gaps = 1/35 (2%)
Query: 196 HQKLHSGIT-YSCPSCSKSFNRKDRYRMHLKLHQG 229
G T Y C C KSF ++ +H +
Sbjct: 2 SSGSSGGETPYLCGQCGKSFTQRGSLAVHQRSCSQ 36
Score = 25.3 bits (56), Expect = 4.0
Identities = 6/23 (26%), Positives = 10/23 (43%)
Query: 232 HTCKECSKEFSNEYNLKNHMVLH 254
+ C +C K F+ +L H
Sbjct: 12 YLCGQCGKSFTQRGSLAVHQRSC 34
>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 31.0 bits (71), Expect = 0.043
Identities = 13/44 (29%), Positives = 19/44 (43%), Gaps = 2/44 (4%)
Query: 114 THLKTHEGII-YPCPECDKTFLSTSGLREHRKVHAGVR-YICHA 155
+ + G Y C +C K + S L H+KVH G R +
Sbjct: 2 SSGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKVHTGERPSGPSS 45
Score = 29.0 bits (66), Expect = 0.21
Identities = 8/23 (34%), Positives = 15/23 (65%)
Query: 180 CDQCDRTFSCMPYLRQHQKLHSG 202
C++C + ++ L HQK+H+G
Sbjct: 15 CEKCGKGYNSKFNLDMHQKVHTG 37
Score = 27.9 bits (63), Expect = 0.41
Identities = 12/35 (34%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 196 HQKLHSGIT-YSCPSCSKSFNRKDRYRMHLKLHQG 229
+G Y C C K +N K MH K+H G
Sbjct: 3 SGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKVHTG 37
Score = 26.0 bits (58), Expect = 2.2
Identities = 8/33 (24%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 223 HLKLHQGVR-HTCKECSKEFSNEYNLKNHMVLH 254
G + + C++C K +++++NL H +H
Sbjct: 3 SGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKVH 35
>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 46
Score = 30.6 bits (70), Expect = 0.046
Identities = 13/36 (36%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 114 THLKTHEGII-YPCPECDKTFLSTSGLREHRKVHAG 148
+ + G Y C EC K F + S L HR+ H G
Sbjct: 2 SSGSSGTGQRPYECIECGKAFKTKSSLICHRRSHTG 37
Score = 28.3 bits (64), Expect = 0.33
Identities = 10/44 (22%), Positives = 14/44 (31%), Gaps = 2/44 (4%)
Query: 195 QHQKLHSGIT-YSCPSCSKSFNRKDRYRMHLKLHQGVR-HTCKE 236
+G Y C C K+F K H + H G +
Sbjct: 2 SSGSSGTGQRPYECIECGKAFKTKSSLICHRRSHTGEKPSGPSS 45
Score = 28.3 bits (64), Expect = 0.35
Identities = 7/23 (30%), Positives = 12/23 (52%)
Query: 180 CDQCDRTFSCMPYLRQHQKLHSG 202
C +C + F L H++ H+G
Sbjct: 15 CIECGKAFKTKSSLICHRRSHTG 37
>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 30.6 bits (70), Expect = 0.047
Identities = 12/36 (33%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 114 THLKTHEG-IIYPCPECDKTFLSTSGLREHRKVHAG 148
+ + G + C EC K F S L H++VH G
Sbjct: 2 SSGSSGSGEKPFKCEECGKRFTQNSQLHSHQRVHTG 37
Score = 27.9 bits (63), Expect = 0.43
Identities = 8/23 (34%), Positives = 15/23 (65%)
Query: 180 CDQCDRTFSCMPYLRQHQKLHSG 202
C++C + F+ L HQ++H+G
Sbjct: 15 CEECGKRFTQNSQLHSHQRVHTG 37
Score = 27.1 bits (61), Expect = 0.78
Identities = 12/39 (30%), Positives = 14/39 (35%), Gaps = 6/39 (15%)
Query: 196 HQKLHSGIT-YSCPSCSKSFNRKDRYRMHLKLHQGVRHT 233
SG + C C K F + L HQ V HT
Sbjct: 3 SGSSGSGEKPFKCEECGKRFTQN----SQLHSHQRV-HT 36
Score = 24.4 bits (54), Expect = 8.7
Identities = 9/33 (27%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Query: 223 HLKLHQGVR-HTCKECSKEFSNEYNLKNHMVLH 254
G + C+EC K F+ L +H +H
Sbjct: 3 SGSSGSGEKPFKCEECGKRFTQNSQLHSHQRVH 35
>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 30.6 bits (70), Expect = 0.047
Identities = 12/42 (28%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
Query: 114 THLKTHEG-IIYPCPECDKTFLSTSGLREHRKVHAGVR-YIC 153
+ + G Y C EC K F+ S L H+++H G +
Sbjct: 2 SSGSSGTGERHYECSECGKAFIQKSTLSMHQRIHRGEKPSGP 43
Score = 29.0 bits (66), Expect = 0.16
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 180 CDQCDRTFSCMPYLRQHQKLHSG 202
C +C + F L HQ++H G
Sbjct: 15 CSECGKAFIQKSTLSMHQRIHRG 37
Score = 28.6 bits (65), Expect = 0.27
Identities = 11/36 (30%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 195 QHQKLHSGIT-YSCPSCSKSFNRKDRYRMHLKLHQG 229
+G Y C C K+F +K MH ++H+G
Sbjct: 2 SSGSSGTGERHYECSECGKAFIQKSTLSMHQRIHRG 37
>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 30.6 bits (70), Expect = 0.047
Identities = 11/36 (30%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 114 THLKTHEG-IIYPCPECDKTFLSTSGLREHRKVHAG 148
+ + G +Y C EC K+F L +H ++H+G
Sbjct: 2 SSGSSGTGEKLYNCKECGKSFSRAPCLLKHERLHSG 37
Score = 28.6 bits (65), Expect = 0.26
Identities = 11/23 (47%), Positives = 17/23 (73%)
Query: 180 CDQCDRTFSCMPYLRQHQKLHSG 202
C +C ++FS P L +H++LHSG
Sbjct: 15 CKECGKSFSRAPCLLKHERLHSG 37
Score = 26.7 bits (60), Expect = 1.1
Identities = 12/35 (34%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 196 HQKLHSGIT-YSCPSCSKSFNRKDRYRMHLKLHQG 229
+G Y+C C KSF+R H +LH G
Sbjct: 3 SGSSGTGEKLYNCKECGKSFSRAPCLLKHERLHSG 37
Score = 26.3 bits (59), Expect = 1.7
Identities = 12/33 (36%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Query: 223 HLKLHQGVR-HTCKECSKEFSNEYNLKNHMVLH 254
G + + CKEC K FS L H LH
Sbjct: 3 SGSSGTGEKLYNCKECGKSFSRAPCLLKHERLH 35
>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2ena_A 2en4_A
Length = 46
Score = 30.6 bits (70), Expect = 0.052
Identities = 12/36 (33%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
Query: 114 THLKTHEG-IIYPCPECDKTFLSTSGLREHRKVHAG 148
+ + G + C EC K F S L H K+H G
Sbjct: 2 SSGSSGTGEKPFKCVECGKGFSRRSALNVHHKLHTG 37
Score = 29.0 bits (66), Expect = 0.19
Identities = 10/23 (43%), Positives = 13/23 (56%)
Query: 180 CDQCDRTFSCMPYLRQHQKLHSG 202
C +C + FS L H KLH+G
Sbjct: 15 CVECGKGFSRRSALNVHHKLHTG 37
Score = 28.3 bits (64), Expect = 0.31
Identities = 11/36 (30%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
Query: 195 QHQKLHSGIT-YSCPSCSKSFNRKDRYRMHLKLHQG 229
+G + C C K F+R+ +H KLH G
Sbjct: 2 SSGSSGTGEKPFKCVECGKGFSRRSALNVHHKLHTG 37
Score = 24.8 bits (55), Expect = 5.7
Identities = 11/33 (33%), Positives = 12/33 (36%), Gaps = 1/33 (3%)
Query: 223 HLKLHQGVR-HTCKECSKEFSNEYNLKNHMVLH 254
G + C EC K FS L H LH
Sbjct: 3 SGSSGTGEKPFKCVECGKGFSRRSALNVHHKLH 35
>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 30.6 bits (70), Expect = 0.055
Identities = 12/36 (33%), Positives = 13/36 (36%), Gaps = 1/36 (2%)
Query: 195 QHQKLHSG-ITYSCPSCSKSFNRKDRYRMHLKLHQG 229
SG Y C C K+F R HLK H
Sbjct: 2 SSGSSGSGERPYGCNECGKNFGRHSHLIEHLKRHFR 37
Score = 30.2 bits (69), Expect = 0.061
Identities = 12/25 (48%), Positives = 12/25 (48%)
Query: 124 YPCPECDKTFLSTSGLREHRKVHAG 148
Y C EC K F S L EH K H
Sbjct: 13 YGCNECGKNFGRHSHLIEHLKRHFR 37
Score = 28.3 bits (64), Expect = 0.39
Identities = 7/23 (30%), Positives = 12/23 (52%)
Query: 180 CDQCDRTFSCMPYLRQHQKLHSG 202
C++C + F +L +H K H
Sbjct: 15 CNECGKNFGRHSHLIEHLKRHFR 37
Score = 25.6 bits (57), Expect = 3.2
Identities = 10/33 (30%), Positives = 13/33 (39%), Gaps = 1/33 (3%)
Query: 223 HLKLHQGVR-HTCKECSKEFSNEYNLKNHMVLH 254
G R + C EC K F +L H+ H
Sbjct: 3 SGSSGSGERPYGCNECGKNFGRHSHLIEHLKRH 35
>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 30.6 bits (70), Expect = 0.056
Identities = 11/36 (30%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
Query: 114 THLKTHEG-IIYPCPECDKTFLSTSGLREHRKVHAG 148
+ + EG Y C EC K+F + L +H H
Sbjct: 2 SSGSSGEGEKPYQCSECGKSFSGSYRLTQHWITHTR 37
Score = 28.7 bits (65), Expect = 0.28
Identities = 10/36 (27%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 168 AHVASHNGVQ-HACDQCDRTFSCMPYLRQHQKLHSG 202
+ +S G + + C +C ++FS L QH H+
Sbjct: 2 SSGSSGEGEKPYQCSECGKSFSGSYRLTQHWITHTR 37
Score = 26.7 bits (60), Expect = 1.3
Identities = 10/36 (27%), Positives = 11/36 (30%), Gaps = 1/36 (2%)
Query: 195 QHQKLHSG-ITYSCPSCSKSFNRKDRYRMHLKLHQG 229
G Y C C KSF+ R H H
Sbjct: 2 SSGSSGEGEKPYQCSECGKSFSGSYRLTQHWITHTR 37
Score = 26.7 bits (60), Expect = 1.4
Identities = 11/33 (33%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Query: 223 HLKLHQGVR-HTCKECSKEFSNEYNLKNHMVLH 254
+G + + C EC K FS Y L H + H
Sbjct: 3 SGSSGEGEKPYQCSECGKSFSGSYRLTQHWITH 35
>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 30.6 bits (70), Expect = 0.056
Identities = 8/36 (22%), Positives = 14/36 (38%), Gaps = 1/36 (2%)
Query: 114 THLKTHEGII-YPCPECDKTFLSTSGLREHRKVHAG 148
+ + G + C EC F + L +H + H
Sbjct: 2 SSGSSGTGEKPFQCKECGMNFSWSCSLFKHLRSHER 37
Score = 28.3 bits (64), Expect = 0.32
Identities = 9/36 (25%), Positives = 15/36 (41%), Gaps = 1/36 (2%)
Query: 168 AHVASHNGVQ-HACDQCDRTFSCMPYLRQHQKLHSG 202
+ +S G + C +C FS L +H + H
Sbjct: 2 SSGSSGTGEKPFQCKECGMNFSWSCSLFKHLRSHER 37
Score = 27.2 bits (61), Expect = 0.84
Identities = 7/36 (19%), Positives = 13/36 (36%), Gaps = 1/36 (2%)
Query: 195 QHQKLHSGIT-YSCPSCSKSFNRKDRYRMHLKLHQG 229
+G + C C +F+ HL+ H+
Sbjct: 2 SSGSSGTGEKPFQCKECGMNFSWSCSLFKHLRSHER 37
Score = 26.4 bits (59), Expect = 1.5
Identities = 9/23 (39%), Positives = 11/23 (47%)
Query: 232 HTCKECSKEFSNEYNLKNHMVLH 254
CKEC FS +L H+ H
Sbjct: 13 FQCKECGMNFSWSCSLFKHLRSH 35
>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 30.6 bits (70), Expect = 0.058
Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Query: 114 THLKTHEGII-YPCPECDKTFLSTSGLREHRKVHAGVR-YICHA 155
+ + G Y C EC K F TS L H++VH G + +
Sbjct: 2 SSGSSGTGGKPYQCNECGKAFSQTSKLARHQRVHTGEKPSGPSS 45
Score = 28.7 bits (65), Expect = 0.29
Identities = 9/23 (39%), Positives = 16/23 (69%)
Query: 180 CDQCDRTFSCMPYLRQHQKLHSG 202
C++C + FS L +HQ++H+G
Sbjct: 15 CNECGKAFSQTSKLARHQRVHTG 37
Score = 25.6 bits (57), Expect = 3.2
Identities = 12/39 (30%), Positives = 16/39 (41%), Gaps = 6/39 (15%)
Query: 196 HQKLHSGIT-YSCPSCSKSFNRKDRYRMHLKLHQGVRHT 233
+G Y C C K+F++ L HQ V HT
Sbjct: 3 SGSSGTGGKPYQCNECGKAFSQT----SKLARHQRV-HT 36
Score = 25.2 bits (56), Expect = 4.9
Identities = 10/33 (30%), Positives = 13/33 (39%), Gaps = 1/33 (3%)
Query: 223 HLKLHQGVR-HTCKECSKEFSNEYNLKNHMVLH 254
G + + C EC K FS L H +H
Sbjct: 3 SGSSGTGGKPYQCNECGKAFSQTSKLARHQRVH 35
>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 42
Score = 30.2 bits (69), Expect = 0.062
Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 168 AHVASHNGVQ-HACDQCDRTFSCMPYLRQHQKLHSG 202
S G + + CDQC + FS L H ++H+G
Sbjct: 1 GSSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVHTG 36
Score = 29.5 bits (67), Expect = 0.11
Identities = 11/35 (31%), Positives = 14/35 (40%), Gaps = 1/35 (2%)
Query: 115 HLKTHEG-IIYPCPECDKTFLSTSGLREHRKVHAG 148
+ G Y C +C K F L H +VH G
Sbjct: 2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVHTG 36
Score = 27.5 bits (62), Expect = 0.54
Identities = 10/35 (28%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 196 HQKLHSGIT-YSCPSCSKSFNRKDRYRMHLKLHQG 229
G Y C C K+F++K +H+++H G
Sbjct: 2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVHTG 36
Score = 26.0 bits (58), Expect = 2.1
Identities = 9/33 (27%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 223 HLKLHQGVR-HTCKECSKEFSNEYNLKNHMVLH 254
G + + C +C K FS + +L H+ +H
Sbjct: 2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVH 34
>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 30.2 bits (69), Expect = 0.068
Identities = 12/42 (28%), Positives = 18/42 (42%), Gaps = 2/42 (4%)
Query: 114 THLKTHEG-IIYPCPECDKTFLSTSGLREHRKVHAGVR-YIC 153
+ + G Y C EC K F S L H+++H G +
Sbjct: 2 SSGSSGTGERHYECSECGKAFARKSTLIMHQRIHTGEKPSGP 43
Score = 29.8 bits (68), Expect = 0.098
Identities = 12/36 (33%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
Query: 195 QHQKLHSGIT-YSCPSCSKSFNRKDRYRMHLKLHQG 229
+G Y C C K+F RK MH ++H G
Sbjct: 2 SSGSSGTGERHYECSECGKAFARKSTLIMHQRIHTG 37
Score = 27.8 bits (63), Expect = 0.46
Identities = 8/23 (34%), Positives = 14/23 (60%)
Query: 180 CDQCDRTFSCMPYLRQHQKLHSG 202
C +C + F+ L HQ++H+G
Sbjct: 15 CSECGKAFARKSTLIMHQRIHTG 37
Score = 24.4 bits (54), Expect = 7.4
Identities = 10/33 (30%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Query: 223 HLKLHQGVR-HTCKECSKEFSNEYNLKNHMVLH 254
G R + C EC K F+ + L H +H
Sbjct: 3 SGSSGTGERHYECSECGKAFARKSTLIMHQRIH 35
>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 30.2 bits (69), Expect = 0.070
Identities = 11/42 (26%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
Query: 114 THLKTHEGII-YPCPECDKTFLSTSGLREHRKVHAGVR-YIC 153
+ + G Y C +C K+F+ S L H+++H G
Sbjct: 2 SSGSSGTGEKPYECSDCGKSFIKKSQLHVHQRIHTGENPSGP 43
Score = 29.4 bits (67), Expect = 0.15
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 180 CDQCDRTFSCMPYLRQHQKLHSG 202
C C ++F L HQ++H+G
Sbjct: 15 CSDCGKSFIKKSQLHVHQRIHTG 37
Score = 28.7 bits (65), Expect = 0.23
Identities = 11/36 (30%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 195 QHQKLHSGIT-YSCPSCSKSFNRKDRYRMHLKLHQG 229
+G Y C C KSF +K + +H ++H G
Sbjct: 2 SSGSSGTGEKPYECSDCGKSFIKKSQLHVHQRIHTG 37
>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 30.2 bits (69), Expect = 0.071
Identities = 13/36 (36%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 114 THLKTHEG-IIYPCPECDKTFLSTSGLREHRKVHAG 148
+ + G Y C EC K F S L H+K+H G
Sbjct: 2 SSGSSGTGEKPYRCAECGKAFTDRSNLFTHQKIHTG 37
Score = 28.6 bits (65), Expect = 0.24
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 180 CDQCDRTFSCMPYLRQHQKLHSG 202
C +C + F+ L HQK+H+G
Sbjct: 15 CAECGKAFTDRSNLFTHQKIHTG 37
Score = 26.7 bits (60), Expect = 1.1
Identities = 10/36 (27%), Positives = 14/36 (38%), Gaps = 1/36 (2%)
Query: 195 QHQKLHSG-ITYSCPSCSKSFNRKDRYRMHLKLHQG 229
+G Y C C K+F + H K+H G
Sbjct: 2 SSGSSGTGEKPYRCAECGKAFTDRSNLFTHQKIHTG 37
Score = 25.2 bits (56), Expect = 5.0
Identities = 10/33 (30%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Query: 223 HLKLHQGVR-HTCKECSKEFSNEYNLKNHMVLH 254
G + + C EC K F++ NL H +H
Sbjct: 3 SGSSGTGEKPYRCAECGKAFTDRSNLFTHQKIH 35
>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 30.2 bits (69), Expect = 0.072
Identities = 10/42 (23%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Query: 114 THLKTHEG-IIYPCPECDKTFLSTSGLREHRKVHAGVR-YIC 153
+ + G + C EC K+F+ ++ L +H+++H G +
Sbjct: 2 SSGSSGTGERPHKCNECGKSFIQSAHLIQHQRIHTGEKPSGP 43
Score = 28.6 bits (65), Expect = 0.28
Identities = 9/23 (39%), Positives = 17/23 (73%)
Query: 180 CDQCDRTFSCMPYLRQHQKLHSG 202
C++C ++F +L QHQ++H+G
Sbjct: 15 CNECGKSFIQSAHLIQHQRIHTG 37
Score = 27.5 bits (62), Expect = 0.76
Identities = 12/40 (30%), Positives = 16/40 (40%), Gaps = 6/40 (15%)
Query: 195 QHQKLHSGIT-YSCPSCSKSFNRKDRYRMHLKLHQGVRHT 233
+G + C C KSF + HL HQ + HT
Sbjct: 2 SSGSSGTGERPHKCNECGKSFIQS----AHLIQHQRI-HT 36
Score = 24.4 bits (54), Expect = 8.6
Identities = 11/33 (33%), Positives = 13/33 (39%), Gaps = 1/33 (3%)
Query: 223 HLKLHQGVR-HTCKECSKEFSNEYNLKNHMVLH 254
G R H C EC K F +L H +H
Sbjct: 3 SGSSGTGERPHKCNECGKSFIQSAHLIQHQRIH 35
>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 30.2 bits (69), Expect = 0.074
Identities = 11/36 (30%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
Query: 114 THLKTHEG-IIYPCPECDKTFLSTSGLREHRKVHAG 148
+ + G Y C EC K + L H++VH G
Sbjct: 2 SSGSSGSGEKPYKCVECGKGYKRRLDLDFHQRVHTG 37
Score = 28.7 bits (65), Expect = 0.29
Identities = 14/39 (35%), Positives = 16/39 (41%), Gaps = 6/39 (15%)
Query: 196 HQKLHSGIT-YSCPSCSKSFNRKDRYRMHLKLHQGVRHT 233
SG Y C C K + R R+ L HQ V HT
Sbjct: 3 SGSSGSGEKPYKCVECGKGYKR----RLDLDFHQRV-HT 36
Score = 27.9 bits (63), Expect = 0.45
Identities = 7/23 (30%), Positives = 13/23 (56%)
Query: 180 CDQCDRTFSCMPYLRQHQKLHSG 202
C +C + + L HQ++H+G
Sbjct: 15 CVECGKGYKRRLDLDFHQRVHTG 37
Score = 24.4 bits (54), Expect = 8.7
Identities = 8/33 (24%), Positives = 13/33 (39%), Gaps = 1/33 (3%)
Query: 223 HLKLHQGVR-HTCKECSKEFSNEYNLKNHMVLH 254
G + + C EC K + +L H +H
Sbjct: 3 SGSSGSGEKPYKCVECGKGYKRRLDLDFHQRVH 35
>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A
Length = 46
Score = 30.2 bits (69), Expect = 0.075
Identities = 11/23 (47%), Positives = 16/23 (69%)
Query: 180 CDQCDRTFSCMPYLRQHQKLHSG 202
C++C + FS L QHQK+H+G
Sbjct: 15 CNECGKVFSRNSQLSQHQKIHTG 37
Score = 29.8 bits (68), Expect = 0.095
Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 124 YPCPECDKTFLSTSGLREHRKVHAGVR-YICHA 155
Y C EC K F S L +H+K+H G + +
Sbjct: 13 YKCNECGKVFSRNSQLSQHQKIHTGEKPSGPSS 45
Score = 28.3 bits (64), Expect = 0.33
Identities = 11/36 (30%), Positives = 15/36 (41%), Gaps = 1/36 (2%)
Query: 195 QHQKLHSGIT-YSCPSCSKSFNRKDRYRMHLKLHQG 229
+G Y C C K F+R + H K+H G
Sbjct: 2 SSGSSGTGEKRYKCNECGKVFSRNSQLSQHQKIHTG 37
Score = 25.6 bits (57), Expect = 3.4
Identities = 10/33 (30%), Positives = 13/33 (39%), Gaps = 1/33 (3%)
Query: 223 HLKLHQGVR-HTCKECSKEFSNEYNLKNHMVLH 254
G + + C EC K FS L H +H
Sbjct: 3 SGSSGTGEKRYKCNECGKVFSRNSQLSQHQKIH 35
>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 30.2 bits (69), Expect = 0.075
Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 114 THLKTHEG-IIYPCPECDKTFLSTSGLREHRKVHAG 148
+ + G Y C EC K+F+ S L HR++H G
Sbjct: 2 SSGSSGTGEKPYICNECGKSFIQKSHLNRHRRIHTG 37
Score = 28.2 bits (64), Expect = 0.41
Identities = 7/23 (30%), Positives = 17/23 (73%)
Query: 180 CDQCDRTFSCMPYLRQHQKLHSG 202
C++C ++F +L +H+++H+G
Sbjct: 15 CNECGKSFIQKSHLNRHRRIHTG 37
Score = 27.1 bits (61), Expect = 0.89
Identities = 13/40 (32%), Positives = 17/40 (42%), Gaps = 6/40 (15%)
Query: 195 QHQKLHSGIT-YSCPSCSKSFNRKDRYRMHLKLHQGVRHT 233
+G Y C C KSF +K HL H+ + HT
Sbjct: 2 SSGSSGTGEKPYICNECGKSFIQK----SHLNRHRRI-HT 36
>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible
early growth response protein 1, TGFB-inducible early
growth response protein 1; NMR {Homo sapiens}
Length = 72
Score = 30.8 bits (70), Expect = 0.075
Identities = 17/68 (25%), Positives = 28/68 (41%), Gaps = 6/68 (8%)
Query: 193 LRQHQKLHSGI-TYSC--PSCSKSFNRKDRYRMHLKLHQGVR-HTC--KECSKEFSNEYN 246
Q S I ++ C P C K++ + + H + H G + +C K C + F+
Sbjct: 5 SSGPQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDE 64
Query: 247 LKNHMVLH 254
L H H
Sbjct: 65 LSRHRRTH 72
Score = 30.4 bits (69), Expect = 0.11
Identities = 17/68 (25%), Positives = 27/68 (39%), Gaps = 6/68 (8%)
Query: 112 LKTHLKTHEGI-IYPC--PECDKTFLSTSGLREHRKVHAGVR-YICH--ACPREFSSEAT 165
I + C P C KT+ +S L+ H + H G + + C C R F+
Sbjct: 5 SSGPQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDE 64
Query: 166 MKAHVASH 173
+ H +H
Sbjct: 65 LSRHRRTH 72
Score = 30.4 bits (69), Expect = 0.12
Identities = 18/64 (28%), Positives = 28/64 (43%), Gaps = 5/64 (7%)
Query: 88 SRMSTTLTRHPC--PQCSRDFATVKILKTHLKTHEGII-YPC--PECDKTFLSTSGLREH 142
S+ + H C P C + + LK H +TH G + C C++ F + L H
Sbjct: 9 QIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRH 68
Query: 143 RKVH 146
R+ H
Sbjct: 69 RRTH 72
Score = 29.7 bits (67), Expect = 0.19
Identities = 16/70 (22%), Positives = 28/70 (40%), Gaps = 6/70 (8%)
Query: 164 ATMKAHVASHNGV-QHACDQ--CDRTFSCMPYLRQHQKLHSGIT-YSC--PSCSKSFNRK 217
+ + + H C C +T+ +L+ H + H+G +SC C + F R
Sbjct: 3 SGSSGPQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARS 62
Query: 218 DRYRMHLKLH 227
D H + H
Sbjct: 63 DELSRHRRTH 72
Score = 28.5 bits (64), Expect = 0.61
Identities = 18/65 (27%), Positives = 26/65 (40%), Gaps = 6/65 (9%)
Query: 221 RMHLKLHQGVR-HTCK--ECSKEFSNEYNLKNHMVLH-DVRAYVC--ELCARQFTRVDHF 274
+R H C C K + +LK H H + + C + C R+F R D
Sbjct: 6 SGPQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDEL 65
Query: 275 NHHRR 279
+ HRR
Sbjct: 66 SRHRR 70
Score = 28.1 bits (63), Expect = 0.71
Identities = 18/71 (25%), Positives = 35/71 (49%), Gaps = 6/71 (8%)
Query: 136 TSGLREHRKVHAGVR-YICH--ACPREFSSEATMKAHVASHNGVQ-HACDQ--CDRTFSC 189
+SG + + +R +IC C + + + +KAH +H G + +C C+R F+
Sbjct: 2 SSGSSGPQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFAR 61
Query: 190 MPYLRQHQKLH 200
L +H++ H
Sbjct: 62 SDELSRHRRTH 72
Score = 27.0 bits (60), Expect = 2.1
Identities = 15/58 (25%), Positives = 25/58 (43%), Gaps = 5/58 (8%)
Query: 17 TTPTPTTQTSSTTPTRHPC--PQCSRDFATVKILKTHLKTHEGII-YPC--PECDKTF 69
++ + Q S+ H C P C + + LK H +TH G + C C++ F
Sbjct: 2 SSGSSGPQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRF 59
>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 30.2 bits (69), Expect = 0.078
Identities = 9/23 (39%), Positives = 16/23 (69%)
Query: 180 CDQCDRTFSCMPYLRQHQKLHSG 202
C++C + F YL +HQ++H+G
Sbjct: 15 CNECGKVFRHNSYLSRHQRIHTG 37
Score = 30.2 bits (69), Expect = 0.084
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 124 YPCPECDKTFLSTSGLREHRKVHAG 148
Y C EC K F S L H+++H G
Sbjct: 13 YKCNECGKVFRHNSYLSRHQRIHTG 37
Score = 27.9 bits (63), Expect = 0.52
Identities = 9/36 (25%), Positives = 12/36 (33%), Gaps = 1/36 (2%)
Query: 195 QHQKLHSGIT-YSCPSCSKSFNRKDRYRMHLKLHQG 229
+G Y C C K F H ++H G
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFRHNSYLSRHQRIHTG 37
Score = 24.4 bits (54), Expect = 7.7
Identities = 9/33 (27%), Positives = 13/33 (39%), Gaps = 1/33 (3%)
Query: 223 HLKLHQGVR-HTCKECSKEFSNEYNLKNHMVLH 254
G + + C EC K F + L H +H
Sbjct: 3 SGSSGTGEKPYKCNECGKVFRHNSYLSRHQRIH 35
>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 30.2 bits (69), Expect = 0.080
Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 114 THLKTHEGII-YPCPECDKTFLSTSGLREHRKVHAG 148
+ + G Y C EC K F+ S L+EH+++H G
Sbjct: 2 SSGSSGTGEKPYNCEECGKAFIHDSQLQEHQRIHTG 37
Score = 28.6 bits (65), Expect = 0.22
Identities = 8/23 (34%), Positives = 16/23 (69%)
Query: 180 CDQCDRTFSCMPYLRQHQKLHSG 202
C++C + F L++HQ++H+G
Sbjct: 15 CEECGKAFIHDSQLQEHQRIHTG 37
Score = 27.1 bits (61), Expect = 1.0
Identities = 9/35 (25%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 196 HQKLHSGIT-YSCPSCSKSFNRKDRYRMHLKLHQG 229
+G Y+C C K+F + + H ++H G
Sbjct: 3 SGSSGTGEKPYNCEECGKAFIHDSQLQEHQRIHTG 37
Score = 25.2 bits (56), Expect = 4.8
Identities = 9/33 (27%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 223 HLKLHQGVR-HTCKECSKEFSNEYNLKNHMVLH 254
G + + C+EC K F ++ L+ H +H
Sbjct: 3 SGSSGTGEKPYNCEECGKAFIHDSQLQEHQRIH 35
>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 30.2 bits (69), Expect = 0.080
Identities = 13/42 (30%), Positives = 18/42 (42%), Gaps = 2/42 (4%)
Query: 114 THLKTHEG-IIYPCPECDKTFLSTSGLREHRKVHAGVR-YIC 153
+ + G Y C EC KTF S L H++ H G +
Sbjct: 2 SSGSSGSGEKPYGCNECGKTFSQKSILSAHQRTHTGEKPSGP 43
Score = 29.4 bits (67), Expect = 0.16
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 180 CDQCDRTFSCMPYLRQHQKLHSG 202
C++C +TFS L HQ+ H+G
Sbjct: 15 CNECGKTFSQKSILSAHQRTHTG 37
Score = 26.3 bits (59), Expect = 1.5
Identities = 11/35 (31%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 196 HQKLHSGIT-YSCPSCSKSFNRKDRYRMHLKLHQG 229
SG Y C C K+F++K H + H G
Sbjct: 3 SGSSGSGEKPYGCNECGKTFSQKSILSAHQRTHTG 37
>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 30.2 bits (69), Expect = 0.082
Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 114 THLKTHEG-IIYPCPECDKTFLSTSGLREHRKVHAG 148
+ + G Y C EC KTF+ L +H++VH G
Sbjct: 2 SSGSSGSGKKPYECKECRKTFIQIGHLNQHKRVHTG 37
Score = 29.4 bits (67), Expect = 0.13
Identities = 9/23 (39%), Positives = 17/23 (73%)
Query: 180 CDQCDRTFSCMPYLRQHQKLHSG 202
C +C +TF + +L QH+++H+G
Sbjct: 15 CKECRKTFIQIGHLNQHKRVHTG 37
Score = 26.3 bits (59), Expect = 1.9
Identities = 11/43 (25%), Positives = 15/43 (34%), Gaps = 2/43 (4%)
Query: 196 HQKLHSGIT-YSCPSCSKSFNRKDRYRMHLKLHQGVR-HTCKE 236
SG Y C C K+F + H ++H G R
Sbjct: 3 SGSSGSGKKPYECKECRKTFIQIGHLNQHKRVHTGERSSGPSS 45
>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 30.2 bits (69), Expect = 0.085
Identities = 10/44 (22%), Positives = 17/44 (38%), Gaps = 2/44 (4%)
Query: 114 THLKTHEG-IIYPCPECDKTFLSTSGLREHRKVHAGVR-YICHA 155
+ + G + C EC K F L H ++H G + +
Sbjct: 2 SSGSSGSGEKPFKCKECGKAFRQNIHLASHLRIHTGEKPSGPSS 45
Score = 28.2 bits (64), Expect = 0.36
Identities = 7/23 (30%), Positives = 13/23 (56%)
Query: 180 CDQCDRTFSCMPYLRQHQKLHSG 202
C +C + F +L H ++H+G
Sbjct: 15 CKECGKAFRQNIHLASHLRIHTG 37
Score = 27.8 bits (63), Expect = 0.48
Identities = 11/40 (27%), Positives = 16/40 (40%), Gaps = 6/40 (15%)
Query: 195 QHQKLHSGIT-YSCPSCSKSFNRKDRYRMHLKLHQGVRHT 233
SG + C C K+F + +HL H + HT
Sbjct: 2 SSGSSGSGEKPFKCKECGKAFRQ----NIHLASHLRI-HT 36
>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 29.8 bits (68), Expect = 0.085
Identities = 10/42 (23%), Positives = 15/42 (35%), Gaps = 2/42 (4%)
Query: 114 THLKTHEG-IIYPCPECDKTFLSTSGLREHRKVHAGVR-YIC 153
+ + G C EC K F S L H++ H +
Sbjct: 2 SSGSSGTGEKPCKCTECGKAFCWKSQLIMHQRTHVDDKHSGP 43
Score = 28.3 bits (64), Expect = 0.32
Identities = 9/36 (25%), Positives = 15/36 (41%), Gaps = 1/36 (2%)
Query: 168 AHVASHNGVQ-HACDQCDRTFSCMPYLRQHQKLHSG 202
+ +S G + C +C + F L HQ+ H
Sbjct: 2 SSGSSGTGEKPCKCTECGKAFCWKSQLIMHQRTHVD 37
Score = 26.4 bits (59), Expect = 1.9
Identities = 9/35 (25%), Positives = 13/35 (37%), Gaps = 1/35 (2%)
Query: 196 HQKLHSGIT-YSCPSCSKSFNRKDRYRMHLKLHQG 229
+G C C K+F K + MH + H
Sbjct: 3 SGSSGTGEKPCKCTECGKAFCWKSQLIMHQRTHVD 37
>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 29.8 bits (68), Expect = 0.087
Identities = 12/36 (33%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
Query: 114 THLKTHEG-IIYPCPECDKTFLSTSGLREHRKVHAG 148
+ + G Y C EC K F S L H ++H G
Sbjct: 2 SSGSSGSGEKPYKCNECGKVFTQNSHLTNHWRIHTG 37
Score = 28.2 bits (64), Expect = 0.32
Identities = 7/23 (30%), Positives = 15/23 (65%)
Query: 180 CDQCDRTFSCMPYLRQHQKLHSG 202
C++C + F+ +L H ++H+G
Sbjct: 15 CNECGKVFTQNSHLTNHWRIHTG 37
Score = 27.1 bits (61), Expect = 1.0
Identities = 12/39 (30%), Positives = 14/39 (35%), Gaps = 6/39 (15%)
Query: 196 HQKLHSGIT-YSCPSCSKSFNRKDRYRMHLKLHQGVRHT 233
SG Y C C K F + HL H + HT
Sbjct: 3 SGSSGSGEKPYKCNECGKVFTQN----SHLTNHWRI-HT 36
>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 29.8 bits (68), Expect = 0.088
Identities = 11/36 (30%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 114 THLKTHEG-IIYPCPECDKTFLSTSGLREHRKVHAG 148
+ + G Y C C K+F S L H+++H G
Sbjct: 2 SSGSSGTGEKPYKCDVCHKSFRYGSSLTVHQRIHTG 37
Score = 29.4 bits (67), Expect = 0.12
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 180 CDQCDRTFSCMPYLRQHQKLHSG 202
CD C ++F L HQ++H+G
Sbjct: 15 CDVCHKSFRYGSSLTVHQRIHTG 37
Score = 27.9 bits (63), Expect = 0.50
Identities = 14/40 (35%), Positives = 17/40 (42%), Gaps = 6/40 (15%)
Query: 195 QHQKLHSGIT-YSCPSCSKSFNRKDRYRMHLKLHQGVRHT 233
+G Y C C KSF RY L +HQ + HT
Sbjct: 2 SSGSSGTGEKPYKCDVCHKSF----RYGSSLTVHQRI-HT 36
Score = 25.2 bits (56), Expect = 4.9
Identities = 8/33 (24%), Positives = 12/33 (36%), Gaps = 1/33 (3%)
Query: 223 HLKLHQGVR-HTCKECSKEFSNEYNLKNHMVLH 254
G + + C C K F +L H +H
Sbjct: 3 SGSSGTGEKPYKCDVCHKSFRYGSSLTVHQRIH 35
>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 29.8 bits (68), Expect = 0.089
Identities = 7/23 (30%), Positives = 13/23 (56%)
Query: 180 CDQCDRTFSCMPYLRQHQKLHSG 202
C+ C + F +L QH ++H+
Sbjct: 15 CNVCGKAFVLSAHLNQHLRVHTQ 37
Score = 28.2 bits (64), Expect = 0.40
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 124 YPCPECDKTFLSTSGLREHRKVHAG 148
Y C C K F+ ++ L +H +VH
Sbjct: 13 YSCNVCGKAFVLSAHLNQHLRVHTQ 37
Score = 27.9 bits (63), Expect = 0.50
Identities = 13/40 (32%), Positives = 15/40 (37%), Gaps = 6/40 (15%)
Query: 195 QHQKLHSGIT-YSCPSCSKSFNRKDRYRMHLKLHQGVRHT 233
+G YSC C K+F HL H V HT
Sbjct: 2 SSGSSGTGEKPYSCNVCGKAFVL----SAHLNQHLRV-HT 36
Score = 24.8 bits (55), Expect = 6.5
Identities = 8/33 (24%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Query: 223 HLKLHQGVR-HTCKECSKEFSNEYNLKNHMVLH 254
G + ++C C K F +L H+ +H
Sbjct: 3 SGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRVH 35
>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 29.8 bits (68), Expect = 0.090
Identities = 14/42 (33%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
Query: 114 THLKTHEG-IIYPCPECDKTFLSTSGLREHRKVHAGVR-YIC 153
+ + G Y C EC K F + L EHR++H G R
Sbjct: 2 SSGSSGSGEKPYKCSECGKAFHRHTHLNEHRRIHTGYRPSGP 43
Score = 28.2 bits (64), Expect = 0.31
Identities = 13/40 (32%), Positives = 17/40 (42%), Gaps = 6/40 (15%)
Query: 195 QHQKLHSGIT-YSCPSCSKSFNRKDRYRMHLKLHQGVRHT 233
SG Y C C K+F+R HL H+ + HT
Sbjct: 2 SSGSSGSGEKPYKCSECGKAFHR----HTHLNEHRRI-HT 36
Score = 27.1 bits (61), Expect = 1.1
Identities = 7/23 (30%), Positives = 15/23 (65%)
Query: 180 CDQCDRTFSCMPYLRQHQKLHSG 202
C +C + F +L +H+++H+G
Sbjct: 15 CSECGKAFHRHTHLNEHRRIHTG 37
>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 29.8 bits (68), Expect = 0.094
Identities = 10/36 (27%), Positives = 14/36 (38%), Gaps = 1/36 (2%)
Query: 114 THLKTHEG-IIYPCPECDKTFLSTSGLREHRKVHAG 148
+ + G + C C K+F S L H VH
Sbjct: 2 SSGSSGTGEKPFKCDICGKSFCGRSRLNRHSMVHTA 37
Score = 28.2 bits (64), Expect = 0.36
Identities = 7/23 (30%), Positives = 12/23 (52%)
Query: 180 CDQCDRTFSCMPYLRQHQKLHSG 202
CD C ++F L +H +H+
Sbjct: 15 CDICGKSFCGRSRLNRHSMVHTA 37
Score = 27.1 bits (61), Expect = 0.81
Identities = 9/35 (25%), Positives = 13/35 (37%), Gaps = 1/35 (2%)
Query: 196 HQKLHSGIT-YSCPSCSKSFNRKDRYRMHLKLHQG 229
+G + C C KSF + R H +H
Sbjct: 3 SGSSGTGEKPFKCDICGKSFCGRSRLNRHSMVHTA 37
>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 29.8 bits (68), Expect = 0.095
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 180 CDQCDRTFSCMPYLRQHQKLHSG 202
C C + F+ +L QHQK H+G
Sbjct: 15 CKVCSKAFTQKAHLAQHQKTHTG 37
Score = 29.4 bits (67), Expect = 0.15
Identities = 11/42 (26%), Positives = 17/42 (40%), Gaps = 2/42 (4%)
Query: 114 THLKTHEGII-YPCPECDKTFLSTSGLREHRKVHAGVR-YIC 153
+ + G Y C C K F + L +H+K H G +
Sbjct: 2 SSGSSGTGEKPYECKVCSKAFTQKAHLAQHQKTHTGEKPSGP 43
Score = 27.9 bits (63), Expect = 0.49
Identities = 12/44 (27%), Positives = 16/44 (36%), Gaps = 2/44 (4%)
Query: 195 QHQKLHSGIT-YSCPSCSKSFNRKDRYRMHLKLHQGVR-HTCKE 236
+G Y C CSK+F +K H K H G +
Sbjct: 2 SSGSSGTGEKPYECKVCSKAFTQKAHLAQHQKTHTGEKPSGPSS 45
>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 29.8 bits (68), Expect = 0.096
Identities = 11/42 (26%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
Query: 114 THLKTHEG-IIYPCPECDKTFLSTSGLREHRKVHAGVR-YIC 153
+ + G Y C EC K F + L +H+++H G +
Sbjct: 2 SSGSSGTGEKPYRCGECGKAFAQKANLTQHQRIHTGEKPSGP 43
Score = 28.2 bits (64), Expect = 0.37
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 180 CDQCDRTFSCMPYLRQHQKLHSG 202
C +C + F+ L QHQ++H+G
Sbjct: 15 CGECGKAFAQKANLTQHQRIHTG 37
Score = 28.2 bits (64), Expect = 0.39
Identities = 12/40 (30%), Positives = 17/40 (42%), Gaps = 6/40 (15%)
Query: 195 QHQKLHSGIT-YSCPSCSKSFNRKDRYRMHLKLHQGVRHT 233
+G Y C C K+F +K +L HQ + HT
Sbjct: 2 SSGSSGTGEKPYRCGECGKAFAQK----ANLTQHQRI-HT 36
Score = 24.8 bits (55), Expect = 6.4
Identities = 10/33 (30%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Query: 223 HLKLHQGVR-HTCKECSKEFSNEYNLKNHMVLH 254
G + + C EC K F+ + NL H +H
Sbjct: 3 SGSSGTGEKPYRCGECGKAFAQKANLTQHQRIH 35
>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 29.8 bits (68), Expect = 0.098
Identities = 13/42 (30%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
Query: 114 THLKTHEG-IIYPCPECDKTFLSTSGLREHRKVHAGVR-YIC 153
+ + G Y C EC K F TS L H+++H G +
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFSQTSKLARHQRIHTGEKPSGP 43
Score = 28.6 bits (65), Expect = 0.22
Identities = 9/23 (39%), Positives = 16/23 (69%)
Query: 180 CDQCDRTFSCMPYLRQHQKLHSG 202
C++C + FS L +HQ++H+G
Sbjct: 15 CNECGKAFSQTSKLARHQRIHTG 37
Score = 25.9 bits (58), Expect = 2.7
Identities = 11/39 (28%), Positives = 16/39 (41%), Gaps = 6/39 (15%)
Query: 196 HQKLHSGIT-YSCPSCSKSFNRKDRYRMHLKLHQGVRHT 233
+G Y C C K+F++ L HQ + HT
Sbjct: 3 SGSSGTGEKPYKCNECGKAFSQT----SKLARHQRI-HT 36
Score = 24.8 bits (55), Expect = 6.6
Identities = 10/33 (30%), Positives = 13/33 (39%), Gaps = 1/33 (3%)
Query: 223 HLKLHQGVR-HTCKECSKEFSNEYNLKNHMVLH 254
G + + C EC K FS L H +H
Sbjct: 3 SGSSGTGEKPYKCNECGKAFSQTSKLARHQRIH 35
>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 29.8 bits (68), Expect = 0.100
Identities = 11/25 (44%), Positives = 13/25 (52%)
Query: 124 YPCPECDKTFLSTSGLREHRKVHAG 148
Y C EC K F L H+K H+G
Sbjct: 13 YECCECGKVFSRKDQLVSHQKTHSG 37
Score = 27.1 bits (61), Expect = 0.98
Identities = 11/23 (47%), Positives = 13/23 (56%)
Query: 180 CDQCDRTFSCMPYLRQHQKLHSG 202
C +C + FS L HQK HSG
Sbjct: 15 CCECGKVFSRKDQLVSHQKTHSG 37
Score = 26.3 bits (59), Expect = 1.7
Identities = 13/36 (36%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
Query: 195 QHQKLHSGIT-YSCPSCSKSFNRKDRYRMHLKLHQG 229
+G Y C C K F+RKD+ H K H G
Sbjct: 2 SSGSSGTGENPYECCECGKVFSRKDQLVSHQKTHSG 37
>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 29.8 bits (68), Expect = 0.10
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 124 YPCPECDKTFLSTSGLREHRKVHAG 148
+ C EC K F S L H ++H+
Sbjct: 13 FKCNECGKGFGRRSHLAGHLRLHSR 37
Score = 28.7 bits (65), Expect = 0.28
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 180 CDQCDRTFSCMPYLRQHQKLHSG 202
C++C + F +L H +LHS
Sbjct: 15 CNECGKGFGRRSHLAGHLRLHSR 37
Score = 26.7 bits (60), Expect = 1.2
Identities = 11/35 (31%), Positives = 14/35 (40%), Gaps = 1/35 (2%)
Query: 196 HQKLHSGIT-YSCPSCSKSFNRKDRYRMHLKLHQG 229
SG + C C K F R+ HL+LH
Sbjct: 3 SGSSGSGERPFKCNECGKGFGRRSHLAGHLRLHSR 37
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger,
transcription factor, DNA binding protein; NMR {Mus
musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Length = 37
Score = 29.6 bits (67), Expect = 0.10
Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 196 HQKLHSGIT-YSCPSCSKSFNRKDRYRMHLKLH 227
+ +GI + CP C +SF+R D +H K H
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRH 34
Score = 28.5 bits (64), Expect = 0.28
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 256 VRAYVCELCARQFTRVDHFNHHRR 279
++ + C C R F+R DH HR+
Sbjct: 9 IKPFQCPDCDRSFSRSDHLALHRK 32
Score = 27.7 bits (62), Expect = 0.49
Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 115 HLKTHEGII-YPCPECDKTFLSTSGLREHRKVH 146
+ GI + CP+CD++F + L HRK H
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRH 34
Score = 25.4 bits (56), Expect = 3.2
Identities = 12/32 (37%), Positives = 15/32 (46%)
Query: 88 SRMSTTLTRHPCPQCSRDFATVKILKTHLKTH 119
+R ST + CP C R F+ L H K H
Sbjct: 3 TRGSTGIKPFQCPDCDRSFSRSDHLALHRKRH 34
Score = 24.2 bits (53), Expect = 7.7
Identities = 9/24 (37%), Positives = 10/24 (41%)
Query: 32 RHPCPQCSRDFATVKILKTHLKTH 55
CP C R F+ L H K H
Sbjct: 11 PFQCPDCDRSFSRSDHLALHRKRH 34
>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2eoi_A
Length = 46
Score = 29.8 bits (68), Expect = 0.10
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 180 CDQCDRTFSCMPYLRQHQKLHSG 202
C +C ++FS L HQ++H+G
Sbjct: 15 CAECGKSFSISSQLATHQRIHTG 37
Score = 29.0 bits (66), Expect = 0.16
Identities = 11/44 (25%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Query: 114 THLKTHEG-IIYPCPECDKTFLSTSGLREHRKVHAGVR-YICHA 155
+ + G + C EC K+F +S L H+++H G + +
Sbjct: 2 SSGSSGTGEKPFECAECGKSFSISSQLATHQRIHTGEKPSGPSS 45
Score = 25.9 bits (58), Expect = 2.2
Identities = 9/35 (25%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 196 HQKLHSGIT-YSCPSCSKSFNRKDRYRMHLKLHQG 229
+G + C C KSF+ + H ++H G
Sbjct: 3 SGSSGTGEKPFECAECGKSFSISSQLATHQRIHTG 37
Score = 24.8 bits (55), Expect = 5.6
Identities = 10/33 (30%), Positives = 12/33 (36%), Gaps = 1/33 (3%)
Query: 223 HLKLHQGVR-HTCKECSKEFSNEYNLKNHMVLH 254
G + C EC K FS L H +H
Sbjct: 3 SGSSGTGEKPFECAECGKSFSISSQLATHQRIH 35
>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 29.8 bits (68), Expect = 0.10
Identities = 12/23 (52%), Positives = 15/23 (65%)
Query: 180 CDQCDRTFSCMPYLRQHQKLHSG 202
CD C + FS L QHQ++HSG
Sbjct: 15 CDVCRKAFSHHASLTQHQRVHSG 37
Score = 29.4 bits (67), Expect = 0.15
Identities = 11/36 (30%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 114 THLKTHEG-IIYPCPECDKTFLSTSGLREHRKVHAG 148
+ + G Y C C K F + L +H++VH+G
Sbjct: 2 SSGSSGTGEKPYECDVCRKAFSHHASLTQHQRVHSG 37
Score = 25.9 bits (58), Expect = 2.5
Identities = 9/36 (25%), Positives = 14/36 (38%), Gaps = 1/36 (2%)
Query: 195 QHQKLHSGIT-YSCPSCSKSFNRKDRYRMHLKLHQG 229
+G Y C C K+F+ H ++H G
Sbjct: 2 SSGSSGTGEKPYECDVCRKAFSHHASLTQHQRVHSG 37
Score = 24.4 bits (54), Expect = 8.5
Identities = 9/33 (27%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Query: 223 HLKLHQGVR-HTCKECSKEFSNEYNLKNHMVLH 254
G + + C C K FS+ +L H +H
Sbjct: 3 SGSSGTGEKPYECDVCRKAFSHHASLTQHQRVH 35
>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 29.8 bits (68), Expect = 0.10
Identities = 11/36 (30%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 114 THLKTHEGII-YPCPECDKTFLSTSGLREHRKVHAG 148
+ + G + C EC K F + S L H++ H G
Sbjct: 2 SSGSSGTGEKPFECSECQKAFNTKSNLIVHQRTHTG 37
Score = 28.2 bits (64), Expect = 0.41
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 180 CDQCDRTFSCMPYLRQHQKLHSG 202
C +C + F+ L HQ+ H+G
Sbjct: 15 CSECQKAFNTKSNLIVHQRTHTG 37
Score = 27.1 bits (61), Expect = 1.0
Identities = 10/35 (28%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 196 HQKLHSG-ITYSCPSCSKSFNRKDRYRMHLKLHQG 229
+G + C C K+FN K +H + H G
Sbjct: 3 SGSSGTGEKPFECSECQKAFNTKSNLIVHQRTHTG 37
>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 29.8 bits (68), Expect = 0.10
Identities = 12/36 (33%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 114 THLKTHEG-IIYPCPECDKTFLSTSGLREHRKVHAG 148
+ + G Y C EC K F + S L H+ +H G
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFRAHSNLTTHQVIHTG 37
Score = 28.2 bits (64), Expect = 0.30
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 180 CDQCDRTFSCMPYLRQHQKLHSG 202
C++C + F L HQ +H+G
Sbjct: 15 CNECGKAFRAHSNLTTHQVIHTG 37
Score = 27.9 bits (63), Expect = 0.48
Identities = 9/36 (25%), Positives = 12/36 (33%), Gaps = 1/36 (2%)
Query: 195 QHQKLHSGIT-YSCPSCSKSFNRKDRYRMHLKLHQG 229
+G Y C C K+F H +H G
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFRAHSNLTTHQVIHTG 37
Score = 24.8 bits (55), Expect = 6.4
Identities = 11/33 (33%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Query: 223 HLKLHQGVR-HTCKECSKEFSNEYNLKNHMVLH 254
G + + C EC K F NL H V+H
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRAHSNLTTHQVIH 35
>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 29.8 bits (68), Expect = 0.11
Identities = 12/44 (27%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Query: 114 THLKTHEG-IIYPCPECDKTFLSTSGLREHRKVHAGVR-YICHA 155
+ + G Y C C K F +S L+ H++VH G + +
Sbjct: 2 SSGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRVHTGEKPSGPSS 45
Score = 29.4 bits (67), Expect = 0.16
Identities = 10/23 (43%), Positives = 16/23 (69%)
Query: 180 CDQCDRTFSCMPYLRQHQKLHSG 202
CD C + FS +L+ HQ++H+G
Sbjct: 15 CDVCGKEFSQSSHLQTHQRVHTG 37
Score = 27.5 bits (62), Expect = 0.70
Identities = 13/39 (33%), Positives = 16/39 (41%), Gaps = 6/39 (15%)
Query: 196 HQKLHSGIT-YSCPSCSKSFNRKDRYRMHLKLHQGVRHT 233
G Y C C K F++ HL+ HQ V HT
Sbjct: 3 SGSSGMGEKCYKCDVCGKEFSQS----SHLQTHQRV-HT 36
>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 29.8 bits (68), Expect = 0.11
Identities = 10/23 (43%), Positives = 13/23 (56%)
Query: 180 CDQCDRTFSCMPYLRQHQKLHSG 202
C C + FS L HQ++HSG
Sbjct: 15 CSVCGKAFSHRQSLSVHQRIHSG 37
Score = 28.6 bits (65), Expect = 0.25
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 124 YPCPECDKTFLSTSGLREHRKVHAG 148
Y C C K F L H+++H+G
Sbjct: 13 YECSVCGKAFSHRQSLSVHQRIHSG 37
Score = 26.3 bits (59), Expect = 1.8
Identities = 9/36 (25%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
Query: 195 QHQKLHSGIT-YSCPSCSKSFNRKDRYRMHLKLHQG 229
+G Y C C K+F+ + +H ++H G
Sbjct: 2 SSGSSGTGEKPYECSVCGKAFSHRQSLSVHQRIHSG 37
>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 29.8 bits (68), Expect = 0.11
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 178 HACDQCDRTFSCMPYLRQHQKLHSG 202
H C +C ++FS L HQ++H+G
Sbjct: 13 HECRECGKSFSFNSQLIVHQRIHTG 37
Score = 29.4 bits (67), Expect = 0.14
Identities = 11/36 (30%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 114 THLKTHEGII-YPCPECDKTFLSTSGLREHRKVHAG 148
+ + G + C EC K+F S L H+++H G
Sbjct: 2 SSGSSGTGEKPHECRECGKSFSFNSQLIVHQRIHTG 37
Score = 26.0 bits (58), Expect = 2.4
Identities = 9/35 (25%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 196 HQKLHSGIT-YSCPSCSKSFNRKDRYRMHLKLHQG 229
+G + C C KSF+ + +H ++H G
Sbjct: 3 SGSSGTGEKPHECRECGKSFSFNSQLIVHQRIHTG 37
Score = 25.2 bits (56), Expect = 4.7
Identities = 11/33 (33%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Query: 223 HLKLHQGVR-HTCKECSKEFSNEYNLKNHMVLH 254
G + H C+EC K FS L H +H
Sbjct: 3 SGSSGTGEKPHECRECGKSFSFNSQLIVHQRIH 35
>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 29.8 bits (68), Expect = 0.11
Identities = 9/23 (39%), Positives = 12/23 (52%)
Query: 180 CDQCDRTFSCMPYLRQHQKLHSG 202
C++C + F L HQ HSG
Sbjct: 15 CNECGKAFRARSSLAIHQATHSG 37
Score = 29.4 bits (67), Expect = 0.14
Identities = 12/36 (33%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 114 THLKTHEG-IIYPCPECDKTFLSTSGLREHRKVHAG 148
+ + G Y C EC K F + S L H+ H+G
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFRARSSLAIHQATHSG 37
Score = 26.3 bits (59), Expect = 1.4
Identities = 9/36 (25%), Positives = 13/36 (36%), Gaps = 1/36 (2%)
Query: 195 QHQKLHSG-ITYSCPSCSKSFNRKDRYRMHLKLHQG 229
+G Y C C K+F + +H H G
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFRARSSLAIHQATHSG 37
>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 29.8 bits (68), Expect = 0.11
Identities = 12/36 (33%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 114 THLKTHEG-IIYPCPECDKTFLSTSGLREHRKVHAG 148
+ + G + C EC K F S L H+K+H G
Sbjct: 2 SSGSSGTGGKHFECTECGKAFTRKSTLSMHQKIHTG 37
Score = 28.6 bits (65), Expect = 0.22
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 180 CDQCDRTFSCMPYLRQHQKLHSG 202
C +C + F+ L HQK+H+G
Sbjct: 15 CTECGKAFTRKSTLSMHQKIHTG 37
Score = 28.6 bits (65), Expect = 0.24
Identities = 12/36 (33%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
Query: 195 QHQKLHSGIT-YSCPSCSKSFNRKDRYRMHLKLHQG 229
+G + C C K+F RK MH K+H G
Sbjct: 2 SSGSSGTGGKHFECTECGKAFTRKSTLSMHQKIHTG 37
>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 44
Score = 29.4 bits (67), Expect = 0.12
Identities = 13/36 (36%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 114 THLKTHEGII-YPCPECDKTFLSTSGLREHRKVHAG 148
+ + G Y C EC K F+ S L H + HAG
Sbjct: 2 SSGSSGSGEKPYECNECGKAFIWKSLLIVHERTHAG 37
Score = 29.0 bits (66), Expect = 0.16
Identities = 7/23 (30%), Positives = 13/23 (56%)
Query: 180 CDQCDRTFSCMPYLRQHQKLHSG 202
C++C + F L H++ H+G
Sbjct: 15 CNECGKAFIWKSLLIVHERTHAG 37
Score = 26.7 bits (60), Expect = 1.1
Identities = 12/41 (29%), Positives = 16/41 (39%), Gaps = 2/41 (4%)
Query: 196 HQKLHSGIT-YSCPSCSKSFNRKDRYRMHLKLHQGVR-HTC 234
SG Y C C K+F K +H + H GV +
Sbjct: 3 SGSSGSGEKPYECNECGKAFIWKSLLIVHERTHAGVSGPSS 43
>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 29.4 bits (67), Expect = 0.12
Identities = 14/36 (38%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 114 THLKTHEG-IIYPCPECDKTFLSTSGLREHRKVHAG 148
+ + G Y C EC K F S L HR+VH G
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLARHRRVHTG 37
Score = 28.6 bits (65), Expect = 0.23
Identities = 7/23 (30%), Positives = 17/23 (73%)
Query: 180 CDQCDRTFSCMPYLRQHQKLHSG 202
C++C + F+ +L +H+++H+G
Sbjct: 15 CNECGKVFTQNSHLARHRRVHTG 37
Score = 25.9 bits (58), Expect = 2.3
Identities = 12/39 (30%), Positives = 15/39 (38%), Gaps = 6/39 (15%)
Query: 196 HQKLHSGIT-YSCPSCSKSFNRKDRYRMHLKLHQGVRHT 233
+G Y C C K F + HL H+ V HT
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQ----NSHLARHRRV-HT 36
>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 29.4 bits (67), Expect = 0.12
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 180 CDQCDRTFSCMPYLRQHQKLHSG 202
C+QC + FS L HQ +H+G
Sbjct: 15 CNQCGKAFSVRSSLTTHQAIHTG 37
Score = 29.0 bits (66), Expect = 0.21
Identities = 11/42 (26%), Positives = 17/42 (40%), Gaps = 2/42 (4%)
Query: 114 THLKTHEG-IIYPCPECDKTFLSTSGLREHRKVHAGVR-YIC 153
+ + G Y C +C K F S L H+ +H G +
Sbjct: 2 SSGSSGTGEKPYECNQCGKAFSVRSSLTTHQAIHTGKKPSGP 43
Score = 26.7 bits (60), Expect = 1.2
Identities = 9/36 (25%), Positives = 14/36 (38%), Gaps = 1/36 (2%)
Query: 195 QHQKLHSGIT-YSCPSCSKSFNRKDRYRMHLKLHQG 229
+G Y C C K+F+ + H +H G
Sbjct: 2 SSGSSGTGEKPYECNQCGKAFSVRSSLTTHQAIHTG 37
Score = 24.4 bits (54), Expect = 9.4
Identities = 9/33 (27%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Query: 223 HLKLHQGVR-HTCKECSKEFSNEYNLKNHMVLH 254
G + + C +C K FS +L H +H
Sbjct: 3 SGSSGTGEKPYECNQCGKAFSVRSSLTTHQAIH 35
>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A
Length = 42
Score = 29.4 bits (67), Expect = 0.12
Identities = 11/31 (35%), Positives = 13/31 (41%), Gaps = 1/31 (3%)
Query: 124 YPCPECDKTFLSTSGLREHRKVHAGVR-YIC 153
Y C EC K F L H++ HAG
Sbjct: 11 YECSECGKAFNRKDQLISHQRTHAGESGPSS 41
Score = 27.5 bits (62), Expect = 0.59
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 180 CDQCDRTFSCMPYLRQHQKLHSG 202
C +C + F+ L HQ+ H+G
Sbjct: 13 CSECGKAFNRKDQLISHQRTHAG 35
Score = 25.9 bits (58), Expect = 2.0
Identities = 14/34 (41%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 197 QKLHSGIT-YSCPSCSKSFNRKDRYRMHLKLHQG 229
SG Y C C K+FNRKD+ H + H G
Sbjct: 2 SSGSSGENPYECSECGKAFNRKDQLISHQRTHAG 35
>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 29.4 bits (67), Expect = 0.13
Identities = 8/23 (34%), Positives = 14/23 (60%)
Query: 180 CDQCDRTFSCMPYLRQHQKLHSG 202
C C ++F+ L HQ++H+G
Sbjct: 15 CSICGKSFTKKSQLHVHQQIHTG 37
Score = 29.0 bits (66), Expect = 0.20
Identities = 11/36 (30%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 114 THLKTHEG-IIYPCPECDKTFLSTSGLREHRKVHAG 148
+ + G Y C C K+F S L H+++H G
Sbjct: 2 SSGSSGTGEKPYECSICGKSFTKKSQLHVHQQIHTG 37
Score = 27.9 bits (63), Expect = 0.41
Identities = 11/36 (30%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 195 QHQKLHSGIT-YSCPSCSKSFNRKDRYRMHLKLHQG 229
+G Y C C KSF +K + +H ++H G
Sbjct: 2 SSGSSGTGEKPYECSICGKSFTKKSQLHVHQQIHTG 37
>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 41
Score = 29.5 bits (67), Expect = 0.13
Identities = 10/25 (40%), Positives = 13/25 (52%)
Query: 124 YPCPECDKTFLSTSGLREHRKVHAG 148
Y C EC K+F L H ++H G
Sbjct: 11 YECQECGKSFRQKGSLTLHERIHTG 35
Score = 27.9 bits (63), Expect = 0.38
Identities = 7/23 (30%), Positives = 14/23 (60%)
Query: 180 CDQCDRTFSCMPYLRQHQKLHSG 202
C +C ++F L H+++H+G
Sbjct: 13 CQECGKSFRQKGSLTLHERIHTG 35
>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 29.4 bits (67), Expect = 0.13
Identities = 13/42 (30%), Positives = 17/42 (40%), Gaps = 2/42 (4%)
Query: 114 THLKTHEG-IIYPCPECDKTFLSTSGLREHRKVHAGVR-YIC 153
+ + G Y C EC K F S L HR +H G +
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLVRHRGIHTGEKPSGP 43
Score = 28.2 bits (64), Expect = 0.37
Identities = 7/23 (30%), Positives = 16/23 (69%)
Query: 180 CDQCDRTFSCMPYLRQHQKLHSG 202
C++C + F+ +L +H+ +H+G
Sbjct: 15 CNECGKVFTQNSHLVRHRGIHTG 37
Score = 25.9 bits (58), Expect = 2.4
Identities = 12/39 (30%), Positives = 16/39 (41%), Gaps = 6/39 (15%)
Query: 196 HQKLHSGIT-YSCPSCSKSFNRKDRYRMHLKLHQGVRHT 233
+G Y C C K F + HL H+G+ HT
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQ----NSHLVRHRGI-HT 36
>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 29.4 bits (67), Expect = 0.13
Identities = 12/36 (33%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 114 THLKTHEG-IIYPCPECDKTFLSTSGLREHRKVHAG 148
+ + G Y C EC K F S L +H+K+H
Sbjct: 2 SSGSSGTGEKPYICAECGKAFTIRSNLIKHQKIHTK 37
Score = 27.9 bits (63), Expect = 0.45
Identities = 8/23 (34%), Positives = 14/23 (60%)
Query: 180 CDQCDRTFSCMPYLRQHQKLHSG 202
C +C + F+ L +HQK+H+
Sbjct: 15 CAECGKAFTIRSNLIKHQKIHTK 37
Score = 26.3 bits (59), Expect = 1.6
Identities = 9/35 (25%), Positives = 13/35 (37%), Gaps = 1/35 (2%)
Query: 196 HQKLHSGIT-YSCPSCSKSFNRKDRYRMHLKLHQG 229
+G Y C C K+F + H K+H
Sbjct: 3 SGSSGTGEKPYICAECGKAFTIRSNLIKHQKIHTK 37
Score = 25.6 bits (57), Expect = 2.9
Identities = 10/33 (30%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Query: 223 HLKLHQGVR-HTCKECSKEFSNEYNLKNHMVLH 254
G + + C EC K F+ NL H +H
Sbjct: 3 SGSSGTGEKPYICAECGKAFTIRSNLIKHQKIH 35
>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 29.4 bits (67), Expect = 0.13
Identities = 12/36 (33%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 114 THLKTHEG-IIYPCPECDKTFLSTSGLREHRKVHAG 148
+ + G Y C C K F S L +H+K+H G
Sbjct: 2 SSGSSGTGERPYICTVCGKAFTDRSNLIKHQKIHTG 37
Score = 27.8 bits (63), Expect = 0.47
Identities = 10/36 (27%), Positives = 14/36 (38%), Gaps = 1/36 (2%)
Query: 195 QHQKLHSG-ITYSCPSCSKSFNRKDRYRMHLKLHQG 229
+G Y C C K+F + H K+H G
Sbjct: 2 SSGSSGTGERPYICTVCGKAFTDRSNLIKHQKIHTG 37
Score = 27.8 bits (63), Expect = 0.52
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 180 CDQCDRTFSCMPYLRQHQKLHSG 202
C C + F+ L +HQK+H+G
Sbjct: 15 CTVCGKAFTDRSNLIKHQKIHTG 37
Score = 24.8 bits (55), Expect = 5.6
Identities = 10/33 (30%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Query: 223 HLKLHQGVR-HTCKECSKEFSNEYNLKNHMVLH 254
G R + C C K F++ NL H +H
Sbjct: 3 SGSSGTGERPYICTVCGKAFTDRSNLIKHQKIH 35
>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 29.4 bits (67), Expect = 0.13
Identities = 12/36 (33%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 114 THLKTHEG-IIYPCPECDKTFLSTSGLREHRKVHAG 148
+ + G Y C EC K F + S L H++ H G
Sbjct: 2 SSGSSGTGEKPYECNECQKAFNTKSNLMVHQRTHTG 37
Score = 29.0 bits (66), Expect = 0.21
Identities = 8/23 (34%), Positives = 14/23 (60%)
Query: 180 CDQCDRTFSCMPYLRQHQKLHSG 202
C++C + F+ L HQ+ H+G
Sbjct: 15 CNECQKAFNTKSNLMVHQRTHTG 37
Score = 27.1 bits (61), Expect = 0.90
Identities = 11/35 (31%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 196 HQKLHSGIT-YSCPSCSKSFNRKDRYRMHLKLHQG 229
+G Y C C K+FN K +H + H G
Sbjct: 3 SGSSGTGEKPYECNECQKAFNTKSNLMVHQRTHTG 37
>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 29.4 bits (67), Expect = 0.13
Identities = 10/35 (28%), Positives = 14/35 (40%), Gaps = 1/35 (2%)
Query: 115 HLKTHEG-IIYPCPECDKTFLSTSGLREHRKVHAG 148
+ G Y C C F+ + LR H +H G
Sbjct: 2 SSGSSGGEKPYKCETCGARFVQVAHLRAHVLIHTG 36
Score = 28.6 bits (65), Expect = 0.26
Identities = 10/35 (28%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 169 HVASHNGVQ-HACDQCDRTFSCMPYLRQHQKLHSG 202
S G + + C+ C F + +LR H +H+G
Sbjct: 2 SSGSSGGEKPYKCETCGARFVQVAHLRAHVLIHTG 36
Score = 28.3 bits (64), Expect = 0.30
Identities = 7/34 (20%), Positives = 13/34 (38%), Gaps = 7/34 (20%)
Query: 227 HQGVRHT------CKECSKEFSNEYNLKNHMVLH 254
G C+ C F +L+ H+++H
Sbjct: 2 SSGS-SGGEKPYKCETCGARFVQVAHLRAHVLIH 34
Score = 25.9 bits (58), Expect = 2.1
Identities = 10/39 (25%), Positives = 14/39 (35%), Gaps = 6/39 (15%)
Query: 196 HQKLHSGIT-YSCPSCSKSFNRKDRYRMHLKLHQGVRHT 233
G Y C +C F + HL+ H + HT
Sbjct: 2 SSGSSGGEKPYKCETCGARFVQ----VAHLRAHVLI-HT 35
Score = 24.4 bits (54), Expect = 7.6
Identities = 8/21 (38%), Positives = 10/21 (47%)
Query: 259 YVCELCARQFTRVDHFNHHRR 279
Y CE C +F +V H H
Sbjct: 12 YKCETCGARFVQVAHLRAHVL 32
>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 45
Score = 29.5 bits (65), Expect = 0.14
Identities = 13/30 (43%), Positives = 15/30 (50%)
Query: 204 TYSCPSCSKSFNRKDRYRMHLKLHQGVRHT 233
YSCP C F RKDR H++ H G
Sbjct: 10 PYSCPVCGLRFKRKDRMSYHVRSHDGSVGK 39
>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 29.4 bits (67), Expect = 0.14
Identities = 13/36 (36%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 114 THLKTHEGII-YPCPECDKTFLSTSGLREHRKVHAG 148
+ + G+ Y C EC K F S S L H + H G
Sbjct: 2 SSGSSGTGMKPYVCNECGKAFRSKSYLIIHTRTHTG 37
Score = 29.0 bits (66), Expect = 0.18
Identities = 10/36 (27%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 168 AHVASHNGVQ-HACDQCDRTFSCMPYLRQHQKLHSG 202
+ +S G++ + C++C + F YL H + H+G
Sbjct: 2 SSGSSGTGMKPYVCNECGKAFRSKSYLIIHTRTHTG 37
Score = 26.3 bits (59), Expect = 1.7
Identities = 10/35 (28%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 196 HQKLHSGIT-YSCPSCSKSFNRKDRYRMHLKLHQG 229
+G+ Y C C K+F K +H + H G
Sbjct: 3 SGSSGTGMKPYVCNECGKAFRSKSYLIIHTRTHTG 37
>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 29.4 bits (67), Expect = 0.14
Identities = 12/36 (33%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
Query: 114 THLKTHEG-IIYPCPECDKTFLSTSGLREHRKVHAG 148
+ + G Y C EC K F S L H+ +H G
Sbjct: 2 SSGSSGTGVKPYMCNECGKAFSVYSSLTTHQVIHTG 37
Score = 28.6 bits (65), Expect = 0.22
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 180 CDQCDRTFSCMPYLRQHQKLHSG 202
C++C + FS L HQ +H+G
Sbjct: 15 CNECGKAFSVYSSLTTHQVIHTG 37
Score = 25.9 bits (58), Expect = 2.3
Identities = 12/33 (36%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 223 HLKLHQGVR-HTCKECSKEFSNEYNLKNHMVLH 254
GV+ + C EC K FS +L H V+H
Sbjct: 3 SGSSGTGVKPYMCNECGKAFSVYSSLTTHQVIH 35
Score = 25.9 bits (58), Expect = 2.6
Identities = 9/36 (25%), Positives = 14/36 (38%), Gaps = 1/36 (2%)
Query: 195 QHQKLHSGIT-YSCPSCSKSFNRKDRYRMHLKLHQG 229
+G+ Y C C K+F+ H +H G
Sbjct: 2 SSGSSGTGVKPYMCNECGKAFSVYSSLTTHQVIHTG 37
>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 45
Score = 29.0 bits (66), Expect = 0.16
Identities = 9/44 (20%), Positives = 18/44 (40%), Gaps = 2/44 (4%)
Query: 114 THLKTHEG-IIYPCPECDKTFLSTSGLREHRKVHAGVR-YICHA 155
+ + G + C C K+F + L H+++H G +
Sbjct: 2 SSGSSGTGQKPFECTHCGKSFRAKGNLVTHQRIHTGEKSGPSSG 45
Score = 27.9 bits (63), Expect = 0.41
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 180 CDQCDRTFSCMPYLRQHQKLHSG 202
C C ++F L HQ++H+G
Sbjct: 15 CTHCGKSFRAKGNLVTHQRIHTG 37
Score = 27.5 bits (62), Expect = 0.66
Identities = 10/35 (28%), Positives = 14/35 (40%), Gaps = 1/35 (2%)
Query: 196 HQKLHSGIT-YSCPSCSKSFNRKDRYRMHLKLHQG 229
+G + C C KSF K H ++H G
Sbjct: 3 SGSSGTGQKPFECTHCGKSFRAKGNLVTHQRIHTG 37
Score = 25.2 bits (56), Expect = 4.6
Identities = 9/33 (27%), Positives = 12/33 (36%), Gaps = 1/33 (3%)
Query: 223 HLKLHQGVR-HTCKECSKEFSNEYNLKNHMVLH 254
G + C C K F + NL H +H
Sbjct: 3 SGSSGTGQKPFECTHCGKSFRAKGNLVTHQRIH 35
>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 29.4 bits (67), Expect = 0.16
Identities = 13/44 (29%), Positives = 18/44 (40%), Gaps = 2/44 (4%)
Query: 114 THLKTHEG-IIYPCPECDKTFLSTSGLREHRKVHAGVR-YICHA 155
+ + G Y C EC K F S L HR +H G + +
Sbjct: 2 SSGSSGTGKKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPSS 45
Score = 27.9 bits (63), Expect = 0.55
Identities = 7/23 (30%), Positives = 16/23 (69%)
Query: 180 CDQCDRTFSCMPYLRQHQKLHSG 202
C++C + F+ +L +H+ +H+G
Sbjct: 15 CNECGKVFTQNSHLARHRGIHTG 37
Score = 26.3 bits (59), Expect = 1.9
Identities = 12/39 (30%), Positives = 16/39 (41%), Gaps = 6/39 (15%)
Query: 196 HQKLHSGIT-YSCPSCSKSFNRKDRYRMHLKLHQGVRHT 233
+G Y C C K F + HL H+G+ HT
Sbjct: 3 SGSSGTGKKPYKCNECGKVFTQ----NSHLARHRGI-HT 36
>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 98
Score = 30.7 bits (68), Expect = 0.16
Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 3/47 (6%)
Query: 99 CPQCSRDFA-TVKILKTHLKTHEGI--IYPCPECDKTFLSTSGLREH 142
CP C+ T+ LK H++ + + C C K F S +GL H
Sbjct: 27 CPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYH 73
Score = 29.5 bits (65), Expect = 0.38
Identities = 16/65 (24%), Positives = 29/65 (44%), Gaps = 4/65 (6%)
Query: 124 YPCPECDKTFLST-SGLREHRKVHAGVR--YICHACPREFSSEATMKAHV-ASHNGVQHA 179
CP C+ T GL++H +V ++ C C ++F S+A + H A H+
Sbjct: 25 AVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMAEHSAKPSD 84
Query: 180 CDQCD 184
+ +
Sbjct: 85 AEASE 89
>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 95
Score = 30.3 bits (68), Expect = 0.17
Identities = 14/61 (22%), Positives = 22/61 (36%), Gaps = 10/61 (16%)
Query: 204 TYSCPSCSKSFNRKDRYRMHL-KLHQGVRHT---------CKECSKEFSNEYNLKNHMVL 253
+ SC ++F+ H+ H G C K F +Y L NH+ +
Sbjct: 25 SRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRV 84
Query: 254 H 254
H
Sbjct: 85 H 85
Score = 29.9 bits (67), Expect = 0.24
Identities = 18/81 (22%), Positives = 26/81 (32%), Gaps = 21/81 (25%)
Query: 124 YPCPECDKTFLSTSGLREH-RKVHAGVR-YICHACPREFSSEATMKAHVASHNGVQHACD 181
P CD+TF + L H H G H C E C
Sbjct: 26 RPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWE-------------------ECP 66
Query: 182 QCDRTFSCMPYLRQHQKLHSG 202
+ ++F L H ++H+G
Sbjct: 67 REGKSFKAKYKLVNHIRVHTG 87
Score = 28.8 bits (64), Expect = 0.73
Identities = 20/69 (28%), Positives = 25/69 (36%), Gaps = 11/69 (15%)
Query: 177 QHACDQCDRTFSCMPYLRQH-QKLHSGIT---------YSCPSCSKSFNRKDRYRMHLKL 226
CDRTFS M L H H G CP KSF K + H+++
Sbjct: 25 SRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRV 84
Query: 227 HQGVR-HTC 234
H G +
Sbjct: 85 HTGEKSGPS 93
Score = 28.4 bits (63), Expect = 0.80
Identities = 19/62 (30%), Positives = 25/62 (40%), Gaps = 10/62 (16%)
Query: 97 HPCPQCSRDFATVKILKTHL-KTHEGIIYP---------CPECDKTFLSTSGLREHRKVH 146
P C R F+T+ L TH+ H G CP K+F + L H +VH
Sbjct: 26 RPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVH 85
Query: 147 AG 148
G
Sbjct: 86 TG 87
>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 29.0 bits (66), Expect = 0.18
Identities = 12/36 (33%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
Query: 114 THLKTHEGII-YPCPECDKTFLSTSGLREHRKVHAG 148
+ + G Y C EC K F L H++ HAG
Sbjct: 2 SSGSSGTGENPYECHECGKAFSRKYQLISHQRTHAG 37
Score = 28.6 bits (65), Expect = 0.30
Identities = 11/36 (30%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
Query: 195 QHQKLHSGIT-YSCPSCSKSFNRKDRYRMHLKLHQG 229
+G Y C C K+F+RK + H + H G
Sbjct: 2 SSGSSGTGENPYECHECGKAFSRKYQLISHQRTHAG 37
Score = 28.2 bits (64), Expect = 0.35
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 180 CDQCDRTFSCMPYLRQHQKLHSG 202
C +C + FS L HQ+ H+G
Sbjct: 15 CHECGKAFSRKYQLISHQRTHAG 37
Score = 24.4 bits (54), Expect = 7.2
Identities = 11/33 (33%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Query: 223 HLKLHQGVR-HTCKECSKEFSNEYNLKNHMVLH 254
G + C EC K FS +Y L +H H
Sbjct: 3 SGSSGTGENPYECHECGKAFSRKYQLISHQRTH 35
>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 29.0 bits (66), Expect = 0.18
Identities = 11/36 (30%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 114 THLKTHEG-IIYPCPECDKTFLSTSGLREHRKVHAG 148
+ + G + C +C K F GL +HR++H G
Sbjct: 2 SSGSSGTGEKPFDCIDCGKAFSDHIGLNQHRRIHTG 37
Score = 28.6 bits (65), Expect = 0.27
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 180 CDQCDRTFSCMPYLRQHQKLHSG 202
C C + FS L QH+++H+G
Sbjct: 15 CIDCGKAFSDHIGLNQHRRIHTG 37
Score = 27.5 bits (62), Expect = 0.72
Identities = 8/36 (22%), Positives = 14/36 (38%), Gaps = 1/36 (2%)
Query: 195 QHQKLHSGIT-YSCPSCSKSFNRKDRYRMHLKLHQG 229
+G + C C K+F+ H ++H G
Sbjct: 2 SSGSSGTGEKPFDCIDCGKAFSDHIGLNQHRRIHTG 37
Score = 25.2 bits (56), Expect = 4.9
Identities = 9/33 (27%), Positives = 13/33 (39%), Gaps = 1/33 (3%)
Query: 223 HLKLHQGVR-HTCKECSKEFSNEYNLKNHMVLH 254
G + C +C K FS+ L H +H
Sbjct: 3 SGSSGTGEKPFDCIDCGKAFSDHIGLNQHRRIH 35
>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2ysv_A
Length = 46
Score = 29.0 bits (66), Expect = 0.19
Identities = 10/23 (43%), Positives = 16/23 (69%)
Query: 180 CDQCDRTFSCMPYLRQHQKLHSG 202
C +C + FS +L QHQ++H+G
Sbjct: 15 CKECGKAFSQTTHLIQHQRVHTG 37
Score = 28.6 bits (65), Expect = 0.23
Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 114 THLKTHEG-IIYPCPECDKTFLSTSGLREHRKVHAG 148
+ + G Y C EC K F T+ L +H++VH G
Sbjct: 2 SSGSSGTGEKPYECKECGKAFSQTTHLIQHQRVHTG 37
Score = 28.2 bits (64), Expect = 0.36
Identities = 13/40 (32%), Positives = 17/40 (42%), Gaps = 6/40 (15%)
Query: 195 QHQKLHSGIT-YSCPSCSKSFNRKDRYRMHLKLHQGVRHT 233
+G Y C C K+F++ HL HQ V HT
Sbjct: 2 SSGSSGTGEKPYECKECGKAFSQ----TTHLIQHQRV-HT 36
>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 29.0 bits (66), Expect = 0.19
Identities = 9/23 (39%), Positives = 12/23 (52%)
Query: 180 CDQCDRTFSCMPYLRQHQKLHSG 202
C C + F +L QH +HSG
Sbjct: 15 CQVCGKAFRVSSHLVQHHSVHSG 37
Score = 29.0 bits (66), Expect = 0.20
Identities = 12/33 (36%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 124 YPCPECDKTFLSTSGLREHRKVHAGVR-YICHA 155
Y C C K F +S L +H VH+G R +
Sbjct: 13 YKCQVCGKAFRVSSHLVQHHSVHSGERPSGPSS 45
Score = 27.5 bits (62), Expect = 0.63
Identities = 11/40 (27%), Positives = 14/40 (35%), Gaps = 6/40 (15%)
Query: 195 QHQKLHSGIT-YSCPSCSKSFNRKDRYRMHLKLHQGVRHT 233
+G Y C C K+F HL H V H+
Sbjct: 2 SSGSSGTGEKPYKCQVCGKAFRV----SSHLVQHHSV-HS 36
>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 29.0 bits (66), Expect = 0.19
Identities = 12/36 (33%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
Query: 114 THLKTHEG-IIYPCPECDKTFLSTSGLREHRKVHAG 148
+ + G Y C EC K F S L H+ +H G
Sbjct: 2 SSGSSGTGEKPYKCHECGKVFRRNSHLARHQLIHTG 37
Score = 28.6 bits (65), Expect = 0.29
Identities = 8/23 (34%), Positives = 14/23 (60%)
Query: 180 CDQCDRTFSCMPYLRQHQKLHSG 202
C +C + F +L +HQ +H+G
Sbjct: 15 CHECGKVFRRNSHLARHQLIHTG 37
Score = 27.1 bits (61), Expect = 0.91
Identities = 13/40 (32%), Positives = 15/40 (37%), Gaps = 6/40 (15%)
Query: 195 QHQKLHSGIT-YSCPSCSKSFNRKDRYRMHLKLHQGVRHT 233
+G Y C C K F R HL HQ + HT
Sbjct: 2 SSGSSGTGEKPYKCHECGKVFRR----NSHLARHQLI-HT 36
>2epp_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 66
Score = 29.8 bits (66), Expect = 0.19
Identities = 11/28 (39%), Positives = 13/28 (46%)
Query: 120 EGIIYPCPECDKTFLSTSGLREHRKVHA 147
E I PC C K F + LR+H H
Sbjct: 10 EAGILPCGLCGKVFTDANRLRQHEAQHG 37
>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 29.0 bits (66), Expect = 0.22
Identities = 13/36 (36%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
Query: 114 THLKTHEG-IIYPCPECDKTFLSTSGLREHRKVHAG 148
+ + G Y C EC K F S L HR +H G
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLARHRGIHTG 37
Score = 28.2 bits (64), Expect = 0.37
Identities = 7/23 (30%), Positives = 16/23 (69%)
Query: 180 CDQCDRTFSCMPYLRQHQKLHSG 202
C++C + F+ +L +H+ +H+G
Sbjct: 15 CNECGKVFTQNSHLARHRGIHTG 37
Score = 26.3 bits (59), Expect = 1.5
Identities = 12/39 (30%), Positives = 16/39 (41%), Gaps = 6/39 (15%)
Query: 196 HQKLHSGIT-YSCPSCSKSFNRKDRYRMHLKLHQGVRHT 233
+G Y C C K F + HL H+G+ HT
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQ----NSHLARHRGI-HT 36
>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 28.6 bits (65), Expect = 0.25
Identities = 8/23 (34%), Positives = 17/23 (73%)
Query: 180 CDQCDRTFSCMPYLRQHQKLHSG 202
C +C ++++ +L QHQ++H+G
Sbjct: 15 CGECGKSYNQRVHLTQHQRVHTG 37
Score = 28.3 bits (64), Expect = 0.35
Identities = 10/36 (27%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 114 THLKTHEG-IIYPCPECDKTFLSTSGLREHRKVHAG 148
+ + G + C EC K++ L +H++VH G
Sbjct: 2 SSGSSGTGEKPFKCGECGKSYNQRVHLTQHQRVHTG 37
Score = 28.3 bits (64), Expect = 0.40
Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 6/39 (15%)
Query: 196 HQKLHSGIT-YSCPSCSKSFNRKDRYRMHLKLHQGVRHT 233
+G + C C KS+N+ R+HL HQ V HT
Sbjct: 3 SGSSGTGEKPFKCGECGKSYNQ----RVHLTQHQRV-HT 36
Score = 24.8 bits (55), Expect = 6.8
Identities = 8/33 (24%), Positives = 13/33 (39%), Gaps = 1/33 (3%)
Query: 223 HLKLHQGVR-HTCKECSKEFSNEYNLKNHMVLH 254
G + C EC K ++ +L H +H
Sbjct: 3 SGSSGTGEKPFKCGECGKSYNQRVHLTQHQRVH 35
>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 47
Score = 28.7 bits (65), Expect = 0.26
Identities = 10/40 (25%), Positives = 13/40 (32%), Gaps = 5/40 (12%)
Query: 195 QHQKLHSGIT-YSCPSCSKSFNRKDRYRMHLKLHQGVRHT 233
+G Y C C K+F + L H HT
Sbjct: 2 SSGSSGTGKKPYECIECGKAFIQN----TSLIRHWRYYHT 37
Score = 28.7 bits (65), Expect = 0.27
Identities = 12/45 (26%), Positives = 18/45 (40%), Gaps = 3/45 (6%)
Query: 114 THLKTHEGII-YPCPECDKTFLSTSGLREH-RKVHAGVR-YICHA 155
+ + G Y C EC K F+ + L H R H G + +
Sbjct: 2 SSGSSGTGKKPYECIECGKAFIQNTSLIRHWRYYHTGEKPSGPSS 46
>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 28.6 bits (65), Expect = 0.27
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 180 CDQCDRTFSCMPYLRQHQKLHSG 202
CD C + F L +HQ++H+G
Sbjct: 15 CDYCGKAFGLSAELVRHQRIHTG 37
Score = 28.2 bits (64), Expect = 0.36
Identities = 10/36 (27%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 114 THLKTHEG-IIYPCPECDKTFLSTSGLREHRKVHAG 148
+ + G Y C C K F ++ L H+++H G
Sbjct: 2 SSGSSGSGEKPYVCDYCGKAFGLSAELVRHQRIHTG 37
Score = 27.9 bits (63), Expect = 0.50
Identities = 10/36 (27%), Positives = 13/36 (36%), Gaps = 1/36 (2%)
Query: 195 QHQKLHSGIT-YSCPSCSKSFNRKDRYRMHLKLHQG 229
SG Y C C K+F H ++H G
Sbjct: 2 SSGSSGSGEKPYVCDYCGKAFGLSAELVRHQRIHTG 37
>2ent_A Krueppel-like factor 15; zinc binding, transcription factor,
adipogenesis, CLCNKA, chloride channel Ka, rhodopsin,
IRBP; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 48
Score = 28.4 bits (64), Expect = 0.35
Identities = 11/39 (28%), Positives = 17/39 (43%), Gaps = 3/39 (7%)
Query: 196 HQKLHSGIT-YSC--PSCSKSFNRKDRYRMHLKLHQGVR 231
+G ++C P C F+R D H + H GV+
Sbjct: 3 SGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRSHSGVK 41
Score = 26.1 bits (58), Expect = 1.9
Identities = 11/40 (27%), Positives = 18/40 (45%), Gaps = 3/40 (7%)
Query: 114 THLKTHEGII-YPC--PECDKTFLSTSGLREHRKVHAGVR 150
+ + G + C P C F + L HR+ H+GV+
Sbjct: 2 SSGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRSHSGVK 41
>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers,
4-stranded parallel/anti-parallel beta- sheet,
structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1
Length = 102
Score = 29.7 bits (66), Expect = 0.37
Identities = 13/59 (22%), Positives = 20/59 (33%), Gaps = 6/59 (10%)
Query: 96 RHPCPQCSRDFATVKILKTHLKT-----HEGIIYPCPECDKTFLSTSGLREH-RKVHAG 148
+ C C+ + + H+ + Y C EC+ L EH K H G
Sbjct: 18 GYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALSEHNLKYHPG 76
Score = 27.4 bits (60), Expect = 2.4
Identities = 17/78 (21%), Positives = 27/78 (34%), Gaps = 6/78 (7%)
Query: 214 FNRKDRYRMHLKLHQGVRHTCKECSKEFSNEYNLKNHMVLH--DVRA---YVCELCARQF 268
+ + K +G + CK C+ + + H+ +V YVC C
Sbjct: 2 AHHHHHHNQQNKKVEG-GYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLT 60
Query: 269 TRVDHFNHHRRLQHDPEE 286
R D + H H EE
Sbjct: 61 KRYDALSEHNLKYHPGEE 78
Score = 27.0 bits (59), Expect = 3.5
Identities = 12/62 (19%), Positives = 18/62 (29%), Gaps = 5/62 (8%)
Query: 194 RQHQKLHSGITYSCPSCSKSFNRKDRYRMHLKL-HQGVR----HTCKECSKEFSNEYNLK 248
Q Y C C+ + + H+ H V + C EC+ L
Sbjct: 8 HNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALS 67
Query: 249 NH 250
H
Sbjct: 68 EH 69
Score = 26.7 bits (58), Expect = 4.6
Identities = 15/69 (21%), Positives = 21/69 (30%), Gaps = 6/69 (8%)
Query: 140 REHRKVHAGVRYICHACPREFSSEATMKAHVAS-HNGVQ----HACDQCDRTFSCMPYLR 194
+ Y C C + HV S H V + C +C+ L
Sbjct: 8 HNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALS 67
Query: 195 QHQ-KLHSG 202
+H K H G
Sbjct: 68 EHNLKYHPG 76
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A
1are_A
Length = 29
Score = 27.7 bits (62), Expect = 0.42
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 257 RAYVCELCARQFTRVDHFNHHRR 279
R++VCE+C R F R +H H R
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYR 23
Score = 24.6 bits (54), Expect = 4.7
Identities = 6/28 (21%), Positives = 16/28 (57%)
Query: 204 TYSCPSCSKSFNRKDRYRMHLKLHQGVR 231
++ C C+++F R++ + H + H +
Sbjct: 2 SFVCEVCTRAFARQEHLKRHYRSHTNEK 29
>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human
papillomavirus, HPV E6 protein, de novo protein; NMR
{Synthetic} SCOP: k.12.1.1
Length = 33
Score = 27.6 bits (61), Expect = 0.53
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 205 YSCPSCSKSFNRKDRYRMHLKLHQGVR 231
++CP C K F R D H+ LH+ +
Sbjct: 3 FACPECPKRFMRSDHLSKHITLHELLG 29
Score = 24.9 bits (54), Expect = 3.9
Identities = 9/27 (33%), Positives = 15/27 (55%)
Query: 124 YPCPECDKTFLSTSGLREHRKVHAGVR 150
+ CPEC K F+ + L +H +H +
Sbjct: 3 FACPECPKRFMRSDHLSKHITLHELLG 29
Score = 24.5 bits (53), Expect = 6.6
Identities = 7/21 (33%), Positives = 11/21 (52%)
Query: 259 YVCELCARQFTRVDHFNHHRR 279
+ C C ++F R DH + H
Sbjct: 3 FACPECPKRFMRSDHLSKHIT 23
>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 37
Score = 27.5 bits (60), Expect = 0.54
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 201 SGITYSCPSCSKSFNRKDRYRMHLK 225
SG +YSCP C KSF+ + H+K
Sbjct: 6 SGRSYSCPVCEKSFSEDRLIKSHIK 30
Score = 26.0 bits (56), Expect = 2.4
Identities = 9/31 (29%), Positives = 21/31 (67%)
Query: 25 TSSTTPTRHPCPQCSRDFATVKILKTHLKTH 55
+S ++ + CP C + F+ +++K+H+KT+
Sbjct: 2 SSGSSGRSYSCPVCEKSFSEDRLIKSHIKTN 32
Score = 24.4 bits (52), Expect = 6.5
Identities = 8/23 (34%), Positives = 17/23 (73%)
Query: 97 HPCPQCSRDFATVKILKTHLKTH 119
+ CP C + F+ +++K+H+KT+
Sbjct: 10 YSCPVCEKSFSEDRLIKSHIKTN 32
>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 44
Score = 27.6 bits (60), Expect = 0.70
Identities = 11/34 (32%), Positives = 19/34 (55%)
Query: 171 ASHNGVQHACDQCDRTFSCMPYLRQHQKLHSGIT 204
+ H ++ C +C TF+ +L QHQK H+ +
Sbjct: 6 SGHTRKRYECSKCQATFNLRKHLIQHQKTHAAKS 39
>2lbc_A Ubiquitin carboxyl-terminal hydrolase 13; tandem UBA of USP13; NMR
{Homo sapiens}
Length = 126
Score = 29.1 bits (64), Expect = 0.74
Identities = 16/120 (13%), Positives = 36/120 (30%), Gaps = 11/120 (9%)
Query: 64 ECDKTFLSTLT--GTPQGARGRAVYLSRMSTTLTRHPCPQCSRDFATVKILKTHLKTHEG 121
+ D++ + L G P A +AVY T + + + ++ V + +
Sbjct: 1 DIDESSVMQLAEMGFPLEACRKAVYF-------TGNMGAEVAFNWIIVHMEEPDFAEPLT 53
Query: 122 IIYPCPECDKTFLSTSGLREHRKVHAGVRYICHACPREFSSEATMKAHVASHNGVQHACD 181
+ + F ++A A++N ++ A D
Sbjct: 54 MPGYGGAASAGASVFGA--SGLDNQPPEEIVAIITSMGFQRNQAIQALRATNNNLERALD 111
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human
papillomavirus, HPV E6 protein, de novo protein; NMR
{Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Length = 29
Score = 26.8 bits (59), Expect = 0.86
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 205 YSCPSCSKSFNRKDRYRMHLKLHQGVR 231
++CP C K F R D +H+ LH+ +
Sbjct: 3 FACPECPKRFMRSDHLTLHILLHENKK 29
Score = 24.5 bits (53), Expect = 5.5
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 124 YPCPECDKTFLSTSGLREHRKVHAGVR 150
+ CPEC K F+ + L H +H +
Sbjct: 3 FACPECPKRFMRSDHLTLHILLHENKK 29
Score = 24.1 bits (52), Expect = 8.3
Identities = 7/21 (33%), Positives = 10/21 (47%)
Query: 259 YVCELCARQFTRVDHFNHHRR 279
+ C C ++F R DH H
Sbjct: 3 FACPECPKRFMRSDHLTLHIL 23
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate;
signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Length = 226
Score = 29.7 bits (66), Expect = 0.99
Identities = 32/173 (18%), Positives = 52/173 (30%), Gaps = 39/173 (22%)
Query: 102 CSRDFAT--VKILK--THLKTHEGIIYPCPECDKTFLSTSGLREHRKVHAGVRYICHACP 157
++ +LK + I+Y F + + + + ++ H P
Sbjct: 85 ANKQTMEELKDLLKRQVEVNVRNKILYLIQAWAHAFRNEPKYKVVQDTYQIMKVEGHVFP 144
Query: 158 REFSSEATMKAHVASHNGVQHACDQCDRTFSCMPYLRQHQKLHSGITYSCPSCSKSFNRK 217
S+A A A C +C F M R+H C +C + F
Sbjct: 145 EFKESDAMFAAERAPDWVDAEECHRCRVQFGVMT--RKHH---------CRACGQIF--- 190
Query: 218 DRYRMHLKLHQGVRHTCKECSKEFSNEYNLKNHMVLHDVRAYVCELCARQFTR 270
C +CS S + + +VR VCE C Q R
Sbjct: 191 ----------------CGKCS---SKYSTIPKFGIEKEVR--VCEPCYEQLNR 222
>3ray_A PR domain-containing protein 11; structural genomics consortium,
SGC, histone methylation, Zn transcriptional regulation,
chromatin, transcription; 1.73A {Homo sapiens}
Length = 237
Score = 29.4 bits (65), Expect = 1.2
Identities = 7/55 (12%), Positives = 16/55 (29%), Gaps = 1/55 (1%)
Query: 120 EGIIYPCPECDKTFLSTSGLREHRKVHAG-VRYICHACPREFSSEATMKAHVASH 173
++ + K S S HR + G R + + ++ +
Sbjct: 177 WLRVWYSEDYMKRLHSMSQETIHRNLARGEKRLQREKSEQVLDNPEDLRGPIHLS 231
Score = 29.0 bits (64), Expect = 1.6
Identities = 6/49 (12%), Positives = 13/49 (26%), Gaps = 1/49 (2%)
Query: 180 CDQCDRTFSCMPYLRQHQKLHSGI-TYSCPSCSKSFNRKDRYRMHLKLH 227
+ + M H+ L G + + + R + L
Sbjct: 183 SEDYMKRLHSMSQETIHRNLARGEKRLQREKSEQVLDNPEDLRGPIHLS 231
Score = 27.5 bits (60), Expect = 4.4
Identities = 5/56 (8%), Positives = 13/56 (23%), Gaps = 1/56 (1%)
Query: 92 TTLTRHPCPQCSRDFATVKILKTHLKTHEGII-YPCPECDKTFLSTSGLREHRKVH 146
L + ++ H G + ++ + LR +
Sbjct: 176 EWLRVWYSEDYMKRLHSMSQETIHRNLARGEKRLQREKSEQVLDNPEDLRGPIHLS 231
Score = 26.7 bits (58), Expect = 8.9
Identities = 13/91 (14%), Positives = 32/91 (35%), Gaps = 9/91 (9%)
Query: 176 VQHACDQCDRTFSCM-----PYLRQHQKLHSG---ITYSCPSCSKSFNRKDRYRMHLKLH 227
V + ++ ++ Y R + + G + K + + +H L
Sbjct: 144 VVISREEREQNLLAFQHSERIYFRACRDIRPGEWLRVWYSEDYMKRLHSMSQETIHRNLA 203
Query: 228 QG-VRHTCKECSKEFSNEYNLKNHMVLHDVR 257
+G R ++ + N +L+ + L +R
Sbjct: 204 RGEKRLQREKSEQVLDNPEDLRGPIHLSVLR 234
>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 44
Score = 26.8 bits (58), Expect = 1.3
Identities = 12/23 (52%), Positives = 15/23 (65%)
Query: 126 CPECDKTFLSTSGLREHRKVHAG 148
C EC K F +S L EH+ +HAG
Sbjct: 15 CQECGKIFRHSSLLIEHQALHAG 37
Score = 24.9 bits (53), Expect = 6.9
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 180 CDQCDRTFSCMPYLRQHQKLHSG 202
C +C + F L +HQ LH+G
Sbjct: 15 CQECGKIFRHSSLLIEHQALHAG 37
>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens}
SCOP: g.37.1.1 PDB: 1va2_A
Length = 31
Score = 25.6 bits (57), Expect = 1.9
Identities = 9/29 (31%), Positives = 13/29 (44%), Gaps = 2/29 (6%)
Query: 205 YSC--PSCSKSFNRKDRYRMHLKLHQGVR 231
+ C C K F R D + H + H G +
Sbjct: 3 FMCTWSYCGKRFTRSDELQRHKRTHTGEK 31
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR;
fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
RED beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 29.1 bits (65), Expect = 2.1
Identities = 20/90 (22%), Positives = 30/90 (33%), Gaps = 18/90 (20%)
Query: 217 KDRYRMHLKLHQGVRHTCKECSKEFSNEYNLKNHMVL------HDVRAYVC-ELCARQFT 269
K +Y + H G+R E N YN + ++ D+ + + A QF
Sbjct: 891 KAKYETSILEHSGIR----LIEPELFNGYNPEKKEMIQEVIVEEDLEPFEASKETAEQF- 945
Query: 270 RVDHFNHHRRLQHDPEEFE-----KVGATL 294
+ PE E GATL
Sbjct: 946 -KHQHGDKVDIFEIPETGEYSVKLLKGATL 974
>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}
Length = 32
Score = 25.4 bits (55), Expect = 2.4
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 205 YSCPSCSKSFNRKDRYRMHLK 225
++CP+C K F R D H+K
Sbjct: 3 FACPACPKRFMRSDALSKHIK 23
Score = 23.9 bits (51), Expect = 9.3
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 124 YPCPECDKTFLSTSGLREHRK 144
+ CP C K F+ + L +H K
Sbjct: 3 FACPACPKRFMRSDALSKHIK 23
>3gox_A Restriction endonuclease HPY99I; endonuclease-DNA complex,
restriction enzyme, HPY99I, pseudopalindrome; HET: 1PE;
1.50A {Helicobacter pylori} PDB: 3fc3_A*
Length = 200
Score = 28.3 bits (62), Expect = 2.7
Identities = 13/92 (14%), Positives = 23/92 (25%), Gaps = 8/92 (8%)
Query: 207 CPSCSKSFNRKDRYRMHLK--LHQGVRHTCKECSKEFSNEYNLK------NHMVLHDVRA 258
C C N + R +C+EC K + +
Sbjct: 78 CNICHILKNTDGFEINQTDAKGRKTTRPSCRECRKNIDGVKLSSTEKKKMDEIAPPKGSV 137
Query: 259 YVCELCARQFTRVDHFNHHRRLQHDPEEFEKV 290
+ C +C ++ N HD +
Sbjct: 138 FTCPICEKRSIVGVTANLVHDHNHDTGWGREW 169
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 30
Score = 25.6 bits (56), Expect = 2.7
Identities = 10/26 (38%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Query: 205 YSCPSCSKSFNRKDRYRMHL-KLHQG 229
Y+C C+++F R+D H K+H G
Sbjct: 3 YACGLCNRAFTRRDLLIRHAQKIHSG 28
Score = 24.4 bits (53), Expect = 7.0
Identities = 12/26 (46%), Positives = 14/26 (53%)
Query: 257 RAYVCELCARQFTRVDHFNHHRRLQH 282
+AY C LC R FTR D H + H
Sbjct: 1 KAYACGLCNRAFTRRDLLIRHAQKIH 26
>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI,
protein structure initiative, center for eukaryotic
structural genomics, CESG; NMR {Homo sapiens} SCOP:
g.37.1.4
Length = 124
Score = 27.3 bits (60), Expect = 2.8
Identities = 5/21 (23%), Positives = 12/21 (57%)
Query: 124 YPCPECDKTFLSTSGLREHRK 144
+ C C + F+ ++ L+ H +
Sbjct: 51 HRCLACARYFIDSTNLKTHFR 71
Score = 26.6 bits (58), Expect = 5.4
Identities = 9/23 (39%), Positives = 12/23 (52%)
Query: 32 RHPCPQCSRDFATVKILKTHLKT 54
H C C+R F LKTH ++
Sbjct: 50 LHRCLACARYFIDSTNLKTHFRS 72
Score = 26.6 bits (58), Expect = 5.4
Identities = 9/23 (39%), Positives = 12/23 (52%)
Query: 96 RHPCPQCSRDFATVKILKTHLKT 118
H C C+R F LKTH ++
Sbjct: 50 LHRCLACARYFIDSTNLKTHFRS 72
Score = 26.6 bits (58), Expect = 5.7
Identities = 8/21 (38%), Positives = 11/21 (52%)
Query: 231 RHTCKECSKEFSNEYNLKNHM 251
H C C++ F + NLK H
Sbjct: 50 LHRCLACARYFIDSTNLKTHF 70
>3nwa_A GB, GB-1, GB1, envelope glycoprotein B; coiled-coil, membrane
fusion, viral P glycoprotein B, HSV-1, membrane; HET:
NAG; 2.26A {Human herpesvirus 1} PDB: 3nwf_A* 3nw8_A*
3nwd_A*
Length = 703
Score = 28.8 bits (64), Expect = 2.8
Identities = 13/51 (25%), Positives = 19/51 (37%), Gaps = 1/51 (1%)
Query: 6 SPTTNNPSTTNTTPTPTTQTSSTTPTRHPCP-QCSRDFATVKILKTHLKTH 55
P T P PT + ++P P + + D ATV L+ H
Sbjct: 23 GPATPAPPALGAAPTGDPKPKKNKKPKNPTPPRPAGDNATVAAGHATLREH 73
>2a1r_A Poly(A)-specific ribonuclease PARN; DEDD, nuclease domain,
hydrolase-RNA complex; 2.60A {Homo sapiens} PDB: 2a1s_A
Length = 430
Score = 28.4 bits (62), Expect = 2.8
Identities = 16/128 (12%), Positives = 41/128 (32%), Gaps = 9/128 (7%)
Query: 132 TFLSTSGLREHRKVHAGVRYICHACPREFSSEATMKAHVASHNGVQHACDQCDRTFSCMP 191
FL++ G ++ G+ Y+ R+ + K A+ G + + + +
Sbjct: 114 DFLASQGFDFNKVFRNGIPYLNQEEERQLREQYDEKRSQANGAGA-LSYVSPNTSKCPVT 172
Query: 192 YLRQHQKLHSGITYSCPSCSKSFNRKD-------RYRMHLKLHQGVRHTCKECSKEFSNE 244
+K + +S K+ ++ L ++Q + + + E
Sbjct: 173 IPEDQKKFIDQVVEKIEDLLQSEENKNLDLEPCTGFQRKL-IYQTLSWKYPKGIHVETLE 231
Query: 245 YNLKNHMV 252
K +
Sbjct: 232 TEKKERYI 239
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 28.1 bits (62), Expect = 2.9
Identities = 8/52 (15%), Positives = 15/52 (28%), Gaps = 6/52 (11%)
Query: 14 TTNTTPTPTTQTSSTTPTRHPCPQCSRDFATVKILKTHLKTHEGIIYPCPEC 65
T + + CP+C KI++ + + C C
Sbjct: 3 TRESIDKRAGRRGPNLNIVLTCPECKVY--PPKIVERF-SEGDVV---CALC 48
Score = 27.7 bits (61), Expect = 3.6
Identities = 8/37 (21%), Positives = 11/37 (29%), Gaps = 10/37 (27%)
Query: 230 VRHTCKECSKEFSNEYNLKNHMVLHDVRA--YVCELC 264
+ TC EC ++ VC LC
Sbjct: 20 IVLTCPECKVYPPK--------IVERFSEGDVVCALC 48
>3ghp_A Cellulosomal scaffoldin adaptor protein B; linker segments, beta
barrel, alpha helix, beta flaps, structural protein;
2.49A {Acetivibrio cellulolyticus}
Length = 227
Score = 28.3 bits (62), Expect = 3.0
Identities = 14/50 (28%), Positives = 20/50 (40%), Gaps = 3/50 (6%)
Query: 6 SPTTNNPSTTNTTPTPTTQTSSTTPTRHPCPQCSRDFATVKILKTHLKTH 55
+PTT + +T PT T + TPT T + L+ H H
Sbjct: 181 TPTTKPTAFASTMPTVTL---TPTPTATTTTTIPTAVPTTESLEHHHHHH 227
>4dgw_A PRE-mRNA-splicing factor PRP9; zinc finger; 3.11A {Saccharomyces
cerevisiae}
Length = 402
Score = 28.3 bits (62), Expect = 3.3
Identities = 5/18 (27%), Positives = 9/18 (50%)
Query: 234 CKECSKEFSNEYNLKNHM 251
C CS+ F ++H+
Sbjct: 295 CPFCSRWFKTSSVFESHL 312
Score = 27.5 bits (60), Expect = 5.9
Identities = 11/58 (18%), Positives = 21/58 (36%), Gaps = 4/58 (6%)
Query: 207 CPSCSKSFNRKDRYRMHL--KLHQGVRHTCKECSKEFSNEYNLKNHM--VLHDVRAYV 260
CP CS+ F + HL K+H+ + + ++ R++V
Sbjct: 295 CPFCSRWFKTSSVFESHLVGKIHKKNESKRRNFVYSEYKLHRYLKYLNDEFSRTRSFV 352
Score = 27.1 bits (59), Expect = 7.0
Identities = 5/27 (18%), Positives = 12/27 (44%)
Query: 153 CHACPREFSSEATMKAHVASHNGVQHA 179
C C R F + + ++H+ ++
Sbjct: 295 CPFCSRWFKTSSVFESHLVGKIHKKNE 321
>3u50_C Telomerase-associated protein 82; TEB1, processivity factor, DNA
BIND protein; 2.50A {Tetrahymena thermophila}
Length = 172
Score = 27.7 bits (61), Expect = 3.6
Identities = 4/23 (17%), Positives = 10/23 (43%)
Query: 204 TYSCPSCSKSFNRKDRYRMHLKL 226
++ C SC + N + + +
Sbjct: 59 SFFCESCQQFINPQVHLMLRAFV 81
>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 25.2 bits (54), Expect = 4.3
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 205 YSCPSCSKSFNRKDRYRMHLKLHQG 229
++C C+K F K + HL++H
Sbjct: 10 FTCEYCNKVFKFKHSLQAHLRIHTN 34
>2akl_A PHNA-like protein PA0128; two domains, Zn binding protein,
beta-strand protein, structural genomics, PSI; NMR
{Pseudomonas aeruginosa PAO1} SCOP: b.34.11.2 g.41.3.5
Length = 138
Score = 27.1 bits (60), Expect = 4.4
Identities = 15/52 (28%), Positives = 22/52 (42%), Gaps = 14/52 (26%)
Query: 80 ARGRAVYL--SRMSTTLTRHPCPQCSRDFATVKILKTHLKTHEGIIYPCPEC 129
+ GR M +TL PCPQC+ ++ +G + CPEC
Sbjct: 11 SSGRENLYFQGHMVSTLP--PCPQCNSEYT----------YEDGALLVCPEC 50
>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 25.2 bits (54), Expect = 4.5
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 124 YPCPECDKTFLSTSGLREHRKVHAG 148
+ C EC + F L EH+ +H G
Sbjct: 13 HQCRECGEIFFQYVSLIEHQVLHMG 37
>3flo_B DNA polymerase alpha catalytic subunit A; protein-protein complex,
phosphoesterase fold, OB fold, zinc-binding motif, DNA
replication; HET: DNA; 2.50A {Saccharomyces cerevisiae}
Length = 206
Score = 27.4 bits (60), Expect = 4.5
Identities = 18/84 (21%), Positives = 26/84 (30%), Gaps = 10/84 (11%)
Query: 204 TYSCPSCSKSFNRKDRYRMHLKLHQGVRHTCKECSKEFSNEY-------NLKNHMVLHDV 256
SCPSC K F + CK C + F+ +++ H+ L+
Sbjct: 22 ELSCPSCDKRFPFGGIVSSNYYRVSYNGLQCKHCEQLFTPLQLTSQIEHSIRAHISLYYA 81
Query: 257 RAYVC--ELCARQFTRVDHFNHHR 278
C C TR R
Sbjct: 82 GWLQCDDSTCGIV-TRQVSVFGKR 104
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE]
hydrogenase maturation, zinc-finger, nickel binding,
metal-binding; HET: FME; 2.30A {Pyrococcus
kodakaraensis} PDB: 3a44_A*
Length = 139
Score = 26.9 bits (59), Expect = 5.1
Identities = 6/41 (14%), Positives = 10/41 (24%)
Query: 62 CPECDKTFLSTLTGTPQGARGRAVYLSRMSTTLTRHPCPQC 102
C C+ + R + CP+C
Sbjct: 73 CRNCNYEWKLKEVKDKFDERIKEDIHFIPEVVHAFLACPKC 113
>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding
protein; NMR {Homo sapiens}
Length = 37
Score = 24.6 bits (54), Expect = 5.3
Identities = 10/24 (41%), Positives = 12/24 (50%)
Query: 127 PECDKTFLSTSGLREHRKVHAGVR 150
C K + TS LR H + H G R
Sbjct: 14 QGCGKVYGKTSHLRAHLRWHTGER 37
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR
{Xenopus laevis} SCOP: g.37.1.1
Length = 27
Score = 24.7 bits (53), Expect = 5.3
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 124 YPCPECDKTFLSTSGLREHRKVH 146
Y C C+++F+ S L H++VH
Sbjct: 2 YKCGLCERSFVEKSALSRHQRVH 24
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate;
VHS, FYVE, zinc finger, superhelix, transferase; HET:
CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2
g.50.1.1
Length = 220
Score = 27.4 bits (60), Expect = 5.4
Identities = 20/136 (14%), Positives = 37/136 (27%), Gaps = 18/136 (13%)
Query: 140 REHRKVHAGVRYICHACPREFSSEATMKAHVASHNGVQHACDQCDRTFSCMPYLRQHQKL 199
H V + + F S +A + ++
Sbjct: 97 TPHENVRQKMLELVQTWAYAFRSSDKYQAIKDTMTILKAKGHTFPELREADAMFTADTAP 156
Query: 200 HSGITYSCPSCSKSFNRKDRYRMHLKLHQGVRHTCKECSKEF-----SNEYNLKNHMVLH 254
+ C C F +R +H C+ C + F + + L + +
Sbjct: 157 NWADGRVCHRCRVEFTFTNR-----------KHHCRNCGQVFCGQCTAKQCPLPKYGIEK 205
Query: 255 DVRAYVCELCARQFTR 270
+VR VC+ C R
Sbjct: 206 EVR--VCDGCFAALQR 219
>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA
motif, metal binding protein; NMR {Synthetic} SCOP:
g.37.1.3 PDB: 2l1o_A
Length = 39
Score = 24.7 bits (54), Expect = 5.5
Identities = 9/24 (37%), Positives = 10/24 (41%)
Query: 123 IYPCPECDKTFLSTSGLREHRKVH 146
Y C C + F S L H VH
Sbjct: 6 SYTCSFCKREFRSAQALGGHMNVH 29
>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 24.3 bits (52), Expect = 7.7
Identities = 9/27 (33%), Positives = 16/27 (59%)
Query: 228 QGVRHTCKECSKEFSNEYNLKNHMVLH 254
G+ + C C ++F NE + HM++H
Sbjct: 6 SGLLYDCHICERKFKNELDRDRHMLVH 32
>1lki_A Leukemia inhibitory factor; cytokine, four helix bundle; 2.00A
{Mus musculus} SCOP: a.26.1.1 PDB: 1a7m_A 2q7n_B*
1pvh_B 1emr_A
Length = 180
Score = 26.7 bits (58), Expect = 7.8
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 18 TPTPTTQTSSTTPTRHPCP 36
+P P T ++T RHPC
Sbjct: 1 SPLPITPVNATCAIRHPCH 19
>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif,
transcription regulation, zinc-finger; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 47
Score = 24.4 bits (53), Expect = 8.1
Identities = 11/30 (36%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Query: 204 TYSC--PSCSKSFNRKDRYRMHLKLHQGVR 231
T+ C P C+K+F R+ R H++ H R
Sbjct: 18 TFECLFPGCTKTFKRRYNIRSHIQTHLEDR 47
>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 24.0 bits (51), Expect = 8.9
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 231 RHTCKECSKEFSNEYNLKNHMVLH 254
H C C K+F ++ LK+H +LH
Sbjct: 9 THLCDMCGKKFKSKGTLKSHKLLH 32
>3muu_A Structural polyprotein; beta barrels, IG-like folds, viral protein;
HET: NAG BMA MAN; 3.29A {Sindbis virus} PDB: 3muw_A
3muw_U 1z8y_A 1z8y_B
Length = 750
Score = 26.9 bits (59), Expect = 8.9
Identities = 13/76 (17%), Positives = 24/76 (31%), Gaps = 13/76 (17%)
Query: 125 PCPECDKTFLSTSGLREHRKVHAG--VRYICHACPREFSSEATMKAHVASHNGVQHACDQ 182
P P ++L S + + K +G + Y C C + + + +
Sbjct: 171 PRPHAYTSYLEESSGKVYAKPPSGKNITYEC-KCGDYKTGTVSTRTEI----------TG 219
Query: 183 CDRTFSCMPYLRQHQK 198
C C+ Y K
Sbjct: 220 CTAIKQCVAYKSDQTK 235
>3pur_A Lysine-specific demethylase 7 homolog;
oxidoreductase-oxidoreductase inhibitor complex; HET:
2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A*
3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A*
Length = 528
Score = 27.0 bits (58), Expect = 9.0
Identities = 10/113 (8%), Positives = 23/113 (20%), Gaps = 4/113 (3%)
Query: 179 ACDQCDRTF--SCMPYLRQHQKLHSGITYSCPSCSKSFNRKDRYRMHLKLHQGVRHTCKE 236
CD C + C + L+ + CP C RY++ ++
Sbjct: 60 GCDSCQTWYHFLCSGLEQFEYYLYE--KFFCPKCVPHTGHSIRYKVVAPHRYRWYSPNEK 117
Query: 237 CSKEFSNEYNLKNHMVLHDVRAYVCELCARQFTRVDHFNHHRRLQHDPEEFEK 289
+ + + + +
Sbjct: 118 HLGIEVGSKTWIEDFITRENTVPSPTDDEVCIVEDGYEFRREFEKLGGADNWG 170
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.132 0.431
Gapped
Lambda K H
0.267 0.0472 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,392,974
Number of extensions: 245030
Number of successful extensions: 2795
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2192
Number of HSP's successfully gapped: 888
Length of query: 294
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 201
Effective length of database: 4,105,140
Effective search space: 825133140
Effective search space used: 825133140
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 57 (26.4 bits)