RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy6546
(294 letters)
>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo
sapiens) [TaxId: 9606]}
Length = 53
Score = 33.9 bits (77), Expect = 0.001
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 205 YSCPSCSKSFNRKDRYRMHLKLHQG-VRHTCKECSKEFSNEYNLKNHMVLH 254
Y C C KSF K + H+ +H G + C C K+F +++L HM +H
Sbjct: 4 YPC-QCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIH 53
Score = 33.1 bits (75), Expect = 0.003
Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Query: 182 QCDRTFSCMPYLRQHQKLHSG-ITYSCPSCSKSFNRKDRYRMHLKLH 227
QC ++F+ +H +H G Y C C K F K H+K+H
Sbjct: 7 QCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIH 53
Score = 31.6 bits (71), Expect = 0.011
Identities = 14/47 (29%), Positives = 18/47 (38%), Gaps = 1/47 (2%)
Query: 101 QCSRDFATVKILKTHLKTHEGIIYP-CPECDKTFLSTSGLREHRKVH 146
QC + F H+ H G+ C C K F L H K+H
Sbjct: 7 QCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIH 53
Score = 31.2 bits (70), Expect = 0.015
Identities = 14/51 (27%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Query: 151 YICHACPREFSSEATMKAHVASHNGVQHA-CDQCDRTFSCMPYLRQHQKLH 200
Y C C + F+ ++ H++ H G++ C C + F +L H K+H
Sbjct: 4 YPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIH 53
Score = 30.4 bits (68), Expect = 0.026
Identities = 12/45 (26%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Query: 236 ECSKEFSNEYNLKNHM-VLHDVRAYVCELCARQFTRVDHFNHHRR 279
+C K F+++ HM + +R Y C +C ++F H H +
Sbjct: 7 QCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMK 51
Score = 23.5 bits (50), Expect = 7.6
Identities = 9/31 (29%), Positives = 12/31 (38%)
Query: 89 RMSTTLTRHPCPQCSRDFATVKILKTHLKTH 119
M L + C C + F L H+K H
Sbjct: 23 SMHLGLRPYGCGVCGKKFKMKHHLVGHMKIH 53
>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 33
Score = 31.4 bits (72), Expect = 0.008
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 178 HACDQCDRTFSCMPYLRQHQKLHSG 202
+ C +C + FS L QHQ++H+G
Sbjct: 8 YGCVECGKAFSRSSILVQHQRVHTG 32
Score = 30.7 bits (70), Expect = 0.012
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 124 YPCPECDKTFLSTSGLREHRKVHAG 148
Y C EC K F +S L +H++VH G
Sbjct: 8 YGCVECGKAFSRSSILVQHQRVHTG 32
Score = 27.6 bits (62), Expect = 0.15
Identities = 9/23 (39%), Positives = 11/23 (47%)
Query: 232 HTCKECSKEFSNEYNLKNHMVLH 254
+ C EC K FS L H +H
Sbjct: 8 YGCVECGKAFSRSSILVQHQRVH 30
Score = 26.8 bits (60), Expect = 0.31
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 205 YSCPSCSKSFNRKDRYRMHLKLHQG 229
Y C C K+F+R H ++H G
Sbjct: 8 YGCVECGKAFSRSSILVQHQRVHTG 32
Score = 24.1 bits (53), Expect = 2.5
Identities = 8/25 (32%), Positives = 13/25 (52%)
Query: 33 HPCPQCSRDFATVKILKTHLKTHEG 57
+ C +C + F+ IL H + H G
Sbjct: 8 YGCVECGKAFSRSSILVQHQRVHTG 32
Score = 24.1 bits (53), Expect = 2.5
Identities = 8/25 (32%), Positives = 13/25 (52%)
Query: 97 HPCPQCSRDFATVKILKTHLKTHEG 121
+ C +C + F+ IL H + H G
Sbjct: 8 YGCVECGKAFSRSSILVQHQRVHTG 32
Score = 23.3 bits (51), Expect = 5.4
Identities = 7/23 (30%), Positives = 11/23 (47%)
Query: 257 RAYVCELCARQFTRVDHFNHHRR 279
+ Y C C + F+R H+R
Sbjct: 6 KPYGCVECGKAFSRSSILVQHQR 28
>d2epqa1 g.37.1.1 (A:380-411) PATZ1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 32
Score = 30.8 bits (69), Expect = 0.013
Identities = 13/28 (46%), Positives = 15/28 (53%)
Query: 205 YSCPSCSKSFNRKDRYRMHLKLHQGVRH 232
YSCP C F RKDR H++ H G
Sbjct: 4 YSCPVCGLRFKRKDRMSYHVRSHDGSVG 31
Score = 23.5 bits (50), Expect = 6.0
Identities = 10/28 (35%), Positives = 12/28 (42%)
Query: 151 YICHACPREFSSEATMKAHVASHNGVQH 178
Y C C F + M HV SH+G
Sbjct: 4 YSCPVCGLRFKRKDRMSYHVRSHDGSVG 31
>d2eppa1 g.37.1.1 (A:286-338) PATZ1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 53
Score = 31.1 bits (70), Expect = 0.014
Identities = 11/27 (40%), Positives = 13/27 (48%)
Query: 120 EGIIYPCPECDKTFLSTSGLREHRKVH 146
E I PC C K F + LR+H H
Sbjct: 3 EAGILPCGLCGKVFTDANRLRQHEAQH 29
Score = 26.1 bits (57), Expect = 0.82
Identities = 9/31 (29%), Positives = 13/31 (41%)
Query: 226 LHQGVRHTCKECSKEFSNEYNLKNHMVLHDV 256
L + C C K F++ L+ H H V
Sbjct: 1 LREAGILPCGLCGKVFTDANRLRQHEAQHGV 31
Score = 23.8 bits (51), Expect = 5.7
Identities = 9/29 (31%), Positives = 10/29 (34%)
Query: 199 LHSGITYSCPSCSKSFNRKDRYRMHLKLH 227
L C C K F +R R H H
Sbjct: 1 LREAGILPCGLCGKVFTDANRLRQHEAQH 29
Score = 23.8 bits (51), Expect = 6.3
Identities = 7/14 (50%), Positives = 7/14 (50%)
Query: 56 EGIIYPCPECDKTF 69
E I PC C K F
Sbjct: 3 EAGILPCGLCGKVF 16
>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 28
Score = 30.7 bits (70), Expect = 0.014
Identities = 9/25 (36%), Positives = 12/25 (48%)
Query: 178 HACDQCDRTFSCMPYLRQHQKLHSG 202
C C R FS +L H + H+G
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTG 28
Score = 30.3 bits (69), Expect = 0.016
Identities = 7/25 (28%), Positives = 11/25 (44%)
Query: 124 YPCPECDKTFLSTSGLREHRKVHAG 148
+ C C + F + L H + H G
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTG 28
Score = 27.2 bits (61), Expect = 0.18
Identities = 7/23 (30%), Positives = 11/23 (47%)
Query: 232 HTCKECSKEFSNEYNLKNHMVLH 254
C+ C + FS +L H+ H
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTH 26
Score = 26.4 bits (59), Expect = 0.42
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 205 YSCPSCSKSFNRKDRYRMHLKLHQG 229
+ C C ++F+R D H++ H G
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTG 28
Score = 23.3 bits (51), Expect = 5.1
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 259 YVCELCARQFTRVDHFNHHRR 279
+ C +C R F+R DH H R
Sbjct: 4 FQCRICMRNFSRSDHLTTHIR 24
Score = 23.0 bits (50), Expect = 7.0
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 33 HPCPQCSRDFATVKILKTHLKTHEG 57
C C R+F+ L TH++TH G
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTG 28
Score = 23.0 bits (50), Expect = 7.0
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 97 HPCPQCSRDFATVKILKTHLKTHEG 121
C C R+F+ L TH++TH G
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTG 28
>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on
Saccharomyces cerevisiae sequence}
Length = 29
Score = 29.9 bits (68), Expect = 0.026
Identities = 6/25 (24%), Positives = 10/25 (40%)
Query: 124 YPCPECDKTFLSTSGLREHRKVHAG 148
+ C C + F L+ H + H
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTN 27
Score = 29.9 bits (68), Expect = 0.026
Identities = 7/25 (28%), Positives = 14/25 (56%)
Query: 178 HACDQCDRTFSCMPYLRQHQKLHSG 202
C+ C R F+ +L++H + H+
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTN 27
Score = 27.2 bits (61), Expect = 0.19
Identities = 7/23 (30%), Positives = 13/23 (56%)
Query: 232 HTCKECSKEFSNEYNLKNHMVLH 254
C+ C++ F+ + +LK H H
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSH 25
Score = 26.4 bits (59), Expect = 0.39
Identities = 6/25 (24%), Positives = 14/25 (56%)
Query: 205 YSCPSCSKSFNRKDRYRMHLKLHQG 229
+ C C+++F R++ + H + H
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTN 27
Score = 24.1 bits (53), Expect = 2.8
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 257 RAYVCELCARQFTRVDHFNHHRR 279
R++VCE+C R F R +H H R
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYR 23
Score = 23.4 bits (51), Expect = 4.9
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 33 HPCPQCSRDFATVKILKTHLKTHEG 57
C C+R FA + LK H ++H
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTN 27
Score = 23.4 bits (51), Expect = 4.9
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 97 HPCPQCSRDFATVKILKTHLKTHEG 121
C C+R FA + LK H ++H
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTN 27
>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 39
Score = 29.2 bits (66), Expect = 0.057
Identities = 11/33 (33%), Positives = 14/33 (42%), Gaps = 2/33 (6%)
Query: 124 YPCPECDKTFLSTSGLREH-RKVHAGVR-YICH 154
Y C C K F L H ++VH R + C
Sbjct: 6 YICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQ 38
Score = 27.7 bits (62), Expect = 0.20
Identities = 9/34 (26%), Positives = 16/34 (47%), Gaps = 2/34 (5%)
Query: 232 HTCKECSKEFSNEYNLKNHMVLH--DVRAYVCEL 263
+ C+ C K FS +L H+ R + C++
Sbjct: 6 YICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQV 39
Score = 25.7 bits (57), Expect = 1.0
Identities = 7/26 (26%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Query: 178 HACDQCDRTFSCMPYLRQH-QKLHSG 202
+ C C + FS +L H +++H+
Sbjct: 6 YICQSCGKGFSRPDHLNGHIKQVHTS 31
Score = 24.6 bits (54), Expect = 2.3
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 257 RAYVCELCARQFTRVDHFNHHRRLQH 282
+ Y+C+ C + F+R DH N H + H
Sbjct: 4 KPYICQSCGKGFSRPDHLNGHIKQVH 29
Score = 23.8 bits (52), Expect = 4.2
Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Query: 205 YSCPSCSKSFNRKDRYRMHLK-LHQGVR-HTCK 235
Y C SC K F+R D H+K +H R H C+
Sbjct: 6 YICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQ 38
>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 26
Score = 28.3 bits (64), Expect = 0.071
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 124 YPCPECDKTFLSTSGLREHRKVH 146
Y C EC K F SGL H+++H
Sbjct: 3 YKCLECGKAFSQNSGLINHQRIH 25
Score = 27.6 bits (62), Expect = 0.16
Identities = 8/24 (33%), Positives = 14/24 (58%)
Query: 178 HACDQCDRTFSCMPYLRQHQKLHS 201
+ C +C + FS L HQ++H+
Sbjct: 3 YKCLECGKAFSQNSGLINHQRIHT 26
Score = 23.7 bits (52), Expect = 3.6
Identities = 10/23 (43%), Positives = 12/23 (52%)
Query: 232 HTCKECSKEFSNEYNLKNHMVLH 254
+ C EC K FS L NH +H
Sbjct: 3 YKCLECGKAFSQNSGLINHQRIH 25
>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 67
Score = 29.3 bits (66), Expect = 0.085
Identities = 8/21 (38%), Positives = 11/21 (52%)
Query: 231 RHTCKECSKEFSNEYNLKNHM 251
H C C++ F + NLK H
Sbjct: 15 LHRCLACARYFIDSTNLKTHF 35
Score = 27.7 bits (62), Expect = 0.30
Identities = 9/23 (39%), Positives = 12/23 (52%)
Query: 32 RHPCPQCSRDFATVKILKTHLKT 54
H C C+R F LKTH ++
Sbjct: 15 LHRCLACARYFIDSTNLKTHFRS 37
Score = 27.7 bits (62), Expect = 0.30
Identities = 9/23 (39%), Positives = 12/23 (52%)
Query: 96 RHPCPQCSRDFATVKILKTHLKT 118
H C C+R F LKTH ++
Sbjct: 15 LHRCLACARYFIDSTNLKTHFRS 37
Score = 26.2 bits (58), Expect = 1.1
Identities = 7/23 (30%), Positives = 12/23 (52%), Gaps = 2/23 (8%)
Query: 126 CPECDKTFLSTSGLREHR--KVH 146
C C + F+ ++ L+ H K H
Sbjct: 18 CLACARYFIDSTNLKTHFRSKDH 40
Score = 25.0 bits (55), Expect = 3.3
Identities = 8/23 (34%), Positives = 10/23 (43%)
Query: 150 RYICHACPREFSSEATMKAHVAS 172
+ C AC R F +K H S
Sbjct: 15 LHRCLACARYFIDSTNLKTHFRS 37
>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 28.5 bits (64), Expect = 0.085
Identities = 10/28 (35%), Positives = 12/28 (42%)
Query: 124 YPCPECDKTFLSTSGLREHRKVHAGVRY 151
Y C CDKTF L H K + +
Sbjct: 9 YACSHCDKTFRQKQLLDMHFKRYHDPNF 36
Score = 28.5 bits (64), Expect = 0.091
Identities = 9/28 (32%), Positives = 13/28 (46%)
Query: 178 HACDQCDRTFSCMPYLRQHQKLHSGITY 205
+AC CD+TF L H K + +
Sbjct: 9 YACSHCDKTFRQKQLLDMHFKRYHDPNF 36
Score = 26.6 bits (59), Expect = 0.39
Identities = 8/31 (25%), Positives = 13/31 (41%), Gaps = 1/31 (3%)
Query: 225 KLHQGVR-HTCKECSKEFSNEYNLKNHMVLH 254
+ H G + + C C K F + L H +
Sbjct: 1 RTHTGEKPYACSHCDKTFRQKQLLDMHFKRY 31
Score = 25.8 bits (57), Expect = 0.70
Identities = 8/28 (28%), Positives = 13/28 (46%)
Query: 257 RAYVCELCARQFTRVDHFNHHRRLQHDP 284
+ Y C C + F + + H + HDP
Sbjct: 7 KPYACSHCDKTFRQKQLLDMHFKRYHDP 34
Score = 25.8 bits (57), Expect = 0.90
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 205 YSCPSCSKSFNRKDRYRMHLKLHQG 229
Y+C C K+F +K MH K +
Sbjct: 9 YACSHCDKTFRQKQLLDMHFKRYHD 33
>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 29
Score = 28.1 bits (63), Expect = 0.099
Identities = 8/25 (32%), Positives = 12/25 (48%)
Query: 178 HACDQCDRTFSCMPYLRQHQKLHSG 202
AC +C + F +L +H K H
Sbjct: 3 FACPECPKRFMRSDHLSKHIKTHQN 27
Score = 28.1 bits (63), Expect = 0.11
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 124 YPCPECDKTFLSTSGLREHRKVHAGVR 150
+ CPEC K F+ + L +H K H +
Sbjct: 3 FACPECPKRFMRSDHLSKHIKTHQNKK 29
Score = 26.2 bits (58), Expect = 0.56
Identities = 8/23 (34%), Positives = 10/23 (43%)
Query: 232 HTCKECSKEFSNEYNLKNHMVLH 254
C EC K F +L H+ H
Sbjct: 3 FACPECPKRFMRSDHLSKHIKTH 25
Score = 25.4 bits (56), Expect = 1.1
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 205 YSCPSCSKSFNRKDRYRMHLKLHQGVR 231
++CP C K F R D H+K HQ +
Sbjct: 3 FACPECPKRFMRSDHLSKHIKTHQNKK 29
Score = 22.7 bits (49), Expect = 8.5
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 259 YVCELCARQFTRVDHFNHHRR 279
+ C C ++F R DH + H +
Sbjct: 3 FACPECPKRFMRSDHLSKHIK 23
>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 26
Score = 27.7 bits (61), Expect = 0.16
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 205 YSCPSCSKSFNRKDRYRMHLKLHQG 229
+ C C K F+RKD+ + H++ H G
Sbjct: 2 HKCEVCGKCFSRKDKLKTHMRCHTG 26
>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 35
Score = 27.0 bits (60), Expect = 0.31
Identities = 6/25 (24%), Positives = 10/25 (40%)
Query: 178 HACDQCDRTFSCMPYLRQHQKLHSG 202
C C F+ +H K+H+
Sbjct: 8 FVCRICLSAFTTKANCARHLKVHTD 32
Score = 24.7 bits (54), Expect = 1.6
Identities = 6/23 (26%), Positives = 11/23 (47%)
Query: 232 HTCKECSKEFSNEYNLKNHMVLH 254
C+ C F+ + N H+ +H
Sbjct: 8 FVCRICLSAFTTKANCARHLKVH 30
Score = 24.3 bits (53), Expect = 2.6
Identities = 7/23 (30%), Positives = 10/23 (43%)
Query: 124 YPCPECDKTFLSTSGLREHRKVH 146
+ C C F + + H KVH
Sbjct: 8 FVCRICLSAFTTKANCARHLKVH 30
Score = 22.8 bits (49), Expect = 8.7
Identities = 8/23 (34%), Positives = 11/23 (47%)
Query: 205 YSCPSCSKSFNRKDRYRMHLKLH 227
+ C C +F K HLK+H
Sbjct: 8 FVCRICLSAFTTKANCARHLKVH 30
>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 37
Score = 27.0 bits (60), Expect = 0.32
Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 115 HLKTHEGI-IYPCPECDKTFLSTSGLREHRKVHAGV 149
+ GI + CP+CD++F + L HRK H V
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRHMLV 37
Score = 26.2 bits (58), Expect = 0.64
Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 196 HQKLHSGI-TYSCPSCSKSFNRKDRYRMHLKLHQGV 230
+ +GI + CP C +SF+R D +H K H V
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRHMLV 37
Score = 25.8 bits (57), Expect = 0.87
Identities = 8/33 (24%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Query: 223 HLKLHQGVR-HTCKECSKEFSNEYNLKNHMVLH 254
+ G++ C +C + FS +L H H
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRH 34
Score = 25.1 bits (55), Expect = 1.5
Identities = 11/36 (30%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 169 HVASHNGVQ-HACDQCDRTFSCMPYLRQHQKLHSGI 203
G++ C CDR+FS +L H+K H +
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRHMLV 37
>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 26.6 bits (59), Expect = 0.37
Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 3/33 (9%)
Query: 124 YPCPE--CDKTFLSTSGLREHRKVHAGVR-YIC 153
+ CPE C K+F L+EH K+H+ R YIC
Sbjct: 2 FSCPEPACGKSFNFKKHLKEHMKLHSDTRDYIC 34
Score = 25.1 bits (55), Expect = 1.3
Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 3/35 (8%)
Query: 204 TYSC--PSCSKSFNRKDRYRMHLKLHQGVR-HTCK 235
++SC P+C KSFN K + H+KLH R + C+
Sbjct: 1 SFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICE 35
Score = 24.7 bits (54), Expect = 2.1
Identities = 8/23 (34%), Positives = 14/23 (60%)
Query: 180 CDQCDRTFSCMPYLRQHQKLHSG 202
C ++F+ +L++H KLHS
Sbjct: 6 EPACGKSFNFKKHLKEHMKLHSD 28
Score = 22.8 bits (49), Expect = 8.9
Identities = 16/34 (47%), Positives = 21/34 (61%), Gaps = 3/34 (8%)
Query: 232 HTCKE--CSKEFSNEYNLKNHMVLH-DVRAYVCE 262
+C E C K F+ + +LK HM LH D R Y+CE
Sbjct: 2 FSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICE 35
>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing
protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]}
Length = 38
Score = 26.3 bits (58), Expect = 0.48
Identities = 9/36 (25%), Positives = 13/36 (36%), Gaps = 1/36 (2%)
Query: 195 QHQKLHSGI-TYSCPSCSKSFNRKDRYRMHLKLHQG 229
+ + Y C C KSF+ H + H G
Sbjct: 2 RSEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTG 37
Score = 26.3 bits (58), Expect = 0.55
Identities = 9/35 (25%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 169 HVASHNGVQ-HACDQCDRTFSCMPYLRQHQKLHSG 202
+ + CD+C ++FS L +H++ H+G
Sbjct: 3 SEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTG 37
Score = 25.5 bits (56), Expect = 1.1
Identities = 12/35 (34%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 115 HLKTHEGI-IYPCPECDKTFLSTSGLREHRKVHAG 148
Y C EC K+F +S L +HR+ H G
Sbjct: 3 SEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTG 37
Score = 24.7 bits (54), Expect = 2.0
Identities = 10/33 (30%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Query: 223 HLKLHQGVR-HTCKECSKEFSNEYNLKNHMVLH 254
+ R + C EC K FS+ +L H H
Sbjct: 3 SEWQQRERRRYKCDECGKSFSHSSDLSKHRRTH 35
>d2drpa2 g.37.1.1 (A:140-165) Tramtrack protein (two zinc-finger
peptide) {Drosophila melanogaster [TaxId: 7227]}
Length = 26
Score = 26.2 bits (57), Expect = 0.50
Identities = 11/22 (50%), Positives = 13/22 (59%)
Query: 205 YSCPSCSKSFNRKDRYRMHLKL 226
Y CP C K F RKD H+K+
Sbjct: 2 YPCPFCFKEFTRKDNMTAHVKI 23
Score = 23.1 bits (49), Expect = 6.9
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 259 YVCELCARQFTRVDHFNHHRRLQH 282
Y C C ++FTR D+ H ++ H
Sbjct: 2 YPCPFCFKEFTRKDNMTAHVKIIH 25
Score = 22.7 bits (48), Expect = 9.4
Identities = 9/23 (39%), Positives = 12/23 (52%)
Query: 123 IYPCPECDKTFLSTSGLREHRKV 145
+YPCP C K F + H K+
Sbjct: 1 VYPCPFCFKEFTRKDNMTAHVKI 23
>d1ubdc2 g.37.1.1 (C:323-350) Ying-yang 1 (yy1, zinc finger domain)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 28
Score = 25.7 bits (56), Expect = 0.83
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 126 CPECDKTFLSTSGLREHRKVHAG 148
C EC K F+ +S L+ H+ VH G
Sbjct: 5 CAECGKAFVESSKLKRHQLVHTG 27
Score = 24.6 bits (53), Expect = 1.8
Identities = 10/23 (43%), Positives = 12/23 (52%)
Query: 232 HTCKECSKEFSNEYNLKNHMVLH 254
H C EC K F LK H ++H
Sbjct: 3 HVCAECGKAFVESSKLKRHQLVH 25
Score = 23.0 bits (49), Expect = 6.6
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 177 QHACDQCDRTFSCMPYLRQHQKLHSG 202
H C +C + F L++HQ +H+G
Sbjct: 2 VHVCAECGKAFVESSKLKRHQLVHTG 27
>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 31
Score = 25.4 bits (56), Expect = 0.94
Identities = 8/29 (27%), Positives = 14/29 (48%), Gaps = 2/29 (6%)
Query: 124 YPC--PECDKTFLSTSGLREHRKVHAGVR 150
+ C C K F + L+ H++ H G +
Sbjct: 3 FMCTWSYCGKRFTRSDELQRHKRTHTGEK 31
Score = 25.0 bits (55), Expect = 1.3
Identities = 6/21 (28%), Positives = 13/21 (61%)
Query: 182 QCDRTFSCMPYLRQHQKLHSG 202
C + F+ L++H++ H+G
Sbjct: 9 YCGKRFTRSDELQRHKRTHTG 29
Score = 23.4 bits (51), Expect = 4.8
Identities = 7/22 (31%), Positives = 9/22 (40%)
Query: 233 TCKECSKEFSNEYNLKNHMVLH 254
T C K F+ L+ H H
Sbjct: 6 TWSYCGKRFTRSDELQRHKRTH 27
>d2dlqa4 g.37.1.1 (A:8-34) GLI-Krueppel family member HKR3 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 27
Score = 25.0 bits (54), Expect = 1.1
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 126 CPECDKTFLSTSGLREHRKVHAGVR 150
CP C K FLS L+ H + H G +
Sbjct: 3 CPTCHKKFLSKYYLKVHNRKHTGEK 27
>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 30
Score = 25.0 bits (55), Expect = 1.2
Identities = 7/27 (25%), Positives = 12/27 (44%), Gaps = 2/27 (7%)
Query: 124 YPCPE--CDKTFLSTSGLREHRKVHAG 148
+ C C K++ L+ H + H G
Sbjct: 3 HKCTFEGCRKSYSRLENLKTHLRSHTG 29
Score = 25.0 bits (55), Expect = 1.5
Identities = 8/27 (29%), Positives = 15/27 (55%), Gaps = 2/27 (7%)
Query: 178 HACDQ--CDRTFSCMPYLRQHQKLHSG 202
H C C +++S + L+ H + H+G
Sbjct: 3 HKCTFEGCRKSYSRLENLKTHLRSHTG 29
Score = 22.7 bits (49), Expect = 8.6
Identities = 9/27 (33%), Positives = 15/27 (55%), Gaps = 2/27 (7%)
Query: 205 YSC--PSCSKSFNRKDRYRMHLKLHQG 229
+ C C KS++R + + HL+ H G
Sbjct: 3 HKCTFEGCRKSYSRLENLKTHLRSHTG 29
>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 29
Score = 24.6 bits (54), Expect = 1.6
Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
Query: 178 HACDQ--CDRTFSCMPYLRQHQKLHSG 202
+AC CDR FS L +H ++H+G
Sbjct: 3 YACPVESCDRRFSRSADLTRHIRIHTG 29
Score = 24.6 bits (54), Expect = 2.1
Identities = 10/27 (37%), Positives = 15/27 (55%), Gaps = 2/27 (7%)
Query: 124 YPCPE--CDKTFLSTSGLREHRKVHAG 148
Y CP CD+ F ++ L H ++H G
Sbjct: 3 YACPVESCDRRFSRSADLTRHIRIHTG 29
>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 37
Score = 24.7 bits (54), Expect = 1.8
Identities = 9/24 (37%), Positives = 10/24 (41%)
Query: 123 IYPCPECDKTFLSTSGLREHRKVH 146
Y C C + F S L H VH
Sbjct: 5 SYTCSFCKREFRSAQALGGHMNVH 28
Score = 24.7 bits (54), Expect = 2.1
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 232 HTCKECSKEFSNEYNLKNHMVLH 254
+TC C +EF + L HM +H
Sbjct: 6 YTCSFCKREFRSAQALGGHMNVH 28
>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 47
Score = 24.9 bits (54), Expect = 2.1
Identities = 6/26 (23%), Positives = 10/26 (38%)
Query: 177 QHACDQCDRTFSCMPYLRQHQKLHSG 202
+ C +TF +R H + H
Sbjct: 20 ECLFPGCTKTFKRRYNIRSHIQTHLE 45
>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 24.6 bits (54), Expect = 2.3
Identities = 5/23 (21%), Positives = 10/23 (43%)
Query: 232 HTCKECSKEFSNEYNLKNHMVLH 254
+ C C F+ +K H++
Sbjct: 9 YECYICHARFTQSGTMKMHILQK 31
Score = 24.2 bits (53), Expect = 2.7
Identities = 4/25 (16%), Positives = 8/25 (32%)
Query: 178 HACDQCDRTFSCMPYLRQHQKLHSG 202
+ C C F+ ++ H
Sbjct: 9 YECYICHARFTQSGTMKMHILQKHT 33
Score = 24.2 bits (53), Expect = 3.0
Identities = 5/23 (21%), Positives = 8/23 (34%)
Query: 124 YPCPECDKTFLSTSGLREHRKVH 146
Y C C F + ++ H
Sbjct: 9 YECYICHARFTQSGTMKMHILQK 31
Score = 23.4 bits (51), Expect = 4.8
Identities = 8/29 (27%), Positives = 12/29 (41%), Gaps = 4/29 (13%)
Query: 205 YSCPSCSKSFNRKDRYRMHLKLHQGVRHT 233
Y C C F + +K+H +HT
Sbjct: 9 YECYICHARFTQSG----TMKMHILQKHT 33
>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 28
Score = 24.4 bits (53), Expect = 2.4
Identities = 8/24 (33%), Positives = 13/24 (54%)
Query: 205 YSCPSCSKSFNRKDRYRMHLKLHQ 228
++C C + F R D + H K+H
Sbjct: 4 FACDICGRKFARSDERKRHTKIHL 27
Score = 23.6 bits (51), Expect = 4.6
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 179 ACDQCDRTFSCMPYLRQHQKLH 200
ACD C R F+ ++H K+H
Sbjct: 5 ACDICGRKFARSDERKRHTKIH 26
Score = 23.2 bits (50), Expect = 5.7
Identities = 7/24 (29%), Positives = 14/24 (58%)
Query: 257 RAYVCELCARQFTRVDHFNHHRRL 280
+ + C++C R+F R D H ++
Sbjct: 2 KPFACDICGRKFARSDERKRHTKI 25
>d1bboa1 g.37.1.1 (A:1-28) Enhancer binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 28
Score = 24.1 bits (52), Expect = 2.5
Identities = 7/27 (25%), Positives = 14/27 (51%)
Query: 32 RHPCPQCSRDFATVKILKTHLKTHEGI 58
++ C +C +LK H++TH +
Sbjct: 1 KYICEECGIRAKKPSMLKKHIRTHTDV 27
Score = 24.1 bits (52), Expect = 2.5
Identities = 7/27 (25%), Positives = 14/27 (51%)
Query: 96 RHPCPQCSRDFATVKILKTHLKTHEGI 122
++ C +C +LK H++TH +
Sbjct: 1 KYICEECGIRAKKPSMLKKHIRTHTDV 27
Score = 22.5 bits (48), Expect = 10.0
Identities = 8/28 (28%), Positives = 14/28 (50%)
Query: 150 RYICHACPREFSSEATMKAHVASHNGVQ 177
+YIC C + +K H+ +H V+
Sbjct: 1 KYICEECGIRAKKPSMLKKHIRTHTDVR 28
>d1znfa_ g.37.1.1 (A:) XFIN, third domain {Xenopus laevis [TaxId:
8355]}
Length = 26
Score = 23.9 bits (51), Expect = 2.8
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 124 YPCPECDKTFLSTSGLREHRKVH 146
Y C C+++F+ S L H++VH
Sbjct: 1 YKCGLCERSFVEKSALSRHQRVH 23
>d2j7ja2 g.37.1.1 (A:29-57) Transcription factor IIIA, TFIIIA
{Xenopus laevis [TaxId: 8355]}
Length = 29
Score = 23.9 bits (51), Expect = 3.0
Identities = 14/26 (53%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
Query: 124 YPCPE--CDKTFLSTSGLREHRKVHA 147
Y CP CDK F S L+ H KVHA
Sbjct: 4 YECPHEGCDKRFSLPSRLKRHEKVHA 29
>d1sqia2 d.32.1.3 (A:157-366) 4-hydroxyphenylpyruvate dioxygenase,
HppD {Human (Homo sapiens) [TaxId: 9606]}
Length = 210
Score = 26.5 bits (58), Expect = 3.4
Identities = 9/62 (14%), Positives = 22/62 (35%), Gaps = 5/62 (8%)
Query: 175 GVQHACDQCDRTFSCMPYLRQHQKLHSGITYSCPSCSKSFNRKDRYRMHLKLHQGVRHTC 234
GVQH + + + + +LR+ G+ + S ++ + +
Sbjct: 107 GVQHIALRTEDIITTIRHLRE-----RGMEFLAVPSSYYRLLRENLKTSKIQVKENMDVL 161
Query: 235 KE 236
+E
Sbjct: 162 EE 163
>d2akla2 g.41.3.5 (A:3-40) Hypothetical protein PA0128, N-terminal
domain {Pseudomonas aeruginosa [TaxId: 287]}
Length = 38
Score = 23.9 bits (52), Expect = 3.6
Identities = 13/39 (33%), Positives = 18/39 (46%), Gaps = 13/39 (33%)
Query: 27 STTPTRHPCPQCSRDFATVKILKTHLKTHEGIIYPCPEC 65
ST P PCPQC+ ++ +G + CPEC
Sbjct: 1 STLP---PCPQCNSEYTY----------EDGALLVCPEC 26
Score = 23.9 bits (52), Expect = 4.0
Identities = 10/32 (31%), Positives = 15/32 (46%), Gaps = 10/32 (31%)
Query: 98 PCPQCSRDFATVKILKTHLKTHEGIIYPCPEC 129
PCPQC+ ++ +G + CPEC
Sbjct: 5 PCPQCNSEYTY----------EDGALLVCPEC 26
>d2adra2 g.37.1.1 (A:131-161) ADR1 {Synthetic, based on
Saccharomyces cerevisiae sequence}
Length = 31
Score = 23.6 bits (51), Expect = 3.9
Identities = 10/26 (38%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Query: 205 YSCPSCSKSFNRKDRYRMHL-KLHQG 229
Y C C+++F R+D H K+H G
Sbjct: 2 YPCGLCNRAFTRRDLLIRHAQKIHSG 27
>d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 35
Score = 23.9 bits (51), Expect = 4.6
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 177 QHACDQCDRTFSCMPYLRQHQKLHSG 202
Q AC+ C + F + +L +H+ HSG
Sbjct: 5 QVACEICGKIFRDVYHLNRHKLSHSG 30
Score = 23.1 bits (49), Expect = 7.5
Identities = 8/24 (33%), Positives = 13/24 (54%)
Query: 231 RHTCKECSKEFSNEYNLKNHMVLH 254
+ C+ C K F + Y+L H + H
Sbjct: 5 QVACEICGKIFRDVYHLNRHKLSH 28
>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger domain)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 30
Score = 23.5 bits (51), Expect = 4.8
Identities = 9/27 (33%), Positives = 12/27 (44%), Gaps = 2/27 (7%)
Query: 124 YPCPE--CDKTFLSTSGLREHRKVHAG 148
+ C C K F LR H ++H G
Sbjct: 3 FQCTFEGCGKRFSLDFNLRTHVRIHTG 29
Score = 23.1 bits (50), Expect = 6.5
Identities = 9/27 (33%), Positives = 13/27 (48%), Gaps = 2/27 (7%)
Query: 178 HACDQ--CDRTFSCMPYLRQHQKLHSG 202
C C + FS LR H ++H+G
Sbjct: 3 FQCTFEGCGKRFSLDFNLRTHVRIHTG 29
>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 32
Score = 23.4 bits (51), Expect = 5.6
Identities = 9/27 (33%), Positives = 14/27 (51%), Gaps = 2/27 (7%)
Query: 178 HACDQ--CDRTFSCMPYLRQHQKLHSG 202
++CD CD+ F L +H+K H
Sbjct: 4 YSCDHPGCDKAFVRNHDLIRHKKSHQE 30
Score = 22.7 bits (49), Expect = 9.5
Identities = 10/27 (37%), Positives = 12/27 (44%), Gaps = 2/27 (7%)
Query: 124 YPCPE--CDKTFLSTSGLREHRKVHAG 148
Y C CDK F+ L H+K H
Sbjct: 4 YSCDHPGCDKAFVRNHDLIRHKKSHQE 30
>d1y0jb1 g.37.1.2 (B:1-36) U-shaped transcription factor, different
fingers {Fruit fly (Drosophila melanogaster) [TaxId:
7227]}
Length = 36
Score = 23.5 bits (50), Expect = 6.1
Identities = 9/20 (45%), Positives = 14/20 (70%)
Query: 150 RYICHACPREFSSEATMKAH 169
R++C C FSS +T++AH
Sbjct: 8 RFMCLPCGIAFSSPSTLEAH 27
>d1weva_ g.50.1.2 (A:) PHD finger protein 22 {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 88
Score = 24.4 bits (52), Expect = 8.2
Identities = 7/41 (17%), Positives = 15/41 (36%), Gaps = 3/41 (7%)
Query: 180 CDQCDRTF--SCM-PYLRQHQKLHSGITYSCPSCSKSFNRK 217
C +C + C P + + + + C C++ R
Sbjct: 36 CQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMKRM 76
>d1fy7a_ d.108.1.1 (A:) Histone acetyltransferase ESA1 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 273
Score = 25.5 bits (56), Expect = 8.8
Identities = 3/21 (14%), Positives = 9/21 (42%)
Query: 259 YVCELCARQFTRVDHFNHHRR 279
Y+ + + F + +R+
Sbjct: 35 YIDDFTLQYFGSKKQYERYRK 55
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.132 0.431
Gapped
Lambda K H
0.267 0.0478 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,104,062
Number of extensions: 51658
Number of successful extensions: 589
Number of sequences better than 10.0: 1
Number of HSP's gapped: 574
Number of HSP's successfully gapped: 267
Length of query: 294
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 209
Effective length of database: 1,240,546
Effective search space: 259274114
Effective search space used: 259274114
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 52 (24.4 bits)