BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6547
(266 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2BYJ|A Chain A, Ornithine Aminotransferase Mutant Y85i
pdb|2BYJ|B Chain B, Ornithine Aminotransferase Mutant Y85i
pdb|2BYJ|C Chain C, Ornithine Aminotransferase Mutant Y85i
Length = 439
Score = 295 bits (754), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 143/256 (55%), Positives = 189/256 (73%), Gaps = 8/256 (3%)
Query: 4 TTDPTSYNEFGPHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYL 63
+TDPTSY+ FGP MPG++IIPYND+ ALE L+ +PN+ AFMVEPIQGEAG VVPD GYL
Sbjct: 188 STDPTSYDGFGPFMPGFDIIPYNDLPALERALQ-DPNVAAFMVEPIQGEAGVVVPDPGYL 246
Query: 64 KKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLA 123
VR LC+++ VLFIADE+QTGL RTG+ LA+ YE+VRPDIV+LGKALSGGLYP+SAVL
Sbjct: 247 MGVRELCTRHQVLFIADEIQTGLARTGRWLAVDYENVRPDIVLLGKALSGGLYPVSAVLC 306
Query: 124 DDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSS-PAN 182
DD++M T+ PG HGSTYGGNPL C++A+ AL+V+ EEN+ ENA K+G I R+EL P++
Sbjct: 307 DDDIMLTIKPGEHGSTYGGNPLGCRVAIAALEVLEEENLAENADKLGIILRNELMKLPSD 366
Query: 183 XXXXXXXXXXXXXXXXINTLILSVSAILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNI 242
+N +++ + + + VC++++D GL+ KP +IIR +P L I
Sbjct: 367 ------VVTAVRGKGLLNAIVIKETKDWDAWKVCLRLRDNGLLAKPTHGDIIRFAPPLVI 420
Query: 243 TEQELREGLDIIINTI 258
E ELRE ++II TI
Sbjct: 421 KEDELRESIEIINKTI 436
>pdb|1OAT|A Chain A, Ornithine Aminotransferase
pdb|1OAT|B Chain B, Ornithine Aminotransferase
pdb|1OAT|C Chain C, Ornithine Aminotransferase
pdb|2OAT|A Chain A, Ornithine Aminotransferase Complexed With
5-Fluoromethylornithine
pdb|2OAT|B Chain B, Ornithine Aminotransferase Complexed With
5-Fluoromethylornithine
pdb|2OAT|C Chain C, Ornithine Aminotransferase Complexed With
5-Fluoromethylornithine
Length = 439
Score = 295 bits (754), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 143/256 (55%), Positives = 189/256 (73%), Gaps = 8/256 (3%)
Query: 4 TTDPTSYNEFGPHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYL 63
+TDPTSY+ FGP MPG++IIPYND+ ALE L+ +PN+ AFMVEPIQGEAG VVPD GYL
Sbjct: 188 STDPTSYDGFGPFMPGFDIIPYNDLPALERALQ-DPNVAAFMVEPIQGEAGVVVPDPGYL 246
Query: 64 KKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLA 123
VR LC+++ VLFIADE+QTGL RTG+ LA+ YE+VRPDIV+LGKALSGGLYP+SAVL
Sbjct: 247 MGVRELCTRHQVLFIADEIQTGLARTGRWLAVDYENVRPDIVLLGKALSGGLYPVSAVLC 306
Query: 124 DDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSS-PAN 182
DD++M T+ PG HGSTYGGNPL C++A+ AL+V+ EEN+ ENA K+G I R+EL P++
Sbjct: 307 DDDIMLTIKPGEHGSTYGGNPLGCRVAIAALEVLEEENLAENADKLGIILRNELMKLPSD 366
Query: 183 XXXXXXXXXXXXXXXXINTLILSVSAILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNI 242
+N +++ + + + VC++++D GL+ KP +IIR +P L I
Sbjct: 367 ------VVTAVRGKGLLNAIVIKETKDWDAWKVCLRLRDNGLLAKPTHGDIIRFAPPLVI 420
Query: 243 TEQELREGLDIIINTI 258
E ELRE ++II TI
Sbjct: 421 KEDELRESIEIINKTI 436
>pdb|2CAN|A Chain A, Human Ornithine Aminotransferase Complexed With L-Canaline
pdb|2CAN|B Chain B, Human Ornithine Aminotransferase Complexed With L-Canaline
pdb|2CAN|C Chain C, Human Ornithine Aminotransferase Complexed With L-Canaline
pdb|1GBN|A Chain A, Human Ornithine Aminotransferase Complexed With The
Neurotoxin Gabaculine
pdb|1GBN|B Chain B, Human Ornithine Aminotransferase Complexed With The
Neurotoxin Gabaculine
pdb|1GBN|C Chain C, Human Ornithine Aminotransferase Complexed With The
Neurotoxin Gabaculine
Length = 402
Score = 293 bits (751), Expect = 5e-80, Method: Compositional matrix adjust.
Identities = 143/256 (55%), Positives = 189/256 (73%), Gaps = 8/256 (3%)
Query: 4 TTDPTSYNEFGPHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYL 63
+TDPTSY+ FGP MPG++IIPYND+ ALE L+ +PN+ AFMVEPIQGEAG VVPD GYL
Sbjct: 151 STDPTSYDGFGPFMPGFDIIPYNDLPALERALQ-DPNVAAFMVEPIQGEAGVVVPDPGYL 209
Query: 64 KKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLA 123
VR LC+++ VLFIADE+QTGL RTG+ LA+ YE+VRPDIV+LGKALSGGLYP+SAVL
Sbjct: 210 MGVRELCTRHQVLFIADEIQTGLARTGRWLAVDYENVRPDIVLLGKALSGGLYPVSAVLC 269
Query: 124 DDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSS-PAN 182
DD++M T+ PG HGSTYGGNPL C++A+ AL+V+ EEN+ ENA K+G I R+EL P++
Sbjct: 270 DDDIMLTIKPGEHGSTYGGNPLGCRVAIAALEVLEEENLAENADKLGIILRNELMKLPSD 329
Query: 183 XXXXXXXXXXXXXXXXINTLILSVSAILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNI 242
+N +++ + + + VC++++D GL+ KP +IIR +P L I
Sbjct: 330 ------VVTAVRGKGLLNAIVIKETKDWDAWKVCLRLRDNGLLAKPTHGDIIRFAPPLVI 383
Query: 243 TEQELREGLDIIINTI 258
E ELRE ++II TI
Sbjct: 384 KEDELRESIEIINKTI 399
>pdb|2BYL|A Chain A, Structure Of Ornithine Aminotransferase Triple Mutant Y85i
Y55a G320f
pdb|2BYL|B Chain B, Structure Of Ornithine Aminotransferase Triple Mutant Y85i
Y55a G320f
pdb|2BYL|C Chain C, Structure Of Ornithine Aminotransferase Triple Mutant Y85i
Y55a G320f
Length = 439
Score = 291 bits (746), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 142/256 (55%), Positives = 188/256 (73%), Gaps = 8/256 (3%)
Query: 4 TTDPTSYNEFGPHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYL 63
+TDPTSY+ FGP MPG++IIPYND+ ALE L+ +PN+ AFMVEPIQGEAG VVPD GYL
Sbjct: 188 STDPTSYDGFGPFMPGFDIIPYNDLPALERALQ-DPNVAAFMVEPIQGEAGVVVPDPGYL 246
Query: 64 KKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLA 123
VR LC+++ VLFIADE+QTGL RTG+ LA+ YE+VRPDIV+LGKALSGGLYP+SAVL
Sbjct: 247 MGVRELCTRHQVLFIADEIQTGLARTGRWLAVDYENVRPDIVLLGKALSGGLYPVSAVLC 306
Query: 124 DDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSS-PAN 182
DD++M T+ PG H STYGGNPL C++A+ AL+V+ EEN+ ENA K+G I R+EL P++
Sbjct: 307 DDDIMLTIKPGEHFSTYGGNPLGCRVAIAALEVLEEENLAENADKLGIILRNELMKLPSD 366
Query: 183 XXXXXXXXXXXXXXXXINTLILSVSAILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNI 242
+N +++ + + + VC++++D GL+ KP +IIR +P L I
Sbjct: 367 ------VVTAVRGKGLLNAIVIKETKDWDAWKVCLRLRDNGLLAKPTHGDIIRFAPPLVI 420
Query: 243 TEQELREGLDIIINTI 258
E ELRE ++II TI
Sbjct: 421 KEDELRESIEIINKTI 436
>pdb|3LG0|A Chain A, Structure Of Plasmodium Falciparum Ornithine
Delta-Aminotransferase
pdb|3LG0|B Chain B, Structure Of Plasmodium Falciparum Ornithine
Delta-Aminotransferase
pdb|3LG0|C Chain C, Structure Of Plasmodium Falciparum Ornithine
Delta-Aminotransferase
pdb|3LG0|D Chain D, Structure Of Plasmodium Falciparum Ornithine
Delta-Aminotransferase
pdb|3NTJ|A Chain A, Redox Regulation Of Plasmodium Falciparum Ornithine Delta-
Aminotransferase
pdb|3NTJ|B Chain B, Redox Regulation Of Plasmodium Falciparum Ornithine Delta-
Aminotransferase
pdb|3NTJ|C Chain C, Redox Regulation Of Plasmodium Falciparum Ornithine Delta-
Aminotransferase
pdb|3NTJ|D Chain D, Redox Regulation Of Plasmodium Falciparum Ornithine Delta-
Aminotransferase
Length = 422
Score = 251 bits (641), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 121/255 (47%), Positives = 171/255 (67%), Gaps = 5/255 (1%)
Query: 4 TTDPTSYNEFGPHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYL 63
+TD N FGP +P + +PY+D++ALE +L+ +PN+CAF+VEP+QGEAG +VP D Y
Sbjct: 158 STDKKCKNNFGPFVPNFLKVPYDDLEALEKELQ-DPNVCAFIVEPVQGEAGVIVPSDSYF 216
Query: 64 KKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLA 123
V +LC +YNVLF+ADEVQTGLGRTGKLL H+ V+PD+++LGKALSGG YPISA+LA
Sbjct: 217 PGVASLCKKYNVLFVADEVQTGLGRTGKLLCTHHYGVKPDVILLGKALSGGHYPISAILA 276
Query: 124 DDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSSPANX 183
+D+VM L PG HGSTYGGNPLA + + AL V++ E + ENA K+G F L
Sbjct: 277 NDDVMLVLKPGEHGSTYGGNPLAAAICVEALKVLINEKLCENADKLGAPFLQNLKEQLKD 336
Query: 184 XXXXXXXXXXXXXXXINTLILSVSAILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNIT 243
I + ++ V+D+C+K K+ GL+T+ + + +RL+P L IT
Sbjct: 337 SKVVREVRGKGLLCAIEF----KNDLVNVWDICLKFKENGLITRSVHDKTVRLTPPLCIT 392
Query: 244 EQELREGLDIIINTI 258
+++L E +II+ T+
Sbjct: 393 KEQLDECTEIIVKTV 407
>pdb|1Z7D|A Chain A, Ornithine Aminotransferase Py00104 From Plasmodium Yoelii
pdb|1Z7D|B Chain B, Ornithine Aminotransferase Py00104 From Plasmodium Yoelii
pdb|1Z7D|C Chain C, Ornithine Aminotransferase Py00104 From Plasmodium Yoelii
pdb|1Z7D|D Chain D, Ornithine Aminotransferase Py00104 From Plasmodium Yoelii
pdb|1Z7D|E Chain E, Ornithine Aminotransferase Py00104 From Plasmodium Yoelii
pdb|1Z7D|F Chain F, Ornithine Aminotransferase Py00104 From Plasmodium Yoelii
Length = 433
Score = 248 bits (634), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 121/255 (47%), Positives = 174/255 (68%), Gaps = 5/255 (1%)
Query: 4 TTDPTSYNEFGPHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYL 63
+T + FGP P ++ +PY+D++ALE +LK +PN+CAF+VEPIQGEAG +VP D YL
Sbjct: 177 STTKKCTSNFGPFAPQFSKVPYDDLEALEEELK-DPNVCAFIVEPIQGEAGVIVPSDNYL 235
Query: 64 KKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLA 123
+ V +C +YNVLF+ADEVQTGLGRTGKLL +H+ +V+PD+++LGKALSGG YPISAVLA
Sbjct: 236 QGVYDICKKYNVLFVADEVQTGLGRTGKLLCVHHYNVKPDVILLGKALSGGHYPISAVLA 295
Query: 124 DDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSSPANX 183
+D++M + PG HGSTYGGNPLA + + AL+V++ E + ENA K+G F L
Sbjct: 296 NDDIMLVIKPGEHGSTYGGNPLAASICVEALNVLINEKLCENAEKLGGPFLENLKRELKD 355
Query: 184 XXXXXXXXXXXXXXXINTLILSVSAILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNIT 243
I + ++ V D+C+K+K+ GL+T+ + + IRL+P L IT
Sbjct: 356 SKIVRDVRGKGLLCAIEF----KNELVNVLDICLKLKENGLITRDVHDKTIRLTPPLCIT 411
Query: 244 EQELREGLDIIINTI 258
+++L E +II+ T+
Sbjct: 412 KEQLDECTEIIVKTV 426
>pdb|3RUY|A Chain A, Crystal Structure Of The Ornithine-Oxo Acid Transaminase
Rocd From Bacillus Anthracis
pdb|3RUY|B Chain B, Crystal Structure Of The Ornithine-Oxo Acid Transaminase
Rocd From Bacillus Anthracis
Length = 392
Score = 200 bits (509), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 100/242 (41%), Positives = 149/242 (61%), Gaps = 11/242 (4%)
Query: 13 FGPHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQ 72
FGP +PG +IPY D++AL+A + PN AF++EPIQGEAG +P G+LK+ +C +
Sbjct: 157 FGPMLPGIIVIPYGDLEALKAAI--TPNTAAFILEPIQGEAGINIPPAGFLKEALEVCKK 214
Query: 73 YNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLV 132
NVLF+ADE+QTGLGRTGK+ A +++V PD+ ILG AL GG++PIS A+ +++G
Sbjct: 215 ENVLFVADEIQTGLGRTGKVFACDWDNVTPDMYILGXALGGGVFPISCAAANRDILGVFE 274
Query: 133 PGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSSPANXXXXXXXXXX 192
PG+HGST+GGNPLAC +++ AL+V+ EE + E + ++GE +L N
Sbjct: 275 PGSHGSTFGGNPLACAVSIAALEVLEEEKLTERSLQLGEKLVGQLKEIDNPMITEVRG-- 332
Query: 193 XXXXXXINTLILSVSAILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLD 252
L + + C ++K AGL+ K N+IR++P L I+E++L
Sbjct: 333 -------KGLFIGIELNEPARPYCEQLKAAGLLCKETHENVIRIAPPLVISEEDLEWAFQ 385
Query: 253 II 254
I
Sbjct: 386 KI 387
>pdb|4ADB|A Chain A, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADB|B Chain B, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADB|C Chain C, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADB|D Chain D, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADC|A Chain A, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADC|B Chain B, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADC|C Chain C, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADC|D Chain D, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADD|A Chain A, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADD|B Chain B, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADD|C Chain C, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADD|D Chain D, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADE|A Chain A, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADE|B Chain B, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
Length = 406
Score = 143 bits (360), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 84/253 (33%), Positives = 133/253 (52%), Gaps = 18/253 (7%)
Query: 6 DPTSYNEFGPHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKK 65
P +F P YND+++ A + + + CA +VEPIQGE G V + +L+
Sbjct: 151 QPAYSQDFAPLPADIRHAAYNDINSASALI--DDSTCAVIVEPIQGEGGVVPASNAFLQG 208
Query: 66 VRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADD 125
+R LC+++N L I DEVQTG+GRTG+L A + V PD++ KAL GG +P+ A+LA +
Sbjct: 209 LRELCNRHNALLIFDEVQTGVGRTGELYAYMHYGVTPDLLTTAKALGGG-FPVGALLATE 267
Query: 126 EVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSSPANXXX 185
E + GTHG+TYGGNPLA +A L++I M+ + + F L++
Sbjct: 268 ECARVMTVGTHGTTYGGNPLASAVAGKVLELINTPEMLNGVKQRHDWFVERLNT------ 321
Query: 186 XXXXXXXXXXXXXINTLILSVSAIL------EVYDVCIKMKDAGLVTKPISNNIIRLSPA 239
+ L L + +L + + + AG++ N++R +PA
Sbjct: 322 ---INHRYGLFSEVRGLGLLIGCVLNADYAGQAKQISQEAAKAGVMVLIAGGNVVRFAPA 378
Query: 240 LNITEQELREGLD 252
LN++E+E+ GLD
Sbjct: 379 LNVSEEEVTTGLD 391
>pdb|2EH6|A Chain A, Crystal Structure Of Acetylornithine Aminotransferase From
Aquifex Aeolicus Vf5
pdb|2EH6|B Chain B, Crystal Structure Of Acetylornithine Aminotransferase From
Aquifex Aeolicus Vf5
Length = 375
Score = 140 bits (354), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 76/251 (30%), Positives = 131/251 (52%), Gaps = 17/251 (6%)
Query: 4 TTDPTSYNEFGPHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYL 63
T P + F P +PG++ ND+D++ L + ++E IQGE G + +L
Sbjct: 138 TGQPKFHKGFEPLVPGFSYAKLNDIDSVYKLL--DEETAGIIIEVIQGEGGVNEASEDFL 195
Query: 64 KKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLA 123
K++ +C + +VL I DEVQTG+GRTG+ A + +++PD++ L K L GG+ PI A+LA
Sbjct: 196 SKLQEICKEKDVLLIIDEVQTGIGRTGEFYAYQHFNLKPDVIALAKGLGGGV-PIGAILA 254
Query: 124 DDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSSPANX 183
+EV + PG+HGST+GGNPLAC+ +D + E ++ + ++G F+ +L
Sbjct: 255 REEVAQSFTPGSHGSTFGGNPLACRAGTVVVDEV--EKLLPHVREVGNYFKEKLKELGKG 312
Query: 184 XXXXXXXXXXXXXXXINTLILSVSAILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNIT 243
L+L + E D +K + GL+ + ++R P L I
Sbjct: 313 KVKG------------RGLMLGLELERECKDYVLKALEKGLLINCTAGKVLRFLPPLIIQ 360
Query: 244 EQELREGLDII 254
++ + + ++
Sbjct: 361 KEHIDRAISVL 371
>pdb|2PB0|A Chain A, Structure Of Biosynthetic N-Acetylornithine
Aminotransferase From Salmonella Typhimurium: Studies On
Substrate Specificity And Inhibitor Binding
pdb|2PB0|B Chain B, Structure Of Biosynthetic N-Acetylornithine
Aminotransferase From Salmonella Typhimurium: Studies On
Substrate Specificity And Inhibitor Binding
pdb|2PB2|A Chain A, Structure Of Biosynthetic N-Acetylornithine
Aminotransferase From Salmonella Typhimurium: Studies On
Substrate Specificity And Inhibitor Binding
pdb|2PB2|B Chain B, Structure Of Biosynthetic N-Acetylornithine
Aminotransferase From Salmonella Typhimurium: Studies On
Substrate Specificity And Inhibitor Binding
Length = 420
Score = 139 bits (350), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 83/264 (31%), Positives = 131/264 (49%), Gaps = 18/264 (6%)
Query: 6 DPTSYNEFGPHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKK 65
P + FGP +P+ND+ A++A + + + CA +VEPIQGE G +LK
Sbjct: 169 QPKYSDGFGPKPADIIHVPFNDLHAVKAVM--DDHTCAVVVEPIQGEGGVQAATPEFLKG 226
Query: 66 VRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADD 125
+R LC ++ L + DEVQ G+GRTG L A + V PDI+ KAL GG +P+SA+L
Sbjct: 227 LRDLCDEHQALLVFDEVQCGMGRTGDLFAYMHYGVTPDILTSAKALGGG-FPVSAMLTTQ 285
Query: 126 EVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSSPANXXX 185
E+ G+HGSTYGGNPLAC +A A D+I +++ + + F L +
Sbjct: 286 EIASAFHVGSHGSTYGGNPLACAVAGAAFDIINTPEVLQGIHTKRQQFVQHLQA------ 339
Query: 186 XXXXXXXXXXXXXINTLILSVSAILE------VYDVCIKMKDAGLVTKPISNNIIRLSPA 239
I + L + A L+ D +AG++ +++R +P+
Sbjct: 340 ---IDEQFDIFSDIRGMGLLIGAELKPKYKGRARDFLYAGAEAGVMVLNAGADVMRFAPS 396
Query: 240 LNITEQELREGLDIIINTINTMAA 263
L + E ++ EG+ + + A
Sbjct: 397 LVVEEADIHEGMQRFAQAVGKVVA 420
>pdb|2E54|A Chain A, Crystal Structure Of Acetylornithine Aminotransferase From
Thermotoga Maritima
Length = 385
Score = 138 bits (347), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 84/260 (32%), Positives = 129/260 (49%), Gaps = 17/260 (6%)
Query: 4 TTDPTSYNEFGPHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYL 63
T P F P +PG+ +N+V+ L K+ + ++CA +EPIQGE+G V +L
Sbjct: 137 TGQPKYQKPFEPLVPGFEYFEFNNVEDLRRKM--SEDVCAVFLEPIQGESGIVPATKEFL 194
Query: 64 KKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLA 123
++ R LC +Y+ L + DEVQ G+GRTGKL A V PD++ K L GG+ PI AV+
Sbjct: 195 EEARKLCDEYDALLVFDEVQCGMGRTGKLFAYQKYGVVPDVLTTAKGLGGGV-PIGAVIV 253
Query: 124 DDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSSPANX 183
+E L PG HG+T+GGNPLAC+ +T + + +E +E + G +L
Sbjct: 254 -NERANVLEPGDHGTTFGGNPLACRAGVTVIKELTKEGFLEEVEEKGNYLMKKLQEMKEE 312
Query: 184 XXXXXXXXXXXXXXXINTLILSVSAILEV--YDVCIKMKDAGLVTKPISNNIIRLSPALN 241
L++ + EV +V K + L+ P NN IR P L
Sbjct: 313 YDVVADVRGMG-------LMIGIQFREEVSNREVATKCFENKLLVVPAGNNTIRFLPPLT 365
Query: 242 ITEQELREGLDIIINTINTM 261
+ E +D+ + T+ +
Sbjct: 366 VEYGE----IDLAVETLKKV 381
>pdb|2ORD|A Chain A, Crystal Structure Of Acetylornithine Aminotransferase (Ec
2.6.1.11) (Acoat) (Tm1785) From Thermotoga Maritima At
1.40 A Resolution
pdb|2ORD|B Chain B, Crystal Structure Of Acetylornithine Aminotransferase (Ec
2.6.1.11) (Acoat) (Tm1785) From Thermotoga Maritima At
1.40 A Resolution
Length = 397
Score = 137 bits (344), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 85/263 (32%), Positives = 129/263 (49%), Gaps = 17/263 (6%)
Query: 1 MLITTDPTSYNEFGPHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDD 60
+ T P F P +PG+ +N+V+ L + K + ++CA +EPIQGE+G V
Sbjct: 146 LTATGQPKYQKPFEPLVPGFEYFEFNNVEDL--RRKXSEDVCAVFLEPIQGESGIVPATK 203
Query: 61 GYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISA 120
+L++ R LC +Y+ L + DEVQ G GRTGKL A V PD++ K L GG+ PI A
Sbjct: 204 EFLEEARKLCDEYDALLVFDEVQCGXGRTGKLFAYQKYGVVPDVLTTAKGLGGGV-PIGA 262
Query: 121 VLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSSP 180
V+ +E L PG HG+T+GGNPLAC+ +T + + +E +E + G +L
Sbjct: 263 VIV-NERANVLEPGDHGTTFGGNPLACRAGVTVIKELTKEGFLEEVEEKGNYLXKKLQEX 321
Query: 181 ANXXXXXXXXXXXXXXXXINTLILSVSAILEV--YDVCIKMKDAGLVTKPISNNIIRLSP 238
L + + EV +V K + L+ P NN IR P
Sbjct: 322 KEEYDVVADVRGXG-------LXIGIQFREEVSNREVATKCFENKLLVVPAGNNTIRFLP 374
Query: 239 ALNITEQELREGLDIIINTINTM 261
L + E +D+ + T+ +
Sbjct: 375 PLTVEYGE----IDLAVETLKKV 393
>pdb|2EO5|A Chain A, Crystal Structure Of 4-Aminobutyrate Aminotransferase From
Sulfolobus Tokodaii Strain7
Length = 419
Score = 124 bits (310), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 71/227 (31%), Positives = 119/227 (52%), Gaps = 27/227 (11%)
Query: 41 ICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDV 100
+ EPIQGE G V+P + +++ L +Y +L + DEVQ GLGRTGKL AI +
Sbjct: 213 VAGIFFEPIQGEGGYVIPPKNFFAELQKLAKKYGILLVDDEVQMGLGRTGKLFAIENFNT 272
Query: 101 RPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEE 160
PD++ L KAL GG+ PI A + ++ PG H +T+GGN LAC + +D++ +
Sbjct: 273 VPDVITLAKALGGGIMPIGATIFRKDL--DFKPGMHSNTFGGNALACAIGSKVIDIV--K 328
Query: 161 NMIENAYKMGEIFRSELSSPANXXXXXXXXXXXXXXXXINTLILSVSAILEVYDVCIKMK 220
+++ + ++G+IF EL A+ + + ++ LE + ++ +
Sbjct: 329 DLLPHVNEIGKIFAEELQGLAD-----------------DVRGIGLAWGLEYNEKKVRDR 371
Query: 221 ------DAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINTM 261
GL+ P + IR+ P L I+E+E ++GLDI+ I +
Sbjct: 372 IIGESFKRGLLLLPAGRSAIRVIPPLVISEEEAKQGLDILKKVIKVV 418
>pdb|1SF2|A Chain A, Structure Of E. Coli Gamma-Aminobutyrate Aminotransferase
pdb|1SF2|B Chain B, Structure Of E. Coli Gamma-Aminobutyrate Aminotransferase
pdb|1SF2|C Chain C, Structure Of E. Coli Gamma-Aminobutyrate Aminotransferase
pdb|1SF2|D Chain D, Structure Of E. Coli Gamma-Aminobutyrate Aminotransferase
pdb|1SFF|A Chain A, Structure Of Gamma-Aminobutyrate Aminotransferase Complex
With Aminooxyacetate
pdb|1SFF|B Chain B, Structure Of Gamma-Aminobutyrate Aminotransferase Complex
With Aminooxyacetate
pdb|1SFF|C Chain C, Structure Of Gamma-Aminobutyrate Aminotransferase Complex
With Aminooxyacetate
pdb|1SFF|D Chain D, Structure Of Gamma-Aminobutyrate Aminotransferase Complex
With Aminooxyacetate
Length = 426
Score = 122 bits (307), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 70/230 (30%), Positives = 119/230 (51%), Gaps = 16/230 (6%)
Query: 40 NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYED 99
+I A ++EP+QGE G +++++RALC ++ ++ IADEVQ+G GRTG L A+
Sbjct: 199 DIAAIVIEPVQGEGGFYASSPAFMQRLRALCDEHGIMLIADEVQSGAGRTGTLFAMEQMG 258
Query: 100 VRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILE 159
V PD+ K+++GG +P++ V EVM + PG G TY GNP+AC A+ L V +
Sbjct: 259 VAPDLTTFAKSIAGG-FPLAGVTGRAEVMDAVAPGGLGGTYAGNPIACVAALEVLKVFEQ 317
Query: 160 ENMIENAYKMGEIFRSELSSPANXXXXXXXXXXXXXXXXI--------NTLILSVSAILE 211
EN+++ A +G+ + L + A I N ++A
Sbjct: 318 ENLLQKANDLGQKLKDGLLAIAEKHPEIGDVRGLGAMIAIELFEDGDHNKPDAKLTA--- 374
Query: 212 VYDVCIKMKDAGLVTKPIS--NNIIRLSPALNITEQELREGLDIIINTIN 259
++ + +D GL+ N++R+ L I + ++R+GL+II +
Sbjct: 375 --EIVARARDKGLILLSCGPYYNVLRILVPLTIEDAQIRQGLEIISQCFD 422
>pdb|1SZS|A Chain A, The Structure Of Gamma-aminobutyrate Aminotransferase
Mutant: I50q
pdb|1SZS|B Chain B, The Structure Of Gamma-aminobutyrate Aminotransferase
Mutant: I50q
pdb|1SZS|C Chain C, The Structure Of Gamma-aminobutyrate Aminotransferase
Mutant: I50q
pdb|1SZS|D Chain D, The Structure Of Gamma-aminobutyrate Aminotransferase
Mutant: I50q
Length = 426
Score = 122 bits (307), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 70/230 (30%), Positives = 119/230 (51%), Gaps = 16/230 (6%)
Query: 40 NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYED 99
+I A ++EP+QGE G +++++RALC ++ ++ IADEVQ+G GRTG L A+
Sbjct: 199 DIAAIVIEPVQGEGGFYASSPAFMQRLRALCDEHGIMLIADEVQSGAGRTGTLFAMEQMG 258
Query: 100 VRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILE 159
V PD+ K+++GG +P++ V EVM + PG G TY GNP+AC A+ L V +
Sbjct: 259 VAPDLTTFAKSIAGG-FPLAGVTGRAEVMDAVAPGGLGGTYAGNPIACVAALEVLKVFEQ 317
Query: 160 ENMIENAYKMGEIFRSELSSPANXXXXXXXXXXXXXXXXI--------NTLILSVSAILE 211
EN+++ A +G+ + L + A I N ++A
Sbjct: 318 ENLLQKANDLGQKLKDGLLAIAEKHPEIGDVRGLGAMIAIELFEDGDHNKPDAKLTA--- 374
Query: 212 VYDVCIKMKDAGLVTKPIS--NNIIRLSPALNITEQELREGLDIIINTIN 259
++ + +D GL+ N++R+ L I + ++R+GL+II +
Sbjct: 375 --EIVARARDKGLILLSCGPYYNVLRILVPLTIEDAQIRQGLEIISQCFD 422
>pdb|3OKS|A Chain A, Crystal Structure Of 4-Aminobutyrate Transaminase From
Mycobacterium Smegmatis
pdb|3OKS|B Chain B, Crystal Structure Of 4-Aminobutyrate Transaminase From
Mycobacterium Smegmatis
pdb|3OKS|C Chain C, Crystal Structure Of 4-Aminobutyrate Transaminase From
Mycobacterium Smegmatis
pdb|3OKS|D Chain D, Crystal Structure Of 4-Aminobutyrate Transaminase From
Mycobacterium Smegmatis
Length = 451
Score = 121 bits (304), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 71/220 (32%), Positives = 113/220 (51%), Gaps = 7/220 (3%)
Query: 40 NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYED 99
N+ A ++EPIQGE G +VP DG+L + C + +V+FIADEVQTG RTG + A +E
Sbjct: 227 NLAAVVIEPIQGEGGFIVPADGFLPTLLDWCRKNDVVFIADEVQTGFARTGAMFACEHEG 286
Query: 100 VRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILE 159
+ PD+++ ++GGL P+SAV E+M + G TYGGNP+AC A+ ++ I
Sbjct: 287 IDPDLIVTAXGIAGGL-PLSAVTGRAEIMDSPHVSGLGGTYGGNPIACAAALATIETIES 345
Query: 160 ENMIENAYKMGEIFR---SELSSPANXXXXXXXXXXXXXXXXINTLILSVSAILEVYDVC 216
E ++ A ++ +I + L + + + A L +C
Sbjct: 346 EGLVARAQQIEKIMKDRLGRLQAEDDRIGDVRGRGAMIAMELVKAGTTEPDADL-TKALC 404
Query: 217 IKMKDAGLVTKPIS--NNIIRLSPALNITEQELREGLDII 254
AG++ N++R P L+I + L EGLD++
Sbjct: 405 AGAHAAGVIVLSCGTYGNVVRFLPPLSIGDDLLNEGLDVL 444
>pdb|1SZU|A Chain A, The Structure Of Gamma-Aminobutyrate Aminotransferase
Mutant: V241a
pdb|1SZU|B Chain B, The Structure Of Gamma-Aminobutyrate Aminotransferase
Mutant: V241a
pdb|1SZU|C Chain C, The Structure Of Gamma-Aminobutyrate Aminotransferase
Mutant: V241a
pdb|1SZU|D Chain D, The Structure Of Gamma-Aminobutyrate Aminotransferase
Mutant: V241a
Length = 426
Score = 121 bits (303), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 69/230 (30%), Positives = 118/230 (51%), Gaps = 16/230 (6%)
Query: 40 NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYED 99
+I A ++EP+QGE G +++++RALC ++ ++ IADE Q+G GRTG L A+
Sbjct: 199 DIAAIVIEPVQGEGGFYASSPAFMQRLRALCDEHGIMLIADEAQSGAGRTGTLFAMEQMG 258
Query: 100 VRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILE 159
V PD+ K+++GG +P++ V EVM + PG G TY GNP+AC A+ L V +
Sbjct: 259 VAPDLTTFAKSIAGG-FPLAGVTGRAEVMDAVAPGGLGGTYAGNPIACVAALEVLKVFEQ 317
Query: 160 ENMIENAYKMGEIFRSELSSPANXXXXXXXXXXXXXXXXI--------NTLILSVSAILE 211
EN+++ A +G+ + L + A I N ++A
Sbjct: 318 ENLLQKANDLGQKLKDGLLAIAEKHPEIGDVRGLGAMIAIELFEDGDHNKPDAKLTA--- 374
Query: 212 VYDVCIKMKDAGLVTKPIS--NNIIRLSPALNITEQELREGLDIIINTIN 259
++ + +D GL+ N++R+ L I + ++R+GL+II +
Sbjct: 375 --EIVARARDKGLILLSCGPYYNVLRILVPLTIEDAQIRQGLEIISQCFD 422
>pdb|1SZK|A Chain A, The Structure Of Gamma-Aminobutyrate Aminotransferase
Mutant: E211s
pdb|1SZK|B Chain B, The Structure Of Gamma-Aminobutyrate Aminotransferase
Mutant: E211s
pdb|1SZK|C Chain C, The Structure Of Gamma-Aminobutyrate Aminotransferase
Mutant: E211s
pdb|1SZK|D Chain D, The Structure Of Gamma-Aminobutyrate Aminotransferase
Mutant: E211s
Length = 426
Score = 120 bits (301), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 69/230 (30%), Positives = 118/230 (51%), Gaps = 16/230 (6%)
Query: 40 NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYED 99
+I A ++EP+QG G +++++RALC ++ ++ IADEVQ+G GRTG L A+
Sbjct: 199 DIAAIVIEPVQGSGGFYASSPAFMQRLRALCDEHGIMLIADEVQSGAGRTGTLFAMEQMG 258
Query: 100 VRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILE 159
V PD+ K+++GG +P++ V EVM + PG G TY GNP+AC A+ L V +
Sbjct: 259 VAPDLTTFAKSIAGG-FPLAGVTGRAEVMDAVAPGGLGGTYAGNPIACVAALEVLKVFEQ 317
Query: 160 ENMIENAYKMGEIFRSELSSPANXXXXXXXXXXXXXXXXI--------NTLILSVSAILE 211
EN+++ A +G+ + L + A I N ++A
Sbjct: 318 ENLLQKANDLGQKLKDGLLAIAEKHPEIGDVRGLGAMIAIELFEDGDHNKPDAKLTA--- 374
Query: 212 VYDVCIKMKDAGLVTKPIS--NNIIRLSPALNITEQELREGLDIIINTIN 259
++ + +D GL+ N++R+ L I + ++R+GL+II +
Sbjct: 375 --EIVARARDKGLILLSCGPYYNVLRILVPLTIEDAQIRQGLEIISQCFD 422
>pdb|1VEF|A Chain A, Acetylornithine Aminotransferase From Thermus Thermophilus
Hb8
pdb|1VEF|B Chain B, Acetylornithine Aminotransferase From Thermus Thermophilus
Hb8
pdb|1WKG|A Chain A, Acetylornithine Aminotransferase From Thermus Thermophilus
Hb8
pdb|1WKG|B Chain B, Acetylornithine Aminotransferase From Thermus Thermophilus
Hb8
pdb|1WKH|A Chain A, Acetylornithine Aminotransferase From Thermus Thermophilus
Hb8
pdb|1WKH|B Chain B, Acetylornithine Aminotransferase From Thermus Thermophilus
Hb8
Length = 395
Score = 120 bits (300), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 63/177 (35%), Positives = 96/177 (54%), Gaps = 3/177 (1%)
Query: 3 ITTDPTSYNEFGPHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGY 62
+T +P F P + IPYNDV+AL K + A ++EP+QGE G +
Sbjct: 150 VTWEPKYREPFLPLVEPVEFIPYNDVEAL--KRAVDEETAAVILEPVQGEGGVRPATPEF 207
Query: 63 LKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVL 122
L+ R + + L I DE+QTG+GRTGK A + + PDI+ L KAL GG+ P+ +
Sbjct: 208 LRAAREITQEKGALLILDEIQTGMGRTGKRFAFEHFGIVPDILTLAKALGGGV-PLGVAV 266
Query: 123 ADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSS 179
+EV ++ G HG+T+GGNPLA + A+ + + E A ++G F +L +
Sbjct: 267 MREEVARSMPKGGHGTTFGGNPLAMAAGVAAIRYLERTRLWERAAELGPWFMEKLRA 323
>pdb|3R4T|A Chain A, Crystal Structure Of 4-Aminobutyrate Aminotransferase Gabt
From Mycobacterium Marinum Covalently Bound To Pyridoxal
Phosphate
Length = 467
Score = 118 bits (296), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 73/222 (32%), Positives = 115/222 (51%), Gaps = 11/222 (4%)
Query: 40 NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYED 99
N+ A ++EPI GE G +VP DG+L ++ C +V+FIADEVQTG RTG + A +E+
Sbjct: 244 NLAAVIIEPIAGEGGFIVPADGFLPALQRWCRDNDVVFIADEVQTGFARTGAMFACDHEN 303
Query: 100 VRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILE 159
V PD+++ ++ G +P+SAV E+M G T+GGNP+AC A+ ++ I
Sbjct: 304 VEPDLIVTAXGIADG-FPLSAVTGRAEIMDAPHTSGLGGTFGGNPVACAAALATIETIER 362
Query: 160 ENMIENAYK-----MGEIFRSELSSPANXXXXXXXXXXXXXXXXINTLILSVSAILEVYD 214
+ M+E A + M + R L + + + + A L
Sbjct: 363 DGMVERARQIERLVMDRLLR--LQAADDRLGDVRGRGAMIAMELVKSGTAEPDAAL-TQK 419
Query: 215 VCIKMKDAGLV--TKPISNNIIRLSPALNITEQELREGLDII 254
+ AG++ T + N+IRL P L I+++ L EGLDI+
Sbjct: 420 LAAAAHAAGVIVLTCGMFGNVIRLLPPLTISDELLSEGLDIL 461
>pdb|3NX3|A Chain A, Crystal Structure Of Acetylornithine Aminotransferase
(Argd) From Campylobacter Jejuni
pdb|3NX3|B Chain B, Crystal Structure Of Acetylornithine Aminotransferase
(Argd) From Campylobacter Jejuni
Length = 395
Score = 116 bits (290), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 59/167 (35%), Positives = 87/167 (52%), Gaps = 2/167 (1%)
Query: 3 ITTDPTSYNEFGPHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGY 62
+T + F P + G YND+ ++E + N CA ++E +QGE G + +
Sbjct: 144 LTANEKYQKPFKPLISGVKFAKYNDISSVEKLV--NEKTCAIILESVQGEGGINPANKDF 201
Query: 63 LKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVL 122
K +R LC + ++L IADE+Q G GR+GK A + + PDI KAL GL + V+
Sbjct: 202 YKALRKLCDEKDILLIADEIQCGXGRSGKFFAYEHAQILPDIXTSAKALGCGLSVGAFVI 261
Query: 123 ADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKM 169
+L G HGSTYGGNPL C ++ EE ++EN K+
Sbjct: 262 NQKVASNSLEAGDHGSTYGGNPLVCAGVNAVFEIFKEEKILENVNKL 308
>pdb|3Q8N|A Chain A, Crystal Structure Of 4-Aminobutyrate Transaminase From
Mycobacterium Smegmatis
pdb|3Q8N|B Chain B, Crystal Structure Of 4-Aminobutyrate Transaminase From
Mycobacterium Smegmatis
pdb|3Q8N|C Chain C, Crystal Structure Of 4-Aminobutyrate Transaminase From
Mycobacterium Smegmatis
pdb|3Q8N|D Chain D, Crystal Structure Of 4-Aminobutyrate Transaminase From
Mycobacterium Smegmatis
Length = 453
Score = 114 bits (284), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 78/221 (35%), Positives = 115/221 (52%), Gaps = 9/221 (4%)
Query: 40 NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYED 99
N+ A ++EP+ GE G VVP G+L ++ C+ +F+ADEVQTG RTG L A +E+
Sbjct: 228 NVAAVVIEPVHGEGGFVVPAPGFLGALQKWCTDNGAVFVADEVQTGFARTGALFACEHEN 287
Query: 100 VRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILE 159
V PD+++ K ++GGL P+SAV E+M G G TYGGNPLAC A+ +D I
Sbjct: 288 VVPDLIVTAKGIAGGL-PLSAVTGRAEIMDGPQSGGLGGTYGGNPLACAAALAVIDTIER 346
Query: 160 ENMIENAYKMGEIFRSELSSPANXXXXXXXXXXXXXXXXINTLILSVSAILEVYDVCIKM 219
EN++ A +GE S L + A + ++ D+ ++
Sbjct: 347 ENLVARARAIGETMLSRLGALAAADPRIGEVRGRGAMIAVE--LVKPGTTEPDADLTKRV 404
Query: 220 KDA----GLV--TKPISNNIIRLSPALNITEQELREGLDII 254
A GLV T N++R P L++ + L EGLDI+
Sbjct: 405 AAAAHAQGLVVLTCGTYGNVLRFLPPLSMPDHLLDEGLDIL 445
>pdb|3DOD|A Chain A, Crystal Structure Of Plp Bound 7,8-diaminopelargonic Acid
Synthase In Bacillus Subtilis
pdb|3DOD|B Chain B, Crystal Structure Of Plp Bound 7,8-diaminopelargonic Acid
Synthase In Bacillus Subtilis
pdb|3DRD|A Chain A, Crystal Structure Of 7,8 Diaminopelargonic Acid Synthase
Apoenzyme In Bacillus Subtilis
pdb|3DRD|B Chain B, Crystal Structure Of 7,8 Diaminopelargonic Acid Synthase
Apoenzyme In Bacillus Subtilis
Length = 448
Score = 110 bits (276), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 72/241 (29%), Positives = 120/241 (49%), Gaps = 14/241 (5%)
Query: 36 KSNPNICAFMVEP-IQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLA 94
+ + I A +E +QG +G +V +GYL VR LC+ Y+VL I DEV TG GRTGK+ A
Sbjct: 206 EHHEEIAALSIESMVQGASGMIVMPEGYLAGVRELCTTYDVLMIVDEVATGFGRTGKMFA 265
Query: 95 IHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGT-------LVPGTHGSTYGGNPLAC 147
+E+V+PD++ GK ++GG PI+ A +++ L HG +Y GN L C
Sbjct: 266 CEHENVQPDLMAAGKGITGGYLPIAVTFATEDIYKAFYDDYENLKTFFHGHSYTGNQLGC 325
Query: 148 KLAMTALDVILEENMIEN----AYKMGEIFRSELSSPANXXXXXXXXXXXXXXXXINTLI 203
+A+ L + EN++E + K+ + + + P
Sbjct: 326 AVALENLALFESENIVEQVAEKSKKLHFLLQDLHALPHVGDIRQLGFMCGAELVRSKETK 385
Query: 204 LSVSAILEV-YDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINTMA 262
A + Y V +KM++ G++T+P+ ++I P L T +EL E + I+ I+ +
Sbjct: 386 EPYPADRRIGYKVSLKMRELGMLTRPL-GDVIAFLPPLASTAEELSEMVAIMKQAIHEVT 444
Query: 263 A 263
+
Sbjct: 445 S 445
>pdb|3DU4|A Chain A, Crystal Structure Of 7-Keto-8-Aminopelargonic Acid Bound
7,8- Diaminopelargonic Acid Synthase In Bacillus
Subtilis
pdb|3DU4|B Chain B, Crystal Structure Of 7-Keto-8-Aminopelargonic Acid Bound
7,8- Diaminopelargonic Acid Synthase In Bacillus
Subtilis
Length = 448
Score = 110 bits (276), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 72/241 (29%), Positives = 120/241 (49%), Gaps = 14/241 (5%)
Query: 36 KSNPNICAFMVEP-IQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLA 94
+ + I A +E +QG +G +V +GYL VR LC+ Y+VL I DEV TG GRTGK+ A
Sbjct: 206 EHHEEIAALSIESMVQGASGMIVMPEGYLAGVRELCTTYDVLMIVDEVATGFGRTGKMFA 265
Query: 95 IHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGT-------LVPGTHGSTYGGNPLAC 147
+E+V+PD++ GK ++GG PI+ A +++ L HG +Y GN L C
Sbjct: 266 CEHENVQPDLMAAGKGITGGYLPIAVTFATEDIYKAFYDDYENLKTFFHGHSYTGNQLGC 325
Query: 148 KLAMTALDVILEENMIEN----AYKMGEIFRSELSSPANXXXXXXXXXXXXXXXXINTLI 203
+A+ L + EN++E + K+ + + + P
Sbjct: 326 AVALENLALFESENIVEQVAEKSKKLHFLLQDLHALPHVGDIRQLGFMCGAELVRSKETK 385
Query: 204 LSVSAILEV-YDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINTMA 262
A + Y V +KM++ G++T+P+ ++I P L T +EL E + I+ I+ +
Sbjct: 386 EPYPADRRIGYKVSLKMRELGMLTRPL-GDVIAFLPPLASTAEELSEMVAIMKQAIHEVT 444
Query: 263 A 263
+
Sbjct: 445 S 445
>pdb|3I4J|A Chain A, Crystal Structure Of Aminotransferase, Class Iii From
Deinococcus Radiodurans
pdb|3I4J|B Chain B, Crystal Structure Of Aminotransferase, Class Iii From
Deinococcus Radiodurans
pdb|3I4J|C Chain C, Crystal Structure Of Aminotransferase, Class Iii From
Deinococcus Radiodurans
pdb|3I4J|D Chain D, Crystal Structure Of Aminotransferase, Class Iii From
Deinococcus Radiodurans
Length = 430
Score = 103 bits (256), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 56/153 (36%), Positives = 91/153 (59%), Gaps = 8/153 (5%)
Query: 26 NDVDALEAKL-KSNPN-ICAFMVEPIQGEA-GAVVPDDGYLKKVRALCSQYNVLFIADEV 82
D + L A L + P + AFM EP+ G + A+ P GY ++VR +C + ++FIADEV
Sbjct: 174 EDAEGLRALLEREGPETVAAFMAEPVVGASDAALAPAPGYYERVRDICDEAGIIFIADEV 233
Query: 83 QTGLGRTGKLLAI-HYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGT----HG 137
+G+GR G LA+ + V PDI +LGK L+ G P++ +LA +V T++ G+ HG
Sbjct: 234 MSGMGRCGSPLALSRWSGVTPDIAVLGKGLAAGYAPLAGLLAAPQVYETVMGGSGAFMHG 293
Query: 138 STYGGNPLACKLAMTALDVILEENMIENAYKMG 170
TY G+P++ ++ LD++ E++ A + G
Sbjct: 294 FTYAGHPVSVAAGLSVLDIVEREDLTGAAKERG 326
>pdb|3TFT|A Chain A, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
(Bioa) From Mycobacterium Tuberculosis, Pre-Reaction
Complex With A 3,6- Dihydropyrid-2-One Heterocycle
Inhibitor
pdb|3TFT|B Chain B, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
(Bioa) From Mycobacterium Tuberculosis, Pre-Reaction
Complex With A 3,6- Dihydropyrid-2-One Heterocycle
Inhibitor
pdb|3TFU|A Chain A, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
(Bioa) From Mycobacterium Tuberculosis, Post-Reaction
Complex With A 3,6- Dihydropyrid-2-One Heterocycle
Inhibitor
pdb|3TFU|B Chain B, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
(Bioa) From Mycobacterium Tuberculosis, Post-Reaction
Complex With A 3,6- Dihydropyrid-2-One Heterocycle
Inhibitor
Length = 457
Score = 101 bits (252), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 60/167 (35%), Positives = 92/167 (55%), Gaps = 9/167 (5%)
Query: 3 ITTDPTSYNEFGPHMPGYNIIPYNDVDALEAKLKSNPN-ICAFMVEPI-QGEAGAVVPDD 60
+ TD + F P +P Y+ A EA+L + + A +VEP+ QG G D
Sbjct: 197 LWTDVLAAQVFAPQVPRDYDPAYSA--AFEAQLAQHAGELAAVVVEPVVQGAGGMRFHDP 254
Query: 61 GYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISA 120
YL +R +C +Y VL I DE+ TG GRTG L A + V PDI+ +GKAL+GG ++A
Sbjct: 255 RYLHDLRDICRRYEVLLIFDEIATGFGRTGALFAADHAGVSPDIMCVGKALTGGYLSLAA 314
Query: 121 VLADDEVMGTLVPGT-----HGSTYGGNPLACKLAMTALDVILEENM 162
L +V T+ G HG T+ NPLAC +++ +++++L ++
Sbjct: 315 TLCTADVAHTISAGAAGALMHGPTFMANPLACAVSVASVELLLGQDW 361
>pdb|3A8U|X Chain X, Crystal Structure Of Omega-Amino Acid:pyruvate
Aminotransferase
Length = 449
Score = 100 bits (249), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 66/237 (27%), Positives = 110/237 (46%), Gaps = 11/237 (4%)
Query: 34 KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLL 93
+L NI A VEP+ G AG +VP +GYLK+ R +C+Q+N+L + DEV TG GRTG +
Sbjct: 213 ELHDASNIAAVFVEPLAGSAGVLVPPEGYLKRNREICNQHNILLVFDEVITGFGRTGSMF 272
Query: 94 AIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTL---------VPGTHGSTYGGNP 144
V PD++ + K ++ G P+ AV+A E+ T V HG TY +P
Sbjct: 273 GADSFGVTPDLMCIAKQVTNGAIPMGAVIASTEIYQTFMNQPTPEYAVEFPHGYTYSAHP 332
Query: 145 LACKLAMTALDVILEENMIENAYKMGEIFRSELSSPANXXXXXXXXXXXXXXXXINTLIL 204
+AC + AL ++ +EN++++ ++ F L I
Sbjct: 333 VACAAGLAALCLLQKENLVQSVAEVAPHFEKALHG-IKGAKNVIDIRNFGLAGAIQIAPR 391
Query: 205 SVSAILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINTM 261
AI+ ++ + + AG + + ++ P N Q+L D + +N +
Sbjct: 392 DGDAIVRPFEAGMALWKAGFYVR-FGGDTLQFGPTFNSKPQDLDRLFDAVGEVLNKL 447
>pdb|3HMU|A Chain A, Crystal Structure Of A Class Iii Aminotransferase From
Silicibacter Pomeroyi
pdb|3HMU|B Chain B, Crystal Structure Of A Class Iii Aminotransferase From
Silicibacter Pomeroyi
Length = 472
Score = 100 bits (248), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 47/128 (36%), Positives = 73/128 (57%), Gaps = 2/128 (1%)
Query: 40 NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYED 99
+ AF+ EP+QG G +V D Y +++ +C +Y++L IADEV G GRTG
Sbjct: 223 RVAAFIAEPVQGAGGVIVAPDSYWPEIQRICDKYDILLIADEVICGFGRTGNWFGTQTMG 282
Query: 100 VRPDIVILGKALSGGLYPISAVLADDEVMGTLVPG--THGSTYGGNPLACKLAMTALDVI 157
+RP I+ + K LS G PI + DEV + HG TY G+P+A +A+ L ++
Sbjct: 283 IRPHIMTIAKGLSSGYAPIGGSIVCDEVAHVIGKDEFNHGYTYSGHPVAAAVALENLRIL 342
Query: 158 LEENMIEN 165
EEN++++
Sbjct: 343 EEENILDH 350
>pdb|3GJU|A Chain A, Crystal Structure Of A Putative Aminotransferase (Mll7127)
From Mesorhizobium Loti Maff303099 At 1.55 A Resolution
Length = 459
Score = 100 bits (248), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 55/146 (37%), Positives = 81/146 (55%), Gaps = 8/146 (5%)
Query: 41 ICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDV 100
I AF+ EPI G G V P GY +K++A+ +Y+VL +ADEV TG GR G + +
Sbjct: 222 IAAFIGEPILGTGGIVPPPAGYWEKIQAVLKKYDVLLVADEVVTGFGRLGTXFGSDHYGI 281
Query: 101 RPD-IVILGKALSGGLYPISAVLADDEVMGTLVPGT-------HGSTYGGNPLACKLAMT 152
+PD I I K L+ P+S V+ D V LV G+ HG TY +P+ +
Sbjct: 282 KPDLITIAXKGLTSAYAPLSGVIVADRVWQVLVQGSDKLGSLGHGWTYSAHPICVAAGVA 341
Query: 153 ALDVILEENMIENAYKMGEIFRSELS 178
L++I E +++ NA + G FR+EL+
Sbjct: 342 NLELIDEXDLVTNAGETGAYFRAELA 367
>pdb|4FFC|A Chain A, Crystal Structure Of A 4-Aminobutyrate Aminotransferase
(Gabt) From Mycobacterium Abscessus
pdb|4FFC|B Chain B, Crystal Structure Of A 4-Aminobutyrate Aminotransferase
(Gabt) From Mycobacterium Abscessus
pdb|4FFC|C Chain C, Crystal Structure Of A 4-Aminobutyrate Aminotransferase
(Gabt) From Mycobacterium Abscessus
pdb|4FFC|D Chain D, Crystal Structure Of A 4-Aminobutyrate Aminotransferase
(Gabt) From Mycobacterium Abscessus
Length = 453
Score = 99.4 bits (246), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 87/287 (30%), Positives = 132/287 (45%), Gaps = 24/287 (8%)
Query: 1 MLITTDPTSY-NEFGPHMPGYNIIPYN-----------------DVDALEAKLKSNPNIC 42
M +T Y ++FGP P +P + + +E ++ + ++
Sbjct: 169 MALTAKSMPYKSQFGPFAPEVYRMPASYPLRDEPGLTGEEAARRAISRIETQIGAQ-SLA 227
Query: 43 AFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRP 102
A ++EPIQGE G +VP G+L + A S+ V+FIADEVQTG RTG A +E + P
Sbjct: 228 AIIIEPIQGEGGFIVPAPGFLATLTAWASENGVVFIADEVQTGFARTGAWFASEHEGIVP 287
Query: 103 DIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENM 162
DIV + ++GG+ P+SAV E+M + G G TYGGNP+ C A+ AL V+ E ++
Sbjct: 288 DIVTMAXGIAGGM-PLSAVTGRAELMDAVYAGGLGGTYGGNPVTCAAAVAALGVMRELDL 346
Query: 163 IENAYKMGEIFRSELSSPANXXXXXXXXXXXXXXXXINTL---ILSVSAILEVYDVCIKM 219
A + S LS+ A I + L A L +
Sbjct: 347 PARARAIEASVTSRLSALAEEVDIIGEVRGRGAMLAIEIVKPGTLEPDAALTKSIAAEAL 406
Query: 220 KDAGLV-TKPISNNIIRLSPALNITEQELREGLDIIINTINTMAAKK 265
L+ T N+IRL P L I + L EG+ + + I A+ +
Sbjct: 407 SQGVLILTCGTFGNVIRLLPPLVIGDDLLDEGITALSDIIRAKASHQ 453
>pdb|3BV0|A Chain A, Crystal Structure Of Plp Bound 7,8-Diaminopelargonic Acid
Synthase In Mycobacterium Tuberculosis
pdb|3BV0|B Chain B, Crystal Structure Of Plp Bound 7,8-Diaminopelargonic Acid
Synthase In Mycobacterium Tuberculosis
Length = 437
Score = 99.0 bits (245), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 59/167 (35%), Positives = 92/167 (55%), Gaps = 9/167 (5%)
Query: 3 ITTDPTSYNEFGPHMPGYNIIPYNDVDALEAKLKSNPN-ICAFMVEPI-QGEAGAVVPDD 60
+ TD + F P +P Y+ A EA+L + + A +VEP+ QG G D
Sbjct: 177 LWTDVLAAQVFAPQVPRDYDPAYSA--AFEAQLAQHAGELAAVVVEPVVQGAGGMRFHDP 234
Query: 61 GYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISA 120
YL +R +C +Y VL I DE+ TG GRTG L A + V PDI+ +GKAL+GG ++A
Sbjct: 235 RYLHDLRDICRRYEVLLIFDEIATGFGRTGALFAADHAGVSPDIMCVGKALTGGYLSLAA 294
Query: 121 VLADDEVMGTLVPGTHGS-----TYGGNPLACKLAMTALDVILEENM 162
L +V T+ G G+ T+ NPLAC +++ +++++L ++
Sbjct: 295 TLCTADVAHTISAGAAGALMRGPTFMANPLACAVSVASVELLLGQDW 341
>pdb|3LV2|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis
7,8-Diaminopelargonic Acid Synthase In Complex With
Substrate Analog Sinefungin
pdb|3LV2|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis
7,8-Diaminopelargonic Acid Synthase In Complex With
Substrate Analog Sinefungin
Length = 462
Score = 98.6 bits (244), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 59/167 (35%), Positives = 92/167 (55%), Gaps = 9/167 (5%)
Query: 3 ITTDPTSYNEFGPHMPGYNIIPYNDVDALEAKLKSNPN-ICAFMVEPI-QGEAGAVVPDD 60
+ TD + F P +P Y+ A EA+L + + A +VEP+ QG G D
Sbjct: 202 LWTDVLAAQVFAPQVPRDYDPAYSA--AFEAQLAQHAGELAAVVVEPVVQGAGGMRFHDP 259
Query: 61 GYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISA 120
YL +R +C +Y VL I DE+ TG GRTG L A + V PDI+ +GKAL+GG ++A
Sbjct: 260 RYLHDLRDICRRYEVLLIFDEIATGFGRTGALFAADHAGVSPDIMCVGKALTGGYLSLAA 319
Query: 121 VLADDEVMGTLVPGTHGS-----TYGGNPLACKLAMTALDVILEENM 162
L +V T+ G G+ T+ NPLAC +++ +++++L ++
Sbjct: 320 TLCTADVAHTISAGAAGALMRGPTFMANPLACAVSVASVELLLGQDW 366
>pdb|1DTY|A Chain A, Crystal Structure Of
Adenosylmethionine-8-Amino-7-Oxonanoate Aminotransferase
With Pyridoxal Phosphate Cofactor.
pdb|1DTY|B Chain B, Crystal Structure Of
Adenosylmethionine-8-Amino-7-Oxonanoate Aminotransferase
With Pyridoxal Phosphate Cofactor
Length = 429
Score = 94.7 bits (234), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 50/112 (44%), Positives = 68/112 (60%), Gaps = 6/112 (5%)
Query: 40 NICAFMVEPI-QGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYE 98
I A ++EPI QG G + +LK++R +C + +L IADE+ TG GRTGKL A +
Sbjct: 204 EIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTGKLFACEHA 263
Query: 99 DVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPG-----THGSTYGGNPL 145
++ PDI+ LGKAL+GG +SA L EV T+ G HG T+ GNPL
Sbjct: 264 EIAPDILCLGKALTGGTMTLSATLTTREVAETISDGEAGCFMHGPTFMGNPL 315
>pdb|1MGV|A Chain A, Crystal Structure Of The R391a Mutant Of
7,8-Diaminopelargonic Acid Synthase
pdb|1MGV|B Chain B, Crystal Structure Of The R391a Mutant Of
7,8-Diaminopelargonic Acid Synthase
Length = 429
Score = 94.7 bits (234), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 50/112 (44%), Positives = 68/112 (60%), Gaps = 6/112 (5%)
Query: 40 NICAFMVEPI-QGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYE 98
I A ++EPI QG G + +LK++R +C + +L IADE+ TG GRTGKL A +
Sbjct: 204 EIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTGKLFACEHA 263
Query: 99 DVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPG-----THGSTYGGNPL 145
++ PDI+ LGKAL+GG +SA L EV T+ G HG T+ GNPL
Sbjct: 264 EIAPDILCLGKALTGGTMTLSATLTTREVAETISNGEAGCFMHGPTFMGNPL 315
>pdb|1QJ3|A Chain A, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
In Complex With 7-Keto-8-Aminopelargonic Acid
pdb|1QJ3|B Chain B, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
In Complex With 7-Keto-8-Aminopelargonic Acid
pdb|1QJ5|A Chain A, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
pdb|1QJ5|B Chain B, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
pdb|1MLY|A Chain A, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
In Complex With The Cis Isomer Of Amiclenomycin
pdb|1MLY|B Chain B, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
In Complex With The Cis Isomer Of Amiclenomycin
pdb|1MLZ|A Chain A, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
In Complex With The Trans-Isomer Of Amiclenomycin.
pdb|1MLZ|B Chain B, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
In Complex With The Trans-Isomer Of Amiclenomycin
Length = 429
Score = 94.4 bits (233), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 50/112 (44%), Positives = 68/112 (60%), Gaps = 6/112 (5%)
Query: 40 NICAFMVEPI-QGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYE 98
I A ++EPI QG G + +LK++R +C + +L IADE+ TG GRTGKL A +
Sbjct: 204 EIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTGKLFACEHA 263
Query: 99 DVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPG-----THGSTYGGNPL 145
++ PDI+ LGKAL+GG +SA L EV T+ G HG T+ GNPL
Sbjct: 264 EIAPDILCLGKALTGGTMTLSATLTTREVAETISNGEAGCFMHGPTFMGNPL 315
>pdb|3NUI|A Chain A, Crystal Structure Of Omega-Transferase From Vibrio
Fluvialis Js17
pdb|3NUI|B Chain B, Crystal Structure Of Omega-Transferase From Vibrio
Fluvialis Js17
Length = 478
Score = 94.4 bits (233), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 60/240 (25%), Positives = 103/240 (42%), Gaps = 19/240 (7%)
Query: 40 NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYED 99
I F EP+ G G + P GY + + + +Y++ I+DEV G GRTG D
Sbjct: 230 TIAGFFAEPVMGAGGVIPPAKGYFQAILPILRKYDIPVISDEVICGFGRTGNTWGCVTYD 289
Query: 100 VRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGT-------HGSTYGGNPLACKLAMT 152
PD +I K L+ G +P+ AV+ E+ L HG T G+P+ C +A+
Sbjct: 290 FTPDAIISSKNLTAGFFPMGAVILGPELSKRLETAIEAIEEFPHGFTASGHPVGCAIALK 349
Query: 153 ALDVILEENMIENAYKMGEIFRSELSSPANX--------XXXXXXXXXXXXXXXINTLIL 204
A+DV++ E + EN ++ F L A
Sbjct: 350 AIDVVMNEGLAENVRRLAPRFEERLKHIAERPNIGEYRGIGFMWALEAVKDKASKTPFDG 409
Query: 205 SVSAILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINTMAAK 264
++S + + C D GL+ +P+ +++ L P +TE ++ E D + ++ + A+
Sbjct: 410 NLSVSERIANTCT---DLGLICRPLGQSVV-LCPPFILTEAQMDEMFDKLEKALDKVFAE 465
>pdb|3N5M|A Chain A, Crystals Structure Of A Bacillus Anthracis
Aminotransferase
pdb|3N5M|B Chain B, Crystals Structure Of A Bacillus Anthracis
Aminotransferase
pdb|3N5M|C Chain C, Crystals Structure Of A Bacillus Anthracis
Aminotransferase
pdb|3N5M|D Chain D, Crystals Structure Of A Bacillus Anthracis
Aminotransferase
Length = 452
Score = 93.2 bits (230), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 51/144 (35%), Positives = 72/144 (50%), Gaps = 6/144 (4%)
Query: 41 ICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDV 100
I AF+ EPI G + Y K V C ++ L I+DEV G GRTGK DV
Sbjct: 216 IAAFIXEPIITGGGILXAPQDYXKAVHETCQKHGALLISDEVICGFGRTGKAFGFXNYDV 275
Query: 101 RPDIVILGKALSGGLYPISAVLADDEVM------GTLVPGTHGSTYGGNPLACKLAMTAL 154
+PDI+ K ++ P+SA E+ G H +T+GGNP AC LA+ L
Sbjct: 276 KPDIITXAKGITSAYLPLSATAVKREIYEAFKGKGEYEFFRHINTFGGNPAACALALKNL 335
Query: 155 DVILEENMIENAYKMGEIFRSELS 178
++I EN+IE + + G + +L
Sbjct: 336 EIIENENLIERSAQXGSLLLEQLK 359
>pdb|1S08|A Chain A, Crystal Structure Of The D147n Mutant Of 7,8-
Diaminopelargonic Acid Synthase
pdb|1S08|B Chain B, Crystal Structure Of The D147n Mutant Of 7,8-
Diaminopelargonic Acid Synthase
Length = 429
Score = 92.4 bits (228), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 49/112 (43%), Positives = 67/112 (59%), Gaps = 6/112 (5%)
Query: 40 NICAFMVEPI-QGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYE 98
I A ++EPI QG G + +LK++R +C + +L IADE+ TG GRTGKL A +
Sbjct: 204 EIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTGKLFACEHA 263
Query: 99 DVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPG-----THGSTYGGNPL 145
++ PDI+ LG AL+GG +SA L EV T+ G HG T+ GNPL
Sbjct: 264 EIAPDILCLGXALTGGTMTLSATLTTREVAETISNGEAGCFMHGPTFMGNPL 315
>pdb|1S09|A Chain A, Crystal Structure Of The Y144f Mutant Of 7,8-
Diaminopelargonic Acid Synthase
pdb|1S09|B Chain B, Crystal Structure Of The Y144f Mutant Of 7,8-
Diaminopelargonic Acid Synthase
Length = 429
Score = 92.4 bits (228), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 49/112 (43%), Positives = 67/112 (59%), Gaps = 6/112 (5%)
Query: 40 NICAFMVEPI-QGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYE 98
I A ++EPI QG G + +LK++R +C + +L IADE+ TG GRTGKL A +
Sbjct: 204 EIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTGKLFACEHA 263
Query: 99 DVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPG-----THGSTYGGNPL 145
++ PDI+ LG AL+GG +SA L EV T+ G HG T+ GNPL
Sbjct: 264 EIAPDILCLGXALTGGTMTLSATLTTREVAETISNGEAGCFMHGPTFMGNPL 315
>pdb|1S0A|A Chain A, Crystal Structure Of The Y17f Mutant Of 7,8-
Diaminopelargonic Acid Synthase
pdb|1S0A|B Chain B, Crystal Structure Of The Y17f Mutant Of 7,8-
Diaminopelargonic Acid Synthase
Length = 429
Score = 92.4 bits (228), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 49/112 (43%), Positives = 67/112 (59%), Gaps = 6/112 (5%)
Query: 40 NICAFMVEPI-QGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYE 98
I A ++EPI QG G + +LK++R +C + +L IADE+ TG GRTGKL A +
Sbjct: 204 EIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTGKLFACEHA 263
Query: 99 DVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPG-----THGSTYGGNPL 145
++ PDI+ LG AL+GG +SA L EV T+ G HG T+ GNPL
Sbjct: 264 EIAPDILCLGXALTGGTMTLSATLTTREVAETISNGEAGCFMHGPTFMGNPL 315
>pdb|4E3Q|A Chain A, Pmp-Bound Form Of Aminotransferase Crystal Structure From
Vibrio Fluvialis
pdb|4E3Q|B Chain B, Pmp-Bound Form Of Aminotransferase Crystal Structure From
Vibrio Fluvialis
pdb|4E3Q|C Chain C, Pmp-Bound Form Of Aminotransferase Crystal Structure From
Vibrio Fluvialis
pdb|4E3Q|D Chain D, Pmp-Bound Form Of Aminotransferase Crystal Structure From
Vibrio Fluvialis
Length = 473
Score = 92.0 bits (227), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 61/239 (25%), Positives = 101/239 (42%), Gaps = 19/239 (7%)
Query: 41 ICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDV 100
I F EP+ G G + P GY + + + +Y++ I+DEV G GRTG D
Sbjct: 237 IAGFFAEPVXGAGGVIPPAKGYFQAILPILRKYDIPVISDEVICGFGRTGNTWGCVTYDF 296
Query: 101 RPDIVILGKALSGGLYPISAVLADDEVMGTLVPG-------THGSTYGGNPLACKLAMTA 153
PD +I K L+ G +P AV+ E+ L HG T G+P+ C +A+ A
Sbjct: 297 TPDAIISSKNLTAGFFPXGAVILGPELSKRLETAIEAIEEFPHGFTASGHPVGCAIALKA 356
Query: 154 LDVILEENMIENAYKMGEIFRSELSSPANX--------XXXXXXXXXXXXXXXINTLILS 205
+DV+ E + EN ++ F L A +
Sbjct: 357 IDVVXNEGLAENVRRLAPRFEERLKHIAERPNIGEYRGIGFXWALEAVKDKASKTPFDGN 416
Query: 206 VSAILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINTMAAK 264
+S + + C D GL+ +P+ +++ L P +TE + E D + ++ + A+
Sbjct: 417 LSVSERIANTCT---DLGLICRPLGQSVV-LCPPFILTEAQXDEXFDKLEKALDKVFAE 471
>pdb|3I5T|A Chain A, Crystal Structure Of Aminotransferase Prk07036 From
Rhodobacter Sphaeroides Kd131
pdb|3I5T|B Chain B, Crystal Structure Of Aminotransferase Prk07036 From
Rhodobacter Sphaeroides Kd131
Length = 476
Score = 91.7 bits (226), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 66/252 (26%), Positives = 121/252 (48%), Gaps = 18/252 (7%)
Query: 28 VDALEAKLKS-NPN-ICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTG 85
V E +++S P+ I AF+ EPI G ++P GY + +A+C ++++L+I+DEV TG
Sbjct: 207 VQEFEDRIESLGPDTIAAFLAEPILASGGVIIPPAGYHARFKAICEKHDILYISDEVVTG 266
Query: 86 LGRTGKLLAIH-YEDVRPDIVILGKALSGGLYPISAVLADDEVM----GTLVPG---THG 137
GR G+ A V PDI+ K ++ G P+ + + V+ G G T+G
Sbjct: 267 FGRCGEWFASEKVFGVVPDIITFAKGVTSGYVPLGGLAISEAVLARISGENAKGSWFTNG 326
Query: 138 STYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSSPANXXXXXXXXXXXXXXX 197
TY P+AC A+ ++++ E +++ A +M + F + L+S
Sbjct: 327 YTYSNQPVACAAALANIELMEREGIVDQAREMADYFAAALAS-LRDLPGVAETRSVGLVG 385
Query: 198 XINTLILSVSAILEVYDVCIKMK------DAGLVTKPISNNIIRLSPALNITEQELREGL 251
+ L+ A D +K + GL+ +P+ + + +SP L I+ ++ E +
Sbjct: 386 CVQCLLDPTRADGTAEDKAFTLKIDERCFELGLIVRPLGDLCV-ISPPLIISRAQIDEMV 444
Query: 252 DIIINTINTMAA 263
I+ I ++A
Sbjct: 445 AIMRQAITEVSA 456
>pdb|1S07|A Chain A, Crystal Structure Of The R253a Mutant Of
7,8-Diaminopelargonic Acid Synthase
pdb|1S07|B Chain B, Crystal Structure Of The R253a Mutant Of
7,8-Diaminopelargonic Acid Synthase
Length = 429
Score = 91.3 bits (225), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 49/112 (43%), Positives = 67/112 (59%), Gaps = 6/112 (5%)
Query: 40 NICAFMVEPI-QGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYE 98
I A ++EPI QG G + +LK++R +C + +L IADE+ TG G TGKL A +
Sbjct: 204 EIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGATGKLFACEHA 263
Query: 99 DVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPG-----THGSTYGGNPL 145
++ PDI+ LGKAL+GG +SA L EV T+ G HG T+ GNPL
Sbjct: 264 EIAPDILCLGKALTGGTMTLSATLTTREVAETISNGEAGCFMHGPTFMGNPL 315
>pdb|1S06|A Chain A, Crystal Structure Of The R253k Mutant Of 7,8-
Diaminopelargonic Acid Synthase
pdb|1S06|B Chain B, Crystal Structure Of The R253k Mutant Of 7,8-
Diaminopelargonic Acid Synthase
Length = 429
Score = 90.5 bits (223), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 48/112 (42%), Positives = 67/112 (59%), Gaps = 6/112 (5%)
Query: 40 NICAFMVEPI-QGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYE 98
I A ++EPI QG G + +LK++R +C + +L IADE+ TG G+TGKL A +
Sbjct: 204 EIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGKTGKLFACEHA 263
Query: 99 DVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPG-----THGSTYGGNPL 145
++ PDI+ LG AL+GG +SA L EV T+ G HG T+ GNPL
Sbjct: 264 EIAPDILCLGXALTGGTMTLSATLTTREVAETISNGEAGCFMHGPTFMGNPL 315
>pdb|4E3R|A Chain A, Plp-Bound Aminotransferase Mutant Crystal Structure From
Vibrio Fluvialis
pdb|4E3R|B Chain B, Plp-Bound Aminotransferase Mutant Crystal Structure From
Vibrio Fluvialis
pdb|4E3R|C Chain C, Plp-Bound Aminotransferase Mutant Crystal Structure From
Vibrio Fluvialis
pdb|4E3R|D Chain D, Plp-Bound Aminotransferase Mutant Crystal Structure From
Vibrio Fluvialis
Length = 473
Score = 90.5 bits (223), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 59/240 (24%), Positives = 101/240 (42%), Gaps = 19/240 (7%)
Query: 40 NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYED 99
I F EP+ G G + P GY + + + +Y++ I+DEV G GRTG D
Sbjct: 236 TIAGFFAEPVMGAGGVIPPAKGYFQAILPILRKYDIPVISDEVVCGFGRTGNTWGCVTYD 295
Query: 100 VRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGT-------HGSTYGGNPLACKLAMT 152
PD +I L+ G +P+ AV+ E+ L HG T G+P+ C +A+
Sbjct: 296 FTPDAIISSXNLTAGFFPMGAVILGPELSKRLETAIEAIEEFPHGFTASGHPVGCAIALK 355
Query: 153 ALDVILEENMIENAYKMGEIFRSELSSPANX--------XXXXXXXXXXXXXXXINTLIL 204
A+DV++ E + EN ++ F L A
Sbjct: 356 AIDVVMNEGLAENVRRLAPRFEERLKHIAERPNIGEYRGIGFMWALEAVKDKASKTPFDG 415
Query: 205 SVSAILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINTMAAK 264
++S + + C D GL+ P+ +++ L P +TE ++ E D + ++ + A+
Sbjct: 416 NLSVSERIANTCT---DLGLICFPLGQSVV-LCPPFILTEAQMDEMFDKLEKALDKVFAE 471
>pdb|4GRX|A Chain A, Structure Of An Omega-Aminotransferase From Paracoccus
Denitrificans
pdb|4GRX|B Chain B, Structure Of An Omega-Aminotransferase From Paracoccus
Denitrificans
pdb|4GRX|C Chain C, Structure Of An Omega-Aminotransferase From Paracoccus
Denitrificans
pdb|4GRX|D Chain D, Structure Of An Omega-Aminotransferase From Paracoccus
Denitrificans
Length = 465
Score = 90.1 bits (222), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 57/240 (23%), Positives = 104/240 (43%), Gaps = 19/240 (7%)
Query: 40 NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYED 99
I F EP+ G G + P GY + + + +Y++ I+DEV G GRTG D
Sbjct: 228 TIAGFFAEPVMGAGGVIPPAKGYFQAILPILRKYDIPMISDEVICGFGRTGNTWGCLTYD 287
Query: 100 VRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGT-------HGSTYGGNPLACKLAMT 152
PD +I L+ G +P+ AV+ ++ + HG T G+P+ C +A+
Sbjct: 288 FMPDAIISSXNLTAGFFPMGAVILGPDLAKRVEAAVEAIEEFPHGFTASGHPVGCAIALK 347
Query: 153 ALDVILEENMIENAYKMGEIFRSELSSPANX--------XXXXXXXXXXXXXXXINTLIL 204
A+DV++ E + EN ++ F + L A+
Sbjct: 348 AIDVVMNEGLAENVRRLAPRFEAGLKRIADRPNIGEYRGIGFMWALEAVKDKPTKTPFDA 407
Query: 205 SVSAILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINTMAAK 264
++S + + C D GL+ +P+ +I+ L P +TE ++ E + + ++ + A+
Sbjct: 408 NLSVSERIANTCT---DLGLICRPLGQSIV-LCPPFILTEAQMDEMFEKLEKALDKVFAE 463
>pdb|4A6R|A Chain A, Crystal Structure Of The Omega Transaminase From
Chromobacterium Violaceum In The Apo Form, Crystallised
From Polyacrylic Acid
pdb|4A6R|B Chain B, Crystal Structure Of The Omega Transaminase From
Chromobacterium Violaceum In The Apo Form, Crystallised
From Polyacrylic Acid
pdb|4A6T|A Chain A, Crystal Structure Of The Omega Transaminase From
Chromobacterium Violaceum In Complex With Plp
pdb|4A6T|B Chain B, Crystal Structure Of The Omega Transaminase From
Chromobacterium Violaceum In Complex With Plp
pdb|4A6T|C Chain C, Crystal Structure Of The Omega Transaminase From
Chromobacterium Violaceum In Complex With Plp
pdb|4A6T|D Chain D, Crystal Structure Of The Omega Transaminase From
Chromobacterium Violaceum In Complex With Plp
pdb|4A6U|A Chain A, Crystal Structure Of The Omega Transaminase From
Chromobacterium Violaceum In The Apo Form, Crystallised
From Peg 3350
pdb|4A6U|B Chain B, Crystal Structure Of The Omega Transaminase From
Chromobacterium Violaceum In The Apo Form, Crystallised
From Peg 3350
pdb|4A72|A Chain A, Crystal Structure Of The Omega Transaminase From
Chromobacterium Violaceum In A Mixture Of Apo And
Plp-Bound States
pdb|4A72|B Chain B, Crystal Structure Of The Omega Transaminase From
Chromobacterium Violaceum In A Mixture Of Apo And
Plp-Bound States
pdb|4A72|C Chain C, Crystal Structure Of The Omega Transaminase From
Chromobacterium Violaceum In A Mixture Of Apo And
Plp-Bound States
pdb|4A72|D Chain D, Crystal Structure Of The Omega Transaminase From
Chromobacterium Violaceum In A Mixture Of Apo And
Plp-Bound States
pdb|4AH3|A Chain A, Crystal Structure Of The Holo Omega-Transaminase From
Chromobacterium Violaceum
pdb|4AH3|B Chain B, Crystal Structure Of The Holo Omega-Transaminase From
Chromobacterium Violaceum
pdb|4AH3|C Chain C, Crystal Structure Of The Holo Omega-Transaminase From
Chromobacterium Violaceum
pdb|4AH3|D Chain D, Crystal Structure Of The Holo Omega-Transaminase From
Chromobacterium Violaceum
Length = 459
Score = 89.4 bits (220), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 45/129 (34%), Positives = 68/129 (52%), Gaps = 3/129 (2%)
Query: 40 NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYED 99
+ AF+ EPIQG G +VP Y ++ +C +Y+VL +ADEV G GRTG+ +
Sbjct: 219 KVAAFVGEPIQGAGGVIVPPATYWPEIERICRKYDVLLVADEVICGFGRTGEWFGHQHFG 278
Query: 100 VRPDIVILGKALSGGLYPISAVLADDEVMGTLVPG---THGSTYGGNPLACKLAMTALDV 156
+PD+ K LS G PI AV V L+ G HG TY G+P+ +A +
Sbjct: 279 FQPDLFTAAKGLSSGYLPIGAVFVGKRVAEGLIAGGDFNHGFTYSGHPVCAAVAHANVAA 338
Query: 157 ILEENMIEN 165
+ +E +++
Sbjct: 339 LRDEGIVQR 347
>pdb|4ATP|A Chain A, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATP|B Chain B, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATP|C Chain C, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATP|D Chain D, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATP|E Chain E, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATP|F Chain F, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATP|G Chain G, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATP|H Chain H, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATP|I Chain I, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATP|J Chain J, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATP|K Chain K, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATP|L Chain L, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATQ|A Chain A, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
pdb|4ATQ|B Chain B, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
pdb|4ATQ|C Chain C, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
pdb|4ATQ|D Chain D, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
pdb|4ATQ|E Chain E, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
pdb|4ATQ|F Chain F, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
pdb|4ATQ|G Chain G, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
pdb|4ATQ|H Chain H, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
pdb|4ATQ|I Chain I, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
pdb|4ATQ|J Chain J, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
pdb|4ATQ|K Chain K, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
pdb|4ATQ|L Chain L, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
Length = 456
Score = 89.0 bits (219), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 71/233 (30%), Positives = 119/233 (51%), Gaps = 12/233 (5%)
Query: 40 NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYED 99
+ A ++EPIQGE G +VP +G+L + + ++FIADEVQ+G RTG+ A+ +E
Sbjct: 226 QVAAIIIEPIQGEGGFIVPAEGFLPALSEWAKEKGIVFIADEVQSGFCRTGEWFAVDHEG 285
Query: 100 VRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILE 159
V PDI+ + K ++GGL P+SA+ +++ + PG G TYGGNP+AC A+ A+D + +
Sbjct: 286 VVPDIITMAKGIAGGL-PLSAITGRADLLDAVHPGGLGGTYGGNPVACAAALAAIDTMEQ 344
Query: 160 ENMIENAYKMGEIFRSELSSPANXXXXXXXXXXXXXXXXINTLILSV----------SAI 209
++ A + E+ +L A L + +
Sbjct: 345 HDLNGRARHIEELALGKLRELAAELSAGGGSVVGDIRGRGAMLAIELVQPGSKEPNAELT 404
Query: 210 LEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINTMA 262
V C+K + ++T N+IRL P L I+++ L +GL+++ I A
Sbjct: 405 KAVAAACLK-EGVIILTCGTYGNVIRLLPPLVISDELLIDGLEVLAAAIKAHA 456
>pdb|1M0N|A Chain A, Structure Of Dialkylglycine Decarboxylase Complexed With
1- Aminocyclopentanephosphonate
pdb|1M0O|A Chain A, Structure Of Dialkylglycine Decarboxylase Complexed With
1- Amino-1-Methylpropanephosphonate
pdb|1M0P|A Chain A, Structure Of Dialkylglycine Decarboxylase Complexed With
1- Amino-1-Phenylethanephosphonate
pdb|1M0Q|A Chain A, Structure Of Dialkylglycine Decarboxylase Complexed With
S- 1-Aminoethanephosphonate
pdb|1ZC9|A Chain A, The Crystal Structure Of Dialkylglycine Decarboxylase
Complex With Pyridoxamine 5-phosphate
pdb|1ZOB|A Chain A, Crystal Structure Of Dialkylglycine Decarboxylases Bound
With Calcium Ion
pdb|1ZOD|A Chain A, Crystal Structure Of Dialkylglycine Decarboxylase Bound
With Cesium Ion
pdb|1DKA|A Chain A, Dialkylglycine Decarboxylase Structure: Bifunctional
Active Site And Alkali Metal Binding Sites
pdb|2DKB|A Chain A, Dialkylglycine Decarboxylase Structure: Bifunctional
Active Site And Alkali Metal Binding Sites
Length = 433
Score = 85.1 bits (209), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 50/148 (33%), Positives = 77/148 (52%), Gaps = 11/148 (7%)
Query: 36 KSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAI 95
+S+ N+ AF+ EPI G + DGY+ ++ C +L I DE QTG+GRTG + A
Sbjct: 199 QSSGNLAAFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRTGTMFAC 258
Query: 96 HYEDVRPDIVILGKALSGGLYPISAVLADDEV------MGTLVPGTHGSTYGGNPLACKL 149
+ V PDI+ L K L GL P++A++ + +G L TH S +PL +
Sbjct: 259 QRDGVTPDILTLSKTLGAGL-PLAAIVTSAAIEERAHELGYLFYTTHVS----DPLPAAV 313
Query: 150 AMTALDVILEENMIENAYKMGEIFRSEL 177
+ LDV+ + ++ A MG+ R L
Sbjct: 314 GLRVLDVVQRDGLVARANVMGDRLRRGL 341
>pdb|1D7R|A Chain A, Crystal Structure Of The Complex Of 2,2-Dialkylglycine
Decarboxylase With 5pa
pdb|1D7S|A Chain A, Crystal Structure Of The Complex Of 2,2-Dialkylglycine
Decarboxylase With Dcs
pdb|1D7U|A Chain A, Crystal Structure Of The Complex Of 2,2-Dialkylglycine
Decarboxylase With Lcs
pdb|1D7V|A Chain A, Crystal Structure Of The Complex Of 2,2-Dialkylglycine
Decarboxylase With Nma
Length = 433
Score = 84.7 bits (208), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 50/148 (33%), Positives = 77/148 (52%), Gaps = 11/148 (7%)
Query: 36 KSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAI 95
+S+ N+ AF+ EPI G + DGY+ ++ C +L I DE QTG+GRTG + A
Sbjct: 199 QSSGNLAAFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRTGTMFAC 258
Query: 96 HYEDVRPDIVILGKALSGGLYPISAVLADDEV------MGTLVPGTHGSTYGGNPLACKL 149
+ V PDI+ L K L GL P++A++ + +G L TH S +PL +
Sbjct: 259 QRDGVTPDILTLSKTLGAGL-PLAAIVTSAAIEERAHELGYLFYTTHVS----DPLPAAV 313
Query: 150 AMTALDVILEENMIENAYKMGEIFRSEL 177
+ LDV+ + ++ A MG+ R L
Sbjct: 314 GLRVLDVVQRDGLVARANVMGDRLRRGL 341
>pdb|1DGD|A Chain A, An Alkali Metal Ion Size-Dependent Switch In The Active
Site Structure Of Dialkylglycine Decarboxylase
pdb|1DGE|A Chain A, An Alkali Metal Ion Size-Dependent Switch In The Active
Site Structure Of Dialkylglycine Decarboxylase
Length = 432
Score = 84.7 bits (208), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 50/148 (33%), Positives = 77/148 (52%), Gaps = 11/148 (7%)
Query: 36 KSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAI 95
+S+ N+ AF+ EPI G + DGY+ ++ C +L I DE QTG+GRTG + A
Sbjct: 198 QSSGNLAAFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRTGTMFAC 257
Query: 96 HYEDVRPDIVILGKALSGGLYPISAVLADDEV------MGTLVPGTHGSTYGGNPLACKL 149
+ V PDI+ L K L GL P++A++ + +G L TH S +PL +
Sbjct: 258 QRDGVTPDILTLSKTLGAGL-PLAAIVTSAAIEERAHELGYLFYTTHVS----DPLPAAV 312
Query: 150 AMTALDVILEENMIENAYKMGEIFRSEL 177
+ LDV+ + ++ A MG+ R L
Sbjct: 313 GLRVLDVVQRDGLVARANVMGDRLRRGL 340
>pdb|1Z3Z|A Chain A, The Crystal Structure Of A Dgd Mutant: Q52a
Length = 431
Score = 84.7 bits (208), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 50/148 (33%), Positives = 77/148 (52%), Gaps = 11/148 (7%)
Query: 36 KSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAI 95
+S+ N+ AF+ EPI G + DGY+ ++ C +L I DE QTG+GRTG + A
Sbjct: 197 QSSGNLAAFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRTGTMFAC 256
Query: 96 HYEDVRPDIVILGKALSGGLYPISAVLADDEV------MGTLVPGTHGSTYGGNPLACKL 149
+ V PDI+ L K L GL P++A++ + +G L TH S +PL +
Sbjct: 257 QRDGVTPDILTLSKTLGAGL-PLAAIVTSAAIEERAHELGYLFYTTHVS----DPLPAAV 311
Query: 150 AMTALDVILEENMIENAYKMGEIFRSEL 177
+ LDV+ + ++ A MG+ R L
Sbjct: 312 GLRVLDVVQRDGLVARANVMGDRLRRGL 339
>pdb|2JJF|A Chain A, N328a Mutant Of M. Tuberculosis Rv3290c
Length = 449
Score = 84.3 bits (207), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 56/152 (36%), Positives = 74/152 (48%), Gaps = 11/152 (7%)
Query: 32 EAKLKSNP-NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTG 90
A ++ P +I F+ EPIQGE G + +R LC +++ L I DEVQTG G TG
Sbjct: 222 RAAFETRPHDIACFVAEPIQGEGGDRHFRPEFFAAMRELCDEFDALLIFDEVQTGCGLTG 281
Query: 91 KLLAIHYEDVRPDIVILGKALSGGLYPISAVLAD---DEVMGTL--VPGTHGSTYGGNPL 145
A DV PDIV GK + V+A DEV + VP ST+GGN
Sbjct: 282 TAWAYQQLDVAPDIVAFGKKTQ-----VCGVMAGRRVDEVADNVFAVPSRLASTWGGNLT 336
Query: 146 ACKLAMTALDVILEENMIENAYKMGEIFRSEL 177
A L+VI E + E A + G+ R+ L
Sbjct: 337 DMVRARRILEVIEAEGLFERAVQHGKYLRARL 368
>pdb|2CIN|A Chain A, Lysine Aminotransferase From M. Tuberculosis In The
Internal Aldimine Form
pdb|2CJG|A Chain A, Lysine Aminotransferase From M. Tuberculosis In Bound Pmp
Form
pdb|2CJH|A Chain A, Lysine Aminotransferase From M. Tuberculosis In The
Internal Aldimine Form With Bound Substrate 2-
Ketoglutarate
pdb|2JJG|A Chain A, Crystal Structure Of The M. Tuberculosis Lysine-Epsilon
Aminotransferase (Rv3290c) Complexed To An Inhibitor
pdb|2CJD|A Chain A, Lysine Aminotransferase From M. Tuberculosis In External
Aldimine Form
Length = 449
Score = 84.0 bits (206), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 56/152 (36%), Positives = 74/152 (48%), Gaps = 11/152 (7%)
Query: 32 EAKLKSNP-NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTG 90
A ++ P +I F+ EPIQGE G + +R LC +++ L I DEVQTG G TG
Sbjct: 222 RAAFETRPHDIACFVAEPIQGEGGDRHFRPEFFAAMRELCDEFDALLIFDEVQTGCGLTG 281
Query: 91 KLLAIHYEDVRPDIVILGKALSGGLYPISAVLAD---DEVMGTL--VPGTHGSTYGGNPL 145
A DV PDIV GK + V+A DEV + VP ST+GGN
Sbjct: 282 TAWAYQQLDVAPDIVAFGKKTQ-----VCGVMAGRRVDEVADNVFAVPSRLNSTWGGNLT 336
Query: 146 ACKLAMTALDVILEENMIENAYKMGEIFRSEL 177
A L+VI E + E A + G+ R+ L
Sbjct: 337 DMVRARRILEVIEAEGLFERAVQHGKYLRARL 368
>pdb|3DXW|A Chain A, The Crystal Structure Of Alpha-Amino-Epsilon-Caprolactam
Racemase From Achromobacter Obae Complexed With Epsilon
Caprolactam
pdb|3DXW|B Chain B, The Crystal Structure Of Alpha-Amino-Epsilon-Caprolactam
Racemase From Achromobacter Obae Complexed With Epsilon
Caprolactam
Length = 452
Score = 82.8 bits (203), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 72/258 (27%), Positives = 121/258 (46%), Gaps = 12/258 (4%)
Query: 15 PHMPGYNIIPYND--VDALEAKLKSNP--NICAFMVEPIQGEAGAVVPDDGYLKKVRALC 70
P+ P Y P D + L KL + P +I A +EPIQ + G +VP DG+L+K +C
Sbjct: 186 PYRP-YRNDPTGDAILTLLTEKLAAVPAGSIGAAFIEPIQSDGGLIVPPDGFLRKFADIC 244
Query: 71 SQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGT 130
+ +L + DEV+ GL R+G+L +E PDI++L GG P+SAV+A E++
Sbjct: 245 RAHGILVVCDEVKVGLARSGRLHCFEHEGFVPDILVL-GKGLGGGLPLSAVIAPAEIL-D 302
Query: 131 LVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSSPANXXXXXXXX 190
T GNP++ + L+ I +++ A + G + R LS A
Sbjct: 303 CASAFAMQTLHGNPISAAAGLAVLETIDRDDLPAMAERKGRLLRDGLSELAKRHPLIGDI 362
Query: 191 XXXXXXXXINTLILSVS---AILEVYDVCIKMKDAGLVTKPI--SNNIIRLSPALNITEQ 245
+ + S A E + + GLV + + N++ +P L ITE
Sbjct: 363 RGRGLACGMELVCDRQSREPARAETAKLIYRAYQLGLVVYYVGMNGNVLEFTPPLTITET 422
Query: 246 ELREGLDIIINTINTMAA 263
++ + LD++ + ++A
Sbjct: 423 DIHKALDLLDRAFSELSA 440
>pdb|2JJE|A Chain A, Crystal Structure Of T330s Mutant Of Rv3290c From M.
Tuberculosis
Length = 449
Score = 82.8 bits (203), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 55/152 (36%), Positives = 74/152 (48%), Gaps = 11/152 (7%)
Query: 32 EAKLKSNP-NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTG 90
A ++ P +I F+ EPIQGE G + +R LC +++ L I DEVQTG G TG
Sbjct: 222 RAAFETRPHDIACFVAEPIQGEGGDRHFRPEFFAAMRELCDEFDALLIFDEVQTGCGLTG 281
Query: 91 KLLAIHYEDVRPDIVILGKALSGGLYPISAVLAD---DEVMGTL--VPGTHGSTYGGNPL 145
A DV PDIV GK + V+A DEV + VP S++GGN
Sbjct: 282 TAWAYQQLDVAPDIVAFGKKTQ-----VCGVMAGRRVDEVADNVFAVPSRLNSSWGGNLT 336
Query: 146 ACKLAMTALDVILEENMIENAYKMGEIFRSEL 177
A L+VI E + E A + G+ R+ L
Sbjct: 337 DMVRARRILEVIEAEGLFERAVQHGKYLRARL 368
>pdb|2ZUK|A Chain A, The Crystal Structure Of Alpha-Amino-Epsilon-Caprolactam
Racemase From Achromobacter Obae Complexed With Epsilon
Caprolactam (Different Binding Mode)
pdb|2ZUK|B Chain B, The Crystal Structure Of Alpha-Amino-Epsilon-Caprolactam
Racemase From Achromobacter Obae Complexed With Epsilon
Caprolactam (Different Binding Mode)
pdb|3DXV|A Chain A, The Crystal Structure Of Alpha-Amino-Epsilon-Caprolactam
Racemase From Achromobacter Obae
pdb|3DXV|B Chain B, The Crystal Structure Of Alpha-Amino-Epsilon-Caprolactam
Racemase From Achromobacter Obae
Length = 439
Score = 82.8 bits (203), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 72/258 (27%), Positives = 121/258 (46%), Gaps = 12/258 (4%)
Query: 15 PHMPGYNIIPYND--VDALEAKLKSNP--NICAFMVEPIQGEAGAVVPDDGYLKKVRALC 70
P+ P Y P D + L KL + P +I A +EPIQ + G +VP DG+L+K +C
Sbjct: 173 PYRP-YRNDPTGDAILTLLTEKLAAVPAGSIGAAFIEPIQSDGGLIVPPDGFLRKFADIC 231
Query: 71 SQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGT 130
+ +L + DEV+ GL R+G+L +E PDI++L GG P+SAV+A E++
Sbjct: 232 RAHGILVVCDEVKVGLARSGRLHCFEHEGFVPDILVL-GKGLGGGLPLSAVIAPAEIL-D 289
Query: 131 LVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSSPANXXXXXXXX 190
T GNP++ + L+ I +++ A + G + R LS A
Sbjct: 290 CASAFAMQTLHGNPISAAAGLAVLETIDRDDLPAMAERKGRLLRDGLSELAKRHPLIGDI 349
Query: 191 XXXXXXXXINTLILSVS---AILEVYDVCIKMKDAGLVTKPI--SNNIIRLSPALNITEQ 245
+ + S A E + + GLV + + N++ +P L ITE
Sbjct: 350 RGRGLACGMELVCDRQSREPARAETAKLIYRAYQLGLVVYYVGMNGNVLEFTPPLTITET 409
Query: 246 ELREGLDIIINTINTMAA 263
++ + LD++ + ++A
Sbjct: 410 DIHKALDLLDRAFSELSA 427
>pdb|2CFB|A Chain A, Glutamate-1-Semialdehyde 2,1-Aminomutase From
Thermosynechococcus Elongatus
Length = 411
Score = 82.4 bits (202), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 51/146 (34%), Positives = 73/146 (50%), Gaps = 6/146 (4%)
Query: 24 PYNDVDALEAKLKSNPN-ICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEV 82
PYND++A+ + PN I ++EP+ G AG + PD G+L+ +R L QY L + DEV
Sbjct: 166 PYNDLEAVSRLFEQYPNDIAGVILEPVVGNAGFIPPDAGFLEGLRELTKQYGALLVFDEV 225
Query: 83 QTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGT---HGST 139
TG R A V PD+ LGK + GGL P+ A E+M + P T
Sbjct: 226 MTGF-RIAYGGAQEKFGVTPDLTTLGKVIGGGL-PVGAYGGRAEIMKMVAPAGPVYQAGT 283
Query: 140 YGGNPLACKLAMTALDVILEENMIEN 165
GNPLA + L+++ E+
Sbjct: 284 LSGNPLAMTAGIKTLEILSRPGSYEH 309
>pdb|3FCR|A Chain A, Crystal Structure Of Putative Aminotransferase
(Yp_614685.1) From Silicibacter Sp. Tm1040 At 1.80 A
Resolution
Length = 459
Score = 82.0 bits (201), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 46/138 (33%), Positives = 73/138 (52%), Gaps = 8/138 (5%)
Query: 41 ICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDV 100
I AF+ EPI G G V P GY + ++ + +++++L +ADEV TG GR G + +
Sbjct: 221 IAAFIGEPILGTGGIVPPPAGYWEAIQTVLNKHDILLVADEVVTGFGRLGTXFGSDHYGL 280
Query: 101 RPDIV-ILGKALSGGLYPISAVLADDEVMGTLVPGT-------HGSTYGGNPLACKLAMT 152
PDI+ I K L+ P+S + D+V L GT HG TY +P+ +
Sbjct: 281 EPDIITIAXKGLTSAYAPLSGSIVSDKVWKVLEQGTDENGPIGHGWTYSAHPIGAAAGVA 340
Query: 153 ALDVILEENMIENAYKMG 170
L ++ E N++ NA ++G
Sbjct: 341 NLKLLDELNLVSNAGEVG 358
>pdb|2JJH|A Chain A, E243 Mutant Of M. Tuberculosis Rv3290c
Length = 449
Score = 81.6 bits (200), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 55/152 (36%), Positives = 73/152 (48%), Gaps = 11/152 (7%)
Query: 32 EAKLKSNP-NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTG 90
A ++ P +I F+ EPIQG G + +R LC +++ L I DEVQTG G TG
Sbjct: 222 RAAFETRPHDIACFVAEPIQGAGGDRHFRPEFFAAMRELCDEFDALLIFDEVQTGCGLTG 281
Query: 91 KLLAIHYEDVRPDIVILGKALSGGLYPISAVLAD---DEVMGTL--VPGTHGSTYGGNPL 145
A DV PDIV GK + V+A DEV + VP ST+GGN
Sbjct: 282 TAWAYQQLDVAPDIVAFGKKTQ-----VCGVMAGRRVDEVADNVFAVPSRLNSTWGGNLT 336
Query: 146 ACKLAMTALDVILEENMIENAYKMGEIFRSEL 177
A L+VI E + E A + G+ R+ L
Sbjct: 337 DMVRARRILEVIEAEGLFERAVQHGKYLRARL 368
>pdb|3BS8|A Chain A, Crystal Structure Of Glutamate 1-Semialdehyde
Aminotransferase Complexed With
Pyridoxamine-5'-Phosphate From Bacillus Subtilis
Length = 438
Score = 80.5 bits (197), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 54/163 (33%), Positives = 79/163 (48%), Gaps = 7/163 (4%)
Query: 23 IPYNDVDALEAKLKS-NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADE 81
+PYND+++++ + +I +VEP+ G G V P +G+L+ +R + QY L I DE
Sbjct: 190 VPYNDLESVKLAFQQFGEDIAGVIVEPVAGNMGVVPPQEGFLQGLRDITEQYGSLLIFDE 249
Query: 82 VQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGT---HGS 138
V TG R A Y V PD+ LGK + GGL P+ A E+M + P
Sbjct: 250 VMTGF-RVDYNCAQGYFGVTPDLTCLGKVIGGGL-PVGAYGGKAEIMEQIAPSGPIYQAG 307
Query: 139 TYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSSPA 181
T GNPLA + L L + +N K G+ +S A
Sbjct: 308 TLSGNPLAMTAGLETLKQ-LTPDSYKNFIKKGDRLEEGISKAA 349
>pdb|2GSA|A Chain A, Crystal Structure Of Glutamate-1-Semialdehyde Aminomutase
(Aminotransferase, Wild-Type Form)
pdb|2GSA|B Chain B, Crystal Structure Of Glutamate-1-Semialdehyde Aminomutase
(Aminotransferase, Wild-Type Form)
pdb|4GSA|A Chain A, Crystal Structure Of Glutamate-1-semialdehyde Aminomutase
(aminotransferase) Reduced With Cyanoborohydrate
pdb|4GSA|B Chain B, Crystal Structure Of Glutamate-1-semialdehyde Aminomutase
(aminotransferase) Reduced With Cyanoborohydrate
pdb|3GSB|A Chain A, Crystal Structure Of Glutamate-1-Semialdehyde Aminomutase
In Complex With Gabaculine
pdb|3GSB|B Chain B, Crystal Structure Of Glutamate-1-Semialdehyde Aminomutase
In Complex With Gabaculine
Length = 432
Score = 79.7 bits (195), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 49/145 (33%), Positives = 75/145 (51%), Gaps = 6/145 (4%)
Query: 24 PYNDVDALEAKLKSNPN-ICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEV 82
PYND++A++A NP I ++EPI G +G +VPD G+L+ +R + +++ L + DEV
Sbjct: 187 PYNDLEAVKALFAENPGEIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVFDEV 246
Query: 83 QTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGT---HGST 139
TG R V PD+ LGK + GGL P+ A E+M + P T
Sbjct: 247 MTGF-RIAYGGVQEKFGVTPDLTTLGKIIGGGL-PVGAYGGKREIMQLVAPAGPMYQAGT 304
Query: 140 YGGNPLACKLAMTALDVILEENMIE 164
GNPLA + L+++ + E
Sbjct: 305 LSGNPLAMTAGIKTLELLRQPGTYE 329
>pdb|2HOY|A Chain A, Inter-Subunit Signaling In Gsam
pdb|2HOY|B Chain B, Inter-Subunit Signaling In Gsam
pdb|2HOZ|A Chain A, Inter-Subunit Signaling In Gsam
pdb|2HOZ|B Chain B, Inter-Subunit Signaling In Gsam
pdb|2HP1|A Chain A, Inter-Subunit Signaling In Gsam
pdb|2HP1|B Chain B, Inter-Subunit Signaling In Gsam
pdb|2HP2|A Chain A, Inter-Subunit Signaling In Gsam
pdb|2HP2|B Chain B, Inter-Subunit Signaling In Gsam
Length = 432
Score = 79.7 bits (195), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 49/145 (33%), Positives = 75/145 (51%), Gaps = 6/145 (4%)
Query: 24 PYNDVDALEAKLKSNPN-ICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEV 82
PYND++A++A NP I ++EPI G +G +VPD G+L+ +R + +++ L + DEV
Sbjct: 187 PYNDLEAVKALFAENPGEIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVFDEV 246
Query: 83 QTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGT---HGST 139
TG R V PD+ LGK + GGL P+ A E+M + P T
Sbjct: 247 MTGF-RIAYGGVQEKFGVTPDLTTLGKIIGGGL-PVGAYGGKREIMQLVAPAGPMYQAGT 304
Query: 140 YGGNPLACKLAMTALDVILEENMIE 164
GNPLA + L+++ + E
Sbjct: 305 LSGNPLAMTAGIKTLELLRQPGTYE 329
>pdb|3FQ7|A Chain A, Gabaculine Complex Of Gsam
pdb|3FQ7|B Chain B, Gabaculine Complex Of Gsam
pdb|3USF|A Chain A, Crystal Structure Of Dava-4
pdb|3USF|B Chain B, Crystal Structure Of Dava-4
Length = 427
Score = 79.7 bits (195), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 49/145 (33%), Positives = 75/145 (51%), Gaps = 6/145 (4%)
Query: 24 PYNDVDALEAKLKSNPN-ICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEV 82
PYND++A++A NP I ++EPI G +G +VPD G+L+ +R + +++ L + DEV
Sbjct: 182 PYNDLEAVKALFAENPGEIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVFDEV 241
Query: 83 QTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGT---HGST 139
TG R V PD+ LGK + GGL P+ A E+M + P T
Sbjct: 242 MTGF-RIAYGGVQEKFGVTPDLTTLGKIIGGGL-PVGAYGGKREIMQLVAPAGPMYQAGT 299
Query: 140 YGGNPLACKLAMTALDVILEENMIE 164
GNPLA + L+++ + E
Sbjct: 300 LSGNPLAMTAGIKTLELLRQPGTYE 324
>pdb|3FQA|A Chain A, Gabaculien Complex Of Gabaculine Resistant Gsam Version
pdb|3FQA|B Chain B, Gabaculien Complex Of Gabaculine Resistant Gsam Version
Length = 427
Score = 78.6 bits (192), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 49/145 (33%), Positives = 75/145 (51%), Gaps = 6/145 (4%)
Query: 24 PYNDVDALEAKLKSNPN-ICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEV 82
PYND++A++A NP I ++EPI G +G +VPD G+L+ +R + +++ L + DEV
Sbjct: 182 PYNDLEAVKALFAENPGEIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVFDEV 241
Query: 83 QTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGT---HGST 139
TG R V PD+ LGK + GGL P+ A E+M + P T
Sbjct: 242 ITGF-RIAYGGVQEKFGVTPDLTTLGKIIGGGL-PVGAYGGKREIMQLVAPAGPMYQAGT 299
Query: 140 YGGNPLACKLAMTALDVILEENMIE 164
GNPLA + L+++ + E
Sbjct: 300 LSGNPLAMTAGIKTLELLRQPGTYE 324
>pdb|3FQ8|A Chain A, M248i Mutant Of Gsam
pdb|3FQ8|B Chain B, M248i Mutant Of Gsam
Length = 427
Score = 78.6 bits (192), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 49/145 (33%), Positives = 75/145 (51%), Gaps = 6/145 (4%)
Query: 24 PYNDVDALEAKLKSNPN-ICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEV 82
PYND++A++A NP I ++EPI G +G +VPD G+L+ +R + +++ L + DEV
Sbjct: 182 PYNDLEAVKALFAENPGEIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVFDEV 241
Query: 83 QTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGT---HGST 139
TG R V PD+ LGK + GGL P+ A E+M + P T
Sbjct: 242 ITGF-RIAYGGVQEKFGVTPDLTTLGKIIGGGL-PVGAYGGKREIMQLVAPAGPMYQAGT 299
Query: 140 YGGNPLACKLAMTALDVILEENMIE 164
GNPLA + L+++ + E
Sbjct: 300 LSGNPLAMTAGIKTLELLRQPGTYE 324
>pdb|2E7U|A Chain A, Crystal Structure Of Glutamate-1-Semialdehyde
2,1-Aminomutase From Thermus Thermophilus Hb8
Length = 424
Score = 76.6 bits (187), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 58/150 (38%), Positives = 75/150 (50%), Gaps = 8/150 (5%)
Query: 22 IIPYNDVDALEAKLKSN-PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIAD 80
++ YND + L LK I A + EP+ G AG +VP + +LK + Y VL IAD
Sbjct: 180 VLEYNDPEGLREVLKRRGEEIAAIIFEPVVGNAGVLVPTEDFLKALHE-AKAYGVLLIAD 238
Query: 81 EVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVM---GTLVPGTHG 137
EV TG R A ++PD+V LGK L GGL P +A E+M L P
Sbjct: 239 EVMTGF-RLAFGGATELLGLKPDLVTLGKILGGGL-PAAAYAGRREIMEKVAPLGPVYQA 296
Query: 138 STYGGNPLACKLAMTALDVILEENMIENAY 167
T GNPLA + L+ +LEEN AY
Sbjct: 297 GTLSGNPLAMAAGLATLE-LLEENPGYYAY 325
>pdb|2EPJ|A Chain A, Crystal Structure Of Glutamate-1-Semialdehyde
2,1-Aminomutase From Aeropyrum Pernix
pdb|2ZSL|A Chain A, Crystal Structure Of Glutamate-1-Semialdehyde 2,1-
Aminomutase From Aeropyrum Pernix
pdb|2ZSM|A Chain A, Crystal Structure Of Glutamate-1-semialdehyde 2,1-
Aminomutase From Aeropyrum Pernix, Hexagonal Form
pdb|2ZSM|B Chain B, Crystal Structure Of Glutamate-1-semialdehyde 2,1-
Aminomutase From Aeropyrum Pernix, Hexagonal Form
pdb|2ZSM|C Chain C, Crystal Structure Of Glutamate-1-semialdehyde 2,1-
Aminomutase From Aeropyrum Pernix, Hexagonal Form
Length = 434
Score = 73.6 bits (179), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 48/143 (33%), Positives = 71/143 (49%), Gaps = 6/143 (4%)
Query: 22 IIPYNDVDALEAKL-KSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIAD 80
+ PYNDV+ALE + I +VEP+ AG + P +L ++ L + L I D
Sbjct: 184 VTPYNDVEALERVFAEYGDRIAGVIVEPVIANAGVIPPRREFLAALQRLSRESGALLILD 243
Query: 81 EVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGT---HG 137
EV TG R G A Y ++ DI++LGK + GG +P+ AV EVM L P +
Sbjct: 244 EVVTGF-RLGLEGAQGYFNIEGDIIVLGKIIGGG-FPVGAVAGSREVMSLLTPQGKVFNA 301
Query: 138 STYGGNPLACKLAMTALDVILEE 160
T+ +P+ + L + EE
Sbjct: 302 GTFNAHPITMAAGLATLKALEEE 324
>pdb|3L44|A Chain A, Crystal Structure Of Bacillus Anthracis Heml-1, Glutamate
Semialdehyde Aminotransferase
pdb|3L44|B Chain B, Crystal Structure Of Bacillus Anthracis Heml-1, Glutamate
Semialdehyde Aminotransferase
Length = 434
Score = 69.7 bits (169), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 52/156 (33%), Positives = 74/156 (47%), Gaps = 14/156 (8%)
Query: 23 IPYNDVDALEAKL-KSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADE 81
+P+N+V+ L+ L K + A +VEPI G G V P G+L+KV L + L I DE
Sbjct: 184 VPFNNVETLKEALDKWGHEVAAILVEPIVGNFGIVEPKPGFLEKVNELVHEAGALVIYDE 243
Query: 82 VQTGL----GRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEV---MGTLVPG 134
V T G LL V PD+ LG + GGL PI A E+ + L P
Sbjct: 244 VITAFRFXYGGAQDLLG-----VTPDLTALGXVIGGGL-PIGAYGGKKEIXEQVAPLGPA 297
Query: 135 THGSTYGGNPLACKLAMTALDVILEENMIENAYKMG 170
T GNP + + L+V+ +E + E ++G
Sbjct: 298 YQAGTXAGNPASXASGIACLEVLQQEGLYEKLDELG 333
>pdb|3K28|A Chain A, Crystal Structure Of A Glutamate-1-Semialdehyde
Aminotransferase From Bacillus Anthracis With Bound
Pyridoxal 5'phosphate
pdb|3K28|B Chain B, Crystal Structure Of A Glutamate-1-Semialdehyde
Aminotransferase From Bacillus Anthracis With Bound
Pyridoxal 5'phosphate
pdb|3K28|C Chain C, Crystal Structure Of A Glutamate-1-Semialdehyde
Aminotransferase From Bacillus Anthracis With Bound
Pyridoxal 5'phosphate
pdb|3K28|D Chain D, Crystal Structure Of A Glutamate-1-Semialdehyde
Aminotransferase From Bacillus Anthracis With Bound
Pyridoxal 5'phosphate
Length = 429
Score = 68.9 bits (167), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 46/146 (31%), Positives = 68/146 (46%), Gaps = 6/146 (4%)
Query: 23 IPYNDVDALEAKLKS-NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADE 81
+ YND+++++ + +I +VEP+ G G V P G+L+ +R + Q L I DE
Sbjct: 182 VAYNDLESVKYAFEQFGDDIACVIVEPVAGNXGVVPPQPGFLEGLREVTEQNGALLIFDE 241
Query: 82 VQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGT---HGS 138
V TG R Y V PD+ LGK + GGL P+ A E+ + P
Sbjct: 242 VXTGF-RVAYNCGQGYYGVTPDLTCLGKVIGGGL-PVGAYGGKAEIXRQVAPSGPIYQAG 299
Query: 139 TYGGNPLACKLAMTALDVILEENMIE 164
T GNPLA L + E+ +E
Sbjct: 300 TLSGNPLAXAAGYETLVQLTPESYVE 325
>pdb|4E77|A Chain A, 2.0a Crystal Structure Of A Glutamate-1-Semialdehyde
Aminotransferase From Yersinia Pestis Co92
Length = 429
Score = 66.6 bits (161), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 46/144 (31%), Positives = 64/144 (44%), Gaps = 6/144 (4%)
Query: 25 YNDVDALEAKLKSNPN-ICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQ 83
YND+ ++ + P + +VEP+ G + P +L +RALC ++ L I DEV
Sbjct: 184 YNDLASVRQAFEQYPQEVACIIVEPVAGNXNCIPPLPEFLPGLRALCDEFGALLIIDEVX 243
Query: 84 TGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGT---HGSTY 140
TG R A Y V PD+ LGK + GG P+ A EV L P T
Sbjct: 244 TGF-RVALAGAQDYYHVIPDLTCLGKIIGGGX-PVGAFGGRREVXNALAPTGPVYQAGTL 301
Query: 141 GGNPLACKLAMTALDVILEENMIE 164
GNP+A L I + + E
Sbjct: 302 SGNPIAXAAGFACLTEISQVGVYE 325
>pdb|1OHV|A Chain A, 4-aminobutyrate-aminotransferase From Pig
pdb|1OHV|B Chain B, 4-aminobutyrate-aminotransferase From Pig
pdb|1OHV|C Chain C, 4-aminobutyrate-aminotransferase From Pig
pdb|1OHV|D Chain D, 4-aminobutyrate-aminotransferase From Pig
pdb|1OHW|A Chain A, 4-Aminobutyrate-Aminotransferase Inactivated By
Gamma-Vinyl Gaba
pdb|1OHW|B Chain B, 4-Aminobutyrate-Aminotransferase Inactivated By
Gamma-Vinyl Gaba
pdb|1OHW|C Chain C, 4-Aminobutyrate-Aminotransferase Inactivated By
Gamma-Vinyl Gaba
pdb|1OHW|D Chain D, 4-Aminobutyrate-Aminotransferase Inactivated By
Gamma-Vinyl Gaba
pdb|1OHY|A Chain A, 4-Aminobutyrate-Aminotransferase Inactivated By
Gamma-Ethynyl Gaba
pdb|1OHY|B Chain B, 4-Aminobutyrate-Aminotransferase Inactivated By
Gamma-Ethynyl Gaba
pdb|1OHY|C Chain C, 4-Aminobutyrate-Aminotransferase Inactivated By
Gamma-Ethynyl Gaba
pdb|1OHY|D Chain D, 4-Aminobutyrate-Aminotransferase Inactivated By
Gamma-Ethynyl Gaba
Length = 472
Score = 61.6 bits (148), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 65/140 (46%), Gaps = 10/140 (7%)
Query: 36 KSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAI 95
K + +VEPIQ E G D + +K+R + ++ F+ DEVQTG G TGK A
Sbjct: 254 KKKKTVAGIIVEPIQSEGGDNHASDDFFRKLRDISRKHGCAFLVDEVQTGGGSTGKFWAH 313
Query: 96 HYE--DVRPDIVILGKA-LSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMT 152
+ D D++ K ++GG + E P +T+ G+P L
Sbjct: 314 EHWGLDDPADVMTFSKKMMTGGFF-------HKEEFRPNAPYRIFNTWLGDPSKNLLLAE 366
Query: 153 ALDVILEENMIENAYKMGEI 172
+++I E+++ NA G++
Sbjct: 367 VINIIKREDLLSNAAHAGKV 386
>pdb|2CY8|A Chain A, Crystal Structure Of D-Phenylglycine Aminotransferase
(D-Phgat) From Pseudomonas Strutzeri St-201
Length = 453
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/163 (31%), Positives = 80/163 (49%), Gaps = 8/163 (4%)
Query: 22 IIPYNDVDAL-EAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIAD 80
+I +D++ + E +I AF+ EP+ G D +L++ L QY LFI D
Sbjct: 182 LIRPDDIEGMREVFANHGSDIAAFIAEPVGSHFGVTPVSDSFLREGAELARQYGALFILD 241
Query: 81 EVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGT----- 135
EV +G R G DV+PD+ L KA S G P + ++VMG L G+
Sbjct: 242 EVISGF-RVGNHGMQALLDVQPDLTCLAKA-SAGGLPGGILGGREDVMGVLSRGSDRKVL 299
Query: 136 HGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELS 178
H T+ GNP+ A+ A+D ILE+++ +G+ R ++
Sbjct: 300 HQGTFTGNPITAAAAIAAIDTILEDDVCAKINDLGQFAREAMN 342
>pdb|4AO9|A Chain A, Biochemical Properties And Crystal Structure Of A Novel
Beta-phenylalanine Aminotransferase From Variovorax
Paradoxus
pdb|4AO9|B Chain B, Biochemical Properties And Crystal Structure Of A Novel
Beta-phenylalanine Aminotransferase From Variovorax
Paradoxus
pdb|4AOA|A Chain A, Biochemical Properties And Crystal Structure Of A Novel
Beta-phenylalanine Aminotransferase From Variovorax
Paradoxus
pdb|4AOA|B Chain B, Biochemical Properties And Crystal Structure Of A Novel
Beta-phenylalanine Aminotransferase From Variovorax
Paradoxus
Length = 454
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 70/167 (41%), Gaps = 16/167 (9%)
Query: 22 IIPYNDVDALEAKL-KSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIAD 80
++PYND A++ + P I +VEP+QG +G + +L+ +R +Q L + D
Sbjct: 201 VLPYNDAQTARAQIERHGPEIAVVLVEPMQGASGCIPGQPDFLQALRESATQVGALLVFD 260
Query: 81 EVQTGL----GRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGT- 135
EV T G KL +R D+ LGK + GG+ A +VM P T
Sbjct: 261 EVMTSRLAPHGLANKL------GIRSDLTTLGKYIGGGM-SFGAFGGRADVMALFDPRTG 313
Query: 136 ---HGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSS 179
H T+ N + L + + GE R+ L++
Sbjct: 314 PLAHSGTFNNNVMTMAAGYAGLTKLFTPEAAGALAERGEALRARLNA 360
>pdb|4A0G|A Chain A, Structure Of Bifunctional Dapa Aminotransferase-Dtb
Synthetase From Arabidopsis Thaliana In Its Apo Form.
pdb|4A0G|B Chain B, Structure Of Bifunctional Dapa Aminotransferase-Dtb
Synthetase From Arabidopsis Thaliana In Its Apo Form.
pdb|4A0G|C Chain C, Structure Of Bifunctional Dapa Aminotransferase-Dtb
Synthetase From Arabidopsis Thaliana In Its Apo Form.
pdb|4A0G|D Chain D, Structure Of Bifunctional Dapa Aminotransferase-Dtb
Synthetase From Arabidopsis Thaliana In Its Apo Form.
pdb|4A0H|A Chain A, Structure Of Bifunctional Dapa Aminotransferase-Dtb
Synthetase From Arabidopsis Thaliana Bound To 7-Keto
8-Amino Pelargonic Acid (Kapa)
pdb|4A0H|B Chain B, Structure Of Bifunctional Dapa Aminotransferase-Dtb
Synthetase From Arabidopsis Thaliana Bound To 7-Keto
8-Amino Pelargonic Acid (Kapa)
pdb|4A0R|A Chain A, Structure Of Bifunctional Dapa Aminotransferase-Dtb
Synthetase From Arabidopsis Thaliana Bound To
Dethiobiotin (Dtb).
pdb|4A0R|B Chain B, Structure Of Bifunctional Dapa Aminotransferase-Dtb
Synthetase From Arabidopsis Thaliana Bound To
Dethiobiotin (Dtb)
Length = 831
Score = 57.0 bits (136), Expect = 1e-08, Method: Composition-based stats.
Identities = 37/147 (25%), Positives = 62/147 (42%), Gaps = 7/147 (4%)
Query: 35 LKSNPNICAFMVEP-IQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLL 93
++ + ++ A ++EP I G G + D + + + C + I DEV TG R G
Sbjct: 589 VRQSAHVGALIIEPVIHGAGGMHMVDPLFQRVLVNECRNRKIPVIFDEVFTGFWRLGVET 648
Query: 94 AIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGT------HGSTYGGNPLAC 147
+PDI K L+GG+ P++ LA D V + + HG +Y + + C
Sbjct: 649 TTELLGCKPDIACFAKLLTGGMVPLAVTLATDAVFDSFSGDSKLKALLHGHSYSAHAMGC 708
Query: 148 KLAMTALDVILEENMIENAYKMGEIFR 174
A A+ + N G+ R
Sbjct: 709 ATAAKAIQWFKDPETNHNITSQGKTLR 735
>pdb|4A0F|A Chain A, Structure Of Selenomethionine Substituted Bifunctional
Dapa Aminotransferase-Dethiobiotin Synthetase From
Arabidopsis Thaliana In Its Apo Form.
pdb|4A0F|B Chain B, Structure Of Selenomethionine Substituted Bifunctional
Dapa Aminotransferase-Dethiobiotin Synthetase From
Arabidopsis Thaliana In Its Apo Form
Length = 831
Score = 53.9 bits (128), Expect = 9e-08, Method: Composition-based stats.
Identities = 37/147 (25%), Positives = 59/147 (40%), Gaps = 7/147 (4%)
Query: 35 LKSNPNICAFMVEP-IQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLL 93
++ + ++ A ++EP I G G D + + + C + I DEV TG R G
Sbjct: 589 VRQSAHVGALIIEPVIHGAGGXHXVDPLFQRVLVNECRNRKIPVIFDEVFTGFWRLGVET 648
Query: 94 AIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGT------HGSTYGGNPLAC 147
+PDI K L+GG P++ LA D V + + HG +Y + C
Sbjct: 649 TTELLGCKPDIACFAKLLTGGXVPLAVTLATDAVFDSFSGDSKLKALLHGHSYSAHAXGC 708
Query: 148 KLAMTALDVILEENMIENAYKMGEIFR 174
A A+ + N G+ R
Sbjct: 709 ATAAKAIQWFKDPETNHNITSQGKTLR 735
>pdb|2YKU|A Chain A, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|2YKU|B Chain B, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|2YKU|C Chain C, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|2YKV|A Chain A, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|2YKV|B Chain B, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|2YKV|C Chain C, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|2YKX|A Chain A, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|2YKX|B Chain B, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|2YKX|C Chain C, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|2YKY|A Chain A, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|2YKY|B Chain B, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|2YKY|C Chain C, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|4AO4|A Chain A, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|4AO4|B Chain B, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|4AO4|C Chain C, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
Length = 465
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/163 (28%), Positives = 68/163 (41%), Gaps = 15/163 (9%)
Query: 25 YNDVDALEAKLKSNPNICA-FMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQ 83
YNDV+ LK + + CA +VEP+ G G V + +L +RA S+ L I DEV
Sbjct: 217 YNDVEGTADLLKRHGHDCAAILVEPMLGAGGCVPAERAFLDLLRAEASRCGALLIFDEVM 276
Query: 84 TGL---GRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPG-----T 135
T G ++L I D+ LGK + GG+ A ++M P
Sbjct: 277 TSRLSGGGAQEMLGI-----SADLTTLGKYIGGGM-SFGAFGGRRDLMERFDPARDGAFA 330
Query: 136 HGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELS 178
H T+ N L AL I + G+ FR+ L+
Sbjct: 331 HAGTFNNNILTMSAGHAALTQIYTRQAASDLSASGDRFRANLN 373
>pdb|2EGY|A Chain A, Crystal Structure Of Lysn, Alpha-Aminoadipate
Aminotransferase (Substrate Free Form), From Thermus
Thermophilus Hb27
pdb|2EGY|B Chain B, Crystal Structure Of Lysn, Alpha-Aminoadipate
Aminotransferase (Substrate Free Form), From Thermus
Thermophilus Hb27
pdb|2EGY|C Chain C, Crystal Structure Of Lysn, Alpha-Aminoadipate
Aminotransferase (Substrate Free Form), From Thermus
Thermophilus Hb27
pdb|2EGY|D Chain D, Crystal Structure Of Lysn, Alpha-Aminoadipate
Aminotransferase (Substrate Free Form), From Thermus
Thermophilus Hb27
pdb|2ZP7|C Chain C, Crystal Structure Of Lysn, Alpha-Aminoadipate
Aminotransferase (Leucine Complex), From Thermus
Thermophilus Hb27
pdb|2ZP7|D Chain D, Crystal Structure Of Lysn, Alpha-Aminoadipate
Aminotransferase (Leucine Complex), From Thermus
Thermophilus Hb27
pdb|2ZP7|F Chain F, Crystal Structure Of Lysn, Alpha-Aminoadipate
Aminotransferase (Leucine Complex), From Thermus
Thermophilus Hb27
pdb|3CBF|A Chain A, Crystal Structure Of Lysn, Alpha-Aminoadipate
Aminotransferase, From Thermus Thermophilus Hb27
pdb|3CBF|B Chain B, Crystal Structure Of Lysn, Alpha-Aminoadipate
Aminotransferase, From Thermus Thermophilus Hb27
pdb|2Z1Y|A Chain A, Crystal Structure Of Lysn, Alpha-Aminoadipate
Aminotransferase (Complexed With
N-(5'-Phosphopyridoxyl)-L-Leucine), From Thermus
Thermophilus Hb27
pdb|2Z1Y|B Chain B, Crystal Structure Of Lysn, Alpha-Aminoadipate
Aminotransferase (Complexed With
N-(5'-Phosphopyridoxyl)-L-Leucine), From Thermus
Thermophilus Hb27
pdb|2ZP7|A Chain A, Crystal Structure Of Lysn, Alpha-Aminoadipate
Aminotransferase (Leucine Complex), From Thermus
Thermophilus Hb27
pdb|2ZP7|B Chain B, Crystal Structure Of Lysn, Alpha-Aminoadipate
Aminotransferase (Leucine Complex), From Thermus
Thermophilus Hb27
pdb|2ZP7|E Chain E, Crystal Structure Of Lysn, Alpha-Aminoadipate
Aminotransferase (Leucine Complex), From Thermus
Thermophilus Hb27
pdb|2ZYJ|A Chain A, Crystal Structure Of Lysn, Alpha-Aminoadipate
Aminotransferase (Complexed With
N-(5'-Phosphopyridoxyl)-L-Glutamate), From Thermus
Thermophilus Hb27
pdb|2ZYJ|B Chain B, Crystal Structure Of Lysn, Alpha-Aminoadipate
Aminotransferase (Complexed With
N-(5'-Phosphopyridoxyl)-L-Glutamate), From Thermus
Thermophilus Hb27
Length = 397
Score = 30.8 bits (68), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 36/157 (22%), Positives = 67/157 (42%), Gaps = 13/157 (8%)
Query: 27 DVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIAD----EV 82
D+DALE LK +++ Q G + P K++ + + ++ + D E+
Sbjct: 150 DLDALEEVLKRERPRFLYLIPSFQNPTGGLTPLPAR-KRLLQMVMERGLVVVEDDAYREL 208
Query: 83 QTGLGRTGKLLAIHYEDVRPDIVILG---KALSGGLYPISAVLADDEVMGTLVPGTHGST 139
G R L + E P ++ LG K LS GL ++ +A E + LV G+
Sbjct: 209 YFGEARLPSLFELAREAGYPGVIYLGSFSKVLSPGLR-VAFAVAHPEALQKLVQAKQGAD 267
Query: 140 YGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSE 176
P+ ++ + L L+E E ++ ++R +
Sbjct: 268 L-HTPMLNQMLVHEL---LKEGFSERLERVRRVYREK 300
>pdb|3T32|A Chain A, Crystal Structure Of A Putative C-S Lyase From Bacillus
Anthracis
pdb|3T32|B Chain B, Crystal Structure Of A Putative C-S Lyase From Bacillus
Anthracis
Length = 383
Score = 29.3 bits (64), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 19/24 (79%)
Query: 63 LKKVRALCSQYNVLFIADEVQTGL 86
L K+ +LC++YNV+ +ADE+ + +
Sbjct: 178 LTKLGSLCTKYNVIVVADEIHSDI 201
>pdb|2HGC|A Chain A, Solution Nmr Structure Of The Yjcq Protein From Bacillus
Subtilis. Northeast Structural Genomics Target Sr346
Length = 102
Score = 28.1 bits (61), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 80 DEVQTGLGRTGKLLAIHYEDVRPDIVILGKALS 112
D+ L R G ++ +HY D RP + LG L+
Sbjct: 34 DDAVNFLKREGYIIGVHYSDDRPHLYKLGPELT 66
>pdb|4H6V|A Chain A, Structure Of Patellamide Maturation Protease Pata
Length = 306
Score = 27.3 bits (59), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 10/20 (50%), Positives = 14/20 (70%)
Query: 60 DGYLKKVRALCSQYNVLFIA 79
DG+L+ +LC Q NVL +A
Sbjct: 133 DGWLENAVSLCRQNNVLLVA 152
>pdb|3ZXX|A Chain A, Structure Of Self-cleaved Protease Domain Of Pata
Length = 307
Score = 27.3 bits (59), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 10/20 (50%), Positives = 14/20 (70%)
Query: 60 DGYLKKVRALCSQYNVLFIA 79
DG+L+ +LC Q NVL +A
Sbjct: 142 DGWLENAVSLCRQNNVLLVA 161
>pdb|3ZXY|A Chain A, Structure Of S218a Mutant Of The Protease Domain Of Pata
Length = 282
Score = 27.3 bits (59), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 10/20 (50%), Positives = 14/20 (70%)
Query: 60 DGYLKKVRALCSQYNVLFIA 79
DG+L+ +LC Q NVL +A
Sbjct: 123 DGWLENAVSLCRQNNVLLVA 142
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.137 0.389
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,453,693
Number of Sequences: 62578
Number of extensions: 292203
Number of successful extensions: 951
Number of sequences better than 100.0: 84
Number of HSP's better than 100.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 745
Number of HSP's gapped (non-prelim): 97
length of query: 266
length of database: 14,973,337
effective HSP length: 97
effective length of query: 169
effective length of database: 8,903,271
effective search space: 1504652799
effective search space used: 1504652799
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.9 bits)