Query psy6547
Match_columns 266
No_of_seqs 124 out of 1339
Neff 9.8
Searched_HMMs 46136
Date Fri Aug 16 20:47:26 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6547.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/6547hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG4992 ArgD Ornithine/acetylo 100.0 4.7E-49 1E-53 330.1 25.6 254 1-264 147-402 (404)
2 KOG1402|consensus 100.0 1.6E-43 3.5E-48 285.3 21.9 253 1-259 168-426 (427)
3 COG0160 GabT 4-aminobutyrate a 100.0 4.7E-42 1E-46 295.8 26.0 254 1-261 161-446 (447)
4 TIGR03372 putres_am_tran putre 100.0 6.5E-40 1.4E-44 288.1 26.0 251 1-258 181-442 (442)
5 PRK11522 putrescine--2-oxoglut 100.0 9E-40 2E-44 289.0 26.8 254 2-262 189-453 (459)
6 TIGR03246 arg_catab_astC succi 100.0 1.6E-39 3.5E-44 284.6 27.0 252 2-261 143-396 (397)
7 COG0161 BioA Adenosylmethionin 100.0 2.7E-39 5.9E-44 277.1 25.2 259 1-264 155-447 (449)
8 PRK12381 bifunctional succinyl 100.0 8.9E-39 1.9E-43 280.7 26.7 255 2-264 147-403 (406)
9 PLN00144 acetylornithine trans 100.0 9.6E-39 2.1E-43 277.8 26.3 250 2-261 130-381 (382)
10 PRK06943 adenosylmethionine--8 100.0 1.2E-38 2.7E-43 281.8 27.1 258 1-263 164-449 (453)
11 PRK05965 hypothetical protein; 100.0 1.1E-38 2.4E-43 282.8 26.0 256 2-262 158-449 (459)
12 PRK04612 argD acetylornithine 100.0 2E-38 4.4E-43 277.4 27.1 256 2-264 150-407 (408)
13 PRK07482 hypothetical protein; 100.0 3.5E-38 7.5E-43 279.7 27.3 257 2-262 162-456 (461)
14 PRK04073 rocD ornithine--oxo-a 100.0 3.6E-38 7.9E-43 276.3 26.5 246 2-258 150-395 (396)
15 PRK01278 argD acetylornithine 100.0 4.5E-38 9.8E-43 275.3 26.8 247 3-260 140-388 (389)
16 PRK07678 aminotransferase; Val 100.0 4.2E-38 9.1E-43 278.7 26.7 256 2-261 156-450 (451)
17 PRK08742 adenosylmethionine--8 100.0 7.9E-38 1.7E-42 277.3 27.3 256 1-262 179-469 (472)
18 PRK06938 diaminobutyrate--2-ox 100.0 5.9E-38 1.3E-42 278.0 26.2 255 2-262 172-462 (464)
19 PRK07030 adenosylmethionine--8 100.0 7.3E-38 1.6E-42 277.6 26.6 254 2-261 158-447 (466)
20 PLN02760 4-aminobutyrate:pyruv 100.0 9.4E-38 2E-42 278.6 27.2 254 2-261 202-492 (504)
21 PRK03244 argD acetylornithine 100.0 1.4E-37 3.1E-42 272.9 27.0 244 7-261 152-395 (398)
22 PLN02624 ornithine-delta-amino 100.0 1.5E-37 3.2E-42 276.8 27.1 256 1-261 184-445 (474)
23 PRK03715 argD acetylornithine 100.0 1.1E-37 2.3E-42 272.1 25.5 249 2-261 143-394 (395)
24 PRK07481 hypothetical protein; 100.0 3.4E-37 7.5E-42 272.7 26.8 257 1-262 154-447 (449)
25 PRK07986 adenosylmethionine--8 100.0 3.4E-37 7.4E-42 270.6 26.3 247 8-261 160-424 (428)
26 PRK05093 argD bifunctional N-s 100.0 4.3E-37 9.2E-42 270.1 27.0 251 4-261 150-401 (403)
27 TIGR02407 ectoine_ectB diamino 100.0 2.4E-37 5.2E-42 271.5 25.2 252 2-260 144-412 (412)
28 PRK07483 hypothetical protein; 100.0 4.1E-37 8.9E-42 271.6 26.8 259 1-263 140-440 (443)
29 PRK06105 aminotransferase; Pro 100.0 5.4E-37 1.2E-41 272.1 27.5 255 2-262 160-451 (460)
30 PRK04013 argD acetylornithine/ 100.0 4.3E-37 9.3E-42 264.4 25.5 239 1-263 125-363 (364)
31 PRK06916 adenosylmethionine--8 100.0 4E-37 8.7E-42 272.9 25.9 256 1-262 166-457 (460)
32 PRK13360 omega amino acid--pyr 100.0 7.9E-37 1.7E-41 269.7 27.0 255 1-261 156-441 (442)
33 PRK06931 diaminobutyrate--2-ox 100.0 4.6E-37 9.9E-42 272.2 25.6 256 2-263 166-457 (459)
34 PRK06173 adenosylmethionine--8 100.0 5.7E-37 1.2E-41 269.5 25.7 249 7-262 161-427 (429)
35 PRK07036 hypothetical protein; 100.0 1.2E-36 2.6E-41 270.0 28.0 255 2-262 163-454 (466)
36 PRK08593 4-aminobutyrate amino 100.0 8E-37 1.7E-41 270.1 26.6 256 3-263 149-432 (445)
37 PRK06058 4-aminobutyrate amino 100.0 8E-37 1.7E-41 270.5 26.5 246 9-260 170-442 (443)
38 PRK06082 4-aminobutyrate amino 100.0 1.2E-36 2.6E-41 269.6 27.5 256 2-262 175-453 (459)
39 PRK07495 4-aminobutyrate amino 100.0 1.6E-36 3.5E-41 266.7 28.0 250 8-262 153-423 (425)
40 PRK07480 putative aminotransfe 100.0 1.4E-36 2.9E-41 269.0 27.4 256 2-263 162-451 (456)
41 PRK09264 diaminobutyrate--2-ox 100.0 1E-36 2.2E-41 268.7 26.3 255 2-264 148-420 (425)
42 TIGR00709 dat 2,4-diaminobutyr 100.0 1.3E-36 2.7E-41 269.0 26.9 256 2-263 147-438 (442)
43 PRK09221 beta alanine--pyruvat 100.0 1.3E-36 2.8E-41 268.6 26.7 255 1-261 159-444 (445)
44 PRK08117 4-aminobutyrate amino 100.0 1.9E-36 4.1E-41 267.9 26.7 251 7-263 154-432 (433)
45 PRK06062 hypothetical protein; 100.0 1.9E-36 4E-41 268.0 26.6 230 28-262 200-447 (451)
46 PTZ00125 ornithine aminotransf 100.0 2.7E-36 5.8E-41 265.1 27.4 252 9-264 148-399 (400)
47 PRK06541 hypothetical protein; 100.0 3E-36 6.5E-41 267.1 27.6 257 1-261 162-456 (460)
48 TIGR01885 Orn_aminotrans ornit 100.0 2.2E-36 4.8E-41 265.5 26.5 251 3-258 148-400 (401)
49 PRK09792 4-aminobutyrate trans 100.0 1.6E-36 3.4E-41 267.0 25.4 247 8-259 153-420 (421)
50 PRK06777 4-aminobutyrate amino 100.0 3.2E-36 6.9E-41 265.1 26.8 252 3-259 147-420 (421)
51 PRK02936 argD acetylornithine 100.0 2.6E-36 5.7E-41 263.2 26.0 245 3-258 132-377 (377)
52 PRK05639 4-aminobutyrate amino 100.0 3.2E-36 6.9E-41 266.5 26.3 249 8-262 165-445 (457)
53 PRK05630 adenosylmethionine--8 100.0 3.2E-36 6.9E-41 264.4 25.4 244 7-260 157-420 (422)
54 TIGR00700 GABAtrnsam 4-aminobu 100.0 4.9E-36 1.1E-40 264.2 26.2 247 8-259 146-419 (420)
55 PRK05964 adenosylmethionine--8 100.0 5.5E-36 1.2E-40 264.3 26.3 254 2-261 153-423 (423)
56 PRK00854 rocD ornithine--oxo-a 100.0 8.6E-36 1.9E-40 261.9 26.8 249 3-259 152-400 (401)
57 PRK02627 acetylornithine amino 100.0 9.1E-36 2E-40 261.4 26.7 246 5-261 149-395 (396)
58 PRK12403 putative aminotransfe 100.0 1.8E-35 3.8E-40 262.4 27.6 256 2-263 166-455 (460)
59 PRK06917 hypothetical protein; 100.0 1.8E-35 4E-40 261.4 26.4 258 2-263 142-440 (447)
60 PRK08360 4-aminobutyrate amino 100.0 3.1E-35 6.7E-40 259.7 27.4 250 9-264 154-430 (443)
61 PRK06918 4-aminobutyrate amino 100.0 1.5E-34 3.3E-39 256.6 27.5 257 2-263 160-446 (451)
62 PRK05769 4-aminobutyrate amino 100.0 1.3E-34 2.7E-39 255.8 26.7 248 7-261 166-440 (441)
63 KOG1404|consensus 100.0 9.3E-35 2E-39 239.8 19.5 248 1-254 153-432 (442)
64 PRK04260 acetylornithine amino 100.0 5.5E-34 1.2E-38 248.3 25.6 239 8-257 135-374 (375)
65 TIGR00508 bioA adenosylmethion 100.0 9.4E-34 2E-38 249.5 26.0 226 27-260 193-426 (427)
66 cd00610 OAT_like Acetyl ornith 100.0 1.1E-33 2.3E-38 249.6 25.5 247 7-258 146-413 (413)
67 COG0001 HemL Glutamate-1-semia 100.0 1.2E-33 2.5E-38 239.8 24.1 249 7-262 166-430 (432)
68 KOG1401|consensus 100.0 4.3E-34 9.4E-39 237.4 20.5 252 1-261 166-431 (433)
69 PRK06148 hypothetical protein; 100.0 2.3E-33 5E-38 268.3 27.1 228 29-261 769-1011(1013)
70 TIGR00699 GABAtrns_euk 4-amino 100.0 1.9E-33 4.1E-38 247.7 23.8 219 27-258 237-464 (464)
71 PRK12389 glutamate-1-semialdeh 100.0 3.8E-33 8.2E-38 246.1 25.6 238 15-260 174-427 (428)
72 PLN02974 adenosylmethionine-8- 100.0 2.5E-33 5.5E-38 259.9 25.0 225 29-258 567-816 (817)
73 TIGR00707 argD acetylornithine 100.0 5.2E-33 1.1E-37 242.6 25.0 234 12-257 144-378 (379)
74 PRK00615 glutamate-1-semialdeh 100.0 1.3E-32 2.7E-37 241.9 26.0 241 14-261 174-429 (433)
75 PLN02482 glutamate-1-semialdeh 100.0 8.1E-33 1.8E-37 245.0 24.7 235 18-260 223-473 (474)
76 TIGR00713 hemL glutamate-1-sem 100.0 7.3E-33 1.6E-37 244.8 24.3 236 18-260 172-422 (423)
77 PRK08297 L-lysine aminotransfe 100.0 4.7E-33 1E-37 245.8 22.5 225 27-261 211-442 (443)
78 PRK08088 4-aminobutyrate amino 100.0 3E-32 6.6E-37 240.6 27.1 248 9-261 155-424 (425)
79 PRK06149 hypothetical protein; 100.0 1.4E-32 3.1E-37 262.7 26.8 227 29-260 729-970 (972)
80 PRK07046 aminotransferase; Val 100.0 5.7E-32 1.2E-36 239.2 25.6 236 17-262 196-452 (453)
81 PRK00062 glutamate-1-semialdeh 100.0 7.9E-32 1.7E-36 237.8 22.5 237 18-261 174-425 (426)
82 TIGR03251 LAT_fam L-lysine 6-t 100.0 2.8E-31 6.1E-36 234.2 23.0 219 27-256 204-430 (431)
83 PF00202 Aminotran_3: Aminotra 100.0 1E-31 2.2E-36 230.1 15.5 198 2-205 127-338 (339)
84 PRK06209 glutamate-1-semialdeh 100.0 1.6E-27 3.4E-32 210.4 22.9 228 19-262 165-407 (431)
85 COG0436 Aspartate/tyrosine/aro 100.0 6.7E-28 1.5E-32 209.7 16.0 243 5-261 122-392 (393)
86 PLN02822 serine palmitoyltrans 99.9 1.6E-25 3.4E-30 200.0 21.8 235 15-263 212-480 (481)
87 KOG1403|consensus 99.9 1.7E-26 3.6E-31 185.2 13.5 227 29-261 194-438 (452)
88 PLN03227 serine palmitoyltrans 99.9 5.8E-25 1.3E-29 192.1 22.0 238 17-262 103-384 (392)
89 COG1167 ARO8 Transcriptional r 99.9 2.1E-25 4.5E-30 198.1 18.2 249 4-262 187-457 (459)
90 PRK09064 5-aminolevulinate syn 99.9 1.1E-24 2.4E-29 191.9 22.7 227 17-261 153-398 (407)
91 KOG1405|consensus 99.9 5E-25 1.1E-29 180.1 16.8 220 28-260 255-483 (484)
92 PLN02955 8-amino-7-oxononanoat 99.9 1.3E-24 2.9E-29 190.1 20.3 221 18-262 226-463 (476)
93 PRK07324 transaminase; Validat 99.9 7.3E-25 1.6E-29 190.7 17.6 234 14-261 122-371 (373)
94 TIGR01821 5aminolev_synth 5-am 99.9 5.7E-24 1.2E-28 187.1 23.1 227 17-261 152-397 (402)
95 PRK13393 5-aminolevulinate syn 99.9 6.5E-24 1.4E-28 186.9 22.8 227 17-261 152-397 (406)
96 COG0156 BioF 7-keto-8-aminopel 99.9 5E-24 1.1E-28 182.4 20.9 226 14-257 141-387 (388)
97 PRK07682 hypothetical protein; 99.9 1.6E-24 3.5E-29 189.1 17.4 234 13-260 122-376 (378)
98 PLN00175 aminotransferase fami 99.9 1.4E-24 3.1E-29 191.1 16.9 235 12-259 155-412 (413)
99 PRK06207 aspartate aminotransf 99.9 3.3E-24 7.2E-29 188.5 18.2 243 6-261 136-403 (405)
100 PRK07681 aspartate aminotransf 99.9 2.5E-24 5.4E-29 189.1 17.4 237 5-256 126-384 (399)
101 PRK06108 aspartate aminotransf 99.9 3.3E-24 7.2E-29 187.3 17.5 236 10-259 122-381 (382)
102 PRK05957 aspartate aminotransf 99.9 5.5E-24 1.2E-28 186.3 18.0 239 13-263 130-388 (389)
103 PRK06348 aspartate aminotransf 99.9 9.1E-24 2E-28 184.7 17.0 232 13-257 130-382 (384)
104 PRK06225 aspartate aminotransf 99.9 1.5E-23 3.2E-28 183.2 17.9 234 15-262 126-378 (380)
105 PRK15481 transcriptional regul 99.9 7.6E-24 1.6E-28 187.8 15.9 238 6-259 175-430 (431)
106 PRK13392 5-aminolevulinate syn 99.9 1.1E-22 2.4E-27 179.3 22.7 228 16-261 152-398 (410)
107 PRK07366 succinyldiaminopimela 99.9 2E-23 4.4E-28 182.8 17.6 240 5-257 125-387 (388)
108 PRK09276 LL-diaminopimelate am 99.9 2.2E-23 4.7E-28 182.4 17.5 235 7-256 128-384 (385)
109 TIGR03540 DapC_direct LL-diami 99.9 1.9E-23 4.1E-28 182.7 16.7 236 6-256 125-382 (383)
110 PRK07505 hypothetical protein; 99.9 9.2E-23 2E-27 179.3 20.8 222 17-260 158-399 (402)
111 PRK09147 succinyldiaminopimela 99.9 3E-23 6.4E-28 182.2 17.4 235 7-259 128-395 (396)
112 PRK09082 methionine aminotrans 99.9 2.1E-23 4.6E-28 182.5 16.3 236 8-256 127-385 (386)
113 PRK07179 hypothetical protein; 99.9 3.2E-22 7E-27 176.2 23.7 227 15-261 157-399 (407)
114 TIGR03537 DapC succinyldiamino 99.9 4.1E-23 8.8E-28 178.4 17.3 237 5-256 96-349 (350)
115 PRK07309 aromatic amino acid a 99.9 5.7E-23 1.2E-27 180.0 18.2 241 11-262 130-390 (391)
116 PRK08068 transaminase; Reviewe 99.9 4.4E-23 9.6E-28 180.7 17.4 233 9-256 131-385 (389)
117 PRK05942 aspartate aminotransf 99.9 6.1E-23 1.3E-27 180.1 18.2 229 13-256 138-388 (394)
118 PRK06939 2-amino-3-ketobutyrat 99.9 1.4E-22 3E-27 177.9 20.2 237 8-261 138-394 (397)
119 PRK09148 aminotransferase; Val 99.9 6.3E-23 1.4E-27 180.5 17.6 247 5-262 125-392 (405)
120 PRK06425 histidinol-phosphate 99.9 7.1E-23 1.5E-27 175.6 17.0 231 7-258 90-331 (332)
121 PRK06290 aspartate aminotransf 99.9 3.8E-23 8.3E-28 181.8 15.6 241 11-262 145-407 (410)
122 PRK02610 histidinol-phosphate 99.9 7.4E-23 1.6E-27 178.3 16.9 233 10-261 130-372 (374)
123 PRK08912 hypothetical protein; 99.9 9.3E-23 2E-27 178.5 17.2 242 6-260 121-386 (387)
124 PRK08175 aminotransferase; Val 99.9 1.6E-22 3.4E-27 177.5 18.6 240 10-260 129-389 (395)
125 PRK05958 8-amino-7-oxononanoat 99.9 2.8E-22 6.1E-27 175.2 20.2 227 14-257 141-384 (385)
126 TIGR01822 2am3keto_CoA 2-amino 99.9 3.4E-22 7.4E-27 175.3 20.4 229 16-261 142-390 (393)
127 PRK05764 aspartate aminotransf 99.9 2.1E-22 4.6E-27 176.7 19.0 237 13-261 132-392 (393)
128 PRK08153 histidinol-phosphate 99.9 1.2E-22 2.5E-27 176.7 17.2 238 7-262 119-367 (369)
129 PRK07777 aminotransferase; Val 99.9 9.8E-23 2.1E-27 178.4 16.8 232 15-259 128-385 (387)
130 PRK01533 histidinol-phosphate 99.9 5.7E-23 1.2E-27 178.3 15.1 229 10-262 119-357 (366)
131 PLN02483 serine palmitoyltrans 99.9 9.6E-22 2.1E-26 176.0 23.2 232 13-261 202-467 (489)
132 PRK03317 histidinol-phosphate 99.9 2.2E-22 4.8E-27 175.0 18.7 227 13-262 129-366 (368)
133 TIGR01825 gly_Cac_T_rel pyrido 99.9 9.5E-22 2.1E-26 172.0 22.8 228 16-261 137-382 (385)
134 PRK07683 aminotransferase A; V 99.9 2.2E-22 4.7E-27 176.1 18.4 237 11-261 128-384 (387)
135 PRK08636 aspartate aminotransf 99.9 1.7E-22 3.7E-27 177.7 17.7 247 4-261 127-401 (403)
136 PRK08960 hypothetical protein; 99.9 4.3E-22 9.3E-27 174.3 19.3 239 6-259 126-386 (387)
137 PRK12414 putative aminotransfe 99.9 1.4E-22 3.1E-27 177.1 16.1 230 14-256 132-383 (384)
138 PLN02187 rooty/superroot1 99.9 2.3E-22 5E-27 179.1 17.6 241 13-264 172-442 (462)
139 TIGR00858 bioF 8-amino-7-oxono 99.9 7.4E-22 1.6E-26 171.0 20.0 225 13-255 117-360 (360)
140 PRK08361 aspartate aminotransf 99.9 2.4E-22 5.3E-27 176.1 17.1 238 10-260 131-390 (391)
141 PLN00143 tyrosine/nicotianamin 99.9 6.7E-22 1.5E-26 174.1 19.4 239 13-263 138-407 (409)
142 PRK05664 threonine-phosphate d 99.9 5.2E-22 1.1E-26 170.1 18.2 229 6-260 96-328 (330)
143 PF00155 Aminotran_1_2: Aminot 99.9 7.4E-23 1.6E-27 177.6 12.6 234 6-254 103-363 (363)
144 PLN02656 tyrosine transaminase 99.9 4.6E-22 1E-26 175.2 17.8 238 15-264 139-407 (409)
145 PRK03158 histidinol-phosphate 99.9 2.4E-22 5.2E-27 174.3 15.6 225 11-257 120-358 (359)
146 PLN00145 tyrosine/nicotianamin 99.9 1.2E-21 2.5E-26 173.4 20.0 237 16-265 161-429 (430)
147 PRK07550 hypothetical protein; 99.9 5.5E-22 1.2E-26 173.6 17.7 233 12-257 130-384 (386)
148 TIGR01264 tyr_amTase_E tyrosin 99.9 6.1E-22 1.3E-26 174.2 18.1 238 11-261 134-400 (401)
149 TIGR03538 DapC_gpp succinyldia 99.9 3.3E-22 7.1E-27 175.4 16.2 227 13-257 133-392 (393)
150 COG0079 HisC Histidinol-phosph 99.9 4.4E-22 9.5E-27 170.6 16.4 225 13-260 116-354 (356)
151 PRK07568 aspartate aminotransf 99.9 7.2E-22 1.6E-26 173.5 17.9 235 15-265 131-397 (397)
152 PRK07337 aminotransferase; Val 99.9 1E-21 2.2E-26 172.1 18.5 232 13-258 131-387 (388)
153 TIGR03301 PhnW-AepZ 2-aminoeth 99.9 5E-21 1.1E-25 165.5 22.4 230 16-257 96-354 (355)
154 PRK07865 N-succinyldiaminopime 99.9 3.3E-22 7.1E-27 173.7 15.0 227 7-255 122-363 (364)
155 PLN02450 1-aminocyclopropane-1 99.9 1.6E-21 3.4E-26 174.1 19.2 246 5-262 144-432 (468)
156 KOG0634|consensus 99.9 4.6E-21 1E-25 160.9 20.1 251 6-264 158-470 (472)
157 TIGR01140 L_thr_O3P_dcar L-thr 99.9 9.1E-22 2E-26 168.7 16.3 218 13-254 103-329 (330)
158 PRK06959 putative threonine-ph 99.9 1.9E-21 4.1E-26 167.1 17.9 225 11-263 108-336 (339)
159 PRK09440 avtA valine--pyruvate 99.9 1.3E-21 2.8E-26 172.9 16.8 225 27-263 170-414 (416)
160 PTZ00433 tyrosine aminotransfe 99.9 3.8E-21 8.3E-26 169.6 19.8 244 6-262 138-410 (412)
161 cd00609 AAT_like Aspartate ami 99.9 1.1E-21 2.4E-26 168.9 16.0 233 9-255 96-349 (350)
162 PRK06107 aspartate aminotransf 99.9 1.8E-21 3.9E-26 171.2 17.5 223 27-261 155-401 (402)
163 PRK08056 threonine-phosphate d 99.9 2.4E-21 5.1E-26 167.8 17.7 229 11-259 109-354 (356)
164 TIGR03539 DapC_actino succinyl 99.9 7.8E-22 1.7E-26 170.9 14.3 220 13-254 122-356 (357)
165 PLN02376 1-aminocyclopropane-1 99.9 2.8E-21 6E-26 173.2 18.2 245 5-261 152-439 (496)
166 PRK02731 histidinol-phosphate 99.9 4E-21 8.6E-26 167.1 18.5 225 15-259 127-365 (367)
167 PRK06855 aminotransferase; Val 99.9 3.9E-21 8.4E-26 170.4 18.7 226 27-262 158-431 (433)
168 TIGR02326 transamin_PhnW 2-ami 99.9 2.2E-20 4.7E-25 162.3 22.8 234 14-259 98-361 (363)
169 COG1168 MalY Bifunctional PLP- 99.9 4E-21 8.7E-26 159.6 17.2 245 6-261 117-387 (388)
170 PRK06358 threonine-phosphate d 99.9 4.2E-21 9.1E-26 166.1 18.2 231 7-258 104-353 (354)
171 PTZ00376 aspartate aminotransf 99.9 1.9E-21 4E-26 171.1 15.9 237 5-259 133-402 (404)
172 PLN02607 1-aminocyclopropane-1 99.9 6.6E-21 1.4E-25 169.0 19.3 244 6-261 154-438 (447)
173 PRK00950 histidinol-phosphate 99.9 2.3E-21 5E-26 168.2 16.0 219 14-258 129-360 (361)
174 PRK05839 hypothetical protein; 99.9 1.8E-21 3.9E-26 169.6 15.2 227 9-259 122-373 (374)
175 PRK13355 bifunctional HTH-doma 99.9 3.9E-21 8.5E-26 173.9 17.9 243 6-261 242-515 (517)
176 PLN02721 threonine aldolase 99.9 8E-21 1.7E-25 164.2 19.0 234 16-260 103-352 (353)
177 TIGR01265 tyr_nico_aTase tyros 99.9 6.1E-21 1.3E-25 167.8 18.2 235 14-261 138-402 (403)
178 TIGR03542 DAPAT_plant LL-diami 99.9 3E-21 6.6E-26 169.7 16.0 226 19-257 152-401 (402)
179 PRK07590 L,L-diaminopimelate a 99.9 2.2E-21 4.8E-26 171.0 15.1 224 20-257 157-408 (409)
180 PRK03321 putative aminotransfe 99.9 5.1E-21 1.1E-25 165.5 17.1 223 16-260 118-351 (352)
181 TIGR02539 SepCysS Sep-tRNA:Cys 99.9 1.5E-20 3.1E-25 163.6 19.8 233 14-260 108-368 (370)
182 PRK08363 alanine aminotransfer 99.9 8.9E-21 1.9E-25 166.6 18.6 224 27-262 155-396 (398)
183 PTZ00377 alanine aminotransfer 99.9 7.4E-21 1.6E-25 170.7 18.1 248 5-263 172-478 (481)
184 PRK04781 histidinol-phosphate 99.9 7.5E-21 1.6E-25 165.0 17.5 225 14-258 119-361 (364)
185 cd06451 AGAT_like Alanine-glyo 99.9 3E-20 6.5E-25 160.9 21.0 228 16-258 96-355 (356)
186 PRK05937 8-amino-7-oxononanoat 99.9 5.4E-20 1.2E-24 160.1 22.3 218 19-261 118-351 (370)
187 KOG1360|consensus 99.9 1.7E-20 3.7E-25 155.9 18.0 233 11-261 272-525 (570)
188 TIGR01141 hisC histidinol-phos 99.9 3E-21 6.4E-26 166.6 14.0 220 15-255 114-346 (346)
189 PRK06836 aspartate aminotransf 99.9 1.5E-20 3.3E-25 164.8 17.7 231 13-262 137-393 (394)
190 TIGR03392 FeS_syn_CsdA cystein 99.9 9.9E-20 2.1E-24 160.0 22.7 225 14-261 128-396 (398)
191 PLN02397 aspartate transaminas 99.9 8.1E-21 1.8E-25 167.8 15.8 238 4-259 150-420 (423)
192 PRK09265 aminotransferase AlaT 99.9 1.9E-20 4.2E-25 164.8 17.9 233 16-261 139-402 (404)
193 PRK14807 histidinol-phosphate 99.9 2E-20 4.4E-25 161.7 17.0 220 14-258 118-350 (351)
194 cd06454 KBL_like KBL_like; thi 99.9 3.5E-20 7.6E-25 159.9 18.5 229 13-257 102-348 (349)
195 PRK04870 histidinol-phosphate 99.9 1.2E-20 2.6E-25 163.5 15.5 221 13-257 122-355 (356)
196 PLN03026 histidinol-phosphate 99.9 1.2E-20 2.5E-25 164.7 15.5 221 15-256 146-378 (380)
197 KOG0259|consensus 99.9 6.1E-20 1.3E-24 151.9 18.5 225 27-263 188-436 (447)
198 PRK01688 histidinol-phosphate 99.9 1.2E-20 2.7E-25 163.0 15.0 219 14-254 117-350 (351)
199 PRK13479 2-aminoethylphosphona 99.9 2.7E-19 6E-24 155.6 23.5 236 14-261 100-364 (368)
200 PRK09275 aspartate aminotransf 99.9 1.9E-20 4.1E-25 167.2 16.3 224 27-263 230-520 (527)
201 PLN02231 alanine transaminase 99.9 3.6E-20 7.8E-25 167.1 17.9 248 5-263 225-530 (534)
202 PRK10874 cysteine sulfinate de 99.9 2.4E-19 5.2E-24 157.7 22.8 225 15-261 132-399 (401)
203 PRK05166 histidinol-phosphate 99.8 2.9E-20 6.2E-25 161.9 15.9 224 13-258 129-369 (371)
204 PRK08637 hypothetical protein; 99.8 4.9E-20 1.1E-24 161.4 17.3 243 6-261 103-387 (388)
205 PRK14809 histidinol-phosphate 99.8 4E-20 8.8E-25 160.2 16.3 217 16-259 126-356 (357)
206 TIGR03801 asp_4_decarbox aspar 99.8 6.1E-20 1.3E-24 163.7 17.4 224 27-263 229-519 (521)
207 PRK05387 histidinol-phosphate 99.8 2.6E-20 5.7E-25 161.1 14.7 223 13-259 118-352 (353)
208 KOG0257|consensus 99.8 4E-21 8.7E-26 161.1 8.9 216 27-255 161-414 (420)
209 PRK09105 putative aminotransfe 99.8 3.7E-20 8E-25 161.0 15.3 224 11-258 134-368 (370)
210 TIGR03576 pyridox_MJ0158 pyrid 99.8 1.2E-19 2.6E-24 155.9 18.1 213 23-258 123-345 (346)
211 PRK09295 bifunctional cysteine 99.8 4.2E-19 9E-24 156.4 21.9 224 16-259 137-403 (406)
212 cd00613 GDC-P Glycine cleavage 99.8 1.4E-19 3E-24 159.0 18.1 221 18-254 134-398 (398)
213 COG0520 csdA Selenocysteine ly 99.8 5.1E-19 1.1E-23 154.2 21.2 224 17-259 136-404 (405)
214 PRK14808 histidinol-phosphate 99.8 2.9E-20 6.4E-25 159.5 13.3 224 7-257 107-334 (335)
215 PLN02409 serine--glyoxylate am 99.8 7.7E-19 1.7E-23 154.3 22.1 234 15-262 105-374 (401)
216 TIGR01979 sufS cysteine desulf 99.8 1E-18 2.2E-23 153.8 22.1 228 16-261 132-402 (403)
217 PRK07392 threonine-phosphate d 99.8 1.5E-19 3.2E-24 156.8 15.9 230 8-259 109-358 (360)
218 PRK09257 aromatic amino acid a 99.8 1.5E-19 3.3E-24 158.7 16.1 237 4-257 128-395 (396)
219 TIGR01976 am_tr_V_VC1184 cyste 99.8 8.6E-19 1.9E-23 154.0 20.3 221 16-254 128-397 (397)
220 PRK04635 histidinol-phosphate 99.8 1.5E-19 3.3E-24 156.4 15.2 220 13-257 119-352 (354)
221 cd06453 SufS_like Cysteine des 99.8 1.5E-18 3.3E-23 151.2 21.4 219 15-254 111-373 (373)
222 PLN02855 Bifunctional selenocy 99.8 1.4E-18 3.1E-23 153.8 21.4 229 16-262 146-420 (424)
223 PRK08354 putative aminotransfe 99.8 4.4E-19 9.5E-24 150.8 17.3 215 9-257 90-309 (311)
224 PRK09331 Sep-tRNA:Cys-tRNA syn 99.8 1.3E-18 2.9E-23 152.2 20.5 233 15-261 121-382 (387)
225 PLN02672 methionine S-methyltr 99.8 4.7E-19 1E-23 167.7 17.8 243 6-259 788-1079(1082)
226 PRK13520 L-tyrosine decarboxyl 99.8 1.1E-18 2.4E-23 151.9 18.4 224 15-259 123-370 (371)
227 TIGR01814 kynureninase kynuren 99.8 5.9E-18 1.3E-22 149.1 22.4 216 27-258 157-405 (406)
228 TIGR03402 FeS_nifS cysteine de 99.8 7.2E-18 1.6E-22 147.3 21.4 225 16-261 109-373 (379)
229 PRK02948 cysteine desulfurase; 99.8 3.6E-18 7.9E-23 149.2 19.2 229 16-262 111-376 (381)
230 cd06502 TA_like Low-specificit 99.8 8.9E-19 1.9E-23 150.6 14.8 227 16-256 94-337 (338)
231 COG0075 Serine-pyruvate aminot 99.8 2.8E-17 6.2E-22 139.9 22.6 234 15-262 101-365 (383)
232 TIGR03403 nifS_epsilon cystein 99.8 1.7E-17 3.6E-22 145.1 20.7 224 16-261 113-376 (382)
233 KOG1359|consensus 99.8 1.2E-17 2.6E-22 134.1 17.6 217 25-260 176-412 (417)
234 PRK10534 L-threonine aldolase; 99.8 4.2E-18 9E-23 146.2 14.8 211 27-259 112-332 (333)
235 PRK03967 histidinol-phosphate 99.8 3.7E-18 8E-23 146.8 14.1 213 14-260 112-334 (337)
236 PRK07908 hypothetical protein; 99.8 6.3E-18 1.4E-22 146.0 15.3 218 12-259 112-346 (349)
237 TIGR01977 am_tr_V_EF2568 cyste 99.8 4.2E-17 9.1E-22 142.3 20.5 223 17-256 111-375 (376)
238 TIGR03812 tyr_de_CO2_Arch tyro 99.8 2.5E-17 5.4E-22 143.5 17.1 223 15-256 125-372 (373)
239 PRK13580 serine hydroxymethylt 99.8 1.1E-16 2.4E-21 140.7 20.4 217 27-261 208-446 (493)
240 cd06452 SepCysS Sep-tRNA:Cys-t 99.7 1.7E-16 3.6E-21 137.8 19.1 230 15-258 102-360 (361)
241 COG1104 NifS Cysteine sulfinat 99.7 4.4E-16 9.5E-21 131.9 20.9 226 17-263 115-380 (386)
242 PF00266 Aminotran_5: Aminotra 99.7 1.5E-16 3.2E-21 138.7 16.6 214 17-250 113-371 (371)
243 KOG1357|consensus 99.7 1.2E-16 2.5E-21 135.2 14.2 231 12-259 237-501 (519)
244 KOG0633|consensus 99.7 3.1E-16 6.7E-21 124.1 15.6 225 17-257 132-374 (375)
245 cd00378 SHMT Serine-glycine hy 99.7 3.4E-16 7.4E-21 137.8 17.9 217 27-261 149-386 (402)
246 PRK13034 serine hydroxymethylt 99.7 1.6E-15 3.4E-20 133.8 21.2 216 26-260 155-392 (416)
247 KOG1368|consensus 99.7 1.1E-16 2.4E-21 128.7 12.6 221 27-258 135-366 (384)
248 PRK13238 tnaA tryptophanase/L- 99.7 1.1E-15 2.3E-20 135.9 19.1 226 26-260 161-433 (460)
249 PLN02368 alanine transaminase 99.7 6.8E-17 1.5E-21 141.7 10.8 172 5-179 164-376 (407)
250 COG3977 Alanine-alpha-ketoisov 99.7 2E-15 4.4E-20 121.7 17.9 223 27-262 170-413 (417)
251 PLN02242 methionine gamma-lyas 99.7 2.3E-16 5E-21 138.7 13.7 224 16-261 140-416 (418)
252 TIGR02006 IscS cysteine desulf 99.7 2.9E-15 6.3E-20 131.9 20.6 224 16-261 115-378 (402)
253 cd06450 DOPA_deC_like DOPA dec 99.7 8E-16 1.7E-20 132.6 16.2 210 17-256 116-344 (345)
254 PLN02651 cysteine desulfurase 99.7 1.8E-15 3.8E-20 131.5 16.6 212 16-248 111-364 (364)
255 PRK04366 glycine dehydrogenase 99.7 6.5E-15 1.4E-19 132.1 20.3 238 7-262 172-450 (481)
256 PRK00451 glycine dehydrogenase 99.7 1.1E-14 2.4E-19 130.0 21.4 215 16-258 178-446 (447)
257 cd00614 CGS_like CGS_like: Cys 99.7 6E-16 1.3E-20 134.6 13.0 224 14-258 101-368 (369)
258 KOG0256|consensus 99.7 8.5E-15 1.8E-19 122.7 17.3 221 27-260 209-461 (471)
259 TIGR01437 selA_rel uncharacter 99.7 1.5E-14 3.3E-19 125.4 19.6 225 17-257 124-362 (363)
260 PTZ00094 serine hydroxymethylt 99.7 1.1E-14 2.5E-19 129.7 19.3 215 27-260 170-408 (452)
261 PRK00011 glyA serine hydroxyme 99.7 9.9E-15 2.1E-19 129.1 18.4 217 26-260 152-389 (416)
262 TIGR01325 O_suc_HS_sulf O-succ 99.7 2.5E-15 5.4E-20 131.1 14.2 187 14-220 115-319 (380)
263 PRK06767 methionine gamma-lyas 99.7 3.2E-15 6.8E-20 130.7 14.9 221 17-259 125-384 (386)
264 PRK08247 cystathionine gamma-s 99.7 2.8E-15 6E-20 130.2 14.2 221 14-260 112-364 (366)
265 PRK06460 hypothetical protein; 99.6 5.4E-15 1.2E-19 128.7 15.2 225 14-260 106-374 (376)
266 PRK08249 cystathionine gamma-s 99.6 9.1E-15 2E-19 128.0 15.5 227 15-262 126-395 (398)
267 PRK07504 O-succinylhomoserine 99.6 6.8E-15 1.5E-19 129.0 13.8 224 15-260 127-395 (398)
268 PRK14012 cysteine desulfurase; 99.6 4E-14 8.8E-19 124.7 18.8 225 17-261 118-380 (404)
269 PLN03226 serine hydroxymethylt 99.6 1.2E-13 2.5E-18 123.3 21.7 221 22-260 160-419 (475)
270 PRK07810 O-succinylhomoserine 99.6 1.2E-14 2.5E-19 127.6 15.0 224 14-258 131-402 (403)
271 cd00616 AHBA_syn 3-amino-5-hyd 99.6 2.3E-14 5E-19 123.9 16.3 219 16-255 78-352 (352)
272 cd00617 Tnase_like Tryptophana 99.6 3.5E-14 7.5E-19 124.9 16.2 227 26-261 136-409 (431)
273 PRK06234 methionine gamma-lyas 99.6 3.8E-14 8.2E-19 124.4 16.0 225 14-260 125-397 (400)
274 PF12897 Aminotran_MocR: Alani 99.6 2.5E-14 5.3E-19 119.8 13.3 243 7-258 132-413 (425)
275 TIGR01366 serC_3 phosphoserine 99.6 4.6E-14 1E-18 122.3 15.6 219 19-260 109-360 (361)
276 PRK08133 O-succinylhomoserine 99.6 2.3E-14 5E-19 125.3 13.4 224 14-259 122-389 (390)
277 PRK05968 hypothetical protein; 99.6 4.4E-14 9.6E-19 123.5 14.9 222 15-259 125-385 (389)
278 PLN02414 glycine dehydrogenase 99.6 3.6E-13 7.8E-18 127.8 21.7 239 11-262 631-909 (993)
279 PRK08776 cystathionine gamma-s 99.6 8E-14 1.7E-18 122.3 16.0 187 16-220 123-327 (405)
280 PRK07049 methionine gamma-lyas 99.6 4.1E-14 8.8E-19 125.0 14.0 228 15-259 145-425 (427)
281 TIGR01328 met_gam_lyase methio 99.6 7.7E-14 1.7E-18 122.0 14.8 225 14-260 120-390 (391)
282 TIGR03235 DNA_S_dndA cysteine 99.6 4.9E-14 1.1E-18 122.0 13.2 193 16-229 111-321 (353)
283 KOG2862|consensus 99.6 1.4E-12 3E-17 106.0 19.7 220 27-260 130-382 (385)
284 PRK03080 phosphoserine aminotr 99.6 2.9E-13 6.2E-18 118.2 17.3 204 41-262 137-375 (378)
285 TIGR01324 cysta_beta_ly_B cyst 99.6 1E-13 2.2E-18 120.6 14.3 223 16-259 113-375 (377)
286 PRK07503 methionine gamma-lyas 99.6 3.3E-13 7.1E-18 118.6 17.7 154 14-179 126-282 (403)
287 TIGR02379 ECA_wecE TDP-4-keto- 99.5 5.9E-13 1.3E-17 115.9 18.7 223 14-258 89-375 (376)
288 TIGR01329 cysta_beta_ly_E cyst 99.5 4.2E-14 9.2E-19 123.2 11.5 224 15-260 108-375 (378)
289 COG2008 GLY1 Threonine aldolas 99.5 8.7E-14 1.9E-18 115.7 12.5 218 27-258 113-341 (342)
290 PRK08045 cystathionine gamma-s 99.5 5.2E-13 1.1E-17 116.6 16.8 222 18-261 117-383 (386)
291 TIGR02080 O_succ_thio_ly O-suc 99.5 3.4E-13 7.4E-18 117.6 15.5 220 18-259 116-380 (382)
292 PRK07582 cystathionine gamma-l 99.5 7.5E-13 1.6E-17 114.9 17.0 215 15-254 112-363 (366)
293 PRK07811 cystathionine gamma-s 99.5 3.8E-13 8.3E-18 117.6 15.2 225 14-259 122-387 (388)
294 PRK11706 TDP-4-oxo-6-deoxy-D-g 99.5 8.8E-13 1.9E-17 115.1 17.4 225 14-258 89-374 (375)
295 PRK07050 cystathionine beta-ly 99.5 5.1E-13 1.1E-17 117.0 15.7 228 14-261 126-392 (394)
296 PLN02509 cystathionine beta-ly 99.5 4.7E-13 1E-17 118.7 15.4 223 15-259 194-460 (464)
297 PRK07269 cystathionine gamma-s 99.5 2.7E-13 5.9E-18 117.4 13.4 208 26-259 124-363 (364)
298 PRK05355 3-phosphoserine/phosp 99.5 8.2E-13 1.8E-17 114.4 16.4 208 29-260 131-358 (360)
299 PRK05367 glycine dehydrogenase 99.5 2.2E-12 4.8E-17 122.8 19.9 240 9-262 603-877 (954)
300 COG2873 MET17 O-acetylhomoseri 99.5 1.1E-12 2.4E-17 109.1 15.3 103 11-125 120-224 (426)
301 PRK08064 cystathionine beta-ly 99.5 2.3E-13 5E-18 119.1 11.9 222 15-257 115-383 (390)
302 PRK09028 cystathionine beta-ly 99.5 7.1E-13 1.5E-17 115.5 14.8 190 14-220 122-328 (394)
303 PRK08861 cystathionine gamma-s 99.5 2.7E-13 5.8E-18 118.2 11.8 226 16-261 116-384 (388)
304 PRK12566 glycine dehydrogenase 99.5 6.3E-12 1.4E-16 117.7 20.9 235 13-261 608-877 (954)
305 KOG1358|consensus 99.5 2.3E-12 5.1E-17 107.6 16.1 238 10-261 192-466 (467)
306 PRK07671 cystathionine beta-ly 99.5 7.7E-13 1.7E-17 115.2 13.0 221 16-258 112-376 (377)
307 PRK08574 cystathionine gamma-s 99.5 1.1E-12 2.4E-17 114.5 13.8 225 14-260 113-384 (385)
308 TIGR01364 serC_1 phosphoserine 99.5 4.4E-12 9.5E-17 109.3 17.2 201 38-260 128-348 (349)
309 PRK06084 O-acetylhomoserine am 99.5 8.9E-13 1.9E-17 116.4 13.2 97 16-123 121-218 (425)
310 PRK05967 cystathionine beta-ly 99.5 1.7E-12 3.6E-17 113.1 14.3 227 14-260 125-391 (395)
311 PRK05939 hypothetical protein; 99.5 1.1E-12 2.4E-17 114.8 13.3 99 15-124 108-207 (397)
312 PRK06176 cystathionine gamma-s 99.4 5.6E-13 1.2E-17 116.2 10.8 226 15-260 111-378 (380)
313 COG3844 Kynureninase [Amino ac 99.4 2E-11 4.4E-16 99.9 18.5 220 27-264 155-406 (407)
314 cd00611 PSAT_like Phosphoserin 99.4 6.4E-12 1.4E-16 108.8 16.8 198 38-257 136-353 (355)
315 TIGR01326 OAH_OAS_sulfhy OAH/O 99.4 8.5E-13 1.8E-17 116.6 11.4 100 15-125 119-219 (418)
316 TIGR03588 PseC UDP-4-keto-6-de 99.4 1E-11 2.2E-16 108.7 17.3 226 16-258 89-380 (380)
317 PF01053 Cys_Met_Meta_PP: Cys/ 99.4 3.1E-12 6.7E-17 111.0 13.4 223 13-259 115-386 (386)
318 PLN02724 Molybdenum cofactor s 99.4 6.7E-11 1.5E-15 112.3 22.4 209 39-258 191-486 (805)
319 TIGR00461 gcvP glycine dehydro 99.4 6.6E-11 1.4E-15 111.5 21.9 244 4-261 586-868 (939)
320 PRK06702 O-acetylhomoserine am 99.4 8.7E-12 1.9E-16 109.7 14.9 224 14-260 122-424 (432)
321 PRK11658 UDP-4-amino-4-deoxy-L 99.4 2.8E-11 6.1E-16 105.7 17.7 225 15-258 92-377 (379)
322 PRK08114 cystathionine beta-ly 99.4 5.7E-12 1.2E-16 109.6 13.0 228 14-260 123-393 (395)
323 PRK02769 histidine decarboxyla 99.4 7.9E-11 1.7E-15 102.5 19.8 207 27-260 146-372 (380)
324 PRK04311 selenocysteine syntha 99.4 1.1E-10 2.5E-15 103.6 20.8 234 15-259 190-463 (464)
325 COG0399 WecE Predicted pyridox 99.4 2.3E-11 5.1E-16 104.1 15.0 234 5-260 88-373 (374)
326 PRK08248 O-acetylhomoserine am 99.4 8.5E-12 1.8E-16 110.3 12.8 99 14-123 125-224 (431)
327 TIGR01788 Glu-decarb-GAD gluta 99.4 6.6E-11 1.4E-15 104.4 18.1 221 27-261 175-430 (431)
328 PRK05994 O-acetylhomoserine am 99.4 1.2E-11 2.5E-16 109.5 12.8 97 14-122 124-222 (427)
329 PRK15407 lipopolysaccharide bi 99.3 3.7E-10 8E-15 100.2 20.5 213 27-259 148-435 (438)
330 PRK08134 O-acetylhomoserine am 99.3 7.5E-11 1.6E-15 104.3 14.9 88 15-113 126-214 (433)
331 cd00615 Orn_deC_like Ornithine 99.3 1.5E-11 3.2E-16 103.9 9.9 146 26-178 140-293 (294)
332 TIGR00474 selA seryl-tRNA(sec) 99.3 4.9E-10 1.1E-14 99.3 19.6 230 14-254 184-453 (454)
333 PLN02880 tyrosine decarboxylas 99.3 2.1E-10 4.6E-15 102.9 17.5 225 27-263 222-487 (490)
334 TIGR03531 selenium_SpcS O-phos 99.3 1.7E-10 3.7E-15 101.6 16.5 219 27-257 190-443 (444)
335 PRK07812 O-acetylhomoserine am 99.3 4.4E-11 9.5E-16 105.7 12.4 87 16-112 132-219 (436)
336 PF01041 DegT_DnrJ_EryC1: DegT 99.3 9.4E-10 2E-14 95.6 19.9 208 27-255 102-363 (363)
337 COG0626 MetC Cystathionine bet 99.3 7.1E-11 1.5E-15 101.7 12.2 224 13-260 123-394 (396)
338 PRK15029 arginine decarboxylas 99.3 8.3E-10 1.8E-14 102.6 19.9 224 27-259 291-603 (755)
339 COG1448 TyrB Aspartate/tyrosin 99.2 1.1E-10 2.5E-15 97.8 12.1 237 1-257 125-395 (396)
340 PLN02452 phosphoserine transam 99.2 5.5E-10 1.2E-14 96.6 16.8 203 36-260 141-363 (365)
341 KOG0053|consensus 99.2 2.1E-10 4.5E-15 98.0 12.7 127 16-154 140-270 (409)
342 PLN02271 serine hydroxymethylt 99.2 2.4E-09 5.2E-14 95.5 19.3 213 27-259 286-539 (586)
343 PRK05613 O-acetylhomoserine am 99.2 2.5E-10 5.5E-15 101.0 12.8 90 14-113 130-220 (437)
344 PLN03032 serine decarboxylase; 99.2 1.4E-09 3E-14 94.2 16.9 204 27-256 147-372 (374)
345 COG0112 GlyA Glycine/serine hy 99.2 8E-09 1.7E-13 87.2 19.8 215 27-260 154-390 (413)
346 PLN02590 probable tyrosine dec 99.2 5E-09 1.1E-13 94.6 19.6 225 27-263 270-535 (539)
347 PF01276 OKR_DC_1: Orn/Lys/Arg 99.1 5.4E-10 1.2E-14 97.1 11.7 211 27-245 152-416 (417)
348 COG1003 GcvP Glycine cleavage 99.1 1.6E-08 3.4E-13 86.3 19.7 239 7-262 168-449 (496)
349 KOG1549|consensus 99.1 2.9E-09 6.3E-14 91.3 15.6 224 18-261 156-419 (428)
350 PF00464 SHMT: Serine hydroxym 99.1 2.1E-09 4.4E-14 93.1 14.8 208 27-253 157-398 (399)
351 TIGR01365 serC_2 phosphoserine 99.1 4.1E-09 9E-14 91.3 15.2 199 44-259 131-372 (374)
352 TIGR03799 NOD_PanD_pyr putativ 99.1 2.4E-08 5.1E-13 90.2 19.9 223 19-253 235-518 (522)
353 PRK06434 cystathionine gamma-l 99.1 1.5E-09 3.3E-14 94.5 11.8 220 13-259 124-383 (384)
354 COG1103 Archaea-specific pyrid 99.0 2.8E-08 6E-13 79.9 16.1 226 17-260 121-380 (382)
355 PRK05367 glycine dehydrogenase 99.0 3.5E-08 7.6E-13 94.6 19.6 213 14-255 187-437 (954)
356 PLN02263 serine decarboxylase 99.0 4E-08 8.8E-13 86.8 18.3 219 16-260 198-443 (470)
357 PLN02414 glycine dehydrogenase 99.0 3.2E-08 7E-13 94.6 18.7 213 15-256 215-465 (993)
358 PRK13578 ornithine decarboxyla 99.0 6.6E-08 1.4E-12 89.4 19.3 224 27-259 261-564 (720)
359 PRK15400 lysine decarboxylase 99.0 7E-08 1.5E-12 89.1 18.6 223 27-259 281-558 (714)
360 PRK15399 lysine decarboxylase 98.9 1.6E-07 3.4E-12 86.8 20.0 222 27-259 281-558 (713)
361 PRK13237 tyrosine phenol-lyase 98.9 1.5E-07 3.3E-12 82.6 17.8 226 27-261 162-434 (460)
362 TIGR02618 tyr_phenol_ly tyrosi 98.9 2.6E-07 5.6E-12 81.0 18.5 225 27-261 155-427 (450)
363 PRK12462 phosphoserine aminotr 98.9 1.9E-07 4.2E-12 80.3 17.3 199 38-260 141-362 (364)
364 KOG3846|consensus 98.8 4E-07 8.6E-12 74.6 16.7 221 28-262 201-463 (465)
365 cd01494 AAT_I Aspartate aminot 98.8 2E-08 4.4E-13 77.0 7.1 103 12-123 58-169 (170)
366 PF02347 GDC-P: Glycine cleava 98.8 2.6E-07 5.6E-12 80.6 14.1 217 12-254 174-429 (429)
367 TIGR00461 gcvP glycine dehydro 98.8 1E-06 2.2E-11 83.8 19.0 214 14-255 175-426 (939)
368 TIGR02617 tnaA_trp_ase tryptop 98.8 1.6E-06 3.5E-11 75.6 18.6 224 27-260 168-441 (467)
369 COG0403 GcvP Glycine cleavage 98.7 2.7E-06 5.9E-11 72.8 19.0 223 13-257 185-447 (450)
370 COG0076 GadB Glutamate decarbo 98.7 2E-07 4.3E-12 82.9 12.0 185 27-227 194-401 (460)
371 PF05889 SLA_LP_auto_ag: Solub 98.6 5.9E-07 1.3E-11 76.8 12.0 220 27-259 140-389 (389)
372 COG1921 SelA Selenocysteine sy 98.6 3.3E-07 7.1E-12 78.3 9.6 137 14-160 129-272 (395)
373 KOG0258|consensus 98.6 6.8E-07 1.5E-11 75.4 11.0 217 27-261 199-470 (475)
374 KOG1383|consensus 98.5 1.9E-05 4.2E-10 68.3 17.9 228 17-263 191-449 (491)
375 PF04864 Alliinase_C: Allinase 98.5 2E-07 4.3E-12 77.8 5.4 193 42-256 139-361 (363)
376 KOG2040|consensus 98.4 2.2E-05 4.7E-10 70.6 16.3 236 11-261 645-919 (1001)
377 KOG0628|consensus 98.4 1.8E-05 4E-10 68.3 14.7 225 27-261 218-472 (511)
378 PF03841 SelA: L-seryl-tRNA se 98.3 6.4E-07 1.4E-11 76.0 4.2 137 17-159 112-261 (367)
379 COG1982 LdcC Arginine/lysine/o 98.2 0.00037 7.9E-09 62.7 19.1 216 27-255 152-403 (557)
380 PF01212 Beta_elim_lyase: Beta 98.1 3.2E-06 6.8E-11 71.0 4.4 110 16-130 91-214 (290)
381 PRK12566 glycine dehydrogenase 98.1 0.00033 7.2E-09 66.9 17.4 202 29-255 199-439 (954)
382 PF00282 Pyridoxal_deC: Pyrido 98.1 0.00012 2.6E-09 63.9 13.6 158 17-179 162-353 (373)
383 KOG2467|consensus 98.0 0.00016 3.6E-09 60.9 12.8 209 27-258 177-424 (477)
384 KOG1412|consensus 98.0 0.00036 7.7E-09 57.7 13.3 214 27-261 164-406 (410)
385 COG1932 SerC Phosphoserine ami 97.9 0.00078 1.7E-08 57.0 15.4 149 103-260 192-363 (365)
386 COG3033 TnaA Tryptophanase [Am 97.9 0.0014 3E-08 55.4 16.0 222 27-260 170-444 (471)
387 TIGR03811 tyr_de_CO2_Ent tyros 97.8 0.0053 1.1E-07 56.7 19.6 156 19-179 248-474 (608)
388 KOG0629|consensus 97.5 0.0051 1.1E-07 53.2 14.0 230 18-257 222-506 (510)
389 PF06838 Met_gamma_lyase: Meth 97.1 0.0037 8.1E-08 53.2 9.0 188 16-222 127-333 (403)
390 KOG1411|consensus 96.7 0.011 2.4E-07 49.9 8.6 229 11-258 161-423 (427)
391 KOG2040|consensus 96.6 0.15 3.2E-06 46.9 14.9 195 39-255 246-478 (1001)
392 KOG3843|consensus 96.1 0.0093 2E-07 48.5 4.7 54 27-83 142-196 (432)
393 COG4100 Cystathionine beta-lya 94.5 0.8 1.7E-05 38.4 10.8 112 14-132 136-257 (416)
394 KOG2790|consensus 93.1 1.3 2.8E-05 36.9 9.6 109 147-261 253-369 (370)
395 PF06153 DUF970: Protein of un 83.3 1.6 3.4E-05 30.9 3.2 48 210-261 11-67 (109)
396 smart00642 Aamy Alpha-amylase 81.3 7.7 0.00017 29.7 6.7 60 27-86 17-95 (166)
397 COG3870 Uncharacterized protei 79.5 14 0.0003 25.5 6.5 49 210-262 11-68 (109)
398 PF03652 UPF0081: Uncharacteri 77.9 14 0.0003 27.2 6.9 58 26-84 38-98 (135)
399 COG0296 GlgB 1,4-alpha-glucan 73.5 4.7 0.0001 37.7 4.1 33 58-90 211-243 (628)
400 PRK11633 cell division protein 68.2 34 0.00074 27.7 7.4 59 199-257 149-213 (226)
401 COG1105 FruK Fructose-1-phosph 67.7 17 0.00036 30.9 5.8 26 58-83 143-168 (310)
402 KOG3974|consensus 66.1 15 0.00032 30.4 4.9 61 14-80 74-138 (306)
403 COG0616 SppA Periplasmic serin 65.8 8.1 0.00018 33.1 3.7 55 28-83 82-139 (317)
404 PF07085 DRTGG: DRTGG domain; 60.2 32 0.00068 23.8 5.3 51 18-80 41-91 (105)
405 COG0352 ThiE Thiamine monophos 60.1 22 0.00047 28.5 4.9 51 28-83 24-74 (211)
406 PRK10785 maltodextrin glucosid 59.5 30 0.00065 32.5 6.5 61 27-87 177-252 (598)
407 TIGR00789 flhB_rel flhB C-term 59.0 9.1 0.0002 25.6 2.2 24 61-84 27-50 (82)
408 PRK00109 Holliday junction res 58.7 39 0.00084 25.0 5.8 57 27-84 42-100 (138)
409 PF13481 AAA_25: AAA domain; P 58.5 24 0.00052 27.2 5.0 52 28-79 129-184 (193)
410 PF02677 DUF208: Uncharacteriz 57.9 22 0.00048 27.5 4.4 52 28-83 12-63 (176)
411 COG0108 RibB 3,4-dihydroxy-2-b 56.4 22 0.00047 28.1 4.2 34 40-78 156-189 (203)
412 PRK04452 acetyl-CoA decarbonyl 54.5 33 0.00071 29.4 5.4 43 27-79 138-180 (319)
413 PF07894 DUF1669: Protein of u 53.4 41 0.00088 28.2 5.6 48 29-84 137-186 (284)
414 TIGR00250 RNAse_H_YqgF RNAse H 53.1 40 0.00088 24.6 5.0 54 27-84 36-94 (130)
415 cd04915 ACT_AK-Ectoine_2 ACT d 52.9 44 0.00094 20.9 4.6 46 211-258 17-64 (66)
416 PRK10927 essential cell divisi 52.8 86 0.0019 26.7 7.4 58 200-257 248-307 (319)
417 PLN03244 alpha-amylase; Provis 52.7 26 0.00057 33.9 4.8 31 58-88 438-468 (872)
418 PF05368 NmrA: NmrA-like famil 51.9 51 0.0011 26.3 6.0 60 13-79 40-99 (233)
419 TIGR02403 trehalose_treC alpha 51.7 47 0.001 30.8 6.4 60 27-86 25-100 (543)
420 COG1377 FlhB Flagellar biosynt 51.5 20 0.00043 31.2 3.6 45 38-83 260-318 (363)
421 cd01123 Rad51_DMC1_radA Rad51_ 51.1 28 0.0006 27.9 4.4 63 18-80 86-166 (235)
422 PF12138 Spherulin4: Spherulat 51.0 58 0.0013 26.9 6.2 51 28-78 18-71 (253)
423 cd01393 recA_like RecA is a b 50.9 67 0.0015 25.5 6.6 63 17-79 85-164 (226)
424 TIGR00097 HMP-P_kinase phospho 50.6 56 0.0012 26.7 6.1 56 20-83 44-103 (254)
425 cd01121 Sms Sms (bacterial rad 50.2 36 0.00078 29.9 5.1 61 18-79 137-205 (372)
426 TIGR03581 EF_0839 conserved hy 50.2 14 0.0003 29.6 2.2 29 58-86 186-214 (236)
427 COG0529 CysC Adenylylsulfate k 50.2 65 0.0014 25.2 5.8 64 199-262 25-92 (197)
428 TIGR00160 MGSA methylglyoxal s 49.2 33 0.00072 25.5 4.0 53 28-85 62-115 (143)
429 PRK10949 protease 4; Provision 49.2 27 0.00059 32.9 4.4 48 29-79 354-401 (618)
430 KOG0352|consensus 48.2 27 0.00059 31.2 3.9 43 192-237 316-358 (641)
431 cd04920 ACT_AKiii-DAPDC_2 ACT 48.1 39 0.00085 20.9 3.8 45 212-258 17-61 (63)
432 TIGR03849 arch_ComA phosphosul 47.6 25 0.00053 28.7 3.4 51 27-81 10-61 (237)
433 COG2870 RfaE ADP-heptose synth 47.4 38 0.00083 30.0 4.7 35 40-80 143-177 (467)
434 cd00984 DnaB_C DnaB helicase C 46.9 75 0.0016 25.5 6.3 54 26-79 106-168 (242)
435 PRK09461 ansA cytoplasmic aspa 46.7 84 0.0018 27.2 6.8 49 26-79 221-269 (335)
436 COG2257 Uncharacterized homolo 46.5 13 0.00028 25.1 1.4 24 61-84 32-55 (92)
437 PRK13109 flhB flagellar biosyn 46.3 23 0.00051 30.8 3.3 44 39-83 263-320 (358)
438 TIGR02402 trehalose_TreZ malto 46.3 28 0.00062 32.2 4.1 63 27-89 109-188 (542)
439 PRK12757 cell division protein 46.1 1.3E+02 0.0028 24.9 7.4 58 199-256 184-243 (256)
440 PF10237 N6-adenineMlase: Prob 46.0 70 0.0015 24.4 5.5 53 11-72 58-115 (162)
441 PF00128 Alpha-amylase: Alpha 45.6 18 0.0004 30.0 2.6 28 59-86 50-77 (316)
442 PRK10933 trehalose-6-phosphate 45.3 80 0.0017 29.4 6.8 60 27-86 31-106 (551)
443 PF13872 AAA_34: P-loop contai 45.0 17 0.00038 30.7 2.2 25 60-84 158-183 (303)
444 PF07071 DUF1341: Protein of u 44.6 12 0.00025 29.6 1.1 60 19-85 151-213 (218)
445 COG3964 Predicted amidohydrola 43.5 49 0.0011 28.1 4.6 68 28-106 199-272 (386)
446 PF05036 SPOR: Sporulation rel 43.0 55 0.0012 20.6 4.1 56 200-255 5-65 (76)
447 cd01840 SGNH_hydrolase_yrhL_li 42.8 74 0.0016 23.5 5.3 49 28-80 66-115 (150)
448 KOG0237|consensus 41.9 77 0.0017 29.6 5.9 53 28-80 14-74 (788)
449 PF03796 DnaB_C: DnaB-like hel 41.9 1E+02 0.0022 25.2 6.4 54 27-80 113-176 (259)
450 PF07905 PucR: Purine cataboli 41.8 56 0.0012 23.5 4.3 46 27-79 57-104 (123)
451 PRK12468 flhB flagellar biosyn 41.6 30 0.00065 30.5 3.3 44 39-83 261-318 (386)
452 TIGR00328 flhB flagellar biosy 41.5 29 0.00062 30.2 3.1 44 39-83 254-311 (347)
453 PF02844 GARS_N: Phosphoribosy 41.4 1E+02 0.0022 21.5 5.2 51 28-78 12-66 (100)
454 cd04937 ACT_AKi-DapG-BS_2 ACT 41.0 67 0.0015 19.8 4.1 45 212-258 18-62 (64)
455 cd01169 HMPP_kinase 4-amino-5- 40.9 97 0.0021 24.9 6.1 49 27-83 52-104 (242)
456 PRK09441 cytoplasmic alpha-amy 40.5 36 0.00078 31.0 3.8 29 59-87 79-107 (479)
457 PF13167 GTP-bdg_N: GTP-bindin 40.0 1.2E+02 0.0027 20.8 5.5 57 27-83 9-67 (95)
458 cd01171 YXKO-related B.subtili 39.8 71 0.0015 26.0 5.2 60 12-81 50-111 (254)
459 COG0816 Predicted endonuclease 39.7 1E+02 0.0022 23.0 5.3 57 27-84 41-99 (141)
460 PRK12313 glycogen branching en 39.7 41 0.00088 31.9 4.1 48 40-87 184-246 (633)
461 TIGR00381 cdhD CO dehydrogenas 39.0 74 0.0016 28.0 5.2 18 62-79 228-245 (389)
462 PRK12595 bifunctional 3-deoxy- 38.9 98 0.0021 27.1 6.0 58 27-84 237-297 (360)
463 PRK12772 bifunctional flagella 38.7 34 0.00074 32.2 3.4 44 39-83 517-574 (609)
464 PF14258 DUF4350: Domain of un 38.7 1E+02 0.0022 19.4 5.2 52 17-80 18-70 (70)
465 cd01822 Lysophospholipase_L1_l 38.2 67 0.0015 24.1 4.6 19 60-78 121-139 (177)
466 TIGR01515 branching_enzym alph 37.8 45 0.00097 31.5 4.1 48 40-87 170-232 (613)
467 PF02142 MGS: MGS-like domain 37.1 28 0.00061 23.6 2.0 43 31-78 52-94 (95)
468 PRK13397 3-deoxy-7-phosphohept 36.8 1.3E+02 0.0028 24.8 6.1 57 27-84 134-194 (250)
469 PRK05601 DNA polymerase III su 36.8 80 0.0017 27.7 5.0 69 5-84 283-364 (377)
470 PF13378 MR_MLE_C: Enolase C-t 36.8 59 0.0013 22.6 3.7 48 27-81 6-53 (111)
471 TIGR00196 yjeF_cterm yjeF C-te 36.7 92 0.002 25.8 5.4 60 12-81 66-126 (272)
472 TIGR00530 AGP_acyltrn 1-acyl-s 36.6 1.5E+02 0.0032 20.8 6.0 47 28-78 79-125 (130)
473 TIGR03156 GTP_HflX GTP-binding 36.4 1.1E+02 0.0023 26.6 5.9 58 27-84 18-77 (351)
474 PRK08883 ribulose-phosphate 3- 36.3 1.6E+02 0.0035 23.7 6.5 14 13-26 77-90 (220)
475 PF00926 DHBP_synthase: 3,4-di 36.1 62 0.0013 25.6 4.0 34 40-78 152-185 (194)
476 cd04918 ACT_AK1-AT_2 ACT domai 36.1 97 0.0021 19.1 4.3 45 212-258 17-63 (65)
477 COG2159 Predicted metal-depend 36.1 1.4E+02 0.003 25.3 6.4 52 28-86 115-166 (293)
478 TIGR00506 ribB 3,4-dihydroxy-2 36.0 80 0.0017 25.0 4.6 34 40-78 157-190 (199)
479 cd04923 ACT_AK-LysC-DapG-like_ 36.0 72 0.0016 19.0 3.7 45 212-258 17-61 (63)
480 PRK05402 glycogen branching en 35.7 51 0.0011 31.8 4.1 48 40-87 279-341 (726)
481 PRK05234 mgsA methylglyoxal sy 35.3 1.3E+02 0.0027 22.4 5.4 47 29-80 65-112 (142)
482 PRK05702 flhB flagellar biosyn 35.2 42 0.0009 29.3 3.2 44 39-83 261-318 (359)
483 COG1066 Sms Predicted ATP-depe 35.1 97 0.0021 27.7 5.3 61 18-79 147-215 (456)
484 KOG0635|consensus 34.8 1.9E+02 0.0042 22.0 6.1 65 193-260 30-98 (207)
485 PF02603 Hpr_kinase_N: HPr Ser 34.7 47 0.001 24.1 2.9 39 30-80 73-111 (127)
486 KOG3350|consensus 34.6 20 0.00044 27.8 1.0 40 9-50 106-145 (217)
487 cd00411 Asparaginase Asparagin 34.5 1.5E+02 0.0032 25.5 6.4 55 18-79 210-267 (323)
488 cd01827 sialate_O-acetylestera 34.4 87 0.0019 23.8 4.7 49 30-78 94-152 (188)
489 cd07018 S49_SppA_67K_type Sign 34.3 1.3E+02 0.0028 24.1 5.8 47 27-78 30-82 (222)
490 cd01422 MGS Methylglyoxal synt 33.4 1.7E+02 0.0037 20.7 5.7 46 29-79 60-106 (115)
491 PRK14706 glycogen branching en 33.2 56 0.0012 31.0 3.9 30 59-88 215-244 (639)
492 KOG2741|consensus 33.0 1.1E+02 0.0024 26.5 5.2 61 17-84 72-132 (351)
493 PRK01792 ribB 3,4-dihydroxy-2- 32.9 95 0.0021 24.9 4.6 34 40-78 167-200 (214)
494 cd01821 Rhamnogalacturan_acety 32.9 1.2E+02 0.0027 23.3 5.4 39 40-78 107-150 (198)
495 PRK00910 ribB 3,4-dihydroxy-2- 32.9 97 0.0021 25.0 4.6 34 40-78 168-201 (218)
496 cd00394 Clp_protease_like Case 32.8 1.2E+02 0.0027 22.5 5.2 48 26-78 11-61 (161)
497 PF01301 Glyco_hydro_35: Glyco 32.7 30 0.00066 29.6 1.9 69 11-80 7-82 (319)
498 PF13401 AAA_22: AAA domain; P 32.7 54 0.0012 23.2 3.1 25 60-84 73-98 (131)
499 TIGR02100 glgX_debranch glycog 32.6 50 0.0011 31.7 3.5 27 60-86 244-270 (688)
500 PF01248 Ribosomal_L7Ae: Ribos 32.3 1.6E+02 0.0034 19.8 5.4 47 28-83 20-67 (95)
No 1
>COG4992 ArgD Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism]
Probab=100.00 E-value=4.7e-49 Score=330.11 Aligned_cols=254 Identities=41% Similarity=0.731 Sum_probs=239.4
Q ss_pred CCccCCcCcccccCCCCCCceeecCCCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEe
Q psy6547 1 MLITTDPTSYNEFGPHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIAD 80 (266)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~v~~~~~~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~D 80 (266)
+|++++|..++.|.|+-++++++||||++++++++ ++++++|++||+++.+|.++++++++++++++|++||+++|+|
T Consensus 147 lS~t~~~ky~~~F~Pl~~g~~~vpfnDi~al~~ai--~~~taAvivEPIQGEgGV~~~~~~fl~~lr~lCd~~g~LLI~D 224 (404)
T COG4992 147 LSATGQPKYRKGFGPLLPGFRHVPFNDIEALEAAI--DEDTAAVIVEPIQGEGGVIPAPPEFLKALRELCDEHGALLILD 224 (404)
T ss_pred eeccCChhhccCCCCCCCCceecCCCCHHHHHHHh--ccCeEEEEEecccCCCCCCCCCHHHHHHHHHHHHHhCeEEEEe
Confidence 58999999999999999999999999999999999 4589999999999999999999999999999999999999999
Q ss_pred ccccCcCCcCcccccccCCCCcCeeeecccccCCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHhhc
Q psy6547 81 EVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEE 160 (266)
Q Consensus 81 e~~~~~~~~g~~~~~~~~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~ 160 (266)
|+|+|+||+|..|+++++++.||+++++|++||| +|+|++++++...+.+.+..|++||++||++++++.++|+.+.++
T Consensus 225 EVQtG~GRTGk~fA~e~~gV~PDI~tlaK~LgGG-~PigA~la~~~~~~~~~~G~HgSTfGGNpLacAv~~a~l~~l~~e 303 (404)
T COG4992 225 EVQTGLGRTGKLFAYEHYGVEPDILTLAKALGGG-FPIGAMLATEEIASAFTPGDHGSTFGGNPLACAVALAVLEVLLEE 303 (404)
T ss_pred ccccCCCccchHHHHHHhCCCCCEEEeeccccCC-ccceeeEEchhhhhcCCCCcccCCCCcCHHHHHHHHHHHHHHcch
Confidence 9999999999999999999999999999999999 999999999777888999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHHHhhccccc--CCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccCCCCEEEEec
Q psy6547 161 NMIENAYKMGEIFRSELSSPANK--SKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPISNNIIRLSP 238 (266)
Q Consensus 161 ~~~~~~~~~~~~l~~~l~~~~~~--~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~iR~~~ 238 (266)
++.++.++.+++++++|++ +.. +.+.. ++|.|+ |+.+++.. ...+.++++.|.++|+++.+.+++.+||.|
T Consensus 304 ~ll~~v~~~g~~~~~~L~~-l~~~~~~v~~-vRG~GL---miGiel~~--~~~a~~~~~~~~~~gvL~~~a~~~ViR~~P 376 (404)
T COG4992 304 GLLENVREKGEYLLQRLRE-LKRRYPLVKE-VRGRGL---MIGIELKE--PYRARDIVRALREEGVLVLPAGPNVIRFLP 376 (404)
T ss_pred hHHHHHHHHHHHHHHHHHH-HhhcCCceee-eeccee---EEEEEecC--cccHHHHHHHHHHCCeEEecCCCCeEEecC
Confidence 9999999999999999999 654 34555 999999 99999988 335889999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHHhhc
Q psy6547 239 ALNITEQELREGLDIIINTINTMAAK 264 (266)
Q Consensus 239 ~~~~t~~~i~~~~~~l~~~~~~~~~~ 264 (266)
++.++++++++++++|+++++.....
T Consensus 377 pL~i~~eei~~~~~~l~~~l~~~~~~ 402 (404)
T COG4992 377 PLVITEEEIDEALDALERALAAASAR 402 (404)
T ss_pred CccCCHHHHHHHHHHHHHHHHHhhhc
Confidence 99999999999999999999876543
No 2
>KOG1402|consensus
Probab=100.00 E-value=1.6e-43 Score=285.30 Aligned_cols=253 Identities=57% Similarity=1.015 Sum_probs=236.5
Q ss_pred CCccCCcCcccccCCCCCC-ceeecCCCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEE
Q psy6547 1 MLITTDPTSYNEFGPHMPG-YNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIA 79 (266)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~-v~~~~~~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~ 79 (266)
+|++++|..++.|+|+.|+ +..+||+|.++|+.+++ +++++++++||+++..|.+++++.++++.+++|.+|++++|.
T Consensus 168 is~s~d~ds~~~fgp~~P~~~~~v~Y~d~eale~~l~-~~~vaaFivEPIQGEaGVvvP~~GYL~~vreLCtkynvl~I~ 246 (427)
T KOG1402|consen 168 ISLSTDPDSWDGFGPFLPGVVDKVPYGDAEALEVALK-SPNVAAFIVEPIQGEAGVVVPPPGYLKKVRELCTKYNVLLIA 246 (427)
T ss_pred EEecCCcchhhccCCCCCCcceeeccCCHHHHHHHhc-CCCeeEEEeeccccccceEeCCchhHHHHHHHHHhhcEEEEe
Confidence 5789999999999999999 88999999999999995 469999999999999999999999999999999999999999
Q ss_pred eccccCcCCcCcccccccCCCCcCeeeecccccCCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHhh
Q psy6547 80 DEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILE 159 (266)
Q Consensus 80 De~~~~~~~~g~~~~~~~~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~ 159 (266)
||+|+|++|+|..++.+...+.||++.++|+++||++|++.++++++++-.+++..|++||.+||++++++.++|+.+.+
T Consensus 247 DEvQTGl~RTGk~la~d~env~PDivilgKalSGG~~Pvsavl~~~~im~~~~pgeHgsTyggNpLg~~vaiAalevi~e 326 (427)
T KOG1402|consen 247 DEVQTGLARTGKLLACDYENVRPDIVILGKALSGGVYPVSAVLADDDIMLNIKPGEHGSTYGGNPLGCAVAIAALEVIVE 326 (427)
T ss_pred hhhhhcccccCcEEEeehhhcCCCeEEEeccccCCeeeeEEEEecHHHHhccCCCccccccCCChHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHHHHHhhcccccC--C-CcccEEecCccceeeEEEEeeC--ccchHHHHHHHHHHCCceeccCCCCEE
Q psy6547 160 ENMIENAYKMGEIFRSELSSPANKS--K-ASFKLSSGGLKKSINTLILSVS--AILEVYDVCIKMKDAGLVTKPISNNII 234 (266)
Q Consensus 160 ~~~~~~~~~~~~~l~~~l~~~~~~~--~-~~~~~~~~g~~~~~~~~~~~~~--~~~~~~~~~~~l~~~gi~~~~~~~~~i 234 (266)
+++.++...++..++.+|.+ +... . +.. +++.|+ +..+++... ++.++.++|-.|.++|++.-|.+++.|
T Consensus 327 ekL~era~~lG~~l~~~L~~-l~~~~p~~v~~-VRGrGl---~~ai~i~~~~~~~~~aw~~cl~lk~~g~LAkptH~~Ii 401 (427)
T KOG1402|consen 327 EKLVERAAKLGEILRDQLNK-LQKKFPHVVKE-VRGRGL---LNAIVINPSKTSGQDAWDVCLALKENGLLAKPTHGNII 401 (427)
T ss_pred HHHHHHHHHHHHHHHHHHHh-ccccccchhhe-eeccce---EEEEEeccccccchhHHHHHHcccccccccCCCCCCeE
Confidence 99999999999999999999 6642 3 444 899999 988887632 256788999999999999999999999
Q ss_pred EEeccCCCCHHHHHHHHHHHHHHHH
Q psy6547 235 RLSPALNITEQELREGLDIIINTIN 259 (266)
Q Consensus 235 R~~~~~~~t~~~i~~~~~~l~~~~~ 259 (266)
||+|++.++++|+++.++.|.+++.
T Consensus 402 RfaPPL~I~e~dl~eg~e~i~k~i~ 426 (427)
T KOG1402|consen 402 RFAPPLVISEEDLREGIEAIEKTIA 426 (427)
T ss_pred EecCCcccCHHHHHHHHHHHHHHhc
Confidence 9999999999999999999998764
No 3
>COG0160 GabT 4-aminobutyrate aminotransferase and related aminotransferases [Amino acid transport and metabolism]
Probab=100.00 E-value=4.7e-42 Score=295.83 Aligned_cols=254 Identities=39% Similarity=0.694 Sum_probs=225.9
Q ss_pred CCccCCcCcc-cccCCCCCCceeecCCC-----------------HHHHHHHHhc---C-CCEEEEEEccccCCCCcccC
Q psy6547 1 MLITTDPTSY-NEFGPHMPGYNIIPYND-----------------VDALEAKLKS---N-PNICAFMVEPIQGEAGAVVP 58 (266)
Q Consensus 1 ~~~~~~~~~~-~~~~~~~~~v~~~~~~d-----------------~~~l~~~l~~---~-~~~~~i~~~~~~~~~g~~~~ 58 (266)
||+|+..... ..|.|+.++|+++||++ .+.+++.+.. . .+++++++||+++.+|.+++
T Consensus 161 lslT~~~~~~~~~~~~~~~~v~~~Pyp~~yr~p~~~~~~~~~~~~~~~~e~~i~~~~~~~~~vAaiI~EpIQgegG~~v~ 240 (447)
T COG0160 161 LSLTGSKPPYKAGFGPLPPGVYHVPYPNPYRCPFGIGGEECGDDALEYIERALFDLEVGPEEVAAIIIEPIQGEGGIIVP 240 (447)
T ss_pred HHhccCccccccCCCCCCCCeEEecCCccccCcccCchhhhhHHHHHHHHHHHHhhcCCCCceeEEEEecccCCCCCcCC
Confidence 3555555555 56899999999999884 2445664433 1 27999999999999999999
Q ss_pred ChHHHHHHHHHHHhcCCEEEEeccccCcCCcCcccccccCCCCcCeeeecccccCCchhhhhheecHHhhhccCCCCCCC
Q psy6547 59 DDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGS 138 (266)
Q Consensus 59 ~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~~~~~~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~~~~~~ 138 (266)
|++|+++++++|++||+++|+||+|+||||+|..|+++++|+.||++++||++++| +|+|.+++++++++ ..+..+..
T Consensus 241 p~~fl~~l~~~~~~~gillI~DEVQtG~GRTG~~fa~E~~gv~PDivt~aK~ig~G-~Pl~avv~r~ei~~-~~~g~~~~ 318 (447)
T COG0160 241 PKGFLKALRKLCREHGILLIADEVQTGFGRTGKMFAFEHFGVEPDIVTLAKSLGGG-LPLSAVVGRAEIMD-WPPGGHGG 318 (447)
T ss_pred CHHHHHHHHHHHHHcCCEEEEeccccCCCccccchhhhhcCCCCCEEEecccccCC-CceeEEeccHHhcc-cCCcccCC
Confidence 99999999999999999999999999999999999999999999999999999999 99999999999998 77778999
Q ss_pred CCCCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccc--CCCcccEEecCccceeeEEEEeeCc------cc
Q psy6547 139 TYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSSPANK--SKASFKLSSGGLKKSINTLILSVSA------IL 210 (266)
Q Consensus 139 ~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~--~~~~~~~~~~g~~~~~~~~~~~~~~------~~ 210 (266)
||.+||++++++.++|+.++++++.++..+++++++++|++ +.. +.+.+ ++|.|+ |+.+++..+. ..
T Consensus 319 Tf~GNpva~Aaa~AvL~vie~e~L~~~a~~~G~~l~~~L~~-l~~~~~~Igd-VRG~Gl---m~giE~v~d~~t~~p~~~ 393 (447)
T COG0160 319 TFGGNPVACAAALAVLDVIEEENLLERAAELGEYLRDRLEE-LQEKHPLIGD-VRGLGL---MIGVELVKDRDTKEPDAE 393 (447)
T ss_pred CCCcCHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHH-HHhhcCceec-ccccce---EEEEEEecCCCCCCCCHH
Confidence 99999999999999999999999999999999999999999 553 45677 999999 9999988532 23
Q ss_pred hHHHHHHHHHHCCceeccCC--CCEEEEeccCCCCHHHHHHHHHHHHHHHHHH
Q psy6547 211 EVYDVCIKMKDAGLVTKPIS--NNIIRLSPALNITEQELREGLDIIINTINTM 261 (266)
Q Consensus 211 ~~~~~~~~l~~~gi~~~~~~--~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~ 261 (266)
...++++++.++|+++..++ .+.+||.|++.++++++|++++.|++++++.
T Consensus 394 ~~~~i~~~~~~~Glil~~~G~~~nviRi~PPL~is~e~~d~~l~il~~al~~~ 446 (447)
T COG0160 394 LAAKIVARAFERGLLLLTCGPHGNVLRILPPLTISDEELDEGLDILEEALKEA 446 (447)
T ss_pred HHHHHHHHHHHcCCEEeccCCCCcEEEEeCCcccCHHHHHHHHHHHHHHHHhh
Confidence 47789999999999999887 8999999999999999999999999998764
No 4
>TIGR03372 putres_am_tran putrescine aminotransferase. Members of this family are putrescine aminotransferase, as found in Escherichia coli, Erwinia carotovora subsp. atroseptica, and closely related species. This pyridoxal phosphate enzyme, as characterized in E. coli, can act also on cadaverine and, more weakly, spermidine.
Probab=100.00 E-value=6.5e-40 Score=288.10 Aligned_cols=251 Identities=33% Similarity=0.589 Sum_probs=222.9
Q ss_pred CCccCCcCcccccCCCCCCceeecCCCHHHHHHHHhc----CCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCE
Q psy6547 1 MLITTDPTSYNEFGPHMPGYNIIPYNDVDALEAKLKS----NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVL 76 (266)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~v~~~~~~d~~~l~~~l~~----~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~ 76 (266)
+|+++++..++.|.|+.+++..+|++|.+++++.+++ ..++++|++||+++++|.+.++++++++++++|++||++
T Consensus 181 ls~t~~~~~~~~~~p~~~~~~~~p~~d~~~~~~~l~~~~~~~~~vAavIvEpv~g~gG~~~p~~~yl~~l~~lc~~~g~l 260 (442)
T TIGR03372 181 LSATAKPAFRKPFMPLLPGFHHVAFGDIEAMLKALNECKKTGDDVAAIILEPIQGEGGVILPPEGYLPAVRALCDEFGAL 260 (442)
T ss_pred hhccCCcccCCCCCCCCCCCEEeCCCCHHHHHHHHHHHhcCCCcEEEEEEeCccCCCCcccCCHHHHHHHHHHHHHcCCE
Confidence 3566777777889999999999999999999888853 247999999999999999999999999999999999999
Q ss_pred EEEeccccCcCCcCcccccccCCCCcCeeeecccccCCchhhhhheecHHhhhccC--CCCCCCCCCCcHHHHHHHHHHH
Q psy6547 77 FIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLV--PGTHGSTYGGNPLACKLAMTAL 154 (266)
Q Consensus 77 li~De~~~~~~~~g~~~~~~~~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~a~~~~l 154 (266)
+|+||+++||||+|..|+++.+++.||++++||++++|++|+|.+++++++++.+. ...+.+||++||++++++.++|
T Consensus 261 lI~DEV~tG~GRtG~~~a~e~~gv~PDivt~gK~lg~G~~Pigavv~~~~i~~~~~~~~~~~~~T~~gnp~~~Aaa~a~L 340 (442)
T TIGR03372 261 LILDEVQTGMGRTGKMFACEHEGVQPDILCLAKALGGGVMPIGATIATEAVFSVLFDNPFLHTTTFGGNPLACAAALATI 340 (442)
T ss_pred EEEeecccCCCccccchhhhhcCCCCCeeeehhhhcCCcccceEEEecHHHHHhhhccCccccCCCCCCHHHHHHHHHHH
Confidence 99999999999999988999999999999999999999669999999999988773 3468899999999999999999
Q ss_pred HHHhhccHHHHHHHHHHHHHHHhhccccc--C-CCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccC--
Q psy6547 155 DVILEENMIENAYKMGEIFRSELSSPANK--S-KASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPI-- 229 (266)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~--~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~-- 229 (266)
+.++++++.++.++..+++++.|++ +.. + .+.. +++.|. |+.+++.+ ......+++.|+++||++.+.
T Consensus 341 ~~i~~~~l~~~~~~~G~~l~~~L~~-l~~~~~~~i~~-vRG~Gl---~~giel~~--~~~~~~i~~~l~~~Gvl~~~~~~ 413 (442)
T TIGR03372 341 NELLEKNLPAQAAIKGDFLLDGFQQ-LAAEYPDLIIE-ARGKGL---LMAIEFRD--NEIGYAFAKELFQQNILVAGTLN 413 (442)
T ss_pred HHHHhccHHHHHHHHHHHHHHHHHH-HHHhCCCceEE-EecceE---EEEEEeCC--hHHHHHHHHHHHHCCcEEeecCC
Confidence 9999999999999999999999998 543 2 3444 889999 99999976 334678999999999999764
Q ss_pred CCCEEEEeccCCCCHHHHHHHHHHHHHHH
Q psy6547 230 SNNIIRLSPALNITEQELREGLDIIINTI 258 (266)
Q Consensus 230 ~~~~iR~~~~~~~t~~~i~~~~~~l~~~~ 258 (266)
+.+.+|++|++.+|++++|+++++|++++
T Consensus 414 ~~~~lr~~Ppl~~t~~~id~~~~~l~~~~ 442 (442)
T TIGR03372 414 NAKSIRIEPPLTITIEQCALVIKAAKDAL 442 (442)
T ss_pred CCCEEEEECCcccCHHHHHHHHHHHHHhC
Confidence 35799999999999999999999998863
No 5
>PRK11522 putrescine--2-oxoglutarate aminotransferase; Provisional
Probab=100.00 E-value=9e-40 Score=288.99 Aligned_cols=254 Identities=33% Similarity=0.611 Sum_probs=226.9
Q ss_pred CccCCcCcccccCCCCCCceeecCCCHHHHHHHHhc----CCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEE
Q psy6547 2 LITTDPTSYNEFGPHMPGYNIIPYNDVDALEAKLKS----NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLF 77 (266)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~v~~~~~~d~~~l~~~l~~----~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~l 77 (266)
|+++++.....|.|..+++..+|+||.+++++.+++ .+++++|++||+++++|.+.++++++++++++|++||+++
T Consensus 189 s~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~iAavIvEpv~g~~G~~~pp~~yl~~lr~lc~~~g~ll 268 (459)
T PRK11522 189 SATAKSTFRKPFMPLLPGFRHVPFGNIEAMRTALSECKKTGDDVAAVILEPIQGEGGVILPPEGYLTAVRKLCDEFGALL 268 (459)
T ss_pred hhcCCcccccCCCCCCCCCcccCCCCHHHHHHHHHHhhccCCcEEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEE
Confidence 566777777889999999999999999999999863 2479999999999999999999999999999999999999
Q ss_pred EEeccccCcCCcCcccccccCCCCcCeeeecccccCCchhhhhheecHHhhhccC--CCCCCCCCCCcHHHHHHHHHHHH
Q psy6547 78 IADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLV--PGTHGSTYGGNPLACKLAMTALD 155 (266)
Q Consensus 78 i~De~~~~~~~~g~~~~~~~~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~a~~~~l~ 155 (266)
|+||+++|||++|..|+++.+|+.||++++||++++|++|+|.+++++++++.+. ...+.+||+++|++++++.++|+
T Consensus 269 I~DEV~tG~GRtG~~~a~e~~gv~PDivt~gK~lggG~~Pigav~~~~~i~~~~~~~~~~~~~T~~gnp~~~Aaala~L~ 348 (459)
T PRK11522 269 ILDEVQTGMGRTGKMFACEHENVQPDILCLAKALGGGVMPIGATIATEEVFSVLFDNPFLHTTTFGGNPLACAAALATIN 348 (459)
T ss_pred EeccceecCCccchhhhhhccCCCCCEEEechhhhCCCccceeEEEcHHHHHHhccCCcccCCCCCCCHHHHHHHHHHHH
Confidence 9999999999999988999999999999999999999669999999999888764 34688999999999999999999
Q ss_pred HHhhccHHHHHHHHHHHHHHHhhccccc--C-CCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccC--C
Q psy6547 156 VILEENMIENAYKMGEIFRSELSSPANK--S-KASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPI--S 230 (266)
Q Consensus 156 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~--~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~--~ 230 (266)
.++++++.++++++.++++++|++ +.. + .+.. +++.|. ++.+++.+ ......+++.|+++||++.+. +
T Consensus 349 ~i~~~~l~~~~~~~g~~l~~~L~~-l~~~~~~~i~~-VrG~Gl---~~giel~~--~~~~~~i~~~l~~~Gvl~~~~~~~ 421 (459)
T PRK11522 349 VLLEQNLPAQAEQKGDYLLDGFRQ-LAREYPDLVQE-ARGKGM---LMAIEFVD--NEIGYNFASEMFRQRVLVAGTLNN 421 (459)
T ss_pred HHhcchHHHHHHHHHHHHHHHHHH-HHHhCCCceee-EEecee---EEEEEecC--chHHHHHHHHHHHCCeEEEecCCC
Confidence 999999999999999999999998 542 3 3445 889999 99999976 334677999999999999865 4
Q ss_pred CCEEEEeccCCCCHHHHHHHHHHHHHHHHHHh
Q psy6547 231 NNIIRLSPALNITEQELREGLDIIINTINTMA 262 (266)
Q Consensus 231 ~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~~ 262 (266)
.+.+|++|++.+|++++++++++|+++++++.
T Consensus 422 ~~~lr~~Ppl~~t~~~id~~l~~l~~~l~~~~ 453 (459)
T PRK11522 422 AKTIRIEPPLTLTIEQCEQVLKAARKALAAMR 453 (459)
T ss_pred CCEEEEECCccCCHHHHHHHHHHHHHHHHHHH
Confidence 58999999999999999999999999998764
No 6
>TIGR03246 arg_catab_astC succinylornithine transaminase family. Members of the seed alignment for this protein family are the enzyme succinylornithine transaminase (EC 2.6.1.81), which catalyzes the third of five steps in arginine succinyltransferase (AST) pathway, an ammonia-releasing pathway of arginine degradation. All seed alignment sequences are found within arginine succinyltransferase operons, and all proteins that score above 820.0 bits should function as succinylornithine transaminase. However, a number of sequences extremely closely related in sequence, found in different genomic contexts, are likely to act in different biological processes and may act on different substrates. This model is desigated subfamily rather than equivalog, pending further consideration, for this reason.
Probab=100.00 E-value=1.6e-39 Score=284.59 Aligned_cols=252 Identities=36% Similarity=0.597 Sum_probs=222.8
Q ss_pred CccCCcCcccccCCCCCCceeecCCCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEec
Q psy6547 2 LITTDPTSYNEFGPHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADE 81 (266)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~v~~~~~~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De 81 (266)
+.++.+...+.|.|..+++..++|||++++++++ .+++++|++||+++++|.+.++.+++++|+++|++||+++|+||
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l--~~~~aavi~Epi~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DE 220 (397)
T TIGR03246 143 SVGGQPKYSQGFAPLPGGIKHAPYNDLAAAKALI--SDKTCAVIVEPIQGEGGVVPADPAFLKGLRELCDRHNALLIFDE 220 (397)
T ss_pred HhcCCcccccCCCCCCCceEEeCCCCHHHHHHHh--ccCeEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEec
Confidence 3455666677888999999999999999999999 35799999999999999888899999999999999999999999
Q ss_pred cccCcCCcCcccccccCCCCcCeeeecccccCCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHhhcc
Q psy6547 82 VQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEEN 161 (266)
Q Consensus 82 ~~~~~~~~g~~~~~~~~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~ 161 (266)
+|+|+|++|..++...+++.||++++||++++| +|+|++++++++++.+....+..+|+++|++++++.++|+.++.++
T Consensus 221 v~tG~Gr~G~~~a~~~~gv~pDi~t~~K~lggG-~pigav~~~~~i~~~~~~~~~~~t~~~~p~~~aaa~a~l~~~~~~~ 299 (397)
T TIGR03246 221 VQTGVGRTGELYAYMHYGVTPDILTSAKALGGG-FPIGAMLTTTEIAAHLKVGTHGTTYGGNPLACAVAGKVLDLVNTPE 299 (397)
T ss_pred hhhcCCccccchhhhhcCCCCCEEEeehhhhCC-cceeEEEEcHHHHHhccCCCcCCCCCCCHHHHHHHHHHHHHHhhcc
Confidence 999999999988878889999999999999999 9999999999999988776778899999999999999999988888
Q ss_pred HHHHHHHHHHHHHHHhhccccc--CCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccCCCCEEEEecc
Q psy6547 162 MIENAYKMGEIFRSELSSPANK--SKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPISNNIIRLSPA 239 (266)
Q Consensus 162 ~~~~~~~~~~~l~~~l~~~~~~--~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~iR~~~~ 239 (266)
+.+++++++++++++|++ +.. ..+.. +++.|. ++.+.+.+........+++.|+++|+++.+.+.+++|++|+
T Consensus 300 l~~~~~~~~~~l~~~L~~-l~~~~~~~~~-vrg~G~---~~~i~~~~~~~~~~~~~~~~l~~~Gv~~~~~g~~~lR~~p~ 374 (397)
T TIGR03246 300 LLAGVKQRHDLFVDGLEK-INARYNVFSE-IRGKGL---LIGAVLTEAYQGKAKQFVNAAAEEGVIALIAGPNVVRFAPS 374 (397)
T ss_pred HHHHHHHHHHHHHHHHHH-HHhcCCCeEe-eecCce---EEEEEEcCchhhHHHHHHHHHHHCCeEEeecCCCEEEEeCC
Confidence 999999999999999998 543 22344 778888 88888764212256789999999999999877789999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHH
Q psy6547 240 LNITEQELREGLDIIINTINTM 261 (266)
Q Consensus 240 ~~~t~~~i~~~~~~l~~~~~~~ 261 (266)
+.+|++++++++++|++++.+.
T Consensus 375 ~~~t~~~i~~~~~~l~~~l~~~ 396 (397)
T TIGR03246 375 LVISDDDIDEGLARFERAIEQV 396 (397)
T ss_pred CCCCHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999998763
No 7
>COG0161 BioA Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Coenzyme metabolism]
Probab=100.00 E-value=2.7e-39 Score=277.13 Aligned_cols=259 Identities=35% Similarity=0.591 Sum_probs=226.7
Q ss_pred CCccCCcCcc-cccCCCCCCceeecCCC-----------------HHHHHHHHhcC--CCEEEEEEccccCC-CCcccCC
Q psy6547 1 MLITTDPTSY-NEFGPHMPGYNIIPYND-----------------VDALEAKLKSN--PNICAFMVEPIQGE-AGAVVPD 59 (266)
Q Consensus 1 ~~~~~~~~~~-~~~~~~~~~v~~~~~~d-----------------~~~l~~~l~~~--~~~~~i~~~~~~~~-~g~~~~~ 59 (266)
+|.++-+... ..|.++.+++.+++++. +++||+++.++ ++++++++||+.+. +|+++++
T Consensus 155 ~Sv~g~~~~~~~~~~~ll~~~~~~~~P~~y~~~~~~~~~~~~~~~a~~le~~i~~~g~~~IAAfI~EPv~g~agG~~~pp 234 (449)
T COG0161 155 MSVGGPVALRHAFYDPLLPEVLHLPAPYAYRRGFFGEGDEEFAEAADELEALILEHGPETIAAFIVEPVVGGAGGMLVPP 234 (449)
T ss_pred eeccCchhhhhhhccccccCceecCCCcccccCCCCCChHHHHHHHHHHHHHHHhcCcccEEEEEecccccccCCcccCC
Confidence 4566655555 44677888888888664 57788888763 38999999998666 9999999
Q ss_pred hHHHHHHHHHHHhcCCEEEEeccccCcCCcCcccccccCCCCcCeeeecccccCCchhhhhheecHHhhhccCC-----C
Q psy6547 60 DGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVP-----G 134 (266)
Q Consensus 60 ~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~~~~~~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~-----~ 134 (266)
+.++++++++|++||+++|+||+.+||||+|..|+.+.+++.||+++++|++++|++|+|.+++++++.+.+.. .
T Consensus 235 ~~Yl~~vr~iC~ky~ILlI~DEV~tGFGRTG~~FA~e~~gi~PDi~~~aKGLT~GY~Pl~a~l~~~~I~~~~~~~~~~~f 314 (449)
T COG0161 235 PGYLKRVREICDKYGILLIADEVATGFGRTGKMFACEHAGIVPDILCLAKGLTGGYLPLSAVLTSDRIYEAFSDGDAGAF 314 (449)
T ss_pred hHHHHHHHHHHHHcCcEEEeecceeCCCcCchhhhhhhcCCCCCeeeecccccccchhhHhHhhhHHHHHHHhcccCCee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999887754 3
Q ss_pred CCCCCCCCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhcccc-cCCCcccEEecCccceeeEEEEeeCccc---
Q psy6547 135 THGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSSPAN-KSKASFKLSSGGLKKSINTLILSVSAIL--- 210 (266)
Q Consensus 135 ~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~--- 210 (266)
.|+.||++||++++++++.|+.++++++.++.++...+++++|++.+. .+.+.+ +++.|+ +..+++..+...
T Consensus 315 ~HG~TYsghPlacAaAla~L~i~e~e~l~~~~~~~~~~l~~~L~~~l~~~p~Vgd-VR~~Gl---i~~iElv~d~~t~~~ 390 (449)
T COG0161 315 MHGHTYSGNPLACAAALANLDILEEEDLLERVAEIGAYLQAGLQAALADHPLVGD-VRGLGL---IGAIELVADKATKTP 390 (449)
T ss_pred ccCCccccCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhcccCCcEEE-eeccce---EEEEEEecccccccc
Confidence 789999999999999999999999999999999999999999997333 356777 999999 999998864321
Q ss_pred ----hHHHHHHHHHHCCceeccCCCCEEEEeccCCCCHHHHHHHHHHHHHHHHHHhhc
Q psy6547 211 ----EVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINTMAAK 264 (266)
Q Consensus 211 ----~~~~~~~~l~~~gi~~~~~~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~~~~ 264 (266)
-...+.+.+.++|++++|. ++.+-++|++.+|+++++++++++.+++++....
T Consensus 391 f~~~~~~~~~~~~~e~Gl~iRp~-g~~i~~~PPliit~~eid~l~~~l~~al~~~~~~ 447 (449)
T COG0161 391 FEARVGARVRAAALERGLLIRPL-GDVIYLMPPLIITREEIDELVDALREALDETLAD 447 (449)
T ss_pred hhhhHHHHHHHHHHHCCeEEeec-CCEEEEcCCccCCHHHHHHHHHHHHHHHHHHHhc
Confidence 1567888899999999999 6799999999999999999999999999886543
No 8
>PRK12381 bifunctional succinylornithine transaminase/acetylornithine transaminase; Provisional
Probab=100.00 E-value=8.9e-39 Score=280.70 Aligned_cols=255 Identities=34% Similarity=0.582 Sum_probs=225.0
Q ss_pred CccCCcCcccccCCCCCCceeecCCCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEec
Q psy6547 2 LITTDPTSYNEFGPHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADE 81 (266)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~v~~~~~~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De 81 (266)
+++++|.....|.|+.++++.++|||++++++.+ .+++++|++||+++++|.+.++.+++++|+++|++||+++|+||
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l--~~~~aaviiEPv~~~gg~~~~~~~~l~~l~~l~~~~~~llI~DE 224 (406)
T PRK12381 147 SAGGQPKYSQDFAPLPPDIRHAAYNDLNSASALI--DDQTCAVIVEPIQGEGGVIPADKAFLQGLRELCDRHNALLIFDE 224 (406)
T ss_pred hhcCCcccccCCCCCCCCeeEeCCCCHHHHHHhc--cCCeeEEEEeCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEcc
Confidence 4566777777889999999999999999999999 34799999999999999887899999999999999999999999
Q ss_pred cccCcCCcCcccccccCCCCcCeeeecccccCCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHhhcc
Q psy6547 82 VQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEEN 161 (266)
Q Consensus 82 ~~~~~~~~g~~~~~~~~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~ 161 (266)
+|+|++++|..++...+++.||++++||++++| +|+|++++++++++.+....+..+++++++.++++.++|+.++.++
T Consensus 225 v~tG~gr~G~~~~~~~~~v~pDi~t~sK~l~gG-~~ig~~~~~~~~~~~~~~~~~~~t~~~~pl~~aaa~a~l~~l~~~~ 303 (406)
T PRK12381 225 VQTGVGRTGELYAYMHYGVTPDVLTTAKALGGG-FPIGAMLTTEKCASVMTVGTHGTTYGGNPLASAVAGKVLELINTPE 303 (406)
T ss_pred hhhCCCCCcchhhhHhhCCCCCEEEehhhhhCC-CceEEEEEcHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHhhcc
Confidence 999999999877777788999999999999999 9999999999999988877788899999999999999999998888
Q ss_pred HHHHHHHHHHHHHHHhhccccc--CCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccCCCCEEEEecc
Q psy6547 162 MIENAYKMGEIFRSELSSPANK--SKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPISNNIIRLSPA 239 (266)
Q Consensus 162 ~~~~~~~~~~~l~~~l~~~~~~--~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~iR~~~~ 239 (266)
+.++++++.+++++.|++ +.. ..+.. +++.|. ++++.+.+.....+..+++.|+++||++.+.+.+.+|++|+
T Consensus 304 ~~~~~~~~~~~l~~~L~~-l~~~~~~~~~-vrg~Gl---~~~~~l~~~~~~~~~~~~~~l~~~Gv~v~~~g~~~lRl~p~ 378 (406)
T PRK12381 304 MLNGVKQRHDWFVERLNT-INARYGLFSE-IRGLGL---LIGCVLNAEYAGKAKQISQEAAKAGVMVLIAGPNVVRFAPA 378 (406)
T ss_pred HHHHHHHHHHHHHHHHHH-HHhhCCCEEE-EecCeE---EEEEEecCchhhHHHHHHHHHHHCCcEEeeCCCCEEEEeCC
Confidence 999999999999999998 542 22333 778899 99999865211246788999999999998876789999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHhhc
Q psy6547 240 LNITEQELREGLDIIINTINTMAAK 264 (266)
Q Consensus 240 ~~~t~~~i~~~~~~l~~~~~~~~~~ 264 (266)
+.+|++++++++++|+++++++.++
T Consensus 379 ~~~t~~~i~~~~~~l~~~l~~~~~~ 403 (406)
T PRK12381 379 LNISEEEITTGLDRFARACERFVSR 403 (406)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999887654
No 9
>PLN00144 acetylornithine transaminase
Probab=100.00 E-value=9.6e-39 Score=277.84 Aligned_cols=250 Identities=34% Similarity=0.590 Sum_probs=223.0
Q ss_pred CccCCcCcccccCCCCCCceeecCCCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEec
Q psy6547 2 LITTDPTSYNEFGPHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADE 81 (266)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~v~~~~~~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De 81 (266)
|.++++.....|.|..++++++|+||++++++.++. .++++|++||+++++|.+.++++++++|+++|++||+++|+||
T Consensus 130 s~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~-~~~aavi~eP~q~~gg~~~~~~~~~~~l~~l~~~~g~llI~DE 208 (382)
T PLN00144 130 ALTSKEQYRTPFEPLMPGVTFVEYGNLEAARKLIQK-GKTAAVFVEPVQGEGGIYPATKEFLQGLRALCDEAGALLVFDE 208 (382)
T ss_pred hcCCCccccccCCCCCCCeEEeCCCCHHHHHHhcCC-CCeEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEec
Confidence 556677777789999999999999999999999943 4799999999999988888899999999999999999999999
Q ss_pred cccCcCCcCcccccccCCCCcCeeeecccccCCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHhhcc
Q psy6547 82 VQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEEN 161 (266)
Q Consensus 82 ~~~~~~~~g~~~~~~~~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~ 161 (266)
+|++|+++|..++.+.+++.||++++||++++| +|+|++++++++++.+....+..|++++|++++++.++|+++++++
T Consensus 209 v~tg~gr~g~~~~~~~~~~~PDi~t~sK~l~~G-~pig~v~~~~~~~~~~~~~~~~~T~~~~pl~~aaa~a~l~~i~~~~ 287 (382)
T PLN00144 209 VQCGLGRTGYLWAHEAYGVEPDIMTLAKPLAGG-LPIGAVLVTEKVASAINPGDHGSTFAGGPLVCNAALAVLDKISKPG 287 (382)
T ss_pred hhhCCCccchHhhhhhcCCCCCEEEecccccCC-cceEEEEEcHHHHhccCCCCCCCCCCCCHHHHHHHHHHHHHHhhch
Confidence 999999999877777789999999999999999 9999999999999988877788999999999999999999999899
Q ss_pred HHHHHHHHHHHHHHHhhcccccC-CCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccCC-CCEEEEecc
Q psy6547 162 MIENAYKMGEIFRSELSSPANKS-KASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPIS-NNIIRLSPA 239 (266)
Q Consensus 162 ~~~~~~~~~~~l~~~l~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~-~~~iR~~~~ 239 (266)
+.+++++.++++++.+++.+... .+.. +++.|. ++|+.+.. ....+++.++++||.+.+.+ .+.+|++|+
T Consensus 288 ~~~~~~~~g~~l~~~l~~~~~~~~~~~~-vrg~G~---~~~l~l~~----~~~~~~~~~~~~Gv~i~~~~~~~~lrl~p~ 359 (382)
T PLN00144 288 FLASVAKKGEYLRELLRRKLGGNPHVKE-VRGVGL---LVGIQLDV----PAGPLVDACRDSGLLVLTAGKGDVVRLVPP 359 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCcee-eecCce---EEEEEecC----ccHHHHHHHHHCCeEEeecCCCCEEEEeCC
Confidence 99999999999999998744433 3434 778999 99999933 45789999999999999864 489999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHH
Q psy6547 240 LNITEQELREGLDIIINTINTM 261 (266)
Q Consensus 240 ~~~t~~~i~~~~~~l~~~~~~~ 261 (266)
...+++++++++++|++++.+.
T Consensus 360 ~~~~~~~i~~~~~~l~~~l~~~ 381 (382)
T PLN00144 360 LVISEAELEQAVEILADCLPAL 381 (382)
T ss_pred CccCHHHHHHHHHHHHHHHHhc
Confidence 9899999999999999998753
No 10
>PRK06943 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=100.00 E-value=1.2e-38 Score=281.76 Aligned_cols=258 Identities=27% Similarity=0.457 Sum_probs=223.9
Q ss_pred CCccCCcCcccccCCCCCCceeecCCC-----------------HHHHHHHHhcC-CCEEEEEEcc-ccCCCCcccCChH
Q psy6547 1 MLITTDPTSYNEFGPHMPGYNIIPYND-----------------VDALEAKLKSN-PNICAFMVEP-IQGEAGAVVPDDG 61 (266)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~v~~~~~~d-----------------~~~l~~~l~~~-~~~~~i~~~~-~~~~~g~~~~~~~ 61 (266)
+|+++++..++.|.|+.+++..+++++ +++++++++++ +++++|++|| +++.+|.++++++
T Consensus 164 ls~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~iAAviiEPvvqg~gG~~~~~~~ 243 (453)
T PRK06943 164 LGVTDVALFKDAYDPLIRHAHVVASPDARGARPGETAADVAARALADVRRLFAERAGKIAALIVEPLVQCAAGMAMHDPS 243 (453)
T ss_pred hcccCChhhhcccccCCCCCEEECCCCccccccCCCHHHHHHHHHHHHHHHHHhCCCceEEEEEeccccccCCcccCCHH
Confidence 456777777788999888888887764 47788888653 4899999999 5999999999999
Q ss_pred HHHHHHHHHHhcCCEEEEeccccCcCCcCcccccccCCCCcCeeeecccccCCchhhhhheecHHhhhccCC------CC
Q psy6547 62 YLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVP------GT 135 (266)
Q Consensus 62 ~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~~~~~~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~------~~ 135 (266)
++++++++|++||+++|+||+++||||+|..|+++.+|+.||+++++|+++||++|+|.+++++++++.+.. ..
T Consensus 244 yl~~lr~lc~~~gillI~DEV~TG~GRtG~~fa~~~~gv~PDivt~gKgl~gG~~Pi~av~~~~ei~~~~~~~~~~~~~~ 323 (453)
T PRK06943 244 YLRGLRALCDRYGVHLIADEIAVGCGRTGTFFACEQAGVWPDFLCLSKGISGGYLPLSLVLSRDAIFAAFYDDDVTRGFL 323 (453)
T ss_pred HHHHHHHHHHHcCCEEEeechhhCCCCCcchhHHHhCCCCCCeEeeehhhccCcccceEEEEcHHHHHhhcccCccCCcc
Confidence 999999999999999999999999999999999999999999999999999995599999999999887752 24
Q ss_pred CCCCCCCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCcc---chH
Q psy6547 136 HGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAI---LEV 212 (266)
Q Consensus 136 ~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~---~~~ 212 (266)
+.+||++||++++++.++|+.++++++.+++++..++++++|+++...+.+.. +++.|+ ++.+++..+.. ...
T Consensus 324 ~~~T~~gnpl~~aaa~a~L~~i~~~~l~~~~~~~G~~l~~~L~~l~~~~~v~~-vrG~Gl---~~gvel~~~~~~~~~~~ 399 (453)
T PRK06943 324 HSHSYTGNPLACRAALATLDLFAEDDVLARNARKSARLRAALAPLAAHPQVRH-LRQRGT---IFAFDVALDGDAARTFS 399 (453)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCCEEe-Eecccc---EEEEEEccCCCcchHHH
Confidence 78899999999999999999999999999999999999999998323345565 899999 99999963211 125
Q ss_pred HHHHHHHHHCCceeccCCCCEEEEeccCCCCHHHHHHHHHHHHHHHHHHhh
Q psy6547 213 YDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINTMAA 263 (266)
Q Consensus 213 ~~~~~~l~~~gi~~~~~~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~~~ 263 (266)
..+++.+.++|+++.+.+ +.+|++|++.+|++++++++++|+++++++..
T Consensus 400 ~~i~~~~~~~Gll~~~~g-~~l~~~Ppl~it~~eid~~~~~l~~al~~~~~ 449 (453)
T PRK06943 400 RRFFEAALERELLLRPIG-TTVYLMPPYVLDDDEIAWLAERTRATLDATLA 449 (453)
T ss_pred HHHHHHHHHCCcEEEecC-CEEEEeCCCcCCHHHHHHHHHHHHHHHHHHHH
Confidence 678899999999998864 57999999999999999999999999988643
No 11
>PRK05965 hypothetical protein; Provisional
Probab=100.00 E-value=1.1e-38 Score=282.76 Aligned_cols=256 Identities=32% Similarity=0.501 Sum_probs=220.9
Q ss_pred CccCCcCcccccCCCCCCceeecCC---------C--------HHHHHHHHhcC--CCEEEEEEccccCCCCcccCChHH
Q psy6547 2 LITTDPTSYNEFGPHMPGYNIIPYN---------D--------VDALEAKLKSN--PNICAFMVEPIQGEAGAVVPDDGY 62 (266)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~v~~~~~~---------d--------~~~l~~~l~~~--~~~~~i~~~~~~~~~g~~~~~~~~ 62 (266)
|.+++|..+..|.|+.+.+..++++ | ++++++.+++. +++++|++||+++.+|.+++++++
T Consensus 158 s~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~iAAvIvEPiqg~gG~~~p~~~y 237 (459)
T PRK05965 158 GLTALPAFHRGFDLPLPWQHKIPSPYPYRNPVGDDPQAIIAASVAALRAKVAELGADNVAAFFCEPIQGSGGVIVPPKGW 237 (459)
T ss_pred HhcCCchhhcccCCCCCCCEEcCCCcccccccCCChHHHHHHHHHHHHHHHHhcCCCceEEEEEeccccCCCCccCCHHH
Confidence 4566676677788877777766543 3 26788888642 479999999999999999999999
Q ss_pred HHHHHHHHHhcCCEEEEeccccCcCCcCcccccccCCCCcCeeeecccccCCchhhhhheecHHhhhccCC-------CC
Q psy6547 63 LKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVP-------GT 135 (266)
Q Consensus 63 l~~l~~l~~~~g~~li~De~~~~~~~~g~~~~~~~~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~-------~~ 135 (266)
+++|+++|++||+++|+||+++||||+|..|+++.+++.||+++++|+++||++|+|.+++++++++.+.. ..
T Consensus 238 l~~lr~lc~~~gillI~DEV~tGfGRtG~~~a~~~~gv~PDiv~~gKgl~gG~~Pi~av~~~~~i~~~~~~~~~~~~~~~ 317 (459)
T PRK05965 238 LKAMREACRELGILFVADEVITGFGRTGPLFACEAEGVVPDLMTVAKGLTSGYVPMGAVLMSDHVYQGIADGAGAAAPVG 317 (459)
T ss_pred HHHHHHHHHHcCCEEEEechhccCccCchhhhHhhcCCCCCeEEechhhccCCcceeEEEEcHHHHHHHhcccccccccc
Confidence 99999999999999999999999999999999999999999999999999995599999999999887642 35
Q ss_pred CCCCCCCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccc-CCCcccEEecCccceeeEEEEeeCc----c-
Q psy6547 136 HGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSSPANK-SKASFKLSSGGLKKSINTLILSVSA----I- 209 (266)
Q Consensus 136 ~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~----~- 209 (266)
+.+||+++|++++++.++|+.++++++.+++++..++++++|++ +.. +.+.. +++.|+ ++.+++.... .
T Consensus 318 h~~T~~gnpl~~Aaa~a~L~~l~~~~l~~~~~~~g~~l~~~l~~-l~~~~~v~~-vrG~Gl---~~gie~~~~~~~~~~~ 392 (459)
T PRK05965 318 HGYTYSAHPVSAAVGLEVLRLYHEGGLLANGQKAGPRFAAGLDA-LRAHPLVGD-VRGRGL---LGALELVADKATKTPF 392 (459)
T ss_pred ccCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHh-hccCCCEEE-Eeecce---EEEEEEeccccccCCC
Confidence 88999999999999999999999999999999999999999998 443 44555 899999 9999986421 1
Q ss_pred ----chHHHHHHHHHHCCceeccCCCCEEEEeccCCCCHHHHHHHHHHHHHHHHHHh
Q psy6547 210 ----LEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINTMA 262 (266)
Q Consensus 210 ----~~~~~~~~~l~~~gi~~~~~~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~~ 262 (266)
.....+.+.++++|+++.+.+.+++|++|++.+|++++++++++|+++++++.
T Consensus 393 ~~~~~~~~~i~~~~~~~Gll~~~~g~~~i~~~PpL~it~~ei~~~~~~l~~~l~~~~ 449 (459)
T PRK05965 393 DAALDPADRIFDRAYANGLVFRAFGDGVLGFAPALCCTEGEFDLIFERTRKTLDDVL 449 (459)
T ss_pred CchhHHHHHHHHHHHhCCeEEEecCCcEEEEECCCcCCHHHHHHHHHHHHHHHHHHh
Confidence 12456888899999999987778999999999999999999999999998763
No 12
>PRK04612 argD acetylornithine transaminase protein; Provisional
Probab=100.00 E-value=2e-38 Score=277.37 Aligned_cols=256 Identities=36% Similarity=0.587 Sum_probs=226.9
Q ss_pred CccCCcCcccccCCCCCCceeecCCCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEec
Q psy6547 2 LITTDPTSYNEFGPHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADE 81 (266)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~v~~~~~~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De 81 (266)
|++++|..+..|.|+.+++..++++|+++++++++ ..+++++++||+++++|.+.++++++++|+++|++||+++|+||
T Consensus 150 s~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~-~~~~aavi~eP~~~~gg~~~~~~~~l~~l~~l~~~~g~llI~DE 228 (408)
T PRK04612 150 TATAQPKYQEGYEPLPGGFRYVDFNDVEALEAAMA-GGDVAAVMLEPIQGEGGVMPAAPGFLARVRALCDQHDALLVLDE 228 (408)
T ss_pred HhcCCcccccCCCCCCCCceEcCCCCHHHHHHhhC-CCCEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEec
Confidence 55677777888998888999999999999999995 34799999999999889888889999999999999999999999
Q ss_pred cccCcCCcCcccccccCCCCcCeeeecccccCCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHhhcc
Q psy6547 82 VQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEEN 161 (266)
Q Consensus 82 ~~~~~~~~g~~~~~~~~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~ 161 (266)
+|+||+++|..+....+++.||+.++||++++| +|+|++++++++.+.+....+..+|+++|++++++.++|+.+++++
T Consensus 229 v~tg~gr~G~~~a~~~~~~~pdi~t~~K~l~~G-~piga~~~~~~~~~~~~~~~~~~t~~~~p~~~aaa~a~L~~~~~~~ 307 (408)
T PRK04612 229 IQCGMGRTGTLFAHWQEQVTPDIVTLAKALGGG-FPIGAMLAGPKVAETMQFGAHGTTFGGNPLAAAVARVALRKLASPQ 307 (408)
T ss_pred cccCCCcCCchhhhhhcCCCCCEEEEcchhcCC-CceEEEEECHHHHhhhcCCCcCCCCCCCHHHHHHHHHHHHHHHhcc
Confidence 999999999877766678999999999999999 9999999999888888776788899999999999999999999899
Q ss_pred HHHHHHHHHHHHHHHhhccccc--CCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccCCCCEEEEecc
Q psy6547 162 MIENAYKMGEIFRSELSSPANK--SKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPISNNIIRLSPA 239 (266)
Q Consensus 162 ~~~~~~~~~~~l~~~l~~~~~~--~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~iR~~~~ 239 (266)
+.++++++.++++++|++ +.. ..+.. +++.|+ |+.+++.......+.++++.|.++|+++.+.+.+.+|+.|+
T Consensus 308 l~~~~~~~g~~l~~~l~~-l~~~~~~i~~-vrg~Gl---~~~i~~~~~~~~~a~~i~~~l~~~Gvlv~~~g~~~lRl~Pp 382 (408)
T PRK04612 308 IAANVARQSAALRAGLEA-LNAEFGVFAQ-VRGRGL---MLGAVLAPAHAGQAGAILDLAAEHGLLLLQAGPDVLRFVPA 382 (408)
T ss_pred HHHHHHHHHHHHHHHHHH-HHhhCCCeee-eeccce---EEEEEecCchhhHHHHHHHHHHHCCeEEeeCCCCEEEEcCC
Confidence 999999999999999998 543 33444 899999 99999864212346788999999999999887799999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHhhc
Q psy6547 240 LNITEQELREGLDIIINTINTMAAK 264 (266)
Q Consensus 240 ~~~t~~~i~~~~~~l~~~~~~~~~~ 264 (266)
+.++++++++++++|++++.+...+
T Consensus 383 l~it~eeid~~l~~l~~~l~~~~~~ 407 (408)
T PRK04612 383 LNLTDAELADGLARLRLALADYVAQ 407 (408)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999887655
No 13
>PRK07482 hypothetical protein; Provisional
Probab=100.00 E-value=3.5e-38 Score=279.73 Aligned_cols=257 Identities=25% Similarity=0.431 Sum_probs=219.9
Q ss_pred CccCCcCcccccCCCCCCceeecCC------------------CHHHHHHHHhc--CCCEEEEEEccccCCCCcccCChH
Q psy6547 2 LITTDPTSYNEFGPHMPGYNIIPYN------------------DVDALEAKLKS--NPNICAFMVEPIQGEAGAVVPDDG 61 (266)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~v~~~~~~------------------d~~~l~~~l~~--~~~~~~i~~~~~~~~~g~~~~~~~ 61 (266)
|+++++..+..|.|+.+++.+++++ +++++++++++ .+++++|++||+++.+|.++++++
T Consensus 162 s~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~iAAvi~EPvqg~gG~~~~~~~ 241 (461)
T PRK07482 162 SLTGLSLFHQHFDLPIARVLHTEAPHYYRRADAGMSEEQFSAYCADELEELILAEGPDTIAAFIAEPVLGTGGIVPPPAG 241 (461)
T ss_pred hccCCchhhhccCCCCCCCEEcCCCccccccccCCCHHHHHHHHHHHHHHHHHhcCCCcEEEEEECCccCCCCCcCCCHH
Confidence 5566676777888888888877654 25788888853 247999999999999999999999
Q ss_pred HHHHHHHHHHhcCCEEEEeccccCcCCcCcccccccCCCCcCeeeecccccCCchhhhhheecHHhhhccCC-------C
Q psy6547 62 YLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVP-------G 134 (266)
Q Consensus 62 ~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~~~~~~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~-------~ 134 (266)
++++|+++|++||+++|+||+++||||+|..|+++.+|+.||+++++|+++||++|+|.+++++++++.+.. .
T Consensus 242 yl~~lr~lc~~~giLlI~DEV~tGfGRtG~~~a~~~~gv~PDiv~~gKgl~gG~~Pi~av~~~~~i~~~~~~~~~~~~~~ 321 (461)
T PRK07482 242 YWPAIQAVLKKYDILLIADEVVTGFGRLGSMFGSDHYGIEPDLITVAKGLTSAYAPLSGSIVGEKVWDVLEQGSDEHGAI 321 (461)
T ss_pred HHHHHHHHHHHhCCEEEEeccccCCCcCcchhhHHhcCCCCCEEEEccccccCccccceeeecHHHHHHHhcccccCCcc
Confidence 999999999999999999999999999999999999999999999999999994499999999998876642 2
Q ss_pred CCCCCCCCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccc-CCCcccEEecCccceeeEEEEeeCcc----
Q psy6547 135 THGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSSPANK-SKASFKLSSGGLKKSINTLILSVSAI---- 209 (266)
Q Consensus 135 ~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~---- 209 (266)
.+.+||++||++++++.++|+.++++++.++++++.++++++|++.... +.+.. +++.|+ ++.+++.....
T Consensus 322 ~h~~T~~gnpl~~Aaa~a~L~~~~~~~l~~~~~~~g~~l~~~L~~l~~~~~~v~~-vrG~Gl---m~giel~~~~~~~~~ 397 (461)
T PRK07482 322 GHGWTYSGHPICAAAALANLDILERENLVGNAAEVGAYFRARLRAAFGDHPLVGE-VRGVGM---LAAVEFVADRDDRTP 397 (461)
T ss_pred ccCCCCCcCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCEEE-Eeecee---EEEEEeccCCCcCCC
Confidence 5788999999999999999999999999999999999999999983333 33444 899999 99999864211
Q ss_pred c-----hHHHHHHHHHHCCceeccC-CCCEEEEeccCCCCHHHHHHHHHHHHHHHHHHh
Q psy6547 210 L-----EVYDVCIKMKDAGLVTKPI-SNNIIRLSPALNITEQELREGLDIIINTINTMA 262 (266)
Q Consensus 210 ~-----~~~~~~~~l~~~gi~~~~~-~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~~ 262 (266)
. ....++..|+++|+++.+. .++.+|+.|++.+|++|+++++++++++++++.
T Consensus 398 ~~~~~~~~~~i~~~~~~~Gvl~~~~~~~~~i~~~Ppl~it~~ei~~~~~~l~~~l~~~~ 456 (461)
T PRK07482 398 FDPALKIGPQVSAAALERGVIARAMPHGDILGFAPPLVLTRAEADEIVAIAKDAVDEVL 456 (461)
T ss_pred CChhhHHHHHHHHHHHHCCcEEecCCCCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 1 1457889999999998753 368999999999999999999999999998764
No 14
>PRK04073 rocD ornithine--oxo-acid transaminase; Provisional
Probab=100.00 E-value=3.6e-38 Score=276.28 Aligned_cols=246 Identities=44% Similarity=0.817 Sum_probs=217.5
Q ss_pred CccCCcCcccccCCCCCCceeecCCCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEec
Q psy6547 2 LITTDPTSYNEFGPHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADE 81 (266)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~v~~~~~~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De 81 (266)
+++.+|.....|.|..+++..++++|++++++.+ .+++++|++||++|++|.+..+.+++++|+++|++||+++|+||
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i--~~~~~~viiep~~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DE 227 (396)
T PRK04073 150 SLSSEEEYKRGFGPMLPGIKKIPYGDLEALKAAI--TPNTAAFLVEPIQGEAGINIPPEGFLKAARELCKEENVLFIADE 227 (396)
T ss_pred hhcCCcccccCCCCCCCCceEeCCCCHHHHHHhc--ccCeEEEEEcCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEec
Confidence 4556666677788888999999999999999999 45789999999999999997788899999999999999999999
Q ss_pred cccCcCCcCcccccccCCCCcCeeeecccccCCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHhhcc
Q psy6547 82 VQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEEN 161 (266)
Q Consensus 82 ~~~~~~~~g~~~~~~~~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~ 161 (266)
+|++|++.|..++.+..++.||++++||++++|.+|+|++++++++++.+....+..++++++++++++.++|+.+++++
T Consensus 228 v~~g~g~~g~~~~~~~~~~~pdi~~~sK~lg~gg~~ig~~~~~~~i~~~~~~~~~~~t~~~~~~~~aaa~aaL~~~~~~~ 307 (396)
T PRK04073 228 IQTGLGRTGKLFACDWDNVTPDMYILGKALGGGVFPISCVAANRDILGVFTPGSHGSTFGGNPLACAVSIAALEVLEEEK 307 (396)
T ss_pred chhCCCcCcHHHHhhhcCCCCCEEEecccccCCCCcceEEEEcHHHHhhhcCCCCCCCCCCCHHHHHHHHHHHHHHHhcC
Confidence 99999998877666777889999999999995548999999999999988776788899999999999999999988888
Q ss_pred HHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccCCCCEEEEeccCC
Q psy6547 162 MIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPISNNIIRLSPALN 241 (266)
Q Consensus 162 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~iR~~~~~~ 241 (266)
+.++.+++++++.+.|++ +....+.. .++.|. |+++.+.. ++.+++++|+++||++.+.+.+++|++|++.
T Consensus 308 l~~~~~~~~~~l~~~L~~-l~~~~i~~-~~~~g~---~~~~~~~~----~~~~~~~~l~~~Gv~~~~~~~~~iRi~p~l~ 378 (396)
T PRK04073 308 LPERSLELGEYFKEQLKE-IDNPMIKE-VRGRGL---FIGVELNE----PARPYCEALKEEGLLCKETHETVIRFAPPLV 378 (396)
T ss_pred HHHHHHHHHHHHHHHHHh-hcCCcccc-eecceE---EEEEEecc----hHHHHHHHHHHCCeEEecCCCCEEEEECCcc
Confidence 999999999999999998 65444444 677888 99988865 5678999999999999887678999999999
Q ss_pred CCHHHHHHHHHHHHHHH
Q psy6547 242 ITEQELREGLDIIINTI 258 (266)
Q Consensus 242 ~t~~~i~~~~~~l~~~~ 258 (266)
+|++++++++++|++++
T Consensus 379 ~t~e~i~~~~~~l~~~l 395 (396)
T PRK04073 379 ITKEELDWAFEKIKAVL 395 (396)
T ss_pred cCHHHHHHHHHHHHHHh
Confidence 99999999999999875
No 15
>PRK01278 argD acetylornithine transaminase protein; Provisional
Probab=100.00 E-value=4.5e-38 Score=275.26 Aligned_cols=247 Identities=38% Similarity=0.696 Sum_probs=217.3
Q ss_pred ccCCcCcccccCCCCCCceeecCCCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEecc
Q psy6547 3 ITTDPTSYNEFGPHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEV 82 (266)
Q Consensus 3 ~~~~~~~~~~~~~~~~~v~~~~~~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~ 82 (266)
+++.|.....|.|..+++..++|+|++++++.++ +++++|++||+++++|..+++.+++++|+++|++||+++|+||+
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~--~~~~avivep~~~~~G~~~~~~~~l~~l~~l~~~~g~~lI~DEv 217 (389)
T PRK01278 140 AGGQEKYLEGFGPLVPGFDQVPFGDIEALKAAIT--PNTAAILIEPIQGEGGIRPAPDEFLKGLRQLCDENGLLLIFDEV 217 (389)
T ss_pred ccCChhhcccCCCCCCCceEeCCCCHHHHHHhhC--CCeEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecc
Confidence 4455555566778788899999999999999993 47999999999999998889999999999999999999999999
Q ss_pred ccCcCCcCcccccccCCCCcCeeeecccccCCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHhhccH
Q psy6547 83 QTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENM 162 (266)
Q Consensus 83 ~~~~~~~g~~~~~~~~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~ 162 (266)
|+||+++|..++.+.+++.||++++||++++| +|+||+++++++++.+....+..+++++++.++++.++|+.++.+++
T Consensus 218 ~~g~g~~g~~~~~~~~~~~pdi~t~sK~l~~G-~~ig~~~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~~~~~ 296 (389)
T PRK01278 218 QCGMGRTGKLFAHEWAGVTPDIMAVAKGIGGG-FPLGACLATEEAAKGMTPGTHGSTYGGNPLAMAVGNAVLDVILAPGF 296 (389)
T ss_pred ccCCCcCCcceeecccCCCCCEEEEehhccCC-cceEEEEEcHHHHhccCCCCCCCCCCccHHHHHHHHHHHHHHhhhHH
Confidence 99999988877766778999999999999999 99999999999998888778889999999999999999999887788
Q ss_pred HHHHHHHHHHHHHHhhccccc-C-CCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccCCCCEEEEeccC
Q psy6547 163 IENAYKMGEIFRSELSSPANK-S-KASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPISNNIIRLSPAL 240 (266)
Q Consensus 163 ~~~~~~~~~~l~~~l~~~~~~-~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~iR~~~~~ 240 (266)
.+++++++++++++|++.... + .+.. .++.|. ++++.+.. ++.+++++|+++||.+.|.+.+++||+|++
T Consensus 297 ~~~~~~~~~~l~~~l~~l~~~~~~~~~~-v~g~G~---~~~i~~~~----~~~~~~~~l~~~GV~~~p~~~~~lR~~p~~ 368 (389)
T PRK01278 297 LDNVQRMGLYLKQKLEGLVDRFPDVIEE-VRGKGL---LLGLKCVV----PNRDLVQALRDEGLLTVGAGDNVVRLLPPL 368 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCCceee-EecccE---EEEEEEec----CHHHHHHHHHHCCeEEeecCCCEEEEeCCc
Confidence 999999999999999883222 2 3344 677888 99988754 578899999999999999878999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHH
Q psy6547 241 NITEQELREGLDIIINTINT 260 (266)
Q Consensus 241 ~~t~~~i~~~~~~l~~~~~~ 260 (266)
.++++++++++++|++++++
T Consensus 369 ~~~~~~i~~~l~~l~~~l~~ 388 (389)
T PRK01278 369 IITEEEIDEALERLERAAES 388 (389)
T ss_pred ccCHHHHHHHHHHHHHHHHh
Confidence 99999999999999998865
No 16
>PRK07678 aminotransferase; Validated
Probab=100.00 E-value=4.2e-38 Score=278.69 Aligned_cols=256 Identities=28% Similarity=0.504 Sum_probs=218.0
Q ss_pred CccCCcCcccccCCCCCCceeecCCC-----------------HHHHHHHHhc--CCCEEEEEEccccCCCCcccCChHH
Q psy6547 2 LITTDPTSYNEFGPHMPGYNIIPYND-----------------VDALEAKLKS--NPNICAFMVEPIQGEAGAVVPDDGY 62 (266)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~v~~~~~~d-----------------~~~l~~~l~~--~~~~~~i~~~~~~~~~g~~~~~~~~ 62 (266)
|+++++..+..|.|+.+++..+++++ ++++++++++ .+++++|++||+++.+|.+.+++++
T Consensus 156 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~iAAvi~EPiqg~gG~~~~~~~f 235 (451)
T PRK07678 156 AATGQAQRKYKYEPLAPGFLHVPPPDCYRMPGIESEDIYDLECVKEIDRVMTWELSETIAAVIMEPIITGGGVLMPPQDY 235 (451)
T ss_pred hcCCCcccccccCCCCCCCEEeCCCccccccccCChHHHHHHHHHHHHHHHHhcCCCceEEEEEccccCCCCcccCCHHH
Confidence 55667777777889999998888653 2336777752 3489999999999999999999999
Q ss_pred HHHHHHHHHhcCCEEEEeccccCcCCcCcccccccCCCCcCeeeecccccCCchhhhhheecHHhhhccCC------CCC
Q psy6547 63 LKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVP------GTH 136 (266)
Q Consensus 63 l~~l~~l~~~~g~~li~De~~~~~~~~g~~~~~~~~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~------~~~ 136 (266)
+++++++|++||+++|+||+++||||+|..|.++.+|+.||+++++|+++||++|+|.+++++++++.+.. ..+
T Consensus 236 l~~lr~lc~~~g~llI~DEV~tGfGRtG~~~~~~~~gv~PDivt~gK~lggG~~Pi~av~~~~~i~~~~~~~~~~~~~~h 315 (451)
T PRK07678 236 MKAVKEICQKHGALLISDEVICGFGRTGKAFGFMNYGVKPDIITMAKGITSAYLPLSATAVKKEIYEAFKGKGEYEHFRH 315 (451)
T ss_pred HHHHHHHHHHcCCEEEEeehhhcCCcCchhHHHHhcCCCCCEEEeecccccCCcceeEEEEcHHHHHHHhccCccccccc
Confidence 99999999999999999999999999998888888999999999999999885699999999999987753 258
Q ss_pred CCCCCCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccc-CCCcccEEecCccceeeEEEEeeCc-------
Q psy6547 137 GSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSSPANK-SKASFKLSSGGLKKSINTLILSVSA------- 208 (266)
Q Consensus 137 ~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~------- 208 (266)
.+||++||++++++.++|+.++++++.++++++.+++++.|++.+.. ..+.. +++.|. |+.+++..+.
T Consensus 316 ~~T~~gnp~~~aaa~a~l~~l~~~~~~~~~~~~g~~l~~~l~~~~~~~~~v~~-vrg~Gl---~~~i~~~~~~~~~~~~~ 391 (451)
T PRK07678 316 VNTFGGNPAACALALKNLEIMENENLIERSAQLGELLLEQLKEELGEHPLVGD-IRGKGL---LVGIELVNDKETKEPAD 391 (451)
T ss_pred CCCCCcCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCEEE-EEeece---EEEEEEecCCcccCcCc
Confidence 89999999999999999999999999999999999999999763433 33444 899999 9999985321
Q ss_pred cchHHHHHHHHHHCCceeccCC------CCEEEEeccCCCCHHHHHHHHHHHHHHHHHH
Q psy6547 209 ILEVYDVCIKMKDAGLVTKPIS------NNIIRLSPALNITEQELREGLDIIINTINTM 261 (266)
Q Consensus 209 ~~~~~~~~~~l~~~gi~~~~~~------~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~ 261 (266)
......++..|.++|+++.+.+ .+.+|++|++.+|+++|++++++++++++++
T Consensus 392 ~~~a~~i~~~l~~~Gv~~~~~g~~v~~~~~~lrl~Ppl~it~~eid~~~~~l~~~l~~~ 450 (451)
T PRK07678 392 NDKVASVVAACKEKGLIIGKNGDTVAGYNNVLTLSPPLVISSEEIAFIVGTLKTALERI 450 (451)
T ss_pred hHHHHHHHHHHHHCCcEEeecCccccCCCCEEEEECCCcCCHHHHHHHHHHHHHHHHhc
Confidence 1225678899999999997642 3789999999999999999999999998764
No 17
>PRK08742 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=100.00 E-value=7.9e-38 Score=277.28 Aligned_cols=256 Identities=27% Similarity=0.475 Sum_probs=221.1
Q ss_pred CCccCCcCcccccCCCCCCceeecCCC-----------------HHHHHHHHhcC-CCEEEEEEcc-ccCCCCcccCChH
Q psy6547 1 MLITTDPTSYNEFGPHMPGYNIIPYND-----------------VDALEAKLKSN-PNICAFMVEP-IQGEAGAVVPDDG 61 (266)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~v~~~~~~d-----------------~~~l~~~l~~~-~~~~~i~~~~-~~~~~g~~~~~~~ 61 (266)
+|+++++..++.|.|+.+++.++|+++ ++.+++.++++ +++++|++|| +++.+|.++++++
T Consensus 179 ls~~~~~~~~~~~~p~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~iAAvI~EPviqg~gG~~~~p~~ 258 (472)
T PRK08742 179 LAVGDIPLYRRVYAPLLLESLFAPSPDAYLAEPGQSAEDYALQAADALQALFEQSPGEICALILEPRLQCAGGMRMHHPA 258 (472)
T ss_pred hhccCCcccccccCCCCCCCEEeCCCCccccccCCCHHHHHHHHHHHHHHHHHhCCCceEEEEEccccccCCCcccCCHH
Confidence 356667777788999999999998864 46777888543 4899999999 6999999999999
Q ss_pred HHHHHHHHHHhcCCEEEEeccccCcCCcCcccccccCCCCcCeeeecccccCCchhhhhheecHHhhhccCC------CC
Q psy6547 62 YLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVP------GT 135 (266)
Q Consensus 62 ~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~~~~~~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~------~~ 135 (266)
++++++++|++||+++|+||+++||||+|..|+++.+|+.||+++++|+++||++|+|.+++++++++.+.. ..
T Consensus 259 fl~~lr~lc~~~gillI~DEV~TGfGRtG~~~a~e~~gv~PDiv~~gKgl~gG~~Plaav~~~~ei~~~~~~~~~~~~~~ 338 (472)
T PRK08742 259 YLRRARELCDAHGAFLIADEIATGFGRTGTLFACEQAGVMPDLLCLSKGLTGGFLPLSAVLATQQLYDAFLDDSRERAFL 338 (472)
T ss_pred HHHHHHHHHHHcCCEEEEechhhCCCCCccchHHHhcCCCCCEEEEcccccCCCCCcceeeccHHHHHHhhccCccCccC
Confidence 999999999999999999999999999999999999999999999999999995599999999999877642 24
Q ss_pred CCCCCCCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccc-CCCcccEEecCccceeeEEEEeeCcc-----
Q psy6547 136 HGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSSPANK-SKASFKLSSGGLKKSINTLILSVSAI----- 209 (266)
Q Consensus 136 ~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~----- 209 (266)
+.+||++||++++++.++|+.++++++.++.++..+++++.++. +.. +.+.. +++.|+ ++.+++..+..
T Consensus 339 h~~T~~gnpl~~Aaa~a~L~~i~~~~l~~~~~~~g~~l~~~~~~-~~~~~~i~d-vRG~Gl---~~giel~~~~~~~~~~ 413 (472)
T PRK08742 339 HSHSYTGNPLACAAALATLDIFADDDVIARNQPTAARMTQLAAQ-IGEHPHVAD-VRQAGM---VVAFELTRGGNKRTPF 413 (472)
T ss_pred cCCCCCccHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH-HhcCCCeee-Eeccce---EEEEEeccCccccccC
Confidence 78999999999999999999999999999999999999988877 543 44555 999999 99999864211
Q ss_pred ----chHHHHHHHHHHCCceeccCCCCEEEEeccCCCCHHHHHHHHHHHHHHHHHHh
Q psy6547 210 ----LEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINTMA 262 (266)
Q Consensus 210 ----~~~~~~~~~l~~~gi~~~~~~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~~ 262 (266)
.....+.++++++|+++.+. ++.+||.|++..|++++++++++|++++++..
T Consensus 414 ~~~~~~~~~~~~~~~~~Gll~~~~-g~vi~~~PpL~it~~ei~~~~~~l~~~l~~~~ 469 (472)
T PRK08742 414 PPAARVGLHAYRAALARGVVLRPL-GDVLYWMPPYCVDEAQLALLADTTRHAIDEAV 469 (472)
T ss_pred CchhHHHHHHHHHHHHCCeEEEec-CCEEEEECCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 01356788899999999987 47999999999999999999999999998754
No 18
>PRK06938 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional
Probab=100.00 E-value=5.9e-38 Score=278.04 Aligned_cols=255 Identities=25% Similarity=0.416 Sum_probs=219.3
Q ss_pred CccCCcCcccccCCCCCCceeecCCC-----------------HHHHHHHHhcC----CCEEEEEEccccCCCCcccCCh
Q psy6547 2 LITTDPTSYNEFGPHMPGYNIIPYND-----------------VDALEAKLKSN----PNICAFMVEPIQGEAGAVVPDD 60 (266)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~v~~~~~~d-----------------~~~l~~~l~~~----~~~~~i~~~~~~~~~g~~~~~~ 60 (266)
|+++++..++.|.|+.+++..+++++ ++++++++++. +++++|++||+++.+|.+++++
T Consensus 172 s~t~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~iAAvI~EPiqg~gG~~~p~~ 251 (464)
T PRK06938 172 SLMGNLGPKKPLGALLPGVQFLPYPYDYRCPFGLGGEAGVRANLHYLENLLDDPESGVVLPAAVILEVVQGEGGVIPAPI 251 (464)
T ss_pred hhcCCccccccCCCCCCCcEEeCCCccccccccCchhhHHHHHHHHHHHHHHhhccCCCceEEEEEccccCCCCCcCCCH
Confidence 45566666677888888888887652 57788888642 2699999999999999999999
Q ss_pred HHHHHHHHHHHhcCCEEEEeccccCcCCcCcccccccCCCCcCeeeecccccCCchhhhhheecHHhhhccCCCCCCCCC
Q psy6547 61 GYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTY 140 (266)
Q Consensus 61 ~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~~~~~~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~ 140 (266)
+++++++++|++||+++|+||+++||||+|..|+++.+++.||+++++|+++|| +|+|.+++++++ +.+....+.+||
T Consensus 252 ~yl~~lr~lc~~~giLlI~DEV~tGfGRtG~~~a~e~~gv~PDiv~~gKglggG-~PlsAv~~~~~~-~~~~~~~~~~T~ 329 (464)
T PRK06938 252 EWLRGLRRITEEAGIPLIVDEIQSGFGRTGKMFAFEHAGIIPDVVVLSKAIGGS-LPLAVVVYREWL-DTWQPGAHAGTF 329 (464)
T ss_pred HHHHHHHHHHHHcCCEEEEeccccCCCcCcHHHHHHhcCCCCCEEEeeccccCC-CceEEEeehhHh-hccCCCCCCCCC
Confidence 999999999999999999999999999999999999999999999999999999 999999998875 666666789999
Q ss_pred CCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccc-CCCcccEEecCccceeeEEEEeeCcc----------
Q psy6547 141 GGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSSPANK-SKASFKLSSGGLKKSINTLILSVSAI---------- 209 (266)
Q Consensus 141 ~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~---------- 209 (266)
++||++++++.++|+.++++++.+++++++++++++|+++... +.+.. +++.|+ |+.+++.....
T Consensus 330 ~gnpla~Aaa~a~L~~l~~~~l~~~~~~~G~~l~~~L~~l~~~~~~i~~-VrG~Gl---m~gie~~~~~~~~~~~~~~~~ 405 (464)
T PRK06938 330 RGNQMAMAAGSATLRYIKEHRLAEHAAAMGERLREHLRQLQRDYPQLGD-VRGRGL---MLGVEIVDPQGEPDALGHPPA 405 (464)
T ss_pred CcCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCeee-eeccce---EEEEEeccCcccccccccCCc
Confidence 9999999999999999999999999999999999999983333 44455 999999 99999854211
Q ss_pred --chHHHHHHHHHHCCceeccCC--CCEEEEeccCCCCHHHHHHHHHHHHHHHHHHh
Q psy6547 210 --LEVYDVCIKMKDAGLVTKPIS--NNIIRLSPALNITEQELREGLDIIINTINTMA 262 (266)
Q Consensus 210 --~~~~~~~~~l~~~gi~~~~~~--~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~~ 262 (266)
.....+++.|.++|+++.+.+ ++.+|+.|++.+|+++++++++++++++.+..
T Consensus 406 ~~~~~~~~~~~~~~~Gll~~~~g~~~~~l~~~Ppl~it~~eid~~~~~l~~~l~~~~ 462 (464)
T PRK06938 406 NGELASLIQRECLRRGLILELGGRHGSVVRFLPPLIITAEQIDEVAEIFAEAVAAAV 462 (464)
T ss_pred cHHHHHHHHHHHHHCCeEEeecCCCCCEEEEECCCccCHHHHHHHHHHHHHHHHHHh
Confidence 124568889999999998753 58999999999999999999999999998754
No 19
>PRK07030 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=100.00 E-value=7.3e-38 Score=277.58 Aligned_cols=254 Identities=27% Similarity=0.464 Sum_probs=221.7
Q ss_pred CccCCcCcccccCCCCCCceeecCCC-----------------HHHHHHHHhcC-CCEEEEEEcc-ccCCCCcccCChHH
Q psy6547 2 LITTDPTSYNEFGPHMPGYNIIPYND-----------------VDALEAKLKSN-PNICAFMVEP-IQGEAGAVVPDDGY 62 (266)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~v~~~~~~d-----------------~~~l~~~l~~~-~~~~~i~~~~-~~~~~g~~~~~~~~ 62 (266)
|+++++..+..|.|+.++++.+|+++ ++++++.++++ +++++|++|| +++.+|.+.+++++
T Consensus 158 s~~~~~~~~~~~~p~~~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~le~~~~~~~~~iAAvi~EP~iqg~gG~~~~~~~y 237 (466)
T PRK07030 158 SVGDVALFTETYKPLLLDTIKVPSPDCYLRPEGMSWEEHSRRMFAHMEQTLAEHHDEIAAVIVEPLIQGAGGMRMYHPVY 237 (466)
T ss_pred hccCCccccccCCccCCCCEEcCCCCccccccCCCHHHHHHHHHHHHHHHHHhCCCceEEEEEecccccCCCcccCCHHH
Confidence 55677777788899888898888765 46678888653 4899999999 69999999999999
Q ss_pred HHHHHHHHHhcCCEEEEeccccCcCCcCcccccccCCCCcCeeeecccccCCchhhhhheecHHhhhccC-------CCC
Q psy6547 63 LKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLV-------PGT 135 (266)
Q Consensus 63 l~~l~~l~~~~g~~li~De~~~~~~~~g~~~~~~~~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~-------~~~ 135 (266)
+++|+++|++||+++|+||+++||||+|..|+++.+++.||+++++|+++||++|+|.+++++++++.+. ...
T Consensus 238 l~~lr~lc~~~g~llI~DEV~TGfGRtG~~~a~~~~gv~PDiv~~gKgl~gG~~Pi~av~~~~ei~~~~~~~~~~~~~~~ 317 (466)
T PRK07030 238 LKLLREACDRYGVHLIHDEIAVGFGRTGTMFACEQAGIRPDFLCLSKALTGGYLPLAAVLTTDTVYQAFYDDYPTLRAFL 317 (466)
T ss_pred HHHHHHHHHHcCCEEEEeehhhCcCccccchHHHhcCCCCCEEeeehhccCCcccceEEEecHHHHHHHhcccccccccc
Confidence 9999999999999999999999999999999999999999999999999999559999999999987764 235
Q ss_pred CCCCCCCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccc-CCCcccEEecCccceeeEEEEeeCcc-----
Q psy6547 136 HGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSSPANK-SKASFKLSSGGLKKSINTLILSVSAI----- 209 (266)
Q Consensus 136 ~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~----- 209 (266)
+.+||++||++++++.++|+.++++++.++.+++.+++++.|++ +.. +.+.. +++.|+ ++.+++.....
T Consensus 318 h~~T~~gnpla~aaa~a~L~~i~~~~l~~~~~~~G~~l~~~L~~-l~~~~~v~~-vrG~Gl---~~gie~~~~~~~~~~~ 392 (466)
T PRK07030 318 HSHSYTGNPLACAAALATLDIFEQDNVIENNRALARRMAEATAH-LADHPHVAE-VRQTGM---ILAIEMVQDKASKTPY 392 (466)
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH-HhcCCCEEE-eEecee---EEEEEeccCccccccC
Confidence 88999999999999999999999999999999999999999998 543 44555 899999 99999854211
Q ss_pred ----chHHHHHHHHHHCCceeccCCCCEEEEeccCCCCHHHHHHHHHHHHHHHHHH
Q psy6547 210 ----LEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINTM 261 (266)
Q Consensus 210 ----~~~~~~~~~l~~~gi~~~~~~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~ 261 (266)
.....+.+++.++|+++.+. ++.+|+.|++.+|++++++++++++++++++
T Consensus 393 ~~~~~~~~~i~~~~~~~Gvl~~~~-g~~i~~~Ppl~it~~eid~~~~~l~~al~~~ 447 (466)
T PRK07030 393 PWQERRGLKVYQHALERGALLRPL-GSVVYFLPPYVITPEQIDFLAEVASEGIDIA 447 (466)
T ss_pred cchhHHHHHHHHHHHHCCeEEEec-CCEEEEECCccCCHHHHHHHHHHHHHHHHHH
Confidence 01356888999999999887 4799999999999999999999999999886
No 20
>PLN02760 4-aminobutyrate:pyruvate transaminase
Probab=100.00 E-value=9.4e-38 Score=278.62 Aligned_cols=254 Identities=28% Similarity=0.432 Sum_probs=217.2
Q ss_pred CccCCcCcccccCCCCCCceeecCCC------------------HHHHHHHHhc-C-CCEEEEEEccccCCCCcccCChH
Q psy6547 2 LITTDPTSYNEFGPHMPGYNIIPYND------------------VDALEAKLKS-N-PNICAFMVEPIQGEAGAVVPDDG 61 (266)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~v~~~~~~d------------------~~~l~~~l~~-~-~~~~~i~~~~~~~~~g~~~~~~~ 61 (266)
++++.+...+.|.+..+.+.++++++ .++|++++.+ + +++++|++||+++++|.+.++++
T Consensus 202 slsg~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~iAAvI~EPv~g~gG~~~p~~~ 281 (504)
T PLN02760 202 SLSGLPALHQKFDLPAPFVLHTDCPHYWRFHLPGETEEEFSTRLADNLENLILKEGPETIAAFIAEPVMGAGGVIPPPAT 281 (504)
T ss_pred hccCChhhccCCCCCCCCcEEeCCCcccccCCCCCcHHHHHHHHHHHHHHHHHhcCCCceEEEEECCccCCCCCcCCCHH
Confidence 45666666677777777777776543 2457777742 2 37999999999999999999999
Q ss_pred HHHHHHHHHHhcCCEEEEeccccCcCCcCcccccccCCCCcCeeeecccccCCchhhhhheecHHhhhccCC-------C
Q psy6547 62 YLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVP-------G 134 (266)
Q Consensus 62 ~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~~~~~~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~-------~ 134 (266)
++++|+++|++||+++|+||+++||||+|..|+++.+++.||+++++|++++|++|+|.+++++++++.+.. .
T Consensus 282 yl~~lr~lc~~~g~lLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlgK~lggG~~PigAv~~~~~i~d~~~~~~~~~~~~ 361 (504)
T PLN02760 282 YFEKIQAVLKKYDILFIADEVICAFGRLGTMFGCDKYNIKPDLVSLAKALSSAYMPIGAVLVSPEISDVIHSQSNKLGSF 361 (504)
T ss_pred HHHHHHHHHHHcCCEEEecchhhCCcccchhhHHHhcCCCCcEEEecccccCCccccceEeecHHHHhhhhcccccccCc
Confidence 999999999999999999999999999999999999999999999999999985699999999999987753 2
Q ss_pred CCCCCCCCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccc-CCCcccEEecCccceeeEEEEeeCcc----
Q psy6547 135 THGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSSPANK-SKASFKLSSGGLKKSINTLILSVSAI---- 209 (266)
Q Consensus 135 ~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~---- 209 (266)
.+.+||+++|+++++++++|+.++++++.++++++.+++++.|++ +.. ..+.. +++.|+ ++.+++.+...
T Consensus 362 ~h~~T~~gnPl~~Aaala~Le~i~~~~l~~~~~~~g~~l~~~L~~-l~~~~~v~~-vrG~Gl---~~gie~~~~~~~~~~ 436 (504)
T PLN02760 362 AHGFTYSGHPVSCAVALEALKIYKERNIPEHVNKIAPRFQDGIKA-FSGSPIIGE-IRGTGL---ILGTEFVDNKSPNDP 436 (504)
T ss_pred ccCCCCCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH-HhcCCCeee-EEeCce---EEEEEEecCCccccc
Confidence 578999999999999999999999999999999999999999998 544 33444 899999 99999865211
Q ss_pred -----chHHHHHHHHHHCCceeccCCCCEEEEeccCCCCHHHHHHHHHHHHHHHHHH
Q psy6547 210 -----LEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINTM 261 (266)
Q Consensus 210 -----~~~~~~~~~l~~~gi~~~~~~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~ 261 (266)
.-...+++.|+++||++.+. ++.+|++|++.+|+++|++++++++++++++
T Consensus 437 ~~~~~~~~~~i~~~~~~~Gvl~~~~-g~~lrl~Ppl~it~eeid~~~~~l~~al~~~ 492 (504)
T PLN02760 437 FPAEWGVGAYFGAECKKRGMLVRVA-GDNIMMSPPLIITPEEVDELISIYGKALKAT 492 (504)
T ss_pred ccchhHHHHHHHHHHHhCCcEEEec-CCEEEEECCCCCCHHHHHHHHHHHHHHHHHH
Confidence 01556888999999999886 4689999999999999999999999998776
No 21
>PRK03244 argD acetylornithine aminotransferase; Provisional
Probab=100.00 E-value=1.4e-37 Score=272.94 Aligned_cols=244 Identities=37% Similarity=0.643 Sum_probs=216.9
Q ss_pred cCcccccCCCCCCceeecCCCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCc
Q psy6547 7 PTSYNEFGPHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGL 86 (266)
Q Consensus 7 ~~~~~~~~~~~~~v~~~~~~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~ 86 (266)
+.....|.++..+++.+|++|++++++.+ .+++++|++||++|++|.+.++.+++++|+++|++||+++|+||+|+||
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~d~~~l~~~~--~~~~~aviiep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~ 229 (398)
T PRK03244 152 PAKRAPFEPLPGGVEHVPYGDVDALAAAV--DDDTAAVFLEPIQGEAGVVPPPAGYLAAAREITDRHGALLVLDEVQTGI 229 (398)
T ss_pred cccccCCCCCCCCceEeCCCCHHHHHHhh--cCCeEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCC
Confidence 34456677888899999999999999999 3479999999999999999888899999999999999999999999999
Q ss_pred CCcCcccccccCCCCcCeeeecccccCCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHhhccHHHHH
Q psy6547 87 GRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENA 166 (266)
Q Consensus 87 ~~~g~~~~~~~~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~ 166 (266)
+++|..+.+...++.||++++||++++| +|+|++++++++++.+....+..+|+.++++++++.++|+.++.+++.+++
T Consensus 230 gr~g~~~~~~~~~~~pDi~t~sK~l~~G-~~ig~~~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~~~~~~~~ 308 (398)
T PRK03244 230 GRTGAWFAHQHDGVTPDVVTLAKGLGGG-LPIGACLAFGPAADLLTPGLHGSTFGGNPVACAAALAVLDTIASEGLLENA 308 (398)
T ss_pred cccchHHhhhhhCCCCCEEEEchhhhCC-cccEEEEEcHHHHhhccCCCCcCCCCCCHHHHHHHHHHHHHHHhccHHHHH
Confidence 9999876667788999999999999999 999999999999888887678889999999999999999998888899999
Q ss_pred HHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccCCCCEEEEeccCCCCHHH
Q psy6547 167 YKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQE 246 (266)
Q Consensus 167 ~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~iR~~~~~~~t~~~ 246 (266)
+++++++++.|++ ++.+.+.. .++.|. ++++.++. ..+.+++++|.++||++.+...+.+|++|+..++++|
T Consensus 309 ~~~~~~l~~~L~~-~~~~~~~~-v~g~g~---~~~i~~~~---~~~~~~~~~l~~~Gv~~~~~~~~~iR~~p~~~~t~~~ 380 (398)
T PRK03244 309 ERLGEQLRAGIEA-LGHPLVDH-VRGRGL---LLGIVLTA---PVAKAVEAAAREAGFLVNAVAPDVIRLAPPLIITDAQ 380 (398)
T ss_pred HHHHHHHHHHHHh-cCCCceee-EeeccE---EEEEEEec---cHHHHHHHHHHHCCeEEeecCCCEEEEECCCcCCHHH
Confidence 9999999999998 55433333 677888 99999865 2567899999999999998767999999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q psy6547 247 LREGLDIIINTINTM 261 (266)
Q Consensus 247 i~~~~~~l~~~~~~~ 261 (266)
+++++++|++++.+.
T Consensus 381 i~~~~~~l~~~l~~~ 395 (398)
T PRK03244 381 VDAFVAALPAILDAA 395 (398)
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999999764
No 22
>PLN02624 ornithine-delta-aminotransferase
Probab=100.00 E-value=1.5e-37 Score=276.78 Aligned_cols=256 Identities=48% Similarity=0.833 Sum_probs=223.9
Q ss_pred CCccCCcCcccccCCCCCCceeecCCCHHHHHHHHhcC-CCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEE
Q psy6547 1 MLITTDPTSYNEFGPHMPGYNIIPYNDVDALEAKLKSN-PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIA 79 (266)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~v~~~~~~d~~~l~~~l~~~-~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~ 79 (266)
+|.++++...+.|.|..+++..++|+|+++++++++.+ +++++|++||+++++|.+.++.+++++|+++|++||+++|+
T Consensus 184 ~s~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~iaaiiiEpv~~~~G~v~p~~~~L~~l~~lc~~~gillI~ 263 (474)
T PLN02624 184 ISMSCDNEATRGFGPLLPGHLKVDFGDLDALEKIFEEDGDRIAAFLFEPIQGEAGVVIPPDGYLKAVRELCSKHNVLMIA 263 (474)
T ss_pred hhcCCCccccccCCCCCCCceEeCCCCHHHHHHHHHhCCCCEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEE
Confidence 35667787888899999999999999999999999654 47999999999999999988888999999999999999999
Q ss_pred eccccCcCCcCcccccccCCCCcCeeeecccccCCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHhh
Q psy6547 80 DEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILE 159 (266)
Q Consensus 80 De~~~~~~~~g~~~~~~~~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~ 159 (266)
||+|+||+++|..++.+.+++.||++++||++++|++|+|+++.++++++.+....+..|++++++.++++.++|+.++.
T Consensus 264 DEv~tG~GrtG~~~a~~~~~i~pDiv~lsK~lggG~~pigav~~~~~i~~~~~~~~~~~T~~g~pl~~aaa~aaLe~l~~ 343 (474)
T PLN02624 264 DEIQTGLARTGKMLACDWEEVRPDVVILGKALGGGVIPVSAVLADKDVMLCIKPGEHGSTFGGNPLASAVAMAALQVVQD 343 (474)
T ss_pred eccccCcCcCcchhhHHhcCCCCCEEEecccccCCCCcceeeeecHHHHhHhccCCcCCCCCCCHHHHHHHHHHHHHHHh
Confidence 99999999999877777788999999999999977689999999999888887777888999999999999999999988
Q ss_pred ccHHHHHHHHHHHHHHHhhccccc--C-CCcccEEecCccceeeEEEEeeCc--cchHHHHHHHHHHCCceeccCCCCEE
Q psy6547 160 ENMIENAYKMGEIFRSELSSPANK--S-KASFKLSSGGLKKSINTLILSVSA--ILEVYDVCIKMKDAGLVTKPISNNII 234 (266)
Q Consensus 160 ~~~~~~~~~~~~~l~~~l~~~~~~--~-~~~~~~~~~g~~~~~~~~~~~~~~--~~~~~~~~~~l~~~gi~~~~~~~~~i 234 (266)
+++.+++.++.+.++++|++ +.. + .+.. +++.|. ++.+.+.... ...+.+++++|.++||++.|.+.+++
T Consensus 344 ~~l~~~~~~~~~~l~~~L~~-l~~~~~~~i~~-vrg~G~---~~~i~l~~~~~~~~~a~~~~~~L~e~GV~v~p~~~~~l 418 (474)
T PLN02624 344 EKLAERSAKLGQELRDQLQK-IQKQFPKLIKE-VRGRGL---LNAVVLNSPKLGPVSAYDVCLKLKERGLLAKPTHDTII 418 (474)
T ss_pred chHHHHHHHHHHHHHHHHHH-HHHhCCCceEE-EEeeEE---EEEEEecCCCcChHHHHHHHHHHHhCCeEEecCCCCEE
Confidence 88999999999999999988 542 2 2444 678888 8888775421 13467899999999999999888999
Q ss_pred EEeccCCCCHHHHHHHHHHHHHHHHHH
Q psy6547 235 RLSPALNITEQELREGLDIIINTINTM 261 (266)
Q Consensus 235 R~~~~~~~t~~~i~~~~~~l~~~~~~~ 261 (266)
||+|++.+|++++++++++|++++..-
T Consensus 419 R~~p~l~~t~e~id~~l~~L~~~l~~~ 445 (474)
T PLN02624 419 RLAPPLSISEDELQECSKALSDVLEHD 445 (474)
T ss_pred EEECCccCCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999987664
No 23
>PRK03715 argD acetylornithine transaminase protein; Provisional
Probab=100.00 E-value=1.1e-37 Score=272.07 Aligned_cols=249 Identities=31% Similarity=0.564 Sum_probs=216.8
Q ss_pred CccCCcCcccccCCCCCCceeecCCCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEec
Q psy6547 2 LITTDPTSYNEFGPHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADE 81 (266)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~v~~~~~~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De 81 (266)
++++++..+..|.|..+++..++++|++++++.++ +++++|++||+++++|.+.++++++++|+++|++||+++|+||
T Consensus 143 ~~s~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~--~~~aavi~Epv~~~gG~~~~~~~~l~~l~~l~~~~~~llI~DE 220 (395)
T PRK03715 143 SASGKPGWDTIFAPQVPGFPKAELNDIASVEKLIT--DKTVAVMLEPVQGEGGVIPATREFMQQLRALTKQHGLLLIVDE 220 (395)
T ss_pred hhcCCcccccCCCCCCCCceeeCCchHHHHHHHcC--CCceEEEEeCCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEec
Confidence 45566667777888888899999999999999993 4799999999999999998899999999999999999999999
Q ss_pred cccCcCCcCcccccccCCCCcCeeeecccccCCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHhhcc
Q psy6547 82 VQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEEN 161 (266)
Q Consensus 82 ~~~~~~~~g~~~~~~~~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~ 161 (266)
+|+|||++|..|+++.+++.||++++||++++| +|+|.+++++++. .+....+.+||+++|++++++.++|+.+++++
T Consensus 221 v~tG~GRtG~~~a~~~~gv~PDi~t~gK~lg~G-~p~~av~~~~~i~-~~~~~~~~~T~~g~pl~~aaala~L~~l~~~~ 298 (395)
T PRK03715 221 VQTGCGRTGTLFAYELSGIEPDIMTLGKGIGGG-VPLAALLAKAEVA-VFEAGDQGGTYNGNPLMTAVGVAVISQLLAPG 298 (395)
T ss_pred cccCCCCCcchhhHhhcCCCCceeeehhhhhCC-cceEEEEEccccc-cccCCCcCCCCCCCHHHHHHHHHHHHHHHhcc
Confidence 999999999998888899999999999999999 9999999998886 33444578899999999999999999999889
Q ss_pred HHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHC---CceeccCCCCEEEEec
Q psy6547 162 MIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDA---GLVTKPISNNIIRLSP 238 (266)
Q Consensus 162 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~---gi~~~~~~~~~iR~~~ 238 (266)
+.++++++.++++++|+++.....+.. +++.|. |+.+++.+. ....+.+.+.+. |+++.+...+.+|++|
T Consensus 299 l~~~~~~~g~~l~~~L~~l~~~~~i~~-vrG~Gl---m~~i~l~~~---~~~~~~~~~~~~~~~Gi~~~~~~~~~lR~~p 371 (395)
T PRK03715 299 FLEGVRARGEYLKEKLLELSEERGLEG-ERGEGL---LRALLLGKD---IGPQIVEKARDMQPDGLLLNAPRPNLLRFMP 371 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCCcCe-EEccee---EEEEEecCc---hHHHHHHHHHhccCCCEEEeecCCCEEEEeC
Confidence 999999999999999998322334555 889999 999999761 234555555555 9999876678999999
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHH
Q psy6547 239 ALNITEQELREGLDIIINTINTM 261 (266)
Q Consensus 239 ~~~~t~~~i~~~~~~l~~~~~~~ 261 (266)
++.+|++++++++++|+++++++
T Consensus 372 ~l~~t~~ei~~~~~~l~~~l~~~ 394 (395)
T PRK03715 372 ALNVTTEEIDQMIAMLRSVLDKL 394 (395)
T ss_pred CcccCHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999998764
No 24
>PRK07481 hypothetical protein; Provisional
Probab=100.00 E-value=3.4e-37 Score=272.72 Aligned_cols=257 Identities=28% Similarity=0.487 Sum_probs=217.1
Q ss_pred CCccCCcCcccccCCCCCCceeecCC----------CHHHH--------HHHHh-c-CCCEEEEEEccccCCCCcccCCh
Q psy6547 1 MLITTDPTSYNEFGPHMPGYNIIPYN----------DVDAL--------EAKLK-S-NPNICAFMVEPIQGEAGAVVPDD 60 (266)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~v~~~~~~----------d~~~l--------~~~l~-~-~~~~~~i~~~~~~~~~g~~~~~~ 60 (266)
+|+++++.....|.|..+++..++++ |++++ |++++ + .+++++|++||+++.+|.+++++
T Consensus 154 ~s~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~i~~~~~~~iAAviiEPvqg~gG~~~~~~ 233 (449)
T PRK07481 154 ASVNGNTVFRRNYEPLLPGCFHVETPWLYRNPFTEQDPEELARICARLLEREIAFQGPDTIAAFIAEPVQGAGGVIVPPA 233 (449)
T ss_pred hccCCCcccccccCCCCCCCEEeCCCcccccccCCCCHHHHHHHHHHHHHHHHHhcCCCcEEEEEEecccCCcCCccCCH
Confidence 35667777777788988888887643 44443 44443 2 24799999999999999999999
Q ss_pred HHHHHHHHHHHhcCCEEEEeccccCcCCcCcccccccCCCCcCeeeecccccCCchhhhhheecHHhhhccCC-------
Q psy6547 61 GYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVP------- 133 (266)
Q Consensus 61 ~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~~~~~~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~------- 133 (266)
+++++++++|++||+++|+||+++||||+|..|+++.+++.||+++++|++++|++|+|.+++++++++.+..
T Consensus 234 ~fl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~a~~~~gv~PDiv~~gKgl~gG~~Pi~av~~~~~i~~~~~~~~~~~~~ 313 (449)
T PRK07481 234 NFWPLVREVCDRHGILLIADEVVTGFGRTGSWFGSRGWGVKPDIMCLAKGITSGYVPLGATMVNARIADAFEANADFGGA 313 (449)
T ss_pred HHHHHHHHHHHHcCCEEEEeehhhCcCcCchhhHhhhcCCCCCEEEEeecccCCCcCceEEEEcHHHHHHHhccCccccc
Confidence 9999999999999999999999999999999888889999999999999999995599999999999887753
Q ss_pred CCCCCCCCCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccc-CCCcccEEecCccceeeEEEEeeCc----
Q psy6547 134 GTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSSPANK-SKASFKLSSGGLKKSINTLILSVSA---- 208 (266)
Q Consensus 134 ~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~---- 208 (266)
..+.+||++||++++++.++|+.++++++.+++++..+++++.|+++... +.+.. +++.|+ |+.+++..+.
T Consensus 314 ~~h~~T~~gnpl~~aaa~a~L~~l~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~-vrG~Gl---m~gi~l~~~~~~~~ 389 (449)
T PRK07481 314 IMHGYTYSGHPVACAAALATLDIVVREDLPANAAKRGAYLLEGLQPLKERFELVGD-VRGKGL---MLALDLVADKATRE 389 (449)
T ss_pred cccCCCCCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhcCCCeEE-Eeecce---EEEEEecccccccC
Confidence 25788999999999999999999999999999999999999999983332 33444 899999 9999985321
Q ss_pred c-----chHHHHHHHHHHCCceeccCCCCEEEEeccCCCCHHHHHHHHHHHHHHHHHHh
Q psy6547 209 I-----LEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINTMA 262 (266)
Q Consensus 209 ~-----~~~~~~~~~l~~~gi~~~~~~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~~ 262 (266)
. .....+.++|+++|+++.+.+ +.+|++|++.+|++++|+++++++++++++.
T Consensus 390 ~~~~~~~~~~~~~~~~~~~Gvl~~~~g-~~i~l~Ppl~it~~eid~~~~~l~~~l~~~~ 447 (449)
T PRK07481 390 PIDPSKGYANAVADVARENGVLVRPSG-TKIILSPPLVIQREDVDRIVDALDAGLSAVP 447 (449)
T ss_pred CCCchhHHHHHHHHHHHhCCeEEEecC-CEEEEECCCCCCHHHHHHHHHHHHHHHHhcc
Confidence 0 124568888999999998874 5699999999999999999999999998754
No 25
>PRK07986 adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated
Probab=100.00 E-value=3.4e-37 Score=270.57 Aligned_cols=247 Identities=29% Similarity=0.473 Sum_probs=215.1
Q ss_pred CcccccCCCCCCceeecC-----------CCHHHHHHHHhcC-CCEEEEEEccc-cCCCCcccCChHHHHHHHHHHHhcC
Q psy6547 8 TSYNEFGPHMPGYNIIPY-----------NDVDALEAKLKSN-PNICAFMVEPI-QGEAGAVVPDDGYLKKVRALCSQYN 74 (266)
Q Consensus 8 ~~~~~~~~~~~~v~~~~~-----------~d~~~l~~~l~~~-~~~~~i~~~~~-~~~~g~~~~~~~~l~~l~~l~~~~g 74 (266)
..++.|.|+.++++++++ +|++++++.+++. +++++|++||+ ++.+|++.++++++++|+++|++||
T Consensus 160 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~d~~~l~~~l~~~~~~iaavi~Epi~~g~gg~~~~~~~~L~~l~~lc~~~g 239 (428)
T PRK07986 160 SMHSLYKGYLPENLFAPAPQSRFDGEWDERDIAPFARLMAAHRHEIAAVILEPIVQGAGGMRIYHPEWLKRVRKLCDREG 239 (428)
T ss_pred hhhhccCCCCCCCEEECCCCcccchhhHHHHHHHHHHHHHhCCCcEEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcC
Confidence 345667888888777653 4678889989653 37999999996 8888888889999999999999999
Q ss_pred CEEEEeccccCcCCcCcccccccCCCCcCeeeecccccCCchhhhhheecHHhhhccCCC-----CCCCCCCCcHHHHHH
Q psy6547 75 VLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPG-----THGSTYGGNPLACKL 149 (266)
Q Consensus 75 ~~li~De~~~~~~~~g~~~~~~~~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~a 149 (266)
+++|+||+++|||++|..|+.+.+++.||++++||+++||++|+|.+++++++++.+... .+.+||+++|+++++
T Consensus 240 ~lLI~DEv~tG~GrtG~~fa~~~~gv~PDi~t~gK~l~gG~~p~~av~~~~~i~~~~~~~~~~~~~~~~T~~g~p~~~aa 319 (428)
T PRK07986 240 ILLIADEIATGFGRTGKLFACEHAGIAPDILCLGKALTGGTMTLSATLTTREVAETISNGEAGCFMHGPTFMGNPLACAV 319 (428)
T ss_pred CEEEEeccccCCccCCCeeeecccCCCCCEEEechhhhCCcccCcchhchHHHHHHhhcCCCCccccCCCCCcCHHHHHH
Confidence 999999999999999999899999999999999999999966999999999999888642 378899999999999
Q ss_pred HHHHHHHHhhccHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccC
Q psy6547 150 AMTALDVILEENMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPI 229 (266)
Q Consensus 150 ~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~ 229 (266)
+.++|+.++++++.++++++.+++++.|++....+.+.. +++.|. ++.+.+.. ...+..+.+.|+++|+++.+.
T Consensus 320 a~a~L~~i~~~~~~~~~~~~g~~l~~~l~~l~~~~~i~~-vRg~Gl---~~~ve~~~--~~~~~~~~~~l~~~Gl~~~~~ 393 (428)
T PRK07986 320 ANASLSLLESGDWQQQVAAIEAQLREELAPLRDAPMVAD-VRVLGA---IGVVETTR--PVNMAALQRFFVEQGVWIRPF 393 (428)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhcCCCEEe-Eeccce---EEEEEeCC--cccHHHHHHHHHHCCcEEEec
Confidence 999999999999999999999999999998323344555 899999 99999876 334678999999999999887
Q ss_pred CCCEEEEeccCCCCHHHHHHHHHHHHHHHHHH
Q psy6547 230 SNNIIRLSPALNITEQELREGLDIIINTINTM 261 (266)
Q Consensus 230 ~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~ 261 (266)
+ +.+|++|++.+|++++++++++|++++++.
T Consensus 394 g-~~i~~~Ppl~it~~ei~~~~~~l~~~l~~~ 424 (428)
T PRK07986 394 G-KLIYLMPPYIILPEQLQRLTAAVNRAVQDE 424 (428)
T ss_pred C-CEEEEeCCCCCCHHHHHHHHHHHHHHHhhc
Confidence 4 799999999999999999999999998653
No 26
>PRK05093 argD bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein; Reviewed
Probab=100.00 E-value=4.3e-37 Score=270.10 Aligned_cols=251 Identities=35% Similarity=0.579 Sum_probs=216.9
Q ss_pred cCCcCcccccCCCCCCceeecCCCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccc
Q psy6547 4 TTDPTSYNEFGPHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQ 83 (266)
Q Consensus 4 ~~~~~~~~~~~~~~~~v~~~~~~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~ 83 (266)
++++.....+.|...++++++|||++++++.+ .+++++|++||+++++|.+.++.+++++|+++|++||+++|+||+|
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l--~~~~aaiiiep~~~~gg~~~~~~~~l~~l~~l~~~~g~~lI~DEv~ 227 (403)
T PRK05093 150 GGQPKYSDGFGPKPADITHVPFNDLAAVKAVI--DDHTCAVVVEPIQGEGGVIPATPEFLQGLRELCDQHNALLIFDEVQ 227 (403)
T ss_pred cCChhhhhcCCCCCCCcEEeCCCCHHHHHHHh--cCCeEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechh
Confidence 44454455677888899999999999999999 3479999999999999988789999999999999999999999999
Q ss_pred cCcCCcCcccccccCCCCcCeeeecccccCCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHhhccHH
Q psy6547 84 TGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMI 163 (266)
Q Consensus 84 ~~~~~~g~~~~~~~~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~ 163 (266)
+++++.|..++...+++.||+.+|||++++| +|+||+++++++++.+....+..+++++++.++++.++|+.+..+++.
T Consensus 228 ~g~g~~g~~~~~~~~~~~pdi~s~sK~l~~G-~rig~vv~~~~i~~~l~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~ 306 (403)
T PRK05093 228 TGMGRTGDLFAYMHYGVTPDILTSAKALGGG-FPIGAMLTTAEIASHFKVGTHGSTYGGNPLACAVAEAVFDIINTPEVL 306 (403)
T ss_pred hCCCCCccchhhhhcCCCCCEEEecccccCC-cceEEEEEcHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHhhccHH
Confidence 9998888766666778899999999999999 999999999999998887677788999999999999999998878899
Q ss_pred HHHHHHHHHHHHHhhccccc-CCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccCCCCEEEEeccCCC
Q psy6547 164 ENAYKMGEIFRSELSSPANK-SKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNI 242 (266)
Q Consensus 164 ~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~iR~~~~~~~ 242 (266)
++++++++++++.|++ +.. ..+...+++.|. ++++.++.....++.+|+.+|+++||.+.+.+.+++|+++++.+
T Consensus 307 ~~~~~~~~~l~~~L~~-~~~~~~~~~~~~~~G~---~~~~~l~~~~~~~~~~~~~~l~~~Gv~v~~~g~~~lRl~~~~~~ 382 (403)
T PRK05093 307 EGVKARRQRFVDGLQK-INQKYGVFSEIRGMGL---LIGAELKPQYKGRARDFLNAAAEEGVMVLVAGPDVLRFAPSLVI 382 (403)
T ss_pred HHHHHHHHHHHHHHHH-HHhhCCCeEeEeeCce---EEEEEecCcchhHHHHHHHHHHHCCeEEecCCCCEEEEeCCCCC
Confidence 9999999999999998 543 222222667888 99999865211256789999999999999877799999999999
Q ss_pred CHHHHHHHHHHHHHHHHHH
Q psy6547 243 TEQELREGLDIIINTINTM 261 (266)
Q Consensus 243 t~~~i~~~~~~l~~~~~~~ 261 (266)
+++++++++++|++++.++
T Consensus 383 ~~~~i~~~~~~l~~~l~~~ 401 (403)
T PRK05093 383 EEADIDEGLARFEKAVAKV 401 (403)
T ss_pred CHHHHHHHHHHHHHHHHHh
Confidence 9999999999999998764
No 27
>TIGR02407 ectoine_ectB diaminobutyrate--2-oxoglutarate aminotransferase. Members of this family of class III pyridoxal-phosphate-dependent aminotransferases are diaminobutyrate--2-oxoglutarate aminotransferase (EC 2.6.1.76) that catalyze the first step in ectoine biosynthesis from L-aspartate beta-semialdehyde. This family is readily separated phylogenetically from enzymes with the same substrate and product but involved in other process such as siderophore or 1,3-diaminopropane biosynthesis. The family TIGR00709 previously included both groups but has now been revised to exclude the ectoine biosynthesis proteins of this family. Ectoine is a compatible solute particularly effective in conferring salt tolerance.
Probab=100.00 E-value=2.4e-37 Score=271.46 Aligned_cols=252 Identities=27% Similarity=0.471 Sum_probs=217.9
Q ss_pred CccCCcCcccccCCCCCCceeecCCC--------HHHHHHHHhcC----CCEEEEEEccccCCCCcccCChHHHHHHHHH
Q psy6547 2 LITTDPTSYNEFGPHMPGYNIIPYND--------VDALEAKLKSN----PNICAFMVEPIQGEAGAVVPDDGYLKKVRAL 69 (266)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~v~~~~~~d--------~~~l~~~l~~~----~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l 69 (266)
|+++++.....|.|..++++.+|+++ +++++++++++ +++++|++||+++++|.++++++++++|+++
T Consensus 144 s~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~aavi~Epi~g~~G~~~~~~~~l~~l~~l 223 (412)
T TIGR02407 144 SVTGNRFKRQGAGVPLSNVSRMPYDGYLGGDVDTIAYFEKLLEDSSSGVDLPAAVILETVQGEGGINVASDEWLQRLEKL 223 (412)
T ss_pred HhcCCcccccCCCCCCCCeEECCCCCccccchhHHHHHHHHHHhccCCCCceEEEEeccccCCCCCccCCHHHHHHHHHH
Confidence 45667777788888888999999853 77889998643 3689999999999999988999999999999
Q ss_pred HHhcCCEEEEeccccCcCCcCcccccccCCCCcCeeeecccccC-CchhhhhheecHHhhhccCCCCCCCCCCCcHHHHH
Q psy6547 70 CSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSG-GLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACK 148 (266)
Q Consensus 70 ~~~~g~~li~De~~~~~~~~g~~~~~~~~~~~~d~~~~sK~~~~-g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (266)
|++||+++|+||+++||||+|..|+++.+++.||++++||++++ | +|+|++++++++ +.+....+.+||++|+++++
T Consensus 224 c~~~g~llI~DEV~tG~GRtG~~~a~~~~~v~PDi~~~~K~lg~~G-~pigav~~~~~~-~~~~~~~~~~T~~gnpl~~a 301 (412)
T TIGR02407 224 CRRHDILLIVDDIQAGCGRTGTFFSFEPAGIEPDIVCLSKSISGYG-LPLALTLIKPEL-DVWKPGEHNGTFRGNNLAFV 301 (412)
T ss_pred HHHcCCEEEEechhhCCCccchhHHhcccCCCCCEEEechhccCCc-cceeEEEEchhh-hccCCCccCCCCCccHHHHH
Confidence 99999999999999999999998888889999999999999998 9 999999998886 66655678899999999999
Q ss_pred HHHHHHHH-HhhccHHHHHHHHHHHHHHHhhccccc-CCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCcee
Q psy6547 149 LAMTALDV-ILEENMIENAYKMGEIFRSELSSPANK-SKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVT 226 (266)
Q Consensus 149 a~~~~l~~-~~~~~~~~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~ 226 (266)
++.++++. ++++++.+++++.+++++++++..... +.....+++.|. ++|+.+++ ......+.+.|.++||++
T Consensus 302 aa~a~l~~~i~~~~l~~~~~~~g~~l~~~l~~l~~~~~~~~~~vrg~Gl---~~~l~l~~--~~~~~~~~~~~~~~Gv~v 376 (412)
T TIGR02407 302 TATAALEYYWSDDAFEKAVQRKSEIIQERLDRIVAEYPELIKQVRGRGL---MQGIECGD--GDLAGKIAKAAFENGLII 376 (412)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHhhCCCceEeeeccee---EEEEEecC--hHHHHHHHHHHHHCCCEE
Confidence 99999995 777889999999999999999873332 212233788999 99999976 345678999999999999
Q ss_pred ccCC--CCEEEEeccCCCCHHHHHHHHHHHHHHHHH
Q psy6547 227 KPIS--NNIIRLSPALNITEQELREGLDIIINTINT 260 (266)
Q Consensus 227 ~~~~--~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~ 260 (266)
.+.+ .+.+|++|++.+|++++++++++|++++++
T Consensus 377 ~~~~~~~~~lr~~p~l~~t~~~i~~~~~~l~~~l~~ 412 (412)
T TIGR02407 377 ETSGPNDEVIKLLPPLTIDEETLQQGLDILEQAVEE 412 (412)
T ss_pred eccCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHhC
Confidence 8653 479999999999999999999999998863
No 28
>PRK07483 hypothetical protein; Provisional
Probab=100.00 E-value=4.1e-37 Score=271.59 Aligned_cols=259 Identities=31% Similarity=0.508 Sum_probs=219.2
Q ss_pred CCccCCcCcccccCCCCCCceeecCC----C--------------HHHHHHHHhc--CCCEEEEEEccccC-CCCcccCC
Q psy6547 1 MLITTDPTSYNEFGPHMPGYNIIPYN----D--------------VDALEAKLKS--NPNICAFMVEPIQG-EAGAVVPD 59 (266)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~v~~~~~~----d--------------~~~l~~~l~~--~~~~~~i~~~~~~~-~~g~~~~~ 59 (266)
+|+++++.....|.|..+++.+++++ + ++++++++.+ .+++++|++||+++ .+|.++++
T Consensus 140 ~s~s~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~iAAvivEPiqg~~gG~~~~~ 219 (443)
T PRK07483 140 LAIGGNAWRREPFAPLLIEAHHVSPCYAYREQRAGESDEAYGQRLADELEAKILELGPDTVAAFVAETVVGATAGAVPPV 219 (443)
T ss_pred hhhcCCcccccccCCCCCCCEEeCCCccccccccCCCHHHHHHHHHHHHHHHHHhcCCCceEEEEEeCcccCcCCeEeCC
Confidence 35666777777888888888888643 3 2677776643 24799999999997 57889999
Q ss_pred hHHHHHHHHHHHhcCCEEEEeccccCcCCcCcccccccCCCCcCeeeecccccCCchhhhhheecHHhhhccCCC----C
Q psy6547 60 DGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPG----T 135 (266)
Q Consensus 60 ~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~~~~~~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~~----~ 135 (266)
++++++++++|++||+++|+||+++||||+|..|+++.+++.||+++++|++++|++|+|.+++++++++.+... .
T Consensus 220 ~~fl~~lr~lc~~~gillI~DEV~tGfGRtG~~~a~~~~gv~PDiv~~gK~l~gG~~Pi~av~~~~~i~~~~~~~~~~~~ 299 (443)
T PRK07483 220 PGYFKRIREVCDRYGVLLILDEVMCGMGRTGTLFACEEDGVAPDLVTIAKGLGAGYQPIGAVLASDRIYDAIADGSGFFQ 299 (443)
T ss_pred HHHHHHHHHHHHHhCCEEEEecceeCcccCcHHHHHhhcCCCCCeeeehhhhccCccccEEEEEcHHHHHHHhcCCCccc
Confidence 999999999999999999999999999999999999999999999999999999944999999999998877532 4
Q ss_pred CCCCCCCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccc-CCCcccEEecCccceeeEEEEeeCc----c-
Q psy6547 136 HGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSSPANK-SKASFKLSSGGLKKSINTLILSVSA----I- 209 (266)
Q Consensus 136 ~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~----~- 209 (266)
+.+||++||++++++.++|+.++++++.+++++..++++++|++.... +.+.. +++.|+ |+.+++.... .
T Consensus 300 h~~T~~gnpl~~aaa~a~l~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~-vRG~Gl---m~gie~~~~~~~~~~~ 375 (443)
T PRK07483 300 HGHTYLGHATACAAALAVQRVIAEDGLLANVRARGEQLRARLRERLGQHPHVGD-IRGRGL---FVGVELVADRATKAPF 375 (443)
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhcCCCeee-Eeeccc---EEEEEEeecccccCCC
Confidence 789999999999999999999999999999999999999999873333 33444 899999 9999986421 0
Q ss_pred ----chHHHHHHHHHHCCceeccCC-------CCEEEEeccCCCCHHHHHHHHHHHHHHHHHHhh
Q psy6547 210 ----LEVYDVCIKMKDAGLVTKPIS-------NNIIRLSPALNITEQELREGLDIIINTINTMAA 263 (266)
Q Consensus 210 ----~~~~~~~~~l~~~gi~~~~~~-------~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~~~ 263 (266)
.....+++.++++|+++.+.+ ++.+||+|++.+|++++|+++++|++++++...
T Consensus 376 ~~~~~~~~~~~~~~~~~Gll~~~~~~~~~~~~~~~l~~~PpL~it~~eid~~~~~l~~~l~~~~~ 440 (443)
T PRK07483 376 DPALKLHARIKREAMARGLMVYPMGGTIDGVRGDHVLLAPPFIITAAQIDEIVERLGDAIDAALA 440 (443)
T ss_pred CchhhHHHHHHHHHHHCCcEEEecCccccCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 124578899999999998653 479999999999999999999999999987643
No 29
>PRK06105 aminotransferase; Provisional
Probab=100.00 E-value=5.4e-37 Score=272.05 Aligned_cols=255 Identities=26% Similarity=0.444 Sum_probs=220.5
Q ss_pred CccCCcCcccccCCCCCCceeecCCC------------------HHHHHHHHhc--CCCEEEEEEccccCCCCcccCChH
Q psy6547 2 LITTDPTSYNEFGPHMPGYNIIPYND------------------VDALEAKLKS--NPNICAFMVEPIQGEAGAVVPDDG 61 (266)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~v~~~~~~d------------------~~~l~~~l~~--~~~~~~i~~~~~~~~~g~~~~~~~ 61 (266)
|+++.+..++.|.|..+++.++++++ .+++++++.+ .+++++|++||+++++|+++++++
T Consensus 160 s~t~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~iAavIvEPiqg~gG~~~~~~~ 239 (460)
T PRK06105 160 SLTGLPNNHRSFDLPLDRILHTGCPHYYRFGLPGESEEAFATRLANELEALILAEGPDTIAAFIGEPVMGAGGVIVPPKT 239 (460)
T ss_pred eccCCcccccccCCCCCCCEEcCCCcccccccCCCChHHHHHHHHHHHHHHHHHcCCCceEEEEEccccCCCCCccCCHH
Confidence 45666777778888888899988764 3678888843 247999999999999999999999
Q ss_pred HHHHHHHHHHhcCCEEEEeccccCcCCcCcccccccCCCCcCeeeecccccCCchhhhhheecHHhhhccCC-------C
Q psy6547 62 YLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVP-------G 134 (266)
Q Consensus 62 ~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~~~~~~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~-------~ 134 (266)
++++++++|++||+++|+||+++|||++|..|+++.+++.||++++||+++||++|+|++++++++++.+.. .
T Consensus 240 yl~~lr~lc~~~~~llI~DEv~tG~GRtG~~f~~~~~~v~PDi~~~gK~lggG~~P~~av~~~~~i~~~~~~~~~~~~~~ 319 (460)
T PRK06105 240 YWEKIQAVLRKYDILLVADEVICGFGRTGNMFGCETFGIKPDILVMSKQLSSSYQPLSAVLMNEKVYDPIADESGKIGTF 319 (460)
T ss_pred HHHHHHHHHHHcCCeEEEeccccCCCcCchhhhHHhcCCCCCeeeeecccccCcccceEEEEcHHHHHHHhcccccCccc
Confidence 999999999999999999999999999999889889999999999999999885699999999999887653 1
Q ss_pred CCCCCCCCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccc-CCCcccEEecCccceeeEEEEeeCcc----
Q psy6547 135 THGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSSPANK-SKASFKLSSGGLKKSINTLILSVSAI---- 209 (266)
Q Consensus 135 ~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~---- 209 (266)
.+.+|+++||++++++.++|+.++++++.++++++.++++++|++ +.. +.+.. +++.|+ ++.+++.....
T Consensus 320 ~h~~T~~gnpl~~aaa~a~L~~i~~~~l~~~v~~~g~~l~~~L~~-l~~~~~v~~-vrG~Gl---~~gie~~~~~~~~~~ 394 (460)
T PRK06105 320 GHGFTASGHPVAAAVALENLAIIEERDLVGNAAERGARLQARLRA-LADHPLVGE-VRGVGL---IAAVELVADKATKTP 394 (460)
T ss_pred ccCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH-hhcCCCeEE-EEecce---EEEEEEecCcccCCC
Confidence 378899999999999999999999999999999999999999999 543 33444 899999 99999853211
Q ss_pred -----chHHHHHHHHHHCCceeccCCCCEEEEeccCCCCHHHHHHHHHHHHHHHHHHh
Q psy6547 210 -----LEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINTMA 262 (266)
Q Consensus 210 -----~~~~~~~~~l~~~gi~~~~~~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~~ 262 (266)
..+..++..++++|+++.+. ++.+|++|++.+|++++++++++|+++++++.
T Consensus 395 ~~~~~~~a~~i~~~~~~~Gvl~~~~-g~~i~l~Ppl~it~~eid~~~~~l~~~l~~~~ 451 (460)
T PRK06105 395 FEPPGKVGARANAAAHEHGVISRAM-GDTLAFCPPLIITAAQVDEMVDRFGRALDDVA 451 (460)
T ss_pred CCchhHHHHHHHHHHHHCCeEEEec-CCEEEEECCCccCHHHHHHHHHHHHHHHHHHH
Confidence 11356888899999999886 47999999999999999999999999998764
No 30
>PRK04013 argD acetylornithine/acetyl-lysine aminotransferase; Provisional
Probab=100.00 E-value=4.3e-37 Score=264.43 Aligned_cols=239 Identities=36% Similarity=0.611 Sum_probs=211.9
Q ss_pred CCccCCcCcccccCCCCCCceeecCCCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEe
Q psy6547 1 MLITTDPTSYNEFGPHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIAD 80 (266)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~v~~~~~~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~D 80 (266)
+++++++..+..|.|..+++..+++||++++++.+. +++++|++||+++.+|.++++++++++++++|++||+++|+|
T Consensus 125 ls~~~~~~~~~~~~p~~~~~~~~~~~d~~~l~~~i~--~~~aAvivEpi~g~gG~~~~~~~yl~~lr~lc~~~gillI~D 202 (364)
T PRK04013 125 LSATWKPKYREDFEPLVPGFKHIPFNDVEAAKEAIT--KETAAVIFEPIQGEGGIVPAKEEFVKTLRDLTEDVGALLIAD 202 (364)
T ss_pred ccCCCCcccccCCCCCCCCcEEecCCCHHHHHHHhc--CCcEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEe
Confidence 356777888888999999999999999999999993 579999999999999999999999999999999999999999
Q ss_pred ccccCcCCcCcccccccCCCCcCeeeecccccCCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHhhc
Q psy6547 81 EVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEE 160 (266)
Q Consensus 81 e~~~~~~~~g~~~~~~~~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~ 160 (266)
|+++|+ |+|..|+++.+++.||+++++|++++| +|+|.++.+.++ ....+.+||++||++++++.++|+.++++
T Consensus 203 Ev~tG~-RtG~~~a~~~~gv~PDiv~~gK~lggG-~P~~a~~~~~~~----~~~~~~~T~~gnp~~~aaa~a~l~~i~~~ 276 (364)
T PRK04013 203 EVQSGL-RTGKFLAIEHYKVEPDIVTMGKGIGNG-VPVSLTLTNFDV----ERGKHGSTFGGNPLACKAVAVTLRILRRE 276 (364)
T ss_pred chhhcC-CCCchhHHHhcCCCCCEEEecccccCC-ceeEEEEecccc----cCCCcCCCCCcCHHHHHHHHHHHHHHHhc
Confidence 999999 999999999999999999999999999 999999988765 23468899999999999999999999999
Q ss_pred cHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccCCCCEEEEeccC
Q psy6547 161 NMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPISNNIIRLSPAL 240 (266)
Q Consensus 161 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~iR~~~~~ 240 (266)
++.++.++. + ++ +..+.+.. +++.|+ |+.+++.. ....+.+.++++|+++.+.+.+.+||.|++
T Consensus 277 ~l~~~~~~~---l----~~-l~~~~v~~-vRG~Gl---~~gve~~~----~~~~i~~~~~~~Gll~~~~g~~vlr~~Ppl 340 (364)
T PRK04013 277 RLVEKAGEK---F----IE-IKGERVVT-TRGRGL---MIGIVLKK----PVGKYVEELQNRGYLVHTAGQRVIRLLPPL 340 (364)
T ss_pred cHHHHHHHH---H----HH-hccCccee-eeeCcE---EEEEEeCC----cHHHHHHHHHhCCcEEeeCCCCEEEEeCCc
Confidence 998888764 2 22 22234555 999999 99999965 356789999999999998767899999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHhh
Q psy6547 241 NITEQELREGLDIIINTINTMAA 263 (266)
Q Consensus 241 ~~t~~~i~~~~~~l~~~~~~~~~ 263 (266)
.+|++++++++++|++++++..+
T Consensus 341 ~it~~~i~~~~~~l~~~l~~~~~ 363 (364)
T PRK04013 341 IISKDTMEEAKSAIEGVINDILG 363 (364)
T ss_pred ccCHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999988654
No 31
>PRK06916 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=100.00 E-value=4e-37 Score=272.87 Aligned_cols=256 Identities=34% Similarity=0.568 Sum_probs=220.9
Q ss_pred CCccCCcCcccccCCCCCCceeecCC-----------------CHHHHHHHHhcC-CCEEEEEEcc-ccCCCCcccCChH
Q psy6547 1 MLITTDPTSYNEFGPHMPGYNIIPYN-----------------DVDALEAKLKSN-PNICAFMVEP-IQGEAGAVVPDDG 61 (266)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~v~~~~~~-----------------d~~~l~~~l~~~-~~~~~i~~~~-~~~~~g~~~~~~~ 61 (266)
+|+++++..++.|.|+.+++..+|++ +++++++.++++ +++++|++|| +++.+|.++++++
T Consensus 166 ls~s~~~~~~~~~~~~~~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~iAAvi~EP~iqg~gG~~~~~~~ 245 (460)
T PRK06916 166 VSVGAIDLFHQVYSSLLFEAIKMPYPYTYRSPYGNDKAEIVKKHLEELEELLKEKHEEIAAIIVEPLVQGAGGMITMPKG 245 (460)
T ss_pred HhccCCcccccccCCCCCCCEEeCCCcccccccCCChHHHHHHHHHHHHHHHHhCCCcEEEEEEeccccCCCCcccCCHH
Confidence 35667777778899988888888765 246678888654 4899999999 6999999999999
Q ss_pred HHHHHHHHHHhcCCEEEEeccccCcCCcCcccccccCCCCcCeeeecccccCCchhhhhheecHHhhhccCC-------C
Q psy6547 62 YLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVP-------G 134 (266)
Q Consensus 62 ~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~~~~~~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~-------~ 134 (266)
++++++++|++||+++|+||+++||||+|..|+++.+++.||+++++|+++||++|+|.+++++++++.+.. .
T Consensus 246 fl~~lr~lc~~~g~llI~DEV~TG~GRtG~~~a~~~~gv~PDiv~~gK~l~gG~~Pi~av~~~~ei~~~~~~~~~~~~~~ 325 (460)
T PRK06916 246 YLKGLRNLCTKYNVLFITDEVATGFGRTGKMFACEHENVTPDIMTAGKGLTGGYLPIAITVTTDEIYNAFYGDYEEQKTF 325 (460)
T ss_pred HHHHHHHHHHHcCCEEEeechhhCCCcCchhhHHHhcCCCCCeeeeehhhhcCccccceeeecHHHHHHhhccccccCcc
Confidence 999999999999999999999999999999999999999999999999999995599999999999876642 3
Q ss_pred CCCCCCCCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccc-CCCcccEEecCccceeeEEEEeeCcc----
Q psy6547 135 THGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSSPANK-SKASFKLSSGGLKKSINTLILSVSAI---- 209 (266)
Q Consensus 135 ~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~---- 209 (266)
.+.+||+++|++++++.++|+.++++++.++++++.+++++.|++ +.. +.+.. +++.|+ |+.+++.++..
T Consensus 326 ~~~~T~~gnpl~~aaa~a~l~~l~~~~l~~~~~~~g~~l~~~l~~-l~~~~~v~~-vrG~Gl---m~giel~~~~~~~~~ 400 (460)
T PRK06916 326 FHGHSYTGNPLGCAVALANLELYEKTNLIEQVARKTEYVATQLED-LFALKHVGD-IRQLGL---MVGIELVKNKETKEP 400 (460)
T ss_pred ccCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH-hhcCCCeEE-eecCCc---eeeEEeecccccccC
Confidence 578899999999999999999999999999999999999999998 543 33445 899999 99998864211
Q ss_pred --c---hHHHHHHHHHHCCceeccCCCCEEEEeccCCCCHHHHHHHHHHHHHHHHHHh
Q psy6547 210 --L---EVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINTMA 262 (266)
Q Consensus 210 --~---~~~~~~~~l~~~gi~~~~~~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~~ 262 (266)
. ....+++.|+++||++.+. ++.+|+.|++.+|++++++++++|+++++++.
T Consensus 401 ~~~~~~~~~~i~~~~~~~Gvl~~~~-g~~l~~~Ppl~it~~~id~~~~~l~~~l~~~~ 457 (460)
T PRK06916 401 FEWTERVGVQVCKRSRELGMLTRPL-GNTIVFMPPLASTIDELDEMLRILYKAISDVT 457 (460)
T ss_pred CCchhhHHHHHHHHHHHCCeEEEec-CCEEEEeCCcccCHHHHHHHHHHHHHHHHhhc
Confidence 0 1357889999999999886 47999999999999999999999999998754
No 32
>PRK13360 omega amino acid--pyruvate transaminase; Provisional
Probab=100.00 E-value=7.9e-37 Score=269.72 Aligned_cols=255 Identities=30% Similarity=0.551 Sum_probs=219.7
Q ss_pred CCccCCcCcccccCCCCCCceeecCCC------------------HHHHHHHHhcC--CCEEEEEEccccCCCCcccCCh
Q psy6547 1 MLITTDPTSYNEFGPHMPGYNIIPYND------------------VDALEAKLKSN--PNICAFMVEPIQGEAGAVVPDD 60 (266)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~v~~~~~~d------------------~~~l~~~l~~~--~~~~~i~~~~~~~~~g~~~~~~ 60 (266)
+|+++++..++.|.|+.+++.++|++. +++|+++++.. +++++|++||+++++|.+.+++
T Consensus 156 ls~tg~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~aavivEpi~g~~G~~~~~~ 235 (442)
T PRK13360 156 ISVGGIVPNRKAFGALLPGVDHLPHTLDLARNAFSKGQPEHGAELADELERLVTLHDASTIAAVIVEPVAGSTGVLIPPK 235 (442)
T ss_pred hhccCChhhhhccCCCCCCCEEeCCCchhhccccCCChHHHHHHHHHHHHHHHHhcCCCcEEEEEEccccCCCCCccCCH
Confidence 356777777888888888888888762 46888888642 4799999999999999999999
Q ss_pred HHHHHHHHHHHhcCCEEEEeccccCcCCcCcccccccCCCCcCeeeecccccCCchhhhhheecHHhhhccCC-------
Q psy6547 61 GYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVP------- 133 (266)
Q Consensus 61 ~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~~~~~~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~------- 133 (266)
+++++|+++|++||+++|+||+++|||++|..|.++.+++.||++++||++++|++|+|.+++++++++.+..
T Consensus 236 ~fl~~lr~lc~~~g~llI~DEv~tG~GrtG~~~a~~~~gv~PDivt~gK~l~gG~~P~gav~~~~~i~~~~~~~~~~~~~ 315 (442)
T PRK13360 236 GYLQRLREICDKHGILLIFDEVITGFGRLGAPFAAQYFGVTPDLLTCAKGLTNGAIPMGAVFVSSEIHDAFMQGPEAGIE 315 (442)
T ss_pred HHHHHHHHHHHHcCCEEEEechhhCCCCCccchhhhhcCCCCceeeeeeccccCccceEEEEEcHHHHHHhhcCCccccc
Confidence 9999999999999999999999999999999888888999999999999999886799999999999887643
Q ss_pred CCCCCCCCCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccc-CCCcccEEecCccceeeEEEEeeCc---c
Q psy6547 134 GTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSSPANK-SKASFKLSSGGLKKSINTLILSVSA---I 209 (266)
Q Consensus 134 ~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~---~ 209 (266)
..+.+||+++|++++++.++|+.++++++.++++++.+++++.|++ +.. +.+.. +++.|+ ++.+.+.... .
T Consensus 316 ~~~~~T~~g~pl~~aaa~a~L~~l~~~~l~~~~~~~g~~l~~~l~~-l~~~~~v~~-vrG~Gl---~~~~~l~~~~~~~~ 390 (442)
T PRK13360 316 FFHGYTYSGHPLACAAALATLDLYEREGLLTRAARLAPYWEDALHS-LRDAPHVID-IRNLGL---VGAVELAPRDGKPG 390 (442)
T ss_pred cccCCCCCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH-hhcCCCeee-eeccce---EEEEEEecCCCCcc
Confidence 2467899999999999999999999889999999999999999998 543 34444 889999 8888775421 1
Q ss_pred chHHHHHHHHHHCCceeccCCCCEEEEeccCCCCHHHHHHHHHHHHHHHHHH
Q psy6547 210 LEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINTM 261 (266)
Q Consensus 210 ~~~~~~~~~l~~~gi~~~~~~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~ 261 (266)
..+.++.++|.++||++.+. ++.+||+|++.+|++++|+++++|+++++++
T Consensus 391 ~~~~~~~~~l~~~Gvl~~~~-~~~lr~~Ppl~~t~~eid~~~~~l~~~l~~~ 441 (442)
T PRK13360 391 KRAYEVFLKCFEKGLMIRYT-GDILALSPPLIIEEAQIDELFDILAQALKET 441 (442)
T ss_pred hhHHHHHHHHHHCCcEEEec-CCEEEEeCCCccCHHHHHHHHHHHHHHHHHh
Confidence 23567888999999999876 4789999999999999999999999998764
No 33
>PRK06931 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional
Probab=100.00 E-value=4.6e-37 Score=272.24 Aligned_cols=256 Identities=29% Similarity=0.448 Sum_probs=217.2
Q ss_pred CccCCcCcccccCCCCCCceeecCCCH-------------HHH----HHHHhc----CCCEEEEEEccccCCCCcccCCh
Q psy6547 2 LITTDPTSYNEFGPHMPGYNIIPYNDV-------------DAL----EAKLKS----NPNICAFMVEPIQGEAGAVVPDD 60 (266)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~v~~~~~~d~-------------~~l----~~~l~~----~~~~~~i~~~~~~~~~g~~~~~~ 60 (266)
|+++++..++.|.|+.+++..+|+++. +++ ++.+++ .+++++|++||+++.+|.+++++
T Consensus 166 s~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iAAvI~EPiqg~gG~~~~~~ 245 (459)
T PRK06931 166 AVTGNLSPKNAVNGLMPGVQFMPYPHEYRCPLGIGGEAGVKALTYYFENFIEDVESGVRKPAAVILEAIQGEGGVNPAPV 245 (459)
T ss_pred hhcCCcccccCCCCCCCCcEEeCCCccccccccCCchhHHHHHHHHHHHHHHhhhcCCCceEEEEEccccCCCCCcCCCH
Confidence 456777777788999999999988752 333 334421 23699999999999999999999
Q ss_pred HHHHHHHHHHHhcCCEEEEeccccCcCCcCcccccccCCCCcCeeeecccccCCchhhhhheecHHhhhccCCCCCCCCC
Q psy6547 61 GYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTY 140 (266)
Q Consensus 61 ~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~~~~~~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~ 140 (266)
+++++++++|++||+++|+||+++||||+|..|+++.+++.||+++++|++++| +|+|.+++++++ +.+....+.+||
T Consensus 246 ~yl~~lr~lc~~~g~LlI~DEV~tGfGRtG~~~a~~~~gv~PDivt~gK~l~gG-~Pi~av~~~~~~-~~~~~~~~~~T~ 323 (459)
T PRK06931 246 EWLQKIREVTQKHGILLIVDEVQAGFARTGKMFAFEHAGIEPDIIVMSKAVGGG-LPLAVLGIKKEF-DAWQPGGHTGTF 323 (459)
T ss_pred HHHHHHHHHHHHcCCEEEEecchhcCCcCchHHHhhhcCCCCCEEEecccccCC-cceeeeeeHHHH-hhccCCCCCCCC
Confidence 999999999999999999999999999999999999999999999999999999 999998887764 666556789999
Q ss_pred CCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccc-CCCcccEEecCccceeeEEEEeeCc-----------
Q psy6547 141 GGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSSPANK-SKASFKLSSGGLKKSINTLILSVSA----------- 208 (266)
Q Consensus 141 ~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~----------- 208 (266)
++||+++++++++|+.++++++.+++++..++++++|++.... +.+.. +++.|+ |+.+++.+..
T Consensus 324 ~gnpla~aaala~L~~l~~~~l~~~~~~~G~~l~~~L~~l~~~~~~i~~-vrG~Gl---m~giel~~~~~~~~~~~~~~~ 399 (459)
T PRK06931 324 RGNQLAMATGLTTLKILKEENLAQNAAERGEWLKAQLAELQKRYPCIGN-VRGRGL---MIGIEIVDERQPADAMGSYPA 399 (459)
T ss_pred CCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHhCCCeEe-EecCce---EEEEEEccCcccccccccCCc
Confidence 9999999999999999999999999999999999999993333 44444 999999 9999985421
Q ss_pred -cchHHHHHHHHHHCCceeccCC--CCEEEEeccCCCCHHHHHHHHHHHHHHHHHHhh
Q psy6547 209 -ILEVYDVCIKMKDAGLVTKPIS--NNIIRLSPALNITEQELREGLDIIINTINTMAA 263 (266)
Q Consensus 209 -~~~~~~~~~~l~~~gi~~~~~~--~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~~~ 263 (266)
..-...+...|.++|+++.+.+ ++.+|+.|++.+|+++++++++++++++.+..+
T Consensus 400 ~~~~~~~~~~~~~~~Gvl~~~~~~~~~~l~~~Ppl~it~~eid~~~~~l~~~l~~~~~ 457 (459)
T PRK06931 400 DGELAAAIQKACFENGLLLERGGRNGNVVRLLPPLLITQAECEEFIDRFEQALLAAVK 457 (459)
T ss_pred cHHHHHHHHHHHHHCCcEEeecCCCCCEEEEECCCCcCHHHHHHHHHHHHHHHHHHHh
Confidence 0124568888999999998653 588999999999999999999999999987543
No 34
>PRK06173 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=100.00 E-value=5.7e-37 Score=269.46 Aligned_cols=249 Identities=28% Similarity=0.501 Sum_probs=215.6
Q ss_pred cCcccccCCCCCCceeecCC-----------CHHHHHHHHhcC-CCEEEEEEccc-cCCCCcccCChHHHHHHHHHHHhc
Q psy6547 7 PTSYNEFGPHMPGYNIIPYN-----------DVDALEAKLKSN-PNICAFMVEPI-QGEAGAVVPDDGYLKKVRALCSQY 73 (266)
Q Consensus 7 ~~~~~~~~~~~~~v~~~~~~-----------d~~~l~~~l~~~-~~~~~i~~~~~-~~~~g~~~~~~~~l~~l~~l~~~~ 73 (266)
+..+..|.|..+.+.++|++ ++++|++.++++ +++++|++||+ ++.+|.++++++++++++++|++|
T Consensus 161 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~l~~~i~~~~~~iAAvi~EPi~qg~gG~~~~~~~yl~~l~~lc~~~ 240 (429)
T PRK06173 161 TGMHGLFNHSLPVQYFLPQPSIKFGEEWNDEAIEPLQDLLEQKGDEIAALILEPVVQGAGGMYFYSPTYLVKARELCDQY 240 (429)
T ss_pred hhhhhcccccCCCCeEeCCCCcccchhHHHHHHHHHHHHHHhCCCcEEEEEEcchhhccCCcccCCHHHHHHHHHHHHHc
Confidence 33556677777778888765 366788888643 48999999996 999999999999999999999999
Q ss_pred CCEEEEeccccCcCCcCcccccccCCCCcCeeeecccccCCchhhhhheecHHhhhccCC-----CCCCCCCCCcHHHHH
Q psy6547 74 NVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVP-----GTHGSTYGGNPLACK 148 (266)
Q Consensus 74 g~~li~De~~~~~~~~g~~~~~~~~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~ 148 (266)
|+++|+||+|+|||++|..|+.+.+++.||++++||+++||++|++.++.++++++.+.. ..+++|+.++|++++
T Consensus 241 g~llI~DEv~tG~GrtG~~~a~~~~gv~PDiv~~gK~l~gG~~p~~a~~~~~~i~~~~~~~~~~~~~~~~T~~g~p~~~a 320 (429)
T PRK06173 241 GVLLIFDEIATGFGRTGKLFALEHAGVVPDIMCIGKALTGGYLTLSATITTEAIAQTICSGEAKCFMHGPTFMANPLACA 320 (429)
T ss_pred CCeEEecchhcCCCcCCcchHHHhcCCCCCEEEeehhhhCCccccceEEecHHHHHHHhcCCCCccccCCCCCcCHHHHH
Confidence 999999999999999999888888999999999999999995699999999998887743 247788999999999
Q ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceecc
Q psy6547 149 LAMTALDVILEENMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKP 228 (266)
Q Consensus 149 a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~ 228 (266)
++.++|+.++++++.++++++.+++++.|++....+.+.. +++.|. ++.+.+.+ ..++..+++.|+++||++.+
T Consensus 321 aa~a~l~~i~~~~~~~~~~~~g~~l~~~L~~~~~~~~v~~-vRg~Gl---~~~iel~~--~~~~~~i~~~l~e~Gi~v~~ 394 (429)
T PRK06173 321 IAAESIRLLLESPWQQNIQRIEAQLKQELAPAAEFDSVAE-VRVLGA---IGVVEMKE--PVNMATLQPRFVEHGIWVRP 394 (429)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhcCCCeee-eeccce---EEEEEeCC--cccHHHHHHHHHHCCeEEEe
Confidence 9999999999989999999999999999997223344444 788999 99999976 34567899999999999988
Q ss_pred CCCCEEEEeccCCCCHHHHHHHHHHHHHHHHHHh
Q psy6547 229 ISNNIIRLSPALNITEQELREGLDIIINTINTMA 262 (266)
Q Consensus 229 ~~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~~ 262 (266)
.+ +.+|+.|++..|++++++++++|++++.+.-
T Consensus 395 ~g-~~l~~~Ppl~it~~ei~~~~~~l~~~l~~~~ 427 (429)
T PRK06173 395 FG-KLVYIMPPFIISPDELSQLTSGLLRVLKQEY 427 (429)
T ss_pred cC-CEEEEeCCccCCHHHHHHHHHHHHHHHHHHh
Confidence 74 7999999999999999999999999998753
No 35
>PRK07036 hypothetical protein; Provisional
Probab=100.00 E-value=1.2e-36 Score=270.03 Aligned_cols=255 Identities=29% Similarity=0.518 Sum_probs=217.1
Q ss_pred CccCCcCcccccCCCCCCceeecCCC-----------------HHHHHHHHhc--CCCEEEEEEccccCCCCcccCChHH
Q psy6547 2 LITTDPTSYNEFGPHMPGYNIIPYND-----------------VDALEAKLKS--NPNICAFMVEPIQGEAGAVVPDDGY 62 (266)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~v~~~~~~d-----------------~~~l~~~l~~--~~~~~~i~~~~~~~~~g~~~~~~~~ 62 (266)
|+++++..+..|.|+.+.+.++++++ ++.+++.+.+ .+++++|++||+++++|.+.+++++
T Consensus 163 s~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~iAavi~EPv~g~gG~~~p~~~y 242 (466)
T PRK07036 163 SLTGKAADRTEFDYASDLVHHLSSPNPYRRPAGMSEAAFCDFLVDEFEDKILSLGADNIAAFIAEPILGSGGVIVPPPGY 242 (466)
T ss_pred cccCCCcccccccCCCCCcEEecCCcccccccCCChHHHHHHHHHHHHHHHHHcCCCceEEEEEeCCcCCCCCccCCHHH
Confidence 55667777777888888888877654 2446666643 2489999999999999999999999
Q ss_pred HHHHHHHHHhcCCEEEEeccccCcCCcCcccccc-cCCCCcCeeeecccccCCchhhhhheecHHhhhccCC-------C
Q psy6547 63 LKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIH-YEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVP-------G 134 (266)
Q Consensus 63 l~~l~~l~~~~g~~li~De~~~~~~~~g~~~~~~-~~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~-------~ 134 (266)
+++|+++|++||+++|+||+++||||+|..|..+ .+++.||+++++|++++|++|+|.+++++++++.+.. .
T Consensus 243 l~~lr~lc~~~g~llI~DEV~tGfGRtG~~~~~~~~~gv~PDivt~gK~l~gG~~Pi~av~~~~~i~~~~~~~~~~~~~~ 322 (466)
T PRK07036 243 HARMREICRRYDILYISDEVVTGFGRLGHFFASEAVFGIQPDIITFAKGLTSGYQPLGAVIISERLLDVISGPNAKGNVF 322 (466)
T ss_pred HHHHHHHHHHcCCEEEEeechhCCCcCchhhhhhhhcCCCCCEEEEccccccCccccEEEEEcHHHHHHHhcccCcCccc
Confidence 9999999999999999999999999999878877 6899999999999999995599999999999887652 3
Q ss_pred CCCCCCCCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccc-CCCcccEEecCccceeeEEEEeeCcc----
Q psy6547 135 THGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSSPANK-SKASFKLSSGGLKKSINTLILSVSAI---- 209 (266)
Q Consensus 135 ~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~---- 209 (266)
.+++||++||++++++.++|+.++++++.++++++.+++++.|++ +.. +.+.. +++.|+ ++.+++.++..
T Consensus 323 ~~~~T~~gnpl~~aaa~a~Le~i~~~~l~~~~~~~g~~l~~~L~~-l~~~~~v~~-vrG~Gl---~~~ve~~~~~~~~~~ 397 (466)
T PRK07036 323 THGFTYSGHPVACAAALKNIEIMEREGLCEHVREVGPYFEERLAS-LRELPLVGD-VRGDHL---MACVECVADKGSKAL 397 (466)
T ss_pred ccCCCCCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH-hccCCCEEE-EEeece---EEEEEEccCccccCC
Confidence 577899999999999999999999999999999999999999988 544 33444 899999 99999864211
Q ss_pred -----chHHHHHHHHHHCCceeccCCCCEEEEeccCCCCHHHHHHHHHHHHHHHHHHh
Q psy6547 210 -----LEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINTMA 262 (266)
Q Consensus 210 -----~~~~~~~~~l~~~gi~~~~~~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~~ 262 (266)
.....+...|+++|+++.+.+ +.+|++|++.+|++++++++++++++++++.
T Consensus 398 ~~~~~~~~~~~~~~~~~~Gvl~~~~~-~~~~l~Ppl~it~~~id~~~~~l~~al~~~~ 454 (466)
T PRK07036 398 LPEDIAIGQRIDRHCQERGLLVRPLE-HLCVLSPPLIITRAQIDEIVAILRAAIEETA 454 (466)
T ss_pred CCchhHHHHHHHHHHHHCCcEEeecC-CEEEEeCCCcCCHHHHHHHHHHHHHHHHHHH
Confidence 124568889999999998864 7899999999999999999999999988764
No 36
>PRK08593 4-aminobutyrate aminotransferase; Provisional
Probab=100.00 E-value=8e-37 Score=270.09 Aligned_cols=256 Identities=28% Similarity=0.536 Sum_probs=218.7
Q ss_pred ccCCc-CcccccCCCCCCceeecCCCH-----------------HHHHHHHhc---CCCEEEEEEccccCCCCcccCChH
Q psy6547 3 ITTDP-TSYNEFGPHMPGYNIIPYNDV-----------------DALEAKLKS---NPNICAFMVEPIQGEAGAVVPDDG 61 (266)
Q Consensus 3 ~~~~~-~~~~~~~~~~~~v~~~~~~d~-----------------~~l~~~l~~---~~~~~~i~~~~~~~~~g~~~~~~~ 61 (266)
+++++ ..+..|.|..++++.+|+++. +++++++++ .+++++|++||+++++|.+.++++
T Consensus 149 ~s~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iAavI~EPv~g~gG~~~~~~~ 228 (445)
T PRK08593 149 MSGISLNMRRKYGPLLPGFVHIPFPDKYRGMYEEPDANFVEEYLAPLKEMFEKYLPADEVACIVIETIQGDGGLLEPVPG 228 (445)
T ss_pred hcCCCcccccCCCCCCCCcEEeCCCccccccccCCcHHHHHHHHHHHHHHHHhhcCCCceEEEEEccccCCCCCcCCCHH
Confidence 44433 345668899999999987753 456665543 247999999999999999999999
Q ss_pred HHHHHHHHHHhcCCEEEEeccccCcCCcCcccccccCCCCcCeeeecccccCCchhhhhheecHHhhhccCCCCCCCCCC
Q psy6547 62 YLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYG 141 (266)
Q Consensus 62 ~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~~~~~~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~ 141 (266)
++++|+++|++||+++|+||+|+|||++|..+..+.+++.||++++||++++| +|+|++++++++++.+....+..|++
T Consensus 229 yl~~l~~lc~~~g~llI~DEv~tg~GrtG~~~a~~~~gv~pDi~t~gK~l~~G-~p~gav~~~~~i~~~~~~~~~~~T~~ 307 (445)
T PRK08593 229 YFEALYKFCREHGILFAVDDIQQGLGRTGKWSSISHFNITPDLMSFGKSLAGG-MPMSAIVGRKEIMESLEAPAHLFTTG 307 (445)
T ss_pred HHHHHHHHHHHcCCEEEEechhhCCCcCchHHHHHhcCCCCCEeeecccccCC-cccEEEEEcHHHHhhhccCCCCCCCC
Confidence 99999999999999999999999999999888888889999999999999999 99999999999998887656778999
Q ss_pred CcHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccc-CCCcccEEecCccceeeEEEEeeCc------cchHHH
Q psy6547 142 GNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSSPANK-SKASFKLSSGGLKKSINTLILSVSA------ILEVYD 214 (266)
Q Consensus 142 ~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~------~~~~~~ 214 (266)
++|++++++.++|+.++++++.++++++.+++++.|++.... +.+.. +++.|+ ++.+.+.... .....+
T Consensus 308 ~~pl~~aaa~a~l~~l~~~~l~~~~~~~g~~l~~~L~~l~~~~~~v~~-vrG~Gl---~~gi~l~~~~~~~~~~~~~~~~ 383 (445)
T PRK08593 308 ANPVSCAAALATIDMIEDESLLQRSAEKGEYARKRFDQWVSKYNFVGD-VRGYGL---SIGIDIVSDKKLKTRDNEAALK 383 (445)
T ss_pred CCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhcCCcEEE-Eeccce---EEEEEEecCCCcCCCcHHHHHH
Confidence 999999999999999999999999999999999999983333 34444 899999 9998885421 123567
Q ss_pred HHHHHHHCCceeccCCCCEEEEeccCCCCHHHHHHHHHHHHHHHHHHhh
Q psy6547 215 VCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINTMAA 263 (266)
Q Consensus 215 ~~~~l~~~gi~~~~~~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~~~ 263 (266)
+++.|.++||++.+.+.+.+|++|++.+|++++++++++++++++++..
T Consensus 384 ~~~~~~~~Gv~~~~~~~~~lr~~p~l~~t~~~id~~~~~l~~~l~~~~~ 432 (445)
T PRK08593 384 ICNYCFEHGVVIIAVAGNVLRFQPPLVITYEQLDTALNTIEQAFTALEA 432 (445)
T ss_pred HHHHHHHCCeEEeccCCCEEEEECCCccCHHHHHHHHHHHHHHHHHHhc
Confidence 8999999999998766789999999999999999999999999988654
No 37
>PRK06058 4-aminobutyrate aminotransferase; Provisional
Probab=100.00 E-value=8e-37 Score=270.48 Aligned_cols=246 Identities=33% Similarity=0.603 Sum_probs=209.2
Q ss_pred cccccCCCCCCceeecCC----C---------------HHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHH
Q psy6547 9 SYNEFGPHMPGYNIIPYN----D---------------VDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRAL 69 (266)
Q Consensus 9 ~~~~~~~~~~~v~~~~~~----d---------------~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l 69 (266)
....|.|+.+++..++++ + ++.+++.+. .+++++|++||+++++|.+.++++++++|+++
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~iAavi~EPi~g~gG~~~p~~~yl~~lr~l 248 (443)
T PRK06058 170 YKSGFGPFAPEVYRAPMSYPYRDPKGLATDGEEAAARAITVIEKQVG-ADNLAAVIIEPIQGEGGFIVPAEGFLPALLEW 248 (443)
T ss_pred cccccCCCCCCceEcCCCcccccccccccchHHHHHHHHHHHHHhhC-CCceEEEEECCccCCCCCcCCCHHHHHHHHHH
Confidence 456677777887776532 2 122333331 24799999999999999998999999999999
Q ss_pred HHhcCCEEEEeccccCcCCcCcccccccCCCCcCeeeecccccCCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHH
Q psy6547 70 CSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKL 149 (266)
Q Consensus 70 ~~~~g~~li~De~~~~~~~~g~~~~~~~~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 149 (266)
|++||+++|+||+++||+|+|..|+++.+++.||+++++|++++| +|+|++++++++++.+....+.+||++||+++++
T Consensus 249 c~~~gillI~DEV~tGfgRtG~~fa~~~~gv~PDiv~~gK~l~~G-~Pi~av~~~~~i~~~~~~~~~~~T~~gnpl~~aa 327 (443)
T PRK06058 249 CRENGVVFIADEVQTGFARTGAWFACEHEGIVPDLITTAKGIAGG-LPLSAVTGRAEIMDAPHPGGLGGTYGGNPVACAA 327 (443)
T ss_pred HHHcCCEEEEeccccCCCcChhhhHHHhcCCCCCEEEEcccccCC-CccEEEEEcHHHHhhccCCCCCCCCCCCHHHHHH
Confidence 999999999999999999999988888899999999999999999 9999999999999988877789999999999999
Q ss_pred HHHHHHHHhhccHHHHHHHHHHHHHHHhhccccc-CCCcccEEecCccceeeEEEEeeCc-----cchHHHHHHHHHHCC
Q psy6547 150 AMTALDVILEENMIENAYKMGEIFRSELSSPANK-SKASFKLSSGGLKKSINTLILSVSA-----ILEVYDVCIKMKDAG 223 (266)
Q Consensus 150 ~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~-----~~~~~~~~~~l~~~g 223 (266)
+.++|+.++++++.+++++++++++++|++.... ..+.. +++.|. |+.+++.... ......+.+.|.++|
T Consensus 328 a~a~L~~~~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~-vrg~G~---~~~i~~~~~~~~~~~~~~~~~l~~~~~~~G 403 (443)
T PRK06058 328 ALAAIETIEEDDLVARARQIEALMTDRLRALAAEDDRIGD-VRGRGA---MIAIELVKPGTTEPDAELTKALAAAAHAAG 403 (443)
T ss_pred HHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhCCcEEe-eeccce---EEEEEEecCCCCCCcHHHHHHHHHHHHHCC
Confidence 9999999999999999999999999999983333 33444 899999 9999885421 112566888889999
Q ss_pred ceeccCC--CCEEEEeccCCCCHHHHHHHHHHHHHHHHH
Q psy6547 224 LVTKPIS--NNIIRLSPALNITEQELREGLDIIINTINT 260 (266)
Q Consensus 224 i~~~~~~--~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~ 260 (266)
|++.+.+ ++++|+.|++.+|++++++++++|++++++
T Consensus 404 v~~~~~~~~~~~lr~~Ppl~~t~~~i~~~~~~l~~~l~~ 442 (443)
T PRK06058 404 VIVLTCGTYGNVIRLLPPLVIGDELLREGLDVLEAALAD 442 (443)
T ss_pred eEEeccCCCCCEEEEECCCccCHHHHHHHHHHHHHHHHh
Confidence 9998754 479999999999999999999999999875
No 38
>PRK06082 4-aminobutyrate aminotransferase; Provisional
Probab=100.00 E-value=1.2e-36 Score=269.56 Aligned_cols=256 Identities=30% Similarity=0.471 Sum_probs=216.1
Q ss_pred CccCCcCcccccCCCCCCceeecCC--------C--------HHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHH
Q psy6547 2 LITTDPTSYNEFGPHMPGYNIIPYN--------D--------VDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKK 65 (266)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~v~~~~~~--------d--------~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~ 65 (266)
++++++..+..|.|+.+++..++++ + ++++++.+++.+++++|++||+++. |.++++++++++
T Consensus 175 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~vAavIvEPv~g~-g~~~~~~~yl~~ 253 (459)
T PRK06082 175 SVGGEACFRQGMGPLMAGVERIPPAVSYRGAFPDADGSDVHYADYLEYVIEKEGGIGAFIAEAVRNT-DVQVPSKAYWKR 253 (459)
T ss_pred hhcCCcccccCCCCCCCCCEEeCCCcccccccCChhHHHHHHHHHHHHHHhcCCCEEEEEECCccCC-CCcCCCHHHHHH
Confidence 4566777777888999999888743 2 3568888865558999999999987 466689999999
Q ss_pred HHHHHHhcCCEEEEeccccCcCCcCcccccccCCCCcCeeeecccccCCchhhhhheecHHhhhccCCCCCCCCCCCcHH
Q psy6547 66 VRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPL 145 (266)
Q Consensus 66 l~~l~~~~g~~li~De~~~~~~~~g~~~~~~~~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (266)
|+++|++||+++|+||+++||||+|..|+++.+|+.||+++++|++++|++|+|.+++++++.+.+......+|++++|+
T Consensus 254 lr~lc~~~g~llI~DEV~tG~GRtG~~fa~e~~gv~PDiv~~gKgl~gG~~P~~av~~~~~i~~~~~~~~~~~T~~gnpl 333 (459)
T PRK06082 254 VREICDKHNVLLIIDEIPNGMGRTGEWFTHQAYGIEPDILCIGKGLGGGLVPIAAMITKDKYNTAAQISLGHYTHEKSPL 333 (459)
T ss_pred HHHHHHHcCCEEEEechhhCCCccchhhHhHhhCCCCCEEEecccccCCCCcceEEEEcHHHHhhccCCCCCCCCCcCHH
Confidence 99999999999999999999999999889999999999999999999985599999999988755432222279999999
Q ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccc-CCCcccEEecCccceeeEEEEeeCcc------chHHHHHHH
Q psy6547 146 ACKLAMTALDVILEENMIENAYKMGEIFRSELSSPANK-SKASFKLSSGGLKKSINTLILSVSAI------LEVYDVCIK 218 (266)
Q Consensus 146 ~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~------~~~~~~~~~ 218 (266)
+++++.++|+.++++++.++++++.++++++|+++... +.+.. +++.|+ ++.+++..+.. .....++..
T Consensus 334 ~~aaa~a~L~~l~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~-vrG~Gl---~~~ve~~~~~~~~~~~~~~~~~~~~~ 409 (459)
T PRK06082 334 GCAAALATIEVIEQEGLLEKVKADSQFMRERLLEMKAKYPLIGD-VRGIGL---LWGVELVTDRHTKERAYDEAEAVLYR 409 (459)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhCCCeee-eeeccc---eeEEEEccCccccCccHHHHHHHHHH
Confidence 99999999999998899999999999999999983332 33444 899999 99999864211 124568888
Q ss_pred HHHCCceeccCCCCEEEEeccCCCCHHHHHHHHHHHHHHHHHHh
Q psy6547 219 MKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINTMA 262 (266)
Q Consensus 219 l~~~gi~~~~~~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~~ 262 (266)
+.++|+++.+.+.+.+|++|++.+|+++++++++++++++.++.
T Consensus 410 ~~~~Gvl~~~~~~~~i~~~Ppl~it~~eid~~~~~l~~~l~~~~ 453 (459)
T PRK06082 410 CLNNGLSFKVSQGNVIQLSPPLIITREELTQALAILEEAIAKIC 453 (459)
T ss_pred HHhCCCEEEecCCCEEEEeCCCccCHHHHHHHHHHHHHHHHHHh
Confidence 99999999887679999999999999999999999999998763
No 39
>PRK07495 4-aminobutyrate aminotransferase; Provisional
Probab=100.00 E-value=1.6e-36 Score=266.71 Aligned_cols=250 Identities=33% Similarity=0.561 Sum_probs=216.6
Q ss_pred CcccccCCCCCCceeecCCC----------HHHHHHHHhc---CCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcC
Q psy6547 8 TSYNEFGPHMPGYNIIPYND----------VDALEAKLKS---NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYN 74 (266)
Q Consensus 8 ~~~~~~~~~~~~v~~~~~~d----------~~~l~~~l~~---~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g 74 (266)
.....|.|+.++++.+|+++ ++++++.+++ ..++++|++||+++++|.++++++++++|+++|++||
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~iaavi~EPv~g~~G~~~~~~~~l~~l~~l~~~~g 232 (425)
T PRK07495 153 PYKVGFGAMMPDVYHVPFPVELHGVSVEQSLAALDKLFKADVDPQRVAAIIIEPVQGEGGFYPAPAAFMKALRELCDQHG 232 (425)
T ss_pred ccccCCCCCCCCeEEecCCcccccccHHHHHHHHHHHHHhccCCCceEEEEECCccCCCCCccCCHHHHHHHHHHHHHcC
Confidence 45567888888999999875 5666887753 2479999999999998888899999999999999999
Q ss_pred CEEEEeccccCcCCcCcccccccCCCCcCeeeecccccCCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHHH
Q psy6547 75 VLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTAL 154 (266)
Q Consensus 75 ~~li~De~~~~~~~~g~~~~~~~~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l 154 (266)
+++|+||+|+||+++|..|+++.+++.||++++||++++| +|+|++++++++++.+....+.+||+++|++++++.+++
T Consensus 233 ~llI~DEv~tG~gr~G~~~a~~~~gv~pDi~tlsK~l~~G-~pigav~~~~~i~~~~~~~~~~~T~~~~pl~~aaa~a~l 311 (425)
T PRK07495 233 ILLIADEVQTGFARTGKLFAMEHHEVAADLTTMAKGLAGG-FPLAAVTGRAEIMDAPGPGGLGGTYGGNPLGIAAAHAVL 311 (425)
T ss_pred CEEEEechhhcCCcCCCceeecccCCCCCEEeehhhhcCC-ccceEEEEcHHHHhccCCCCcCCCCCCCHHHHHHHHHHH
Confidence 9999999999999999888888889999999999999999 999999999999998887778899999999999999999
Q ss_pred HHHhhccHHHHHHHHHHHHHHHhhccccc-CCCcccEEecCccceeeEEEEeeCcc-----chHHHHHHHHHHCCceecc
Q psy6547 155 DVILEENMIENAYKMGEIFRSELSSPANK-SKASFKLSSGGLKKSINTLILSVSAI-----LEVYDVCIKMKDAGLVTKP 228 (266)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~-----~~~~~~~~~l~~~gi~~~~ 228 (266)
+.++++++.+++++++++++++|++.... +.+.. +++.|+ |+++++.+.+. .....+.+.++++|+++.+
T Consensus 312 ~~l~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~-vrG~Gl---~~~iel~~~~~~~~~~~~~~~~~~~~~~~Gvl~~~ 387 (425)
T PRK07495 312 DVIEEEDLCERANQLGNRLKQRLASLRETVPEIAD-IRGPGF---MNAVEFNDADSGLPSAEFANRVRLKALEKGLILLT 387 (425)
T ss_pred HHHHhchHHHHHHHHHHHHHHHHHHHHhhCCCeee-eecCce---EEEEEEecCCCCCccHHHHHHHHHHHHHCCeEEee
Confidence 99998899999999999999999983332 33444 889999 99999865211 1245688889999999976
Q ss_pred CC--CCEEEEeccCCCCHHHHHHHHHHHHHHHHHHh
Q psy6547 229 IS--NNIIRLSPALNITEQELREGLDIIINTINTMA 262 (266)
Q Consensus 229 ~~--~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~~ 262 (266)
.+ ++.+||.|++.+|++++++++++|+++++++.
T Consensus 388 ~g~~~~~~r~~Ppl~it~~~id~~~~~l~~~l~~~~ 423 (425)
T PRK07495 388 CGVHGNVIRFLAPITIQDDVFAEALDILEASILEAS 423 (425)
T ss_pred cCCCCCEEEEeCCCccCHHHHHHHHHHHHHHHHHHh
Confidence 43 48999999999999999999999999998753
No 40
>PRK07480 putative aminotransferase; Validated
Probab=100.00 E-value=1.4e-36 Score=269.02 Aligned_cols=256 Identities=27% Similarity=0.443 Sum_probs=215.0
Q ss_pred CccCCcCcccccCCCCCCceeecCCC-----------------HHHHHHHHhc--CCCEEEEEEccccCCCCcccCChHH
Q psy6547 2 LITTDPTSYNEFGPHMPGYNIIPYND-----------------VDALEAKLKS--NPNICAFMVEPIQGEAGAVVPDDGY 62 (266)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~v~~~~~~d-----------------~~~l~~~l~~--~~~~~~i~~~~~~~~~g~~~~~~~~ 62 (266)
|+++++..++.+.|..+++.+++++. +++|++.+.+ .+++++|++||+++.+|.+.++.++
T Consensus 162 s~~g~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vAAvi~EPiqg~gG~~~~~~~y 241 (456)
T PRK07480 162 SLGGMKYMHEQGDLPIPGIVHIDQPYWFGEGGDMTPEEFGLAAARQLEAKILELGADNVAAFIGEPIQGAGGVIIPPATY 241 (456)
T ss_pred hccCChhhhcccCCCCCCCeecCCCcccccccCCChHHHHHHHHHHHHHHHHhcCCCcEEEEEEccccCCCCCccCCHHH
Confidence 44555555556667677788777542 3667655533 2489999999999999999999999
Q ss_pred HHHHHHHHHhcCCEEEEeccccCcCCcCcccccccCCCCcCeeeecccccCCchhhhhheecHHhhhccC--C--CCCCC
Q psy6547 63 LKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLV--P--GTHGS 138 (266)
Q Consensus 63 l~~l~~l~~~~g~~li~De~~~~~~~~g~~~~~~~~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~--~--~~~~~ 138 (266)
+++|+++|++||+++|+||+++||||+|..|+++.+|+.||+++++|+++||++|+|.+++++++++.+. . ..+.+
T Consensus 242 l~~lr~lc~~~g~llI~DEV~tGfGRtG~~~a~~~~gv~PDiv~~gK~l~gG~~Pi~av~~~~~i~~~~~~~~~~~~~~~ 321 (456)
T PRK07480 242 WPEIQRICRKYDILLVADEVICGFGRTGEWFGSQHFGIKPDLMTIAKGLTSGYIPMGAVGVGDRVAEVLIEEGGEFNHGF 321 (456)
T ss_pred HHHHHHHHHHcCCEEEEechhhCCCcCcchhhhhhcCCCCCeeeeehhhccCCccceEEEEcHHHHHHHhcCCCCcccCC
Confidence 9999999999999999999999999999999999999999999999999999569999999999988772 2 35889
Q ss_pred CCCCcHHHHHHHHHHHHHHhhccHHHHH-HHHHHHHHHHhhccccc-CCCcccEEecCccceeeEEEEeeCcc----c--
Q psy6547 139 TYGGNPLACKLAMTALDVILEENMIENA-YKMGEIFRSELSSPANK-SKASFKLSSGGLKKSINTLILSVSAI----L-- 210 (266)
Q Consensus 139 ~~~~~~~~~~a~~~~l~~~~~~~~~~~~-~~~~~~l~~~l~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~----~-- 210 (266)
||++||++++++.++|+.++++++.+++ +++.++++++|++ +.. +.+.. +++.|+ |+.+++.++.. .
T Consensus 322 T~~gnpl~~Aaa~a~L~~l~~~~l~~~~~~~~g~~l~~~l~~-l~~~~~i~~-vrG~Gl---m~gie~~~~~~~~~~~~~ 396 (456)
T PRK07480 322 TYSGHPVAAAVALANLRILRDEGIVERVRDDTGPYLQKRLRE-LADHPLVGE-VRGVGL---VGAIELVKDKATRERFEA 396 (456)
T ss_pred CCCcCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHH-hhcCCCeee-EEeecc---eEEEEEeccccccccCcc
Confidence 9999999999999999999999999999 6999999999998 544 33444 899999 99999854211 0
Q ss_pred ---hHHHHHHHHHHCCceeccCCCCEEEEeccCCCCHHHHHHHHHHHHHHHHHHhh
Q psy6547 211 ---EVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINTMAA 263 (266)
Q Consensus 211 ---~~~~~~~~l~~~gi~~~~~~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~~~ 263 (266)
....+...|+++||++.+. ++.+|++|++.+|++++|+++++|++++.++.+
T Consensus 397 ~~~~~~~~~~~~~~~Gll~~~~-~~~l~~~Ppl~it~~eid~~~~~l~~al~~~~~ 451 (456)
T PRK07480 397 GGGVGTICRDHCFANGLIMRAV-GDRMIISPPLVITHAEIDELVEKARKALDATAA 451 (456)
T ss_pred hhhHHHHHHHHHHHCCcEEeec-CCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 1246778899999999875 478999999999999999999999999988654
No 41
>PRK09264 diaminobutyrate--2-oxoglutarate aminotransferase; Validated
Probab=100.00 E-value=1e-36 Score=268.67 Aligned_cols=255 Identities=28% Similarity=0.492 Sum_probs=219.0
Q ss_pred CccCCcCcccccCCCCCCceeecCC--------CHHHHHHHHhcC----CCEEEEEEccccCCCCcccCChHHHHHHHHH
Q psy6547 2 LITTDPTSYNEFGPHMPGYNIIPYN--------DVDALEAKLKSN----PNICAFMVEPIQGEAGAVVPDDGYLKKVRAL 69 (266)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~v~~~~~~--------d~~~l~~~l~~~----~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l 69 (266)
|+++++..+..|.|..++++.+|++ |++++++++++. +++++|++||+++++|.++++++++++|+++
T Consensus 148 s~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~~l~~~~~~~~~~aavi~Epv~g~~G~~~~~~~~l~~l~~l 227 (425)
T PRK09264 148 AVTGNSHKRQGAGVPLNNVTRMPYDGYFGGDVDTLAYLEKLLEDSSSGVDLPAAVIVETVQGEGGINVASAEWLQRLAKL 227 (425)
T ss_pred HhcCCcccccCCCCCCCCeEEeCCCCccccchhHHHHHHHHHHhccCCCCceEEEEEecccCCCCCcCCCHHHHHHHHHH
Confidence 5566777777888888899999985 778899999642 3689999999999999988999999999999
Q ss_pred HHhcCCEEEEeccccCcCCcCcccccccCCCCcCeeeecccccC-CchhhhhheecHHhhhccCCCCCCCCCCCcHHHHH
Q psy6547 70 CSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSG-GLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACK 148 (266)
Q Consensus 70 ~~~~g~~li~De~~~~~~~~g~~~~~~~~~~~~d~~~~sK~~~~-g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (266)
|++||+++|+||+|+|||++|..|+++.+++.||++++||++++ | +|+|++++++++ ..+....+..|+++++++++
T Consensus 228 c~~~g~llI~DEV~tG~GrtG~~~~~~~~~v~PDi~t~~K~l~~~G-~pigav~~~~~i-~~~~~~~~~~T~~gnp~~~a 305 (425)
T PRK09264 228 CRKHDILLIVDDIQAGCGRTGTFFSFERAGITPDIVTLSKSISGYG-LPMALVLIKPEL-DVWKPGEHNGTFRGNNLAFV 305 (425)
T ss_pred HHHcCcEEEEechhhCCccccHHHHHhhcCCCCCEEEeccccCCCc-cceEEEEEchhh-hccCCCccCCCCCCCHHHHH
Confidence 99999999999999999999998888889999999999999997 8 999999999887 45555567889999999999
Q ss_pred HHHHHH-HHHhhccHHHHHHHHHHHHHHHhhccccc--CCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCce
Q psy6547 149 LAMTAL-DVILEENMIENAYKMGEIFRSELSSPANK--SKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLV 225 (266)
Q Consensus 149 a~~~~l-~~~~~~~~~~~~~~~~~~l~~~l~~~~~~--~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~ 225 (266)
++.+++ +.++++++.++++++.++++++|++ +.. +.+...+++.|. ++++.+.+ ......+++.|.++||+
T Consensus 306 aa~a~l~~~~~~~~l~~~~~~~g~~l~~~l~~-l~~~~~~~~~~vrg~Gl---~~~i~l~~--~~~~~~l~~~~~~~Gv~ 379 (425)
T PRK09264 306 TATAALEEYWSDDAFEKEVKAKGELVRERLEE-IAAKYPGLGAEVRGRGM---MQGIDFGD--GELAGKIAAEAFENGLI 379 (425)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH-HHHhCCCceecceeccc---EEEEEecC--hHHHHHHHHHHHHCCCE
Confidence 999999 6666778999999999999999988 432 222233778899 99999976 44577899999999999
Q ss_pred eccCC--CCEEEEeccCCCCHHHHHHHHHHHHHHHHHHhhc
Q psy6547 226 TKPIS--NNIIRLSPALNITEQELREGLDIIINTINTMAAK 264 (266)
Q Consensus 226 ~~~~~--~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~~~~ 264 (266)
+.+.+ .+.+|++|++.+|++++++++++|+++++++..+
T Consensus 380 ~~~~~~~~~~lr~~p~l~~t~~ei~~~~~~l~~~l~~~~~~ 420 (425)
T PRK09264 380 IETSGPEDEVVKLLPPLTIDEEELEEGLDILEEAVAEVLAE 420 (425)
T ss_pred EeccCCCCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHhc
Confidence 98753 4799999999999999999999999999886543
No 42
>TIGR00709 dat 2,4-diaminobutyrate 4-transaminases. This family consists of L-diaminobutyric acid transaminases. This general designation covers both 2.6.1.76 (diaminobutyrate-2-oxoglutarate transaminase, which uses glutamate as the amino donor in DABA biosynthesis), and 2.6.1.46 (diaminobutyrate--pyruvate transaminase, which uses alanine as the amino donor). Most members with known function are 2.6.1.76, and at least some annotations as 2.6.1.46 in current databases at time of model revision are incorrect. A distinct branch of this family contains examples of 2.6.1.76 nearly all of which are involved in ectoine biosynthesis. A related enzyme is 4-aminobutyrate aminotransferase (EC 2.6.1.19), also called GABA transaminase. These enzymes all are pyridoxal phosphate-containing class III aminotransferase.
Probab=100.00 E-value=1.3e-36 Score=268.98 Aligned_cols=256 Identities=26% Similarity=0.432 Sum_probs=216.0
Q ss_pred CccCCcCcccccCCCCCCceeecCCCH-----------------HHHHHHHhc----CCCEEEEEEccccCCCCcccCCh
Q psy6547 2 LITTDPTSYNEFGPHMPGYNIIPYNDV-----------------DALEAKLKS----NPNICAFMVEPIQGEAGAVVPDD 60 (266)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~v~~~~~~d~-----------------~~l~~~l~~----~~~~~~i~~~~~~~~~g~~~~~~ 60 (266)
++++++..+..|.|..+++..+++++. +.+++.++. ..++++|++||+++++|.+++++
T Consensus 147 s~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iaavi~Epi~g~~G~~~~~~ 226 (442)
T TIGR00709 147 AVTGNLFAKNAVGMLMPGVQFMPYPHEYRCPFGIGGEAGSNASIEYFENFIEDVESGVDKPAAVILEAIQGEGGVVAAPS 226 (442)
T ss_pred hhcCChhhhccCCCCCCCcEEeCCCccccccccCCchhHHHHHHHHHHHHHHhhccCCCceEEEEEccccCCCCCccCCH
Confidence 455666666778888888888887642 224444431 14799999999999999999999
Q ss_pred HHHHHHHHHHHhcCCEEEEeccccCcCCcCcccccccCCCCcCeeeecccccCCchhhhhheecHHhhhccCCCCCCCCC
Q psy6547 61 GYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTY 140 (266)
Q Consensus 61 ~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~~~~~~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~ 140 (266)
+++++++++|++||+++|+||+++||||+|..|+++.+++.||++++||++++| +|+|+++++++ ++.+....+.+||
T Consensus 227 ~yl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~a~~~~gv~PDiv~~gK~l~~G-~Pigav~~~~~-~~~~~~~~~~~T~ 304 (442)
T TIGR00709 227 EWLQKIREVTRKHDIKLILDEVQAGFGRSGTMFAFEHAGIEPDFVVMSKAVGGG-LPLAVLLIAPE-FDAWQPAGHTGTF 304 (442)
T ss_pred HHHHHHHHHHHHcCCEEEEeccccCCCCCCchhHHHHcCCCCcEEEEcccccCC-cccEEEEEchH-HhccCCCcCCCCC
Confidence 999999999999999999999999999999988888899999999999999999 99999999988 4565555688999
Q ss_pred CCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccc-CCCcccEEecCccceeeEEEEeeCcc----------
Q psy6547 141 GGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSSPANK-SKASFKLSSGGLKKSINTLILSVSAI---------- 209 (266)
Q Consensus 141 ~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~---------- 209 (266)
++||++++++.++|+.++++++.+++++++++++++|+++... +.+.. +++.|+ ++.+++.+...
T Consensus 305 ~gnpla~aaa~a~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~v~~-vrG~Gl---~~~ie~~~~~~~~~~~~~~~~ 380 (442)
T TIGR00709 305 RGNQLAMVTGTEALNYWKDDNLAQNAQERGERITSFLDDMIKEHPCIGN-VRGRGL---MQGIMIVDERQSKDATGAYPR 380 (442)
T ss_pred CcCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCeee-eeccce---EEEEEEccCcccccccccCCc
Confidence 9999999999999999999999999999999999999983333 44555 999999 99999864210
Q ss_pred --chHHHHHHHHHHCCceeccCC--CCEEEEeccCCCCHHHHHHHHHHHHHHHHHHhh
Q psy6547 210 --LEVYDVCIKMKDAGLVTKPIS--NNIIRLSPALNITEQELREGLDIIINTINTMAA 263 (266)
Q Consensus 210 --~~~~~~~~~l~~~gi~~~~~~--~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~~~ 263 (266)
.....++..|+++|+++.+.+ ++.+|+.|++.+|+++++++++++++++.++.+
T Consensus 381 ~~~~~~~~~~~~~~~Gvl~~~~~~~~~~l~~~Ppl~it~~ei~~~~~~l~~~l~~~~~ 438 (442)
T TIGR00709 381 DCELAAAIQGACFENGLLLETGGREGEVFRLLCPITIDQEECEEGISRFKQAVEEALA 438 (442)
T ss_pred chHHHHHHHHHHHHCCeEEeecCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 124568888999999998653 689999999999999999999999999987644
No 43
>PRK09221 beta alanine--pyruvate transaminase; Provisional
Probab=100.00 E-value=1.3e-36 Score=268.63 Aligned_cols=255 Identities=30% Similarity=0.529 Sum_probs=219.9
Q ss_pred CCccCCcCcccccCCCCCCceeecCCC------------------HHHHHHHHhcC--CCEEEEEEccccCCCCcccCCh
Q psy6547 1 MLITTDPTSYNEFGPHMPGYNIIPYND------------------VDALEAKLKSN--PNICAFMVEPIQGEAGAVVPDD 60 (266)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~v~~~~~~d------------------~~~l~~~l~~~--~~~~~i~~~~~~~~~g~~~~~~ 60 (266)
+|+++++..+..|.|..+++..+|++. ++++++++++. +++++|++||+++++|.+.+++
T Consensus 159 ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~iAavi~Epv~g~~G~~~~~~ 238 (445)
T PRK09221 159 ISVGGIVNNRKMFGGLLPGVDHLPHTLDLPENAFSKGQPEHGAELADDLERLVALHDASTIAAVIVEPMAGSAGVLVPPK 238 (445)
T ss_pred hccCCChhhhhccCCCCCCCeEeCCCccccccccCCChHHHHHHHHHHHHHHHHhcCCCcEEEEEEecccCCCCcccCCH
Confidence 356667777778888888888887753 36888888643 4799999999999999999999
Q ss_pred HHHHHHHHHHHhcCCEEEEeccccCcCCcCcccccccCCCCcCeeeecccccCCchhhhhheecHHhhhccCC-------
Q psy6547 61 GYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVP------- 133 (266)
Q Consensus 61 ~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~~~~~~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~------- 133 (266)
+++++|+++|++||+++|+||+++|||++|..|.++.+++.||++++||++++|++|+|.+++++++++.+..
T Consensus 239 ~yl~~l~~lc~~~g~llI~DEV~tG~GRtG~~~~~~~~gv~PDi~~~gK~l~gG~~Pi~av~~~~~i~~~~~~~~~~~~~ 318 (445)
T PRK09221 239 GYLQRLREICDKHGILLIFDEVITGFGRLGAAFAAERFGVTPDIITFAKGLTNGAIPMGAVIASDEIYDAFMQGPEYAIE 318 (445)
T ss_pred HHHHHHHHHHHHcCCEEEEeehhhCCCcCchhhHHHhcCCCCCEEEeccccccCcccceeeEEcHHHHHhhccCcccccc
Confidence 9999999999999999999999999999999888889999999999999999886799999999999887642
Q ss_pred CCCCCCCCCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccc-CCCcccEEecCccceeeEEEEeeCc---c
Q psy6547 134 GTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSSPANK-SKASFKLSSGGLKKSINTLILSVSA---I 209 (266)
Q Consensus 134 ~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~---~ 209 (266)
..+.+||+++|++++++.++|+.++.+++.++++++.+++++.|++ +.. +.+.. +++.|+ +..+.+.... .
T Consensus 319 ~~~~~T~~~~pl~~aaa~a~L~~i~~~~l~~~~~~~g~~l~~~l~~-l~~~~~v~~-vrg~Gl---~~~v~~~~~~~~~~ 393 (445)
T PRK09221 319 FFHGYTYSAHPVACAAGLATLDIYREEDLFERAAELAPYFEDAVHS-LKGLPHVID-IRNIGL---VAGIELAPRPGAPG 393 (445)
T ss_pred cccccCCCcCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHh-hccCCCEEE-EecCce---EEEEEEeccccccc
Confidence 2467899999999999999999999889999999999999999998 533 44555 889999 9888876421 1
Q ss_pred chHHHHHHHHHHCCceeccCCCCEEEEeccCCCCHHHHHHHHHHHHHHHHHH
Q psy6547 210 LEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINTM 261 (266)
Q Consensus 210 ~~~~~~~~~l~~~gi~~~~~~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~ 261 (266)
..+..+++.|+++||++.+. ++.+||+|++.+|++++++++++|++++.++
T Consensus 394 ~~~~~~~~~~~~~Gv~~~~~-~~~lr~~Ppl~~t~~eid~~~~~l~~~l~~~ 444 (445)
T PRK09221 394 ARGYEAFMKCFEKGLLVRYT-GDTIALSPPLIIEKAQIDELVDALGDALRAV 444 (445)
T ss_pred chHHHHHHHHHHCCeEEeec-CCEEEEECCccCCHHHHHHHHHHHHHHHHhh
Confidence 23567889999999999876 5799999999999999999999999999764
No 44
>PRK08117 4-aminobutyrate aminotransferase; Provisional
Probab=100.00 E-value=1.9e-36 Score=267.92 Aligned_cols=251 Identities=33% Similarity=0.564 Sum_probs=216.4
Q ss_pred cCcccccCCCCCCceeecCC-----------------CHHHHHHHHhc---CCCEEEEEEccccCCCCcccCChHHHHHH
Q psy6547 7 PTSYNEFGPHMPGYNIIPYN-----------------DVDALEAKLKS---NPNICAFMVEPIQGEAGAVVPDDGYLKKV 66 (266)
Q Consensus 7 ~~~~~~~~~~~~~v~~~~~~-----------------d~~~l~~~l~~---~~~~~~i~~~~~~~~~g~~~~~~~~l~~l 66 (266)
+...+.|.|+.+++..+|++ +++++++++++ .+++++|++||+++++|.+.++++++++|
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~aavi~Epi~~~~G~~~~~~~~l~~l 233 (433)
T PRK08117 154 SKYRKYYQPLLGSVYQAPYPYCDRCPKGEDPEVCFLECLRDLESLFKHQVTPEEVAAVIIEPVLGEGGYIVPPKSFLKKL 233 (433)
T ss_pred ccccccCCCCCCCcEEeCCCccccccccCchhHHHHHHHHHHHHHHHhccCCCcEEEEEECCeeCCCCCccCCHHHHHHH
Confidence 45556678888888888875 45678888754 24799999999999999999999999999
Q ss_pred HHHHHhcCCEEEEeccccCcCCcCcccccccCCCCcCeeeecccccCCchhhhhheecHHhhhccCCCCCCCCCCCcHHH
Q psy6547 67 RALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLA 146 (266)
Q Consensus 67 ~~l~~~~g~~li~De~~~~~~~~g~~~~~~~~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (266)
+++|++||+++|+||+|+||+++|..++.+.+++.||++++||++++| +|+|++++++++++.+....+..|++++|++
T Consensus 234 ~~lc~~~g~llI~DEv~tG~gr~G~~~~~~~~gv~pDi~t~sK~lg~G-~pigav~~~~~i~~~~~~~~~~~T~~~np~~ 312 (433)
T PRK08117 234 REICDRHGILLIFDEVQTGFGRTGEWFAAQTFGVVPDIMTIAKGIASG-LPLSAVVASKELMEQWPLGSHGTTFGGNPVA 312 (433)
T ss_pred HHHHHHcCCEEEEecchhccCccccchhHhhcCCCCCEeehhhhccCC-CcceeEEEcHHHHhhccCCCCCCCCCcCHHH
Confidence 999999999999999999999999887777889999999999999999 9999999999999888766788999999999
Q ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccc--CCCcccEEecCccceeeEEEEeeCc----cchHHHHHHHHH
Q psy6547 147 CKLAMTALDVILEENMIENAYKMGEIFRSELSSPANK--SKASFKLSSGGLKKSINTLILSVSA----ILEVYDVCIKMK 220 (266)
Q Consensus 147 ~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~--~~~~~~~~~~g~~~~~~~~~~~~~~----~~~~~~~~~~l~ 220 (266)
++++.++|+.++.+++.+++++++++++++|++ +.. ..+.. +++.|. ++++++.+.+ ......+.+.|.
T Consensus 313 ~aaa~a~L~~l~~~~l~~~~~~~g~~l~~~L~~-l~~~~~~~~~-vrg~Gl---~~gi~~~~~~~~~~~~~~~~~~~~l~ 387 (433)
T PRK08117 313 CAAALATLEVIKEEKLLDNANEMGAYALERLEV-LKEKHPVIGD-VRGIGL---MIGIEIVDPDGEPDGDAVEKILDKCL 387 (433)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH-HHhcCCceee-eecCCc---EEEEEEecCCCCcchHHHHHHHHHHH
Confidence 999999999998888999999999999999998 542 33344 889999 9999986421 223567889999
Q ss_pred HCCceeccCC--CCEEEEeccCCCCHHHHHHHHHHHHHHHHHHhh
Q psy6547 221 DAGLVTKPIS--NNIIRLSPALNITEQELREGLDIIINTINTMAA 263 (266)
Q Consensus 221 ~~gi~~~~~~--~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~~~ 263 (266)
++||++.+.+ .+++|++|++.+|++++++++++|.++++++.+
T Consensus 388 ~~Gv~~~~~g~~~~~lRl~p~~~~t~~~i~~~~~~l~~~l~~~~~ 432 (433)
T PRK08117 388 EKGLLFYLCGNAGNVLRMIPPLTVTKEEIDEGLDILDEALTEYEA 432 (433)
T ss_pred HCCCEEeecCCCCCEEEEeCCccCCHHHHHHHHHHHHHHHHHHhc
Confidence 9999987643 479999999999999999999999999987643
No 45
>PRK06062 hypothetical protein; Provisional
Probab=100.00 E-value=1.9e-36 Score=268.01 Aligned_cols=230 Identities=32% Similarity=0.547 Sum_probs=200.3
Q ss_pred HHHHHHHHhcC--CCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCcccccccCCCCcCee
Q psy6547 28 VDALEAKLKSN--PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIV 105 (266)
Q Consensus 28 ~~~l~~~l~~~--~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~~~~~~~~~~d~~ 105 (266)
+++++++++.. +++++|++||+++++|.+.++++++++|+++|++||+++|+||+++||||+|..|+++.+|+.||++
T Consensus 200 ~~~le~~l~~~~~~~iAaviiEPv~g~gG~~~p~~~yl~~lr~lc~~~g~lLI~DEV~tGfGRtG~~~a~~~~gv~PDi~ 279 (451)
T PRK06062 200 LAHLERVIELEGPSTIAAILLESVPGTAGILVPPPGYLAGVRELCDRHGIVLIADEVMAGFGRTGKWFAIEHFGVVPDLI 279 (451)
T ss_pred HHHHHHHHHhcCCCceEEEEEccccCCCCcccCCHHHHHHHHHHHHHcCCEEEeeccccCCCcCcHHHHHHhcCCCCCee
Confidence 67788888642 4799999999999999999999999999999999999999999999999999988999999999999
Q ss_pred eecccccCCchhhhhheecHHhhhccCCC--CCCCCCCCcHHHHHHHHHHHHHHhhccHHHHHHHHH-HHHHHHhhcccc
Q psy6547 106 ILGKALSGGLYPISAVLADDEVMGTLVPG--THGSTYGGNPLACKLAMTALDVILEENMIENAYKMG-EIFRSELSSPAN 182 (266)
Q Consensus 106 ~~sK~~~~g~~~~g~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~-~~l~~~l~~~~~ 182 (266)
+++|++++|++|+|.+++++++++.+... .+.+||+++|++++++.++|+.++++++.+++++.+ +++++.|+++..
T Consensus 280 t~gK~lggG~~Pigav~~~~~i~~~~~~~~~~~~~T~~gnpl~~Aaa~a~L~~l~~~~l~~~~~~~G~~~l~~~L~~l~~ 359 (451)
T PRK06062 280 TFAKGVNSGYVPLGGVAISEAIAATFADRPYPGGLTYSGHPLACAAAVATINAMEEEGIVENAARIGAEVLGPGLRELAE 359 (451)
T ss_pred eechhhhcCCcCcEEEEEcHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999955999999999999887643 577899999999999999999999999999999998 689999988333
Q ss_pred c-CCCcccEEecCccceeeEEEEeeCcc-------c-----hHHHHHHHHHHCCceeccCCCCEEEEeccCCCCHHHHHH
Q psy6547 183 K-SKASFKLSSGGLKKSINTLILSVSAI-------L-----EVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELRE 249 (266)
Q Consensus 183 ~-~~~~~~~~~~g~~~~~~~~~~~~~~~-------~-----~~~~~~~~l~~~gi~~~~~~~~~iR~~~~~~~t~~~i~~ 249 (266)
. +.+.. +++.|+ |+.+.+..+.. . ....+++.|+++||++.+. .+.+|++|++.+|+++|++
T Consensus 360 ~~~~v~~-vrG~Gl---~~gve~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gvl~~~~-~~~lrl~ppl~~t~~eid~ 434 (451)
T PRK06062 360 RHPSVGE-VRGLGV---FWALELVADRETREPLAPYGASSAAMAAVKAACKERGLLPFVN-GNRIHVVPPCTVTEDEVRE 434 (451)
T ss_pred cCCcEEe-Eecccc---EEEEEEcccccccCCCcccchhhHHHHHHHHHHHHCCcEEeec-CCEEEEECCccCCHHHHHH
Confidence 3 33444 899999 99999853210 0 2457889999999998875 5789999999999999999
Q ss_pred HHHHHHHHHHHHh
Q psy6547 250 GLDIIINTINTMA 262 (266)
Q Consensus 250 ~~~~l~~~~~~~~ 262 (266)
++++++++++++.
T Consensus 435 ~~~~l~~~l~~~~ 447 (451)
T PRK06062 435 GLAILDAALAVAD 447 (451)
T ss_pred HHHHHHHHHHHhh
Confidence 9999999998753
No 46
>PTZ00125 ornithine aminotransferase-like protein; Provisional
Probab=100.00 E-value=2.7e-36 Score=265.11 Aligned_cols=252 Identities=55% Similarity=0.974 Sum_probs=215.8
Q ss_pred cccccCCCCCCceeecCCCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCC
Q psy6547 9 SYNEFGPHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGR 88 (266)
Q Consensus 9 ~~~~~~~~~~~v~~~~~~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~ 88 (266)
....+.|..++++.++++|+++|++.++ .+++++|++||++|++|.+..+.+++++|+++|++||+++|+||+|+++++
T Consensus 148 ~~~~~~~~~~~~~~~~~~d~~~le~~l~-~~~~~~v~~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~lli~Dev~~g~g~ 226 (400)
T PTZ00125 148 CYNNFGPFVPGFELVDYNDVEALEKLLQ-DPNVAAFIVEPIQGEAGVIVPDDGYLKQVYELCKKYNVLLIVDEIQTGLGR 226 (400)
T ss_pred hhccCCCCCCCceEeCCCCHHHHHHHhC-CCCeEEEEEcCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCc
Confidence 3345667777899999999999999995 347999999999999999877889999999999999999999999999998
Q ss_pred cCcccccccCCCCcCeeeecccccCCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHhhccHHHHHHH
Q psy6547 89 TGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYK 168 (266)
Q Consensus 89 ~g~~~~~~~~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~ 168 (266)
.|..+....+++.||++++||++++|++|+|++++++++.+.+....+..+++++++.++++.++|+.+.++++.+++++
T Consensus 227 ~G~~~~~~~~~~~pd~~~~sK~l~~g~~~ig~v~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~i~~~~~~~~~~~ 306 (400)
T PTZ00125 227 TGKLLAHDHEGVKPDIVLLGKALSGGLYPISAVLANDDVMLVIKPGEHGSTYGGNPLACAVAVEALEVLKEEKLAENAQR 306 (400)
T ss_pred cchhhHHHhcCCCCCEEEEcccccCCCcCcEEEEEcHHHHhhccCCCCCCCCCcCHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 88766666678899999999999988459999999999998887666778899999999999999999888889999999
Q ss_pred HHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccCCCCEEEEeccCCCCHHHHH
Q psy6547 169 MGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELR 248 (266)
Q Consensus 169 ~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~iR~~~~~~~t~~~i~ 248 (266)
+.++++++|++++.........++.|. ++++.++..+..+..+++++|+++||.+.|.+.+++|+++++.+++++++
T Consensus 307 ~~~~l~~~l~~l~~~~~~~~~~~~~g~---~~~v~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~lRi~~~~~~~~~~i~ 383 (400)
T PTZ00125 307 LGEVFRDGLKELLKKSPWVKEIRGKGL---LNAIVFDHSDGVNAWDLCLKLKENGLLAKPTHDNIIRFAPPLVITKEQLD 383 (400)
T ss_pred HHHHHHHHHHHHHhcCCCeEEEecccE---EEEEEEccCcchHHHHHHHHHHHCCeEEeecCCCEEEEECCccCCHHHHH
Confidence 999999999883333222222567788 99988864223467789999999999999987899999999999999999
Q ss_pred HHHHHHHHHHHHHhhc
Q psy6547 249 EGLDIIINTINTMAAK 264 (266)
Q Consensus 249 ~~~~~l~~~~~~~~~~ 264 (266)
+++++|.++++++...
T Consensus 384 ~~l~~l~~~l~~~~~~ 399 (400)
T PTZ00125 384 QALEIIKKVLKSFDSN 399 (400)
T ss_pred HHHHHHHHHHHHHhcC
Confidence 9999999999887543
No 47
>PRK06541 hypothetical protein; Provisional
Probab=100.00 E-value=3e-36 Score=267.08 Aligned_cols=257 Identities=25% Similarity=0.460 Sum_probs=217.4
Q ss_pred CCccCCcCcccccCCCCCCceeecCCC------------------HHHHHHHHhc--CCCEEEEEEccccCCCCcccCCh
Q psy6547 1 MLITTDPTSYNEFGPHMPGYNIIPYND------------------VDALEAKLKS--NPNICAFMVEPIQGEAGAVVPDD 60 (266)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~v~~~~~~d------------------~~~l~~~l~~--~~~~~~i~~~~~~~~~g~~~~~~ 60 (266)
+|+++++..++.|.|..+++..+|+++ ++.+++++++ .+++++|++||+++++|.+.+++
T Consensus 162 ~s~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~Aavi~EPv~g~~G~~~~~~ 241 (460)
T PRK06541 162 LAITGLPAFKAPFEPLVPGGFRVPNTNFYRAPELGDDPEAFGRWAADRIEEAIEFEGPDTVAAVFLEPVQNAGGCFPPPP 241 (460)
T ss_pred hcCcCChhhccccCCCCCCcEEeCCCccccccccCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCccCCCCCccCCH
Confidence 356667777777899999999888553 3678888864 24799999999999999998899
Q ss_pred HHHHHHHHHHHhcCCEEEEeccccCcCCcCcccccccCCCCcCeeeecccccCCchhhhhheecHHhhhccCC----CCC
Q psy6547 61 GYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVP----GTH 136 (266)
Q Consensus 61 ~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~~~~~~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~----~~~ 136 (266)
+++++|+++|++||+++|+||+|+|||++|..|+.+.+++.||++++||++++|++|+|++++++++++.+.. ..+
T Consensus 242 ~yl~~l~~lc~~~g~llI~DEV~tGfGR~G~~~a~~~~gv~PDivt~gK~l~~G~~pigav~~~~~i~~~~~~~~~~~~~ 321 (460)
T PRK06541 242 GYFERVREICDRYDVLLVSDEVICAFGRLGEMFGCERFGYVPDIITCAKGITSGYSPLGAMIASDRLFEPFLDGPTMFLH 321 (460)
T ss_pred HHHHHHHHHHHHcCCEEEEechhhCCCcCchhhhhhhcCCCCCEEEecccccCCccceeEEEEcHHHHHHhhcCCCcccc
Confidence 9999999999999999999999999999999888888999999999999999994499999999999877642 246
Q ss_pred CCCCCCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCcc----c--
Q psy6547 137 GSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAI----L-- 210 (266)
Q Consensus 137 ~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~----~-- 210 (266)
.+|++++|++++++.++|+.++.+++.+++++++++++++|+++...+.+.. +++.|. |+.+++..+.. .
T Consensus 322 ~~T~~gnp~~~aaala~l~~l~~~~~~~~~~~~g~~l~~~L~~l~~~~~v~~-vrg~Gl---~~~ie~~~~~~~~~~~~~ 397 (460)
T PRK06541 322 GYTFGGHPVSAAVALANLDIFEREGLLDHVRDNEPAFRATLEKLLDLPIVGD-VRGDGY---FYGIELVKDKATKETFTD 397 (460)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHhhcCCCeEE-EEecce---EEEEEEecCcccccCCcc
Confidence 6799999999999999999999889999999999999999998323233444 889999 99999854210 0
Q ss_pred ------hHHHHHHHHHHCCceeccC--CCCEEEEeccCCCCHHHHHHHHHHHHHHHHHH
Q psy6547 211 ------EVYDVCIKMKDAGLVTKPI--SNNIIRLSPALNITEQELREGLDIIINTINTM 261 (266)
Q Consensus 211 ------~~~~~~~~l~~~gi~~~~~--~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~ 261 (266)
....+++.|+++||++.+. +.+.+|++|++.+|++++++++++|++++.++
T Consensus 398 ~~~~~~~~~~~~~~l~~~Gi~~~~~~~g~~~lrl~Ppl~~t~~~id~~~~~l~~~l~~~ 456 (460)
T PRK06541 398 DESERLLRGFLSPALFEAGLYCRADDRGDPVVQLAPPLISGQEEFDEIEQILRSVLTEA 456 (460)
T ss_pred hhhhhhHHHHHHHHHHhCCeEEEecCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHH
Confidence 1135778899999999874 45799999999999999999999999999764
No 48
>TIGR01885 Orn_aminotrans ornithine aminotransferase. This model describes the final step in the biosynthesis of ornithine from glutamate via the non-acetylated pathway. Ornithine amino transferase takes L-glutamate 5-semialdehyde and makes it into ornithine, which is used in the urea cycle, as well as in the biosynthesis of arginine. This model includes low-GC bacteria and eukaryotic species. The genes from two species are annotated as putative acetylornithine aminotransferases - one from Porphyromonas gingivalis, and the other from Staphylococcus aureus. After homology searching using BLAST it was determined that these two sequences were most closely related to ornithine aminotransferases. This model's seed includes one characterized hit, from Bacillus subtilis.
Probab=100.00 E-value=2.2e-36 Score=265.46 Aligned_cols=251 Identities=59% Similarity=1.021 Sum_probs=216.3
Q ss_pred ccCCcCcccccCCCCCCceeecCCCHHHHHHHHhcC-CCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEec
Q psy6547 3 ITTDPTSYNEFGPHMPGYNIIPYNDVDALEAKLKSN-PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADE 81 (266)
Q Consensus 3 ~~~~~~~~~~~~~~~~~v~~~~~~d~~~l~~~l~~~-~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De 81 (266)
.++++.....|.|..++++.++|+|+++|++++++. +++++|++||+++++|.+.++.+++++|+++|++||+++|+||
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~avi~E~v~~~~G~~~~~~~~l~~l~~l~~~~~~lli~DE 227 (401)
T TIGR01885 148 MSTDPDSRTNFGPYVPGFKKIPYNNLEALEEALEDHGPNVCAFIVEPIQGEAGVVVPDDGYLKKVRELCTKHNVLLIADE 227 (401)
T ss_pred CcCCcccccccCCCCCCceEeCCCCHHHHHHHHHhcCCCEEEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEec
Confidence 344555555677777889999999999999999653 4789999999999999998788899999999999999999999
Q ss_pred cccCcCCcCcccccccCCCCcCeeeecccccCCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHhhcc
Q psy6547 82 VQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEEN 161 (266)
Q Consensus 82 ~~~~~~~~g~~~~~~~~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~ 161 (266)
+|+|++++|..+..+..++.||++++||++++|++|+|++++++++++.+....+..+++++++.++++.++|+.++.++
T Consensus 228 v~~g~g~~G~~~~~~~~~~~~di~~~gK~l~~g~~~ig~v~~~~~i~~~~~~~~~~~t~~~~p~~~~aa~a~L~~i~~~~ 307 (401)
T TIGR01885 228 IQTGLGRTGKLLCVDHENVKPDIVLLGKALSGGVYPVSAVLADDDVMLTIKPGEHGSTYGGNPLACAVAVAALEVLEEEK 307 (401)
T ss_pred hhhCCCccchhhHHhhcCCCCCEEEeeccccCCCCCcEEEEEcHHHHhhccCCCCCCCCCCCHHHHHHHHHHHHHHHhcc
Confidence 99999999987766667889999999999996658999999999999888765667788999999999999999998878
Q ss_pred HHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCc-cchHHHHHHHHHHCCceeccCCCCEEEEeccC
Q psy6547 162 MIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSA-ILEVYDVCIKMKDAGLVTKPISNNIIRLSPAL 240 (266)
Q Consensus 162 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~l~~~gi~~~~~~~~~iR~~~~~ 240 (266)
+.++++++++++++.|++ ++...+.. .++.|. |+.+.++... +.++.+++++|.++||++.+.+.+.+|++|++
T Consensus 308 l~~~~~~~~~~~~~~L~~-l~~~~~~~-~~g~g~---~~~i~~~~~~~~~~~~~l~~~l~~~Gv~v~~~~~~~lRi~p~l 382 (401)
T TIGR01885 308 LAENAEKLGEIFRDQLKK-LPKPIITE-VRGRGL---LNAIVIDESKTGRTAWDLCLKLKEKGLLAKPTHGNIIRLAPPL 382 (401)
T ss_pred HHHHHHHHHHHHHHHHHh-ccCCceeE-EeecCe---eEEEEeccCcchhHHHHHHHHHHhCCEEEEecCCCEEEEeCCc
Confidence 889999999999999998 65433343 678888 8888876521 13578899999999999999878999999999
Q ss_pred CCCHHHHHHHHHHHHHHH
Q psy6547 241 NITEQELREGLDIIINTI 258 (266)
Q Consensus 241 ~~t~~~i~~~~~~l~~~~ 258 (266)
.+|++++++++++|++++
T Consensus 383 ~~t~~~i~~~l~~l~~~l 400 (401)
T TIGR01885 383 VITEEQLDEGLEIIKKVI 400 (401)
T ss_pred cCCHHHHHHHHHHHHHHh
Confidence 999999999999999876
No 49
>PRK09792 4-aminobutyrate transaminase; Provisional
Probab=100.00 E-value=1.6e-36 Score=266.96 Aligned_cols=247 Identities=29% Similarity=0.506 Sum_probs=215.2
Q ss_pred CcccccCCCCCCceeecCCC----------HHHHHHHHhc---CCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcC
Q psy6547 8 TSYNEFGPHMPGYNIIPYND----------VDALEAKLKS---NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYN 74 (266)
Q Consensus 8 ~~~~~~~~~~~~v~~~~~~d----------~~~l~~~l~~---~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g 74 (266)
..+..|.|+.++++.+|+++ ++++++++++ .+++++|++||+++++|...++++++++|+++|++||
T Consensus 153 ~~~~~~~~~~~~~~~v~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~iaavi~EPvq~~~G~~~~~~~~l~~l~~lc~~~g 232 (421)
T PRK09792 153 PYKIGFGPFPGSVYHVPYPSDLHGISTQDSLDAIERLFKSDIEAKQVAAIIFEPVQGEGGFNVAPKELVAAIRRLCDEHG 232 (421)
T ss_pred ccccCCCCCCCCcEEcCCCcccccccHHHHHHHHHHHHHhccCCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcC
Confidence 45667888888888888753 5788988863 3479999999999999988789999999999999999
Q ss_pred CEEEEeccccCcCCcCcccccccCCCCcCeeeecccccCCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHHH
Q psy6547 75 VLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTAL 154 (266)
Q Consensus 75 ~~li~De~~~~~~~~g~~~~~~~~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l 154 (266)
+++|+||+++||+++|..++++.+++.||++++||++++| +|+|++++++++++.+....+.+|++++|++++++.+++
T Consensus 233 ~llI~DEv~tg~gr~G~~~a~~~~~~~pDi~t~gK~l~~G-~pigav~~~~~i~~~~~~~~~~~T~~gnpl~~aaa~a~l 311 (421)
T PRK09792 233 IVMIADEVQSGFARTGKLFAMDHYADKPDLMTMAKSLAGG-MPLSGVVGNANIMDAPAPGGLGGTYAGNPLAVAAAHAVL 311 (421)
T ss_pred CEEEEeccccCCCCCCchhHHHhcCCCCcEEEeehhhcCC-CceEEEEEcHHHHhccCCCCcCCCCCCCHHHHHHHHHHH
Confidence 9999999999999999888888888999999999999999 999999999999998887778999999999999999999
Q ss_pred HHHhhccHHHHHHHHHHHHHHHhhccccc-CCCcccEEecCccceeeEEEEeeCc-----cchHHHHHHHHHHCCceecc
Q psy6547 155 DVILEENMIENAYKMGEIFRSELSSPANK-SKASFKLSSGGLKKSINTLILSVSA-----ILEVYDVCIKMKDAGLVTKP 228 (266)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~-----~~~~~~~~~~l~~~gi~~~~ 228 (266)
+.++++++.++++++.+++++.|+.+... +.+.. +++.|+ ++++++.+.+ ......+++.+.++||++.+
T Consensus 312 ~~l~~~~~~~~~~~~g~~l~~~l~~l~~~~p~v~~-vrG~Gl---~~~ie~~~~~~~~~~~~~~~~l~~~~~~~Gv~i~~ 387 (421)
T PRK09792 312 NIIDKESLCERANQLGQRLKNTLIDAKESVPAIAA-VRGLGS---MIAAEFNDPQTGEPSAAIAQKIQQRALAQGLLLLT 387 (421)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHhCCCcce-ecccce---EEEEEecCCccCCcchHHHHHHHHHHHHCCcEEee
Confidence 99998889999999999999999883232 33444 889999 9999997521 13467789999999999975
Q ss_pred CC--CCEEEEeccCCCCHHHHHHHHHHHHHHHH
Q psy6547 229 IS--NNIIRLSPALNITEQELREGLDIIINTIN 259 (266)
Q Consensus 229 ~~--~~~iR~~~~~~~t~~~i~~~~~~l~~~~~ 259 (266)
.+ ++.+|+.|++.++++++++++++|++++.
T Consensus 388 ~g~~~~~irl~P~l~i~~~ei~~~~~~l~~~l~ 420 (421)
T PRK09792 388 CGAYGNVIRFLYPLTIPDAQFDAAMKILQDALS 420 (421)
T ss_pred cCCCCCEEEEeCCCcCCHHHHHHHHHHHHHHHh
Confidence 33 58999999999999999999999999875
No 50
>PRK06777 4-aminobutyrate aminotransferase; Provisional
Probab=100.00 E-value=3.2e-36 Score=265.06 Aligned_cols=252 Identities=32% Similarity=0.519 Sum_probs=214.2
Q ss_pred ccCC-cCcccccCCCCCCceeecCCC----------HHHHHHHHhc---CCCEEEEEEccccCCCCcccCChHHHHHHHH
Q psy6547 3 ITTD-PTSYNEFGPHMPGYNIIPYND----------VDALEAKLKS---NPNICAFMVEPIQGEAGAVVPDDGYLKKVRA 68 (266)
Q Consensus 3 ~~~~-~~~~~~~~~~~~~v~~~~~~d----------~~~l~~~l~~---~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~ 68 (266)
++++ +.....|.|+.+++..+++++ ++++++.+++ .+++++|++||+++++|..+++++++++|++
T Consensus 147 ~t~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~iaavi~Epv~~~~G~~~~~~~~l~~l~~ 226 (421)
T PRK06777 147 LTGKVAPYKVGFGPFPGSIFHALYPNELHGVSVEEALSSVERLFKADIAPDQVAAILLEPIQGEGGFNVAPPEFMSALRT 226 (421)
T ss_pred hcCCCcccccCCCCCCCCcEEcCCCccccCcCHHHHHHHHHHHHHhccCCCceEEEEECCccCCCCCccCCHHHHHHHHH
Confidence 3443 235566788888899888875 6678888853 2479999999999999988899999999999
Q ss_pred HHHhcCCEEEEeccccCcCCcCcccccccCCCCcCeeeecccccCCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHH
Q psy6547 69 LCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACK 148 (266)
Q Consensus 69 l~~~~g~~li~De~~~~~~~~g~~~~~~~~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (266)
+|++||+++|+||+|+||+++|..+++..+++.||++++||++++| +|+|++++++++++.+....+..|+++++++++
T Consensus 227 lc~~~g~llI~DEv~tg~gr~g~~~~~~~~~~~pDiv~~sK~l~~G-~pigav~~~~~i~~~~~~~~~~~T~~~~p~~~a 305 (421)
T PRK06777 227 LCDEHGILLIADEVQTGFARTGKLFAMEYYDVKPDLITMAKSLGGG-MPISAVVGRAEVMDAPAPGGLGGTYAGNPLAVA 305 (421)
T ss_pred HHHHcCCEEEEechhhCCccCCchhhhhhcCCCCCEEeeehhhcCC-CceEEEEEcHHHHhccCCCCCCCCCCcCHHHHH
Confidence 9999999999999999999999877888889999999999999999 999999999999998887778899999999999
Q ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccc-CCCcccEEecCccceeeEEEEeeCc-c----chHHHHHHHHHHC
Q psy6547 149 LAMTALDVILEENMIENAYKMGEIFRSELSSPANK-SKASFKLSSGGLKKSINTLILSVSA-I----LEVYDVCIKMKDA 222 (266)
Q Consensus 149 a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~-~----~~~~~~~~~l~~~ 222 (266)
++.++|+.++++++.+++++++++++++|+++... +.+.. +++.|. |+.+.+.... + .-...+.++++++
T Consensus 306 aa~a~L~~~~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~-vrg~G~---~~~i~~~~~~~~~~~~~~~~~l~~~~~~~ 381 (421)
T PRK06777 306 AALAVLDVIAEEKLCQRALILGAHLVEVLEKAKASCPAIVD-IRARGS---MVAVEFNDPQTGKPSPEFTRQYQRQALEE 381 (421)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhCCCeEE-ecCceE---EEEEEEecCccCCccHHHHHHHHHHHHhC
Confidence 99999999988899999999999999999983222 33444 788999 9988775421 1 1245566777899
Q ss_pred CceeccCC--CCEEEEeccCCCCHHHHHHHHHHHHHHHH
Q psy6547 223 GLVTKPIS--NNIIRLSPALNITEQELREGLDIIINTIN 259 (266)
Q Consensus 223 gi~~~~~~--~~~iR~~~~~~~t~~~i~~~~~~l~~~~~ 259 (266)
||++.+++ ++++||+|++..+++++++++++|++++.
T Consensus 382 Gv~i~~~~~~g~~lr~~ppl~i~~~~i~~~~~~l~~~l~ 420 (421)
T PRK06777 382 GLLLLSCGVHGNVIRFLYPLTIPDAQFSKALNILTRLLA 420 (421)
T ss_pred CeEEeecCCCCCEEEEeCCCCCCHHHHHHHHHHHHHHHh
Confidence 99998864 47999999999999999999999998874
No 51
>PRK02936 argD acetylornithine aminotransferase; Provisional
Probab=100.00 E-value=2.6e-36 Score=263.17 Aligned_cols=245 Identities=35% Similarity=0.628 Sum_probs=213.5
Q ss_pred ccCCcCcccccCCCCCCceeecCCCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEecc
Q psy6547 3 ITTDPTSYNEFGPHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEV 82 (266)
Q Consensus 3 ~~~~~~~~~~~~~~~~~v~~~~~~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~ 82 (266)
+++++...+.|.|..++++.++|+|++++++.+ .+++++|++||+++++|.+..+++++++|+++|++||+++|+||+
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~--~~~~~~ii~e~i~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DEv 209 (377)
T PRK02936 132 ATGQEKIKEGFGPLLPGFTHVPFNDIKALKEVM--NEEVAAVMLEVVQGEGGVIPADPAFLQEVQTLCKKFGALLIIDEV 209 (377)
T ss_pred ccCCccccccCCCCCCCceEeCCCCHHHHHHhc--cCCeEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEEecc
Confidence 344455566688888999999999999999999 457999999999999998888999999999999999999999999
Q ss_pred ccCcCCcCcccccccCCCCcCeeeecccccCCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHhhccH
Q psy6547 83 QTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENM 162 (266)
Q Consensus 83 ~~~~~~~g~~~~~~~~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~ 162 (266)
|+||++.|.++....+++.||++++||++++| +|+||+++++++.+.+....+..++++++++++++.++|+.+..+++
T Consensus 210 ~~g~g~~g~~~~~~~~~~~~di~t~sK~l~~G-~~ig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~~~~ 288 (377)
T PRK02936 210 QTGIGRTGTLFAYEQFGLDPDIVTVAKGLGNG-IPVGAMIGKKELGTAFGPGSHGSTFGGNPLAMAAAKEVLQVIKQPSF 288 (377)
T ss_pred ccCCCcCchhhHHHhhCCCCcEEEEcccccCC-CccEEEEEcHHHHhhccCCCCCCCCCCCHHHHHHHHHHHHHHHhccH
Confidence 99999888766666678899999999999999 99999999999999887767778889999999999999998877788
Q ss_pred HHHHHHHHHHHHHHhhccccc-CCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccCCCCEEEEeccCC
Q psy6547 163 IENAYKMGEIFRSELSSPANK-SKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPISNNIIRLSPALN 241 (266)
Q Consensus 163 ~~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~iR~~~~~~ 241 (266)
.++++++.+++++.|++.+.. ..+.. .++.|. ++++.+.+ +...+.+.|.++||++.+.+.+++|++|++.
T Consensus 289 ~~~~~~~~~~l~~~L~~~~~~~~~~~~-v~~~g~---~~~i~~~~----~~~~~~~~l~~~gv~v~~~g~~~lRi~p~~~ 360 (377)
T PRK02936 289 LEEVQEKGEYFLQKLQEELEHLECVKN-IRGKGL---MIGIECTE----EVAPVIEQLREEGLLVLSAGPNVIRLLPPLV 360 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCcEEe-Eeecce---EEEEEecc----hHHHHHHHHHHCCeEEecCCCCEEEEECCcc
Confidence 999999999999999873322 23333 567788 99999876 3678999999999999998778999999999
Q ss_pred CCHHHHHHHHHHHHHHH
Q psy6547 242 ITEQELREGLDIIINTI 258 (266)
Q Consensus 242 ~t~~~i~~~~~~l~~~~ 258 (266)
++++++++++++|++++
T Consensus 361 ~~~~~i~~~i~~l~~~~ 377 (377)
T PRK02936 361 VTKEELDQAVYLLKKVL 377 (377)
T ss_pred cCHHHHHHHHHHHHHhC
Confidence 99999999999998763
No 52
>PRK05639 4-aminobutyrate aminotransferase; Provisional
Probab=100.00 E-value=3.2e-36 Score=266.50 Aligned_cols=249 Identities=32% Similarity=0.544 Sum_probs=212.8
Q ss_pred CcccccCCCCCCceeecCCC-------------H--------HHHHHHHhc----CCCEEEEEEccccCCCCcccCChHH
Q psy6547 8 TSYNEFGPHMPGYNIIPYND-------------V--------DALEAKLKS----NPNICAFMVEPIQGEAGAVVPDDGY 62 (266)
Q Consensus 8 ~~~~~~~~~~~~v~~~~~~d-------------~--------~~l~~~l~~----~~~~~~i~~~~~~~~~g~~~~~~~~ 62 (266)
...+.|.|..++++.+|+++ . +.+++.+.. .+++++|++||+++.+|.+.+++++
T Consensus 165 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~~iAAvI~EPiqg~gG~~~p~~~y 244 (457)
T PRK05639 165 SQKRGFSPLMPNVVWIPYPNPYRNPWGINGYEEPDELINRFLDYLENYVFSHVVPPDEVAALFAEPIQGDAGIVVPPENF 244 (457)
T ss_pred ccccCCCCCCCCceEeCCCccccccccccccCCHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCccCCCCCcCCCHHH
Confidence 34566888889999999874 2 245555422 3489999999999999999999999
Q ss_pred HHHHHHHHHhcCCEEEEeccccCcCCcCcccccccCCCCcCeeeecccccCCchhhhhheecHHhhhccCCCCCCCCCCC
Q psy6547 63 LKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGG 142 (266)
Q Consensus 63 l~~l~~l~~~~g~~li~De~~~~~~~~g~~~~~~~~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 142 (266)
+++|+++|++||+++|+||+++|||++|..|+.+.+++.||+++++|++++| +|+|++++++++++. ....+..|+++
T Consensus 245 l~~l~~lc~~~g~llI~DEv~tG~GrtG~~~a~~~~gv~PDiv~~gK~l~gG-~pi~av~~~~~i~~~-~~~~~~~T~~g 322 (457)
T PRK05639 245 FKELKKLLDEHGILLVMDEVQTGIGRTGKWFASEWFEVKPDLIIFGKGVASG-MGLSGVIGRKELMDL-TSGSALLTPAA 322 (457)
T ss_pred HHHHHHHHHHcCCEEEEechhhccCcCchHHHHHhcCCCCCEEEechhhcCC-CcceeEEehHHHHhh-cCCCcccCCCc
Confidence 9999999999999999999999999999988888899999999999999999 999999999999883 33356789999
Q ss_pred cHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccc-CCCcccEEecCccceeeEEEEeeCc----cchHHHHHH
Q psy6547 143 NPLACKLAMTALDVILEENMIENAYKMGEIFRSELSSPANK-SKASFKLSSGGLKKSINTLILSVSA----ILEVYDVCI 217 (266)
Q Consensus 143 ~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~----~~~~~~~~~ 217 (266)
+|++++++.++|+.++++++.++.+++.++++++|+++... ..+.. +++.|+ ++.+.+..+. ......+++
T Consensus 323 ~p~~~aaa~a~l~~l~~~~l~~~~~~~g~~l~~~L~~l~~~~~~~~~-VrG~Gl---~~gve~~~~~~~~~~~~~~~~~~ 398 (457)
T PRK05639 323 NPVISAAAEATLEIIEEENLLKNALKVGEFIKKRLLEMKESFEVIGD-VRGKGL---MIGVEIVKENGKPDPELTGKICW 398 (457)
T ss_pred CHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHhCCCEEe-ecccee---EEEEEEecCCCCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999983333 33444 899999 9999885421 123567889
Q ss_pred HHHHCCceeccCC--CCEEEEeccCCCCHHHHHHHHHHHHHHHHHHh
Q psy6547 218 KMKDAGLVTKPIS--NNIIRLSPALNITEQELREGLDIIINTINTMA 262 (266)
Q Consensus 218 ~l~~~gi~~~~~~--~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~~ 262 (266)
.|+++|+++.+.+ .+.+|++|++.+|++++++++++|+++++...
T Consensus 399 ~~~~~Gv~~~~~g~~~~~lr~~Ppl~it~~~id~~~~~l~~~l~~~~ 445 (457)
T PRK05639 399 RAFELGLILPSYGMFGNVIRITPPLVITKEIAEKGLEIMERAIKDAL 445 (457)
T ss_pred HHHhCCeEEeecCCCCCEEEEeCCCccCHHHHHHHHHHHHHHHHHHH
Confidence 9999999998754 58999999999999999999999999998764
No 53
>PRK05630 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=100.00 E-value=3.2e-36 Score=264.42 Aligned_cols=244 Identities=26% Similarity=0.434 Sum_probs=210.2
Q ss_pred cCcccccCCCCCCceeecCCC------------HHHHHHHHhcCCCEEEEEEccc-cCCCCcccCChHHHHHHHHHHHhc
Q psy6547 7 PTSYNEFGPHMPGYNIIPYND------------VDALEAKLKSNPNICAFMVEPI-QGEAGAVVPDDGYLKKVRALCSQY 73 (266)
Q Consensus 7 ~~~~~~~~~~~~~v~~~~~~d------------~~~l~~~l~~~~~~~~i~~~~~-~~~~g~~~~~~~~l~~l~~l~~~~ 73 (266)
+..++.|.|..+++..+|++. .++++++++ +++++|++||+ ++.+|.++++.+++++|+++|++|
T Consensus 157 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~--~~iAAvi~EPi~qg~gG~~~~~~~~l~~lr~lc~~~ 234 (422)
T PRK05630 157 GGMHSLWKGTLPEQIFAPAPPVRGSSPQEISEYLRSLELLID--ETVAAIIIEPIVQGAGGMRFHDVALIEGVRTLCDKH 234 (422)
T ss_pred ccccccccccCCCCeEcCCCcccCCChHHHHHHHHHHHHHHh--hceEEEEEechhcCcCCcccCCHHHHHHHHHHHHHc
Confidence 345566777777777776552 234555552 47999999996 999999999999999999999999
Q ss_pred CCEEEEeccccCcCCcCcccccccCCCCcCeeeecccccCCchhhhhheecHHhhhccCC------CCCCCCCCCcHHHH
Q psy6547 74 NVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVP------GTHGSTYGGNPLAC 147 (266)
Q Consensus 74 g~~li~De~~~~~~~~g~~~~~~~~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~------~~~~~~~~~~~~~~ 147 (266)
|+++|+||+++|||++|..|+++.+++.||+++++|+++||++|+|++++++++.+.+.. ..+.+||+++|+++
T Consensus 235 g~llI~DEv~tG~GrtG~~~a~~~~gv~PDi~t~gK~l~gG~~p~~av~~~~~i~~~~~~~~~~~~~~h~~T~~g~Pla~ 314 (422)
T PRK05630 235 DILLIADEIATGFGRTGELFATLAAGVTPDIMCVGKALTGGFMSFAATLCTDKVAQLISTPNGGGALMHGPTFMANPLAC 314 (422)
T ss_pred CCEEEEecceeCCCcCchhhHHHhcCCCCCeeeeechhhcCccccceeeccHHHHHHHhccCCCCccccCCCCcCCHHHH
Confidence 999999999999999999889888999999999999999995599999999999887742 25789999999999
Q ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccc-CCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCcee
Q psy6547 148 KLAMTALDVILEENMIENAYKMGEIFRSELSSPANK-SKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVT 226 (266)
Q Consensus 148 ~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~ 226 (266)
+++.++|+.++++++++++.++.+++++.|+. +.. +.+.. +++.|+ ++.+++.+ ..++..+.+.++++|+++
T Consensus 315 aaa~aaL~~l~~~~~~~~~~~~g~~l~~~L~~-l~~~~~v~~-vRg~Gl---~~~ie~~~--~~~~~~~~~~~~~~Gl~~ 387 (422)
T PRK05630 315 AVAHASLEIIETGMWRKQVKRIEAELIAGLSP-LAHLPGVAD-VRVLGA---IGVVEMEQ--PVDMEEATQAAVDHGVWL 387 (422)
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHH-hhcCCCeee-eecccc---EEEEEECC--cccHHHHHHHHHHCCeEE
Confidence 99999999999889999999999999999987 443 44555 899999 99999976 334678999999999999
Q ss_pred ccCCCCEEEEeccCCCCHHHHHHHHHHHHHHHHH
Q psy6547 227 KPISNNIIRLSPALNITEQELREGLDIIINTINT 260 (266)
Q Consensus 227 ~~~~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~ 260 (266)
.+.+ +.+|+.|++.+|++++++++++|+++++.
T Consensus 388 ~~~g-~~l~~~PpL~it~~~i~~~~~~l~~al~~ 420 (422)
T PRK05630 388 RPFG-RLVYVMPPYITTSEQIAQICAALAAAVKA 420 (422)
T ss_pred EecC-CEEEEECCccCCHHHHHHHHHHHHHHHhc
Confidence 8864 89999999999999999999999999864
No 54
>TIGR00700 GABAtrnsam 4-aminobutyrate aminotransferase, prokaryotic type. Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase.
Probab=100.00 E-value=4.9e-36 Score=264.22 Aligned_cols=247 Identities=33% Similarity=0.550 Sum_probs=212.1
Q ss_pred CcccccCCCCCCceeecCCC----------------HHHHHHHHh--c-CCCEEEEEEccccCCCCcccCChHHHHHHHH
Q psy6547 8 TSYNEFGPHMPGYNIIPYND----------------VDALEAKLK--S-NPNICAFMVEPIQGEAGAVVPDDGYLKKVRA 68 (266)
Q Consensus 8 ~~~~~~~~~~~~v~~~~~~d----------------~~~l~~~l~--~-~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~ 68 (266)
...+.|.|+.+++..+++++ +++++++++ . .+++++|++||+++.+|.+.++++++++|++
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iAavi~Epi~g~~G~~~~~~~~l~~l~~ 225 (420)
T TIGR00700 146 PYKSGFGPFAPEVYRAPLPYPYRDGLLDKQLSTDGELAAARAIFVIDVGANNVAALVIEPVQGEGGFIVPAKGFVPALLD 225 (420)
T ss_pred ccccCCCCCCCCcEEeCCCccccccccccchhHHHHHHHHHHHHHhhcCCCcEEEEEECCccCCCCCccCCHHHHHHHHH
Confidence 35566888888888888752 567777763 1 3489999999999999999899999999999
Q ss_pred HHHhcCCEEEEeccccCcCCcCcccccccCCCCcCeeeecccccCCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHH
Q psy6547 69 LCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACK 148 (266)
Q Consensus 69 l~~~~g~~li~De~~~~~~~~g~~~~~~~~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (266)
+|++||+++|+||+|+||+++|..+++..+++.||++++||++++| +|+||+++++++++.+....+.+|+++++++++
T Consensus 226 lc~~~gillI~DEV~tg~gr~g~~~a~~~~~~~pDi~~lsK~l~~G-~pig~v~~~~~i~~~~~~~~~~~T~~~~pl~~a 304 (420)
T TIGR00700 226 WCREHGIVFIADEVQTGFARTGAMFACEHEGPEPDLITTAKSLADG-LPLSGVTGRAEIMDAPAPGGLGGTYAGNPLACA 304 (420)
T ss_pred HHHHcCCEEEEEecccCCcccchhHHHhhcCCCCCEEEeeccccCC-cceEEEEecHHHHhhcCCCCcCCCCCcCHHHHH
Confidence 9999999999999999999999877888889999999999999999 999999999999988877778899999999999
Q ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccc-CCCcccEEecCccceeeEEEEeeCc-----cchHHHHHHHHHHC
Q psy6547 149 LAMTALDVILEENMIENAYKMGEIFRSELSSPANK-SKASFKLSSGGLKKSINTLILSVSA-----ILEVYDVCIKMKDA 222 (266)
Q Consensus 149 a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~-----~~~~~~~~~~l~~~ 222 (266)
++.++|+.++.+++.+++++..++++++|+++... +.+.. +++.|. ++++.+.+.. ......+.+.+.++
T Consensus 305 aa~a~l~~l~~~~~~~~~~~~g~~l~~~L~~l~~~~~~~~~-vrg~G~---~~~i~~~~~~~~~~~~~~~~~l~~~~~~~ 380 (420)
T TIGR00700 305 AALAVLAIIESEGLIERARQIGRLVTDRLTTLKAVDPRIGD-VRGLGA---MIAVELVDPGTTEPDAGLAERIATAAHAA 380 (420)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhCCCEEE-eeccce---EEEEEEecCCCCCccHHHHHHHHHHHHHC
Confidence 99999999989999999999999999999983332 23334 788899 9999884321 12356778888899
Q ss_pred CceeccCC--CCEEEEeccCCCCHHHHHHHHHHHHHHHH
Q psy6547 223 GLVTKPIS--NNIIRLSPALNITEQELREGLDIIINTIN 259 (266)
Q Consensus 223 gi~~~~~~--~~~iR~~~~~~~t~~~i~~~~~~l~~~~~ 259 (266)
||++.|++ ++++|++|+...+++++++++++|.++++
T Consensus 381 Gv~i~p~~~f~~~lRl~p~l~~~~~~l~~~~~~l~~~l~ 419 (420)
T TIGR00700 381 GLLLLTCGMFGNIIRFLPPLTIGDELLSEGLDILCAILA 419 (420)
T ss_pred CeEEeccCCCCCEEEEECCCCcCHHHHHHHHHHHHHHhh
Confidence 99999864 48999999998999999999999999874
No 55
>PRK05964 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=100.00 E-value=5.5e-36 Score=264.26 Aligned_cols=254 Identities=30% Similarity=0.481 Sum_probs=214.1
Q ss_pred CccCCcCcccccCCCCCCceeecC--CC-----HHHHHHHHhcC-CCEEEEEEcc-ccCCCCcccCChHHHHHHHHHHHh
Q psy6547 2 LITTDPTSYNEFGPHMPGYNIIPY--ND-----VDALEAKLKSN-PNICAFMVEP-IQGEAGAVVPDDGYLKKVRALCSQ 72 (266)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~v~~~~~--~d-----~~~l~~~l~~~-~~~~~i~~~~-~~~~~g~~~~~~~~l~~l~~l~~~ 72 (266)
|++.++.....|.|...++..+++ +| ++++++.++++ +++++|++|| +++.+|...++.+++++|+++|++
T Consensus 153 s~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~~l~~~~~~iaavi~Ep~i~~~gG~~~~~~~~l~~l~~lc~~ 232 (423)
T PRK05964 153 SVGDRGGMHALYTPLLFEQVTAPFPPDGYEQATLDALEALLEKHAGEIAAFIVEPLVQGAGGMLFYDPRYLAELRRICDR 232 (423)
T ss_pred hcCCCccccccccCcCCCCEEeCCCcchhHHHHHHHHHHHHHhCCCcEEEEEEecccccCCCcccCCHHHHHHHHHHHHH
Confidence 445555555667776666666665 45 88899999653 4899999999 689899998999999999999999
Q ss_pred cCCEEEEeccccCcCCcCcccccccCCCCcCeeeecccccCCchhhhhheecHHhhhccCC------CCCCCCCCCcHHH
Q psy6547 73 YNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVP------GTHGSTYGGNPLA 146 (266)
Q Consensus 73 ~g~~li~De~~~~~~~~g~~~~~~~~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~------~~~~~~~~~~~~~ 146 (266)
||+++|+||+|+||+++|..++++.+++.||++++||++++|++|+|++++++++++.+.. ..+.+||++++++
T Consensus 233 ~g~llI~DEv~tg~gr~G~~~a~~~~~v~pDi~~~~K~l~gG~~p~~av~~~~~i~~~~~~~~~~~~~~~~~T~~~np~~ 312 (423)
T PRK05964 233 HGVLLIFDEIATGFGRTGTLFACEQAGVSPDIMCLSKGLTGGYLPLAATLCTAEIFEAFYSDDRAKAFMHSPSYTANPLA 312 (423)
T ss_pred cCCEEEEechhhCCCcCcchhHHHhcCCCCCeeeeehhhhcCcccceEEEEcHHHHHhhhcCCcccccccCCCCCcCHHH
Confidence 9999999999999999998888888899999999999999875799999999999887742 1467889999999
Q ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhcccc-cCCCcccEEecCccceeeEEEEeeCcc-chHHHHHHHHHHCCc
Q psy6547 147 CKLAMTALDVILEENMIENAYKMGEIFRSELSSPAN-KSKASFKLSSGGLKKSINTLILSVSAI-LEVYDVCIKMKDAGL 224 (266)
Q Consensus 147 ~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~l~~~gi 224 (266)
++++.++++.++.+++.+++.++.+++++.|++ +. .+.+.. .++.|. ++.+.+.+... .....+.+.|.++||
T Consensus 313 ~aaa~a~l~~l~~~~~~~~~~~~g~~l~~~l~~-l~~~~~i~~-vrg~Gl---~~~i~l~~~~~~~~~~~l~~~l~~~Gv 387 (423)
T PRK05964 313 CAAANASLDLFEDEPVLERVAALSAGLAEGLEP-FRDLPGVAD-VRVLGA---IGAVELDRPVLERDGPALRAFALERGV 387 (423)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHh-hccCCCeEE-eecccE---EEEEEeccCcchhHHHHHHHHHHHCCe
Confidence 999999999998889999999999999999998 53 234444 678888 99999865211 136789999999999
Q ss_pred eeccCCCCEEEEeccCCCCHHHHHHHHHHHHHHHHHH
Q psy6547 225 VTKPISNNIIRLSPALNITEQELREGLDIIINTINTM 261 (266)
Q Consensus 225 ~~~~~~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~ 261 (266)
++.+. .+.+|++|++.+|++|||+++++++++++++
T Consensus 388 ~v~~~-~~~lR~~p~l~~t~edId~~v~~l~~al~~~ 423 (423)
T PRK05964 388 LLRPL-GNTIYLMPPYIITAEELDRITDAIVEVADEL 423 (423)
T ss_pred EEEec-CCEEEEeCCcccCHHHHHHHHHHHHHHHhhC
Confidence 99886 4799999999999999999999999998763
No 56
>PRK00854 rocD ornithine--oxo-acid transaminase; Reviewed
Probab=100.00 E-value=8.6e-36 Score=261.91 Aligned_cols=249 Identities=47% Similarity=0.813 Sum_probs=215.4
Q ss_pred ccCCcCcccccCCCCCCceeecCCCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEecc
Q psy6547 3 ITTDPTSYNEFGPHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEV 82 (266)
Q Consensus 3 ~~~~~~~~~~~~~~~~~v~~~~~~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~ 82 (266)
++.+|..++.|.|+.+++..++|+|+++|++.+ .+++++|++|++++++|.+..+.+++++|+++|++||+++|+||+
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~i--~~~~~aii~e~~~~~~G~~~~~~~~l~~l~~l~~~~gi~lI~DEv 229 (401)
T PRK00854 152 FSTDPDARGGFGPFTPGFRVVPFGDAEALEAAI--TPNTVAFLVEPIQGEAGVIIPPAGYFTRVRELCTANNVTLILDEI 229 (401)
T ss_pred ccCCccccccCCCCCCCeEEeCCCCHHHHHHHh--CCCeEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEech
Confidence 455666667788999999999999999999999 457999999999999999977788999999999999999999999
Q ss_pred ccCcCCcCcccccccCCCCcCeeeecccccCCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHhhccH
Q psy6547 83 QTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENM 162 (266)
Q Consensus 83 ~~~~~~~g~~~~~~~~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~ 162 (266)
|+|++++|..+.....++.+|++++||++++|++|+|++++++++++.+....+..+++++++.++++.++|+.++.+++
T Consensus 230 ~~g~g~~g~~~~~~~~g~~~D~~~~~K~l~gg~~~ig~v~~~~~~~~~l~~~~~~~t~~~~~~~~aa~~a~L~~l~~~~~ 309 (401)
T PRK00854 230 QTGLGRTGKLLAEEHEGIEADVTLIGKALSGGFYPVSAVLSNSEVLGVLKPGQHGSTFGGNPLACAVARAALKVLTEEGM 309 (401)
T ss_pred hhCCCCCchHhHHhhcCCCCCEEEecccccCCccCeEEEEEcHHHHhcccCCCCCCCCCcCHHHHHHHHHHHHHHHHcCH
Confidence 99998888766656678899999999999988579999999999998887666778888999999999999999887788
Q ss_pred HHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccCCCCEEEEeccCCC
Q psy6547 163 IENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNI 242 (266)
Q Consensus 163 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~iR~~~~~~~ 242 (266)
.++++++++++.+.|++ +....+.. .++.|. ++.+.+... ..+..++++.|+++||.+.+.+.+++|+++++.+
T Consensus 310 ~~~~~~~~~~l~~~L~~-~~~~~~~~-~~g~g~---~~~i~~~~~-~~~~~~~~~~L~~~GV~v~~~~~~~lR~~p~~~~ 383 (401)
T PRK00854 310 IENAAEMGAYFLEGLRS-IRSNIVRE-VRGRGL---MLAVELEPE-AGGARQYCEALKERGLLAKDTHDHTIRLAPPLVI 383 (401)
T ss_pred HHHHHHHHHHHHHHHHh-hccCceEE-Eeccce---EEEEEEecC-chhHHHHHHHHHHCCeEEecCCCCEEEEeCCccc
Confidence 99999999999999998 54432333 567788 888876431 2356789999999999998876789999999999
Q ss_pred CHHHHHHHHHHHHHHHH
Q psy6547 243 TEQELREGLDIIINTIN 259 (266)
Q Consensus 243 t~~~i~~~~~~l~~~~~ 259 (266)
+++++++++++|++++.
T Consensus 384 t~e~i~~~i~~l~~~l~ 400 (401)
T PRK00854 384 TREQVDWALEQIAKVLA 400 (401)
T ss_pred CHHHHHHHHHHHHHHhh
Confidence 99999999999998764
No 57
>PRK02627 acetylornithine aminotransferase; Provisional
Probab=100.00 E-value=9.1e-36 Score=261.42 Aligned_cols=246 Identities=39% Similarity=0.688 Sum_probs=212.8
Q ss_pred CCcCcccccCCCCCCceeecCCCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEecccc
Q psy6547 5 TDPTSYNEFGPHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQT 84 (266)
Q Consensus 5 ~~~~~~~~~~~~~~~v~~~~~~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~ 84 (266)
+.+.....+.|+..++..++++|++++++++ .+++++|+++|+++++|..+++++++++|+++|++||+++|+||+|+
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i--~~~~~~vii~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DE~~~ 226 (396)
T PRK02627 149 GQPKYQEGFEPLVEGFIYVPFNDIEALKAAI--TDKTAAVMLEPIQGEGGVNPADKEYLQALRELCDENGILLILDEVQT 226 (396)
T ss_pred CCccccccCCCCCCCceEeCCCCHHHHHHhc--CCCeEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhc
Confidence 3343444567777888999999999999999 45799999999999998777999999999999999999999999999
Q ss_pred CcCCcCcccccccCCCCcCeeeecccccCCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHhhccHHH
Q psy6547 85 GLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIE 164 (266)
Q Consensus 85 ~~~~~g~~~~~~~~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~ 164 (266)
+|++.|..++....++.||+++|||++++| +|+||+++++++++.+....+..+++++++.++++.++|+.++.+++.+
T Consensus 227 g~g~~g~~~~~~~~~~~pdi~t~sK~~~~G-~rig~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~~~~~~~ 305 (396)
T PRK02627 227 GMGRTGKLFAYQHYGIEPDIMTLAKGLGGG-VPIGAVLAKEKVADVFTPGDHGSTFGGNPLACAAALAVIEIIEEEGLLE 305 (396)
T ss_pred CCCccCceeeehhcCCCCCEEEEcchhhCC-cccEEEEEcHHHHhccCCCCCCCCCCCCHHHHHHHHHHHHHHhhccHHH
Confidence 998888766666778899999999999999 9999999999999888776788899999999999999999888888999
Q ss_pred HHHHHHHHHHHHhhcccccC-CCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccCCCCEEEEeccCCCC
Q psy6547 165 NAYKMGEIFRSELSSPANKS-KASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNIT 243 (266)
Q Consensus 165 ~~~~~~~~l~~~l~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~iR~~~~~~~t 243 (266)
+++++.+.++++|.+..... .+.. .++.|. ++++.+.. +..+++++|.++||++.+.+.+++|+++++.++
T Consensus 306 ~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~g~---~~~i~~~~----~~~~~~~~l~~~Gv~v~~~~~~~lRi~~~~~~~ 377 (396)
T PRK02627 306 NAAEVGEYLRAKLRELLEKYPGIKE-VRGLGL---MIGIELDR----PAAEIVKKALEKGLLINVTGDNVLRLLPPLIIS 377 (396)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCeee-eccCcE---EEEEEecC----cHHHHHHHHHHCCeEEeecCCCEEEEECCcccC
Confidence 99999999999988732222 2333 567788 99998843 578899999999999999877899999999999
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy6547 244 EQELREGLDIIINTINTM 261 (266)
Q Consensus 244 ~~~i~~~~~~l~~~~~~~ 261 (266)
++++++++++|+++++++
T Consensus 378 ~~~i~~~~~~l~~~l~~~ 395 (396)
T PRK02627 378 KEEIDEAVDRLEEVLKEL 395 (396)
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 999999999999998764
No 58
>PRK12403 putative aminotransferase; Provisional
Probab=100.00 E-value=1.8e-35 Score=262.39 Aligned_cols=256 Identities=24% Similarity=0.407 Sum_probs=210.7
Q ss_pred CccCCcCcccccCCCCCCceeecCCC-----------------HHHHHHHHhc-C-CCEEEEEEccccCCCCcccCChHH
Q psy6547 2 LITTDPTSYNEFGPHMPGYNIIPYND-----------------VDALEAKLKS-N-PNICAFMVEPIQGEAGAVVPDDGY 62 (266)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~v~~~~~~d-----------------~~~l~~~l~~-~-~~~~~i~~~~~~~~~g~~~~~~~~ 62 (266)
++++.+..+ .+.|..+++.++|++. ++++++.+.+ . +++++|++||+++++|.+.+++++
T Consensus 166 s~s~~~~~~-~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~iaavI~Epv~g~gG~~~~~~~y 244 (460)
T PRK12403 166 ALGGMKFMH-EMGGLIPDVAHIDEPYWYANGGELTPAEFGRRAALQLEEKILELGAENVAGFVAEPFQGAGGMIFPPESY 244 (460)
T ss_pred hcCCCcccc-ccCCCCCCCEEeCCCcccccccCCChHHHHHHHHHHHHHHHHHhCCCceEEEEEccccCCCCCccCCHHH
Confidence 344444333 3566777888887553 3567666633 2 479999999999999999999999
Q ss_pred HHHHHHHHHhcCCEEEEeccccCcCCcCcccccccCCCCcCeeeecccccCCchhhhhheecHHhhhccCC----CCCCC
Q psy6547 63 LKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVP----GTHGS 138 (266)
Q Consensus 63 l~~l~~l~~~~g~~li~De~~~~~~~~g~~~~~~~~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~----~~~~~ 138 (266)
+++|+++|++||+++|+||+++||||+|..|+++.+|+.||+++++|++++|++|+|.+++++++++.+.. ..+.+
T Consensus 245 l~~lr~lc~~~g~lLI~DEV~tGfGRtG~~~a~e~~gv~PDiv~~gK~lggG~~Piga~v~~~~i~~~~~~~~~~~~~~~ 324 (460)
T PRK12403 245 WPEIQRICRQYDVLLCADEVIGGFGRTGEWFAHEHFGFEPDTLSIAKGLTSGYVPMGGLVLSKRIAEALVEQGGVFAHGL 324 (460)
T ss_pred HHHHHHHHHHcCCEEEEeccccCCCcCchhhhhhhcCCCCCeEEEcccccccccceEEEEECHHHHHHHhcCCCccccCC
Confidence 99999999999999999999999999999999999999999999999999994599999999998887742 24788
Q ss_pred CCCCcHHHHHHHHHHHHHHhhccHHHHHH-HHHHHHHHHhhccccc-CCCcccEEecCccceeeEEEEeeCcc----c--
Q psy6547 139 TYGGNPLACKLAMTALDVILEENMIENAY-KMGEIFRSELSSPANK-SKASFKLSSGGLKKSINTLILSVSAI----L-- 210 (266)
Q Consensus 139 ~~~~~~~~~~a~~~~l~~~~~~~~~~~~~-~~~~~l~~~l~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~----~-- 210 (266)
||+++|+++++++++|+.++++++.++++ ++.+++++.|+++... +.+.. +++.|+ ++.+++..+.. .
T Consensus 325 T~~gnPl~~Aaala~L~~i~~~~l~~~~~~~~g~~l~~~L~~l~~~~~~i~~-vrG~Gl---~~gie~~~~~~~~~~~~~ 400 (460)
T PRK12403 325 TYSGHPVAAAVAIANLKALRDEGVVTRVKDDTGPYLQRCLREVFGDHPLVGE-VQGAGL---VAALQFAEDKATRKRFAN 400 (460)
T ss_pred CCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhcCCCEEe-Eeecce---EEEEEEccCccccccccc
Confidence 99999999999999999999999999996 8999999999873333 33445 899999 99999854211 0
Q ss_pred ---hHHHHHHHHHHCCceeccCCCCEEEEeccCCCCHHHHHHHHHHHHHHHHHHhh
Q psy6547 211 ---EVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINTMAA 263 (266)
Q Consensus 211 ---~~~~~~~~l~~~gi~~~~~~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~~~ 263 (266)
....+.+.+.++|+++.+. .+.+|++|++..|+++++++++.+++++.++.+
T Consensus 401 ~~~~~~~~~~~~~~~Gll~~~~-~~~~~l~Ppl~it~~eid~~~~~l~~al~~~~~ 455 (460)
T PRK12403 401 ENDLAWRCRTIGFEEGVIIRST-LGRMIMAPALVAGRAEIDELVDKTRIAVDRTAR 455 (460)
T ss_pred hhHHHHHHHHHHHhCCEEEEec-CCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 1234567778999999875 357999999999999999999999999988754
No 59
>PRK06917 hypothetical protein; Provisional
Probab=100.00 E-value=1.8e-35 Score=261.42 Aligned_cols=258 Identities=31% Similarity=0.499 Sum_probs=214.5
Q ss_pred CccCCcCcccccCCCCCCceeecCC-----------------CHHHHHHHHhcC--CCEEEEEEccccCC-CCcccCChH
Q psy6547 2 LITTDPTSYNEFGPHMPGYNIIPYN-----------------DVDALEAKLKSN--PNICAFMVEPIQGE-AGAVVPDDG 61 (266)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~v~~~~~~-----------------d~~~l~~~l~~~--~~~~~i~~~~~~~~-~g~~~~~~~ 61 (266)
++++++...+.|.|+.+++..++++ +++.+++++++. +++++|++||++++ +|.++++++
T Consensus 142 s~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~iAAvi~EPi~g~~gG~~~p~~~ 221 (447)
T PRK06917 142 SMSGHPLRRQRFVSLLEDYPTISAPYCYRCPVQKVYPTCQLACATELETAIERIGAEHIAAFIAEPIIGAAGAAVVPPKG 221 (447)
T ss_pred HhcCCccccccCCCCCCCCeEeCCCcccccccCCChHHHHHHHHHHHHHHHHhcCCCceEEEEEeccccCcCceecCCHH
Confidence 4455565666677776666555432 246788888653 37999999999875 568889999
Q ss_pred HHHHHHHHHHhcCCEEEEeccccCcCCcCcccccccCCCCcCeeeecccccCCchhhhhheecHHhhhccCC----CCCC
Q psy6547 62 YLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVP----GTHG 137 (266)
Q Consensus 62 ~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~~~~~~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~----~~~~ 137 (266)
++++|+++|++||+++|+||+++||||+|..|+++.+++.||++++||++++|++|+|++++++++++.+.. ..+.
T Consensus 222 fl~~lr~lc~~~g~llI~DEv~tGfGRtG~~~a~~~~gv~PDi~~~gK~l~~G~~Pi~a~~~~~~i~~~~~~~~~~~~~~ 301 (447)
T PRK06917 222 YYKVIKEICDHYDILFIADEVMTGLGRTGAMFAMEHWGVEPDIMTLGKGLGAGYTPIAATVVSDRVMEPILRGSRSIMSG 301 (447)
T ss_pred HHHHHHHHHHHcCCEEEEechhhCcCcccchhhHHhcCCCCCEEEeeehhccCCcceEEEEEcHHHHHHHhccCcccccc
Confidence 999999999999999999999999999999988889999999999999999994499999999999887753 2467
Q ss_pred CCCCCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccc-CCCcccEEecCccceeeEEEEeeCc--------
Q psy6547 138 STYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSSPANK-SKASFKLSSGGLKKSINTLILSVSA-------- 208 (266)
Q Consensus 138 ~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~-------- 208 (266)
+|+++||++++++.++|+.++++++.++++++.+++++.|+++... +.+.. +++.|+ ++.+++..+.
T Consensus 302 ~T~~gnpl~~aaa~a~l~~l~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~-vrG~Gl---~~~ie~~~~~~~~~~~~~ 377 (447)
T PRK06917 302 HTLSANPLSAATALAVLEYMEKHNLPEKAAEKGEYLIKGLQKVQQQSTIIGD-VRGKGL---LIGVEFVADKKTKQPFSK 377 (447)
T ss_pred cCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhcCCCEEE-Eeecce---EEEEEEeccCCcCCCCcc
Confidence 8999999999999999999999999999999999999999983332 33444 899999 9999985321
Q ss_pred -cchHHHHHHHHHHCCceeccCC-------CCEEEEeccCCCCHHHHHHHHHHHHHHHHHHhh
Q psy6547 209 -ILEVYDVCIKMKDAGLVTKPIS-------NNIIRLSPALNITEQELREGLDIIINTINTMAA 263 (266)
Q Consensus 209 -~~~~~~~~~~l~~~gi~~~~~~-------~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~~~ 263 (266)
......+++.|+++|+++.+.+ ++.+|++|++.+|++++++++++++++++++..
T Consensus 378 ~~~~~~~~~~~~~~~Gvl~~~~~~~~~g~~~~~i~l~Ppl~it~~eid~~~~~l~~~l~~~~~ 440 (447)
T PRK06917 378 SQAVASELISVAAKNGLLLYPAVAGQDGKEGDAVIIAPPMTITYSELDELLSIFAKSVEEMMQ 440 (447)
T ss_pred hhHHHHHHHHHHHhCCcEEEecccccCCCCCCEEEEECCCcCCHHHHHHHHHHHHHHHHHHHH
Confidence 0125678889999999998752 579999999999999999999999999988643
No 60
>PRK08360 4-aminobutyrate aminotransferase; Provisional
Probab=100.00 E-value=3.1e-35 Score=259.67 Aligned_cols=250 Identities=35% Similarity=0.579 Sum_probs=212.8
Q ss_pred cccccCCCCCCceeecCCC-----------------HHHHHHHHhc---CCCEEEEEEccccCCCCcccCChHHHHHHHH
Q psy6547 9 SYNEFGPHMPGYNIIPYND-----------------VDALEAKLKS---NPNICAFMVEPIQGEAGAVVPDDGYLKKVRA 68 (266)
Q Consensus 9 ~~~~~~~~~~~v~~~~~~d-----------------~~~l~~~l~~---~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~ 68 (266)
.+..|.| .+++.++++++ ++.+++++++ .+++++|++||+++++|.+.++++++++|++
T Consensus 154 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iAAvi~eP~~~~~G~~~~~~~~l~~l~~ 232 (443)
T PRK08360 154 VRALVGE-LSDVHYIPYPDCYRCPFGKEPGSCKMECVEYIKEKFEGEVYAEGVAALFAEPIQGDAGMIVPPEDYFKKLKK 232 (443)
T ss_pred cccCCCC-CCCcEEEeCCccccccccCchhhhHHHHHHHHHHHHHhccCCCCeEEEEECCccCCCCCcCCCHHHHHHHHH
Confidence 3445666 56778777754 3456677754 2579999999999999998788999999999
Q ss_pred HHHhcCCEEEEeccccCcCCcCcccccccCCCCcCeeeecccccCCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHH
Q psy6547 69 LCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACK 148 (266)
Q Consensus 69 l~~~~g~~li~De~~~~~~~~g~~~~~~~~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (266)
+|++||+++|+||+|+||+++|..++...+++.||++++||++++| +|+|++++++++++.+....+..++++++++++
T Consensus 233 l~~~~g~llI~DEv~~g~gr~G~~~a~~~~~~~pDiitlsK~l~~G-~pigav~~~~~i~~~~~~~~~~~T~~~~p~~~a 311 (443)
T PRK08360 233 ILDEHGILLVVDEVQSGLGRTGKWFAIEHFGVEPDIITLGKPLGGG-LPISATIGRAEIMDSLPPLAHAFTLSGNPVASA 311 (443)
T ss_pred HHHHcCCEEEEeccccCCCcCccchhhhhcCCCCCEEEecccccCC-ceeEEEEEcHHHHhhhcCCCCCCCCCcCHHHHH
Confidence 9999999999999999999999877777789999999999999999 999999999999998877678889999999999
Q ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccc-CCCcccEEecCccceeeEEEEeeCc------cchHHHHHHHHHH
Q psy6547 149 LAMTALDVILEENMIENAYKMGEIFRSELSSPANK-SKASFKLSSGGLKKSINTLILSVSA------ILEVYDVCIKMKD 221 (266)
Q Consensus 149 a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~------~~~~~~~~~~l~~ 221 (266)
++.++|+.++++++.++++++.+++++.|+++... +.+.. +++.|. ++.+++.+.. ...+..+.++|.+
T Consensus 312 aa~a~l~~l~~~~l~~~~~~~g~~l~~~L~~l~~~~~~v~~-vrg~Gl---~~gie~~~~~~~~~~~~~~~~~~~~~l~~ 387 (443)
T PRK08360 312 AALAVIEEIEEKNLLKRAEKLGNYTKKRLEEMKKKHELIGD-VRGIGL---MIGVDLVKDRETKERAYEEAAKVVWRAWE 387 (443)
T ss_pred HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhCCCeee-eeccce---EEEEEEecCCcccCccHHHHHHHHHHHHH
Confidence 99999999988899999999999999999983332 34444 889999 9999886421 1235678899999
Q ss_pred CCceeccCCCCEEEEeccCCCCHHHHHHHHHHHHHHHHHHhhc
Q psy6547 222 AGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINTMAAK 264 (266)
Q Consensus 222 ~gi~~~~~~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~~~~ 264 (266)
+|+++.+...+.+|++|++.+|++++++++++++++++.+.+.
T Consensus 388 ~Gi~~~~~~~~~lr~~P~l~~t~~~id~~~~~l~~~l~~~~~~ 430 (443)
T PRK08360 388 LGLIVTFFSGNVLRIQPPLTIEKEVLDEGLDILEEAIEDVEEG 430 (443)
T ss_pred CCeEEeecCCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHhc
Confidence 9999987667999999999999999999999999999886543
No 61
>PRK06918 4-aminobutyrate aminotransferase; Reviewed
Probab=100.00 E-value=1.5e-34 Score=256.61 Aligned_cols=257 Identities=32% Similarity=0.575 Sum_probs=213.4
Q ss_pred CccCC-cCcccccCCCCCCceeecCCC-----------------HHHHHHHHh---cCCCEEEEEEccccCCCCcccCCh
Q psy6547 2 LITTD-PTSYNEFGPHMPGYNIIPYND-----------------VDALEAKLK---SNPNICAFMVEPIQGEAGAVVPDD 60 (266)
Q Consensus 2 ~~~~~-~~~~~~~~~~~~~v~~~~~~d-----------------~~~l~~~l~---~~~~~~~i~~~~~~~~~g~~~~~~ 60 (266)
|+++. +..+..|.|+.+++..+|+++ ++.+++.+. ..+++++|++||+++.+|.+.++.
T Consensus 160 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iAavi~EPi~g~gG~~~~~~ 239 (451)
T PRK06918 160 TMTSKVKPYKFGFGPFAPEVYKAPFPYEYRRPEGLTEEQYDDFMIEEFKNFFISEVAPETIAAVVMEPVQGEGGFIVPSK 239 (451)
T ss_pred hhcCCCccccccCCCCCCCcEEcCCCccccccccCchHHHHHHHHHHHHHHHHhhcCCCceEEEEECcccCCCCCccCCH
Confidence 33443 335566888888898887763 123454442 124799999999999999988999
Q ss_pred HHHHHHHHHHHhcCCEEEEeccccCcCCcCcccccccCCCCcCeeeecccccCCchhhhhheecHHhhhccCCCCCCCCC
Q psy6547 61 GYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTY 140 (266)
Q Consensus 61 ~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~~~~~~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~ 140 (266)
+++++|+++|++||+++|+||+|+||+++|..+++..+++.||++++||++++| +|+||+++++++++.+....+..|+
T Consensus 240 ~~l~~l~~l~~~~gillI~DEV~tg~gr~g~~~a~~~~~v~pDi~t~sK~l~~G-~pig~v~~~~~i~~~~~~~~~~~T~ 318 (451)
T PRK06918 240 KFVQEVRNICSEHGILFVADEIQTGFARTGKYFAIEHFDVVPDLITVSKSLGAG-VPISGVIGRKEIMDESAPGELGGTY 318 (451)
T ss_pred HHHHHHHHHHHHcCCEEEEeccccCcCccCceehhHhcCCCCCEEeeehhhcCC-CccEEEEEcHHHHhccCCCCcCcCC
Confidence 999999999999999999999999999999877777888899999999999999 9999999999999988777788999
Q ss_pred CCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccc-CCCcccEEecCccceeeEEEEeeC------ccchHH
Q psy6547 141 GGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSSPANK-SKASFKLSSGGLKKSINTLILSVS------AILEVY 213 (266)
Q Consensus 141 ~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~------~~~~~~ 213 (266)
++++++++++.++|+.++++++.+++++.+++++++|+++... +.+.. +++.|. ++.+.+..+ +.....
T Consensus 319 ~g~~l~~aaa~a~l~~i~~~~~~~~~~~~g~~l~~~l~~l~~~~~~~~~-vrg~G~---~~~~~~~~~~~~~~~~~~~~~ 394 (451)
T PRK06918 319 AGSPLGCAAALAVLDIIEKENLNDRAIELGKVVMNRFEEMKNKYNCIGD-VRGLGA---MCAFELVQDRKTKEPDKTLTA 394 (451)
T ss_pred CcCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhCCCcee-ecccee---EEEEEEccCCCcCCCcHHHHH
Confidence 9999999999999999988899999999999999999983222 33333 778888 888877421 122356
Q ss_pred HHHHHHHHCCceeccCC--CCEEEEeccCCCCHHHHHHHHHHHHHHHHHHhh
Q psy6547 214 DVCIKMKDAGLVTKPIS--NNIIRLSPALNITEQELREGLDIIINTINTMAA 263 (266)
Q Consensus 214 ~~~~~l~~~gi~~~~~~--~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~~~ 263 (266)
.+.+.|.++||++.+++ ++++|++|++.++++++++++++|+++++++..
T Consensus 395 ~l~~~~~~~Gvlv~~~~~~~~~lrl~p~l~~t~~~id~~l~~l~~~l~~~~~ 446 (451)
T PRK06918 395 NICKEANKRGLLLLSAGTYGNVIRVLMPLVITDEQLEEGLTIIEESLQACYE 446 (451)
T ss_pred HHHHHHHHCCeEEeecCCCCCEEEEECCCccCHHHHHHHHHHHHHHHHHHHH
Confidence 78888899999998864 389999999999999999999999999987643
No 62
>PRK05769 4-aminobutyrate aminotransferase; Provisional
Probab=100.00 E-value=1.3e-34 Score=255.85 Aligned_cols=248 Identities=39% Similarity=0.617 Sum_probs=211.1
Q ss_pred cCcccccCCCCCCceeecCCC------------------HHHHHH-HHhc---CCCEEEEEEccccCCCCcccCChHHHH
Q psy6547 7 PTSYNEFGPHMPGYNIIPYND------------------VDALEA-KLKS---NPNICAFMVEPIQGEAGAVVPDDGYLK 64 (266)
Q Consensus 7 ~~~~~~~~~~~~~v~~~~~~d------------------~~~l~~-~l~~---~~~~~~i~~~~~~~~~g~~~~~~~~l~ 64 (266)
+..+..|.|..+++..+++++ ++.+++ ++++ .+++++|++||+++++|.+.+++++++
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~iaavi~Epv~g~~G~~~~~~~~l~ 245 (441)
T PRK05769 166 PVQRKGFFPLMPGVIHVPYPNPYRNPWGIENPEECGNAVLDFIEDYLFKKLVPPEEVAAIIVEPIQGEGGYVVPPKNFFK 245 (441)
T ss_pred cccccCCCCCCCCeEEeCCCccccccccCCchHHHHHHHHHHHHHHHHhhccCCCceEEEEECcccCCCCCcCCCHHHHH
Confidence 445667888889999888753 234666 4432 247999999999999999999999999
Q ss_pred HHHHHHHhcCCEEEEeccccCcCCcCcccccccCCCCcCeeeecccccCCchhhhhheecHHhhhccCCCCCCCCCCCcH
Q psy6547 65 KVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNP 144 (266)
Q Consensus 65 ~l~~l~~~~g~~li~De~~~~~~~~g~~~~~~~~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (266)
+|+++|++||+++|+||+++||+++|..|+++.+++.||++++||++++| +|+|++++++++++.+ ...+.+||+++|
T Consensus 246 ~l~~l~~~~g~lli~DEv~tG~gr~G~~~a~~~~gv~pDivt~~K~l~~G-~p~gav~~~~~i~~~~-~~~~~~T~~g~p 323 (441)
T PRK05769 246 ELRKLADKYGILLIDDEVQTGMGRTGKMFAIEHFGVEPDIITLAKAIAGG-LPLGAVIGRAELMFLP-PGSHANTFGGNP 323 (441)
T ss_pred HHHHHHHHcCCEEEEechhhCCCcccceehhhccCCCCCEEEEcccccCC-cccEEEEEehhhhhcC-CCCCCCCCCcCH
Confidence 99999999999999999999999999888888889999999999999999 9999999999987543 346888999999
Q ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccc-CCCcccEEecCccceeeEEEEeeCc----cchHHHHHHHH
Q psy6547 145 LACKLAMTALDVILEENMIENAYKMGEIFRSELSSPANK-SKASFKLSSGGLKKSINTLILSVSA----ILEVYDVCIKM 219 (266)
Q Consensus 145 ~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~----~~~~~~~~~~l 219 (266)
++++++.++|+.+++ ++.++++++.+++++.|++.... +.+.. +++.|. ++.+.+.+.. ......+.+.|
T Consensus 324 ~~~aaa~a~L~~l~~-~~~~~~~~~g~~l~~~L~~l~~~~~~~~~-vrg~G~---~~~i~~~~~~~~~~~~~~~~~~~~~ 398 (441)
T PRK05769 324 VAAAAALATLEELEE-GLLENAQKLGEYLRKELKELKEKYEFIGD-VRGLGL---MIGVELVKDRKEPDPKLRDKVLYEA 398 (441)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhCCCeee-eecceE---EEEEEeccCCccccHHHHHHHHHHH
Confidence 999999999999988 99999999999999999983322 33344 889999 9999885421 12356788899
Q ss_pred HHCCceeccCCCCEEEEeccCCCCHHHHHHHHHHHHHHHHHH
Q psy6547 220 KDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINTM 261 (266)
Q Consensus 220 ~~~gi~~~~~~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~ 261 (266)
+++||++.+.+.+.+|++|++.+|+++++++++++++++.++
T Consensus 399 ~~~Gil~~~~~~~~lr~~p~l~~t~~~id~~~~~l~~~l~~~ 440 (441)
T PRK05769 399 FKRGLLLLGAGKSAIRIIPPLIITEEEADIGLEILEEAIKEL 440 (441)
T ss_pred HhCCcEEecCCCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 999999998777899999999999999999999999998764
No 63
>KOG1404|consensus
Probab=100.00 E-value=9.3e-35 Score=239.76 Aligned_cols=248 Identities=31% Similarity=0.461 Sum_probs=215.9
Q ss_pred CCccCCcCcccccCCCCCCceeecCCCH------------------HHHHHHHhc--CCCEEEEEEccccCCCCcccCCh
Q psy6547 1 MLITTDPTSYNEFGPHMPGYNIIPYNDV------------------DALEAKLKS--NPNICAFMVEPIQGEAGAVVPDD 60 (266)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~v~~~~~~d~------------------~~l~~~l~~--~~~~~~i~~~~~~~~~g~~~~~~ 60 (266)
+|+++-++..+.|....+.+.+.+.+|+ ++++..+.. ...++++++|++++.+|.+.+++
T Consensus 153 ~glt~~~~~k~~~~~~~~~~~~~~~Pdp~r~~~~~~~~~e~~d~~a~~l~d~i~~~~~~~vAafiaEtIqGvgG~v~~p~ 232 (442)
T KOG1404|consen 153 LGLTGLSPWKQNFPGVASGVHHTMNPDPYRGIFGGSNEEEASDRYAKELEDLILYDGPETVAAFIAETIQGVGGIVELPP 232 (442)
T ss_pred cccccCCcccccCCCCCCcccccCCCCcccccCCCCchhhhHHHHHHHHHHHHHhcCCCceeEEEeehhccCCccccCCc
Confidence 4677888888888777778888877652 555656533 23799999999999999999999
Q ss_pred HHHHHHHHHHHhcCCEEEEeccccCcCCcCcccccccCCCCcCeeeecccccCCchhhhhheecHHhhhccCCCC-CCCC
Q psy6547 61 GYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGT-HGST 139 (266)
Q Consensus 61 ~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~~~~~~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~~~-~~~~ 139 (266)
.++++..++|+++|.++|.||+++||||+|..|.++..++.||+++++|++|+| +|+|+++.++++.+.+.... +..|
T Consensus 233 GYlka~~~~v~k~Ggl~IaDEVqtGfGRtG~~wgfe~h~v~PDIvTmAKgiGnG-~Pl~AVvtt~EIa~v~~~~~~~fnT 311 (442)
T KOG1404|consen 233 GYLKAAYKVVRKRGGLFIADEVQTGFGRTGHMWGFESHGVVPDIVTMAKGIGNG-FPLGAVVTTPEIADVLNQKSSHFNT 311 (442)
T ss_pred hHHHHHHHHHHHcCCEEEehhhhhccccccccccccccCCCccHHHHHhhccCC-CcceeeecCHHHHHHHHhccccccc
Confidence 999999999999999999999999999999989999999999999999999999 99999999999999988765 9999
Q ss_pred CCCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccc--CCCcccEEecCccceeeEEEEeeCc-------cc
Q psy6547 140 YGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSSPANK--SKASFKLSSGGLKKSINTLILSVSA-------IL 210 (266)
Q Consensus 140 ~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~--~~~~~~~~~~g~~~~~~~~~~~~~~-------~~ 210 (266)
|.++|++++++.++|+++++++++++..+.+.+++++|.+ +.. +.+.+ ++|.|+ |+.+++.++. ..
T Consensus 312 yggnP~a~avg~aVL~Vikee~LqE~aa~vG~yl~~~l~~-l~d~h~iIGd-VRG~GL---m~GvE~V~dk~~~~pp~~~ 386 (442)
T KOG1404|consen 312 YGGNPVACAVGLAVLKVIKEENLQENAAEVGSYLLEKLAA-LKDKHPIIGD-VRGRGL---MLGVELVSDKSEPKPPATA 386 (442)
T ss_pred cCCCchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH-HhhcCCceee-ccccee---EEEEEEecccCCCCCcchH
Confidence 9999999999999999999999999999999999999999 554 66777 999999 9999987632 11
Q ss_pred hHHHHHHHHHHCCceeccC--CCCEEEEeccCCCCHHHHHHHHHHH
Q psy6547 211 EVYDVCIKMKDAGLVTKPI--SNNIIRLSPALNITEQELREGLDII 254 (266)
Q Consensus 211 ~~~~~~~~l~~~gi~~~~~--~~~~iR~~~~~~~t~~~i~~~~~~l 254 (266)
....+.++++|.|+++..+ .++.+|++|++++|++|++.+++..
T Consensus 387 ~~~~i~~~cke~Gvlvg~g~i~G~vfriaPPlciT~edi~f~~~~~ 432 (442)
T KOG1404|consen 387 EGAVIGEQCKELGVLVGKGGIHGNVFRIAPPLCITKEDIDFAVEYF 432 (442)
T ss_pred HHHHHHHHHHHhCeeeecccccceEEEecCCeeccHHHHHHHHHHH
Confidence 2445788999999999654 4579999999999999997777644
No 64
>PRK04260 acetylornithine aminotransferase; Provisional
Probab=100.00 E-value=5.5e-34 Score=248.26 Aligned_cols=239 Identities=32% Similarity=0.589 Sum_probs=207.0
Q ss_pred CcccccCCCCCCceeecCCCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcC
Q psy6547 8 TSYNEFGPHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLG 87 (266)
Q Consensus 8 ~~~~~~~~~~~~v~~~~~~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~ 87 (266)
...+.|.+..+.+..++++|++++++.+ .+++++|+++|+++++|.+.++.++++++.++|+++|+++|+||+|+|++
T Consensus 135 ~~~~~~~~~~~~~~~~~~~dl~~l~~~l--~~~~a~vi~e~v~~~~G~~~~~~~~l~~~~~l~~~~~~~~i~De~~~g~g 212 (375)
T PRK04260 135 KIKDGFGDGVPHFSYAIFNDLNSVKALV--NKNTAAVMLELVQGESGVLPADKDFVKALADYCQETGILLIVDEVQTGMG 212 (375)
T ss_pred ccCCCCCCCCCCeEEeCCCCHHHHHHhc--CCCeEEEEECCeECCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCC
Confidence 3345566655566667789999999998 34689999999999999998889999999999999999999999999998
Q ss_pred CcCcccccccCCCCcCeeeecccccCCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHhhccHHHHHH
Q psy6547 88 RTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAY 167 (266)
Q Consensus 88 ~~g~~~~~~~~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~ 167 (266)
+.|..+....+++.||+++|||++++| +|+|++++++++.+.+....+..+++++++.++++.++|+.++.+++.++++
T Consensus 213 ~~g~~~~~~~~~~~pdi~t~sK~l~~G-~~ig~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~~~~~~~~~ 291 (375)
T PRK04260 213 RTGKLYAFEHYGIEPDIFTLAKGLANG-VPVGAMLAKSSLGGAFGYGSHGSTFGGNKLSMAAASATLDIMLTAGFLEQAL 291 (375)
T ss_pred cccchhhhHhhCCCCCEEEecccccCC-cceEEEEEcHHHHhhcCCCCCCCCCCcCHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 888766666678899999999999999 9999999999999888766788899999999999999999988888899999
Q ss_pred HHHHHHHHHhhcccccC-CCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccCCCCEEEEeccCCCCHHH
Q psy6547 168 KMGEIFRSELSSPANKS-KASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQE 246 (266)
Q Consensus 168 ~~~~~l~~~l~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~iR~~~~~~~t~~~ 246 (266)
++.+.+++.+.+.+... .+.. .++.|. ++|+.+.. ++.++.++|.++||++.+.+.+.+|++++..+++++
T Consensus 292 ~~~~~~~~~l~~~~~~~~~~~~-~~~~g~---~~~~~~~~----~~~~~~~~l~~~Gi~v~~~~~~~lR~~~~~~~t~~~ 363 (375)
T PRK04260 292 ENGNYLQEQLQKALQDKETVTT-VRGLGY---MIGIETTA----DLSQLVEAARDKGLIVLTAGTNVIRLLPPLTLTKEE 363 (375)
T ss_pred HHHHHHHHHHHHHHhhCCCeeE-Eeccce---EEEEEecC----cHHHHHHHHHhCCCEEecCCCCEEEEcCCCccCHHH
Confidence 99999999998843332 2333 667888 99999854 577899999999999998877899999999999999
Q ss_pred HHHHHHHHHHH
Q psy6547 247 LREGLDIIINT 257 (266)
Q Consensus 247 i~~~~~~l~~~ 257 (266)
+++++++|+++
T Consensus 364 i~~~l~~l~~~ 374 (375)
T PRK04260 364 IEQGIAILSEV 374 (375)
T ss_pred HHHHHHHHHHh
Confidence 99999999875
No 65
>TIGR00508 bioA adenosylmethionine-8-amino-7-oxononanoate transaminase. All members of the seed alignment have been demonstrated experimentally to act as EC 2.6.1.62, an enzyme in the biotin biosynthetic pathway. Alternate names include 7,8-diaminopelargonic acid aminotransferase, DAPA aminotransferase, and adenosylmethionine-8-amino-7-oxononanoate aminotransferase. The gene symbol is bioA in E. coli and BIO3 in S. cerevisiae.
Probab=100.00 E-value=9.4e-34 Score=249.51 Aligned_cols=226 Identities=34% Similarity=0.572 Sum_probs=199.2
Q ss_pred CHHHHHHHHhcC-CCEEEEEEccc-cCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCcccccccCCCCcCe
Q psy6547 27 DVDALEAKLKSN-PNICAFMVEPI-QGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDI 104 (266)
Q Consensus 27 d~~~l~~~l~~~-~~~~~i~~~~~-~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~~~~~~~~~~d~ 104 (266)
|++++++++++. +++++|++||+ ++.+|.++++.+++++|+++|++||+++|+||+|+|+|++|..|..+.+++.||+
T Consensus 193 ~~~~l~~~l~~~~~~vaavivEPv~~g~gG~~~~~~~~l~~l~~lc~~~~~llI~DEv~tG~Gr~G~~~~~~~~~v~pDi 272 (427)
T TIGR00508 193 AITPLAKLMELHSDEIAAVILEPIVQGAGGMRFYHPTYLKRVQALCKQYDILLIADEIATGFGRTGKLFACEHAGVVPDI 272 (427)
T ss_pred HHHHHHHHHHhcCCcEEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCCccchhhhcCCCCCE
Confidence 577888888653 37999999997 8888898899999999999999999999999999999999998888889999999
Q ss_pred eeecccccCCchhhhhheecHHhhhccCCC-----CCCCCCCCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhc
Q psy6547 105 VILGKALSGGLYPISAVLADDEVMGTLVPG-----THGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSS 179 (266)
Q Consensus 105 ~~~sK~~~~g~~~~g~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~ 179 (266)
+++||+++||+++++.+++++++++.+... .+..|+.++|++++++.++|+.++++++.++++++.+++++.|++
T Consensus 273 ~~~gK~l~gG~~p~~a~~~~~~~~~~~~~~~~~~~~~~~T~~g~p~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L~~ 352 (427)
T TIGR00508 273 LCVGKALTGGYMTLSATVTTDKVAQTISSGEAGCFMHGPTFMGNPLACAVAEASLAILLEGEWQKQVSAIENQLKRELSP 352 (427)
T ss_pred EEechhhhcCcccceEEEEcHHHHHHHhcCCCCccccCCCCCcCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 999999999956999999999998887642 367889999999999999999998889999999999999999998
Q ss_pred ccccC-CCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccCCCCEEEEeccCCCCHHHHHHHHHHHHHHH
Q psy6547 180 PANKS-KASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTI 258 (266)
Q Consensus 180 ~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~iR~~~~~~~t~~~i~~~~~~l~~~~ 258 (266)
+... .+.. .++.|. ++.+.+.+ ...+..+.++|+++||++.+. .+.+|++|++.+|+++||++++++++++
T Consensus 353 -l~~~~~i~~-vrg~G~---~~~i~~~~--~~~~~~~~~~l~~~Gv~~~~~-~~~l~~~ppl~~t~~~id~~~~~l~~~l 424 (427)
T TIGR00508 353 -LRKNPVVKD-VRVLGA---IGVVEMYK--PVNVEELQKKFVEQGVWIRPF-GKLIYVMPPYIITTEQLQKLTAALIEAL 424 (427)
T ss_pred -hhcCCCEEe-Eecccc---EEEEEECC--ccCHHHHHHHHHHCCeEEEec-CCEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 5543 3443 788899 99999865 345678999999999999876 4689999999999999999999999998
Q ss_pred HH
Q psy6547 259 NT 260 (266)
Q Consensus 259 ~~ 260 (266)
++
T Consensus 425 ~~ 426 (427)
T TIGR00508 425 HE 426 (427)
T ss_pred hc
Confidence 65
No 66
>cd00610 OAT_like Acetyl ornithine aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, alanine-glyoxylate aminotransferase, dialkylglycine decarboxylase, 4-aminobutyrate aminotransferase, beta-alanine-pyruvate aminotransferase, adenosylmethionine-8-amino-7-oxononanoate aminotransferase, and glutamate-1-semialdehyde 2,1-aminomutase. All the enzymes belonging to this family act on basic amino acids and their derivatives are involved in transamination or decarboxylation.
Probab=100.00 E-value=1.1e-33 Score=249.62 Aligned_cols=247 Identities=43% Similarity=0.732 Sum_probs=210.9
Q ss_pred cCcccccCCCCCCceeecCC-----------CHHHHHHHHhcC-CCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcC
Q psy6547 7 PTSYNEFGPHMPGYNIIPYN-----------DVDALEAKLKSN-PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYN 74 (266)
Q Consensus 7 ~~~~~~~~~~~~~v~~~~~~-----------d~~~l~~~l~~~-~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g 74 (266)
+.....+.+...+++.+|++ |+++|++.++++ .++++++++|+++++|.+.++++++++|+++|++||
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~ 225 (413)
T cd00610 146 KKYRGGFGPLLPGVLHVPYPYRYRPPAELADDLEALEEALEEHPEEVAAVIVEPIQGEGGVIVPPPGYLKALRELCRKHG 225 (413)
T ss_pred ccccccCCCCCCCcEEeCCCccccchhhHHHHHHHHHHHHhcCCCCEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcC
Confidence 33445677788899999999 899999999654 378999999999999988789999999999999999
Q ss_pred CEEEEeccccCcCCcCcccccccCCCCcCeeeecccccCCchhhhhheecHHhhhcc--CCCCCCCCCCCcHHHHHHHHH
Q psy6547 75 VLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTL--VPGTHGSTYGGNPLACKLAMT 152 (266)
Q Consensus 75 ~~li~De~~~~~~~~g~~~~~~~~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~a~~~ 152 (266)
+++|+||+|+++++.|..+..+.+++.||++++||++++| +|+|++++++++++.+ ....+..++++++++++++.+
T Consensus 226 ~~li~Dev~~g~g~~g~~~~~~~~~~~~d~~t~sK~l~~g-~~~g~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~~a 304 (413)
T cd00610 226 ILLIADEVQTGFGRTGKMFAFEHFGVEPDIVTLGKGLGGG-LPLGAVLGREEIMDAFPAGPGLHGGTFGGNPLACAAALA 304 (413)
T ss_pred CEEEEeccccCCCcCcchhhHhhcCCCCCeEEEcccccCc-cccEEEEEcHHHHHhhccCCCCCCCCCCcCHHHHHHHHH
Confidence 9999999999998888766777788899999999999999 9999999999999885 455677889999999999999
Q ss_pred HHHHHhhccHHHHHHHHHHHHHHHhhccccc-CCCcccEEecCccceeeEEEEeeCc------cchHHHHHHHHHHCCce
Q psy6547 153 ALDVILEENMIENAYKMGEIFRSELSSPANK-SKASFKLSSGGLKKSINTLILSVSA------ILEVYDVCIKMKDAGLV 225 (266)
Q Consensus 153 ~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~------~~~~~~~~~~l~~~gi~ 225 (266)
+++.++.+++.++++++++++++.|++ +.. .......++.|. ++++.+.+.. ......+++.|.++||.
T Consensus 305 ~l~~l~~~~~~~~~~~~~~~l~~~l~~-~~~~~~~~~~~~~~g~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~ 380 (413)
T cd00610 305 VLEVLEEEGLLENAAELGEYLRERLRE-LAEKHPLVGDVRGRGL---MIGIELVKDRATKPPDKELAAKIIKAALERGLL 380 (413)
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHH-HHhhCCcEEEeecCce---EEEEEEecCCCcCCcchHHHHHHHHHHHHCCeE
Confidence 999998888999999999999999998 433 122222456777 9999987621 14577899999999999
Q ss_pred eccCCCCEEEEeccCCCCHHHHHHHHHHHHHHH
Q psy6547 226 TKPISNNIIRLSPALNITEQELREGLDIIINTI 258 (266)
Q Consensus 226 ~~~~~~~~iR~~~~~~~t~~~i~~~~~~l~~~~ 258 (266)
+.+.+.+.+|+++++.+|++++++++++|++++
T Consensus 381 v~~~~~~~lR~~~~~~~t~~~i~~~~~~l~~~l 413 (413)
T cd00610 381 LRPSGGNVIRLLPPLIITEEEIDEGLDALDEAL 413 (413)
T ss_pred EeecCCCEEEEECCCcCCHHHHHHHHHHHHHhC
Confidence 999877899999999999999999999998763
No 67
>COG0001 HemL Glutamate-1-semialdehyde aminotransferase [Coenzyme metabolism]
Probab=100.00 E-value=1.2e-33 Score=239.84 Aligned_cols=249 Identities=28% Similarity=0.431 Sum_probs=213.9
Q ss_pred cCcccccCCCCCCceeecCCCHHHHHHHHhcC-CCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccC
Q psy6547 7 PTSYNEFGPHMPGYNIIPYNDVDALEAKLKSN-PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTG 85 (266)
Q Consensus 7 ~~~~~~~~~~~~~v~~~~~~d~~~l~~~l~~~-~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~ 85 (266)
|.....-......+..+||||++++++++++. +++++|++||+.++.|.+.+.++|++.|+++|++||++||+||+++|
T Consensus 166 p~s~Gvp~~~a~~ti~~~yND~~al~~~~~~~g~~IAaVIvEPv~gn~g~i~p~~~Fl~~Lr~lt~e~G~lLI~DEViTG 245 (432)
T COG0001 166 PSSPGVPADVAKHTLVLPYNDLEALEEAFEEYGDDIAAVIVEPVAGNMGVVPPEPGFLEGLRELTEEHGALLIFDEVITG 245 (432)
T ss_pred CCCCCCChhhhccEEEecCCCHHHHHHHHHHcCCcEEEEEeccccCCCCCCCCCHHHHHHHHHHHHHcCcEEEEecchhh
Confidence 44444555668889999999999999999875 48999999999999999999999999999999999999999999999
Q ss_pred cCCcCcccccccCCCCcCeeeecccccCCchhhhhheecHHhhhccCC---CCCCCCCCCcHHHHHHHHHHHHHHhh-cc
Q psy6547 86 LGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVP---GTHGSTYGGNPLACKLAMTALDVILE-EN 161 (266)
Q Consensus 86 ~~~~g~~~~~~~~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~a~~~~l~~~~~-~~ 161 (266)
| |.+...+...+|+.||+.+++|.+||| +|+|.+.+++++++.+.+ ..+..|+++||++++|+.++|+.+.. ++
T Consensus 246 F-R~~~gGaq~~~gi~PDlttlGKiIGGG-lP~ga~gGr~eiM~~~~p~g~vyqaGT~sgnplamaAG~atl~~l~~~~~ 323 (432)
T COG0001 246 F-RVALGGAQGYYGVEPDLTTLGKIIGGG-LPIGAFGGRAEIMEQLAPLGPVYQAGTLSGNPLAMAAGLATLEELMTEEG 323 (432)
T ss_pred c-ccCCcccccccCcCcchhhhhhhhcCC-cceeeeccHHHHHhhhCCCCCccccCCCCCcHHHHHHHHHHHHHHHhccc
Confidence 9 666666888899999999999999999 999999999999997764 47889999999999999999999988 45
Q ss_pred HHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCc-----------cchHHHHHHHHHHCCceeccCC
Q psy6547 162 MIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSA-----------ILEVYDVCIKMKDAGLVTKPIS 230 (266)
Q Consensus 162 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-----------~~~~~~~~~~l~~~gi~~~~~~ 230 (266)
..+++.++++.|++.|++.+....++..+...|. ++.+.+.+.. .....++...|+++||++.|+.
T Consensus 324 ~y~~l~~~~~~L~~gl~~~~~~~g~~~~v~~~gs---m~~i~F~~~~~~n~~da~~sd~~~~~~~~~~~l~~GV~l~ps~ 400 (432)
T COG0001 324 VYERLDALGERLAEGLRAAAERHGIPLTVNRVGS---MFGIFFTEEGVRNYADAKRSDVERFAKFFHHLLNRGVYLAPSQ 400 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCeEEeeecc---eEEEEecCCCCCCHHHHHhhchHHHHHHHHHHHhCCcccCCcc
Confidence 8999999999999999996666777776778888 8888877621 1123456678999999999975
Q ss_pred CCEEEEeccCCCCHHHHHHHHHHHHHHHHHHh
Q psy6547 231 NNIIRLSPALNITEQELREGLDIIINTINTMA 262 (266)
Q Consensus 231 ~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~~ 262 (266)
-+..=+| ..+++++|++.+++++++++++.
T Consensus 401 ~ea~flS--~ahte~di~~~~~a~~~~~~~~~ 430 (432)
T COG0001 401 FEAGFLS--TAHTEEDIDRTLEAADEAFKELA 430 (432)
T ss_pred ccceeee--cccCHHHHHHHHHHHHHHHHHhh
Confidence 4433334 77999999999999999988764
No 68
>KOG1401|consensus
Probab=100.00 E-value=4.3e-34 Score=237.36 Aligned_cols=252 Identities=33% Similarity=0.521 Sum_probs=211.3
Q ss_pred CCccCCcCcccccCCCCCCceeecCCCHHHHHHHHhcCC-CEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEE
Q psy6547 1 MLITTDPTSYNEFGPHMPGYNIIPYNDVDALEAKLKSNP-NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIA 79 (266)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~v~~~~~~d~~~l~~~l~~~~-~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~ 79 (266)
|+.++|+...-+|.|..++|+..+|||..+++++++.+. +++++++||+++.+|..+++++++..|+++|+++|+++|+
T Consensus 166 ls~~~~s~y~~~~~p~~p~v~~~~ynd~t~l~k~~~~h~~~IaAVIvEPiqGaGG~~p~~peFl~~L~k~C~~~~vl~I~ 245 (433)
T KOG1401|consen 166 LSVTGNSKYGLPFDPIAPDVVTAEYNDSTALEKLFESHKGEIAAVIVEPIQGAGGIIPADPEFLIGLRKECDDNGVLLIF 245 (433)
T ss_pred HHhhcccccCCCCCCCCCceeecccCCHHHHHHHHHhCCCceEEEEEecccCCCCcccCCHHHHHHHHHHHhhcCceEEe
Confidence 355688888889999999999999999999999998765 7999999999999999999999999999999999999999
Q ss_pred eccccCcCCcCcccccccCCCCcCeeeecccccCCchhhhhheecHHhhhccCCCCC---CCCCCCcHHHHHHHHHHHHH
Q psy6547 80 DEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTH---GSTYGGNPLACKLAMTALDV 156 (266)
Q Consensus 80 De~~~~~~~~g~~~~~~~~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~a~~~~l~~ 156 (266)
||+++||+|.|..++.+.+++.||+.+++|.++|| +|+|++++++++++.+.+..+ ++||++||+++.++..+|+.
T Consensus 246 DEV~tG~gR~g~~~a~e~~~~~PDI~t~aK~L~gG-lPigA~~v~~kV~~~i~~~~~l~hg~Tf~gnpLacsa~~~~l~~ 324 (433)
T KOG1401|consen 246 DEVQTGLGRLGYGWAQEYFGVTPDITTVAKPLGGG-LPIGATGVRDKVAEMISPGDHLYHGGTFSGNPLACSAGIKVLDE 324 (433)
T ss_pred ehhhhCccccchHHHHHHhCcCCcceeehhhccCC-ceeEEEeehHHHHhhcCCCCccccCcccCCChhhhhHHHHHHHH
Confidence 99999999999999999999999999999999999 999999999999999987654 99999999999999999999
Q ss_pred HhhccHHHHHHHHHHHHHHHhhcccccC--CCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccCC----
Q psy6547 157 ILEENMIENAYKMGEIFRSELSSPANKS--KASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPIS---- 230 (266)
Q Consensus 157 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~--~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~---- 230 (266)
+.+++.++++.+..+.+++++.+.+... .+.. ..+.|+ ++.+.... ...++.+...+.+.++....
T Consensus 325 l~~~e~~k~vs~~~k~L~~~l~e~~~~~~~~i~g-~~grgl---~ig~~~~~----p~~~~~d~~~~~~ll~~~~~~~~~ 396 (433)
T KOG1401|consen 325 LKDPETLKNVSKIGKELRKLLDEYLKKTPNSICG-GVGRGL---VIGFEFEG----PVYKFADAAREQGLLILTLGKGLL 396 (433)
T ss_pred HcCHHHHHHHHHHHHHHHHHHHHHhccCCCceee-eeeeEE---EEEEEEee----chhhhhhhhhhhhHHHHHHhcccc
Confidence 9999999999999999999999855442 2222 256677 77777654 23334444444444433322
Q ss_pred CCEEEEec----cCCCCHHHHHHHHHHHHHHHHHH
Q psy6547 231 NNIIRLSP----ALNITEQELREGLDIIINTINTM 261 (266)
Q Consensus 231 ~~~iR~~~----~~~~t~~~i~~~~~~l~~~~~~~ 261 (266)
...+|+.| ...+++|.++++++.+.+++.++
T Consensus 397 ~~gv~i~P~~~l~~~~~~E~i~~~l~i~~~~l~~~ 431 (433)
T KOG1401|consen 397 EEGVRIAPIYLLTVEHTPEVIQRLLTILEKVLSAL 431 (433)
T ss_pred cceEEEeccccccccCcHHHHHHHHHHHHHHHHHh
Confidence 23466666 23456899999999999888764
No 69
>PRK06148 hypothetical protein; Provisional
Probab=100.00 E-value=2.3e-33 Score=268.28 Aligned_cols=228 Identities=25% Similarity=0.460 Sum_probs=200.1
Q ss_pred HHHHHHHhc----CCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCc-ccccccCCCCcC
Q psy6547 29 DALEAKLKS----NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGK-LLAIHYEDVRPD 103 (266)
Q Consensus 29 ~~l~~~l~~----~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~-~~~~~~~~~~~d 103 (266)
+++++.++. .+++++|++||+++++|.+.++++++++++++|++||+++|+||+++||||+|. .|+++.+|+.||
T Consensus 769 ~~l~~~i~~~~~~~~~iAAvI~EPv~g~gG~i~pp~~yl~~lr~lc~~~g~llI~DEVqtGfGRtG~~~~a~e~~gv~PD 848 (1013)
T PRK06148 769 ESVAEQIAAMAAKGRGPAFFIAESIPSVAGQIFLPEGYLREVYAMVRAAGGVCIADEVQVGFGRVGSHWWAFETQGVVPD 848 (1013)
T ss_pred HHHHHHHHhhhccCCceEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHhCCEEEEEecccCCCCCCCcchhhhhcCCCcc
Confidence 456666642 247999999999999999999999999999999999999999999999999996 788999999999
Q ss_pred eeeecccccCCchhhhhheecHHhhhccCCC-CCCCCCCCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhcccc
Q psy6547 104 IVILGKALSGGLYPISAVLADDEVMGTLVPG-THGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSSPAN 182 (266)
Q Consensus 104 ~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 182 (266)
+++++|++++| +|+|.+++++++++.+... .+.+||++||++++++.++|+.++++++.+++++++++++++|++...
T Consensus 849 ivt~gK~lggG-~Plgav~~~~ei~~~~~~g~~~~~Tf~gnpla~aaa~a~L~~i~~e~l~~~~~~~G~~l~~~L~~l~~ 927 (1013)
T PRK06148 849 IVTMGKPIGNG-HPMGAVVTTREIADSFDNGMEYFNTFGGNPVSCAIGLAVLDIIEDEDLQRNALEIGNYLLAGLRELQD 927 (1013)
T ss_pred eeeecccccCC-cceEEEEEcHHHHhhccCCCccccCCCCCHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999 9999999999999888654 378999999999999999999999999999999999999999998333
Q ss_pred c-CCCcccEEecCccceeeEEEEeeCc------cchHHHHHHHHHHCCceeccCC--CCEEEEeccCCCCHHHHHHHHHH
Q psy6547 183 K-SKASFKLSSGGLKKSINTLILSVSA------ILEVYDVCIKMKDAGLVTKPIS--NNIIRLSPALNITEQELREGLDI 253 (266)
Q Consensus 183 ~-~~~~~~~~~~g~~~~~~~~~~~~~~------~~~~~~~~~~l~~~gi~~~~~~--~~~iR~~~~~~~t~~~i~~~~~~ 253 (266)
. ..+.. +++.|+ |+.+++..+. ......+++.|+++||++.+.+ .+.+||.|++.+|++++|+++++
T Consensus 928 ~~~~i~~-VrG~Gl---~~gvel~~~~~~~~~~~~~~~~i~~~~~~~Gvl~~~~g~~~~vlr~~Ppl~it~~~id~~l~~ 1003 (1013)
T PRK06148 928 RFDIIGD-VRGMGL---FLGIELVTDRKTKAPATAIARYVKNGARERGILIGTEGPHDNVLKIRPPLIFSRADADHLLEV 1003 (1013)
T ss_pred hCCCceE-Eeeece---EEEEEecCCccccCccHHHHHHHHHHHHhCCeEEeccCCCCCEEEEeCCccCCHHHHHHHHHH
Confidence 3 34444 999999 9999986421 1125678899999999998754 48999999999999999999999
Q ss_pred HHHHHHHH
Q psy6547 254 IINTINTM 261 (266)
Q Consensus 254 l~~~~~~~ 261 (266)
|++++++.
T Consensus 1004 l~~~l~~~ 1011 (1013)
T PRK06148 1004 LDDVLAAA 1011 (1013)
T ss_pred HHHHHHHH
Confidence 99999874
No 70
>TIGR00699 GABAtrns_euk 4-aminobutyrate aminotransferase, eukaryotic type. Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase.
Probab=100.00 E-value=1.9e-33 Score=247.70 Aligned_cols=219 Identities=26% Similarity=0.353 Sum_probs=187.0
Q ss_pred CHHHHHHHHhcC-CCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCcccccccCCCC--cC
Q psy6547 27 DVDALEAKLKSN-PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVR--PD 103 (266)
Q Consensus 27 d~~~l~~~l~~~-~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~~~~~~~~~--~d 103 (266)
++++++++++++ +++++|++||+++++|.+.++++++++|+++|++||+++|+||+++||+++|..|+++.+|+. ||
T Consensus 237 ~l~~l~~~l~~~~~~iAAvI~EPv~g~~G~~~~~~~yl~~lr~lc~~~g~lLI~DEV~tGfGrtG~~fa~e~~gv~~~PD 316 (464)
T TIGR00699 237 CLEEVEDLIKKWHKPVAAIIVEPIQSEGGDNHASPDFFRKLRDITKKHNVAFIVDEVQTGVGATGKFWAHEHWNLDDPPD 316 (464)
T ss_pred HHHHHHHHHHhcCCcEEEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeeeeeCCCCCcchhHHHhcCCCCCCC
Confidence 356788888653 479999999999999999999999999999999999999999999999999998899999987 99
Q ss_pred eeeeccccc-CCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhcccc
Q psy6547 104 IVILGKALS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSSPAN 182 (266)
Q Consensus 104 ~~~~sK~~~-~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 182 (266)
++++||+++ +| +. +.. +.+.......+.+|++++|++++++.++|+.++++++.+++++..++++++|++ +.
T Consensus 317 i~t~gK~lg~gG-~~----~~~-~~~~~~~~~~~~~T~~gnp~~~aaa~a~L~~l~~~~l~~~~~~~g~~l~~~L~~-l~ 389 (464)
T TIGR00699 317 MVTFSKKFQTAG-YF----FHD-PAFRPNKPYRQFNTWMGDPSRALILREIIQEIKRKDLLENVAHVGDYLYTGLED-LQ 389 (464)
T ss_pred EEEehhhhccCC-cc----ccc-hhccCCCCcccccCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH-HH
Confidence 999999996 67 42 222 222222234688999999999999999999999999999999999999999998 54
Q ss_pred --cC-CCcccEE--ecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccCCCCEEEEeccCCCCHHHHHHHHHHHHHH
Q psy6547 183 --KS-KASFKLS--SGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINT 257 (266)
Q Consensus 183 --~~-~~~~~~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~iR~~~~~~~t~~~i~~~~~~l~~~ 257 (266)
.+ .+.. ++ +.|+ |+.+++++ ...+..+.+.++++|+++.+.+.+.+||+|++.+|++++++++++|+++
T Consensus 390 ~~~~~~i~~-vRg~G~Gl---m~gie~~~--~~~~~~i~~~~~~~Gvl~~~~g~~~ir~~Ppl~it~~eid~~~~~l~~~ 463 (464)
T TIGR00699 390 KKYPEFIQN-LRGKGRGT---FIAWDTPD--EAKRDKLLKKARNNGVNIGGCGVKAIRLRPMLVFQKHHADIFLEIISKI 463 (464)
T ss_pred HhCCCceee-ecccCeEE---EEEEecCC--HHHHHHHHHHHHHCCcEEecCCCCeEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 23 3444 77 8899 99999865 3346789999999999999876789999999999999999999999876
Q ss_pred H
Q psy6547 258 I 258 (266)
Q Consensus 258 ~ 258 (266)
+
T Consensus 464 ~ 464 (464)
T TIGR00699 464 I 464 (464)
T ss_pred C
Confidence 3
No 71
>PRK12389 glutamate-1-semialdehyde aminotransferase; Provisional
Probab=100.00 E-value=3.8e-33 Score=246.06 Aligned_cols=238 Identities=25% Similarity=0.376 Sum_probs=198.7
Q ss_pred CCCCCceeecCCCHHHHHHHHhcC-CCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCccc
Q psy6547 15 PHMPGYNIIPYNDVDALEAKLKSN-PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLL 93 (266)
Q Consensus 15 ~~~~~v~~~~~~d~~~l~~~l~~~-~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~ 93 (266)
+..+++..+++||++++++.++++ .++++|++||+++++|.+.++++++++|+++|++||+++|+||+++|| |++..+
T Consensus 174 ~~~~~~~~~~~~d~~~l~~~l~~~~~~vaavi~EPv~g~~G~~~p~~~yl~~l~~lc~~~g~llI~DEV~tG~-Rt~~~~ 252 (428)
T PRK12389 174 SIAQEVITVPFNDIEALKEALDKWGDEVAAVLVEPIVGNFGIVEPKPGFLEAVNELAHEAGALVIYDEVITAF-RFMYGG 252 (428)
T ss_pred cccCceEEcCCCCHHHHHHHHHhcCCcEEEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEEcccccc-ccCcch
Confidence 445789999999999999999654 379999999999999999999999999999999999999999999999 887766
Q ss_pred ccccCCCCcCeeeecccccCCchhhhhheecHHhhhccCC---CCCCCCCCCcHHHHHHHHHHHHHHhhccHHHHHHHHH
Q psy6547 94 AIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVP---GTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMG 170 (266)
Q Consensus 94 ~~~~~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~ 170 (266)
+.+.+++.||+++++|++++| +|+|.+++++++++.+.. ..+.+||++||+++++++++|+.++++++.++++++.
T Consensus 253 a~~~~gv~PDivt~gK~lggG-~Pi~av~~~~~i~~~~~~~~~~~~~~T~~gnpl~~Aaala~L~~l~~~~l~~~~~~~g 331 (428)
T PRK12389 253 AQDLLGVEPDLTALGKIIGGG-LPIGAYGGRKDIMEQVAPLGPAYQAGTMAGNPASMAAGIACLEVLQQEGVYEKLDRLG 331 (428)
T ss_pred hhHHhCCCCCeeeechhhcCC-CceeEEeEHHHHHhhhccCCCcccccCCccCHHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 777789999999999999999 999999999999988753 3578899999999999999999999889999999999
Q ss_pred HHHHHHhhcccccCCCcccE-EecCccceeeEEEEeeCc-----------cchHHHHHHHHHHCCceeccCCCCEEEEec
Q psy6547 171 EIFRSELSSPANKSKASFKL-SSGGLKKSINTLILSVSA-----------ILEVYDVCIKMKDAGLVTKPISNNIIRLSP 238 (266)
Q Consensus 171 ~~l~~~l~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~-----------~~~~~~~~~~l~~~gi~~~~~~~~~iR~~~ 238 (266)
+++++.|+++.....+.... ++.| ++.+.+.... ......+.+.|.++||++.+.+.+.+ .|
T Consensus 332 ~~l~~~L~~l~~~~~~~~~v~r~~g----~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~--~~ 405 (428)
T PRK12389 332 AMLEEGILEAAEKHGITITINRLKG----ALTVYFTDEKVTNYDQAERSDGEAFGKFFKLMLNQGINLAPSKYEAW--FL 405 (428)
T ss_pred HHHHHHHHHHHHhCCCCEEEEecCc----EEEEEEeCCCCCChhhhcccCHHHHHHHHHHHHHCCcEeecCCCCCe--ee
Confidence 99999999832322222224 3344 4566664311 01245788899999999988644443 46
Q ss_pred cCCCCHHHHHHHHHHHHHHHHH
Q psy6547 239 ALNITEQELREGLDIIINTINT 260 (266)
Q Consensus 239 ~~~~t~~~i~~~~~~l~~~~~~ 260 (266)
++.+|+++++++++++++++++
T Consensus 406 ~l~~t~e~id~~~~~l~~~l~~ 427 (428)
T PRK12389 406 TTAHTEEDIEETLEAVDRAFAQ 427 (428)
T ss_pred cCCCCHHHHHHHHHHHHHHHHh
Confidence 7999999999999999999865
No 72
>PLN02974 adenosylmethionine-8-amino-7-oxononanoate transaminase
Probab=100.00 E-value=2.5e-33 Score=259.88 Aligned_cols=225 Identities=26% Similarity=0.421 Sum_probs=189.6
Q ss_pred HHHHHHHhc------CCCEEEEEEccc-cCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCcccccccCCCC
Q psy6547 29 DALEAKLKS------NPNICAFMVEPI-QGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVR 101 (266)
Q Consensus 29 ~~l~~~l~~------~~~~~~i~~~~~-~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~~~~~~~~~ 101 (266)
+.+++.|++ .+++++|++||+ ++.+|+++++++++++++++|++||+++|+||+++||||+|..|+.+.+|+.
T Consensus 567 ~~le~~l~~~~~~~~~~~iAAvI~EPviqGaGGmi~~~~~yl~~lr~lc~~~gilLI~DEV~TGfGRtG~~fa~e~~gv~ 646 (817)
T PLN02974 567 SYIEQQLDEYEASAKNGHIAALIIEPVLHGAGGMLLIDPLFQRALVQVCRSRKIPVIFDEVFTGLWRLGVESAWELLGCK 646 (817)
T ss_pred HHHHHHHHhhccccCCCCEEEEEEeccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeecccCCCcccchhhHHhcCCC
Confidence 557777753 347999999995 8999999999999999999999999999999999999999999999999999
Q ss_pred cCeeeecccccCCchhhhhheecHHhhhccCC------CCCCCCCCCcHHHHHHHHHHHHHHhhccHHHHH----HHHHH
Q psy6547 102 PDIVILGKALSGGLYPISAVLADDEVMGTLVP------GTHGSTYGGNPLACKLAMTALDVILEENMIENA----YKMGE 171 (266)
Q Consensus 102 ~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~----~~~~~ 171 (266)
||+++++|+++||++|+|.+++++++++.+.. ..|++||++||++++++.++|+.++++++.+++ .++.+
T Consensus 647 PDIi~~gKgLtgG~~Plaa~l~~~~I~~~f~~~~~~~~~~hg~Ty~gnpl~cAaala~L~~~~~~~~~~~l~~~~~~l~~ 726 (817)
T PLN02974 647 PDIACYAKLLTGGLVPLAATLATEEVFEAFRGPSKLDALLHGHSYTAHPMGCAAAAKALQWYKDPSTNPNLIPPGSRLRE 726 (817)
T ss_pred CCEEeecccccCCCCccEEEEEcHHHHHhhccccccCCcccCCCCCcCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 99999999999997799999999999988752 258899999999999999999999987555554 44555
Q ss_pred HHHHHhhccccc-CCCcccEEecCccceeeEEEEeeCcc------chHHHHHHHHH-HCCceeccCCCCEEEEeccCCCC
Q psy6547 172 IFRSELSSPANK-SKASFKLSSGGLKKSINTLILSVSAI------LEVYDVCIKMK-DAGLVTKPISNNIIRLSPALNIT 243 (266)
Q Consensus 172 ~l~~~l~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~------~~~~~~~~~l~-~~gi~~~~~~~~~iR~~~~~~~t 243 (266)
++.+.|.+.+.. +.+.. +++.|+ |+.+++.++.. .-+..+++.++ ++|+++++. ++.+++.++..++
T Consensus 727 ~l~~~l~~~l~~~p~V~~-VRg~Gl---~~~iel~~~~~~~~~~~~~a~~v~~~~~~~~Gl~~r~~-Gnvi~l~pP~~i~ 801 (817)
T PLN02974 727 LWDEELVRAISSLPNVER-VVSLGT---VLALELDAEGSGSGYSSLYARSVVRRLRREDGIYARPL-GNVVYLMCGPTTS 801 (817)
T ss_pred HHHHHHHHHHhhCCCeeE-EEeeee---EEEEEEecCCcccccchHHHHHHHHHHHHhCCEEEEec-CCEEEEeCCCCCC
Confidence 555566321333 45666 999999 99999975321 12457888888 999999997 4799999999999
Q ss_pred HHHHHHHHHHHHHHH
Q psy6547 244 EQELREGLDIIINTI 258 (266)
Q Consensus 244 ~~~i~~~~~~l~~~~ 258 (266)
+++++++++.|.+.+
T Consensus 802 ~e~l~~~~~~l~~~~ 816 (817)
T PLN02974 802 PETCTRLLRKVYRRL 816 (817)
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999998875
No 73
>TIGR00707 argD acetylornithine and succinylornithine aminotransferases. Members of this family may also act on ornithine, like ornithine aminotransferase (EC 2.6.1.13) (see MEDLINE:90337349) and on succinyldiaminopimelate, like N-succinyldiaminopmelate-aminotransferase (EC 2.6.1.17, DapC, an enzyme of lysine biosynthesis) (see MEDLINE:99175097)
Probab=100.00 E-value=5.2e-33 Score=242.61 Aligned_cols=234 Identities=38% Similarity=0.688 Sum_probs=200.6
Q ss_pred ccCCCCCCceeecCCCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCc
Q psy6547 12 EFGPHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGK 91 (266)
Q Consensus 12 ~~~~~~~~v~~~~~~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~ 91 (266)
.+.|...++..++++|++++++.+. +++++|+++|+++++|.+.++.+++++|.++|++||+++|+||+|++|++.|.
T Consensus 144 ~~~~~~~~~~~~~~~d~~~l~~~~~--~~~~~v~~~p~~~~~g~~~~~~~~l~~i~~l~~~~~~~~i~De~~~~~~~~g~ 221 (379)
T TIGR00707 144 GFEPLVPGFSYAPYNDIESLKKAID--DETAAVIVEPIQGEGGVNPASAEFLKALREICKDKDALLIFDEVQTGIGRTGK 221 (379)
T ss_pred cCCCCCCCceeeCCCCHHHHHHHhh--hCeeEEEEEccccCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccch
Confidence 4566777888899999999999993 46899999999888887778999999999999999999999999998877765
Q ss_pred ccccccCCCCcCeeeecccccCCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHhhccHHHHHHHHHH
Q psy6547 92 LLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGE 171 (266)
Q Consensus 92 ~~~~~~~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~ 171 (266)
.+.....++.+|++++||++++| +|+||+++++++++.+.......+++.++++++++.++|+.++.+++.++++++++
T Consensus 222 ~~~~~~~~~~~d~~t~sK~~~~G-~riG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~aaL~~~~~~~~~~~~~~~~~ 300 (379)
T TIGR00707 222 FFAYEHYGIEPDIITLAKGLGGG-VPIGATLAKEEVAEAFTPGDHGSTFGGNPLACAAALAVLEVIEKERLLENVKEKGD 300 (379)
T ss_pred hhhHHhcCCCCCEEEEcccccCC-cccEEEEEcHHHHhhhcCCCCCCCCCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 44445567789999999999999 99999999999998888766777888999999999999998877778999999999
Q ss_pred HHHHHhhccccc-CCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccCCCCEEEEeccCCCCHHHHHHH
Q psy6547 172 IFRSELSSPANK-SKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREG 250 (266)
Q Consensus 172 ~l~~~l~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~iR~~~~~~~t~~~i~~~ 250 (266)
+++++|++ +.. ..+.. .++.|. ++++.+++ ++.+++++|.++||.+.|.+.+++|++++..+++++++++
T Consensus 301 ~~~~~l~~-~~~~~~~~~-~~~~g~---~~~~~~~~----~~~~~~~~l~~~Gv~v~~~~~~~lRi~~~~~~t~~~i~~~ 371 (379)
T TIGR00707 301 YFKERLEE-LGKNYPNKE-VRGKGL---MLGIELEA----PCKDIVKKALEKGLLVNCAGPKVLRFLPPLIITKEEIDEA 371 (379)
T ss_pred HHHHHHHH-HHhhCCCCc-cccCce---EEEEEecC----cHHHHHHHHHHCCcEEeeCCCCEEEEECCCcCCHHHHHHH
Confidence 99999987 432 22222 445677 89998866 4678999999999999998778999999998999999999
Q ss_pred HHHHHHH
Q psy6547 251 LDIIINT 257 (266)
Q Consensus 251 ~~~l~~~ 257 (266)
+++|+++
T Consensus 372 ~~~l~~~ 378 (379)
T TIGR00707 372 VSALEEA 378 (379)
T ss_pred HHHHHHh
Confidence 9999875
No 74
>PRK00615 glutamate-1-semialdehyde aminotransferase; Provisional
Probab=100.00 E-value=1.3e-32 Score=241.87 Aligned_cols=241 Identities=23% Similarity=0.357 Sum_probs=200.7
Q ss_pred CCCCCCceeecCCCHHHHHHHHhcC-CCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCcc
Q psy6547 14 GPHMPGYNIIPYNDVDALEAKLKSN-PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKL 92 (266)
Q Consensus 14 ~~~~~~v~~~~~~d~~~l~~~l~~~-~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~ 92 (266)
.+....+..++|||++++++.+++. +++++|++||+++++|.+.++++++++|+++|++||+++|+||+++|| |+|..
T Consensus 174 ~~~~~~~~~~~~~d~~~l~~~l~~~~~~~aavI~Epv~~~~G~~~p~~~yl~~l~~lc~~~g~llI~DEv~tG~-R~G~~ 252 (433)
T PRK00615 174 DLAHPLTLSLPYNDFQIFQTVMNSLGHRVAGVIFEPICANMGVVLPKPGFIEGIIQTCRRTGSLSIMDEVVTGF-RVAQG 252 (433)
T ss_pred CCCCCCeEeCCCCCHHHHHHHHHhcCCceEEEEECCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEEcccccc-cccHh
Confidence 3445566788999999999999653 479999999999999999999999999999999999999999999999 88887
Q ss_pred cccccCCCCcCeeeecccccCCchhhhhheecHHhhhccCC---CCCCCCCCCcHHHHHHHHHHHHHHhhccHHHHHHHH
Q psy6547 93 LAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVP---GTHGSTYGGNPLACKLAMTALDVILEENMIENAYKM 169 (266)
Q Consensus 93 ~~~~~~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~ 169 (266)
++.+.+++.||++++||++++| +|+|++++++++++.+.. ..+.+|++++|+++++++++|+.++++++.++++++
T Consensus 253 ga~~~~gv~PDi~~~gK~lggG-~p~~av~~~~~i~~~~~~~~~~~~~~T~~g~p~~~aa~la~L~~i~~~~~~~~~~~~ 331 (433)
T PRK00615 253 GAAAIYHVKPDITVYGKILGGG-LPAAAVVAHKSIMDHLAPEGTIFQAGTLSGNPLAMAAGKASINLCREQGFYTQLSTL 331 (433)
T ss_pred HHHHhcCCCCCeEEEcccccCC-cceeeeeecHHHHhhhcCCCCcccCCCCcccHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 7888889999999999999999 899999999999988753 246789999999999999999999988899999999
Q ss_pred HHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCc-----------cchHHHHHHHHHHCCceeccCCCCEEEEec
Q psy6547 170 GEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSA-----------ILEVYDVCIKMKDAGLVTKPISNNIIRLSP 238 (266)
Q Consensus 170 ~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-----------~~~~~~~~~~l~~~gi~~~~~~~~~iR~~~ 238 (266)
.+++.++|++++....++......|. ++.+.+.+.. ......+.++|.++||++.+...... .+
T Consensus 332 g~~l~~~l~~~~~~~g~~v~~~r~G~---~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~--~l 406 (433)
T PRK00615 332 EQNFLSPIEEMIRSQGFPVSLVRYGS---MFSFFFNENRPNNLAEAQLSDIEAFQTFYQSAFSKGVYLSPSPFEAS--FL 406 (433)
T ss_pred HHHHHHHHHHHHHHcCCCeEEEeece---EEEEEEeCCCCCChHHHhhCCHHHHHHHHHHHHHCCeeecCcccccc--ce
Confidence 99999999884443332221223788 9999986521 01244789999999999987633221 34
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHH
Q psy6547 239 ALNITEQELREGLDIIINTINTM 261 (266)
Q Consensus 239 ~~~~t~~~i~~~~~~l~~~~~~~ 261 (266)
+..+|++|||++++.+++++++.
T Consensus 407 s~~ht~~did~~~~a~~~~~~~~ 429 (433)
T PRK00615 407 SSAHSMENLDYAQNVLIDSLEKV 429 (433)
T ss_pred ecCCCHHHHHHHHHHHHHHHHHH
Confidence 46799999999999999999875
No 75
>PLN02482 glutamate-1-semialdehyde 2,1-aminomutase
Probab=100.00 E-value=8.1e-33 Score=245.02 Aligned_cols=235 Identities=23% Similarity=0.347 Sum_probs=195.5
Q ss_pred CCceeecCCCHHHHHHHHhcC-CCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCcccccc
Q psy6547 18 PGYNIIPYNDVDALEAKLKSN-PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIH 96 (266)
Q Consensus 18 ~~v~~~~~~d~~~l~~~l~~~-~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~~~~ 96 (266)
.+++.++|||+++++++++++ +++++|++||+++++|.+.++++++++|+++|++||+++|+||+++|| +.|..++.+
T Consensus 223 ~~~~~~~~nd~~~l~~~l~~~~~~iAavI~Epv~g~~G~i~p~~~fl~~lr~lc~~~g~lLI~DEV~tGf-R~g~~ga~~ 301 (474)
T PLN02482 223 SATLTAPYNDLEAVKKLFEANKGEIAAVILEPVVGNSGFIVPKKEFLEGLREITKENGALLVFDEVMTGF-RIAYGGAQE 301 (474)
T ss_pred CCeEEecCCChHHHHHHHHhCCCceEEEEECCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCe-ecCcchHhH
Confidence 467889999999999999754 379999999999999999889999999999999999999999999999 888877888
Q ss_pred cCCCCcCeeeecccccCCchhhhhheecHHhhhccCC---CCCCCCCCCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHH
Q psy6547 97 YEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVP---GTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIF 173 (266)
Q Consensus 97 ~~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l 173 (266)
.+|+.||+++++|+++|| +|+|.+++++++++.+.. ..+.+||+++|++++++.++|+.++++++.+++.++.+++
T Consensus 302 ~~gv~PDi~t~gK~lggG-~Pigav~g~~ei~~~~~~~~~~~~~~T~~gnpl~~aAala~L~~l~~~~~~~~~~~~g~~l 380 (474)
T PLN02482 302 YFGITPDLTTLGKVIGGG-LPVGAYGGRREIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLQQPGTYEYLDKITKKL 380 (474)
T ss_pred HhCCCCCEEEecchhhCC-CceEEEEEcHHHHHhhccCCCcccccCcchhHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 899999999999999999 999999999999988753 3577899999999999999999998889999999999999
Q ss_pred HHHhhccccc-CCCcccEEecCccceeeEEEEeeCc-----------cchHHHHHHHHHHCCceeccCCCCEEEEeccCC
Q psy6547 174 RSELSSPANK-SKASFKLSSGGLKKSINTLILSVSA-----------ILEVYDVCIKMKDAGLVTKPISNNIIRLSPALN 241 (266)
Q Consensus 174 ~~~l~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~-----------~~~~~~~~~~l~~~gi~~~~~~~~~iR~~~~~~ 241 (266)
+++|++ +.. ...+......+. ++.+.+.... ......+.+.|+++||++.+.+... + .+++.
T Consensus 381 ~~~L~~-l~~~~g~~~~~~~v~g---~~gi~f~~~~~~~~~~~~~~d~~~~~~~~~~l~~~Gv~~~~~~~~~-~-~psl~ 454 (474)
T PLN02482 381 IQGILE-AGKKAGHEMCGGYISG---MFGFFFTEGPVYNFADAKKSDTAKFARFHRGMLEEGVYLAPSQFEA-G-FTSLA 454 (474)
T ss_pred HHHHHH-HHHhcCCCEEEcccce---EEEEEEecCCccChhhhccCCHHHHHHHHHHHHHCCeEEeccCCCC-C-cCCCC
Confidence 999998 433 223321122233 5666554310 1124568889999999998753321 1 37899
Q ss_pred CCHHHHHHHHHHHHHHHHH
Q psy6547 242 ITEQELREGLDIIINTINT 260 (266)
Q Consensus 242 ~t~~~i~~~~~~l~~~~~~ 260 (266)
+|++|||++++++++++.+
T Consensus 455 ht~~dId~~l~al~~~l~~ 473 (474)
T PLN02482 455 HTEEDIDFTIAAAERVLAR 473 (474)
T ss_pred CCHHHHHHHHHHHHHHHHh
Confidence 9999999999999999865
No 76
>TIGR00713 hemL glutamate-1-semialdehyde-2,1-aminomutase. This enzyme, glutamate-1-semialdehyde-2,1-aminomutase (glutamate-1-semialdehyde aminotransferase, GSA aminotransferase), contains a pyridoxal phosphate attached at a Lys residue at position 283 of the seed alignment. It is in the family of class III aminotransferases.
Probab=100.00 E-value=7.3e-33 Score=244.81 Aligned_cols=236 Identities=28% Similarity=0.425 Sum_probs=197.4
Q ss_pred CCceeecCCCHHHHHHHHhcC-CCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCcccccc
Q psy6547 18 PGYNIIPYNDVDALEAKLKSN-PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIH 96 (266)
Q Consensus 18 ~~v~~~~~~d~~~l~~~l~~~-~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~~~~ 96 (266)
+.++.++++|+++++++++++ +++++|++||+++++|.+..+++++++|+++|++||+++|+||+|+|| ++|..+...
T Consensus 172 ~~~~~~~~~d~~~l~~~i~~~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~-r~g~~~~~~ 250 (423)
T TIGR00713 172 KLTLVLPYNDLEALEEVFEEYGEEIAGVIVEPVAGNMGVVPPKPEFLAGLRALTEEYGSLLIFDEVMTGF-RVALGGAQE 250 (423)
T ss_pred cceEEeCCCCHHHHHHHHHHcCCcEEEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHhCCEEEEEcccccc-ccCcchhHH
Confidence 457889999999999999653 478999999999999988667899999999999999999999999999 777666666
Q ss_pred cCCCCcCeeeecccccCCchhhhhheecHHhhhccCC---CCCCCCCCCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHH
Q psy6547 97 YEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVP---GTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIF 173 (266)
Q Consensus 97 ~~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l 173 (266)
.+++.||+++|||++++| +|+||+++++++++.+.. ..+.+|+++++++++++.++|+.++++++.+++++..+++
T Consensus 251 ~~~~~pDi~t~sK~l~~G-~pig~v~~~~~i~~~~~~~~~~~~~~T~~~~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~~ 329 (423)
T TIGR00713 251 YFGVEPDLTTLGKIIGGG-LPVGAFGGRREIMERLAPEGPVYQAGTLSGNPLAMAAGLATLKLLDEEGVYTELDELAKRL 329 (423)
T ss_pred HhCCCcchhhhhhhhcCC-CceeeeeEHHHHHHhhCcCCCeeeccCCCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 778999999999999999 999999999999988863 3467899999999999999999998888999999999999
Q ss_pred HHHhhcccccCCCcccEEecCccceeeEEEEeeCc-----------cchHHHHHHHHHHCCceeccCCCCEEEEeccCCC
Q psy6547 174 RSELSSPANKSKASFKLSSGGLKKSINTLILSVSA-----------ILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNI 242 (266)
Q Consensus 174 ~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-----------~~~~~~~~~~l~~~gi~~~~~~~~~iR~~~~~~~ 242 (266)
++.|.+.+....+...+++.|. ++.+.+.... ......+++.|.++||++.+.+.+.+|++++ +
T Consensus 330 ~~~l~~~~~~~~~~~~v~~~g~---~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~l~~~--~ 404 (423)
T TIGR00713 330 AEGLSEVLEDTGIPHTVNRVGS---MFSLFFTEEEVTNYADAKKSDTELFAKFFHEMLDKGVFLPPSQFEACFLSAA--H 404 (423)
T ss_pred HHHHHHHHHhcCCCeEEEeecc---EEEEEEecCCCCChhhhhcccHHHHHHHHHHHHHCCeEEecCCccceeeECC--C
Confidence 9988874443333333677888 8888775311 0123468889999999998765577899865 7
Q ss_pred CHHHHHHHHHHHHHHHHH
Q psy6547 243 TEQELREGLDIIINTINT 260 (266)
Q Consensus 243 t~~~i~~~~~~l~~~~~~ 260 (266)
|++++++++++|++++++
T Consensus 405 t~~~i~~~~~~l~~~l~~ 422 (423)
T TIGR00713 405 TEEDIENTIEAAEEVFAE 422 (423)
T ss_pred CHHHHHHHHHHHHHHHhh
Confidence 999999999999998865
No 77
>PRK08297 L-lysine aminotransferase; Provisional
Probab=100.00 E-value=4.7e-33 Score=245.82 Aligned_cols=225 Identities=29% Similarity=0.476 Sum_probs=190.0
Q ss_pred CHHHHHHHHhcC-CCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCcccccccCCCCcCee
Q psy6547 27 DVDALEAKLKSN-PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIV 105 (266)
Q Consensus 27 d~~~l~~~l~~~-~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~~~~~~~~~~d~~ 105 (266)
++++++++++++ +++++|++||+++++|.++++++++++|+++|++||+++|+||+++|||++|..|+++.+++.||++
T Consensus 211 ~~~~~~~~i~~~~~~iAavI~EPi~g~~G~~~pp~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~a~~~~gv~PDiv 290 (443)
T PRK08297 211 ALAQARAAFERHPHDIACFIAEPIQGEGGDNHFRPEFFAAMRELCDEHDALLIFDEVQTGVGLTGTAWAYQQLGVRPDIV 290 (443)
T ss_pred HHHHHHHHHHhCCCcEEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhccCccchHHHHHhcCCCCCEE
Confidence 456777888654 4899999999999999999999999999999999999999999999999999988988899999999
Q ss_pred eecccccCCchhhhhheecHHhhhc----cC-CCCCCCCCCCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhcc
Q psy6547 106 ILGKALSGGLYPISAVLADDEVMGT----LV-PGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSSP 180 (266)
Q Consensus 106 ~~sK~~~~g~~~~g~~~~~~~~~~~----~~-~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~ 180 (266)
+++|+++ +|.++...++.+. +. ...+.+|+++||++++++.++|+.++++++.++++++.++++++|+++
T Consensus 291 ~~gK~l~-----~~a~l~~~~i~~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~L~~l~~~~l~~~~~~~g~~l~~~L~~l 365 (443)
T PRK08297 291 AFGKKTQ-----VCGIMAGRRVDEVEDNVFAVSSRINSTWGGNLVDMVRARRILEVIEEDGLVENAARQGEYLLARLEEL 365 (443)
T ss_pred Eeccccc-----ccceecchHHHHhhhhhccCccccCCCCCccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH
Confidence 9999985 2223344433221 11 235889999999999999999999999999999999999999999983
Q ss_pred ccc-CCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccCCCCEEEEeccCCCCHHHHHHHHHHHHHHHH
Q psy6547 181 ANK-SKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTIN 259 (266)
Q Consensus 181 ~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~ 259 (266)
... +.+...+++.|. ++.+.+.+ ......+++.|.++||++.+.+.+.+|++|++.+|++++++++++|++++.
T Consensus 366 ~~~~~~~~~~vrg~G~---~~~i~~~~--~~~~~~~~~~l~~~Gvl~~~~~~~~lr~~P~l~~t~~eid~~l~~l~~~l~ 440 (443)
T PRK08297 366 AAEFPAVVSNVRGRGL---MCAFDLPT--TADRDEVIRRLWEEGVLVLPCGERSIRFRPALTVTTEEIDAAIDALRRALP 440 (443)
T ss_pred HHHCCCcceeeeccce---EEEEEecC--HHHHHHHHHHHHHCCEEEecCCCCeEEEECCccCCHHHHHHHHHHHHHHHH
Confidence 332 334323889999 99999965 334678999999999999988778999999999999999999999999987
Q ss_pred HH
Q psy6547 260 TM 261 (266)
Q Consensus 260 ~~ 261 (266)
++
T Consensus 441 ~~ 442 (443)
T PRK08297 441 EV 442 (443)
T ss_pred hh
Confidence 64
No 78
>PRK08088 4-aminobutyrate aminotransferase; Validated
Probab=100.00 E-value=3e-32 Score=240.60 Aligned_cols=248 Identities=30% Similarity=0.549 Sum_probs=208.6
Q ss_pred cccccCCCCCCceeecCC----C------HHHHHHHHhc---CCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCC
Q psy6547 9 SYNEFGPHMPGYNIIPYN----D------VDALEAKLKS---NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNV 75 (266)
Q Consensus 9 ~~~~~~~~~~~v~~~~~~----d------~~~l~~~l~~---~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~ 75 (266)
....|.+...++..++++ + +++|++++++ .+++++|++||+++++|.+.++++++++|+++|++||+
T Consensus 155 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~~l~~~~~~~~~aavi~Epi~~~~G~~~~~~~~~~~l~~l~~~~~~ 234 (425)
T PRK08088 155 YSAGMGLMPGHVYRALYPCPLHGVSEDDAIASIERIFKNDAAPEDIAAIIIEPVQGEGGFYAASPAFMQRLRALCDEHGI 234 (425)
T ss_pred cccCCCCCCCCcEEcCCCccccCccHHHHHHHHHHHHHhccCCCceEEEEECcccCCCCCcCCCHHHHHHHHHHHHHcCC
Confidence 345566666666655533 1 5678888852 24799999999999999999999999999999999999
Q ss_pred EEEEeccccCcCCcCcccccccCCCCcCeeeecccccCCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHHHH
Q psy6547 76 LFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALD 155 (266)
Q Consensus 76 ~li~De~~~~~~~~g~~~~~~~~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~ 155 (266)
++|+||+|+++++.|..++++..++.||+.+|||++++| +|+||+++++++++.+....+..+++++++.++++.++|+
T Consensus 235 ~lI~Dev~~g~g~~g~~~~~~~~~~~pdi~s~sK~l~~G-~rig~v~~~~~~~~~~~~~~~~~t~~~~~~~~~a~~~~l~ 313 (425)
T PRK08088 235 MLIADEVQTGAGRTGTLFAMEQMGVAADLTTFAKSIAGG-FPLAGVTGRAEVMDAIAPGGLGGTYAGNPIACAAALAVLK 313 (425)
T ss_pred EEEEeccccCCCcCcchhHHhhcCCCCCEEEEeccccCC-CcceeeEecHHHHhhcCCCCCCCCCCcCHHHHHHHHHHHH
Confidence 999999999998888776776778999999999999999 9999999999999998887888999999999999999999
Q ss_pred HHhhccHHHHHHHHHHHHHHHhhccccc-CCCcccEEecCccceeeEEEEeeC------ccchHHHHHHHHHHCCceecc
Q psy6547 156 VILEENMIENAYKMGEIFRSELSSPANK-SKASFKLSSGGLKKSINTLILSVS------AILEVYDVCIKMKDAGLVTKP 228 (266)
Q Consensus 156 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~------~~~~~~~~~~~l~~~gi~~~~ 228 (266)
.++.+++.+++++..+++++.+.+.... +.+.. +++.|. ++|+.+.+. +.....++++.|.++||.+.+
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~-v~g~G~---~~~l~l~~~~~~~~p~~~~~~~l~~~~~~~Gv~~~~ 389 (425)
T PRK08088 314 VFEQENLLQKANALGEKLKDGLLAIAEKHPEIGD-VRGLGA---MIAIELFEDGDHSKPNAKLTAQIVARARDKGLILLS 389 (425)
T ss_pred HHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCeEE-Eeccce---EEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCEEec
Confidence 9988889999999999999999883333 23333 777899 999998531 123477899999999998876
Q ss_pred CC--CCEEEEeccCCCCHHHHHHHHHHHHHHHHHH
Q psy6547 229 IS--NNIIRLSPALNITEQELREGLDIIINTINTM 261 (266)
Q Consensus 229 ~~--~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~ 261 (266)
.+ .+.+|++++..+++++|++++++|.+++..+
T Consensus 390 ~~~~~~~iRl~~~~~~t~~ei~~~i~~l~~~l~~~ 424 (425)
T PRK08088 390 CGPYYNVLRILVPLTIEDAQIRQGLEIIAQCFDEA 424 (425)
T ss_pred CCCCCCEEEEECCCCcCHHHHHHHHHHHHHHHHhh
Confidence 53 4899999999999999999999999998753
No 79
>PRK06149 hypothetical protein; Provisional
Probab=100.00 E-value=1.4e-32 Score=262.68 Aligned_cols=227 Identities=29% Similarity=0.525 Sum_probs=197.0
Q ss_pred HHHHHHHh----cCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCc-ccccccCCCCcC
Q psy6547 29 DALEAKLK----SNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGK-LLAIHYEDVRPD 103 (266)
Q Consensus 29 ~~l~~~l~----~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~-~~~~~~~~~~~d 103 (266)
+++++.++ ..+++++|++||+++++|.+.++++++++++++|++||+++|+||+++|||++|. .|.++.+|+.||
T Consensus 729 ~~~~~~l~~~~~~~~~iAavI~Epv~g~gG~i~~p~~yL~~l~~lc~~~g~llI~DEV~tGfGRtG~~~~a~e~~gv~PD 808 (972)
T PRK06149 729 RDVVAQLEELDASGRGLAGFICEPVYGNAGGIALPPGYLQQVYAAVRARGGVCIADEVQVGYGRLGHYFWGFEQQGVVPD 808 (972)
T ss_pred HHHHHHHHHHhhcCCceEEEEEcccccCCCcccCCHHHHHHHHHHHHHcCCEEEEEeehhcCCccCccchhhhhcCCCCC
Confidence 45555443 2347999999999999999999999999999999999999999999999999997 568888999999
Q ss_pred eeeecccccCCchhhhhheecHHhhhccCC-CCCCCCCCCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhcccc
Q psy6547 104 IVILGKALSGGLYPISAVLADDEVMGTLVP-GTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSSPAN 182 (266)
Q Consensus 104 ~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 182 (266)
++++||++++| +|+|++++++++++.+.. ..+.+|+++||++++++.++|+.++++++++++++++++++++|++...
T Consensus 809 ivt~gK~lg~G-~Pl~av~~~~~i~~~~~~~~~~~sT~~gnP~~~aaala~L~~i~~e~l~~~~~~~G~~l~~~L~~l~~ 887 (972)
T PRK06149 809 IITMAKGMGNG-HPLGAVITRREIAEALEAEGYFFSSTGGSPVSCRIGMAVLDVLREEKLQENARRVGDHLKARLEALAD 887 (972)
T ss_pred EEEecccccCC-eeeEEEEEcHHHHhhhccCCcccCCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999 999999999999988864 3456778999999999999999999999999999999999999998333
Q ss_pred c-CCCcccEEecCccceeeEEEEeeCc------cchHHHHHHHHHHCCceeccCCC--CEEEEeccCCCCHHHHHHHHHH
Q psy6547 183 K-SKASFKLSSGGLKKSINTLILSVSA------ILEVYDVCIKMKDAGLVTKPISN--NIIRLSPALNITEQELREGLDI 253 (266)
Q Consensus 183 ~-~~~~~~~~~~g~~~~~~~~~~~~~~------~~~~~~~~~~l~~~gi~~~~~~~--~~iR~~~~~~~t~~~i~~~~~~ 253 (266)
. +.+.. ++|.|+ |+.+++.... ......+++.|+++||++.+.+. +.+||.|++.+|++++++++++
T Consensus 888 ~~~~i~~-vrG~Gl---~~gvel~~~~~~~~~~~~~~~~i~~~l~~~Gvl~~~~g~~~~vl~~~Ppl~it~~~id~~~~~ 963 (972)
T PRK06149 888 RHPLIGA-VHGMGL---YLGVELVRDRQTLEPATEETAAICDRLLELGVIMQPTGDHLNILKIKPPLCLDRESADFFVDM 963 (972)
T ss_pred hCCCeEE-Eeecce---EEEEEEecCcccCCCChHHHHHHHHHHHhCCeEEeecCCCCCEEEEECCCcCCHHHHHHHHHH
Confidence 2 44555 899999 9999985311 12356789999999999998653 7999999999999999999999
Q ss_pred HHHHHHH
Q psy6547 254 IINTINT 260 (266)
Q Consensus 254 l~~~~~~ 260 (266)
|++++.+
T Consensus 964 l~~~l~~ 970 (972)
T PRK06149 964 LDRVLTE 970 (972)
T ss_pred HHHHHHh
Confidence 9999865
No 80
>PRK07046 aminotransferase; Validated
Probab=100.00 E-value=5.7e-32 Score=239.22 Aligned_cols=236 Identities=19% Similarity=0.341 Sum_probs=197.5
Q ss_pred CCCceeecCCCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCcccccc
Q psy6547 17 MPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIH 96 (266)
Q Consensus 17 ~~~v~~~~~~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~~~~ 96 (266)
..++..++|||++++++.+.. +++++|++||+++++|.+.++++++++++++|++||+++|+||+++ | +.|......
T Consensus 196 ~~~~~~~~~nd~~~l~~~l~~-~~vAavi~EPi~g~~G~~~p~~~fl~~lr~lc~~~g~llI~DEV~t-f-r~g~Gg~~~ 272 (453)
T PRK07046 196 TATTRVVEFNDLAALEAALAD-GDVAAVLAEPAMTNIGMVLPEPGFHEALRELTRRYGTLLVIDETHT-I-SSGPGGYTR 272 (453)
T ss_pred cCceEeeCCCCHHHHHHHhCC-CCeEEEEECCCCCCCCCcCCCHHHHHHHHHHHHHhCCEEEEEcccc-C-ccCCcchhH
Confidence 456788999999999999943 4799999999999999999999999999999999999999999998 4 344333455
Q ss_pred cCCCCcCeeeecccccCCchhhhhheecHHhhhccCC---------CCCCCCCCCcHHHHHHHHHHHHHHhhccHHHHHH
Q psy6547 97 YEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVP---------GTHGSTYGGNPLACKLAMTALDVILEENMIENAY 167 (266)
Q Consensus 97 ~~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~ 167 (266)
.+++.||+++++|+++|| +|+|++++++++++.+.. ..+.+||++||++++++.++|+.++++++.+++.
T Consensus 273 ~~gv~PDi~t~gK~lggG-~Pi~av~g~~~i~~~~~~~~~~~~~~~~~~~~T~~gnpl~~aa~~a~L~~l~~~~~~~~~~ 351 (453)
T PRK07046 273 AHGLEPDFLVVGKPIAGG-VPCAVYGFSAELAERAQAAKASAPPGHSGIGTTLSANALAMAAMRATLAEVMTEAAYAHML 351 (453)
T ss_pred HhCCCccceeehhhhcCC-CcceeeeehHHHHHHHhhccccCCCCCceeCCCCcccHHHHHHHHHHHHHHhcccHHHHHH
Confidence 679999999999999999 999999999999987752 1367899999999999999999998888999999
Q ss_pred HHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCc------------cchHHHHHHHHHHCCceeccCCCCEEE
Q psy6547 168 KMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSA------------ILEVYDVCIKMKDAGLVTKPISNNIIR 235 (266)
Q Consensus 168 ~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~------------~~~~~~~~~~l~~~gi~~~~~~~~~iR 235 (266)
+..++++++|++......+...+.+.|. ++.+.+.... ..-...+...|+++||++.+. .+.++
T Consensus 352 ~~g~~l~~~L~~l~~~~~~~~~v~g~G~---~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gv~~~~~-~~~~~ 427 (453)
T PRK07046 352 ALAARLAAGLRAVIARHGLPWHVTRVGA---RVEFQFAPTPPRNGAEAAAALDPELEAALHLYLLNRGVLITPF-HNMML 427 (453)
T ss_pred HHHHHHHHHHHHHHHhCCCCeEEEEeCc---EEEEEEeCCCCCCHHHHhcccCHHHHHHHHHHHHHCCCEEecc-cCcEE
Confidence 9999999999984444444444888999 8888764311 011345778889999999885 46788
Q ss_pred EeccCCCCHHHHHHHHHHHHHHHHHHh
Q psy6547 236 LSPALNITEQELREGLDIIINTINTMA 262 (266)
Q Consensus 236 ~~~~~~~t~~~i~~~~~~l~~~~~~~~ 262 (266)
++++ +|++||++++++++++++++.
T Consensus 428 ~~p~--~t~~did~~~~~~~~~l~~~~ 452 (453)
T PRK07046 428 VCPA--TTAADVDRLVAAFDACLGELL 452 (453)
T ss_pred EeCC--CCHHHHHHHHHHHHHHHHHHh
Confidence 8864 899999999999999998764
No 81
>PRK00062 glutamate-1-semialdehyde aminotransferase; Provisional
Probab=100.00 E-value=7.9e-32 Score=237.79 Aligned_cols=237 Identities=27% Similarity=0.432 Sum_probs=200.5
Q ss_pred CCceeecCCCHHHHHHHHhcC-CCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCcccccc
Q psy6547 18 PGYNIIPYNDVDALEAKLKSN-PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIH 96 (266)
Q Consensus 18 ~~v~~~~~~d~~~l~~~l~~~-~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~~~~ 96 (266)
.++..++|+|++++++.+++. .++++|++||+++++|.+.++++++++|+++|++||+++|+||+|+|+ ++|..+..+
T Consensus 174 ~~~~~~~~~d~~~l~~~i~~~~~~~aaiivEpv~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~G~-r~g~~~~~~ 252 (426)
T PRK00062 174 KHTLTAPYNDLEAVEELFEEYGDEIAAVIVEPVAGNMGVVPPKPGFLEGLRELCDEHGALLIFDEVMTGF-RVALGGAQG 252 (426)
T ss_pred cceEEcCCCCHHHHHHHHHhCCCcEEEEEEeCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeechhcc-ccCCccHHH
Confidence 356788999999999999653 379999999999999999888999999999999999999999999999 777666667
Q ss_pred cCCCCcCeeeecccccCCchhhhhheecHHhhhccCC---CCCCCCCCCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHH
Q psy6547 97 YEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVP---GTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIF 173 (266)
Q Consensus 97 ~~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l 173 (266)
.+++.||++++||++++| +|+|++++++++++.+.. ..+.+|++++++.++++.++|+.++.+++.+++++..+++
T Consensus 253 ~~~~~pDi~~~gK~l~~G-~p~ga~~~~~~i~~~~~~~~~~~~~~T~~~~p~~~aaa~a~L~~~~~~~~~~~~~~~~~~~ 331 (426)
T PRK00062 253 YYGVTPDLTTLGKIIGGG-LPVGAFGGRREIMEQLAPLGPVYQAGTLSGNPLAMAAGLATLKLLKEPGFYEELEALTKRL 331 (426)
T ss_pred HhCCCcchHhhhhHhhCC-CcceeeeEHHHHHHhhccCCCceecccCcCCHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 788899999999999999 999999999999988852 2456788999999999999999998888999999999999
Q ss_pred HHHhhcccccCCCcccEEecCccceeeEEEEeeCcc-----------chHHHHHHHHHHCCceeccCCCCEEEEeccCCC
Q psy6547 174 RSELSSPANKSKASFKLSSGGLKKSINTLILSVSAI-----------LEVYDVCIKMKDAGLVTKPISNNIIRLSPALNI 242 (266)
Q Consensus 174 ~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-----------~~~~~~~~~l~~~gi~~~~~~~~~iR~~~~~~~ 242 (266)
+++|++......+....++.|. |+.+.+.+... ..+..+++.|.++||++.+.+.+.++++ +.+
T Consensus 332 ~~~l~~~~~~~~~~~~vrg~G~---~~~i~l~~~~~~~~~~~~~~~~~~~~~i~~~l~~~Gv~v~~~~~~~~~~~--~~~ 406 (426)
T PRK00062 332 AEGLKEAAKKAGIPLTVNRVGS---MFGLFFTDEPVTNYADAKKSDTERFARFFHAMLDEGVYLAPSQFEAGFVS--AAH 406 (426)
T ss_pred HHHHHHHHHHcCCceEEEEecc---eEEEEEecCCCcchhhhccccHHHHHHHHHHHHHCCeEeecCCcCceeee--ccC
Confidence 9999873322233333778999 99998864210 1246799999999999998766677775 789
Q ss_pred CHHHHHHHHHHHHHHHHHH
Q psy6547 243 TEQELREGLDIIINTINTM 261 (266)
Q Consensus 243 t~~~i~~~~~~l~~~~~~~ 261 (266)
|++++++++++|+++++++
T Consensus 407 t~~ei~~~~~~l~~~l~~~ 425 (426)
T PRK00062 407 TDEDIEKTLEAARKAFAAL 425 (426)
T ss_pred CHHHHHHHHHHHHHHHHhh
Confidence 9999999999999998764
No 82
>TIGR03251 LAT_fam L-lysine 6-transaminase. Characterized members of this protein family are L-lysine 6-transaminase, also called lysine epsilon-aminotransferase (LAT). The immediate product of the reaction of this enzyme on lysine, 2-aminoadipate 6-semialdehyde, becomes 1-piperideine 6-carboxylate, or P6C. This product may be converted subsequently to pipecolate or alpha-aminoadipate, lysine catabolites that may be precursors of certain seconary metabolites.
Probab=100.00 E-value=2.8e-31 Score=234.23 Aligned_cols=219 Identities=30% Similarity=0.462 Sum_probs=182.3
Q ss_pred CHHHHHHHHhcC-CCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCcccccccCCCCcCee
Q psy6547 27 DVDALEAKLKSN-PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIV 105 (266)
Q Consensus 27 d~~~l~~~l~~~-~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~~~~~~~~~~d~~ 105 (266)
+++++++.++++ +++++|++||+++++|.+.++++++++|+++|++||+++|+||+++|||++|..|+++.+++.||++
T Consensus 204 ~l~~~~~~~~~~~~~iAavivEPv~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG~GrtG~~~a~~~~gv~PDi~ 283 (431)
T TIGR03251 204 ALRQARAAFAERPHDIACFIAEPIQGEGGDNHFRPEFLRAMRALCDEHDALLIFDEVQTGVGLTGTAWAYQQLGVQPDIV 283 (431)
T ss_pred HHHHHHHHHHhCCCcEEEEEEeccccCCCCcCCCHHHHHHHHHHHHHcCCEEEEecchhccCccchHHHHHhcCCCCCEE
Confidence 456677777553 4899999999999999999999999999999999999999999999999999988888999999999
Q ss_pred eecccccCCchhhhhheecHHh---hhc-cC-CCCCCCCCCCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhcc
Q psy6547 106 ILGKALSGGLYPISAVLADDEV---MGT-LV-PGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSSP 180 (266)
Q Consensus 106 ~~sK~~~~g~~~~g~~~~~~~~---~~~-~~-~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~ 180 (266)
+++|++. ++.++..+++ ... +. ...+.+||+++|++++++.++|+.++++++.++++++.++++++|+++
T Consensus 284 ~~gK~~~-----~~g~~~~~~i~~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~L~~l~~~~l~~~~~~~g~~l~~~L~~l 358 (431)
T TIGR03251 284 AFGKKTQ-----VCGIMAGRRVDEVADNVFAVPSRLNSTWGGNLVDMVRATRILEIIEEERLVDNARVQGAHLLARLHEL 358 (431)
T ss_pred EecccCc-----cceEEecchHHHhhhhcccCccccCCCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH
Confidence 9999973 2223333332 221 11 224788999999999999999999998899999999999999999883
Q ss_pred ccc-C-CCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccCCCCEEEEeccCCCCHHHHHHHHHHHHH
Q psy6547 181 ANK-S-KASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIIN 256 (266)
Q Consensus 181 ~~~-~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~iR~~~~~~~t~~~i~~~~~~l~~ 256 (266)
... . .+.. +++.|. ++.+.++. ......+++.|+++||++.+.+.+.+|++|++.+|++++++++++|++
T Consensus 359 ~~~~~~~i~~-vrg~G~---~~~i~~~~--~~~~~~~~~~l~~~Gvl~~~~g~~~lr~~P~l~~t~~eid~~l~~l~~ 430 (431)
T TIGR03251 359 AAEFPHLVSN-PRGRGL---MCAFDLPS--TADRDEVIRQLYREGVLLLGCGERSIRFRPPLTVTREEIDAAIDAIRR 430 (431)
T ss_pred HHhCccceec-ccccce---eEEEEeCC--HHHHHHHHHHHHhCCeEEecCCCCeEEEECCccCCHHHHHHHHHHHHh
Confidence 232 3 3333 778899 99999865 334667999999999999987678999999999999999999999976
No 83
>PF00202 Aminotran_3: Aminotransferase class-III; InterPro: IPR005814 Aminotransferases share certain mechanistic features with other pyridoxalphosphate-dependent enzymes, such as the covalent binding of the pyridoxalphosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. One of these, called class-III, includes acetylornithine aminotransferase (2.6.1.11 from EC), which catalyzes the transfer of an amino group from acetylornithine to alpha-ketoglutarate, yielding N-acetyl-glutamic-5-semi-aldehyde and glutamic acid; ornithine aminotransferase (2.6.1.13 from EC), which catalyzes the transfer of an amino group from ornithine to alpha-ketoglutarate, yielding glutamic-5-semi-aldehyde and glutamic acid; omega-amino acid--pyruvate aminotransferase (2.6.1.18 from EC), which catalyzes transamination between a variety of omega-amino acids, mono- and diamines, and pyruvate; 4-aminobutyrate aminotransferase (2.6.1.19 from EC) (GABA transaminase), which catalyzes the transfer of an amino group from GABA to alpha-ketoglutarate, yielding succinate semialdehyde and glutamic acid; DAPA aminotransferase (2.6.1.62 from EC), a bacterial enzyme (bioA), which catalyzes an intermediate step in the biosynthesis of biotin, the transamination of 7-keto-8-aminopelargonic acid to form 7,8-diaminopelargonic acid; 2,2-dialkylglycine decarboxylase (4.1.1.64 from EC), a Burkholderia cepacia (Pseudomonas cepacia) enzyme (dgdA) that catalyzes the decarboxylating amino transfer of 2,2-dialkylglycine and pyruvate to dialkyl ketone, alanine and carbon dioxide; glutamate-1-semialdehyde aminotransferase (5.4.3.8 from EC) (GSA); Bacillus subtilis aminotransferases yhxA and yodT; Haemophilus influenzae aminotransferase HI0949; and Caenorhabditis elegans aminotransferase T01B11.2.; GO: 0008483 transaminase activity, 0030170 pyridoxal phosphate binding; PDB: 2JJE_A 2CJH_A 2CIN_A 2JJH_A 2JJF_A 2JJG_A 2CJG_A 2CJD_A 3BS8_A 2YKX_C ....
Probab=99.98 E-value=1e-31 Score=230.14 Aligned_cols=198 Identities=43% Similarity=0.758 Sum_probs=176.7
Q ss_pred CccCCcCcccccCCCCCCceeecCCCHHH----------HHHHHhc--CCCEEEEEEccccCCCCcccCChHHHHHHHHH
Q psy6547 2 LITTDPTSYNEFGPHMPGYNIIPYNDVDA----------LEAKLKS--NPNICAFMVEPIQGEAGAVVPDDGYLKKVRAL 69 (266)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~v~~~~~~d~~~----------l~~~l~~--~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l 69 (266)
++++++..+..+.|...+++.+|++++.. +++.+.+ .+++++|++||+++.+|.+.++++++++|+++
T Consensus 127 s~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~iaavivEPi~g~~G~~~~~~~~l~~l~~l 206 (339)
T PF00202_consen 127 SLTGNPPYRKGFGPLYPGVVFVPFPDPAADEEEQACLNALEELIAALNADEIAAVIVEPIQGEGGMIPPPPEYLRELREL 206 (339)
T ss_dssp HHSSSTHHHTTTCSSSTTEEEEETTCHHHHHHHHHHHHHHHHHHHHHHGGGEEEEEEESSBTTTTSBEE-TTHHHHHHHH
T ss_pred cccCCccccccccccccccccccCCccchhhhHHHHHHHHHHHHHhhcCCcEEEEEEeccccccCccccccchhhehccc
Confidence 45678888899999999999999999877 4443322 44899999999999999999999999999999
Q ss_pred HHhcCCEEEEeccccCcCCcCcccccccCCCCcCeeeecccccCCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHH
Q psy6547 70 CSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKL 149 (266)
Q Consensus 70 ~~~~g~~li~De~~~~~~~~g~~~~~~~~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 149 (266)
|++||+++|+||+++||||+|..|+++.+++.||+++++|++++| +|+|.+++++++++.+....+.+|+.++|+++++
T Consensus 207 c~~~gillI~DEV~tG~gRtG~~~a~~~~gv~PDiv~~gK~l~gG-~p~sav~~~~~i~~~~~~~~~~~T~~g~p~~~aa 285 (339)
T PF00202_consen 207 CREHGILLIADEVQTGFGRTGKFFASEHYGVDPDIVTFGKGLGGG-LPISAVLGSEEIMEAFQPGSHGSTFGGNPLSCAA 285 (339)
T ss_dssp HHHTT-EEEEEETTTTTTTTSSSSGHHHHTSSSSEEEEEGGGGTT-SSEEEEEEEHHHHTTSCTTSSTCTTTT-HHHHHH
T ss_pred ccccccceecccccccccccCCccceecccccCcccccccchhhh-hhcccccccchhhccccccccccccccchHhhhh
Confidence 999999999999999999999999999999999999999999999 9999999999999999888899999999999999
Q ss_pred HHHHHHHHhhccHHHHHHHHHHHHHHHhhccccc--CCCcccEEecCccceeeEEEEe
Q psy6547 150 AMTALDVILEENMIENAYKMGEIFRSELSSPANK--SKASFKLSSGGLKKSINTLILS 205 (266)
Q Consensus 150 ~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~--~~~~~~~~~~g~~~~~~~~~~~ 205 (266)
+.++|+.++++++.+++.+..++++++|++ +.. +.+.. +++.|. ++.+++.
T Consensus 286 a~~~l~~~~~~~~~~~~~~~g~~l~~~L~~-l~~~~~~i~~-vrg~Gl---~~~ie~~ 338 (339)
T PF00202_consen 286 ALATLEILEEEDLLERVRELGERLREGLRE-LAARYPLIGE-VRGIGL---MIGIELV 338 (339)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHHHHH-HHHHTTTEEE-EEEETT---EEEEEES
T ss_pred hhhHHHhhccHHHHHHHHHHHHHHHHHHHH-HHHhCCCeEE-EeeeCe---EEEEEEE
Confidence 999999999999999999999999999998 554 44444 999999 9999874
No 84
>PRK06209 glutamate-1-semialdehyde 2,1-aminomutase; Provisional
Probab=99.96 E-value=1.6e-27 Score=210.44 Aligned_cols=228 Identities=23% Similarity=0.339 Sum_probs=179.9
Q ss_pred CceeecCCCHHHHHHHHhcCC-CEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCccccccc
Q psy6547 19 GYNIIPYNDVDALEAKLKSNP-NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHY 97 (266)
Q Consensus 19 ~v~~~~~~d~~~l~~~l~~~~-~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~~~~~ 97 (266)
.+..++|+|+++|++++++++ ++++|++||++++ .++.+++++|+++|++||+++|+||+++||++.+. .....
T Consensus 165 ~~~~~~~~d~~~l~~~l~~~~~~~aavi~Epv~g~----~~~~~~l~~l~~lc~~~g~lLI~DEv~tG~~~~~~-g~~~~ 239 (431)
T PRK06209 165 LTVTFRYNDIASLEALFEDHPGRIACVILEPATAD----EPQDGFLHEVRRLCHENGALFILDEMITGFRWHMR-GAQKL 239 (431)
T ss_pred cccccCCCCHHHHHHHHHhCCCCEEEEEEccccCC----CCCHHHHHHHHHHHHHcCCEEEEEcccccCCcCcc-hhhHH
Confidence 467789999999999996543 7999999999865 47889999999999999999999999999865432 23334
Q ss_pred CCCCcCeeeecccccCCchhhhhheecHHhhhc--cC------CCCCCCCCCCcHHHHHHHHHHHHHHhhccHHHHHHHH
Q psy6547 98 EDVRPDIVILGKALSGGLYPISAVLADDEVMGT--LV------PGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKM 169 (266)
Q Consensus 98 ~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~--~~------~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~ 169 (266)
+++.||++++||++++| +|+|++++++++++. +. ...+.++++++|++++++.++|+.++++++.+++.++
T Consensus 240 ~gv~PDi~t~gK~lggG-~p~~av~~~~~i~~~~~~~~~~~~~~~~~~~T~~~np~~~aaa~a~l~~i~~~~~~~~~~~~ 318 (431)
T PRK06209 240 YGIVPDLSCFGKALGNG-FAVSALAGKREYMELGGLEHTDRERVFLLSTTHGAETHALAAAIATMAIYRDEDVIERLHEQ 318 (431)
T ss_pred hCCCcceeeehhhhcCC-cccEEEEEHHHHHhhhcccccCCCCceeeccCCCCCHHHHHHHHHHHHHHhccCHHHHHHHH
Confidence 78999999999999999 899999999998876 31 1136789999999999999999999999999999999
Q ss_pred HHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCc----c--chHHHHHHHHHHCCceeccCCCCEEEEeccCCCC
Q psy6547 170 GEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSA----I--LEVYDVCIKMKDAGLVTKPISNNIIRLSPALNIT 243 (266)
Q Consensus 170 ~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~----~--~~~~~~~~~l~~~gi~~~~~~~~~iR~~~~~~~t 243 (266)
.+++++.|++......+...+++.|. ++.+.+...+ . .-...+.++|.++|+++.+ ++++ ..+|
T Consensus 319 g~~l~~~L~~~~~~~~~~~~vr~~G~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~p~-----l~is--~~ht 388 (431)
T PRK06209 319 GAKLAAGVNEAAAEHGLQDHVRVSGR---PCCLTYSTLDGNGQPSQAFRTLFLQETIRRGVLMPS-----LVVS--YAHG 388 (431)
T ss_pred HHHHHHHHHHHHHhCCCCeEEEeecc---eEEEEEecCCcccCCcHHHHHHHHHHHHHCCccccc-----cccc--ccCC
Confidence 99999999873332333332566676 5554443100 1 1133678889999998733 3444 7889
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q psy6547 244 EQELREGLDIIINTINTMA 262 (266)
Q Consensus 244 ~~~i~~~~~~l~~~~~~~~ 262 (266)
+++|++++++++++++++.
T Consensus 389 ~~dId~~l~~l~~~l~~~~ 407 (431)
T PRK06209 389 DADIERTIDAVHGALGVYR 407 (431)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998863
No 85
>COG0436 Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]
Probab=99.96 E-value=6.7e-28 Score=209.71 Aligned_cols=243 Identities=21% Similarity=0.237 Sum_probs=188.0
Q ss_pred CCcCcccccCCCCCCceeecC--------CCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCE
Q psy6547 5 TDPTSYNEFGPHMPGYNIIPY--------NDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVL 76 (266)
Q Consensus 5 ~~~~~~~~~~~~~~~v~~~~~--------~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~ 76 (266)
.||.........+.+++.++- .|+++|++.+ .+++++++++.++||+|.+ ++++.+++|+++|++||++
T Consensus 122 ~Y~~y~~~~~~~gg~~v~v~l~~~~~~f~~d~~~l~~~i--~~ktk~i~ln~P~NPTGav-~~~~~l~~i~~~a~~~~i~ 198 (393)
T COG0436 122 GYPSYEAAVKLAGGKPVPVPLDEEENGFKPDLEDLEAAI--TPKTKAIILNSPNNPTGAV-YSKEELKAIVELAREHDII 198 (393)
T ss_pred CCcCHHHHHHhcCCEEEEEeCCcCccCCcCCHHHHHhhc--CccceEEEEeCCCCCcCcC-CCHHHHHHHHHHHHHcCeE
Confidence 444444555667778888772 2699999999 5589999999999999988 9999999999999999999
Q ss_pred EEEeccccCcCCcCc-ccc-cccC---CCCcCeeeeccccc-CCchhhhhheec-HHhhhccCCCCCCCCCCCcHHHHHH
Q psy6547 77 FIADEVQTGLGRTGK-LLA-IHYE---DVRPDIVILGKALS-GGLYPISAVLAD-DEVMGTLVPGTHGSTYGGNPLACKL 149 (266)
Q Consensus 77 li~De~~~~~~~~g~-~~~-~~~~---~~~~d~~~~sK~~~-~g~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a 149 (266)
||+||+|.++...|. +.+ .+.. .....+.+|||.++ +| ||+||++++ +++.+.+.......+++++.+.|.+
T Consensus 199 ii~DEiY~~l~yd~~~~~s~~~~~~~~~~~i~i~s~SK~~~mtG-wRvG~~v~~~~~l~~~~~~~~~~~~~~~~~~~Q~a 277 (393)
T COG0436 199 IISDEIYEELVYDGAEHPSILELAGARDRTITINSFSKTYGMTG-WRIGWVVGPPEELIAALRKLKSYLTSCAPTPAQYA 277 (393)
T ss_pred EEEehhhhhcccCCCCcCCHhhcCCCcceEEEEecccccccccc-cceeEeecChHHHHHHHHHHHHhcccCCCHHHHHH
Confidence 999999998866663 222 2222 23455666999999 89 999999998 7788777766677888899999999
Q ss_pred HHHHHHHHhh----ccHHHHHHHHHHHHHHHhhcccc-cCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHH-CC
Q psy6547 150 AMTALDVILE----ENMIENAYKMGEIFRSELSSPAN-KSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKD-AG 223 (266)
Q Consensus 150 ~~~~l~~~~~----~~~~~~~~~~~~~l~~~l~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~-~g 223 (266)
+.++|+.-.. +...+.++++++.+.+.|.+ ++ ..... .+..++ ++|..++. ..+..+|+.+|++ .|
T Consensus 278 a~~aL~~~~~~~~~~~~~~~~~~rrd~l~~~l~~-~~g~~~~~--~p~Ga~---Y~~~~i~~--~~d~~~f~~~Ll~~~g 349 (393)
T COG0436 278 AIAALNGPQSDEVVEEMREEYRERRDLLVEALNE-IGGLSVVK--PPEGAF---YLFPKIPE--LLDSEEFAKKLLEEAG 349 (393)
T ss_pred HHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHh-cCCeeecc--CCCeeE---EEEeecCC--CCCHHHHHHHHHHhCC
Confidence 9999985421 33456788899999999987 44 22221 123455 67777776 4688999999885 58
Q ss_pred ceeccC-------CCCEEEEeccCCCCHHHHHHHHHHHHHHHHHH
Q psy6547 224 LVTKPI-------SNNIIRLSPALNITEQELREGLDIIINTINTM 261 (266)
Q Consensus 224 i~~~~~-------~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~ 261 (266)
|.+.|+ +.+++|++ +..++++++++++++.+++...
T Consensus 350 V~v~PG~~Fg~~~g~~~vRis--~~~~~~~l~~a~~rl~~~~~~~ 392 (393)
T COG0436 350 VAVVPGSGFGEPPGEGYVRLS--LATSEETLEEALRRLARFLAEY 392 (393)
T ss_pred EEEecccccCCCCCCCeEEEE--EecCHHHHHHHHHHHHHHHHhc
Confidence 999985 34799999 6677899999999999988753
No 86
>PLN02822 serine palmitoyltransferase
Probab=99.94 E-value=1.6e-25 Score=199.96 Aligned_cols=235 Identities=18% Similarity=0.212 Sum_probs=180.7
Q ss_pred CCCCCceeecCCCHHHHHHHHhcC-------CCE-EEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEecccc--
Q psy6547 15 PHMPGYNIIPYNDVDALEAKLKSN-------PNI-CAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQT-- 84 (266)
Q Consensus 15 ~~~~~v~~~~~~d~~~l~~~l~~~-------~~~-~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~-- 84 (266)
..+.+++.++|||.++++..+++. +++ ++|++|++++++|.+. ++++|+++|++||+++|+||+|+
T Consensus 212 ls~~~~~~~~~nd~~~l~~~l~~~~~~~~~~~~~~~~Ivve~i~~~~G~i~----~L~~i~~l~~k~~~~LIvDEa~s~g 287 (481)
T PLN02822 212 LSRSTIVYFKHNDMESLRNTLEKLTAENKRKKKLRRYIVVEAIYQNSGQIA----PLDEIVRLKEKYRFRVLLDESNSFG 287 (481)
T ss_pred HcCCeEEEECCCCHHHHHHHHHHHhhhhcccCCCcEEEEEecCCCCCCCcc----CHHHHHHHHHHcCCEEEEECCcccc
Confidence 346789999999999999888641 234 7999999999999987 69999999999999999999996
Q ss_pred CcCCcCcccccccCCC---CcCeee--ecccccCCchhhhhheecHHhhhccCCCCCCCCCCCc--HHHHHHHHHHHHHH
Q psy6547 85 GLGRTGKLLAIHYEDV---RPDIVI--LGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGN--PLACKLAMTALDVI 157 (266)
Q Consensus 85 ~~~~~g~~~~~~~~~~---~~d~~~--~sK~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~a~~~~l~~~ 157 (266)
.+|++|.+ ....+++ .+|+++ |||+++.. .||+++++++++.++...+..+|+++ +..++++.++|+.+
T Consensus 288 vlG~~G~G-~~e~~~v~~~~~dii~~s~sKalg~~---GG~i~g~~~ii~~~~~~~~~~~fsa~lPp~~~~Aa~~aL~~l 363 (481)
T PLN02822 288 VLGKSGRG-LSEHFGVPIEKIDIITAAMGHALATE---GGFCTGSARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVL 363 (481)
T ss_pred ccCCCCCC-hHHHcCCCCCCCeEEEecchhhhhhC---CeEEEcCHHHHHHHHhcCCceeeccccCHHHHHHHHHHHHHH
Confidence 24555554 3455665 678877 88999822 36788999999888766677778765 77788888899887
Q ss_pred hh-ccHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCc------cchHHHHHHHHH-HCCceeccC
Q psy6547 158 LE-ENMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSA------ILEVYDVCIKMK-DAGLVTKPI 229 (266)
Q Consensus 158 ~~-~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~------~~~~~~~~~~l~-~~gi~~~~~ 229 (266)
+. +++.++++++++++++.|++ +. .+.....+.+ |++++.+++.. .....+++++|+ ++||++.+.
T Consensus 364 ~~~~~~~~~l~~~~~~l~~~L~~-~~--g~~~~~~~~s---pi~~l~l~~~~~~~~~~~~~~~~~~~~Ll~e~GV~v~~~ 437 (481)
T PLN02822 364 EDNPSVLAKLKENIALLHKGLSD-IP--GLSIGSNTLS---PIVFLHLEKSTGSAKEDLSLLEHIADRMLKEDSVLVVVS 437 (481)
T ss_pred HhCHHHHHHHHHHHHHHHHHHHh-cC--CcccCCCCCC---CEEEEEeCCCcccccchHHHHHHHHHHHHhcCCEEEEee
Confidence 65 57889999999999999998 42 1221011223 48888886410 112467999998 889999864
Q ss_pred ---------CCCEEEEeccCCCCHHHHHHHHHHHHHHHHHHhh
Q psy6547 230 ---------SNNIIRLSPALNITEQELREGLDIIINTINTMAA 263 (266)
Q Consensus 230 ---------~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~~~ 263 (266)
....+|++++..+|+++|++++++|++++.+++.
T Consensus 438 ~~~~~~~~~~~~~lRi~is~~~t~edI~~~~~~l~~~~~~~~~ 480 (481)
T PLN02822 438 KRSTLDKCRLPVGIRLFVSAGHTESDILKASESLKRVAASVLK 480 (481)
T ss_pred CCCCcCCCCCCCcEEEEECCCCCHHHHHHHHHHHHHHHHHHhc
Confidence 1346999999999999999999999999988654
No 87
>KOG1403|consensus
Probab=99.94 E-value=1.7e-26 Score=185.17 Aligned_cols=227 Identities=26% Similarity=0.419 Sum_probs=197.2
Q ss_pred HHHHHHHhc----CCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCc-ccccccCCCCcC
Q psy6547 29 DALEAKLKS----NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGK-LLAIHYEDVRPD 103 (266)
Q Consensus 29 ~~l~~~l~~----~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~-~~~~~~~~~~~d 103 (266)
+.+++++.. ...+++++.|+.++++|.+.+|..+.+++++..+.+|.+.|.||++.||||.|. .|+++.+++.||
T Consensus 194 d~vk~I~~d~~~~g~gvAAfiAEslQSCGGQiiPPagYFq~Va~~Vr~aGGv~IaDEVQvGFGRvG~hyWafq~y~fiPD 273 (452)
T KOG1403|consen 194 DPVKEICQDQLAKGQGVAAFIAESLQSCGGQIIPPAGYFQAVADAVRSAGGVCIADEVQVGFGRVGSHYWAFQTYNFIPD 273 (452)
T ss_pred hHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccCchhHHHHHHHHHhcCCCeEEeehhhhcccccchhhhhhhhhccccc
Confidence 556666532 337899999999999999999999999999999999999999999999999997 467888999999
Q ss_pred eeeecccccCCchhhhhheecHHhhhccCC--CCCCCCCCCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccc
Q psy6547 104 IVILGKALSGGLYPISAVLADDEVMGTLVP--GTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSSPA 181 (266)
Q Consensus 104 ~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~ 181 (266)
+++++|.+|+| .|+++++..+++.+.+.. .....||++||++++++++.++.++.|++++|.++.+.++...|++ +
T Consensus 274 IVtmgKpmGNG-hPVa~VattkeIA~Af~atgv~YFNTyGGnPVsCAv~laVm~v~e~E~Lq~ha~~vG~~L~~lL~~-~ 351 (452)
T KOG1403|consen 274 IVTMGKPMGNG-HPVAAVATTKEIAQAFHATGVEYFNTYGGNPVSCAVGLAVMRVCEDENLQEHAQQVGEKLEVLLRR-L 351 (452)
T ss_pred hheecccCCCC-CeeeEEeccHHHHHHhccccceehhccCCCchhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH-H
Confidence 99999999999 999999999999998874 4678999999999999999999999999999999999999999998 5
Q ss_pred c-c-CCCcccEEecCccceeeEEEEeeCc------cchHHHHHHHHHHC-CceeccC--CCCEEEEeccCCCCHHHHHHH
Q psy6547 182 N-K-SKASFKLSSGGLKKSINTLILSVSA------ILEVYDVCIKMKDA-GLVTKPI--SNNIIRLSPALNITEQELREG 250 (266)
Q Consensus 182 ~-~-~~~~~~~~~~g~~~~~~~~~~~~~~------~~~~~~~~~~l~~~-gi~~~~~--~~~~iR~~~~~~~t~~~i~~~ 250 (266)
. . ..+++ ++|.|+ |+.+++..+. ...+..+..+|++. +|++..- +.+.+.+-|+.+.++++.++.
T Consensus 352 k~kh~~IGD-vRGvGL---FiGIdLVkD~~tRtP~tk~A~~~v~rlke~y~VLlsaDGPh~NilKiKPPmCFneena~e~ 427 (452)
T KOG1403|consen 352 KQKHECIGD-VRGVGL---FIGIDLVKDRKTRTPDTKEAHWVVNRLKELYRVLLSADGPHRNILKIKPPMCFNEENADEF 427 (452)
T ss_pred hhhccceec-cccceE---EEeeeeecccccCCCcHHHHHHHHHHHHHhhhEEEecCCCCCceeecCCCcccChhhHHHH
Confidence 4 3 56677 999999 9999987532 12345567788754 7988854 458899999999999999999
Q ss_pred HHHHHHHHHHH
Q psy6547 251 LDIIINTINTM 261 (266)
Q Consensus 251 ~~~l~~~~~~~ 261 (266)
+..|++++..+
T Consensus 428 v~~ld~iLT~m 438 (452)
T KOG1403|consen 428 VLGLDEILTVM 438 (452)
T ss_pred HHHHHHHHHHH
Confidence 99999988755
No 88
>PLN03227 serine palmitoyltransferase-like protein; Provisional
Probab=99.94 E-value=5.8e-25 Score=192.13 Aligned_cols=238 Identities=17% Similarity=0.202 Sum_probs=175.4
Q ss_pred CCCceeecCCCHHHHHHHHhc------------CCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEecccc
Q psy6547 17 MPGYNIIPYNDVDALEAKLKS------------NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQT 84 (266)
Q Consensus 17 ~~~v~~~~~~d~~~l~~~l~~------------~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~ 84 (266)
..+++.++|+|++++++.+++ .+++++|++|++++++|.+. ++++++++|++||+++|+||+|+
T Consensus 103 ~~~~~~~~~~d~~~l~~~~~~i~~~~~a~~~~~~~~t~~vi~E~v~~~~G~i~----~l~~i~~l~~~~g~~livDe~~~ 178 (392)
T PLN03227 103 RANVRWFRHNDMKDLRRVLEQVRAQDVALKRKPTDQRRFLVVEGLYKNTGTLA----PLKELVALKEEFHYRLILDESFS 178 (392)
T ss_pred CCeEEEeCCCCHHHHHHHHHHhhhhccccccccCCCcEEEEEcCCcCCCCccc----CHHHHHHHHHHcCCEEEEECccc
Confidence 457888999998888876542 12578999999999999987 69999999999999999999995
Q ss_pred --CcCCcCcccccccCCCCc----CeeeecccccCCchhhhhheecHHhhhccCCCCCCCCCCCc--HHHHHHHHHHHHH
Q psy6547 85 --GLGRTGKLLAIHYEDVRP----DIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGN--PLACKLAMTALDV 156 (266)
Q Consensus 85 --~~~~~g~~~~~~~~~~~~----d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~a~~~~l~~ 156 (266)
.+++.|. +..+.+|+.| |++++|++-+.| ...|++++++++++.++...+..+|+++ |+.++++..+++.
T Consensus 179 ~g~~g~~G~-g~~~~~g~~p~~~~Div~~slsk~~g-~~gg~v~~~~~~~~~~~~~~~~~~~~~~~~p~~~~aa~~al~~ 256 (392)
T PLN03227 179 FGTLGKSGR-GSLEHAGLKPMVHAEIVTFSLENAFG-SVGGMTVGSEEVVDHQRLSGSGYCFSASAPPFLAKADATATAG 256 (392)
T ss_pred ccccCCCCC-cHHHHcCCCCCCCceEEEeechhhhh-ccCcEEecCHHHHHHHHHhCcCccccCCCCHHHHHHHHHHHHH
Confidence 2344455 4566777777 888855332223 4567788898888776655566677665 7677777777755
Q ss_pred -HhhccHHHHHHHHHHHHHHHhhcccccCCCcccEEecC-----ccceeeEEEEeeCcc-------chHHHHHHHHHHCC
Q psy6547 157 -ILEENMIENAYKMGEIFRSELSSPANKSKASFKLSSGG-----LKKSINTLILSVSAI-------LEVYDVCIKMKDAG 223 (266)
Q Consensus 157 -~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g-----~~~~~~~~~~~~~~~-------~~~~~~~~~l~~~g 223 (266)
.+.+++.++++++++++++.|++ .+.+.+.. +++.+ ..+|++.+.+.+... ....+++++|.++|
T Consensus 257 ~~~~~~~~~~l~~~~~~l~~~L~~-~~~~~~~~-~rg~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~G 334 (392)
T PLN03227 257 ELAGPQLLNRLHDSIANLYSTLTN-SSHPYALK-LRNRLVITSDPISPIIYLRLSDQEATRRTDETLILDQIAHHSLSEG 334 (392)
T ss_pred HhcCHHHHHHHHHHHHHHHHHHHh-cCCccccc-cccccccCCCCCCCEEEEEeCCHHHhhhhhhhhHHHHHHHHHHHCC
Confidence 44567899999999999999986 44333322 33311 134589999865110 01358999999999
Q ss_pred ceeccC-----------CCCEEEEeccCCCCHHHHHHHHHHHHHHHHHHh
Q psy6547 224 LVTKPI-----------SNNIIRLSPALNITEQELREGLDIIINTINTMA 262 (266)
Q Consensus 224 i~~~~~-----------~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~~ 262 (266)
+++.+. .+..+|++++..+|++|++++++.|++++++..
T Consensus 335 i~~~~~~~~~~~~~~~~P~~~iR~~~~~~~t~eei~~~~~~l~~~~~~~~ 384 (392)
T PLN03227 335 VAVVSTGGHVKKFLQLVPPPCLRVVANASHTREDIDKLLTVLGEAVEAIL 384 (392)
T ss_pred CEEEecccccCCcCCCCCCceEEEEecCCCCHHHHHHHHHHHHHHHHHHH
Confidence 988642 246789999999999999999999999988764
No 89
>COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]
Probab=99.94 E-value=2.1e-25 Score=198.12 Aligned_cols=249 Identities=21% Similarity=0.224 Sum_probs=195.0
Q ss_pred cCCcCcccccCCCCCCceeecCC----CHHHHHHHHhcCCCEEEEEEccc-cCCCCcccCChHHHHHHHHHHHhcCCEEE
Q psy6547 4 TTDPTSYNEFGPHMPGYNIIPYN----DVDALEAKLKSNPNICAFMVEPI-QGEAGAVVPDDGYLKKVRALCSQYNVLFI 78 (266)
Q Consensus 4 ~~~~~~~~~~~~~~~~v~~~~~~----d~~~l~~~l~~~~~~~~i~~~~~-~~~~g~~~~~~~~l~~l~~l~~~~g~~li 78 (266)
.+++...+.|..++.+++.||.+ |+++|++.++++ ++++++++|. +|++|.+ ++.+..++|.++|++||++||
T Consensus 187 PtY~~~~~~~~~~g~~~~~vp~d~~G~~~e~le~~~~~~-~~k~~y~~P~~qNPtG~t-ms~~rR~~Ll~lA~~~~~~II 264 (459)
T COG1167 187 PTYPGALQALEALGARVIPVPVDEDGIDPEALEEALAQW-KPKAVYVTPTFQNPTGVT-MSLERRKALLALAEKYDVLII 264 (459)
T ss_pred CCcHHHHHHHHHcCCcEEecCCCCCCCCHHHHHHHHhhc-CCcEEEECCCCCCCCCCc-cCHHHHHHHHHHHHHcCCeEE
Confidence 35566667889999999999976 699999999765 7999999997 5555655 999999999999999999999
Q ss_pred EeccccCcCCcCcc----cccccCCCCcCeeeecccccCCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHHH
Q psy6547 79 ADEVQTGLGRTGKL----LAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTAL 154 (266)
Q Consensus 79 ~De~~~~~~~~g~~----~~~~~~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l 154 (266)
+||.|+.|...+.+ .+++..+....+.+|||.+++| +|+||+++++++.+.+....+..+.+++.+.+.+...-+
T Consensus 265 EDD~y~el~~~~~p~~~l~~ld~~~rViy~gSFSK~l~Pg-lRlG~vv~p~~~~~~~~~~k~~~~~~~s~~~Q~~la~~l 343 (459)
T COG1167 265 EDDYYGELRYDGPPPPPLKALDAPGRVIYLGSFSKTLAPG-LRLGYVVAPPELIEKLLRLKQAADLGPSSLSQAALAAFL 343 (459)
T ss_pred eeCcchhhhcCCCCCCChHhhCCCCCEEEEeeehhhcccc-cceeeeeCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 99999887544332 2344445677888899999999 999999999999999888888889999999988877655
Q ss_pred HH--Hhh--ccHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceecc-C
Q psy6547 155 DV--ILE--ENMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKP-I 229 (266)
Q Consensus 155 ~~--~~~--~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~-~ 229 (266)
.. +.. ..++..++++++.+.+.|.+.++ ..+....+..|+ |+|+.+++ +.+..++..+++++|+.+.| +
T Consensus 344 ~~G~~~~hl~~lR~~y~~rr~~l~~~L~~~~~-~~~~~~~p~gG~---flwl~l~~--~~~~~~l~~~a~~~gv~i~~~g 417 (459)
T COG1167 344 LSGHYDRHLRRLRREYARRRDALLEALAEYLP-ELATWTRPEGGL---FLWLELPE--GIDARELLAAALEKGVVVTPLG 417 (459)
T ss_pred HcCCHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CCeeeecCCceE---EEEEEcCC--CCCHHHHHHHHHHCCCEEEcCC
Confidence 41 111 23444455555556566666222 233332445689 99999999 78899999999999999998 3
Q ss_pred --------CCCEEEEeccCCCCHHHHHHHHHHHHHHHHHHh
Q psy6547 230 --------SNNIIRLSPALNITEQELREGLDIIINTINTMA 262 (266)
Q Consensus 230 --------~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~~ 262 (266)
..+++|++++.. +++++++++++|.+.+.+..
T Consensus 418 ~~f~~~~~~~~~~Rl~~s~~-~~e~i~~gi~~l~~~~~~~~ 457 (459)
T COG1167 418 SAFSADGDPRNGLRLSFSSP-SEEEIEEGIKRLAALLREAA 457 (459)
T ss_pred ccccCCCCCCCeEEEEcCCC-CHHHHHHHHHHHHHHHHHHh
Confidence 135899998755 79999999999999988754
No 90
>PRK09064 5-aminolevulinate synthase; Validated
Probab=99.94 E-value=1.1e-24 Score=191.92 Aligned_cols=227 Identities=18% Similarity=0.220 Sum_probs=173.6
Q ss_pred CCCceeecCCCHHHHHHHHhcC--CCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEecccc-C-cCCcCcc
Q psy6547 17 MPGYNIIPYNDVDALEAKLKSN--PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQT-G-LGRTGKL 92 (266)
Q Consensus 17 ~~~v~~~~~~d~~~l~~~l~~~--~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~-~-~~~~g~~ 92 (266)
+.++..++++|++++++++++. +++++|+++++++++|.+. ++++|.++|++||+++|+||+|+ | +++.|..
T Consensus 153 ~~~~~~~~~~d~~~le~~l~~~~~~~~~~v~~~~v~s~~G~~~----~l~~i~~l~~~~~~~livDEa~~~G~~g~~g~g 228 (407)
T PRK09064 153 RCEKHIFRHNDVAHLEELLAAADPDRPKLIAFESVYSMDGDIA----PIAEICDLADKYNALTYLDEVHAVGMYGPRGGG 228 (407)
T ss_pred CCcEEEECCCCHHHHHHHHHhccCCCCeEEEEeCCCCCCcccc----CHHHHHHHHHHcCCEEEEECCCcccccCCCCCC
Confidence 4456788899999999999642 3679999999999999887 79999999999999999999996 5 5666654
Q ss_pred cccccCCC--CcCee--eecccccCCchhhhhheecHHhhhccCCCC--CCCCCCCcHHHHHHHHHHHHHHhhcc-HHHH
Q psy6547 93 LAIHYEDV--RPDIV--ILGKALSGGLYPISAVLADDEVMGTLVPGT--HGSTYGGNPLACKLAMTALDVILEEN-MIEN 165 (266)
Q Consensus 93 ~~~~~~~~--~~d~~--~~sK~~~~g~~~~g~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~a~~~~l~~~~~~~-~~~~ 165 (266)
+ ....++ .+|++ +|||+++. ..||+++++++++.+.... ...+.+.++..++++.++++.++..+ ..++
T Consensus 229 ~-~~~~~~~~~~div~~t~sKa~g~---~GG~~~~~~~~~~~l~~~~~~~~~t~~~~~~~~~aa~~al~~~~~~~~~~~~ 304 (407)
T PRK09064 229 I-AERDGLMDRIDIIEGTLAKAFGV---MGGYIAGSAALVDAVRSYAPGFIFTTSLPPAIAAAALASIRHLKESNEERER 304 (407)
T ss_pred h-HHhcCCCCCCeEEEEecchhhhc---cCceEecCHHHHHHHHHhCccccccCcCCHHHHHHHHHHHHHHhcCHHHHHH
Confidence 3 233343 45776 79999972 2367888888877665322 22344677888888999999887643 4588
Q ss_pred HHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHH-CCceeccC-------CCCEEEEe
Q psy6547 166 AYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKD-AGLVTKPI-------SNNIIRLS 237 (266)
Q Consensus 166 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~-~gi~~~~~-------~~~~iR~~ 237 (266)
+.++++++++.|++ ++...+. +.+. ++.+.++. ...+.+++++|++ +||++++. +.+++|++
T Consensus 305 ~~~~~~~l~~~L~~-~g~~~~~----~~~~---iv~i~~~~--~~~~~~l~~~L~~~~gi~v~~~~~p~~~~~~~~lRis 374 (407)
T PRK09064 305 HQERAAKLKAALDA-AGIPVMP----NESH---IVPVMVGD--PEKCKKASDMLLEEHGIYVQPINYPTVPRGTERLRIT 374 (407)
T ss_pred HHHHHHHHHHHHHH-cCCCCCC----CCCC---EEEEEeCC--HHHHHHHHHHHHHhCCEEEeeECCCCCCCCCceEEEE
Confidence 89999999999988 5533222 2344 77777754 3457789999875 59999753 23689999
Q ss_pred ccCCCCHHHHHHHHHHHHHHHHHH
Q psy6547 238 PALNITEQELREGLDIIINTINTM 261 (266)
Q Consensus 238 ~~~~~t~~~i~~~~~~l~~~~~~~ 261 (266)
+++.+|++|++++++.|+++++++
T Consensus 375 ~~~~~t~edi~~l~~~l~~~~~~~ 398 (407)
T PRK09064 375 PTPFHTDEMIDHLVEALVEVWARL 398 (407)
T ss_pred eCCCCCHHHHHHHHHHHHHHHHHc
Confidence 999999999999999999988764
No 91
>KOG1405|consensus
Probab=99.93 E-value=5e-25 Score=180.12 Aligned_cols=220 Identities=24% Similarity=0.314 Sum_probs=190.7
Q ss_pred HHHHHHHHhcC----CCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCcccccccCCC--C
Q psy6547 28 VDALEAKLKSN----PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDV--R 101 (266)
Q Consensus 28 ~~~l~~~l~~~----~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~~~~~~~~--~ 101 (266)
++++|++|.++ ..++++++||+++.+|.-..++++++.|++++++||+.+|+||+++|-|.+|..|+.++|++ -
T Consensus 255 l~~Ve~li~~~~~k~~pVaaiIvEPIQsEGGDnhaSp~Ff~kLrdi~~Kh~v~fivDEVQTGgGaTGk~WaHehw~l~~P 334 (484)
T KOG1405|consen 255 LAEVEDLIVKYRKKKKPVAAIIVEPIQSEGGDNHASPDFFRKLRDITKKHGVAFIVDEVQTGGGATGKFWAHEHWNLDSP 334 (484)
T ss_pred HHHHHHHHHHHhhcCCCeEEEEeechhccCCCccCCHHHHHHHHHHHHhcCeEEEeeeeecCCCccCceeeehhcCCCCC
Confidence 78888888653 27899999999999999999999999999999999999999999999999999999999987 6
Q ss_pred cCeeeeccccc-CCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhcc
Q psy6547 102 PDIVILGKALS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSSP 180 (266)
Q Consensus 102 ~d~~~~sK~~~-~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~ 180 (266)
||+++|||-|. ||+ .-.+++ ..-+++.+..||.+.|.-+..+..+++.+..+++.+++...++.+..+|.+
T Consensus 335 pD~vTFSKK~q~gGf------fh~~~f-rpn~pYrifNTWmGdP~k~lll~~vv~~I~~~~Ll~n~~~vG~~l~~gL~~- 406 (484)
T KOG1405|consen 335 PDVVTFSKKFQTGGF------FHDEEF-RPNEPYRIFNTWMGDPSKNLLLEEVVQEIKREDLLNNVAHVGKALLKGLLE- 406 (484)
T ss_pred ccceehhhhhhcCcc------ccCccc-CCCchHHHhhhhcCChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH-
Confidence 89999999887 552 122222 233456789999999998888999999999999999999999999999998
Q ss_pred ccc--CCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccCCCCEEEEeccCCCCHHHHHHHHHHHHHHH
Q psy6547 181 ANK--SKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTI 258 (266)
Q Consensus 181 ~~~--~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~iR~~~~~~~t~~~i~~~~~~l~~~~ 258 (266)
+.. +..-...+|.|. |..+++++ +...+.++..++-+|+.+..++...||+.|++..++...+-+++++++.+
T Consensus 407 Lq~~~p~~~~~~RGrGT---F~a~d~ps--~~~Rdk~i~~~~~nGv~~GGCg~~siRfRPsLvf~~~Ha~i~l~~~~k~l 481 (484)
T KOG1405|consen 407 LQAKYPGKINNLRGRGT---FIAWDCPS--GSIRDKLILIARLNGVNLGGCGDKSIRFRPSLVFRKHHADIFLDIFDKIL 481 (484)
T ss_pred HHHhCchhhhcccccce---EEEEeCCC--hHHHHHHHHHHHHcCceecccccceeeeccceeehhhhHHHHHHHHHHHh
Confidence 553 333333788999 99999998 66678899999999999999999999999999999999999999999988
Q ss_pred HH
Q psy6547 259 NT 260 (266)
Q Consensus 259 ~~ 260 (266)
++
T Consensus 482 ~~ 483 (484)
T KOG1405|consen 482 AG 483 (484)
T ss_pred cc
Confidence 65
No 92
>PLN02955 8-amino-7-oxononanoate synthase
Probab=99.93 E-value=1.3e-24 Score=190.07 Aligned_cols=221 Identities=12% Similarity=0.109 Sum_probs=166.8
Q ss_pred CCceeecCCCHHHHHHHHhcCC-CEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccC--cCCcCcccc
Q psy6547 18 PGYNIIPYNDVDALEAKLKSNP-NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTG--LGRTGKLLA 94 (266)
Q Consensus 18 ~~v~~~~~~d~~~l~~~l~~~~-~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~--~~~~g~~~~ 94 (266)
.+++.++|||+++|++++++.+ +.+.|++|+++++.|.+. ++++|.++|++||+.+|+||+|+. +|..|.+ .
T Consensus 226 a~~~~f~HND~~~Le~~L~~~~~~~~~Vv~EgV~SmdGdia----pL~eL~~L~~~~ga~LiVDEAH~~Gv~G~~G~G-~ 300 (476)
T PLN02955 226 VEVFVYRHCDMYHLNSLLSSCKMKRKVVVTDSLFSMDGDFA----PMEELSQLRKKYGFLLVIDDAHGTFVCGENGGG-V 300 (476)
T ss_pred ceEEEeCCCCHHHHHHHHHhCCCCceEEEEeCCCCCCCCcC----CHHHHHHHHHHcCcEEEEcccccCceecCCCCc-H
Confidence 5688899999999999997643 568899999999999987 799999999999999999999953 3444443 3
Q ss_pred cccCCCCcCe----eeecccccCCchhhhhheecHHhhhccCCCCCCCCC--CCcHHHHHHHHHHHHHHhhc-cHHHHHH
Q psy6547 95 IHYEDVRPDI----VILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTY--GGNPLACKLAMTALDVILEE-NMIENAY 167 (266)
Q Consensus 95 ~~~~~~~~d~----~~~sK~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~a~~~~l~~~~~~-~~~~~~~ 167 (266)
...+++.+++ .+|||++| .+.|++++++++++.++.......| ..++..++++.++++.+..+ ..++++.
T Consensus 301 ~e~~g~~~di~ii~~TLsKA~G---~~GGfi~gs~~~~~~l~~~~~~~ifStalpp~~aaa~laal~l~~~~~~~r~~L~ 377 (476)
T PLN02955 301 AEEFNCEADVDLCVGTLSKAAG---CHGGFIACSKKWKQLIQSRGRSFIFSTAIPVPMAAAAYAAVVVARKEKWRRKAIW 377 (476)
T ss_pred HHHhCCCCCCcEEEEeCccchh---ccCceeecHHHHHHHHHHhCCCCeecccccHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 3455554443 66999998 2245688888888777643222222 34455667778888887654 4567777
Q ss_pred HHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccC-------CCCEEEEeccC
Q psy6547 168 KMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPI-------SNNIIRLSPAL 240 (266)
Q Consensus 168 ~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~-------~~~~iR~~~~~ 240 (266)
++.+++++.+ ++.. .+|++.+.+.+ ...+.++.++|+++||++.+. +...+|++++.
T Consensus 378 ~n~~~fr~~~-------G~~~-------~sPI~pI~ig~--~~~a~~~~~~L~~~Gi~v~~i~yPtVP~g~~rLRi~lsA 441 (476)
T PLN02955 378 ERVKEFKALS-------GVDI-------SSPIISLVVGN--QEKALKASRYLLKSGFHVMAIRPPTVPPNSCRLRVTLSA 441 (476)
T ss_pred HHHHHHHHhc-------CCCC-------CCCEEEEEeCC--HHHHHHHHHHHHHCCCEEEEECCCCCCCCCceEEEeeCC
Confidence 7777777631 1211 35799999987 567888999999999998742 44689999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHh
Q psy6547 241 NITEQELREGLDIIINTINTMA 262 (266)
Q Consensus 241 ~~t~~~i~~~~~~l~~~~~~~~ 262 (266)
.+|++||+++++.|.++.+...
T Consensus 442 ~Ht~edId~lv~~L~~~~~~~~ 463 (476)
T PLN02955 442 AHTTEDVKKLITALSSCLDFDN 463 (476)
T ss_pred CCCHHHHHHHHHHHHHHHhhhc
Confidence 9999999999999998876643
No 93
>PRK07324 transaminase; Validated
Probab=99.93 E-value=7.3e-25 Score=190.72 Aligned_cols=234 Identities=17% Similarity=0.207 Sum_probs=169.0
Q ss_pred CCCCCCceeecC-------CCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCc
Q psy6547 14 GPHMPGYNIIPY-------NDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGL 86 (266)
Q Consensus 14 ~~~~~~v~~~~~-------~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~ 86 (266)
..++.+++.++. .|++++++.+ .+++++++++.++|++|.+ ++.+.+++|+++|++||+++|+||+|.++
T Consensus 122 ~~~g~~v~~v~~~~~~~~~~d~~~l~~~~--~~~~kli~i~~p~NPtG~~-~~~~~l~~i~~~a~~~~~~ii~De~y~~l 198 (373)
T PRK07324 122 ESLGAEVDYWQLKEENGWLPDLDELRRLV--RPNTKLICINNANNPTGAL-MDRAYLEEIVEIARSVDAYVLSDEVYRPL 198 (373)
T ss_pred HHcCCEEEEEecccccCCCCCHHHHHHhC--CCCCcEEEEeCCCCCCCCC-CCHHHHHHHHHHHHHCCCEEEEEcccccc
Confidence 445677887774 3688888887 4568899998889999987 89999999999999999999999999887
Q ss_pred CCcCcccc-cccCCCCcCeeeeccccc-CCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHhh--ccH
Q psy6547 87 GRTGKLLA-IHYEDVRPDIVILGKALS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILE--ENM 162 (266)
Q Consensus 87 ~~~g~~~~-~~~~~~~~d~~~~sK~~~-~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~--~~~ 162 (266)
...+...+ .+..+....+.++||.++ +| +|+||+++++++++.+.......+++.+.+++.++..+++..+. +..
T Consensus 199 ~~~~~~~s~~~~~~~~I~~~s~SK~~~~~G-~RiG~i~~~~~li~~~~~~~~~~~~~~~~~~q~~a~~~l~~~~~~l~~~ 277 (373)
T PRK07324 199 DEDGSTPSIADLYEKGISTNSMSKTYSLPG-IRVGWIAANEEVIDILRKYRDYTMICAGVFDDMLASLALEHRDAILERN 277 (373)
T ss_pred ccCCCCCChhhccCCEEEEecchhhcCCcc-ceeEEEecCHHHHHHHHHHhCcEEecCChHHHHHHHHHHcCHHHHHHHH
Confidence 44332111 122223344556999999 89 99999999999888887766666777888888888777753221 223
Q ss_pred HHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHH-HCCceeccCC----CCEEEEe
Q psy6547 163 IENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMK-DAGLVTKPIS----NNIIRLS 237 (266)
Q Consensus 163 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~-~~gi~~~~~~----~~~iR~~ 237 (266)
.+.++++++.+.+.|++ .+ .+....+..|. ++++.++. +.+..+|+++|+ ++||.+.|+. .+++|++
T Consensus 278 ~~~~~~~~~~l~~~l~~-~~--~~~~~~p~gg~---~~~i~~~~--~~~~~~~~~~ll~~~gv~v~pg~~F~~~~~iRis 349 (373)
T PRK07324 278 RKIVRTNLAILDEWVAK-EP--RVSYVKPKAVS---TSFVKLDV--DMPSEDFCLKLLKETGVLLVPGNRFDLEGHVRIG 349 (373)
T ss_pred HHHHHHHHHHHHHHHhc-CC--CceEECCCceE---EEEEEeCC--CCCHHHHHHHHHHhcCEEEECccccCCCCeEEEE
Confidence 44455555666666655 22 22221222344 56666654 346788999975 6799999873 4799999
Q ss_pred ccCCCCHHHHHHHHHHHHHHHHHH
Q psy6547 238 PALNITEQELREGLDIIINTINTM 261 (266)
Q Consensus 238 ~~~~~t~~~i~~~~~~l~~~~~~~ 261 (266)
. ..+++.+++++++|.+++++.
T Consensus 350 ~--~~~~~~l~~~l~rl~~~l~~~ 371 (373)
T PRK07324 350 Y--CCDTETLKKGLKKLSEFLREF 371 (373)
T ss_pred e--cCCHHHHHHHHHHHHHHHHhc
Confidence 4 567999999999999998764
No 94
>TIGR01821 5aminolev_synth 5-aminolevulinic acid synthase. This model represents 5-aminolevulinic acid synthase, an enzyme for one of two routes to the heme precursor 5-aminolevulinate. The protein is a pyridoxal phosphate-dependent enzyme related to 2-amino-3-ketobutyrate CoA tranferase and 8-amino-7-oxononanoate synthase. This enzyme appears restricted to the alpha Proteobacteria and mitochondrial derivatives.
Probab=99.93 E-value=5.7e-24 Score=187.07 Aligned_cols=227 Identities=18% Similarity=0.206 Sum_probs=170.4
Q ss_pred CCCceeecCCCHHHHHHHHhcC--CCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEecccc-C-cCCcCcc
Q psy6547 17 MPGYNIIPYNDVDALEAKLKSN--PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQT-G-LGRTGKL 92 (266)
Q Consensus 17 ~~~v~~~~~~d~~~l~~~l~~~--~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~-~-~~~~g~~ 92 (266)
+.+++.++++|++++++++++. +++++|++++++|++|.+. ++++|+++|++||+++|+||+|+ | ++..|..
T Consensus 152 g~~~~~~~~~d~~~l~~~l~~~~~~~~~~v~~e~~~~~~G~~~----~l~~i~~l~~~~~~~livDea~~~G~~g~~g~g 227 (402)
T TIGR01821 152 GAEKFIFRHNDVAHLEKLLQSVDPNRPKIIAFESVYSMDGDIA----PIEEICDLADKYGALTYLDEVHAVGLYGPRGGG 227 (402)
T ss_pred CCeEEEECCCCHHHHHHHHHhccCCCCeEEEEcCCCCCCCCcc----CHHHHHHHHHHcCCEEEEeCcccccccCCCCCc
Confidence 3455678899999999999642 2579999999999999986 79999999999999999999996 4 3444443
Q ss_pred cccccCCC--CcCee--eecccccCCchhhhhheecHHhhhccCCCC--CCCCCCCcHHHHHHHHHHHHHHhhc-cHHHH
Q psy6547 93 LAIHYEDV--RPDIV--ILGKALSGGLYPISAVLADDEVMGTLVPGT--HGSTYGGNPLACKLAMTALDVILEE-NMIEN 165 (266)
Q Consensus 93 ~~~~~~~~--~~d~~--~~sK~~~~g~~~~g~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~a~~~~l~~~~~~-~~~~~ 165 (266)
. ....++ .+|++ ++||++++ ..||+++++++++.+.... ...+.+.++..++++.++|+.++.. .+.++
T Consensus 228 ~-~~~~~~~~~~div~~t~sKa~g~---~GG~i~~~~~~~~~l~~~~~~~~~t~~~~~~~~aaa~aaL~~~~~~~~~~~~ 303 (402)
T TIGR01821 228 I-AERDGLMHRIDIIEGTLAKAFGV---VGGYIAASRKLIDAIRSYAPGFIFTTSLPPAIAAGATASIRHLKESQDLRRA 303 (402)
T ss_pred c-chhccCCCCCeEEEEechhhhcc---CCceeecCHHHHHHHHHhCcCceecCcCCHHHHHHHHHHHHHhhcCHHHHHH
Confidence 2 233343 35666 79999983 1367888888887775322 2234567888899999999987764 35666
Q ss_pred HHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHH-CCceeccC-------CCCEEEEe
Q psy6547 166 AYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKD-AGLVTKPI-------SNNIIRLS 237 (266)
Q Consensus 166 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~-~gi~~~~~-------~~~~iR~~ 237 (266)
..++++++++.|++ ++...+ .+.+. ++.+.++. ...+.+++++|++ +||++++. +.+++|++
T Consensus 304 ~~~~~~~l~~~L~~-~g~~~~----~~~~~---i~~i~~~~--~~~a~~~~~~L~~~~Gi~v~~~~~p~~~~g~~~lRis 373 (402)
T TIGR01821 304 HQENVKRLKNLLEA-LGIPVI----PNPSH---IVPVIIGD--AALCKKVSDLLLNKHGIYVQPINYPTVPRGTERLRIT 373 (402)
T ss_pred HHHHHHHHHHHHHH-cCCCcC----CCCCC---EEEEEeCC--HHHHHHHHHHHHhcCCEEEEeECCCCCCCCCceEEEE
Confidence 77889999999987 543322 22355 77776654 3356789999875 59998752 34689999
Q ss_pred ccCCCCHHHHHHHHHHHHHHHHHH
Q psy6547 238 PALNITEQELREGLDIIINTINTM 261 (266)
Q Consensus 238 ~~~~~t~~~i~~~~~~l~~~~~~~ 261 (266)
+++.+|++|++++++.|+++++++
T Consensus 374 ~~~~~t~edi~~~~~~l~~~~~~~ 397 (402)
T TIGR01821 374 PTPAHTDKMIDDLVEALLLVWDRL 397 (402)
T ss_pred eCCCCCHHHHHHHHHHHHHHHHHc
Confidence 999999999999999999988764
No 95
>PRK13393 5-aminolevulinate synthase; Provisional
Probab=99.93 E-value=6.5e-24 Score=186.86 Aligned_cols=227 Identities=17% Similarity=0.193 Sum_probs=172.7
Q ss_pred CCCceeecCCCHHHHHHHHhcC--CCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEecccc-Cc-CCcCcc
Q psy6547 17 MPGYNIIPYNDVDALEAKLKSN--PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQT-GL-GRTGKL 92 (266)
Q Consensus 17 ~~~v~~~~~~d~~~l~~~l~~~--~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~-~~-~~~g~~ 92 (266)
+.+++.++|+|++++++.+++. +++++|+++++++++|.+. ++++|.++|+++|+++|+||+|+ |+ ++.|..
T Consensus 152 g~~~~~~~~~d~~~l~~~l~~~~~~~~~~v~~~~v~~~~G~~~----~l~~i~~l~~~~~~~livDea~~~g~~g~~G~g 227 (406)
T PRK13393 152 RAEKRIFRHNDPADLERKLSDLDPHRPKLVAFESVYSMDGDIA----PIAEICDVAEKHGAMTYLDEVHAVGLYGPRGGG 227 (406)
T ss_pred CCeEEEeCCCCHHHHHHHHHhccCCCCEEEEEcCCCCCCCchh----CHHHHHHHHHHcCCEEEEECCccccccCCCCCc
Confidence 4567889999999999998642 3678999999999999987 79999999999999999999995 54 666654
Q ss_pred cccccCCCC--cCee--eecccccCCchhhhhheecHHhhhccCCCCCC--CCCCCcHHHHHHHHHHHHHHhhcc-HHHH
Q psy6547 93 LAIHYEDVR--PDIV--ILGKALSGGLYPISAVLADDEVMGTLVPGTHG--STYGGNPLACKLAMTALDVILEEN-MIEN 165 (266)
Q Consensus 93 ~~~~~~~~~--~d~~--~~sK~~~~g~~~~g~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~a~~~~l~~~~~~~-~~~~ 165 (266)
+. ...++. ++++ ++||+++. ..||+++++++.+.+...... .+.+.++..++++.++|+.++... ...+
T Consensus 228 ~~-~~~~~~~~~~i~~~tlsKa~g~---~GG~~~~~~~~~~~l~~~~~~~~~t~~~~p~~~aa~~aaL~~~~~~~~~~~~ 303 (406)
T PRK13393 228 IA-EREGLADRLTIIEGTLAKAFGV---MGGYITGSAALCDFIRSFASGFIFTTSLPPAVAAGALASVRHLKASSAERER 303 (406)
T ss_pred hh-hhcCCCCCCeEEEEeCchhhcc---cCceeeCCHHHHHHHHHhCcCceecCccCHHHHHHHHHHHHHHhhCHHHHHH
Confidence 42 344443 4665 79999983 236788888887776643322 355678888899999999876543 3456
Q ss_pred HHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHH-CCceeccC-------CCCEEEEe
Q psy6547 166 AYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKD-AGLVTKPI-------SNNIIRLS 237 (266)
Q Consensus 166 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~-~gi~~~~~-------~~~~iR~~ 237 (266)
+.++++++++.|++ ++... .++.|. |+.+.+.+ ..++.++.++|++ +||++++. +.+++|++
T Consensus 304 ~~~~~~~l~~~L~~-~g~~~----~~~~~~---i~~v~~~~--~~~~~~l~~~L~~~~Gi~v~~~~~p~~p~g~~~iRis 373 (406)
T PRK13393 304 HQDRVARLRARLDK-AGIPH----LPNPSH---IVPVMVGD--PVLCKQISDELLDRYGIYVQPINYPTVPRGTERLRIT 373 (406)
T ss_pred HHHHHHHHHHHHHH-cCCCc----CCCCCC---eEEEEeCC--HHHHHHHHHHHHHhCCEEEEeECCCCCCCCCceEEEE
Confidence 67888899999887 54322 234455 77776644 3356789999987 59998752 34789999
Q ss_pred ccCCCCHHHHHHHHHHHHHHHHHH
Q psy6547 238 PALNITEQELREGLDIIINTINTM 261 (266)
Q Consensus 238 ~~~~~t~~~i~~~~~~l~~~~~~~ 261 (266)
+++.+|++|+++++++|++++.++
T Consensus 374 ~~~~~t~edid~l~~~l~~~~~~~ 397 (406)
T PRK13393 374 PSPLHTDADIEHLVQALSEIWARL 397 (406)
T ss_pred ECCCCCHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999988764
No 96
>COG0156 BioF 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism]
Probab=99.93 E-value=5e-24 Score=182.44 Aligned_cols=226 Identities=20% Similarity=0.216 Sum_probs=175.9
Q ss_pred CCCCCCceeecCCCHHHHHHHHhcCC----CEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccc-cC-cC
Q psy6547 14 GPHMPGYNIIPYNDVDALEAKLKSNP----NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQ-TG-LG 87 (266)
Q Consensus 14 ~~~~~~v~~~~~~d~~~l~~~l~~~~----~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~-~~-~~ 87 (266)
.....+++.+.|||+++||++|++.+ +.+.|+++.++++.|.+. +|++|.+++++||.++++||+| .| +|
T Consensus 141 rls~a~~~~f~HnD~~~Le~~l~~~~~~~~~~~~IvtegVfSMdGdiA----pL~~l~~L~~ky~a~L~VDEAHa~Gv~G 216 (388)
T COG0156 141 RLSRAEVRRFKHNDLDHLEALLEEARENGARRKLIVTEGVFSMDGDIA----PLPELVELAEKYGALLYVDEAHAVGVLG 216 (388)
T ss_pred HhCCCcEEEecCCCHHHHHHHHHhhhccCCCceEEEEeccccCCCCcC----CHHHHHHHHHHhCcEEEEEccccccccC
Confidence 45677899999999999999997632 368999999999999998 9999999999999999999999 33 45
Q ss_pred CcCcccccccCCCC-----cCeeeecccccCCchhhhhheecHHhhhccCCCC--CCCCCCCcHHHHHHHHHHHHHHhh-
Q psy6547 88 RTGKLLAIHYEDVR-----PDIVILGKALSGGLYPISAVLADDEVMGTLVPGT--HGSTYGGNPLACKLAMTALDVILE- 159 (266)
Q Consensus 88 ~~g~~~~~~~~~~~-----~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~a~~~~l~~~~~- 159 (266)
..|.++. ...|+. .-+.++||+||+. .|++.+++.+.+.+.... ...+-+.+|..++++..+++.+..
T Consensus 217 ~~GrG~~-e~~g~~~~~vdi~~gTlsKAlGs~---Gg~v~g~~~~~d~L~~~ar~~ifStalpP~~aaa~~~al~~l~~~ 292 (388)
T COG0156 217 PNGRGLA-EHFGLEPEEVDIIVGTLGKALGSS---GGYIAGSAALIDYLRNRARPFIFSTALPPAVAAAALAALRILEEG 292 (388)
T ss_pred CCCccHH-HHhCCCCccceEEEEEchhhhccc---CceeeCcHHHHHHHHHhCCceeccCCCCHHHHHHHHHHHHHHHhC
Confidence 5555432 334543 3345599999943 567999999988887542 233334567778888999999886
Q ss_pred ccHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccC-------CCC
Q psy6547 160 ENMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPI-------SNN 232 (266)
Q Consensus 160 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~-------~~~ 232 (266)
.+.++++.++.+.+++.+.. .+... .+..+|++.+.+.+ ...+.++...|+++||.+.+. +..
T Consensus 293 ~~~r~~L~~~~~~~~~~~~~-~~~~~-------~~s~s~I~pv~~gd--~~~a~~~s~~l~~~Gi~v~~i~~PTVp~gta 362 (388)
T COG0156 293 PERRERLQELAAFFRSLLKA-LGLVL-------LPSESPIIPVILGD--EERALEASRALLEEGIYVSAIRPPTVPKGTA 362 (388)
T ss_pred HHHHHHHHHHHHHHHHHHHh-cCCcc-------CCCCCCeeeeEeCC--HHHHHHHHHHHHHCCeeEeeecCCCCCCCcc
Confidence 46888899999999866555 33221 12256799999988 567889999999999998743 457
Q ss_pred EEEEeccCCCCHHHHHHHHHHHHHH
Q psy6547 233 IIRLSPALNITEQELREGLDIIINT 257 (266)
Q Consensus 233 ~iR~~~~~~~t~~~i~~~~~~l~~~ 257 (266)
.+|++++..+|++||+++++.|.+.
T Consensus 363 rlRi~lta~ht~~~I~~l~~~l~~~ 387 (388)
T COG0156 363 RLRITLTAAHTEEDIDRLAEALSEV 387 (388)
T ss_pred eEEEEecCCCCHHHHHHHHHHHHhh
Confidence 8999999999999999999998764
No 97
>PRK07682 hypothetical protein; Validated
Probab=99.93 E-value=1.6e-24 Score=189.08 Aligned_cols=234 Identities=14% Similarity=0.127 Sum_probs=169.0
Q ss_pred cCCCCCCceeecC-------CCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccC
Q psy6547 13 FGPHMPGYNIIPY-------NDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTG 85 (266)
Q Consensus 13 ~~~~~~~v~~~~~-------~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~ 85 (266)
+.-.+.+++.++. .|++++++++ .+++++++++.++|++|.+ ++.+.+++|.++|++||+++|+||+|.+
T Consensus 122 ~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~--~~~~~~v~~~~p~NPtG~~-~s~~~~~~l~~~~~~~~~~ii~De~y~~ 198 (378)
T PRK07682 122 VTLAGGVPVPVATTLENEFKVQPAQIEAAI--TAKTKAILLCSPNNPTGAV-LNKSELEEIAVIVEKHDLIVLSDEIYAE 198 (378)
T ss_pred HHHcCCEEEEeecCCccCCCCCHHHHHhhc--CcccEEEEEECCCCCcCcC-cCHHHHHHHHHHHHHcCcEEEEehhhhh
Confidence 3445566666653 2689999988 3467888776678888876 8999999999999999999999999987
Q ss_pred cCCcCccccc-ccC---CCCcCeeeeccccc-CCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHh--
Q psy6547 86 LGRTGKLLAI-HYE---DVRPDIVILGKALS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVIL-- 158 (266)
Q Consensus 86 ~~~~g~~~~~-~~~---~~~~d~~~~sK~~~-~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~-- 158 (266)
+...+...+. ... .....+.+|||.++ +| +|+||+++++++++.+........++.+++.+.++..+|+...
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G-lR~G~~~~~~~~i~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~ 277 (378)
T PRK07682 199 LTYDEAYTSFASIKGMRERTILISGFSKGFAMTG-WRLGFIAAPVYFSEAMLKIHQYSMMCAPTMAQFAALEALRAGNDD 277 (378)
T ss_pred cccCCCCCChhhcccccCCEEEEecCcccccChh-hhhhhhhcCHHHHHHHHHHHHhhccCCCHHHHHHHHHHHhCChHH
Confidence 7543322111 111 22334555999999 89 9999999999998887654444556678888888888875421
Q ss_pred hccHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHH-HCCceeccC------CC
Q psy6547 159 EENMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMK-DAGLVTKPI------SN 231 (266)
Q Consensus 159 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~-~~gi~~~~~------~~ 231 (266)
.+..+++++++++.+.+.|++ ++. ....+..|. ++|..++.. +.+..+++++|+ ++||.+.|+ +.
T Consensus 278 ~~~~~~~~~~~~~~~~~~L~~-~~~---~~~~p~g~~---~~~~~~~~~-~~~~~~~~~~ll~~~gv~v~pg~~f~~~~~ 349 (378)
T PRK07682 278 VIRMRDSYRKRRNFFVTSFNE-IGL---TCHVPGGAF---YAFPSISST-GLSSEEFAEQLLLEEKVAVVPGSVFGESGE 349 (378)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-CCC---ccCCCCeeE---EEEEeccCC-CCCHHHHHHHHHHhCCEEEcCchhhCcCCC
Confidence 134567778888888888887 432 221223455 666666421 346788998876 789999975 25
Q ss_pred CEEEEeccCCCCHHHHHHHHHHHHHHHHH
Q psy6547 232 NIIRLSPALNITEQELREGLDIIINTINT 260 (266)
Q Consensus 232 ~~iR~~~~~~~t~~~i~~~~~~l~~~~~~ 260 (266)
+++|++.. .+++++++++++|++++++
T Consensus 350 ~~iRis~~--~~~~~l~~~l~~l~~~l~~ 376 (378)
T PRK07682 350 GFIRCSYA--TSLEQLQEAMKRMKRFVEN 376 (378)
T ss_pred CeEEEEeC--CCHHHHHHHHHHHHHHHhh
Confidence 89999954 5799999999999998865
No 98
>PLN00175 aminotransferase family protein; Provisional
Probab=99.93 E-value=1.4e-24 Score=191.13 Aligned_cols=235 Identities=17% Similarity=0.211 Sum_probs=172.3
Q ss_pred ccCCCCCCceeecCC------CHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccC
Q psy6547 12 EFGPHMPGYNIIPYN------DVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTG 85 (266)
Q Consensus 12 ~~~~~~~~v~~~~~~------d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~ 85 (266)
.+...+.+++.++.. |+++|++.+ .++++++++++++|++|.+ ++.+.+++|+++|++||++||+||+|.+
T Consensus 155 ~~~~~g~~~~~v~~~~~~~~~~~~~l~~~~--~~~~k~i~i~~p~NPtG~~-~s~~~l~~l~~~a~~~~~~ii~De~Y~~ 231 (413)
T PLN00175 155 TLSMAGAKIKTVTLRPPDFAVPEDELKAAF--TSKTRAILINTPHNPTGKM-FTREELELIASLCKENDVLAFTDEVYDK 231 (413)
T ss_pred HHHHcCCEEEEEECCcccCCCCHHHHHHhc--CcCceEEEecCCCCCCCcC-CCHHHHHHHHHHHHHcCcEEEEecccCc
Confidence 344567777777642 688999988 4468999988889999977 8999999999999999999999999987
Q ss_pred cCCcCccccc-cc---CCCCcCeeeeccccc-CCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHhh-
Q psy6547 86 LGRTGKLLAI-HY---EDVRPDIVILGKALS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILE- 159 (266)
Q Consensus 86 ~~~~g~~~~~-~~---~~~~~d~~~~sK~~~-~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~- 159 (266)
+...+...+. .. .+....+.+|||.++ +| +|+||+++++++++.+.......+++.+.+.+.++..+|+..+.
T Consensus 232 l~~~~~~~s~~~~~~~~~~vi~i~SfSK~~~~~G-~RiG~~v~~~~l~~~l~~~~~~~~~~~s~~~Q~a~~~~l~~~~~~ 310 (413)
T PLN00175 232 LAFEGDHISMASLPGMYERTVTMNSLGKTFSLTG-WKIGWAIAPPHLTWGVRQAHSFLTFATATPMQWAAVAALRAPESY 310 (413)
T ss_pred cccCCcccChhhCCCCcCcEEEEecchhhccCcc-hheeeeEeCHHHHHHHHHHHhhccCCCCHHHHHHHHHHHhCCHHH
Confidence 6433322111 11 122334455999999 99 99999999999988877655556778888899888888854211
Q ss_pred -ccHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHH-HCCceeccC--------
Q psy6547 160 -ENMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMK-DAGLVTKPI-------- 229 (266)
Q Consensus 160 -~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~-~~gi~~~~~-------- 229 (266)
++..++++++++.+.+.|++ .+ +....+..|. |+|+.+...+..+..+|+++|+ ++||.+.|+
T Consensus 311 ~~~~~~~~~~~~~~l~~~L~~-~g---~~~~~p~g~~---f~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~F~~~~~ 383 (413)
T PLN00175 311 YEELKRDYSAKKDILVEGLKE-VG---FKVYPSSGTY---FVMVDHTPFGFENDIAFCEYLIEEVGVAAIPPSVFYLNPE 383 (413)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-CC---CeecCCCeeE---EEEEeccccCCCCHHHHHHHHHHhCCEEEeCchHhCCCCC
Confidence 34567777888888888877 43 2221223456 7888764211124678999987 569999875
Q ss_pred -CCCEEEEeccCCCCHHHHHHHHHHHHHHHH
Q psy6547 230 -SNNIIRLSPALNITEQELREGLDIIINTIN 259 (266)
Q Consensus 230 -~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~ 259 (266)
+.+++|++.. .+++++++++++|.++++
T Consensus 384 ~~~~~iRls~~--~~~e~l~~~~~rL~~~~~ 412 (413)
T PLN00175 384 DGKNLVRFAFC--KDEETLRAAVERMKTKLK 412 (413)
T ss_pred CCCCEEEEEEc--CCHHHHHHHHHHHHHHHh
Confidence 1368999954 589999999999998875
No 99
>PRK06207 aspartate aminotransferase; Provisional
Probab=99.92 E-value=3.3e-24 Score=188.49 Aligned_cols=243 Identities=14% Similarity=0.132 Sum_probs=171.6
Q ss_pred CcCcccccCCCCCCceeecCC----------CHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCC
Q psy6547 6 DPTSYNEFGPHMPGYNIIPYN----------DVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNV 75 (266)
Q Consensus 6 ~~~~~~~~~~~~~~v~~~~~~----------d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~ 75 (266)
++.....+..++.+++.++.+ |+++|++.++ +++++++++.++|++|.+ ++.+.+++|+++|++||+
T Consensus 136 y~~~~~~~~~~g~~v~~v~~~~~~~~~~~~~d~~~l~~~~~--~~~k~v~l~~P~NPTG~~-~s~e~l~~l~~~a~~~~~ 212 (405)
T PRK06207 136 YFANRKLVEFFEGEMVPVQLDYLSADKRAGLDLDQLEEAFK--AGVRVFLFSNPNNPAGVV-YSAEEIAQIAALARRYGA 212 (405)
T ss_pred chhHHHHHHHcCCEEEEEeccccCcccCCCcCHHHHHHhhh--hcCeEEEECCCCCCCCcC-CCHHHHHHHHHHHHHcCC
Confidence 333334455567777777642 7899999884 357777777778889987 899999999999999999
Q ss_pred EEEEeccccCcCCcCccc-cccc----CCCCcCeeeeccccc-CCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHH
Q psy6547 76 LFIADEVQTGLGRTGKLL-AIHY----EDVRPDIVILGKALS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKL 149 (266)
Q Consensus 76 ~li~De~~~~~~~~g~~~-~~~~----~~~~~d~~~~sK~~~-~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 149 (266)
+||+||+|..+...|..+ .... .+....+.+|||.++ +| +|+||+++++++.+.+.........+.+.+.+.+
T Consensus 213 ~iI~De~Y~~~~~~~~~~~~~~~~~~~~~~vi~i~SfSK~~~lpG-lRiG~ii~~~~l~~~~~~~~~~~~~~~~~~~q~a 291 (405)
T PRK06207 213 TVIVDQLYSRLLYDGTSYTHLRALPIDPENVITIMGPSKTESLSG-YRLGVAFGSPAIIDRMEKLQAIVSLRAAGYSQAV 291 (405)
T ss_pred EEEEeccccccccCCCCCCchhcCCCCcCcEEEEecchhhccCcc-cceEEEEcCHHHHHHHHHHHhHhccCCCHHHHHH
Confidence 999999998774434321 1111 122344555999999 99 9999999999988887654444455566677888
Q ss_pred HHHHHHHHh--hccHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHH-HCCcee
Q psy6547 150 AMTALDVIL--EENMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMK-DAGLVT 226 (266)
Q Consensus 150 ~~~~l~~~~--~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~-~~gi~~ 226 (266)
+..+++.-. -++..++++++++.+.+.|++ +. .+....+..|+ |+|+.++.. ..+..+++++|+ ++||.+
T Consensus 292 ~~~~l~~~~~~~~~~~~~~~~~r~~l~~~L~~-~~--~~~~~~p~gg~---fl~~~l~~~-~~~~~~~~~~l~~~~gV~v 364 (405)
T PRK06207 292 LRTWFSEPDGWMKDRIARHQAIRDDLLRVLRG-VE--GVFVRAPQAGS---YLFPRLPRL-AVSLHDFVKILRLQAGVIV 364 (405)
T ss_pred HHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhc-CC--CceecCCCeeE---EEEEeCccc-CCCHHHHHHHHHHhcCEEE
Confidence 777775311 123344555566666666665 32 23321234577 999998741 235788999997 689999
Q ss_pred ccCC------CCEEEEeccCCCCHHHHHHHHHHHHHHHHHH
Q psy6547 227 KPIS------NNIIRLSPALNITEQELREGLDIIINTINTM 261 (266)
Q Consensus 227 ~~~~------~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~ 261 (266)
.|+. .+++|++.. .+++++++++++|.+++++.
T Consensus 365 ~pG~~F~~~~~~~~Ris~~--~~~~~l~~al~rl~~~l~~~ 403 (405)
T PRK06207 365 TPGTEFSPHTADSIRLNFS--QDHAAAVAAAERIAQLIERY 403 (405)
T ss_pred eCchHhCCCCCCeEEEEec--CCHHHHHHHHHHHHHHHHHh
Confidence 9852 579999955 58999999999999998764
No 100
>PRK07681 aspartate aminotransferase; Provisional
Probab=99.92 E-value=2.5e-24 Score=189.14 Aligned_cols=237 Identities=15% Similarity=0.166 Sum_probs=174.1
Q ss_pred CCcCcccccCCCCCCceeecCC-------CHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEE
Q psy6547 5 TDPTSYNEFGPHMPGYNIIPYN-------DVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLF 77 (266)
Q Consensus 5 ~~~~~~~~~~~~~~~v~~~~~~-------d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~l 77 (266)
++|.+...+..++.+++.++.+ |++++++.+ .+++++++++.++|++|.+ ++.+.+++|.++|++||++|
T Consensus 126 ~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~~--~~~~k~v~l~~P~NPTG~~-~s~~~~~~i~~~a~~~~~~i 202 (399)
T PRK07681 126 GYTAYETGIQMAGATSYYMPLKKENDFLPDLELIPEEI--ADKAKMMILNFPGNPVPAM-AHEDFFKEVIAFAKKHNIIV 202 (399)
T ss_pred CccchHHHHHhcCCEEEEEecCCCCCCcCCHHHHHHhc--cccceEEEEeCCCCCcCcC-CCHHHHHHHHHHHHHcCeEE
Confidence 4455555566778888888753 578888777 3467888888678888977 89999999999999999999
Q ss_pred EEeccccCcCCcCcc-ccc-cc---CCCCcCeeeeccccc-CCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHH
Q psy6547 78 IADEVQTGLGRTGKL-LAI-HY---EDVRPDIVILGKALS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAM 151 (266)
Q Consensus 78 i~De~~~~~~~~g~~-~~~-~~---~~~~~d~~~~sK~~~-~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 151 (266)
|+||+|.++...+.. ... .. .+....+.+|||.++ +| +|+||+++++++++.+........++.+.+.+.++.
T Consensus 203 I~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G-lRiG~~i~~~~l~~~~~~~~~~~~~~~s~~~q~~~~ 281 (399)
T PRK07681 203 VHDFAYAEFYFDGNKPISFLSVPGAKEVGVEINSLSKSYSLAG-SRIGYMIGNEEIVRALTQFKSNTDYGVFLPIQKAAC 281 (399)
T ss_pred EEeccchhheeCCCCCCChhhCCCCcccEEEEeecccccCCcc-ceeEEEecCHHHHHHHHHHHhhcccCCCHHHHHHHH
Confidence 999999876433321 111 11 123344566999998 99 999999999999888876555556778888888888
Q ss_pred HHHHHHhh--ccHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHH-CCceecc
Q psy6547 152 TALDVILE--ENMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKD-AGLVTKP 228 (266)
Q Consensus 152 ~~l~~~~~--~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~-~gi~~~~ 228 (266)
.+++.... +...+.++++++.+.+.|++ .+ +....+..|. ++|+.++. +.+..+++.+|++ +||.+.|
T Consensus 282 ~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~-~g---~~~~~p~~g~---f~~~~l~~--~~~~~~~~~~l~~~~gv~v~p 352 (399)
T PRK07681 282 AALRNGAAFCEKNRGIYQERRDTLVDGFRT-FG---WNVDKPAGSM---FVWAEIPK--GWTSLSFAYALMDRANVVVTP 352 (399)
T ss_pred HHHhCcHHHHHHHHHHHHHHHHHHHHHHHH-CC---CcccCCCeee---EEEEECCC--CCCHHHHHHHHHHhCCEEEeC
Confidence 77754211 23455666677777777776 43 2221234577 99999876 5667889999887 8999988
Q ss_pred C------CCCEEEEeccCCCCHHHHHHHHHHHHH
Q psy6547 229 I------SNNIIRLSPALNITEQELREGLDIIIN 256 (266)
Q Consensus 229 ~------~~~~iR~~~~~~~t~~~i~~~~~~l~~ 256 (266)
+ +.+++|++.. .+++++++++++|++
T Consensus 353 g~~f~~~~~~~iRis~~--~~~~~~~~~l~~l~~ 384 (399)
T PRK07681 353 GHAFGPHGEGFVRIALV--QDEEVLQQAVENIRN 384 (399)
T ss_pred ChhhCcCCCCeEEEEec--CCHHHHHHHHHHHHH
Confidence 5 2469999955 678999999999987
No 101
>PRK06108 aspartate aminotransferase; Provisional
Probab=99.92 E-value=3.3e-24 Score=187.34 Aligned_cols=236 Identities=16% Similarity=0.173 Sum_probs=171.6
Q ss_pred ccccCCCCCCceeecCC--------CHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEec
Q psy6547 10 YNEFGPHMPGYNIIPYN--------DVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADE 81 (266)
Q Consensus 10 ~~~~~~~~~~v~~~~~~--------d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De 81 (266)
...+...+.+++.++.+ |++++++.+ .++++++++++++|++|.+ ++.+.+++|.++|+++|+++|+||
T Consensus 122 ~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~~--~~~~~~i~l~~p~NPtG~~-~~~~~~~~l~~~~~~~~~~li~De 198 (382)
T PRK06108 122 VAAPKILGARVVCVPLDFGGGGWTLDLDRLLAAI--TPRTRALFINSPNNPTGWT-ASRDDLRAILAHCRRHGLWIVADE 198 (382)
T ss_pred HHHHHHCCCEEEEeeCCCCCCCccCCHHHHHHhc--CccceEEEEECCCCCCCcc-cCHHHHHHHHHHHHHCCcEEEEeh
Confidence 33345567788888763 578998888 3467888887788888877 899999999999999999999999
Q ss_pred cccCcCCc-Ccc-cc-cccC---CCCcCeeeeccccc-CCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHHH
Q psy6547 82 VQTGLGRT-GKL-LA-IHYE---DVRPDIVILGKALS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTAL 154 (266)
Q Consensus 82 ~~~~~~~~-g~~-~~-~~~~---~~~~d~~~~sK~~~-~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l 154 (266)
+|.++... +.. .. .... +....+.++||.++ +| +|+||+++++++.+.+.......+.+.+++.+.++..+|
T Consensus 199 ~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G-~RiG~~~~~~~~~~~~~~~~~~~~~~~~~~~q~a~~~~l 277 (382)
T PRK06108 199 VYERLYYAPGGRAPSFLDIAEPDDRIIFVNSFSKNWAMTG-WRLGWLVAPPALGQVLEKLIEYNTSCVAQFVQRAAVAAL 277 (382)
T ss_pred hhhhhccCCCCCCCCHhhcCCCcCCEEEEeechhhccCcc-cceeeeeCCHHHHHHHHHHHHhcccCCChHHHHHHHHHH
Confidence 99876432 111 11 1111 12233445999998 88 999999999988887765444445667888888888888
Q ss_pred HHHhh--ccHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHH-HCCceeccC--
Q psy6547 155 DVILE--ENMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMK-DAGLVTKPI-- 229 (266)
Q Consensus 155 ~~~~~--~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~-~~gi~~~~~-- 229 (266)
+.... +++.++++++++.+.+.|++ +. .+....+..|+ ++|+.++. ..+..+++++|+ ++||.+.|+
T Consensus 278 ~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~--~~~~~~p~~g~---~~~~~l~~--~~~~~~~~~~ll~~~gV~v~pg~~ 349 (382)
T PRK06108 278 DEGEDFVAELVARLRRSRDHLVDALRA-LP--GVEVAKPDGAM---YAFFRIPG--VTDSLALAKRLVDEAGLGLAPGTA 349 (382)
T ss_pred hCChHHHHHHHHHHHHHHHHHHHHHHh-CC--CCcccCCCeeE---EEEEeCCC--CCCHHHHHHHHHHhCCEEEeCchh
Confidence 64321 34677778888888888876 42 22221223466 77888875 446788999886 679999875
Q ss_pred ----CCCEEEEeccCCCCHHHHHHHHHHHHHHHH
Q psy6547 230 ----SNNIIRLSPALNITEQELREGLDIIINTIN 259 (266)
Q Consensus 230 ----~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~ 259 (266)
+.+++|++++. +++++++++++|.++++
T Consensus 350 f~~~~~~~~Ris~~~--~~~~l~~~l~~l~~~l~ 381 (382)
T PRK06108 350 FGPGGEGFLRWCFAR--DPARLDEAVERLRRFLA 381 (382)
T ss_pred hCCCCCCEEEEEecC--CHHHHHHHHHHHHHHHh
Confidence 25799999775 89999999999998764
No 102
>PRK05957 aspartate aminotransferase; Provisional
Probab=99.92 E-value=5.5e-24 Score=186.32 Aligned_cols=239 Identities=13% Similarity=0.198 Sum_probs=173.3
Q ss_pred cCCCCCCceeecCC-----CHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcC
Q psy6547 13 FGPHMPGYNIIPYN-----DVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLG 87 (266)
Q Consensus 13 ~~~~~~~v~~~~~~-----d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~ 87 (266)
+...+.+++.++.+ |+++|++.+ .++++++++.+++|++|.+ ++.+.+++|.++|+++|+++|+||+|.++.
T Consensus 130 ~~~~g~~~~~v~~~~~~~~d~~~l~~~i--~~~~klv~~~~p~NPtG~~-~~~~~~~~i~~~a~~~~~~li~De~y~~~~ 206 (389)
T PRK05957 130 ITMAGCQPILVPTDDNYQLQPEAIEQAI--TPKTRAIVTISPNNPTGVV-YPEALLRAVNQICAEHGIYHISDEAYEYFT 206 (389)
T ss_pred HHhcCCEEEEeecCCCCCcCHHHHHHhc--CcCceEEEEeCCCCCCCcC-cCHHHHHHHHHHHHHcCcEEEEeccchhcc
Confidence 34556677777643 689999988 4468888888888889987 899999999999999999999999998764
Q ss_pred CcCcc-cc-c---ccCCCCcCeeeeccccc-CCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHh--h
Q psy6547 88 RTGKL-LA-I---HYEDVRPDIVILGKALS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVIL--E 159 (266)
Q Consensus 88 ~~g~~-~~-~---~~~~~~~d~~~~sK~~~-~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~--~ 159 (266)
..+.. .. . +.......+.+|||.++ +| +|+||+++++++++.+.........+.+.+++.++..+++.-. -
T Consensus 207 ~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G-lRiG~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~ 285 (389)
T PRK05957 207 YDGVKHFSPGSIPGSGNHTISLYSLSKAYGFAS-WRIGYMVIPIHLLEAIKKIQDTILICPPVVSQYAALGALQVGKSYC 285 (389)
T ss_pred CCCCCccChhhCCCccCcEEEEecchhhccCcc-ceeEEEecCHHHHHHHHHHHhhcccCCCcHHHHHHHHHHhCChHHH
Confidence 33211 11 1 11122344566999998 89 9999999999998888765444445566678887777775311 1
Q ss_pred ccHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHH-HCCceeccCC------CC
Q psy6547 160 ENMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMK-DAGLVTKPIS------NN 232 (266)
Q Consensus 160 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~-~~gi~~~~~~------~~ 232 (266)
++..++++++++.+.+.|++ ++.. +.......|+ ++|+.++. +.+..+++++|. ++||.+.|+. .+
T Consensus 286 ~~~~~~~~~~r~~l~~~L~~-~~~~-~~~~~~~gg~---~~~~~~~~--~~~~~~~~~~l~~~~gv~v~pg~~f~~~~~~ 358 (389)
T PRK05957 286 QQHLPEIAQVRQILLKSLGQ-LQDR-CTLHPANGAF---YCFLKVNT--DLNDFELVKQLIREYRVAVIPGTTFGMKNGC 358 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHh-cCCC-ccccCCCeeE---EEEEeCCC--CCChHHHHHHHHHHCCEEEccchhhCCCCCC
Confidence 33455677777778788876 4321 1221233467 88988876 567889999987 5899999862 35
Q ss_pred EEEEeccCCCCHHHHHHHHHHHHHHHHHHhh
Q psy6547 233 IIRLSPALNITEQELREGLDIIINTINTMAA 263 (266)
Q Consensus 233 ~iR~~~~~~~t~~~i~~~~~~l~~~~~~~~~ 263 (266)
++|++.+. .+++++++++++|.+.++++..
T Consensus 359 ~iRis~~~-~~~~~l~~~~~~l~~~~~~~~~ 388 (389)
T PRK05957 359 YLRIAYGA-LQKATAKEGIERLVQGLKTIVQ 388 (389)
T ss_pred EEEEEEec-CCHHHHHHHHHHHHHHHHhhhc
Confidence 89999653 4789999999999999988654
No 103
>PRK06348 aspartate aminotransferase; Provisional
Probab=99.92 E-value=9.1e-24 Score=184.66 Aligned_cols=232 Identities=19% Similarity=0.217 Sum_probs=166.8
Q ss_pred cCCCCCCceeecC-------CCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccC
Q psy6547 13 FGPHMPGYNIIPY-------NDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTG 85 (266)
Q Consensus 13 ~~~~~~~v~~~~~-------~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~ 85 (266)
+.-.+..++.++. .|+++|++.++ +++++++++.++|++|.+ ++.+.+++|.++|++||++||+||+|.+
T Consensus 130 ~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~--~~~~~v~l~~p~NPtG~~-~s~~~~~~l~~~a~~~~~~ii~De~y~~ 206 (384)
T PRK06348 130 IEMVGGKPIILETYEEDGFQINVKKLEALIT--SKTKAIILNSPNNPTGAV-FSKETLEEIAKIAIEYDLFIISDEVYDG 206 (384)
T ss_pred HHHcCCEEEEecCCcCcCCcCCHHHHHHhhC--cCccEEEEeCCCCCCCcC-CCHHHHHHHHHHHHHCCeEEEEeccccc
Confidence 3444556676652 36899999883 457888877778888877 8999999999999999999999999987
Q ss_pred cCCcCcccc---ccc-CCCCcCeeeeccccc-CCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHhh-
Q psy6547 86 LGRTGKLLA---IHY-EDVRPDIVILGKALS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILE- 159 (266)
Q Consensus 86 ~~~~g~~~~---~~~-~~~~~d~~~~sK~~~-~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~- 159 (266)
+...+.... +.. .+....+.+|||.++ +| +|+||+++++++.+.+........++.+++.+.++..+++..+.
T Consensus 207 ~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~l~G-lRiG~~v~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~ 285 (384)
T PRK06348 207 FSFYEDFVPMATLAGMPERTITFGSFSKDFAMTG-WRIGYVIAPDYIIETAKIINEGICFSAPTISQRAAIYALKHRDTI 285 (384)
T ss_pred ceeCCCccchhhcCCCcCcEEEEecchhccCCcc-ccceeeecCHHHHHHHHHHHHhccCCCCHHHHHHHHHHHhCcHHH
Confidence 643222111 111 122334555999999 99 99999999999888777555556677888898888888764321
Q ss_pred -ccHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHH-HCCceeccC------CC
Q psy6547 160 -ENMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMK-DAGLVTKPI------SN 231 (266)
Q Consensus 160 -~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~-~~gi~~~~~------~~ 231 (266)
+.+.+.++++.+.+.+.|+. ++. +.......|. ++|+.++.. +.+..++++.|+ ++||.+.|+ +.
T Consensus 286 ~~~~~~~~~~r~~~~~~~L~~-~~~--~~~~~p~gg~---~~~~~~~~~-~~~~~~l~~~l~~~~gv~v~pg~~f~~~~~ 358 (384)
T PRK06348 286 VPLIKEEFQKRLEYAYKRIES-IPN--LSLHPPKGSI---YAFINIKKT-GLSSVEFCEKLLKEAHVLVIPGKAFGESGE 358 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHhc-CCC--ceeccCCeeE---EEEEecccC-CCCHHHHHHHHHHhCCEEEcCchhhccCCC
Confidence 23556667777778888876 432 2221223466 778888631 346788999886 579999975 24
Q ss_pred CEEEEeccCCCCHHHHHHHHHHHHHH
Q psy6547 232 NIIRLSPALNITEQELREGLDIIINT 257 (266)
Q Consensus 232 ~~iR~~~~~~~t~~~i~~~~~~l~~~ 257 (266)
+++|++. ..+++++++++++|.+.
T Consensus 359 ~~iRi~~--~~~~~~l~~al~~l~~~ 382 (384)
T PRK06348 359 GYIRLAC--TVGIEVLEEAFNRIEKM 382 (384)
T ss_pred CeEEEEe--cCCHHHHHHHHHHHHhh
Confidence 7999995 46899999999998753
No 104
>PRK06225 aspartate aminotransferase; Provisional
Probab=99.91 E-value=1.5e-23 Score=183.17 Aligned_cols=234 Identities=13% Similarity=0.164 Sum_probs=165.9
Q ss_pred CCCCCceeecC--------CCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCc
Q psy6547 15 PHMPGYNIIPY--------NDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGL 86 (266)
Q Consensus 15 ~~~~~v~~~~~--------~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~ 86 (266)
-.+.+++.++. .|++++++.+ .++++++++..++|++|.+ ++.+++++|.++|+++|+++|+||+|.+|
T Consensus 126 ~~g~~~~~v~~~~~~~~~~~d~~~l~~~~--~~~~~~v~l~~p~NptG~~-~~~~~~~~i~~~a~~~~~~ii~De~y~~~ 202 (380)
T PRK06225 126 RFGAEVIEVPIYSEECNYKLTPELVKENM--DENTRLIYLIDPLNPLGSS-YTEEEIKEFAEIARDNDAFLLHDCTYRDF 202 (380)
T ss_pred HhCceEEeeccccccCCccCCHHHHHhhc--CCCceEEEEeCCCCCCCcC-CCHHHHHHHHHHHHHCCcEEEEehhHHHH
Confidence 34667777763 2678899888 4467888866667788876 89999999999999999999999999776
Q ss_pred CCcCcccccc-cCCCCcCeeeeccccc-CCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHhh--ccH
Q psy6547 87 GRTGKLLAIH-YEDVRPDIVILGKALS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILE--ENM 162 (266)
Q Consensus 87 ~~~g~~~~~~-~~~~~~d~~~~sK~~~-~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~--~~~ 162 (266)
.. +...... ......++.++||.++ +| +|+||+++++++++.+.... ..+++.+.+++.++..+++.... +..
T Consensus 203 ~~-~~~~~~~~~~~~~i~~~s~SK~~g~~G-~RiG~i~~~~~l~~~~~~~~-~~~~~~~~~~~~~a~~~l~~~~~~~~~~ 279 (380)
T PRK06225 203 AR-EHTLAAEYAPEHTVTSYSFSKIFGMAG-LRIGAVVATPDLIEVVKSIV-INDLGTNVIAQEAAIAGLKVKDEWIDRI 279 (380)
T ss_pred hc-cCCchhhcCCCCEEEEeechhhcCCcc-ceeEEEecCHHHHHHHHHHH-hcccCCCHHHHHHHHHHHhcchHHHHHH
Confidence 32 2211111 1123445667999998 88 99999999999888776532 34566788888887777754211 223
Q ss_pred HHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccC-------CCCEEE
Q psy6547 163 IENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPI-------SNNIIR 235 (266)
Q Consensus 163 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~-------~~~~iR 235 (266)
.+.++++.+.+.+.|++ +....+.. .+..|. ++|+.++.. +.+..+++++|.++||.+.++ +.+++|
T Consensus 280 ~~~~~~~~~~l~~~L~~-~~~~~~~~-~~~~g~---~~~~~~~~~-~~~~~~l~~~l~~~gi~v~~g~~~~~~~~~~~iR 353 (380)
T PRK06225 280 RRTTFKNQKLIKEAVDE-IEGVFLPV-YPSHGN---MMVIDISEA-GIDPEDLVEYLLERKIFVRQGTYTSKRFGDRYIR 353 (380)
T ss_pred HHHHHHHHHHHHHHHHh-CcCCcccc-CCCCCe---EEEEEcccc-cCCHHHHHHHHHHCCEEEcCCcccCcCCCCceEE
Confidence 34445556666667766 32211222 234566 888887642 246789999999999999875 246899
Q ss_pred EeccCCCCHHHHHHHHHHHHHHHHHHh
Q psy6547 236 LSPALNITEQELREGLDIIINTINTMA 262 (266)
Q Consensus 236 ~~~~~~~t~~~i~~~~~~l~~~~~~~~ 262 (266)
++. ..+++++++++++|+++++++.
T Consensus 354 ~s~--~~~~e~l~~~~~~l~~~~~~~~ 378 (380)
T PRK06225 354 VSF--SIPREQVEVFCEEFPDVVETLR 378 (380)
T ss_pred EEe--CCCHHHHHHHHHHHHHHHHHhh
Confidence 995 4589999999999999998753
No 105
>PRK15481 transcriptional regulatory protein PtsJ; Provisional
Probab=99.91 E-value=7.6e-24 Score=187.82 Aligned_cols=238 Identities=16% Similarity=0.104 Sum_probs=171.7
Q ss_pred CcCcccccCCCCCCceeecCC----CHHHHHHHHhcCCCEEEEEEcc-ccCCCCcccCChHHHHHHHHHHHhc-CCEEEE
Q psy6547 6 DPTSYNEFGPHMPGYNIIPYN----DVDALEAKLKSNPNICAFMVEP-IQGEAGAVVPDDGYLKKVRALCSQY-NVLFIA 79 (266)
Q Consensus 6 ~~~~~~~~~~~~~~v~~~~~~----d~~~l~~~l~~~~~~~~i~~~~-~~~~~g~~~~~~~~l~~l~~l~~~~-g~~li~ 79 (266)
++.+...+...+.+++.++.+ |+++|+++++. ++++++++| ++||+|.+ ++.+.+++|.++|+++ +++||+
T Consensus 175 y~~~~~~~~~~g~~~~~v~~~~~g~~~~~l~~~~~~--~~k~i~~~p~p~NPTG~~-~s~~~~~~l~~la~~~~~~~ii~ 251 (431)
T PRK15481 175 FLSSINMLRYAGFSASPVSVDAEGMQPEKLERALAQ--GARAVILTPRAHNPTGCS-LSARRAAALRNLLARYPQVLVII 251 (431)
T ss_pred cHHHHHHHHHcCCeEEeeccCCCCCCHHHHHHHHhc--CCCEEEECCCCCCCCCcc-CCHHHHHHHHHHHHhcCCceEEe
Confidence 334445566777888888753 68999998843 578888885 67777776 8999999999999999 999999
Q ss_pred eccccCcCCcCcccccc-cCCCCcCeeeecccccCCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHh
Q psy6547 80 DEVQTGLGRTGKLLAIH-YEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVIL 158 (266)
Q Consensus 80 De~~~~~~~~g~~~~~~-~~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~ 158 (266)
||+|..|...+...... .......+-+|||.+++| +|+||+++++++.+.+.......+++.+.+++.++..+|+.-.
T Consensus 252 De~Y~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~~G-lRiG~~i~~~~~~~~~~~~~~~~~~~~s~~~q~a~~~~l~~~~ 330 (431)
T PRK15481 252 DDHFALLSSSPYHSVIPQTTQRWALIRSVSKALGPD-LRLAFVASDSATSARLRLRLNSGTQWVSHLLQDLVYACLTDPE 330 (431)
T ss_pred cCchhhhccCCCCCCCcCCCCCEEEEeeeccccCCC-ceeEEEeCCHHHHHHHHHHHhccccCCCHHHHHHHHHHHhCcc
Confidence 99998774322111111 112233445599999999 9999999999888877643344445678888888888886321
Q ss_pred h----ccHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccCC----
Q psy6547 159 E----ENMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPIS---- 230 (266)
Q Consensus 159 ~----~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~---- 230 (266)
- ++..+.++++++.+.+.|++ .+ +....+..|+ |+|+.++. +..++++.|.++||.+.|+.
T Consensus 331 ~~~~l~~~~~~~~~~r~~~~~~L~~-~~---~~~~~p~gg~---f~~~~l~~----~~~~~~~~l~~~gV~v~pg~~f~~ 399 (431)
T PRK15481 331 YQARLAQARLFYAQRRQKLARALQQ-YG---IAIPSPGDGL---NLWLPLDT----DSQATALTLAKSGWLVREGEAFGV 399 (431)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-cC---CccccCCCeE---EEEEECCC----CHHHHHHHHHHCCcEEecCCcccc
Confidence 1 23455666677777777766 32 2221345678 99998875 46789999999999999851
Q ss_pred ---CCEEEEeccCCCCHHHHHHHHHHHHHHHH
Q psy6547 231 ---NNIIRLSPALNITEQELREGLDIIINTIN 259 (266)
Q Consensus 231 ---~~~iR~~~~~~~t~~~i~~~~~~l~~~~~ 259 (266)
.+++|++... .+++++++++++|.++++
T Consensus 400 ~~~~~~iRis~~~-~~~~~i~~~~~~l~~~~~ 430 (431)
T PRK15481 400 SAPSHGLRITLST-LNDAEINRLAADLHQALN 430 (431)
T ss_pred CCCCCeEEEEcCC-CChHHHHHHHHHHHHHhc
Confidence 2589999664 478999999999999875
No 106
>PRK13392 5-aminolevulinate synthase; Provisional
Probab=99.91 E-value=1.1e-22 Score=179.27 Aligned_cols=228 Identities=16% Similarity=0.205 Sum_probs=168.3
Q ss_pred CCCCceeecCCCHHHHHHHHhcC--CCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEecccc-C-cCCcCc
Q psy6547 16 HMPGYNIIPYNDVDALEAKLKSN--PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQT-G-LGRTGK 91 (266)
Q Consensus 16 ~~~~v~~~~~~d~~~l~~~l~~~--~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~-~-~~~~g~ 91 (266)
.+.++..++++|.+++++.+++. +++++|++++++|++|.+. ++++|.++|++||+++|+||+|+ | ++..|.
T Consensus 152 ~g~~~~~~~~~d~~~l~~~l~~~~~~~t~~v~i~~~~n~tG~~~----~l~~i~~l~~~~~~~livDea~~~g~~g~~g~ 227 (410)
T PRK13392 152 SGAEKQVFRHNDLADLEEQLASVDPDRPKLIAFESVYSMDGDIA----PIEAICDLADRYNALTYVDEVHAVGLYGARGG 227 (410)
T ss_pred cCCeEEEEeCCCHHHHHHHHHhccCCCCEEEEEeCCCCCCcccc----cHHHHHHHHHHcCCEEEEECCccccCcCCCCC
Confidence 45567778888999999888642 3689999999999999886 69999999999999999999996 4 344444
Q ss_pred ccccccCCC--CcCee--eecccccCCchhhhhheecHHhhhccCCCCC--CCCCCCcHHHHHHHHHHHHHHhhc-cHHH
Q psy6547 92 LLAIHYEDV--RPDIV--ILGKALSGGLYPISAVLADDEVMGTLVPGTH--GSTYGGNPLACKLAMTALDVILEE-NMIE 164 (266)
Q Consensus 92 ~~~~~~~~~--~~d~~--~~sK~~~~g~~~~g~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~a~~~~l~~~~~~-~~~~ 164 (266)
.+ ....++ .+|++ ++||+++. ..||+++++++++.++.... ..+.+.+++.++++.++|+.+... ...+
T Consensus 228 g~-~~~~~~~~~~div~~tlsK~~g~---~GG~~~~~~~~~~~l~~~~~~~~~s~~~~~~~~~a~~aaL~~~~~~~~~~~ 303 (410)
T PRK13392 228 GI-AERDGLMDRIDMIQGTLAKAFGC---LGGYIAASADLIDFVRSFAPGFIFTTALPPAVAAGATAAIRHLKTSQTERD 303 (410)
T ss_pred ch-hhhccCCCCCcEEEEEChHhhhc---ccchhhcCHHHHHHHHHhCcchhccCcCCHHHHHHHHHHHHHHhcCHHHHH
Confidence 32 222232 34555 69999973 24788888888886654322 224445667888888999877653 3556
Q ss_pred HHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHH-HCCceeccC-------CCCEEEE
Q psy6547 165 NAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMK-DAGLVTKPI-------SNNIIRL 236 (266)
Q Consensus 165 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~-~~gi~~~~~-------~~~~iR~ 236 (266)
++.++++++++.|++ ++.... .+.+. ++.+.++. ..+..+++++|+ ++||++.+. +..++|+
T Consensus 304 ~~~~~~~~l~~~L~~-~g~~~~----~~~~~---~~~i~~~~--~~~~~~~~~~L~~~~GI~v~~~~~p~~~~~~~~lRi 373 (410)
T PRK13392 304 AHQDRVAALKAKLNA-NGIPVM----PSPSH---IVPVMVGD--PTLCKAISDRLMSEHGIYIQPINYPTVPRGTERLRI 373 (410)
T ss_pred HHHHHHHHHHHHHHH-cCCCCC----CCCCC---EEEEEeCC--HHHHHHHHHHHHHhCCEEEeeeCCCCCCCCCceEEE
Confidence 678888999998887 543222 23344 76666654 335678999986 679999853 3368999
Q ss_pred eccCCCCHHHHHHHHHHHHHHHHHH
Q psy6547 237 SPALNITEQELREGLDIIINTINTM 261 (266)
Q Consensus 237 ~~~~~~t~~~i~~~~~~l~~~~~~~ 261 (266)
+++..+|++|++++++.|+++++++
T Consensus 374 s~~~~~t~edid~l~~aL~~~~~~~ 398 (410)
T PRK13392 374 TPTPLHDDEDIDALVAALVAIWDRL 398 (410)
T ss_pred EECCCCCHHHHHHHHHHHHHHHHHc
Confidence 9999999999999999999987754
No 107
>PRK07366 succinyldiaminopimelate transaminase; Validated
Probab=99.91 E-value=2e-23 Score=182.78 Aligned_cols=240 Identities=13% Similarity=0.146 Sum_probs=164.2
Q ss_pred CCcCcccccCCCCCCceeecCC-------CHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEE
Q psy6547 5 TDPTSYNEFGPHMPGYNIIPYN-------DVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLF 77 (266)
Q Consensus 5 ~~~~~~~~~~~~~~~v~~~~~~-------d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~l 77 (266)
+++.+...+...+.+++.++.+ |++++++.+ .++++++++++++|++|.+ ++.+.+++|.++|++||++|
T Consensus 125 ~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~--~~~~k~i~l~~p~NPTG~~-~s~~~~~~l~~~a~~~~~~i 201 (388)
T PRK07366 125 GYPSHAGGVYLAGGQIYPMPLRAENDFLPVFADIPTEV--LAQARLMVLSYPHNPTTAI-APLSFFQEAVAFCQQHDLVL 201 (388)
T ss_pred CCcchHHHHHhcCCEEEEEECCCccCCCCCHHHHHHhh--cccceEEEEeCCCCCCCcc-CCHHHHHHHHHHHHHcCeEE
Confidence 3444555566778888888753 356666665 3357888888888999987 89999999999999999999
Q ss_pred EEeccccCcCCcCc--ccccccC----CCCcCeeeeccccc-CCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHH
Q psy6547 78 IADEVQTGLGRTGK--LLAIHYE----DVRPDIVILGKALS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLA 150 (266)
Q Consensus 78 i~De~~~~~~~~g~--~~~~~~~----~~~~d~~~~sK~~~-~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 150 (266)
|+||+|..|...+. ....... .....+.+|||.++ +| +|+||+++++++++.+........++..+..+.++
T Consensus 202 i~De~Y~~~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~g~~G-lRiG~~v~~~~li~~l~~~~~~~~~~~~~~~~~~a 280 (388)
T PRK07366 202 VHDFPYVDLVFDGEVEPPSILQADPEKSVSIEFFTLSKSYNMGG-FRIGFAIGNAQLIQALRQVKAVVDFNQYRGILNGA 280 (388)
T ss_pred EEecchhhcccCCCCCCCChhhCCCCcccEEEEeecccccCCcc-hhheehcCCHHHHHHHHHHHhhcccCCCHHHHHHH
Confidence 99999987743332 1111111 11233456999997 99 99999999999988776543333333333334444
Q ss_pred HHHHHHHhh--ccHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHH-HHCCceec
Q psy6547 151 MTALDVILE--ENMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKM-KDAGLVTK 227 (266)
Q Consensus 151 ~~~l~~~~~--~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l-~~~gi~~~ 227 (266)
.+++..... +...+.++++++.+.+.|++ .+ +....+..|+ |+|+.++.....+..+++++| .++||.+.
T Consensus 281 ~~~l~~~~~~l~~~~~~~~~~r~~l~~~L~~-~~---~~~~~p~~g~---f~~~~~~~~~~~~~~~~~~~l~~~~gv~v~ 353 (388)
T PRK07366 281 IAALTGPQATVQQTVQIFRQRRDAFINALHQ-IG---WPVPLPEATM---YVWAKLPEPWQGNSVEFCTQLVAQTGVAAS 353 (388)
T ss_pred HHHHhCcHHHHHHHHHHHHHHHHHHHHHHHH-CC---CcccCCCeeE---EEEEECCcccCCCHHHHHHHHHHhCCEEEe
Confidence 555531111 34566677777778787776 43 2221344677 999998752112467788887 47799999
Q ss_pred cC------CCCEEEEeccCCCCHHHHHHHHHHHHHH
Q psy6547 228 PI------SNNIIRLSPALNITEQELREGLDIIINT 257 (266)
Q Consensus 228 ~~------~~~~iR~~~~~~~t~~~i~~~~~~l~~~ 257 (266)
|+ +.+++|++.. .+++++++++++|.++
T Consensus 354 pg~~f~~~~~~~iRi~~~--~~~~~l~~~l~rl~~~ 387 (388)
T PRK07366 354 PGSGFGKSGEGYVRFALV--HDPDILEEAVERIAAF 387 (388)
T ss_pred CchHhCcCCCCeEEEEec--CCHHHHHHHHHHHHHh
Confidence 85 2479999954 5799999999999875
No 108
>PRK09276 LL-diaminopimelate aminotransferase; Provisional
Probab=99.91 E-value=2.2e-23 Score=182.40 Aligned_cols=235 Identities=14% Similarity=0.178 Sum_probs=164.9
Q ss_pred cCcccccCCCCCCceeecCC-------CHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEE
Q psy6547 7 PTSYNEFGPHMPGYNIIPYN-------DVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIA 79 (266)
Q Consensus 7 ~~~~~~~~~~~~~v~~~~~~-------d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~ 79 (266)
+.....+.-++.+++.++.+ |++++++.+ .++++++++++++|++|.+ ++.+.+++|.++|++||++||+
T Consensus 128 ~~~~~~~~~~g~~~~~v~~~~~~g~~~d~~~l~~~~--~~~~~~v~l~~p~NPtG~~-~~~~~~~~l~~~~~~~~~~ii~ 204 (385)
T PRK09276 128 PVYKIGTIFAGGEPYFMPLKEENGFLPDLDAIPEDV--AKKAKLMFINYPNNPTGAV-ADLEFFEEVVDFAKKYDIIVCH 204 (385)
T ss_pred cChHHHHHHcCCEEEEEecCCCCCCcCCHHHHHHhc--cccceEEEEeCCCCCCCCC-CCHHHHHHHHHHHHHCCcEEEE
Confidence 33333345567777777642 577887777 3467888888778888987 8999999999999999999999
Q ss_pred eccccCcCCcCcc-cc---ccc-CCCCcCeeeeccccc-CCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHH
Q psy6547 80 DEVQTGLGRTGKL-LA---IHY-EDVRPDIVILGKALS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTA 153 (266)
Q Consensus 80 De~~~~~~~~g~~-~~---~~~-~~~~~d~~~~sK~~~-~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 153 (266)
||+|.++...+.. .. ... .+....+.+|||.++ +| +|+||+++++++++.+.........+.+.+.+.++..+
T Consensus 205 De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G-lRiG~~i~~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~ 283 (385)
T PRK09276 205 DAAYSEIAYDGYKPPSFLEVPGAKDVGIEFHSLSKTYNMTG-WRIGFAVGNADLIAGLGKVKSNVDSGVFQAIQEAGIAA 283 (385)
T ss_pred ecchhheecCCCCCCChhccCCCcCCEEEEecchhhcCCcc-hhheeeeCCHHHHHHHHHHHhhccCCCCHHHHHHHHHH
Confidence 9999776332321 11 111 123345667999997 89 99999999999888776543333444566677777777
Q ss_pred HHHHhh--ccHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHH-HCCceeccC-
Q psy6547 154 LDVILE--ENMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMK-DAGLVTKPI- 229 (266)
Q Consensus 154 l~~~~~--~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~-~~gi~~~~~- 229 (266)
++.... +...++++++++.+.+.|++ .+ +.......|. ++|+.+++ ..+..+++++|+ ++||.+.++
T Consensus 284 l~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~---~~~~~~~~~~---~~~v~~~~--~~~~~~l~~~ll~~~gi~v~~g~ 354 (385)
T PRK09276 284 LNGPQEVVEELRKIYQERRDILVEGLRK-LG---LEVEPPKATF---YVWAPVPK--GYTSAEFATLLLDKAGVVVTPGN 354 (385)
T ss_pred HcCcHHHHHHHHHHHHHHHHHHHHHHHh-CC---CcccCCCcce---EEEEECCC--CCCHHHHHHHHHHhCCEEECCch
Confidence 653211 34566667777778888877 43 2221223455 68888876 557888999987 579999986
Q ss_pred -----CCCEEEEeccCCCCHHHHHHHHHHHHH
Q psy6547 230 -----SNNIIRLSPALNITEQELREGLDIIIN 256 (266)
Q Consensus 230 -----~~~~iR~~~~~~~t~~~i~~~~~~l~~ 256 (266)
+.+++|++.. .+++++.+++++|.+
T Consensus 355 ~f~~~~~~~~Ris~~--~~~~~l~~~l~~l~~ 384 (385)
T PRK09276 355 GFGEYGEGYFRIALT--VPDERIEEAVERIKK 384 (385)
T ss_pred hhCCCCCCeEEEEeC--CCHHHHHHHHHHHhh
Confidence 2479999954 688889888888864
No 109
>TIGR03540 DapC_direct LL-diaminopimelate aminotransferase. This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia, so it seems quite reasonable that these enzymes catalyze the same transformation.
Probab=99.91 E-value=1.9e-23 Score=182.66 Aligned_cols=236 Identities=14% Similarity=0.173 Sum_probs=166.5
Q ss_pred CcCcccccCCCCCCceeecCC-------CHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEE
Q psy6547 6 DPTSYNEFGPHMPGYNIIPYN-------DVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFI 78 (266)
Q Consensus 6 ~~~~~~~~~~~~~~v~~~~~~-------d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li 78 (266)
++.....+.-++.+++.++.+ |++++++.+ .++++++++++++|++|.+ ++.+.+++|+++|++||++||
T Consensus 125 y~~~~~~~~~~G~~v~~v~~~~~~g~~~d~~~l~~~~--~~~~~~v~i~~P~NPtG~~-~~~~~~~~i~~~a~~~~~~ii 201 (383)
T TIGR03540 125 YPVYRIGTLFAGGEPYEMPLKEENGFLPDFDAIPEDI--AKKAKLMFINYPNNPTGAV-APLKFFKELVEFAKEYNIIVC 201 (383)
T ss_pred CcchHHHHHhcCCEEEEEecCcccCCccCHHHHHhhc--cccceEEEEeCCCCCcCcc-CCHHHHHHHHHHHHHcCEEEE
Confidence 333334445667778877753 577888877 3468888888778888877 899999999999999999999
Q ss_pred EeccccCcCCcCc-cccc---cc-CCCCcCeeeeccccc-CCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHHH
Q psy6547 79 ADEVQTGLGRTGK-LLAI---HY-EDVRPDIVILGKALS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMT 152 (266)
Q Consensus 79 ~De~~~~~~~~g~-~~~~---~~-~~~~~d~~~~sK~~~-~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 152 (266)
+||+|.++...+. ...+ .. ......+.+|||.++ +| +|+||+++++++.+.+.........+.+.+.+.++..
T Consensus 202 ~De~y~~l~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~g~~G-lRiG~~i~~~~l~~~~~~~~~~~~~~~~~~~q~~~~~ 280 (383)
T TIGR03540 202 HDNAYSEITFDGYKAPSFLEVDGAKDVGIEFHSLSKTYNMTG-WRIGMAVGNADLIAGLGKVKTNVDSGVFQAIQYAAIA 280 (383)
T ss_pred EecchhhhccCCCCCcCcccCCCcccCEEEEEecccccCCcc-ceeeEEeCCHHHHHHHHHHHHhcccCCChHHHHHHHH
Confidence 9999977643331 1111 11 123345567999997 89 9999999999988877654333344556667777777
Q ss_pred HHHHHhh--ccHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHH-HCCceeccC
Q psy6547 153 ALDVILE--ENMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMK-DAGLVTKPI 229 (266)
Q Consensus 153 ~l~~~~~--~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~-~~gi~~~~~ 229 (266)
+++.... ++..+.++++++.+.+.|++ .+ +.......|. ++|+.+++ +.+..+++.+|+ ++||.+.++
T Consensus 281 ~l~~~~~~~~~~~~~~~~~~~~~~~~L~~-~~---~~~~~~~~~~---~~~~~l~~--~~~~~~~~~~ll~~~gi~v~~g 351 (383)
T TIGR03540 281 ALNGPQDVVKEIRKIYQRRRDLLLEALKK-IG---IDVEKPKATF---YVWVPVPE--GYTSAEFAARLLEETGVVVTPG 351 (383)
T ss_pred HHhCCHHHHHHHHHHHHHHHHHHHHHHHh-CC---CEecCCCcce---EEEEECCC--CCCHHHHHHHHHHHCCEEEecc
Confidence 6653211 23566677777888888877 43 2221223466 78998876 567889999975 689999975
Q ss_pred ------CCCEEEEeccCCCCHHHHHHHHHHHHH
Q psy6547 230 ------SNNIIRLSPALNITEQELREGLDIIIN 256 (266)
Q Consensus 230 ------~~~~iR~~~~~~~t~~~i~~~~~~l~~ 256 (266)
+.+++|++.+ .+++++++++++|.+
T Consensus 352 ~~f~~~~~~~~Ris~~--~~~~~l~~~l~~l~~ 382 (383)
T TIGR03540 352 VGFGEYGEGYIRISLT--VPDERLEEAVARIKK 382 (383)
T ss_pred hhhCccCCCeEEEEec--CCHHHHHHHHHHHhh
Confidence 2478999954 678889888888864
No 110
>PRK07505 hypothetical protein; Provisional
Probab=99.91 E-value=9.2e-23 Score=179.34 Aligned_cols=222 Identities=18% Similarity=0.243 Sum_probs=153.7
Q ss_pred CCCceeecCCCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccc--cCcCCcCcccc
Q psy6547 17 MPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQ--TGLGRTGKLLA 94 (266)
Q Consensus 17 ~~~v~~~~~~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~--~~~~~~g~~~~ 94 (266)
+.+++.+|++|+++++++++.+ ...+++++|+++ +|.+. ++++|.++|++||+++|+||+| ++++++|..+.
T Consensus 158 ~~~v~~~~~~d~~~l~~~~~~~-~~~~vl~~p~~~-~G~~~----~~~~i~~l~~~~~~~li~DEa~~~~~~g~~g~~~~ 231 (402)
T PRK07505 158 ETEVETIDHNDLDALEDICKTN-KTVAYVADGVYS-MGGIA----PVKELLRLQEKYGLFLYIDDAHGLSIYGKNGEGYV 231 (402)
T ss_pred CCeEEEeCCCCHHHHHHHHhcC-CCEEEEEecccc-cCCcC----CHHHHHHHHHHcCCEEEEECcccccCcCCCCCchH
Confidence 3589999999999999998433 456777887765 46554 5899999999999999999999 45777776555
Q ss_pred cccCCC-CcCee----eecccccCCchhhhhhee-cHHhhhccCCCCCCCCCCC--cHHHHHHHHHHHHHHhhccHH---
Q psy6547 95 IHYEDV-RPDIV----ILGKALSGGLYPISAVLA-DDEVMGTLVPGTHGSTYGG--NPLACKLAMTALDVILEENMI--- 163 (266)
Q Consensus 95 ~~~~~~-~~d~~----~~sK~~~~g~~~~g~~~~-~~~~~~~~~~~~~~~~~~~--~~~~~~a~~~~l~~~~~~~~~--- 163 (266)
....+. .+|.+ ++||+++++ .|+++. ++++.+.+....+..++++ ++++++++.++++....+.+.
T Consensus 232 ~~~~~~~~~d~~i~~~s~sK~~~~~---Gg~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~aa~~a~l~~~~~~~~~~~~ 308 (402)
T PRK07505 232 RSELDYRLNERTIIAASLGKAFGAS---GGVIMLGDAEQIELILRYAGPLAFSQSLNVAALGAILASAEIHLSEELDQLQ 308 (402)
T ss_pred HHHcCCCCCCCeEEEEechhhhhcc---CeEEEeCCHHHHHHHHHhCCCceeCCCCCHHHHHHHHHHHHHHhccCcHHHH
Confidence 555565 55543 699999854 366654 6777777765445555544 457888888888866554433
Q ss_pred HHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccC-------CCCEEEE
Q psy6547 164 ENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPI-------SNNIIRL 236 (266)
Q Consensus 164 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~-------~~~~iR~ 236 (266)
++++++.+.+.+.+.. . ..+.+. ++.++.+.+ ..++.+++++|.++||++++. +.+++|+
T Consensus 309 ~~l~~~~~~~~~~~~~--------~-~~g~~~--~i~~~~~~~--~~~~~~~~~~l~~~Gi~v~~~~~p~~~~~~~~lRi 375 (402)
T PRK07505 309 QKLQNNIALFDSLIPT--------E-QSGSFL--PIRLIYIGD--EDTAIKAAKQLLDRGFYTSPVFFPVVAKGRAGLRI 375 (402)
T ss_pred HHHHHHHHHHHHHHHh--------c-CCCCCC--CEEEEEeCC--HHHHHHHHHHHHHCCCeEeeecCCCCCCCCceEEE
Confidence 2232222222211111 1 223333 233444433 235788999999999999864 2368999
Q ss_pred eccCCCCHHHHHHHHHHHHHHHHH
Q psy6547 237 SPALNITEQELREGLDIIINTINT 260 (266)
Q Consensus 237 ~~~~~~t~~~i~~~~~~l~~~~~~ 260 (266)
++++.+|++++++++++|++++++
T Consensus 376 ~~~~~~t~eei~~~~~~l~~~l~~ 399 (402)
T PRK07505 376 MFRASHTNDEIKRLCSLLKEILDE 399 (402)
T ss_pred ecCccCCHHHHHHHHHHHHHHHHh
Confidence 999999999999999999998765
No 111
>PRK09147 succinyldiaminopimelate transaminase; Provisional
Probab=99.91 E-value=3e-23 Score=182.17 Aligned_cols=235 Identities=14% Similarity=0.044 Sum_probs=164.5
Q ss_pred cCcccccCCCCCCceeecC-------CCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEE
Q psy6547 7 PTSYNEFGPHMPGYNIIPY-------NDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIA 79 (266)
Q Consensus 7 ~~~~~~~~~~~~~v~~~~~-------~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~ 79 (266)
+.+...+..++.+++.+|. .|++++++.+. +++++++++.++|++|.+ ++.+.+++|.++|++|+++||+
T Consensus 128 ~~~~~~~~~~g~~~~~vp~~~~~~~~~d~~~l~~~~~--~~~k~i~l~nP~NPTG~~-~s~~~~~~l~~~a~~~~~~ii~ 204 (396)
T PRK09147 128 QIYEGAALLAGAEPYFLNCDPANNFAPDFDAVPAEVW--ARTQLLFVCSPGNPTGAV-LPLDDWKKLFALSDRYGFVIAS 204 (396)
T ss_pred cchHHHHHhcCCEEEEeccCccccCccCHHHHHHHHh--hccEEEEEcCCCCCcCcc-CCHHHHHHHHHHHHHcCeEEEe
Confidence 3333445567888888874 25788887773 367888887778888887 9999999999999999999999
Q ss_pred eccccCcCCcCc--ccc-cc--------cCCCCcCeeeeccccc-CCchhhhhheecHHhhhccCCCCCCCCCCCcHHHH
Q psy6547 80 DEVQTGLGRTGK--LLA-IH--------YEDVRPDIVILGKALS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLAC 147 (266)
Q Consensus 80 De~~~~~~~~g~--~~~-~~--------~~~~~~d~~~~sK~~~-~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (266)
||+|..+...+. ... .. .++....+.+|||.++ +| +|+||+++++++++.+.......+++.+++.+
T Consensus 205 De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~~G-lRiG~~~~~~~l~~~~~~~~~~~~~~~~~~~q 283 (396)
T PRK09147 205 DECYSEIYFDEAAPPLGLLEAAAELGRDDFKRLVVFHSLSKRSNVPG-LRSGFVAGDAALLKKFLLYRTYHGCAMPPAVQ 283 (396)
T ss_pred eccccccccCCCCCCchhhhhccccCccccccEEEEeccccccCCcc-ceeeeecCCHHHHHHHHHHhhhcccCCCHHHH
Confidence 999987633231 111 10 1122344555999886 88 99999999999888776544444566777787
Q ss_pred HHHHHHHHHHh-hccHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHH-HCCce
Q psy6547 148 KLAMTALDVIL-EENMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMK-DAGLV 225 (266)
Q Consensus 148 ~a~~~~l~~~~-~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~-~~gi~ 225 (266)
.++.+++..-. -.+.++.++++++.+.+.|++ . +....+..|. ++|++++. +..+++++|+ ++||.
T Consensus 284 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~-~----~~~~~p~~g~---f~~~~~~~----~~~~~~~~ll~~~gv~ 351 (396)
T PRK09147 284 AASIAAWNDEAHVRENRALYREKFDAVTPILAP-V----LDVQLPDAGF---YLWAKVPG----DDTEFARRLYADYNVT 351 (396)
T ss_pred HHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHH-h----cCCCCCCeeE---EEEEECCC----CHHHHHHHHHHhCCEE
Confidence 77766653110 022445556666666666655 2 2221334677 99999873 4577888886 67999
Q ss_pred eccCC------------CCEEEEeccCCCCHHHHHHHHHHHHHHHH
Q psy6547 226 TKPIS------------NNIIRLSPALNITEQELREGLDIIINTIN 259 (266)
Q Consensus 226 ~~~~~------------~~~iR~~~~~~~t~~~i~~~~~~l~~~~~ 259 (266)
+.|+. .+++|++.. .+++++++++++|.++++
T Consensus 352 v~pg~~f~~~~~~~~~~~~~iRi~~~--~~~~~l~~~l~rl~~~~~ 395 (396)
T PRK09147 352 VLPGSYLAREAHGVNPGAGRVRIALV--APLAECVEAAERIVDFCR 395 (396)
T ss_pred EeCCccccccccCCCCCCCeEEEEec--CCHHHHHHHHHHHHHHhc
Confidence 98752 478999944 578999999999998763
No 112
>PRK09082 methionine aminotransferase; Validated
Probab=99.91 E-value=2.1e-23 Score=182.48 Aligned_cols=236 Identities=14% Similarity=0.166 Sum_probs=168.5
Q ss_pred CcccccCCCCCCceeecCC------CHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEec
Q psy6547 8 TSYNEFGPHMPGYNIIPYN------DVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADE 81 (266)
Q Consensus 8 ~~~~~~~~~~~~v~~~~~~------d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De 81 (266)
.....+...+.+++.++.+ |++++++.+ .++++++++++++|++|.+ ++.+.+++|.++|++||+++|+||
T Consensus 127 ~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~~--~~~~~~v~l~~p~NPtG~~-~~~~~~~~i~~~a~~~~i~li~De 203 (386)
T PRK09082 127 SYAPAIELAGGRAVRVALQPPDFRVDWQRFAAAI--SPRTRLIILNTPHNPSGTV-WSAADMRALWQLIAGTDIYVLSDE 203 (386)
T ss_pred hhHHHHHHcCCEEEEEecCcccccCCHHHHHHhc--CccceEEEEeCCCCCCCcC-CCHHHHHHHHHHHHHCCEEEEEeh
Confidence 3333345567788888763 678999988 3467888888788889987 899999999999999999999999
Q ss_pred cccCcCCcCc-cccc-ccC---CCCcCeeeeccccc-CCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHHHH
Q psy6547 82 VQTGLGRTGK-LLAI-HYE---DVRPDIVILGKALS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALD 155 (266)
Q Consensus 82 ~~~~~~~~g~-~~~~-~~~---~~~~d~~~~sK~~~-~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~ 155 (266)
+|.++...+. ..+. ... +....+.+|||.++ +| +|+||+++++++++.+........++.+.+.+.++...++
T Consensus 204 ~y~~~~~~~~~~~s~~~~~~~~~~~i~~~S~SK~~~~~G-~RiG~iv~~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~ 282 (386)
T PRK09082 204 VYEHIVFDGAGHASVLRHPELRERAFVVSSFGKTYHVTG-WKVGYCVAPAALSAEFRKVHQYNTFTVNTPAQLALADYLR 282 (386)
T ss_pred hhhhhccCCCCCCChhhCcCccCcEEEEeechhhccchh-hhhhhhhCCHHHHHHHHHHHhhhcCCCChHHHHHHHHHHh
Confidence 9976533222 1111 111 22344455999997 89 9999999999998887765555667778888887776664
Q ss_pred HHhh--ccHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHH-HHCCceeccCC--
Q psy6547 156 VILE--ENMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKM-KDAGLVTKPIS-- 230 (266)
Q Consensus 156 ~~~~--~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l-~~~gi~~~~~~-- 230 (266)
.... +.+++.++++++.+.+.|++ .+ +.......|. ++|+.+++..+.+..+++++| .++||.+.|+.
T Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~L~~-~~---~~~~~~~g~~---~~~~~~~~~~~~~~~~~~~~l~~~~~v~v~pg~~f 355 (386)
T PRK09082 283 AEPEHYLELPAFYQAKRDRFRAALAN-SR---FKLLPCEGTY---FQLVDYSAISDLDDVEFCQWLTREHGVAAIPLSVF 355 (386)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHh-CC---CcccCCCeeE---EEEEeccccCCCCHHHHHHHHHHhCCEEEeCcHHh
Confidence 2111 23556667778888888776 33 2221234466 788888742135678899987 57799998752
Q ss_pred ------CCEEEEeccCCCCHHHHHHHHHHHHH
Q psy6547 231 ------NNIIRLSPALNITEQELREGLDIIIN 256 (266)
Q Consensus 231 ------~~~iR~~~~~~~t~~~i~~~~~~l~~ 256 (266)
.+++|++.. .+++++++++++|++
T Consensus 356 ~~~~~~~~~~Ri~~~--~~~~~l~~~~~rl~~ 385 (386)
T PRK09082 356 YADPFPHRLVRLCFA--KQEETLDAAAERLCQ 385 (386)
T ss_pred CCCCCCCCEEEEEec--CCHHHHHHHHHHHhh
Confidence 368999954 589999999999874
No 113
>PRK07179 hypothetical protein; Provisional
Probab=99.91 E-value=3.2e-22 Score=176.18 Aligned_cols=227 Identities=17% Similarity=0.192 Sum_probs=166.8
Q ss_pred CCCCCceeecCCCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccC--cCCcCcc
Q psy6547 15 PHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTG--LGRTGKL 92 (266)
Q Consensus 15 ~~~~~v~~~~~~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~--~~~~g~~ 92 (266)
..+.+++.++++|+++|+++++++ ++++|++++++|++|.+. ++++|.++|++||+++|+||+|+. ++..|.+
T Consensus 157 ~~g~~~~~~~~~d~~~l~~~l~~~-~~~lV~v~~v~n~tG~i~----pl~~I~~l~~~~~~~livDea~~~g~~g~~g~g 231 (407)
T PRK07179 157 AAGAQAHPFRHNDVDHLRRQIERH-GPGIIVVDSVYSTTGTIA----PLADIVDIAEEFGCVLVVDESHSLGTHGPQGAG 231 (407)
T ss_pred HCCCeEEEecCCCHHHHHHHHHhc-CCeEEEECCCCCCCCccc----cHHHHHHHHHHcCCEEEEECcccccCcCCCCCc
Confidence 345567888889999999999542 468899999999999987 689999999999999999999963 2334432
Q ss_pred cccccCCC--CcCeee--ecccccCCchhhhhheecHHhhhccCCCCCC--CCCCCcHHHHHHHHHHHHHHhhc-cHHHH
Q psy6547 93 LAIHYEDV--RPDIVI--LGKALSGGLYPISAVLADDEVMGTLVPGTHG--STYGGNPLACKLAMTALDVILEE-NMIEN 165 (266)
Q Consensus 93 ~~~~~~~~--~~d~~~--~sK~~~~g~~~~g~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~a~~~~l~~~~~~-~~~~~ 165 (266)
+ ...+++ .+|+++ +||++++ ++|++++++++.+.+...... .+.+.++..++++.++++.+... +.+++
T Consensus 232 ~-~~~~~~~~~vdi~~~S~sK~~g~---~~G~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~aa~~aal~~~~~~~~~~~~ 307 (407)
T PRK07179 232 L-VAELGLTSRVHFITASLAKAFAG---RAGIITCPRELAEYVPFVSYPAIFSSTLLPHEIAGLEATLEVIESADDRRAR 307 (407)
T ss_pred h-HHhcCCCCCCCEEEeechHhhhc---cCeEEEeCHHHHHHHHHhCcCeeeCCCCCHHHHHHHHHHHHHHhcCHHHHHH
Confidence 2 233443 246644 7899974 589999998887666422111 12222344555666777777654 47889
Q ss_pred HHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceec----cC---CCCEEEEec
Q psy6547 166 AYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTK----PI---SNNIIRLSP 238 (266)
Q Consensus 166 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~----~~---~~~~iR~~~ 238 (266)
++++++++++.|++ ++.. ..+.+. ++++.++. ..+...+.+.|.++||.+. |. ..+++|+++
T Consensus 308 l~~~~~~l~~~L~~-~g~~-----v~~~~~---i~~l~~~~--~~~~~~~~~~L~~~GI~~~~~~~p~~~~~~~~lRis~ 376 (407)
T PRK07179 308 LHANARFLREGLSE-LGYN-----IRSESQ---IIALETGS--ERNTEVLRDALEERNVFGAVFCAPATPKNRNLIRLSL 376 (407)
T ss_pred HHHHHHHHHHHHHH-cCCC-----CCCCCC---EEEEEeCC--HHHHHHHHHHHHHCCceEeeecCCCCCCCCceEEEEE
Confidence 99999999999988 5422 223455 88888755 3356778899999999743 32 257999999
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHH
Q psy6547 239 ALNITEQELREGLDIIINTINTM 261 (266)
Q Consensus 239 ~~~~t~~~i~~~~~~l~~~~~~~ 261 (266)
+..+|++|+++++++|++++++.
T Consensus 377 ~~~~t~edi~~~~~~l~~~~~~~ 399 (407)
T PRK07179 377 NADLTASDLDRVLEVCREARDEV 399 (407)
T ss_pred CCCCCHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999988764
No 114
>TIGR03537 DapC succinyldiaminopimelate transaminase. Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade.
Probab=99.91 E-value=4.1e-23 Score=178.44 Aligned_cols=237 Identities=13% Similarity=0.091 Sum_probs=166.0
Q ss_pred CCcCcccccCCCCCCceeecCC-------CHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEE
Q psy6547 5 TDPTSYNEFGPHMPGYNIIPYN-------DVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLF 77 (266)
Q Consensus 5 ~~~~~~~~~~~~~~~v~~~~~~-------d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~l 77 (266)
+++........++.+++.++.+ |++++++++. ++++++++++++|++|.+ ++.+.+++|.++|++||+++
T Consensus 96 ~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~--~~~~~i~i~~p~NPtG~~-~~~~~~~~l~~~a~~~~~~i 172 (350)
T TIGR03537 96 GYPVYERGALFAGGEPTAVKLKKEDGFLLRLEKVEKSIL--EETKIVWINYPHNPTGAT-APRSYLKETIAMCREHGIIL 172 (350)
T ss_pred CCcchHHHHHhcCCEEEEcccCcccCCccCHHHHHHhhh--hccEEEEEeCCCCCcCcc-cCHHHHHHHHHHHHHcCcEE
Confidence 3444444556677888887652 6889998883 367888888888888977 89999999999999999999
Q ss_pred EEeccccCcCCcCccccccc--CCCCcCeeeeccccc-CCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHHH
Q psy6547 78 IADEVQTGLGRTGKLLAIHY--EDVRPDIVILGKALS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTAL 154 (266)
Q Consensus 78 i~De~~~~~~~~g~~~~~~~--~~~~~d~~~~sK~~~-~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l 154 (266)
|+||+|..+...+....... .+....+.++||.++ +| +|+||+++++++.+.+.........+.+++.+.++.+++
T Consensus 173 i~De~y~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G-lRiG~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l 251 (350)
T TIGR03537 173 CSDECYTEIYFGEPPHSALEVGIENVLAFHSLSKRSGMTG-YRSGFVAGDEKLISFLRKLRANFGVASPDFVQAAAKAAW 251 (350)
T ss_pred EEeccccccccCCCCCchhhcCcCCEEEEeecccccCCcc-ccceeeecCHHHHHHHHHHHHhhccCCCHHHHHHHHHHh
Confidence 99999976532222211111 122334445999997 88 999999999988887775433344455556666666555
Q ss_pred HHHh-hccHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccC----
Q psy6547 155 DVIL-EENMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPI---- 229 (266)
Q Consensus 155 ~~~~-~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~---- 229 (266)
.... ....+++++++.+.+.+.|++ .+ +....+..|. ++|+.++. ..++.++++.|.++||.+.++
T Consensus 252 ~~~~~~~~~r~~l~~~~~~~~~~l~~-~g---~~~~~~~g~~---~~~~~~~~--~~~~~~l~~~L~~~gv~v~~g~~f~ 322 (350)
T TIGR03537 252 SDDNHVLERRKIFKRKRDLFIEFFNK-VG---LEYLYPDATF---YLWVKVPS--GIDAKDYALRLLENGIVVAPGENFG 322 (350)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHH-CC---CcccCCCeEE---EEEEECCC--CCCHHHHHHHHHHCCEEEcCchhhC
Confidence 3211 123456666777777777766 33 2221223466 78888876 456789999999999999874
Q ss_pred --CCCEEEEeccCCCCHHHHHHHHHHHHH
Q psy6547 230 --SNNIIRLSPALNITEQELREGLDIIIN 256 (266)
Q Consensus 230 --~~~~iR~~~~~~~t~~~i~~~~~~l~~ 256 (266)
..+++|++. ..+++++++++++|.+
T Consensus 323 ~~~~~~~Ri~~--~~~~~~~~~~l~~~~~ 349 (350)
T TIGR03537 323 SGEEGYVRVAL--VPTLEECEEALRLWER 349 (350)
T ss_pred CCCCCEEEEEe--cCCHHHHHHHHHHHhc
Confidence 257899995 3688999999998875
No 115
>PRK07309 aromatic amino acid aminotransferase; Validated
Probab=99.91 E-value=5.7e-23 Score=180.03 Aligned_cols=241 Identities=16% Similarity=0.149 Sum_probs=172.1
Q ss_pred cccCCCCCCceeecC------CCHHHHHHHHhcC-CCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccc
Q psy6547 11 NEFGPHMPGYNIIPY------NDVDALEAKLKSN-PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQ 83 (266)
Q Consensus 11 ~~~~~~~~~v~~~~~------~d~~~l~~~l~~~-~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~ 83 (266)
..+..++.+++.++. .|++++++++++. +++++++++.++|++|.+ ++.+.+++|.++|++||+++|+||+|
T Consensus 130 ~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~i~l~~P~NPtG~~-~s~~~~~~l~~~~~~~~~~ii~D~~y 208 (391)
T PRK07309 130 PIVNLVGAEIVEIDTTENDFVLTPEMLEKAILEQGDKLKAVILNYPANPTGVT-YSREQIKALADVLKKYDIFVISDEVY 208 (391)
T ss_pred HHHHHcCCEEEEEecCCcCCcCCHHHHHHHhhccCCCeEEEEEECCCCCCCcC-cCHHHHHHHHHHHHHcCcEEEEEccc
Confidence 334556777777764 2689999998653 368899888778888877 89999999999999999999999999
Q ss_pred cCcCCcCcc-ccccc--CCCCcCeeeeccccc-CCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHh-
Q psy6547 84 TGLGRTGKL-LAIHY--EDVRPDIVILGKALS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVIL- 158 (266)
Q Consensus 84 ~~~~~~g~~-~~~~~--~~~~~d~~~~sK~~~-~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~- 158 (266)
.++...+.. ..... .+....+.++||.++ +| +|+||+++++++++.+.........+.+.+++.++..+++...
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G-lRvG~~v~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~ 287 (391)
T PRK07309 209 SELTYTGEPHVSIAEYLPDQTILINGLSKSHAMTG-WRIGLIFAPAEFTAQLIKSHQYLVTAATTMAQFAAVEALTNGKD 287 (391)
T ss_pred cceeeCCCCCCCHHHhccCCEEEEecChhhccCcc-ceeEEEEeCHHHHHHHHHHHhhcccCCChHHHHHHHHHHhCChh
Confidence 876433321 12111 122334455999998 99 9999999999998887754344445677788888877775421
Q ss_pred -hccHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHH-HHCCceeccC------C
Q psy6547 159 -EENMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKM-KDAGLVTKPI------S 230 (266)
Q Consensus 159 -~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l-~~~gi~~~~~------~ 230 (266)
.....++++++++.+.+.|++ .+ +....+..|. ++|+.++.....+..++++++ .++||.+.|+ +
T Consensus 288 ~~~~~~~~~~~~~~~~~~~l~~-~~---~~~~~p~gg~---~~~~~l~~~~~~~~~~~~~~l~~~~gv~v~pg~~f~~~~ 360 (391)
T PRK07309 288 DALPMKKEYIKRRDYIIEKMTD-LG---FKIIKPDGAF---YIFAKIPAGYNQDSFKFLQDFARKKAVAFIPGAAFGPYG 360 (391)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-CC---CeecCCCeeE---EEEEECCCCCCCCHHHHHHHHHHhCCEEEeCchhhCCCC
Confidence 123456677777788888776 33 2221233456 778777652123567888775 5789999876 2
Q ss_pred CCEEEEeccCCCCHHHHHHHHHHHHHHHHHHh
Q psy6547 231 NNIIRLSPALNITEQELREGLDIIINTINTMA 262 (266)
Q Consensus 231 ~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~~ 262 (266)
.+++|++.+ .+.+++++++++|.++++++.
T Consensus 361 ~~~iRi~~~--~~~~~l~~~i~~l~~~~~~~~ 390 (391)
T PRK07309 361 EGYVRLSYA--ASMETIKEAMKRLKEYMEEHA 390 (391)
T ss_pred CCEEEEEec--CCHHHHHHHHHHHHHHHHhhc
Confidence 579999955 578999999999999987753
No 116
>PRK08068 transaminase; Reviewed
Probab=99.91 E-value=4.4e-23 Score=180.66 Aligned_cols=233 Identities=13% Similarity=0.154 Sum_probs=163.0
Q ss_pred cccccCCCCCCceeecCC-------CHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEec
Q psy6547 9 SYNEFGPHMPGYNIIPYN-------DVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADE 81 (266)
Q Consensus 9 ~~~~~~~~~~~v~~~~~~-------d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De 81 (266)
....+...+.+++.++.+ |++++++.+. .++++++++.++|++|.+ ++.+.+++|.++|++||++||+||
T Consensus 131 ~~~~~~~~g~~~~~i~~~~~~~~~~d~~~l~~~~~--~~~~~v~l~~P~NPTG~~-~s~~~~~~l~~la~~~~~~ii~De 207 (389)
T PRK08068 131 YLSGVALARAQFETMPLIAENNFLPDYTKIPEEVA--EKAKLMYLNYPNNPTGAV-ATKAFFEETVAFAKKHNIGVVHDF 207 (389)
T ss_pred hHHHHHhcCCEEEEeecccccCCCCCHHHHHHhcc--ccceEEEEECCCCCCCCc-CCHHHHHHHHHHHHHcCeEEEEeh
Confidence 333445677788888753 4678887773 357888877668888887 999999999999999999999999
Q ss_pred cccCcCCcCc-ccc-cccC---CCCcCeeeeccccc-CCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHHHH
Q psy6547 82 VQTGLGRTGK-LLA-IHYE---DVRPDIVILGKALS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALD 155 (266)
Q Consensus 82 ~~~~~~~~g~-~~~-~~~~---~~~~d~~~~sK~~~-~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~ 155 (266)
+|..+...+. ..+ .... +....+.+|||.++ +| +|+||+++++++++.+.........+.+++.+.++..++.
T Consensus 208 ay~~~~~~~~~~~s~~~~~~~~~~~i~~~S~SK~~g~~G-lRiG~~~~~~~l~~~l~~~~~~~~~~~~~~~q~~~~~~l~ 286 (389)
T PRK08068 208 AYGAIGFDGQKPVSFLQTPGAKDVGIELYTLSKTFNMAG-WRVAFAVGNESVIEAINLLQDHLFVSLFGAIQDAAIEALL 286 (389)
T ss_pred hhhhhccCCCCCcChhhCCCccCCEEEEecchhccCCcc-ceeEeEecCHHHHHHHHHHHhhccCCCChHHHHHHHHHHh
Confidence 9977644432 111 1111 22344556999997 99 9999999999988877654333333444455666665553
Q ss_pred HHhh--ccHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHH-CCceeccC---
Q psy6547 156 VILE--ENMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKD-AGLVTKPI--- 229 (266)
Q Consensus 156 ~~~~--~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~-~gi~~~~~--- 229 (266)
.... +.+.+.++++++.+.+.|++ .+. .......|+ ++|+.++. ..++.+++++|++ +||.+.|+
T Consensus 287 ~~~~~~~~~~~~~~~~r~~~~~~L~~-~g~---~~~~~~g~~---~~~v~~~~--~~~~~~~~~~l~~~~gi~v~pg~~f 357 (389)
T PRK08068 287 SDQSCVAELVARYESRRNAFISACRE-IGW---EVDAPKGSF---FAWMPVPK--GYTSEQFADLLLEKAHVAVAPGNGF 357 (389)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHH-CCC---cccCCCeeE---EEEEECCC--CCCHHHHHHHHHHhCCEEEecchHh
Confidence 2111 34567777788888888877 442 221223456 67888876 4578899999986 69999875
Q ss_pred ---CCCEEEEeccCCCCHHHHHHHHHHHHH
Q psy6547 230 ---SNNIIRLSPALNITEQELREGLDIIIN 256 (266)
Q Consensus 230 ---~~~~iR~~~~~~~t~~~i~~~~~~l~~ 256 (266)
+.+++|++.. .+++.+.+++++|.+
T Consensus 358 ~~~~~~~iRi~~~--~~~~~l~~al~~l~~ 385 (389)
T PRK08068 358 GEHGEGYVRVGLL--TDEERLREAVERIGK 385 (389)
T ss_pred CccCCCeEEEEEc--CCHHHHHHHHHHHHH
Confidence 2579999964 577888888888765
No 117
>PRK05942 aspartate aminotransferase; Provisional
Probab=99.91 E-value=6.1e-23 Score=180.07 Aligned_cols=229 Identities=15% Similarity=0.168 Sum_probs=163.9
Q ss_pred cCCCCCCceeecC-------CCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccC
Q psy6547 13 FGPHMPGYNIIPY-------NDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTG 85 (266)
Q Consensus 13 ~~~~~~~v~~~~~-------~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~ 85 (266)
+...+.+++.++. .|++++++.+ .++++++++++++|++|.+ ++.+.+++|.++|+++|++||+||+|..
T Consensus 138 ~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~--~~~~k~i~l~~P~NPtG~~-~s~~~~~~i~~~a~~~~~~iI~De~y~~ 214 (394)
T PRK05942 138 PLIAGAQIYPIILKPENDWLIDLSSIPEEV--AQQAKILYFNYPSNPTTAT-APREFFEEIVAFARKYEIMLVHDLCYAE 214 (394)
T ss_pred HHHcCCEEEEeecCCccCCccCHHHHHHhc--cccceEEEEcCCCCCCCCc-CCHHHHHHHHHHHHHcCeEEEEeccchh
Confidence 3456677777764 2688898888 3478999988778889977 9999999999999999999999999977
Q ss_pred cCCcCcc-cc---ccc-CCCCcCeeeeccccc-CCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHhh
Q psy6547 86 LGRTGKL-LA---IHY-EDVRPDIVILGKALS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILE 159 (266)
Q Consensus 86 ~~~~g~~-~~---~~~-~~~~~d~~~~sK~~~-~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~ 159 (266)
+...+.. .+ +.. .+....+.+|||.++ +| +|+||+++++++.+.+........++.+.+++.++..+++..+.
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~~~~G-lRiG~i~~~~~l~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~~ 293 (394)
T PRK05942 215 LAFDGYQPTSLLEIPGAKDIGVEFHTLSKTYNMAG-WRVGFVVGNRHIIQGLRTLKTNLDYGIFSALQKAAETALQLPDS 293 (394)
T ss_pred hccCCCCCCChhhCCCccccEEEEecchhccCChh-hheeeeecCHHHHHHHHHHHhhcccCCCHHHHHHHHHHHhCcHH
Confidence 6433321 11 111 123345566999997 89 99999999999988887544444566777788888888864322
Q ss_pred --ccHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHH-HHCCceeccC------C
Q psy6547 160 --ENMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKM-KDAGLVTKPI------S 230 (266)
Q Consensus 160 --~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l-~~~gi~~~~~------~ 230 (266)
++..++++++.+.+.+.|++ .+ +.......|. ++|+.++. +.+..+++.++ .++||.+.++ +
T Consensus 294 ~~~~~~~~~~~~~~~~~~~L~~-~~---~~~~~~~~~~---f~~~~~~~--~~~~~~~~~~~l~~~gV~v~~g~~f~~~~ 364 (394)
T PRK05942 294 YLQQVQERYRTRRDFLIQGLGE-LG---WNIPPTKATM---YLWVPCPV--GMGSTDFALNVLQKTGVVVTPGNAFGEGG 364 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-CC---CeecCCCeee---EEEEECCC--CCCHHHHHHHHHHHCCEEEeCChhhCcCC
Confidence 34567777778888888876 43 2221224566 88898876 45667777765 4789999875 2
Q ss_pred CCEEEEeccCCCCHHHHHHHHHHHHH
Q psy6547 231 NNIIRLSPALNITEQELREGLDIIIN 256 (266)
Q Consensus 231 ~~~iR~~~~~~~t~~~i~~~~~~l~~ 256 (266)
.+++|++.. .+.+.+.+++++|.+
T Consensus 365 ~~~iRis~~--~~~~~l~~~l~~l~~ 388 (394)
T PRK05942 365 EGYVRISLI--ADCDRLGEALDRLKQ 388 (394)
T ss_pred CCeEEEEec--CCHHHHHHHHHHHHH
Confidence 579999964 456667777776654
No 118
>PRK06939 2-amino-3-ketobutyrate coenzyme A ligase; Provisional
Probab=99.91 E-value=1.4e-22 Score=177.92 Aligned_cols=237 Identities=18% Similarity=0.244 Sum_probs=169.9
Q ss_pred CcccccCCCCCCceeecCCCHHHHHHHHhc----CCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccc
Q psy6547 8 TSYNEFGPHMPGYNIIPYNDVDALEAKLKS----NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQ 83 (266)
Q Consensus 8 ~~~~~~~~~~~~v~~~~~~d~~~l~~~l~~----~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~ 83 (266)
.....+...+.+++.++++|++++++.+++ ..++++++++++++++|... ++++|.++|++||++||+||+|
T Consensus 138 ~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~v~~~~v~~~~G~~~----~~~~l~~la~~~~~~li~De~~ 213 (397)
T PRK06939 138 SIIDGVRLCKAKRYRYANNDMADLEAQLKEAKEAGARHKLIATDGVFSMDGDIA----PLPEICDLADKYDALVMVDDSH 213 (397)
T ss_pred HHHHHHHhcCCceEEeCCCCHHHHHHHHHhhhccCCCCeEEEEecCcCCCCCcC----CHHHHHHHHHHhCCEEEEECcc
Confidence 333344556677888888999999999854 12678888888898888765 8999999999999999999999
Q ss_pred c-Cc-CCcCcccccccCCC--CcCee--eecccccCCchhhhhheecHHhhhccCCCCCC--CCCCCcHHHHHHHHHHHH
Q psy6547 84 T-GL-GRTGKLLAIHYEDV--RPDIV--ILGKALSGGLYPISAVLADDEVMGTLVPGTHG--STYGGNPLACKLAMTALD 155 (266)
Q Consensus 84 ~-~~-~~~g~~~~~~~~~~--~~d~~--~~sK~~~~g~~~~g~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~a~~~~l~ 155 (266)
+ ++ +..|.. .....++ .++++ ++||+++ | +|+||+++++++++.+...... ...+.++..++++.++++
T Consensus 214 ~~g~~~~~~~~-~~~~~~~~~~~~i~~~S~sK~~~-g-~r~G~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~al~ 290 (397)
T PRK06939 214 AVGFVGENGRG-TVEHFGVMDRVDIITGTLGKALG-G-ASGGYTAGRKEVIDWLRQRSRPYLFSNSLAPAIVAASIKVLE 290 (397)
T ss_pred cccCcCCCCCC-HHHHcCCCCCCcEEEEECHHHhC-c-cCceEEEeCHHHHHHHHHhCccccccCCCCHHHHHHHHHHHH
Confidence 4 32 222321 1122232 34555 6999995 4 5899999999888877542221 122234555666777777
Q ss_pred HHhh-ccHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccC-----
Q psy6547 156 VILE-ENMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPI----- 229 (266)
Q Consensus 156 ~~~~-~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~----- 229 (266)
.+.. ++++++++++++++++.|++ ++... ..+.+. ++++.++. ..+..+|+++|+++||.+.+.
T Consensus 291 ~~~~~~~~~~~~~~~~~~l~~~L~~-~~~~~----~~~~~~---~~~~~~~~--~~~~~~~~~~L~~~gI~v~~~~~~~~ 360 (397)
T PRK06939 291 LLEESDELRDRLWENARYFREGMTA-AGFTL----GPGEHP---IIPVMLGD--AKLAQEFADRLLEEGVYVIGFSFPVV 360 (397)
T ss_pred HHhcCHHHHHHHHHHHHHHHHHHHH-cCCCc----CCCCCC---EEEEEECC--HHHHHHHHHHHHHCCceEeeeCCCCC
Confidence 7654 46788899999999999987 44222 123344 66555544 346788999999999988742
Q ss_pred --CCCEEEEeccCCCCHHHHHHHHHHHHHHHHHH
Q psy6547 230 --SNNIIRLSPALNITEQELREGLDIIINTINTM 261 (266)
Q Consensus 230 --~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~ 261 (266)
+.+++|++++..++++++++++++|+++++++
T Consensus 361 ~~~~~~iRi~~~~~~~~~~i~~~l~~L~~~~~~~ 394 (397)
T PRK06939 361 PKGQARIRTQMSAAHTKEQLDRAIDAFEKVGKEL 394 (397)
T ss_pred CCCCceEEEEECCCCCHHHHHHHHHHHHHHHHHh
Confidence 23689999998899999999999999998765
No 119
>PRK09148 aminotransferase; Validated
Probab=99.90 E-value=6.3e-23 Score=180.47 Aligned_cols=247 Identities=16% Similarity=0.178 Sum_probs=175.4
Q ss_pred CCcCcccccCCCCCCceeecCC----CHHHHHHHHhcC-CCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEE
Q psy6547 5 TDPTSYNEFGPHMPGYNIIPYN----DVDALEAKLKSN-PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIA 79 (266)
Q Consensus 5 ~~~~~~~~~~~~~~~v~~~~~~----d~~~l~~~l~~~-~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~ 79 (266)
+++.+...+...+.+++.++.. .++++++.+++. +++++++++.++|++|.+ ++.+.+++|.++|++||++||+
T Consensus 125 ~y~~~~~~~~~~g~~v~~v~~~~~~~~~~~l~~~~~~~~~~~~~v~l~~P~NPtG~~-~s~~~l~~l~~~a~~~~~~ii~ 203 (405)
T PRK09148 125 SYPIHAFGFIMAGGVIRSVPAEPDEEFFPALERAVRHSIPKPIALIVNYPSNPTAYV-ADLDFYKDVVAFAKKHDIIILS 203 (405)
T ss_pred CCcccHHHHHhcCCEEEEEeCCCCCCCccCHHHHHhhccccceEEEEeCCCCCCCcC-CCHHHHHHHHHHHHHcCeEEEE
Confidence 3444444556667788888743 355677776542 467888888778889977 8999999999999999999999
Q ss_pred eccccCcCCcCccc-ccccC----CCCcCeeeeccccc-CCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHH
Q psy6547 80 DEVQTGLGRTGKLL-AIHYE----DVRPDIVILGKALS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTA 153 (266)
Q Consensus 80 De~~~~~~~~g~~~-~~~~~----~~~~d~~~~sK~~~-~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 153 (266)
||+|.+|...+..+ ..... +....+.+|||.++ +| +|+||+++++++++.+.......+++.+.+++.++..+
T Consensus 204 De~Y~~~~~~~~~~~s~~~~~~~~~~~i~~~SfSK~~~~pG-lR~G~~v~~~~~i~~l~~~~~~~~~~~~~~~q~~~~~~ 282 (405)
T PRK09148 204 DLAYSEIYFDGNPPPSVLQVPGAKDVTVEFTSMSKTFSMAG-WRMGFAVGNERLIAALTRVKSYLDYGAFTPIQVAATAA 282 (405)
T ss_pred eccchhhhcCCCCCCChhhCCCccCcEEEEeccccccCCcc-hheeeeeCCHHHHHHHHHHHHHhccCCChHHHHHHHHH
Confidence 99998763323211 11111 22234556999999 99 99999999999988887554455666778888888777
Q ss_pred HHHHhh--ccHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCc-cchHHHHHHHHH-HCCceeccC
Q psy6547 154 LDVILE--ENMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSA-ILEVYDVCIKMK-DAGLVTKPI 229 (266)
Q Consensus 154 l~~~~~--~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~l~-~~gi~~~~~ 229 (266)
|+.... +.+.+.++++++.+.+.|++ .+ +....+..|+ |+|+.++... ..+..+++++|+ ++||.+.|+
T Consensus 283 L~~~~~~~~~~~~~~~~~r~~l~~~L~~-~~---~~~~~p~~g~---f~~~~l~~~~~~~~~~~~~~~ll~~~gV~v~pg 355 (405)
T PRK09148 283 LNGPQDCIAEMRELYKKRRDVLVESFGR-AG---WDIPPPAASM---FAWAPIPEAFRHLGSLEFSKLLVEKADVAVAPG 355 (405)
T ss_pred HhCcHHHHHHHHHHHHHHHHHHHHHHHH-cC---CccCCCCeeE---EEEEECCCccCCCCHHHHHHHHHHhCCEEEeCc
Confidence 753211 23556677777777777776 43 2221234577 8999887521 124578888876 789999985
Q ss_pred ------CCCEEEEeccCCCCHHHHHHHHHHHHHHHHHHh
Q psy6547 230 ------SNNIIRLSPALNITEQELREGLDIIINTINTMA 262 (266)
Q Consensus 230 ------~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~~ 262 (266)
+.+++|++.. .+.+++++++++|.++++++.
T Consensus 356 ~~f~~~~~~~~Ri~~~--~~~~~l~~al~~l~~~l~~~~ 392 (405)
T PRK09148 356 VGFGEHGDGYVRIALV--ENEQRIRQAARNIKRFLSSAD 392 (405)
T ss_pred hhhCCCCCCeEEEEec--CCHHHHHHHHHHHHHHHHHHH
Confidence 2479999964 689999999999999987753
No 120
>PRK06425 histidinol-phosphate aminotransferase; Validated
Probab=99.90 E-value=7.1e-23 Score=175.62 Aligned_cols=231 Identities=12% Similarity=0.074 Sum_probs=158.1
Q ss_pred cCcccccCCCCCCceeecCCCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCc
Q psy6547 7 PTSYNEFGPHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGL 86 (266)
Q Consensus 7 ~~~~~~~~~~~~~v~~~~~~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~ 86 (266)
+.....+...+.+++.+|.++.+...+.+++. ++++++++.++|++|.+ ++.+.+++|.++|+++|++||+||+|.+|
T Consensus 90 ~~y~~~~~~~G~~v~~vp~~~~~~~~~~l~~~-~~k~v~l~nP~NPTG~~-~s~~~~~~l~~~a~~~~~~iI~DE~Y~~~ 167 (332)
T PRK06425 90 NEYKGYAFTHGIRISALPFNLINNNPEILNNY-NFDLIFIVSPDNPLGNL-ISRDSLLTISEICRKKGALLFIDEAFIDF 167 (332)
T ss_pred HHHHHHHHHcCCeEEEEeCCcccCcHHHHhhc-CCCEEEEeCCCCCcCCc-cCHHHHHHHHHHHHHcCCEEEEecchhcc
Confidence 33344566778888888864211113344332 57888877788889987 89999999999999999999999999887
Q ss_pred CCcCccccc---ccCCCCcCeeeeccccc-CCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHh-hcc
Q psy6547 87 GRTGKLLAI---HYEDVRPDIVILGKALS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVIL-EEN 161 (266)
Q Consensus 87 ~~~g~~~~~---~~~~~~~d~~~~sK~~~-~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~-~~~ 161 (266)
...+..... ...+....+-+|||.++ +| +|+||+++++++++.+... ...++.+.+++.+.. ....-. .+.
T Consensus 168 ~~~~~~~~~~~~~~~~~vi~~~SfSK~~~l~G-lRiGy~v~~~~li~~l~~~--~~~~~~~~~~~~~l~-~~~~~~~~~~ 243 (332)
T PRK06425 168 VPNRAEEDVLLNRSYGNVIIGRSLTKILGIPS-LRIGYIATDDYNMKISRKI--TEPWSVCDPAIDFIR-SIDLDYVAKH 243 (332)
T ss_pred ccccchhHHHHhccCCCEEEEeecHHhcCCch-hhheeeecCHHHHHHHHHc--CCCCccCHHHHHHHH-HhhhHHHHHH
Confidence 433321111 11223344455999999 99 9999999999998887743 333444444433222 111100 124
Q ss_pred HHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccCC------CCEEE
Q psy6547 162 MIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPIS------NNIIR 235 (266)
Q Consensus 162 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~------~~~iR 235 (266)
..+.++++++.+.+.|++ ++.... ..+.|+ |+|+.++ ++.+++++|.++||.++++. .+++|
T Consensus 244 ~~~~~~~~r~~l~~~L~~-~g~~~~---~~~~g~---f~~~~~~-----~~~~~~~~l~~~gi~v~~~~~f~~~~~~~iR 311 (332)
T PRK06425 244 SLDIMENERSYLINNLEA-MGFRAA---GDPSAN---FITFMIP-----DAHDFYSYLLKNGILVRLLDDYECLGEQYIR 311 (332)
T ss_pred HHHHHHHHHHHHHHHHHH-CCCEEC---CCCCce---EEEEEcC-----CHHHHHHHHHHCCeEEEECCCCCCCCCCEEE
Confidence 567777888888888887 432111 124577 8999875 36789999999999998752 36999
Q ss_pred EeccCCCCHHHHHHHHHHHHHHH
Q psy6547 236 LSPALNITEQELREGLDIIINTI 258 (266)
Q Consensus 236 ~~~~~~~t~~~i~~~~~~l~~~~ 258 (266)
++ ..++++++++++.|++++
T Consensus 312 is---~~~~~~~~~l~~al~~~~ 331 (332)
T PRK06425 312 IA---IRRRSFNIKLVNALRNFL 331 (332)
T ss_pred EE---eCCHHHHHHHHHHHHHHh
Confidence 99 447899999999998765
No 121
>PRK06290 aspartate aminotransferase; Provisional
Probab=99.90 E-value=3.8e-23 Score=181.78 Aligned_cols=241 Identities=16% Similarity=0.183 Sum_probs=170.1
Q ss_pred cccCCCCCCceeecCC-------CHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccc
Q psy6547 11 NEFGPHMPGYNIIPYN-------DVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQ 83 (266)
Q Consensus 11 ~~~~~~~~~v~~~~~~-------d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~ 83 (266)
..+..++.+++.++.+ |++++++.+. +++++++++.++|++|.+ ++.+.+++|.++|++||++||+||+|
T Consensus 145 ~~~~~~g~~v~~v~~~~~~~~~~d~~~l~~~~~--~~~k~i~l~nP~NPTG~v-~s~e~l~~l~~la~~~~~~iI~DEaY 221 (410)
T PRK06290 145 THTKYYGGEVYNLPLLEENNFLPDLDSIPKDIK--EKAKLLYLNYPNNPTGAV-ATKEFYEEVVDFAKENNIIVVQDAAY 221 (410)
T ss_pred HHHHHcCCEEEEEecCCCcCCcCCHHHHHHhhc--ccceEEEEECCCCCCCcC-CCHHHHHHHHHHHHHcCeEEEEecch
Confidence 3445567788887753 6788888873 367888888678888987 89999999999999999999999999
Q ss_pred cCcCCcCccccc-cc---CCCCcCeeeeccccc-CCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHh
Q psy6547 84 TGLGRTGKLLAI-HY---EDVRPDIVILGKALS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVIL 158 (266)
Q Consensus 84 ~~~~~~g~~~~~-~~---~~~~~d~~~~sK~~~-~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~ 158 (266)
.++...+...++ .. .+....+.+|||.++ +| +|+||+++++++++.+.........+.+.+++.++..+++..+
T Consensus 222 ~~~~~~~~~~s~~~~~~~~~~~I~i~SfSK~~g~~G-lRiG~ii~~~~l~~~l~~~~~~~~~~~~~~~q~aa~~~l~~~~ 300 (410)
T PRK06290 222 AALTFDGKPLSFLSVPGAKEVGVEIHSLSKAYNMTG-WRLAFVVGNELIVKAFATVKDNNDSGQFIAIQKAGIYALDHPE 300 (410)
T ss_pred hhceeCCCCcChhcCCCccccEEEEeechhhcCCch-hheEeEEeCHHHHHHHHHHHhccccCCcHHHHHHHHHHhhCcH
Confidence 876332321111 11 123345566999997 89 9999999999998887654444455556677777777775421
Q ss_pred -hccHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCc-----cchHHHHHHHHHHCCc-eeccCC-
Q psy6547 159 -EENMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSA-----ILEVYDVCIKMKDAGL-VTKPIS- 230 (266)
Q Consensus 159 -~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-----~~~~~~~~~~l~~~gi-~~~~~~- 230 (266)
.+...++++++++.+.+.|++ .+ +.......|. ++|+.++... ..++.+++++|+++|+ .+.|+.
T Consensus 301 ~~~~~~~~~~~~~~~l~~~L~~-~g---~~~~~p~g~f---~l~v~lp~~~~~~~~~~~~~~~~~~Ll~~~~v~~~p~~~ 373 (410)
T PRK06290 301 ITEKIREKYSRRLDKLVKILNE-VG---FKAEMPGGTF---YLYVKAPKGTKSGIKFENAEEFSQYLIKEKLISTVPWDD 373 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh-CC---CeecCCCeee---EEEEECCCccccCCCCCCHHHHHHHHHHhCCEEEECCcc
Confidence 134667777888888888877 43 2221223456 7788887521 1267889999998865 444542
Q ss_pred -CCEEEEecc-CCCCHHHHHHHHHHHHHHHHHHh
Q psy6547 231 -NNIIRLSPA-LNITEQELREGLDIIINTINTMA 262 (266)
Q Consensus 231 -~~~iR~~~~-~~~t~~~i~~~~~~l~~~~~~~~ 262 (266)
++++|++.. ...++++.+++++.|.+.+.++.
T Consensus 374 ~~~~lRi~~~~~~~~~~~~~~~~~~l~~~~~~~~ 407 (410)
T PRK06290 374 AGHFLRFSVTFEAKDEEEEDRILEEIKRRLSDVE 407 (410)
T ss_pred ccCeEEEEEEcccccccchhHHHHHHHHHHhhcc
Confidence 368999953 23588899999999999987753
No 122
>PRK02610 histidinol-phosphate aminotransferase; Provisional
Probab=99.90 E-value=7.4e-23 Score=178.31 Aligned_cols=233 Identities=15% Similarity=0.096 Sum_probs=162.4
Q ss_pred ccccCCCCCCceeecC------CCHHHHHHHHhc--CCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEec
Q psy6547 10 YNEFGPHMPGYNIIPY------NDVDALEAKLKS--NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADE 81 (266)
Q Consensus 10 ~~~~~~~~~~v~~~~~------~d~~~l~~~l~~--~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De 81 (266)
...+...+.+++.++. .|+++|++.+++ ..+++++++++++|++|.+ ++.+.++++.++| ++++||+||
T Consensus 130 ~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~k~i~l~~P~NPTG~~-~s~~~l~~l~~~~--~~~~iI~De 206 (374)
T PRK02610 130 GILAQTLGIPVVRVGRDPETFEIDLAAAQSAIEQTQNPPVRVVFVVHPNSPTGNP-LTAAELEWLRSLP--EDILVVIDE 206 (374)
T ss_pred HHHHHHcCCEEEEecCCcccCCCCHHHHHHHHHhhcCCCceEEEEeCCCCCCCCC-CCHHHHHHHHhcc--CCcEEEEec
Confidence 3344556777777763 268999998854 1468999887788989987 8999999999887 499999999
Q ss_pred cccCcCCcCcccccccCCCCcCeeeeccccc-CCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHhh-
Q psy6547 82 VQTGLGRTGKLLAIHYEDVRPDIVILGKALS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILE- 159 (266)
Q Consensus 82 ~~~~~~~~g~~~~~~~~~~~~d~~~~sK~~~-~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~- 159 (266)
+|.+|.................+.+|||.++ +| +|+||+++++++.+.+.... ..++.+.+.+.++..+++..+.
T Consensus 207 ~Y~~~~~~~~~~~~~~~~~~ivi~SfSK~~g~~G-lRiG~~v~~~~l~~~l~~~~--~~~~~~~~~q~a~~~~l~~~~~~ 283 (374)
T PRK02610 207 AYFEFSQTTLVGELAQHPNWVILRTFSKAFRLAA-HRVGYAIGHPELIAVLEKVR--LPYNLPSFSQLAAQLALEHRQEL 283 (374)
T ss_pred cccccCccchHHHHhcCCCEEEEEecchhccCcc-cceeeeecCHHHHHHHHHhc--CCCCCCHHHHHHHHHHhcCHHHH
Confidence 9987742211111111112233556999996 99 99999999999888876533 3455678888888777754321
Q ss_pred ccHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccCCCCEEEEecc
Q psy6547 160 ENMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPISNNIIRLSPA 239 (266)
Q Consensus 160 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~iR~~~~ 239 (266)
.+..++..+.++.+.+.|+. +. .+.. .+..|+ |+|+.++. +.+..++++.|.++||.+.+. .+++|++..
T Consensus 284 ~~~~~~~~~~r~~l~~~L~~-~~--~~~~-~p~~g~---f~~~~l~~--~~~~~~~~~~l~~~gi~v~~~-~~~lRls~~ 353 (374)
T PRK02610 284 LAAIPEILQERDRLYQALQE-LP--QLRV-WPSAAN---FLYLRLSQ--DAALAALHQALKAQGTLVRHT-GGGLRITIG 353 (374)
T ss_pred HHHHHHHHHHHHHHHHHHHh-CC--CcEe-CCCcce---EEEEeCCC--CCCHHHHHHHHHHCCEEEEeC-CCeEEEeCC
Confidence 11122223334555566655 32 2222 244577 99998876 457889999999999999875 679999943
Q ss_pred CCCCHHHHHHHHHHHHHHHHHH
Q psy6547 240 LNITEQELREGLDIIINTINTM 261 (266)
Q Consensus 240 ~~~t~~~i~~~~~~l~~~~~~~ 261 (266)
+.+++++++++|.++++++
T Consensus 354 ---~~~~~~~~l~~l~~~l~~~ 372 (374)
T PRK02610 354 ---TPEENQRTLERLQAALTQL 372 (374)
T ss_pred ---CHHHHHHHHHHHHHHHhhc
Confidence 4677899999999988754
No 123
>PRK08912 hypothetical protein; Provisional
Probab=99.90 E-value=9.3e-23 Score=178.51 Aligned_cols=242 Identities=17% Similarity=0.176 Sum_probs=170.8
Q ss_pred CcCcccccCCCCCCceeecCC------CHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEE
Q psy6547 6 DPTSYNEFGPHMPGYNIIPYN------DVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIA 79 (266)
Q Consensus 6 ~~~~~~~~~~~~~~v~~~~~~------d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~ 79 (266)
++.....+..++.+++.++.+ |++++++.+ .+++++++++.++|++|.+ ++.+.+++|.++|++||+++|+
T Consensus 121 y~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~v~l~~p~NPtG~~-~s~~~~~~i~~~~~~~~~~ii~ 197 (387)
T PRK08912 121 YDAYLPLIRRAGGVPRLVRLEPPHWRLPRAALAAAF--SPRTKAVLLNNPLNPAGKV-FPREELALLAEFCQRHDAVAIC 197 (387)
T ss_pred chhhHHHHHHcCCEEEEEecCcccCcCCHHHHHHHh--CccceEEEEeCCCCCcCcc-cCHHHHHHHHHHHHHCCeEEEE
Confidence 344444456667777777642 578999888 3467888888778888877 8999999999999999999999
Q ss_pred eccccCcCCcCccc-c-ccc---CCCCcCeeeeccccc-CCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHH
Q psy6547 80 DEVQTGLGRTGKLL-A-IHY---EDVRPDIVILGKALS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTA 153 (266)
Q Consensus 80 De~~~~~~~~g~~~-~-~~~---~~~~~d~~~~sK~~~-~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 153 (266)
||+|.++...+..+ . ... .+....+.++||.++ +| +|+||+++++++++.+........++.++..+.++..+
T Consensus 198 De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G-lRiG~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~ 276 (387)
T PRK08912 198 DEVWEHVVFDGRRHIPLMTLPGMRERTVKIGSAGKIFSLTG-WKVGFVCAAPPLLRVLAKAHQFLTFTTPPNLQAAVAYG 276 (387)
T ss_pred hhhhhhcccCCCCCcChhhCCCccCceEEEeechhhccCcC-ceeEEEecCHHHHHHHHHHHhhccccCChHHHHHHHHH
Confidence 99997653333211 1 111 123344555999999 99 99999999999888876544444566666677777666
Q ss_pred HHHHhh--ccHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCc-cchHHHHHHHHH-HCCceeccC
Q psy6547 154 LDVILE--ENMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSA-ILEVYDVCIKMK-DAGLVTKPI 229 (266)
Q Consensus 154 l~~~~~--~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~l~-~~gi~~~~~ 229 (266)
+..... +++.++++++++.+.+.|++ .+ +.......|. ++|+.++... ..+..+++++|+ ++||.+.|+
T Consensus 277 l~~~~~~~~~~~~~~~~~~~~l~~~L~~-~g---~~~~~~~g~~---~l~~~l~~~~~~~~~~~~~~~l~~~~gV~v~pg 349 (387)
T PRK08912 277 LGKPDDYFEGMRADLARSRDRLAAGLRR-IG---FPVLPSQGTY---FLTVDLAPLGLAEDDVAFCRRLVEEAGVAAIPV 349 (387)
T ss_pred HhCCHHHHHHHHHHHHHHHHHHHHHHHh-CC---CcccCCCcce---EEEecccccCCCCCHHHHHHHHHhcCCEEEecc
Confidence 642111 34667778888888888887 43 2221223456 7888886411 236788999986 579999875
Q ss_pred --------CCCEEEEeccCCCCHHHHHHHHHHHHHHHHH
Q psy6547 230 --------SNNIIRLSPALNITEQELREGLDIIINTINT 260 (266)
Q Consensus 230 --------~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~ 260 (266)
..+++|++.. .+++++++++++|.+++++
T Consensus 350 ~~f~~~~~~~~~iRl~~~--~~~~~l~~~l~rl~~~l~~ 386 (387)
T PRK08912 350 SAFYEEDPVTSVVRFCFA--KRDATLDEAVERLAAARRR 386 (387)
T ss_pred hhhCCCCCCCCEEEEEEe--CCHHHHHHHHHHHHHHHhc
Confidence 1479999955 5789999999999988764
No 124
>PRK08175 aminotransferase; Validated
Probab=99.90 E-value=1.6e-22 Score=177.54 Aligned_cols=240 Identities=15% Similarity=0.188 Sum_probs=171.4
Q ss_pred ccccCCCCCCceeecCC----CHHHHHHHHhcC-CCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEecccc
Q psy6547 10 YNEFGPHMPGYNIIPYN----DVDALEAKLKSN-PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQT 84 (266)
Q Consensus 10 ~~~~~~~~~~v~~~~~~----d~~~l~~~l~~~-~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~ 84 (266)
...+.-.+.+++.++.+ +.+++++++++. +++++++++.++|++|.+ ++.+.+++|.++|++||+++|+||+|.
T Consensus 129 ~~~~~~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~~~v~i~~p~NPtG~~-~~~~~~~~i~~~a~~~~i~ii~De~y~ 207 (395)
T PRK08175 129 IYGAVIAGAQVRSVPLVEGVDFFNELERAIRESYPKPKMMILGFPSNPTAQC-VELEFFEKVVALAKRYDVLVVHDLAYA 207 (395)
T ss_pred HHHHHHcCCeEEEEecccCCCcHHHHHHHHhhccCCceEEEEeCCCCCCCCC-CCHHHHHHHHHHHHHcCcEEEEecchH
Confidence 34445567777877754 478888888643 468888888778888877 999999999999999999999999997
Q ss_pred CcCCcCcc-ccc-cc---CCCCcCeeeeccccc-CCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHh
Q psy6547 85 GLGRTGKL-LAI-HY---EDVRPDIVILGKALS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVIL 158 (266)
Q Consensus 85 ~~~~~g~~-~~~-~~---~~~~~d~~~~sK~~~-~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~ 158 (266)
++...+.. ... .. .+....+.++||.++ +| +|+||+++++++++.+........++.+.+.+.++..+++...
T Consensus 208 ~l~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~pG-lRiG~~~~~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~ 286 (395)
T PRK08175 208 DIVYDGWKAPSIMQVPGAKDVAVEFFTLSKSYNMAG-WRIGFMVGNPELVSALARIKSYHDYGTFTPLQVAAIAALEGDQ 286 (395)
T ss_pred hhccCCCCCcchhcCCCcccCEEEEeeccccccCcc-hhheeeeCCHHHHHHHHHHHhhcccCCCcHHHHHHHHHHhCcH
Confidence 76333321 111 11 122234456999997 89 9999999999998877654444455666667777777775321
Q ss_pred h--ccHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCc-cchHHHHHHHHH-HCCceeccC-----
Q psy6547 159 E--ENMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSA-ILEVYDVCIKMK-DAGLVTKPI----- 229 (266)
Q Consensus 159 ~--~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~l~-~~gi~~~~~----- 229 (266)
. +.+.+.++++.+++.+.|++ ++. ....+..|+ ++|+.+++.. ..++.+++.+|+ ++||.+.|+
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~L~~-~~~---~~~~p~~g~---~i~i~l~~~~~~~~~~~~~~~l~~~~gv~v~p~~~f~~ 359 (395)
T PRK08175 287 QCVRDIAEQYKRRRDVLVKGLHE-AGW---MVEMPKASM---YVWAKIPEPYAAMGSLEFAKKLLNEAKVCVSPGIGFGD 359 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-cCC---cccCCCEEE---EEEEECCcccCCCCHHHHHHHHHHhCCEEEeCchhhCc
Confidence 1 23566667777788888877 432 221233577 9999998621 124688988876 679999886
Q ss_pred -CCCEEEEeccCCCCHHHHHHHHHHHHHHHHH
Q psy6547 230 -SNNIIRLSPALNITEQELREGLDIIINTINT 260 (266)
Q Consensus 230 -~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~ 260 (266)
+.+++|++.. .+++.+.+++++|.+++.+
T Consensus 360 ~~~~~lRis~~--~~~~~~~~al~~l~~~l~~ 389 (395)
T PRK08175 360 YGDTHVRFALI--ENRDRIRQAIRGIKAMFRA 389 (395)
T ss_pred CCCCeEEEEeC--CCHHHHHHHHHHHHHHHHh
Confidence 2468999954 6899999999999998865
No 125
>PRK05958 8-amino-7-oxononanoate synthase; Reviewed
Probab=99.90 E-value=2.8e-22 Score=175.24 Aligned_cols=227 Identities=23% Similarity=0.258 Sum_probs=168.2
Q ss_pred CCCCCCceeecCCCHHHHHHHHhcC-CCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccC--cCCcC
Q psy6547 14 GPHMPGYNIIPYNDVDALEAKLKSN-PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTG--LGRTG 90 (266)
Q Consensus 14 ~~~~~~v~~~~~~d~~~l~~~l~~~-~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~--~~~~g 90 (266)
...+.+++.++.+|++++++.++.. +++++++++++++++|... ++++|+++|++||+++|+||+|+. ++..|
T Consensus 141 ~~~g~~~~~~~~~d~~~l~~~i~~~~~~~~lvi~~~~~~~~G~~~----~l~~i~~ia~~~~~~li~De~~~~g~~~~~g 216 (385)
T PRK05958 141 RLSRARVRRYPHNDVDALEALLAKWRAGRALIVTESVFSMDGDLA----PLAELVALARRHGAWLLVDEAHGTGVLGPQG 216 (385)
T ss_pred HhcCCceEEeCCCCHHHHHHHHHhccCCCeEEEEEecccCCCCcC----CHHHHHHHHHHhCCEEEEECcccccccCCCC
Confidence 3456678888889999999999653 2467888888988888775 799999999999999999999943 33333
Q ss_pred ccccc-ccCCCCcC---eeeecccccCCchhhhhheecHHhhhccCCC--CCCCCCCCcHHHHHHHHHHHHHHhhc-cHH
Q psy6547 91 KLLAI-HYEDVRPD---IVILGKALSGGLYPISAVLADDEVMGTLVPG--THGSTYGGNPLACKLAMTALDVILEE-NMI 163 (266)
Q Consensus 91 ~~~~~-~~~~~~~d---~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~a~~~~l~~~~~~-~~~ 163 (266)
..+.. ......++ +.++||++++ +.||+++++++.+.+... .+..+.+.+++.++++.++++.++.. ++.
T Consensus 217 ~~~~~~~~~~~~~~~i~~~s~sK~~~~---~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~aal~~~~~~~~~~ 293 (385)
T PRK05958 217 RGLAAEAGLAGEPDVILVGTLGKALGS---SGAAVLGSETLIDYLINRARPFIFTTALPPAQAAAARAALRILRREPERR 293 (385)
T ss_pred CchHHhhCCCCCCceEEEEechhhccc---CCcEEEcCHHHHHHHHHhCccceecCCCCHHHHHHHHHHHHHHhcCHHHH
Confidence 32211 11122344 5669999973 347888888887765422 22333456777777888888877663 678
Q ss_pred HHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccC-------CCCEEEE
Q psy6547 164 ENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPI-------SNNIIRL 236 (266)
Q Consensus 164 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~-------~~~~iR~ 236 (266)
+++.++++++.+.|++ ++. .. ..+.|. ++++.+++ ..+..+++++|+++||.+.+. +.+++|+
T Consensus 294 ~~~~~~~~~l~~~L~~-~~~---~~-~~~~~~---~~~~~~~~--~~~~~~~~~~l~~~gI~v~~~~~~~~~~~~~~lRi 363 (385)
T PRK05958 294 ERLAALIARLRAGLRA-LGF---QL-MDSQSA---IQPLIVGD--NERALALAAALQEQGFWVGAIRPPTVPAGTSRLRI 363 (385)
T ss_pred HHHHHHHHHHHHHHHH-cCC---Cc-CCCCCC---EEEEEeCC--HHHHHHHHHHHHHCCceEecccCCCCCCCCceEEE
Confidence 8999999999999987 442 22 234566 88888765 446788999999999999752 2468999
Q ss_pred eccCCCCHHHHHHHHHHHHHH
Q psy6547 237 SPALNITEQELREGLDIIINT 257 (266)
Q Consensus 237 ~~~~~~t~~~i~~~~~~l~~~ 257 (266)
+++..++++++++++++|+++
T Consensus 364 s~~~~~~~~~i~~~l~~l~~~ 384 (385)
T PRK05958 364 TLTAAHTEADIDRLLEALAEA 384 (385)
T ss_pred EecCCCCHHHHHHHHHHHHhc
Confidence 999999999999999999875
No 126
>TIGR01822 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A ligase. This model represents a narrowly defined clade of animal and bacterial (almost exclusively Proteobacterial) 2-amino-3-ketobutyrate--CoA ligase. This enzyme can act in threonine catabolism. The closest homolog from Bacillus subtilis, and sequences like it, may be functionally equivalent but were not included in the model because of difficulty in finding reports of function.
Probab=99.90 E-value=3.4e-22 Score=175.31 Aligned_cols=229 Identities=20% Similarity=0.266 Sum_probs=164.5
Q ss_pred CCCCceeecCCCHHHHHHHHhcC--C--CEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEecccc-Cc-CCc
Q psy6547 16 HMPGYNIIPYNDVDALEAKLKSN--P--NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQT-GL-GRT 89 (266)
Q Consensus 16 ~~~~v~~~~~~d~~~l~~~l~~~--~--~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~-~~-~~~ 89 (266)
.+.+.+.++++|++++++.+++. + ++++|++++++|++|.+. ++++|+++|++||+++|+||+|. ++ +..
T Consensus 142 ~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~v~~~~v~~~tG~~~----~l~~i~~la~~~~~~li~De~~~~g~~~~~ 217 (393)
T TIGR01822 142 CKAKRYRYANNDMADLEAQLKEARAAGARHRLIATDGVFSMDGVIA----PLDEICDLADKYDALVMVDECHATGFLGPT 217 (393)
T ss_pred cCCceEEeCCCCHHHHHHHHHhhhhcCCCceEEEEeCCccCCCCcC----CHHHHHHHHHHcCCEEEEECCccccCcCCC
Confidence 34455667789999999999641 2 678999999999999886 79999999999999999999993 32 222
Q ss_pred CcccccccCCC--CcCee--eecccccCCchhhhhheecHHhhhccCCCCCCC--CCCCcHHHHHHHHHHHHHHhh-ccH
Q psy6547 90 GKLLAIHYEDV--RPDIV--ILGKALSGGLYPISAVLADDEVMGTLVPGTHGS--TYGGNPLACKLAMTALDVILE-ENM 162 (266)
Q Consensus 90 g~~~~~~~~~~--~~d~~--~~sK~~~~g~~~~g~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~a~~~~l~~~~~-~~~ 162 (266)
|.. .....++ .+|++ ++||+++ | +++||+++++++.+.+....... +.+.++..++++.++++.++. ++.
T Consensus 218 ~~~-~~~~~~~~~~~di~~~s~sK~l~-g-~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~ 294 (393)
T TIGR01822 218 GRG-SHELCGVMGRVDIITGTLGKALG-G-ASGGFTTARKEVVELLRQRSRPYLFSNSLPPAVVGASIKVLEMLEASNEL 294 (393)
T ss_pred CCc-hHHhcCCCCCCeEEEEEChHHhh-C-CCcEEEEeCHHHHHHHHHhCccceecCCCCHHHHHHHHHHHHHHhcCHHH
Confidence 221 1111222 34555 5999986 4 68999999998887765422212 222345556667788877644 457
Q ss_pred HHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccC-------CCCEEE
Q psy6547 163 IENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPI-------SNNIIR 235 (266)
Q Consensus 163 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~-------~~~~iR 235 (266)
.++++++++++++.|++ .+.... .+.+. ++.+.+++ ..++.++++.|.++||.+... +...+|
T Consensus 295 ~~~~~~~~~~l~~~L~~-~g~~~~----~~~~~---~~~i~~~~--~~~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~iR 364 (393)
T TIGR01822 295 RDRLWANTRYFRERMEA-AGFDIK----PADHP---IIPVMLYD--AVLAQRFARRLLEEGIYVTGFFYPVVPKGQARIR 364 (393)
T ss_pred HHHHHHHHHHHHHHHHH-cCCCCC----CCCCC---EEEEEeCC--HHHHHHHHHHHHHCCeeEeeeCCCCCCCCCceEE
Confidence 88999999999999987 432211 12233 67766654 346788999999999988631 235799
Q ss_pred EeccCCCCHHHHHHHHHHHHHHHHHH
Q psy6547 236 LSPALNITEQELREGLDIIINTINTM 261 (266)
Q Consensus 236 ~~~~~~~t~~~i~~~~~~l~~~~~~~ 261 (266)
++++..+|++++++++++|++++++.
T Consensus 365 is~~~~~t~edi~~~~~~l~~~~~~~ 390 (393)
T TIGR01822 365 VQISAAHTEEQLDRAVEAFTRIGREL 390 (393)
T ss_pred EEECCCCCHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999987653
No 127
>PRK05764 aspartate aminotransferase; Provisional
Probab=99.90 E-value=2.1e-22 Score=176.66 Aligned_cols=237 Identities=19% Similarity=0.210 Sum_probs=168.0
Q ss_pred cCCCCCCceeecCC-------CHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccC
Q psy6547 13 FGPHMPGYNIIPYN-------DVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTG 85 (266)
Q Consensus 13 ~~~~~~~v~~~~~~-------d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~ 85 (266)
+.-.+.+++.++.+ |++++++.+ .+++++++++.++|++|.+ ++.+.+++|.++|++||+++|+||+|.+
T Consensus 132 ~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l--~~~~~~v~~~~p~NPtG~~-~~~~~~~~l~~~a~~~~~~ii~De~y~~ 208 (393)
T PRK05764 132 VKLAGGVPVFVPTGEENGFKLTVEQLEAAI--TPKTKALILNSPSNPTGAV-YSPEELEAIADVAVEHDIWVLSDEIYEK 208 (393)
T ss_pred HHHcCCEEEEEecCcccCCcCCHHHHHHhh--CccceEEEEECCCCCCCcc-cCHHHHHHHHHHHHHCCcEEEEeccccc
Confidence 34457777777763 578999988 3467888877778888877 8999999999999999999999999977
Q ss_pred cCCcCcc-ccc-----ccCCCCcCeeeeccccc-CCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHh
Q psy6547 86 LGRTGKL-LAI-----HYEDVRPDIVILGKALS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVIL 158 (266)
Q Consensus 86 ~~~~g~~-~~~-----~~~~~~~d~~~~sK~~~-~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~ 158 (266)
+...+.. ... +..+....+.++||.++ +| +|+||+++++++.+.+.........+.+++++.++..+++...
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G-~RiG~i~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~ 287 (393)
T PRK05764 209 LVYDGAEFTSIASLSPELRDRTITVNGFSKAYAMTG-WRLGYAAGPKELIKAMSKLQSHSTSNPTSIAQYAAVAALNGPQ 287 (393)
T ss_pred eeeCCCCcccHHHcCCCCcCCEEEEecCcccccCcc-ceeEEEecCHHHHHHHHHHHhhcccCCChHHHHHHHHHHcCCh
Confidence 6332321 111 11223344455999999 89 8999999999988887654444455678888888877775211
Q ss_pred h--ccHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCc---cchHHHHHHHHH-HCCceeccCC--
Q psy6547 159 E--ENMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSA---ILEVYDVCIKMK-DAGLVTKPIS-- 230 (266)
Q Consensus 159 ~--~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~---~~~~~~~~~~l~-~~gi~~~~~~-- 230 (266)
. +.+.++++++.+.+++.|++ .. .+.......|. ++|+.++... +.++.++.+.|. ++||.+.++.
T Consensus 288 ~~~~~~~~~~~~~~~~l~~~L~~-~~--g~~~~~~~g~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f 361 (393)
T PRK05764 288 DEVEEMRQAFEERRDLMVDGLNE-IP--GLECPKPEGAF---YVFPNVSKLLGKSITDSLEFAEALLEEAGVAVVPGIAF 361 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh-CC--CCcccCCCcce---EEEEecccccccccCCHHHHHHHHHHhCCEEEcccccc
Confidence 1 24566667777778888877 42 22221223456 7787776511 113578888876 5799998752
Q ss_pred --CCEEEEeccCCCCHHHHHHHHHHHHHHHHHH
Q psy6547 231 --NNIIRLSPALNITEQELREGLDIIINTINTM 261 (266)
Q Consensus 231 --~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~ 261 (266)
.+++|++. .++++++++++++|.++++++
T Consensus 362 ~~~~~vRis~--~~~~~~~~~~i~~l~~~~~~~ 392 (393)
T PRK05764 362 GAPGYVRLSY--ATSLEDLEEGLERIERFLESL 392 (393)
T ss_pred CCCCEEEEEe--cCCHHHHHHHHHHHHHHHHhh
Confidence 47999994 568999999999999988753
No 128
>PRK08153 histidinol-phosphate aminotransferase; Provisional
Probab=99.90 E-value=1.2e-22 Score=176.73 Aligned_cols=238 Identities=14% Similarity=0.100 Sum_probs=164.9
Q ss_pred cCcccccCCCCCCceeecCC----CHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEecc
Q psy6547 7 PTSYNEFGPHMPGYNIIPYN----DVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEV 82 (266)
Q Consensus 7 ~~~~~~~~~~~~~v~~~~~~----d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~ 82 (266)
|.+...+...+.+++.+|+. |++++++.+. ..++++++++.++|++|.+ ++.+.++++.+.|+ +|++||+||+
T Consensus 119 ~~~~~~~~~~g~~~~~vp~~~~~~~~~~l~~~~~-~~~~~~i~l~~P~NPtG~~-~~~~~l~~l~~~~~-~~~~lI~DE~ 195 (369)
T PRK08153 119 PTFNYHVAGFGGRLVTVPYRDDREDLDALLDAAR-RENAPLVYLANPDNPMGSW-HPAADIVAFIEALP-ETTLLVLDEA 195 (369)
T ss_pred hHHHHHHHHcCCeEEEeeCCCCCCCHHHHHHHhc-ccCCcEEEEeCCCCCCCCC-CCHHHHHHHHHhCC-CCcEEEEeCc
Confidence 33343444567788888853 4566655553 2367888876678888877 89999999999887 4999999999
Q ss_pred ccCcCCcCccccccc-CCCCcCeeeeccccc-CCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHh-h
Q psy6547 83 QTGLGRTGKLLAIHY-EDVRPDIVILGKALS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVIL-E 159 (266)
Q Consensus 83 ~~~~~~~g~~~~~~~-~~~~~d~~~~sK~~~-~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~-~ 159 (266)
|..|...|....+.. ......+.+|||.++ +| +|+||+++++++++.+.... .+++.+++++.++.++|+.-+ .
T Consensus 196 y~~~~~~~~~~~~~~~~~~~i~~~SfSK~~g~~G-lRiG~~v~~~~~~~~l~~~~--~~~~~s~~~q~~~~~~l~~~~~~ 272 (369)
T PRK08153 196 YCETAPAGAAPPIDTDDPNVIRMRTFSKAYGLAG-ARVGYAIGAPGTIKAFDKVR--NHFGMNRIAQAAALAALKDQAYL 272 (369)
T ss_pred hhhhcCcccchhhhhcCCCEEEEecchHhccCcc-hheeeeecCHHHHHHHHHhh--cCCCCCHHHHHHHHHHhcCHHHH
Confidence 988754443222211 111223455999998 99 99999999999888776432 346788999999988885211 1
Q ss_pred ccHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceec-cC---CCCEEE
Q psy6547 160 ENMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTK-PI---SNNIIR 235 (266)
Q Consensus 160 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~-~~---~~~~iR 235 (266)
+...+.++++++.+.+.|++ .+ +.. .+..+. |+++.++.. ...+.++.++|.++||.++ |+ ..+++|
T Consensus 273 ~~~~~~~~~~r~~~~~~L~~-~g---~~~-~p~~~~---f~~~~~~~~-~~~a~~l~~~l~~~Gi~v~~p~~~~~~~~iR 343 (369)
T PRK08153 273 AEVVGKIAAARDRIAAIARA-NG---LTP-LPSATN---FVAIDCGRD-GAFARAVLDGLIARDIFVRMPGVAPLDRCIR 343 (369)
T ss_pred HHHHHHHHHHHHHHHHHHHH-CC---Ccc-CCCcCc---EEEEECCCC-cccHHHHHHHHHHCCeEEeeCCCCCCCCeEE
Confidence 23445555666666666665 33 222 334566 888877531 3457889999999999996 43 247999
Q ss_pred EeccCCCCHHHHHHHHHHHHHHHHHHh
Q psy6547 236 LSPALNITEQELREGLDIIINTINTMA 262 (266)
Q Consensus 236 ~~~~~~~t~~~i~~~~~~l~~~~~~~~ 262 (266)
++.. ++++++++++.|++++..+.
T Consensus 344 is~~---~~~~~~~~~~al~~~~~~~~ 367 (369)
T PRK08153 344 VSCG---PDEELDLFAEALPEALEAAR 367 (369)
T ss_pred EecC---CHHHHHHHHHHHHHHHHHhh
Confidence 9933 79999999999999987544
No 129
>PRK07777 aminotransferase; Validated
Probab=99.90 E-value=9.8e-23 Score=178.38 Aligned_cols=232 Identities=19% Similarity=0.197 Sum_probs=163.6
Q ss_pred CCCCCceeecC--------CCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCc
Q psy6547 15 PHMPGYNIIPY--------NDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGL 86 (266)
Q Consensus 15 ~~~~~v~~~~~--------~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~ 86 (266)
-.+.+++.++. .|+++|++.+ .+++++|++++++|++|.+ ++.+.+++|.++|++||+++|+||+|.++
T Consensus 128 ~~g~~~~~~~~~~~~~~~~~d~~~l~~~~--~~~~~~v~l~~p~NPtG~~-~~~~~~~~l~~~~~~~~~~li~De~y~~~ 204 (387)
T PRK07777 128 MAGAHRVPVPLVPDGRGFALDLDALRAAV--TPRTRALIVNSPHNPTGTV-LTAAELAAIAELAVEHDLLVITDEVYEHL 204 (387)
T ss_pred HCCCEEEEeecCCccCCCcCCHHHHHHhc--CcccEEEEEcCCCCCCCcc-CCHHHHHHHHHHHHhcCcEEEEeccchhc
Confidence 34555666553 3678898888 3467889988888888887 79999999999999999999999999876
Q ss_pred CCcCc-cccccc----CCCCcCeeeeccccc-CCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHhh-
Q psy6547 87 GRTGK-LLAIHY----EDVRPDIVILGKALS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILE- 159 (266)
Q Consensus 87 ~~~g~-~~~~~~----~~~~~d~~~~sK~~~-~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~- 159 (266)
...+. ...+.. .+....+.++||.++ +| +|+||+++++++.+.+.......++..+.+.+.++..+++..+.
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G-lRiG~~~~~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~ 283 (387)
T PRK07777 205 VFDGARHLPLATLPGMRERTVTISSAAKTFNVTG-WKIGWACGPAPLIAAVRAAKQYLTYVGGAPFQPAVAHALDHEDAW 283 (387)
T ss_pred ccCCCCcccHhhCCCCcCcEEEEeechhhccCcC-ceeEEEecCHHHHHHHHHHHhhcccCCCCHHHHHHHHHHhCCcHH
Confidence 43332 111111 223344566999999 89 99999999998887776544444555566666666666642111
Q ss_pred -ccHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHH-HCCceeccCC-------
Q psy6547 160 -ENMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMK-DAGLVTKPIS------- 230 (266)
Q Consensus 160 -~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~-~~gi~~~~~~------- 230 (266)
+.+.++++++++.+.+.|++ .+.... ....|. ++|+.++.....++.+++++|+ ++||.+.|+.
T Consensus 284 ~~~~~~~~~~~~~~l~~~L~~-~~~~~~---~~~g~~---~~~~~~~~~~~~~~~~~~~~l~~~~gv~v~pg~~f~~~~~ 356 (387)
T PRK07777 284 VAALRDSLQAKRDRLAAGLAE-AGFEVH---DSAGTY---FLCADPRPLGYDDGTEFCRALPERVGVAAIPMSVFYDPAD 356 (387)
T ss_pred HHHHHHHHHHHHHHHHHHHHh-CCCCcc---CCCcce---EEEecccccCCCCHHHHHHHHHHhCCEEEeCchHhCCCCc
Confidence 24567778888888888887 432211 223456 7777765311236789999997 6799998752
Q ss_pred --CCEEEEeccCCCCHHHHHHHHHHHHHHHH
Q psy6547 231 --NNIIRLSPALNITEQELREGLDIIINTIN 259 (266)
Q Consensus 231 --~~~iR~~~~~~~t~~~i~~~~~~l~~~~~ 259 (266)
.+++|++.. .+++++++++++|.++..
T Consensus 357 ~~~~~~Ri~~~--~~~~~l~~~l~~l~~~~~ 385 (387)
T PRK07777 357 AWNHLVRFAFC--KRDDTLDEAIRRLRALRG 385 (387)
T ss_pred CCCCeEEEEec--CCHHHHHHHHHHHHHHhc
Confidence 358999954 589999999999987653
No 130
>PRK01533 histidinol-phosphate aminotransferase; Validated
Probab=99.90 E-value=5.7e-23 Score=178.26 Aligned_cols=229 Identities=13% Similarity=0.091 Sum_probs=164.9
Q ss_pred ccccCCCCCCceeecCC----CHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccC
Q psy6547 10 YNEFGPHMPGYNIIPYN----DVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTG 85 (266)
Q Consensus 10 ~~~~~~~~~~v~~~~~~----d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~ 85 (266)
...+...+.+++.++.+ |+++|++.++ +++++++++.++|++|.+ ++.+.+++|+++|++++ ++|+||+|.+
T Consensus 119 ~~~~~~~g~~v~~v~~~~~~~d~~~l~~~~~--~~~~~v~i~~P~NPTG~~-~~~~~l~~l~~~~~~~~-~~iiDe~y~~ 194 (366)
T PRK01533 119 RHHAIIEGCEVKEVALNNGVYDLDEISSVVD--NDTKIVWICNPNNPTGTY-VNDRKLTQFIEGISENT-LIVIDEAYYE 194 (366)
T ss_pred HHHHHHcCCEEEEeecCCCCcCHHHHHHHhC--cCCcEEEEeCCCCCCCCC-cCHHHHHHHHHhCCCCC-EEEEEccHHH
Confidence 34445567777777753 6899999883 457788877788889987 89999999999998876 5677999977
Q ss_pred cCCcCcc-c---ccccCCCCcCeeeeccccc-CCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHhh-
Q psy6547 86 LGRTGKL-L---AIHYEDVRPDIVILGKALS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILE- 159 (266)
Q Consensus 86 ~~~~g~~-~---~~~~~~~~~d~~~~sK~~~-~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~- 159 (266)
|...+.. . ..+..+....+.+|||.++ +| +|+||+++++++.+.+.... ..++.+.+++.++.++|+...-
T Consensus 195 ~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~l~G-lRiG~~i~~~~~~~~l~~~~--~~~~~~~~~q~aa~~~l~~~~~~ 271 (366)
T PRK01533 195 YVTAKDFPETLPLLEKHKNILVLRTFSKAYGLAS-FRVGYAVGHEELIEKLNVVR--LPFNVSSLAQKAATIAFGDDEFI 271 (366)
T ss_pred hhccccCcchhHHhccCCCEEEEeCchHHhcChH-HHHhHHhCCHHHHHHHHHhc--CCCCcCHHHHHHHHHHhCCHHHH
Confidence 6332211 1 1111223344455999999 99 99999999999888876532 4577899999999888853111
Q ss_pred ccHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccCCCCEEEEecc
Q psy6547 160 ENMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPISNNIIRLSPA 239 (266)
Q Consensus 160 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~iR~~~~ 239 (266)
+.+.+.+++.++++.+.++. ++ +.. .++.|+ |+|+.+++ +.++.+.|+++||.+++. .+++|++
T Consensus 272 ~~~~~~~~~~r~~~~~~l~~-~g---~~~-~~~~~n---f~~~~~~~-----~~~~~~~l~~~GI~Vr~~-~~~iRis-- 335 (366)
T PRK01533 272 EEIVRVNTEGLRQYESFCKE-NE---IPF-YQSQTN---FIFLPVEN-----GGEIYEACAHAGFIIRPF-PNGVRIT-- 335 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHh-CC---Ccc-CCCcCc---EEEEeCCC-----HHHHHHHHHHCCcEEccC-CCceEEe--
Confidence 22344445555555555555 32 332 345677 99998743 467999999999999996 6889999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHh
Q psy6547 240 LNITEQELREGLDIIINTINTMA 262 (266)
Q Consensus 240 ~~~t~~~i~~~~~~l~~~~~~~~ 262 (266)
..+.++++++++.|+++++...
T Consensus 336 -~~~~~~~~~l~~al~~~~~~~~ 357 (366)
T PRK01533 336 -VGTREQNEGVISVLQQHFENKK 357 (366)
T ss_pred -CCCHHHHHHHHHHHHHHHHhcc
Confidence 5588999999999999876643
No 131
>PLN02483 serine palmitoyltransferase
Probab=99.90 E-value=9.6e-22 Score=176.03 Aligned_cols=232 Identities=18% Similarity=0.237 Sum_probs=168.2
Q ss_pred cCCCCCCceeecCCCHHHHHHHHhcC-----CC------EEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEec
Q psy6547 13 FGPHMPGYNIIPYNDVDALEAKLKSN-----PN------ICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADE 81 (266)
Q Consensus 13 ~~~~~~~v~~~~~~d~~~l~~~l~~~-----~~------~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De 81 (266)
..-.+.+++.++++|++++++++++. ++ ..+|++++++++.|.+. ++++|.++|++||++||+||
T Consensus 202 ~~~~Ga~v~~~~~~d~~~le~~l~~~i~~~~p~t~~p~~k~livve~v~s~~G~~~----~l~~I~~la~~~~~~livDE 277 (489)
T PLN02483 202 ARGSGATIRVFQHNTPSHLEEVLREQIAEGQPRTHRPWKKIIVIVEGIYSMEGELC----KLPEIVAVCKKYKAYVYLDE 277 (489)
T ss_pred HHHcCCeEEEEeCCCHHHHHHHHHhhhhccccccccCCceEEEEECCCCCCCCccc----CHHHHHHHHHHcCCEEEEEC
Confidence 34467789999999999999888531 22 24777899999999887 99999999999999999999
Q ss_pred cccC--cCCcCcccccccCCC---CcCee--eecccccCCchhhhhheecHHhhhccCCCCCCCCC--CCcHHHHHHHHH
Q psy6547 82 VQTG--LGRTGKLLAIHYEDV---RPDIV--ILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTY--GGNPLACKLAMT 152 (266)
Q Consensus 82 ~~~~--~~~~g~~~~~~~~~~---~~d~~--~~sK~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~a~~~ 152 (266)
+|+- ++.+|.. ....+++ +.|++ ++||++++. .||+++++++++.+........+ +.++..++++.+
T Consensus 278 a~s~g~~G~~G~g-~~~~~~v~~~~~dI~~~SfSKs~g~~---GG~i~~~~~li~~l~~~~~~~~~~~~~~p~~~~~~~a 353 (489)
T PLN02483 278 AHSIGAVGKTGRG-VCELLGVDPADVDIMMGTFTKSFGSC---GGYIAGSKELIQYLKRTCPAHLYATSMSPPAVQQVIS 353 (489)
T ss_pred cCccCccCCCCCc-hHHhcCCCcccCcEEEEecchhcccC---ceEEEcCHHHHHHHHHhCccccccCCcCHHHHHHHHH
Confidence 9952 3344432 1222232 23444 699999742 58899999999888754333323 345566666778
Q ss_pred HHHHHhhc-------cHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCce
Q psy6547 153 ALDVILEE-------NMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLV 225 (266)
Q Consensus 153 ~l~~~~~~-------~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~ 225 (266)
+|+.+..+ +..++++++++++++.|++ ++...... . .+|++++.+.. ..+..+++++|+++||.
T Consensus 354 aL~~l~~~~g~~~~~~~~~~l~~~~~~l~~~L~~-~G~~v~~~---~---~sp~~~l~l~~--~~~~~~~~~~Ll~~GI~ 424 (489)
T PLN02483 354 AIKVILGEDGTNRGAQKLAQIRENSNFFRSELQK-MGFEVLGD---N---DSPVMPIMLYN--PAKIPAFSRECLKQNVA 424 (489)
T ss_pred HHHHHHhCccccchHHHHHHHHHHHHHHHHHHHH-CCCcccCC---C---CCCEEEEEECC--HHHHHHHHHHHHHCCcE
Confidence 88766422 3567888899999999998 54321111 1 22478877765 34567899999999999
Q ss_pred eccC-------CCCEEEEeccCCCCHHHHHHHHHHHHHHHHHH
Q psy6547 226 TKPI-------SNNIIRLSPALNITEQELREGLDIIINTINTM 261 (266)
Q Consensus 226 ~~~~-------~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~ 261 (266)
+.+. ..+.+|++++..+|++++++++++|+++++.+
T Consensus 425 v~~~~fp~~p~~~~~vRi~isa~~t~edId~~l~~L~~~~~~~ 467 (489)
T PLN02483 425 VVVVGFPATPLLLARARICISASHSREDLIKALEVISEVGDLV 467 (489)
T ss_pred EeeeCCCCCCCCCceEEEEeCCCCCHHHHHHHHHHHHHHHHHh
Confidence 9842 23689999999999999999999999988765
No 132
>PRK03317 histidinol-phosphate aminotransferase; Provisional
Probab=99.90 E-value=2.2e-22 Score=174.99 Aligned_cols=227 Identities=15% Similarity=0.090 Sum_probs=156.1
Q ss_pred cCCCCCCceeecCC-----CHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcC
Q psy6547 13 FGPHMPGYNIIPYN-----DVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLG 87 (266)
Q Consensus 13 ~~~~~~~v~~~~~~-----d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~ 87 (266)
+...+.+++.++.. |+++++++++++ ++++++++.++|++|.+ ++.+.+++|.+. ++++||+||+|++|.
T Consensus 129 ~~~~g~~~~~~~~~~~~~~d~~~l~~~~~~~-~~~~i~l~~p~NPtG~~-~~~~~l~~l~~~---~~~~lI~DE~y~~~~ 203 (368)
T PRK03317 129 ARGTHTEWVEGPRAADFTLDVDAAVAAIAEH-RPDVVFLTSPNNPTGTA-LPLDDVEAILDA---APGIVVVDEAYAEFR 203 (368)
T ss_pred HHhcCCeeEEcccCCCCCCCHHHHHHHHhcc-CCCEEEEeCCCCCCCCC-CCHHHHHHHHHH---CCceEEEeCCchhhc
Confidence 34455666666532 689999998543 46777777778889988 555555555544 479999999999886
Q ss_pred CcCcccccccCCCCcCee---eeccccc-CCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHhh-ccH
Q psy6547 88 RTGKLLAIHYEDVRPDIV---ILGKALS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILE-ENM 162 (266)
Q Consensus 88 ~~g~~~~~~~~~~~~d~~---~~sK~~~-~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~-~~~ 162 (266)
+.|........+..++++ +|||.++ +| +|+||+++++++++.+.... .+++.+++++.++.++++..+. .+.
T Consensus 204 ~~~~~~~~~~~~~~~~~i~~~SfSK~~g~~G-lRiG~~~~~~~~~~~l~~~~--~~~~~s~~~~~a~~~~l~~~~~~~~~ 280 (368)
T PRK03317 204 RSGTPSALTLLPEYPRLVVSRTMSKAFAFAG-GRLGYLAAAPAVVDALRLVR--LPYHLSAVTQAAARAALRHADELLAS 280 (368)
T ss_pred ccCCcCHHHHHHhCCCEEEEEechhhhccch-hhhhhhhCCHHHHHHHHhcC--CCCCCCHHHHHHHHHHhhCHHHHHHH
Confidence 544332222223334555 6999998 89 99999999999998887533 4677889999998888875322 223
Q ss_pred HHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccCC-CCEEEEeccCC
Q psy6547 163 IENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPIS-NNIIRLSPALN 241 (266)
Q Consensus 163 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~-~~~iR~~~~~~ 241 (266)
.+++.++++.+.+.|+. .+ +.. ..+.|. ++.+.... +..++++.|+++||.+++.+ .+++|++.
T Consensus 281 ~~~~~~~~~~l~~~L~~-~g---~~~-~~~~~~---~~~~~~~~----~~~~~~~~l~~~Gv~v~~~~~~~~iRi~~--- 345 (368)
T PRK03317 281 VAALRAERDRVVAWLRE-LG---LRV-APSDAN---FVLFGRFA----DRHAVWQGLLDRGVLIRDVGIPGWLRVTI--- 345 (368)
T ss_pred HHHHHHHHHHHHHHHHH-CC---CEe-CCCCCc---EEEEeccC----CHHHHHHHHHHCCEEEEeCCCCCeEEEec---
Confidence 34455666666666665 32 222 223344 55442222 46789999999999998754 58999993
Q ss_pred CCHHHHHHHHHHHHHHHHHHh
Q psy6547 242 ITEQELREGLDIIINTINTMA 262 (266)
Q Consensus 242 ~t~~~i~~~~~~l~~~~~~~~ 262 (266)
.+.++++++++.|+++++...
T Consensus 346 ~~~~~~~~~~~~l~~~~~~~~ 366 (368)
T PRK03317 346 GTPEENDAFLAALAEVLATEL 366 (368)
T ss_pred CCHHHHHHHHHHHHHHHHHhh
Confidence 378899999999999876543
No 133
>TIGR01825 gly_Cac_T_rel pyridoxal phosphate-dependent acyltransferase, putative. This model represents an enzyme subfamily related to three known enzymes; it appears closest to glycine C-acteyltransferase, shows no overlap with it in species distribution, and may share that function. The three closely related enzymes are glycine C-acetyltransferase (2-amino-3-ketobutyrate coenzyme A ligase), 5-aminolevulinic acid synthase, and 8-amino-7-oxononanoate synthase. All transfer the R-group (acetyl, succinyl, or 6-carboxyhexanoyl) from coenzyme A to an amino acid (Gly, Gly, Ala, respectively), with release of CO2 for the latter two reactions.
Probab=99.90 E-value=9.5e-22 Score=172.03 Aligned_cols=228 Identities=17% Similarity=0.229 Sum_probs=165.8
Q ss_pred CCCCceeecCCCHHHHHHHHhcC--CCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccC--cCCcCc
Q psy6547 16 HMPGYNIIPYNDVDALEAKLKSN--PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTG--LGRTGK 91 (266)
Q Consensus 16 ~~~~v~~~~~~d~~~l~~~l~~~--~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~--~~~~g~ 91 (266)
.+.+++.+++.|++++++.+++. +++++|+++++++++|.+. ++++|.++|++||+++|+||+|+. +++.|.
T Consensus 137 ~g~~~~~~~~~d~~~l~~~l~~~~~~~~~~v~~~~v~~~tG~~~----~~~~i~~l~~~~~~~li~De~~~~~~~~~~~~ 212 (385)
T TIGR01825 137 TKATKKIYKHADMDDLDRVLRENPSYGKKLIVTDGVFSMDGDVA----PLPEIVELAERYGAVTYVDDAHGSGVMGEAGR 212 (385)
T ss_pred cCCceEEeCCCCHHHHHHHHHhhccCCCeEEEEecCCcCCCCcc----CHHHHHHHHHHhCCEEEEECcccccCcCCCCC
Confidence 45566777888999999988653 3688999999999999876 789999999999999999999954 332232
Q ss_pred cccccc----CCCCcCeeeecccccCCchhhhhheecHHhhhccCCCCC-C-CCCCCcHHHHHHHHHHHHHHhh-ccHHH
Q psy6547 92 LLAIHY----EDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTH-G-STYGGNPLACKLAMTALDVILE-ENMIE 164 (266)
Q Consensus 92 ~~~~~~----~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~a~~~~l~~~~~-~~~~~ 164 (266)
. .... .+.+..+.++||++++ +.||+++++++++.+..... . .+...++..+.++.++++.+.. ++..+
T Consensus 213 ~-~~~~~~~~~~~~i~~~s~sK~~~~---~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~ 288 (385)
T TIGR01825 213 G-TVHHFGLEDKVDIQVGTLSKAIGV---VGGYAAGHKELIEYLKNRARPFLFSTAQPPAVVAALAAAVDELQRSPELME 288 (385)
T ss_pred c-cHhhcCCCcCCcEEEEeccHHhhc---CCCEEecCHHHHHHHHHhCccccccCCCCHHHHHHHHHHHHHHhcCHHHHH
Confidence 1 1111 2334445779999963 35788888888877753321 1 1223466778888888887644 45788
Q ss_pred HHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceecc-------CCCCEEEEe
Q psy6547 165 NAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKP-------ISNNIIRLS 237 (266)
Q Consensus 165 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~-------~~~~~iR~~ 237 (266)
++.++++++.+.|++ ++.... ...+. ++.+.++. ..+..++++.|+++||.+.+ .+..++|++
T Consensus 289 ~~~~~~~~l~~~L~~-~g~~~~----~~~~~---~~~~~~~~--~~~~~~~~~~L~~~gi~v~~~~~~~~~~~~~~iRi~ 358 (385)
T TIGR01825 289 RLWDNTRFFKAGLGK-LGYDTG----GSETP---ITPVVIGD--EKAAQEFSRRLFDEGIFAQSIVFPTVPRGTARIRNI 358 (385)
T ss_pred HHHHHHHHHHHHHHH-cCCCCC----CCCCC---EEEEEECC--HHHHHHHHHHHHHCCcEEcccCCCCCCCCCceEEEE
Confidence 888899999999987 543222 12233 67766654 33567899999999999853 134789999
Q ss_pred ccCCCCHHHHHHHHHHHHHHHHHH
Q psy6547 238 PALNITEQELREGLDIIINTINTM 261 (266)
Q Consensus 238 ~~~~~t~~~i~~~~~~l~~~~~~~ 261 (266)
+++.++++++++++++|+++++++
T Consensus 359 ~~~~~~~e~i~~~~~~l~~~~~~~ 382 (385)
T TIGR01825 359 PTAEHTKDDLDQALDAYEKVGKEL 382 (385)
T ss_pred EcCCCCHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999988653
No 134
>PRK07683 aminotransferase A; Validated
Probab=99.90 E-value=2.2e-22 Score=176.15 Aligned_cols=237 Identities=17% Similarity=0.165 Sum_probs=165.3
Q ss_pred cccCCCCCCceeecCC------CHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEecccc
Q psy6547 11 NEFGPHMPGYNIIPYN------DVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQT 84 (266)
Q Consensus 11 ~~~~~~~~~v~~~~~~------d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~ 84 (266)
..+...+.+++.++.+ |.+++++.+. ++++++++..++|++|.+ ++.+.+++|.++|+++|+++|+||+|.
T Consensus 128 ~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~i~i~~p~NPtG~~-~s~~~~~~l~~~~~~~~~~ii~De~y~ 204 (387)
T PRK07683 128 PIIRLCGAKPVFIDTRSTGFRLTAEALENAIT--EKTRCVVLPYPSNPTGVT-LSKEELQDIADVLKDKNIFVLSDEIYS 204 (387)
T ss_pred HHHHHcCCEEEEeecCcccCCCCHHHHHHhcC--cCceEEEEeCCCCCCCcC-CCHHHHHHHHHHHHHcCeEEEEecccc
Confidence 3345567777777643 5688888883 467888888788889987 899999999999999999999999998
Q ss_pred CcCCcCccccccc----CCCCcCeeeeccccc-CCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHh-
Q psy6547 85 GLGRTGKLLAIHY----EDVRPDIVILGKALS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVIL- 158 (266)
Q Consensus 85 ~~~~~g~~~~~~~----~~~~~d~~~~sK~~~-~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~- 158 (266)
++...+....... .+....+.++||.++ +| +|+||+++++++++.+.........+.+.+.+.++...++...
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~pG-lRiG~i~~~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~ 283 (387)
T PRK07683 205 ELVYEQPHTSIAHFPEMREKTIVINGLSKSHSMTG-WRIGFLFAPSYLAKHILKVHQYNVTCASSISQYAALEALTAGKD 283 (387)
T ss_pred cceeCCCcCChhhccCCcCCeEEEeeccccccCcc-ceeEEEEcCHHHHHHHHHHHHhccCCCChHHHHHHHHHHhCChH
Confidence 7633222212111 122344555999999 99 9999999999988887654333344456677777776665321
Q ss_pred -hccHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHH-HHCCceeccC------C
Q psy6547 159 -EENMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKM-KDAGLVTKPI------S 230 (266)
Q Consensus 159 -~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l-~~~gi~~~~~------~ 230 (266)
.+..+++++++++.+.+.|.+ .+ +....+..|. ++|..++.. ..+..+++..+ .++||.+.|+ .
T Consensus 284 ~~~~~~~~~~~~~~~~~~~l~~-~~---~~~~~~~~~~---~~~~~~~~~-~~~~~~~~~~ll~~~gI~v~pg~~f~~~~ 355 (387)
T PRK07683 284 DAKMMRHQYKKRRDYVYNRLIS-MG---LDVEKPTGAF---YLFPSIGHF-TMSSFDFALDLVEEAGLAVVPGSAFSEYG 355 (387)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-cC---CcccCCCeeE---EEEEecccC-CCCHHHHHHHHHHhCCEEEcCchhhCCCC
Confidence 123556667777777777776 32 2221223455 566555431 23566787664 6789999885 2
Q ss_pred CCEEEEeccCCCCHHHHHHHHHHHHHHHHHH
Q psy6547 231 NNIIRLSPALNITEQELREGLDIIINTINTM 261 (266)
Q Consensus 231 ~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~ 261 (266)
.+++|++.. .+++++.+++++|.+.+++-
T Consensus 356 ~~~~Ri~~~--~~~~~~~~al~~l~~~l~~~ 384 (387)
T PRK07683 356 EGYVRLSYA--YSIETLKEGLDRLEAFLQQK 384 (387)
T ss_pred CCeEEEEec--CCHHHHHHHHHHHHHHHHhh
Confidence 479999955 58999999999999988653
No 135
>PRK08636 aspartate aminotransferase; Provisional
Probab=99.90 E-value=1.7e-22 Score=177.66 Aligned_cols=247 Identities=17% Similarity=0.202 Sum_probs=170.0
Q ss_pred cCCcCcccccCCCCCCceeecCC-------CHH----HHHHHHhcC-CCEEEEEEccccCCCCcccCChHHHHHHHHHHH
Q psy6547 4 TTDPTSYNEFGPHMPGYNIIPYN-------DVD----ALEAKLKSN-PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCS 71 (266)
Q Consensus 4 ~~~~~~~~~~~~~~~~v~~~~~~-------d~~----~l~~~l~~~-~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~ 71 (266)
.++|.+...+...+.+++.++.+ |++ .+++++++. +++++++++.++|++|.+ ++.+.+++|.++|+
T Consensus 127 P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~i~~~~P~NPTG~~-~s~~~~~~l~~~a~ 205 (403)
T PRK08636 127 PAYPIHSQAFILAGGNVHKMPLEYNEDFELDEDQFFENLEKALRESSPKPKYVVVNFPHNPTTAT-VEKSFYERLVALAK 205 (403)
T ss_pred CCCcchHHHHHhcCCEEEEEeccccccCccChhhhhhHHHHHHhhccCCceEEEEeCCCCCCCcc-CCHHHHHHHHHHHH
Confidence 34455555667778888887642 344 456667543 368888888778888887 99999999999999
Q ss_pred hcCCEEEEeccccCcCCcCcc-cccccC----CCCcCeeeeccccc-CCchhhhhheecHHhhhccCCCCCCCCCCCcHH
Q psy6547 72 QYNVLFIADEVQTGLGRTGKL-LAIHYE----DVRPDIVILGKALS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPL 145 (266)
Q Consensus 72 ~~g~~li~De~~~~~~~~g~~-~~~~~~----~~~~d~~~~sK~~~-~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (266)
+|+++||+||+|..+...+.. .+.... ++...+.+|||.++ +| +|+||+++++++++.+........++.+.+
T Consensus 206 ~~~~~II~De~Y~~l~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G-lRiG~iv~~~~li~~~~~~~~~~~~~~~~~ 284 (403)
T PRK08636 206 KERFYIISDIAYADITFDGYKTPSILEVEGAKDVAVESYTLSKSYNMAG-WRVGFVVGNKKLVGALKKIKSWLDYGMFTP 284 (403)
T ss_pred HcCcEEEEeccchhhccCCCCCCChhcCCCccccEEEEEecccccCCcc-ceeeeeeCCHHHHHHHHHHHHHhcccCChH
Confidence 999999999999876433321 111111 12233445999996 99 999999999998887765444334555666
Q ss_pred HHHHHHHHHHHHhh--ccHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCc-cchHHHHHHHHH-H
Q psy6547 146 ACKLAMTALDVILE--ENMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSA-ILEVYDVCIKMK-D 221 (266)
Q Consensus 146 ~~~a~~~~l~~~~~--~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~l~-~ 221 (266)
.+.++..+++.... +.+.+.++++++.+.+.|++ .+ +....+..|. ++|+.+++.. ..+..+++.+++ +
T Consensus 285 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~---~~~~~p~~g~---~~~~~l~~~~~~~~~~~l~~~ll~~ 357 (403)
T PRK08636 285 IQVAATIALDGDQSCVEEIRETYRKRRDVLIESFAN-AG---WELQKPRASM---FVWAKIPEPARHLGSLEFSKQLLTE 357 (403)
T ss_pred HHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHH-CC---CcccCCCcce---EEEEECCCccCCCCHHHHHHHHHHh
Confidence 66666555532111 23455566666677777766 32 2221234677 9999987521 124678887755 6
Q ss_pred CCceeccC------CCCEEEEeccCCCCHHHHHHHHHHHHHHHHHH
Q psy6547 222 AGLVTKPI------SNNIIRLSPALNITEQELREGLDIIINTINTM 261 (266)
Q Consensus 222 ~gi~~~~~------~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~ 261 (266)
+||.+.|+ +.+++|++.. .+++++++++++|.++++.+
T Consensus 358 ~gV~v~pg~~f~~~~~~~iRi~~~--~~~~~l~~~~~rl~~~l~~~ 401 (403)
T PRK08636 358 AKVAVSPGIGFGEYGDEYVRIALI--ENENRIRQAARNIKKFLKEL 401 (403)
T ss_pred CCEEEecchhhCcCCCCeEEEEec--CCHHHHHHHHHHHHHHHHhh
Confidence 89999886 2479999964 68999999999999998764
No 136
>PRK08960 hypothetical protein; Provisional
Probab=99.90 E-value=4.3e-22 Score=174.33 Aligned_cols=239 Identities=13% Similarity=0.119 Sum_probs=166.3
Q ss_pred CcCcccccCCCCCCceeecC-------CCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEE
Q psy6547 6 DPTSYNEFGPHMPGYNIIPY-------NDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFI 78 (266)
Q Consensus 6 ~~~~~~~~~~~~~~v~~~~~-------~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li 78 (266)
+|.....+...+.+++.++. .|++++++.++ ++++++++..++|++|.+ ++.+.+++|+++|++||+++|
T Consensus 126 y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~--~~~~~i~i~~p~NPtG~~-~~~~~~~~l~~~~~~~~~~li 202 (387)
T PRK08960 126 YPCNRHFLRLVEGAAQLVPVGPDSRYQLTPALVERHWN--ADTVGALVASPANPTGTL-LSRDELAALSQALRARGGHLV 202 (387)
T ss_pred CcchHHHHHhcCCeEEEEecCcccCCCCCHHHHHHHhC--ccceEEEEECCCCCCCcC-cCHHHHHHHHHHHHHcCCEEE
Confidence 34444445556667777763 25788988883 346666666678888887 899999999999999999999
Q ss_pred EeccccCcCCcCcccccccCCCCcC---eeeeccccc-CCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHHH
Q psy6547 79 ADEVQTGLGRTGKLLAIHYEDVRPD---IVILGKALS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTAL 154 (266)
Q Consensus 79 ~De~~~~~~~~g~~~~~~~~~~~~d---~~~~sK~~~-~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l 154 (266)
+||+|.++...+.... .....++ +.+|||.++ +| +|+||+++++++++.+.......+.+.+.+.+.++.+++
T Consensus 203 ~De~Y~~~~~~~~~~~--~~~~~~~vi~~~S~SK~~g~~G-lRiG~~~~~~~~~~~~~~~~~~~~~~~s~~~q~a~~~~l 279 (387)
T PRK08960 203 VDEIYHGLTYGVDAAS--VLEVDDDAFVLNSFSKYFGMTG-WRLGWLVAPPAAVPELEKLAQNLYISASTPAQHAALACF 279 (387)
T ss_pred EEccccccccCCCCCC--hhhccCCEEEEeecccccCCcc-cEEEEEEcCHHHHHHHHHHHhhhccCCCHHHHHHHHHHh
Confidence 9999987633222111 1122333 344999997 89 999999999998887765545555667888888887777
Q ss_pred HHH-hh--ccHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHH-HCCceeccC-
Q psy6547 155 DVI-LE--ENMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMK-DAGLVTKPI- 229 (266)
Q Consensus 155 ~~~-~~--~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~-~~gi~~~~~- 229 (266)
+.. .. ...++.++++++.+.+.|++ .+.... . .+..|. ++|+.+++. ..+..+++++|+ ++||.+.|+
T Consensus 280 ~~~~~~~l~~~~~~~~~~~~~l~~~L~~-~~~~~~-~-~p~g~~---f~~~~~~~~-~~~~~~~~~~ll~~~gi~v~pg~ 352 (387)
T PRK08960 280 EPETLAILEARRAEFARRRDFLLPALRE-LGFGIA-V-EPQGAF---YLYADISAF-GGDAFAFCRHFLETEHVAFTPGL 352 (387)
T ss_pred hcCcHHHHHHHHHHHHHHHHHHHHHHHh-cCCcCC-c-CCCeeE---EEEEecccc-CCCHHHHHHHHHHhCCEEEcCch
Confidence 521 11 23455566677777777776 432211 1 233467 888888641 135678998876 689999975
Q ss_pred ------CCCEEEEeccCCCCHHHHHHHHHHHHHHHH
Q psy6547 230 ------SNNIIRLSPALNITEQELREGLDIIINTIN 259 (266)
Q Consensus 230 ------~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~ 259 (266)
..+++|++.. .+.+.+.+++++|.+++.
T Consensus 353 ~f~~~~~~~~iRi~~~--~~~~~l~~al~~l~~~~~ 386 (387)
T PRK08960 353 DFGRHQAGQHVRFAYT--QSLPRLQEAVERIARGLR 386 (387)
T ss_pred HhCCCCCCCeEEEEec--CCHHHHHHHHHHHHHHHh
Confidence 2369999966 478899999999988764
No 137
>PRK12414 putative aminotransferase; Provisional
Probab=99.90 E-value=1.4e-22 Score=177.12 Aligned_cols=230 Identities=17% Similarity=0.163 Sum_probs=161.9
Q ss_pred CCCCCCceeecCC------CHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcC
Q psy6547 14 GPHMPGYNIIPYN------DVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLG 87 (266)
Q Consensus 14 ~~~~~~v~~~~~~------d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~ 87 (266)
...+.+++.++.+ |+++|++.+ .+++++++++.++|++|.+ ++.+.+++|.++|++||+++|+||+|..+.
T Consensus 132 ~~~g~~~~~v~~~~~~~~~d~~~l~~~l--~~~~~~v~i~~p~NPTG~~-~s~~~~~~i~~~a~~~~~~ii~De~Y~~~~ 208 (384)
T PRK12414 132 RLQGATPVAIKLSPEDFRVNWDEVAAAI--TPRTRMIIVNTPHNPSATV-FSAADLARLAQLTRNTDIVILSDEVYEHVV 208 (384)
T ss_pred HHcCCEEEEEecCccccccCHHHHHhhc--CcccEEEEEcCCCCCCCcC-CCHHHHHHHHHHHHHCCeEEEEhhhhhhcc
Confidence 4456667776642 678899888 3468888888888888987 899999999999999999999999998764
Q ss_pred CcCccc-ccc-cCC---CCcCeeeeccccc-CCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHh-hc
Q psy6547 88 RTGKLL-AIH-YED---VRPDIVILGKALS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVIL-EE 160 (266)
Q Consensus 88 ~~g~~~-~~~-~~~---~~~d~~~~sK~~~-~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~-~~ 160 (266)
..+... .+. ..+ ....+.+|||.++ +| +|+||+++++++++.+........++.+.+.+.++..+|+.-. ..
T Consensus 209 ~~~~~~~~~~~~~~~~~~~i~~~SfSK~~~~pG-lRiG~~v~~~~l~~~l~~~~~~~~~~~s~~~q~a~~~~l~~~~~~~ 287 (384)
T PRK12414 209 FDGARHHSMARHRELAERSVIVSSFGKSYHVTG-WRVGYCLAPAELMDEIRKVHQFMVFSADTPMQHAFAEALAEPASYL 287 (384)
T ss_pred CCCCCccCcccCcCccCcEEEEecccccccCcc-ceEEEEecCHHHHHHHHHHHhheecCCCcHHHHHHHHHhcCChHHH
Confidence 333211 111 111 2334455999998 99 9999999999988887765555667778888888877774211 11
Q ss_pred cHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHH-HHHHHCCceeccCC--------C
Q psy6547 161 NMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVC-IKMKDAGLVTKPIS--------N 231 (266)
Q Consensus 161 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~l~~~gi~~~~~~--------~ 231 (266)
...+.++++++.+.+.|++ .+ +.......|. ++|+.++.....+..+++ +.|.++||.+.|+. .
T Consensus 288 ~~~~~~~~~r~~l~~~L~~-~g---~~~~~~~gg~---~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~pg~~f~~~~~~~ 360 (384)
T PRK12414 288 GLGAFYQRKRDLLARELAG-SR---FELLPSEGSF---FMLARFRHFSDESDSDFVLRLIRDARVATIPLSAFYTDGTDT 360 (384)
T ss_pred HHHHHHHHHHHHHHHHHHh-CC---CeecCCCcce---EEEEcccccCCCCHHHHHHHHHHhCCEEEecchhhcCCCCCC
Confidence 3566777788888888877 43 2221233456 677676531112345566 55668899999852 4
Q ss_pred CEEEEeccCCCCHHHHHHHHHHHHH
Q psy6547 232 NIIRLSPALNITEQELREGLDIIIN 256 (266)
Q Consensus 232 ~~iR~~~~~~~t~~~i~~~~~~l~~ 256 (266)
+++|++.. .+++++++++++|.+
T Consensus 361 ~~iRis~~--~~~~~~~~~~~rl~~ 383 (384)
T PRK12414 361 GLIRLSFS--KDDATLVEGARRLCS 383 (384)
T ss_pred CEEEEEec--CCHHHHHHHHHHHhh
Confidence 68999955 579999999999864
No 138
>PLN02187 rooty/superroot1
Probab=99.90 E-value=2.3e-22 Score=179.13 Aligned_cols=241 Identities=15% Similarity=0.112 Sum_probs=159.8
Q ss_pred cCCCCCCceeecC-------CCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccC
Q psy6547 13 FGPHMPGYNIIPY-------NDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTG 85 (266)
Q Consensus 13 ~~~~~~~v~~~~~-------~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~ 85 (266)
..-.+.+++.++. .|+++|++++ .++++++++..++|++|.+ ++.+.+++|.++|++||++||+||+|.+
T Consensus 172 ~~~~g~~~~~~~l~~~~~~~~d~~~l~~~~--~~~~~~v~i~nP~NPTG~v-~s~e~l~~i~~~a~~~~i~iI~DE~Y~~ 248 (462)
T PLN02187 172 AAYSGLEVRKFDLLPEKEWEIDLEGIEAIA--DENTVAMVVINPNNPCGNV-YSHDHLKKVAETARKLGIMVISDEVYDR 248 (462)
T ss_pred HHHcCCEEEEEeCccccCCccCHHHHHHhc--CCCcEEEEEeCCCCCCCCc-cCHHHHHHHHHHHHHCCCEEEEeccccc
Confidence 3445667777653 2689999888 3345666655567888877 8999999999999999999999999988
Q ss_pred cCCcCccc-ccccC-CC--CcCeeeeccccc-CCchhhhhheec-H-Hh---hhccCCCCCCCCC--CCcHHHHHHHHHH
Q psy6547 86 LGRTGKLL-AIHYE-DV--RPDIVILGKALS-GGLYPISAVLAD-D-EV---MGTLVPGTHGSTY--GGNPLACKLAMTA 153 (266)
Q Consensus 86 ~~~~g~~~-~~~~~-~~--~~d~~~~sK~~~-~g~~~~g~~~~~-~-~~---~~~~~~~~~~~~~--~~~~~~~~a~~~~ 153 (266)
+...+..+ +...+ .. ...+.+|||.++ +| +|+||++++ + .+ .+.+........+ +++.+.+.++.++
T Consensus 249 l~f~~~~~~s~~~~~~~~~vi~l~SfSK~f~~pG-lRiG~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~a~~~~ 327 (462)
T PLN02187 249 TIFGDNPFVSMGKFASIVPVLTLAGISKGWVVPG-WKIGWIALNDPEGVFETTKVLQSIKQNLDVTPDPATIIQAALPAI 327 (462)
T ss_pred cccCCCCceeHHHhccCCcEEEEecchhhcCCcc-ceeEEEEecCchhHHHHHHHHHHHHHhccccCCCCHHHHHHHHHH
Confidence 64333222 22111 11 233344999977 89 999999973 2 22 2233322222222 3477888888888
Q ss_pred HHHHhh---ccHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeC--ccc-hHHHHHHH-HHHCCcee
Q psy6547 154 LDVILE---ENMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVS--AIL-EVYDVCIK-MKDAGLVT 226 (266)
Q Consensus 154 l~~~~~---~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~--~~~-~~~~~~~~-l~~~gi~~ 226 (266)
|+.... ++..+.++++++.+.+.|++ ++...... .+..|+ |+|+.++.. .+. +..+++.+ +.++||.+
T Consensus 328 L~~~~~~~l~~~~~~l~~~r~~l~~~L~~-~~~~~~~~-~P~gg~---fl~~~l~~~~~~~~~~~~~~~~~ll~~~gV~v 402 (462)
T PLN02187 328 LEKADKNFFAKKNKILKHNVDLVCDRLKD-IPCVVCPK-KPESCT---YLLTKLELSLMDNIKDDIDFCVKLAREENLVF 402 (462)
T ss_pred HhcCcHHHHHHHHHHHHHHHHHHHHHHhh-CCCCcCCC-CCCEeE---EEEeecChhhCCCCCCHHHHHHHHHhhCCEEE
Confidence 853111 33556677777788888877 43221111 234467 888876521 111 34566555 47889999
Q ss_pred ccC----CCCEEEEeccCCCCHHHHHHHHHHHHHHHHHHhhc
Q psy6547 227 KPI----SNNIIRLSPALNITEQELREGLDIIINTINTMAAK 264 (266)
Q Consensus 227 ~~~----~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~~~~ 264 (266)
.|+ ..+++|++. ..+++++++++++|.++++++.++
T Consensus 403 ~pG~~fg~~~~iRis~--~~~~e~l~~al~rL~~~l~~~~~~ 442 (462)
T PLN02187 403 LPGDALGLKNWMRITI--GVEAHMLEDALERLKGFCTRHAKK 442 (462)
T ss_pred ECccccCCCCeEEEEe--CCCHHHHHHHHHHHHHHHHHhhhc
Confidence 986 358999994 467999999999999999887654
No 139
>TIGR00858 bioF 8-amino-7-oxononanoate synthase. This model represents 8-amino-7-oxononanoate synthase, the BioF protein of biotin biosynthesis. This model is based on a careful phylogenetic analysis to separate members of this family from 2-amino-3-ketobutyrate and other related pyridoxal phosphate-dependent enzymes. In several species, including Staphylococcus and Coxiella, a candidate 8-amino-7-oxononanoate synthase is confirmed by location in the midst of a biotin biosynthesis operon but scores below the trusted cutoff of this model.
Probab=99.89 E-value=7.4e-22 Score=170.98 Aligned_cols=225 Identities=17% Similarity=0.175 Sum_probs=164.7
Q ss_pred cCCCCCCceeecCCCHHHHHHHHhcC--CCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCc--CC
Q psy6547 13 FGPHMPGYNIIPYNDVDALEAKLKSN--PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGL--GR 88 (266)
Q Consensus 13 ~~~~~~~v~~~~~~d~~~l~~~l~~~--~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~--~~ 88 (266)
..-.+.+++.++.+|+++|++.+++. +++++++++++++++|... ++++|.++|+++|+++|+||+|+.+ +.
T Consensus 117 ~~~~g~~~~~~~~~d~~~l~~~~~~~~~~~~~~v~~~~~~~~~G~~~----~~~~i~~l~~~~~~~li~De~~~~~~~~~ 192 (360)
T TIGR00858 117 CRLSGARVRRYRHNDVEHLERLLEKNRGERRKLIVTDGVFSMDGDIA----PLPQLVALAERYGAWLMVDDAHGTGVLGE 192 (360)
T ss_pred HHhcCCceEEecCCCHHHHHHHHHHcccCCCeEEEEeCCccCCCCCc----CHHHHHHHHHHcCcEEEEECcccccCcCC
Confidence 34456778888889999999999653 3578888998888888775 7999999999999999999999532 11
Q ss_pred cCcccccccCCC-----CcCeeeecccccCCchhhhhheecHHhhhccCCCCC--CCCCCCcHHHHHHHHHHHHHHhh-c
Q psy6547 89 TGKLLAIHYEDV-----RPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTH--GSTYGGNPLACKLAMTALDVILE-E 160 (266)
Q Consensus 89 ~g~~~~~~~~~~-----~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~a~~~~l~~~~~-~ 160 (266)
.+.. ....+++ +..+.++||++++ +.||+++++++.+.+..... ..+.+.++..++++.++++.+.. +
T Consensus 193 ~~~~-~~~~~~~~~~~~~i~i~s~sK~~~~---~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~ 268 (360)
T TIGR00858 193 DGRG-TLEHFGLKPEPVDIQVGTLSKALGS---YGAYVAGSQALIDYLINRARTLIFSTALPPAVAAAALAALELIQEEP 268 (360)
T ss_pred CCCc-hHHhcCCCccCCcEEEEechhhhhc---cCcEEEcCHHHHHHHHHhCccceecCCCCHHHHHHHHHHHHHHhhCH
Confidence 1111 1122222 3336679999984 34788888888776643221 22233556667777788876654 3
Q ss_pred cHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccC-------CCCE
Q psy6547 161 NMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPI-------SNNI 233 (266)
Q Consensus 161 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~-------~~~~ 233 (266)
+..++++++++++.+.|++ ++... ....+. ++|+.++. ..+..+++++|+++||.+.+. +.++
T Consensus 269 ~~~~~~~~~~~~l~~~L~~-~~~~~----~~~~~~---~~~~~~~~--~~~~~~~~~~l~~~gI~v~~~~~~~~~~~~~~ 338 (360)
T TIGR00858 269 WRREKLLALIARLRAGLEA-LGFTL----MPSCTP---IVPVIIGD--NASALALAEELQQQGIFVGAIRPPTVPAGTSR 338 (360)
T ss_pred HHHHHHHHHHHHHHHHHHH-cCCcc----CCCCCC---EEEEEeCC--HHHHHHHHHHHHHCCeeEeeeCCCCCCCCCce
Confidence 5788999999999999988 54322 123455 89988865 456788999999999999642 2468
Q ss_pred EEEeccCCCCHHHHHHHHHHHH
Q psy6547 234 IRLSPALNITEQELREGLDIII 255 (266)
Q Consensus 234 iR~~~~~~~t~~~i~~~~~~l~ 255 (266)
+|++++..++++++++++++|+
T Consensus 339 iRis~~~~~~~~~i~~~l~~l~ 360 (360)
T TIGR00858 339 LRLTLSAAHTPGDIDRLAEALK 360 (360)
T ss_pred EEEEEcCCCCHHHHHHHHHhhC
Confidence 9999999999999999999873
No 140
>PRK08361 aspartate aminotransferase; Provisional
Probab=99.89 E-value=2.4e-22 Score=176.10 Aligned_cols=238 Identities=15% Similarity=0.137 Sum_probs=166.7
Q ss_pred ccccCCCCCCceeecC-------CCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEecc
Q psy6547 10 YNEFGPHMPGYNIIPY-------NDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEV 82 (266)
Q Consensus 10 ~~~~~~~~~~v~~~~~-------~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~ 82 (266)
...+...+.+++.++. .|++++++.++ +++++++++.++|++|.+ ++.+.+++|.++|+++++++|+||+
T Consensus 131 ~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~--~~~~~v~i~~p~NPtG~~-~~~~~~~~l~~~~~~~~~~ii~De~ 207 (391)
T PRK08361 131 VEDAKIAEAKPIRIPLREENEFQPDPDELLELIT--KRTRMIVINYPNNPTGAT-LDKEVAKAIADIAEDYNIYILSDEP 207 (391)
T ss_pred HHHHHHcCCEEEEEecCCccCCCCCHHHHHHhcc--cccEEEEEeCCCCCCCcC-cCHHHHHHHHHHHHHcCeEEEEEcc
Confidence 3334456677777764 36899999884 457888877778888876 8999999999999999999999999
Q ss_pred ccCcCCcCc-cccccc--CCCCcCeeeeccccc-CCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHh
Q psy6547 83 QTGLGRTGK-LLAIHY--EDVRPDIVILGKALS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVIL 158 (266)
Q Consensus 83 ~~~~~~~g~-~~~~~~--~~~~~d~~~~sK~~~-~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~ 158 (266)
|.+|...+. ..+... ......+.++||.++ +| +|+||+++++++++.+.......+++.+.+.+.++..+++...
T Consensus 208 y~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G-lRiG~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~ 286 (391)
T PRK08361 208 YEHFLYEGAKHYPMIKYAPDNTILANSFSKTFAMTG-WRLGFVIAPEQVIKDMIKLHAYIIGNVASFVQIAGIEALRSKE 286 (391)
T ss_pred cccceeCCCCCCCHhhcCCCCEEEEecCchhcCCcH-hhhhhhccCHHHHHHHHHHHhhhccCCChHHHHHHHHHhcCCc
Confidence 977632221 111111 122333445999998 89 9999999999888776543334455667778888777775321
Q ss_pred h----ccHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHH-HCCceeccC----
Q psy6547 159 E----ENMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMK-DAGLVTKPI---- 229 (266)
Q Consensus 159 ~----~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~-~~gi~~~~~---- 229 (266)
. +...+.++++++.+.+.|++ ++. +....+..|. ++|+.++.. +.+..+++++|+ ++||.+.|+
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~L~~-~~~--~~~~~p~g~~---~~~~~l~~~-~~~~~~l~~~l~~~~gv~v~pg~~f~ 359 (391)
T PRK08361 287 SWKAVEEMRKEYNERRKLVLKRLKE-MPH--IKVFEPKGAF---YVFANIDET-GMSSEDFAEWLLEKARVVVIPGTAFG 359 (391)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHh-CCC--CeecCCCEEE---EEEEECCCC-CCCHHHHHHHHHHhCCEEEcCchhhC
Confidence 1 23455566677777777776 432 2221223466 788888631 346788998886 579999885
Q ss_pred --CCCEEEEeccCCCCHHHHHHHHHHHHHHHHH
Q psy6547 230 --SNNIIRLSPALNITEQELREGLDIIINTINT 260 (266)
Q Consensus 230 --~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~ 260 (266)
+.+++|++.. .+++++++++++|.+++++
T Consensus 360 ~~~~~~iRi~~~--~~~~~l~~al~~l~~~l~~ 390 (391)
T PRK08361 360 KAGEGYIRISYA--TSKEKLIEAMERMEKALEE 390 (391)
T ss_pred CCCCCEEEEEec--CCHHHHHHHHHHHHHHHhc
Confidence 2479999955 5788999999999998864
No 141
>PLN00143 tyrosine/nicotianamine aminotransferase; Provisional
Probab=99.89 E-value=6.7e-22 Score=174.13 Aligned_cols=239 Identities=16% Similarity=0.144 Sum_probs=156.5
Q ss_pred cCCCCCCceeecC-------CCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccC
Q psy6547 13 FGPHMPGYNIIPY-------NDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTG 85 (266)
Q Consensus 13 ~~~~~~~v~~~~~-------~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~ 85 (266)
+...+.+++.++. .|+++|+++++ +++++++++.++|++|.+ ++.+.+++|.++|++||++||+||+|.+
T Consensus 138 ~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~--~~~~~~~~~nP~NPTG~~-~s~~~~~~l~~~a~~~~~~ii~De~Y~~ 214 (409)
T PLN00143 138 AIFHHLEIRHFDLLPEKGWEVDLDAVEAIAD--ENTIAMVIINPGNPCGSV-YSYEHLNKIAETARKLGILVIADEVYGH 214 (409)
T ss_pred HHHcCCEEEEEeccCCCCCcCCHHHHHHhcc--cCCEEEEEECCCCCCCCc-cCHHHHHHHHHHHHHcCCeEEEEccccc
Confidence 3445677777753 27899998883 345555554457888887 8999999999999999999999999988
Q ss_pred cCCcCccc-ccccC---CCCcCeeeeccccc-CCchhhhhheec-H-Hhh------hccCCCCCCCCCCCcHHHHHHHHH
Q psy6547 86 LGRTGKLL-AIHYE---DVRPDIVILGKALS-GGLYPISAVLAD-D-EVM------GTLVPGTHGSTYGGNPLACKLAMT 152 (266)
Q Consensus 86 ~~~~g~~~-~~~~~---~~~~d~~~~sK~~~-~g~~~~g~~~~~-~-~~~------~~~~~~~~~~~~~~~~~~~~a~~~ 152 (266)
+...+..+ +.... .....+.+|||.++ +| +|+||++++ + .+. +.+........+ .+.+.+.++..
T Consensus 215 l~~~~~~~~~~~~~~~~~~vi~~~SfSK~f~~pG-lRvG~~v~~~p~~~~~~~~~~~~~~~~~~~~~~-~~~~~q~a~~~ 292 (409)
T PLN00143 215 IVFGSKPFVPMGLFASIVPVITLGSISKRWMIPG-WGLGWLVTCDPSGLLQICEIADSIKKALNPAPF-PPTFIQAAIPE 292 (409)
T ss_pred cccCCCCCcchhhhcccCcEEEEccchhhcCCCc-cceEEEEeeCchhhhhhHHHHHHHHHHHhccCC-CCchHHHHHHH
Confidence 74433321 11111 12234445999977 88 999999983 3 332 222211122222 46678888877
Q ss_pred HHHHHh---hccHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeC--cc-chHHHHHHHH-HHCCce
Q psy6547 153 ALDVIL---EENMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVS--AI-LEVYDVCIKM-KDAGLV 225 (266)
Q Consensus 153 ~l~~~~---~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~--~~-~~~~~~~~~l-~~~gi~ 225 (266)
+|+... -++..+++++..+.+.+.|++ ++...... .+..|+ |+|+.++.. .+ .+..+++.++ .++||.
T Consensus 293 ~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~-~~~~~~~~-~p~gg~---f~w~~l~~~~~~~~~~~~~~~~~ll~~~gV~ 367 (409)
T PLN00143 293 ILEKTTEDFFSKTINILRAALAFCYDKLKE-IPCIMCPQ-KAEGAF---FALVKLNLLLLEDIEDDMEFCLKLAKEESLI 367 (409)
T ss_pred HHhcChHHHHHHHHHHHHHHHHHHHHHHhc-CCCCCCCC-CCCeeE---EEEEecchhhcCCCCCHHHHHHHHHHhCCEE
Confidence 775311 123455666666666777766 43211111 234577 999998641 01 1455666555 688999
Q ss_pred eccC----CCCEEEEeccCCCCHHHHHHHHHHHHHHHHHHhh
Q psy6547 226 TKPI----SNNIIRLSPALNITEQELREGLDIIINTINTMAA 263 (266)
Q Consensus 226 ~~~~----~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~~~ 263 (266)
+.|+ ..+++|++.. .+++++++++++|.+++.++..
T Consensus 368 v~pg~~f~~~~~iRi~~~--~~~~~l~~al~rl~~~l~~~~~ 407 (409)
T PLN00143 368 ILPGVTVGLKNWLRITFA--VEQSSLEDGLGRLKSFCGRHAK 407 (409)
T ss_pred EeCccccCCCCeEEEEEc--CCHHHHHHHHHHHHHHHHHhcc
Confidence 9986 3579999954 6799999999999999987643
No 142
>PRK05664 threonine-phosphate decarboxylase; Reviewed
Probab=99.89 E-value=5.2e-22 Score=170.10 Aligned_cols=229 Identities=14% Similarity=0.056 Sum_probs=159.9
Q ss_pred CcCcccccCCCCCCceeecCCCHHHHHHHHhcCCCEEE-EEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEecccc
Q psy6547 6 DPTSYNEFGPHMPGYNIIPYNDVDALEAKLKSNPNICA-FMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQT 84 (266)
Q Consensus 6 ~~~~~~~~~~~~~~v~~~~~~d~~~l~~~l~~~~~~~~-i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~ 84 (266)
++.....+..++.+++.++. +++++.++ ++++ ++++| +|++|.+ ++.+.+++|+++|+++|++||+||+|.
T Consensus 96 y~~~~~~~~~~g~~~~~v~~---~~~~~~~~---~~~~v~l~nP-~NPTG~~-~s~~~l~~l~~~~~~~~~~iI~DE~y~ 167 (330)
T PRK05664 96 YAEHAHAWRRAGHQVRELDE---AEVEAALD---SLDVLVVVNP-NNPTGRR-FDPARLLAWHARLAARGGWLVVDEAFM 167 (330)
T ss_pred hHHHHHHHHHcCCeEEEech---hhHhhhhc---CCCEEEEeCC-cCCCCCc-cCHHHHHHHHHHHHhcCCEEEEECCcc
Confidence 33344556677888888864 45666663 2344 45555 5788887 899999999999999999999999997
Q ss_pred CcCCcCcccccccCCCCcCeeeeccccc-CCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHhh-ccH
Q psy6547 85 GLGRTGKLLAIHYEDVRPDIVILGKALS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILE-ENM 162 (266)
Q Consensus 85 ~~~~~g~~~~~~~~~~~~d~~~~sK~~~-~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~-~~~ 162 (266)
++.................+.+|||.++ +| +|+||+++++++.+.+... ..+++.+.+++.++..+|+.... +..
T Consensus 168 ~~~~~~s~~~~~~~~~vi~~~SfSK~~gl~G-lRiG~~v~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~L~~~~~~~~~ 244 (330)
T PRK05664 168 DNTPQHSLAACAHRPGLIVLRSFGKFFGLAG-ARLGFVLAEPALLRALAEL--LGPWTVSGPTRWLAQAALADTPWQRRQ 244 (330)
T ss_pred cCCCcccccccccCCCEEEEeeccccccCCC-cceEEEEeCHHHHHHHHHh--cCCCCCCHHHHHHHHHHHhChHHHHHH
Confidence 6632222112221122334555999999 99 9999999999998887753 23455677888888888864321 346
Q ss_pred HHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccC-CCCEEEEeccCC
Q psy6547 163 IENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPI-SNNIIRLSPALN 241 (266)
Q Consensus 163 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~-~~~~iR~~~~~~ 241 (266)
++.++++++.+.+.|++ .+ +.. ..+.++ ++|+..+ ++.++.+.|.++||.++.. ..+++|++..
T Consensus 245 ~~~~~~~r~~l~~~L~~-~~---~~~-~~~~~~---f~~~~~~-----~~~~~~~~l~~~gi~v~~f~~~~~iRis~~-- 309 (330)
T PRK05664 245 RERLLAASQRLAALLRR-HG---LTP-AGGCAL---FQWVRTE-----DAAALHEFLARRGILTRLFEQPASLRFGLP-- 309 (330)
T ss_pred HHHHHHHHHHHHHHHHH-CC---Ccc-cCCcce---EEEEecC-----CHHHHHHHHHHCCeEEEECCCCCeEEEECC--
Confidence 67777788888888887 42 211 122235 7777653 4688999999999999865 4579999944
Q ss_pred CCHHHHHHHHHHHHHHHHH
Q psy6547 242 ITEQELREGLDIIINTINT 260 (266)
Q Consensus 242 ~t~~~i~~~~~~l~~~~~~ 260 (266)
.++++++++.+.|++..++
T Consensus 310 ~~~~~~~~l~~al~~~~~~ 328 (330)
T PRK05664 310 ADEADWARLDQALLAYRKE 328 (330)
T ss_pred CCHHHHHHHHHHHHHHHhh
Confidence 3678888888888876554
No 143
>PF00155 Aminotran_1_2: Aminotransferase class I and II 1-aminocyclopropane-1-carboxylate synthase signature aspartate aminotransferase signature; InterPro: IPR004839 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into class I and class II. This entry includes proteins from both subfamilies.; GO: 0016769 transferase activity, transferring nitrogenous groups, 0030170 pyridoxal phosphate binding, 0009058 biosynthetic process; PDB: 3NRA_B 3P6K_B 3OP7_A 3ASB_A 3ASA_A 1W7M_A 3FVX_A 1W7N_A 3FVU_B 3FVS_A ....
Probab=99.89 E-value=7.4e-23 Score=177.63 Aligned_cols=234 Identities=19% Similarity=0.187 Sum_probs=167.1
Q ss_pred CcCcccccCCCCCCceeec-------CCCHHHHHHHHhcCC----CEEEEEEccccCCCCcccCChHHHHHHHHHHHhcC
Q psy6547 6 DPTSYNEFGPHMPGYNIIP-------YNDVDALEAKLKSNP----NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYN 74 (266)
Q Consensus 6 ~~~~~~~~~~~~~~v~~~~-------~~d~~~l~~~l~~~~----~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g 74 (266)
++.....+.-.+.+++.++ +.|+++|++.+++.+ ++++++++.++|++|.+ ++.+.+++|+++|++||
T Consensus 103 y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~~~~p~nPtG~~-~~~~~l~~l~~~~~~~~ 181 (363)
T PF00155_consen 103 YPSYIEAARLLGAEVIPVPLDSENDFHLDPEALEEALDELPSKGPRPKAVLICNPNNPTGSV-LSLEELRELAELAREYN 181 (363)
T ss_dssp STHHHHHHHHTTSEEEEEEEEETTTTEETHHHHHHHHHTSHTTTETEEEEEEESSBTTTTBB---HHHHHHHHHHHHHTT
T ss_pred cccccccccccCceeeeccccccccccccccccccccccccccccccceeeecccccccccc-cccccccchhhhhcccc
Confidence 3444444556677888888 669999999997631 46888888888999987 89999999999999999
Q ss_pred CEEEEeccccCcCCcCccc-c-cccCCC---CcCeeeeccccc-CCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHH
Q psy6547 75 VLFIADEVQTGLGRTGKLL-A-IHYEDV---RPDIVILGKALS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACK 148 (266)
Q Consensus 75 ~~li~De~~~~~~~~g~~~-~-~~~~~~---~~d~~~~sK~~~-~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (266)
++||+||+|.++......+ . ...... ...+.++||.++ +| +|+||+++++++.+.++.... .+..+...+.
T Consensus 182 ~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G-lRvG~i~~~~~~~~~l~~~~~--~~~~~~~~~~ 258 (363)
T PF00155_consen 182 IIIIVDEAYSDLIFGDPDFGPIRSLLDEDDNVIVVGSLSKSFGLPG-LRVGYIVAPPELIERLRRFQR--SGLSSSPMQA 258 (363)
T ss_dssp SEEEEEETTTTGBSSSSHTHHHHGHHTTTSTEEEEEESTTTTTSGG-GTEEEEEEEHHHHHHHHHHHH--HTTSSHHHHH
T ss_pred cceeeeeceeccccCCCccCcccccccccccceeeeeccccccccc-cccccccchhhhhhhhhhccc--cccccchhhH
Confidence 9999999998763322211 1 111111 234455999998 88 999999999998888775332 2223666666
Q ss_pred HHHHHHHHHhh-----ccHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHC-
Q psy6547 149 LAMTALDVILE-----ENMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDA- 222 (266)
Q Consensus 149 a~~~~l~~~~~-----~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~- 222 (266)
++..++..... ++..++++++.+.+.+.|++ . .+.......|. ++|+.+.. .++.+++++|+++
T Consensus 259 ~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~-~---~~~~~~~~~~~---~~~~~~~~---~~~~~l~~~L~~~~ 328 (363)
T PF00155_consen 259 AAAAALSDPELVEKWLEELRERLRENRDLLREALEE-I---GITVLPPEAGF---FLWVRLDP---NDAEELAQELLEEY 328 (363)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-T---TSEEEHHSBSS---EEEEEESH---HHHHHHHHHHHHHH
T ss_pred HHHHhhhcccccccccccchhhHHHHHHHHHHHHHH-h---hhheeeccCcc---EEEEEccc---chHHHHHHHHHHhC
Confidence 66666654432 34667777788888888877 3 23321122455 66666655 2678999999988
Q ss_pred CceeccC----CCCEEEEeccCCCCHHHHHHHHHHH
Q psy6547 223 GLVTKPI----SNNIIRLSPALNITEQELREGLDII 254 (266)
Q Consensus 223 gi~~~~~----~~~~iR~~~~~~~t~~~i~~~~~~l 254 (266)
||.+.|+ ..+++|+++ ...+++++++++++|
T Consensus 329 gi~v~pg~~~~~~~~iRi~~-a~~~~e~~~~~~~~l 363 (363)
T PF00155_consen 329 GILVRPGSYFGVPGYIRISL-ASHSEEDLEEALERL 363 (363)
T ss_dssp TEEEEEGGGGTSTTEEEEEG-GCSCHHHHHHHHHHH
T ss_pred CEEEEecCCCCCCCEEEEEe-ccCCHHHHHHHHhhC
Confidence 9999974 467999997 678999999999986
No 144
>PLN02656 tyrosine transaminase
Probab=99.89 E-value=4.6e-22 Score=175.21 Aligned_cols=238 Identities=16% Similarity=0.110 Sum_probs=160.7
Q ss_pred CCCCCceeecC-------CCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcC
Q psy6547 15 PHMPGYNIIPY-------NDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLG 87 (266)
Q Consensus 15 ~~~~~v~~~~~-------~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~ 87 (266)
..+.+++.++. .|+++++++++ +++++++++.++|++|.+ ++.+.+++|.++|++||++||+||+|.+|.
T Consensus 139 ~~g~~~~~i~~~~~~~~~~d~~~l~~~~~--~~~~~v~l~~P~NPtG~~-~s~~~~~~i~~~a~~~~~~ii~De~y~~~~ 215 (409)
T PLN02656 139 FRHLEVRYVDLLPEKGWEVDLDAVEALAD--QNTVALVIINPGNPCGNV-YSYQHLKKIAETAEKLKILVIADEVYGHLA 215 (409)
T ss_pred HcCCEEEEEeCCCcCCCCCCHHHHHHHhc--cCceEEEEECCCCCCCCC-CCHHHHHHHHHHHHHcCCEEEEehhhhhcc
Confidence 34666666653 26889998883 345666666668888877 899999999999999999999999998774
Q ss_pred CcCccc-cc---ccCCCCcCeeeeccccc-CCchhhhhheec--------HHhhhccCCCCCCCCCCCcHHHHHHHHHHH
Q psy6547 88 RTGKLL-AI---HYEDVRPDIVILGKALS-GGLYPISAVLAD--------DEVMGTLVPGTHGSTYGGNPLACKLAMTAL 154 (266)
Q Consensus 88 ~~g~~~-~~---~~~~~~~d~~~~sK~~~-~g~~~~g~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l 154 (266)
..+..+ +. ........+.+|||.++ +| +|+||++++ +++.+.+...... ..+.+.+.+.++..++
T Consensus 216 ~~~~~~~~~~~~~~~~~vi~~~SfSK~f~~pG-lRiG~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~q~a~~~~l 293 (409)
T PLN02656 216 FGSNPFVPMGVFGSIVPVLTLGSLSKRWIVPG-WRLGWFVTTDPSGSFRDPKIVERIKKYFDI-LGGPATFIQAAVPTIL 293 (409)
T ss_pred cCCCCcccHHHhcccCcEEEEcccchhccCcc-eeEEEEEEeCcccccccHHHHHHHHHHHhh-hcCCCHHHHHHHHHHH
Confidence 433221 11 11122334455999966 89 999999983 4666665532221 2346778888888888
Q ss_pred HHHh---hccHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeC--cc-chHHHH-HHHHHHCCceec
Q psy6547 155 DVIL---EENMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVS--AI-LEVYDV-CIKMKDAGLVTK 227 (266)
Q Consensus 155 ~~~~---~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~--~~-~~~~~~-~~~l~~~gi~~~ 227 (266)
+... -++..+.++++++.+.+.|+. ++...... .+..|+ ++|+.++.. .. .+..++ .+.|.++||.+.
T Consensus 294 ~~~~~~~~~~~~~~~~~~r~~~~~~L~~-~~~~~~~~-~p~gg~---~~w~~l~~~~~~~~~~~~~~~~~~l~~~gV~v~ 368 (409)
T PLN02656 294 EQTDESFFKKTINILKQSSDICCDRIKE-IPCITCPH-KPEGSM---AVMVKLNLSLLEDISDDIDFCFKLAREESVIIL 368 (409)
T ss_pred hcCcHHHHHHHHHHHHHHHHHHHHHHhh-CCCCcCCc-CCCeEE---EEEEecchhhcCCCCCHHHHHHHHHHhCCEEEe
Confidence 6311 123455667777777777776 43211111 234567 889888631 01 134454 456678999999
Q ss_pred cC----CCCEEEEeccCCCCHHHHHHHHHHHHHHHHHHhhc
Q psy6547 228 PI----SNNIIRLSPALNITEQELREGLDIIINTINTMAAK 264 (266)
Q Consensus 228 ~~----~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~~~~ 264 (266)
|+ ..+++|++.. .+++++++++++|.+++.+...+
T Consensus 369 pg~~fg~~~~iRi~~~--~~~e~l~eal~rl~~~~~~~~~~ 407 (409)
T PLN02656 369 PGTAVGLKNWLRITFA--ADPSSLEEALGRIKSFYLRHSKT 407 (409)
T ss_pred cchhcCCCCeEEEEeC--CCHHHHHHHHHHHHHHHHHhccc
Confidence 86 3579999955 58999999999999998876543
No 145
>PRK03158 histidinol-phosphate aminotransferase; Provisional
Probab=99.89 E-value=2.4e-22 Score=174.25 Aligned_cols=225 Identities=10% Similarity=0.053 Sum_probs=160.1
Q ss_pred cccCCCCCCceeecCC----CHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCc
Q psy6547 11 NEFGPHMPGYNIIPYN----DVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGL 86 (266)
Q Consensus 11 ~~~~~~~~~v~~~~~~----d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~ 86 (266)
......+.+++.++.+ |++++++.+ .+++++++++.++|++|.+ ++.+.+.++++.|+ +|+++|+||+|.+|
T Consensus 120 ~~~~~~g~~~~~~~~~~~~~d~~~l~~~~--~~~~~~v~i~~p~NPtG~~-~~~~~l~~~~~~~~-~~~~ii~De~y~~~ 195 (359)
T PRK03158 120 HNAIIEGAEVREVPLKDGGHDLEAMLKAI--DEQTKIVWICNPNNPTGTY-VNHEELLSFLESVP-SHVLVVLDEAYYEY 195 (359)
T ss_pred HHHHHcCCeEEEEecCCCCcCHHHHHHhc--CCCCCEEEEeCCCCCCCCC-CCHHHHHHHHHhCC-CCcEEEEECchHhh
Confidence 3345567778888753 688888877 3467888877778889987 67777777776663 69999999999776
Q ss_pred CCcCc-cc---ccccCCCCcCeeeeccccc-CCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHh-hc
Q psy6547 87 GRTGK-LL---AIHYEDVRPDIVILGKALS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVIL-EE 160 (266)
Q Consensus 87 ~~~g~-~~---~~~~~~~~~d~~~~sK~~~-~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~-~~ 160 (266)
...+. .. ..+..+....+.+|||.++ +| +|+||+++++++.+.+.... .++..+++++.++..+++... .+
T Consensus 196 ~~~~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G-lRiG~~v~~~~~~~~~~~~~--~~~~~~~~~q~~~~~~l~~~~~~~ 272 (359)
T PRK03158 196 VTAEDYPDTLPLLEKYENLIVLRTFSKAYGLAA-LRVGYGIASEELIEKLNIAR--PPFNTTRIAQYAAIAALEDQAFLK 272 (359)
T ss_pred cCCcccccHHHHHHhcCCEEEEEechHhhcCcc-hhhehhcCCHHHHHHHHHhc--CCCCCCHHHHHHHHHHhcCHHHHH
Confidence 33221 11 1122233344556999999 89 99999999999888776533 346788999999988885321 12
Q ss_pred cHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccC----CCCEEEE
Q psy6547 161 NMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPI----SNNIIRL 236 (266)
Q Consensus 161 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~----~~~~iR~ 236 (266)
...+.++++++.+.+.|++ .+ +.. .++.|. |+|+.++. +..++++.|.++||.+.++ ..+++|+
T Consensus 273 ~~~~~~~~~~~~~~~~l~~-~~---~~~-~~~~g~---~i~~~~~~----~~~~~~~~l~~~gv~v~~g~~f~~~~~iRi 340 (359)
T PRK03158 273 ECVEKNAEGLEQYYAFCKE-YG---LFY-YPSQTN---FIFVDTGR----DANELFEALLKKGYIVRSGAALGFPTGVRI 340 (359)
T ss_pred HHHHHHHHHHHHHHHHHHH-CC---Cee-CCCcCc---EEEEECCC----CHHHHHHHHHHCCeEEeeCCCCCCCCeEEE
Confidence 3444555666666666666 32 222 334577 88888743 5788999999999999985 3679999
Q ss_pred eccCCCCHHHHHHHHHHHHHH
Q psy6547 237 SPALNITEQELREGLDIIINT 257 (266)
Q Consensus 237 ~~~~~~t~~~i~~~~~~l~~~ 257 (266)
+ ..+.+++++++++|+++
T Consensus 341 ~---~~~~~~~~~l~~al~~~ 358 (359)
T PRK03158 341 T---IGLKEQNDKIIELLKEL 358 (359)
T ss_pred e---cCCHHHHHHHHHHHHHh
Confidence 9 33899999999999875
No 146
>PLN00145 tyrosine/nicotianamine aminotransferase; Provisional
Probab=99.89 E-value=1.2e-21 Score=173.43 Aligned_cols=237 Identities=16% Similarity=0.158 Sum_probs=158.7
Q ss_pred CCCCceeecC-------CCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCC
Q psy6547 16 HMPGYNIIPY-------NDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGR 88 (266)
Q Consensus 16 ~~~~v~~~~~-------~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~ 88 (266)
.+.+++.++. .|++++++++ ++++++++++.++|++|.+ ++.+.+++|+++|+++|++||+||+|.+|..
T Consensus 161 ~g~~~~~~~~~~~~~~~~d~~~l~~~~--~~~~~~i~i~~P~NPtG~v-~~~~~l~~i~~~a~~~~i~ii~De~Y~~~~~ 237 (430)
T PLN00145 161 SGLEVRHFDLLPERGWEVDLEGVEALA--DENTVAMVIINPNNPCGSV-YSYEHLAKIAETARKLGILVIADEVYDHLTF 237 (430)
T ss_pred cCCEEEEeeCCcccCCcCCHHHHHHHh--CcCceEEEEeCCCCCCCCC-CCHHHHHHHHHHHHHcCCEEEEeccchhhcc
Confidence 3455666552 2789999988 4456777766668888876 9999999999999999999999999987643
Q ss_pred cCccc-ccccC---CCCcCeeeeccccc-CCchhhhhhee--cHHhhh------ccCCCCCCCCCCCcHHHHHHHHHHHH
Q psy6547 89 TGKLL-AIHYE---DVRPDIVILGKALS-GGLYPISAVLA--DDEVMG------TLVPGTHGSTYGGNPLACKLAMTALD 155 (266)
Q Consensus 89 ~g~~~-~~~~~---~~~~d~~~~sK~~~-~g~~~~g~~~~--~~~~~~------~~~~~~~~~~~~~~~~~~~a~~~~l~ 155 (266)
.+..+ +.... .....+.+|||.++ +| ||+||+++ ++.+++ .+... .......+.+.+.++..+|+
T Consensus 238 ~~~~~~~~~~~~~~~~vi~~~S~SK~~~~pG-~RlG~iv~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~Q~a~~~~l~ 315 (430)
T PLN00145 238 GSKPFVPMGVFGEVAPVLTLGSISKRWVVPG-WRLGWIATCDPNGILKETKVVDSIRNY-LNISTDPATFVQGAIPQIIA 315 (430)
T ss_pred CCCCccchhhhcccCcEEEEeccccccCCCC-eeEEEEEEecchhhhhhhHHHHHHHHH-hcccCCCCHHHHHHHHHHHh
Confidence 33221 11111 12233444999976 89 99999987 333322 22221 12222456778888877776
Q ss_pred HHhh---ccHHHHHHHHHHHHHHHhhcccccCCCcc-cEEecCccceeeEEEEeeC--cc-chHHHHHHHHH-HCCceec
Q psy6547 156 VILE---ENMIENAYKMGEIFRSELSSPANKSKASF-KLSSGGLKKSINTLILSVS--AI-LEVYDVCIKMK-DAGLVTK 227 (266)
Q Consensus 156 ~~~~---~~~~~~~~~~~~~l~~~l~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~--~~-~~~~~~~~~l~-~~gi~~~ 227 (266)
.... ++..+.++++++.+.+.|++ +. .+.. ..+..|+ ++|+.++.. .+ .+..+++.+|+ ++||++.
T Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~L~~-~~--g~~~~~~P~ga~---y~~v~l~~~~~~~~~~~~~~~~~ll~~~gV~v~ 389 (430)
T PLN00145 316 NTKEEFFTKTLGLLKETADICYEKIKE-IK--CITCPHKPEGSM---FVMVKLDLSCLSGIKDDMDFCCKLAKEESVVVL 389 (430)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHhc-CC--CCCCCcCCCeee---EEEeccChhhcCCCCCHHHHHHHHHHhCCEEEe
Confidence 3111 23556667777777777776 32 2221 0244577 888887531 01 24567876665 6799999
Q ss_pred cC----CCCEEEEeccCCCCHHHHHHHHHHHHHHHHHHhhcc
Q psy6547 228 PI----SNNIIRLSPALNITEQELREGLDIIINTINTMAAKK 265 (266)
Q Consensus 228 ~~----~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~~~~~ 265 (266)
|+ ..+++|++.. .+++++++++++|.+++.++.+++
T Consensus 390 pG~~fg~~~~lRis~~--~~~~~l~~al~rl~~~~~~~~~~~ 429 (430)
T PLN00145 390 PGSALGMKNWLRITFA--IDPPSLEDGLERLKSFCLRHAKLA 429 (430)
T ss_pred CccccCCCCeEEEEeC--CCHHHHHHHHHHHHHHHHHhcccc
Confidence 85 3589999954 689999999999999998876554
No 147
>PRK07550 hypothetical protein; Provisional
Probab=99.89 E-value=5.5e-22 Score=173.61 Aligned_cols=233 Identities=15% Similarity=0.129 Sum_probs=165.6
Q ss_pred ccCCCCCCceeecCC-------CHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEecccc
Q psy6547 12 EFGPHMPGYNIIPYN-------DVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQT 84 (266)
Q Consensus 12 ~~~~~~~~v~~~~~~-------d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~ 84 (266)
.+.-.+.+++.++.+ |+++++++++ +++++++++.++|++|.+ ++.+.+++|.++|++||++||+||+|.
T Consensus 130 ~~~~~g~~~~~v~~~~~~~~~~~~~~l~~~~~--~~~~~v~~~~P~NPtG~~-~~~~~~~~i~~~~~~~~~~iI~Dd~y~ 206 (386)
T PRK07550 130 WLDMLGIRPVYLPCDEGPGLLPDPAAAEALIT--PRTRAIALVTPNNPTGVV-YPPELLHELYDLARRHGIALILDETYR 206 (386)
T ss_pred HHHhcCCEEEEEecCCCcCCCCCHHHHHHHhc--ccCcEEEEeCCCCCCCcc-cCHHHHHHHHHHHHHcCeEEEEeccch
Confidence 345567777777752 6788999994 356776666667888876 899999999999999999999999998
Q ss_pred CcCCcCc-cc-ccccC---CCCcCeeeeccccc-CCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHh
Q psy6547 85 GLGRTGK-LL-AIHYE---DVRPDIVILGKALS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVIL 158 (266)
Q Consensus 85 ~~~~~g~-~~-~~~~~---~~~~d~~~~sK~~~-~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~ 158 (266)
+|...+. .. ..... .....+.+|||.++ +| +|+||+++++++++.+.......+.+++.+++.++..+++.+.
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G-~RiG~i~~~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~ 285 (386)
T PRK07550 207 DFDSGGGAPHDLFADPDWDDTLVHLYSFSKSYALTG-HRVGAVVASPARIAEIEKFMDTVAICAPRIGQIAVAWGLPNLA 285 (386)
T ss_pred hhccCCCCCcchhhCCCccccEEEEecchhhccCcc-cceEeeecCHHHHHHHHHHHhhcccCCCcHHHHHHHHHhccHH
Confidence 7632221 11 11111 12344556999998 89 9999999999888777655445556667788888877776432
Q ss_pred h--ccHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHH-HCCceeccC------
Q psy6547 159 E--ENMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMK-DAGLVTKPI------ 229 (266)
Q Consensus 159 ~--~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~-~~gi~~~~~------ 229 (266)
. ++..++++++++.+.+.|.. .. .+.. ....|. ++|+.++.. +.++.+++++|. ++||.+.|+
T Consensus 286 ~~~~~~~~~~~~~~~~l~~~L~~-~~--~~~~-~~~g~~---~~~~~~~~~-~~~~~~l~~~l~~~~gv~v~pg~~f~~~ 357 (386)
T PRK07550 286 DWRAGNRAEIARRRDAFRAVFAR-LP--GWEL-LASGAY---FAYVRHPFP-DRPSREVARRLAKEAGILCLPGTMFGPG 357 (386)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh-CC--Ccee-CCCceE---EEEecCCCC-CCCHHHHHHHHHHhcCEEEeCchhhCCC
Confidence 2 23556677777777777776 32 2222 223456 788887641 346788999875 679999985
Q ss_pred CCCEEEEeccCCCCHHHHHHHHHHHHHH
Q psy6547 230 SNNIIRLSPALNITEQELREGLDIIINT 257 (266)
Q Consensus 230 ~~~~iR~~~~~~~t~~~i~~~~~~l~~~ 257 (266)
..+++|+++.. .+++++++++++|.++
T Consensus 358 ~~~~iRis~~~-~~~~~~~~~~~~l~~~ 384 (386)
T PRK07550 358 QEGYLRLAFAN-ADVAGIGELVERLRAF 384 (386)
T ss_pred CCCEEEEEeec-CCHHHHHHHHHHHHhh
Confidence 25799999753 4789999999999875
No 148
>TIGR01264 tyr_amTase_E tyrosine aminotransferase, eukaryotic. This model describes tyrosine aminotransferase as found in animals and Trypanosoma cruzi. It is the first enzyme of a pathway of tyrosine degradation via homogentisate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway. These plant sequences are excluded from the model seed and score between the trusted an noise cutoffs.
Probab=99.89 E-value=6.1e-22 Score=174.16 Aligned_cols=238 Identities=12% Similarity=0.104 Sum_probs=163.1
Q ss_pred cccCCCCCCceeecC-------CCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccc
Q psy6547 11 NEFGPHMPGYNIIPY-------NDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQ 83 (266)
Q Consensus 11 ~~~~~~~~~v~~~~~-------~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~ 83 (266)
..+...+.+++.++. .|++++++.++ +++++++++.++|++|.+ ++.+.+++|+++|+++|++||+||+|
T Consensus 134 ~~~~~~g~~v~~~~~~~~~~~~~d~~~l~~~~~--~~~~~v~~~~p~NPtG~~-~~~~~~~~l~~~a~~~~~~ii~De~y 210 (401)
T TIGR01264 134 TLAESMGIEVKLYNLLPDKSWEIDLKQLESLID--EKTAALIVNNPSNPCGSV-FSRQHLEEILAVAERQCLPIIADEIY 210 (401)
T ss_pred HHHHHcCCEEEEeecCCccCCCCCHHHHHHHhc--cCceEEEEcCCCCCCCCC-CCHHHHHHHHHHHHHCCCEEEEEhhh
Confidence 334555667766653 26889988883 356788877778888876 89999999999999999999999999
Q ss_pred cCcCCcCccc-cccc-CC--CCcCeeeeccccc-CCchhhhhheecH------HhhhccCCCCCCCCCCCcHHHHHHHHH
Q psy6547 84 TGLGRTGKLL-AIHY-ED--VRPDIVILGKALS-GGLYPISAVLADD------EVMGTLVPGTHGSTYGGNPLACKLAMT 152 (266)
Q Consensus 84 ~~~~~~g~~~-~~~~-~~--~~~d~~~~sK~~~-~g~~~~g~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~a~~~ 152 (266)
.+|...+..+ .+.. .. ....+.+|||.++ +| +|+||++++. ++.+.+..... ..++.+++.+.++..
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~~~G-lRiG~iv~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~q~a~~~ 288 (401)
T TIGR01264 211 GDMVFSGATFEPLASLSSTVPILSCGGLAKRWLVPG-WRLGWIIIHDRRGILRDIRDGLVKLSQ-RILGPCTIVQGALPS 288 (401)
T ss_pred hhhccCCcccccHHHcCCCCcEEEEccCcccCCCcc-ceEEEEEecCcchhHHHHHHHHHHHhh-ccCCCCcHHHHHHHH
Confidence 8874444211 1111 11 1223444999977 88 9999999863 33333332111 234567788888877
Q ss_pred HHHHHhh---ccHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeC---ccchHHHHHHHHH-HCCce
Q psy6547 153 ALDVILE---ENMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVS---AILEVYDVCIKMK-DAGLV 225 (266)
Q Consensus 153 ~l~~~~~---~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~---~~~~~~~~~~~l~-~~gi~ 225 (266)
+|+.... +...+.++++++.+.+.|++ ++ .+....+..|+ |+|+.++.. +..+..+++++|+ ++||.
T Consensus 289 ~l~~~~~~~l~~~~~~~~~~r~~l~~~L~~-~~--~~~~~~p~~g~---f~~~~~~~~~~~~~~~~~~~~~~l~~~~gI~ 362 (401)
T TIGR01264 289 ILLRTPQEYFDGTLSVLESNAMLCYGALAA-VP--GLRPVMPSGAM---YMMVGIEMEHFPEFKNDVEFTERLVAEQSVF 362 (401)
T ss_pred HHHhCcHHHHHHHHHHHHHHHHHHHHHHHh-CC--CCcccCCCeee---EEEEEecccccCCCCCHHHHHHHHHHhCCEE
Confidence 7753111 23556667777778788877 42 23221345688 999987531 1235678888886 78999
Q ss_pred eccC----CCCEEEEeccCCCCHHHHHHHHHHHHHHHHHH
Q psy6547 226 TKPI----SNNIIRLSPALNITEQELREGLDIIINTINTM 261 (266)
Q Consensus 226 ~~~~----~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~ 261 (266)
+.|+ ..+++|++.. .+++++++++++|.++++++
T Consensus 363 v~pg~~f~~~~~iRis~~--~~~~~l~~~l~rl~~~~~~~ 400 (401)
T TIGR01264 363 CLPGSCFEYPGFFRVVLT--VPVVMMEEACSRIQEFCERH 400 (401)
T ss_pred EeCchhcCCCCeEEEEEc--CCHHHHHHHHHHHHHHHhcc
Confidence 9975 3589999954 57899999999999988653
No 149
>TIGR03538 DapC_gpp succinyldiaminopimelate transaminase. This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).
Probab=99.89 E-value=3.3e-22 Score=175.40 Aligned_cols=227 Identities=14% Similarity=0.007 Sum_probs=158.6
Q ss_pred cCCCCCCceeecC-------CCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccC
Q psy6547 13 FGPHMPGYNIIPY-------NDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTG 85 (266)
Q Consensus 13 ~~~~~~~v~~~~~-------~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~ 85 (266)
+.-.+.+++.++. .|++++++.+. +++++++++.++|++|.+ ++.+.+++|.++|++||++||+||+|..
T Consensus 133 ~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~--~~~k~i~l~~p~NPtG~~-~s~~~~~~l~~~a~~~~~~ii~De~Y~~ 209 (393)
T TIGR03538 133 ALLAGAEPYFLNCTAENGFLPDFDAVPESVW--RRCQLLFVCSPGNPTGAV-LSLDTLKKLIELADQYGFIIASDECYSE 209 (393)
T ss_pred HHhcCCeEEEeeccccCCCCCCHHHHHHHHh--hcceEEEEeCCCCCcCcc-cCHHHHHHHHHHHHHCCEEEEECcchhh
Confidence 3345677777764 26788888873 367888887788888987 8999999999999999999999999977
Q ss_pred cCCcC--cccc----cccC-----CCCcCeeeeccccc-CCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHH
Q psy6547 86 LGRTG--KLLA----IHYE-----DVRPDIVILGKALS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTA 153 (266)
Q Consensus 86 ~~~~g--~~~~----~~~~-----~~~~d~~~~sK~~~-~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 153 (266)
+...+ .... .... .....+.+|||.++ +| +|+||+++++++++.+.......+++.+++.+.++..+
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~~~G-lRvG~~i~~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~ 288 (393)
T TIGR03538 210 LYFDEGNPPAGLLQAAAQLGRDDFRRCLVFHSLSKRSNLPG-LRSGFVAGDAEILKAFLRYRTYHGCAMPIPTQLASIAA 288 (393)
T ss_pred cccCCCCCCcCHHHhcccccccccccEEEEecchhhcCCcc-cceEEEecCHHHHHHHHHHHHhhccCcCHHHHHHHHHH
Confidence 64322 1111 1111 12234455999876 88 99999999998887776544444556677777777666
Q ss_pred HHHHh-hccHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHH-HCCceeccCC-
Q psy6547 154 LDVIL-EENMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMK-DAGLVTKPIS- 230 (266)
Q Consensus 154 l~~~~-~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~-~~gi~~~~~~- 230 (266)
+..-+ -+...+.++++.+.+.+.|++ . +....+..|. ++|+.++. +..+++++|+ ++||.+.|+.
T Consensus 289 l~~~~~~~~~~~~~~~~~~~~~~~L~~-~----~~~~~p~gg~---f~~~~~~~----~~~~~~~~l~~~~gV~v~pg~~ 356 (393)
T TIGR03538 289 WNDEQHVRENRALYREKFAAVLEILGQ-V----LDLELPDAGF---YLWPKVPG----DDEAFARALYEEENVTVLPGRF 356 (393)
T ss_pred hcChHHHHHHHHHHHHHHHHHHHHHHh-h----CcccCCCeeE---EEEEECCC----CHHHHHHHHHHHCCEEEeCCcc
Confidence 63211 123455566666667777665 2 1111344577 99999873 3577888876 6799997652
Q ss_pred -----------CCEEEEeccCCCCHHHHHHHHHHHHHH
Q psy6547 231 -----------NNIIRLSPALNITEQELREGLDIIINT 257 (266)
Q Consensus 231 -----------~~~iR~~~~~~~t~~~i~~~~~~l~~~ 257 (266)
.+++|++. ..+++++++++++|.++
T Consensus 357 f~~~~~~~~~~~~~~Ris~--~~~~~~l~~~l~~l~~~ 392 (393)
T TIGR03538 357 LAREAEGVNPGEGRVRIAL--VAPLEECVEAAERIRSF 392 (393)
T ss_pred ccccccCCCCCCCEEEEEe--cCCHHHHHHHHHHHHHh
Confidence 36899994 45789999999999875
No 150
>COG0079 HisC Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism]
Probab=99.89 E-value=4.4e-22 Score=170.64 Aligned_cols=225 Identities=14% Similarity=0.149 Sum_probs=172.1
Q ss_pred cCCCCCCceeecC----CCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCC
Q psy6547 13 FGPHMPGYNIIPY----NDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGR 88 (266)
Q Consensus 13 ~~~~~~~v~~~~~----~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~ 88 (266)
..-.+.+++.++. .|++++.+.++ ++++++++..++|++|.. ++.+.++++.+.+.+ +.+||+||+|.+|..
T Consensus 116 a~~~g~~~~~v~~~~~~~d~~~~~~~~~--~~~~lv~i~nPNNPTG~~-~~~~~l~~l~~~~~~-~~~vVvDEAY~eF~~ 191 (356)
T COG0079 116 AQLAGAEVVKVPLKEFRLDLDAILAAIR--DKTKLVFLCNPNNPTGTL-LPREELRALLEALPE-GGLVVIDEAYIEFSP 191 (356)
T ss_pred HHhcCCeEEEecccccccCHHHHHHhhh--cCCCEEEEeCCCCCCCCC-CCHHHHHHHHHhCCC-CcEEEEeCchhhcCC
Confidence 4566778888887 46788887773 368899988888889988 888999999998888 999999999998854
Q ss_pred cCcccccccCCCCcCeee---eccccc-CCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHhh-ccHH
Q psy6547 89 TGKLLAIHYEDVRPDIVI---LGKALS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILE-ENMI 163 (266)
Q Consensus 89 ~g~~~~~~~~~~~~d~~~---~sK~~~-~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~-~~~~ 163 (266)
.. ......-.+++++ |||.+| +| +|+||+++++++++.++. ....|..|.++++++.++++.-+. +...
T Consensus 192 --~~-~~~l~~~~~nlivlRTfSKa~gLAG-lRlGy~ia~~~~i~~l~~--vr~p~~v~~~a~~aa~aal~~~~~~~~~~ 265 (356)
T COG0079 192 --ES-SLELLKYPPNLIVLRTFSKAFGLAG-LRVGYAIANPELIAALNK--VRPPFNVSSPALAAAIAALRDADYLEESV 265 (356)
T ss_pred --ch-hhhhccCCCCEEEEEecHHhhhcch-hceeeccCCHHHHHHHHH--hcCCCCCCHHHHHHHHHHcccHHHHHHHH
Confidence 11 1111111232444 999999 99 999999999999999884 677888899999999988875422 3466
Q ss_pred HHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccCC-----CCEEEEec
Q psy6547 164 ENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPIS-----NNIIRLSP 238 (266)
Q Consensus 164 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~-----~~~iR~~~ 238 (266)
+++.+.++++.+.|+. ++... . .++.++ |+.+.++. .. +.++.++|.++||+++... .+++|++
T Consensus 266 ~~~~~~r~rl~~~l~~-~~~~~--v-~pS~aN---Fvlv~~~~--~~-~~~l~~~L~~~giivR~~~~~~~~~~~lRit- 334 (356)
T COG0079 266 ERIREERERLYAALKA-LGLFG--V-FPSQAN---FVLVRVPD--AE-AAALAEALLKKGILVRDCSSVGLLPGYLRIT- 334 (356)
T ss_pred HHHHHHHHHHHHHHHh-CCCCe--e-cCCCCc---EEEEECCC--cc-HHHHHHHHHHCCEEEEeCCCCCCCCCeEEEE-
Confidence 7777778888888877 54111 1 334466 99999987 44 6789999999999999763 3699999
Q ss_pred cCCCCHHHHHHHHHHHHHHHHH
Q psy6547 239 ALNITEQELREGLDIIINTINT 260 (266)
Q Consensus 239 ~~~~t~~~i~~~~~~l~~~~~~ 260 (266)
..|+++.+++++.|.++++.
T Consensus 335 --vgt~een~~ll~AL~~~~~~ 354 (356)
T COG0079 335 --VGTPEENDRLLAALREVLKG 354 (356)
T ss_pred --eCCHHHHHHHHHHHHHHHhc
Confidence 45888889999999998764
No 151
>PRK07568 aspartate aminotransferase; Provisional
Probab=99.89 E-value=7.2e-22 Score=173.48 Aligned_cols=235 Identities=17% Similarity=0.197 Sum_probs=164.8
Q ss_pred CCCCCceeecC--------CCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCc
Q psy6547 15 PHMPGYNIIPY--------NDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGL 86 (266)
Q Consensus 15 ~~~~~v~~~~~--------~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~ 86 (266)
-.+.+++.++. +++++|++++ .+++++++++.++|++|.+ ++.+.+++|.++|+++|+++|+||+|.+|
T Consensus 131 ~~g~~~~~v~~~~~~g~~~~~~~~l~~~~--~~~~~~v~i~~p~NPtG~~-~~~~~~~~i~~~~~~~~~~ii~De~y~~~ 207 (397)
T PRK07568 131 SAGVKIVPVTTKIEEGFHLPSKEEIEKLI--TPKTKAILISNPGNPTGVV-YTKEELEMLAEIAKKHDLFLISDEVYREF 207 (397)
T ss_pred HcCCEEEEeecCcccCCCCCCHHHHHHhc--CccceEEEEECCCCCCCcc-CCHHHHHHHHHHHHHCCcEEEEeccchhc
Confidence 44666677663 1458888888 3467888877677888876 89999999999999999999999999887
Q ss_pred CCcCccc-cc-ccCC---CCcCeeeeccccc-CCchhhhhheec-HHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHhh
Q psy6547 87 GRTGKLL-AI-HYED---VRPDIVILGKALS-GGLYPISAVLAD-DEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILE 159 (266)
Q Consensus 87 ~~~g~~~-~~-~~~~---~~~d~~~~sK~~~-~g~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~ 159 (266)
...+..+ +. ...+ ....+.++||.++ +| +|+||++++ +++.+.+..... ..++.+.+.+.++..+++..+.
T Consensus 208 ~~~~~~~~s~~~~~~~~~~~i~~~S~SK~~~~~G-~R~G~~~~~~~~~~~~~~~~~~-~~~~~s~~~q~~~~~~l~~~~~ 285 (397)
T PRK07568 208 VYDGLKYTSALSLEGLEDRVIIIDSVSKRYSACG-ARIGCLISKNKELIAAAMKLCQ-ARLSPPTLEQIGAAALLDTPES 285 (397)
T ss_pred ccCCCCccChhhcCCCcCCEEEEecchhhccCCC-cceEEEecCCHHHHHHHHHHhh-ccCCCCcHHHHHHHHHhhCCHH
Confidence 4444211 11 1112 1233345999999 79 999999984 667665543222 2456778888888777753211
Q ss_pred --ccHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHH------CCceeccC--
Q psy6547 160 --ENMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKD------AGLVTKPI-- 229 (266)
Q Consensus 160 --~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~------~gi~~~~~-- 229 (266)
+++.+.++++++.+.+.|++ +.. +....+..|. ++|+.++. . +..+++++|.+ +||.+.|+
T Consensus 286 ~~~~~~~~~~~~~~~l~~~L~~-~~~--~~~~~p~g~~---~~~~~l~~--~-~~~~~~~~l~~~~~~~~~gv~v~pg~~ 356 (397)
T PRK07568 286 YFDEVREEYKKRRDILYEELNK-IPG--VVCEKPKGAF---YIIAKLPV--D-DAEDFAKWLLTDFNYNGETVMVAPASG 356 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc-CCC--ceecCCCcce---EEEEecCC--C-CHHHHHHHHHhhcccccceEEEeCchH
Confidence 23566677788888888877 432 2221233456 77888875 2 56788888875 59999874
Q ss_pred -------CCCEEEEeccCCCCHHHHHHHHHHHHHHHHHHhhcc
Q psy6547 230 -------SNNIIRLSPALNITEQELREGLDIIINTINTMAAKK 265 (266)
Q Consensus 230 -------~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~~~~~ 265 (266)
+.+++|++.. .+++++++++++|.+++++..++|
T Consensus 357 f~~~~~~~~~~iRls~~--~~~~~~~~~~~~l~~~l~~~~~~~ 397 (397)
T PRK07568 357 FYATPGLGKNEIRIAYV--LNEEDLKRAMEILKEALEKYNKRK 397 (397)
T ss_pred hcCCCCCCCCeEEEEEe--CCHHHHHHHHHHHHHHHHHhhccC
Confidence 1369999954 678999999999999998877654
No 152
>PRK07337 aminotransferase; Validated
Probab=99.89 E-value=1e-21 Score=172.06 Aligned_cols=232 Identities=16% Similarity=0.157 Sum_probs=162.7
Q ss_pred cCCCCCCceeecCC-------CHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccC
Q psy6547 13 FGPHMPGYNIIPYN-------DVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTG 85 (266)
Q Consensus 13 ~~~~~~~v~~~~~~-------d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~ 85 (266)
+...+.+++.++.+ |++++++.+ .++++++++..++|++|.+ ++.+.+++|+++|+++|+++|+||+|.+
T Consensus 131 ~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~v~l~~p~NPtG~~-~~~~~~~~i~~~a~~~~~~ii~De~y~~ 207 (388)
T PRK07337 131 VAAAEGRPVLVPSGPAERFQLTAADVEAAW--GERTRGVLLASPSNPTGTS-IAPDELRRIVEAVRARGGFTIVDEIYQG 207 (388)
T ss_pred HHHcCCEEEEeecCCccCCcCCHHHHHhhc--CccceEEEEECCCCCCCcC-cCHHHHHHHHHHHHHCCCEEEEeccccc
Confidence 44456667777642 578888888 4467788877778888876 8999999999999999999999999987
Q ss_pred cCCcCcccccccCCCCcC---eeeeccccc-CCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHH--h-
Q psy6547 86 LGRTGKLLAIHYEDVRPD---IVILGKALS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVI--L- 158 (266)
Q Consensus 86 ~~~~g~~~~~~~~~~~~d---~~~~sK~~~-~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~--~- 158 (266)
+...+..... .....+ +.++||.++ +| +|+||+++++++.+.+.........+.+.+++.++..+++.- .
T Consensus 208 ~~~~~~~~~~--~~~~~~vi~~~S~SK~~~~~G-~RiG~~~~~~~l~~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~ 284 (388)
T PRK07337 208 LSYDAAPVSA--LSLGDDVITINSFSKYFNMTG-WRLGWLVVPEALVGTFEKLAQNLFICASALAQHAALACFEPDTLAI 284 (388)
T ss_pred cccCCCCcCh--hhccCCEEEEEechhhcCCch-hheeeeecCHHHHHHHHHHHHHhccCCChHHHHHHHHHhccCchHH
Confidence 7543322111 112233 345999997 88 999999999988887765444444456777887777766421 0
Q ss_pred hccHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeC---ccchHHHHHHHH-HHCCceeccC-----
Q psy6547 159 EENMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVS---AILEVYDVCIKM-KDAGLVTKPI----- 229 (266)
Q Consensus 159 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~---~~~~~~~~~~~l-~~~gi~~~~~----- 229 (266)
-.+..++++++++.+.+.|++ .+.... . .+..|+ ++|+.++.. +..+..+++.+| .++||.+.|+
T Consensus 285 ~~~~~~~~~~~r~~~~~~L~~-~~~~~~-~-~p~~g~---f~~~~~~~~~~~~~~~~~~~~~~ll~~~gv~v~pg~~f~~ 358 (388)
T PRK07337 285 YERRRAEFKRRRDFIVPALES-LGFKVP-V-MPDGAF---YVYADCRGVAHPAAGDSAALTQAMLHDAGVVLVPGRDFGP 358 (388)
T ss_pred HHHHHHHHHHHHHHHHHHHHh-cCCccc-c-CCCeeE---EEEEecccccCCCCCCHHHHHHHHHHhCCEEEeCchhhCC
Confidence 123456666777777777776 432211 1 234577 999998641 123577888775 5789999874
Q ss_pred --CCCEEEEeccCCCCHHHHHHHHHHHHHHH
Q psy6547 230 --SNNIIRLSPALNITEQELREGLDIIINTI 258 (266)
Q Consensus 230 --~~~~iR~~~~~~~t~~~i~~~~~~l~~~~ 258 (266)
..+++|++.. .+++.+++++++|.+++
T Consensus 359 ~~~~~~~Ri~~~--~~~~~l~~~l~rl~~~l 387 (388)
T PRK07337 359 HAPRDYIRLSYA--TSMSRLEEAVARLGKLF 387 (388)
T ss_pred CCCCCEEEEEec--CCHHHHHHHHHHHHHHh
Confidence 2479999965 47899999999998764
No 153
>TIGR03301 PhnW-AepZ 2-aminoethylphosphonate aminotransferase. This family includes a number of 2-aminoethylphosphonate aminotransferases, some of which are indicated to operate in the catabolism of 2-aminoethylphosphonate (AEP) and others which are involved in the biosynthesis of the same compound. The catabolic enzyme (PhnW, ) is known to use pyruvate:alanine as the transfer partner and is modeled by the equivalog-level alignment (TIGR02326). The PhnW family is apparently a branch of a larger tree including genes (AepZ) adjacent to others responsible for the biosynthesis of phosphonoacetaldehyde. The identity of the transfer partner is unknown for these enzymes and considering the reversed flux compared to PhnW, it may very well be different.
Probab=99.89 E-value=5e-21 Score=165.54 Aligned_cols=230 Identities=15% Similarity=0.177 Sum_probs=167.3
Q ss_pred CCCCceeecCC-----CHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcC
Q psy6547 16 HMPGYNIIPYN-----DVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTG 90 (266)
Q Consensus 16 ~~~~v~~~~~~-----d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g 90 (266)
++.+++.++.+ |++++++.++++++++.+++..+++++|.+. ++++|.++|++||+++|+|++++ ++.
T Consensus 96 ~g~~~~~i~~~~~~~~d~~~l~~~l~~~~~~~~v~~~~~~~~~G~~~----~~~~i~~l~~~~~~~livD~~~s-~g~-- 168 (355)
T TIGR03301 96 LGIPHTDLNFSEYEPPDLNRIEEALAADPDITHVATVHHETTTGILN----PLEAIAKVARSHGAVLIVDAMSS-FGA-- 168 (355)
T ss_pred cCCceEEEecCCCCCCCHHHHHHHHHhCCCceEEEEEecCCcccchh----HHHHHHHHHHHcCCEEEEEeccc-cCC--
Confidence 45667776643 7899999997656677777766777788876 79999999999999999999874 432
Q ss_pred cccccccCCCCcCeeeecccccCCchhhhhheecHHhhhccCCCC-----------------CCCCCCCcHHHHHHHHHH
Q psy6547 91 KLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGT-----------------HGSTYGGNPLACKLAMTA 153 (266)
Q Consensus 91 ~~~~~~~~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~a~~~~ 153 (266)
..+.+..++++..+.+++|+++|+ .++|++++++++++.+.... ....++.+...+.++..+
T Consensus 169 ~~~~~~~~~~d~~~~s~~K~l~~~-~G~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~a 247 (355)
T TIGR03301 169 IPIDIEELDVDALIASANKCLEGV-PGFGFVIARRDLLEASAGNARSLYLDLYDQWAYMEKTGKWRFTPPTHTVYAFAQA 247 (355)
T ss_pred cccchhhcCccEEEecCCcccccC-CceeEEEECHHHHHHhhCCCCCceeeHHHHHHHhhhcCCCCCCCcHHHHHHHHHH
Confidence 233444555555566699999765 45799999998887765210 113456777777888888
Q ss_pred HHHHhhc----cHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccC
Q psy6547 154 LDVILEE----NMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPI 229 (266)
Q Consensus 154 l~~~~~~----~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~ 229 (266)
++.+..+ +..++++++++++++.|++ ++...+.......+. ++++.++.....+..++.++|.++||.+.++
T Consensus 248 l~~~~~~g~~~~~~~~~~~~~~~~~~~L~~-~g~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~gi~i~~~ 323 (355)
T TIGR03301 248 LEELEAEGGVPARIARYRRNRELLVDGLRA-LGFQPLLPERWQSPI---IVSFLYPDDPDFDFDDFYQELKERGFVIYPG 323 (355)
T ss_pred HHHHHHcccHHHHHHHHHHHHHHHHHHHHH-cCCeeecCCCCCCCc---EEEEECCCCCcchHHHHHHHHHHCCEEEECC
Confidence 8877543 3566778889999999987 554322211123455 6778776421245678999999999999886
Q ss_pred C---CCEEEEeccCCCCHHHHHHHHHHHHHH
Q psy6547 230 S---NNIIRLSPALNITEQELREGLDIIINT 257 (266)
Q Consensus 230 ~---~~~iR~~~~~~~t~~~i~~~~~~l~~~ 257 (266)
. .+++|++++..+++++++++++.|+++
T Consensus 324 ~~~~~~~iRis~~~~~~~~~i~~~~~~l~~~ 354 (355)
T TIGR03301 324 KLTLADTFRIGTIGEIDAADIERLLEAIKDA 354 (355)
T ss_pred ccccccEEEEecCCCCCHHHHHHHHHHHHhh
Confidence 4 279999998888999999999999875
No 154
>PRK07865 N-succinyldiaminopimelate aminotransferase; Reviewed
Probab=99.89 E-value=3.3e-22 Score=173.71 Aligned_cols=227 Identities=15% Similarity=0.137 Sum_probs=156.2
Q ss_pred cCcccccCCCCCCceeecCCCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCc
Q psy6547 7 PTSYNEFGPHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGL 86 (266)
Q Consensus 7 ~~~~~~~~~~~~~v~~~~~~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~ 86 (266)
|........++.+++.+ +++++++ . .+++++++++++|++|.+ ++.+.+++|.++|+++|++||+||+|.++
T Consensus 122 ~~~~~~~~~~g~~~~~~--~~~~~l~----~-~~~~~v~~~~p~NPtG~~-~~~~~~~~i~~~a~~~~~~ii~De~y~~~ 193 (364)
T PRK07865 122 PTYEVGARLAGATVVRA--DSLTELG----P-QRPALIWLNSPSNPTGRV-LGVDHLRKVVAWARERGAVVASDECYLEL 193 (364)
T ss_pred ccHHHHHHhcCCEEEec--CChhhCC----c-ccceEEEEcCCCCCCCcc-CCHHHHHHHHHHHHHcCCEEEEecchhhh
Confidence 33333344455555555 3443332 1 467899988888888887 89999999999999999999999999876
Q ss_pred CCcCcccc-ccc------CCCCcCeeeeccccc-CCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHh
Q psy6547 87 GRTGKLLA-IHY------EDVRPDIVILGKALS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVIL 158 (266)
Q Consensus 87 ~~~g~~~~-~~~------~~~~~d~~~~sK~~~-~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~ 158 (266)
...+.... +.. ......+.+|||.++ +| +|+||+++++++.+.+........++.+.+.+.++..+++..+
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G-lRiG~i~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~ 272 (364)
T PRK07865 194 GWDAEPVSILDPRVCGGDHTGLLAVHSLSKQSNLAG-YRAGFVAGDPALVAELLEVRKHAGMMVPAPVQAAMVAALGDDA 272 (364)
T ss_pred ccCCCCCccccccccCCccceEEEEeechhccCCCc-eeeEEEecCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCHH
Confidence 44332211 111 112234455999996 89 9999999999988877654444555677788887777765311
Q ss_pred h-ccHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccC------CC
Q psy6547 159 E-ENMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPI------SN 231 (266)
Q Consensus 159 ~-~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~------~~ 231 (266)
. +..++.++++++.+.+.|++ .+ +.......|. ++|+.+.. +..+++++|.++||.+.|+ ..
T Consensus 273 ~~~~~~~~~~~~~~~l~~~L~~-~g---~~~~~~~~~~---~~~~~~~~----~~~~~~~~l~~~gv~v~pg~~f~~~~~ 341 (364)
T PRK07865 273 HVREQRERYARRRAVLRPALEA-AG---FRVDHSEAGL---YLWATRGE----DCWDTVAWLAERGILVAPGDFYGPAGA 341 (364)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-cC---CcccCCCccE---EEEEeCCC----CHHHHHHHHHHCCEEEeCccccCcCCC
Confidence 1 23556667777777777776 33 2221223455 67777643 4677889999999999874 25
Q ss_pred CEEEEeccCCCCHHHHHHHHHHHH
Q psy6547 232 NIIRLSPALNITEQELREGLDIII 255 (266)
Q Consensus 232 ~~iR~~~~~~~t~~~i~~~~~~l~ 255 (266)
+++|+++. .+++++++++++|+
T Consensus 342 ~~iRi~~~--~~~~~~~~~~~~l~ 363 (364)
T PRK07865 342 QHVRVALT--ATDERIAAAVERLA 363 (364)
T ss_pred CEEEEEec--CCHHHHHHHHHHhh
Confidence 79999954 47899999999885
No 155
>PLN02450 1-aminocyclopropane-1-carboxylate synthase
Probab=99.89 E-value=1.6e-21 Score=174.11 Aligned_cols=246 Identities=16% Similarity=0.109 Sum_probs=166.6
Q ss_pred CCcCcccccC-CCCCCceeecCC-------CHHHHHHHHhc----CCCEEEEEEccccCCCCcccCChHHHHHHHHHHHh
Q psy6547 5 TDPTSYNEFG-PHMPGYNIIPYN-------DVDALEAKLKS----NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQ 72 (266)
Q Consensus 5 ~~~~~~~~~~-~~~~~v~~~~~~-------d~~~l~~~l~~----~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~ 72 (266)
.+|.+...+. -.+.+++.++.. |++++++.+++ ..++++++++.++||+|.+ ++.+.+++|.++|++
T Consensus 144 ~Y~~~~~~~~~~~g~~~v~v~~~~~~~~~~~~~~le~~~~~~~~~~~~~k~v~l~nP~NPTG~~-~s~e~l~~ll~~a~~ 222 (468)
T PLN02450 144 YYPGFDRDLKWRTGVEIVPIHCSSSNGFQITESALEEAYQQAQKLNLKVKGVLITNPSNPLGTT-TTRTELNLLVDFITA 222 (468)
T ss_pred CCCchHHHHhhcCCcEEEEEecCCccCCcCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCCcc-cCHHHHHHHHHHHHH
Confidence 3444445555 367778887742 56888888754 2368888877778888987 999999999999999
Q ss_pred cCCEEEEeccccCcCCcCccc-c-ccc-----------CCCCcCeeeeccccc-CCchhhhhheecHH-hhhccCCCCCC
Q psy6547 73 YNVLFIADEVQTGLGRTGKLL-A-IHY-----------EDVRPDIVILGKALS-GGLYPISAVLADDE-VMGTLVPGTHG 137 (266)
Q Consensus 73 ~g~~li~De~~~~~~~~g~~~-~-~~~-----------~~~~~d~~~~sK~~~-~g~~~~g~~~~~~~-~~~~~~~~~~~ 137 (266)
||++||+||+|.++...+..+ + ... .+....+.+|||.++ +| +|+||++++.+ +.+.+....
T Consensus 223 ~~~~iI~DE~Y~~~~f~~~~~~s~l~~~~~~~~~~~~~~~~vi~l~S~SK~~~l~G-lRiG~li~~~~~l~~~~~~~~-- 299 (468)
T PLN02450 223 KNIHLISDEIYSGTVFDSPGFVSVMEVLKDRKLENTDVSNRVHIVYSLSKDLGLPG-FRVGAIYSNDEMVVSAATKMS-- 299 (468)
T ss_pred CCcEEEEEccccccccCCCCcccHHHHhhhcccccCCCCCcEEEEEeccccCCCCC-ccEEEEEECCHHHHHHHHHHh--
Confidence 999999999998753333222 1 111 122334555999998 99 99999999754 445444221
Q ss_pred CCCCCcHHHHHHHHHHHHHHh-----hccHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCc---c
Q psy6547 138 STYGGNPLACKLAMTALDVIL-----EENMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSA---I 209 (266)
Q Consensus 138 ~~~~~~~~~~~a~~~~l~~~~-----~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~---~ 209 (266)
.....+.+++.++..+|+... -++.++++++.++.+.+.|++ .+ +.......|+ |+|+.++..- .
T Consensus 300 ~~~~~s~~~Q~a~~~~L~~~~~~~~~l~~~~~~l~~rr~~l~~~L~~-~g---i~~~~~~~g~---flwi~l~~~~~~~~ 372 (468)
T PLN02450 300 SFGLVSSQTQYLLSALLSDKKFTKNYLEENQKRLKQRQKKLVSGLEA-AG---IKCLKSNAGL---FCWVDMRHLLKSNT 372 (468)
T ss_pred hcCCCCHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHHH-cC---CcccCCCceE---EEEEEchHhcCcCC
Confidence 122357778888877775321 123456666677777777776 43 2221334677 8999886410 1
Q ss_pred -chHHHHHHHHH-HCCceeccCC------CCEEEEeccCCCCHHHHHHHHHHHHHHHHHHh
Q psy6547 210 -LEVYDVCIKMK-DAGLVTKPIS------NNIIRLSPALNITEQELREGLDIIINTINTMA 262 (266)
Q Consensus 210 -~~~~~~~~~l~-~~gi~~~~~~------~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~~ 262 (266)
.+..++.++|+ ++||.+.|+. .+++|++... .+++++++++++|.+++.+..
T Consensus 373 ~~~~~~l~~~ll~~~gV~v~PG~~f~~~~~g~~Rl~f~~-~~~~~l~~~l~ri~~~l~~~~ 432 (468)
T PLN02450 373 FEAEMELWKKIVYEVKLNISPGSSCHCTEPGWFRVCFAN-MSEETLDLAMKRLKSFVESDS 432 (468)
T ss_pred chHHHHHHHHHHHhCCEEEeCccccCCCCCCEEEEEecC-CCHHHHHHHHHHHHHHHHhcc
Confidence 12345777776 5799999862 5799999443 478999999999999987755
No 156
>KOG0634|consensus
Probab=99.88 E-value=4.6e-21 Score=160.89 Aligned_cols=251 Identities=16% Similarity=0.148 Sum_probs=185.0
Q ss_pred CcCcccccCCCCCCceeecCC----CHHHHHHHHhcC-------CCEEEEEEccc-cCCCCcccCChHHHHHHHHHHHhc
Q psy6547 6 DPTSYNEFGPHMPGYNIIPYN----DVDALEAKLKSN-------PNICAFMVEPI-QGEAGAVVPDDGYLKKVRALCSQY 73 (266)
Q Consensus 6 ~~~~~~~~~~~~~~v~~~~~~----d~~~l~~~l~~~-------~~~~~i~~~~~-~~~~g~~~~~~~~l~~l~~l~~~~ 73 (266)
+|..-+...|++.+++.|+.+ +++.|++.+... ++..++++-|. +|++|.. ++.+..++|.++|++|
T Consensus 158 y~~AL~s~~a~gv~~ipv~md~~Gi~pE~l~~il~~w~~~~~k~~~p~vlYTIPTgqNPTG~t-ls~errk~iy~LArKy 236 (472)
T KOG0634|consen 158 YPSALQSMEALGVKIIPVKMDQDGIDPESLEEILSNWKPGSYKKPKPHVLYTIPTGQNPTGNT-LSLERRKKIYQLARKY 236 (472)
T ss_pred chHHHHhccccCceEEeccccCCCCCHHHHHHHHhcCCcccccCCCCeEEEeCcCCCCCCCCc-cCHHHHHHHHHHHHHc
Confidence 445556678889889988876 699999998652 34788898885 6777776 9999999999999999
Q ss_pred CCEEEEeccccCcCCc---C--------------------cccccccCCCCcCeeeecccccCCchhhhhheecHHhhhc
Q psy6547 74 NVLFIADEVQTGLGRT---G--------------------KLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGT 130 (266)
Q Consensus 74 g~~li~De~~~~~~~~---g--------------------~~~~~~~~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~ 130 (266)
+++||+||.|.-+... + .+...+..|....+-+|||-+++| .|+||+.++..+++.
T Consensus 237 DfLIVeDdpYy~Lq~~~y~~~~~~~~p~~s~~~f~k~l~~sflslDtdGrVIr~dSFSKiiaPG-lRlG~it~~~~~l~r 315 (472)
T KOG0634|consen 237 DFLIVEDDPYYFLQMNTYNPSLELESPAHSSSMFLKSLVPSFLSLDTDGRVIRNDSFSKIIAPG-LRLGWITGNSLFLKR 315 (472)
T ss_pred CEEEEecCccceeeccccCCCccccCccccHHHHHHhhcCCcccccccccEEeccchhhhhcCc-ceeEEeecCHHHHHH
Confidence 9999999999432111 0 011123334455566699999999 999999999988877
Q ss_pred cCCCCCCCCCCCcHHHHHHHHHHHHHHhhccHHHHHHH-------HHHHHHHHhhcccccCCCcccEEecCccceeeEEE
Q psy6547 131 LVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYK-------MGEIFRSELSSPANKSKASFKLSSGGLKKSINTLI 203 (266)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~-------~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~ 203 (266)
........+.++|.+.+....+.|+.+..+++.+.+.+ ++..+.+.+.+++........++..|+ |+|+.
T Consensus 316 il~~ae~~t~~pSg~sq~iv~a~l~~wgqeG~~~wi~~l~~~Yt~Rrn~~l~Al~kylp~~~~~~~~P~aGm---Fiwv~ 392 (472)
T KOG0634|consen 316 ILDLAEVATSGPSGFSQGIVYAMLKRWGQEGFLRWIQHLRSSYTERRNALLSALDKYLPKSVCEYHPPKAGM---FIWVE 392 (472)
T ss_pred HhhhcceeecCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeeEEecCCcce---EEEEE
Confidence 76666677777888999999999998888766555554 444455555554544323332456799 99999
Q ss_pred Ee-------eCccch--HHHHHHHHHHCCceeccC----------CCC-EEEEeccCCCCHHHHHHHHHHHHHHHHHHhh
Q psy6547 204 LS-------VSAILE--VYDVCIKMKDAGLVTKPI----------SNN-IIRLSPALNITEQELREGLDIIINTINTMAA 263 (266)
Q Consensus 204 ~~-------~~~~~~--~~~~~~~l~~~gi~~~~~----------~~~-~iR~~~~~~~t~~~i~~~~~~l~~~~~~~~~ 263 (266)
++ + ..+ .+.+...+.++||.+.++ ... ++|++.++. +.++++++++|+..++++...
T Consensus 393 i~~~~~~~~~--~i~q~~e~i~~~~vk~gV~~v~G~~F~v~p~~s~~kiffRls~a~a-~~e~l~~g~~rf~~~ike~f~ 469 (472)
T KOG0634|consen 393 IPYINFDTKK--SINQIEEIIFIKAVKNGVKLVCGSWFMVDPESSWSKIFFRLSIAFA-EPEKLDEGIERFGSVIKEHFI 469 (472)
T ss_pred eccccccccc--chHHHHHHHHHHHHHCCeEEecCceeEEcCccCCCcceEEEEeecC-CHHHHHHHHHHHHHHHHHHhh
Confidence 97 2 222 334556677999998765 123 899998876 778999999999999998754
Q ss_pred c
Q psy6547 264 K 264 (266)
Q Consensus 264 ~ 264 (266)
.
T Consensus 470 ~ 470 (472)
T KOG0634|consen 470 T 470 (472)
T ss_pred c
Confidence 3
No 157
>TIGR01140 L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxylase. This family contains pyridoxal phosphate-binding class II aminotransferases (see PFAM:PF00222) closely related to, yet distinct from, histidinol-phosphate aminotransferase (HisC). It is found in cobalamin biosynthesis operons in Salmonella typhimurium and Bacillus halodurans (each of which also has HisC) and has been shown to have L-threonine-O-3-phosphate decarboxylase activity in Salmonella. Although the gene symbol cobD was assigned in Salmonella, cobD in other contexts refers to a different cobalamin biosynthesis enzyme, modeled by pfam03186 and called cbiB in Salmonella.
Probab=99.88 E-value=9.1e-22 Score=168.65 Aligned_cols=218 Identities=12% Similarity=0.065 Sum_probs=154.4
Q ss_pred cCCCCCCceeecCCCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCcc
Q psy6547 13 FGPHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKL 92 (266)
Q Consensus 13 ~~~~~~~v~~~~~~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~ 92 (266)
+...+.+++.++ |++++++.++ ++++++++.++|++|.+ ++.+.+++|+++|+++|+++|+||+|.++......
T Consensus 103 ~~~~g~~~~~~~--d~~~l~~~~~---~~~~v~i~~p~NPtG~~-~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~ 176 (330)
T TIGR01140 103 WRAAGHEVVELP--DLDRLPAALE---ELDVLVLCNPNNPTGRL-IPPETLLALAARLRARGGWLVVDEAFIDFTPDASL 176 (330)
T ss_pred HHHcCCEEEEeC--CHHHHHhhcc---cCCEEEEeCCCCCCCCC-CCHHHHHHHHHHhHhcCCEEEEECcccccCCccch
Confidence 455566677766 8999999883 34566666668888887 89999999999999999999999999877432111
Q ss_pred ccc-ccCCCCcCeeeeccccc-CCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHhh-ccHHHHHHHH
Q psy6547 93 LAI-HYEDVRPDIVILGKALS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILE-ENMIENAYKM 169 (266)
Q Consensus 93 ~~~-~~~~~~~d~~~~sK~~~-~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~-~~~~~~~~~~ 169 (266)
... +..+....+.++||.++ +| +|+||+++++++++.+... ...++.+++++.++...++..+- +..+++++++
T Consensus 177 ~~~~~~~~~~i~~~S~SK~~g~~G-~R~G~i~~~~~~~~~l~~~--~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~ 253 (330)
T TIGR01140 177 APQAARFPGLVVLRSLTKFFGLAG-LRLGFVVAHPALLARLREA--LGPWTVNGPARAAGRAALADTAWQAATRARLAAE 253 (330)
T ss_pred hhHhccCCCEEEEEecchhhcCch-hhhhheeCCHHHHHHHHhc--CCCCCchHHHHHHHHHHHhchHHHHHHHHHHHHH
Confidence 111 11122233346999999 89 9999999999988887753 33566777888877777753211 2356777778
Q ss_pred HHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccC------CCCEEEEeccCCCC
Q psy6547 170 GEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPI------SNNIIRLSPALNIT 243 (266)
Q Consensus 170 ~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~------~~~~iR~~~~~~~t 243 (266)
++.+.+.|++ ++. +.. ..+.|+ |+|+.+++ ..+++++|+++||.+.|+ +.+++|++++ ..
T Consensus 254 ~~~l~~~L~~-~~~--~~~-~~~~~~---f~~~~~~~-----~~~l~~~l~~~gi~v~pg~~f~~~~~~~iRi~~~--~~ 319 (330)
T TIGR01140 254 RARLAALLAR-LGG--LEV-VGGTAL---FLLVRTPD-----AAALHEALARRGILIRDFDNFPGLDPRYLRFALP--TD 319 (330)
T ss_pred HHHHHHHHHh-CCC--ceE-CCCCCe---EEEEEcCC-----HHHHHHHHHHCCEEEEECCCCCCCCCCEEEEEec--CH
Confidence 8888888877 442 222 234567 88887654 568999999999999985 2368999943 44
Q ss_pred HHHHHHHHHHH
Q psy6547 244 EQELREGLDII 254 (266)
Q Consensus 244 ~~~i~~~~~~l 254 (266)
.++ ++++.+|
T Consensus 320 ~~~-~~~~~~l 329 (330)
T TIGR01140 320 EEN-DRLEEAL 329 (330)
T ss_pred HHH-HHHHHhh
Confidence 444 7777665
No 158
>PRK06959 putative threonine-phosphate decarboxylase; Provisional
Probab=99.88 E-value=1.9e-21 Score=167.11 Aligned_cols=225 Identities=17% Similarity=0.110 Sum_probs=157.8
Q ss_pred cccCCCCCCceeecCCCHHHHHHHHhcCCCE-EEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCc
Q psy6547 11 NEFGPHMPGYNIIPYNDVDALEAKLKSNPNI-CAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRT 89 (266)
Q Consensus 11 ~~~~~~~~~v~~~~~~d~~~l~~~l~~~~~~-~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~ 89 (266)
..+...+.+++.++.++ +.+.+ .+ .+++++| +|++|.+ ++.+.++++++.|.++++++|+||+|.+|...
T Consensus 108 ~~~~~~g~~~~~v~~~~-~~~~~------~~~~v~l~nP-nNPTG~~-~s~~~l~~l~~~~~~~~~~vI~DEay~~~~~~ 178 (339)
T PRK06959 108 PAFARHGHRVVPLDEAA-DTLPA------ALTHLIVVNP-NNPTAER-LPAARLLRWHAQLAARGGTLIVDEAFADTLPA 178 (339)
T ss_pred HHHHHCCCEEEeecccc-hhccc------cCCEEEEeCC-CCCCCCC-CCHHHHHHHHHHHHHcCCEEEEECCCccCCCc
Confidence 34556677777776543 22211 23 3444555 6888877 89999999999999999999999999877422
Q ss_pred CcccccccCCCCcCeeeeccccc-CCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHh-hccHHHHHH
Q psy6547 90 GKLLAIHYEDVRPDIVILGKALS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVIL-EENMIENAY 167 (266)
Q Consensus 90 g~~~~~~~~~~~~d~~~~sK~~~-~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~-~~~~~~~~~ 167 (266)
..............+-+|||.++ +| +|+||+++++++++.+... ...++.+.+++.++.++|+... .+...++++
T Consensus 179 ~s~~~~~~~~~vi~l~SfSK~~gl~G-lRiGy~v~~~~li~~l~~~--~~~~~vs~~~q~a~~~~L~~~~~~~~~~~~~~ 255 (339)
T PRK06959 179 ASLAAHTDRPGLVVLRSVGKFFGLAG-VRAGFVLAAPALLAALRDA--LGAWTVSGPARHAVRAAFADAAWQAAMRERLA 255 (339)
T ss_pred ccchhccCCCCEEEEecChhhcCCcc-hheEEEecCHHHHHHHHHh--cCCCCCcHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 11111111111233445999999 99 9999999999999888753 3356678888888888885322 134567777
Q ss_pred HHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccC-CCCEEEEeccCCCCHHH
Q psy6547 168 KMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPI-SNNIIRLSPALNITEQE 246 (266)
Q Consensus 168 ~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~-~~~~iR~~~~~~~t~~~ 246 (266)
+.++++.+.|++ ++ +. ....++ |+|+.++ ++.++.+.|.++||.++.. ..+++|++ +..++++
T Consensus 256 ~~r~~l~~~L~~-~g---~~--~~~~~~---f~~~~~~-----~~~~l~~~l~~~GI~vr~~~~~~~lRis--i~~~~~e 319 (339)
T PRK06959 256 ADGARLAALLRA-HG---FA--VHATPL---FSWTDDP-----RAAALHAALARRGIWTRYFAPPPSVRFG--LPADEAE 319 (339)
T ss_pred HHHHHHHHHHHH-CC---CC--ccCcce---EEEEeCC-----CHHHHHHHHHhCCeEEEECCCCCeEEEE--CCCCHHH
Confidence 788888888887 43 22 122356 7788764 3578999999999999865 34799999 4358889
Q ss_pred HHHHHHHHHHHHHHHhh
Q psy6547 247 LREGLDIIINTINTMAA 263 (266)
Q Consensus 247 i~~~~~~l~~~~~~~~~ 263 (266)
++++++.|+++++.+..
T Consensus 320 ~~~l~~al~~~~~~~~~ 336 (339)
T PRK06959 320 WQRLEDALAECVPTLAA 336 (339)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 99999999998877643
No 159
>PRK09440 avtA valine--pyruvate transaminase; Provisional
Probab=99.88 E-value=1.3e-21 Score=172.93 Aligned_cols=225 Identities=16% Similarity=0.133 Sum_probs=154.9
Q ss_pred CHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCcccccc--cCCCCcCe
Q psy6547 27 DVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIH--YEDVRPDI 104 (266)
Q Consensus 27 d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~~~~--~~~~~~d~ 104 (266)
|+++|+ + +++++++++++++|++|.+ ++.+.+++|.++|++||++||+||+|..+.......... ..+....+
T Consensus 170 d~~~l~--~--~~~~~~i~l~~P~NPTG~~-~s~~~~~~l~~~a~~~~~~iI~De~Y~~~~~~~~~~~~~~~~~~~vI~~ 244 (416)
T PRK09440 170 DFEHLH--I--DEDTGAICVSRPTNPTGNV-LTDEELEKLDALARQHNIPLLIDNAYGPPFPGIIFSEATPLWNPNIILC 244 (416)
T ss_pred CHHHcc--c--CCCceEEEEecCCCCCCcc-CCHHHHHHHHHHHHHcCCcEEEeCCccccCCCcchhhcCccccCCeEEE
Confidence 677776 3 3467888877778889987 899999999999999999999999996431110100110 12233445
Q ss_pred eeecccccCCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHhh-----ccHHHHHHHHHHHHHHHhhc
Q psy6547 105 VILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILE-----ENMIENAYKMGEIFRSELSS 179 (266)
Q Consensus 105 ~~~sK~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~-----~~~~~~~~~~~~~l~~~l~~ 179 (266)
.+|||...+| +|+||+++++++++.+.........+.+.+.+.++..+++.-.- +.+...++++.+.+++.|.+
T Consensus 245 ~SfSK~~~pG-lRiG~~i~~~~l~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~L~~ 323 (416)
T PRK09440 245 MSLSKLGLPG-VRCGIVIADEEIIEALSNMNGIISLAPGRLGPAIAAEMIESGDLLRLSETVIRPFYRQKVQLAIALLRR 323 (416)
T ss_pred ecccccCCCc-ceEEEEeCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5699975589 99999999999888877544445566788888888877753111 11334445555666666665
Q ss_pred ccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccCC-------------CCEEEEeccCCCCHHH
Q psy6547 180 PANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPIS-------------NNIIRLSPALNITEQE 246 (266)
Q Consensus 180 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~-------------~~~iR~~~~~~~t~~~ 246 (266)
.+....+....+..|. ++|+.++.. ..+..++++.|.++||.++|+. .+++|++.. .++++
T Consensus 324 ~l~~~~~~~~~p~gg~---fiw~~~~~~-~~~~~~~~~~l~~~gV~v~pg~~F~~~~~~~~~~~~~~iRis~~--~~~~~ 397 (416)
T PRK09440 324 YLPDEPCLIHKPEGAI---FLWLWFKDL-PITTEELYQRLKARGVLVVPGHYFFPGLDEDWPHAHQCIRMNYV--QDDEE 397 (416)
T ss_pred hcccCCeEEecCCCce---EEEEECCCC-CCCHHHHHHHHHHCCEEEechHhhCCCCccccCCcCceEEEEec--CCHHH
Confidence 3322122221233577 899988651 1356789999999999999741 248999954 58999
Q ss_pred HHHHHHHHHHHHHHHhh
Q psy6547 247 LREGLDIIINTINTMAA 263 (266)
Q Consensus 247 i~~~~~~l~~~~~~~~~ 263 (266)
+++++++|.+++++...
T Consensus 398 l~~~i~~l~~~~~~~~~ 414 (416)
T PRK09440 398 IEKGIAILAEEVEKAYA 414 (416)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 99999999999887543
No 160
>PTZ00433 tyrosine aminotransferase; Provisional
Probab=99.88 E-value=3.8e-21 Score=169.57 Aligned_cols=244 Identities=14% Similarity=0.117 Sum_probs=166.5
Q ss_pred CcCcccccCCCCCCceeecCC-------CHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEE
Q psy6547 6 DPTSYNEFGPHMPGYNIIPYN-------DVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFI 78 (266)
Q Consensus 6 ~~~~~~~~~~~~~~v~~~~~~-------d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li 78 (266)
++.....+...+.+++.++.+ |+++|++.+. +++++++++.++|++|.+ ++.+.+++|.++|+++|++||
T Consensus 138 y~~~~~~~~~~g~~~~~i~~~~~~~~~~d~~~l~~~~~--~~~~~i~~~~p~NPtG~~-~s~~~~~~l~~~a~~~~~~ii 214 (412)
T PTZ00433 138 FPHYETVCKAYGIEMRFYNCRPEKDWEADLDEIRRLVD--DRTKALIMTNPSNPCGSN-FSRKHVEDIIRLCEELRLPLI 214 (412)
T ss_pred cccHHHHHHHcCCEEEEEecCccccCcCCHHHHHHHhc--cCceEEEEeCCCCCCCcc-cCHHHHHHHHHHHHHcCCeEE
Confidence 333334456667777777642 5788988883 367888887778888876 899999999999999999999
Q ss_pred EeccccCcCCcCccc-ccccCC---CCcCeeeeccccc-CCchhhhhhee------cHHhhhccCCCCCCCCCCCcHHHH
Q psy6547 79 ADEVQTGLGRTGKLL-AIHYED---VRPDIVILGKALS-GGLYPISAVLA------DDEVMGTLVPGTHGSTYGGNPLAC 147 (266)
Q Consensus 79 ~De~~~~~~~~g~~~-~~~~~~---~~~d~~~~sK~~~-~g~~~~g~~~~------~~~~~~~~~~~~~~~~~~~~~~~~ 147 (266)
+||+|.+|...+..+ ...... ....+.+|||.++ +| +|+||+++ .+++.+.+.... ...++.+++.+
T Consensus 215 ~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~~~pG-lRlG~~i~~~p~~~~~~~~~~~~~~~-~~~~~~~~~~q 292 (412)
T PTZ00433 215 SDEIYAGMVFNGATFTSVADFDTTVPRVILGGTAKNLVVPG-WRLGWLLLVDPHGNGGDFLDGMKRLG-MLVCGPCSVVQ 292 (412)
T ss_pred EeccccccccCCCCccchhhccCCCceEEEccchhhcCCCC-eeEEEEEEeCCcccHHHHHHHHHHHh-hccCCCChHHH
Confidence 999998764333221 111111 1122334999996 89 99999986 234555554322 22356788888
Q ss_pred HHHHHHHHHH-h--hccHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeC---ccchHHHHHHHHH-
Q psy6547 148 KLAMTALDVI-L--EENMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVS---AILEVYDVCIKMK- 220 (266)
Q Consensus 148 ~a~~~~l~~~-~--~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~---~~~~~~~~~~~l~- 220 (266)
.++..+++.. . -++..++++++++.+.+.|++ .. .+....+..|+ |+|+.++.. +..+..++++.|+
T Consensus 293 ~a~~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~-~~--~~~~~~p~gg~---f~~~~l~~~~~~~~~~~~~~~~~ll~ 366 (412)
T PTZ00433 293 AALGEALLNTPQEHLEQIVAKLEEGAMVLYNHIGE-CI--GLSPTMPRGSM---FLMSRLDLEKFRDIKSDVEFYEKLLE 366 (412)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHhc-CC--CCcccCCCeeE---EEEEEechhhcCCCCCHHHHHHHHHH
Confidence 8887777531 1 133556667777777777766 21 22221234577 889888641 0124678999987
Q ss_pred HCCceeccCC----CCEEEEeccCCCCHHHHHHHHHHHHHHHHHHh
Q psy6547 221 DAGLVTKPIS----NNIIRLSPALNITEQELREGLDIIINTINTMA 262 (266)
Q Consensus 221 ~~gi~~~~~~----~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~~ 262 (266)
++||.+.++. .+++|++.. ..++++++++++|.+++++..
T Consensus 367 ~~gV~v~pg~~f~~~~~iRis~~--~~~e~l~~al~~l~~~~~~~~ 410 (412)
T PTZ00433 367 EENVQVLPGEIFHMPGFTRLTIS--RPVEVLREAVERIKAFCERHK 410 (412)
T ss_pred hcCEEEeCccccCCCCeEEEEec--CCHHHHHHHHHHHHHHHHHhc
Confidence 5799999862 579999954 568999999999999987643
No 161
>cd00609 AAT_like Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary hi
Probab=99.88 E-value=1.1e-21 Score=168.93 Aligned_cols=233 Identities=21% Similarity=0.191 Sum_probs=171.6
Q ss_pred cccccCCCCCCceeecCCC-----H--HHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEec
Q psy6547 9 SYNEFGPHMPGYNIIPYND-----V--DALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADE 81 (266)
Q Consensus 9 ~~~~~~~~~~~v~~~~~~d-----~--~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De 81 (266)
........+.+++.++.++ . +.++... ++++++++++++++++|.+ ++.+.+++|+++|+++|+++|+|+
T Consensus 96 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~--~~~~~~v~i~~~~~~tG~~-~~~~~l~~l~~~~~~~~~~~ivD~ 172 (350)
T cd00609 96 YEAAARLAGAEVVPVPLDEEGGFLLDLELLEAAK--TPKTKLLYLNNPNNPTGAV-LSEEELEELAELAKKHGILIISDE 172 (350)
T ss_pred HHHHHHHCCCEEEEEecccccCCccCHHHHHhhc--CccceEEEEECCCCCCCcc-cCHHHHHHHHHHHHhCCeEEEEec
Confidence 3333444556677777652 1 4455444 5578999999988888876 789999999999999999999999
Q ss_pred cccCcCCcCccc----ccccCCCCcCeeeeccccc-CCchhhhhheecH-HhhhccCCCCCCCCCCCcHHHHHHHHHHHH
Q psy6547 82 VQTGLGRTGKLL----AIHYEDVRPDIVILGKALS-GGLYPISAVLADD-EVMGTLVPGTHGSTYGGNPLACKLAMTALD 155 (266)
Q Consensus 82 ~~~~~~~~g~~~----~~~~~~~~~d~~~~sK~~~-~g~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~ 155 (266)
+|+++...+... .....+.+..+.+++|.++ +| .++|++++++ ++.+.+.......+++.+...+.++..+++
T Consensus 173 a~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~K~~~~~g-~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 251 (350)
T cd00609 173 AYAELVYDGEPPPALALLDAYERVIVLRSFSKTFGLPG-LRIGYLIAPPEELLERLKKLLPYTTSGPSTLSQAAAAAALD 251 (350)
T ss_pred chhhceeCCcccccccCcCccCcEEEEeecccccCCcc-cceEEEecCHHHHHHHHHHHHHhcccCCChHHHHHHHHHHh
Confidence 998765444321 1222333444556999999 88 8999999988 788887765555567778888888888887
Q ss_pred HH--hhccHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccC----
Q psy6547 156 VI--LEENMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPI---- 229 (266)
Q Consensus 156 ~~--~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~---- 229 (266)
.. ..+...+++.++++++++.|++ .+.... . ....|. ++++.+.. ..+...+.+.|.++||.+.++
T Consensus 252 ~~~~~~~~~~~~~~~~~~~l~~~L~~-~~~~~~-~-~~~~g~---~~~~~~~~--~~~~~~~~~~l~~~gi~i~~~~~~~ 323 (350)
T cd00609 252 DGEEHLEELRERYRRRRDALLEALKE-LGPLVV-V-KPSGGF---FLWLDLPE--GDDEEFLERLLLEAGVVVRPGSAFG 323 (350)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHh-cCCccc-c-CCCccE---EEEEecCC--CChHHHHHHHHHhCCEEEecccccc
Confidence 65 2345778888899999999988 544222 2 335577 88888766 334666777778889999876
Q ss_pred --CCCEEEEeccCCCCHHHHHHHHHHHH
Q psy6547 230 --SNNIIRLSPALNITEQELREGLDIII 255 (266)
Q Consensus 230 --~~~~iR~~~~~~~t~~~i~~~~~~l~ 255 (266)
...++|++++.. ++++++++++|+
T Consensus 324 ~~~~~~iRi~~~~~--~~~i~~~~~al~ 349 (350)
T cd00609 324 EGGEGFVRLSFATP--EEELEEALERLA 349 (350)
T ss_pred cCCCCeEEEEeeCC--HHHHHHHHHHhh
Confidence 568999998876 999999999886
No 162
>PRK06107 aspartate aminotransferase; Provisional
Probab=99.88 E-value=1.8e-21 Score=171.19 Aligned_cols=223 Identities=15% Similarity=0.108 Sum_probs=159.3
Q ss_pred CHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhc-CCEEEEeccccCcCCcCccc-cccc--CC---
Q psy6547 27 DVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQY-NVLFIADEVQTGLGRTGKLL-AIHY--ED--- 99 (266)
Q Consensus 27 d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~-g~~li~De~~~~~~~~g~~~-~~~~--~~--- 99 (266)
|++++++.++ +++++++++.++|++|.+ ++.+.+++++++|++| |+++|+||+|..+...+..+ .+.. .+
T Consensus 155 ~~~~l~~~~~--~~~~~v~l~~p~NPtG~~-~s~~~~~~l~~~a~~~~~~~iI~De~y~~l~~~~~~~~~~~~~~~~~~~ 231 (402)
T PRK06107 155 TPEALEAAIT--PRTRWLILNAPSNPTGAV-YSRAELRALADVLLRHPHVLVLTDDIYDHIRFDDEPTPHLLAAAPELRD 231 (402)
T ss_pred CHHHHHhhcC--cCceEEEEECCCCCCCcC-cCHHHHHHHHHHHHHcCCeEEEEehhccccccCCCCCCCHHHhCcCccC
Confidence 5788888883 467777777678888877 8999999999999998 99999999997763333211 1111 11
Q ss_pred CCcCeeeeccccc-CCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHh--hccHHHHHHHHHHHHHHH
Q psy6547 100 VRPDIVILGKALS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVIL--EENMIENAYKMGEIFRSE 176 (266)
Q Consensus 100 ~~~d~~~~sK~~~-~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~--~~~~~~~~~~~~~~l~~~ 176 (266)
....+.++||.++ +| +|+||+++++++.+.+.......+++.+.+.+.++..+|+... -+...+.++++++.+.+.
T Consensus 232 ~vi~~~S~SK~~~~pG-lRiG~~~~~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 310 (402)
T PRK06107 232 RVLVTNGVSKTYAMTG-WRIGYAAGPADLIAAINKLQSQSSSCPSSISQAAAAAALNGDQSFVTESVAVYKQRRDYALAL 310 (402)
T ss_pred CEEEEeccchhhcCcc-cceeeeecCHHHHHHHHHHHHhcccCCChHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHH
Confidence 2233444899998 99 9999999999999888876666677788899998888774211 123455667777777777
Q ss_pred hhcccccCCCcccEEecCccceeeEEEEeeC------cc---chHHHHHHHH-HHCCceeccC----CCCEEEEeccCCC
Q psy6547 177 LSSPANKSKASFKLSSGGLKKSINTLILSVS------AI---LEVYDVCIKM-KDAGLVTKPI----SNNIIRLSPALNI 242 (266)
Q Consensus 177 l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~------~~---~~~~~~~~~l-~~~gi~~~~~----~~~~iR~~~~~~~ 242 (266)
|++ .+. +....+..|. ++|+.++.. .+ .+..+++.+| .++||.+.|+ ..+++|++.. .
T Consensus 311 L~~-~~g--~~~~~p~gg~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gv~v~pg~~Fg~~~~iRis~~--~ 382 (402)
T PRK06107 311 LNA-IPG--LSCLVPDGAF---YLYVNCAGLIGKTTPEGKVLETDQDVVLYLLDSAGVAVVQGTAYGLSPYFRLSIA--T 382 (402)
T ss_pred Hhc-CCC--CcccCCCcce---EEeeecccccccccccccCCCCHHHHHHHHHHhCCEEEeCccccCCCCeEEEEeC--C
Confidence 776 422 2221234566 788876320 01 2456777666 5789999986 2479999955 6
Q ss_pred CHHHHHHHHHHHHHHHHHH
Q psy6547 243 TEQELREGLDIIINTINTM 261 (266)
Q Consensus 243 t~~~i~~~~~~l~~~~~~~ 261 (266)
+++++++++++|.+.++++
T Consensus 383 ~~e~l~~~l~~l~~~l~~~ 401 (402)
T PRK06107 383 SLETLEEACARIERAVAAL 401 (402)
T ss_pred CHHHHHHHHHHHHHHHHhc
Confidence 8999999999999988764
No 163
>PRK08056 threonine-phosphate decarboxylase; Provisional
Probab=99.88 E-value=2.4e-21 Score=167.80 Aligned_cols=229 Identities=13% Similarity=0.115 Sum_probs=160.2
Q ss_pred cccCCCCCCceeecCC-----CH-HHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEecccc
Q psy6547 11 NEFGPHMPGYNIIPYN-----DV-DALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQT 84 (266)
Q Consensus 11 ~~~~~~~~~v~~~~~~-----d~-~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~ 84 (266)
..+...+.+++.++.. ++ +++.+.+ .+++++++++.++|++|.+ ++.+.+++|+++|+++|++||+||+|.
T Consensus 109 ~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~--~~~~k~v~l~~p~NPTG~~-~~~~~~~~i~~~a~~~~~~ii~De~y~ 185 (356)
T PRK08056 109 RALQQVGCEIRRYSLREADGWQLTDAILEAL--TPDLDCLFLCTPNNPTGLL-PERQLLQAIAERCKSLNIALILDEAFI 185 (356)
T ss_pred HHHHHcCCeEEEEecccccCCCccHHHHHhc--cCCCCEEEEeCCcCCCCCC-CCHHHHHHHHHHHHhcCCEEEEecchh
Confidence 3345667788888753 12 2444555 3568888888889999986 899999999999999999999999998
Q ss_pred CcCCcCccc--ccccCCCCcCeeeeccccc-CCchhhhhhee-cHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHh-h
Q psy6547 85 GLGRTGKLL--AIHYEDVRPDIVILGKALS-GGLYPISAVLA-DDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVIL-E 159 (266)
Q Consensus 85 ~~~~~g~~~--~~~~~~~~~d~~~~sK~~~-~g~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~-~ 159 (266)
+|...+..+ .....+....+.++||+++ +| +|+||+++ ++++++.+.. ....++.+.+++.++..+++.-. .
T Consensus 186 ~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G-~RiG~~v~~~~~~~~~l~~--~~~~~~~~~~~~~~a~~~l~~~~~~ 262 (356)
T PRK08056 186 DFIPDETGFIPQLADNPHLWVLRSLTKFYAIPG-LRLGYLVNSDDAAVARMRR--QQMPWSINAFAALAGEVILQDRAYQ 262 (356)
T ss_pred ccCCcchHHHHHhccCCCEEEEEechhhccCcc-hhheeeecCCHHHHHHHHH--hCCCCchhHHHHHHHHHHhCCHHHH
Confidence 874433211 1222233344556999999 99 99999998 4566666653 23445667777777776664211 1
Q ss_pred ccHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccCC------CCE
Q psy6547 160 ENMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPIS------NNI 233 (266)
Q Consensus 160 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~------~~~ 233 (266)
....+.++++++.+.+.|++ +.. +.. .++.|. ++|+.++. +..+++++|+++||.++++. .++
T Consensus 263 ~~~~~~~~~~r~~l~~~L~~-~~~--~~~-~~~~~~---~~~~~~~~----~~~~~~~~l~~~gI~v~~~~~f~~~~~~~ 331 (356)
T PRK08056 263 QATWQWLAEEGARFYQALCA-LPL--LTV-WPGRAN---YLFLRCER----PDIDLQRALLTQRILIRSCANYPGLDSRY 331 (356)
T ss_pred HHHHHHHHHHHHHHHHHHhc-CCC--cEE-cCCCCc---EEEEEcCC----ChHHHHHHHHHCCeEEEECCCCCCCCCCE
Confidence 23456677777888888876 432 222 233567 88888865 35689999999999998652 368
Q ss_pred EEEeccCCCCHHHHHHHHHHHHHHHH
Q psy6547 234 IRLSPALNITEQELREGLDIIINTIN 259 (266)
Q Consensus 234 iR~~~~~~~t~~~i~~~~~~l~~~~~ 259 (266)
+|+++ .++++.+.+++.|+++++
T Consensus 332 iRis~---~~~~~~~~l~~~l~~~~~ 354 (356)
T PRK08056 332 YRVAI---RSAAENERLLAALRNVLT 354 (356)
T ss_pred EEEEE---cCHHHHHHHHHHHHHHHc
Confidence 99993 377889999999987754
No 164
>TIGR03539 DapC_actino succinyldiaminopimelate transaminase. This family of actinobacterial succinyldiaminopimelate transaminase enzymes (DapC) are members of the pfam00155 superfamily. Many of these genes appear adjacent to other genes encoding enzymes of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).
Probab=99.88 E-value=7.8e-22 Score=170.87 Aligned_cols=220 Identities=14% Similarity=0.106 Sum_probs=152.4
Q ss_pred cCCCCCCceeecCCCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCcc
Q psy6547 13 FGPHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKL 92 (266)
Q Consensus 13 ~~~~~~~v~~~~~~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~ 92 (266)
...++.+++.+ +++++++ .++++++++++++|++|.+ ++.+.+++|.++|++||+++|+||+|.++...+..
T Consensus 122 ~~~~g~~~~~v--~~~~~l~-----~~~~~~v~~~~p~NPtG~~-~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~ 193 (357)
T TIGR03539 122 ALLAGATPVAA--DDPTELD-----PVGPDLIWLNSPGNPTGRV-LSVDELRAIVAWARERGAVVASDECYLELGWEGRP 193 (357)
T ss_pred HHhcCCEEecc--CChhhcC-----ccCccEEEEeCCCCCcCcc-CCHHHHHHHHHHHHHcCeEEEEecchhhhccCCCC
Confidence 34445555554 3443322 2367899988888889987 89999999999999999999999999776543322
Q ss_pred cc-ccc------CCCCcCeeeeccccc-CCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHh-hccHH
Q psy6547 93 LA-IHY------EDVRPDIVILGKALS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVIL-EENMI 163 (266)
Q Consensus 93 ~~-~~~------~~~~~d~~~~sK~~~-~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~-~~~~~ 163 (266)
.. +.. ......+.+|||.++ +| +|+||+++++++.+.+........++.+.+.+.++..+|+... -+...
T Consensus 194 ~~~~~~~~~~~~~~~vi~~~S~SK~~~~~G-~R~G~~i~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~ 272 (357)
T TIGR03539 194 VSILDPRVCGGDHTGLLAVHSLSKRSNLAG-YRAGFVAGDPALVAELLTVRKHAGLMVPAPVQAAMVAALGDDGHVAEQK 272 (357)
T ss_pred ccceecccCCCccccEEEEeccccccCCCc-eeEEEEecCHHHHHHHHHHHhhcccCCCHHHHHHHHHHcCCHHHHHHHH
Confidence 11 110 111233345999996 88 9999999999888877654444556678888888877774311 12345
Q ss_pred HHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccC------CCCEEEEe
Q psy6547 164 ENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPI------SNNIIRLS 237 (266)
Q Consensus 164 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~------~~~~iR~~ 237 (266)
.+++++++.+.+.|++ .+ +.......|. ++|+.++. +..++.++|.++||.+.|+ +.+++|++
T Consensus 273 ~~~~~~~~~~~~~L~~-~g---~~~~~p~~~~---~~~~~~~~----~~~~~~~~l~~~gV~v~pg~~f~~~~~~~iRis 341 (357)
T TIGR03539 273 ARYAARRAQLKPALEK-AG---FRIDHSEAGL---YLWATRGE----DAWDTVDRLAELGILVAPGDFYGPAGSQHVRVA 341 (357)
T ss_pred HHHHHHHHHHHHHHHH-cC---CCCcCCCccE---EEEEECCC----CHHHHHHHHHhCCEEECCccccCCCCCCeEEEE
Confidence 6666777777777776 43 2221223455 67777654 5678999999999999885 24799999
Q ss_pred ccCCCCHHHHHHHHHHH
Q psy6547 238 PALNITEQELREGLDII 254 (266)
Q Consensus 238 ~~~~~t~~~i~~~~~~l 254 (266)
.. .+++++++++++|
T Consensus 342 ~~--~~~~~i~~~~~~l 356 (357)
T TIGR03539 342 LT--ATDERIAAAVARL 356 (357)
T ss_pred ec--CCHHHHHHHHHhh
Confidence 54 4789999998876
No 165
>PLN02376 1-aminocyclopropane-1-carboxylate synthase
Probab=99.88 E-value=2.8e-21 Score=173.24 Aligned_cols=245 Identities=16% Similarity=0.129 Sum_probs=162.6
Q ss_pred CCcCcccccC-CCCCCceeecCC-------CHHHHHHHHhc----CCCEEEEEEccccCCCCcccCChHHHHHHHHHHHh
Q psy6547 5 TDPTSYNEFG-PHMPGYNIIPYN-------DVDALEAKLKS----NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQ 72 (266)
Q Consensus 5 ~~~~~~~~~~-~~~~~v~~~~~~-------d~~~l~~~l~~----~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~ 72 (266)
.+|.+...+. -.+.+++.++.. |+++++..+++ ..++++++++.++|++|.+ ++.+.+++|.++|++
T Consensus 152 ~Y~~~~~~~~~~~G~~vv~v~~~~~~~~~~~~~~le~a~~~a~~~~~~~k~l~l~nP~NPTG~~-~s~e~l~~L~~~a~~ 230 (496)
T PLN02376 152 YYAAFDRDLRWRTGVEIIPVPCSSSDNFKLTVDAADWAYKKAQESNKKVKGLILTNPSNPLGTM-LDKDTLTNLVRFVTR 230 (496)
T ss_pred CccchHHHHHhhCCCEEEEEeCCCCccCcCCHHHHHHHHHHHHhcCCCeeEEEEcCCCCCCCcc-CCHHHHHHHHHHHHH
Confidence 4455544454 367888888862 57888766432 3478888888788889987 999999999999999
Q ss_pred cCCEEEEeccccCcCCcCccc-ccccC----C---CCcC----eeeeccccc-CCchhhhhheec-HHhhhccCCCCCCC
Q psy6547 73 YNVLFIADEVQTGLGRTGKLL-AIHYE----D---VRPD----IVILGKALS-GGLYPISAVLAD-DEVMGTLVPGTHGS 138 (266)
Q Consensus 73 ~g~~li~De~~~~~~~~g~~~-~~~~~----~---~~~d----~~~~sK~~~-~g~~~~g~~~~~-~~~~~~~~~~~~~~ 138 (266)
||++||+||+|.++...+..+ +.... . ..++ +.+|||.++ +| +|+||++++ +.+.+.+.. ...
T Consensus 231 ~~i~lI~DEiY~~~~f~~~~~~si~~l~~~~~~~~~~~~~v~vv~S~SK~~glpG-lRvG~li~~~~~l~~~~~~--~~~ 307 (496)
T PLN02376 231 KNIHLVVDEIYAATVFAGGDFVSVAEVVNDVDISEVNVDLIHIVYSLSKDMGLPG-FRVGIVYSFNDSVVSCARK--MSS 307 (496)
T ss_pred cCCEEEEEcCccccccCCCCcccHHHhhccccccccCCCeEEEEEeccccCCCCc-ceEEEEEECCHHHHHHHHH--Hhh
Confidence 999999999998753333222 11100 1 1122 345999998 99 999999984 555444432 122
Q ss_pred CCCCcHHHHHHHHHHHHHHhh-c----cHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCc----c
Q psy6547 139 TYGGNPLACKLAMTALDVILE-E----NMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSA----I 209 (266)
Q Consensus 139 ~~~~~~~~~~a~~~~l~~~~~-~----~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~----~ 209 (266)
....+.+.+.++...|+.-.- + ..+++++++.+.+.+.|++ .+ +.......|+ |+|++++... .
T Consensus 308 ~~~vs~~~Q~a~~~~L~d~~~~~~~l~~~r~~l~~r~~~l~~~L~~-~g---i~~~~~~aG~---flwi~l~~~~~~~~~ 380 (496)
T PLN02376 308 FGLVSSQTQLMLASMLSDDQFVDNFLMESSRRLGIRHKVFTTGIKK-AD---IACLTSNAGL---FAWMDLRHLLRDRNS 380 (496)
T ss_pred cCCCCHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHHHHHH-CC---CcccCCCceE---EEEEEchhhhccCCc
Confidence 223567777777766643111 1 1244455566666666665 32 3221234578 9999986410 1
Q ss_pred -chHHHHHHHHHH-CCceeccC------CCCEEEEeccCCCCHHHHHHHHHHHHHHHHHH
Q psy6547 210 -LEVYDVCIKMKD-AGLVTKPI------SNNIIRLSPALNITEQELREGLDIIINTINTM 261 (266)
Q Consensus 210 -~~~~~~~~~l~~-~gi~~~~~------~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~ 261 (266)
.+..++.++|.+ .||.+.|+ .++++|++... .+++++++++++|.+++.+.
T Consensus 381 ~~~e~~l~~~ll~~~gV~v~pGs~F~~~~~g~~Ri~fa~-~~~~~l~~al~rl~~~l~~~ 439 (496)
T PLN02376 381 FESEIELWHIIIDKVKLNVSPGSSFRCTEPGWFRICFAN-MDDDTLHVALGRIQDFVSKN 439 (496)
T ss_pred hhHHHHHHHHHHHcCCEEEeCccccCCCCCCEEEEEeeC-CCHHHHHHHHHHHHHHHHHh
Confidence 123678888876 59999986 25799999543 47899999999999998654
No 166
>PRK02731 histidinol-phosphate aminotransferase; Validated
Probab=99.88 E-value=4e-21 Score=167.10 Aligned_cols=225 Identities=18% Similarity=0.174 Sum_probs=160.3
Q ss_pred CCCCCceeecCC----CHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcC
Q psy6547 15 PHMPGYNIIPYN----DVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTG 90 (266)
Q Consensus 15 ~~~~~v~~~~~~----d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g 90 (266)
..+.+++.++.+ |++++++.+ ++++++++++.++|++|.+ ++.+.++++++.|+ +|+++|+||+|.++...+
T Consensus 127 ~~g~~~~~~~~~~~~~~~~~l~~~~--~~~~~~v~l~~p~nptG~~-~~~~~l~~l~~~~~-~~~~li~De~y~~~~~~~ 202 (367)
T PRK02731 127 AVGAKPVEVPAKDYGHDLDAMLAAV--TPRTRLVFIANPNNPTGTY-LPAEEVERFLAGVP-PDVLVVLDEAYAEYVRRK 202 (367)
T ss_pred HcCCeEEEecccCCCCCHHHHHHHh--CCCCcEEEEeCCCCCCCcC-CCHHHHHHHHHhCC-CCcEEEEECcHHHhccCc
Confidence 346677777643 789999988 3467888888888889987 77777777777664 599999999997664322
Q ss_pred c-ccccccCCCCcCe---eeeccccc-CCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHh-hccHHH
Q psy6547 91 K-LLAIHYEDVRPDI---VILGKALS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVIL-EENMIE 164 (266)
Q Consensus 91 ~-~~~~~~~~~~~d~---~~~sK~~~-~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~-~~~~~~ 164 (266)
. .......+...++ .++||.++ +| +|+||+++++++.+.+.... ..+..+++++.++..+++... -++..+
T Consensus 203 ~~~~~~~~~~~~~~~i~~~S~SK~~g~~G-~RiG~l~~~~~~~~~l~~~~--~~~~~~~~~~~~a~~~l~~~~~~~~~~~ 279 (367)
T PRK02731 203 DYEDGLELVAKFPNVVVTRTFSKAYGLAG-LRVGYGIAPPEIIDALNRVR--QPFNVNSLALAAAVAALDDDAFVEKSRA 279 (367)
T ss_pred CcccHHHHHhhcCCEEEEeeehHhhcCcc-cceeeeeCCHHHHHHHHHcc--CCCCCCHHHHHHHHHHhCCHHHHHHHHH
Confidence 1 1111111222333 35999998 88 99999999999888776432 345667888888877775321 134556
Q ss_pred HHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccCC----CCEEEEeccC
Q psy6547 165 NAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPIS----NNIIRLSPAL 240 (266)
Q Consensus 165 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~----~~~iR~~~~~ 240 (266)
+++++.+.+.+.|++ .+ +.. .++.|. ++|+.++. ..++.+++++|.++||.++++. .+++|++++
T Consensus 280 ~~~~~~~~l~~~L~~-~g---~~~-~~~~g~---~~~i~~~~--~~~~~~~~~~L~~~gI~v~~~~~~~~~~~iRis~~- 348 (367)
T PRK02731 280 LNAEGMAWLTEFLAE-LG---LEY-IPSVGN---FILVDFDD--GKDAAEAYQALLKRGVIVRPVAGYGLPNALRITIG- 348 (367)
T ss_pred HHHHHHHHHHHHHHH-CC---Ccc-CCCCce---EEEEECCC--CCCHHHHHHHHHHCCEEEEeCCCCCCCCeEEEecC-
Confidence 666777777777776 43 222 223466 99999865 4578899999999999999763 478999943
Q ss_pred CCCHHHHHHHHHHHHHHHH
Q psy6547 241 NITEQELREGLDIIINTIN 259 (266)
Q Consensus 241 ~~t~~~i~~~~~~l~~~~~ 259 (266)
+.++++++++.|+++++
T Consensus 349 --~~~e~~~l~~aL~~~~~ 365 (367)
T PRK02731 349 --TEEENRRFLAALKEFLA 365 (367)
T ss_pred --CHHHHHHHHHHHHHHHh
Confidence 78899999999988764
No 167
>PRK06855 aminotransferase; Validated
Probab=99.88 E-value=3.9e-21 Score=170.38 Aligned_cols=226 Identities=15% Similarity=0.185 Sum_probs=152.6
Q ss_pred CHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCcc-ccc-c--cCCCCc
Q psy6547 27 DVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKL-LAI-H--YEDVRP 102 (266)
Q Consensus 27 d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~-~~~-~--~~~~~~ 102 (266)
|+++|++.+++++++++++++.++|++|.+ ++.+.+++|.++|++||++||+||+|.++...+.. .++ . ..+...
T Consensus 158 d~~~l~~~~~~~~~~~~i~l~~P~NPTG~~-~s~~~~~~l~~~a~~~~~~II~De~Y~~l~~~~~~~~sl~~~~~~~~~I 236 (433)
T PRK06855 158 DLDDLENKVKYNPSIAGILLINPDNPTGAV-YPKEILREIVDIAREYDLFIICDEIYNNIVYNGKKTVPLSEVIGDVPGI 236 (433)
T ss_pred CHHHHHHHHhcCCCceEEEEECCCCCCCcC-CCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCCCHHHHcCcCCeE
Confidence 789999999654566777766668888886 99999999999999999999999999887443421 111 1 111234
Q ss_pred Ceeeeccccc-CCchhhhhheec-----H---HhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHh--h--ccHHHHHHHH
Q psy6547 103 DIVILGKALS-GGLYPISAVLAD-----D---EVMGTLVPGTHGSTYGGNPLACKLAMTALDVIL--E--ENMIENAYKM 169 (266)
Q Consensus 103 d~~~~sK~~~-~g~~~~g~~~~~-----~---~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~--~--~~~~~~~~~~ 169 (266)
.+.+|||.++ +| +|+||++++ + .+++.+..... ...+++.+.+.++..+++.-. . ++..+.++++
T Consensus 237 ~~~S~SK~~~~pG-lRiG~ii~p~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Q~a~~~~l~~~~~~~~~~~~~~~~~~r 314 (433)
T PRK06855 237 ALKGISKELPWPG-SRCGWIEVYNADKDEVFKKYINSILNAKM-IEVCSTTLPQMAIPRIMSHPEYKNYLKERNKRYEKR 314 (433)
T ss_pred EEecCccccCCCc-ceEEEEEEeCCchhhHHHHHHHHHHHhhc-cccCCChHHHHHHHHhhcCCcHHHHHHHHHHHHHHH
Confidence 4556999997 99 999999972 2 23333322222 234567788888877774311 1 2345556666
Q ss_pred HHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCc-------c------------------chHHHHHHH-HHHCC
Q psy6547 170 GEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSA-------I------------------LEVYDVCIK-MKDAG 223 (266)
Q Consensus 170 ~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-------~------------------~~~~~~~~~-l~~~g 223 (266)
++.+.+.|.+ +. .+....+..|. ++|+.+++.. . .+..+++.. +.++|
T Consensus 315 ~~~~~~~L~~-~~--~~~~~~p~gg~---~~w~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g 388 (433)
T PRK06855 315 SNIAYEKLKD-VP--GLKVNRTNGAF---YMTVVFEDGVLNNKQSLPIENPEVKEYVEGLVKGPVSPDKRFVYYLLASTG 388 (433)
T ss_pred HHHHHHHHhc-CC--CeeccCCCeeE---EEeeccccccccccccCCcchhhhHHHHHHHHhcCCCchHHHHHHHHHHcC
Confidence 6667777765 32 22221334567 8999887520 0 124566755 55789
Q ss_pred ceeccCC-----CCEEEEeccCCCCHHHHHHHHHHHHHHHHHHh
Q psy6547 224 LVTKPIS-----NNIIRLSPALNITEQELREGLDIIINTINTMA 262 (266)
Q Consensus 224 i~~~~~~-----~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~~ 262 (266)
|.+.|+. .+.+|++... .+++++++++++|.+++.+..
T Consensus 389 V~v~PG~~F~~~~~~~Rls~~~-~~~~~i~~~~~~l~~~~~~~~ 431 (433)
T PRK06855 389 ICVVPLSSFCTELNGFRVTLLE-RDEEKFEWIYQTLAEKIEEYL 431 (433)
T ss_pred EEEecCCcCCCCCCceEEEECC-CcHHHHHHHHHHHHHHHHHHh
Confidence 9999862 2469999654 489999999999999987643
No 168
>TIGR02326 transamin_PhnW 2-aminoethylphosphonate--pyruvate transaminase. Members of this family are 2-aminoethylphosphonate--pyruvate transaminase. This enzyme acts on the most common type of naturally occurring phosphonate. It interconverts 2-aminoethylphosphonate plus pyruvate with 2-phosphonoacetaldehyde plus alanine. The enzyme phosphonoacetaldehyde hydrolase (EC 3.11.1.1), usually encoded by an adjacent gene, then cleaves the C-P bond of phosphonoacetaldehyde, adding water to yield acetaldehyde plus inorganic phosphate. Species with this pathway generally have an identified phosphonate ABC transporter but do not also have the multisubunit C-P lysase complex as found in Escherichia coli.
Probab=99.88 E-value=2.2e-20 Score=162.26 Aligned_cols=234 Identities=13% Similarity=0.097 Sum_probs=169.6
Q ss_pred CCCCCCceeecCC-----CHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCC
Q psy6547 14 GPHMPGYNIIPYN-----DVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGR 88 (266)
Q Consensus 14 ~~~~~~v~~~~~~-----d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~ 88 (266)
..++.+++.++.+ |+++++++++++++++++.+..+.+++|.+. ++++|.++|++||+++++|++|+ ++.
T Consensus 98 ~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~~v~~~~~~~~tG~~~----~i~~I~~l~~~~g~~livD~~~~-~g~ 172 (363)
T TIGR02326 98 EYLGIPHHVVDTGEVEPPDVVEVEAILAADPAITHIALVHCETTTGILN----PIEAVAKLAHRHGKVTIVDAMSS-FGG 172 (363)
T ss_pred HHcCCceEEEeCCCCCCCCHHHHHHHHhhCCCccEEEEEeecCCccccC----cHHHHHHHHHHcCCEEEEEcccc-ccC
Confidence 3456777877754 7899999997655677777787888899986 78999999999999999999884 432
Q ss_pred cCcccccccCCCCcCeeeecccccCCchhhhhheecHHhhhccCCC------------------CCCCCCCCcHHHHHHH
Q psy6547 89 TGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPG------------------THGSTYGGNPLACKLA 150 (266)
Q Consensus 89 ~g~~~~~~~~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~a~ 150 (266)
.++....++.+..+.+++|+++++ .++|+++++++.++.+... .....|+.+...+.+.
T Consensus 173 --~~~~~~~~~~D~~~~s~~K~l~~p-~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ft~~~~~~~al 249 (363)
T TIGR02326 173 --IPIDIAELHIDYLISSANKCIQGV-PGFGFVIARQAELAACKGNARSLSLDLYDQWRCMEDNHGKWRFTSPTHVVHAF 249 (363)
T ss_pred --cccchhhcCccEEEecCccccccC-CcceEEEECHHHHHHhhcCCCceeecHHHHHHHHhccCCCCCCCCcHHHHHHH
Confidence 234445555555555588999866 5689999998877654321 0113456677777777
Q ss_pred HHHHHHHhhc----cHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCcee
Q psy6547 151 MTALDVILEE----NMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVT 226 (266)
Q Consensus 151 ~~~l~~~~~~----~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~ 226 (266)
.++++.+..+ +..++++++++++++.|++ ++...+.......+. +.++.+++....+..++.+.|.++||.+
T Consensus 250 ~~al~~l~~~g~~~~~~~~~~~~~~~l~~~L~~-~g~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~v~~~L~~~gi~v 325 (363)
T TIGR02326 250 AQALLELEKEGGVAARHQRYQQNQKTLVAGMRA-LGFEPLLDDEIQSPI---ITSFYSPEDPDYRFADFYQRLKEQGFVI 325 (363)
T ss_pred HHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHH-cCCeeccCcccCCce---EEEEECCCCCCCCHHHHHHHHHHCCEEE
Confidence 7888776443 4678888999999999987 554332210112334 5677776521246678999999999999
Q ss_pred ccCC---CCEEEEeccCCCCHHHHHHHHHHHHHHHH
Q psy6547 227 KPIS---NNIIRLSPALNITEQELREGLDIIINTIN 259 (266)
Q Consensus 227 ~~~~---~~~iR~~~~~~~t~~~i~~~~~~l~~~~~ 259 (266)
+++. .+++|++++..++.+++++++++|++++.
T Consensus 326 ~~g~~~~~~~iRi~~~~~~~~edv~~~l~~l~~~l~ 361 (363)
T TIGR02326 326 YPGKVSQVDCFRIGNIGEVDAADITRLLTAIGKAMY 361 (363)
T ss_pred ECCcCCCCCEEEEecCCCCCHHHHHHHHHHHHHHhC
Confidence 8763 47899998778899999999999998763
No 169
>COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]
Probab=99.88 E-value=4e-21 Score=159.59 Aligned_cols=245 Identities=17% Similarity=0.174 Sum_probs=174.8
Q ss_pred CcCcccccCCCCCCceeecCC--------CHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEE
Q psy6547 6 DPTSYNEFGPHMPGYNIIPYN--------DVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLF 77 (266)
Q Consensus 6 ~~~~~~~~~~~~~~v~~~~~~--------d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~l 77 (266)
||.+.+...-.+.+++..|-- |.++||+.++ +++++++++.++||++|.+ ++.+.|++|.++|.+||+.|
T Consensus 117 Y~PF~~~i~~n~R~~i~~pL~~~~~~y~iD~~~LE~~~~-~~~vkl~iLCnPHNP~Grv-wt~eeL~~i~elc~kh~v~V 194 (388)
T COG1168 117 YPPFYNAIKLNGRKVIENPLVEDDGRYEIDFDALEKAFV-DERVKLFILCNPHNPTGRV-WTKEELRKIAELCLRHGVRV 194 (388)
T ss_pred chHHHHHHhhcCcEEEeccccccCCcEEecHHHHHHHHh-cCCccEEEEeCCCCCCCcc-ccHHHHHHHHHHHHHcCCEE
Confidence 344444445556667766532 8999999995 4467899988899999977 99999999999999999999
Q ss_pred EEeccccCcCCcC-cccccccCC-----CCcCeeeeccccc-CCchhhhhhee-cHHhhhc-cCCCCCCCCCCCcHHHHH
Q psy6547 78 IADEVQTGLGRTG-KLLAIHYED-----VRPDIVILGKALS-GGLYPISAVLA-DDEVMGT-LVPGTHGSTYGGNPLACK 148 (266)
Q Consensus 78 i~De~~~~~~~~g-~~~~~~~~~-----~~~d~~~~sK~~~-~g~~~~g~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~ 148 (266)
|.||+|.++-..| .++.+.... ....+.+-||+|+ +| +..+.++. ++++.++ ++.........+|.+++.
T Consensus 195 ISDEIHaDlv~~g~~h~~~a~ls~~~a~~~it~~saSKtFNlaG-L~~a~~Ii~n~~lr~~~~~~l~~~~~~~~n~lg~~ 273 (388)
T COG1168 195 ISDEIHADLVLGGHKHIPFASLSERFADNSITLTSASKTFNLAG-LKCAYIIISNRELRAKFLKRLKRNGLHGPSALGII 273 (388)
T ss_pred EeecccccccccCCCccchhhcChhhhcceEEEeeccccccchh-hhheeEEecCHHHHHHHHHHHHHhcCCCCchHHHH
Confidence 9999999875555 333322111 1222333689999 88 88887665 4444333 233334555667889999
Q ss_pred HHHHHHHHHhh--ccHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHC-Cce
Q psy6547 149 LAMTALDVILE--ENMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDA-GLV 225 (266)
Q Consensus 149 a~~~~l~~~~~--~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~-gi~ 225 (266)
|..++.+.-+. +++.+.++++.+++.+.+.+.+++ +.. ....|. =..|+++..- +.+..++.+.|+++ +|.
T Consensus 274 A~~aAY~~G~~WLd~L~~yl~~N~~~~~~~l~~~~P~--v~v-~~p~gT--YL~WLD~r~l-~l~d~~l~~~ll~~akVa 347 (388)
T COG1168 274 ATEAAYNQGEPWLDELLEYLKDNRDYVADFLNKHLPG--VKV-TEPQGT--YLAWLDCREL-GLDDSELAEFLLEEAKVA 347 (388)
T ss_pred HHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhhCCC--cEE-ecCCCc--eeeeeecccc-CCChHHHHHHHHHhhcEe
Confidence 98888876444 567888888999999988884443 332 223343 0477887763 34557888888754 777
Q ss_pred eccC------CCCEEEEeccCCCCHHHHHHHHHHHHHHHHHH
Q psy6547 226 TKPI------SNNIIRLSPALNITEQELREGLDIIINTINTM 261 (266)
Q Consensus 226 ~~~~------~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~ 261 (266)
+.++ +.+++|+. ++++++.+++++++|..++++.
T Consensus 348 l~~G~~FG~~g~gf~RlN--~acpr~~L~eal~ri~~al~~~ 387 (388)
T COG1168 348 LSPGSTFGEEGSGFVRLN--FACPRAILEEALERLKRALKKR 387 (388)
T ss_pred ccCCCccCcCCCceEEEe--cCCCHHHHHHHHHHHHHHHhcc
Confidence 7654 56899999 8899999999999999988753
No 170
>PRK06358 threonine-phosphate decarboxylase; Provisional
Probab=99.88 E-value=4.2e-21 Score=166.06 Aligned_cols=231 Identities=12% Similarity=0.107 Sum_probs=160.3
Q ss_pred cCcccccCCCCCCceeecCCC-----H-HHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEe
Q psy6547 7 PTSYNEFGPHMPGYNIIPYND-----V-DALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIAD 80 (266)
Q Consensus 7 ~~~~~~~~~~~~~v~~~~~~d-----~-~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~D 80 (266)
+.....+...+.+++.++.++ + +++.+.+ .+++++++++.++|++|.+ ++.+.+++|.++|++||+++|+|
T Consensus 104 ~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~~~~~--~~~~~~v~~~~P~NPtG~~-~~~~~~~~l~~~a~~~~~~ii~D 180 (354)
T PRK06358 104 AEYERALKAFDAEIEYAELTEETNFAANEIVLEEI--KEEIDLVFLCNPNNPTGQL-ISKEEMKKILDKCEKRNIYLIID 180 (354)
T ss_pred HHHHHHHHHcCCeeEEEeCccccCCCccHHHHHhh--ccCCCEEEEeCCCCCCCCc-cCHHHHHHHHHHHHhcCCEEEEe
Confidence 333444555677777776431 2 3344444 2346777655558888877 89999999999999999999999
Q ss_pred ccccCcCCcCcccc----cccCCCCcCeeeeccccc-CCchhhhhheec-HHhhhccCCCCCCCCCCCcHHHHHHHHHHH
Q psy6547 81 EVQTGLGRTGKLLA----IHYEDVRPDIVILGKALS-GGLYPISAVLAD-DEVMGTLVPGTHGSTYGGNPLACKLAMTAL 154 (266)
Q Consensus 81 e~~~~~~~~g~~~~----~~~~~~~~d~~~~sK~~~-~g~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l 154 (266)
|+|.+|...+.... .+.......+.+|||.++ +| +|+||++++ +.+.+.+.... ..++.+.+++.++..++
T Consensus 181 e~Y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~gl~G-~RiG~lv~~~~~~~~~~~~~~--~~~~~~~~~q~~~~~~l 257 (354)
T PRK06358 181 EAFMDFLEENETISMINYLENFKNLIIIRAFTKFFAIPG-LRLGYGLTSNKNLAEKLLQMR--EPWSINTFADLAGQTLL 257 (354)
T ss_pred CcccccCCCccchhHHHhccCCCCEEEEEechhhccCcc-hhheeeecCCHHHHHHHHHhC--CCCcchHHHHHHHHHHh
Confidence 99988754332111 111222344555999999 99 999999874 56666665432 35677888888888877
Q ss_pred HHHhh-ccHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccC----
Q psy6547 155 DVILE-ENMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPI---- 229 (266)
Q Consensus 155 ~~~~~-~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~---- 229 (266)
+.-.- ++..+.++++++.+.+.|++ ++ .+.. ..+.|. |+|+.+++ ..+++++|.++||.++++
T Consensus 258 ~~~~~~~~~~~~~~~~r~~l~~~L~~-~~--~~~~-~~~~g~---f~~~~~~~-----~~~~~~~l~~~gI~v~~~~~f~ 325 (354)
T PRK06358 258 DDKEYIKKTIQWIKEEKDFLYNGLSE-FK--GIKV-YKPSVN---FIFFKLEK-----PIDLRKELLKKGILIRSCSNYR 325 (354)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhc-CC--CcEE-cCCcce---EEEEEcCc-----hHHHHHHHHHCCeEEEECCCCC
Confidence 53211 33556667777888888876 42 2222 234566 89988865 368999999999999975
Q ss_pred --CCCEEEEeccCCCCHHHHHHHHHHHHHHH
Q psy6547 230 --SNNIIRLSPALNITEQELREGLDIIINTI 258 (266)
Q Consensus 230 --~~~~iR~~~~~~~t~~~i~~~~~~l~~~~ 258 (266)
+.+++|++ ..++++.+++++.|++++
T Consensus 326 ~~~~~~iRls---~~~~~~~~~l~~~l~~~~ 353 (354)
T PRK06358 326 GLDENYYRVA---VKSREDNKKLLKALEVIL 353 (354)
T ss_pred CCCCCEEEEE---eCCHHHHHHHHHHHHHHh
Confidence 23689999 558899999999998765
No 171
>PTZ00376 aspartate aminotransferase; Provisional
Probab=99.87 E-value=1.9e-21 Score=171.15 Aligned_cols=237 Identities=14% Similarity=0.098 Sum_probs=161.7
Q ss_pred CCcCcccccCCCCCCceeecC---C----CHHHHHHHHhcC-CCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCE
Q psy6547 5 TDPTSYNEFGPHMPGYNIIPY---N----DVDALEAKLKSN-PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVL 76 (266)
Q Consensus 5 ~~~~~~~~~~~~~~~v~~~~~---~----d~~~l~~~l~~~-~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~ 76 (266)
++|.....+.-.+.+++.++. + |++++++.+++. ++.+++++++++||+|.+ ++.+.+++|.++|++||++
T Consensus 133 ~y~~~~~~~~~~G~~~~~v~l~~~~~~~~d~~~l~~~~~~~~~~~~~~~~~~p~NPTG~~-~s~~~~~~l~~~a~~~~~~ 211 (404)
T PTZ00376 133 TWPNHVNIFKSAGLNVKEYRYYDPKTKGLDFDGMLEDLRTAPNGSVVLLHACAHNPTGVD-PTEEQWKEIADVMKRKNLI 211 (404)
T ss_pred CchhHHHHHHHcCCceeeccccCcccCCcCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCC-CCHHHHHHHHHHHHhCCcE
Confidence 444555556777888888886 2 689999998653 345677777789989987 8999999999999999999
Q ss_pred EEEeccccCcCCcCc---c---ccccc-CCCCcCeeeeccccc-CCchhhhhh---eecHHhhhccC----CCCCCCCCC
Q psy6547 77 FIADEVQTGLGRTGK---L---LAIHY-EDVRPDIVILGKALS-GGLYPISAV---LADDEVMGTLV----PGTHGSTYG 141 (266)
Q Consensus 77 li~De~~~~~~~~g~---~---~~~~~-~~~~~d~~~~sK~~~-~g~~~~g~~---~~~~~~~~~~~----~~~~~~~~~ 141 (266)
||+||+|.+|...+. . ..+.. ......+.+|||.++ +| +|+||+ ++++++.+.+. ........+
T Consensus 212 ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~~vi~i~SfSK~~~~~G-lRvG~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 290 (404)
T PTZ00376 212 PFFDMAYQGFASGDLDKDAYAIRLFAERGVEFLVAQSFSKNMGLYG-ERIGALHIVCANKEEAANVLSQLKLIIRPMYSS 290 (404)
T ss_pred EEEehhhcCccCCCHHHHHHHHHHHHhcCCcEEEEEeCCCcccccc-cccceEEEEeCCHHHHHHHHHHHHHHHhhhcCC
Confidence 999999987744321 1 11111 112345566999999 99 999998 56776544332 111122223
Q ss_pred CcHHHHHHHHHHHHHHh--------hccHHHHHHHHHHHHHHHhhcccccC-CCcccEEecCccceeeEEEEeeCccchH
Q psy6547 142 GNPLACKLAMTALDVIL--------EENMIENAYKMGEIFRSELSSPANKS-KASFKLSSGGLKKSINTLILSVSAILEV 212 (266)
Q Consensus 142 ~~~~~~~a~~~~l~~~~--------~~~~~~~~~~~~~~l~~~l~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 212 (266)
.+++++.++..+++... ..+..++++++++.+.+.|++ .+.. .+....+..|. ++|+.+.
T Consensus 291 ~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~-~~~~~~~~~~~p~gg~---f~~~~~~------- 359 (404)
T PTZ00376 291 PPIHGARIADRILSDPELRAEWLSELKEMSGRIQNMRQLLYDELKA-LGSPGDWEHIINQIGM---FSFTGLT------- 359 (404)
T ss_pred CchHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCCcccccccCceE---EEecCCC-------
Confidence 46677888877775321 123445677888888888887 4321 12211234466 6776552
Q ss_pred HHHHHHHHHC-CceeccCCCCEEEEeccCCCCHHHHHHHHHHHHHHHH
Q psy6547 213 YDVCIKMKDA-GLVTKPISNNIIRLSPALNITEQELREGLDIIINTIN 259 (266)
Q Consensus 213 ~~~~~~l~~~-gi~~~~~~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~ 259 (266)
.+++++|.++ ||.+.|++ |++.+. .+++++++++++|++++.
T Consensus 360 ~~~~~~L~~~~~v~v~p~~----Ris~~~-~~~~~~~~~~~~l~~~~~ 402 (404)
T PTZ00376 360 KEQVERLIEKYHIYLLDNG----RISVAG-LTSKNVDYVAEAIHDVVR 402 (404)
T ss_pred HHHHHHHHHhCCEeecCCC----eEEEec-cCHHhHHHHHHHHHHHHh
Confidence 4688888866 99999873 998532 799999999999998865
No 172
>PLN02607 1-aminocyclopropane-1-carboxylate synthase
Probab=99.87 E-value=6.6e-21 Score=168.98 Aligned_cols=244 Identities=17% Similarity=0.112 Sum_probs=159.8
Q ss_pred CcCcccccC-CCCCCceeecC-------CCHHHHHHHHhc----CCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhc
Q psy6547 6 DPTSYNEFG-PHMPGYNIIPY-------NDVDALEAKLKS----NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQY 73 (266)
Q Consensus 6 ~~~~~~~~~-~~~~~v~~~~~-------~d~~~l~~~l~~----~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~ 73 (266)
+|.+...+. -.+.+++.|+. .|++++++++++ ..+++++++..++|++|.+ ++++.+++|.++|++|
T Consensus 154 Y~~f~~~~~~~~g~~vv~v~~~~~~~f~~~~~~le~a~~~a~~~~~~vk~lll~nP~NPtG~~-~s~e~l~~l~~~~~~~ 232 (447)
T PLN02607 154 YPGFDRDLRWRTGVKIVPIHCDSSNNFQVTPQALEAAYQEAEAANIRVRGVLITNPSNPLGAT-VQRSVLEDILDFVVRK 232 (447)
T ss_pred CcchHHHHHhcCCcEEEEEeCCCCCCCcCCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcCcc-cCHHHHHHHHHHHHHC
Confidence 344433343 34566777764 268899988854 2378888888788888877 9999999999999999
Q ss_pred CCEEEEeccccCcCCcCcccc-c-c---cC------CCCcCeeeeccccc-CCchhhhhhee-cHHhhhccCCCCCCCCC
Q psy6547 74 NVLFIADEVQTGLGRTGKLLA-I-H---YE------DVRPDIVILGKALS-GGLYPISAVLA-DDEVMGTLVPGTHGSTY 140 (266)
Q Consensus 74 g~~li~De~~~~~~~~g~~~~-~-~---~~------~~~~d~~~~sK~~~-~g~~~~g~~~~-~~~~~~~~~~~~~~~~~ 140 (266)
|+++|+||+|.++-..+..|. . . .. +....+.++||.|+ +| +|+||+++ ++.+.+.+... ....
T Consensus 233 ~i~lI~DEiYa~~~f~~~~f~S~~s~~~~~~~~~~~~~v~vi~s~SK~fg~~G-lRvG~ivs~n~~l~~~~~~~--~~~~ 309 (447)
T PLN02607 233 NIHLVSDEIYSGSVFSASEFVSVAEIVEARGYKGVAERVHIVYSLSKDLGLPG-FRVGTIYSYNDKVVTTARRM--SSFT 309 (447)
T ss_pred CCEEEEeccccccccCCCCcccHHHHHhhcCCCCCcCcEEEEEcchhcCCCCc-ceEEEEEEcCHHHHHHHHHH--hhcC
Confidence 999999999976422222121 1 0 11 11223445999999 99 99999998 56665555432 1111
Q ss_pred CCcHHHHHHHHHHHHHHh---h--ccHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCc----cch
Q psy6547 141 GGNPLACKLAMTALDVIL---E--ENMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSA----ILE 211 (266)
Q Consensus 141 ~~~~~~~~a~~~~l~~~~---~--~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~----~~~ 211 (266)
..+.+++.++...|+.-. . ...++++++..+.+.+.|++ . .+.......|+ |+|+.++... ...
T Consensus 310 ~~s~~~q~~~~~~L~d~~~~~~~l~~~r~~l~~~~~~~~~~L~~-~---gi~~~~~~ag~---fvw~~L~~~~~~~~~~~ 382 (447)
T PLN02607 310 LVSSQTQHLLASMLSDEEFTENYIRTNRERLRKRYEMIVQGLRR-A---GIECLKGNAGL---FCWMNLSPLLETPTREG 382 (447)
T ss_pred CCCHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHHh-C---CCCcccCCeeE---EEEEEchHhhcCCCchh
Confidence 346667776666654211 0 12344455555566666665 3 23331234578 9999986410 012
Q ss_pred HHHHHHHHHH-CCceeccC------CCCEEEEeccCCCCHHHHHHHHHHHHHHHHHH
Q psy6547 212 VYDVCIKMKD-AGLVTKPI------SNNIIRLSPALNITEQELREGLDIIINTINTM 261 (266)
Q Consensus 212 ~~~~~~~l~~-~gi~~~~~------~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~ 261 (266)
..++.++|++ +||.+.|+ .++++|++... .++++++++++||.+++++.
T Consensus 383 e~~l~~~ll~~~gV~v~pG~~f~~~~~g~fRi~fa~-~~~~~l~~gl~Ri~~~l~~~ 438 (447)
T PLN02607 383 ELALWDSILREVKLNISPGSSCHCSEPGWFRVCFAN-MSEDTLEVALKRIHRFMDRR 438 (447)
T ss_pred HHHHHHHHHHhCCEEEcCccccCCCCCCEEEEEecc-CCHHHHHHHHHHHHHHHHHH
Confidence 3467777765 69999986 25899999442 37999999999999998765
No 173
>PRK00950 histidinol-phosphate aminotransferase; Validated
Probab=99.87 E-value=2.3e-21 Score=168.22 Aligned_cols=219 Identities=15% Similarity=0.135 Sum_probs=147.9
Q ss_pred CCCCCCceeecC-----CCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCC
Q psy6547 14 GPHMPGYNIIPY-----NDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGR 88 (266)
Q Consensus 14 ~~~~~~v~~~~~-----~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~ 88 (266)
...+.+++.++. .|++++++.+ .+++++++++.++|++|.+. +.+++.++|+++|+++|+||+|.+|..
T Consensus 129 ~~~g~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~v~~~~p~nptG~~~----~~~~l~~l~~~~~~~li~De~y~~~~~ 202 (361)
T PRK00950 129 KAHGAKPVYAKREEDFSLDVDSVLNAI--TEKTKVIFLCTPNNPTGNLI----PEEDIRKILESTDALVFVDEAYVEFAE 202 (361)
T ss_pred HHcCCEEEEeecCCCCCcCHHHHHHHh--ccCCCEEEEeCCCCCCCCCc----CHHHHHHHHHHCCcEEEEECchhhhCc
Confidence 345666676652 2588888888 34577888777788899886 666778888899999999999987741
Q ss_pred cCcccc-cccCCCCcCeeeeccccc-CCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHhhccHHHHH
Q psy6547 89 TGKLLA-IHYEDVRPDIVILGKALS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENA 166 (266)
Q Consensus 89 ~g~~~~-~~~~~~~~d~~~~sK~~~-~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~ 166 (266)
+.... ....+....+.+|||.++ +| +|+||+++++++.+.+... ...+..+++++.++..+++. .++.++.
T Consensus 203 -~~~~~~~~~~~~vi~~~S~SK~~g~~G-lRiG~~~~~~~~~~~~~~~--~~~~~~~~~~~~~a~~~l~~---~~~~~~~ 275 (361)
T PRK00950 203 -YDYTPLALEYDNLIIGRTFSKVFGLAG-LRIGYGFVPEWLIDYYMRA--KTPFSLTRLSQAAAIAALSD---KEYIEKS 275 (361)
T ss_pred -cchHHHHHhcCCEEEEEeehHhhcCch-hhcchhcCCHHHHHHHHHh--cCCCCCCHHHHHHHHHHhcC---HHHHHHH
Confidence 11111 112222334456999998 89 9999999999988777642 33455677787777777642 2223333
Q ss_pred HHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccC------CCCEEEEeccC
Q psy6547 167 YKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPI------SNNIIRLSPAL 240 (266)
Q Consensus 167 ~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~------~~~~iR~~~~~ 240 (266)
.+..+..++.+.+.+. +.. .+..|. ++|+.+ + +.++.++++.|.++||.++++ +.+++|++++
T Consensus 276 ~~~~~~~r~~l~~~l~---~~~-~~~~~~---~i~~~~-~--~~~~~~~~~~l~~~gv~v~~~~~f~~~~~~~lRis~~- 344 (361)
T PRK00950 276 IEHGIKSREYLYNELP---FKV-YPSEAN---FVLVDV-T--PMTAKEFCEELLKRGVIVRDCTSFRGLGDYYIRVSIG- 344 (361)
T ss_pred HHHHHHHHHHHHhhcC---eeE-CCCcce---EEEEEC-C--CCCHHHHHHHHHHCCEEEeeCCccCCCCCCeEEEECC-
Confidence 3323333333332122 111 223456 899888 3 357889999999999999874 2468999944
Q ss_pred CCCHHHHHHHHHHHHHHH
Q psy6547 241 NITEQELREGLDIIINTI 258 (266)
Q Consensus 241 ~~t~~~i~~~~~~l~~~~ 258 (266)
+.++++++++.|++++
T Consensus 345 --~~~~~~~l~~~L~~il 360 (361)
T PRK00950 345 --TFEENERFLEILKEIV 360 (361)
T ss_pred --CHHHHHHHHHHHHHHh
Confidence 7889999999998865
No 174
>PRK05839 hypothetical protein; Provisional
Probab=99.87 E-value=1.8e-21 Score=169.59 Aligned_cols=227 Identities=13% Similarity=0.037 Sum_probs=152.0
Q ss_pred cccccCCCCCCceeecCC-----CHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccc
Q psy6547 9 SYNEFGPHMPGYNIIPYN-----DVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQ 83 (266)
Q Consensus 9 ~~~~~~~~~~~v~~~~~~-----d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~ 83 (266)
+...+...+.+++.++.+ +++..+..+ +++++++++.++|++|.+ ++.+.+++|+++|+++|++||+||+|
T Consensus 122 ~~~~~~~~g~~v~~v~~~~~~~~~~d~~~~~~---~~~k~v~i~nP~NPTG~~-~s~~~l~~i~~~~~~~~~~ii~DE~Y 197 (374)
T PRK05839 122 YEGAAIASRAKVLLMPLTKENDFTPSLNEKEL---QEVDLVILNSPNNPTGRT-LSLEELIEWVKLALKHDFILINDECY 197 (374)
T ss_pred hHHHHHhcCCEEEEeecccccCCcCCcchhhh---ccccEEEEeCCCCCcCcc-cCHHHHHHHHHHHHHcCCEEEeccch
Confidence 344455667788888753 122222223 257888888788889987 89999999999999999999999999
Q ss_pred cCcCCcCccccc-c--------cCCCCcCeeeeccccc-CCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHH
Q psy6547 84 TGLGRTGKLLAI-H--------YEDVRPDIVILGKALS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTA 153 (266)
Q Consensus 84 ~~~~~~g~~~~~-~--------~~~~~~d~~~~sK~~~-~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 153 (266)
.++...+...+. . .++....+.+|||.++ +| +|+||+++++++.+.+........++.+.+.+.++..+
T Consensus 198 ~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~SfSK~~~~~G-lRiG~ii~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~ 276 (374)
T PRK05839 198 SEIYENTPPPSLLEASILVGNESFKNVLVINSISKRSSAPG-LRSGFIAGDASILKKYKAYRTYLGCASPLPLQKAAAVA 276 (374)
T ss_pred hhcccCCCCCCHhhhhcccCccccCcEEEEeccccccCCcc-ceeEEEecCHHHHHHHHHHHhhcCCCCChHHHHHHHHH
Confidence 876322221111 1 1123344555999987 89 99999999998888776543334455666677776655
Q ss_pred HHHHh-hccHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHH-CCceeccC--
Q psy6547 154 LDVIL-EENMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKD-AGLVTKPI-- 229 (266)
Q Consensus 154 l~~~~-~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~-~gi~~~~~-- 229 (266)
+..-. -+.+.++++++++.+.+.| +.. .+..|. ++|+.+++ ..+++++|++ +||.+.|+
T Consensus 277 l~~~~~~~~~~~~~~~~~~~~~~~l----~~~-----~p~gg~---fi~~~~~~-----~~~~~~~l~~~~gi~v~pg~~ 339 (374)
T PRK05839 277 WLDDEHAEFFRNIYAKNLKLAREIL----GIT-----IPPATF---YVWLPVDN-----DEEFTKKLYQNEGIKVLPGSF 339 (374)
T ss_pred hccchHHHHHHHHHHHHHHHHHHhc----CCC-----CCCeeE---EEEEeCCC-----hHHHHHHHHHHCCEEEeCchh
Confidence 53200 0123444444444443332 211 233577 89988864 4678889874 99999985
Q ss_pred ------CCCEEEEeccCCCCHHHHHHHHHHHHHHHH
Q psy6547 230 ------SNNIIRLSPALNITEQELREGLDIIINTIN 259 (266)
Q Consensus 230 ------~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~ 259 (266)
..+++|++. ..+++++++++++|.++++
T Consensus 340 f~~~~~~~~~iRis~--~~~~~~~~~~l~~l~~~l~ 373 (374)
T PRK05839 340 LGRNGIGKGYVRIAL--VYDTPKLEKALEIIKTYLE 373 (374)
T ss_pred hCCCCCCCCeEEEEe--cCCHHHHHHHHHHHHHHhh
Confidence 147999995 4579999999999998874
No 175
>PRK13355 bifunctional HTH-domain containing protein/aminotransferase; Provisional
Probab=99.87 E-value=3.9e-21 Score=173.91 Aligned_cols=243 Identities=14% Similarity=0.126 Sum_probs=156.2
Q ss_pred CcCcccccCCCCCCceeecC-------CCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEE
Q psy6547 6 DPTSYNEFGPHMPGYNIIPY-------NDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFI 78 (266)
Q Consensus 6 ~~~~~~~~~~~~~~v~~~~~-------~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li 78 (266)
+|.........+.+++.++. .|++++++.+ .+++++++++.++|++|.+ ++.+.+++|+++|++||++||
T Consensus 242 y~~y~~~~~~~g~~~v~~~~~~~~~~~~d~~~l~~~~--~~~~k~i~i~nP~NPTG~v-~~~~~l~~i~~~a~~~~~~ii 318 (517)
T PRK13355 242 YPLWTACVNLAGGTAVHYRCDEQSEWYPDIDDIRSKI--TSRTKAIVIINPNNPTGAL-YPREVLQQIVDIAREHQLIIF 318 (517)
T ss_pred CcCHHHHHHHCCCEEEEeecCcccCCCCCHHHHHHhc--CcCceEEEEECCCCCCCcC-cCHHHHHHHHHHHHHcCcEEE
Confidence 33333334455667777653 3789999988 4567888877778889987 899999999999999999999
Q ss_pred EeccccCcCCcCcc-cccccC--CC-CcCeeeeccccc-CCchhhhhheec--HHh----hhccCCCCCCCCCCCcHHHH
Q psy6547 79 ADEVQTGLGRTGKL-LAIHYE--DV-RPDIVILGKALS-GGLYPISAVLAD--DEV----MGTLVPGTHGSTYGGNPLAC 147 (266)
Q Consensus 79 ~De~~~~~~~~g~~-~~~~~~--~~-~~d~~~~sK~~~-~g~~~~g~~~~~--~~~----~~~~~~~~~~~~~~~~~~~~ 147 (266)
+||+|..|...+.. .+.... +. ...+.+|||.++ +| +|+||++++ +++ .+.+.. .....++.+.+++
T Consensus 319 ~DE~Y~~~~~~~~~~~s~~~~~~~~~vi~~~S~SK~~~~~G-~RiG~~i~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~q 396 (517)
T PRK13355 319 SDEIYDRLVMDGLEHTSIASLAPDLFCVTFSGLSKSHMIAG-YRIGWMILSGNKRIAKDYIEGLNM-LANMRLCSNVPAQ 396 (517)
T ss_pred EehhhhhhcCCCCCcccHHHhCCCCeEEEEecchhhccCcc-cceEEEEeeCchhhHHHHHHHHHH-HhcCcCCcChHHH
Confidence 99999876433321 111111 11 112244899987 89 999999853 432 333321 1222345677788
Q ss_pred HHHHHHHHHHhh-ccHH---HHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCc--cchHHHHHH-HHH
Q psy6547 148 KLAMTALDVILE-ENMI---ENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSA--ILEVYDVCI-KMK 220 (266)
Q Consensus 148 ~a~~~~l~~~~~-~~~~---~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~--~~~~~~~~~-~l~ 220 (266)
.++..+|+.... +++. .++.++++++.+.|++ +. .+....+..++ ++|+.++... ..+..+++. .|.
T Consensus 397 ~a~~~aL~~~~~~~~~~~~~~~~~~~r~~l~~~L~~-~~--g~~~~~p~g~f---y~~~~l~~~~~~~~~~~~~~~~ll~ 470 (517)
T PRK13355 397 SIVQTALGGHQSVKDYLVPGGRVYEQRELVYNALNA-IP--GISAVKPKAAF---YIFPKIDVKKFNIHDDEQFALDLLH 470 (517)
T ss_pred HHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHhc-CC--CcccCCCCeee---EEEeecCcccCCCCCHHHHHHHHHH
Confidence 888877742110 1111 2334456777777776 42 23321233455 5666665310 013445554 567
Q ss_pred HCCceeccC------CCCEEEEeccCCCCHHHHHHHHHHHHHHHHHH
Q psy6547 221 DAGLVTKPI------SNNIIRLSPALNITEQELREGLDIIINTINTM 261 (266)
Q Consensus 221 ~~gi~~~~~------~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~ 261 (266)
++||.+.|+ ..+++|++. ..+++++++++++|.+++++.
T Consensus 471 ~~gV~v~pg~~F~~~~~~~~Ris~--~~~~~~l~~a~~rl~~~~~~~ 515 (517)
T PRK13355 471 DKKVLIVQGTGFNWDKPDHFRVVY--LPRLEDLEDAMDRLADFFSYY 515 (517)
T ss_pred hCCEEEeCcchhCCCCcCEEEEEe--CCCHHHHHHHHHHHHHHHHHh
Confidence 889999875 357999994 579999999999999998754
No 176
>PLN02721 threonine aldolase
Probab=99.87 E-value=8e-21 Score=164.24 Aligned_cols=234 Identities=15% Similarity=0.178 Sum_probs=152.2
Q ss_pred CCCCceeecC-----CCHHHHHHHHhcC-----CCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccC
Q psy6547 16 HMPGYNIIPY-----NDVDALEAKLKSN-----PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTG 85 (266)
Q Consensus 16 ~~~~v~~~~~-----~d~~~l~~~l~~~-----~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~ 85 (266)
.+.+++.++. .|++++++.+++. +++++++++++++++|+..++.+++++|.++|++||+++|+||+|.
T Consensus 103 ~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~l~~~~~np~G~~~~~~~l~~l~~l~~~~g~~livD~a~~- 181 (353)
T PLN02721 103 GGVHPRTVKNNEDGTMDLDAIEAAIRPKGDDHFPTTRLICLENTHANCGGRCLSVEYTDKVGELAKRHGLKLHIDGARI- 181 (353)
T ss_pred cCceeEecCCCcCCCcCHHHHHHHHHhccCCCCCcceEEEEeccccccCCccccHHHHHHHHHHHHHcCCEEEEEchhh-
Confidence 4556777764 3799999999642 5789999988776665555899999999999999999999999984
Q ss_pred cCC---cCcccccccCCCCcCeeeecccccCCchhhhh-heecHHhhhccCCCCCCCCCCCcHH--HHHHHHHHHHHHhh
Q psy6547 86 LGR---TGKLLAIHYEDVRPDIVILGKALSGGLYPISA-VLADDEVMGTLVPGTHGSTYGGNPL--ACKLAMTALDVILE 159 (266)
Q Consensus 86 ~~~---~g~~~~~~~~~~~~d~~~~sK~~~~g~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~--~~~a~~~~l~~~~~ 159 (266)
++. .+........+.+.-+.++||++++. +|+ +++++++++.+.........+.+.. .++++..+++...
T Consensus 182 ~~~~~~~~~~~~~~~~~~d~~~~s~sK~l~~~---~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~- 257 (353)
T PLN02721 182 FNASVALGVPVHRLVKAADSVSVCLSKGLGAP---VGSVIVGSKSFIRKAKRLRKTLGGGMRQVGVLAAAALVALQENV- 257 (353)
T ss_pred hcchhhhCCCHHHHhhhCCEEEEecccccCCc---eeeEEecCHHHHHhHHHHHHhcCCCeehhHHHHHHHHHHHHHHH-
Confidence 211 11110100113333355699999743 554 6678887766443211111111112 2223333343221
Q ss_pred ccHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccCCCCEEEEecc
Q psy6547 160 ENMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPISNNIIRLSPA 239 (266)
Q Consensus 160 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~iR~~~~ 239 (266)
+..++..++.+.+.+.|++ +....+.. ....+. ++++.++...+.+..+++++|.++||.+++.+.+++|++++
T Consensus 258 -~~~~~~~~~~~~l~~~L~~-~~~~~~~~-~~~~~~---~~~~~~~~~~~~~~~~~~~~L~~~gi~v~~~~~~~lR~~~~ 331 (353)
T PLN02721 258 -PKLEDDHKKAKLLAEGLNQ-IKGLRVNV-AAVETN---IVYFDITDGSRITAEKLCKSLEEHGVLLMPGNSSRIRVVTH 331 (353)
T ss_pred -HHHHHHHHHHHHHHHHHHh-CCCcEEec-CCccce---EEEEEccCCccccHHHHHHHHHhCCcEEecCCCceEEEEec
Confidence 1234445667788888877 43211111 112344 88888865112467889999999999999998899999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHH
Q psy6547 240 LNITEQELREGLDIIINTINT 260 (266)
Q Consensus 240 ~~~t~~~i~~~~~~l~~~~~~ 260 (266)
+.++++++++++++|++++..
T Consensus 332 ~~~~~~~i~~~~~~l~~~~~~ 352 (353)
T PLN02721 332 HQISDSDVQYTLSCFQQAALT 352 (353)
T ss_pred CcCCHHHHHHHHHHHHHHhhc
Confidence 899999999999999987653
No 177
>TIGR01265 tyr_nico_aTase tyrosine/nicotianamine aminotransferases. This subfamily of pyridoxal phosphate-dependent enzymes includes known examples of both tyrosine aminotransferase from animals and nicotianamine aminotransferase from barley.
Probab=99.87 E-value=6.1e-21 Score=167.84 Aligned_cols=235 Identities=17% Similarity=0.159 Sum_probs=160.5
Q ss_pred CCCCCCceeecC-------CCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCc
Q psy6547 14 GPHMPGYNIIPY-------NDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGL 86 (266)
Q Consensus 14 ~~~~~~v~~~~~-------~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~ 86 (266)
...+.+++.++. .|++++++++ .+++++++++.++|++|.+ ++.+.+++|.++|+++|+++|+||+|.+|
T Consensus 138 ~~~g~~~~~~~~~~~~~~~~d~~~l~~~~--~~~~~~v~i~~p~NPtG~~-~~~~~~~~i~~~a~~~~~~ii~De~y~~~ 214 (403)
T TIGR01265 138 AFSGLEVRLYDLLPEKDWEIDLDGLEALA--DEKTVAIVVINPSNPCGSV-FSRDHLQKIAEVARKLGIPIIADEIYGHM 214 (403)
T ss_pred HHcCCEEEEecCCcccCCccCHHHHHHHh--CcCccEEEEecCCCCCCCC-CCHHHHHHHHHHHHHCCCEEEEEcccccc
Confidence 344666666653 2688998888 4457778877778888876 89999999999999999999999999887
Q ss_pred CCcCccc-ccccCC---CCcCeeeeccccc-CCchhhhhheecH--H-----hhhccCCCCCCCCCCCcHHHHHHHHHHH
Q psy6547 87 GRTGKLL-AIHYED---VRPDIVILGKALS-GGLYPISAVLADD--E-----VMGTLVPGTHGSTYGGNPLACKLAMTAL 154 (266)
Q Consensus 87 ~~~g~~~-~~~~~~---~~~d~~~~sK~~~-~g~~~~g~~~~~~--~-----~~~~~~~~~~~~~~~~~~~~~~a~~~~l 154 (266)
...+..+ ...... ....+.+|||.++ +| +|+||++++. + +.+.+.... ..++..+.+.+.++..++
T Consensus 215 ~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~pG-lRiG~~v~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~q~~~~~~l 292 (403)
T TIGR01265 215 VFGDAPFIPMASFASIVPVLSLGGISKRWVVPG-WRLGWIIIHDPHGIFRDTVLQGLKNLL-QRILGPATIVQGALPDIL 292 (403)
T ss_pred ccCCCCccchhhhccCCcEEEEeecccccCCCc-ceEEEEEEeCchhhhHHHHHHHHHHHh-hhhcCCChHHHHHHHHHH
Confidence 5444221 211111 1233445999976 88 9999998742 2 333333221 123456788888888877
Q ss_pred HHHhh---ccHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCc---cchHHHHHHHH-HHCCceec
Q psy6547 155 DVILE---ENMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSA---ILEVYDVCIKM-KDAGLVTK 227 (266)
Q Consensus 155 ~~~~~---~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~---~~~~~~~~~~l-~~~gi~~~ 227 (266)
+.... ++.+++++++++.+.+.|+. .. .+....+..|+ ++|+.++... ..+..+++.+| .++||.+.
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~--~~~~~~p~~g~---f~~~~~~~~~~~~~~~~~~~~~~l~~~~gv~v~ 366 (403)
T TIGR01265 293 ENTPQEFFDGKISVLKSNAELCYEELKD-IP--GLVCPKPEGAM---YLMVKLELELFPEIKDDVDFCEKLVREESVICL 366 (403)
T ss_pred HhChHHHHHHHHHHHHHHHHHHHHHHhc-CC--CceecCCCcee---EEEEeccccccCCCCCHHHHHHHHHHhCCEEEe
Confidence 64111 23556666777777777776 32 22221234577 9999987520 12567888886 57899999
Q ss_pred cC----CCCEEEEeccCCCCHHHHHHHHHHHHHHHHHH
Q psy6547 228 PI----SNNIIRLSPALNITEQELREGLDIIINTINTM 261 (266)
Q Consensus 228 ~~----~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~ 261 (266)
|+ ..+++|++.. .+++++++++++|.++++++
T Consensus 367 pg~~f~~~~~iRis~~--~~~~~l~~~l~~l~~~~~~~ 402 (403)
T TIGR01265 367 PGSAFGLPNWVRITIT--VPESMLEEACSRIKEFCERH 402 (403)
T ss_pred CccccCCCCeEEEEec--CCHHHHHHHHHHHHHHHHhc
Confidence 86 3589999955 57899999999999988764
No 178
>TIGR03542 DAPAT_plant LL-diaminopimelate aminotransferase. This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). This clade includes characterized species in plants and Chlamydia. Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh).
Probab=99.87 E-value=3e-21 Score=169.73 Aligned_cols=226 Identities=13% Similarity=0.077 Sum_probs=149.7
Q ss_pred CceeecCCCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCc-ccccc-
Q psy6547 19 GYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGK-LLAIH- 96 (266)
Q Consensus 19 ~v~~~~~~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~-~~~~~- 96 (266)
+++.++.+.-+.+...+.+.+++++++++.++|++|.+ ++.+.+++|.++|++||++||+||+|.+|...+. .....
T Consensus 152 ~~~~v~~~~~~~~~~~~~~~~~~~~i~l~nP~NPTG~~-~s~~~~~~l~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~ 230 (402)
T TIGR03542 152 KITYLPCTKENNFIPDLPEEPKIDIIYLCSPNNPTGTV-LTKEQLKELVDYANEHGSLILFDAAYSAFISDPSLPHSIFE 230 (402)
T ss_pred eEEEeecchhhCCCCCccccCCceEEEEeCCCCCCCcc-CCHHHHHHHHHHHHHcCeEEEEEchhhhhccCCCCCcchhh
Confidence 66666653211121112122467888888888888987 9999999999999999999999999987743222 11111
Q ss_pred cC---CCCcCeeeeccccc-CCchhhhhheecHHhh--------hccCCCCCCCCCCCcHHHHHHHHHHHHHHh---hcc
Q psy6547 97 YE---DVRPDIVILGKALS-GGLYPISAVLADDEVM--------GTLVPGTHGSTYGGNPLACKLAMTALDVIL---EEN 161 (266)
Q Consensus 97 ~~---~~~~d~~~~sK~~~-~g~~~~g~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~---~~~ 161 (266)
.. +....+.+|||.++ +| +|+||++++++++ +...........+.+.+++.++..+++.-. ..+
T Consensus 231 ~~~~~~~vi~~~SfSK~~g~pG-lRiG~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~ 309 (402)
T TIGR03542 231 IPGAKECAIEFRSFSKTAGFTG-VRLGWTVVPKELTYADGHSVIQDWERRQCTKFNGASYPVQRAAEAAYAGEGLQPILE 309 (402)
T ss_pred CCCCcccEEEEecCccccCCCC-cceEEEEecHHHhhcchhhHHHHHHHHhhhcccCCCHHHHHHHHHHHcCcchhHHHH
Confidence 11 12334556999997 99 9999999998875 111111112223467778777766664211 112
Q ss_pred HHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHH-HCCceeccC------CCCEE
Q psy6547 162 MIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMK-DAGLVTKPI------SNNII 234 (266)
Q Consensus 162 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~-~~gi~~~~~------~~~~i 234 (266)
..+.++++++.+.+.|++ .+ +.......|. ++|+.++. ..+..+++++|+ ++||.+.|+ +.+++
T Consensus 310 ~~~~~~~~~~~~~~~L~~-~~---~~~~~~~~~~---f~~v~l~~--~~~~~~l~~~l~~~~gv~v~pg~~f~~~~~~~i 380 (402)
T TIGR03542 310 AISYYMENARILRKALEA-AG---FKVYGGEHAP---YLWVKTPE--GISSWDFFDFLLYQYHVVGTPGSGFGPSGEGFV 380 (402)
T ss_pred HHHHHHHHHHHHHHHHHh-cC---ceecCCCcee---EEEEECCC--CCCHHHHHHHHHHhCCEEEeCchhhCCCCCCEE
Confidence 345566677777777776 32 2220112466 99999876 556788999987 569999985 24799
Q ss_pred EEeccCCCCHHHHHHHHHHHHHH
Q psy6547 235 RLSPALNITEQELREGLDIIINT 257 (266)
Q Consensus 235 R~~~~~~~t~~~i~~~~~~l~~~ 257 (266)
|++ +..+++++++++++|.++
T Consensus 381 Ris--~~~~~~~l~~~l~~l~~~ 401 (402)
T TIGR03542 381 RFS--AFGKRENIVEACERIKEA 401 (402)
T ss_pred EEE--ecCCHHHHHHHHHHHHhh
Confidence 999 445899999999999875
No 179
>PRK07590 L,L-diaminopimelate aminotransferase; Validated
Probab=99.87 E-value=2.2e-21 Score=170.95 Aligned_cols=224 Identities=15% Similarity=0.115 Sum_probs=151.4
Q ss_pred ceeecCCCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCcc-ccccc-
Q psy6547 20 YNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKL-LAIHY- 97 (266)
Q Consensus 20 v~~~~~~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~-~~~~~- 97 (266)
++.++.+.-+.+...+. .+++++++++.++|++|.+ ++.+.+++|.++|++||++||+||+|.+|...+.. .....
T Consensus 157 ~~~v~~~~~~~~~~d~~-~~~~k~i~l~nP~NPTG~~-~s~~~~~~l~~~a~~~~~~iI~De~Y~~~~~~~~~~~~~~~~ 234 (409)
T PRK07590 157 IVYLPCTAENNFVPELP-EEKVDIIYLCFPNNPTGTV-LTKEQLKAWVDYAKENGSLILFDAAYEAFISDPSLPHSIYEI 234 (409)
T ss_pred eeEeecccccCCcccCc-ccCceEEEEeCCCCCcCCc-CCHHHHHHHHHHHHHcCeEEEEEccchhhccCCCCCcchhhC
Confidence 77776531112222222 2367888877778888887 99999999999999999999999999876433321 11111
Q ss_pred CC---CCcCeeeeccccc-CCchhhhhheecHHhhhccC-----------CCCCCCC-CCCcHHHHHHHHHHHHHH-h--
Q psy6547 98 ED---VRPDIVILGKALS-GGLYPISAVLADDEVMGTLV-----------PGTHGST-YGGNPLACKLAMTALDVI-L-- 158 (266)
Q Consensus 98 ~~---~~~d~~~~sK~~~-~g~~~~g~~~~~~~~~~~~~-----------~~~~~~~-~~~~~~~~~a~~~~l~~~-~-- 158 (266)
.+ ....+.+|||.++ +| +|+||+++++++++.+. ....... .+.+.+.+.++..+++.- .
T Consensus 235 ~~~~~~vi~~~SfSK~~~~pG-lRiG~~i~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~q~a~~~~l~~~~~~~ 313 (409)
T PRK07590 235 EGARECAIEFRSFSKTAGFTG-TRCAYTVVPKELKGKTSDGEGVSLNSLWNRRQSTKFNGVSYIVQRAAEAVYSPEGKAQ 313 (409)
T ss_pred CCcccceEEEecCccccCCcC-ceeEEEEcCHHHhhhccccchhhhHHHHHHHHhhcccCcCHHHHHHHHHHhcCCcHHH
Confidence 11 2334456999998 99 99999999998876321 0011222 246777887777766421 1
Q ss_pred hccHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHH-HCCceeccC------CC
Q psy6547 159 EENMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMK-DAGLVTKPI------SN 231 (266)
Q Consensus 159 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~-~~gi~~~~~------~~ 231 (266)
-+++.+.++++++.+.+.|+. .+ +.......|+ ++|+.++. ..+..+++.+|. ++||.+.|+ +.
T Consensus 314 ~~~~~~~~~~~r~~l~~~L~~-~~---~~~~~~~g~~---f~wi~~~~--~~~~~~~~~~l~~~~gv~v~pg~~f~~~~~ 384 (409)
T PRK07590 314 IKELIDYYMENAKIIREGLES-AG---FEVYGGVNAP---YIWVKTPD--GMSSWDFFDKLLQEANVVGTPGSGFGPSGE 384 (409)
T ss_pred HHHHHHHHHHHHHHHHHHHHh-cC---CceecCCcce---EEEEECCC--CCCHHHHHHHHHHHCCEEEeChhHhCCCCC
Confidence 123566677777777777776 32 2221123567 89999876 456788888886 569999875 24
Q ss_pred CEEEEeccCCCCHHHHHHHHHHHHHH
Q psy6547 232 NIIRLSPALNITEQELREGLDIIINT 257 (266)
Q Consensus 232 ~~iR~~~~~~~t~~~i~~~~~~l~~~ 257 (266)
+++|++ +..+++++++++++|.++
T Consensus 385 ~~iRi~--~~~~~~~l~~~l~rl~~~ 408 (409)
T PRK07590 385 GYFRLS--AFGSRENVLEAMERIKKA 408 (409)
T ss_pred CEEEEE--ccCCHHHHHHHHHHHHhh
Confidence 699999 456899999999999875
No 180
>PRK03321 putative aminotransferase; Provisional
Probab=99.87 E-value=5.1e-21 Score=165.50 Aligned_cols=223 Identities=18% Similarity=0.155 Sum_probs=156.0
Q ss_pred CCCCceeecCC-----CHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcC
Q psy6547 16 HMPGYNIIPYN-----DVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTG 90 (266)
Q Consensus 16 ~~~~v~~~~~~-----d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g 90 (266)
.+.+++.++.+ |++++++.++ +++++++++.++|++|.+ ++.+.+.++++.+ ++|+++|+||+|.+|...+
T Consensus 118 ~g~~~~~v~~~~~~~~~~~~l~~~~~--~~~~~v~l~~p~NPtG~~-~~~~~l~~l~~~~-~~~~~ii~De~y~~~~~~~ 193 (352)
T PRK03321 118 AGATPVQVPLTPDHTHDLDAMAAAIT--DRTRLIFVCNPNNPTGTV-VTPAELARFLDAV-PADVLVVLDEAYVEYVRDD 193 (352)
T ss_pred cCCEEEEccCCCCCCCCHHHHHHhhc--cCCCEEEEeCCCCCcCCC-cCHHHHHHHHHhC-CCCeEEEEechHHHhccCc
Confidence 46667777654 6889998883 367888887788889987 6666555555544 3699999999998764433
Q ss_pred cc-ccccc---CCCCcCeeeeccccc-CCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHhh-ccHHH
Q psy6547 91 KL-LAIHY---EDVRPDIVILGKALS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILE-ENMIE 164 (266)
Q Consensus 91 ~~-~~~~~---~~~~~d~~~~sK~~~-~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~-~~~~~ 164 (266)
.. ..... ......+.++||.++ +| +|+||+++++++++.+... ...++.+.+++.++.++++..+. .+..+
T Consensus 194 ~~~~~~~~~~~~~~vi~~~S~SK~~g~~G-lRiG~~v~~~~~~~~~~~~--~~~~~~s~~~q~~a~~~l~~~~~~~~~~~ 270 (352)
T PRK03321 194 DVPDGLELVRDHPNVVVLRTFSKAYGLAG-LRVGYAVGHPEVIAALRKV--AVPFSVNSLAQAAAIASLAAEDELLERVD 270 (352)
T ss_pred CCCcHHHHHhhCCCEEEEecchHHhhhHH-HhhhhhcCCHHHHHHHHHh--cCCCCCCHHHHHHHHHHhcCHHHHHHHHH
Confidence 21 11111 112223335999998 89 9999999999999888753 45677888898888877753221 12233
Q ss_pred HHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccCCCCEEEEeccCCCCH
Q psy6547 165 NAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITE 244 (266)
Q Consensus 165 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~iR~~~~~~~t~ 244 (266)
++.+.++.+.+.|++ .+ +.. .+..|. ++|+.++. +..+++++|.++||.+.+.+.+++|++ ..+.
T Consensus 271 ~~~~~r~~~~~~L~~-~~---~~~-~~~~g~---~i~i~l~~----~~~~~~~~l~~~gI~v~~~~~~~iRi~---~~~~ 335 (352)
T PRK03321 271 AVVAERDRVRAALRA-AG---WTV-PPSQAN---FVWLPLGE----RTADFAAAAAEAGVVVRPFAGEGVRVT---IGAP 335 (352)
T ss_pred HHHHHHHHHHHHHHH-CC---Ccc-CCCCCC---EEEEeCCC----CHHHHHHHHHHCCEEEEccCCCcEEEe---eCCH
Confidence 334444556666665 32 222 234577 99998854 467899999999999999777789999 3588
Q ss_pred HHHHHHHHHHHHHHHH
Q psy6547 245 QELREGLDIIINTINT 260 (266)
Q Consensus 245 ~~i~~~~~~l~~~~~~ 260 (266)
+++++++++|+++++.
T Consensus 336 ~~~~~~~~al~~~~~~ 351 (352)
T PRK03321 336 EENDAFLRAARAWRAG 351 (352)
T ss_pred HHHHHHHHHHHHHhcc
Confidence 9999999999987653
No 181
>TIGR02539 SepCysS Sep-tRNA:Cys-tRNA synthase. Aminoacylation of tRNA(Cys) with Cys, and cysteine biosynthesis in the process, happens in Methanocaldococcus jannaschii and several other archaea by misacylation of tRNA(Cys) with O-phosphoserine (Sep), followed by modification of the phosphoserine to cysteine. In some species, direct tRNA-cys aminoacylation also occurs but this pathway is required for Cys biosynthesis. Members of this protein catalyze the second step in this two step pathway, using pyridoxal phosphate and a sulfur donor to synthesize Cys from Sep while attached to the tRNA.
Probab=99.87 E-value=1.5e-20 Score=163.64 Aligned_cols=233 Identities=12% Similarity=0.080 Sum_probs=157.1
Q ss_pred CCCCCCceeecCC-------CHHHHHHHHhcC-----CCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEec
Q psy6547 14 GPHMPGYNIIPYN-------DVDALEAKLKSN-----PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADE 81 (266)
Q Consensus 14 ~~~~~~v~~~~~~-------d~~~l~~~l~~~-----~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De 81 (266)
...+.+++.++++ |+++|++.+++. +++++|+++.+++++|.+. ++++|.++|+++|+++|+||
T Consensus 108 ~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~lv~~~~p~~~~G~~~----~l~~i~~la~~~~~~livDe 183 (370)
T TIGR02539 108 ERAGLNVKEVPHTGHPEYKVDPEGYGEVIEEVEDESGKPPVLALLTHVDGEYGNLP----DAGKVAKVCREKGVPLLLNC 183 (370)
T ss_pred HHcCCEEEEEecCCcccCCcCHHHHHHHHHHhhhccCCCcEEEEEECCCCCCcccc----CHHHHHHHHHHcCCeEEEEC
Confidence 3456788888886 899999998531 2578888888888889876 89999999999999999999
Q ss_pred cccCcCCcCcccccccCCCCcCeeeecccccCCchhhhhheecHHhhhccCCCCCCCCC--------CCcHHHHHHHHHH
Q psy6547 82 VQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTY--------GGNPLACKLAMTA 153 (266)
Q Consensus 82 ~~~~~~~~g~~~~~~~~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~a~~~~ 153 (266)
+|+. +..+. ....++.+.-+.++||++++| .|+|++++++++++.+........+ +....++.++.++
T Consensus 184 a~~~-g~~~~--~~~~~~~di~v~s~sK~~~~~-g~~G~l~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 259 (370)
T TIGR02539 184 AYTV-GRMPV--SAKEIGADFIVGSGHKSMAAS-GPCGVLGMSEEWEDIVLRKSRYSPVKEVELLGCTSRGAPIVTMMAS 259 (370)
T ss_pred cccc-CCcCC--CHHHcCCCEEEeeCcccccCC-CCEEEEEECHHHHhhhcccccCCccceeeeecccccccHHHHHHHH
Confidence 9953 22221 111233344445599999977 6899999999998887754321111 1111244445555
Q ss_pred HHHHhh-ccHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCc------cchHHHHHHHHHHCCce-
Q psy6547 154 LDVILE-ENMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSA------ILEVYDVCIKMKDAGLV- 225 (266)
Q Consensus 154 l~~~~~-~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~------~~~~~~~~~~l~~~gi~- 225 (266)
++.... -+...+..++.+++++.|++ ++...+.. .++.++ |+.+.++... ..++..+.+.|+++||.
T Consensus 260 l~~~~~~l~~~~~~~~~~~~l~~~L~~-~g~~~~~~-~~s~t~---~v~~~~~~~~~~~~~~~~~~~~~~~~L~e~GI~~ 334 (370)
T TIGR02539 260 FPHVVERVKRWDEEVKKTRWFVAELED-IGFIQLGQ-KPKEHD---LVKFETPGFHEIAQKHKRRGYFLYEELKKRGIHG 334 (370)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcEEEcc-CCCcCc---eEEEECCchhHHhhhhccccHHHHHHHHhCCCcc
Confidence 554222 11223334445688888888 55322111 123344 8877765310 12355799999999998
Q ss_pred eccCCCCEEEEeccCCCCHHHHHHHHHHHHHHHHH
Q psy6547 226 TKPISNNIIRLSPALNITEQELREGLDIIINTINT 260 (266)
Q Consensus 226 ~~~~~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~ 260 (266)
++++..+++|++.+ ..++++++++++.|++++++
T Consensus 335 ir~~~~~~iRis~~-~~t~e~i~~l~~~L~~~~~~ 368 (370)
T TIGR02539 335 IRSGQTKYFKLSVY-GLTKEQVEYVVDSFEEIVEE 368 (370)
T ss_pred ccCCcceEEEEEec-CCCHHHHHHHHHHHHHHHHh
Confidence 77765679999974 57999999999999988765
No 182
>PRK08363 alanine aminotransferase; Validated
Probab=99.87 E-value=8.9e-21 Score=166.60 Aligned_cols=224 Identities=14% Similarity=0.105 Sum_probs=151.0
Q ss_pred CHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCcccc---cccCCCCcC
Q psy6547 27 DVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLA---IHYEDVRPD 103 (266)
Q Consensus 27 d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~~---~~~~~~~~d 103 (266)
|++++++.+ .+++++++++.++|++|.+ ++.+.+++|.++|+++|+++|+||+|.++...+.... .........
T Consensus 155 d~~~l~~~~--~~~~~~v~l~~p~NPtG~~-~~~~~~~~l~~~a~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~vi~ 231 (398)
T PRK08363 155 DIDDIRKKI--TEKTKAIAVINPNNPTGAL-YEKKTLKEILDIAGEHDLPVISDEIYDLMTYEGKHVSPGSLTKDVPVIV 231 (398)
T ss_pred CHHHHHhhC--CcceEEEEEECCCCCCCcC-cCHHHHHHHHHHHHHcCeEEEEhhhhhhhccCCcccCHHHcCcCCcEEE
Confidence 678888888 3467888887778888877 8999999999999999999999999977633332211 111111223
Q ss_pred eeeeccccc-CCchhhhhhee--cHHhhhccCCC---CCCCCCCCcHHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHH
Q psy6547 104 IVILGKALS-GGLYPISAVLA--DDEVMGTLVPG---THGSTYGGNPLACKLAMTALDVILE--ENMIENAYKMGEIFRS 175 (266)
Q Consensus 104 ~~~~sK~~~-~g~~~~g~~~~--~~~~~~~~~~~---~~~~~~~~~~~~~~a~~~~l~~~~~--~~~~~~~~~~~~~l~~ 175 (266)
+.+|||.++ +| +|+||+++ ++++.+.+... .....++.+.+++.++..+|+.... ++..++++++++.+.+
T Consensus 232 ~~SfSK~~~~~G-lRiG~~~~~~~~~~~~~l~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~l~~~~~~~~~~~~~l~~ 310 (398)
T PRK08363 232 MNGLSKVYFATG-WRLGYIYFVDPEGKLAEVREAIDKLARIRLCPNTPAQFAAIAGLTGPMDYLEEYMKKLKERRDYIYK 310 (398)
T ss_pred EecchhccCCcc-ceEEEEEEeCcHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHH
Confidence 445999976 88 99999987 65555443321 1112356778888888777753111 3456677778888888
Q ss_pred HhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHH-HHHHHCCceeccC------CCCEEEEeccCCCCHHHHH
Q psy6547 176 ELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVC-IKMKDAGLVTKPI------SNNIIRLSPALNITEQELR 248 (266)
Q Consensus 176 ~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~l~~~gi~~~~~------~~~~iR~~~~~~~t~~~i~ 248 (266)
.|++ ++ .+....+..|. ++|+.++.....+..+++ ..|.++||.+.|+ +.+++|++. ..++++++
T Consensus 311 ~L~~-~~--~~~~~~p~g~~---~~~~~l~~~~~~~~~~~~~~~l~~~gV~v~~g~~f~~~~~~~iRis~--~~~~~~l~ 382 (398)
T PRK08363 311 RLNE-IP--GISTTKPQGAF---YIFPRIEEGPWKDDKEFVLDVLHEAHVLFVHGSGFGEYGAGHFRLVF--LPPVEILE 382 (398)
T ss_pred HHhc-CC--CCEecCCCeEE---EEEEEeccCCCCCHHHHHHHHHHhCCEEEeCchhhCCCCCCeEEEEe--cCCHHHHH
Confidence 8877 42 22221223344 555566541111345565 4457899999875 247999995 46899999
Q ss_pred HHHHHHHHHHHHHh
Q psy6547 249 EGLDIIINTINTMA 262 (266)
Q Consensus 249 ~~~~~l~~~~~~~~ 262 (266)
+++++|++++++..
T Consensus 383 ~~l~~l~~~~~~~~ 396 (398)
T PRK08363 383 EAMDRFEEFMRERL 396 (398)
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999887754
No 183
>PTZ00377 alanine aminotransferase; Provisional
Probab=99.87 E-value=7.4e-21 Score=170.74 Aligned_cols=248 Identities=14% Similarity=0.104 Sum_probs=163.9
Q ss_pred CCcCcccccCCCCCCceeecC-------CCHHHHHHHHhcC----CCEEEEEEccccCCCCcccCChHHHHHHHHHHHhc
Q psy6547 5 TDPTSYNEFGPHMPGYNIIPY-------NDVDALEAKLKSN----PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQY 73 (266)
Q Consensus 5 ~~~~~~~~~~~~~~~v~~~~~-------~d~~~l~~~l~~~----~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~ 73 (266)
++|.+...+...+..++.++. .|+++|++.+... .++++++++.++|++|.+ ++.+.+++|+++|++|
T Consensus 172 ~y~~y~~~~~~~g~~~v~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~k~l~l~~P~NPTG~~-~s~e~~~~i~~~a~~~ 250 (481)
T PTZ00377 172 QYPLYSAAITLLGGKQVPYYLDEEKGWSLDQEELEEAYEQAVRNGITPRALVVINPGNPTGQV-LTRDVMEEIIKFCYEK 250 (481)
T ss_pred CchhHHHHHHHcCCEEEEEEeccccCCCCCHHHHHHHHHHHHhcCCCeeEEEEECCCCCCCcC-CCHHHHHHHHHHHHHC
Confidence 444444555667777888763 2579999998531 267877766678888887 9999999999999999
Q ss_pred CCEEEEeccccCcCCcC-ccc-cccc--CCC---------CcCeeeecccc-c-CCchhhhhhee---cHHhhhccCCCC
Q psy6547 74 NVLFIADEVQTGLGRTG-KLL-AIHY--EDV---------RPDIVILGKAL-S-GGLYPISAVLA---DDEVMGTLVPGT 135 (266)
Q Consensus 74 g~~li~De~~~~~~~~g-~~~-~~~~--~~~---------~~d~~~~sK~~-~-~g~~~~g~~~~---~~~~~~~~~~~~ 135 (266)
|++||+||+|..+...+ ..+ ++.. .++ ...+.+|||.+ + +| +|+||+++ ++++++.+....
T Consensus 251 ~~~iI~De~Y~~l~~~~~~~~~s~~~~~~~l~~~~~~~~~vi~~~S~SK~~~~~~G-lRiG~~~~~~~p~~li~~l~~~~ 329 (481)
T PTZ00377 251 GIVLMADEVYQENIYDGEKPFISFRKVLLELPAEYNTDVELVSFHSTSKGIIGECG-RRGGYFELTNIPPEVREQIYKLA 329 (481)
T ss_pred CCEEEEehhhHhhccCCCCCcccHHHHHHhhcccccCCeEEEEEecCCcccccCCc-CceEEEEEeCCCHHHHHHHHHHh
Confidence 99999999997753322 111 1100 011 12233499985 6 79 99999986 788887776533
Q ss_pred CCCCCCCcHHHHHHHHHHHHHH----------hh--ccHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEE
Q psy6547 136 HGSTYGGNPLACKLAMTALDVI----------LE--ENMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLI 203 (266)
Q Consensus 136 ~~~~~~~~~~~~~a~~~~l~~~----------~~--~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~ 203 (266)
...++.+++++.++..+++.. .. ..+.++++++++.+.+.|++ +. .+....+..|+ ++|+.
T Consensus 330 -~~~~~~~~~~Q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~rr~~l~~~L~~-~~--g~~~~~p~gg~---fl~~~ 402 (481)
T PTZ00377 330 -SINLCSNVVGQLMTGLMCNPPREGDASYPLYKRERDAIFTSLKRRAELLTDELNK-IE--GVSCQPVEGAM---YAFPR 402 (481)
T ss_pred -heecCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CC--CcEeecCCeeE---EEEee
Confidence 234467888888888887421 00 12333456677777777776 42 23331233467 77765
Q ss_pred EeeCccc----------hHHHHHH-HHHHCCceeccCC-------CCEEEEeccCCCCHHHHHHHHHHHHHHHHHHhh
Q psy6547 204 LSVSAIL----------EVYDVCI-KMKDAGLVTKPIS-------NNIIRLSPALNITEQELREGLDIIINTINTMAA 263 (266)
Q Consensus 204 ~~~~~~~----------~~~~~~~-~l~~~gi~~~~~~-------~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~~~ 263 (266)
+...... +..+++. .|.++||.+.|+. .+++|++.. .+++++++++++|.+++++.-+
T Consensus 403 ~~l~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pG~~F~~~~~~~~~Rls~~--~~~e~l~~~l~rl~~~~~~~~~ 478 (481)
T PTZ00377 403 IELPEKAIQEAKERGLAPDVLYCLELLESTGIVVVPGSGFGQKPGTYHFRITIL--PPEEQIEEMVKKIKEFHESFMK 478 (481)
T ss_pred ccCchhhHHHHHhcCCCcHHHHHHHHHHHcCEEEeCCcccCCCCCCCEEEEEEC--CCHHHHHHHHHHHHHHHHHHHH
Confidence 5311011 1234544 4557899998852 358999954 7889999999999999887543
No 184
>PRK04781 histidinol-phosphate aminotransferase; Provisional
Probab=99.87 E-value=7.5e-21 Score=165.04 Aligned_cols=225 Identities=16% Similarity=0.108 Sum_probs=159.4
Q ss_pred CCCCCCceeecCC--------CHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccC
Q psy6547 14 GPHMPGYNIIPYN--------DVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTG 85 (266)
Q Consensus 14 ~~~~~~v~~~~~~--------d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~ 85 (266)
...+.+++.++.. |++++.+.+. .+++++++++.++|++|.+ ++.+.++++++.|+ ++++||+||+|.+
T Consensus 119 ~~~g~~~~~v~~~~~~~~~~~d~~~l~~~~~-~~~~~lv~l~~p~NPTG~~-~~~~~~~~l~~~~~-~~~~iI~Deay~~ 195 (364)
T PRK04781 119 RLQNAPLVEVPLVDGADGFHADVPAIVAAAL-ASNAKLVFLCSPSNPAGSA-IALDQIERALQALQ-GKALVVVDEAYGE 195 (364)
T ss_pred HHcCCEEEEEecCCCccCCCcCHHHHHHHHh-ccCCeEEEEcCCCCCCCCC-cCHHHHHHHHHhCC-CCcEEEEeCcchh
Confidence 4456778888742 4566654442 3468888888888889987 78999999998885 4799999999987
Q ss_pred cCCcCcccc-cccCCCCcCeeeeccccc-CCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHh---hc
Q psy6547 86 LGRTGKLLA-IHYEDVRPDIVILGKALS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVIL---EE 160 (266)
Q Consensus 86 ~~~~g~~~~-~~~~~~~~d~~~~sK~~~-~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~---~~ 160 (266)
|........ .+..+....+-+|||.++ +| +|+||+++++++++.+... ...++.+.+++.++..+|+... ..
T Consensus 196 f~~~~~~~~~~~~~~~vi~~~SfSK~~gl~G-lRvGy~v~~~~l~~~l~~~--~~~~~~~~~~~~~a~~~l~~~~~~~~~ 272 (364)
T PRK04781 196 FSDVPSAVGLLARYDNLAVLRTLSKAHALAA-ARIGSLIANAELIAVLRRC--QAPYPVPTPCAALAEQALSAPALAVTA 272 (364)
T ss_pred hcCCcchHHHHhhCCCEEEEecChhhccccc-ceeeeeeCCHHHHHHHHhc--cCCCCCCHHHHHHHHHHHhcccHHHHH
Confidence 743211111 222223344455999999 99 9999999999999888753 3456678888887777775421 12
Q ss_pred cHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccCC-----CCEEE
Q psy6547 161 NMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPIS-----NNIIR 235 (266)
Q Consensus 161 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~-----~~~iR 235 (266)
+..+.++++++.+.+.|++ ++. +....++.|+ |+|+.+++ ..++.+.|.++||.++++. .+++|
T Consensus 273 ~~~~~~~~~r~~l~~~L~~-~~~--~~~~~p~~g~---f~~~~~~~-----~~~~~~~l~~~gI~v~~~~~~~~~~~~~R 341 (364)
T PRK04781 273 RRVAEVRAERERLHAALAQ-LPG--VRRVYPSQGN---FLLVRFDD-----AEAAFQALLAAGVVVRDQRAAPRLSDALR 341 (364)
T ss_pred HHHHHHHHHHHHHHHHHHh-CCC--CCeECCCCCc---EEEEEcCC-----HHHHHHHHHHCCeEEeeCCCCCCCCCeEE
Confidence 3344567777888888877 432 2111335578 99998854 5778999999999998752 47999
Q ss_pred EeccCCCCHHHHHHHHHHHHHHH
Q psy6547 236 LSPALNITEQELREGLDIIINTI 258 (266)
Q Consensus 236 ~~~~~~~t~~~i~~~~~~l~~~~ 258 (266)
++ ..++++++++++.|+++.
T Consensus 342 is---~~~~~~~~~l~~al~~~~ 361 (364)
T PRK04781 342 IT---LGTPEQNDRVLAALQRTQ 361 (364)
T ss_pred Ee---CCCHHHHHHHHHHHHHHH
Confidence 99 347889999999998764
No 185
>cd06451 AGAT_like Alanine-glyoxylate aminotransferase (AGAT) family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway.
Probab=99.87 E-value=3e-20 Score=160.91 Aligned_cols=228 Identities=14% Similarity=0.133 Sum_probs=161.8
Q ss_pred CCCCceeecC-----CCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcC
Q psy6547 16 HMPGYNIIPY-----NDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTG 90 (266)
Q Consensus 16 ~~~~v~~~~~-----~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g 90 (266)
.+.+++.++. .|++++++.+++ .+++++++.++++++|.+. ++++|.++|+++|+++++|++|. ++.
T Consensus 96 ~g~~~~~v~~~~~~~~~~~~l~~~i~~-~~~~~v~i~~~~~~~G~~~----~~~~i~~~a~~~~~~li~D~~~~-~g~-- 167 (356)
T cd06451 96 YGADVDVVEKPWGEAVSPEEIAEALEQ-HDIKAVTLTHNETSTGVLN----PLEGIGALAKKHDALLIVDAVSS-LGG-- 167 (356)
T ss_pred hCCCeEEeecCCCCCCCHHHHHHHHhc-cCCCEEEEeccCCCccccc----CHHHHHHHHHhcCCEEEEeeehh-ccC--
Confidence 4567777753 478999999943 2678888888888899886 79999999999999999999984 422
Q ss_pred cccccccCCCCcCeeeecccccCCchhhhhheecHHhhhccCC--CCC-----------------CCCCCCcHHHHHHHH
Q psy6547 91 KLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVP--GTH-----------------GSTYGGNPLACKLAM 151 (266)
Q Consensus 91 ~~~~~~~~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~--~~~-----------------~~~~~~~~~~~~a~~ 151 (266)
..+....++.+..+.+.+|+++++ .++|+++.++++.+.+.. ... ....+.++..+.++.
T Consensus 168 ~~~~~~~~~~d~~~~s~~K~l~~p-~g~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~ 246 (356)
T cd06451 168 EPFRMDEWGVDVAYTGSQKALGAP-PGLGPIAFSERALERIKKKTKPKGFYFDLLLLLKYWGEGYSYPHTPPVNLLYALR 246 (356)
T ss_pred ccccccccCccEEEecCchhccCC-CCcceeEECHHHHHHHHhcCCCCceeecHHHHHhhhcccCCCCCCChHHHHHHHH
Confidence 222333334333334468999976 678999999888766542 100 122344555566777
Q ss_pred HHHHHHhh---ccHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHC-Cceec
Q psy6547 152 TALDVILE---ENMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDA-GLVTK 227 (266)
Q Consensus 152 ~~l~~~~~---~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~-gi~~~ 227 (266)
++++.+.. +.+.++.+++.+++++.|++ ++...........+. ++++..+. +.+..+++++|.++ ||.++
T Consensus 247 aal~~l~~~~~~~~~~~~~~~~~~l~~~L~~-~g~~~~~~~~~~~~~---~~~~~~~~--~~~~~~~~~~L~~~~gI~~~ 320 (356)
T cd06451 247 EALDLILEEGLENRWARHRRLAKALREGLEA-LGLKLLAKPELRSPT---VTAVLVPE--GVDGDEVVRRLMKRYNIEIA 320 (356)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH-cCCeeccCcccCCCc---eEEEECCC--CCCHHHHHHHHHHhCCEEEe
Confidence 77777654 34678888899999999987 553222210111233 45566554 45688999999998 99998
Q ss_pred cC----CCCEEEEeccCCCCHHHHHHHHHHHHHHH
Q psy6547 228 PI----SNNIIRLSPALNITEQELREGLDIIINTI 258 (266)
Q Consensus 228 ~~----~~~~iR~~~~~~~t~~~i~~~~~~l~~~~ 258 (266)
++ .++++|++++..+|++++++++++|++++
T Consensus 321 ~g~~~~~~~~iRis~~~~~~~e~v~~~~~~l~~~~ 355 (356)
T cd06451 321 GGLGPTAGKVFRIGHMGEATREDVLGVLSALEEAL 355 (356)
T ss_pred cccccccCCEEEEecCCCCCHHHHHHHHHHHHHHh
Confidence 64 34689999999999999999999999875
No 186
>PRK05937 8-amino-7-oxononanoate synthase; Provisional
Probab=99.87 E-value=5.4e-20 Score=160.06 Aligned_cols=218 Identities=22% Similarity=0.273 Sum_probs=152.9
Q ss_pred CceeecCCCHHHHHHHHhcC----CCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEecccc-C-cCCcCcc
Q psy6547 19 GYNIIPYNDVDALEAKLKSN----PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQT-G-LGRTGKL 92 (266)
Q Consensus 19 ~v~~~~~~d~~~l~~~l~~~----~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~-~-~~~~g~~ 92 (266)
..+.++++|+++|++++++. +++.+|+++++++++|.+. ++++|.++|+++|+++++||+|+ | ++..|..
T Consensus 118 ~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~v~~v~s~~G~i~----pl~eI~~l~~~~~~~livDea~~~G~~g~~g~g 193 (370)
T PRK05937 118 WHQSFRHNDLDHLESLLESCRQRSFGRIFIFVCSVYSFKGTLA----PLEQIIALSKKYHAHLIVDEAHAMGIFGDDGKG 193 (370)
T ss_pred ceEEecCCCHHHHHHHHHhhhccCCCcEEEEEecCCCCCCCcc----CHHHHHHHHHHcCCEEEEECCccccccCCCCCc
Confidence 45667899999999999642 3466778899999999987 79999999999999999999995 3 4444433
Q ss_pred cccccCC---CCcCeeeecccccCCchhhhhheecHHhhhccC--CCCCCCCCCCcHHHHHHHHHHHHHHhhc--cHHHH
Q psy6547 93 LAIHYED---VRPDIVILGKALSGGLYPISAVLADDEVMGTLV--PGTHGSTYGGNPLACKLAMTALDVILEE--NMIEN 165 (266)
Q Consensus 93 ~~~~~~~---~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~a~~~~l~~~~~~--~~~~~ 165 (266)
+. ..++ ..+++.++||.+++. .+.+++.++..+.+. ......+.+.++...+++.++++.+... ...++
T Consensus 194 ~~-~~~~~~~~~~~~~tlsK~~g~~---G~~vl~~~~~~~~~~~~~~~~~~s~~~~~~~~~a~~aal~~l~~~~~~~~~~ 269 (370)
T PRK05937 194 FC-HSLGYENFYAVLVTYSKALGSM---GAALLSSSEVKQDLMLNSPPLRYSTGLPPHLLISIQVAYDFLSQEGELARKQ 269 (370)
T ss_pred hH-HhhCCCCCcEEEEechhhhhcC---ceEEEcCHHHHHHHHHhCCCCeecCCCCHHHHHHHHHHHHHHHhCcHHHHHH
Confidence 21 1222 236778899999842 223455555444332 1122333446777777888888887653 35667
Q ss_pred HHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccC---CCCEEEEeccCCC
Q psy6547 166 AYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPI---SNNIIRLSPALNI 242 (266)
Q Consensus 166 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~---~~~~iR~~~~~~~ 242 (266)
++++++++++.+.. .. .+. ...+.++. .+..++.+.|.++||.+... ..+++|++++..+
T Consensus 270 l~~l~~~l~~~l~~-~~----------~~~---~~~i~~~~---~~~~~~~~~L~~~gi~v~~~~~~~~~~iRis~~~~~ 332 (370)
T PRK05937 270 LFRLKEYFAQKFSS-AA----------PGC---VQPIFLPG---ISEQELYSKLVETGIRVGVVCFPTGPFLRVNLHAFN 332 (370)
T ss_pred HHHHHHHHHHhcCC-CC----------CCC---EEEEEeCC---hhHHHHHHHHHHCCeeEEeeCCCCCCEEEEEcCCCC
Confidence 77777777766653 11 122 22334433 24678899999999988742 2568999999999
Q ss_pred CHHHHHHHHHHHHHHHHHH
Q psy6547 243 TEQELREGLDIIINTINTM 261 (266)
Q Consensus 243 t~~~i~~~~~~l~~~~~~~ 261 (266)
|++|++++++.|++++++.
T Consensus 333 t~edid~l~~~L~~~~~~~ 351 (370)
T PRK05937 333 TEDEVDILVSVLATYLEKY 351 (370)
T ss_pred CHHHHHHHHHHHHHHHHHh
Confidence 9999999999999998765
No 187
>KOG1360|consensus
Probab=99.87 E-value=1.7e-20 Score=155.91 Aligned_cols=233 Identities=18% Similarity=0.208 Sum_probs=181.1
Q ss_pred cccCCCCCCceeecCCCHHHHHHHHhcCC--CEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccc-cC-c
Q psy6547 11 NEFGPHMPGYNIIPYNDVDALEAKLKSNP--NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQ-TG-L 86 (266)
Q Consensus 11 ~~~~~~~~~v~~~~~~d~~~l~~~l~~~~--~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~-~~-~ 86 (266)
++..-.+.+=..|+|||++.|+++|++.+ .++.|-.|.+++++|.+. ++++|++++++||.+-.+||+| .| |
T Consensus 272 ~GIrns~v~K~IFrHND~~hL~~lL~~~~~svPKivAFEtVhSM~Gavc----pleelcDvah~yGAiTFlDEVHAVGlY 347 (570)
T KOG1360|consen 272 QGIRNSRVPKHIFRHNDLDHLEQLLQSSPKSVPKIVAFETVHSMDGAVC----PLEELCDVAHKYGAITFLDEVHAVGLY 347 (570)
T ss_pred HHhhhcCCcceeeccCCHHHHHHHHHhCCCCCCceEEEeeeeccCCCcC----CHHHHHHHHHHhCceeeeehhhhhccc
Confidence 34444556667899999999999998744 578888999999999999 9999999999999999999999 33 4
Q ss_pred CCcCcccccccCCC--CcCeee--ecccccCCchhhhhheecHHhhhccCCCCCCCCC--CCcHHHHHHHHHHHHHHhhc
Q psy6547 87 GRTGKLLAIHYEDV--RPDIVI--LGKALSGGLYPISAVLADDEVMGTLVPGTHGSTY--GGNPLACKLAMTALDVILEE 160 (266)
Q Consensus 87 ~~~g~~~~~~~~~~--~~d~~~--~sK~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~a~~~~l~~~~~~ 160 (266)
|..|.+.. +..|+ ..||++ ++|+||.- .||+.++..+.+-++.+..+..| +..|..++.++++++++..+
T Consensus 348 G~rGaGvg-erdGvm~kvDiIsGTLgKafGcV---GGYIAat~~LvDmiRSyAaGFIFTTSLPP~vl~GAleaVr~lk~~ 423 (570)
T KOG1360|consen 348 GPRGAGVG-ERDGVMHKVDIISGTLGKAFGCV---GGYIAATRKLVDMIRSYAAGFIFTTSLPPMVLAGALEAVRILKSE 423 (570)
T ss_pred cCCCCCcc-ccCCcchhhhhcccchhhhcccc---cceehhhhhHHHHHHHhcCceEEecCCChHHHHhHHHHHHHHhhh
Confidence 55555422 33454 567776 99999832 45688888888877765433333 45677888999999998875
Q ss_pred ---cHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHH-HCCceecc-------C
Q psy6547 161 ---NMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMK-DAGLVTKP-------I 229 (266)
Q Consensus 161 ---~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~-~~gi~~~~-------~ 229 (266)
.+++.-+++..++++.|.+ ++-+.++. |+.++.+.+.+ ...+.+.++.|. ++||++.. .
T Consensus 424 eg~~lR~~hqrnv~~~kq~l~~-~GiPVi~~-------pSHIiPv~vgd--a~l~~~~sd~Li~~h~iYvQaINyPTV~r 493 (570)
T KOG1360|consen 424 EGRVLRRQHQRNVKYVKQLLME-LGIPVIPN-------PSHIIPVRVGD--AALAKQASDILISKHNIYVQAINYPTVAR 493 (570)
T ss_pred hhHHHHHHHHHHHHHHHHHHHH-cCCcccCC-------CcceeeeeccC--HHHHHHHHHHHHHhcCeEEEeccCCcccc
Confidence 2566667788888888888 65444443 55589999988 456778888886 77999863 3
Q ss_pred CCCEEEEeccCCCCHHHHHHHHHHHHHHHHHH
Q psy6547 230 SNNIIRLSPALNITEQELREGLDIIINTINTM 261 (266)
Q Consensus 230 ~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~ 261 (266)
+...+|+.|...+|++.++.+++.+..+++++
T Consensus 494 G~E~LRiaPTP~HT~~mm~~lv~~l~~vw~~v 525 (570)
T KOG1360|consen 494 GTERLRIAPTPHHTPQMMNILVNALLDVWNEV 525 (570)
T ss_pred cceeeecCCCCCCCHHHHHHHHHHHHHHHHHc
Confidence 67899999999999999999999999998875
No 188
>TIGR01141 hisC histidinol-phosphate aminotransferase. Histidinol-phosphate aminotransferase is a pyridoxal-phosphate dependent enzyme.
Probab=99.86 E-value=3e-21 Score=166.58 Aligned_cols=220 Identities=15% Similarity=0.143 Sum_probs=157.1
Q ss_pred CCCCCceeecC-----CCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCc
Q psy6547 15 PHMPGYNIIPY-----NDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRT 89 (266)
Q Consensus 15 ~~~~~v~~~~~-----~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~ 89 (266)
-.+.+++.++. .|++++++.+ .+++++++++.++|++|.+ ++.+.++++++.++ +|+++|+||+|.++...
T Consensus 114 ~~g~~~~~~~~~~~~~~d~~~l~~~~--~~~~~~v~l~~p~NptG~~-~~~~~~~~l~~~~~-~~~~ii~D~~y~~~~~~ 189 (346)
T TIGR01141 114 IHGAEVVKVPLDEDGQLDLEDILVAI--DDKPKLVFLCSPNNPTGNL-LSRSDIEAVLERTP-EDALVVVDEAYGEFSGE 189 (346)
T ss_pred HcCCeEEEeccCCCCCCCHHHHHHhc--CCCCCEEEEeCCCCCCCCC-CCHHHHHHHHHhCC-CCcEEEEECchhhhcCC
Confidence 35666777663 4789998877 4568889988888889887 67777777777665 69999999999876432
Q ss_pred Ccccc-cccCCCCcCeeeeccccc-CCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHh-hccHHHHH
Q psy6547 90 GKLLA-IHYEDVRPDIVILGKALS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVIL-EENMIENA 166 (266)
Q Consensus 90 g~~~~-~~~~~~~~d~~~~sK~~~-~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~-~~~~~~~~ 166 (266)
+.... .........+.++||+++ +| +|+||+++++++.+.+... ...++.+++++.++..+++... .+...+++
T Consensus 190 ~~~~~~~~~~~~~i~~~S~sK~~g~~G-~r~G~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 266 (346)
T TIGR01141 190 PSTLPLLAEYPNLIVLRTLSKAFGLAG-LRIGYAIANAEIIDALNKV--RAPFNLSRLAQAAAIAALRDDDFIEKTVEEI 266 (346)
T ss_pred ccHHHHHhhCCCEEEEehhhHhhhchh-hhceeeecCHHHHHHHHhc--cCCCCCCHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 22111 111111122335899996 78 9999999999988887753 2346668888888877775443 23466777
Q ss_pred HHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccCC-----CCEEEEeccCC
Q psy6547 167 YKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPIS-----NNIIRLSPALN 241 (266)
Q Consensus 167 ~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~-----~~~iR~~~~~~ 241 (266)
+++++.+++.|++ .. .+.. .+..|. ++|+.++. ++++++++|.++||.+.++. .+++|++++
T Consensus 267 ~~~~~~l~~~L~~-~~--g~~~-~~~~g~---~~~~~~~~----~~~~~~~~L~~~gI~v~~g~~f~~~~~~iRls~~-- 333 (346)
T TIGR01141 267 NAERERLYDGLKK-LP--GLEV-YPSDAN---FVLIRFPR----DADALFEALLEKGIIVRDLNSYPGLPNCLRITVG-- 333 (346)
T ss_pred HHHHHHHHHHHHh-cC--CCEE-CCCcCC---EEEEecCC----CHHHHHHHHHHCCeEEEeCCCcCCCCCeEEEecC--
Confidence 7888888888876 42 2222 223466 89998864 57889999999999999864 589999944
Q ss_pred CCHHHHHHHHHHHH
Q psy6547 242 ITEQELREGLDIII 255 (266)
Q Consensus 242 ~t~~~i~~~~~~l~ 255 (266)
++++++++++.|+
T Consensus 334 -~~~~i~~~~~~l~ 346 (346)
T TIGR01141 334 -TREENDRFLAALR 346 (346)
T ss_pred -CHHHHHHHHHHhC
Confidence 8899999998763
No 189
>PRK06836 aspartate aminotransferase; Provisional
Probab=99.86 E-value=1.5e-20 Score=164.84 Aligned_cols=231 Identities=19% Similarity=0.215 Sum_probs=162.4
Q ss_pred cCCCCCCceeecC------CCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHh------cCCEEEEe
Q psy6547 13 FGPHMPGYNIIPY------NDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQ------YNVLFIAD 80 (266)
Q Consensus 13 ~~~~~~~v~~~~~------~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~------~g~~li~D 80 (266)
+.-++.+++.++. .|++++++++ .++++++++++++|++|.+ ++.+.+++|.++|++ ||+++|+|
T Consensus 137 ~~~~g~~v~~v~~~~~~~~~d~~~l~~~~--~~~~~~v~~~~p~NPtG~~-~~~~~~~~l~~la~~~~~~~~~~~~ii~D 213 (394)
T PRK06836 137 VDNHGGKLVVVPTDTDTFQPDLDALEAAI--TPKTKAVIINSPNNPTGVV-YSEETLKALAALLEEKSKEYGRPIYLISD 213 (394)
T ss_pred HHHcCCEEEEEecCCccCcCCHHHHHhhc--CcCceEEEEeCCCCCCCcC-CCHHHHHHHHHHHHHhhhccCCCeEEEEe
Confidence 3445667777764 2689999998 4468888888888888877 899999999999999 89999999
Q ss_pred ccccCcCCcCccc--ccccCCCCcCeeeeccccc-CCchhhhhheecHHhhhc------cCCCCC-CCCCCCcHHHHHHH
Q psy6547 81 EVQTGLGRTGKLL--AIHYEDVRPDIVILGKALS-GGLYPISAVLADDEVMGT------LVPGTH-GSTYGGNPLACKLA 150 (266)
Q Consensus 81 e~~~~~~~~g~~~--~~~~~~~~~d~~~~sK~~~-~g~~~~g~~~~~~~~~~~------~~~~~~-~~~~~~~~~~~~a~ 150 (266)
|+|.++...+... .....+....+.++||.++ +| +|+||+++++++.+. +..... ......+++.+.++
T Consensus 214 e~y~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~pG-lRiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~ 292 (394)
T PRK06836 214 EPYREIVYDGAEVPYIFKYYDNSIVVYSFSKSLSLPG-ERIGYIAVNPEMEDADDLVAALVFANRILGFVNAPALMQRVV 292 (394)
T ss_pred ccccccccCCCCCCChHHccCcEEEEecchhhccCcc-eeeEEEecCHHHhhhHHHHHHHHHHhhccccccCCHHHHHHH
Confidence 9998774333211 1222233344455999999 89 999999998765322 110111 12234566777777
Q ss_pred HHHHHHHhhccHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccCC
Q psy6547 151 MTALDVILEENMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPIS 230 (266)
Q Consensus 151 ~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~ 230 (266)
...++. ....+.++++++.+.+.|++ .+ +....+..|. ++|+.++. .+..++++.|+++||.+.|+.
T Consensus 293 ~~~l~~---~~~~~~~~~~r~~l~~~L~~-~g---~~~~~~~gg~---~~~~~~~~---~~~~~~~~~l~~~gv~v~~g~ 359 (394)
T PRK06836 293 AKCLDA---TVDVSIYKRNRDLLYDGLTE-LG---FECVKPQGAF---YLFPKSPE---EDDVAFCEKAKKHNLLLVPGS 359 (394)
T ss_pred HHHhCC---hHHHHHHHHHHHHHHHHHHh-CC---CEeecCCceE---EEEEeCCC---CCHHHHHHHHHhCCEEEECch
Confidence 655542 22345667777778788776 43 2221233467 78877765 256788899999999999862
Q ss_pred ----CCEEEEeccCCCCHHHHHHHHHHHHHHHHHHh
Q psy6547 231 ----NNIIRLSPALNITEQELREGLDIIINTINTMA 262 (266)
Q Consensus 231 ----~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~~ 262 (266)
.+++|++++ .+++++++++++|++++++..
T Consensus 360 ~f~~~~~iRi~~~--~~~~~~~~~i~~l~~~l~~~~ 393 (394)
T PRK06836 360 GFGCPGYFRLSYC--VDTETIERSLPAFEKLAKEYK 393 (394)
T ss_pred hcCCCCeEEEEec--CCHHHHHHHHHHHHHHHHHhc
Confidence 479999965 689999999999999987653
No 190
>TIGR03392 FeS_syn_CsdA cysteine desulfurase, catalytic subunit CsdA. Members of this protein family are CsdS. This protein, found Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, and related to SufS, works together with and physically interacts with CsdE (a paralog of SufE). CsdA has cysteine desulfurase activity that is enhanced by CsdE, a sulfur acceptor protein. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems.
Probab=99.86 E-value=9.9e-20 Score=160.00 Aligned_cols=225 Identities=14% Similarity=0.167 Sum_probs=162.1
Q ss_pred CCCCCCceeecCC-----CHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCC
Q psy6547 14 GPHMPGYNIIPYN-----DVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGR 88 (266)
Q Consensus 14 ~~~~~~v~~~~~~-----d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~ 88 (266)
...+.+++.++.+ |++++++++ .++++++++..++|++|.+. ++++|.++|+++|+++++|++|+ ++.
T Consensus 128 ~~~g~~v~~v~~~~~~~~~~~~l~~~i--~~~t~lv~i~~~~n~tG~~~----~~~~i~~~~~~~~~~~ivD~a~~-~~~ 200 (398)
T TIGR03392 128 QQTGAKVVKLPIGADLLPDIRQLPELL--TPRTRILALGQMSNVTGGCP----DLARAITLAHQYGAVVVVDGAQG-VVH 200 (398)
T ss_pred HHcCcEEEEEecCCCCCcCHHHHHHHh--ccCceEEEEECccccccccC----CHHHHHHHHHHcCCEEEEEhhhh-cCC
Confidence 3456777887753 689999999 45689999988999999986 78999999999999999999995 221
Q ss_pred cCcccccccCCCCcCeeeec--ccccCCchhhhhheecHHhhhccCCCCCC---------------------CCCCCcHH
Q psy6547 89 TGKLLAIHYEDVRPDIVILG--KALSGGLYPISAVLADDEVMGTLVPGTHG---------------------STYGGNPL 145 (266)
Q Consensus 89 ~g~~~~~~~~~~~~d~~~~s--K~~~~g~~~~g~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~ 145 (266)
. ..... ...+|+.++| |.+++ .++|+++.++++.+.+.+...+ ..-+.+..
T Consensus 201 ~--~~~~~--~~~~d~~~~s~~K~~gp--~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~GT~~~~ 274 (398)
T TIGR03392 201 G--PPDVQ--ALDIDFYAFSGHKLYGP--TGIGVLYGKTELLEAMPPWQGGGKMLSHVSFDGFIPQAVPHRFEAGTPNIA 274 (398)
T ss_pred C--CCChh--hcCCCEEEEecccccCC--CceEEEEEcHHHHhhCCCeecCCceEeeccccccccCCChhhccCCCCCHH
Confidence 1 12222 2346777777 97763 3489999998887766532111 11144555
Q ss_pred HHHHHHHHHHHHhh---ccHHHHHHHHHHHHHHHhhccccc-CCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHH
Q psy6547 146 ACKLAMTALDVILE---ENMIENAYKMGEIFRSELSSPANK-SKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKD 221 (266)
Q Consensus 146 ~~~a~~~~l~~~~~---~~~~~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~ 221 (266)
+..++.++++.+.+ ++..++..++.+++++.|++ +.. .... ...+. +++|.++. .+++++.+.|.+
T Consensus 275 ~~~a~~~al~~l~~~g~~~i~~~~~~l~~~l~~~l~~-l~g~~~~~---~~~~~---i~~~~~~~---~~~~~l~~~L~~ 344 (398)
T TIGR03392 275 GVIGLSAALEWLTDIDIAAAEAWSVSLADLAEERLAQ-LPGFRSFR---CPGSS---LLAFDFAG---VHHSDLAALLAE 344 (398)
T ss_pred HHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhc-CCCeEEeC---CCCCc---EEEEEeCC---cCHHHHHHHHHh
Confidence 67777777777654 34667778888888888877 422 1111 11233 77777653 456889999999
Q ss_pred CCceeccCC------------CCEEEEeccCCCCHHHHHHHHHHHHHHHHHH
Q psy6547 222 AGLVTKPIS------------NNIIRLSPALNITEQELREGLDIIINTINTM 261 (266)
Q Consensus 222 ~gi~~~~~~------------~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~ 261 (266)
+||.++++. .+++|+|++..+|++|++++++.|+++++++
T Consensus 345 ~gI~v~~g~~~~~~~~~~~g~~~~iRvS~~~~~t~~ei~~l~~~l~~~~~~~ 396 (398)
T TIGR03392 345 SGIALRAGQHCAQPLMAALGVSGTLRASFAPYNTQQDVDALVDAVGAALELL 396 (398)
T ss_pred CCEEEecCccchHHHHHHhCCCCEEEEEeeccCCHHHHHHHHHHHHHHHHHh
Confidence 999998653 4689999999999999999999999988763
No 191
>PLN02397 aspartate transaminase
Probab=99.86 E-value=8.1e-21 Score=167.80 Aligned_cols=238 Identities=15% Similarity=0.072 Sum_probs=159.4
Q ss_pred cCCcCcccccCCCCCCceeecC-------CCHHHHHHHHhcC-CCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCC
Q psy6547 4 TTDPTSYNEFGPHMPGYNIIPY-------NDVDALEAKLKSN-PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNV 75 (266)
Q Consensus 4 ~~~~~~~~~~~~~~~~v~~~~~-------~d~~~l~~~l~~~-~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~ 75 (266)
.++|.....+...+.+++.++. .|++.+++.+++. +++++++++.++||+|.+ ++.+.+++|.++|++||+
T Consensus 150 P~y~~y~~~~~~~g~~~~~v~l~~~~~~~~d~~~l~~~l~~~~~~~~~i~~~~P~NPTG~v-~s~e~l~~i~~~a~~~~~ 228 (423)
T PLN02397 150 PTWGNHHNIFRDAGVPVRTYRYYDPKTRGLDFDGLLEDLKAAPDGSFVLLHACAHNPTGVD-PTPEQWEQISDLIKSKNH 228 (423)
T ss_pred CCchhHHHHHHHcCCeEEEeecccCcCCccCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCC-CCHHHHHHHHHHHHhCCc
Confidence 3444555555666778887754 2688888888543 456777788889999987 899999999999999999
Q ss_pred EEEEeccccCcCCcC---cccc---cccCC-CCcCeeeeccccc-CCchhhhhhe--e-cHHhhh----ccCCCCCCCCC
Q psy6547 76 LFIADEVQTGLGRTG---KLLA---IHYED-VRPDIVILGKALS-GGLYPISAVL--A-DDEVMG----TLVPGTHGSTY 140 (266)
Q Consensus 76 ~li~De~~~~~~~~g---~~~~---~~~~~-~~~d~~~~sK~~~-~g~~~~g~~~--~-~~~~~~----~~~~~~~~~~~ 140 (266)
+||+||+|.+|...+ .... +...+ ....+.+|||.++ +| ||+||++ + ++++.+ .+.........
T Consensus 229 ~vI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vI~~~SfSK~~~~~G-~RvG~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (423)
T PLN02397 229 LPFFDSAYQGFASGDLDADAQSVRMFVEDGHEILVAQSYAKNMGLYG-ERVGALSVVCKSADVAVRVKSQLKLIARPMYS 307 (423)
T ss_pred EEEEecccCCccCCchhhhhHHHHHHHhcCCcEEEEEECcccCCCcc-ccceEEEEEeCCHHHHHHHHHHHHHHHhcccC
Confidence 999999998874322 1111 11111 2334445999999 89 9999984 3 554433 23222222333
Q ss_pred CCcHHHHHHHHHHHHHHh--------hccHHHHHHHHHHHHHHHhhccccc-CCCcccEEecCccceeeEEEEeeCccch
Q psy6547 141 GGNPLACKLAMTALDVIL--------EENMIENAYKMGEIFRSELSSPANK-SKASFKLSSGGLKKSINTLILSVSAILE 211 (266)
Q Consensus 141 ~~~~~~~~a~~~~l~~~~--------~~~~~~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 211 (266)
+.+.+.+.++..+|+.-. -+++.++++++++.+.+.|++ ++. ..+....+..|+ |+|+.+.
T Consensus 308 ~~~~~~q~~~~~~L~~~~~~~~~~~~~~~~~~~~~~rr~~l~~~L~~-~~~~~~~~~~~p~gg~---fl~~~l~------ 377 (423)
T PLN02397 308 NPPIHGASIVATILGDPELFSEWTKELKGMADRIISMRQKLYDALEA-RGSPGDWSHITKQIGM---FSFTGLN------ 377 (423)
T ss_pred CCcHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCCCCCcccCCceE---EEecCCC------
Confidence 456667777776664311 134566788888888888888 441 112221234566 6776652
Q ss_pred HHHHHHHHH-HCCceeccCCCCEEEEeccCCCCHHHHHHHHHHHHHHHH
Q psy6547 212 VYDVCIKMK-DAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTIN 259 (266)
Q Consensus 212 ~~~~~~~l~-~~gi~~~~~~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~ 259 (266)
.+++++|+ ++||.+.+.+ |+++. ..+++++++++++|.++++
T Consensus 378 -~~~~~~Ll~~~~V~v~~~~----Ri~~~-~~~~~~i~~~~~~i~~~~~ 420 (423)
T PLN02397 378 -KEQVDRMTKEYHIYMTRDG----RISMA-GLSSKNVPYLADAIHAVVT 420 (423)
T ss_pred -HHHHHHHHHhCCEEECCCC----eEEEe-eCCHHHHHHHHHHHHHHHh
Confidence 34888886 6699997543 88843 3799999999999999975
No 192
>PRK09265 aminotransferase AlaT; Validated
Probab=99.86 E-value=1.9e-20 Score=164.75 Aligned_cols=233 Identities=16% Similarity=0.114 Sum_probs=154.1
Q ss_pred CCCCceeecC-------CCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCC
Q psy6547 16 HMPGYNIIPY-------NDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGR 88 (266)
Q Consensus 16 ~~~~v~~~~~-------~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~ 88 (266)
.+.+++.++. .|++++++.+ .+++++++++.++|++|.+ ++.+.+++|.++|+++|++||+||+|.++..
T Consensus 139 ~g~~~v~~~~~~~~~~~~d~~~l~~~~--~~~~~~v~l~~P~NPtG~~-~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~ 215 (404)
T PRK09265 139 SGGKPVHYLCDEEAGWFPDLDDIRSKI--TPRTKAIVIINPNNPTGAV-YSKELLEEIVEIARQHNLIIFADEIYDKILY 215 (404)
T ss_pred cCCEEEEEecccccCCCCCHHHHHHhc--cccceEEEEECCCCCCCcC-CCHHHHHHHHHHHHHCCCEEEEehhhhhccC
Confidence 4555665542 2678898888 3467777766678888876 8999999999999999999999999987643
Q ss_pred cCcc-cccccC-C--CCcCeeeeccccc-CCchhhhhhee--cHH----hhhccCCCCCCCCCCCcHHHHHHHHHHHHHH
Q psy6547 89 TGKL-LAIHYE-D--VRPDIVILGKALS-GGLYPISAVLA--DDE----VMGTLVPGTHGSTYGGNPLACKLAMTALDVI 157 (266)
Q Consensus 89 ~g~~-~~~~~~-~--~~~d~~~~sK~~~-~g~~~~g~~~~--~~~----~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~ 157 (266)
.+.. ...... . ....+.+|||.++ +| +|+||+++ ++. +.+.+.. ....+++.+.+++.++..+|...
T Consensus 216 ~~~~~~~~~~~~~~~~vi~~~S~SK~~~~pG-lRiG~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~q~~~~~~l~~~ 293 (404)
T PRK09265 216 DGAVHISIASLAPDLLCVTFNGLSKAYRVAG-FRVGWMVLSGPKKHAKGYIEGLDM-LASMRLCANVPAQHAIQTALGGY 293 (404)
T ss_pred CCCCcCCHHHcCCCceEEEEecchhhccCcc-cceEEEEEeCchHHHHHHHHHHHH-HhccccCCCcHHHHHHHHHhcCc
Confidence 3321 111111 1 1223344999996 89 99999986 333 3333321 12234566778888887777422
Q ss_pred hh-ccHH---HHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCc---cchHHHHHHHHHHCCceeccC-
Q psy6547 158 LE-ENMI---ENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSA---ILEVYDVCIKMKDAGLVTKPI- 229 (266)
Q Consensus 158 ~~-~~~~---~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~---~~~~~~~~~~l~~~gi~~~~~- 229 (266)
+. ..+. +++.++++.+.+.|++ +. .+....+..|+ ++|+.++... ..+.+.+...|.++||.+.|+
T Consensus 294 ~~~~~~~~~~~~~~~~r~~~~~~L~~-~~--~~~~~~p~~g~---~l~~~~~~~~~~~~~~~~~~~~~l~~~gv~v~pg~ 367 (404)
T PRK09265 294 QSINELILPGGRLYEQRDRAWELLNA-IP--GVSCVKPKGAL---YAFPKLDPKVYPIHDDEQFVLDLLLQEKVLLVQGT 367 (404)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhc-CC--CCcccCCCcce---EEEEEecccccCCCCHHHHHHHHHHhCCEEEECch
Confidence 11 1121 3455666777777766 42 23321344577 8888886521 113445677788999999875
Q ss_pred -----CCCEEEEeccCCCCHHHHHHHHHHHHHHHHHH
Q psy6547 230 -----SNNIIRLSPALNITEQELREGLDIIINTINTM 261 (266)
Q Consensus 230 -----~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~ 261 (266)
..+++|++. ..+++++++++++|.++++..
T Consensus 368 ~F~~~~~~~~Ri~~--~~~~e~l~~~l~rl~~~l~~~ 402 (404)
T PRK09265 368 GFNWPEPDHFRIVT--LPRVDDLEEAIGRIGRFLSGY 402 (404)
T ss_pred hhCCCCCCeEEEEe--CCCHHHHHHHHHHHHHHHHHh
Confidence 247999995 478999999999999988753
No 193
>PRK14807 histidinol-phosphate aminotransferase; Provisional
Probab=99.86 E-value=2e-20 Score=161.68 Aligned_cols=220 Identities=13% Similarity=0.105 Sum_probs=153.3
Q ss_pred CCCCCCceeecC-----CCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCC
Q psy6547 14 GPHMPGYNIIPY-----NDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGR 88 (266)
Q Consensus 14 ~~~~~~v~~~~~-----~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~ 88 (266)
.-.+.+++.++. .|++++++.++.. +++++++++++|++|.+. + .+++.+++++++.++|+||+|.+|.
T Consensus 118 ~~~g~~~~~v~~~~~~~~d~~~l~~~~~~~-~~k~v~l~~p~NPtG~~~-~---~~~l~~l~~~~~~~~ivDe~y~~~~- 191 (351)
T PRK14807 118 KIAGAVEIPVKLKEDYTYDVGSFIKVIEKY-QPKLVFLCNPNNPTGSVI-E---REDIIKIIEKSRGIVVVDEAYFEFY- 191 (351)
T ss_pred HHcCCeEEEeecCCCCCCCHHHHHHHhhcc-CCCEEEEeCCCCCCCCCC-C---HHHHHHHHHhCCCEEEEeCcchhhc-
Confidence 345667777764 2688999988432 678888888889999884 4 5556666677788899999997763
Q ss_pred cCccc--ccccCCCCcCeeeeccccc-CCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHhhccHHHH
Q psy6547 89 TGKLL--AIHYEDVRPDIVILGKALS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIEN 165 (266)
Q Consensus 89 ~g~~~--~~~~~~~~~d~~~~sK~~~-~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~ 165 (266)
+... .....+....+.+|||.++ +| +|+||+++++++.+.+..... .+..+.+++.++..+++...-++..++
T Consensus 192 -~~~~~~~~~~~~~vi~~~S~SK~~~~~G-lRiG~~v~~~~~~~~~~~~~~--~~~~~~~~q~~~~~~l~~~~~~~~~~~ 267 (351)
T PRK14807 192 -GNTIVDVINEFENLIVLRTLSKAFGLAG-LRVGYAVANENILKYLNLVKS--PYNINSLSQVIALKVLRTGVLKERVNY 267 (351)
T ss_pred -ccchHHHhhhCCCEEEEecchHhcccch-hceeeeecCHHHHHHHHHccC--CCCcCHHHHHHHHHHHhHHHHHHHHHH
Confidence 2211 1222233444555999998 99 999999999999887764332 355678888888877764222344556
Q ss_pred HHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccCC-----CCEEEEeccC
Q psy6547 166 AYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPIS-----NNIIRLSPAL 240 (266)
Q Consensus 166 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~-----~~~iR~~~~~ 240 (266)
++++++.+.+.|++ +. .+.. .++.|. ++|+.+++ ..++++.|.++||.+++.. .+++|+++
T Consensus 268 ~~~~r~~l~~~l~~-~~--g~~~-~~~~~~---~~~i~~~~-----~~~~~~~l~~~gV~v~~~~~~~~~~~~iRis~-- 333 (351)
T PRK14807 268 ILNERERLIKELSK-IP--GIKV-YPSKTN---FILVKFKD-----ADYVYQGLLERGILVRDFSKVEGLEGALRITV-- 333 (351)
T ss_pred HHHHHHHHHHHHHh-CC--CcEE-CcCCcc---EEEEEcCC-----HHHHHHHHHHCCEEEEECCCCCCCCCeEEEEc--
Confidence 66777777777765 32 2222 234566 88877754 5789999999999997642 47899993
Q ss_pred CCCHHHHHHHHHHHHHHH
Q psy6547 241 NITEQELREGLDIIINTI 258 (266)
Q Consensus 241 ~~t~~~i~~~~~~l~~~~ 258 (266)
.+.++.+++++.|++++
T Consensus 334 -~~~~~~~~l~~~l~~~~ 350 (351)
T PRK14807 334 -SSCEANDYLINGLKELL 350 (351)
T ss_pred -CCHHHHHHHHHHHHHhh
Confidence 36788899999888754
No 194
>cd06454 KBL_like KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life.
Probab=99.86 E-value=3.5e-20 Score=159.95 Aligned_cols=229 Identities=18% Similarity=0.192 Sum_probs=162.3
Q ss_pred cCCCCCCceeecCCCHHHHHHHHhcC---CCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEecccc-C-cC
Q psy6547 13 FGPHMPGYNIIPYNDVDALEAKLKSN---PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQT-G-LG 87 (266)
Q Consensus 13 ~~~~~~~v~~~~~~d~~~l~~~l~~~---~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~-~-~~ 87 (266)
....+.+++.++..|.+++++++++. +++++++++++++++|.+. ++++|.++|+++|+++|+||+|. + ++
T Consensus 102 ~~~~g~~~~~~~~~~~~~le~~i~~~~~~~~~~~v~~~~~~~~tG~~~----~~~~i~~~~~~~~~~livD~a~~~g~~~ 177 (349)
T cd06454 102 IRLSGAKKRIFKHNDMEDLEKLLREARRPYGKKLIVTEGVYSMDGDIA----PLPELVDLAKKYGAILFVDEAHSVGVYG 177 (349)
T ss_pred HHHcCCceEEecCCCHHHHHHHHHHhhccCCCeEEEEeccccCCCCcc----CHHHHHHHHHHcCCEEEEEccccccccC
Confidence 34456778888888999999999753 3678888999999999875 79999999999999999999994 2 21
Q ss_pred CcCccc---ccccCCCCcCeeeecccccCCchhhhhheecHHhhhccCCCC--CCCCCCCcHHHHHHHHHHHHHHhh-cc
Q psy6547 88 RTGKLL---AIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGT--HGSTYGGNPLACKLAMTALDVILE-EN 161 (266)
Q Consensus 88 ~~g~~~---~~~~~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~a~~~~l~~~~~-~~ 161 (266)
..+... .....+.+..+.+++|++++ +.|+++.++++++.+.... ...+.+.++..++++.++++.+.. ++
T Consensus 178 ~~~~~~~~~~~~~~~~~i~~~s~sK~~~~---~gG~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~ 254 (349)
T cd06454 178 PHGRGVEEFGGLTDDVDIIMGTLGKAFGA---VGGYIAGSKELIDYLRSYARGFIFSTSLPPAVAAAALAALEVLQGGPE 254 (349)
T ss_pred CCCCChhhhccccccCcEEEeechhhhcc---cCCEEECCHHHHHHHHHhchhhhccCCCCHHHHHHHHHHHHHHhcCHH
Confidence 222211 11122333334469999974 3578888888876654322 122235667778888888887755 55
Q ss_pred HHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccC-------CCCEE
Q psy6547 162 MIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPI-------SNNII 234 (266)
Q Consensus 162 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~-------~~~~i 234 (266)
..+++.++++.+.+.|.+ ++...... ..+. ++++..++ ..++.++.++|.++||.+.+. +.+++
T Consensus 255 ~~~~~~~~~~~l~~~l~~-~g~~~~~~---~~~~---~~~~~~~~--~~~~~~~~~~L~~~gI~~~~~~~~~~~~~~~~i 325 (349)
T cd06454 255 RRERLQENVRYLRRGLKE-LGFPVGGS---PSHI---IPPLIGDD--PAKAVAFSDALLERGIYVQAIRYPTVPRGTARL 325 (349)
T ss_pred HHHHHHHHHHHHHHHHHh-cCCcccCC---CCCc---EEEEeCCC--hHHHHHHHHHHHhCCceEEEecCCccCCCCCeE
Confidence 788888999999998887 54322211 1233 34444432 346788999999999998752 24789
Q ss_pred EEeccCCCCHHHHHHHHHHHHHH
Q psy6547 235 RLSPALNITEQELREGLDIIINT 257 (266)
Q Consensus 235 R~~~~~~~t~~~i~~~~~~l~~~ 257 (266)
|++++..++++++++++++|+++
T Consensus 326 Ri~~~~~~~~~~i~~~~~~l~~~ 348 (349)
T cd06454 326 RISLSAAHTKEDIDRLLEALKEV 348 (349)
T ss_pred EEEEeCCCCHHHHHHHHHHHHHh
Confidence 99999989999999999999764
No 195
>PRK04870 histidinol-phosphate aminotransferase; Provisional
Probab=99.86 E-value=1.2e-20 Score=163.45 Aligned_cols=221 Identities=14% Similarity=0.116 Sum_probs=156.7
Q ss_pred cCCCCCCceeecCC-----CHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcC
Q psy6547 13 FGPHMPGYNIIPYN-----DVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLG 87 (266)
Q Consensus 13 ~~~~~~~v~~~~~~-----d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~ 87 (266)
+.-.+.+++.++.+ |++++++.++++ +++++++++++|++|.+ ++.+.+++|+++| ++++|+||+|.+|.
T Consensus 122 ~~~~g~~~~~i~~~~~~~~d~~~l~~~~~~~-~~~~v~l~~p~NPtG~~-~~~~~~~~i~~~~---~~~ii~De~y~~~~ 196 (356)
T PRK04870 122 AKLAGLEFVGVPLTADFTLDLPAMLAAIAEH-RPALVFLAYPNNPTGNL-FDDADVERIIEAA---PGLVVVDEAYQPFA 196 (356)
T ss_pred HHHcCCEEEEecCCCCCCCCHHHHHHHhhcC-CCCEEEEcCCCCCCCCC-CCHHHHHHHHHHC---CCEEEEECCchhhc
Confidence 34556777777643 689999998533 67888887778888887 7888888888887 78899999998774
Q ss_pred CcCcccccccCCCCcCeeeeccccc-CCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHhh-ccHHHH
Q psy6547 88 RTGKLLAIHYEDVRPDIVILGKALS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILE-ENMIEN 165 (266)
Q Consensus 88 ~~g~~~~~~~~~~~~d~~~~sK~~~-~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~-~~~~~~ 165 (266)
...........+....+.++|| ++ +| +|+||+++++++++.+.... ..++.+.+++.++..+++..+. ++..++
T Consensus 197 ~~~~~~~~~~~~~vi~~~S~SK-~~~~G-lRiG~~i~~~~~i~~~~~~~--~~~~~~~~~q~~a~~~l~~~~~~~~~~~~ 272 (356)
T PRK04870 197 GDSWLPRLARFPNLLVMRTVSK-LGLAG-LRLGYLAGHPAWIAELDKVR--PPYNVNVLTQATALFALEHVDVLDAQAAQ 272 (356)
T ss_pred CcchHHHHhhCCCEEEEecchh-hhhHH-HhhhhhhCCHHHHHHHHHcc--CCCcCCHHHHHHHHHHHhCHHHHHHHHHH
Confidence 3221111222223344555999 66 78 99999999999888776533 3455677788777777754221 345666
Q ss_pred HHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccC------CCCEEEEecc
Q psy6547 166 AYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPI------SNNIIRLSPA 239 (266)
Q Consensus 166 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~------~~~~iR~~~~ 239 (266)
++++++.+.+.|++ +. .+.. .+..|. ++|+.+++ ..+++++|.++||.++++ ..+++|++++
T Consensus 273 ~~~~~~~l~~~L~~-~~--~~~~-~~~~~~---~~~~~~~~-----~~~~~~~l~~~gI~v~~~~~f~~~~~~~iRis~~ 340 (356)
T PRK04870 273 LRAERTRLAAALAA-LP--GVTV-FPSAAN---FILVRVPD-----AAAVFDGLKTRGVLVKNLSGMHPLLANCLRVTVG 340 (356)
T ss_pred HHHHHHHHHHHHHh-CC--CcEE-CCCCCe---EEEEECCC-----HHHHHHHHHHCCEEEEECCCCCCCCCCeEEEeCC
Confidence 77788888888877 42 2222 234566 88988753 567899999999999864 2469999933
Q ss_pred CCCCHHHHHHHHHHHHHH
Q psy6547 240 LNITEQELREGLDIIINT 257 (266)
Q Consensus 240 ~~~t~~~i~~~~~~l~~~ 257 (266)
+.+++++++++|+++
T Consensus 341 ---~~~~~~~l~~al~~~ 355 (356)
T PRK04870 341 ---TPEENAQFLAALKAA 355 (356)
T ss_pred ---CHHHHHHHHHHHHHh
Confidence 788999999998875
No 196
>PLN03026 histidinol-phosphate aminotransferase; Provisional
Probab=99.86 E-value=1.2e-20 Score=164.73 Aligned_cols=221 Identities=13% Similarity=0.068 Sum_probs=155.5
Q ss_pred CCCCCceeecCC-----CHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCc
Q psy6547 15 PHMPGYNIIPYN-----DVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRT 89 (266)
Q Consensus 15 ~~~~~v~~~~~~-----d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~ 89 (266)
..+.+++.++.+ |+++|++.++ .++++++++++++|++|.+ ++.+.+++|.+. . +++|+||+|.+|...
T Consensus 146 ~~g~~~~~v~~~~~~~~d~~~l~~~~~-~~~~~~v~l~~P~NPTG~~-~~~~~l~~l~~~---~-~~vi~DeaY~~~~~~ 219 (380)
T PLN03026 146 VNGAEVIKVPRTPDFSLDVPRIVEAVE-THKPKLLFLTSPNNPDGSI-ISDDDLLKILEL---P-ILVVLDEAYIEFSTQ 219 (380)
T ss_pred HcCCEEEEeecCCCCCcCHHHHHHHHh-ccCCcEEEEeCCCCCCCCC-CCHHHHHHHHhc---C-CEEEEECcchhhcCC
Confidence 456677777642 6888988883 2367899988889999988 566666666543 3 899999999877433
Q ss_pred Ccccc-cccCCCCcCeeeeccccc-CCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHh-hccHHHHH
Q psy6547 90 GKLLA-IHYEDVRPDIVILGKALS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVIL-EENMIENA 166 (266)
Q Consensus 90 g~~~~-~~~~~~~~d~~~~sK~~~-~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~-~~~~~~~~ 166 (266)
+.... ....+....+-+|||.++ +| +|+||+++++++++.+.... ..++.+.+++.++.++|+..+ -++..+++
T Consensus 220 ~~~~~~~~~~~~viv~~SfSK~~glaG-lRiGy~~~~~~~i~~l~~~~--~~~~~~~~~q~aa~~aL~~~~~~~~~~~~~ 296 (380)
T PLN03026 220 ESRMKWVKKYDNLIVLRTFSKRAGLAG-LRVGYGAFPLSIIEYLWRAK--QPYNVSVAAEVAACAALSNPKYLEDVKNAL 296 (380)
T ss_pred cchHHHHHhCCCEEEEecchHhhcCcc-ccceeeecCHHHHHHHHHhc--CCCCCCHHHHHHHHHHhhCHHHHHHHHHHH
Confidence 32111 112222333455999999 99 99999999999888776432 346678888888888885321 13456677
Q ss_pred HHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccC----CCCEEEEeccCCC
Q psy6547 167 YKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPI----SNNIIRLSPALNI 242 (266)
Q Consensus 167 ~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~----~~~~iR~~~~~~~ 242 (266)
+++++.+.+.|++ ++. +.. .+..|+ |+++.++. +.++.+++++|.++||.++++ ..+++|+++.
T Consensus 297 ~~~r~~l~~~L~~-~~~--~~~-~p~~~~---f~~~~~~~--~~~~~~~~~~l~~~gI~v~~~~~~~~~~~lRis~~--- 364 (380)
T PLN03026 297 VEERERLFGLLKE-VPF--LEP-YPSDAN---FILCRVTS--GRDAKKLKEDLAKMGVMVRHYNSKELKGYIRVSVG--- 364 (380)
T ss_pred HHHHHHHHHHHHH-CCC--CeE-CCCCCe---EEEEECCC--CCCHHHHHHHHHHCCeEEEECCCCCCCCEEEEecC---
Confidence 7788888888887 432 111 234566 89998875 456788999999999999875 2479999933
Q ss_pred CHHHHHHHHHHHHH
Q psy6547 243 TEQELREGLDIIIN 256 (266)
Q Consensus 243 t~~~i~~~~~~l~~ 256 (266)
+.++++++++.|++
T Consensus 365 ~~~~~~~l~~al~~ 378 (380)
T PLN03026 365 KPEHTDALMEALKQ 378 (380)
T ss_pred CHHHHHHHHHHHHH
Confidence 77888888888865
No 197
>KOG0259|consensus
Probab=99.86 E-value=6.1e-20 Score=151.90 Aligned_cols=225 Identities=20% Similarity=0.227 Sum_probs=156.7
Q ss_pred CHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCccc-ccccCC-CCcCe
Q psy6547 27 DVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLL-AIHYED-VRPDI 104 (266)
Q Consensus 27 d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~-~~~~~~-~~~d~ 104 (266)
|++.+|+++ ++++.+++++.++|+.|.+ ++.+.|++|+++|+++|+++|.||+|..+-+.+.+| ++..+. +.|.+
T Consensus 188 DL~~veal~--DENT~AivviNP~NPcGnV-ys~~HL~kiae~A~klgi~vIaDEVY~~~vfg~~pfvpmg~fssiVPVi 264 (447)
T KOG0259|consen 188 DLDGVEALA--DENTVAIVVINPNNPCGNV-YSEDHLKKIAETAKKLGIMVIADEVYGHTVFGDKPFVPMGKFSSIVPVI 264 (447)
T ss_pred chHHHHHhh--ccCeeEEEEeCCCCCCccc-ccHHHHHHHHHHHHHhCCeEEehhhcceeecCCCCccchhhccccCceE
Confidence 799999999 6678888877777778877 999999999999999999999999997764444443 344443 34544
Q ss_pred ee--ecc-cccCCchhhhhheecHHhhhccCCC--------CCCCCCCCcHHHHHHHHHHHHHHhhc---cHHHHHHHHH
Q psy6547 105 VI--LGK-ALSGGLYPISAVLADDEVMGTLVPG--------THGSTYGGNPLACKLAMTALDVILEE---NMIENAYKMG 170 (266)
Q Consensus 105 ~~--~sK-~~~~g~~~~g~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~a~~~~l~~~~~~---~~~~~~~~~~ 170 (266)
.. +|| |+-+| ||+||++..... ..++.. ....+..++.+.|+|.-..|+...++ .-+.-++.+.
T Consensus 265 tlggisKrW~VPG-WRlGWi~~hD~~-gvf~~~~~~q~~~~~~~~~~~p~TiiQ~AlP~IL~kTp~efF~k~~~~lk~na 342 (447)
T KOG0259|consen 265 TLGGISKRWIVPG-WRLGWIALHDPR-GVFRDTKVVQGIKNFLDIIPGPATIIQGALPDILEKTPEEFFDKKLSFLKSNA 342 (447)
T ss_pred eecccccccccCC-ceeeeEEEeccc-ccccchHHHHHHHHHHhccCCccHhHHHHhHHHHHhChHHHHHHHHHHHHhhH
Confidence 44 888 56699 999999875432 112211 12234456667777776655532221 2345567788
Q ss_pred HHHHHHhhcccccCCCcccEEecCccceeeEEEEeeC---ccchHHHHHHHHH-HCCceeccC----CCCEEEEeccCCC
Q psy6547 171 EIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVS---AILEVYDVCIKMK-DAGLVTKPI----SNNIIRLSPALNI 242 (266)
Q Consensus 171 ~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~---~~~~~~~~~~~l~-~~gi~~~~~----~~~~iR~~~~~~~ 242 (266)
+...++|++ +..-..+ .+..|. -+.++.+.-. +-.+..+||++|. |+.+++.|+ -++|+|++ +.+
T Consensus 343 ~l~y~~Lk~-IP~l~cp--~kPeg~--mylmv~l~~s~~~~~~dD~dFc~kL~~Eesv~~LPG~af~~~nw~Ri~--i~~ 415 (447)
T KOG0259|consen 343 DLCYSRLKD-IPCLTCP--VKPEGC--MYLMVKLNLSLFPDIEDDVDFCQKLAREESVICLPGQAFGLKNWLRIV--ITV 415 (447)
T ss_pred HHHHHHHhc-CCCcccC--cCCCcc--eEEEeccchhhhccccccHHHHHHHhhhcceEEeccccccCCCeEEEE--Ecc
Confidence 888889888 5542222 233344 0444443321 1235678999985 789999986 57999999 778
Q ss_pred CHHHHHHHHHHHHHHHHHHhh
Q psy6547 243 TEQELREGLDIIINTINTMAA 263 (266)
Q Consensus 243 t~~~i~~~~~~l~~~~~~~~~ 263 (266)
..+.++++++||++++.++.+
T Consensus 416 ~~~~leea~~Rik~Fc~RH~~ 436 (447)
T KOG0259|consen 416 EEEMLEEAFSRIKEFCDRHSK 436 (447)
T ss_pred ChHHHHHHHHHHHHHHHhhhh
Confidence 999999999999999999873
No 198
>PRK01688 histidinol-phosphate aminotransferase; Provisional
Probab=99.85 E-value=1.2e-20 Score=162.98 Aligned_cols=219 Identities=16% Similarity=0.146 Sum_probs=153.5
Q ss_pred CCCCCCceeecCC-----CHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCC
Q psy6547 14 GPHMPGYNIIPYN-----DVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGR 88 (266)
Q Consensus 14 ~~~~~~v~~~~~~-----d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~ 88 (266)
.-.+.+++.++.+ |++++++.+ . +++++++..++|++|.+ ++.+.+++|++.|++ +++||+||+|.+|..
T Consensus 117 ~~~G~~~~~v~~~~~~~~d~~~l~~~~--~-~~~lv~l~nPnNPTG~~-~~~~~l~~l~~~~~~-~~~vivDEay~~f~~ 191 (351)
T PRK01688 117 ETIGVEIRTVPTLDNWQLDLPAIADNL--D-GVKVVYVCSPNNPTGNL-INPQDLRTLLELTRG-KAIVVADEAYIEFCP 191 (351)
T ss_pred HHcCCEEEEeecCCCCCCCHHHHHHhc--c-CCcEEEEeCCCCCCCCC-CCHHHHHHHHHhCCC-CcEEEEECchhhcCC
Confidence 3456677777643 678888877 2 57888887888889987 899999999999876 688999999987742
Q ss_pred cCcccc-cccCCCCcCeeeeccccc-CCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHh---hccHH
Q psy6547 89 TGKLLA-IHYEDVRPDIVILGKALS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVIL---EENMI 163 (266)
Q Consensus 89 ~g~~~~-~~~~~~~~d~~~~sK~~~-~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~---~~~~~ 163 (266)
...... ...++....+-+|||+++ +| +|+||+++++++++.+... ...+..+.+++.++..+|+... -++..
T Consensus 192 ~~s~~~~~~~~~n~iv~rSfSK~~glaG-lRiGy~i~~~~~i~~l~~~--~~~~~v~~~~~~~a~~~L~~~~~~~~~~~~ 268 (351)
T PRK01688 192 QASLAGWLAEYPHLVILRTLSKAFALAG-LRCGFTLANEEVINLLLKV--IAPYPLSTPVADIAAQALSPQGIAAMRERV 268 (351)
T ss_pred CCChHHHHhhCCCEEEEecchHhhcCHH-HHHhHHhCCHHHHHHHHhc--cCCCCCCHHHHHHHHHHHhcchHHHHHHHH
Confidence 211111 122222233444999999 89 9999999999998887743 3446667777777777775311 12344
Q ss_pred HHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccC-----CCCEEEEec
Q psy6547 164 ENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPI-----SNNIIRLSP 238 (266)
Q Consensus 164 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~-----~~~~iR~~~ 238 (266)
+.+.+.++++.+.|++ ++. +..-.++.++ |+++.+++ +.++.++|+++||.+++. ..+++|+++
T Consensus 269 ~~~~~~r~~l~~~L~~-~~~--~~~~~ps~~n---fi~~~~~~-----~~~l~~~L~~~gi~vr~~~~~~~~~~~iRis~ 337 (351)
T PRK01688 269 AEINANRQWLIAALKE-IPC--VEQVFDSETN---YILARFTA-----SSAVFKSLWDQGIILRDQNKQPGLSNCLRITI 337 (351)
T ss_pred HHHHHHHHHHHHHHHh-CCC--CCeECCCCCc---EEEEEcCC-----HHHHHHHHHHCCeEEEECCCcCCCCCeEEEeC
Confidence 5566677778787776 432 2110234566 88887743 678999999999999854 247999994
Q ss_pred cCCCCHHHHHHHHHHH
Q psy6547 239 ALNITEQELREGLDII 254 (266)
Q Consensus 239 ~~~~t~~~i~~~~~~l 254 (266)
+ ++++++++++.|
T Consensus 338 ~---~~~e~~~l~~al 350 (351)
T PRK01688 338 G---TREECQRVIDAL 350 (351)
T ss_pred C---CHHHHHHHHHhh
Confidence 4 789999999887
No 199
>PRK13479 2-aminoethylphosphonate--pyruvate transaminase; Provisional
Probab=99.85 E-value=2.7e-19 Score=155.61 Aligned_cols=236 Identities=13% Similarity=0.097 Sum_probs=166.2
Q ss_pred CCCCCCceeecC-----CCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCC
Q psy6547 14 GPHMPGYNIIPY-----NDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGR 88 (266)
Q Consensus 14 ~~~~~~v~~~~~-----~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~ 88 (266)
...+.+++.++. .|++++++.++++++++++++..+++++|... ++++|.++|+++|+++|+|+++ +++.
T Consensus 100 ~~~g~~~~~i~~~~~~~~d~~~l~~~l~~~~~~~~v~~~~~~~~tG~~~----~~~~i~~l~~~~~~~livDa~~-~~g~ 174 (368)
T PRK13479 100 EYLGIAHVVLDTGEDEPPDAAEVEAALAADPRITHVALVHCETTTGILN----PLDEIAAVAKRHGKRLIVDAMS-SFGA 174 (368)
T ss_pred HHcCCcEEEEECCCCCCCCHHHHHHHHHhCCCCcEEEEEcccCcccccc----CHHHHHHHHHHcCCEEEEEccc-ccCC
Confidence 334667777764 36899999986555677888888888899886 7899999999999999999776 4532
Q ss_pred cCcccccccCCCCcCeeeecccccCCchhhhhheecHHhhhccCCCC-----------------CCCCCCCcHHHHHHHH
Q psy6547 89 TGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGT-----------------HGSTYGGNPLACKLAM 151 (266)
Q Consensus 89 ~g~~~~~~~~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~a~~ 151 (266)
.......++.+.-+.+++|++.|+ .++|++++++++.+.+.... ....++++..++.++.
T Consensus 175 --~~~~~~~~~~d~~v~s~~K~l~g~-~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~l~ 251 (368)
T PRK13479 175 --IPIDIAELGIDALISSANKCIEGV-PGFGFVIARRSELEACKGNSRSLSLDLYDQWAYMEKTGQWRFTPPTHVVAAFY 251 (368)
T ss_pred --ccccccccCceEEEecCccccccC-CCceEEEECHHHHHHhhcCCCCeeecHHHHHhhhcccCCCCCCCcHHHHHHHH
Confidence 223344444444445588998755 45799999998877665421 1222466767777777
Q ss_pred HHHHHHhh----ccHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceec
Q psy6547 152 TALDVILE----ENMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTK 227 (266)
Q Consensus 152 ~~l~~~~~----~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~ 227 (266)
++++.+.. ++..+++.++++++++.|++ ++...+.......+. ++.|.++...+.+..++.++|.++||.++
T Consensus 252 ~al~~l~~~~~~~~~~~~~~~~~~~l~~~L~~-~g~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~L~~~gi~v~ 327 (368)
T PRK13479 252 QALLELEEEGGVPARGARYANNQRTLVAGMRA-LGFEPLLDAEIQSPI---IVTFHAPADPAYDFKEFYERLKEQGFVIY 327 (368)
T ss_pred HHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHH-cCCcccCCchhcCce---EEEEECCCCCCcCHHHHHHHHHHCCEEEe
Confidence 78876643 34567788888888888887 554322110111122 35555544212467889999999999998
Q ss_pred cCC---CCEEEEeccCCCCHHHHHHHHHHHHHHHHHH
Q psy6547 228 PIS---NNIIRLSPALNITEQELREGLDIIINTINTM 261 (266)
Q Consensus 228 ~~~---~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~ 261 (266)
++. .+++|++....+++++++++++.|+++++++
T Consensus 328 ~g~~~~~~~iRis~~~~~t~edi~~~l~~L~~~l~~~ 364 (368)
T PRK13479 328 PGKLTQVDTFRIGCIGDVDAADIRRLVAAIAEALYWM 364 (368)
T ss_pred cCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHHHc
Confidence 753 3589999877789999999999999998765
No 200
>PRK09275 aspartate aminotransferase; Provisional
Probab=99.85 E-value=1.9e-20 Score=167.20 Aligned_cols=224 Identities=15% Similarity=0.132 Sum_probs=146.2
Q ss_pred CHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHh--cCCEEEEeccccCcCCcCcccccccCCCCcCe
Q psy6547 27 DVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQ--YNVLFIADEVQTGLGRTGKLLAIHYEDVRPDI 104 (266)
Q Consensus 27 d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~--~g~~li~De~~~~~~~~g~~~~~~~~~~~~d~ 104 (266)
|+++|++++ ++++++|+++.++||+|.+ ++++.+++|+++|++ ++++||+||+|..|.................+
T Consensus 230 d~~~l~~~~--~~~tkai~l~nP~NPTG~v-~s~e~l~~I~~ia~~~~~~l~II~DEvY~~f~~~~~s~~~~~~~~~I~v 306 (527)
T PRK09275 230 PDSELEKLR--DPSIKALFLVNPSNPPSVA-MSDESLEKIADIVNEKRPDLMIITDDVYGTFVDDFRSLFAVLPYNTILV 306 (527)
T ss_pred CHHHHHhhc--CCCCCEEEEeCCcCCcCCC-CCHHHHHHHHHHHHhcCCCcEEEECCCChhhcccccCHHHhCCCCEEEE
Confidence 678898877 5678999988888889977 899999999999964 59999999999877421111111111233445
Q ss_pred eeeccccc-CCchhhhhheecHH-----hhhcc--------------------------------CCCCCCCCCCCcHHH
Q psy6547 105 VILGKALS-GGLYPISAVLADDE-----VMGTL--------------------------------VPGTHGSTYGGNPLA 146 (266)
Q Consensus 105 ~~~sK~~~-~g~~~~g~~~~~~~-----~~~~~--------------------------------~~~~~~~~~~~~~~~ 146 (266)
.+|||.++ +| ||+||++++++ +++.+ +.....++.+.+.+.
T Consensus 307 ~SfSK~f~mtG-~RlG~i~~~~~~v~~~~i~~l~~~~~~~~~~ry~~~~~~p~~~~fidrlvad~~~v~~~~t~~~s~p~ 385 (527)
T PRK09275 307 YSFSKYFGATG-WRLGVIALHEDNVFDKLIAKLPEEKKKELDKRYSSLTTDPEKLKFIDRLVADSRQVALNHTAGLSTPQ 385 (527)
T ss_pred eehhhhccCcH-hHHhhhhcCchhHHHHHHHhccHHHHHHHHhhhhhccCCcchhhhHHHHHHHHHHHHHhhccCCCCHH
Confidence 56999998 89 99999999876 33333 112234555666666
Q ss_pred HHH-H----HHHHHHHhh--ccHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCc-----------
Q psy6547 147 CKL-A----MTALDVILE--ENMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSA----------- 208 (266)
Q Consensus 147 ~~a-~----~~~l~~~~~--~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~----------- 208 (266)
|.+ + .++++.... +...+.++++++.+.+.|. . .+....+..+. ++++++..-.
T Consensus 386 Q~a~al~~~~all~~~~~~~~~~~~~~~~Rr~~l~~~Lg----~-~~~~~~p~g~f---Y~~~di~~~~~~~~g~~f~~~ 457 (527)
T PRK09275 386 QVQMALFSLFALLDEEDAYKKAMKDIIRRRYKALYEGLG----L-PEPEDPNNAAY---YTLIDLEEWAEKNYGKEFADY 457 (527)
T ss_pred HHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHcC----C-CCcCCCCCeeE---EEEEEhHHhhhhccCchhhhh
Confidence 664 3 222321111 2345555566665655552 1 12111234455 6666664310
Q ss_pred ---cchHHHHHHHHH-HCCceeccC-----CCCEEEEeccCCCCHHHHHHHHHHHHHHHHHHhh
Q psy6547 209 ---ILEVYDVCIKMK-DAGLVTKPI-----SNNIIRLSPALNITEQELREGLDIIINTINTMAA 263 (266)
Q Consensus 209 ---~~~~~~~~~~l~-~~gi~~~~~-----~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~~~ 263 (266)
..+..+|+.+|. +.||.+.|+ ..+++|+|.. +.+++++.++.++|.+++++...
T Consensus 458 l~~~~~~~~f~~~Ll~e~gV~v~PG~~Fg~~~~~vRis~a-~~~~~~~~~~~~rl~~~l~~y~~ 520 (527)
T PRK09275 458 LKKNYSPVDLLFRLAEETGVVLLPGGGFGGPEWSVRVSLA-NLNEEDYAKIGKAIRKLLDEYYE 520 (527)
T ss_pred hhccCCHHHHHHHHHhcCCEEEeCchhhCCCCCeEEEEEe-cCCHHHHHHHHHHHHHHHHHHHH
Confidence 125678888887 559999986 2468999942 25889999999999999988643
No 201
>PLN02231 alanine transaminase
Probab=99.85 E-value=3.6e-20 Score=167.12 Aligned_cols=248 Identities=13% Similarity=0.114 Sum_probs=164.3
Q ss_pred CCcCcccccCCCCCCceeecCC-------CHHHHHHHHhcC----CCEEEEEEccccCCCCcccCChHHHHHHHHHHHhc
Q psy6547 5 TDPTSYNEFGPHMPGYNIIPYN-------DVDALEAKLKSN----PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQY 73 (266)
Q Consensus 5 ~~~~~~~~~~~~~~~v~~~~~~-------d~~~l~~~l~~~----~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~ 73 (266)
.+|.+...+..++.+++.++.+ |+++|++.++.. .+++++++..++|++|.+ ++.+.+++|.++|++|
T Consensus 225 ~Y~~y~~~~~~~g~~~v~~~l~~~~~~~~d~~~Le~~l~~~~~~~~~~k~ivl~nP~NPTG~v-ls~e~l~~Iv~~a~~~ 303 (534)
T PLN02231 225 QYPLYSASIALHGGTLVPYYLDEATGWGLEISELKKQLEDARSKGITVRALVVINPGNPTGQV-LAEENQRDIVEFCKQE 303 (534)
T ss_pred CChhHHHHHHHcCCEEEEEecCcccCCCCCHHHHHHHHHHHhhcCCCeEEEEEeCCCCCCCcC-CCHHHHHHHHHHHHHc
Confidence 4445555566677778777632 689999998542 157887776678889987 9999999999999999
Q ss_pred CCEEEEeccccCcCCc-Cccc-cccc----CCC---C---cCeeeecccc-c-CCchhhhhhee---cHHhhhccCCCCC
Q psy6547 74 NVLFIADEVQTGLGRT-GKLL-AIHY----EDV---R---PDIVILGKAL-S-GGLYPISAVLA---DDEVMGTLVPGTH 136 (266)
Q Consensus 74 g~~li~De~~~~~~~~-g~~~-~~~~----~~~---~---~d~~~~sK~~-~-~g~~~~g~~~~---~~~~~~~~~~~~~ 136 (266)
|++||+||+|..+... +..+ ++.. .+. + ..+.++||.+ + +| +|+||+++ ++++.+.+.....
T Consensus 304 ~l~lI~DEvY~~l~y~~~~~~~s~~~~~~~~g~~~~~~~vi~l~S~SK~~~g~pG-lRiGy~~~~~~~~~l~~~l~k~~~ 382 (534)
T PLN02231 304 GLVLLADEVYQENVYVPDKKFHSFKKVARSMGYGEKDISLVSFQSVSKGYYGECG-KRGGYMEVTGFTSDVREQIYKVAS 382 (534)
T ss_pred CCEEEEEccchhcccCCCCCcccHHHHHhhhccccCCceEEEEeccCcccccCCc-cceEEEEEecCCHHHHHHHHHHHh
Confidence 9999999999876432 2222 2111 111 1 2233599987 5 79 99999976 5777776654322
Q ss_pred CCCCCCcHHHHHHHHHHHHH-------Hh-----hccHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEE
Q psy6547 137 GSTYGGNPLACKLAMTALDV-------IL-----EENMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLIL 204 (266)
Q Consensus 137 ~~~~~~~~~~~~a~~~~l~~-------~~-----~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~ 204 (266)
.+.+.+.+.+.++..+++. +. .+++++.++++++.+.+.|++ +. .+....+..|+ ++|..+
T Consensus 383 -~~~~s~~~~Q~~~~~~l~~p~~~~~~y~~~~~~~~~i~~~~~~r~~~l~~~L~~-~~--gi~~~~p~Ggf---ylw~~l 455 (534)
T PLN02231 383 -VNLCSNISGQILASLVMSPPKPGDESYESYMAEKDGILSSLARRAKTLEDALNS-LE--GVTCNKAEGAM---YLFPRI 455 (534)
T ss_pred -hhcCCChHHHHHHHHHhCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CC--CceecCCCeee---EEeccc
Confidence 3345566677766666631 11 123567788888888888887 42 23331233455 666343
Q ss_pred --eeCc--------cchHHHHHHHHH-HCCceeccCC-------CCEEEEeccCCCCHHHHHHHHHHHHHHHHHHhh
Q psy6547 205 --SVSA--------ILEVYDVCIKMK-DAGLVTKPIS-------NNIIRLSPALNITEQELREGLDIIINTINTMAA 263 (266)
Q Consensus 205 --~~~~--------~~~~~~~~~~l~-~~gi~~~~~~-------~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~~~ 263 (266)
+... ......++.+|+ +.||.+.|+. ..++|++ +..+++++++++++|.+++++...
T Consensus 456 ~lp~~~~~~~~~~~~~~d~~~~~~Ll~~~GV~vvPGs~Fg~~~g~~~~Rit--~~~~~e~l~eal~RL~~~~~~~~~ 530 (534)
T PLN02231 456 HLPQKAIKAAEAAKTAPDAFYCKRLLNATGIVVVPGSGFGQVPGTWHFRCT--ILPQEDKIPAIVSRLTEFHKSFMD 530 (534)
T ss_pred cCcHHHHHHHhhcCCCcHHHHHHHHHHhcCEEEeCCcccCCCCCCCeEEEE--eCCCHHHHHHHHHHHHHHHHHHHH
Confidence 3200 011334667666 6799999862 2469999 567899999999999999887654
No 202
>PRK10874 cysteine sulfinate desulfinase; Provisional
Probab=99.85 E-value=2.4e-19 Score=157.74 Aligned_cols=225 Identities=12% Similarity=0.078 Sum_probs=160.0
Q ss_pred CCCCCceeecC-----CCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCc
Q psy6547 15 PHMPGYNIIPY-----NDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRT 89 (266)
Q Consensus 15 ~~~~~v~~~~~-----~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~ 89 (266)
-.+.+++.++. .|++++++.+ .++++++++..++|++|.+. ++++|.++|+++|+++++|++|+ ++..
T Consensus 132 ~~g~~v~~v~~~~~~~~d~~~l~~~i--~~~t~lv~i~~~~n~tG~~~----~~~~i~~l~~~~g~~~ivD~a~~-~g~~ 204 (401)
T PRK10874 132 QTGAKVVKLPLGADRLPDVDLLPELI--TPRTRILALGQMSNVTGGCP----DLARAITLAHQAGMVVMVDGAQG-AVHF 204 (401)
T ss_pred HhCCEEEEEecCCCCcCCHHHHHHhc--CcCcEEEEEeCCcccccCcC----CHHHHHHHHHHcCCEEEEECCcc-cccc
Confidence 34667777764 3689999999 55789999999999999987 89999999999999999999994 2211
Q ss_pred CcccccccCCCCcCeee--ecccccCCchhhhhheecHHhhhccCCCCC---------------------CCCCCCcHHH
Q psy6547 90 GKLLAIHYEDVRPDIVI--LGKALSGGLYPISAVLADDEVMGTLVPGTH---------------------GSTYGGNPLA 146 (266)
Q Consensus 90 g~~~~~~~~~~~~d~~~--~sK~~~~g~~~~g~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~ 146 (266)
....... .+|+.+ ++|.+++ ..+|++..++++.+.+.+... ...-+.+..+
T Consensus 205 --~~~~~~~--~~d~~~~s~~K~~gp--~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Gt~~~~~ 278 (401)
T PRK10874 205 --PADVQAL--DIDFYAFSGHKLYGP--TGIGVLYGKSELLEAMSPWQGGGKMLTEVSFDGFTPQSAPWRFEAGTPNVAG 278 (401)
T ss_pred --cCCchhc--CCCEEEEecccccCC--CccEEEEEchHHHhcCCCeecCCcceEeeccCccCCCCChhhccCCCcCHHH
Confidence 1222233 456555 5597762 236899999888776653211 0111445566
Q ss_pred HHHHHHHHHHHhhc---cHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCC
Q psy6547 147 CKLAMTALDVILEE---NMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAG 223 (266)
Q Consensus 147 ~~a~~~~l~~~~~~---~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~g 223 (266)
..+..++++.+... ...++.+++++++++.|++ +.. +.......+. +++|.++. .+.+++.+.|.++|
T Consensus 279 ~~al~~al~~l~~~g~~~~~~~~~~l~~~l~~~l~~-~~g--~~~~~~~~~~---i~~~~~~~---~~~~~~~~~L~~~g 349 (401)
T PRK10874 279 VIGLSAALEWLADIDINQAESWSRSLATLAEDALAK-LPG--FRSFRCQDSS---LLAFDFAG---VHHSDLVTLLAEYG 349 (401)
T ss_pred HHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhc-CCC--EEEeCCCCCc---EEEEEECC---cCHHHHHHHHHHCC
Confidence 77777777776543 3567777888888888877 421 1110012233 77777643 45688999999999
Q ss_pred ceeccCC------------CCEEEEeccCCCCHHHHHHHHHHHHHHHHHH
Q psy6547 224 LVTKPIS------------NNIIRLSPALNITEQELREGLDIIINTINTM 261 (266)
Q Consensus 224 i~~~~~~------------~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~ 261 (266)
|.++++. .+++|+|++..+|++|++++++.|+++++.+
T Consensus 350 I~v~~g~~~~~~~~~~~g~~~~iRiS~~~~nt~edid~ll~al~~~~~~~ 399 (401)
T PRK10874 350 IALRAGQHCAQPLLAALGVTGTLRASFAPYNTQSDVDALVNAVDRALELL 399 (401)
T ss_pred cEEeccccchHHHHHHhCCCCEEEEEecccCCHHHHHHHHHHHHHHHHHh
Confidence 9998742 4789999999999999999999999987753
No 203
>PRK05166 histidinol-phosphate aminotransferase; Provisional
Probab=99.85 E-value=2.9e-20 Score=161.90 Aligned_cols=224 Identities=17% Similarity=0.115 Sum_probs=155.8
Q ss_pred cCCCCCCceeecCC-----CHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcC
Q psy6547 13 FGPHMPGYNIIPYN-----DVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLG 87 (266)
Q Consensus 13 ~~~~~~~v~~~~~~-----d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~ 87 (266)
+...+.+++.++.+ |++++++.++ +++++++++.++|++|.+ ++.+.+++|++.|++ ++++|+||+|..|.
T Consensus 129 ~~~~g~~~~~v~~~~~~~~~~~~l~~~~~--~~~~~v~l~~p~NPtG~~-~~~~~~~~l~~~~~~-~~~ii~De~y~~~~ 204 (371)
T PRK05166 129 PTMMGARVERVTVTPDLGFDLDALCAAVA--RAPRMLMFSNPSNPVGSW-LTADQLARVLDATPP-ETLIVVDEAYAEYA 204 (371)
T ss_pred HHHcCCeEEEeecCCCCCCCHHHHHHhhh--cCCCEEEEeCCCCCCCCC-CCHHHHHHHHHhCCC-CcEEEEECcHHHhc
Confidence 34566777777653 6899998884 356788887788889987 899999999998865 88999999998774
Q ss_pred CcCcccc-cc---c-CCCCcCeeeeccccc-CCchhhhhhee-cHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHh-h
Q psy6547 88 RTGKLLA-IH---Y-EDVRPDIVILGKALS-GGLYPISAVLA-DDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVIL-E 159 (266)
Q Consensus 88 ~~g~~~~-~~---~-~~~~~d~~~~sK~~~-~g~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~-~ 159 (266)
..+.... .. . ......+.+|||.++ +| +|+||+++ ++++.+.+... ...++.+.+++.++.+++..-+ -
T Consensus 205 ~~~~~~~~~~~~~~~~~~vi~i~SfSK~~~l~G-lRiG~~i~~~~~l~~~~~~~--~~~~~~~~~~q~~~~~~l~~~~~~ 281 (371)
T PRK05166 205 AGDDYPSALTLLKARGLPWIVLRTFSKAYGLAG-LRVGYGLVSDPELVGLLDRV--RTPFNVNGAAQAAALAALDDEEHL 281 (371)
T ss_pred CCcCcccHHHHHhhcCCCEEEEeechHhhhcch-hheeeeecCCHHHHHHHHHh--ccCCCCCHHHHHHHHHHhcCHHHH
Confidence 2221111 11 1 112234455999999 99 99999765 67777766532 2345678888877777764211 1
Q ss_pred ccHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccC----CCCEEE
Q psy6547 160 ENMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPI----SNNIIR 235 (266)
Q Consensus 160 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~----~~~~iR 235 (266)
++..+.++++++.+.+.|++ .+ +.. .++.|+ |+|+.++. +..+++++|.++||.+.|+ ..+++|
T Consensus 282 ~~~~~~~~~~r~~l~~~L~~-~g---~~~-~p~~g~---fl~~~~~~----~~~~l~~~l~~~gi~v~p~~~~~~~~~iR 349 (371)
T PRK05166 282 AKGVALALAERERLKKELAE-MG---YRI-APSRAN---FLFFDARR----PASAVAEALLRQGVIVKPWKQPGFETFIR 349 (371)
T ss_pred HHHHHHHHHHHHHHHHHHHH-Cc---Cee-CCCcCC---EEEEeCCC----CHHHHHHHHHHCCeEEecCCCCCCCCeEE
Confidence 23455666777777888877 43 222 334577 89988654 5688999999999999875 257899
Q ss_pred EeccCCCCHHHHHHHHHHHHHHH
Q psy6547 236 LSPALNITEQELREGLDIIINTI 258 (266)
Q Consensus 236 ~~~~~~~t~~~i~~~~~~l~~~~ 258 (266)
++.. +.++.+++.+.|++++
T Consensus 350 i~~~---~~~~~~~l~~~l~~i~ 369 (371)
T PRK05166 350 VSIG---SPEENDHFVAALDKVL 369 (371)
T ss_pred EEcC---CHHHHHHHHHHHHHHh
Confidence 9933 6677788887777654
No 204
>PRK08637 hypothetical protein; Provisional
Probab=99.85 E-value=4.9e-20 Score=161.37 Aligned_cols=243 Identities=14% Similarity=0.136 Sum_probs=159.7
Q ss_pred CcCcccccC-CCCCCceeecC--C----CHHHHHHHHh--cCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHh----
Q psy6547 6 DPTSYNEFG-PHMPGYNIIPY--N----DVDALEAKLK--SNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQ---- 72 (266)
Q Consensus 6 ~~~~~~~~~-~~~~~v~~~~~--~----d~~~l~~~l~--~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~---- 72 (266)
++.+...+. ..+.+++.++. + |++++++.++ ..+..++++++.++||+|.+ ++.+.+++|+++|++
T Consensus 103 y~~~~~~~~~~~g~~vv~v~~~~~~~~~d~~~l~~~~~~~~~~~~~~~~~~~P~NPTG~~-~s~~~~~~l~~~~~~~~~~ 181 (388)
T PRK08637 103 WGNYKLTFNTRRGAEIVTYPIFDEDGGFDTDALKEALQAAYNKGKVIVILNFPNNPTGYT-PTEKEATAIVEAIKELADA 181 (388)
T ss_pred CccHHHHHHHhcCCEEEEecccCCCCcCCHHHHHHHHHhhccCCCEEEEEeCCCCCCCCC-CCHHHHHHHHHHHHHHHhc
Confidence 334444343 46778888875 2 5899998885 22344555566578888876 999999999999885
Q ss_pred -cCCEEEEeccccCcCCcCccc-c-ccc-CCCCcC---ee--eeccccc-CCchhhhhheec------HHhhhccCCC--
Q psy6547 73 -YNVLFIADEVQTGLGRTGKLL-A-IHY-EDVRPD---IV--ILGKALS-GGLYPISAVLAD------DEVMGTLVPG-- 134 (266)
Q Consensus 73 -~g~~li~De~~~~~~~~g~~~-~-~~~-~~~~~d---~~--~~sK~~~-~g~~~~g~~~~~------~~~~~~~~~~-- 134 (266)
|+++||+||+|.+|...+... + +.. .+...+ +. ++||.++ +| +|+||++.+ +++.+.+...
T Consensus 182 ~~~~~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~vi~i~~~s~SK~~~~pG-lRlG~~~~~~~~~~~~~l~~~~~~~~~ 260 (388)
T PRK08637 182 GTKVVAVVDDAYFGLFYEDSYKESLFAALANLHSNILAVKLDGATKEEFVWG-FRVGFITFGTKAGSSQTVKEALEKKVK 260 (388)
T ss_pred CCcEEEEecccchhcccCCccchhhHHHhhcccccceEEEeccccccCCCcc-cceEEEEEccccCCcHHHHHHHHHHHH
Confidence 999999999998874333211 1 111 121122 22 6999877 89 999999853 5666555421
Q ss_pred --CCCCCCCCcHHHHHHHHHHHHHHhhccHHHH-------HHHHHHHHHHHhhcccc-cCCCcccEEecCccceeeEEEE
Q psy6547 135 --THGSTYGGNPLACKLAMTALDVILEENMIEN-------AYKMGEIFRSELSSPAN-KSKASFKLSSGGLKKSINTLIL 204 (266)
Q Consensus 135 --~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~-------~~~~~~~l~~~l~~~~~-~~~~~~~~~~~g~~~~~~~~~~ 204 (266)
.....++.|.+.+.++..+++. ..+.++ ++++.+.+.+.|++ .. ...+....+..|. ++|+.+
T Consensus 261 ~~~~~~~~~~s~~~q~a~~~~l~~---~~~~~~~~~~~~~~~~r~~~~~~~l~~-~~~~~~~~~~~~~~g~---~~~~~l 333 (388)
T PRK08637 261 GLIRSNISNGPHPSQSAVLRALNS---PEFDKEKQEKFQILKERYEKTKEVLYD-GKYDDAWQAYPFNSGY---FMCLKL 333 (388)
T ss_pred HHhhcccCCCCcHHHHHHHHHhCC---HHHHHHHHHHHHHHHHHHHHHHHHHHh-hCCCCCcccccccceE---EEEecC
Confidence 1123346678888888877742 223333 44444444555544 21 1123321334677 888888
Q ss_pred eeCccchHHHHHHHHH-HCCceeccCCCCEEEEeccCCCCHHHHHHHHHHHHHHHHHH
Q psy6547 205 SVSAILEVYDVCIKMK-DAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINTM 261 (266)
Q Consensus 205 ~~~~~~~~~~~~~~l~-~~gi~~~~~~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~ 261 (266)
+. .+..+++++|+ ++||.+.+.+.+++|++... .+++++++++++|.+++..+
T Consensus 334 ~~---~~~~~l~~~l~~~~gv~~~~~~~~~iRi~~~~-~~~~~i~~~~~~l~~~~~~~ 387 (388)
T PRK08637 334 KG---VDAEELRVHLLEKYGIGTIALNETDLRIAFSC-VEEEDIPELFDSIYKAIKDL 387 (388)
T ss_pred Ch---HHHHHHHHHHhhhcceEEEeccCCceEEEeec-CCHHHHHHHHHHHHHHHHhc
Confidence 63 35788999996 67998887767899999664 58999999999999988753
No 205
>PRK14809 histidinol-phosphate aminotransferase; Provisional
Probab=99.85 E-value=4e-20 Score=160.19 Aligned_cols=217 Identities=15% Similarity=0.204 Sum_probs=150.0
Q ss_pred CCCCceeecCC-------CHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCC
Q psy6547 16 HMPGYNIIPYN-------DVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGR 88 (266)
Q Consensus 16 ~~~~v~~~~~~-------d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~ 88 (266)
.+.+++.++.+ +++++++.. ++++++++++++|++|.+ ++.+.+++|++.|++ +++||+||+|.+|..
T Consensus 126 ~g~~~~~~~l~~~~~~~~~~~~~~~~~---~~~k~i~l~~p~NPTG~~-~s~~~~~~l~~~~~~-~~~iI~De~y~~~~~ 200 (357)
T PRK14809 126 HHGEVREYPVSKADDFEQTADTVLDAY---DGERIVYLTSPHNPTGSE-IPLDEVEALAERTDE-ETLVVVDEAYGEFAE 200 (357)
T ss_pred cCCeEEEEecccCcCCCcCHHHHHHhh---cCCcEEEEeCCCCCCCcC-CCHHHHHHHHHhCcc-CcEEEEechhhhccC
Confidence 34556555532 344444433 246788888888889987 899999999999875 789999999987753
Q ss_pred cCccc-ccccCCCCcCeeeeccccc-CCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHh-hccHHHH
Q psy6547 89 TGKLL-AIHYEDVRPDIVILGKALS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVIL-EENMIEN 165 (266)
Q Consensus 89 ~g~~~-~~~~~~~~~d~~~~sK~~~-~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~-~~~~~~~ 165 (266)
.+... .....+....+.+|||.++ +| +|+||+++++++++.+... ..++..+.+++.++..+++.-+ -++..+.
T Consensus 201 ~~~~~~~~~~~~~vi~~~SfSK~~~~~G-lRiG~~~~~~~~~~~~~~~--~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~ 277 (357)
T PRK14809 201 RPSAVALVEERDDVAVLRTFSKAYGLAG-LRLGYAVVPEEWADAYARV--NTPFAASELACRAGLAALDDDEHVERTVET 277 (357)
T ss_pred CchhHHHHhhCCCEEEEecchhHhcCcc-hhheeeecCHHHHHHHHHh--CCCCCCCHHHHHHHHHHhCCHHHHHHHHHH
Confidence 33211 1222233445566999998 89 9999999999988887653 3466778888888877774211 0223444
Q ss_pred HHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccCC----CCEEEEeccCC
Q psy6547 166 AYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPIS----NNIIRLSPALN 241 (266)
Q Consensus 166 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~----~~~iR~~~~~~ 241 (266)
++++++.+.+.|.. .. .+..|+ |+|+.++ +..++++.|.++||.+.++. .+++|++.
T Consensus 278 ~~~~r~~l~~~L~~----~~----~~~~g~---f~~~~~~-----~~~~~~~~l~~~gv~v~~g~~f~~~~~iRls~--- 338 (357)
T PRK14809 278 ARWAREYIREELDA----PT----WESAGN---FVLAEVG-----DASAVAEAAQERGVIVRDCTSFGLPECIRITC--- 338 (357)
T ss_pred HHHHHHHHHHHhcC----cc----CCCCCC---EEEEECC-----CHHHHHHHHHHCCEEEEECccCCCCCeEEEec---
Confidence 44555555555543 11 234577 8998774 35789999999999999863 47899993
Q ss_pred CCHHHHHHHHHHHHHHHH
Q psy6547 242 ITEQELREGLDIIINTIN 259 (266)
Q Consensus 242 ~t~~~i~~~~~~l~~~~~ 259 (266)
.+++++++++++|+++++
T Consensus 339 ~~~~~~~~~l~~L~~~l~ 356 (357)
T PRK14809 339 GTREETERAVEVLNEVLA 356 (357)
T ss_pred CCHHHHHHHHHHHHHHhc
Confidence 367899999999998764
No 206
>TIGR03801 asp_4_decarbox aspartate 4-decarboxylase. This enzyme, aspartate 4-decarboxylase (EC 4.1.1.12), removes the side-chain carboxylate from L-aspartate, converting it to L-alanine plus carbon dioxide. It is a PLP-dependent enzyme, homologous to aspartate aminotransferase (EC 2.6.1.1).
Probab=99.85 E-value=6.1e-20 Score=163.73 Aligned_cols=224 Identities=14% Similarity=0.126 Sum_probs=141.5
Q ss_pred CHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhc--CCEEEEeccccCcCCcCcccccccCCCCcCe
Q psy6547 27 DVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQY--NVLFIADEVQTGLGRTGKLLAIHYEDVRPDI 104 (266)
Q Consensus 27 d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~--g~~li~De~~~~~~~~g~~~~~~~~~~~~d~ 104 (266)
|.+++++++ ++++++++++.++||+|.+ ++.+.+++|+++|++| +++||+||+|..|.................+
T Consensus 229 d~~~l~~~~--~~~~kai~l~nP~NPTG~v-ls~e~l~~I~~ia~~~~~~l~II~DEvY~~f~~~~~sl~~~~~~~vI~v 305 (521)
T TIGR03801 229 PDKELEKLR--DPSIKALFVVNPSNPPSVA-MSDESIEKIVDIVANDRPDLMILTDDVYGTFVDDFRSLFAELPYNTIGV 305 (521)
T ss_pred CHHHHHHhc--CCCCcEEEEeCCCCCCCCC-CCHHHHHHHHHHHHhcCCCeEEEECCCchhhcccccchhhhCCCCEEEE
Confidence 567888776 5578999977778888877 9999999999999987 9999999999776421111111111223445
Q ss_pred eeeccccc-CCchhhhhheecHH-----hhhc--------cC------------------------CCCCCCCCCCcHHH
Q psy6547 105 VILGKALS-GGLYPISAVLADDE-----VMGT--------LV------------------------PGTHGSTYGGNPLA 146 (266)
Q Consensus 105 ~~~sK~~~-~g~~~~g~~~~~~~-----~~~~--------~~------------------------~~~~~~~~~~~~~~ 146 (266)
.+|||.++ +| ||+||++++++ +++. +. .....++.+.+.+.
T Consensus 306 ~SfSK~fg~~G-~RlG~i~~~~~~v~d~li~~lp~~~~~~l~~ry~~~~~~p~~~~fidr~vadsr~v~~~~~~g~s~p~ 384 (521)
T TIGR03801 306 YSFSKYFGATG-WRLGTIALHKDNIFDKLIAELPEEKKKELDKRYSSLTTEPRKLKFIDRLVADSRQVALNHTAGLSTPQ 384 (521)
T ss_pred EcchhhccCch-hhhhhhhcCchHHHHHHHHhccHHHHHHHhhhhccccCChhhhhhHHHHHHHHHHHHHhccCCCCcHH
Confidence 55999998 89 99999998764 2211 11 11123344455555
Q ss_pred HH--H---HHHHHHHHhh--ccHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCc-----------
Q psy6547 147 CK--L---AMTALDVILE--ENMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSA----------- 208 (266)
Q Consensus 147 ~~--a---~~~~l~~~~~--~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~----------- 208 (266)
+. + +.+.++.... ++..+.++++.+.+.+.| +.. +.......+. ++++++..-.
T Consensus 385 Q~q~al~a~~all~~~~~y~~~~~~~~~~R~~~l~~~L----g~~-~~~~~~~g~~---Y~~~di~~~~~~~~~~~f~~~ 456 (521)
T TIGR03801 385 QVQMALFSLFALMDKENAYKAETKDICRRREKLLFRGL----GLP-LQEDPNDVAY---YTLIDLEEWAEKNYGEEFSSY 456 (521)
T ss_pred HHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHhc----CCC-CcCCCCCeEE---EEEeehHHHHHHhcchHHHHH
Confidence 44 2 2333321111 223445555555555554 211 1111234566 7777776310
Q ss_pred ---cchHHHHHHHHH-HCCceeccC-----CCCEEEEeccCCCCHHHHHHHHHHHHHHHHHHhh
Q psy6547 209 ---ILEVYDVCIKMK-DAGLVTKPI-----SNNIIRLSPALNITEQELREGLDIIINTINTMAA 263 (266)
Q Consensus 209 ---~~~~~~~~~~l~-~~gi~~~~~-----~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~~~ 263 (266)
..+..+|+.+|. +.||.+.|+ ..+++|+|+. ..+++++.++.++|++++++...
T Consensus 457 l~~~~~~~~~~~~L~~e~gV~v~PG~~Fg~~~~~vRisla-~l~~~~~~~~~~rl~~~~~~~~~ 519 (521)
T TIGR03801 457 LKKNYSPVDVLFRLAEETGIVLLPGGGFGGPEWSVRVSLA-NLNEYDYAEIGRAIRKILDEYYE 519 (521)
T ss_pred HhccCCHHHHHHHHHHhCCEEEeCchhcCCCCCeEEEEec-CCCHHHHHHHHHHHHHHHHHHHH
Confidence 114677888887 569999986 2357999952 36899999999999999977543
No 207
>PRK05387 histidinol-phosphate aminotransferase; Provisional
Probab=99.84 E-value=2.6e-20 Score=161.10 Aligned_cols=223 Identities=15% Similarity=0.180 Sum_probs=153.0
Q ss_pred cCCCCCCceeecCC-----CHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcC
Q psy6547 13 FGPHMPGYNIIPYN-----DVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLG 87 (266)
Q Consensus 13 ~~~~~~~v~~~~~~-----d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~ 87 (266)
...++.+++.++.. |++++++ ..+++++..++|++|.+ ++.+.+++|.+.++ ++++|+||+|..|+
T Consensus 118 ~~~~g~~~~~v~~~~~~~~d~~~l~~------~~~~v~~~~P~NPtG~~-~~~~~~~~l~~~~~--~~~livDe~y~~~~ 188 (353)
T PRK05387 118 AGLYGIPYEEIPLDDDFSIDVEDYLR------PNGGIIFPNPNAPTGIA-LPLAEIERILAANP--DSVVVIDEAYVDFG 188 (353)
T ss_pred HHHcCCEEEEeecCCCCCCCHHHHHh------cCCEEEEeCCCCCCCCC-CCHHHHHHHHHhCC--CcEEEEeCcccccC
Confidence 34556777777653 4565542 23556666668888987 77777777776543 99999999997774
Q ss_pred CcCcccccccCCCCcCeeeeccccc-CCchhhhhheecHHhhhccCCCCCC-CCCCCcHHHHHHHHHHHHHHh-hccHHH
Q psy6547 88 RTGKLLAIHYEDVRPDIVILGKALS-GGLYPISAVLADDEVMGTLVPGTHG-STYGGNPLACKLAMTALDVIL-EENMIE 164 (266)
Q Consensus 88 ~~g~~~~~~~~~~~~d~~~~sK~~~-~g~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~a~~~~l~~~~-~~~~~~ 164 (266)
........+.......+.++||.++ +| +|+||+++++++.+.+...... .+++.+.+++.++..+++..+ -++..+
T Consensus 189 ~~~~~~~~~~~~~~i~~~S~SK~~~~~G-lR~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~ 267 (353)
T PRK05387 189 GESAIPLIDRYPNLLVVQTFSKSRSLAG-LRVGFAIGHPELIEALNRVKNSFNSYPLDRLAQAGAIAAIEDEAYFEETRA 267 (353)
T ss_pred CcchHHHHhhCCCEEEEEehhHhhcchh-hhceeeecCHHHHHHHHHhhccCCCCCcCHHHHHHHHHHhcCHHHHHHHHH
Confidence 2111111122223344455999999 99 9999999999988877654322 356678888888877775321 134566
Q ss_pred HHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccC----CCCEEEEeccC
Q psy6547 165 NAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPI----SNNIIRLSPAL 240 (266)
Q Consensus 165 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~----~~~~iR~~~~~ 240 (266)
+++++++.+.+.|++ .+. .. .+..|. ++|+.++. .++.+++++|.++||.+++. ..+++|++++
T Consensus 268 ~~~~~~~~l~~~L~~-~g~---~~-~~~~~~---~~~~~~~~---~~~~~~~~~l~~~gi~v~~~~~~~~~~~iRis~~- 335 (353)
T PRK05387 268 KVIATRERLVEELEA-LGF---EV-LPSKAN---FVFARHPS---HDAAELAAKLRERGIIVRHFNKPRIDQFLRITIG- 335 (353)
T ss_pred HHHHHHHHHHHHHHH-CCC---eE-CCCcCc---EEEEECCC---CCHHHHHHHHHHCCEEEEECCCCCCCCeEEEEeC-
Confidence 777788888888877 432 21 223456 78877653 46788999999999999654 2468999943
Q ss_pred CCCHHHHHHHHHHHHHHHH
Q psy6547 241 NITEQELREGLDIIINTIN 259 (266)
Q Consensus 241 ~~t~~~i~~~~~~l~~~~~ 259 (266)
+++++++++++|++++.
T Consensus 336 --~~~~~~~~~~~L~~~~~ 352 (353)
T PRK05387 336 --TDEEMEALVDALKEILA 352 (353)
T ss_pred --CHHHHHHHHHHHHHHhh
Confidence 77999999999998764
No 208
>KOG0257|consensus
Probab=99.84 E-value=4e-21 Score=161.11 Aligned_cols=216 Identities=17% Similarity=0.264 Sum_probs=161.3
Q ss_pred CHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCc---ccc--cccCCCC
Q psy6547 27 DVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGK---LLA--IHYEDVR 101 (266)
Q Consensus 27 d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~---~~~--~~~~~~~ 101 (266)
|.++||..+ .+++++|+++.++|++|-+ .+++.|++|+++|++||+++|.||+|..+...|. .++ -..+.+.
T Consensus 161 D~~~le~~~--t~kTk~Ii~ntPhNPtGkv-fsReeLe~ia~l~~k~~~lvisDevYe~~v~d~~~h~r~aslPgm~ert 237 (420)
T KOG0257|consen 161 DPEELESKI--TEKTKAIILNTPHNPTGKV-FSREELERIAELCKKHGLLVISDEVYEWLVYDGNKHIRIASLPGMYERT 237 (420)
T ss_pred ChHHHHhhc--cCCccEEEEeCCCCCcCcc-cCHHHHHHHHHHHHHCCEEEEEhhHhHHHhhCCCcceeeecCCchhheE
Confidence 899999999 7789999999999999988 8999999999999999999999999966544443 122 2234456
Q ss_pred cCeeeeccccc-CCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHhh----------ccHHHHHHHHH
Q psy6547 102 PDIVILGKALS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILE----------ENMIENAYKMG 170 (266)
Q Consensus 102 ~d~~~~sK~~~-~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~----------~~~~~~~~~~~ 170 (266)
..+.++||+++ .| ||+||+++++.+...+....+...++.++..+.|..+++..-.. .++.+.+++++
T Consensus 238 itvgS~gKtf~~TG-WrlGW~igp~~L~~~~~~vh~~~~~~~~Tp~q~A~a~a~~~~~~~~~p~~~y~~~~~~~~y~~kr 316 (420)
T KOG0257|consen 238 ITVGSFGKTFGVTG-WRLGWAIGPKHLYSALFPVHQNFVFTCPTPIQEASAAAFALELACLQPGGSYFITELVKEYKEKR 316 (420)
T ss_pred EEeccccceeeeee-eeeeeeechHHhhhhHHHHhhccccccCcHHHHHHHHHHhhhhhccCCcchhHHHHHHHHHHHHH
Confidence 77777999999 89 99999999888888888777777787777777777766654331 13667788999
Q ss_pred HHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCc------c----chHHHHHHHHH-HCCceeccCC---------
Q psy6547 171 EIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSA------I----LEVYDVCIKMK-DAGLVTKPIS--------- 230 (266)
Q Consensus 171 ~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~------~----~~~~~~~~~l~-~~gi~~~~~~--------- 230 (266)
+.+.+.|.+ ++.+... +..+- ++|.+++... + .+...++.+|. +.|+.+-|..
T Consensus 317 dil~k~L~~-lg~~v~~---p~gay---yl~adfs~~~~~~~~~~~~~~~~d~~~~~wl~~~~Gv~~IP~saF~s~~~~~ 389 (420)
T KOG0257|consen 317 DILAKALEE-LGLKVTG---PEGAY---YLWADFSLAKSWPFFEEILEKPDDFKFVRWLIKEGGVVVIPPSAFGSREHIK 389 (420)
T ss_pred HHHHHHHHh-cCCcccc---CCCce---EEEEeccccccCCcchhhccCCCceeeehhhhccCcEEEeCchhcCCchhhH
Confidence 999999998 6543321 12333 7887777211 1 12345678876 5588887752
Q ss_pred --CCEEEEeccCCCCHHHHHHHHHHHH
Q psy6547 231 --NNIIRLSPALNITEQELREGLDIII 255 (266)
Q Consensus 231 --~~~iR~~~~~~~t~~~i~~~~~~l~ 255 (266)
.+.+|++ ..-+++.++++.++++
T Consensus 390 ~~~~~~r~~--~~k~~~~L~~a~e~l~ 414 (420)
T KOG0257|consen 390 VAERLVRFC--FCKADETLRKAIERLK 414 (420)
T ss_pred HHHHHHHHH--HHhhHHHHHHHHHHHh
Confidence 3567777 5677788888888887
No 209
>PRK09105 putative aminotransferase; Provisional
Probab=99.84 E-value=3.7e-20 Score=160.99 Aligned_cols=224 Identities=13% Similarity=0.049 Sum_probs=153.3
Q ss_pred cccCCCCCCceeecCC-----CHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccC
Q psy6547 11 NEFGPHMPGYNIIPYN-----DVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTG 85 (266)
Q Consensus 11 ~~~~~~~~~v~~~~~~-----d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~ 85 (266)
..+..++.+++.++.+ |++++++.. +++++++++.++|++|.+ ++.+.++++.+.+ ++++++|+||+|..
T Consensus 134 ~~~~~~g~~~~~v~~~~~~~~d~~~l~~~~---~~~~~v~l~nP~NPTG~~-~~~~~l~~l~~~~-~~~~~lIvDEaY~~ 208 (370)
T PRK09105 134 RAADAQGAPVAKVPLRADGAHDVKAMLAAD---PNAGLIYICNPNNPTGTV-TPRADIEWLLANK-PAGSVLLVDEAYIH 208 (370)
T ss_pred HHHHHcCCeEEEecCCCCCCCCHHHHHhcC---CCCCEEEEeCCCCCCCcC-cCHHHHHHHHHhC-CCCcEEEEECchHH
Confidence 3345567777777653 566666542 356777777778889987 8999999998875 45999999999976
Q ss_pred cCCcCcccccc-cCCCCcCeeeeccccc-CCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHhh-ccH
Q psy6547 86 LGRTGKLLAIH-YEDVRPDIVILGKALS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILE-ENM 162 (266)
Q Consensus 86 ~~~~g~~~~~~-~~~~~~d~~~~sK~~~-~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~-~~~ 162 (266)
|.......... .......+.+|||.++ +| +|+||+++++++++.+... ..+..+.+.+.++.++++..+- +..
T Consensus 209 f~~~~s~~~~~~~~~~vi~~~SfSK~~g~~G-lRiG~~v~~~~~i~~l~~~---~~~~~~~~~~~aa~~~L~~~~~~~~~ 284 (370)
T PRK09105 209 FSDAPSVVDLVAQRKDLIVLRTFSKLYGMAG-MRLGLAAARPDLLAKLARF---GHNPLPVPAAAAGLASLRDPKLVPQR 284 (370)
T ss_pred hccCcchHHHHhhCCCEEEEecccHhhcCCc-cceeeeecCHHHHHHHHhc---CCCCcCHHHHHHHHHHHhCHHHHHHH
Confidence 64211111111 1112233345999998 89 9999999999988877653 3344666777777777753111 335
Q ss_pred HHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceecc---CCCCEEEEecc
Q psy6547 163 IENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKP---ISNNIIRLSPA 239 (266)
Q Consensus 163 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~---~~~~~iR~~~~ 239 (266)
.++++++++.+.+.|++ .+. .. ..+.|. |+++.++. +..++++.|.++||.+.. ...+++|+++
T Consensus 285 ~~~~~~~r~~l~~~L~~-~g~---~~-~~~~~~---f~~~~~~~----~~~~l~~~L~~~gI~v~~~~~~~~~~~Ris~- 351 (370)
T PRK09105 285 RAENAAVREDTIAWLKK-KGY---KC-TPSQAN---CFMVDVKR----PAKAVADAMAKQGVFIGRSWPIWPNWVRVTV- 351 (370)
T ss_pred HHHHHHHHHHHHHHHHH-CCC---Cc-CCCCCc---EEEEeCCC----CHHHHHHHHHHCCcEEecCCCCCCCeEEEEc-
Confidence 56677777788888877 432 22 234466 77665543 568899999999999842 1358999993
Q ss_pred CCCCHHHHHHHHHHHHHHH
Q psy6547 240 LNITEQELREGLDIIINTI 258 (266)
Q Consensus 240 ~~~t~~~i~~~~~~l~~~~ 258 (266)
.++++++++++.|++.+
T Consensus 352 --~~~~~~~~l~~al~~~~ 368 (370)
T PRK09105 352 --GSEEEMAAFRSAFAKVM 368 (370)
T ss_pred --CCHHHHHHHHHHHHHHh
Confidence 37888999999998765
No 210
>TIGR03576 pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 family. Members of this archaeal protein family are pyridoxal phosphate enzymes of unknown function. Sequence similarity to SelA, a bacterial enzyme of selenocysteine biosynthesis, has led to some members being misannotated as functionally equivalent, but selenocysteine is made on tRNA in Archaea by a two-step process that does not involve a SelA homolog.
Probab=99.84 E-value=1.2e-19 Score=155.94 Aligned_cols=213 Identities=8% Similarity=0.026 Sum_probs=145.6
Q ss_pred ecCCCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCc--CCcCcccccccCCC
Q psy6547 23 IPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGL--GRTGKLLAIHYEDV 100 (266)
Q Consensus 23 ~~~~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~--~~~g~~~~~~~~~~ 100 (266)
+.++++++++. .+++++|++++ .+++|.+ ++.+++++|+++|+++|+++++||+|..+ +..|.. ....++.
T Consensus 123 ~~~~~l~~l~~----~~~~~lIiitg-~s~~G~v-~~~~~L~~i~~la~~~~~~livDEAy~~~~~~~~~~~-~~~~~~~ 195 (346)
T TIGR03576 123 FESDELSELKK----IDGTSLVVITG-STMDLKV-VSEEDLKRVIKQAKSKEAIVLVDDASGARVRRLYGQP-PALDLGA 195 (346)
T ss_pred eccCCHHHHhh----CcCceEEEEEC-CCCCCcc-cCHHHHHHHHHHHHHcCCEEEEECCccccccccCCCC-CHHHcCC
Confidence 44566666432 23567888876 4778877 68899999999999999999999999542 112321 1112333
Q ss_pred CcCeeeecccccCCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhcc
Q psy6547 101 RPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSSP 180 (266)
Q Consensus 101 ~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~ 180 (266)
+.-+.++||++ +| +++||+++++++++.+........++.+++.++++.++|+....+...+.++++.+.+.+.+..
T Consensus 196 divv~s~SKal-aG-~r~G~v~~~~~li~~l~~~~~~~~~s~~~~~~~aa~~aL~~~~~~~~~~~l~~r~~~~~~~l~~- 272 (346)
T TIGR03576 196 DLVVTSTDKLM-DG-PRGGLLAGRKELVDKIKSVGEQFGLEAQAPLLAAVVRALEEFELSRIRDAFKRKEEVYLRLFDK- 272 (346)
T ss_pred cEEEeccchhc-cc-cceEEEEeCHHHHHHHHHhhcCcccCccHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHh-
Confidence 34445599976 45 7899999999999888765555455568889999999998655455667777777777777764
Q ss_pred cccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccCC-----CCEEEEeccCCCCHH---HHHHHHH
Q psy6547 181 ANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPIS-----NNIIRLSPALNITEQ---ELREGLD 252 (266)
Q Consensus 181 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~-----~~~iR~~~~~~~t~~---~i~~~~~ 252 (266)
+. . .+..++ |+++.++. ..+.+...+.|.++||.++|+. .+++|++ +..+++ +++++++
T Consensus 273 ~~-----~-~~~~~~---f~~~~~~~--~~~~~~~~~ll~~~gV~v~~~~~f~~~~~~vRis--~~~~~~~~~~~~~~~~ 339 (346)
T TIGR03576 273 LN-----V-ERTPTG---FVIKGVEE--EKLIEIGLDLLRNYGIITITAVGMPGASKTLRFD--LAAKDAERIGDDYLVE 339 (346)
T ss_pred CC-----C-CcCCCe---EEEEeCCC--CCHHHHHHHHHHhCCEEEeCCcccCCCCCeEEEE--EecChHHhcCHHHHHH
Confidence 32 1 122344 78877754 1123344455568899999852 5799999 344444 7899999
Q ss_pred HHHHHH
Q psy6547 253 IIINTI 258 (266)
Q Consensus 253 ~l~~~~ 258 (266)
.|++.+
T Consensus 340 al~~~~ 345 (346)
T TIGR03576 340 AVKDSL 345 (346)
T ss_pred HHHhcc
Confidence 987754
No 211
>PRK09295 bifunctional cysteine desulfurase/selenocysteine lyase; Validated
Probab=99.84 E-value=4.2e-19 Score=156.43 Aligned_cols=224 Identities=16% Similarity=0.096 Sum_probs=160.2
Q ss_pred CCCCceeecCC-----CHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcC
Q psy6547 16 HMPGYNIIPYN-----DVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTG 90 (266)
Q Consensus 16 ~~~~v~~~~~~-----d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g 90 (266)
.+.+++.++.+ |+++|++++ .+++++++++.++|++|.+. ++++|.++|+++|+++++|++|+ ++.
T Consensus 137 ~g~~v~~v~~~~~~~~d~~~l~~~i--~~~t~lv~l~~~~n~tG~~~----~~~~i~~~~~~~~~~vivD~a~~-~g~-- 207 (406)
T PRK09295 137 VGAELRVIPLNPDGTLQLETLPALF--DERTRLLAITHVSNVLGTEN----PLAEMIALAHQHGAKVLVDGAQA-VMH-- 207 (406)
T ss_pred cCcEEEEEecCCCCCCCHHHHHHhc--CCCcEEEEEecchhcccccC----CHHHHHHHHHHcCCEEEEEcccc-cCc--
Confidence 45667777643 789999998 44689999999999999987 79999999999999999999994 322
Q ss_pred cccccccCCCCcCeeeecccccCCchhhhhheecHHhhhccCCCCC----------------------CCCCCCcHHHHH
Q psy6547 91 KLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTH----------------------GSTYGGNPLACK 148 (266)
Q Consensus 91 ~~~~~~~~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~ 148 (266)
..+.+..++.+.-+.+++|.+++ ..+|+++.++++.+.+.+... ...-+.+..+..
T Consensus 208 ~~~~~~~~~~D~~~~s~~K~~gp--~G~G~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~r~e~GT~~~~~~~ 285 (406)
T PRK09295 208 HPVDVQALDCDFYVFSGHKLYGP--TGIGILYVKEALLQEMPPWEGGGSMIATVSLTEGTTWAKAPWRFEAGTPNTGGII 285 (406)
T ss_pred cccCchhcCCCEEEeehhhccCC--CCcEEEEEchHhHhhCCCcccCCceeeeeecCCccccCCchhhcCCCCccHHHHH
Confidence 12233333433333446696662 348999998887765542111 112256777788
Q ss_pred HHHHHHHHHhh---ccHHHHHHHHHHHHHHHhhccccc-CCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCc
Q psy6547 149 LAMTALDVILE---ENMIENAYKMGEIFRSELSSPANK-SKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGL 224 (266)
Q Consensus 149 a~~~~l~~~~~---~~~~~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi 224 (266)
++.++++.+.+ +...++.+++.+++++.|.+ +.. ..+.. ...+. ++.|.++. .+++++.+.|.++||
T Consensus 286 ~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~-~~~~~~~~~--~~~~~---iv~~~~~~---~~~~~~~~~L~~~gI 356 (406)
T PRK09295 286 GLGAALDYVSALGLNNIAEYEQNLMHYALSQLES-VPDLTLYGP--QNRLG---VIAFNLGK---HHAYDVGSFLDNYGI 356 (406)
T ss_pred HHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhc-CCCEEEeCC--CCCce---EEEEEECC---cCHHHHHHHHHhCCe
Confidence 88888888765 35678888889999998887 432 11111 11123 77777654 356788889999999
Q ss_pred eeccCC------------CCEEEEeccCCCCHHHHHHHHHHHHHHHH
Q psy6547 225 VTKPIS------------NNIIRLSPALNITEQELREGLDIIINTIN 259 (266)
Q Consensus 225 ~~~~~~------------~~~iR~~~~~~~t~~~i~~~~~~l~~~~~ 259 (266)
.++.+. .+.+|+|++..+|++|+|++++.|+++..
T Consensus 357 ~v~~g~~c~~~~~~~~~~~~~iRiS~~~ynt~~did~l~~~l~~i~~ 403 (406)
T PRK09295 357 AVRTGHHCAMPLMAYYNVPAMCRASLAMYNTHEEVDRLVAGLQRIHR 403 (406)
T ss_pred EEeccccchHHHHHHHCCCCEEEEEccCCCCHHHHHHHHHHHHHHHH
Confidence 997542 35799999999999999999999988743
No 212
>cd00613 GDC-P Glycine cleavage system P-protein, alpha- and beta-subunits. This family consists of Glycine cleavage system P-proteins EC:1.4.4.2 from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex EC:2.1.2.10 (GDC) also annotated as glycine cleavage system or glycine synthase. GDC consists of four proteins P, H, L and T. The reaction catalysed by this protein is: Glycine + lipoylprotein <= S-aminomethyldihydrolipoylprotein + CO2. Alpha-beta-type dimers associate to form an alpha(2)beta(2) tetramer, where the alpha- and beta-subunits are structurally similar and appear to have arisen by gene duplication and subsequent divergence with a loss of one active site. The members of this CD are widely dispersed among all three forms of cellular life.
Probab=99.84 E-value=1.4e-19 Score=159.02 Aligned_cols=221 Identities=16% Similarity=0.142 Sum_probs=150.6
Q ss_pred CCceeecCC-----CHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCcc
Q psy6547 18 PGYNIIPYN-----DVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKL 92 (266)
Q Consensus 18 ~~v~~~~~~-----d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~ 92 (266)
.+++.++++ |++++++.+ .+++++|++++++ ++|.+ .+++++|+++|++||+++|+|++|......
T Consensus 134 ~~~~~v~~~~~~~~d~~~l~~~i--~~~t~~viv~~~~-~~G~~---~~~l~~i~~la~~~g~~livD~~~~~~~~~--- 204 (398)
T cd00613 134 IEVVEVPSDEGGTVDLEALKEEV--SEEVAALMVQYPN-TLGVF---EDLIKEIADIAHSAGALVYVDGDNLNLTGL--- 204 (398)
T ss_pred cEEEEeccCCCCCcCHHHHHHhc--CCCeEEEEEECCC-CCcee---cchHHHHHHHHHhcCCEEEEEeccccccCC---
Confidence 677777764 678999988 5578999998865 66766 255799999999999999999988432111
Q ss_pred cccccCCCCcCeeeeccccc----CCchhhhhheecHHhhhccCCC-----------------------------CCCCC
Q psy6547 93 LAIHYEDVRPDIVILGKALS----GGLYPISAVLADDEVMGTLVPG-----------------------------THGST 139 (266)
Q Consensus 93 ~~~~~~~~~~d~~~~sK~~~----~g~~~~g~~~~~~~~~~~~~~~-----------------------------~~~~~ 139 (266)
.....++.+.-+.+++|++. || +++|++..++++.+.+... ....+
T Consensus 205 ~~~~~~~~d~~~~s~~K~~~p~g~Gg-p~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~e~~~~~~ 283 (398)
T cd00613 205 KPPGEYGADIVVGNLQKTGVPHGGGG-PGAGFFAVKKELVRFLPGRLVGVTKDAEGNRAFRLALQTREQHIRREKATSNI 283 (398)
T ss_pred CChHHcCCCEEEeeccccCCCCCCCC-CceeEEEEhhhhHhhCCCCeeccccccCCCcceEEecccchhhcccccccccc
Confidence 11122343333344888873 35 7889999988877665221 01223
Q ss_pred CCCcHHHHHHHHHHHHHHhhc---cHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHH
Q psy6547 140 YGGNPLACKLAMTALDVILEE---NMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVC 216 (266)
Q Consensus 140 ~~~~~~~~~a~~~~l~~~~~~---~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 216 (266)
++.+++.+.++..+++.+..+ ++.+++++++++++++|++ ++...... +...+.+++.++...+.++.+++
T Consensus 284 ~~~~~~~~~~a~~~l~~~~~~g~~~~~~~~~~~~~~l~~~L~~-~~~~~~~~-----~~~~~~v~~~~~~~~~~~~~~~~ 357 (398)
T cd00613 284 CTGQALLALMAAMYIVYLGPEGLKEIAERAHLNANYLAKRLKE-VGGVLPFN-----GPFFHEFVLRLPPLYGIRAEDLA 357 (398)
T ss_pred eecHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHh-cCCcccCC-----CCeeEEEEEEcCCcchHHHHHHH
Confidence 445556666666666665543 4668899999999999988 54322111 11011345555431023678899
Q ss_pred HHHHHCCceeccC---CCCEEEEeccCCCCHHHHHHHHHHH
Q psy6547 217 IKMKDAGLVTKPI---SNNIIRLSPALNITEQELREGLDII 254 (266)
Q Consensus 217 ~~l~~~gi~~~~~---~~~~iR~~~~~~~t~~~i~~~~~~l 254 (266)
++|.++||.+... ..+.+|++++..+|++|+|++++.|
T Consensus 358 ~~L~~~gi~~~~~~~~~~~~lRis~~~~~t~edid~~~~~L 398 (398)
T cd00613 358 KALIDGGFHAPTMYLPVDGTLMIEPTETETKEELDALLEAL 398 (398)
T ss_pred HhhhhcCccccccccCCCCeEEEEcCCCCCHHHHHHHHHhC
Confidence 9999999987653 5689999999999999999998864
No 213
>COG0520 csdA Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones]
Probab=99.84 E-value=5.1e-19 Score=154.17 Aligned_cols=224 Identities=21% Similarity=0.261 Sum_probs=166.0
Q ss_pred CCCceeecCC-----CHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCc
Q psy6547 17 MPGYNIIPYN-----DVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGK 91 (266)
Q Consensus 17 ~~~v~~~~~~-----d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~ 91 (266)
+.+|+.+|.+ ++++++.++ +++++++.++.+.|.+|.+. ++++|.++||++|+++++|.+|+ .+. .
T Consensus 136 Ga~v~~i~~~~~g~~~~~~~~~~i--~~~Tklvais~vSn~tG~~~----pv~~I~~la~~~ga~v~VDaaq~-~~h--~ 206 (405)
T COG0520 136 GAKVRVIPLDDDGLLDLDALEKLI--TPKTKLVALSHVSNVTGTVN----PVKEIAELAHEHGALVLVDAAQA-AGH--L 206 (405)
T ss_pred CcEEEEEecCCCCCcCHHHHHHhc--CCCceEEEEECccccccccc----hHHHHHHHHHHcCCEEEEECccc-cCc--c
Confidence 4467777753 578899888 67899999999999999998 99999999999999999999994 211 1
Q ss_pred ccccccCCCCcCeeee--cccccCCchhhhhheecHHhhhccCCCCCC------------CCC----------CCcHHHH
Q psy6547 92 LLAIHYEDVRPDIVIL--GKALSGGLYPISAVLADDEVMGTLVPGTHG------------STY----------GGNPLAC 147 (266)
Q Consensus 92 ~~~~~~~~~~~d~~~~--sK~~~~g~~~~g~~~~~~~~~~~~~~~~~~------------~~~----------~~~~~~~ 147 (266)
...++. .+.|+..| .|++.|+ ..+|.+.+++++++.+.+...+ .++ +++....
T Consensus 207 ~idv~~--l~~Df~afsgHKwl~gP-~GiGvLy~r~~~l~~l~P~~~gg~~~~~~~~~~~~~~~~~p~rfe~gTpn~~~~ 283 (405)
T COG0520 207 PIDVQE--LGCDFLAFSGHKWLLGP-TGIGVLYVRKELLEELEPFLGGGGMIEYVSRDEGVTLAELPLRFEAGTPNIAGA 283 (405)
T ss_pred CCCchh--cCCCEEEEcccccccCC-CceEEEEEchHHHhhcCCcccCCCceeeecccccccccCcchhhccCCchHHHH
Confidence 223343 44555554 4987766 5699999999999888543111 111 4455555
Q ss_pred HHHHHHHHHHhh---ccHHHHHHHHHHHHHHHhhccccc-CCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCC
Q psy6547 148 KLAMTALDVILE---ENMIENAYKMGEIFRSELSSPANK-SKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAG 223 (266)
Q Consensus 148 ~a~~~~l~~~~~---~~~~~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~g 223 (266)
.+..++++.++. +++.++.+++.+++.++|++ +.. ..+.......+ |++.|.+.. .++.+++..|.++|
T Consensus 284 i~l~aAl~~~~~ig~~~i~~~e~~L~~~~~~~L~~-~~~v~i~g~~~~~r~---~~vsF~v~~---~~~~dv~~~L~~~g 356 (405)
T COG0520 284 IGLAAALDYLLEIGMEAIEAHERELTEYLLEGLSE-LPGVEIYGPPDADRG---GIVSFNVKG---IHPHDVATLLDEKG 356 (405)
T ss_pred HhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhc-CCCeEEecCCcccCc---eEEEEEeCC---CCHHHHHHHHHhCC
Confidence 555666666554 56889999999999999998 553 22221010123 488888877 47899999999999
Q ss_pred ceeccCC------------CCEEEEeccCCCCHHHHHHHHHHHHHHHH
Q psy6547 224 LVTKPIS------------NNIIRLSPALNITEQELREGLDIIINTIN 259 (266)
Q Consensus 224 i~~~~~~------------~~~iR~~~~~~~t~~~i~~~~~~l~~~~~ 259 (266)
|.++.+. ...+|+|+++++|++|+|++++.|++...
T Consensus 357 I~vr~g~~ca~p~~~~~~~~~~iR~S~~~YNt~edid~l~~aL~~~~~ 404 (405)
T COG0520 357 IAVRAGHHCAQPLHRLLGVDATIRASLHLYNTEEDVDRLLEALKKALA 404 (405)
T ss_pred eEEEeccccccHHHHhcCCCCceEEEEeecCCHHHHHHHHHHHHHHhh
Confidence 9988652 23399999999999999999999998764
No 214
>PRK14808 histidinol-phosphate aminotransferase; Provisional
Probab=99.84 E-value=2.9e-20 Score=159.55 Aligned_cols=224 Identities=12% Similarity=0.056 Sum_probs=152.4
Q ss_pred cCcccccCCCCCCceeecCCCHHHH-HHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccC
Q psy6547 7 PTSYNEFGPHMPGYNIIPYNDVDAL-EAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTG 85 (266)
Q Consensus 7 ~~~~~~~~~~~~~v~~~~~~d~~~l-~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~ 85 (266)
+.....+...+.+++.++.++-..+ +..+ . +++++++..++|++|.+ ++++.+++|. +++++||+||+|.+
T Consensus 107 ~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~--~-~~~~i~i~nP~NPTG~~-~s~~~l~~l~----~~~~~ii~DE~Y~~ 178 (335)
T PRK14808 107 SCYRIFAKAVGAKFLEVPLTKDLRIPEVNV--G-EGDVVFIPNPNNPTGHV-FEREEIERIL----KTGAFVALDEAYYE 178 (335)
T ss_pred HHHHHHHHHcCCeEEEecCCCcCCCChhHc--c-CCCEEEEeCCCCCCCCC-cCHHHHHHHH----hcCCEEEEECchhh
Confidence 3334445666778888875321001 1112 2 35788888888889987 6777776665 58999999999987
Q ss_pred cCCcCcccc-cccCCCCcCeeeeccccc-CCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHhh-ccH
Q psy6547 86 LGRTGKLLA-IHYEDVRPDIVILGKALS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILE-ENM 162 (266)
Q Consensus 86 ~~~~g~~~~-~~~~~~~~d~~~~sK~~~-~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~-~~~ 162 (266)
|.. ..... .........+.+|||.++ +| +|+||+++++++++.+.... ..++.+.+++.++..+++..+. ++.
T Consensus 179 f~~-~~~~~~~~~~~~vi~~~S~SK~~~l~G-lRvG~~v~~~~~~~~l~~~~--~~~~~~~~~q~a~~~~l~~~~~~~~~ 254 (335)
T PRK14808 179 FHG-ESYVDLLKKYENLAVIRTFSKAFSLAA-QRIGYVVSSEKFIDAYNRVR--LPFNVSYVSQMFAKVALDHREIFEER 254 (335)
T ss_pred hcC-CchHHHHHhCCCEEEEEechhhccCcc-cceEEEEeCHHHHHHHHHhc--CCCCCCHHHHHHHHHHHhCHHHHHHH
Confidence 731 11111 222233445556999999 89 99999999999988886533 3466778888888877764321 233
Q ss_pred HHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccCCCCEEEEeccCCC
Q psy6547 163 IENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNI 242 (266)
Q Consensus 163 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~iR~~~~~~~ 242 (266)
.+.+.+.++.+.+.|++ .+ +.. ..+.|. |+|+.++. .+..++.++|.++||.++.. .+++|++ ..
T Consensus 255 ~~~~~~~r~~l~~~L~~-~g---~~~-~~~~g~---f~~~~l~~---~~~~~~~~~l~~~Gi~V~~~-~~~~Ris---i~ 319 (335)
T PRK14808 255 TKFIVEERERMKSALRE-MG---YRI-TDSRGN---FVFIFMEK---EEKERLLEHLRAKNIAVRSF-REGVRIT---IG 319 (335)
T ss_pred HHHHHHHHHHHHHHHHH-CC---CEE-CCCCCe---EEEEeCCC---ccHHHHHHHHHHCCeEEEEC-CCCeEEe---cC
Confidence 44555666667777776 33 222 234577 99998874 24578999999999999976 5789999 45
Q ss_pred CHHHHHHHHHHHHHH
Q psy6547 243 TEQELREGLDIIINT 257 (266)
Q Consensus 243 t~~~i~~~~~~l~~~ 257 (266)
+.++.+++++.|+++
T Consensus 320 ~~~~~~~~~~~l~~~ 334 (335)
T PRK14808 320 KREENDMILKELEVF 334 (335)
T ss_pred CHHHHHHHHHHHHhh
Confidence 789999999988753
No 215
>PLN02409 serine--glyoxylate aminotransaminase
Probab=99.84 E-value=7.7e-19 Score=154.31 Aligned_cols=234 Identities=19% Similarity=0.176 Sum_probs=173.0
Q ss_pred CCCCCceeecCC-----CHHHHHHHHhcC--CCEEEEEEccccCCCCcccCChHHHHHHHHH--HHhcCCEEEEeccccC
Q psy6547 15 PHMPGYNIIPYN-----DVDALEAKLKSN--PNICAFMVEPIQGEAGAVVPDDGYLKKVRAL--CSQYNVLFIADEVQTG 85 (266)
Q Consensus 15 ~~~~~v~~~~~~-----d~~~l~~~l~~~--~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l--~~~~g~~li~De~~~~ 85 (266)
-++.+++.++.+ |++++++.++.+ +++++++++++.+++|.+. ++++|.++ |+++|+++|+|++++
T Consensus 105 ~~g~~v~~v~~~~~~~~~~~~l~~~l~~~~~~~~k~v~~~~~~~~tG~~~----~~~~i~~l~~~~~~g~~~vvD~v~s- 179 (401)
T PLN02409 105 RLNFDVDVVESPWGQGADLDILKSKLRQDTNHKIKAVCVVHNETSTGVTN----DLAGVRKLLDCAQHPALLLVDGVSS- 179 (401)
T ss_pred HcCCceEEEECCCCCCCCHHHHHHHHhhCcCCCccEEEEEeecccccccC----CHHHHHHHHhhhccCcEEEEEcccc-
Confidence 346677777643 689999999653 3689999999999999986 67777777 999999999999995
Q ss_pred cCCcCcccccccCCCCcCeeeecccccCCchhhhhheecHHhhhccCCCC----------------C--CCCCCCcHHHH
Q psy6547 86 LGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGT----------------H--GSTYGGNPLAC 147 (266)
Q Consensus 86 ~~~~g~~~~~~~~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~~~----------------~--~~~~~~~~~~~ 147 (266)
++ ...+..+.++++.-+.+.+|+++++ .++|+++.++++.+.+.... . ...++++....
T Consensus 180 ~g--~~~id~~~~~~D~~~~s~~K~l~~P-~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~Tp~~~~~ 256 (401)
T PLN02409 180 IG--ALDFRMDEWGVDVALTGSQKALSLP-TGLGIVCASPKALEASKTAKSPRVFFDWADYLKFYKLGTYWPYTPSIQLL 256 (401)
T ss_pred cC--CccccccccCccEEEEcCccccCcC-CCcceeEECHHHHHHHhcCCCCCeecCHHHHHHHHhcCCCCCCCccHHHH
Confidence 32 1223344455555555588999876 67999999998877664311 0 11346666677
Q ss_pred HHHHHHHHHHhh---ccHHHHHHHHHHHHHHHhhcccccCCCccc-EEecCccceeeEEEEeeCccchHHHHHHHHH-HC
Q psy6547 148 KLAMTALDVILE---ENMIENAYKMGEIFRSELSSPANKSKASFK-LSSGGLKKSINTLILSVSAILEVYDVCIKMK-DA 222 (266)
Q Consensus 148 ~a~~~~l~~~~~---~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~-~~ 222 (266)
.++..+++.+.. ++.+++.+++.+++++.|++ ++...+... ....+. ++++.+++ +.++.++.+.|. ++
T Consensus 257 ~al~~al~~~~~~G~e~i~~~~~~l~~~l~~~L~~-~g~~~~~~~~~~~s~~---v~~~~~p~--~~~~~~l~~~l~~~~ 330 (401)
T PLN02409 257 YGLRAALDLIFEEGLENVIARHARLGEATRLAVEA-WGLKLCTKKPEWRSDT---VTAVVVPE--GIDSAEIVKNAWKKY 330 (401)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH-cCCeeccCChhhcccc---eEEEeCCC--CCCHHHHHHHHHHhC
Confidence 788888887755 45788899999999999987 654333210 112334 66777776 667788988886 66
Q ss_pred CceeccC----CCCEEEEeccCCCCHHHHHHHHHHHHHHHHHHh
Q psy6547 223 GLVTKPI----SNNIIRLSPALNITEQELREGLDIIINTINTMA 262 (266)
Q Consensus 223 gi~~~~~----~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~~ 262 (266)
||.+..+ .+..+|++.+..++++|+.+++++|.+++.++.
T Consensus 331 ~i~i~~G~~~~~~~~~Rig~~g~~~~~~~~~~~~~~~~~l~~~g 374 (401)
T PLN02409 331 NLSLGLGLNKVAGKVFRIGHLGNVNELQLLGALAGVEMVLKDVG 374 (401)
T ss_pred CEEEEcCCCcccCCEEEEcCCCCCCHHHHHHHHHHHHHHHHHcC
Confidence 9999865 357899999999999999999999999998753
No 216
>TIGR01979 sufS cysteine desulfurases, SufS subfamily. This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved.
Probab=99.83 E-value=1e-18 Score=153.85 Aligned_cols=228 Identities=15% Similarity=0.117 Sum_probs=160.9
Q ss_pred CCCCceeecC-----CCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcC
Q psy6547 16 HMPGYNIIPY-----NDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTG 90 (266)
Q Consensus 16 ~~~~v~~~~~-----~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g 90 (266)
.+.+++.++. .|++++++.+ .++++++++..+++++|.+. ++++|.++|+++|+++++|++|+ .+.
T Consensus 132 ~g~~~~~v~~~~~~~~~~~~l~~~i--~~~~~lv~~~~~~~~tG~~~----~~~~i~~~~~~~~~~~ivD~a~~-~g~-- 202 (403)
T TIGR01979 132 TGATLKFIPLDDDGTLDLDDLEKLL--TEKTKLVAITHVSNVLGTVN----PVEEIAKLAHQVGAKVLVDGAQA-VPH-- 202 (403)
T ss_pred cCcEEEEEecCCCCCCCHHHHHHHh--ccCCeEEEEEcccccccccC----CHHHHHHHHHHcCCEEEEEchhh-cCc--
Confidence 4566667764 2689999998 45789999998899999987 79999999999999999999994 221
Q ss_pred cccccccCCCCcCeeeecccccCCchhhhhheecHHhhhccCCCCCC---------------------CCCCCcHHHHHH
Q psy6547 91 KLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHG---------------------STYGGNPLACKL 149 (266)
Q Consensus 91 ~~~~~~~~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~a 149 (266)
..+....++.+.-+.+++|.++ + ..+|++.+++++.+.+.+...+ ..-+.+...+.+
T Consensus 203 ~~~~~~~~~~d~~~~s~~K~~g-p-~G~g~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a 280 (403)
T TIGR01979 203 MPVDVQALDCDFYVFSGHKMYG-P-TGIGVLYGKEELLEQMPPFLGGGEMIAEVSFEETTYNEAPHKFEAGTPNIAGVIG 280 (403)
T ss_pred cccCccccCCCEEEEecccccC-C-CCceEEEEchHHHhcCCCeecCCCceeecccCccccCCChhhcCCCCccHHHHHH
Confidence 1223333444443445789876 2 3488898888877766432110 111345556677
Q ss_pred HHHHHHHHhh---ccHHHHHHHHHHHHHHHhhcccc-cCCCcc-cEEecCccceeeEEEEeeCccchHHHHHHHHHHCCc
Q psy6547 150 AMTALDVILE---ENMIENAYKMGEIFRSELSSPAN-KSKASF-KLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGL 224 (266)
Q Consensus 150 ~~~~l~~~~~---~~~~~~~~~~~~~l~~~l~~~~~-~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi 224 (266)
+..+++.+.. +.+.++..++++++++.|++ +. ...+.. .....+. ++.|.++. .+..++.+.|.++||
T Consensus 281 l~~al~~~~~~g~~~~~~~~~~l~~~l~~~l~~-~~g~~~~~~~~~~~~~~---~v~~~~~~---~~~~~~~~~L~~~gI 353 (403)
T TIGR01979 281 LGAAIDYLEAIGLENIEAHEHELTAYALERLGE-IPGLRIYGPRDAEDRGG---IISFNVEG---VHPHDVGTILDEEGI 353 (403)
T ss_pred HHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhc-CCCEEEeCCCCccccCc---eEEEEeCC---cCHHHHHHHHhhCCE
Confidence 7777777654 35778888999999998887 43 222211 0111244 77787754 356789999999999
Q ss_pred eeccCC------------CCEEEEeccCCCCHHHHHHHHHHHHHHHHHH
Q psy6547 225 VTKPIS------------NNIIRLSPALNITEQELREGLDIIINTINTM 261 (266)
Q Consensus 225 ~~~~~~------------~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~ 261 (266)
.++++. .+++|++++..+|++|++++++.|+++++.+
T Consensus 354 ~v~~g~~~~~~~~~~~~~~~~iRiS~~~~~t~~di~~l~~~l~~~~~~~ 402 (403)
T TIGR01979 354 AVRSGHHCAQPLMRRFGVPATCRASFYIYNTEEDIDALVEALKKVRKFF 402 (403)
T ss_pred EEcchhhhhHHHHHHhCCCCEEEEEeccCCCHHHHHHHHHHHHHHHHHh
Confidence 997642 5789999999999999999999999877653
No 217
>PRK07392 threonine-phosphate decarboxylase; Validated
Probab=99.83 E-value=1.5e-19 Score=156.84 Aligned_cols=230 Identities=13% Similarity=0.049 Sum_probs=149.6
Q ss_pred CcccccCCCCCCceeecCCC-------HHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEe
Q psy6547 8 TSYNEFGPHMPGYNIIPYND-------VDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIAD 80 (266)
Q Consensus 8 ~~~~~~~~~~~~v~~~~~~d-------~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~D 80 (266)
.+...+..++.+++.++..+ ..+++++.++.+++++++++.++|++|.+ ++ .++|.++++++++ +|+|
T Consensus 109 ~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~nP~NPTG~~-~~---~~~l~~l~~~~~~-~IiD 183 (360)
T PRK07392 109 DYRRALRAFGATVKELPLPLDQPSPGLTLRLQTLPPQLTPNDGLLLNNPHNPTGKL-WS---REAILPLLEQFAL-VVVD 183 (360)
T ss_pred HHHHHHHHcCCeEEEEecccccCCcccccCHHHHHHhccCCCEEEEeCCCCCCCCC-cC---HHHHHHHHHHCCE-EEEE
Confidence 33444556677888877531 23455554433456788877789999988 55 4566777788885 6669
Q ss_pred ccccCcCCcCcccc----cccCCCCcCeeeeccccc-CCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHHHH
Q psy6547 81 EVQTGLGRTGKLLA----IHYEDVRPDIVILGKALS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALD 155 (266)
Q Consensus 81 e~~~~~~~~g~~~~----~~~~~~~~d~~~~sK~~~-~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~ 155 (266)
|+|.+|...+...+ .........+.+|||.++ +| +|+||+++++++++.+.... ..++.+.+++.++..+++
T Consensus 184 E~y~~~~~~~~~~s~~~~~~~~~~vi~i~S~SK~~~l~G-lRiG~~v~~~~~~~~~~~~~--~~~~~s~~~q~~~~~~l~ 260 (360)
T PRK07392 184 EAFMDFLPPDAEQSLIPCLAEYPNLIILRSLTKFYSLPG-LRLGYAIAHPDRLQRWQQWR--DPWPVNGLAAAAAIAALA 260 (360)
T ss_pred CchhhhccCccccchHHHhhcCCCEEEEEechhhhcCCc-hheeeeeCCHHHHHHHHhhC--CCCCCCHHHHHHHHHHhc
Confidence 99988744332111 112222344555999999 99 99999999998888776432 346788889888888875
Q ss_pred HHh-hccHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHH-HHCCceeccC----
Q psy6547 156 VIL-EENMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKM-KDAGLVTKPI---- 229 (266)
Q Consensus 156 ~~~-~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l-~~~gi~~~~~---- 229 (266)
... .+...+.++++++.+.+.|+. +. .+.. ..+.|+ |+|+.++. ++.++++++ .++||.+.|+
T Consensus 261 ~~~~~~~~~~~~~~~r~~l~~~L~~-~~--~~~~-~~~~~~---fl~~~~~~----~~~~l~~~ll~~~gv~v~pg~~f~ 329 (360)
T PRK07392 261 DRDFQQQTWAWLPPAREALFQGLAS-LP--GLTP-LPSAAN---FLLVQSQG----SALQLQEKLLQQHRILIRDCLSFP 329 (360)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHh-CC--CcEE-CCCCCC---EEEEEcCC----CHHHHHHHHHhhCCEEEEeCCCCC
Confidence 321 122344566667777777766 32 2222 234567 88877754 567888886 5679999876
Q ss_pred --CCCEEEEeccCCCCHHHHHHHHHHHHHHHH
Q psy6547 230 --SNNIIRLSPALNITEQELREGLDIIINTIN 259 (266)
Q Consensus 230 --~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~ 259 (266)
+.+++|++.. +.++.+++.+.|++.++
T Consensus 330 ~~~~~~iRi~~~---~~~~~~~l~~al~~~~~ 358 (360)
T PRK07392 330 ELGDRYFRVAVR---TEAENQRLLEALAAILA 358 (360)
T ss_pred CCCCCEEEEEeC---CHHHHHHHHHHHHHHhh
Confidence 2379999933 45555666666665543
No 218
>PRK09257 aromatic amino acid aminotransferase; Provisional
Probab=99.83 E-value=1.5e-19 Score=158.72 Aligned_cols=237 Identities=17% Similarity=0.144 Sum_probs=156.8
Q ss_pred cCCcCcccccCCCCCCceeecC-------CCHHHHHHHHhcCC-CEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCC
Q psy6547 4 TTDPTSYNEFGPHMPGYNIIPY-------NDVDALEAKLKSNP-NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNV 75 (266)
Q Consensus 4 ~~~~~~~~~~~~~~~~v~~~~~-------~d~~~l~~~l~~~~-~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~ 75 (266)
.++|.....+.-.+.+++.++. .|++++++.+++.+ +.+++++.+.+|++|.+ ++.+.+++|+++|++||+
T Consensus 128 P~y~~~~~~~~~~g~~~v~v~~~~~~~~~~d~~~l~~~~~~~~~~~~~~i~~~p~NPTG~~-~s~~~~~~l~~~a~~~~~ 206 (396)
T PRK09257 128 PTWPNHRAIFEAAGLEVKTYPYYDAATKGLDFDAMLADLSQAPAGDVVLLHGCCHNPTGAD-LTPEQWDELAELLKERGL 206 (396)
T ss_pred CCcccHHHHHHHcCCcEEEEeccccccCccCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCC-CCHHHHHHHHHHHHhCCc
Confidence 3455566667778889998874 26889999886533 34555556678888877 999999999999999999
Q ss_pred EEEEeccccCcCCc-Cc-ccc---ccc-CCCCcCeeeeccccc-CCchhhhhhee---cHH----hhhccCCCCCCCCCC
Q psy6547 76 LFIADEVQTGLGRT-GK-LLA---IHY-EDVRPDIVILGKALS-GGLYPISAVLA---DDE----VMGTLVPGTHGSTYG 141 (266)
Q Consensus 76 ~li~De~~~~~~~~-g~-~~~---~~~-~~~~~d~~~~sK~~~-~g~~~~g~~~~---~~~----~~~~~~~~~~~~~~~ 141 (266)
+||+||+|.+|... +. ..+ +.. ......+.+|||.++ +| +|+||+++ +++ +.+.+.........+
T Consensus 207 ~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~vi~i~SfSK~~~~~G-lRiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (396)
T PRK09257 207 IPFLDIAYQGFGDGLEEDAYGLRAFAAAGLELLVASSFSKNFGLYG-ERVGALSVVAEDAEEADRVLSQLKATIRTNYSN 285 (396)
T ss_pred EEEEeccccccccchHHHHHHHHHHHhcCCcEEEEEEcCCcCcccc-ccceeEEEEeCCHHHHHHHHHHHHHHhhhhcCC
Confidence 99999999887532 11 111 111 123345566999999 59 99999873 333 333332222233334
Q ss_pred CcHHHHHHHHHHHHHH------hh--ccHHHHHHHHHHHHHHHhhcccccC-CCcccEEecCccceeeEEEEeeCccchH
Q psy6547 142 GNPLACKLAMTALDVI------LE--ENMIENAYKMGEIFRSELSSPANKS-KASFKLSSGGLKKSINTLILSVSAILEV 212 (266)
Q Consensus 142 ~~~~~~~a~~~~l~~~------~~--~~~~~~~~~~~~~l~~~l~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 212 (266)
.+++.+.++...++.. .. ++.+++++++++.+.+.|++ .... .+....+..|+ ++|+.++.
T Consensus 286 ~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~~~~rr~~l~~~L~~-~~~~~~~~~~~p~gg~---~~w~~l~~------ 355 (396)
T PRK09257 286 PPAHGAAIVATILNDPELRAEWEAELEEMRERIKAMRQLLVEALKA-KGPSRDFDFIARQRGM---FSYSGLTP------ 355 (396)
T ss_pred CcHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCCCcccccccceE---EEecCCCH------
Confidence 5677777776666421 11 23566777788888888877 4321 23332345677 88886632
Q ss_pred HHHHHHHHHCCceeccCCCCEEEEeccCCCCHHHHHHHHHHHHHH
Q psy6547 213 YDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINT 257 (266)
Q Consensus 213 ~~~~~~l~~~gi~~~~~~~~~iR~~~~~~~t~~~i~~~~~~l~~~ 257 (266)
+.+.+.+.++||.+.|.+ |++++ +.+++++++++++|.++
T Consensus 356 ~~~~~l~~~~~V~~~p~~----ri~~~-~~~~~~i~~~~~~i~~~ 395 (396)
T PRK09257 356 EQVDRLREEFGVYAVGSG----RINVA-GLNESNIDYVAEAIAAV 395 (396)
T ss_pred HHHHHHHHcCCEEEcCCC----eEEEe-eCCHHHHHHHHHHHHhh
Confidence 333444457799998852 88854 37999999999999875
No 219
>TIGR01976 am_tr_V_VC1184 cysteine desulfurase family protein, VC1184 subfamily. This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family (pfam00266). The most closely related characterized proteins are active as cysteine desulfurases, selenocysteine lyases, or both; some are involved in FeS cofactor biosynthesis and are designated NifS. An active site Cys residue present in those sequences, in motifs resembling GHHC or GSAC, is not found in this family. The function of members of this family is unknown, but seems unlike to be as an aminotransferase.
Probab=99.83 E-value=8.6e-19 Score=153.99 Aligned_cols=221 Identities=14% Similarity=0.093 Sum_probs=150.4
Q ss_pred CCCCceeecCC------CHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCc
Q psy6547 16 HMPGYNIIPYN------DVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRT 89 (266)
Q Consensus 16 ~~~~v~~~~~~------d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~ 89 (266)
.+.+++.++.+ |++++++.+ ++++++++++.++|++|.+. ++++|.++|+++|+++++|++|. .+ .
T Consensus 128 ~g~~~~~~~~~~~~~~~~~~~l~~~i--~~~~~lv~i~~~~n~tG~~~----~~~~i~~~~~~~~~~~ivD~a~~-~~-~ 199 (397)
T TIGR01976 128 AGAKVKWARVDEATGELHPDDLASLL--SPRTRLVAVTAASNTLGSIV----DLAAITELVHAAGALVVVDAVHY-AP-H 199 (397)
T ss_pred cCCEEEEEeccccCCCcCHHHHHHhc--CCCceEEEEeCCCCCCCccC----CHHHHHHHHHHcCCEEEEehhhh-cc-c
Confidence 46666766543 689999999 45689999999999999986 89999999999999999999984 21 1
Q ss_pred CcccccccCCCCcCeeeecccccCCchhhhhheecHHhhhccCCCCCC----------CCCCCcHHHHHHHHHHHHHHhh
Q psy6547 90 GKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHG----------STYGGNPLACKLAMTALDVILE 159 (266)
Q Consensus 90 g~~~~~~~~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~a~~~~l~~~~~ 159 (266)
..+....++.+.-+.+++|+++ .++|++++++++.+.+.+.... ..-+.+.....+..++++.+..
T Consensus 200 -~~~~~~~~~~d~~~~s~~K~~g---~~~G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~ 275 (397)
T TIGR01976 200 -GLIDVQATGADFLTCSAYKFFG---PHMGILWGRPELLMNLPPYKLTFSYDTGPERFELGTPQYELLAGVVAAVDYLAG 275 (397)
T ss_pred -cCCCHHHcCCCEEEEechhhcC---CceEEEEEcHHHHhhCCCccccCccCCCcchhcCCCCCHHHHHHHHHHHHHHHH
Confidence 1223333444433445889984 4689999999888776643211 1113344455566666666543
Q ss_pred c-----------------cHHHHHHHHHHHHHHHhhccccc-CCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHH
Q psy6547 160 E-----------------NMIENAYKMGEIFRSELSSPANK-SKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKD 221 (266)
Q Consensus 160 ~-----------------~~~~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~ 221 (266)
. ...++..++.+++++.|++ ++. ..+.. ..+ ...+|++.+.+.. .++.+++++|.+
T Consensus 276 ~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~-~~~~~~~~~-~~~-~~~~~~~~~~~~~---~~~~~l~~~L~~ 349 (397)
T TIGR01976 276 LGESANGSRRERLVASFQAIDAYENRLAEYLLVGLSD-LPGVTLYGV-ARL-AARVPTVSFTVHG---LPPQRVVRRLAD 349 (397)
T ss_pred hCcccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhc-CCCEEEeCC-CCc-cCCCceEEEEeCC---cCHHHHHHHHHH
Confidence 2 2355566777788888776 432 11111 000 1122377776643 357889999999
Q ss_pred CCceeccC---------------CCCEEEEeccCCCCHHHHHHHHHHH
Q psy6547 222 AGLVTKPI---------------SNNIIRLSPALNITEQELREGLDII 254 (266)
Q Consensus 222 ~gi~~~~~---------------~~~~iR~~~~~~~t~~~i~~~~~~l 254 (266)
+||.++.+ ..+++|+|++..+|++|++++++.|
T Consensus 350 ~gI~v~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l 397 (397)
T TIGR01976 350 QGIDAWAGHFYAVRLLRRLGLNDEGGVVRVGLAHYNTAEEVDRLLEAL 397 (397)
T ss_pred CCeEEEeCccchHHHHHHhCCCCCCCeEEEEeeccCCHHHHHHHHHhC
Confidence 99999754 2468999999999999999998864
No 220
>PRK04635 histidinol-phosphate aminotransferase; Provisional
Probab=99.83 E-value=1.5e-19 Score=156.37 Aligned_cols=220 Identities=19% Similarity=0.180 Sum_probs=150.6
Q ss_pred cCCCCCCceeecCC-----CHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcC
Q psy6547 13 FGPHMPGYNIIPYN-----DVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLG 87 (266)
Q Consensus 13 ~~~~~~~v~~~~~~-----d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~ 87 (266)
..-++.+++.+|.+ |++.++ .+ +++++++++.++|++|.+ ++.+.+++|.+.|+ +++||+||+|..|.
T Consensus 119 ~~~~g~~v~~v~~~~~~~~~~~~l~-~~---~~~~li~i~nP~NPTG~~-~~~~~l~~l~~~~~--~~~vivDeay~~~~ 191 (354)
T PRK04635 119 AETFNVGVKALPLTADYQLPLDYIE-QL---DGAKLVFICNPNNPTGTV-IDRADIEQLIEMTP--DAIVVVDEAYIEFC 191 (354)
T ss_pred HHHcCCEEEEEecCCCCCCCHHHHH-hc---cCCCEEEEeCCCCCCCcc-CCHHHHHHHHHhCC--CcEEEEeCchHhhc
Confidence 34567778887753 466665 23 367899988889999987 78888888887765 49999999998774
Q ss_pred CcCccccc-ccCCCCcCeeeeccccc-CCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHhh---ccH
Q psy6547 88 RTGKLLAI-HYEDVRPDIVILGKALS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILE---ENM 162 (266)
Q Consensus 88 ~~g~~~~~-~~~~~~~d~~~~sK~~~-~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~---~~~ 162 (266)
........ ........+.+|||+++ +| +|+||+++++++.+.+... ...++.+.+.+.++.++++.... ++.
T Consensus 192 ~~~s~~~~~~~~~~~iv~~S~SK~~~l~G-lRlG~~i~~~~~~~~l~~~--~~~~~~~~~~~~~a~~~l~~~~~~~~~~~ 268 (354)
T PRK04635 192 PEYSVADLLASYPNLVVLRTLSKAFALAG-ARCGFTLANEELIEILMRV--IAPYPVPLPVSEIATQALSEAGLARMKFQ 268 (354)
T ss_pred cCcchHHHHhhCCCEEEEechHHHhhhhH-HHHhhhhCCHHHHHHHHhh--cCCCCCCHHHHHHHHHHHhcccHHHHHHH
Confidence 22111111 11112223445999998 89 9999999999988877642 23455666677777776643211 223
Q ss_pred HHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccCC----CCEEEEec
Q psy6547 163 IENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPIS----NNIIRLSP 238 (266)
Q Consensus 163 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~----~~~iR~~~ 238 (266)
.++++++++.+.+.|++ ++. +.. .++.|. |+|+.+++ ..++.+.|.++||.++..+ .+++|++
T Consensus 269 ~~~~~~~r~~l~~~L~~-~~~--~~~-~~~~g~---f~~~~~~~-----~~~~~~~l~~~gv~v~~~~~~~~~~~lRis- 335 (354)
T PRK04635 269 VLDLNAQGARLQAALSM-YGG--AKV-LEGNGN---YVLAKFDD-----VDAVFKALWDAGIVARAYKDPRLANCIRFS- 335 (354)
T ss_pred HHHHHHHHHHHHHHHHh-CCC--ceE-CCCCCc---EEEEECCC-----HHHHHHHHHHCCEEEEECCCCCCCCeEEEE-
Confidence 45566677778888877 431 222 233467 88887753 5678889999999997542 5789999
Q ss_pred cCCCCHHHHHHHHHHHHHH
Q psy6547 239 ALNITEQELREGLDIIINT 257 (266)
Q Consensus 239 ~~~~t~~~i~~~~~~l~~~ 257 (266)
..+++++++++++|++.
T Consensus 336 --~~~~e~~~~l~~al~~~ 352 (354)
T PRK04635 336 --FSNRAETDKLIGLIRNQ 352 (354)
T ss_pred --eCCHHHHHHHHHHHHHh
Confidence 35899999999998753
No 221
>cd06453 SufS_like Cysteine desulfurase (SufS)-like. This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine.
Probab=99.83 E-value=1.5e-18 Score=151.17 Aligned_cols=219 Identities=16% Similarity=0.188 Sum_probs=157.4
Q ss_pred CCCCCceeecCC-----CHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCc
Q psy6547 15 PHMPGYNIIPYN-----DVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRT 89 (266)
Q Consensus 15 ~~~~~v~~~~~~-----d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~ 89 (266)
..+.+++.++.+ |++++++.+. +++++|++..+++++|.+. ++++|.++|+++|+++++|++|+ ++.
T Consensus 111 ~~g~~~~~v~~~~~~~~d~~~l~~~l~--~~~~~v~~~~~~~~tG~~~----~~~~i~~~~~~~~~~li~D~a~~-~~~- 182 (373)
T cd06453 111 RTGAKLKVVPVDDDGQLDLEALEKLLT--ERTKLVAVTHVSNVLGTIN----PVKEIGEIAHEAGVPVLVDGAQS-AGH- 182 (373)
T ss_pred hcCcEEEEeecCCCCCcCHHHHHHHhc--CCceEEEEeCcccccCCcC----CHHHHHHHHHHcCCEEEEEhhhh-cCc-
Confidence 446677778754 7899999994 4688999988888899886 78999999999999999999995 221
Q ss_pred CcccccccCCCCcCeeeec--ccccCCchhhhhheecHHhhhccCCCCCC---------------------CCCCCcHHH
Q psy6547 90 GKLLAIHYEDVRPDIVILG--KALSGGLYPISAVLADDEVMGTLVPGTHG---------------------STYGGNPLA 146 (266)
Q Consensus 90 g~~~~~~~~~~~~d~~~~s--K~~~~g~~~~g~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~ 146 (266)
..+... ...+|++++| |++++ .++|++++++++.+.+.....+ ...+++...
T Consensus 183 -~~~~~~--~~~~d~~~~s~~K~~~~--~g~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~ 257 (373)
T cd06453 183 -MPVDVQ--DLGCDFLAFSGHKMLGP--TGIGVLYGKEELLEEMPPYGGGGEMIEEVSFEETTYADLPHKFEAGTPNIAG 257 (373)
T ss_pred -eeeecc--ccCCCEEEeccccccCC--CCcEEEEEchHHhhcCCCeecCCCccccccccccccCCCccccCCCCCCHHH
Confidence 112222 3456788777 99885 4589999998888776643211 112345555
Q ss_pred HHHHHHHHHHHhhc---cHHHHHHHHHHHHHHHhhccccc-CCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHC
Q psy6547 147 CKLAMTALDVILEE---NMIENAYKMGEIFRSELSSPANK-SKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDA 222 (266)
Q Consensus 147 ~~a~~~~l~~~~~~---~~~~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 222 (266)
+.+..++++.+..+ .+.++.+++.+++++.+++ ++. ..+.. ....+. ++.|.++. .+..++.+.|.++
T Consensus 258 ~~al~~al~~l~~~g~~~~~~~~~~~~~~l~~~l~~-~~~~~~~~~-~~~~~~---~~~~~~~~---~~~~~i~~~l~~~ 329 (373)
T cd06453 258 AIGLGAAIDYLEKIGMEAIAAHEHELTAYALERLSE-IPGVRVYGD-AEDRAG---VVSFNLEG---IHPHDVATILDQY 329 (373)
T ss_pred HHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHhc-CCCeEEeCC-ccccCC---eEEEEECC---cCHHHHHHHHHHC
Confidence 66667777777654 4567777888888888887 532 22211 122344 78888754 4678899999999
Q ss_pred CceeccCC------------CCEEEEeccCCCCHHHHHHHHHHH
Q psy6547 223 GLVTKPIS------------NNIIRLSPALNITEQELREGLDII 254 (266)
Q Consensus 223 gi~~~~~~------------~~~iR~~~~~~~t~~~i~~~~~~l 254 (266)
||.+.++. .+++|++++..+|++|+|++++.|
T Consensus 330 gi~i~~g~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~~~~~l 373 (373)
T cd06453 330 GIAVRAGHHCAQPLMRRLGVPGTVRASFGLYNTEEEIDALVEAL 373 (373)
T ss_pred CEEeccCccchhHHHHHhCCCCeEEEEecCCCCHHHHHHHHhhC
Confidence 99987532 478999999999999999999864
No 222
>PLN02855 Bifunctional selenocysteine lyase/cysteine desulfurase
Probab=99.83 E-value=1.4e-18 Score=153.82 Aligned_cols=229 Identities=12% Similarity=0.085 Sum_probs=162.5
Q ss_pred CCCCceeecCC-----CHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcC
Q psy6547 16 HMPGYNIIPYN-----DVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTG 90 (266)
Q Consensus 16 ~~~~v~~~~~~-----d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g 90 (266)
.+.+++.++.+ |++++++.+ .+++++|+++.++|++|.+. ++++|.++|+++|+++++|++|. ++.
T Consensus 146 ~g~~v~~v~~~~~~~~~~~~l~~~i--~~~t~lv~i~~~~n~tG~~~----~~~~I~~l~~~~g~~vivD~a~~-~g~-- 216 (424)
T PLN02855 146 TGAVLKFVGLTPDEVLDVEQLKELL--SEKTKLVATHHVSNVLGSIL----PVEDIVHWAHAVGAKVLVDACQS-VPH-- 216 (424)
T ss_pred cCCEEEEEecCCCCCcCHHHHHHHh--ccCceEEEEeCccccccccC----CHHHHHHHHHHcCCEEEEEhhhh-cCC--
Confidence 45677777643 789999999 44789999999999999987 78999999999999999999994 321
Q ss_pred cccccccCCCCcCeeeecccccCCchhhhhheecHHhhhccCCCCC---------------------CCCCCCcHHHHHH
Q psy6547 91 KLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTH---------------------GSTYGGNPLACKL 149 (266)
Q Consensus 91 ~~~~~~~~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~a 149 (266)
..+....++.+.-+.+++|.++ + .++|++.+++++.+.+.+... ...-+.+....++
T Consensus 217 ~~~~~~~~~~d~~~~s~~K~~g-p-~G~G~l~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~r~e~GT~~~~~~~~ 294 (424)
T PLN02855 217 MPVDVQTLGADFLVASSHKMCG-P-TGIGFLWGKSDLLESMPPFLGGGEMISDVFLDHSTYAPPPSRFEAGTPAIGEAIG 294 (424)
T ss_pred cCCCchhcCCCEEEeecccccC-C-CccEEEEEchhhhhcCCCEecCCCceeeeecCccccCCChhhccCCChHHHHHHH
Confidence 1223333443333445889554 3 358999999888776653210 1111345556667
Q ss_pred HHHHHHHHhh---ccHHHHHHHHHHHHHHHhhcccc-cCCCcccE---EecCccceeeEEEEeeCccchHHHHHHHHHHC
Q psy6547 150 AMTALDVILE---ENMIENAYKMGEIFRSELSSPAN-KSKASFKL---SSGGLKKSINTLILSVSAILEVYDVCIKMKDA 222 (266)
Q Consensus 150 ~~~~l~~~~~---~~~~~~~~~~~~~l~~~l~~~~~-~~~~~~~~---~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 222 (266)
+.++++.+.. ++..++..++.+++++.|++ +. ...+.... ...+. ++.|.++. .+..++.+.|.++
T Consensus 295 l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~-~~g~~i~~~~~~~~~~r~~---~v~~~~~~---~~~~~v~~~L~~~ 367 (424)
T PLN02855 295 LGAAIDYLSEIGMDRIHEYEVELGTYLYEKLSS-VPGVRIYGPKPSEGVGRAA---LCAFNVEG---IHPTDLSTFLDQQ 367 (424)
T ss_pred HHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhc-CCCEEEeCCCcccccCccc---EEEEEECC---cCHHHHHHHhccc
Confidence 7777876654 45778888899999998887 43 22221100 01233 78888754 3577899999877
Q ss_pred -CceeccCC------------CCEEEEeccCCCCHHHHHHHHHHHHHHHHHHh
Q psy6547 223 -GLVTKPIS------------NNIIRLSPALNITEQELREGLDIIINTINTMA 262 (266)
Q Consensus 223 -gi~~~~~~------------~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~~ 262 (266)
||.++.+. .+++|+|++..+|++|++++++.|+++++.+.
T Consensus 368 ~gI~v~~g~~c~~~~~~~~g~~~~iRiS~~~ynt~~di~~l~~~l~~~~~~~~ 420 (424)
T PLN02855 368 HGVAIRSGHHCAQPLHRYLGVNASARASLYFYNTKEEVDAFIHALKDTIAFFS 420 (424)
T ss_pred CCEEEechhhhhHHHHHHhCCCCeEEEEeccCCCHHHHHHHHHHHHHHHHHHH
Confidence 99988542 36899999999999999999999999987754
No 223
>PRK08354 putative aminotransferase; Provisional
Probab=99.83 E-value=4.4e-19 Score=150.85 Aligned_cols=215 Identities=14% Similarity=0.103 Sum_probs=137.2
Q ss_pred cccccCCCCCCceeecCCCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCC
Q psy6547 9 SYNEFGPHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGR 88 (266)
Q Consensus 9 ~~~~~~~~~~~v~~~~~~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~ 88 (266)
....+.-.+.+++.++ .|++.+++.++ +...+++++| +|++|.+ ++.+.+++|.++|+++|+++|+||+|.+|..
T Consensus 90 ~~~~~~~~g~~~~~~~-~d~~~l~~~~~--~~~~vi~~~P-~NPTG~~-~~~~~l~~l~~~a~~~~~~li~De~y~~f~~ 164 (311)
T PRK08354 90 YERVARFFAARIIKGP-NDPEKLEELVE--RNSVVFFCNP-NNPDGKF-YNFKELKPLLDAVEDRNALLILDEAFIDFVK 164 (311)
T ss_pred HHHHHHHcCCEEeecC-CCHHHHHHhhc--CCCEEEEecC-CCCCCCc-cCHHHHHHHHHHhhhcCcEEEEeCcchhccc
Confidence 3344455666776664 47899998884 2223444555 6888876 9999999999999999999999999988743
Q ss_pred cCcccccccCCCCcCeeeeccccc-CCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHhhccHHHHHH
Q psy6547 89 TGKLLAIHYEDVRPDIVILGKALS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAY 167 (266)
Q Consensus 89 ~g~~~~~~~~~~~~d~~~~sK~~~-~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~ 167 (266)
.+... . ......+.+|||.++ +| +|+||+++..+ .++... ..+..+...++++...++ +. .++++
T Consensus 165 ~~~~~--~-~~~vi~~~S~SK~~~l~G-lRiG~~v~~~~---~l~~~~--~~~~~~~~~~~~~~~~~~----~~-~~~~~ 230 (311)
T PRK08354 165 KPESP--E-GENIIKLRTFTKSYGLPG-IRVGYVKGFEE---AFRSVR--MPWSIGSTGYAFLEFLIE----DD-FEHLR 230 (311)
T ss_pred ccccc--C-CCcEEEEeccHhhcCCcc-ceeeeeeehHH---HHHHcC--CCccCCHHHHHHHHHHHH----hH-HHHHH
Confidence 33211 1 233344556999999 99 99999998333 333222 234445555555544443 11 23444
Q ss_pred HHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccCC----CCEEEEeccCCCC
Q psy6547 168 KMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPIS----NNIIRLSPALNIT 243 (266)
Q Consensus 168 ~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~----~~~iR~~~~~~~t 243 (266)
+..+.+++..+. +..... .++.|. |+++.+. ++.++++.|+++||.+.++. ++++|++. .+
T Consensus 231 ~~~~~~~~~~~~-l~~~l~---~~~~~~---~~~~~~~-----~~~~~~~~l~~~gv~v~~g~~f~~~~~iRi~~---~~ 295 (311)
T PRK08354 231 KTMPLIWREKER-FEKALY---VKSDAN---FFIKDVG-----DAEKFVEFLKRNGILVRDCTSFGLPGYIRFSV---RD 295 (311)
T ss_pred HHHHHHHHHHHH-HHHhcC---CCCCCc---EEEEECC-----CHHHHHHHHHHCCeEEEecccCCCCCeEEEEe---CC
Confidence 444444444443 211111 224455 7776543 35789999999999999863 48999993 35
Q ss_pred HHHHHHHHHHHHHH
Q psy6547 244 EQELREGLDIIINT 257 (266)
Q Consensus 244 ~~~i~~~~~~l~~~ 257 (266)
.++.+++++.|++.
T Consensus 296 ~~~~~~l~~al~~~ 309 (311)
T PRK08354 296 REENEKLIRALREW 309 (311)
T ss_pred HHHHHHHHHHHHHh
Confidence 66677777777664
No 224
>PRK09331 Sep-tRNA:Cys-tRNA synthetase; Provisional
Probab=99.82 E-value=1.3e-18 Score=152.16 Aligned_cols=233 Identities=12% Similarity=0.086 Sum_probs=155.9
Q ss_pred CCCCCceeecC-------CCHHHHHHHHhcC-----CCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEecc
Q psy6547 15 PHMPGYNIIPY-------NDVDALEAKLKSN-----PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEV 82 (266)
Q Consensus 15 ~~~~~v~~~~~-------~d~~~l~~~l~~~-----~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~ 82 (266)
-.+.+++.++. .|++++++.++++ +++++|+++.+++++|.+. ++++|.++|++||+++++|++
T Consensus 121 ~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~lV~l~~~~~~tG~~~----~l~~I~~la~~~g~~livD~a 196 (387)
T PRK09331 121 RAGLNVREVPKTGYPEYKITPEAYAEKIEEVKEETGKPPALALLTHVDGNYGNLA----DAKKVAKVAHEYGIPFLLNGA 196 (387)
T ss_pred HcCCEEEEEeCccCcCCCcCHHHHHHHHHHhhhccCCCCEEEEEECCCCCCcccc----cHHHHHHHHHHcCCEEEEECC
Confidence 34667777776 4799999999643 4689999998888888876 899999999999999999999
Q ss_pred ccCcCCcCcccccccCCCCcCeeeecccccCCchhhhhheecHHhhhccCCCCCCC------CC--CCcHHHHHHHHHHH
Q psy6547 83 QTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGS------TY--GGNPLACKLAMTAL 154 (266)
Q Consensus 83 ~~~~~~~g~~~~~~~~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~~~~~~------~~--~~~~~~~~a~~~~l 154 (266)
|+ ++.. ++....++.+..+.+++|+++++ .++|++++++++++.+....... .+ +..+....++.+++
T Consensus 197 ~~-~g~~--~~~~~~~g~D~~~~s~~K~l~~~-~~~G~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aal 272 (387)
T PRK09331 197 YT-VGRM--PVDGKKLGADFIVGSGHKSMAAS-APSGVLATTEEYADKVFRTSRKFGVKEVELLGCTLRGAPLVTLMASF 272 (387)
T ss_pred cc-cCCc--CCCHHHcCCCEEEeeCcccccCC-CCEEEEEECHHHHhhcccccCCCcccceeeeceecCchHHHHHHHHH
Confidence 94 2211 22333456666666799999977 78999999998887765421100 01 11222334444555
Q ss_pred HHHhh-ccHHHHHHHHHHHHHHHhhccc-ccCCCcccEEecCccceeeEEEEeeC------ccchHHHHHHHHHHCCcee
Q psy6547 155 DVILE-ENMIENAYKMGEIFRSELSSPA-NKSKASFKLSSGGLKKSINTLILSVS------AILEVYDVCIKMKDAGLVT 226 (266)
Q Consensus 155 ~~~~~-~~~~~~~~~~~~~l~~~l~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~------~~~~~~~~~~~l~~~gi~~ 226 (266)
+.+.. .+.+++..++.+++++.|.+ + +...+.. ..... |++.++.+.. ...++.++.++|.++||..
T Consensus 273 ~~~~~~~~~~~~~~~~~~~l~~~L~~-l~g~~~~~~-~~~~~---~i~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gI~~ 347 (387)
T PRK09331 273 PHVVERVKRWDEEVKKARWFVDELEK-IEGFKQLGE-KPRNH---DLMKFETPSFDEIAKKHKRRGFFLYEELKKRGIHG 347 (387)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc-CCCEEEecc-CcCcC---CeEEEeCCchhHHhhhccccchhHHHHHHHcCceE
Confidence 54432 23455556778888899888 5 3222221 11222 3676665421 1223467999999999996
Q ss_pred ccCCCC-EEEEeccCCCCHHHHHHHHHHHHHHHHHH
Q psy6547 227 KPISNN-IIRLSPALNITEQELREGLDIIINTINTM 261 (266)
Q Consensus 227 ~~~~~~-~iR~~~~~~~t~~~i~~~~~~l~~~~~~~ 261 (266)
.+.+.+ .+|+. +..+++++++++++.|+++++++
T Consensus 348 ~~~~~~~i~ri~-~~g~t~~di~~l~~aL~~i~~~~ 382 (387)
T PRK09331 348 IKPGATKEFKLS-TYGLTWEQVEYVADAFKEIAEKY 382 (387)
T ss_pred EccCCceEEEEE-eccCCHHHHHHHHHHHHHHHHhc
Confidence 544444 45555 44579999999999999988764
No 225
>PLN02672 methionine S-methyltransferase
Probab=99.82 E-value=4.7e-19 Score=167.70 Aligned_cols=243 Identities=14% Similarity=0.161 Sum_probs=155.7
Q ss_pred CcCcccccCCCCCCceeecCC-------CHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEE
Q psy6547 6 DPTSYNEFGPHMPGYNIIPYN-------DVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFI 78 (266)
Q Consensus 6 ~~~~~~~~~~~~~~v~~~~~~-------d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li 78 (266)
++.+...+...+.+++.++.+ |+++|+++++......+++++|.+||+|.+ ++.+.+++|.++|++||++||
T Consensus 788 Y~~Y~~~a~~~Ga~vv~Vpl~~e~gf~lD~d~Le~al~~~~~~~I~L~nPnhNPTG~v-~S~eeLe~Llela~k~di~VI 866 (1082)
T PLN02672 788 NGTYVSAAKFLKANFRRIPTKSSDGFKLTAKTLASTLETVKKPWVYISGPTINPTGLL-YSNSEIEEILSVCAKYGARVI 866 (1082)
T ss_pred hHHHHHHHHHcCCEEEEEecccccCCCCCHHHHHHHhccCCCCEEEEECcCCCCcCcc-CCHHHHHHHHHHHHHcCCEEE
Confidence 344444456677888888753 578899998432233566677777889977 999999999999999999999
Q ss_pred EeccccCcCCcCccc---ccc----cC-C-----CCcCeeeeccccc-CCchhhhhheecH-HhhhccCCCCCCCC-CCC
Q psy6547 79 ADEVQTGLGRTGKLL---AIH----YE-D-----VRPDIVILGKALS-GGLYPISAVLADD-EVMGTLVPGTHGST-YGG 142 (266)
Q Consensus 79 ~De~~~~~~~~g~~~---~~~----~~-~-----~~~d~~~~sK~~~-~g~~~~g~~~~~~-~~~~~~~~~~~~~~-~~~ 142 (266)
+||+|.++...+... ... .. . ....+.+|||.++ +| +|+||++++. .+.+.+........ +..
T Consensus 867 sDEaYsdL~Fd~~~~s~~sl~s~l~~~~~~sks~nVIvL~SfSKkf~lpG-LRIGylIap~~eLi~~l~~~~~~s~~~~~ 945 (1082)
T PLN02672 867 IDTSFSGLEYDTSGWGGWDLKSILSRLKSSNPSFAVALLGGLSTELLSGG-HEFGFLALNDSVLIDAFHSAPGLSRPHST 945 (1082)
T ss_pred EeCCCCccccCCCCCcccchhhHHHHhccccCCceEEEEeCcHHhhccHH-HHheeEEeCCHHHHHHHHHhhhhcCCCcH
Confidence 999998764433211 010 11 1 1122334999888 88 9999999864 47777754322121 122
Q ss_pred cHHHHHHHHHHHHH----Hhh--ccHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEee----------
Q psy6547 143 NPLACKLAMTALDV----ILE--ENMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSV---------- 206 (266)
Q Consensus 143 ~~~~~~a~~~~l~~----~~~--~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---------- 206 (266)
+..++.++.+++.. +.. .+.++.++++++++.+.|++ .+ +....+..|. ++|+.+..
T Consensus 946 ~q~Aaaaalall~~~~~~~~~~l~e~r~~Lk~rRd~L~e~L~~-~G---i~v~~PeGGF---fLwl~l~~~l~~~~~~~~ 1018 (1082)
T PLN02672 946 LKYTIKKLLGLKNQKSSDLLDGVAEQKKILKSRAERLKETLEA-CG---WDVLEPQGGI---SMVAKPSAYLGKTVKLKS 1018 (1082)
T ss_pred HHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHHH-CC---CeEecCCcEE---EEEEEccccccccccccc
Confidence 23333333332210 111 23445567777777777776 43 2221223455 66665421
Q ss_pred C-----ccchHHHHHHHHHHC-CceeccC----CCCEEEEeccCCCCHHHHHHHHHHHHHHHH
Q psy6547 207 S-----AILEVYDVCIKMKDA-GLVTKPI----SNNIIRLSPALNITEQELREGLDIIINTIN 259 (266)
Q Consensus 207 ~-----~~~~~~~~~~~l~~~-gi~~~~~----~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~ 259 (266)
. .+.+..+++++|+++ ||.+.|+ ..+++|++ +..+++++++++++|.++.+
T Consensus 1019 ~~~~~~~~lds~efae~LLee~GVaV~PGs~FG~~g~~RIs--fa~~~e~LeeALerL~kf~~ 1079 (1082)
T PLN02672 1019 IDGDTGIKLDSSNIREAILKSTGLCINSSSWTGIPGYCRFS--FALEDSEFDRALKAIARFKE 1079 (1082)
T ss_pred cccccccCCCHHHHHHHHHHcCCEEEecCcccCCCCeEEEE--ecCCHHHHHHHHHHHHHHHH
Confidence 0 023578899999865 9999985 34799999 45688999999999998764
No 226
>PRK13520 L-tyrosine decarboxylase; Provisional
Probab=99.82 E-value=1.1e-18 Score=151.92 Aligned_cols=224 Identities=13% Similarity=0.107 Sum_probs=151.0
Q ss_pred CCCCCceeecCC-----CHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcC--
Q psy6547 15 PHMPGYNIIPYN-----DVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLG-- 87 (266)
Q Consensus 15 ~~~~~v~~~~~~-----d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~-- 87 (266)
-++.+++.++.+ |+++|++.++ ++++++++....+++|.+. ++++|.++|+++|+++++|++|+++.
T Consensus 123 ~~g~~~~~v~~~~~~~~d~~~l~~~i~--~~~~~vi~~~~~~~tG~~~----~l~~I~~l~~~~g~~livD~a~~~~~~~ 196 (371)
T PRK13520 123 MLGVELRRAPLDDDYRVDVKAVEDLID--DNTIGIVGIAGTTELGQVD----PIPELSKIALENGIFLHVDAAFGGFVIP 196 (371)
T ss_pred HcCceEEEecCCCCCcCCHHHHHHHHh--hCCEEEEEEcCCcCCcccC----CHHHHHHHHHHcCCCEEEEecchhHHHH
Confidence 345677777743 7999999994 3455566555567788886 79999999999999999999997542
Q ss_pred --CcCcccccccCCCCcCeee--ecccccCCchhhhhhee-cHHhhhccCCCC---CC-----CCCCCcHHHHHHHHHHH
Q psy6547 88 --RTGKLLAIHYEDVRPDIVI--LGKALSGGLYPISAVLA-DDEVMGTLVPGT---HG-----STYGGNPLACKLAMTAL 154 (266)
Q Consensus 88 --~~g~~~~~~~~~~~~d~~~--~sK~~~~g~~~~g~~~~-~~~~~~~~~~~~---~~-----~~~~~~~~~~~a~~~~l 154 (266)
..+..+..... ..|.++ ..|+..+| .|.|+++. ++++.+.+.... .. ...+.+...+.++.+++
T Consensus 197 ~~~~~~~~~~~~~--~vd~~~~s~~K~~~a~-~~~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~gt~~~~~~~~~~~al 273 (371)
T PRK13520 197 FLDDPPNFDFSLP--GVDSITIDPHKMGLAP-IPAGGILFRDESYLDALAVDTPYLTSKKQATLTGTRSGAGVAATYAVM 273 (371)
T ss_pred hhcCCCCccccCC--CCceEEECCccccCcc-CCceEEEEcCHHHHHhhcccCccccCCCCcceEeeccChHHHHHHHHH
Confidence 11111222222 344444 45766566 78887765 555655543110 00 01122344567777788
Q ss_pred HHHhhc---cHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccCC-
Q psy6547 155 DVILEE---NMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPIS- 230 (266)
Q Consensus 155 ~~~~~~---~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~- 230 (266)
+.+..+ ++.++..++++++++.|++ ++...+ ...... ++.+.++ +++++.++|.++||.+++..
T Consensus 274 ~~l~~~g~~~~~~~~~~~~~~l~~~L~~-~g~~~~---~~~~~~---~v~~~~~-----~~~~v~~~L~~~gi~v~~~~~ 341 (371)
T PRK13520 274 KYLGREGYRKVVERCMENTRWLAEELKE-RGFEPV---IEPVLN---IVAFDDP-----NPDEVREKLRERGWRVSVTRC 341 (371)
T ss_pred hhhcHhHHHHHHHHHHHHHHHHHHHHHh-CCCEEe---cCCCce---EEEEecC-----CHHHHHHHHHHCCceeccCCC
Confidence 776554 4778888899999999887 432111 111223 6666654 36789999999999998754
Q ss_pred CCEEEEeccCCCCHHHHHHHHHHHHHHHH
Q psy6547 231 NNIIRLSPALNITEQELREGLDIIINTIN 259 (266)
Q Consensus 231 ~~~iR~~~~~~~t~~~i~~~~~~l~~~~~ 259 (266)
.+++|++++..+|++|++++++.|+++++
T Consensus 342 ~~~iRis~~~~~t~edi~~~~~~l~~~~~ 370 (371)
T PRK13520 342 PEALRIVCMPHVTREHIENFLEDLKEVKK 370 (371)
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHhh
Confidence 56899998888999999999999998764
No 227
>TIGR01814 kynureninase kynureninase. This model describes kynureninase, a pyridoxal-phosphate enzyme. Kynurinine is a Trp breakdown product and a precursor for NAD. In Chlamydia psittaci, an obligate intracellular pathogen, kynureninase makes anthranilate, a Trp precursor, from kynurenine. This counters the tryptophan hydrolysis that occurs in the host cell in response to the pathogen.
Probab=99.81 E-value=5.9e-18 Score=149.10 Aligned_cols=216 Identities=13% Similarity=0.169 Sum_probs=152.8
Q ss_pred CHHHHHHHHhc-CCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCcccccccCCCCcCee
Q psy6547 27 DVDALEAKLKS-NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIV 105 (266)
Q Consensus 27 d~~~l~~~l~~-~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~~~~~~~~~~d~~ 105 (266)
|++++++.+++ .+++++|+++++++.+|.+. ++++|.++|+++|+++++|++|+ +|.. ++....++++..+.
T Consensus 157 ~~~~l~~~~~~~~~~t~lv~~~~v~~~tG~~~----~~~~i~~~~~~~g~~~~vD~aq~-~G~~--~id~~~~gvD~~~~ 229 (406)
T TIGR01814 157 RLEDILDTIEKNGDDIAVILLSGVQYYTGQLF----DMAAITRAAHAKGALVGFDLAHA-VGNV--PLDLHDWGVDFACW 229 (406)
T ss_pred CHHHHHHHHHhcCCCeEEEEEeccccccceec----CHHHHHHHHHHcCCEEEEEcccc-cCCc--ccccccCCCCEEEE
Confidence 68899988854 35799999999999999997 89999999999999999999995 3221 33445556666666
Q ss_pred eecccccCCchhhhhheecHHhhhccCCCCCC-----------------------CCCCCcHHHHHHHHHHHHHHhh---
Q psy6547 106 ILGKALSGGLYPISAVLADDEVMGTLVPGTHG-----------------------STYGGNPLACKLAMTALDVILE--- 159 (266)
Q Consensus 106 ~~sK~~~~g~~~~g~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~a~~~~l~~~~~--- 159 (266)
+..|++.+| .. |.+...++....+.+...+ ...+++..+..++.++++.+..
T Consensus 230 s~hK~l~g~-pG-~~l~v~~~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~GT~~~~~~~~l~~al~~~~~~g~ 307 (406)
T TIGR01814 230 CTYKYLNAG-PG-AGAFVHEKHAHTERPRLAGWWGHARPTRFKMDNTLGLIPCGFRISNPPILSVAALRGSLDIFDQAGM 307 (406)
T ss_pred cCccccCCC-CC-eEEEEehhhhhhcCCCCCcccCCCCccccccccccCCCccceeeCCccHHHHHHHHHHHHHHHhcCH
Confidence 688999876 44 5444433332222221000 0123566677778888888755
Q ss_pred ccHHHHHHHHHHHHHHHhhcccc-cCCCcc----cEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccCCCCEE
Q psy6547 160 ENMIENAYKMGEIFRSELSSPAN-KSKASF----KLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPISNNII 234 (266)
Q Consensus 160 ~~~~~~~~~~~~~l~~~l~~~~~-~~~~~~----~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~i 234 (266)
+...++..++.+++++.|++..+ .+.+.. .....+. ++.|.++. +++++.+.|.++||.+.....+.+
T Consensus 308 ~~i~~~~~~l~~~l~~~l~~~~~~~~~~~i~~~~~~~~r~~---~v~~~~~~----~~~~~~~~L~~~gi~v~~~~~~~i 380 (406)
T TIGR01814 308 EALRKKSLLLTDYLEELIKARCGGPPVLTIITPRDHAQRGC---QLSLTHPV----PGKAVFQALIKRGVIGDKREPSVI 380 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCceEEeCCCChhhcCC---eEEEEecC----CHHHHHHHHHHCCEEEeccCCCeE
Confidence 45778888899999988877211 011111 0111234 67777762 467899999999999887666899
Q ss_pred EEec-cCCCCHHHHHHHHHHHHHHH
Q psy6547 235 RLSP-ALNITEQELREGLDIIINTI 258 (266)
Q Consensus 235 R~~~-~~~~t~~~i~~~~~~l~~~~ 258 (266)
|+|+ +..+|++|+++++++|++.+
T Consensus 381 RiS~~~~~nt~~did~l~~~l~~~~ 405 (406)
T TIGR01814 381 RVAPVPLYNTFVDVYDAVNVLEEIL 405 (406)
T ss_pred EEechhccCCHHHHHHHHHHHHHHh
Confidence 9999 68999999999999998865
No 228
>TIGR03402 FeS_nifS cysteine desulfurase NifS. Members of this protein family are NifS, one of several related families of cysteine desulfurase involved in iron-sulfur (FeS) cluster biosynthesis. NifS is part of the NIF system, usually associated with other nif genes involved in nitrogenase expression and nitrogen fixation. The protein family is given a fairly broad interpretation here. It includes a clade nearly always found in extended nitrogen fixation genomic regions, plus a second clade more closely related to the first than to IscS and also part of NifS-like/NifU-like systems. This model does not extend to a more distantly clade found in the epsilon proteobacteria such as Helicobacter pylori, also named NifS in the literature, built instead in TIGR03403.
Probab=99.81 E-value=7.2e-18 Score=147.29 Aligned_cols=225 Identities=15% Similarity=0.150 Sum_probs=152.9
Q ss_pred CCCCceeecC-----CCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcC
Q psy6547 16 HMPGYNIIPY-----NDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTG 90 (266)
Q Consensus 16 ~~~~v~~~~~-----~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g 90 (266)
.+.+++.++. .|++++++.+ .+++++++++.++|++|.+. ++++|.++|+++|+++++|++|+ ++.
T Consensus 109 ~G~~v~~v~~~~~g~~~~~~l~~~i--~~~~~lv~i~~~~n~tG~~~----~~~~I~~l~~~~g~~vivD~~~~-~g~-- 179 (379)
T TIGR03402 109 QGYKVTYLPVDEEGRLDLEELRAAI--TDDTALVSVMWANNETGTIF----PIEEIGEIAKERGALFHTDAVQA-VGK-- 179 (379)
T ss_pred cCCEEEEEccCCCCcCCHHHHHHhc--CCCcEEEEEEcccCCeeecc----cHHHHHHHHHHcCCEEEEECccc-ccc--
Confidence 4667777764 3789999999 44688898888899999886 78899999999999999999995 321
Q ss_pred cccccccCCCCcCeeeec--ccccCCchhhhhheecHHhhhccCCCCC-------CCCCCCcHHHHHHHHHHHHHHhh--
Q psy6547 91 KLLAIHYEDVRPDIVILG--KALSGGLYPISAVLADDEVMGTLVPGTH-------GSTYGGNPLACKLAMTALDVILE-- 159 (266)
Q Consensus 91 ~~~~~~~~~~~~d~~~~s--K~~~~g~~~~g~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~a~~~~l~~~~~-- 159 (266)
. ..+.....+|++++| |.++ + ..+|++..+++.. +.+... ....+.+..+..+..++++.+..
T Consensus 180 ~--~~~~~~~~~D~~~~s~~K~~g-p-~G~g~l~v~~~~~--~~p~~~g~~~~~~~~~gt~~~~~~~~l~~al~~~~~~~ 253 (379)
T TIGR03402 180 I--PIDLKEMNIDMLSLSGHKLHG-P-KGVGALYIRKGTR--FRPLLRGGHQERGRRAGTENVPGIVGLGKAAELATEHL 253 (379)
T ss_pred c--ccCcccCCCCEEEEcHHHcCC-C-CceEEEEECCCCC--CCCcccCCccCCCcCCCCccHHHHHHHHHHHHHHHHhH
Confidence 1 222333567888877 9444 3 4578877765431 222111 12335566667777777776644
Q ss_pred ccHHHHHHHHHHHHHHHhhccccc-CCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccCC--------
Q psy6547 160 ENMIENAYKMGEIFRSELSSPANK-SKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPIS-------- 230 (266)
Q Consensus 160 ~~~~~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~-------- 230 (266)
++..++.+++.+++++.|.+.+.. ..........+. ++.+.+.. .++.++...|.++||.++.+.
T Consensus 254 ~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~---~~~~~~~~---~~~~~~~~~l~~~gI~v~~g~~c~~~~~~ 327 (379)
T TIGR03402 254 EEENTRVRALRDRLEAGLLARIPDARLNGDPTKRLPN---TVNISFEY---IEGEAILLLLDMEGICASSGSACTSGSLE 327 (379)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCCEEEeCCCccCCCC---EEEEEecC---CCHHHHHHhhccCCEEEEchhhcCCCCCC
Confidence 345577777888888877631221 111110001112 45444433 357789999999999998641
Q ss_pred ---------------CCEEEEeccCCCCHHHHHHHHHHHHHHHHHH
Q psy6547 231 ---------------NNIIRLSPALNITEQELREGLDIIINTINTM 261 (266)
Q Consensus 231 ---------------~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~ 261 (266)
.+.+|+|++..+|++|++++++.|+++++++
T Consensus 328 ~~~~~~~lg~~~~~~~~~vR~S~~~~~t~~di~~~~~~l~~~~~~~ 373 (379)
T TIGR03402 328 PSHVLRAMGVPHTAAHGSIRFSLSRYNTEEDIDYVLEVLPPIIARL 373 (379)
T ss_pred cCHHHHHcCCChhhcCceEEEEcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 3689999999999999999999999988764
No 229
>PRK02948 cysteine desulfurase; Provisional
Probab=99.80 E-value=3.6e-18 Score=149.25 Aligned_cols=229 Identities=17% Similarity=0.178 Sum_probs=158.8
Q ss_pred CCCCceeecC-----CCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcC
Q psy6547 16 HMPGYNIIPY-----NDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTG 90 (266)
Q Consensus 16 ~~~~v~~~~~-----~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g 90 (266)
.+.+++.++. .|+++|++.+ .+++++++++.++|++|.+. ++++|.++|+++|+++++|+++ .++..
T Consensus 111 ~g~~v~~v~~~~~~~~d~~~l~~~l--~~~~~lv~~~~~~n~tG~~~----~~~~I~~l~~~~~~~vivD~~~-~~g~~- 182 (381)
T PRK02948 111 QGYTVTEIPVDKSGLIRLVDLERAI--TPDTVLASIQHANSEIGTIQ----PIAEIGALLKKYNVLFHSDCVQ-TFGKL- 182 (381)
T ss_pred CCCEEEEEeeCCCCCCCHHHHHHhc--CCCCEEEEEECCcCCcEeeh----hHHHHHHHHHHcCCEEEEEChh-hcccc-
Confidence 3556666653 3789999998 34678999999999999987 7999999999999999999877 35332
Q ss_pred cccccccCCCCcCeeeecccccCCchhhhhheecHHh-hhccCCC----CCCCCCCCcHHHHHHHHHHHHHHhh--ccHH
Q psy6547 91 KLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEV-MGTLVPG----THGSTYGGNPLACKLAMTALDVILE--ENMI 163 (266)
Q Consensus 91 ~~~~~~~~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~-~~~~~~~----~~~~~~~~~~~~~~a~~~~l~~~~~--~~~~ 163 (266)
.+....++.+.-+.+++|.+++ ..+|+++.++++ +...... .....++.+.+++.++.++++.... ++..
T Consensus 183 -~~~~~~~~~d~~~~s~~K~~gp--~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~~~~~~ 259 (381)
T PRK02948 183 -PIDVFEMGIDSLSVSAHKIYGP--KGVGAVYINPQVRWKPVFPGTTHEKGFRPGTVNVPGIAAFLTAAENILKNMQEES 259 (381)
T ss_pred -ccCcccCCCCEEEecHHhcCCC--CcEEEEEEcCCCCCCCcccCCCCCCCcCCCCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 2233445555445558898872 237888777654 1111100 1123456788888888888876533 4567
Q ss_pred HHHHHHHHHHHHHhhcccccCCCcccEEecCcc--ceeeEEEEeeCccchHHHHHHHHHHCCceeccCC-----------
Q psy6547 164 ENAYKMGEIFRSELSSPANKSKASFKLSSGGLK--KSINTLILSVSAILEVYDVCIKMKDAGLVTKPIS----------- 230 (266)
Q Consensus 164 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~--~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~----------- 230 (266)
++++++++++++.|++ ++.... ..+...+ ..++.+.++. .++.++..+|.++||.++.+.
T Consensus 260 ~~~~~~~~~l~~~L~~-~~~~v~---~~~~~~~~~~~i~~~~~~~---~~~~~~~~~l~~~gI~v~~g~~c~~~~~~p~~ 332 (381)
T PRK02948 260 LRFKELRSYFLEQIQT-LPLPIE---VEGHSTSCLPHIIGVTIKG---IEGQYTMLECNRRGIAISTGSACQVGKQEPSK 332 (381)
T ss_pred HHHHHHHHHHHHHHhc-CCCCEE---EeCCCccCcCCEEEEEeCC---CCHHHHHHhcccCCEEEEchHhcCCCCCCCCH
Confidence 8888999999999988 543211 1111110 0144555442 356788888989999998532
Q ss_pred ------------CCEEEEeccCCCCHHHHHHHHHHHHHHHHHHh
Q psy6547 231 ------------NNIIRLSPALNITEQELREGLDIIINTINTMA 262 (266)
Q Consensus 231 ------------~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~~ 262 (266)
.+++|++++..+|++|++++++.|++.++++-
T Consensus 333 ~~~~~~~~~~~~~~~lRis~~~~~t~~di~~l~~~l~~~~~~~~ 376 (381)
T PRK02948 333 TMLAIGKTYEEAKQFVRFSFGQQTTKDQIDTTIHALETIGNQFY 376 (381)
T ss_pred HHHHcCCChHHhCceEEEEcCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 36899999999999999999999999887653
No 230
>cd06502 TA_like Low-specificity threonine aldolase (TA). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). TA catalyzes the conversion of L-threonine or L-allo-threonine to glycine and acetaldehyde in a secondary glycine biosynthetic pathway.
Probab=99.80 E-value=8.9e-19 Score=150.59 Aligned_cols=227 Identities=15% Similarity=0.101 Sum_probs=150.3
Q ss_pred CCCCceeecC----CCHHHHHHHHhcC-----CCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCc
Q psy6547 16 HMPGYNIIPY----NDVDALEAKLKSN-----PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGL 86 (266)
Q Consensus 16 ~~~~v~~~~~----~d~~~l~~~l~~~-----~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~ 86 (266)
.+.+++.++. .|+++|++++.+. ++++++++++++|+ |.+ ++.+++++|+++|+++|+++|+||+|..+
T Consensus 94 ~g~~~~~v~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~l~~p~n~-g~~-~~~~~l~~i~~~~~~~~~~livDea~~~~ 171 (338)
T cd06502 94 SGVKLLPVPGENGKLTPEDLEAAIRPRDDIHFPPPSLVSLENTTEG-GTV-YPLDELKAISALAKENGLPLHLDGARLAN 171 (338)
T ss_pred cCceEEeecCCCCcCCHHHHHHHhhccCCCcCCcceEEEEEeecCC-ccc-cCHHHHHHHHHHHHHcCCeEeechHHHHH
Confidence 4666777765 4799999999542 26788888877765 554 58999999999999999999999998422
Q ss_pred --CCcCcccccccCCCCcCeeeecccccCCchhhhh-heecHHhhhccCCCC--CCCCCCCcHHHHHHHHHHHHHHhhcc
Q psy6547 87 --GRTGKLLAIHYEDVRPDIVILGKALSGGLYPISA-VLADDEVMGTLVPGT--HGSTYGGNPLACKLAMTALDVILEEN 161 (266)
Q Consensus 87 --~~~g~~~~~~~~~~~~d~~~~sK~~~~g~~~~g~-~~~~~~~~~~~~~~~--~~~~~~~~~~~~~a~~~~l~~~~~~~ 161 (266)
...|........+.+.-+.++||+++.. .|+ +++++++.+.+.... ...+++.+++.++++..+|+.-...+
T Consensus 172 ~~~~~~~~~~~~~~~~d~~~~s~sK~~~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~L~~~~~~~ 248 (338)
T cd06502 172 AAAALGVALKTYKSGVDSVSFCLSKGGGAP---VGAVVVGNRDFIARARRRRKQAGGGMRQSGFLAAAGLAALENDLWLR 248 (338)
T ss_pred HHHhcCCCHHHHHhcCCEEEEeccccCCCc---cceEEECCHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHhcCchHHH
Confidence 1122211111122333344599999732 344 556888877765432 22445556677777777665321234
Q ss_pred HHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHH---HCCceeccCCCCEEEEec
Q psy6547 162 MIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMK---DAGLVTKPISNNIIRLSP 238 (266)
Q Consensus 162 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~---~~gi~~~~~~~~~iR~~~ 238 (266)
..+++.++++++.+.|++ ++... ....+. ++.+..+.. .....++.+.+. ++|+.+.+.+.+++|+++
T Consensus 249 ~~~~~~~~~~~l~~~L~~-~~~~~----~~~~~~---~~~v~~~~~-~~~~~~l~~~l~~~~~~gi~~~~~~~~~lRi~~ 319 (338)
T cd06502 249 RLRHDHEMARRLAEALEE-LGGLE----SEVQTN---IVLLDPVEA-NAVFVELSKEAIERRGEGVLFYAWGEGGVRFVT 319 (338)
T ss_pred HHHHHHHHHHHHHHHHHh-cCCCc----ccccCC---eEEEecCCc-cHHHHHHHHHHHHhhhCCEEEEecCCCeEEEEe
Confidence 567778888889998887 54311 122344 676666431 222344555554 689999887669999999
Q ss_pred cCCCCHHHHHHHHHHHHH
Q psy6547 239 ALNITEQELREGLDIIIN 256 (266)
Q Consensus 239 ~~~~t~~~i~~~~~~l~~ 256 (266)
++.+++++++++++++++
T Consensus 320 ~~~~~~~~i~~~~~~l~~ 337 (338)
T cd06502 320 HWDTTEEDVDELLSALKA 337 (338)
T ss_pred ecCCCHHHHHHHHHHHhc
Confidence 999999999999999865
No 231
>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]
Probab=99.80 E-value=2.8e-17 Score=139.93 Aligned_cols=234 Identities=17% Similarity=0.185 Sum_probs=183.0
Q ss_pred CCCCCceeecCC-----CHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCc
Q psy6547 15 PHMPGYNIIPYN-----DVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRT 89 (266)
Q Consensus 15 ~~~~~v~~~~~~-----d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~ 89 (266)
-++.+++.+... |++++++.|+++++++++.+.++-+++|.+. ++++|+++|++||.++|+|.+-+ + -
T Consensus 101 ~~g~~v~~~~~~wg~~v~p~~v~~~L~~~~~~~~V~~vH~ETSTGvln----pl~~I~~~~k~~g~l~iVDaVsS-~--G 173 (383)
T COG0075 101 RYGAEVVVLEVEWGEAVDPEEVEEALDKDPDIKAVAVVHNETSTGVLN----PLKEIAKAAKEHGALLIVDAVSS-L--G 173 (383)
T ss_pred HhCCceEEEeCCCCCCCCHHHHHHHHhcCCCccEEEEEeccCcccccC----cHHHHHHHHHHcCCEEEEEeccc-C--C
Confidence 345556555533 8999999998888899999999999999987 99999999999999999998774 4 3
Q ss_pred CcccccccCCCCcCeeeecccccCCchhhhhheecHHhhhccCCC-----------------C-CCCCCCCcHHHHHHHH
Q psy6547 90 GKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPG-----------------T-HGSTYGGNPLACKLAM 151 (266)
Q Consensus 90 g~~~~~~~~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~~-----------------~-~~~~~~~~~~~~~a~~ 151 (266)
|..+..+.||++.-+...-|++++. -.++++..+++..+.+... . ....++++.....+..
T Consensus 174 g~~~~vd~wgiDv~itgSQK~l~~P-PGla~v~~S~~a~e~~~~~~~~~~ylDL~~~~~~~~~~~~~p~Tppv~~i~aL~ 252 (383)
T COG0075 174 GEPLKVDEWGIDVAITGSQKALGAP-PGLAFVAVSERALEAIEERKHPSFYLDLKKWLKYMEKKGSTPYTPPVNLIYALR 252 (383)
T ss_pred CcccchhhcCccEEEecCchhccCC-CccceeEECHHHHHHHhcCCCCceeecHHHHHHHHhhcCCCCCCCCHHHHHHHH
Confidence 4567788889888777788999954 4589999999888777532 1 3455566666777888
Q ss_pred HHHHHHhhcc---HHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHH-HCCceec
Q psy6547 152 TALDVILEEN---MIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMK-DAGLVTK 227 (266)
Q Consensus 152 ~~l~~~~~~~---~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~-~~gi~~~ 227 (266)
.+|+.+..++ .+++.+++.+.+++.++. ++...+......... +..+.++. +.+.+++...++ +.|+.+.
T Consensus 253 ~al~~i~~EGle~r~~RH~~~~~a~r~~~~a-lGl~~~~~~~~~s~t---vta~~~P~--g~~~~~~~~~~~~~~g~~i~ 326 (383)
T COG0075 253 EALDLILEEGLEARIARHRRLAEALRAGLEA-LGLELFADPERRSPT---VTAIKVPE--GVDDKKVRRALLKEYGVEIA 326 (383)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH-cCCccccCcccCCCc---eEEEECCC--CCCcHHHHHHHHHhCCEEec
Confidence 9999888764 677778889999999998 876555532344455 77888887 555555555665 5599988
Q ss_pred cC----CCCEEEEeccCCCCHHHHHHHHHHHHHHHHHHh
Q psy6547 228 PI----SNNIIRLSPALNITEQELREGLDIIINTINTMA 262 (266)
Q Consensus 228 ~~----~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~~ 262 (266)
++ .+..+||......+.+++..++.+|+.++.++.
T Consensus 327 gg~~~l~gkifRIGhMG~~~~~dv~~~l~ale~~L~~~g 365 (383)
T COG0075 327 GGQGPLKGKIFRIGHMGNVRPEDVLAALAALEAALRELG 365 (383)
T ss_pred ccccccCccEEEEecCccCCHHHHHHHHHHHHHHHHHcC
Confidence 75 457899999999999999999999999998864
No 232
>TIGR03403 nifS_epsilon cysteine desulfurase, NifS family, epsilon proteobacteria type. Members of this family are the NifS-like cysteine desulfurase of the epsilon division of the Proteobacteria, similar to the NifS protein of nitrogen-fixing bacteria. Like NifS, and unlike IscS, this protein is found as part of a system of just two proteins, a cysteine desulfurase and a scaffold, for iron-sulfur cluster biosynthesis. This protein is called NifS by Olsen, et al. (PubMed:11123951), so we use this designation.
Probab=99.79 E-value=1.7e-17 Score=145.15 Aligned_cols=224 Identities=15% Similarity=0.156 Sum_probs=154.4
Q ss_pred CCCCceeecCC-----CHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcC
Q psy6547 16 HMPGYNIIPYN-----DVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTG 90 (266)
Q Consensus 16 ~~~~v~~~~~~-----d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g 90 (266)
.+.+++.++.+ |++++++.+ .+++++++++.++|++|.+. ++++|.++|+++|+++++|+++. ++.
T Consensus 113 ~G~~v~~v~~~~~g~~d~~~l~~~i--~~~t~lv~~~~~~n~tG~~~----~~~~I~~la~~~g~~~ivD~a~~-~g~-- 183 (382)
T TIGR03403 113 LGVEVTYLPINEQGTITAEQVREAI--TEKTALVSVMWANNETGMIF----PIKEIGEICKERGVLFHTDAVQA-IGK-- 183 (382)
T ss_pred CCCEEEEEecCCCCCCCHHHHHHhc--ccCCeEEEEEcccCCCcccc----CHHHHHHHHHHcCCEEEEechhh-cCC--
Confidence 56778888754 689999998 44678888988999999986 68999999999999999999984 321
Q ss_pred cccccccCCCCcCeeeec--ccccCCchhhhhheecHHhhhccCCC-------CCCCCCCCcHHHHHHHHHHHHHHhh--
Q psy6547 91 KLLAIHYEDVRPDIVILG--KALSGGLYPISAVLADDEVMGTLVPG-------THGSTYGGNPLACKLAMTALDVILE-- 159 (266)
Q Consensus 91 ~~~~~~~~~~~~d~~~~s--K~~~~g~~~~g~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~a~~~~l~~~~~-- 159 (266)
....... ..+|++++| |.+++ ..+|++..++.. .+.+. ......+.+..++.++..+++....
T Consensus 184 ~~~~~~~--~~~D~~~~s~~K~~gp--~G~g~l~vr~~~--~~~p~~~g~~~~~~~~~gt~~~~~~~al~~al~~~~~~~ 257 (382)
T TIGR03403 184 IPVDVQK--AGVDFLSFSAHKFHGP--KGVGGLYIRKGV--ELTPLFHGGEHMGGRRSGTLNVPYIVAMGEAMRLANEYL 257 (382)
T ss_pred CccCccc--cCCCEEEEcchhhCCC--CceEEEEECCCC--CCCCcccCCCCCCCcccCCcChHHHHHHHHHHHHHHHhH
Confidence 1222223 345666655 98762 225777665443 11111 1123456677777777778876544
Q ss_pred ccHHHHHHHHHHHHHHHhhccccc-CCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccCC--------
Q psy6547 160 ENMIENAYKMGEIFRSELSSPANK-SKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPIS-------- 230 (266)
Q Consensus 160 ~~~~~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~-------- 230 (266)
+...++++++++++.+.|++ ++. ..+.......+. ++.|.+.. .++.++...|.++||.++.+.
T Consensus 258 ~~~~~~~~~l~~~l~~~L~~-~~~~~~~~~~~~~~~~---~~~~~~~~---~~~~~~~~~L~~~gI~v~~g~~c~~~~~~ 330 (382)
T TIGR03403 258 DFEKSHVRRLRDRLEDALLE-LPDVFVVGDREHRVPN---TILISIKG---VEGEAMLWDLNKAGIAASTGSACASEDLE 330 (382)
T ss_pred HHHHHHHHHHHHHHHHHHhc-CCCEEEECCCCCCcCC---EEEEEeCC---CCHHHHHHhhccCCEEEEchhccCCCCCC
Confidence 34567888888888888877 432 111110011133 66666643 467788888999999998521
Q ss_pred ---------------CCEEEEeccCCCCHHHHHHHHHHHHHHHHHH
Q psy6547 231 ---------------NNIIRLSPALNITEQELREGLDIIINTINTM 261 (266)
Q Consensus 231 ---------------~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~ 261 (266)
.+.+|+|++..+|++|+|++++.|+++++++
T Consensus 331 ~~~v~~~~g~~~~~~~~~iR~s~~~~~t~~did~~~~~l~~~~~~~ 376 (382)
T TIGR03403 331 ANPVMVAIGADKELAHTAIRLSLSRFTTEEEIDYTIEVFKKAVQRL 376 (382)
T ss_pred cCHHHHHcCCChHHhCeeEEEECCCCCCHHHHHHHHHHHHHHHHHH
Confidence 2579999999999999999999999988764
No 233
>KOG1359|consensus
Probab=99.79 E-value=1.2e-17 Score=134.11 Aligned_cols=217 Identities=21% Similarity=0.256 Sum_probs=154.7
Q ss_pred CCCHHHHHHHHhc--CCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccc-cC-cCCcCcccccccCCC
Q psy6547 25 YNDVDALEAKLKS--NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQ-TG-LGRTGKLLAIHYEDV 100 (266)
Q Consensus 25 ~~d~~~l~~~l~~--~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~-~~-~~~~g~~~~~~~~~~ 100 (266)
|-|+.+++..+.. +.+.++|+.....++.|.+. ++++|.+++++||.++++||+| ++ ||.+|.+-+ +.+++
T Consensus 176 h~dv~~l~~~l~~a~k~r~klv~TDg~FSMDGdia----Pl~ei~~La~kYgaLlfiDecHaTgf~G~tGrGt~-E~~~v 250 (417)
T KOG1359|consen 176 HVDVFDLEHCLISACKMRLKLVVTDGVFSMDGDIA----PLEEISQLAKKYGALLFIDECHATGFFGETGRGTA-EEFGV 250 (417)
T ss_pred cchhHHHHHHHHHhhhheEEEEEecceeccCCCcc----cHHHHHHHHHhcCcEEEEeecccceeecCCCCChH-HHhCC
Confidence 4467777766643 23789999999999999998 9999999999999999999999 44 355555322 23443
Q ss_pred --CcCee--eecccccCCchhhhhheecHHhhhccCCC----CCCCCCCCcHHHHHHHHHHHHHH-hhccHHHHHHHHHH
Q psy6547 101 --RPDIV--ILGKALSGGLYPISAVLADDEVMGTLVPG----THGSTYGGNPLACKLAMTALDVI-LEENMIENAYKMGE 171 (266)
Q Consensus 101 --~~d~~--~~sK~~~~g~~~~g~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~ 171 (266)
++|++ +++|++||- -.||+.++.++.+.++.. ..+.+..+..+.+ +..+++.+ .+.....+.+.+.+
T Consensus 251 m~~vdiinsTLgKAlGga--~GGyttgp~~li~llrqr~RpylFSnslppavV~~--a~ka~dllm~s~~~i~~~~a~~q 326 (417)
T KOG1359|consen 251 MGDVDIINSTLGKALGGA--SGGYTTGPKPLISLLRQRSRPYLFSNSLPPAVVGM--AAKAYDLLMVSSKEIQSRQANTQ 326 (417)
T ss_pred CCcceehhhhhhhhhcCC--CCCCccCChhHHHHHHhcCCceeecCCCChhhhhh--hHHHHHHHHhhHHHHHHHHHHHH
Confidence 44544 499999853 377899999998777643 3333333333333 33444433 33456677777777
Q ss_pred HHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceec-------cCCCCEEEEeccCCCCH
Q psy6547 172 IFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTK-------PISNNIIRLSPALNITE 244 (266)
Q Consensus 172 ~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~-------~~~~~~iR~~~~~~~t~ 244 (266)
++++..+. . ++.. .|.+-|+..+.+.+ ..-+..+++.|+++||++. |.+...||+..+..+|+
T Consensus 327 rfr~~me~-a---GftI----sg~~hPI~pv~lGd--a~lA~~~ad~lLk~Gi~Vigfs~PvVP~gkariRVqiSAaHt~ 396 (417)
T KOG1359|consen 327 RFREFMEA-A---GFTI----SGASHPICPVMLGD--ARLASKMADELLKRGIYVIGFSYPVVPKGKARIRVQISAAHTE 396 (417)
T ss_pred HHHHHHHh-c---Ccee----cCCCCCccceeccc--HHHHHHHHHHHHhcCceEEeecCCcCCCCceEEEEEEehhcCH
Confidence 77777665 2 2222 22233688888888 4567889999999999985 33567899999999999
Q ss_pred HHHHHHHHHHHHHHHH
Q psy6547 245 QELREGLDIIINTINT 260 (266)
Q Consensus 245 ~~i~~~~~~l~~~~~~ 260 (266)
||+|++++++.++.+.
T Consensus 397 edid~~i~Af~~vgr~ 412 (417)
T KOG1359|consen 397 EDIDRLIEAFSEVGRF 412 (417)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999999887654
No 234
>PRK10534 L-threonine aldolase; Provisional
Probab=99.78 E-value=4.2e-18 Score=146.25 Aligned_cols=211 Identities=14% Similarity=0.162 Sum_probs=141.4
Q ss_pred CHHHHHHHHhcC----CCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCc---CcccccccCC
Q psy6547 27 DVDALEAKLKSN----PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRT---GKLLAIHYED 99 (266)
Q Consensus 27 d~~~l~~~l~~~----~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~---g~~~~~~~~~ 99 (266)
|+++|++++..+ .++++++++.++ +|.+ ++.+.+++|.++|++||+++++||+|. |... +.........
T Consensus 112 d~~~l~~~i~~~~~~~~~~~lv~l~np~--~G~v-~~~~~l~~i~~~~~~~~~~lvvDEA~~-~~~~~~~~~~~~~~~~~ 187 (333)
T PRK10534 112 PLDKVAAKIKPDDIHFARTRLLSLENTH--NGKV-LPREYLKQAWEFTRERNLALHVDGARI-FNAVVAYGCELKEITQY 187 (333)
T ss_pred CHHHHHHhhcccCcCcccceEEEEecCC--CCee-cCHHHHHHHHHHHHHcCCeEEeeHHHH-HHHHHHcCCCHHHHHhc
Confidence 689999888432 147788877433 4766 899999999999999999999999985 3211 2111100001
Q ss_pred CCcCeeeecccccCCchhhh-hheecHHhhhccCCCCCCC--CCCCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHH
Q psy6547 100 VRPDIVILGKALSGGLYPIS-AVLADDEVMGTLVPGTHGS--TYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSE 176 (266)
Q Consensus 100 ~~~d~~~~sK~~~~g~~~~g-~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~ 176 (266)
.+.-+++|||+++. ++| |+++++++++.+....... .+..+.+.++++..+|+.. .+..++..+.++++.+.
T Consensus 188 ~~~~~~s~SK~~~~---~~G~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~a~~~~~l~~~--~~~~~~~~~~r~~l~~~ 262 (333)
T PRK10534 188 CDSFTICLSKGLGT---PVGSLLVGNRDYIKRARRWRKMTGGGMRQAGILAAAGLYALKHN--VARLQEDHDNAAWLAEQ 262 (333)
T ss_pred CCEEEEEeEcCCCC---cccceEEcCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHhh--HHHHHHHHHHHHHHHHH
Confidence 11224569998873 467 5778999888776433221 2233445566666666532 23344455567788888
Q ss_pred hhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccCCCCEEEEeccCCCCHHHHHHHHHHHHH
Q psy6547 177 LSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIIN 256 (266)
Q Consensus 177 l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~iR~~~~~~~t~~~i~~~~~~l~~ 256 (266)
|++ ++.. . .++.++ |+++.++. .+..++.+.|+++||.++++ ..+|++.+..+|++++++++++|++
T Consensus 263 L~~-~g~~---~-~~~~~n---fv~~~~~~---~~~~~~~~~l~~~gi~v~~~--~~~rl~~~~r~t~e~~~~~~~~l~~ 329 (333)
T PRK10534 263 LRE-AGAD---V-MRQDTN---MLFVRVGE---EQAAALGEYMRERNVLINAS--PIVRLVTHLDVSREQLAEVVAHWRA 329 (333)
T ss_pred HHh-CCCc---c-CCCCce---EEEEECCc---hhHHHHHHHHHHcCeeecCC--ceEEEEEEeCCCHHHHHHHHHHHHH
Confidence 887 5432 2 223466 88888763 24678899999999999986 3689987777899999999999997
Q ss_pred HHH
Q psy6547 257 TIN 259 (266)
Q Consensus 257 ~~~ 259 (266)
++.
T Consensus 330 ~~~ 332 (333)
T PRK10534 330 FLA 332 (333)
T ss_pred Hhc
Confidence 764
No 235
>PRK03967 histidinol-phosphate aminotransferase; Provisional
Probab=99.78 E-value=3.7e-18 Score=146.77 Aligned_cols=213 Identities=17% Similarity=0.142 Sum_probs=140.4
Q ss_pred CCCCCCceeecC-----CCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCC
Q psy6547 14 GPHMPGYNIIPY-----NDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGR 88 (266)
Q Consensus 14 ~~~~~~v~~~~~-----~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~ 88 (266)
...+.+++.++. .|++++++.+ ++++++++..++|++|.+ ++. ++|.+++ ++++++|+||+|.+|..
T Consensus 112 ~~~g~~~~~v~~~~~~~~d~~~l~~~~---~~~~~v~~~~P~NPtG~~-~~~---~~l~~i~-~~~~~ii~De~y~~~~~ 183 (337)
T PRK03967 112 KLNGIPVIDVPLKEDFTIDGERIAEKA---KNASAVFICSPNNPTGNL-QPE---EEILKVL-ETGKPVVLDEAYAEFSG 183 (337)
T ss_pred HHcCCeEEEeecCCCCCcCHHHHHHhc---cCCCEEEEeCCCCCCCCC-CCH---HHHHHHH-hcCCEEEEECchhhhcc
Confidence 345667777664 2567787765 245677776678889987 555 4555566 47999999999987732
Q ss_pred cCcccccccCCCCcCeeeeccccc-CCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHhh-ccHHHHH
Q psy6547 89 TGKLLAIHYEDVRPDIVILGKALS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILE-ENMIENA 166 (266)
Q Consensus 89 ~g~~~~~~~~~~~~d~~~~sK~~~-~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~-~~~~~~~ 166 (266)
.......+.......+.+|||.++ +| +|+||+++++++++.+.... ..++.+.+++.++..+++..+. .+..+..
T Consensus 184 ~~~~~~~~~~~~vi~l~S~SK~~~l~G-lRiG~iv~~~~~i~~~~~~~--~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~ 260 (337)
T PRK03967 184 KSLIGLIDEYPNLILLRTFSKAFGLAG-IRAGYAIANEEIIDALYRIK--PPFSLNILTMKIVRLALDHYDLIEERIDYI 260 (337)
T ss_pred cchHHHHhhCCCEEEEecchHhhcchh-hhheeeecCHHHHHHHHhhc--CCCCCCHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 111101111222334455999999 99 99999999998888776533 3456778888888877753221 1223344
Q ss_pred HHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccC---CCCEEEEeccCCCC
Q psy6547 167 YKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPI---SNNIIRLSPALNIT 243 (266)
Q Consensus 167 ~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~---~~~~iR~~~~~~~t 243 (266)
.+.++.+.+.|.+ . . .++.++ ++|+.++ +.+.|+++||.+++. ..+++|++ ..+
T Consensus 261 ~~~r~~l~~~L~~-~---~----~~~~~~---~~~~~~~---------~~~~l~~~gi~v~~~~~~~~~~~Ri~---~~~ 317 (337)
T PRK03967 261 IKERERVRRELGE-Y---A----YPSDAN---FLLLKLD---------AYDYLLENGIVVRKLSGRLEGHIRVT---VGK 317 (337)
T ss_pred HHHHHHHHHHhcc-C---c----CCCCCc---EEEEhHH---------HHHHHHHCCEEEEeCCCCCCCeEEEe---cCC
Confidence 4555555555554 2 1 234566 7876552 678889999999754 34789999 336
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy6547 244 EQELREGLDIIINTINT 260 (266)
Q Consensus 244 ~~~i~~~~~~l~~~~~~ 260 (266)
.++.+++++.|+++...
T Consensus 318 ~~~~~~l~~~l~~~~~~ 334 (337)
T PRK03967 318 REENDEFIKALKEIKEG 334 (337)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 78888999998887654
No 236
>PRK07908 hypothetical protein; Provisional
Probab=99.78 E-value=6.3e-18 Score=146.04 Aligned_cols=218 Identities=10% Similarity=0.068 Sum_probs=144.7
Q ss_pred ccCCCCCCceeecCC-----CHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCc
Q psy6547 12 EFGPHMPGYNIIPYN-----DVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGL 86 (266)
Q Consensus 12 ~~~~~~~~v~~~~~~-----d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~ 86 (266)
.+...+.+++.++.+ |++ .+ .++++++++..++|++|.+ ++. ++|.++|+ ++.++|+||+|..+
T Consensus 112 ~~~~~G~~i~~v~~~~~~~~d~~----~l--~~~~~~i~l~np~NPTG~~-~~~---~~l~~l~~-~~~~iIvDe~y~~~ 180 (349)
T PRK07908 112 ALRAAGIPVHRVVLDPPFRLDPA----AV--PDDADLVVIGNPTNPTSVL-HPA---EQLLALRR-PGRILVVDEAFADA 180 (349)
T ss_pred HHHHcCCEEEeeccCcccCcChh----Hh--ccCCCEEEEcCCCCCCCCC-cCH---HHHHHHHh-cCCEEEEECcchhh
Confidence 344566777777653 233 23 2357788887778889988 554 46667775 47888899999876
Q ss_pred CCcCcccccccCC--CCcCeeeeccccc-CCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHH--h-hc
Q psy6547 87 GRTGKLLAIHYED--VRPDIVILGKALS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVI--L-EE 160 (266)
Q Consensus 87 ~~~g~~~~~~~~~--~~~d~~~~sK~~~-~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~--~-~~ 160 (266)
. .+...++.... ....+.+|||.++ +| +|+||+++++++++.+..... .+..+++.+.++...++.. . -+
T Consensus 181 ~-~~~~~~l~~~~~~~~i~i~S~SK~~~l~G-lRiG~~~~~~~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~~~~ 256 (349)
T PRK07908 181 V-PGEPESLAGDDLPGVLVLRSLTKTWSLAG-LRVGYALGAPDVLARLTRGRA--HWPVGTLQLEAIAACCAPRAVAEAA 256 (349)
T ss_pred c-cCCccccccccCCCEEEEeecccccCCcc-ceeeeeecCHHHHHHHHhcCC--CCCccHHHHHHHHHHhcccchHHHH
Confidence 2 23322221111 1223345899998 99 999999999998888765332 3445666665555444310 0 12
Q ss_pred cHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccC------CCCEE
Q psy6547 161 NMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPI------SNNII 234 (266)
Q Consensus 161 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~------~~~~i 234 (266)
+..++++++++++.+.|++ .+ +....+..|. ++|+.+++ .+++.+.|+++||.+.++ ..+++
T Consensus 257 ~~~~~~~~~r~~l~~~L~~-~~---~~~~~p~~g~---~~~~~~~~-----~~~~~~~l~~~gI~v~~g~~f~~~~~~~v 324 (349)
T PRK07908 257 ADAARLAADRAEMVAGLRA-VG---ARVVDPAAAP---FVLVRVPD-----AELLRKRLRERGIAVRRGDTFPGLDPDYL 324 (349)
T ss_pred HHHHHHHHHHHHHHHHHHh-CC---cEeccCCCce---EEEEECCc-----HHHHHHHHHhCCEEEEECCCCCCCCCCeE
Confidence 3566677777788888877 42 2221224577 89998765 467888999999999875 25799
Q ss_pred EEeccCCCCHHHHHHHHHHHHHHHH
Q psy6547 235 RLSPALNITEQELREGLDIIINTIN 259 (266)
Q Consensus 235 R~~~~~~~t~~~i~~~~~~l~~~~~ 259 (266)
|+++ .++++++++++.|++++.
T Consensus 325 Ris~---~~~~~~~~l~~al~~~~~ 346 (349)
T PRK07908 325 RLAV---RPRAEVPVLVQALAEILK 346 (349)
T ss_pred EEEe---CCCccHHHHHHHHHHHHh
Confidence 9995 478899999999988764
No 237
>TIGR01977 am_tr_V_EF2568 cysteine desulfurase family protein. This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family. Related families contain members active as cysteine desulfurases, selenocysteine lyases, or both. The members of this family form a distinct clade and all are shorter at the N-terminus. The function of this subfamily is unknown.
Probab=99.78 E-value=4.2e-17 Score=142.27 Aligned_cols=223 Identities=15% Similarity=0.145 Sum_probs=152.2
Q ss_pred CCCceeecC-----CCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCc
Q psy6547 17 MPGYNIIPY-----NDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGK 91 (266)
Q Consensus 17 ~~~v~~~~~-----~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~ 91 (266)
+.+++.++. .|++++++.+ .+++++++++.++|++|.+. ++++|.++|+++|+++|+|++++ +|..
T Consensus 111 g~~~~~v~~~~~~~~d~~~l~~~~--~~~~~~v~~~~~~n~tG~~~----~~~~i~~l~~~~~~~livD~a~~-~g~~-- 181 (376)
T TIGR01977 111 GVEITIVKCDNEGLISPERIKRAI--KTNTKLIVVSHASNVTGTIL----PIEEIGELAQENGIFFILDAAQT-AGVI-- 181 (376)
T ss_pred CcEEEEEecCCCCCcCHHHHHHhc--CCCCeEEEEECCCCCccccC----CHHHHHHHHHHcCCEEEEEhhhc-cCcc--
Confidence 556666653 3799999999 44688999999999999987 78999999999999999999994 3221
Q ss_pred ccccccCCCCcCeeeecccccCCchhhhhheecHHh-hhccCCCC----------------CCCCCCCcHHHHHHHHHHH
Q psy6547 92 LLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEV-MGTLVPGT----------------HGSTYGGNPLACKLAMTAL 154 (266)
Q Consensus 92 ~~~~~~~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~-~~~~~~~~----------------~~~~~~~~~~~~~a~~~~l 154 (266)
.+....++.+.-+.+..|+++++ ...|+++.+++. .+.+.... .....+.+.....+..+++
T Consensus 182 ~~~~~~~~~D~~~~s~~K~l~~p-~g~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~t~~~~~~~a~~~al 260 (376)
T TIGR01977 182 PIDMTELAIDMLAFTGHKGLLGP-QGTGGLYIREGIKLKPLKSGGTGSHSALIDQPSELPDRFESGTLNTPGIAGLNAGI 260 (376)
T ss_pred CCCchhcCCCEEEecccccccCC-CCceEEEEcCCcCcCceecCCCccccccccccccchhhccCCCCCHHHHHHHHHHH
Confidence 22333344433344466998854 346666655543 22221110 0112244566677777888
Q ss_pred HHHhhc---cHHHHHHHHHHHHHHHhhccccc-CCCcc-cEEecCccceeeEEEEeeCccchHHHHHHHHHHC-Cceecc
Q psy6547 155 DVILEE---NMIENAYKMGEIFRSELSSPANK-SKASF-KLSSGGLKKSINTLILSVSAILEVYDVCIKMKDA-GLVTKP 228 (266)
Q Consensus 155 ~~~~~~---~~~~~~~~~~~~l~~~l~~~~~~-~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~-gi~~~~ 228 (266)
+.+.+. .+.++.+++.+++++.|++ ... ..+.. .....+. +++|.++. .+..++.+.|.++ ||.++.
T Consensus 261 ~~~~~~g~~~~~~~~~~l~~~~~~~l~~-~~~~~~~~~~~~~~~~~---~v~~~~~~---~~~~~~~~~L~~~~gi~v~~ 333 (376)
T TIGR01977 261 KFIEKIGIANIAKKECMLTEKLLNGLRE-INKVKIYGPADPANRVG---VVSFTVEG---IDSEEVADILDEKFDIATRT 333 (376)
T ss_pred HHHHHhCHHHHHHHHHHHHHHHHHHHhc-CCCeEEeCCCCccccCC---eEEEEECC---CCHHHHHHHHhccCCEEEEc
Confidence 887764 4678888899999998887 332 11111 0111233 78888754 4678899999987 998865
Q ss_pred C--------------CCCEEEEeccCCCCHHHHHHHHHHHHH
Q psy6547 229 I--------------SNNIIRLSPALNITEQELREGLDIIIN 256 (266)
Q Consensus 229 ~--------------~~~~iR~~~~~~~t~~~i~~~~~~l~~ 256 (266)
+ ..+.+|++++..+|++|+++++++|++
T Consensus 334 g~~~~~~~~~~~g~~~~~~iRis~~~~~t~~dv~~~~~~l~~ 375 (376)
T TIGR01977 334 GLHCAPLAHKTIGTFATGTIRLSLGYFNTEEEIEKLLEALSE 375 (376)
T ss_pred ccccchHHHHHhCCCCCCeEEEecCCCCCHHHHHHHHHHHhh
Confidence 3 247899999999999999999999975
No 238
>TIGR03812 tyr_de_CO2_Arch tyrosine decarboxylase MnfA. Members of this protein family are the archaeal form, MnfA, of tyrosine decarboxylase, and are involved in methanofuran biosynthesis. Members show clear homology to the Enterococcus form, Tdc, that is involved in tyrosine decarboxylation for resistance to acidic conditions.
Probab=99.76 E-value=2.5e-17 Score=143.54 Aligned_cols=223 Identities=13% Similarity=0.102 Sum_probs=148.6
Q ss_pred CCCCCceeecCC-----CHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCC-
Q psy6547 15 PHMPGYNIIPYN-----DVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGR- 88 (266)
Q Consensus 15 ~~~~~v~~~~~~-----d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~- 88 (266)
.++.+++.++++ |++++++.++++ ..+++++.+ .+++|.+. ++++|.++|+++|+++++|++|.++..
T Consensus 125 ~~G~~~~~v~~~~~~~~d~~~l~~~l~~~-~~~vv~~~~-~~~tG~~~----~~~~i~~l~~~~~~~livD~a~~~~~~~ 198 (373)
T TIGR03812 125 MLGLELRYAPLDEDYTVDVKDVEDLIDDN-TIGIVGIAG-TTELGQID----DIEELSKIALENGIYLHVDAAFGGFVIP 198 (373)
T ss_pred HcCCeEEEEeeCCCCCcCHHHHHHHHhhC-cEEEEEECC-CCCCCccC----CHHHHHHHHHHcCCeEEEEcCchhHHHH
Confidence 346677778763 799999999432 234555654 56788875 899999999999999999999964310
Q ss_pred ---cCccc-ccccCCCCcCeee--ecccccCCchhhhhhe-ecHHhhhccCCCCCC--C------CCCCcHHHHHHHHHH
Q psy6547 89 ---TGKLL-AIHYEDVRPDIVI--LGKALSGGLYPISAVL-ADDEVMGTLVPGTHG--S------TYGGNPLACKLAMTA 153 (266)
Q Consensus 89 ---~g~~~-~~~~~~~~~d~~~--~sK~~~~g~~~~g~~~-~~~~~~~~~~~~~~~--~------~~~~~~~~~~a~~~~ 153 (266)
.|... ..+..-...|..+ ..|+..++ .|.|+++ .++++.+.+.....+ . ..+.+....+++..+
T Consensus 199 ~~~~~~~~~~~d~~~~~~d~~~~s~~K~~~~~-~~~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~gt~~~~~~~~~~~~ 277 (373)
T TIGR03812 199 FLKKGYNPPPFDFSLPGVQSITIDPHKMGLSP-IPAGGILFRSKSYLKYLSVDAPYLTVKKQATITGTRSGASAAATYAV 277 (373)
T ss_pred HHhcCCCCCCccccCCCCCEEEECccccCCCc-CCceEEEEeCHHHHhhhcccCcccCCCCCcceEeechhHHHHHHHHH
Confidence 00000 0111101234444 44855456 6777554 577776655321111 0 013345567777788
Q ss_pred HHHHhhc---cHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccC-
Q psy6547 154 LDVILEE---NMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPI- 229 (266)
Q Consensus 154 l~~~~~~---~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~- 229 (266)
++.+..+ +..+++.++++++++.|++ ++...+. .+... ++.+..++ ..++.++|.++||.++..
T Consensus 278 l~~l~~~g~~~~~~~~~~~~~~l~~~L~~-~g~~~~~---~~~~~---~v~~~~~~-----~~~v~~~L~~~gi~v~~~~ 345 (373)
T TIGR03812 278 IKYLGREGYRKIVAECMENTRYLVEELKK-IGFEPVI---EPVLN---IVAFEVDD-----PEEVRKKLRDRGWYVSVTR 345 (373)
T ss_pred HHHhCHHHHHHHHHHHHHHHHHHHHHHHh-CCCeEEc---CCCce---EEEEEeCC-----HHHHHHHHHHCCceeccCC
Confidence 8876553 4778899999999999988 5432111 12223 66666544 458999999999999876
Q ss_pred CCCEEEEeccCCCCHHHHHHHHHHHHH
Q psy6547 230 SNNIIRLSPALNITEQELREGLDIIIN 256 (266)
Q Consensus 230 ~~~~iR~~~~~~~t~~~i~~~~~~l~~ 256 (266)
.++++|++++..+|++|++++++.|++
T Consensus 346 ~~~~iRis~~~~~t~edid~l~~~L~~ 372 (373)
T TIGR03812 346 CPKALRIVVMPHVTREHIEEFLEDLKE 372 (373)
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHhh
Confidence 567999999999999999999999975
No 239
>PRK13580 serine hydroxymethyltransferase; Provisional
Probab=99.76 E-value=1.1e-16 Score=140.70 Aligned_cols=217 Identities=17% Similarity=0.165 Sum_probs=145.1
Q ss_pred CHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcC-cccc---cccCCCCc
Q psy6547 27 DVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTG-KLLA---IHYEDVRP 102 (266)
Q Consensus 27 d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g-~~~~---~~~~~~~~ 102 (266)
|+++++++++. .++.+++....+.++ .. ++++|+++|+++|+++++|++|+ +|..| .... ....+++.
T Consensus 208 D~d~l~~~~~~--~~plvii~g~S~~~~-~~----dl~~i~eia~~~gA~L~VD~AH~-~Gligg~~~~~~~~~~~~~D~ 279 (493)
T PRK13580 208 DYDEIAALARE--FKPLILVAGYSAYPR-RV----NFAKLREIADEVGAVLMVDMAHF-AGLVAGKVFTGDEDPVPHADI 279 (493)
T ss_pred CHHHHHHHHhh--cCCEEEEeCccccCC-Cc----CHHHHHHHHHHcCCEEEEECchh-hceeccccchhhcCCCCCCcE
Confidence 78999999943 455666666555444 44 89999999999999999999993 33222 1111 01112333
Q ss_pred CeeeecccccCCchhhhhheecHHhhhccCCCCCCCCC-CCcHHHHHHHHHHHHHHhhc---cHHHHHHHHHHHHHHHhh
Q psy6547 103 DIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTY-GGNPLACKLAMTALDVILEE---NMIENAYKMGEIFRSELS 178 (266)
Q Consensus 103 d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~a~~~~l~~~~~~---~~~~~~~~~~~~l~~~l~ 178 (266)
-+.+++|+|.|. +.|++++++++.+.+.... ...+ ++.+...+++..++..+.++ ++.+++.++.+++++.|.
T Consensus 280 vtgT~hKaL~GP--~GG~I~~~~~l~~~L~~a~-P~i~gg~l~p~iAA~avAl~e~~~~ef~~y~~~l~~Na~~La~~L~ 356 (493)
T PRK13580 280 VTTTTHKTLRGP--RGGLVLAKKEYADAVDKGC-PLVLGGPLPHVMAAKAVALAEARTPEFQKYAQQVVDNARALAEGFL 356 (493)
T ss_pred EEeCChhhccCC--CeEEEEecHHHHHHHhhCC-CcccCCCccHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHH
Confidence 344488999654 3688999998888774221 1111 22222444444455555433 378999999999999998
Q ss_pred cccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccC-------C---CCEEEEeccC----CCCH
Q psy6547 179 SPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPI-------S---NNIIRLSPAL----NITE 244 (266)
Q Consensus 179 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~-------~---~~~iR~~~~~----~~t~ 244 (266)
+ .+...+. .|.++|++.+.+.+. +.....+.+.|.+.||++.+. + ...||++++. .+++
T Consensus 357 ~-~G~~vv~-----ggTdshIV~V~lg~~-~~~g~~a~~~L~e~GI~vn~i~~Ptvp~g~~~~srLRIg~~A~ttrg~te 429 (493)
T PRK13580 357 K-RGARLVT-----GGTDNHLVLIDVTSF-GLTGRQAESALLDAGIVTNRNSIPSDPNGAWYTSGIRLGTPALTTLGMGS 429 (493)
T ss_pred h-cCCCccC-----CCCCCCEEEEEeCCH-HHHHHHHHHHHHHCCeEEccccCCCCCCCCCCCceEEeccchhhhcCCCH
Confidence 8 5543321 234567999999762 223456777899999998732 2 5789999887 6679
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy6547 245 QELREGLDIIINTINTM 261 (266)
Q Consensus 245 ~~i~~~~~~l~~~~~~~ 261 (266)
+|++++++.|.++++..
T Consensus 430 edi~~iad~l~~~l~~~ 446 (493)
T PRK13580 430 DEMDEVAELIVKVLSNT 446 (493)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 99999999999888653
No 240
>cd06452 SepCysS Sep-tRNA:Cys-tRNA synthase. This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Cys-tRNA(Cys) is produced by O-phosphoseryl-tRNA synthetase which ligates O-phosphoserine (Sep) to tRNA(Cys), and Sep-tRNA:Cys-tRNA synthase (SepCysS) converts Sep-tRNA(Cys) to Cys-tRNA(Cys), in methanogenic archaea. SepCysS forms a dimer, each monomer is composed of a large and small domain; the larger, a typical pyridoxal 5'-phosphate (PLP)-dependent-like enzyme fold. In the active site of each monomer, PLP is covalently bound to a conserved Lys residue near the dimer interface.
Probab=99.75 E-value=1.7e-16 Score=137.79 Aligned_cols=230 Identities=12% Similarity=0.078 Sum_probs=146.9
Q ss_pred CCCCCceeecC-------CCHHHHHHHHhcC-----CCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEecc
Q psy6547 15 PHMPGYNIIPY-------NDVDALEAKLKSN-----PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEV 82 (266)
Q Consensus 15 ~~~~~v~~~~~-------~d~~~l~~~l~~~-----~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~ 82 (266)
..+.+++.++. .|++++++.+++. +++++++++++++++|.+. ++++|.++|+++|+++|+|++
T Consensus 102 ~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~lv~l~~p~n~tG~~~----~~~~i~~~~~~~~~~vivD~a 177 (361)
T cd06452 102 RAGLNVREVPNTGHPEYHITPEGYAEVIEEVKDEFGKPPALALLTHVDGNYGNLH----DAKKIAKVCHEYGVPLLLNGA 177 (361)
T ss_pred hcCCEEEEEecCCCCCcccCHHHHHHHHHHHhhccCCCceEEEEECCCCCCeeec----cHHHHHHHHHHcCCeEEEECC
Confidence 34566666653 2789999988531 3688999888888888775 899999999999999999999
Q ss_pred ccCcCCcCcccccccCCCCcCeeeecccccCCchhhhhheecHHhhhccCCCCCC------CCC--CCcHHHHHHHHHHH
Q psy6547 83 QTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHG------STY--GGNPLACKLAMTAL 154 (266)
Q Consensus 83 ~~~~~~~g~~~~~~~~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~~~~~------~~~--~~~~~~~~a~~~~l 154 (266)
|. ++. ..+....++.+..+.+++|+++++ .++|++++++++.+.+...... ..+ +.....+.++.+++
T Consensus 178 ~~-~g~--~~~~~~~~~~d~~~~s~~K~l~~~-~~~G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al 253 (361)
T cd06452 178 YT-VGR--MPVSGKELGADFIVGSGHKSMAAS-APIGVLATTEEWADIVFRTSQMFKIKEVELLGCTLRGAPLVTLMASF 253 (361)
T ss_pred cc-cCC--cCCCHHHcCCCEEEecCCccccCC-CCeEEEEECHHHHHHHhccccccccceeeeeccccCchHHHHHHHHH
Confidence 95 221 123333445555566699999977 7899999999888877543211 101 11112233444455
Q ss_pred HHHhh-ccHHHHHHHHHHHHHHHhhccc-ccCCCcccEEecCccceeeEEEEeeC------ccchHHHHHHHHHHCCcee
Q psy6547 155 DVILE-ENMIENAYKMGEIFRSELSSPA-NKSKASFKLSSGGLKKSINTLILSVS------AILEVYDVCIKMKDAGLVT 226 (266)
Q Consensus 155 ~~~~~-~~~~~~~~~~~~~l~~~l~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~------~~~~~~~~~~~l~~~gi~~ 226 (266)
+.... -+...+..++.+++++.|.+ + +...+.. ..+..+ ++.+....- ......++.++|+++||.+
T Consensus 254 ~~~~~~~~~~~~~~~~~~~l~~~L~~-l~g~~v~~~-~~~~~n---~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gI~~ 328 (361)
T cd06452 254 PHVKERVKRWDEEVEKARWFVAELEK-IEGIKQLGE-KPKNHD---LMFFETPSFDEIAKKHKRRGYFLYSELKKRGIHG 328 (361)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc-CCCeEEECC-CCCCCc---eEEEEcCCcchhhhhccccchhHHHHHHHcCceE
Confidence 43321 12223333445778888887 5 2222211 112233 766665420 0122347999999999997
Q ss_pred cc-CCCCEEEEeccCCCCHHHHHHHHHHHHHHH
Q psy6547 227 KP-ISNNIIRLSPALNITEQELREGLDIIINTI 258 (266)
Q Consensus 227 ~~-~~~~~iR~~~~~~~t~~~i~~~~~~l~~~~ 258 (266)
.. +..+++|++.. ..++++++.+++.|+++.
T Consensus 329 ~~~~~~~~~ri~~~-g~~~e~~~~l~~al~~~~ 360 (361)
T cd06452 329 IKPGLTRYFKLSTY-GLTWEQVEYVVDAFKEIA 360 (361)
T ss_pred EcCCCceEEEEEec-CCCHHHHHHHHHHHHHHh
Confidence 54 33467899853 369999999999998654
No 241
>COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]
Probab=99.75 E-value=4.4e-16 Score=131.91 Aligned_cols=226 Identities=19% Similarity=0.208 Sum_probs=163.4
Q ss_pred CCCceeecCC-----CHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCc
Q psy6547 17 MPGYNIIPYN-----DVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGK 91 (266)
Q Consensus 17 ~~~v~~~~~~-----d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~ 91 (266)
+-+|.+++-+ |+++|+++| .+++.+|.+..++|..|++. ++++|.++|+++|+++++|.++. + |.
T Consensus 115 g~~Vtyl~V~~~G~v~~e~L~~al--~~~T~LVSim~aNnE~G~IQ----pI~ei~~i~k~~~i~fHvDAvQa-~---Gk 184 (386)
T COG1104 115 GFEVTYLPVDSNGLVDLEQLEEAL--RPDTILVSIMHANNETGTIQ----PIAEIGEICKERGILFHVDAVQA-V---GK 184 (386)
T ss_pred CCeEEEeCCCCCCeEcHHHHHHhc--CCCceEEEEEecccCeeecc----cHHHHHHHHHHcCCeEEEehhhh-c---Cc
Confidence 5566777655 799999999 56799999999999999998 99999999999999999999994 4 33
Q ss_pred ccccccCCCCcCeeeec--ccccCCchhhhhheecHHhhhccCCCCC-------CCCCCCcHHHHHHHHHHHHHHhh--c
Q psy6547 92 LLAIHYEDVRPDIVILG--KALSGGLYPISAVLADDEVMGTLVPGTH-------GSTYGGNPLACKLAMTALDVILE--E 160 (266)
Q Consensus 92 ~~~~~~~~~~~d~~~~s--K~~~~g~~~~g~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~a~~~~l~~~~~--~ 160 (266)
. +++......|+.+|| |..|+ =.+|++..++... +.+..+ ...-+.|..+.++...|++.... +
T Consensus 185 i-pi~~~~~~vD~ls~SaHK~~Gp--kGiGaLyv~~~~~--~~p~i~GGgQE~g~RsGTenv~~Ivg~~~A~~~a~~~~~ 259 (386)
T COG1104 185 I-PIDLEELGVDLLSFSAHKFGGP--KGIGALYVRPGVR--LEPLIHGGGQERGLRSGTENVPGIVGFGKAAEIAVEELE 259 (386)
T ss_pred e-eccccccCcceEEeehhhccCC--CceEEEEECCCCc--cCceeccCcCCCCCCCCCccHHHHHHHHHHHHHHHHHHH
Confidence 2 333334458888877 65553 3478887755432 222211 12224466666666666766543 4
Q ss_pred cHHHHHHHHHHHHHHHhhcccccCCC-cccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccC----------
Q psy6547 161 NMIENAYKMGEIFRSELSSPANKSKA-SFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPI---------- 229 (266)
Q Consensus 161 ~~~~~~~~~~~~l~~~l~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~---------- 229 (266)
....++..+++++.+.|.+..+...+ ........+ .+.|.++. ...+.+...|..+||.+..+
T Consensus 260 ~~~~~~~~lr~~l~~~l~~~~p~~~~~g~~~~rlP~---~~~~~f~g---v~gE~ll~~L~~~gI~vStGSACsS~~~~p 333 (386)
T COG1104 260 EENARLRKLRDRLEDGLLEIIPDVYLNGDDEPRLPN---ILNFSFPG---VEGESLLLALDLAGIAVSTGSACSSGSLEP 333 (386)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCcEEEcCCcccCCCC---eEEEEeCC---CcHHHHHHhccccCeEEeccccccCCCCCc
Confidence 57788899999999999973333111 111233445 66677765 56788888888999999754
Q ss_pred -------------CCCEEEEeccCCCCHHHHHHHHHHHHHHHHHHhh
Q psy6547 230 -------------SNNIIRLSPALNITEQELREGLDIIINTINTMAA 263 (266)
Q Consensus 230 -------------~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~~~ 263 (266)
..+.+|||++..+|++|++++++.+.++++++..
T Consensus 334 ShVL~AmG~~~e~a~~siR~S~g~~tt~eei~~~~~~l~~~i~~lr~ 380 (386)
T COG1104 334 SHVLRAMGISEELAHGSIRFSLGRFTTEEEIDAAAEALKEIIKRLRE 380 (386)
T ss_pred cHHHHHcCCChHHhCccEEEEcCCCCCHHHHHHHHHHHHHHHHHHhh
Confidence 1278999999999999999999999999988654
No 242
>PF00266 Aminotran_5: Aminotransferase class-V; InterPro: IPR000192 Aminotransferases share certain mechanistic features with other pyridoxal- phosphate dependent enzymes, such as the covalent binding of the pyridoxal- phosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. This entry represents the class V aminotransferases and the related, though functionally distinct, cysteine desulfurases.; GO: 0008152 metabolic process; PDB: 3FFR_A 1N2T_B 1ELQ_A 1N31_A 1ELU_B 1QZ9_A 1VJO_A 3ISL_B 1BJO_B 1BJN_B ....
Probab=99.73 E-value=1.5e-16 Score=138.69 Aligned_cols=214 Identities=20% Similarity=0.250 Sum_probs=155.0
Q ss_pred CCCceeecC-----CCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCc
Q psy6547 17 MPGYNIIPY-----NDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGK 91 (266)
Q Consensus 17 ~~~v~~~~~-----~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~ 91 (266)
+.+|+.++. .|++++++.+ +++++++.+..+.+.+|... ++++|.++|+++|+++++|-+++ ++. .
T Consensus 113 g~~v~~i~~~~~~~~~~~~~~~~l--~~~~~lv~~~~~~~~tG~~~----pi~~I~~~~~~~~~~~~vD~~~~-~g~--~ 183 (371)
T PF00266_consen 113 GAEVRVIPADPGGSLDLEDLEEAL--NPDTRLVSISHVENSTGVRN----PIEEIAKLAHEYGALLVVDAAQS-AGC--V 183 (371)
T ss_dssp TEEEEEEEEGTTSSCSHHHHHHHH--HTTESEEEEESBETTTTBBS----SHHHHHHHHHHTTSEEEEE-TTT-TTT--S
T ss_pred hhhhccccccccchhhhhhhhhhh--ccccceEEeecccccccEEe----eeceehhhhhccCCceeEechhc-ccc--c
Confidence 455655553 2789999999 36899999999999999987 89999999999999999999994 322 2
Q ss_pred ccccccCCCCcCeee--ecccccCCchhhhhheecHHhhhccCCCCCCCC---------------------CCCcHHHHH
Q psy6547 92 LLAIHYEDVRPDIVI--LGKALSGGLYPISAVLADDEVMGTLVPGTHGST---------------------YGGNPLACK 148 (266)
Q Consensus 92 ~~~~~~~~~~~d~~~--~sK~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~ 148 (266)
...+..+ .+|+++ ..| ++|+ ..+|++..+++..+.+++...... -+.+.....
T Consensus 184 ~id~~~~--~~D~~~~s~~K-l~gp-~G~g~l~v~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~~~~~~ 259 (371)
T PF00266_consen 184 PIDLDEL--GADFLVFSSHK-LGGP-PGLGFLYVRPEAIERLRPAKPGGGYLDFPSLQEYGLADDARRFEGGTPNVPAIY 259 (371)
T ss_dssp S--TTTT--TESEEEEESTS-TTSS-STEEEEEEEHHHHHHHHTSSSSSSTTTHHHHHHHCHHSTTTGSSSSS--HHHHH
T ss_pred ccccccc--ccceeeecccc-cCCC-Cchhhheehhhhhhccccccccccccccccchhcccccccccccccceeeehhh
Confidence 2334444 456555 559 8876 678999999988887754321111 145666677
Q ss_pred HHHHHHHHHhh---ccHHHHHHHHHHHHHHHhhcccccCCC-c-ccEEecCccceeeEEEEeeCccchHHHHHHHHHHCC
Q psy6547 149 LAMTALDVILE---ENMIENAYKMGEIFRSELSSPANKSKA-S-FKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAG 223 (266)
Q Consensus 149 a~~~~l~~~~~---~~~~~~~~~~~~~l~~~l~~~~~~~~~-~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~g 223 (266)
+...+++.++. +.+.++..++.+++++.|.+ ++...+ . ......+. ++.+.++. .+..++.+.|.++|
T Consensus 260 ~l~~al~~~~~~g~~~i~~~~~~l~~~~~~~l~~-~~~~~~~~~~~~~~~~~---i~~~~~~~---~~~~~~~~~L~~~~ 332 (371)
T PF00266_consen 260 ALNEALKLLEEIGIERIRERIRELAEYLREALEE-LPGIEVLGPDDEPRRPS---IVSFNLPG---SDADDVVKYLEERG 332 (371)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTTEEESSSSCGGBGTT---EEEEEETT---SSHHHHHHHHHHHT
T ss_pred hHHHHHhhhhccccccchhhhhhHHHHHHhhhhc-CCceeEeeecccccccc---eEEEeecC---CCHHHHHHHHhhcC
Confidence 77788887744 45788889999999999988 654221 1 11233455 78888843 57899999999999
Q ss_pred ceeccC--C----------CCEEEEeccCCCCHHHHHHH
Q psy6547 224 LVTKPI--S----------NNIIRLSPALNITEQELREG 250 (266)
Q Consensus 224 i~~~~~--~----------~~~iR~~~~~~~t~~~i~~~ 250 (266)
|.++.+ . .+.+|+|++..+|++|+|++
T Consensus 333 I~~~~G~~~~~~~~~~~~~~~~iRvS~~~~nt~~dv~~l 371 (371)
T PF00266_consen 333 IAVSTGSACAGPSLDILGMGGVIRVSLHYYNTEEDVDRL 371 (371)
T ss_dssp EEEEESTTTCHHHHHHHHTTTEEEEE-GTTSSHHHHHHH
T ss_pred EEEeccCcccHHHHHHhCCCCEEEEeccCCCCHHHHhhC
Confidence 999874 2 28999999999999999975
No 243
>KOG1357|consensus
Probab=99.72 E-value=1.2e-16 Score=135.17 Aligned_cols=231 Identities=20% Similarity=0.239 Sum_probs=167.7
Q ss_pred ccCCCCCCceeecCCCHHHHHHHHhc---------C-C-CEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEe
Q psy6547 12 EFGPHMPGYNIIPYNDVDALEAKLKS---------N-P-NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIAD 80 (266)
Q Consensus 12 ~~~~~~~~v~~~~~~d~~~l~~~l~~---------~-~-~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~D 80 (266)
.....+..++.+.|||.++||++|++ + + +.-.|+++.++++.|.++ .+.++.+++++|..+++.|
T Consensus 237 GaRLSgAtiRVfkHNdm~~LEr~Lrd~I~~gqP~Thrp~kki~iivegiysmEg~iv----~Lp~vvalkkkykayl~lD 312 (519)
T KOG1357|consen 237 GARLSGATTRVFRHNDMQGLERLLRDAIVYGQPKTHRPWKKILICVEGIYSMEGTIV----DLPEVVALKKKYKAYLYLD 312 (519)
T ss_pred cccccCceEEEEecCCHHHHHHHHHHHHhcCCCCcCCcchheeeeeccceeccCeec----ccHHHHHhhccccEEEEee
Confidence 34677889999999999999999975 2 1 445677888999999998 9999999999999999999
Q ss_pred ccccC--cCCcCcccccccCCCCc---C--eeeecccccCCchhhhhheecHHhhhccCCCCCCCCC--CCcHHHHHHHH
Q psy6547 81 EVQTG--LGRTGKLLAIHYEDVRP---D--IVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTY--GGNPLACKLAM 151 (266)
Q Consensus 81 e~~~~--~~~~g~~~~~~~~~~~~---d--~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~a~~ 151 (266)
|+|+. .|.+|.. ....++.++ | +.+|.|.++++ .|++.+++++.+.++.......+ ..+|+.+....
T Consensus 313 EAHSiGA~g~tGrg-vce~~g~d~~dvDImMGtftKSfga~---GGyiagsk~lid~lrt~s~~~~yat~~sppvaqq~~ 388 (519)
T KOG1357|consen 313 EAHSIGAMGATGRG-VCEYFGVDPEDVDIMMGTFTKSFGAA---GGYIAGSKELIDYLRTPSPSALYATSLSPPVAQQIL 388 (519)
T ss_pred ccccccccCCCCcc-eeeccCCCchhheeecceehhhcccc---cceecCcHHHHhhhccCCCceeecccCChHHHHHHH
Confidence 99943 4455542 334445433 3 34488999855 67899999999998865444333 34566666667
Q ss_pred HHHHHHhh-------ccHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCc
Q psy6547 152 TALDVILE-------ENMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGL 224 (266)
Q Consensus 152 ~~l~~~~~-------~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi 224 (266)
.+++.+.- ++..+++.++..+++..+++ ++...... .++|++.+.+-. ......+.++|+++++
T Consensus 389 ssl~~i~G~dgt~~g~~k~~~l~~ns~yfr~~l~~-~gfivyG~------~dSpVvplll~~--~~k~~~f~r~~l~~ni 459 (519)
T KOG1357|consen 389 TSVKHIMGEDGTNRGRQKIERLAENSRYFRWELQK-MGFIVYGN------NDSPVVPLLLYG--PAKIVAFSREMLERNI 459 (519)
T ss_pred HHHHhhcCCCcccHHHHHHHHHHhhhHHHHHhhhc-CcEEEecC------CCCCcceeeecC--cccccHHHHHHHhcCc
Confidence 77777643 23677788899999999888 55322222 244555555433 2245678889998877
Q ss_pred eeccC-------CCCEEEEeccCCCCHHHHHHHHHHHHHHHH
Q psy6547 225 VTKPI-------SNNIIRLSPALNITEQELREGLDIIINTIN 259 (266)
Q Consensus 225 ~~~~~-------~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~ 259 (266)
.+... -....|+|.+..++.|+++++++.+.+.=+
T Consensus 460 gvVvvgfPatpl~e~r~R~c~Sa~ht~e~ld~~l~~i~~~g~ 501 (519)
T KOG1357|consen 460 GVVVVGFPATPLLESRARFCLSASHTKEDLDRALEVIDRVGD 501 (519)
T ss_pred eEEEEeCCCchHHHhHHHhhhcccccHHHHHHHHHHHhhhch
Confidence 65422 246789999999999999999999987643
No 244
>KOG0633|consensus
Probab=99.72 E-value=3.1e-16 Score=124.12 Aligned_cols=225 Identities=15% Similarity=0.147 Sum_probs=155.4
Q ss_pred CCCceeecCC-----CHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCc
Q psy6547 17 MPGYNIIPYN-----DVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGK 91 (266)
Q Consensus 17 ~~~v~~~~~~-----d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~ 91 (266)
..+|+-+|.+ +.+++.+.++.+..++.++++++.|++|.. +..+++++|.+.-. +.++|+||+|.+|...+.
T Consensus 132 d~eVvkvpl~pdF~lnvdai~evl~~ds~iK~~F~tSPgNPtg~~-ik~~di~KiLe~p~--nglVVvDEAYidFsg~~S 208 (375)
T KOG0633|consen 132 DAEVVKVPLNPDFSLNVDAIAEVLELDSKIKCIFLTSPGNPTGSI-IKEDDILKILEMPD--NGLVVVDEAYIDFSGVES 208 (375)
T ss_pred CceEEEecCCCCccccHHHHHHHHhccccceEEEEcCCCCCCccc-ccHHHHHHHHhCCC--CcEEEEeeeeEeeccccc
Confidence 4566666644 789999999777789999999999999988 78888888887764 799999999987743222
Q ss_pred ccccccCCCCcCeee---eccccc-CCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHH--Hh-hccHHH
Q psy6547 92 LLAIHYEDVRPDIVI---LGKALS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDV--IL-EENMIE 164 (266)
Q Consensus 92 ~~~~~~~~~~~d~~~---~sK~~~-~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~--~~-~~~~~~ 164 (266)
....-.--|++++ +||.+| +| +|+|+-..+.++.+.+.. .-..|..|..+..+++++++. +. .+..+.
T Consensus 209 --~~~lV~kYpNLivlqTlSKsfGLAG-iRvG~~~~~~~ia~iln~--~KaPYNiS~~~s~~AL~Als~~n~kkme~~rd 283 (375)
T KOG0633|consen 209 --RMKLVKKYPNLIVLQTLSKSFGLAG-IRVGYGAFPLSIAEILNR--AKAPYNISVAGSVAALAALSDSNGKKMEDVRD 283 (375)
T ss_pred --cchHhHhCCceeehhhhhhhcCcce-eEeecccccHHHHHHHHh--ccCCccccchhHHHHHHhcCcccchHHHHHHH
Confidence 1111112355554 999999 99 999999999998887764 334555556666667766652 11 145666
Q ss_pred HHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHH-HHCCceeccC-----CCCEEEEec
Q psy6547 165 NAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKM-KDAGLVTKPI-----SNNIIRLSP 238 (266)
Q Consensus 165 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l-~~~gi~~~~~-----~~~~iR~~~ 238 (266)
-+.+.+.++...|.+ +.. +.. . ..|.+++|+.+++...+..-++.+..++ .+.|++++.. ..+++|++
T Consensus 284 aiv~er~RL~keLt~-v~~--~~~-~-~gg~daNFiLi~v~~~~n~~akkly~q~at~~gVvVRfrgse~~c~G~lRit- 357 (375)
T KOG0633|consen 284 AIVRERERLFKELTE-VPF--LND-Y-PGGSDANFILIEVTGGDNGMAKKLYKQDATKMGVVVRFRGSEEGCKGYLRIT- 357 (375)
T ss_pred HHHHHHHHHHHHhhc-Ccc--ccC-C-CCcccccEEEEEEcCCCcHHHHHHHHHHHHhcceEEEEcCCccccceeEEEE-
Confidence 666667777777776 432 111 1 2244455888888753322344455554 5889999853 45899999
Q ss_pred cCCCCHHHHHHHHHHHHHH
Q psy6547 239 ALNITEQELREGLDIIINT 257 (266)
Q Consensus 239 ~~~~t~~~i~~~~~~l~~~ 257 (266)
..|+|+-+-+++.|+.+
T Consensus 358 --vGt~EentvL~k~~K~~ 374 (375)
T KOG0633|consen 358 --VGTPEENTVLMKCLKQF 374 (375)
T ss_pred --cCCcccchHHHHHHHhh
Confidence 45777888888888765
No 245
>cd00378 SHMT Serine-glycine hydroxymethyltransferase (SHMT). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). SHMT carries out interconversion of serine and glycine; it catalyzes the transfer of hydroxymethyl group of N5, N10-methylene tetrahydrofolate to glycine resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers; the mammalian enzyme forms a homotetramer comprising four pyridoxal phosphate-bound active sites.
Probab=99.72 E-value=3.4e-16 Score=137.78 Aligned_cols=217 Identities=16% Similarity=0.131 Sum_probs=140.5
Q ss_pred CHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccc-cCcCCcCc-ccccccCCCCcCe
Q psy6547 27 DVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQ-TGLGRTGK-LLAIHYEDVRPDI 104 (266)
Q Consensus 27 d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~-~~~~~~g~-~~~~~~~~~~~d~ 104 (266)
|++++++.+.+. +++++++++..+ |... ++++|.++|+++|+++|+|++| .|+...|. ..... +.+.-+
T Consensus 149 d~~~l~~~i~~~-~~~~v~~~~~~~--~~~~----~~~~I~~l~~~~~~~li~D~a~~~g~~~~g~~~~~~~--~~dv~~ 219 (402)
T cd00378 149 DYDALEKMALEF-KPKLIVAGASAY--PRPI----DFKRFREIADEVGAYLLVDMAHVAGLVAGGVFPNPLP--GADVVT 219 (402)
T ss_pred CHHHHHHHHHhC-CCCEEEecCccc--CCCc----CHHHHHHHHHhcCCEEEEEccchhhhhhcccCCCccc--CCcEEE
Confidence 799999998533 567777655432 3333 7999999999999999999997 44422232 11122 333333
Q ss_pred eeecccccCCchhhhhheecH-HhhhccCCCCCCCCCCC-cHHHHHHHHHHHHHHhh---ccHHHHHHHHHHHHHHHhhc
Q psy6547 105 VILGKALSGGLYPISAVLADD-EVMGTLVPGTHGSTYGG-NPLACKLAMTALDVILE---ENMIENAYKMGEIFRSELSS 179 (266)
Q Consensus 105 ~~~sK~~~~g~~~~g~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~a~~~~l~~~~~---~~~~~~~~~~~~~l~~~l~~ 179 (266)
.++||++ +| +++|++++++ ++.+.+........++. ......++..++..... ++..++++++++++.+.|.+
T Consensus 220 ~s~sK~l-~G-~~gg~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~ 297 (402)
T cd00378 220 TTTHKTL-RG-PRGGLILTRKGELAKKINSAVFPGLQGGPHLHVIAAKAVALKEALEPEFKAYAKQVVENAKALAEALKE 297 (402)
T ss_pred eccccCC-CC-CCceEEEeccHHHHHHHHHHhCccccCCchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4589999 66 7899998876 77776653322222222 22233333334443322 45677888899999999887
Q ss_pred ccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccC----------CCCEEEEeccC----CCCHH
Q psy6547 180 PANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPI----------SNNIIRLSPAL----NITEQ 245 (266)
Q Consensus 180 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~----------~~~~iR~~~~~----~~t~~ 245 (266)
.+...+.. ...+. ++|+.++.. +.+...+.+.|.++||.+.+. ..+++|++++. .++++
T Consensus 298 -~g~~~~~~--~~~~~---~v~v~~~~~-~~~~~~~~~~l~~~gI~v~~~~~p~~~~~~~~~~~lRi~~~~~~~~~~~~~ 370 (402)
T cd00378 298 -RGFKVVSG--GTDNH---LVLVDLRPK-GITGKAAEDALEEAGITVNKNTLPWDPSSPFVPSGIRIGTPAMTTRGMGEE 370 (402)
T ss_pred -CCCeEeec--CCCCe---EEEEeCCcc-CCCHHHHHHHHHHcCcEEcCCcCCCCCCCCCCCCeeEecCHHHHHhCCCHH
Confidence 44322211 12345 888888642 234567778888999999631 34689999865 35799
Q ss_pred HHHHHHHHHHHHHHHH
Q psy6547 246 ELREGLDIIINTINTM 261 (266)
Q Consensus 246 ~i~~~~~~l~~~~~~~ 261 (266)
|++++++.|.+++++-
T Consensus 371 di~~~~~~l~~~~~~~ 386 (402)
T cd00378 371 EMEEIADFIARALKDA 386 (402)
T ss_pred HHHHHHHHHHHHHhcc
Confidence 9999999999987653
No 246
>PRK13034 serine hydroxymethyltransferase; Reviewed
Probab=99.72 E-value=1.6e-15 Score=133.76 Aligned_cols=216 Identities=14% Similarity=0.124 Sum_probs=138.8
Q ss_pred CCHHHHHHHHhcCCCEEEEEEc-cccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCccccccc-CCCCcC
Q psy6547 26 NDVDALEAKLKSNPNICAFMVE-PIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHY-EDVRPD 103 (266)
Q Consensus 26 ~d~~~l~~~l~~~~~~~~i~~~-~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~~~~~-~~~~~d 103 (266)
.|++++++.+++. ++++|+++ +++ |... ++++|.++|++||+++++|++|+ +|..+.+..... .+.+.-
T Consensus 155 ~d~~~le~~l~~~-~~klVi~~~~~~---g~~~----dl~~l~~la~~~g~~livD~Aha-~G~~~~g~~~~~~~~~Di~ 225 (416)
T PRK13034 155 IDYDEVEELAKEH-KPKLIIAGFSAY---PREL----DFARFREIADEVGALLMVDMAHI-AGLVAAGEHPNPFPHAHVV 225 (416)
T ss_pred cCHHHHHHHHhhc-CCeEEEECCCcc---cccc----CHHHHHHHHHHcCCEEEEeCccc-ccCcccCCCCCCCCCceEE
Confidence 6899999998543 46888874 333 3443 88999999999999999999993 333322211111 122333
Q ss_pred eeeecccccCCchhhhhheecHH-hhhccCCCCCCCCC--CCcHHHHHH-HHHHHHHHhh--ccHHHHHHHHHHHHHHHh
Q psy6547 104 IVILGKALSGGLYPISAVLADDE-VMGTLVPGTHGSTY--GGNPLACKL-AMTALDVILE--ENMIENAYKMGEIFRSEL 177 (266)
Q Consensus 104 ~~~~sK~~~~g~~~~g~~~~~~~-~~~~~~~~~~~~~~--~~~~~~~~a-~~~~l~~~~~--~~~~~~~~~~~~~l~~~l 177 (266)
+.+++|+++|+ . .|+++++.+ +.+.++.. .+.++ +..+...++ +.+.++.++. .++.+++.++.++++++|
T Consensus 226 ~~s~~K~l~g~-~-GG~v~~~~~~~~~~~~~~-~~~~~~~~~~~~~~aa~~~al~~~~~~~~~~~~~~l~~~a~~l~~~L 302 (416)
T PRK13034 226 TTTTHKTLRGP-R-GGMILTNDEEIAKKINSA-VFPGLQGGPLMHVIAAKAVAFGEALQPEFKTYAKQVIANAQALAEVL 302 (416)
T ss_pred EEeCcccCCCC-C-CeEEEECcHHHHHHHHhh-cCCcccCCccHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHH
Confidence 34478999755 2 566666554 33434332 22111 122223333 3344444322 346899999999999999
Q ss_pred hcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceecc----------CCCCEEEEeccC----CCC
Q psy6547 178 SSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKP----------ISNNIIRLSPAL----NIT 243 (266)
Q Consensus 178 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~----------~~~~~iR~~~~~----~~t 243 (266)
++ ++..... + +.++|++.+.+.+. +.+...+.++|.++||.+.+ .....+|++++. .++
T Consensus 303 ~~-~G~~~~~----~-~~~t~i~~v~~~~~-~~~~~~~~~~L~~~GI~v~~~~~p~~~~~p~~~~~lR~~~~~~t~~~~~ 375 (416)
T PRK13034 303 KE-RGYDLVS----G-GTDNHLLLVDLRPK-GLSGKDAEQALERAGITVNKNTVPGDTESPFVTSGIRIGTPAGTTRGFG 375 (416)
T ss_pred HH-cCCEecc----C-CCCCcEEEEEcCCC-CCCHHHHHHHHHhCCcEEeccCCCCCCcCCCCCCeeEeCcHHHHhCCCC
Confidence 87 5432221 1 22456888887652 23567777889999999874 234679999887 888
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy6547 244 EQELREGLDIIINTINT 260 (266)
Q Consensus 244 ~~~i~~~~~~l~~~~~~ 260 (266)
++|++++++.|.+.+.+
T Consensus 376 ~~di~~l~~~l~~~~~~ 392 (416)
T PRK13034 376 EAEFREIANWILDVLDD 392 (416)
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 99999999999988774
No 247
>KOG1368|consensus
Probab=99.72 E-value=1.1e-16 Score=128.73 Aligned_cols=221 Identities=14% Similarity=0.179 Sum_probs=161.2
Q ss_pred CHHHHHHHHhc------CCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCcccccccCCC
Q psy6547 27 DVDALEAKLKS------NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDV 100 (266)
Q Consensus 27 d~~~l~~~l~~------~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~~~~~~~~ 100 (266)
|++++|+.+.- .+.+++|.+|..+++.|..++|.+++.++.++|++||+.+.+|.+...-.-....-+.+.+.-
T Consensus 135 ~ledIe~~ir~~~GD~H~p~T~LIclENT~~~~Gg~vlPle~~~~v~~lak~~glkLH~DGARi~NAavasgV~vk~i~~ 214 (384)
T KOG1368|consen 135 DLEDIEAAIRVPKGDCHMPPTKLICLENTHNNCGGKVLPLEELDRVKALAKRHGLKLHMDGARIFNAAVASGVPVKKICS 214 (384)
T ss_pred eHHHHHHhhcCCCCCccCCCceEEEeeccccccCceEeeHHHHHHHHHHHhccCCeeecchhhhhhHHHHcCCCHHHHHH
Confidence 69999999963 236899999999988887779999999999999999999999977621100111112222222
Q ss_pred CcC--eeeecccccCCchhhhhheecHHhhhccCCC--CCCCCCCCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHH
Q psy6547 101 RPD--IVILGKALSGGLYPISAVLADDEVMGTLVPG--THGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSE 176 (266)
Q Consensus 101 ~~d--~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~ 176 (266)
..| -+++||++++++ .+.++++++++++.+.. ..++.+..+.+.+++++.+|+.-. ..+++-.+++..+.+.
T Consensus 215 ~fDSVsiCLSKglgAPV--GSViVG~k~FI~kA~~~RKalGGGmRQsGvLaaaaLval~~~~--~~L~~dHk~A~~lAe~ 290 (384)
T KOG1368|consen 215 AFDSVSICLSKGLGAPV--GSVIVGSKDFIDKARHFRKALGGGMRQSGVLAAAALVALDENV--PLLRADHKRAKELAEY 290 (384)
T ss_pred hhhhhhhhhhccCCCCc--ccEEEccHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHhhcch--HHHHHHHHHHHHHHHH
Confidence 333 345999999652 34567898888776532 456667778888899988886422 2566666777777777
Q ss_pred hhcccccCCCcccEE-ecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccCCCCEEEEeccCCCCHHHHHHHHHHHH
Q psy6547 177 LSSPANKSKASFKLS-SGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIII 255 (266)
Q Consensus 177 l~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~iR~~~~~~~t~~~i~~~~~~l~ 255 (266)
+.. .+. ++.++. ...+ |+.+.+..+ ..+++++++.+.++||.+.++....+|+.++...|+++++.....++
T Consensus 291 ~~~-~~~--i~v~v~a~etN---iv~~~l~q~-~~~~~~l~~~~~k~gi~lm~~~s~r~Rivlh~Qvt~~~ve~~~~~~~ 363 (384)
T KOG1368|consen 291 INT-PEE--IRVEVPAVETN---IVNMVLCQA-RLTAEELCKFLEKNGILLMGGASRRIRIVLHHQVTDEDVEYVKSVLS 363 (384)
T ss_pred hcc-ccc--eeeecchhhcc---eeeeecccc-cCCHHHHHHHHHHCCeEEeeccccceEEEEEEecCHHHHHHHHHHHH
Confidence 775 432 222122 2344 888887653 56899999999999999999888899999999999999999999996
Q ss_pred HHH
Q psy6547 256 NTI 258 (266)
Q Consensus 256 ~~~ 258 (266)
+.+
T Consensus 364 k~~ 366 (384)
T KOG1368|consen 364 KKF 366 (384)
T ss_pred HHH
Confidence 543
No 248
>PRK13238 tnaA tryptophanase/L-cysteine desulfhydrase, PLP-dependent; Provisional
Probab=99.71 E-value=1.1e-15 Score=135.94 Aligned_cols=226 Identities=14% Similarity=0.108 Sum_probs=147.1
Q ss_pred CCHHHHHHHHhcC--CCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccC----cCCc---Cc-cccc
Q psy6547 26 NDVDALEAKLKSN--PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTG----LGRT---GK-LLAI 95 (266)
Q Consensus 26 ~d~~~l~~~l~~~--~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~----~~~~---g~-~~~~ 95 (266)
.|+++|++.+.+. +++++|+++.++|++|..+++.+.+++|+++|++||++||+|+++.. |... |. ....
T Consensus 161 id~e~Le~~i~~~~~~~tk~Ivl~~p~NptGG~v~s~~~l~~I~~ia~~~gi~li~Daa~~~e~a~f~~~~e~g~~~~si 240 (460)
T PRK13238 161 FDLEKLEALIEEVGAENVPFIVMTITNNSAGGQPVSMANLRAVYEIAKKYGIPVVIDAARFAENAYFIKQREPGYKDKSI 240 (460)
T ss_pred cCHHHHHHHHhhcCCCceeEEEEecCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEECcchhhhhhhhhhccccccCCCH
Confidence 4799999999543 36999999999888876668999999999999999999999998731 2110 10 0010
Q ss_pred cc----CCCCcCeeeec--ccccCCchhhhhheec-HHhhhccCCCC----CCCCCCCcHHH-HHHHHHHHHHHhhccHH
Q psy6547 96 HY----EDVRPDIVILG--KALSGGLYPISAVLAD-DEVMGTLVPGT----HGSTYGGNPLA-CKLAMTALDVILEENMI 163 (266)
Q Consensus 96 ~~----~~~~~d~~~~s--K~~~~g~~~~g~~~~~-~~~~~~~~~~~----~~~~~~~~~~~-~~a~~~~l~~~~~~~~~ 163 (266)
.. .+-..|..++| |...++ . .|+++.+ +++.+.++... ...++++.+.. +.|+..+|+....+++.
T Consensus 241 ~~i~~~~~s~~D~~~~Sg~K~g~~~-~-GG~i~~~d~~l~~~~~~~~~~~~g~~t~~g~~~~~~~Ala~~l~e~~~~~~~ 318 (460)
T PRK13238 241 KEIAREMFSYADGLTMSAKKDAMVN-I-GGLLCFRDEDLFTECRTLCILYEGFPTYGGLAGRDMEALAVGLYEGMDEDYL 318 (460)
T ss_pred HHHhhhhcccCcEEEEecccCCCCc-c-eeEEEcChHHHHHHhhhcccccCCcccccCcHHHHHHHHHhhHHHhhChHHH
Confidence 00 01124454444 322222 1 3455555 57777776542 23467665555 56666667654455666
Q ss_pred HHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCc------cchHHHHHHHHH-HCCceeccCC------
Q psy6547 164 ENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSA------ILEVYDVCIKMK-DAGLVTKPIS------ 230 (266)
Q Consensus 164 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~------~~~~~~~~~~l~-~~gi~~~~~~------ 230 (266)
+...++++++.+.|++ .+.+.+ .+..|. ++.+++..-. +....+++.+|. +.||.+.|.+
T Consensus 319 ~~~~~~~~~l~~~L~~-~G~~~~---~p~Gg~---~v~~d~~~~~~~~~~~~~~~~~~a~~L~~e~GV~~~~~~~f~~~~ 391 (460)
T PRK13238 319 AYRIGQVEYLGEGLEE-AGVPIQ---TPAGGH---AVFVDAGKFLPHIPAEQFPAQALACELYLEAGIRGVEIGSLLLGR 391 (460)
T ss_pred HHHHHHHHHHHHHHHH-CCCCeE---ccCCce---EEEEEchhcCCCCCCCCCchHHHHHHHHHHcCeeeecccceeccc
Confidence 6666678899999987 543322 234456 6666664310 123577888876 6699887642
Q ss_pred -----------CCEEEEeccC-CCCHHHHHHHHHHHHHHHHH
Q psy6547 231 -----------NNIIRLSPAL-NITEQELREGLDIIINTINT 260 (266)
Q Consensus 231 -----------~~~iR~~~~~-~~t~~~i~~~~~~l~~~~~~ 260 (266)
.+.+|++.+- ..|.++++.+.++|.+..++
T Consensus 392 ~~~~~~~~~~~~~~~Rla~~rr~~~~~~~~~~~~~l~~~~~~ 433 (460)
T PRK13238 392 DPKTGEQLPAPAELLRLAIPRRVYTQSHMDYVAEALKAVKEN 433 (460)
T ss_pred CCCCccccCCccceEEEecccccCCHHHHHHHHHHHHHHHHh
Confidence 3789999763 44899999999999987654
No 249
>PLN02368 alanine transaminase
Probab=99.70 E-value=6.8e-17 Score=141.69 Aligned_cols=172 Identities=11% Similarity=0.062 Sum_probs=121.2
Q ss_pred CCcCcccccCCCCCCceeecC-------CCHHHHHHHHhcC----CCEEEEEEccccCCCCcccCChHHHHHHHHHHHhc
Q psy6547 5 TDPTSYNEFGPHMPGYNIIPY-------NDVDALEAKLKSN----PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQY 73 (266)
Q Consensus 5 ~~~~~~~~~~~~~~~v~~~~~-------~d~~~l~~~l~~~----~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~ 73 (266)
.+|.+...+...+.+++.++. .|+++|++.++.. .++++++++.++|++|.+ ++.+.+++|.++|++|
T Consensus 164 ~Y~~y~~~~~~~g~~~v~v~~~~~~~~~~d~~~le~~i~~~~~~~~~~k~l~l~nP~NPTG~v-~s~e~l~~l~~~a~~~ 242 (407)
T PLN02368 164 QYPLYSATISLLGGTLVPYYLEESENWGLDVNNLRQSVAQARSKGITVRAMVIINPGNPTGQC-LSEANLREILKFCYQE 242 (407)
T ss_pred CCccHHHHHHHcCCEEEEEecccccCCCCCHHHHHHHHHHHhhcCCCeEEEEEECCCCCCCcc-CCHHHHHHHHHHHHHc
Confidence 344444445556777777753 3689999988531 257877766668889977 8999999999999999
Q ss_pred CCEEEEeccccCcCCcCc-cc-ccc----c-------CCCCcCeeeecccc-c-CCchhhhhhe---ecHHhhhccCCCC
Q psy6547 74 NVLFIADEVQTGLGRTGK-LL-AIH----Y-------EDVRPDIVILGKAL-S-GGLYPISAVL---ADDEVMGTLVPGT 135 (266)
Q Consensus 74 g~~li~De~~~~~~~~g~-~~-~~~----~-------~~~~~d~~~~sK~~-~-~g~~~~g~~~---~~~~~~~~~~~~~ 135 (266)
|++||+||+|..+...+. .+ +.. . .+....+.+|||++ + +| ||+||++ +++++++.+....
T Consensus 243 ~~~II~DE~Y~~l~y~~~~~~~s~~~~~~~~~~~~~~~~~vI~~~SfSK~~~~~~G-lRiGy~i~~~~~~~li~~~~~~~ 321 (407)
T PLN02368 243 RLVLLGDEVYQQNIYQDERPFISAKKVLMDMGPPISKEVQLVSFHTVSKGYWGECG-QRGGYFEMTNIPPKTVEEIYKVA 321 (407)
T ss_pred CCEEEEEccccccccCCCCCcccHHHHHhhhcccccccceEEEEecCCcccccCCc-cceEEEEEeCCCHHHHHHHHHHh
Confidence 999999999987643332 11 111 0 11223334499998 5 89 9999998 4778887776542
Q ss_pred CCCCCCCcHHHHHHHHHHHHHH-----------hh-ccHHHHHHHHHHHHHHHhhc
Q psy6547 136 HGSTYGGNPLACKLAMTALDVI-----------LE-ENMIENAYKMGEIFRSELSS 179 (266)
Q Consensus 136 ~~~~~~~~~~~~~a~~~~l~~~-----------~~-~~~~~~~~~~~~~l~~~l~~ 179 (266)
..+++.+.+++.++.++++.- +. .++.+.++++++.+.+.|.+
T Consensus 322 -~~~~~~~~~~Q~aa~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~rr~~~~~~L~~ 376 (407)
T PLN02368 322 -SIALSPNVSGQIFMGLMVNPPKPGDISYDQFVRESKGILESLRRRARMMTDGFNS 376 (407)
T ss_pred -cccCCCCcHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 345677888999888888521 11 23567778888888899888
No 250
>COG3977 Alanine-alpha-ketoisovalerate (or valine-pyruvate) aminotransferase [Amino acid transport and metabolism]
Probab=99.70 E-value=2e-15 Score=121.74 Aligned_cols=223 Identities=14% Similarity=0.140 Sum_probs=150.3
Q ss_pred CHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCcccccccCCCCcCe--
Q psy6547 27 DVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDI-- 104 (266)
Q Consensus 27 d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~~~~~~~~~~d~-- 104 (266)
|.++|+ + .+++.+|.+.-+.|++|.+ ++.+.+.+|-++|++||++++.|.+|. .-..+..|.-...--.+++
T Consensus 170 DF~~l~--i--~e~~g~ic~SRPtNPTGNV-lTdeE~~kldalA~~~giPliIDnAYg-~PFP~iifsd~~~~w~~Niil 243 (417)
T COG3977 170 DFEHLH--I--GESTGAICVSRPTNPTGNV-LTDEELAKLDALARQHGIPLIIDNAYG-VPFPGIIFSDATPLWNENIIL 243 (417)
T ss_pred CHHHcc--c--ccccceEEecCCCCCCCCc-ccHHHHHHHHHHhhhcCCcEEEecccC-CCCCceecccccccCCCCEEE
Confidence 555544 3 4578999999999999988 899999999999999999999999993 3222332221111112333
Q ss_pred -eeecccccCCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHhh----cc-HHHHHHHHHHHHHHHhh
Q psy6547 105 -VILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILE----EN-MIENAYKMGEIFRSELS 178 (266)
Q Consensus 105 -~~~sK~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~----~~-~~~~~~~~~~~l~~~l~ 178 (266)
.++||.=-+| .|.|.+++++++++.+.+.....+..++..+.+.+...++.-.- ++ ++--+++..+.....|+
T Consensus 244 C~SLSK~GLPG-~R~GIiIane~viqaitnmn~iisLap~~~G~Aia~~mie~gdl~rlseqVIrPFY~~~~q~~~~~l~ 322 (417)
T COG3977 244 CMSLSKLGLPG-SRCGIIIANEKVIQAITNMNGIISLAPGRMGPAIAAEMIESGDLLRLSEQVIRPFYRNRVQTTIAILR 322 (417)
T ss_pred EeehhhcCCCC-cceeEEEccHHHHHHHHhccceeeecCCCccHHHHHHHhhcchHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 3377754477 89999999999999988766666666666777766655532111 11 11112333334444455
Q ss_pred cccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccC-------------CCCEEEEeccCCCCHH
Q psy6547 179 SPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPI-------------SNNIIRLSPALNITEQ 245 (266)
Q Consensus 179 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~-------------~~~~iR~~~~~~~t~~ 245 (266)
+.+++..... -++.|. +|.+...++-....+++.++|+++|+++.|+ ..+++|++ +..+++
T Consensus 323 ~~lp~~~~~i-HkpEGA---IFlWLWf~dLPItt~~LYq~LKa~Gvl~VPG~~FFpGl~~ewpH~hqC~Rmn--~~~~~~ 396 (417)
T COG3977 323 RYLPEYRCLI-HKPEGA---IFLWLWFKDLPITTEELYQRLKARGVLMVPGHYFFPGLDKEWPHTHQCMRMN--YVPEPE 396 (417)
T ss_pred HhcCccceee-ecCCcc---eeehhhhccCCCCHHHHHHHHHhCeEEEecccccCCCCCCCCCCccceEEEe--cCCCHH
Confidence 4444433333 345565 5554444433457899999999999999886 23789999 888999
Q ss_pred HHHHHHHHHHHHHHHHh
Q psy6547 246 ELREGLDIIINTINTMA 262 (266)
Q Consensus 246 ~i~~~~~~l~~~~~~~~ 262 (266)
.+++.+++|.+.+++.-
T Consensus 397 ~ie~Gva~lae~ve~~y 413 (417)
T COG3977 397 KIEKGVAILAEEVERAY 413 (417)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999887753
No 251
>PLN02242 methionine gamma-lyase
Probab=99.70 E-value=2.3e-16 Score=138.73 Aligned_cols=224 Identities=11% Similarity=0.068 Sum_probs=146.2
Q ss_pred CCCCceeecCCCHHHHHHHHhcCC-CEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCcccc
Q psy6547 16 HMPGYNIIPYNDVDALEAKLKSNP-NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLA 94 (266)
Q Consensus 16 ~~~~v~~~~~~d~~~l~~~l~~~~-~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~~ 94 (266)
.+.++++++..|++++++++ ++ ++++|+++.++|++|.+. ++++|+++|+++|+++|+||+|+.+. .+
T Consensus 140 ~G~~~~~~d~~d~e~l~~~i--~~~~tklV~lesp~NPtG~v~----dl~~I~~la~~~gi~livDea~~~~~-~~---- 208 (418)
T PLN02242 140 CNITTTFVDITDLEAVKKAV--VPGKTKVLYFESISNPTLTVA----DIPELARIAHEKGVTVVVDNTFAPMV-LS---- 208 (418)
T ss_pred cCceEEEcCCCCHHHHHHhc--CcCCCEEEEEecCCCCCCccc----CHHHHHHHHHHhCCEEEEECCCCccC-CC----
Confidence 56777888888999999999 44 489999999999999886 89999999999999999999996442 11
Q ss_pred cccCCCCcCeeeeccccc-CCchh-hhhheecHHhhhccCCCCCC--CCCCCcHHHHHHHHHHHHHHhh-ccHHHHHHHH
Q psy6547 95 IHYEDVRPDIVILGKALS-GGLYP-ISAVLADDEVMGTLVPGTHG--STYGGNPLACKLAMTALDVILE-ENMIENAYKM 169 (266)
Q Consensus 95 ~~~~~~~~d~~~~sK~~~-~g~~~-~g~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~a~~~~l~~~~~-~~~~~~~~~~ 169 (266)
...++.+..+.++||.++ +| ++ .||+++++++++.+...... ..++.....+.++..++. +.. +...++..++
T Consensus 209 ~~~~g~divv~S~SK~l~g~g-~~~gG~iv~~~~li~~l~~~~~~~~~~~g~~~~~~~A~l~~~~-l~tl~~r~~~~~~~ 286 (418)
T PLN02242 209 PARLGADVVVHSISKFISGGA-DIIAGAVCGPAELVNSMMDLHHGALMLLGPTMNPKVAFELSER-LPHLSLRMKEHCRR 286 (418)
T ss_pred HHHcCCcEEEEeCccccCCCC-CceEEEEEcCHHHHHHHHHHhhhhhhccCCCCCHHHHHHHHcC-CCcHHHHHHHHHHH
Confidence 112355555666999998 45 56 58899998888777644332 122223323333333322 111 2345677788
Q ss_pred HHHHHHHhhccccc----CCCccc---------E---EecCccceeeEEEEeeCccchHHHHHHHHHHC----CceeccC
Q psy6547 170 GEIFRSELSSPANK----SKASFK---------L---SSGGLKKSINTLILSVSAILEVYDVCIKMKDA----GLVTKPI 229 (266)
Q Consensus 170 ~~~l~~~l~~~~~~----~~~~~~---------~---~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~----gi~~~~~ 229 (266)
++++.+.|++ .+. +.+... . .+.|. +++|++.. ...+..|++.|.-- .+.+..+
T Consensus 287 a~~la~~L~~-~~~~V~yP~l~~~p~~~~~~~~~~~~~g~g~---~~sf~l~~--~~~~~~f~~~l~~~~~~~~~~~slG 360 (418)
T PLN02242 287 AMEYAKRMKE-LGLKVIYPGLEDHPQHALLKSMANKGYGFGG---LLCLDMDT--EERANRLMRYLQNSTQFGFMAVSLG 360 (418)
T ss_pred HHHHHHHHHh-CCCEEECCCCCCCccHHHHHHhcccCCCcee---EEEEEECC--HHHHHHHHHHhhcccccceeeecCC
Confidence 8888888887 442 111110 1 24566 89999964 44577788877611 1111111
Q ss_pred ---------------------------CCCEEEEeccCCCCHHHHHHHHHHHHHHHHHH
Q psy6547 230 ---------------------------SNNIIRLSPALNITEQELREGLDIIINTINTM 261 (266)
Q Consensus 230 ---------------------------~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~ 261 (266)
..+.+|+|+.+.. +.+.+++.|+++++.+
T Consensus 361 ~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~liRlsvGlE~---~~~dli~dl~~al~~~ 416 (418)
T PLN02242 361 YYETLMSCSGSSTSSELDPEEKAAAGISPGLVRMSVGYTG---TLEQRWSQFEKALSAM 416 (418)
T ss_pred CCCceeeCCCccccccCCHHHHHhcCCCCCeEEEEecCCC---CHHHHHHHHHHHHHHh
Confidence 1368999955442 2566778888877765
No 252
>TIGR02006 IscS cysteine desulfurase IscS. This model represents IscS, one of several cysteine desulfurases from a larger protein family designated (misleadingly, in this case) class V aminotransferases. IscS is one of at least 6 enzymes characteristic of the IscSUA-hscAB-fsx system of iron-sulfur cluster assembly. Scoring almost as well as proteobacterial sequences included in the model are mitochondrial cysteine desulfurases, apparently from an analogous system in eukaryotes. The sulfur, taken from cysteine, may be used in other systems as well, such as tRNA base modification and biosynthesis of other cofactors.
Probab=99.70 E-value=2.9e-15 Score=131.87 Aligned_cols=224 Identities=13% Similarity=0.150 Sum_probs=147.5
Q ss_pred CCCCceeecCC-----CHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcC
Q psy6547 16 HMPGYNIIPYN-----DVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTG 90 (266)
Q Consensus 16 ~~~~v~~~~~~-----d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g 90 (266)
.+.+++.++.+ |++++++.+ .+++++++++.++|++|.+. ++++|.++|+++|+++++|++++ ++.
T Consensus 115 ~g~~v~~v~~~~~~~~d~~~l~~~l--~~~~~lv~v~~~~n~tG~~~----~~~~I~~l~~~~g~~livD~a~a-~g~-- 185 (402)
T TIGR02006 115 EGFEVTYLPPKSNGLIDLEELKAAI--RDDTILVSIMHVNNEIGVIQ----DIAAIGEICRERKVFFHVDAAQS-VGK-- 185 (402)
T ss_pred cCCEEEEEccCCCCcCCHHHHHHhc--CCCCEEEEEECCCcCceecc----cHHHHHHHHHHcCCEEEEEcchh-cCC--
Confidence 35667777653 799999998 34678999999999999886 89999999999999999999994 322
Q ss_pred cccccccCCCCcCeeeec--ccccCCchhhhhheecHHhhhccCCCCC-------CCCCCCcHHHHHHHHHHHHHHhh--
Q psy6547 91 KLLAIHYEDVRPDIVILG--KALSGGLYPISAVLADDEVMGTLVPGTH-------GSTYGGNPLACKLAMTALDVILE-- 159 (266)
Q Consensus 91 ~~~~~~~~~~~~d~~~~s--K~~~~g~~~~g~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~a~~~~l~~~~~-- 159 (266)
.+ ++..+..+|++++| |.+++ ...|+++.+++....+.+... ....+.+.....+...+++.+..
T Consensus 186 ~~--~~~~~~~~D~~~~s~~K~~gp--~G~G~l~~~~~~~~~~~~~~~g~~~~~~~~~gt~~~~~~~al~~al~~~~~~~ 261 (402)
T TIGR02006 186 IP--INVNELKVDLMSISGHKIYGP--KGIGALYVRRKPRVRLEALIHGGGHERGMRSGTLPTHQIVGMGEAFRIAKEEM 261 (402)
T ss_pred cc--cCccccCCCEEEEehhhhcCC--CceEEEEEccCCCCCCCceecCCCccCCccCCCccHHHHHHHHHHHHHHHHhH
Confidence 12 22234567788877 97763 348888877654444333211 12234555566666677776654
Q ss_pred ccHHHHHHHHHHHHHHHhhcccccC-CCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccC---------
Q psy6547 160 ENMIENAYKMGEIFRSELSSPANKS-KASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPI--------- 229 (266)
Q Consensus 160 ~~~~~~~~~~~~~l~~~l~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~--------- 229 (266)
+...++.+++++++++.|++ +... ........... .+.+.+.. .+.+++...| +++.++.+
T Consensus 262 ~~~~~~~~~l~~~l~~~l~~-~~~v~~~~~~~~~~p~---~~~v~f~~---~~~~~~~~~l--~~i~v~~G~~c~~~~~~ 332 (402)
T TIGR02006 262 AQDTAHVLALRDRLLNGIKS-IEEVYLNGDLEHRVPG---NLNVSFNY---VEGESLIMAL--KDLAVSSGSACTSASLE 332 (402)
T ss_pred HHHHHHHHHHHHHHHHHHhc-CCCEEEeCCccccCCC---eEEEEEeC---cCHHHHHHhc--CCEEEechhhcCCCCCC
Confidence 34667888888888888877 4321 11110001111 22333332 2345565555 35554321
Q ss_pred --------------CCCEEEEeccCCCCHHHHHHHHHHHHHHHHHH
Q psy6547 230 --------------SNNIIRLSPALNITEQELREGLDIIINTINTM 261 (266)
Q Consensus 230 --------------~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~ 261 (266)
..+.+|+|++..+|++|+|++++.|+++++.+
T Consensus 333 ~~~~l~~lg~~~~~~~~~vR~S~~~~~t~edid~l~~~l~~~~~~~ 378 (402)
T TIGR02006 333 PSYVLRALGINDELAHSSIRFTIGRFTTEEEIDYAVKLVKSAIDKL 378 (402)
T ss_pred ccHHHHHcCCChhhcCceEEEEecCCCCHHHHHHHHHHHHHHHHHH
Confidence 13789999999999999999999999988764
No 253
>cd06450 DOPA_deC_like DOPA decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine.
Probab=99.70 E-value=8e-16 Score=132.63 Aligned_cols=210 Identities=17% Similarity=0.088 Sum_probs=136.8
Q ss_pred CCCceeec-----CCCHHHHHHHHhc----CCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcC
Q psy6547 17 MPGYNIIP-----YNDVDALEAKLKS----NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLG 87 (266)
Q Consensus 17 ~~~v~~~~-----~~d~~~l~~~l~~----~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~ 87 (266)
+.+++.++ ..|+++|++.+++ ..++++++++..++++|.+. ++++|.++|+++|+++++|++|+++.
T Consensus 116 g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~~~~~~v~~~~~~~~tG~~~----~~~~i~~~~~~~~~~l~vD~a~~~~~ 191 (345)
T cd06450 116 DVKVRLVPVDEDGRMDPEALEAAIDEDKAEGLNPIMVVATAGTTDTGAID----PLEEIADLAEKYDLWLHVDAAYGGFL 191 (345)
T ss_pred hcCeEEeeeCCCCCcCHHHHHHHHHHHHHCCCCcEEEEEecccCCCCCCC----CHHHHHHHHHHhCCeEEEechhhHHH
Confidence 56677776 2479999999954 11567777777777788874 89999999999999999999996542
Q ss_pred CcCcccccccCCC-CcCe--eeecccccCCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHhhccHHH
Q psy6547 88 RTGKLLAIHYEDV-RPDI--VILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIE 164 (266)
Q Consensus 88 ~~g~~~~~~~~~~-~~d~--~~~sK~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~ 164 (266)
...........+. ..|. .+++|+++++ .+.|+++.+ .+.+.++...+....-++..+
T Consensus 192 ~~~~~~~~~~~~~~~~d~~~~s~~K~l~~p-~g~g~~~~~-------------------~~~~~~~l~~l~~~g~~~~~~ 251 (345)
T cd06450 192 LPFPEPRHLDFGIERVDSISVDPHKYGLVP-LGCSAVLVR-------------------ALKLWATLRRFGRDGYGEHID 251 (345)
T ss_pred hhChhhHHHhcCccccCEEEEchhHhhCCC-cchHHHHHH-------------------HHHHHHHHHHHhHHHHHHHHH
Confidence 1111000000111 2443 3588998877 788887655 233333333332222245677
Q ss_pred HHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeC--ccchHHHHHHHHHHCCceeccC----CCCEEEEec
Q psy6547 165 NAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVS--AILEVYDVCIKMKDAGLVTKPI----SNNIIRLSP 238 (266)
Q Consensus 165 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~--~~~~~~~~~~~l~~~gi~~~~~----~~~~iR~~~ 238 (266)
+..++++++.+.|++ ++...+. ....+. ++.|.++.. .+.+..++.++|.++|+.+.+. ...++|+++
T Consensus 252 ~~~~~~~~l~~~L~~-~~~~~~~--~~~~~~---iv~f~~~~~~~~~~~~~~i~~~L~~~g~~~~~~~~~~~~~~lRis~ 325 (345)
T cd06450 252 RIVDLAKYLAELIRA-DPGFELL--GEPNLS---LVCFRLKPSVKLDELNYDLSDRLNERGGWHVPATTLGGPNVLRFVV 325 (345)
T ss_pred HHHHHHHHHHHHHhc-CCCeEEe--cCCcee---EEEEEECCcchhhHHHHHHHHHHHhcCCEEEEeeEECCeEEEEEEe
Confidence 788888888888887 4321110 011233 777776541 0245678999999996554432 357899999
Q ss_pred cCCC-CHHHHHHHHHHHHH
Q psy6547 239 ALNI-TEQELREGLDIIIN 256 (266)
Q Consensus 239 ~~~~-t~~~i~~~~~~l~~ 256 (266)
+..+ |++|++++++.|.+
T Consensus 326 ~~~~~t~~di~~l~~~l~~ 344 (345)
T cd06450 326 TNPLTTRDDADALLEDIER 344 (345)
T ss_pred cCCCCCHHHHHHHHHHHHh
Confidence 8764 99999999999875
No 254
>PLN02651 cysteine desulfurase
Probab=99.68 E-value=1.8e-15 Score=131.54 Aligned_cols=212 Identities=17% Similarity=0.163 Sum_probs=146.4
Q ss_pred CCCCceeecCC-----CHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcC
Q psy6547 16 HMPGYNIIPYN-----DVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTG 90 (266)
Q Consensus 16 ~~~~v~~~~~~-----d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g 90 (266)
.+.+++.++.+ |++++++++ .++++++++..+++++|.+. ++++|.++|+++|+++++|.+|+ ++.
T Consensus 111 ~g~~v~~v~~~~~~~~d~~~l~~~i--~~~t~lv~v~~~~n~tG~~~----~l~~I~~~~~~~g~~~~vD~a~~-~g~-- 181 (364)
T PLN02651 111 EGFEVTYLPVKSDGLVDLDELAAAI--RPDTALVSVMAVNNEIGVIQ----PVEEIGELCREKKVLFHTDAAQA-VGK-- 181 (364)
T ss_pred cCCEEEEEccCCCCcCCHHHHHHhc--CCCcEEEEEECCCCCceecc----cHHHHHHHHHHcCCEEEEEcchh-hCC--
Confidence 35567677643 789999999 44689999999999999887 89999999999999999999995 211
Q ss_pred cccccccCCCCcCeee--ecccccCCchhhhhheecHHhhhccCCCCC-------CCCCCCcHHHHHHHHHHHHHHhh--
Q psy6547 91 KLLAIHYEDVRPDIVI--LGKALSGGLYPISAVLADDEVMGTLVPGTH-------GSTYGGNPLACKLAMTALDVILE-- 159 (266)
Q Consensus 91 ~~~~~~~~~~~~d~~~--~sK~~~~g~~~~g~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~a~~~~l~~~~~-- 159 (266)
..+..+.++ +|+++ ..|+ +|+ ...|++..+++..+.+.+... ....+.+..+..++.++|+.+..
T Consensus 182 ~~~~~~~~~--~D~~~~s~hK~-~gp-~G~g~l~v~~~~~~~l~p~~~g~~~~~~~~~GT~~~~~~~~l~~al~~~~~~~ 257 (364)
T PLN02651 182 IPVDVDDLG--VDLMSISGHKI-YGP-KGVGALYVRRRPRVRLEPLMSGGGQERGRRSGTENTPLVVGLGAACELAMKEM 257 (364)
T ss_pred cccCcccCC--CCEEEechhhh-CCC-CceEEEEEcCCCCCCCCccccCCCccCCccCCCccHHHHHHHHHHHHHHHHhH
Confidence 223344444 46555 5696 444 458888888876666554321 22335666777888888887764
Q ss_pred ccHHHHHHHHHHHHHHHhhcccc-cCCCcc-cE-EecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccCC------
Q psy6547 160 ENMIENAYKMGEIFRSELSSPAN-KSKASF-KL-SSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPIS------ 230 (266)
Q Consensus 160 ~~~~~~~~~~~~~l~~~l~~~~~-~~~~~~-~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~------ 230 (266)
+...++.+++.+++++.|++.+. ...+.. .. ..... ++.|.++. .+++++.++|.+ |.++.+.
T Consensus 258 ~~i~~~~~~l~~~l~~~l~~~~~~~~i~~~~~~~~~~~~---i~~~~~~~---~~~~~~~~~L~~--i~v~~g~~c~~~~ 329 (364)
T PLN02651 258 DYDEKHMKALRERLLNGLRAKLGGVRVNGPRDPEKRYPG---TLNLSFAY---VEGESLLMGLKE--VAVSSGSACTSAS 329 (364)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCCEEEECCCCcccCcCC---EEEEEeCC---CCHHHHHHHhCC--EEEEchhhcCCCC
Confidence 44677888888888888875222 111111 01 11233 77777754 467889988865 7765331
Q ss_pred -----------------CCEEEEeccCCCCHHHHH
Q psy6547 231 -----------------NNIIRLSPALNITEQELR 248 (266)
Q Consensus 231 -----------------~~~iR~~~~~~~t~~~i~ 248 (266)
.+.+|+|++..+|++|+|
T Consensus 330 ~~~~~~~~~~g~~~~~~~~~vR~S~~~~~t~~did 364 (364)
T PLN02651 330 LEPSYVLRALGVPEEMAHGSLRLGVGRFTTEEEVD 364 (364)
T ss_pred CCcCHHHHHcCCChHHhCceEEEEcCCCCCHHHcC
Confidence 368999999999999975
No 255
>PRK04366 glycine dehydrogenase subunit 2; Validated
Probab=99.68 E-value=6.5e-15 Score=132.07 Aligned_cols=238 Identities=16% Similarity=0.105 Sum_probs=153.4
Q ss_pred cCcccccCCCCCCceeecC-----CCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEec
Q psy6547 7 PTSYNEFGPHMPGYNIIPY-----NDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADE 81 (266)
Q Consensus 7 ~~~~~~~~~~~~~v~~~~~-----~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De 81 (266)
|.........+.+++.++. .|+++|++++ ++++++++++.++ ++|.+ ..++++|.++|+++|+++++|.
T Consensus 172 p~~~~~~~~~G~~vv~v~~~~~~~~D~e~L~~~i--~~~t~~V~v~~Pn-~tG~~---~~dl~eI~~~a~~~gal~iVD~ 245 (481)
T PRK04366 172 GTNPASAAMAGFKVVEIPSNEDGLVDLEALKAAV--GEDTAALMLTNPN-TLGLF---ERNILEIAEIVHEAGGLLYYDG 245 (481)
T ss_pred HhHHHHHHHcCCEEEEeecCCCCCcCHHHHHhhc--ccCCeEEEEeCCC-Ccccc---chHHHHHHHHHHHcCCEEEEEe
Confidence 3333334456677777765 3789999998 4467887776544 56743 3479999999999999999999
Q ss_pred cccCcCCcCcccccccCCCCcCeee--eccccc-----CCchhhhhheecHHhhhccCCCC-------------------
Q psy6547 82 VQTGLGRTGKLLAIHYEDVRPDIVI--LGKALS-----GGLYPISAVLADDEVMGTLVPGT------------------- 135 (266)
Q Consensus 82 ~~~~~~~~g~~~~~~~~~~~~d~~~--~sK~~~-----~g~~~~g~~~~~~~~~~~~~~~~------------------- 135 (266)
++. .+..|.. ....+| .|+++ ..|+|+ || ..+|++.+++++.+.+....
T Consensus 246 a~~-~~~~g~~-~~~~~G--aD~~~~~~hK~l~~P~g~Gg-p~~G~l~~~~~~~~~lp~~~v~~~g~~~~l~~~r~~~i~ 320 (481)
T PRK04366 246 ANL-NAILGKA-RPGDMG--FDVVHLNLHKTFSTPHGGGG-PGSGPVGVKEELAPFLPVPVVEKDGDRYRLDYDRPKSIG 320 (481)
T ss_pred cCh-hhhcccC-CccccC--CCEEEEechhhcCCCCCCCC-CCeeeeeehhhhHhhCCCCeeeccCCceeecccccccCC
Confidence 983 2112221 222334 56655 569887 33 34677778877776653210
Q ss_pred CCCCCCCcHHHHHHHHHHHHHHhhccH---HHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEe--eCccc
Q psy6547 136 HGSTYGGNPLACKLAMTALDVILEENM---IENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILS--VSAIL 210 (266)
Q Consensus 136 ~~~~~~~~~~~~~a~~~~l~~~~~~~~---~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~~~ 210 (266)
....++.+.+.+.++...+..+..+++ .++..++.++++++|++ +....+. + .. .+-+.+... ...+.
T Consensus 321 r~~a~t~~~l~~~~a~~~l~~~G~~Gl~~~a~~~~~~a~~l~~~L~~-~~~~~~~----~-~~-~~~~~~~~~~~~~~g~ 393 (481)
T PRK04366 321 RVRAFYGNFGVLVRAYAYIRSLGAEGLREVSEDAVLNANYLKARLKD-IYDLPYD----R-PC-MHEFVLSGKKLKETGV 393 (481)
T ss_pred CcccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh-hCcccCC----C-Ce-eEEEEEECccccccCC
Confidence 011223344555666666676666654 45567789999999988 4211111 0 11 012333321 11134
Q ss_pred hHHHHHHHHHHCCceecc----C-CCCEEEEeccCCCCHHHHHHHHHHHHHHHHHHh
Q psy6547 211 EVYDVCIKMKDAGLVTKP----I-SNNIIRLSPALNITEQELREGLDIIINTINTMA 262 (266)
Q Consensus 211 ~~~~~~~~l~~~gi~~~~----~-~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~~ 262 (266)
+..++.++|.++||.+.. . ..+.+|++++..+|++|||++++.|+++.++..
T Consensus 394 ~~~~v~~~L~~~Gi~~~~~~~p~~~~~~l~is~~e~~t~edid~l~~~l~~i~~~~~ 450 (481)
T PRK04366 394 RTLDIAKRLLDYGFHPPTIYFPLIVPEALMIEPTETESKETLDAFIAAMKQIAEEAK 450 (481)
T ss_pred CHHHHHHHHHHCCccCCccccccccCCeEEEcccCCCCHHHHHHHHHHHHHHHHHHH
Confidence 688999999999998762 1 256899999999999999999999999887653
No 256
>PRK00451 glycine dehydrogenase subunit 1; Validated
Probab=99.68 E-value=1.1e-14 Score=129.97 Aligned_cols=215 Identities=18% Similarity=0.216 Sum_probs=140.3
Q ss_pred CCCCceeecCC----CHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEE--eccccCcCCc
Q psy6547 16 HMPGYNIIPYN----DVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIA--DEVQTGLGRT 89 (266)
Q Consensus 16 ~~~~v~~~~~~----d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~--De~~~~~~~~ 89 (266)
.+.+++.++.+ |+++|++++ .+++++++++++ +++|.+. ++++|.++|+++|+++++ |.+..+.
T Consensus 178 ~G~~~~~v~~~~~~~d~~~l~~~i--~~~t~~v~l~~p-n~tG~v~----~l~~I~~~a~~~~~~~iv~~d~~~~g~--- 247 (447)
T PRK00451 178 QGIEVVEVPYEDGVTDLEALEAAV--DDDTAAVVVQYP-NFFGVIE----DLEEIAEIAHAGGALFIVGVDPVSLGL--- 247 (447)
T ss_pred CCcEEEEecCCCCCCCHHHHHHhc--CCCeEEEEEECC-CCCCeeC----CHHHHHHHHHHCCCEEEEEcChHHhcc---
Confidence 46778888765 789999999 457888888776 6788875 899999999999999998 5443211
Q ss_pred CcccccccCCCCcCeee-----eccccc-CCchhhhhheecHHhhhccCCC---------------------------CC
Q psy6547 90 GKLLAIHYEDVRPDIVI-----LGKALS-GGLYPISAVLADDEVMGTLVPG---------------------------TH 136 (266)
Q Consensus 90 g~~~~~~~~~~~~d~~~-----~sK~~~-~g~~~~g~~~~~~~~~~~~~~~---------------------------~~ 136 (266)
......+ ..|+++ +||.+. +| +++|++.+++++.+.+.+. .+
T Consensus 248 --~~~~~~~--~~D~~~~s~~k~~~~~~~~G-pg~G~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (447)
T PRK00451 248 --LKPPGEY--GADIVVGEGQPLGIPLSFGG-PYLGFFATRKKLVRQMPGRLVGETVDADGKRGFVLTLQAREQHIRREK 322 (447)
T ss_pred --CCCcccC--CCCEEEECCCcCCCCCCCCC-CCchHHHhhHHHHhhCCCCEeeeecccCCCeeeEeecccccccccccc
Confidence 1111223 345554 566655 67 7899999988887764211 01
Q ss_pred CC-CCCCcHHHH-HHHHHHHHHHhh---ccHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeE---EEEeeCc
Q psy6547 137 GS-TYGGNPLAC-KLAMTALDVILE---ENMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINT---LILSVSA 208 (266)
Q Consensus 137 ~~-~~~~~~~~~-~a~~~~l~~~~~---~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~---~~~~~~~ 208 (266)
.. +...+...+ .++..+++.+.. ++..+++.+++++++++|++ ++. +. +. .+. ++. +.++
T Consensus 323 ~~~~~~~~~~~~~~aaa~~l~~~~~~g~~~~~~~~~~~~~~l~~~L~~-~~g--~~--~~-~~~---~~~~~~v~~~--- 390 (447)
T PRK00451 323 ATSNICTNQALNALAAAIYMSLLGPEGLRELAEQNHQKAHYLAERLAE-IGG--VE--LF-DGP---FFNEFVVRLP--- 390 (447)
T ss_pred ccccccccHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHhh-cCC--EE--ec-CCC---eEEEEEEecC---
Confidence 11 111111111 233334443333 45678888899999999887 432 11 11 122 332 3332
Q ss_pred cchHHHHHHHHHHCCceec----cC---CCCEEEEeccCCCCHHHHHHHHHHHHHHH
Q psy6547 209 ILEVYDVCIKMKDAGLVTK----PI---SNNIIRLSPALNITEQELREGLDIIINTI 258 (266)
Q Consensus 209 ~~~~~~~~~~l~~~gi~~~----~~---~~~~iR~~~~~~~t~~~i~~~~~~l~~~~ 258 (266)
.+..+++++|.++|+.+. +. ..+++|++++..+|+++++++++.|++++
T Consensus 391 -~~~~~~~~~L~~~gi~~~~~~~~~~~~~~~~~rvs~~~~~t~e~i~~l~~~L~~~~ 446 (447)
T PRK00451 391 -KPAEEVNEALLEKGILGGYDLGRYYPELGNHLLVCVTEKRTKEDIDALVAALGEVL 446 (447)
T ss_pred -CCHHHHHHHHHhcCCCCCcccccccCCcCCEEEEecCCCCCHHHHHHHHHHHHHHh
Confidence 256889999999988743 11 23689999998899999999999998764
No 257
>cd00614 CGS_like CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis. This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life.
Probab=99.67 E-value=6e-16 Score=134.58 Aligned_cols=224 Identities=15% Similarity=0.100 Sum_probs=145.6
Q ss_pred CCCCCCceeecCCCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCccc
Q psy6547 14 GPHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLL 93 (266)
Q Consensus 14 ~~~~~~v~~~~~~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~ 93 (266)
..++.+++.++.+|++++++.++ +++++|++++++|++|.+. ++++|.++|+++|+++|+|++|... .....
T Consensus 101 ~~~g~~~~~v~~~d~~~l~~~i~--~~~~~v~~e~~~np~g~~~----dl~~i~~la~~~g~~livD~t~~~~-~~~~~- 172 (369)
T cd00614 101 PKLGIEVTFVDPDDPEALEAAIK--PETKLVYVESPTNPTLKVV----DIEAIAELAHEHGALLVVDNTFATP-YLQRP- 172 (369)
T ss_pred hhcCeEEEEeCCCCHHHHHHhcC--CCCeEEEEECCCCCCCeec----CHHHHHHHHHHcCCEEEEECCCcch-hcCCh-
Confidence 35677899999999999999993 4689999999999999886 7999999999999999999999422 11111
Q ss_pred ccccCCCCcCeeeecccccCC-chhhhhheecH-HhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHhhccHHHHHHHHHH
Q psy6547 94 AIHYEDVRPDIVILGKALSGG-LYPISAVLADD-EVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGE 171 (266)
Q Consensus 94 ~~~~~~~~~d~~~~sK~~~~g-~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~ 171 (266)
. .++.+..+.+++|.++|+ -.++|++++++ ++.+.+...........++..+.++...++.+ +...++..+++.
T Consensus 173 -~-~~g~Divv~S~tK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~g~~~~p~~a~~~l~~l~tl--~~r~~~~~~na~ 248 (369)
T cd00614 173 -L-ELGADIVVHSATKYIGGHSDVIAGVVVGSGEALIQRLRFLRLALGTILSPFDAWLLLRGLKTL--PLRMERHSENAL 248 (369)
T ss_pred -h-hhCCcEEEeccceeccCCCCceEEEEEeCcHHHHHHHHHHHHhhCCCCCHHHHHHHHcCCCCH--HHHHHHHHHHHH
Confidence 1 123333344599999842 15688999876 77776664333334456677666665555422 234566677788
Q ss_pred HHHHHhhccccc------CCCccc---------EEecCccceeeEEEEeeCccchHHHHHHHHHHCCceec---------
Q psy6547 172 IFRSELSSPANK------SKASFK---------LSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTK--------- 227 (266)
Q Consensus 172 ~l~~~l~~~~~~------~~~~~~---------~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~--------- 227 (266)
.+.+.|++ .+. +.++.. ..+.|. ++.|.+.. +.....+|++.|.--.+.+.
T Consensus 249 ~la~~L~~-~~~v~~V~~p~l~~~~~~~~~~~~~~g~g~---i~s~~l~~-~~~~~~~f~~~l~~~~~~~s~G~~~sl~~ 323 (369)
T cd00614 249 KVAEFLEK-HPKVERVYYPGLPSHPQHELAKKQMSGYGG---VFSFELKG-GLEAAKKFLNALKLFSLAVSLGGVESLVE 323 (369)
T ss_pred HHHHHHHc-CCCccEEECCCCCCCchHHHHHHhcCCCce---EEEEEeCC-CHHHHHHHHHcCCcceEcccCCCCceeee
Confidence 88888876 441 111110 123466 99999963 13345566665542211110
Q ss_pred -cC-----------------CCCEEEEeccCCCCHHHHHHHHHHHHHHH
Q psy6547 228 -PI-----------------SNNIIRLSPALNITEQELREGLDIIINTI 258 (266)
Q Consensus 228 -~~-----------------~~~~iR~~~~~~~t~~~i~~~~~~l~~~~ 258 (266)
|. ..+.+|+|..+ |+.+.+++.|++++
T Consensus 324 ~~~~~~~~~~~~~~~~~~g~~~~liR~svGl----E~~~dl~~dl~~al 368 (369)
T cd00614 324 HPASMTHSQLPPEERAAAGITPGLVRLSVGI----EDVEDLIADLEQAL 368 (369)
T ss_pred CCcccccccCCHHHHHhcCCCCCeEEEEeCc----CCHHHHHHHHHHhh
Confidence 10 14689999665 56677777777765
No 258
>KOG0256|consensus
Probab=99.66 E-value=8.5e-15 Score=122.69 Aligned_cols=221 Identities=16% Similarity=0.202 Sum_probs=147.6
Q ss_pred CHHHHHHHHhc----CCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccC--cCCcCcccccc---c
Q psy6547 27 DVDALEAKLKS----NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTG--LGRTGKLLAIH---Y 97 (266)
Q Consensus 27 d~~~l~~~l~~----~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~--~~~~g~~~~~~---~ 97 (266)
+.++||+++.+ .-+++++++..++|+-|++ ++++.+..+...+.++++.+|+||+|++ |+.. .+-++. .
T Consensus 209 tv~alE~A~~~A~~~~~kVkGvlitNPsNPLG~~-~~~e~L~~ll~Fa~~kniHvI~DEIya~sVF~~~-~F~Sv~ev~~ 286 (471)
T KOG0256|consen 209 TVEALEAALNQARKLGLKVKGVLITNPSNPLGTT-LSPEELISLLNFASRKNIHVISDEIYAGSVFDKS-EFRSVLEVRK 286 (471)
T ss_pred cHHHHHHHHHHHHHhCCceeEEEEeCCCCCCCCc-cCHHHHHHHHHHHhhcceEEEeehhhcccccCcc-CceEHHHHhh
Confidence 47888887754 3389999998888888987 8999999999999999999999999976 3221 111111 1
Q ss_pred -CCCCcC----eeeeccccc-CCchhhhhhee-cHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHH--Hhh---ccHHHH
Q psy6547 98 -EDVRPD----IVILGKALS-GGLYPISAVLA-DDEVMGTLVPGTHGSTYGGNPLACKLAMTALDV--ILE---ENMIEN 165 (266)
Q Consensus 98 -~~~~~d----~~~~sK~~~-~g~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~--~~~---~~~~~~ 165 (266)
...++| ++++||-|| +| +|+|.+.. ++.+...... ...-...|+..+..+..-|.. +.+ .+-..+
T Consensus 287 ~~~~~~~rvHivyslSKD~GlpG-fRvGviYS~ne~VvsaA~k--mssf~~vSs~tQ~~la~LLSD~~f~~~yl~en~~R 363 (471)
T KOG0256|consen 287 DPHLDPDRVHIVYSLSKDFGLPG-FRVGVIYSNNEDVVSAATK--MSSFGLVSSQTQYLLASLLSDEEFTREYLRENNKR 363 (471)
T ss_pred ccccCCCcEEEEEEeccccCCCc-eEEEEEEecChHHHHHHHH--HhhccCCcHHHHHHHHHHhchHHHHHHHHHHHHHH
Confidence 111222 455999999 99 99999876 5556555543 222333455566555544433 111 123455
Q ss_pred HHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCc---cc-hHHHHHHHHHHC-CceeccC------CCCEE
Q psy6547 166 AYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSA---IL-EVYDVCIKMKDA-GLVTKPI------SNNII 234 (266)
Q Consensus 166 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~---~~-~~~~~~~~l~~~-gi~~~~~------~~~~i 234 (266)
++.+.+++.+.|++ + .++....+.|+ |.|+++..-- .. ...++-+++.++ ++.++|+ .++|+
T Consensus 364 l~~rh~~~~~gLk~-l---gI~cl~s~AGl---F~wvDlr~lL~s~tfe~El~Lw~~i~~~vklnlSpG~s~~C~EpGWF 436 (471)
T KOG0256|consen 364 LRIRHRYIVEGLKA-L---GIPCLKSNAGL---FCWVDLRKLLTSLTFEGELELWERILDNVKLNLSPGSSCHCHEPGWF 436 (471)
T ss_pred HHHHHHHHHhhHHh-c---CCceeecCCee---EEEEEhHHhcCcCChHHHHHHHHHHHHhhccccCCCCcceecCCCeE
Confidence 55666666666666 4 35543557899 9999976511 12 233456667766 9999987 46999
Q ss_pred EEeccCCCCHHHHHHHHHHHHHHHHH
Q psy6547 235 RLSPALNITEQELREGLDIIINTINT 260 (266)
Q Consensus 235 R~~~~~~~t~~~i~~~~~~l~~~~~~ 260 (266)
|+|.. +..++.++-+++||..++..
T Consensus 437 RvcFA-n~~~~t~~~am~Ri~~~~~~ 461 (471)
T KOG0256|consen 437 RVCFA-NMSEETLEVAMRRLKQFLDS 461 (471)
T ss_pred EEEec-cCCHHHHHHHHHHHHHHHHh
Confidence 99944 44566666699999998874
No 259
>TIGR01437 selA_rel uncharacterized pyridoxal phosphate-dependent enzyme. This model describes a protein related to a number of pyridoxal phosphate-dependent enzymes, and in particular to selenocysteine synthase (SelA), which converts Ser to selenocysteine on its tRNA. While resembling SelA, this protein is found only in species that have a better candidate SelA or else lack the other genes (selB, selC, and selD) required for selenocysteine incorporation.
Probab=99.66 E-value=1.5e-14 Score=125.41 Aligned_cols=225 Identities=14% Similarity=0.078 Sum_probs=139.1
Q ss_pred CCCceeec---CCCHHHHHHHHhcCCCEEEEE-EccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCcc
Q psy6547 17 MPGYNIIP---YNDVDALEAKLKSNPNICAFM-VEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKL 92 (266)
Q Consensus 17 ~~~v~~~~---~~d~~~l~~~l~~~~~~~~i~-~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~ 92 (266)
+.++++++ ..|++++++++ .+++++++ +++.++++|.+. ++++|.++|++||+++++|++|. . ...
T Consensus 124 g~~~v~v~~~~~~d~~~le~ai--~~~t~ai~~v~~~~~~~g~~~----~~~~i~~~a~~~gi~vivD~a~~-~--~~~- 193 (363)
T TIGR01437 124 GGKVVEAGYANECSAEQLEAAI--TEKTAAILYIKSHHCVQKSML----SVEDAAQVAQEHNLPLIVDAAAE-E--DLQ- 193 (363)
T ss_pred CCeEEEEcCCCCCCHHHHHHhc--ChhceEEEEEecCCCCcCCcC----CHHHHHHHHHHcCCeEEEECCCC-C--chH-
Confidence 33455554 24899999999 45677666 566666677765 78999999999999999999995 1 011
Q ss_pred cccccCCCCcCeeeecccccCCchhhhhheecHHhhhccCCCCCC--CCCCCcHHHHHHHHHHHHHHhh--ccHHHHHHH
Q psy6547 93 LAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHG--STYGGNPLACKLAMTALDVILE--ENMIENAYK 168 (266)
Q Consensus 93 ~~~~~~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~a~~~~l~~~~~--~~~~~~~~~ 168 (266)
....++.+.-+.+.+|+++| ++.|++++++++++.+....+. ..+.......++..++++.+.. .+..+...+
T Consensus 194 -~~~~~g~D~~~~S~~K~l~g--p~~G~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~gl~aAl~~~~~~~~~~~~~~~~ 270 (363)
T TIGR01437 194 -KYYRLGADLVIYSGAKAIEG--PTSGLVLGKKKYIEWVKLQSKGIGRAMKVGKENILGLTAALEQYLSTGKESGAEMVA 270 (363)
T ss_pred -HHHHcCCCEEEEeCCcccCC--CceEEEEEcHHHHHHHHhccCCCcceeccCHHHHHHHHHHHHHHHccCcccHHHHHH
Confidence 11123433333446698865 4689988888777665322111 1111222345555566666544 234445555
Q ss_pred HHHHHHHHhhcccccCCCcccEEecCc--cceeeEEEEeeCccchHHHHHHHHHHCC--ceecc--CCCCEEEEeccCCC
Q psy6547 169 MGEIFRSELSSPANKSKASFKLSSGGL--KKSINTLILSVSAILEVYDVCIKMKDAG--LVTKP--ISNNIIRLSPALNI 242 (266)
Q Consensus 169 ~~~~l~~~l~~~~~~~~~~~~~~~~g~--~~~~~~~~~~~~~~~~~~~~~~~l~~~g--i~~~~--~~~~~iR~~~~~~~ 242 (266)
+.+.++++|.+ ++.-.+.......+. +.+.+.|.... .+.+..++++.|.+++ |.+++ ...+.+|+.+.. +
T Consensus 271 ~~~~l~~~L~~-i~g~~~~~~~~~~~~~~~~~~v~~~~~~-~g~~~~~l~~~L~~~~~~I~~r~~~~~~~~~~l~~~~-~ 347 (363)
T TIGR01437 271 KLTPFIEALNT-LKGVSASIVQDEAGRDIARAEIRFDESE-LGMTAADVVQALRQGEPAIYTRGYKANEGIIEIDPRS-V 347 (363)
T ss_pred HHHHHHHHHhc-CCCeEEEEecCCCCCcCceEEEEEeccC-CCCCHHHHHHHHhcCCCCEEEeeeeecCCeEEEEeec-C
Confidence 67789999888 532111100011111 11122233211 1467899999999877 77774 356789999885 6
Q ss_pred CHHHHHHHHHHHHHH
Q psy6547 243 TEQELREGLDIIINT 257 (266)
Q Consensus 243 t~~~i~~~~~~l~~~ 257 (266)
+++|++.++++|++.
T Consensus 348 ~~~e~~~~~~~l~~~ 362 (363)
T TIGR01437 348 TGGQLDIIVERIREI 362 (363)
T ss_pred CHHHHHHHHHHHHHh
Confidence 799999999999875
No 260
>PTZ00094 serine hydroxymethyltransferase; Provisional
Probab=99.66 E-value=1.1e-14 Score=129.74 Aligned_cols=215 Identities=15% Similarity=0.146 Sum_probs=140.8
Q ss_pred CHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCcc-cccccCCCCcCee
Q psy6547 27 DVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKL-LAIHYEDVRPDIV 105 (266)
Q Consensus 27 d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~-~~~~~~~~~~d~~ 105 (266)
|+++|++++++. +++++++. .+..|... ++++|.++|+++|+++++|++|+ +|..+.. +..... ..|++
T Consensus 170 d~~~L~~~l~~~-~~~lvi~~--~s~~g~~~----di~~I~~i~~~~ga~l~vDaaq~-~G~i~~~~~~~~~~--~~D~l 239 (452)
T PTZ00094 170 DYDKLEELAKAF-RPKLIIAG--ASAYPRDI----DYKRFREICDSVGAYLMADIAHT-SGLVAAGVLPSPFP--YADVV 239 (452)
T ss_pred CHHHHHHHHHHh-CCCEEEEe--CCCCCCcc----CHHHHHHHHHHcCCEEEEeccch-hccccCCCCCCCCC--CCcEE
Confidence 899999999653 34555552 33466666 89999999999999999999993 3333221 111112 35666
Q ss_pred e--ecccccCCchhhhhheecHHhhhccCCC---CC--CCCCCCcHHHHHHHHHHHHHHhh---ccHHHHHHHHHHHHHH
Q psy6547 106 I--LGKALSGGLYPISAVLADDEVMGTLVPG---TH--GSTYGGNPLACKLAMTALDVILE---ENMIENAYKMGEIFRS 175 (266)
Q Consensus 106 ~--~sK~~~~g~~~~g~~~~~~~~~~~~~~~---~~--~~~~~~~~~~~~a~~~~l~~~~~---~~~~~~~~~~~~~l~~ 175 (266)
+ .+|+|.|+ . .|++++++++.+.+... .. ...-++++...++..++++.+.. +++.+++.++.+++.+
T Consensus 240 ~~S~hK~l~GP-~-Gg~l~~~~~~~~~l~~~~~~~~~p~~~G~~~~~~iaal~~al~~~~~~~~~~~~~~i~~l~~~l~~ 317 (452)
T PTZ00094 240 TTTTHKSLRGP-R-SGLIFYRKKVKPDIENKINEAVFPGLQGGPHNHQIAAIAVQLKEVQSPEWKEYAKQVLKNAKALAA 317 (452)
T ss_pred EcCCccCCCCC-C-ceEEEEecccchHHHHhhccccCCCCCCCchHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHH
Confidence 6 66999765 4 57777766543322111 01 11114566677788888888754 3578889999999999
Q ss_pred HhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceecc----C-----CCCEEEEeccCCCC---
Q psy6547 176 ELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKP----I-----SNNIIRLSPALNIT--- 243 (266)
Q Consensus 176 ~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~----~-----~~~~iR~~~~~~~t--- 243 (266)
.|.+ .+..... .+.+++...+.+... +.+..++...|.++||.+.. . ..+++|++++..++
T Consensus 318 ~L~~-~g~~v~~-----~~~~~~~~~v~~~~~-~~~~~~~~~~L~~~gI~vs~~~~p~~~~~~~~~~vRis~~~~tt~g~ 390 (452)
T PTZ00094 318 ALEK-RGYDLVT-----GGTDNHLVLVDLRPF-GITGSKMEKLLDAVNISVNKNTIPGDKSALNPSGVRLGTPALTTRGA 390 (452)
T ss_pred HHHh-CCcEEec-----CCCCCceEeecCCcC-CCCHHHHHHHHHHCCcEEecccCCCCCcCCCCCeEEECCHHHHhCCC
Confidence 9877 4321111 111122444444321 34677888889888999952 1 24789999976665
Q ss_pred -HHHHHHHHHHHHHHHHH
Q psy6547 244 -EQELREGLDIIINTINT 260 (266)
Q Consensus 244 -~~~i~~~~~~l~~~~~~ 260 (266)
++|++++++.|.+.+..
T Consensus 391 ~~~di~~l~~~l~~~~~~ 408 (452)
T PTZ00094 391 KEKDFKFVADFLDRAVKL 408 (452)
T ss_pred CHHHHHHHHHHHHHHHHH
Confidence 99999999999998875
No 261
>PRK00011 glyA serine hydroxymethyltransferase; Reviewed
Probab=99.65 E-value=9.9e-15 Score=129.09 Aligned_cols=217 Identities=14% Similarity=0.165 Sum_probs=137.5
Q ss_pred CCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEecccc-CcCCcCc-ccccccCCCCcC
Q psy6547 26 NDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQT-GLGRTGK-LLAIHYEDVRPD 103 (266)
Q Consensus 26 ~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~-~~~~~g~-~~~~~~~~~~~d 103 (266)
.|+++++++++++ +++++++... +.|... ++++|.++|+++|+++|+|++|. |+...|. ..... +.+.-
T Consensus 152 ~d~~~l~~~i~~~-~~k~v~~~~~--~~~~~~----~~~~I~~la~~~~~~livD~a~~~g~~~~g~~~~~~~--~~di~ 222 (416)
T PRK00011 152 IDYDEVEKLALEH-KPKLIIAGAS--AYSRPI----DFKRFREIADEVGAYLMVDMAHIAGLVAAGVHPSPVP--HADVV 222 (416)
T ss_pred cCHHHHHHHHHhc-CCCEEEECCC--cCCCcc----CHHHHHHHHHHcCCEEEEECcchhcccccCccCCCCC--CCcEE
Confidence 3799999999543 5677777532 233333 78999999999999999999983 3211221 11121 23333
Q ss_pred eeeecccccCCchhhhhheec-HHhhhccCCCCCCCCCC-CcHHHHHHHHHHH-HHHhh--ccHHHHHHHHHHHHHHHhh
Q psy6547 104 IVILGKALSGGLYPISAVLAD-DEVMGTLVPGTHGSTYG-GNPLACKLAMTAL-DVILE--ENMIENAYKMGEIFRSELS 178 (266)
Q Consensus 104 ~~~~sK~~~~g~~~~g~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~a~~~~l-~~~~~--~~~~~~~~~~~~~l~~~l~ 178 (266)
+.+++|++ +| .++|+++++ +++.+.+........++ .....++++..++ +.... +++.++++++++++++.|+
T Consensus 223 ~~S~~K~l-~g-~~gg~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~aa~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~ 300 (416)
T PRK00011 223 TTTTHKTL-RG-PRGGLILTNDEELAKKINSAVFPGIQGGPLMHVIAAKAVAFKEALEPEFKEYAQQVVKNAKALAEALA 300 (416)
T ss_pred EecCCcCC-CC-CCceEEEeCCHHHHHHHHHHhCccccCCccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 44589999 45 689999985 67776665332222222 2222333333333 32221 4577888899999999998
Q ss_pred cccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceecc----C------CCCEEEEecc----CCCCH
Q psy6547 179 SPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKP----I------SNNIIRLSPA----LNITE 244 (266)
Q Consensus 179 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~----~------~~~~iR~~~~----~~~t~ 244 (266)
+ ++.... . .+..++++++.+++. +.+..++.+.|.++||.+.. . .+..+|++.. ..+++
T Consensus 301 ~-~g~~~~----~-~~~~~~~~~i~~~~~-~~~~~~~~~~L~~~GI~v~~~~~p~~~~~~~~~~~~Ri~~~~~~~~~~t~ 373 (416)
T PRK00011 301 E-RGFRVV----S-GGTDNHLVLVDLRSK-GLTGKEAEAALEEANITVNKNAVPFDPRSPFVTSGIRIGTPAITTRGFKE 373 (416)
T ss_pred h-CCCeee----e-cCCCCeEEEEeCccc-CCCHHHHHHHHHHcCcEEccCcCCCCCCCCCCCCceEecCHHHhhcCcCH
Confidence 7 542111 1 111224888888541 33567899999999999973 1 2356899643 25789
Q ss_pred HHHHHHHHHHHHHHHH
Q psy6547 245 QELREGLDIIINTINT 260 (266)
Q Consensus 245 ~~i~~~~~~l~~~~~~ 260 (266)
+|++++++.|++++..
T Consensus 374 ~di~~l~~~l~~~~~~ 389 (416)
T PRK00011 374 AEMKEIAELIADVLDN 389 (416)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 9999999999988765
No 262
>TIGR01325 O_suc_HS_sulf O-succinylhomoserine sulfhydrylase. This model describes O-succinylhomoserine sulfhydrylase, one of several related pyridoxal phosphate-dependent enzymes of cysteine and methionine metabolism. This enzyme is part of an alternative pathway of homocysteine biosynthesis, a step in methionine biosynthesis.
Probab=99.65 E-value=2.5e-15 Score=131.11 Aligned_cols=187 Identities=15% Similarity=0.177 Sum_probs=123.0
Q ss_pred CCCCCCceeecCCCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCccc
Q psy6547 14 GPHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLL 93 (266)
Q Consensus 14 ~~~~~~v~~~~~~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~ 93 (266)
..++.+++.++.+|++++++.+ .+++++|+++.++|+.|.+. ++++|.++|+++|+++|+|++|... ....+.
T Consensus 115 ~~~g~~v~~v~~~d~~~l~~~i--~~~tklV~le~p~np~g~~~----dl~~I~~la~~~gi~livD~a~~~~-~~~~pl 187 (380)
T TIGR01325 115 PRFGIEVSFVDPTDLNAWEAAV--KPNTKLVFVETPSNPLGELV----DIAALAELAHAIGALLVVDNVFATP-VLQQPL 187 (380)
T ss_pred HHhCCEEEEECCCCHHHHHHhc--CCCceEEEEECCCCCCCeee----CHHHHHHHHHHcCCEEEEECCCccc-ccCCch
Confidence 3357788999999999999998 44689999999999888887 8999999999999999999999532 111111
Q ss_pred ccccCCCCcCeee--ecccccCCchhh-hhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHhhccHHHHHHHHH
Q psy6547 94 AIHYEDVRPDIVI--LGKALSGGLYPI-SAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMG 170 (266)
Q Consensus 94 ~~~~~~~~~d~~~--~sK~~~~g~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~ 170 (266)
...+|+++ ++|+++|+..++ |++++++++.+.+...........++..+..++..++.+.. ..++..+++
T Consensus 188 -----~~g~Divv~S~sK~l~g~g~~~gG~vv~~~~~~~~l~~~~~~~g~~~~p~~a~~~l~~l~tl~~--r~~~~~~~a 260 (380)
T TIGR01325 188 -----KLGADVVVYSATKHIDGQGRVMGGVIAGSEELMAEVAVYLRHTGPAMSPFNAWVLLKGLETLSL--RMQKQFDSA 260 (380)
T ss_pred -----hhCCCEEEeeccceecCCCCeEEEEEEeCHHHHHHHHHHHHhhCCCCCHHHHHHHHhccCcHHH--HHHHHHHHH
Confidence 22345554 899998531454 77888888777665432222233455555555555544332 345555666
Q ss_pred HHHHHHhhcccc------cCCCccc---------EEecCccceeeEEEEeeCccchHHHHHHHHH
Q psy6547 171 EIFRSELSSPAN------KSKASFK---------LSSGGLKKSINTLILSVSAILEVYDVCIKMK 220 (266)
Q Consensus 171 ~~l~~~l~~~~~------~~~~~~~---------~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~ 220 (266)
..+.+.|++ .+ .+..+.. ..+.|. ++.|++.. .....+|.+.|+
T Consensus 261 ~~la~~L~~-~p~v~~V~yp~l~s~~~~~~~~~~~~g~g~---~~s~~l~~--~~~~~~f~~~l~ 319 (380)
T TIGR01325 261 LAIAEWLQA-QPQVQAVYYPGLPDHPQHELARRQQSGGGT---VIGFDVAD--RAAAWKVLDAVE 319 (380)
T ss_pred HHHHHHHHc-CCCccEEECCCCCCCccHHHHHhhCCCCce---EEEEEECC--HHHHHHHHHcCC
Confidence 667777765 33 1222211 124567 99999973 345667777664
No 263
>PRK06767 methionine gamma-lyase; Provisional
Probab=99.65 E-value=3.2e-15 Score=130.71 Aligned_cols=221 Identities=14% Similarity=0.126 Sum_probs=143.3
Q ss_pred CCCceeecCCCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCcccccc
Q psy6547 17 MPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIH 96 (266)
Q Consensus 17 ~~~v~~~~~~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~~~~ 96 (266)
+.++..++..|++++++++ .+++++|+++.++|++|.+. ++++|.++|+++|+++|+|++|+.. ..+.+ .
T Consensus 125 gi~~~~~~~~d~~~l~~~i--~~~tklV~lesp~NptG~v~----dl~~I~~la~~~g~~vivD~a~a~~-~~~~p--l- 194 (386)
T PRK06767 125 MITHSFCDMETEADIENKI--RPNTKLIFVETPINPTMKLI----DLKQVIRVAKRNGLLVIVDNTFCSP-YLQRP--L- 194 (386)
T ss_pred CeEEEEeCCCCHHHHHHhh--CcCceEEEEeCCCCCCceec----CHHHHHHHHHHcCCEEEEECCCccc-ccCCc--h-
Confidence 4455666667899999998 44789999999999999887 7999999999999999999999421 11221 1
Q ss_pred cCCCCcCeeeecccccC-Cchhh-hhheecHHhhhccCCC-CCCCCCCCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHH
Q psy6547 97 YEDVRPDIVILGKALSG-GLYPI-SAVLADDEVMGTLVPG-THGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIF 173 (266)
Q Consensus 97 ~~~~~~d~~~~sK~~~~-g~~~~-g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l 173 (266)
..+.+..+.+++|.++| | .++ |+++++++.++.+... ........+++.+.++...|+.+ +...++.++++..+
T Consensus 195 ~~g~Div~~S~sK~l~g~g-~~~gG~v~~~~~~i~~~~~~~~~~~g~~~~~~~a~l~~~~L~tl--~~r~~~~~~~a~~l 271 (386)
T PRK06767 195 ELGCDAVVHSATKYIGGHG-DVVAGVTICKTRALAEKIRPMRKDIGGIMAPFDAWLLLRGLKTL--AVRMDRHCDNAEKI 271 (386)
T ss_pred hcCCcEEEecCcceecCCC-CceeEEEEeChHHHHHHHHHHHHHhCCCCCHHHHHHHHcCCCcH--HHHHHHHHHHHHHH
Confidence 23444444458899985 5 664 8888888776554311 11111123555555554444322 23456677888888
Q ss_pred HHHhhccccc-CCCc--c------cEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccC---------------
Q psy6547 174 RSELSSPANK-SKAS--F------KLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPI--------------- 229 (266)
Q Consensus 174 ~~~l~~~~~~-~~~~--~------~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~--------------- 229 (266)
.+.|++ .+. ..+. . ...+.|. ++.|.+... ..++.+|++.|...++.++.+
T Consensus 272 a~~L~~-~p~v~~v~~p~~~~~~~~~~~~gg---~vsf~l~~~-~~~~~~f~~~l~~~~~~~s~G~~~sl~~~p~~~~~~ 346 (386)
T PRK06767 272 VSFLKN-HDAVEGVWYPEGELASRQMKRGGG---VISFSIKGG-KEETQAFINDLHFITIAVSLGDTETLIQHPATMTHA 346 (386)
T ss_pred HHHHHc-CCCccEEECCCcHHHHHhCCCCCc---eEEEEEcCC-HHHHHHHHHhCCccEEecCCCCcCccccCCCccccc
Confidence 888887 432 1111 0 0224466 899998641 345778999998776655422
Q ss_pred ------------CCCEEEEeccCCCCHHHHHHHHHHHHHHHH
Q psy6547 230 ------------SNNIIRLSPALNITEQELREGLDIIINTIN 259 (266)
Q Consensus 230 ------------~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~ 259 (266)
..+.+|+|+.+. |.+.+++.|+++++
T Consensus 347 ~~~~~~~~~~gi~~~l~R~svGlE----~~~dl~~dl~~al~ 384 (386)
T PRK06767 347 AIPAELRQEMGIYDNLIRLSVGLE----SWEDIVSDLEQALK 384 (386)
T ss_pred cCCHHHHHhcCCCCCeEEEEeccC----CHHHHHHHHHHHHh
Confidence 136899995554 46666777777765
No 264
>PRK08247 cystathionine gamma-synthase; Reviewed
Probab=99.65 E-value=2.8e-15 Score=130.19 Aligned_cols=221 Identities=14% Similarity=0.129 Sum_probs=142.0
Q ss_pred CCCCCCceeecCCCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEecccc-CcCCcCcc
Q psy6547 14 GPHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQT-GLGRTGKL 92 (266)
Q Consensus 14 ~~~~~~v~~~~~~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~-~~~~~g~~ 92 (266)
..++.+++.++..|++++++++ ++++++|+++.++|+.+.+ .++++|.++|+++|+++|+||+|. ++ .+.+
T Consensus 112 ~~~G~~v~~vd~~d~~~l~~~i--~~~tklv~le~P~NP~~~~----~dl~~I~~la~~~g~~lIvD~t~~~~~--~~~p 183 (366)
T PRK08247 112 KKWNVRFVYVNTASLKAIEQAI--TPNTKAIFIETPTNPLMQE----TDIAAIAKIAKKHGLLLIVDNTFYTPV--LQRP 183 (366)
T ss_pred hccCceEEEECCCCHHHHHHhc--ccCceEEEEECCCCCCCcH----HHHHHHHHHHHHcCCEEEEECCCcccc--ccCc
Confidence 3467889999988999999999 4478999998888775544 599999999999999999999993 22 1111
Q ss_pred cccccCCCCcCeeeecccccC--Cchhhhhheec-HHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHhhccHHHHHHHH
Q psy6547 93 LAIHYEDVRPDIVILGKALSG--GLYPISAVLAD-DEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKM 169 (266)
Q Consensus 93 ~~~~~~~~~~d~~~~sK~~~~--g~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~ 169 (266)
. ..+.+..+.++||.++| + ...|+++++ +++.+.+...........++..+..+...++.+. ...++.+++
T Consensus 184 --~-~~g~di~i~S~sK~~~g~~d-~~~G~iv~~~~~l~~~~~~~~~~~g~~~s~~~a~l~~~~l~tl~--~r~~~~~~~ 257 (366)
T PRK08247 184 --L-EEGADIVIHSATKYLGGHND-VLAGLVVAKGQELCERLAYYQNAAGAVLSPFDSWLLIRGMKTLA--LRMRQHEEN 257 (366)
T ss_pred --h-hcCCcEEEeecceeccCCCc-eeeeEEecChHHHHHHHHHHHHhcCCCCChHHHHHHHhccCcHH--HHHHHHHHH
Confidence 1 23445556669999984 4 467888876 5666655533333344566776666666555332 234455777
Q ss_pred HHHHHHHhhcccccCCCc-ccEEecCccceeeEEEEeeCccchHHHHHHHHH----------HCCceeccC---------
Q psy6547 170 GEIFRSELSSPANKSKAS-FKLSSGGLKKSINTLILSVSAILEVYDVCIKMK----------DAGLVTKPI--------- 229 (266)
Q Consensus 170 ~~~l~~~l~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~----------~~gi~~~~~--------- 229 (266)
++.+.+.|++ .+ .+. ...++.|. ++.|.+.. .....+|.+.+. .+++++.|.
T Consensus 258 a~~l~~~L~~-~p--~v~~v~~P~~gg---~~sf~~~~--~~~~~~~~~~l~~~~~~~slg~~~sl~~~p~~~~~~~~~~ 329 (366)
T PRK08247 258 AKAIAAFLNE-QP--GVTDVLYPGRGG---MLSFRLQD--EEWVNPFLKSLKLITFAESLGGVESFITYPATQTHADIPE 329 (366)
T ss_pred HHHHHHHHHh-CC--CeeEEecCCcCc---EEEEEECC--HHHHHHHHHcCCcceEccCCCCCceEEECCcccccccCCH
Confidence 7888888877 32 221 11233567 88887743 222334444332 123333332
Q ss_pred --------CCCEEEEeccCCCCHHHHHHHHHHHHHHHHH
Q psy6547 230 --------SNNIIRLSPALNITEQELREGLDIIINTINT 260 (266)
Q Consensus 230 --------~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~ 260 (266)
..+.+|+|..+. +.+.+++.|+++++.
T Consensus 330 ~~r~~~gi~~~~~R~svGlE----~~~dl~~dl~~al~~ 364 (366)
T PRK08247 330 EIRIANGVCNRLLRFSVGIE----NVEDLIADLKQAFKQ 364 (366)
T ss_pred HHHHhcCCCCCeEEEEeccC----CHHHHHHHHHHHHhh
Confidence 236899995544 566677777777654
No 265
>PRK06460 hypothetical protein; Provisional
Probab=99.64 E-value=5.4e-15 Score=128.71 Aligned_cols=225 Identities=12% Similarity=0.111 Sum_probs=141.9
Q ss_pred CCCCCCceeecCCCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCccc
Q psy6547 14 GPHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLL 93 (266)
Q Consensus 14 ~~~~~~v~~~~~~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~ 93 (266)
...+.+++.++.++.+.+++++ .+++++|+++.++|++|.+. ++++|.++|+++|+++|+||+|... .....
T Consensus 106 ~~~G~~v~~~~~~~~~~l~~~~--~~~tklV~l~sp~NPtG~v~----d~~~I~~la~~~g~~vivDea~~~~-~~~~~- 177 (376)
T PRK06460 106 KNWGVNVDASNPGSDNIIEKAK--SKRYDVVFVENITNPLLRVV----DITELSKVCKENGSILIVDATFSTP-INQKP- 177 (376)
T ss_pred HhhCcEEEEECCCCHHHHHHhc--CCCceEEEEECCCCCCCccc----CHHHHHHHHHHcCCEEEEECCcCcc-ccCCh-
Confidence 3456778888887766676655 45789999999999999886 7789999999999999999999532 11111
Q ss_pred ccccCCCCcCeeeecccccC--CchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHhhccHHHHHHHHHH
Q psy6547 94 AIHYEDVRPDIVILGKALSG--GLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGE 171 (266)
Q Consensus 94 ~~~~~~~~~d~~~~sK~~~~--g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~ 171 (266)
. .++.+..+.++||+++| + .++|++++++++.+.+.........+.++..+..++..++.++ ...+++.++++
T Consensus 178 -l-~~~~divv~S~sK~l~G~~~-~~~G~~~~~~~l~~~l~~~~~~~g~~~~~~~a~~~l~~~~~l~--~r~~~~~~n~~ 252 (376)
T PRK06460 178 -L-ELGADIVVHSASKFLAGHND-VIAGLAAGYGKLLNVIDQMRRTLGTSLDPHAAYLTLRGIKTLK--IRMDVINRNAE 252 (376)
T ss_pred -h-hcCCCEEEeecceeccCCCC-ceEEEEecCHHHHHHHHHHHHhcCCCCCHHHHHHHHhchhhHH--HHHHHHHHHHH
Confidence 1 12334444559999974 3 4689999998888777643333333345544444444444432 34566777778
Q ss_pred HHHHHhhccccc------CCCccc---------EEecCccceeeEEEEeeCccchHHHHHHHHH--HCCc--------ee
Q psy6547 172 IFRSELSSPANK------SKASFK---------LSSGGLKKSINTLILSVSAILEVYDVCIKMK--DAGL--------VT 226 (266)
Q Consensus 172 ~l~~~l~~~~~~------~~~~~~---------~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~--~~gi--------~~ 226 (266)
.+.+.|++ .+. +.++.. ..+.|. ++.|++... .....+|++.|. ..+. +.
T Consensus 253 ~l~~~L~~-~p~v~~v~yp~l~~~p~~~~~~~~~~g~gg---~~s~~~~~~-~~~~~~~~~~l~~~~~~~s~Gg~~sl~~ 327 (376)
T PRK06460 253 QIAEFLEG-HPKVVKVYYPGLKSHVDYEIARRVLKGFGG---VLSFEVNGG-QESALKVMKSLKLIIPAQTLGGVNSVIS 327 (376)
T ss_pred HHHHHHHc-CCCccEEECCCCCCCccHHHHHhhCCCCce---EEEEEEcCc-HHHHHHHHHhCCcceeccCCCCCceEEe
Confidence 88887776 321 222110 124567 999999641 234556666663 1111 11
Q ss_pred ccC-----------------CCCEEEEeccCCCCHHHHHHHHHHHHHHHHH
Q psy6547 227 KPI-----------------SNNIIRLSPALNITEQELREGLDIIINTINT 260 (266)
Q Consensus 227 ~~~-----------------~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~ 260 (266)
.|. ..+.+|+|+.+. |.+.+++.|+++++.
T Consensus 328 ~p~~~~~~~~~~~~~~~~gi~~~liR~svGlE----~~~dl~~dl~~al~~ 374 (376)
T PRK06460 328 HPATMSHRTLSLEERKIVGITDSLLRLSVGIE----DVNDLIEDLDRALST 374 (376)
T ss_pred CccccccccCCHHHHHhcCCCCCeEEEEeccC----CHHHHHHHHHHHHHh
Confidence 110 247899995544 566677777777764
No 266
>PRK08249 cystathionine gamma-synthase; Provisional
Probab=99.63 E-value=9.1e-15 Score=128.03 Aligned_cols=227 Identities=11% Similarity=0.102 Sum_probs=146.9
Q ss_pred CCCCCceeecCCCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCcccc
Q psy6547 15 PHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLA 94 (266)
Q Consensus 15 ~~~~~v~~~~~~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~~ 94 (266)
.++.+++.++..|++++++++ .+++++|+++.++|++|.+. ++++|.++|+++|+++|+|++|..+. .+..
T Consensus 126 ~~Gi~v~~vd~~d~e~l~~~i--~~~tklV~ie~p~NPtg~v~----dl~~I~~la~~~gi~livD~t~a~~~-~~~~-- 196 (398)
T PRK08249 126 RMGVDVTLCETGDHEQIEAEI--AKGCDLLYLETPTNPTLKIV----DIERLAAAAKKVGALVVVDNTFATPI-NQNP-- 196 (398)
T ss_pred hCCeEEEEcCCCCHHHHHHhc--CCCCeEEEEECCCCCCCccC----CHHHHHHHHHHcCCEEEEECCcCccc-cCCc--
Confidence 456778888888999999999 44689999998889999887 79999999999999999999996331 1111
Q ss_pred cccCCCCcCeeeecccccCCchhh-hhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHH
Q psy6547 95 IHYEDVRPDIVILGKALSGGLYPI-SAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIF 173 (266)
Q Consensus 95 ~~~~~~~~d~~~~sK~~~~g~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l 173 (266)
. ..+.+..+.+++|.++|..-++ |++++++++.+.+...........++..+..+...++.+. ...++..+++..+
T Consensus 197 l-~~~~Divv~S~sK~l~g~~~~~gG~vv~~~~l~~~l~~~~~~~g~~~s~~~a~l~l~~l~tL~--~R~~~~~~na~~l 273 (398)
T PRK08249 197 L-ALGADLVIHSATKFLSGHADALGGVVCGSKELMEQVYHYREINGATMDPMSAYLILRGMKTLK--LRVRQQQESAMAL 273 (398)
T ss_pred h-hhCCCEEeccCceecCCCCCceEEEEECCHHHHHHHHHHHHhcCCCCCHHHHHHHHhCcchHH--HHHHHHHHHHHHH
Confidence 1 1333444455889998521344 6677788877766544344445667777777776666543 2345556677777
Q ss_pred HHHhhcccc------cCCCccc---------EEecCccceeeEEEEeeCccchHHHHHHHHH--HCCc-------eec-c
Q psy6547 174 RSELSSPAN------KSKASFK---------LSSGGLKKSINTLILSVSAILEVYDVCIKMK--DAGL-------VTK-P 228 (266)
Q Consensus 174 ~~~l~~~~~------~~~~~~~---------~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~--~~gi-------~~~-~ 228 (266)
.+.|++ .+ .+.+... ..+.|. ++.|++... .....+|++.|. ..+. ++. |
T Consensus 274 a~~L~~-~p~v~~V~yP~l~~~~~~~~~~~~~~g~g~---~~sf~~~~~-~~~~~~f~~~l~l~~~~~s~G~~~sl~~~~ 348 (398)
T PRK08249 274 AKYLQT-HPKVEAVYYPGLETHPNHEIAKAQMRGFGG---ILSFVLKGG-MDTVKRLLPKLRYAHRAANLGAVETIYGPA 348 (398)
T ss_pred HHHHHc-CCCeeEEECCCCCCCccHHHHHhhCCCCCc---eEEEEEcCC-HHHHHHHHHhCCcceEccCCCCCCceeeCC
Confidence 777775 22 1222211 124567 899999641 223556666654 2222 111 1
Q ss_pred C-----------------CCCEEEEeccCCCCHHHHHHHHHHHHHHHHHHh
Q psy6547 229 I-----------------SNNIIRLSPALNITEQELREGLDIIINTINTMA 262 (266)
Q Consensus 229 ~-----------------~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~~ 262 (266)
. ..+.+|+|..+. +.+.+++.|+++++...
T Consensus 349 ~~~~~~~~~~~~~~~~gi~~~liR~svGlE----~~~dl~~dl~~al~~~~ 395 (398)
T PRK08249 349 RTTSHVENTLEERAALGIPEGLVRISVGIE----DTEDLIADLEQAFAHLE 395 (398)
T ss_pred cccccccCCHHHHHhcCCCCCeEEEEeccC----CHHHHHHHHHHHHHHhh
Confidence 0 136899995554 55666777777776543
No 267
>PRK07504 O-succinylhomoserine sulfhydrylase; Reviewed
Probab=99.62 E-value=6.8e-15 Score=128.95 Aligned_cols=224 Identities=14% Similarity=0.132 Sum_probs=142.7
Q ss_pred CCCCCceeecCCCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCcccc
Q psy6547 15 PHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLA 94 (266)
Q Consensus 15 ~~~~~v~~~~~~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~~ 94 (266)
.++.+++.++..|++++++++ .+++++|+++.++|++|.+. ++++|.++|+++|+++|+|++|... .....
T Consensus 127 ~~G~~v~~vd~~d~e~l~~ai--~~~tklV~lesp~NptG~v~----dl~~I~~la~~~gi~lvvD~a~a~~-~~~~~-- 197 (398)
T PRK07504 127 RYGIESTLVDGLDLDNWEKAV--RPNTKVFFLESPTNPTLEVI----DIAAVAKIANQAGAKLVVDNVFATP-LFQKP-- 197 (398)
T ss_pred hcCeEEEEECCCCHHHHHHhc--CcCceEEEEECCCCCCcEec----CHHHHHHHHHHcCCEEEEECCcccc-ccCCc--
Confidence 346678888888999999999 45789999999999999887 7999999999999999999999532 11111
Q ss_pred cccCCCCcCeeeeccccc-CCchhhh-hheecHHhhh-ccCCCCCCCCCCCcHHHHHHHHHHHHHHhhccHHHHHHHHHH
Q psy6547 95 IHYEDVRPDIVILGKALS-GGLYPIS-AVLADDEVMG-TLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGE 171 (266)
Q Consensus 95 ~~~~~~~~d~~~~sK~~~-~g~~~~g-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~ 171 (266)
...+.+..+.+++|.++ .| .++| +++++++.++ .+...........++..++.+...|+.+.. ..++..++..
T Consensus 198 -~~~gaDivv~S~sK~l~g~g-~~~GG~vv~~~~~i~~~~~~~~~~~g~~~s~~~A~~~l~~L~tl~~--R~~~~~~na~ 273 (398)
T PRK07504 198 -LELGAHIVVYSATKHIDGQG-RCLGGVVLSDKAWIEEHLQDYFRHTGPSLSPFNAWTLLKGLETLPV--RVRQQTESAA 273 (398)
T ss_pred -hhhCCCEEEeeccccccCCc-cceEEEEEeCcHHHHHHHHHHHHHhCCCCCHHHHHHHHhccchHHH--HHHHHHHHHH
Confidence 12344444455889998 46 7775 5666666553 233211222335677777777777765432 3444456667
Q ss_pred HHHHHhhcccc------cCCCccc---------EEecCccceeeEEEEeeCccchHHHHHHHHHHCCceec---------
Q psy6547 172 IFRSELSSPAN------KSKASFK---------LSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTK--------- 227 (266)
Q Consensus 172 ~l~~~l~~~~~------~~~~~~~---------~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~--------- 227 (266)
.+.+.|++ .+ .+.+... ..+.|. ++.|++... .....+|++.|.=-.+.+.
T Consensus 274 ~la~~L~~-~p~v~~v~yp~l~~~~~~~~~~~~~~g~g~---~~s~~~~~~-~~~~~~~~~~l~~~~~~~slG~~~sl~~ 348 (398)
T PRK07504 274 AIADFLAG-HPKVARVIYPGRADHPQADIIAKQMTGGST---LVAFELKGG-KEAAFRFLNALKIVRISNNLGDAKSLIT 348 (398)
T ss_pred HHHHHHHc-CCCccEEECCCCCCCccHHHHHHhCCCCcc---EEEEEeCCC-HHHHHHHHHhCCcceecccCCCCCeeee
Confidence 77777765 22 1222221 124477 999999641 2345566666642222111
Q ss_pred -cC-----------------CCCEEEEeccCCCCHHHHHHHHHHHHHHHHH
Q psy6547 228 -PI-----------------SNNIIRLSPALNITEQELREGLDIIINTINT 260 (266)
Q Consensus 228 -~~-----------------~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~ 260 (266)
|. ..+.+|+|..+. +.+.+++.|+.+++.
T Consensus 349 ~p~~~~~~~~~~~~~~~~gi~~~liR~svGlE----~~~dl~~dl~~al~~ 395 (398)
T PRK07504 349 HPATTTHKNLSPEARAELGISEGFLRLSAGLE----DTDDLIEDLAAALKK 395 (398)
T ss_pred CCCCCCcccCCHHHHHhcCCCCCeEEEEeccC----CHHHHHHHHHHHHHh
Confidence 10 236899996655 456667777776654
No 268
>PRK14012 cysteine desulfurase; Provisional
Probab=99.62 E-value=4e-14 Score=124.71 Aligned_cols=225 Identities=13% Similarity=0.135 Sum_probs=139.0
Q ss_pred CCCceeecCC-----CHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCc
Q psy6547 17 MPGYNIIPYN-----DVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGK 91 (266)
Q Consensus 17 ~~~v~~~~~~-----d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~ 91 (266)
+.+++.++.+ |+++|++++ .++++++++..++|++|.+. ++++|.++|+++|+++++|++|+ ++..
T Consensus 118 g~~~~~v~~~~~g~~d~~~l~~~i--~~~t~lv~~~~~~n~tG~~~----~~~~I~~la~~~g~~vivD~a~~-~g~~-- 188 (404)
T PRK14012 118 GFEVTYLDPQSNGIIDLEKLEAAM--RDDTILVSIMHVNNEIGVIQ----DIAAIGEICRERGIIFHVDAAQS-VGKV-- 188 (404)
T ss_pred CCEEEEEccCCCCcCCHHHHHHhc--CCCCEEEEEECcCCCccchh----hHHHHHHHHHHcCCEEEEEcchh-cCCc--
Confidence 4566666542 799999999 44688999999999999887 89999999999999999999995 3211
Q ss_pred ccccccCCCCcCeeeec--ccccCCchhhhhheecHHhhhccCCCCC-------CCCCCCcHHHHHHHHHHHHHHhh--c
Q psy6547 92 LLAIHYEDVRPDIVILG--KALSGGLYPISAVLADDEVMGTLVPGTH-------GSTYGGNPLACKLAMTALDVILE--E 160 (266)
Q Consensus 92 ~~~~~~~~~~~d~~~~s--K~~~~g~~~~g~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~a~~~~l~~~~~--~ 160 (266)
.+... ...+|+.++| |.+++ .+.|+++.+++....+.+... ....+.+.....+..++++.... +
T Consensus 189 ~~~~~--~~~~D~~~~s~~K~~gp--~g~G~l~~~~~~~~~~~~~~~g~~~~~~~~~gt~~~~~~~~l~~al~~~~~~~~ 264 (404)
T PRK14012 189 PIDLS--KLKVDLMSFSAHKIYGP--KGIGALYVRRKPRVRLEAQMHGGGHERGMRSGTLPTHQIVGMGEAARIAKEEMA 264 (404)
T ss_pred ccCcc--cCCCCEEEEehhhccCC--CceEEEEEecCCCCCCCceecCCCccCCccCCCcCHHHHHHHHHHHHHHHhhHH
Confidence 11222 2356777655 97763 247888777654333332111 11112333344444455554432 3
Q ss_pred cHHHHHHHHHHHHHHHhhccccc-CCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceec----cC------
Q psy6547 161 NMIENAYKMGEIFRSELSSPANK-SKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTK----PI------ 229 (266)
Q Consensus 161 ~~~~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~----~~------ 229 (266)
+..++.+++.+++.+.|++ +.. ............ +..++|...+ ..++...|.+.+|-.. +.
T Consensus 265 ~~~~~~~~l~~~l~~~L~~-~~~i~~~~~~~~~~~~-~~~~~~~~~~-----~~~~~~~l~~~~i~~g~~~~~~~~~~~~ 337 (404)
T PRK14012 265 TENERIRALRDRLWNGIKD-IEEVYLNGDLEQRVPG-NLNVSFNYVE-----GESLIMALKDLAVSSGSACTSASLEPSY 337 (404)
T ss_pred HHHHHHHHHHHHHHHHHhc-CCCEEEeCCccccCCC-EEEEEEeCcC-----HHHHHHhCCCeEEEchhhhCCCCCCCCH
Confidence 4667778888888888876 432 111110101111 0134444333 3456666643222211 11
Q ss_pred -----------CCCEEEEeccCCCCHHHHHHHHHHHHHHHHHH
Q psy6547 230 -----------SNNIIRLSPALNITEQELREGLDIIINTINTM 261 (266)
Q Consensus 230 -----------~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~ 261 (266)
..+.+|++++..+|++|++++++.|+++++.+
T Consensus 338 ~~~~~~~~~~~~~~~iRls~~~~~t~~dvd~~~~~l~~~~~~~ 380 (404)
T PRK14012 338 VLRALGLNDELAHSSIRFSLGRFTTEEEIDYAIELVRKSIGKL 380 (404)
T ss_pred HHHHcCCChhhcCceEEEEecCCCCHHHHHHHHHHHHHHHHHH
Confidence 13789999999999999999999999988764
No 269
>PLN03226 serine hydroxymethyltransferase; Provisional
Probab=99.62 E-value=1.2e-13 Score=123.28 Aligned_cols=221 Identities=13% Similarity=0.061 Sum_probs=145.4
Q ss_pred eecCC------CHHHHHHHHhcCCCEEEEEE-ccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCcc-c
Q psy6547 22 IIPYN------DVDALEAKLKSNPNICAFMV-EPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKL-L 93 (266)
Q Consensus 22 ~~~~~------d~~~l~~~l~~~~~~~~i~~-~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~-~ 93 (266)
.++++ |+++|++++++. ++++|++ +++ .|... ++++|+++|+++|+++++|++|. +|..+.. .
T Consensus 160 ~y~~~~~~g~iD~d~Le~~l~~~-~pklIv~~~S~---~s~~~----D~a~i~~ia~~~ga~LlvD~AH~-~Gli~~~~~ 230 (475)
T PLN03226 160 PYRLDESTGLIDYDKLEKKAMLF-RPKLIIAGASA---YPRDW----DYARMRKIADKVGALLMCDMAHI-SGLVAAQEA 230 (475)
T ss_pred eeeecCCCCCcCHHHHHHHHhhc-CCeEEEEecCc---CCCcc----CHHHHHHHHHHcCCEEEEEchhh-hCcccCCCC
Confidence 45567 999999999654 4566666 333 34443 78899999999999999999993 2222211 1
Q ss_pred ccccCCCCcCeeeecccccCCchhhhhheecHHhh-----------h---ccCCC-CCCCCCCCcHHHHHHHHHHHHHHh
Q psy6547 94 AIHYEDVRPDIVILGKALSGGLYPISAVLADDEVM-----------G---TLVPG-THGSTYGGNPLACKLAMTALDVIL 158 (266)
Q Consensus 94 ~~~~~~~~~d~~~~sK~~~~g~~~~g~~~~~~~~~-----------~---~~~~~-~~~~~~~~~~~~~~a~~~~l~~~~ 158 (266)
.....+.+.-+.+++|+|.|. +.|+++++++.. + .+... .....-++++...++..++++.+.
T Consensus 231 ~~p~~~~Div~~t~hK~L~GP--~Gg~I~~~~~~~~~~~~g~~~~~d~~~~i~~a~~~~~~g~p~~~~iaal~aAl~~i~ 308 (475)
T PLN03226 231 ASPFEYCDVVTTTTHKSLRGP--RGGMIFFRKGPKPPKGQGEGAVYDYEDKINFAVFPGLQGGPHNHTIAALAVALKQAM 308 (475)
T ss_pred CCCCCCCeEEEecCcccccCC--CceEEEEchhhcccccCCCccHHHHHHHhccccCCccCCCchHHHHHHHHHHHHHHh
Confidence 111113333334488999764 357777776533 1 11111 111222345666777778888886
Q ss_pred hc---cHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccC------
Q psy6547 159 EE---NMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPI------ 229 (266)
Q Consensus 159 ~~---~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~------ 229 (266)
.. .+.+++.++.+++++.|.+ .+...+. .+.+++++.+++... +.+..++.+.|.+.||.+...
T Consensus 309 ~~~~~~~~~~~~~na~~L~~~L~~-~G~~l~~-----~~t~~hi~lv~~~~~-gi~~~~~~~~L~~~~I~~nk~~~p~~~ 381 (475)
T PLN03226 309 TPEFKAYQKQVKANAAALANRLMS-KGYKLVT-----GGTDNHLVLWDLRPL-GLTGSRVEKVLDLAHITLNKNAVPGDS 381 (475)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHh-CCCEEEc-----CCCCCCEEEEEccCC-CCCHHHHHHHHHHCCCEECCCCCCCCc
Confidence 54 4788999999999999887 5432222 122334777777331 567788999999999998642
Q ss_pred ---CCCEEEE----eccCCCCHHHHHHHHHHHHHHHHH
Q psy6547 230 ---SNNIIRL----SPALNITEQELREGLDIIINTINT 260 (266)
Q Consensus 230 ---~~~~iR~----~~~~~~t~~~i~~~~~~l~~~~~~ 260 (266)
.+..+|+ ..+..++++|++++.+.|.++++.
T Consensus 382 ~~~~~~giRiGt~~lt~~g~~~~d~~~ia~~i~~~~~~ 419 (475)
T PLN03226 382 SALVPGGVRIGTPAMTSRGLVEKDFEKVAEFLHRAVTI 419 (475)
T ss_pred ccCCCCCcccCcHHHHHCCCCHHHHHHHHHHHHHHHHH
Confidence 3567898 345789999999999999998874
No 270
>PRK07810 O-succinylhomoserine sulfhydrylase; Provisional
Probab=99.62 E-value=1.2e-14 Score=127.57 Aligned_cols=224 Identities=16% Similarity=0.155 Sum_probs=140.5
Q ss_pred CCCCCCceeecCCCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCccc
Q psy6547 14 GPHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLL 93 (266)
Q Consensus 14 ~~~~~~v~~~~~~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~ 93 (266)
..++.+++.++.+|++++++++ .+++++|+++.+.|++|.+. ++++|.++|+++|+++|+|++|... ....+
T Consensus 131 ~~~G~~v~~vd~~d~~~l~~ai--~~~tklV~~esp~Nptg~v~----dl~~I~~la~~~g~~vivD~a~a~~-~~~~~- 202 (403)
T PRK07810 131 PRWGVETVFVDGEDLSQWEEAL--SVPTQAVFFETPSNPMQSLV----DIAAVSELAHAAGAKVVLDNVFATP-LLQRG- 202 (403)
T ss_pred HHcCcEEEEECCCCHHHHHHhc--CcCceEEEEECCCCCCCeec----CHHHHHHHHHHcCCEEEEECCCCcc-ccCCh-
Confidence 4468899999999999999999 45789999999999999887 8999999999999999999999421 11111
Q ss_pred ccccCCCCcCeeeecccccC-Cchhh-hhheecHHhhh-ccCCCCCCCCCCCcHHHHHHHHHHHHHHhhccHHHHHHHHH
Q psy6547 94 AIHYEDVRPDIVILGKALSG-GLYPI-SAVLADDEVMG-TLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMG 170 (266)
Q Consensus 94 ~~~~~~~~~d~~~~sK~~~~-g~~~~-g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~ 170 (266)
. ..|.+..+.+++|.++| | .++ |+++++++.+. .++..........++..++.+...|+.+. ...++..++.
T Consensus 203 -~-~~gaDivv~S~tK~l~g~g-~~~gG~v~~~~~~~~~~l~~~~~~~g~~~s~~~a~l~l~~L~tl~--~R~~~~~~~a 277 (403)
T PRK07810 203 -L-PLGADVVVYSGTKHIDGQG-RVLGGAILGDREYIDGPVQKLMRHTGPALSAFNAWVLLKGLETLA--LRVRHSNASA 277 (403)
T ss_pred -h-hcCCcEEEccCCceecCCc-CceeEEEEeChHHHHHHHHHHHHHhCCCCCHHHHHHHHhccCcHH--HHHHHHHHHH
Confidence 1 23444444458899985 5 555 77777776543 23322122233567777777776665442 2345555566
Q ss_pred HHHHHHhhccccc------CCCccc---------EEecCccceeeEEEEeeC---ccchHHHHHHHHH--H--------C
Q psy6547 171 EIFRSELSSPANK------SKASFK---------LSSGGLKKSINTLILSVS---AILEVYDVCIKMK--D--------A 222 (266)
Q Consensus 171 ~~l~~~l~~~~~~------~~~~~~---------~~~~g~~~~~~~~~~~~~---~~~~~~~~~~~l~--~--------~ 222 (266)
..+.+.|++ .+. +.+... ..+.|. ++.|++... +...+.+|++.|+ . +
T Consensus 278 ~~~a~~L~~-~p~v~~V~yP~l~~~p~~~~~~~~~~g~g~---~~s~~l~~~~~~~~~~~~~f~~~l~l~~~~~slG~~~ 353 (403)
T PRK07810 278 LRIAEFLEG-HPAVRWVRYPFLPSHPQYDLAKRQMSGGGT---VVTFELDAPEDAAKKRAFEVLDKLRVIDISNNLGDAK 353 (403)
T ss_pred HHHHHHHhc-CCCccEEECCCCCCCccHHHHHhhCCCCce---EEEEEEcCCCCcCHHHHHHHHHhCCceEEeccCCCCc
Confidence 666666665 221 222111 124567 899998641 1123455666443 1 1
Q ss_pred CceeccC-----------------CCCEEEEeccCCCCHHHHHHHHHHHHHHH
Q psy6547 223 GLVTKPI-----------------SNNIIRLSPALNITEQELREGLDIIINTI 258 (266)
Q Consensus 223 gi~~~~~-----------------~~~~iR~~~~~~~t~~~i~~~~~~l~~~~ 258 (266)
.++..|. ..+.+|+|..+. +.+.+++.|++++
T Consensus 354 sl~~~p~~~~h~~~~~~~~~~~gi~~~lvR~svGlE----~~~dli~dl~~Al 402 (403)
T PRK07810 354 SLITHPATTTHRAMGPEGRAAIGLGDGVVRLSVGLE----DTDDLIADLDRAL 402 (403)
T ss_pred ceeeCCCccccccCCHHHHHhcCCCCCeEEEEeccC----CHHHHHHHHHHhh
Confidence 2222221 236799995544 4566666666654
No 271
>cd00616 AHBA_syn 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn). AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary metabolites. Some well studied proteins in this CD are AHBA_synthase, protein product of pleiotropic regulatory gene degT, Arnb aminotransferase and pilin glycosylation protein. The prototype of this family, the AHBA_synthase, is a dimeric PLP dependent enzyme. AHBA_syn is the terminal enzyme of 3-amino-5-hydroxybenzoic acid (AHBA) formation which is involved in the biosynthesis of ansamycin antibiotics, including rifamycin B. Some members of this CD are involved in 4-amino-6-deoxy-monosaccharide D-perosamine synthesis. Perosamine is an important element in the glycosylation of several cell products, such as antibiotics and lipopolysaccharides of gram-positive and gram-negative bacteria. The pilin glycosylation protein
Probab=99.62 E-value=2.3e-14 Score=123.86 Aligned_cols=219 Identities=16% Similarity=0.184 Sum_probs=139.0
Q ss_pred CCCCceeecC------CCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCc
Q psy6547 16 HMPGYNIIPY------NDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRT 89 (266)
Q Consensus 16 ~~~~v~~~~~------~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~ 89 (266)
.+.+++.++. .|++++++.+ .+++++|++++ ++|... ++++|.++|+++|+++|+|++|+ ++..
T Consensus 78 ~g~~~~~~~~~~~~~~~d~~~l~~~i--~~~~~~v~~~~---~~G~~~----~~~~i~~l~~~~~i~li~D~a~~-~g~~ 147 (352)
T cd00616 78 LGATPVFVDIDPDTYNIDPELIEAAI--TPRTKAIIPVH---LYGNPA----DMDAIMAIAKRHGLPVIEDAAQA-LGAT 147 (352)
T ss_pred cCCeEEEEecCCCcCCcCHHHHHHhc--CcCCeEEEEEC---CCCCcC----CHHHHHHHHHHcCCeEEEECCCC-CCCe
Confidence 3445555543 2689999988 45688888764 356554 79999999999999999999995 2211
Q ss_pred CcccccccCCCCcCeeeec----ccccCCchhhhhheec-HHhhhccCCC----C-----------CCCCCCCcHHHHHH
Q psy6547 90 GKLLAIHYEDVRPDIVILG----KALSGGLYPISAVLAD-DEVMGTLVPG----T-----------HGSTYGGNPLACKL 149 (266)
Q Consensus 90 g~~~~~~~~~~~~d~~~~s----K~~~~g~~~~g~~~~~-~~~~~~~~~~----~-----------~~~~~~~~~~~~~a 149 (266)
+.....+...|+.++| |++++| +.|+++.+ +++.+.++.. . ...++..+++.++.
T Consensus 148 ---~~~~~~~~~~d~~~~S~~~~K~~~~~--~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~ 222 (352)
T cd00616 148 ---YKGRKVGTFGDAGAFSFHPTKNLTTG--EGGAVVTNDEELAERARLLRNHGRDRDRFKYEHEILGYNYRLSEIQAAI 222 (352)
T ss_pred ---ECCEEcccCcceeEEcCCCCCCCccc--CceEEEECCHHHHHHHHHHHHcCCCCCCCccccceeeeccCcCHHHHHH
Confidence 1111122224555555 999654 46767664 4665544321 0 01123455555555
Q ss_pred HHHHHHHHhhccHHHHHHHHHHHHHHHhhccccc-CCCcccE--EecCccceeeEEEEeeCccchHHHHHHHHHHCCcee
Q psy6547 150 AMTALDVILEENMIENAYKMGEIFRSELSSPANK-SKASFKL--SSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVT 226 (266)
Q Consensus 150 ~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~~~~~~~--~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~ 226 (266)
+...++.+ ++..++.+++.+++++.|.+ +.. ..+.... ..... ++.+.+.+..+.+..++.+.|.++||.+
T Consensus 223 ~~~~l~~~--~~~~~~~~~~~~~~~~~L~~-~~g~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~v~~~L~~~gI~~ 296 (352)
T cd00616 223 GLAQLEKL--DEIIARRREIAERYKELLAD-LPGIRLPDVPPGVKHSYH---LYVIRLDPEAGESRDELIEALKEAGIET 296 (352)
T ss_pred HHHHHHhh--HHHHHHHHHHHHHHHHHhcC-CCCccCCCCCCCCceeeE---EEEEEECCcCCCCHHHHHHHHHHCCCCe
Confidence 55544433 45677888899999999987 432 2222101 11222 6666665311347889999999999976
Q ss_pred ccCC---------------------------CCEEEEeccCCCCHHHHHHHHHHHH
Q psy6547 227 KPIS---------------------------NNIIRLSPALNITEQELREGLDIII 255 (266)
Q Consensus 227 ~~~~---------------------------~~~iR~~~~~~~t~~~i~~~~~~l~ 255 (266)
.... .+.+|++++..+|++|++++++.|+
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~l~~~~~~t~~di~~i~~~l~ 352 (352)
T cd00616 297 RVHYPPLHHQPPYKKLLGYPPGDLPNAEDLAERVLSLPLHPSLTEEEIDRVIEALR 352 (352)
T ss_pred eeecCccccCHhhhhccCCCcCCChHHHHHHhCeEEccCCCCCCHHHHHHHHHHhC
Confidence 5210 1579999999999999999998874
No 272
>cd00617 Tnase_like Tryptophanase family (Tnase). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to tryptophanase (Tnase) and tyrosine phenol-lyase (TPL). Tnase and TPL are active as tetramers and catalyze beta-elimination reactions. Tnase catalyzes degradation of L-tryptophan to yield indole, pyruvate and ammonia and TPL catalyzes degradation of L-tyrosine to yield phenol, pyruvate and ammonia.
Probab=99.60 E-value=3.5e-14 Score=124.86 Aligned_cols=227 Identities=15% Similarity=0.149 Sum_probs=139.5
Q ss_pred CCHHHHHHHHhcC--CCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccC----cC--C-cCcccccc
Q psy6547 26 NDVDALEAKLKSN--PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTG----LG--R-TGKLLAIH 96 (266)
Q Consensus 26 ~d~~~l~~~l~~~--~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~----~~--~-~g~~~~~~ 96 (266)
.|+++|++.+.+. +++++|+++.++|++|..+++.+.+++|.++|++||++||.|+++.. |. + .|.. ...
T Consensus 136 iD~e~Le~~I~~~~~~~~~~I~v~~p~N~~gG~~~s~~~l~~i~eia~~~gi~li~DaAr~~~na~~i~~r~~g~~-~~s 214 (431)
T cd00617 136 IDVAKLEKLIDEVGAENIPYIVLTITNNTAGGQPVSMANLREVRELAHKYGIPVVLDAARFAENAYFIKEREEGYR-DKS 214 (431)
T ss_pred cCHHHHHHHhCcccCCCccEEEEECCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEEchhhHhhhhhhhccccccc-CCC
Confidence 3899999999543 24888998877777644558999999999999999999999999731 10 0 0110 000
Q ss_pred cCCCCcCeeeeccccc-CCchh------hhhheecH-HhhhccCCC----CCCCCCCC-cHHHHHHHHHHHHHHhhccHH
Q psy6547 97 YEDVRPDIVILGKALS-GGLYP------ISAVLADD-EVMGTLVPG----THGSTYGG-NPLACKLAMTALDVILEENMI 163 (266)
Q Consensus 97 ~~~~~~d~~~~sK~~~-~g~~~------~g~~~~~~-~~~~~~~~~----~~~~~~~~-~~~~~~a~~~~l~~~~~~~~~ 163 (266)
...+...+.++||.+. +| ++ .||++++. ++.+.++.. ....++++ +.--+++...+|+.....++.
T Consensus 215 i~ei~~e~~s~sd~~~mS~-~K~~~~~~GG~i~~~d~~l~~~~~~~~~~~~~~~~~gG~~~r~~~A~A~gL~e~~~~~~l 293 (431)
T cd00617 215 IAEIAREMFSYADGCTMSA-KKDGLVNIGGFLALRDDELYEEARQRVVLYEGFVTYGGMAGRDMEALAQGLREAVEEDYL 293 (431)
T ss_pred HHHHHHHhhccCCEEEEEe-ecCCCCccceEEEeCcHHHHHHHHHhccccCCccccccccHHHHHHHHHHHHhcccHHHH
Confidence 0011112223444333 22 32 55788876 577776532 11222222 222233333356543223445
Q ss_pred HHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeC------ccchHHHHHHHHH-HCCceecc-C------
Q psy6547 164 ENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVS------AILEVYDVCIKMK-DAGLVTKP-I------ 229 (266)
Q Consensus 164 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~------~~~~~~~~~~~l~-~~gi~~~~-~------ 229 (266)
++..+.++++.+.|++ .+.+.. .+..|+ +++++...- +..++.+|+.+|. +.||.+.- +
T Consensus 294 ~~~~~~r~~l~~~L~~-~G~~v~---~P~Ggh---~v~~d~~~~~~~~~~~~~~~~~la~~L~~e~gV~~~~~g~~~~~~ 366 (431)
T cd00617 294 RHRVEQVRYLGDRLDE-AGVPIV---EPAGGH---AVFIDAREFLPHIPQEQFPAQALAAELYLEAGVRAVELGIFSAGR 366 (431)
T ss_pred HHHHHHHHHHHHHHHH-CCCCcc---CCCcce---EEEEEhHHhcCCCCcccCcHHHHHHHHHHHcCeeEEeecceeccc
Confidence 5555566888899888 554322 234566 788886631 1235888987765 66787532 0
Q ss_pred ----------CCCEEEEeccC-CCCHHHHHHHHHHHHHHHHHH
Q psy6547 230 ----------SNNIIRLSPAL-NITEQELREGLDIIINTINTM 261 (266)
Q Consensus 230 ----------~~~~iR~~~~~-~~t~~~i~~~~~~l~~~~~~~ 261 (266)
..+.+|++.+- ..|.++++.+.++|.+..++.
T Consensus 367 ~~~~~~~~~~~~~~~rl~~prr~~t~~~~~~~~~~~~~~~~~~ 409 (431)
T cd00617 367 DPNTGENKYPELELVRLAIPRRVYTQDHMDYVAAAVIALYERR 409 (431)
T ss_pred CCCCCcccCCccceeEEeccccccCHHHHHHHHHHHHHHHhhH
Confidence 13789998774 779999999999999987764
No 273
>PRK06234 methionine gamma-lyase; Provisional
Probab=99.60 E-value=3.8e-14 Score=124.41 Aligned_cols=225 Identities=15% Similarity=0.103 Sum_probs=146.3
Q ss_pred CCCCCCceeecCCCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhc--CCEEEEeccccCcCCcCc
Q psy6547 14 GPHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQY--NVLFIADEVQTGLGRTGK 91 (266)
Q Consensus 14 ~~~~~~v~~~~~~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~--g~~li~De~~~~~~~~g~ 91 (266)
..++.+++.++..|++++++.+ .+++++|+++.++|++|.+. ++++|.++|+++ |+++|+||+|... ..+.
T Consensus 125 ~~~G~~v~~vd~~d~e~l~~~i--~~~tklI~iesP~NPtG~v~----dl~~I~~la~~~~~~i~livDea~~~~-~~~~ 197 (400)
T PRK06234 125 TRYGVEVTFVDTSNLEEVRNAL--KANTKVVYLETPANPTLKVT----DIKAISNIAHENNKECLVFVDNTFCTP-YIQR 197 (400)
T ss_pred hhCCeEEEEECCCCHHHHHHHh--ccCCeEEEEECCCCCCCCcC----CHHHHHHHHHhcCCCCEEEEECCCCch-hcCC
Confidence 4467888999999999999999 45689999999999999887 799999999997 9999999999532 1122
Q ss_pred ccccccCCCCcCeeeecccccC-Cchhh-hhheecHHhhhccCCC--CCCCCCCCcHHHHHHHHHHHHHHhhccHHHHHH
Q psy6547 92 LLAIHYEDVRPDIVILGKALSG-GLYPI-SAVLADDEVMGTLVPG--THGSTYGGNPLACKLAMTALDVILEENMIENAY 167 (266)
Q Consensus 92 ~~~~~~~~~~~d~~~~sK~~~~-g~~~~-g~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~ 167 (266)
.. ..+.+..+.+++|.+++ | .++ ||+++++++.+.++.. ........++..+..+...|+.+ +...++..
T Consensus 198 ~l---~~g~Divv~S~sK~l~g~g-~~~gG~v~~~~~~~~~l~~~~~~~~~g~~l~p~~a~l~~~~l~tl--~~r~~~~~ 271 (400)
T PRK06234 198 PL---QLGADVVVHSATKYLNGHG-DVIAGFVVGKEEFINQVKLFGIKDMTGSVIGPFEAFLIIRGMKTL--QIRMEKHC 271 (400)
T ss_pred ch---hhCCcEEEeeccccccCCC-CceeEEEEecHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhccCcH--HHHHHHHH
Confidence 11 22444445558899984 5 554 8899998887776531 11223456777666666655432 22344555
Q ss_pred HHHHHHHHHhhcccc------cCCCccc---------EEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccC---
Q psy6547 168 KMGEIFRSELSSPAN------KSKASFK---------LSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPI--- 229 (266)
Q Consensus 168 ~~~~~l~~~l~~~~~------~~~~~~~---------~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~--- 229 (266)
++...+.+.|++ .+ .+.+... ..+.|. ++.|++... .....+|++.|.--++.+..+
T Consensus 272 ~na~~~a~~L~~-~~~V~~V~~p~l~~~~~~~~~~~~~~~~g~---l~s~~l~~~-~~~~~~f~~~l~~~~~~~s~G~~~ 346 (400)
T PRK06234 272 KNAMKVAKFLES-HPAVEKVYYPGLESFEYYELAKKQMSLPGA---MISFELKGG-VEEGKVVMNNVKLATLAVSLGDAE 346 (400)
T ss_pred HHHHHHHHHHHc-CCCeeEEECCCCCCCCcHHHHHHhCCCCCc---eEEEEecCc-HHHHHHHHHhCCcceEeccCCCCC
Confidence 666667777765 22 1222110 124566 899998641 234567777776444332211
Q ss_pred ------------------------CCCEEEEeccCCCCHHHHHHHHHHHHHHHHH
Q psy6547 230 ------------------------SNNIIRLSPALNITEQELREGLDIIINTINT 260 (266)
Q Consensus 230 ------------------------~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~ 260 (266)
..+.+|+|+.+. +.+.+++.|.++++.
T Consensus 347 sl~~~p~~~~~~~~~~~~~~~~gi~~~l~R~svGlE----~~~dl~~dl~~al~~ 397 (400)
T PRK06234 347 TLIQHPASMTHSPYTAEERKEAGISDGLVRLSVGLE----DVDDIIADLKQALDL 397 (400)
T ss_pred ceecCCccCCCCCCCHHHHHhcCCCCCeEEEEeCCC----CHHHHHHHHHHHHHH
Confidence 236899996655 455556666666654
No 274
>PF12897 Aminotran_MocR: Alanine-glyoxylate amino-transferase; InterPro: IPR024551 This entry represents a family of putative aminotransferases.; PDB: 3D6K_C 3EZ1_A 3PPL_B.
Probab=99.59 E-value=2.5e-14 Score=119.82 Aligned_cols=243 Identities=15% Similarity=0.150 Sum_probs=145.2
Q ss_pred cCccccc---CCCCCCceeecC----CCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHH-HHhcCCEEE
Q psy6547 7 PTSYNEF---GPHMPGYNIIPY----NDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRAL-CSQYNVLFI 78 (266)
Q Consensus 7 ~~~~~~~---~~~~~~v~~~~~----~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l-~~~~g~~li 78 (266)
|++.++| +.++-+.+.||. +|+|.+|+++++++.+|+|.|.|.++|+..+++|.+..++++++ +...+..|+
T Consensus 132 PGYDRHFai~E~~Giemi~VpM~~dGPDmD~Ve~LV~~D~svKGiWcVP~ySNPtG~tySde~vrrlA~m~~AA~DFRI~ 211 (425)
T PF12897_consen 132 PGYDRHFAITEHFGIEMIPVPMTEDGPDMDMVEELVAEDPSVKGIWCVPKYSNPTGITYSDEVVRRLAAMKTAAPDFRIF 211 (425)
T ss_dssp S--HHHHHHHHHCT-EEEEEEEETTEE-HHHHHHHTHTSTTEEEEEE-SSS-TTT-----HHHHHHHHHS--SSTT-EEE
T ss_pred CCchHHHHHHHhhCcEEEecCCCCCCCCHHHHHHHHhcCCccceEEeCCCccCCCCccCCHHHHHHHhcCCcCCcCeEEE
Confidence 4455555 566777778875 38999999998899999999999877766666999999999999 446899999
Q ss_pred EeccccC--cCCcCc-cc------ccccCC---CCcCeeeecccccCCchhhhhheecHHhhhccCCCCCCCCCCCcHHH
Q psy6547 79 ADEVQTG--LGRTGK-LL------AIHYED---VRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLA 146 (266)
Q Consensus 79 ~De~~~~--~~~~g~-~~------~~~~~~---~~~d~~~~sK~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (266)
.|++|+= +..... .. .....| ....+.+.||.--+| -.++++.++++.++.+.......+.+..-+.
T Consensus 212 WDNAY~vHhL~~~~~~~~~~nil~~~~~AGnpdrv~~F~STSKITf~G-aGva~~aaS~~Nl~~~~~~~~~~tIgpdKvN 290 (425)
T PF12897_consen 212 WDNAYAVHHLYDEEPRDALLNILDACAKAGNPDRVYVFASTSKITFPG-AGVAFFAASEANLAWIKKHLSVQTIGPDKVN 290 (425)
T ss_dssp EE-TTTT-BSSSSSS------HHHHHHHTT-TTSEEEEEESTTTS-TT-SS-EEEEE-HHHHHHHHHHHHHH-S---HHH
T ss_pred eecCceEeeccccccchhhhHHHHHHHHcCCCCeEEEEecccccccCC-cceeeeecCHHHHHHHHHHhcCceeCccHHH
Confidence 9999931 211111 10 011122 233455588965555 5699999999888877755556666667777
Q ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHHHhh-------cccc-c-CCCcccEEecCccceeeEEEEeeCccchHHHHHH
Q psy6547 147 CKLAMTALDVILEENMIENAYKMGEIFRSELS-------SPAN-K-SKASFKLSSGGLKKSINTLILSVSAILEVYDVCI 217 (266)
Q Consensus 147 ~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~-------~~~~-~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 217 (266)
|......+...+ .++.+|.++.++.++-+++ +-++ . ....+..+..|- |++++..+ + .++.+++
T Consensus 291 QLRHvrff~d~~-gGv~aHM~kHa~il~PKF~~V~~~L~~~L~~~~~ia~Wt~P~GGY---FIsld~~~--G-~AkrvV~ 363 (425)
T PF12897_consen 291 QLRHVRFFKDAE-GGVRAHMRKHAAILRPKFEAVLEILEEELGDGLGIASWTKPKGGY---FISLDVLD--G-TAKRVVE 363 (425)
T ss_dssp HHHHHHHHHSHH-THHHHHHHHHHHHHHHHHHHHHHHHHHHHGTGGTSEEE---SBSS----EEEEEST--T--HHHHHH
T ss_pred HHHHHHHhcChh-hHHHHHHHHHHHHHhhhHHHHHHHHHHhcCCCCCeeEecCCCCce---EEEEecCC--C-hHHHHHH
Confidence 766655444321 2677777776666654333 2233 2 233443455677 89999887 3 4889999
Q ss_pred HHHHCCceeccCC----------CCEEEEeccCCCCHHHHHHHHHHHHHHH
Q psy6547 218 KMKDAGLVTKPIS----------NNIIRLSPALNITEQELREGLDIIINTI 258 (266)
Q Consensus 218 ~l~~~gi~~~~~~----------~~~iR~~~~~~~t~~~i~~~~~~l~~~~ 258 (266)
.+++.||.+++.+ ...||++|++- +.++++.+++.+.-.+
T Consensus 364 lakeAGV~LT~AGAtfPyg~DP~D~nIRiAPS~P-~leel~~Am~~~~~cv 413 (425)
T PF12897_consen 364 LAKEAGVALTPAGATFPYGKDPRDSNIRIAPSYP-SLEELETAMDVFATCV 413 (425)
T ss_dssp HHHHTTEE---TTTTSGGG--TTS-EEEE--SSS--HHHHHHHHHHHHHHH
T ss_pred HHHHhCceeCCCCCCCCCCCCCCCCcEEecCCCC-CHHHHHHHHHHHHHHH
Confidence 9999999999742 36899999976 8999999999887554
No 275
>TIGR01366 serC_3 phosphoserine aminotransferase, putative. This model represents a putative variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in Mycobacterium tuberculosis and related high-GC Gram-positive bacteria.
Probab=99.59 E-value=4.6e-14 Score=122.26 Aligned_cols=219 Identities=11% Similarity=0.081 Sum_probs=145.4
Q ss_pred CceeecCCCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCcccccccC
Q psy6547 19 GYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYE 98 (266)
Q Consensus 19 ~v~~~~~~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~~~~~~ 98 (266)
++..++.+..++++..+ ++++++|.+++..+.+|.+. ++++| ++++|+++++|-+++ ++ +....++
T Consensus 109 ~~~~~~~~~~~~~~~~~--~~~~~lV~~~h~et~tG~~~----pi~~I---~~~~g~~~iVDavqs-~g--~~~idv~-- 174 (361)
T TIGR01366 109 EPIIVTADPGSAPEPQA--DPGVDVIAWAHNETSTGVAV----PVRRP---EGSDDALVVIDATSG-AG--GLPVDIA-- 174 (361)
T ss_pred CceEEecCCCCCCCCcc--CCCCCEEEEcccCCccceec----ccccc---cccCCCeEEEEcCcc-cc--CCCCCHH--
Confidence 45555543333344333 55899999999999999986 66666 589999999999995 32 1222333
Q ss_pred CCCcCeee--ecccccCCchhhhhheecHHhhhccCCCC---------------------CCCCCCCcHHHHHHHHHHHH
Q psy6547 99 DVRPDIVI--LGKALSGGLYPISAVLADDEVMGTLVPGT---------------------HGSTYGGNPLACKLAMTALD 155 (266)
Q Consensus 99 ~~~~d~~~--~sK~~~~g~~~~g~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~a~~~~l~ 155 (266)
. .|+++ ..|++++. -.++++..++++++.++... ....++++.....+..++++
T Consensus 175 ~--~D~~~~s~~K~lg~~-~Gl~~~~~s~~~~~~~~~~~~~~~~~p~~~d~~~~~~~~~~~~t~~tp~i~~i~~l~~al~ 251 (361)
T TIGR01366 175 E--TDVYYFAPQKNFASD-GGLWLAIMSPAALERIEAIAASGRWVPEFLSLPTAVDNSLKNQTYNTPAIATLALLAEQID 251 (361)
T ss_pred H--CCEEEEEchhhcCCC-CceEEEEECHHHHhhhhcccCCCCCCchhhhHHHHHhccccCCCCCCchHHHHHHHHHHHH
Confidence 2 46555 44999843 12555566887776654211 11223344444557778888
Q ss_pred HHhhc----cHHHHHHHHHHHHHHHhhccccc-CCCcccE-EecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccC
Q psy6547 156 VILEE----NMIENAYKMGEIFRSELSSPANK-SKASFKL-SSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPI 229 (266)
Q Consensus 156 ~~~~~----~~~~~~~~~~~~l~~~l~~~~~~-~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~ 229 (266)
.+.++ ...++.+++.+++++.+.+ ++. ..+.... ..... +..+.+++ +.++.++.+.|.++||.+.++
T Consensus 252 ~l~~~gg~e~~~~r~~~l~~~l~~~l~~-~~~~~~~~~~~~~~s~~---v~~v~~~~--g~~~~~v~~~L~~~gI~i~~~ 325 (361)
T TIGR01366 252 WMNGNGGLDWAVARTADSSSRLYSWAQE-RPYATPFVTDPGKRSQV---VGTIDFVD--DIDAATVAKILRANGIVDTEP 325 (361)
T ss_pred HHHHccCHHHHHHHHHHHHHHHHHHHHh-CCCcccCCCChhhcccc---eEEEECCC--ccCHHHHHHHHHHCCCeeccC
Confidence 87654 3567778888889988888 553 2221101 11122 23344444 678899999999999998765
Q ss_pred ----CCCEEEEeccCCCCHHHHHHHHHHHHHHHHH
Q psy6547 230 ----SNNIIRLSPALNITEQELREGLDIIINTINT 260 (266)
Q Consensus 230 ----~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~ 260 (266)
..+.+|++++..+|++|++++++.|++++++
T Consensus 326 ~~~l~~~~vRis~~~~~t~~di~~l~~al~~~~~~ 360 (361)
T TIGR01366 326 YRKLGRNQLRVAMFPAIDPDDVEALTECVDWVVER 360 (361)
T ss_pred ccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHHhh
Confidence 3467999999999999999999999998765
No 276
>PRK08133 O-succinylhomoserine sulfhydrylase; Validated
Probab=99.59 E-value=2.3e-14 Score=125.33 Aligned_cols=224 Identities=14% Similarity=0.136 Sum_probs=137.8
Q ss_pred CCCCCCceeecCCCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCccc
Q psy6547 14 GPHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLL 93 (266)
Q Consensus 14 ~~~~~~v~~~~~~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~ 93 (266)
..++.+++.++.+|++++++++ .+++++|+++.++|++|.+. ++++|.++|+++|+++|+|++|... ....+.
T Consensus 122 ~~~G~~v~~vd~~d~~~l~~~i--~~~tklV~ie~p~NptG~v~----dl~~I~~la~~~gi~livD~t~~~~-~~~~pl 194 (390)
T PRK08133 122 ARFGIETTFVDLTDLDAWRAAV--RPNTKLFFLETPSNPLTELA----DIAALAEIAHAAGALLVVDNCFCTP-ALQQPL 194 (390)
T ss_pred HHcCcEEEEECCCCHHHHHHhc--CcCCeEEEEECCCCCCCCcC----CHHHHHHHHHHcCCEEEEECCCccc-ccCCch
Confidence 3467889999999999999999 45789999999999999886 8999999999999999999998422 111111
Q ss_pred ccccCCCCcCeeeecccccC-Cchhh-hhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHhhccHHHHHHHHHH
Q psy6547 94 AIHYEDVRPDIVILGKALSG-GLYPI-SAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGE 171 (266)
Q Consensus 94 ~~~~~~~~~d~~~~sK~~~~-g~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~ 171 (266)
..+.+..+.+++|.+++ | .++ |+++++++.++.+...........++..+..++..++.+. ...++..+++.
T Consensus 195 ---~~g~Divv~S~sK~~~g~g-~~~GG~vv~~~~~~~~~~~~~~~~g~~~~~~~a~~~l~gl~tl~--~R~~~~~~~a~ 268 (390)
T PRK08133 195 ---KLGADVVIHSATKYLDGQG-RVLGGAVVGSKELMEEVFGFLRTAGPTLSPFNAWVFLKGLETLS--LRMEAHSANAL 268 (390)
T ss_pred ---hhCCcEEEeecceeecCCc-ceEeEEEEcCHHHHHHHHHHHHHhCCCCCHHHHHHHHcccchHH--HHHHHHHHHHH
Confidence 22334444558899984 5 666 5677777766555432222333455555555554444322 12334445555
Q ss_pred HHHHHhhcccc------cCCCcc---------cEEecCccceeeEEEEeeCccchHHHHHHHHH--HCCce-------e-
Q psy6547 172 IFRSELSSPAN------KSKASF---------KLSSGGLKKSINTLILSVSAILEVYDVCIKMK--DAGLV-------T- 226 (266)
Q Consensus 172 ~l~~~l~~~~~------~~~~~~---------~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~--~~gi~-------~- 226 (266)
.+.+.|++ .+ .+.+.. ...+.|. ++.|++.. +.....+|++.|. ..+.- +
T Consensus 269 ~la~~L~~-~p~v~~v~yp~l~~~p~~~~~~~~~~g~g~---~~s~~l~~-~~~~~~~f~~~l~l~~~~~slG~~~sl~~ 343 (390)
T PRK08133 269 ALAEWLEA-HPGVERVFYPGLPSHPQHELAKRQQKGGGA---IVSFEVKG-GREAAWRVIDATRLISITANLGDTKTTIT 343 (390)
T ss_pred HHHHHHHh-CCCeeEEECCCCCCCccHHHHHHhCCCCce---EEEEEEcC-CHHHHHHHHHhCCcceEeccCCCcceeee
Confidence 66666664 21 122211 0224566 99999964 1223556666654 21111 1
Q ss_pred ccC-----------------CCCEEEEeccCCCCHHHHHHHHHHHHHHHH
Q psy6547 227 KPI-----------------SNNIIRLSPALNITEQELREGLDIIINTIN 259 (266)
Q Consensus 227 ~~~-----------------~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~ 259 (266)
.|. ..+.||+|..+. +.+.+++.|+.+++
T Consensus 344 ~p~~~~~~~~~~~~~~~~gi~~~liR~svGlE----~~~dl~~dl~~al~ 389 (390)
T PRK08133 344 HPATTTHGRLSPEARAAAGITEGLIRVAVGLE----DVADIKADLARGLA 389 (390)
T ss_pred cCCCCCcccCCHHHHHhcCCCCCeEEEEeCcC----CHHHHHHHHHHHhh
Confidence 110 246899996554 45666777776654
No 277
>PRK05968 hypothetical protein; Provisional
Probab=99.58 E-value=4.4e-14 Score=123.55 Aligned_cols=222 Identities=14% Similarity=0.007 Sum_probs=140.5
Q ss_pred CCCCCceeecCCCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCcccc
Q psy6547 15 PHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLA 94 (266)
Q Consensus 15 ~~~~~v~~~~~~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~~ 94 (266)
..+.+++.++.+|++++++.+ . ++++|+++.+.++. ++..++++|.++|+++|+++|+|++|.... ...+
T Consensus 125 ~~G~~v~~vd~~d~~~l~~~i--~-~tklV~ie~pt~~~----~~~~dl~~i~~la~~~gi~vivD~a~a~~~-~~~p-- 194 (389)
T PRK05968 125 RMGVEVDYVDGRDEEAVAKAL--P-GAKLLYLESPTSWV----FELQDVAALAALAKRHGVVTMIDNSWASPV-FQRP-- 194 (389)
T ss_pred HcCceEEEeCCCCHHHHHHhc--c-cCCEEEEECCCCCC----CcHHHHHHHHHHHHHcCCEEEEECCCcchh-ccCc--
Confidence 357788888888999999988 2 47888888655544 455699999999999999999999995321 1121
Q ss_pred cccCCCCcCeeeecccccC-CchhhhhheecHHhhhccCCCCC-CCCCCCcHHHHHHHHHHHHHHhhccHHHHHHHHHHH
Q psy6547 95 IHYEDVRPDIVILGKALSG-GLYPISAVLADDEVMGTLVPGTH-GSTYGGNPLACKLAMTALDVILEENMIENAYKMGEI 172 (266)
Q Consensus 95 ~~~~~~~~d~~~~sK~~~~-g~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~ 172 (266)
. ..|.+..+.+++|.++| |-...|++++++++.+.+..... ......++..+..+...|+.+ +...++-.++...
T Consensus 195 ~-~~g~Divv~S~tK~l~g~~~~~gG~i~~~~~~~~~l~~~~~~~~g~~~~~~~A~~~l~~L~tl--~~r~~~~~~~a~~ 271 (389)
T PRK05968 195 I-TLGVDLVIHSASKYLGGHSDTVAGVVAGSKEHIARINAEAYPYLGAKLSPFEAWLLLRGLRTL--PLRMKAHEASALE 271 (389)
T ss_pred h-hcCCcEEEeeccccccCCCCeEEEEEEECHHHHHHHHHHHHHhCCCCCChHHHHHHHcccCcH--HHHHHHHHHHHHH
Confidence 1 23444445558899984 31457888888887766553211 112345666666666666543 3334444555777
Q ss_pred HHHHhhccccc------CCCcc----cEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccC-------------
Q psy6547 173 FRSELSSPANK------SKASF----KLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPI------------- 229 (266)
Q Consensus 173 l~~~l~~~~~~------~~~~~----~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~------------- 229 (266)
+.+.|++ .+. +.... ...+.|. ++.|.+.. +.+..+|++.|...++.++.+
T Consensus 272 la~~L~~-~p~v~~v~~p~l~~~~~~~~~g~g~---~~sf~~~~--~~~~~~f~~~L~~~~~~~s~G~~~slv~p~~~~~ 345 (389)
T PRK05968 272 IARRLKA-HPVVERVCHPALANHPPAGLSGTSG---LFSFIFRE--GIDVRAFADALKLFRLGVSWGGHESLVVPAEVVL 345 (389)
T ss_pred HHHHHHh-CCCccEEECCCCCCChHHhCCCCce---EEEEEECC--HHHHHHHHHhCCccEEecCCCCCCceeeeCcccc
Confidence 7777776 332 11110 0113456 89999875 457788999997655433211
Q ss_pred --------------CCCEEEEeccCCCCHHHHHHHHHHHHHHHH
Q psy6547 230 --------------SNNIIRLSPALNITEQELREGLDIIINTIN 259 (266)
Q Consensus 230 --------------~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~ 259 (266)
..+.+|+|+++.++ +.+++.|+++++
T Consensus 346 ~~~~~~~~~~~~gi~~~liR~SvGlE~~----~dl~~dl~~al~ 385 (389)
T PRK05968 346 QQKAQPNSAARFGVSPRSVRLHVGLEGT----EALWADLEQALA 385 (389)
T ss_pred cccCCHHHHHhcCCCCCeEEEEeccCCH----HHHHHHHHHHHH
Confidence 14689999777654 444555555554
No 278
>PLN02414 glycine dehydrogenase (decarboxylating)
Probab=99.58 E-value=3.6e-13 Score=127.83 Aligned_cols=239 Identities=14% Similarity=0.104 Sum_probs=159.1
Q ss_pred cccCCCCCCceeecCC-----CHHHHHHHHhcC-CCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEecccc
Q psy6547 11 NEFGPHMPGYNIIPYN-----DVDALEAKLKSN-PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQT 84 (266)
Q Consensus 11 ~~~~~~~~~v~~~~~~-----d~~~l~~~l~~~-~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~ 84 (266)
.+....+-+|+.++.+ |+++|+++++++ +++++|+++..++.+|... ++++|.++||++|+++++|.++.
T Consensus 631 a~a~~~G~~vv~v~~d~~G~vDle~L~~~i~~~~~~ta~V~vt~pSn~gg~e~----~I~eI~~iah~~Galv~vDgAq~ 706 (993)
T PLN02414 631 ASAAMCGMKIVVVGTDAKGNINIEELRKAAEAHKDNLAALMVTYPSTHGVYEE----GIDEICDIIHDNGGQVYMDGANM 706 (993)
T ss_pred HHHHHCCCEEEEeccCCCCCcCHHHHHHHHhccCCCeEEEEEECCCccccccc----hHHHHHHHHHHcCCEEEEEecCH
Confidence 3444467889999874 799999999643 3789999998888887765 89999999999999999999993
Q ss_pred CcCCcCcccccccCCCCcCeeee--ccccc-----CCchhhhhheecHHhhhccCCCC-----------C---CCCCC--
Q psy6547 85 GLGRTGKLLAIHYEDVRPDIVIL--GKALS-----GGLYPISAVLADDEVMGTLVPGT-----------H---GSTYG-- 141 (266)
Q Consensus 85 ~~~~~g~~~~~~~~~~~~d~~~~--sK~~~-----~g~~~~g~~~~~~~~~~~~~~~~-----------~---~~~~~-- 141 (266)
- +..+ .........|++++ .|+|+ || ..+|.+.+++.+...+.... . ..+..
T Consensus 707 ~-a~~~---l~~p~~~GaD~~~~s~HK~f~~P~G~GG-Pg~G~l~~~~~L~p~lPg~~v~~~~~~~~r~~~s~iGt~~~a 781 (993)
T PLN02414 707 N-AQVG---LTSPGFIGADVCHLNLHKTFCIPHGGGG-PGMGPIGVKKHLAPFLPSHPVVPTGGIPRPEKTQPLGTISAA 781 (993)
T ss_pred H-hccC---cCCccccCCCEEEecCCccCCcCcccCC-CCeeeEEEchhhcccCCCCccccCCCcccccCCCCcCCccch
Confidence 1 1111 11112345677665 68776 34 45888888888776665321 0 01211
Q ss_pred --CcHHHHHHHHHHHHHHhhccH---HHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEe---eCccchHH
Q psy6547 142 --GNPLACKLAMTALDVILEENM---IENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILS---VSAILEVY 213 (266)
Q Consensus 142 --~~~~~~~a~~~~l~~~~~~~~---~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~~~~~~~~ 213 (266)
++.+.+..+...++.++.+++ .++...++.+++++|.+ .....+.. +.+ .. -.=+.+.+. +..+.++.
T Consensus 782 ~~g~al~l~~A~~yi~~lG~~Gl~~~a~~a~~nAnYl~~rL~~-~~~~~~~~-~~~-~~-~hEfv~~~~~l~~~~g~~~~ 857 (993)
T PLN02414 782 PWGSALILPISYTYIAMMGSEGLTDASKIAILNANYMAKRLEG-HYPVLFRG-KNG-TC-AHEFIIDLRPFKNTAGIEPE 857 (993)
T ss_pred hhhhHHHHHHHHHHHHHHCHhHHHHHHHHHHHHHHHHHHHHHh-hCCccccC-CCC-Ce-eeeEEEeccccccccCCCHH
Confidence 233444455555666666666 77788899999999987 22211111 111 10 001122222 11135678
Q ss_pred HHHHHHHHCCceecc---CCCCEEEEeccCCCCHHHHHHHHHHHHHHHHHHh
Q psy6547 214 DVCIKMKDAGLVTKP---ISNNIIRLSPALNITEQELREGLDIIINTINTMA 262 (266)
Q Consensus 214 ~~~~~l~~~gi~~~~---~~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~~ 262 (266)
++.++|.+.||..-. ...+.+|++++...+++|+|++++++..+..+..
T Consensus 858 di~krL~d~Gihapt~~~pv~~~lmiepTE~~skeelDrf~~al~~i~~e~~ 909 (993)
T PLN02414 858 DVAKRLMDYGFHAPTMSWPVPGTLMIEPTESESKAELDRFCDALISIREEIA 909 (993)
T ss_pred HHHHHHHHcCcEEeeeccccCCEEEEEeeeeCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999987532 2378999999999999999999999998877754
No 279
>PRK08776 cystathionine gamma-synthase; Provisional
Probab=99.58 E-value=8e-14 Score=122.32 Aligned_cols=187 Identities=14% Similarity=0.054 Sum_probs=123.2
Q ss_pred CCCCceeecCCCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCccccc
Q psy6547 16 HMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAI 95 (266)
Q Consensus 16 ~~~~v~~~~~~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~~~ 95 (266)
.+..++.++..|++++++.+ .+++++|+++.++|++|.+. ++++|.++|+++|+++|+||+|..-... .+ .
T Consensus 123 ~g~~v~~v~~~d~~~l~~~i--~~~tklV~l~~P~NPtG~v~----dl~~I~~la~~~gi~vIvD~a~a~~~~~-~p--l 193 (405)
T PRK08776 123 GHFALITADLTDPRSLADAL--AQSPKLVLIETPSNPLLRIT----DLRFVIEAAHKVGALTVVDNTFLSPALQ-KP--L 193 (405)
T ss_pred cCcEEEEECCCCHHHHHHhc--CcCCeEEEEECCCCCCCccC----CHHHHHHHHHHcCCEEEEECCCcccccC-Cc--c
Confidence 46678888888999999999 34689999998889999886 8999999999999999999999532111 11 1
Q ss_pred ccCCCCcCeeeecccccC--Cchhhhhhee-cHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHhhccHHHHHHHHHHH
Q psy6547 96 HYEDVRPDIVILGKALSG--GLYPISAVLA-DDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEI 172 (266)
Q Consensus 96 ~~~~~~~d~~~~sK~~~~--g~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~ 172 (266)
.++.+..+.+.+|.++| + ...|+++. ++++.+.+........+..+++.+.+....++.++ ...++..++...
T Consensus 194 -~~gaDivv~S~tK~l~g~~~-~~~G~vv~~~~~l~~~l~~~~~~~g~~~s~~~a~l~~~gl~tl~--~r~~~~~~na~~ 269 (405)
T PRK08776 194 -EFGADLVLHSTTKYINGHSD-VVGGAVVARDAELHQQLVWWANALGLTGSPFDAFLTLRGLRTLD--ARLRVHQENADA 269 (405)
T ss_pred -cccCCEEEecCceeecCCCC-ceEEEEEeCCHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhCcHH--HHHHHHHHHHHH
Confidence 13444444458899984 4 45677766 56666655433233334568888888777776543 345566667777
Q ss_pred HHHHhhcccc------cCCCcc---------cEEecCccceeeEEEEeeCccchHHHHHHHHH
Q psy6547 173 FRSELSSPAN------KSKASF---------KLSSGGLKKSINTLILSVSAILEVYDVCIKMK 220 (266)
Q Consensus 173 l~~~l~~~~~------~~~~~~---------~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~ 220 (266)
+.+.|++ .+ .+.+.. ...+.|. ++.|++.. +.....+|++.|.
T Consensus 270 la~~L~~-~p~v~~V~yP~l~~~~~~~~~~~~~~g~g~---~~s~~~~~-~~~~~~~f~~~l~ 327 (405)
T PRK08776 270 IAALLDG-HAAVNQVYYPGLASHPGHALAARQQKGFGA---MLSFELEG-GEAAVRAFVDGLR 327 (405)
T ss_pred HHHHHHc-CCCeeEEECCCCCCCcCHHHHHhcCCCCce---EEEEEEcC-CHHHHHHHHHhCC
Confidence 7777765 32 122211 0135577 99999964 1223456666654
No 280
>PRK07049 methionine gamma-lyase; Validated
Probab=99.57 E-value=4.1e-14 Score=124.99 Aligned_cols=228 Identities=11% Similarity=0.090 Sum_probs=142.3
Q ss_pred CCCCCceeec-CCCHHHHHHHHhc---CCCEEEEEEccccCCCCcccCChHHHHHHHHHHHh---cCCEEEEeccccCcC
Q psy6547 15 PHMPGYNIIP-YNDVDALEAKLKS---NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQ---YNVLFIADEVQTGLG 87 (266)
Q Consensus 15 ~~~~~v~~~~-~~d~~~l~~~l~~---~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~---~g~~li~De~~~~~~ 87 (266)
.++.+++.++ ..|++++++.+++ .+++++|+++.++|++|.+ ++.+.+.+|++.|+. +++++|+||+|.+..
T Consensus 145 ~~Gi~~v~~~~~~d~~~l~~~l~~~~~~~~tklv~lesP~NPtg~v-~d~~~l~~la~~~~~~~~~~~~vvvDety~~~~ 223 (427)
T PRK07049 145 NFGVGAVGFADGLSEAAIGAAAEAAAAKGRVSLILIETPANPTNSL-VDVAAVRRVADAIEARQGHRPIIACDNTLLGPV 223 (427)
T ss_pred hcCcEEEEEeCCCCHHHHHHHHHhhccCCCceEEEEECCCCCCCcc-cCHHHHHHHHHHhhhcccCCCEEEEECCccccc
Confidence 3455655554 4578888887743 2468999999999999988 566666666555433 799999999985431
Q ss_pred CcCcccccccCCCCcCeeeeccccc--CCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHhhccHHHH
Q psy6547 88 RTGKLLAIHYEDVRPDIVILGKALS--GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIEN 165 (266)
Q Consensus 88 ~~g~~~~~~~~~~~~d~~~~sK~~~--~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~ 165 (266)
.. .+ . ..+.+..+.++||.++ +| +++||+++++++.+.+.........+.++..+.++...|+.+. ...++
T Consensus 224 ~~-~p--l-~~g~divv~S~SK~~gG~~g-lr~G~vv~~~~l~~~l~~~~~~~g~~ls~~~a~l~~r~L~tl~--~R~~~ 296 (427)
T PRK07049 224 FQ-KP--L-EHGADLSVYSLTKYVGGHSD-LVAGAVLGRKALIRQVRALRSAIGTQLDPHSCWMLGRSLETLV--LRMER 296 (427)
T ss_pred cC-Cc--c-ccCCCEEEEcCceeecCCCC-cEEEEEECCHHHHHHHHHHHHhcCCCCCHHHHHHHHcCCChHH--HHHHH
Confidence 11 11 1 2344444556999999 58 8999999998888777654333445577888777777765432 22344
Q ss_pred HHHHHHHHHHHhhcccc------cCCC--ccc---------EEecCccceeeEEEEeeCccchHHHHHHHHH--HCCcee
Q psy6547 166 AYKMGEIFRSELSSPAN------KSKA--SFK---------LSSGGLKKSINTLILSVSAILEVYDVCIKMK--DAGLVT 226 (266)
Q Consensus 166 ~~~~~~~l~~~l~~~~~------~~~~--~~~---------~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~--~~gi~~ 226 (266)
..+++..+.+.|++ .+ .+.. +.. ..+.|. ++.|++... .....+|++.|. ..++-.
T Consensus 297 ~~~~a~~la~~L~~-~p~V~~v~yp~~l~~~~~~~~~~~~~~~g~g~---~~s~~~~~~-~~~~~~f~~~l~l~~~~~sl 371 (427)
T PRK07049 297 ANRNARAVAEFLRD-HPKVEKLHYLPFLDPDSAYGAVYKRQCTGAGS---TFSFDIKGG-QAAAFRFLNALQIFKLAVSL 371 (427)
T ss_pred HHHHHHHHHHHHHh-CCCccEEECCCCCCCCCccHHHHHhhCCCCcc---EEEEEEcCC-HHHHHHHHHcCcccEEcccC
Confidence 46677777777776 32 1211 110 124567 899998641 233556766664 211111
Q ss_pred --------ccC-----------------CCCEEEEeccCCCCHHHHHHHHHHHHHHHH
Q psy6547 227 --------KPI-----------------SNNIIRLSPALNITEQELREGLDIIINTIN 259 (266)
Q Consensus 227 --------~~~-----------------~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~ 259 (266)
.|. ..+.||+|+.+. +.+.+++.|+++++
T Consensus 372 G~~~sli~~~~~~~h~~~~~~~~~~~gi~~~liR~svGlE----~~~dl~~dl~~al~ 425 (427)
T PRK07049 372 GGTESLASHPASMTHSGVPADVRERIGVLESTIRLSIGIE----HPDDLIADLAQALD 425 (427)
T ss_pred CCCCceeeCCCccccccCCHHHHHhcCCCcCeEEEEeCcC----CHHHHHHHHHHHHh
Confidence 010 136899996554 55666777777765
No 281
>TIGR01328 met_gam_lyase methionine gamma-lyase. This model describes a methionine gamma-lyase subset of a family of PLP-dependent trans-sulfuration enzymes. The member from the parasite Trichomonas vaginalis is described as catalyzing alpha gamma- and alpha-beta eliminations and gamma-replacement reactions on methionine, cysteine, and some derivatives. Likewise, the enzyme from Pseudomonas degrades cysteine as well as methionine.
Probab=99.56 E-value=7.7e-14 Score=122.04 Aligned_cols=225 Identities=13% Similarity=0.094 Sum_probs=142.6
Q ss_pred CCCCCCceeecCCCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCccc
Q psy6547 14 GPHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLL 93 (266)
Q Consensus 14 ~~~~~~v~~~~~~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~ 93 (266)
..++.++++++.+|++++++.+ .+++++|+++.++|++|.+. ++++|.++|+++|+++|+|++|... ..+..
T Consensus 120 ~~~G~~~~~vd~~d~e~l~~~i--~~~tklV~le~p~Np~G~v~----dl~~I~~la~~~gi~livD~a~a~~-~~~~~- 191 (391)
T TIGR01328 120 TKFGIQVDFINMAIPEEVKAHI--KDNTKIVYFETPANPTMKLI----DMERVCRDAHSQGVKVIVDNTFATP-MLTNP- 191 (391)
T ss_pred hcCCeEEEEECCCCHHHHHHhh--ccCCeEEEEECCCCCCCccc----CHHHHHHHHHHcCCEEEEECCCchh-ccCCc-
Confidence 4467788889988999999999 45789999999999999886 7999999999999999999999521 11221
Q ss_pred ccccCCCCcCeeeecccccC-Cchh-hhhheecHHhhhccCCC--CCCCCCCCcHHHHHHHHHHHHHHhhccHHHHHHHH
Q psy6547 94 AIHYEDVRPDIVILGKALSG-GLYP-ISAVLADDEVMGTLVPG--THGSTYGGNPLACKLAMTALDVILEENMIENAYKM 169 (266)
Q Consensus 94 ~~~~~~~~~d~~~~sK~~~~-g~~~-~g~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~ 169 (266)
. ..+.+..+.+++|.+++ | .+ .|++++++++.+.++.. ........++..++.+...|+.+ ....++..++
T Consensus 192 -~-~~g~Divv~S~sK~lgg~g-~~~gG~v~~~~~li~~l~~~~~~~~~g~~l~~~~a~l~l~~L~tl--~~r~~~~~~n 266 (391)
T TIGR01328 192 -V-ALGVDVVVHSATKYIGGHG-DVVAGLICGKAELLQQIRMVGIKDMTGSVISPFDAWLILRGLKTL--NIRMKRHSEN 266 (391)
T ss_pred -h-hcCCCEEEccccccccCCC-CceEEEEEcCHHHHHHHHHHHHHhCCCCCCCcHHHHHHHhCcCcH--HHHHHHHHHH
Confidence 1 12333334448899984 4 44 56778888877766532 11112344666665555545432 2245566667
Q ss_pred HHHHHHHhhccccc------CCCccc---------EEecCccceeeEEEEeeCccchHHHHHHHHH--HCCce-------
Q psy6547 170 GEIFRSELSSPANK------SKASFK---------LSSGGLKKSINTLILSVSAILEVYDVCIKMK--DAGLV------- 225 (266)
Q Consensus 170 ~~~l~~~l~~~~~~------~~~~~~---------~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~--~~gi~------- 225 (266)
...+.+.|+. .+. +.+... ..+.|. ++.|++... .....+|++.|. ..+.-
T Consensus 267 a~~la~~L~~-~p~v~~v~yp~l~~~~~~~~~~~~~~~~g~---~~s~~~~~~-~~~~~~f~~~l~~~~~~~s~G~~~sl 341 (391)
T TIGR01328 267 AMKVAEYLKS-HPAVEKVYYPGFEDHPGHDIAAKQMRMGGG---MITFELKGG-FAGAKKLLNNLKLIRLAVSLGDAETL 341 (391)
T ss_pred HHHHHHHHHh-CCCccEEECCCCCCCccHHHHHHhCCCCCc---eEEEEeCCC-HHHHHHHHHhCCcceEecCCCCCccc
Confidence 7777777775 321 222111 224466 899998641 233556666654 11111
Q ss_pred -eccC-----------------CCCEEEEeccCCCCHHHHHHHHHHHHHHHHH
Q psy6547 226 -TKPI-----------------SNNIIRLSPALNITEQELREGLDIIINTINT 260 (266)
Q Consensus 226 -~~~~-----------------~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~ 260 (266)
..|. ..+.+|+|..+. |.+.+++.|+++++.
T Consensus 342 ~~~~~~~~~~~~~~~~~~~~gi~~~liR~svGlE----~~~dl~~dl~~al~~ 390 (391)
T TIGR01328 342 IQHPASMTHAVVPKEEREAAGITDGMIRLSVGLE----DADDLIADLKQALDA 390 (391)
T ss_pred CcCCCccccccCCHHHHHhcCCCCCeEEEEeCcC----CHHHHHHHHHHHHhh
Confidence 0010 136899995544 567778888877764
No 282
>TIGR03235 DNA_S_dndA cysteine desulfurase DndA. This model describes DndA, a protein related to IscS and part of a larger family of cysteine desulfurases. It is encoded, typically, divergently from a conserved, sparsely distributed operon for sulfur modification of DNA. This modification system is designated dnd, after the phenotype of DNA degradation during electrophoresis. The system is sporadically distributed in bacteria, much like some restriction enzyme operons. DndB is described as a putative ATPase.
Probab=99.56 E-value=4.9e-14 Score=121.97 Aligned_cols=193 Identities=12% Similarity=0.097 Sum_probs=128.8
Q ss_pred CCCCceeecC-----CCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcC
Q psy6547 16 HMPGYNIIPY-----NDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTG 90 (266)
Q Consensus 16 ~~~~v~~~~~-----~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g 90 (266)
.+.+++.++. .|+++|++.+ .+++++++++.+++++|.+. ++++|.++|+++|+++++|++|+ ++.
T Consensus 111 ~G~~v~~v~~~~~~~~d~~~l~~~l--~~~~~lv~~~~~~n~tG~~~----~~~~I~~l~~~~~~~~ivD~a~~-~g~-- 181 (353)
T TIGR03235 111 NGFTVTYLPVDESGRIDVDELADAI--RPDTLLVSIMHVNNETGSIQ----PIREIAEVLEAHEAFFHVDAAQV-VGK-- 181 (353)
T ss_pred cCCEEEEEccCCCCcCCHHHHHHhC--CCCCEEEEEEcccCCceecc----CHHHHHHHHHHcCCEEEEEchhh-cCC--
Confidence 4567777764 3789999998 34679999999999999986 78999999999999999999994 322
Q ss_pred cccccccCCCCcCeeeec--ccccCCchhhhhheecHHhhhc--cCCCC-------CCCCCCCcHHHHHHHHHHHHHHhh
Q psy6547 91 KLLAIHYEDVRPDIVILG--KALSGGLYPISAVLADDEVMGT--LVPGT-------HGSTYGGNPLACKLAMTALDVILE 159 (266)
Q Consensus 91 ~~~~~~~~~~~~d~~~~s--K~~~~g~~~~g~~~~~~~~~~~--~~~~~-------~~~~~~~~~~~~~a~~~~l~~~~~ 159 (266)
..+..+.+ .+|++++| |++++ ..+|+++.+++.... +.+.. .....+.+.....+..++++.+..
T Consensus 182 ~~~~~~~~--~~D~~~~s~~K~~gp--~g~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~~~~ 257 (353)
T TIGR03235 182 ITVDLSAD--RIDLISCSGHKIYGP--KGIGALVIRKRGKPKAPLKPIMFGGGQERGLRPGTLPVHLIVGMGEAAEIARR 257 (353)
T ss_pred cccccccc--CCCEEEeehhhcCCC--CceEEEEEccCcccccccCceeeCCCCcCccccCCCChHHHHHHHHHHHHHHh
Confidence 12233333 45666655 98652 347888888764322 22110 112334566667777778877653
Q ss_pred --ccHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccC
Q psy6547 160 --ENMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPI 229 (266)
Q Consensus 160 --~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~ 229 (266)
++..++++++.+++++.|++ .+...+......... ++.|.++ +.+.+++.+.|.+ +|.++++
T Consensus 258 ~~~~~~~~~~~l~~~l~~~l~~-~g~~~~~~~~~~~~~---i~~~~~~---~~~~~~v~~~L~~-~i~v~~g 321 (353)
T TIGR03235 258 NAQAWEVKLRAMRNQLRDALQT-LGVKLNGDPAETIPH---ILNFSID---GVNSEALIVNLRA-DAAVSTG 321 (353)
T ss_pred hHHHHHHHHHHHHHHHHHHhcc-CCeEEeCCcccccCC---EEEEEeC---CcCHHHHHHHHhC-CeEEEch
Confidence 45778889999999999887 553322210111223 5666554 3567888888865 8888865
No 283
>KOG2862|consensus
Probab=99.55 E-value=1.4e-12 Score=106.01 Aligned_cols=220 Identities=15% Similarity=0.124 Sum_probs=162.7
Q ss_pred CHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCcccccccCCCCcCeee
Q psy6547 27 DVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVI 106 (266)
Q Consensus 27 d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~~~~~~~~~~d~~~ 106 (266)
.++++++.+.++ +++++++....+.+|... +.++...++|++|++++++|-+-+ + .|..|.++.||++.-+.-
T Consensus 130 ~le~i~~~lsqh-~p~~vfv~hgdsSTgV~q---~~~~~~g~lc~k~~~lllVD~VaS-l--ggt~F~mDewgVDvaytg 202 (385)
T KOG2862|consen 130 PLEEITEKLSQH-KPKAVFVTHGDSSTGVLQ---DLLAISGELCHKHEALLLVDTVAS-L--GGTEFEMDEWGVDVAYTG 202 (385)
T ss_pred cHHHHHHHHHhc-CCceEEEEecCccccccc---hHHHHHHHHhhcCCeEEEEechhh-c--CCccceehhhcccEEEec
Confidence 589999999877 689999999998899875 348888999999999999998885 3 357889999998887777
Q ss_pred ecccccCCchhhhhheecHHhhhccCCCCC-----------------------CCCCCCcHHHHHHHHHHHHHHhhc---
Q psy6547 107 LGKALSGGLYPISAVLADDEVMGTLVPGTH-----------------------GSTYGGNPLACKLAMTALDVILEE--- 160 (266)
Q Consensus 107 ~sK~~~~g~~~~g~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~a~~~~l~~~~~~--- 160 (266)
.-|++++. -.++.+..+++..+.++..+. ...++++.-..=+..++|..+-++
T Consensus 203 SQKaL~aP-~GLsiisfS~ka~~~~~~rK~~~~~~yFd~~~~~~~wgc~~e~~~yhhT~pv~lly~Lr~AL~~I~eeGL~ 281 (385)
T KOG2862|consen 203 SQKALGAP-AGLSIISFSDKALEAIRDRKTKPVSFYFDILRLGNFWGCDGEPRAYHHTPPVQLLYSLRAALALIAEEGLE 281 (385)
T ss_pred chhhcCCC-CCcceeecCHHHHHHHhhccCCceEEEEeHHhhcchhccCCcccccccCCcHHHHHHHHHHHHHHHHHHHH
Confidence 88999954 446778888888777764311 111233434445566777766554
Q ss_pred cHHHHHHHHHHHHHHHhhcccccCC-CcccEEecCccceeeEEEEeeCccchHHHHHHHHHHC-Cceec----cCCCCEE
Q psy6547 161 NMIENAYKMGEIFRSELSSPANKSK-ASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDA-GLVTK----PISNNII 234 (266)
Q Consensus 161 ~~~~~~~~~~~~l~~~l~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~-gi~~~----~~~~~~i 234 (266)
+.+++-++..++++..|++ ++... ...+...... ...+..+. +.|..+++.++..+ ++.+. +..+..+
T Consensus 282 ~~~~rH~e~s~~l~~~l~~-~GLq~fv~~e~~rlpt---vttv~vp~--gvDw~dVv~~~~~~~~vei~gglg~~~gKv~ 355 (385)
T KOG2862|consen 282 NSWRRHREMSKWLKLSLEA-LGLQLFVVDEELRLPT---VTTVKVPY--GVDWKDVVAYAMSHYVVEIGGGLGPTVGKVF 355 (385)
T ss_pred HHHHHHHHHHHHHHHHHHH-hCccceecChhhccCc---ceeeecCC--CCCHHHHHHHHHHhcCEEeccccCCCcccEE
Confidence 5677778899999999998 66422 2222344455 67777777 78999999999988 44443 3356889
Q ss_pred EEecc-CCCCHHHHHHHHHHHHHHHHH
Q psy6547 235 RLSPA-LNITEQELREGLDIIINTINT 260 (266)
Q Consensus 235 R~~~~-~~~t~~~i~~~~~~l~~~~~~ 260 (266)
||.+. .+-+.+.++..++.|..++++
T Consensus 356 RIGl~gcna~~e~i~~v~~ll~~alq~ 382 (385)
T KOG2862|consen 356 RIGLLGCNANVEYIDNVVELLKLALQR 382 (385)
T ss_pred EEEEeeccCCcHHHHHHHHHHHHHHhh
Confidence 99764 455788899999999888865
No 284
>PRK03080 phosphoserine aminotransferase; Provisional
Probab=99.55 E-value=2.9e-13 Score=118.17 Aligned_cols=204 Identities=11% Similarity=-0.013 Sum_probs=139.2
Q ss_pred EEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCcccccccCCCCcCeee--ecccccCCchhh
Q psy6547 41 ICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVI--LGKALSGGLYPI 118 (266)
Q Consensus 41 ~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~~~~~~~~~~d~~~--~sK~~~~g~~~~ 118 (266)
+++|.+.++.+.+|.+. ++++|.+ +++|+++++|-+++ +| +..+.++ .+ |++. ..|+|++. ..+
T Consensus 137 ~~~V~~~h~~t~tG~~~----pi~~I~~--~~~g~~~vVDa~qs-~G--~~pidv~--~i--D~~~~s~~K~l~~P-~G~ 202 (378)
T PRK03080 137 DRDVVFTWNGTTTGVRV----PVARWIG--ADREGLTICDATSA-AF--ALPLDWS--KL--DVYTFSWQKVLGGE-GGH 202 (378)
T ss_pred CCCEEEEecCCccceec----cchhhcc--ccCCCeEEEecccc-cc--cCCCCHH--HC--cEEEEehhhhCCCC-Cce
Confidence 45688888999999987 7889988 88999999999994 32 1233333 33 5555 55999865 568
Q ss_pred hhheecHHhhhccCCCC----------------------CCCC-CCCcHHHHHHHHHHHHHHhhc----cHHHHHHHHHH
Q psy6547 119 SAVLADDEVMGTLVPGT----------------------HGST-YGGNPLACKLAMTALDVILEE----NMIENAYKMGE 171 (266)
Q Consensus 119 g~~~~~~~~~~~~~~~~----------------------~~~~-~~~~~~~~~a~~~~l~~~~~~----~~~~~~~~~~~ 171 (266)
|++..+++..+.+.+.. ...+ ++++..+..+..++|+.+.+. ++.++.+++.+
T Consensus 203 g~l~v~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~tp~i~~i~~l~~al~~l~~~gG~e~i~~r~~~l~~ 282 (378)
T PRK03080 203 GMAILSPRAVERLESYTPARPIPKFFRLTKGGKAIENSFKGQTINTPSMLTVEDYLDQLDWANSIGGLDALIARTAANAS 282 (378)
T ss_pred EEEEECHHHHHhhhcccCCCCCchhheeccchHHhhhhhcCCcccCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999998876655321 0111 234444555567788887664 35677888888
Q ss_pred HHHHHhhccccc-CCCcccE-EecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccCC----CCEEEEeccCCCCHH
Q psy6547 172 IFRSELSSPANK-SKASFKL-SSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPIS----NNIIRLSPALNITEQ 245 (266)
Q Consensus 172 ~l~~~l~~~~~~-~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~----~~~iR~~~~~~~t~~ 245 (266)
++++.+++ ++. ..+.... ...+. ++.|.+++.+.....++..+|.++|+.++.++ .+.+|+|++..++++
T Consensus 283 ~l~~~l~~-~~~~~~~~~~~~~~s~~---i~~~~~~~~~~~~~~~~~~~l~~~~i~v~~g~~~~~~~~vRis~~~~~t~~ 358 (378)
T PRK03080 283 VLYDWAEK-TPWATPLVADPATRSNT---SVTLDFVDAQAAVDAAAVAKLLRENGAVDIEPYRDAPNGLRIWCGPTVEPA 358 (378)
T ss_pred HHHHHHHh-CCCcccccCCccccCcc---EEEEEcCCchHHHHHHHHHHHHHcCCeeccccccCCCCcEEEecCCCCCHH
Confidence 99998887 553 2221101 12234 67777654111123457777888898887532 478999999999999
Q ss_pred HHHHHHHHHHHHHHHHh
Q psy6547 246 ELREGLDIIINTINTMA 262 (266)
Q Consensus 246 ~i~~~~~~l~~~~~~~~ 262 (266)
|++++++.|++++++..
T Consensus 359 di~~l~~al~~~~~~~~ 375 (378)
T PRK03080 359 DVEALTPWLDWAFERLK 375 (378)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 99999999999887643
No 285
>TIGR01324 cysta_beta_ly_B cystathionine beta-lyase, bacterial. This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.
Probab=99.55 E-value=1e-13 Score=120.59 Aligned_cols=223 Identities=12% Similarity=0.002 Sum_probs=134.4
Q ss_pred CCCCceeecCCCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCccccc
Q psy6547 16 HMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAI 95 (266)
Q Consensus 16 ~~~~v~~~~~~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~~~ 95 (266)
++.++..++..+.+++++++ .+++++|++|.+.|++|.+. ++++|+++|+++|+++|+|++|+ .+..+.+
T Consensus 113 ~gi~v~~~d~~~~e~l~~~i--~~~tklV~lesp~Np~g~~~----dl~~I~~la~~~g~~livD~t~a-~g~~~~p--- 182 (377)
T TIGR01324 113 MGVDITYYDPLIGEDIATLI--QPNTKVLFLEAPSSITFEIQ----DIPAIAKAARNPGIVIMIDNTWA-AGLLFKP--- 182 (377)
T ss_pred cCcEEEEECCCCHHHHHHhc--CCCceEEEEECCCCCCCcHH----HHHHHHHHHHHcCCEEEEECCCc-cccccCc---
Confidence 45667777666668888888 55799999999999887775 99999999999999999999994 2222221
Q ss_pred ccCCCCcCeeeecccccC--CchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHH
Q psy6547 96 HYEDVRPDIVILGKALSG--GLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIF 173 (266)
Q Consensus 96 ~~~~~~~d~~~~sK~~~~--g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l 173 (266)
..+|.+..+.+++|+++| + .-.|+++++++..+.+...........+|..+......++.+.- ..++..+++..+
T Consensus 183 l~~gaDivv~S~tK~l~G~~d-~~gG~v~~~~~~~~~l~~~~~~~G~~l~p~~a~~~~rgl~tl~~--R~~~~~~~a~~l 259 (377)
T TIGR01324 183 LEHGVDISIQAGTKYLVGHSD-IMIGTVVANARTWDQLREHSYLMGQMVDADDAYTTLRGLRTLGV--RLKQHQESSLAI 259 (377)
T ss_pred cccCceEEEecCceeccCCCC-ceEEEEEeCHHHHHHHHHHHHHhCCCCCHHHHHHHHhhhhhHHH--HHHHHHHHHHHH
Confidence 123444444447899984 3 34677888877766554222222233455555445444443221 233333444445
Q ss_pred HHHhhcccc------cCCCccc---------EEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccC---------
Q psy6547 174 RSELSSPAN------KSKASFK---------LSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPI--------- 229 (266)
Q Consensus 174 ~~~l~~~~~------~~~~~~~---------~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~--------- 229 (266)
.+.|++ -+ .+.+... ..+.|. ++.|.+...+.....+|++.|.-.++.+..+
T Consensus 260 a~~L~~-~p~v~~v~yp~l~~~p~~~~~~~~~~~~g~---~~s~~l~~~~~~~~~~~~~~l~~~~~~~slG~~~sl~~~~ 335 (377)
T TIGR01324 260 AKWLSE-QPEVARVLHPALPSCPGHEFWKRDFSGSSG---LFSFVLQRLTQKQVHAFLDHLQLFGLGYSWGGYESLALCN 335 (377)
T ss_pred HHHHHh-CCCcCEEECCCCCCCccHHHHHHhccCCCc---eEEEEECCCCHHHHHHHHHhCCcceEeccCCCccceeecC
Confidence 555554 11 1222110 124567 8999996411334667888776543332111
Q ss_pred --------------CCCEEEEeccCCCCHHHHHHHHHHHHHHHH
Q psy6547 230 --------------SNNIIRLSPALNITEQELREGLDIIINTIN 259 (266)
Q Consensus 230 --------------~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~ 259 (266)
.++.+|+|..+. |.+.+++.|.++++
T Consensus 336 ~~~~~~~~~~~~~~~~~liR~svGlE----~~~dl~~dl~~al~ 375 (377)
T TIGR01324 336 QPELGHRPNIKRNLEGPLIRVHIGLE----NVDDLKADLKAGFE 375 (377)
T ss_pred CCCCCHHHHHhccCCCCEEEEEeCCC----CHHHHHHHHHHHHh
Confidence 225789996655 45566667766665
No 286
>PRK07503 methionine gamma-lyase; Provisional
Probab=99.55 E-value=3.3e-13 Score=118.56 Aligned_cols=154 Identities=13% Similarity=0.067 Sum_probs=107.2
Q ss_pred CCCCCCceeecCCCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCccc
Q psy6547 14 GPHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLL 93 (266)
Q Consensus 14 ~~~~~~v~~~~~~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~ 93 (266)
..++.+++.++..|++++++.+ .+++++|+++.++|++|.+. ++++|.++|+++|+++|+|++|... ..+...
T Consensus 126 ~~~G~~v~~vd~~d~~~l~~~i--~~~tklV~le~p~NPtG~~~----di~~I~~la~~~gi~lIvD~a~a~~-~~~~~l 198 (403)
T PRK07503 126 GEFGVTVRHVDLTDPAALKAAI--SDKTRMVYFETPANPNMRLV----DIAAVAEIAHGAGAKVVVDNTYCTP-YLQRPL 198 (403)
T ss_pred hhCCEEEEEeCCCCHHHHHHhc--CccCcEEEEeCCCCCCCeee----CHHHHHHHHHHcCCEEEEECCCccc-ccCCch
Confidence 4578888899888999999999 44789999998899999887 8999999999999999999999532 122221
Q ss_pred ccccCCCCcCeeeecccccC-CchhhhhheecHHhhhccCCC--CCCCCCCCcHHHHHHHHHHHHHHhhccHHHHHHHHH
Q psy6547 94 AIHYEDVRPDIVILGKALSG-GLYPISAVLADDEVMGTLVPG--THGSTYGGNPLACKLAMTALDVILEENMIENAYKMG 170 (266)
Q Consensus 94 ~~~~~~~~~d~~~~sK~~~~-g~~~~g~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~ 170 (266)
..+.+..+.+++|.+++ |-.+.|+++.++++.+.++.. ........+++.++.+...|+.+.. ..++..++.
T Consensus 199 ---~~g~Di~v~S~tK~l~g~gd~~gG~v~~~~~l~~~l~~~~~~~~~g~~~s~~~a~l~l~~L~tl~~--r~~~~~~na 273 (403)
T PRK07503 199 ---ELGADLVVHSATKYLGGHGDITAGLVVGGKALADRIRLEGLKDMTGAVMSPFDAFLLMRGLKTLAL--RMDRHCASA 273 (403)
T ss_pred ---hhCCCEEEccccccccCCCceeEEEEEcCHHHHHHHHhhhHHhCcCCCCCHHHHHHHHcCcchHHH--HHHHHHHHH
Confidence 12334444458899995 315678888888887776522 2233456677777776666654422 233334556
Q ss_pred HHHHHHhhc
Q psy6547 171 EIFRSELSS 179 (266)
Q Consensus 171 ~~l~~~l~~ 179 (266)
..+.+.|++
T Consensus 274 ~~~a~~L~~ 282 (403)
T PRK07503 274 QAVAEWLAR 282 (403)
T ss_pred HHHHHHHHh
Confidence 666666664
No 287
>TIGR02379 ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase. This family consists of TDP-4-keto-6-deoxy-D-glucose transaminases, the WecE (formerly RffA) protein of enterobacterial common antigen (ECA) biosynthesis, from enterobacteria. It also includes closely matching sequence from species not expected to make ECA, but which contain other genes for the biosynthesis of TDP-4-keto-6-deoxy-D-Glc, an intermediate in the biosynthesis of other compounds as well and the substrate of WecA. This family belongs to the DegT/DnrJ/EryC1/StrS aminotransferase family (pfam01041).
Probab=99.55 E-value=5.9e-13 Score=115.90 Aligned_cols=223 Identities=11% Similarity=0.094 Sum_probs=143.0
Q ss_pred CCCCCCceeecCC------CHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcC
Q psy6547 14 GPHMPGYNIIPYN------DVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLG 87 (266)
Q Consensus 14 ~~~~~~v~~~~~~------d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~ 87 (266)
.-.+.+++.++.+ |++++++.+ .+++++|+.+ + ++|... ++++|.++|++||++||+|++|+...
T Consensus 89 ~~~G~~~v~vd~d~~~~~~d~~~le~~i--~~~tk~Iip~--~-~~G~~~----d~~~I~~la~~~~i~vIeDaa~~~g~ 159 (376)
T TIGR02379 89 VLRGAKIVFVDIRPDTMNIDETLIESAI--THRTKAIVPV--H-YAGVAC----DMDTIMALANKHQLFVIEDAAQGVMS 159 (376)
T ss_pred HHcCCEEEEEecCCCcCCCCHHHHHHhc--CcCceEEEEe--C-CCCCcc----CHHHHHHHHHHCCCEEEEECccccCC
Confidence 3456677777643 688899988 4467888643 2 356555 78999999999999999999995321
Q ss_pred CcCcccccccCCCCcCeeeec----ccccCCchhhhhheec-HHhhhccCCCC---------------------CCCCCC
Q psy6547 88 RTGKLLAIHYEDVRPDIVILG----KALSGGLYPISAVLAD-DEVMGTLVPGT---------------------HGSTYG 141 (266)
Q Consensus 88 ~~g~~~~~~~~~~~~d~~~~s----K~~~~g~~~~g~~~~~-~~~~~~~~~~~---------------------~~~~~~ 141 (266)
.. .-...+...|+.+|| |.+++| .+.|+++.+ +++.+.++... .+..+-
T Consensus 160 ~~----~~~~~g~~~~~~~fSf~~~K~l~~g-~~gG~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~n~~ 234 (376)
T TIGR02379 160 TY----KGRALGSIGHLGTFSFHETKNYTSG-GEGGALLINDQAFIERAEIIREKGTNRSQFFRGEVDKYTWRDIGSSYL 234 (376)
T ss_pred cc----CCcccCCCCCEEEEeCCCCCcCccc-CCceEEEECCHHHHHHHHHHHHhCCCCccccccCCCcceeeeecccCC
Confidence 11 111224445788888 999977 678987765 56666554211 123334
Q ss_pred CcHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhcccccCC---C---cccEEecCccceeeEEEEeeCccchHHHH
Q psy6547 142 GNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSSPANKSK---A---SFKLSSGGLKKSINTLILSVSAILEVYDV 215 (266)
Q Consensus 142 ~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~---~---~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 215 (266)
.+.+.++.+...|+.++ +..++.+++.+++.+.|.. +.... + +........ ++++.++. ..+.+++
T Consensus 235 ~~~~~Aa~g~~qL~~l~--~~~~~r~~~~~~y~~~L~~-~~~~~~~~~~~~~~~~~~~~~---~~~i~~~~--~~~r~~l 306 (376)
T TIGR02379 235 PSELQAAYLWAQLEQAD--RINQDRLATWQLYQDALKP-LEEKGIIELPSIPNGCQHNAH---MFYIKLKD--EDDRNEL 306 (376)
T ss_pred ccHHHHHHHHHHHHHhH--HHHHHHHHHHHHHHHHhcc-CCcCCeeeCCCCCCCCeeeeE---EEEEEECC--cCCHHHH
Confidence 45556666666665543 3556666677778888776 33111 1 110111112 44555544 3467899
Q ss_pred HHHHHHCCceeccCC--------------------------CCEEEEeccCCCCHHHHHHHHHHHHHHH
Q psy6547 216 CIKMKDAGLVTKPIS--------------------------NNIIRLSPALNITEQELREGLDIIINTI 258 (266)
Q Consensus 216 ~~~l~~~gi~~~~~~--------------------------~~~iR~~~~~~~t~~~i~~~~~~l~~~~ 258 (266)
.+.|.++||.+++.. ...+.+-++...++++++..++.|++++
T Consensus 307 ~~~L~~~gI~~~~~~~p~~~~~~~~~~~~~~~~~p~~~~~~~~~l~LP~~~~l~~~~~~~i~~~i~~~~ 375 (376)
T TIGR02379 307 IKYLKEQEIMAVFHYVPLHSSPAGRYFGRFHGEDIYTTKESERLVRLPLYYGLSKEDQARVIQTICDYL 375 (376)
T ss_pred HHHHHHCCCCccccCcCCCcchhHHhhCCCCCCChHHHHHHhceEEccCCCCCCHHHHHHHHHHHHHHh
Confidence 999999999876210 1346666677899999999999998864
No 288
>TIGR01329 cysta_beta_ly_E cystathionine beta-lyase, eukaryotic. This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.
Probab=99.55 E-value=4.2e-14 Score=123.20 Aligned_cols=224 Identities=13% Similarity=0.102 Sum_probs=138.6
Q ss_pred CCCCCceeecCCCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCcccc
Q psy6547 15 PHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLA 94 (266)
Q Consensus 15 ~~~~~v~~~~~~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~~ 94 (266)
.++.++++++..|++++++++ ++++++|+++.+.|++|.+. ++++|.++|+++|+++|+|++|... .....
T Consensus 108 ~~G~~v~~vd~~d~~~le~~i--~~~tklv~le~psnptg~v~----dl~~I~~la~~~g~~vivD~a~~~~-~~~~~-- 178 (378)
T TIGR01329 108 RSGVVVVHVDTTDLDKVKAAL--GPKTKLVLLESPTNPLQKIV----DIRKISEMAHAQNALVVVDNTMMSP-LLCNP-- 178 (378)
T ss_pred HcCcEEEEeCCCCHHHHHHhc--CcCceEEEEECCCCCCCeee----cHHHHHHHHHHcCCEEEEECCCccc-ccCCh--
Confidence 368889999988999999999 45789999999999999887 8999999999999999999998321 11111
Q ss_pred cccCCCCcCeeeecccccCC-chhhhhheec-HHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHhhccHHHHHHHHHHH
Q psy6547 95 IHYEDVRPDIVILGKALSGG-LYPISAVLAD-DEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEI 172 (266)
Q Consensus 95 ~~~~~~~~d~~~~sK~~~~g-~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~ 172 (266)
. .++.+..+.+.+|+++|+ -...|+++++ +.+.+.+...........++..+..+...++.+ ....++-.++...
T Consensus 179 l-~~g~Di~v~S~tK~l~G~~~~~~G~v~~~~~~~~~~~~~~~~~~G~~~~~~~a~l~~~~l~tl--~~R~e~~~~na~~ 255 (378)
T TIGR01329 179 L-ELGADIVYHSATKFLAGHSDVMAGVLAVKGEEIAKKVYFLQNSTGSGLAPFDCWLLLRGIKTL--AIRIEKQQENARA 255 (378)
T ss_pred h-hcCCcEEEEecceeccCCccceeEEEEeCcHHHHHHHHHHHHhcCCcCCHHHHHHHHccCCCH--HHHHHHHHHHHHH
Confidence 1 234444455588999853 0347888774 444455543322223334555444333333222 1123333344444
Q ss_pred HHHHhhcccc------cCCCcc---------cEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccC--------
Q psy6547 173 FRSELSSPAN------KSKASF---------KLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPI-------- 229 (266)
Q Consensus 173 l~~~l~~~~~------~~~~~~---------~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~-------- 229 (266)
+.+.|++ -. .+.+.. ...+.|. ++.|.+.. ...+.+|+..|...++.++.+
T Consensus 256 la~~L~~-~~~v~~v~~p~l~~~p~~~l~~~~~~g~~~---~~sf~~~~--~~~~~~~~~~L~~~~i~~s~G~~~sl~~~ 329 (378)
T TIGR01329 256 IAMFLST-HPRVKKVRYAGLPSHPGFHLHFSQAKGAGS---VLSFETGS--VALSKRLVEATKLFSITVSFGSVNSLISM 329 (378)
T ss_pred HHHHHHh-CCCccEEECCCCCCCccHHHHHHhCCCcce---EEEEEECC--HHHHHHHHHhCcCcccccCCCCCCceeeC
Confidence 4444443 11 111111 0123345 89999943 233778999996666555432
Q ss_pred -------------------CCCEEEEeccCCCCHHHHHHHHHHHHHHHHH
Q psy6547 230 -------------------SNNIIRLSPALNITEQELREGLDIIINTINT 260 (266)
Q Consensus 230 -------------------~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~ 260 (266)
..+.+|+|..+. +.+.+++.|++++++
T Consensus 330 p~~~~~~~~~~~~~~~~gi~~~liR~svGlE----~~~dl~~dl~~al~~ 375 (378)
T TIGR01329 330 PCFMSHASIPAEVREERGLPEDLVRLSVGIE----DVDDLISDLDIAFVT 375 (378)
T ss_pred CCccccccCCHHHHHhcCCCCCeEEEEeccC----CHHHHHHHHHHHHHh
Confidence 136899995544 566677777777764
No 289
>COG2008 GLY1 Threonine aldolase [Amino acid transport and metabolism]
Probab=99.54 E-value=8.7e-14 Score=115.72 Aligned_cols=218 Identities=16% Similarity=0.173 Sum_probs=144.2
Q ss_pred CHHHHHHHHhc----CCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccC--cCCcCcccccccCCC
Q psy6547 27 DVDALEAKLKS----NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTG--LGRTGKLLAIHYEDV 100 (266)
Q Consensus 27 d~~~l~~~l~~----~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~--~~~~g~~~~~~~~~~ 100 (266)
++++++..++. +..+.+++++..++.+|.+ +|.+.+++|.++|+++|++|.+|.+--. .-..| .+...+..
T Consensus 113 t~e~v~~~i~~~d~~~~~~~~~~~e~~~te~GtV-y~l~el~~i~~~~k~~~l~LHmDGAR~~nA~valg--~~~~~~~~ 189 (342)
T COG2008 113 TPEDVEAAIRPDDIHHAPTPLAVLENTATEGGTV-YPLDELEAISAVCKEHGLPLHMDGARLANALVALG--VALKTIKS 189 (342)
T ss_pred CHHHHHHhhcCCCcccCCCceEEEeeccCCCcee-cCHHHHHHHHHHHHHhCCceeechHHHHHHHHHcC--CCHHHHHh
Confidence 79999998864 2366777777777777877 9999999999999999999999987722 11122 23333444
Q ss_pred CcCeee--ecccccCCchhhhh-heecHHhhhccCC--CCCCCCCCCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHH
Q psy6547 101 RPDIVI--LGKALSGGLYPISA-VLADDEVMGTLVP--GTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRS 175 (266)
Q Consensus 101 ~~d~~~--~sK~~~~g~~~~g~-~~~~~~~~~~~~~--~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~ 175 (266)
..|.++ +||.++ +++|. ++++.++.+.++. ...++-+..+.+..++.+..|+.---.....|-.+.+++|.+
T Consensus 190 ~~D~v~~~~tK~g~---~~~gAiv~gn~~~~~~a~~~rK~~Ggl~~k~r~laA~~~~~l~~~~~~~~~~Han~mA~~La~ 266 (342)
T COG2008 190 YVDSVSFCLTKGGG---APVGAIVFGNRDFAKRARRWRKRAGGLMRKARFLAAQGLYALEDDVWRLAADHANAMAARLAE 266 (342)
T ss_pred hCCEEEEecccCCc---ceeeeEEEcCHHHHHHHHHHHHHhcccHhhhhHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence 566666 556554 56765 4568888877653 245666777777777777777521111122333334777777
Q ss_pred HhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccCCCCEEEEeccCCCCHHHHHHHHHHHH
Q psy6547 176 ELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIII 255 (266)
Q Consensus 176 ~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~iR~~~~~~~t~~~i~~~~~~l~ 255 (266)
.+.. . +++....+...+ ++.+.+++. ..+.......+.+.|+...+.+ ..+||.++...+++|+++++..++
T Consensus 267 ~~~~-~--~G~~~~~~~~tN---~vf~~l~~~-~i~~l~~~~~~~~~~~~~~~~~-~~vRfvts~a~~~edv~~~~~~~~ 338 (342)
T COG2008 267 GLEA-K--PGVKLAFPVETN---MVFVRLPES-AIEALRLAGALFYRGVLIGAHG-EIVRFVTSWATSEEDVDELVAAIK 338 (342)
T ss_pred hhhh-c--CCceeccCCccc---EEEEECChH-HHHHHHhhchhheeeeeccCCC-ceEEEEeeccCCHHHHHHHHHHHH
Confidence 7775 2 223321223444 888888762 1233344445556666666553 689999999999999999999988
Q ss_pred HHH
Q psy6547 256 NTI 258 (266)
Q Consensus 256 ~~~ 258 (266)
+.+
T Consensus 339 ~~~ 341 (342)
T COG2008 339 ALL 341 (342)
T ss_pred Hhh
Confidence 764
No 290
>PRK08045 cystathionine gamma-synthase; Provisional
Probab=99.53 E-value=5.2e-13 Score=116.56 Aligned_cols=222 Identities=15% Similarity=0.094 Sum_probs=138.2
Q ss_pred CCceeecCCCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCccccccc
Q psy6547 18 PGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHY 97 (266)
Q Consensus 18 ~~v~~~~~~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~~~~~ 97 (266)
.++..++..|++++++++ .+++++|+++.++|++|.+. ++++|.++|+++|+++|+||+|.... ...+ . .
T Consensus 117 i~v~~vd~~d~e~l~~~l--~~~tklV~l~sP~NPtG~v~----di~~I~~ia~~~g~~vivDeay~~~~-~~~p--l-~ 186 (386)
T PRK08045 117 YRVLFVDQGDEQALRAAL--AEKPKLVLVESPSNPLLRVV----DIAKICHLAREAGAVSVVDNTFLSPA-LQNP--L-A 186 (386)
T ss_pred eEEEEeCCCCHHHHHHhc--ccCCeEEEEECCCCCCCEec----CHHHHHHHHHHcCCEEEEECCCCccc-cCCc--h-h
Confidence 356667767899999999 44689999999999999886 78999999999999999999995331 1111 1 2
Q ss_pred CCCCcCeeeecccccC--Cchhhhhhee-cHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHHH
Q psy6547 98 EDVRPDIVILGKALSG--GLYPISAVLA-DDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFR 174 (266)
Q Consensus 98 ~~~~~d~~~~sK~~~~--g~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~ 174 (266)
++.+..+.+++|+++| + ...|++++ ++++.+.+...........+++.+..+..+|+-+.. ..++..+++..+.
T Consensus 187 ~gaDivv~S~tK~l~G~~d-~~~G~vi~~~~~~~~~l~~~~~~~g~~~~p~~~~l~~rgl~tl~~--R~~~~~~na~~la 263 (386)
T PRK08045 187 LGADLVLHSCTKYLNGHSD-VVAGVVIAKDPDVVTELAWWANNIGVTGGAFDSYLLLRGLRTLVP--RMELAQRNAQAIV 263 (386)
T ss_pred hCCCEEEeecceeccCCCC-ceeEEEEeCcHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhccHHH--HHHHHHHHHHHHH
Confidence 3444445559999984 4 45777766 566666554333344455777777777776654322 2344444555555
Q ss_pred HHhhcccc------cCCCccc---------EEecCccceeeEEEEeeCccchHHHHHHHHHHCCceec----------cC
Q psy6547 175 SELSSPAN------KSKASFK---------LSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTK----------PI 229 (266)
Q Consensus 175 ~~l~~~~~------~~~~~~~---------~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~----------~~ 229 (266)
+.|+. -+ .+.+... ..+.|. ++.|.+.. +.....+|++.|.=-.+.+. |.
T Consensus 264 ~~L~~-~p~v~~V~yp~l~~~p~~~~~~~~~~g~g~---~~s~~~~~-~~~~~~~f~~~l~~~~~~~s~G~~~sl~~~~~ 338 (386)
T PRK08045 264 KYLQT-QPLVKKLYHPSLPENQGHEIAARQQKGFGA---MLSFELDG-DEQTLRRFLGGLSLFTLAESLGGVESLISHAA 338 (386)
T ss_pred HHHHc-CCCEeEEECCCCCCCcCHHHHHHhCCCCCc---eEEEEecC-cHHHHHHHHHhccceeEeccCCCCceeEeCCC
Confidence 55554 21 1222211 235577 89999964 12234567766652111111 10
Q ss_pred -----------------CCCEEEEeccCCCCHHHHHHHHHHHHHHHHHH
Q psy6547 230 -----------------SNNIIRLSPALNITEQELREGLDIIINTINTM 261 (266)
Q Consensus 230 -----------------~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~ 261 (266)
..+.+|+|..+. +.+.+++.|+++++..
T Consensus 339 ~~~~~~~~~~~~~~~gi~~~liR~svGlE----~~~dl~~dl~~al~~~ 383 (386)
T PRK08045 339 TMTHAGMAPEARAAAGISETLLRISTGIE----DGEDLIADLENGFRAA 383 (386)
T ss_pred CcccccCCHHHHHhcCCCCCeEEEEeCcC----CHHHHHHHHHHHHHHh
Confidence 247899996655 4566666777666543
No 291
>TIGR02080 O_succ_thio_ly O-succinylhomoserine (thiol)-lyase. This family consists of O-succinylhomoserine (thiol)-lyase, one of three different enzymes designated cystathionine gamma-synthase and involved in methionine biosynthesis. In all three cases, sulfur is added by transsulfuration from Cys to yield cystathionine rather than by a sulfhydrylation step that uses H2S directly and bypasses cystathionine.
Probab=99.53 E-value=3.4e-13 Score=117.58 Aligned_cols=220 Identities=15% Similarity=0.099 Sum_probs=138.1
Q ss_pred CCceeecCCCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCccccccc
Q psy6547 18 PGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHY 97 (266)
Q Consensus 18 ~~v~~~~~~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~~~~~ 97 (266)
.++..++..|++++++++ .+++++|+++.++|++|.+. ++++|.++|+++|+++|+|++|..+.. ..+ . .
T Consensus 116 ~~v~~~d~~d~~~l~~ai--~~~tklV~l~~p~NPtG~~~----dl~~I~~la~~~g~~vvvD~a~~~~~~-~~p--l-~ 185 (382)
T TIGR02080 116 FRVLFVDQGDEQALRAAL--AQKPKLVLIETPSNPLLRVV----DIAKICHLAKAVGAVVVVDNTFLSPAL-QNP--L-A 185 (382)
T ss_pred eEEEEECCCCHHHHHHhc--CcCceEEEEECCCCCCCEec----CHHHHHHHHHHcCCEEEEECCCccccc-CCc--h-h
Confidence 456666667899999999 44689999999999999886 789999999999999999999953211 111 1 1
Q ss_pred CCCCcCeeeecccccC--Cchhhhhhee-cHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHHH
Q psy6547 98 EDVRPDIVILGKALSG--GLYPISAVLA-DDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFR 174 (266)
Q Consensus 98 ~~~~~d~~~~sK~~~~--g~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~ 174 (266)
.+.+..+.+++|.++| + .+.|+++. ++++.+.+...........+++.+..++..++.+.. ..++..+++..+.
T Consensus 186 ~gaDivv~S~sK~l~G~~~-~~~G~i~~~~~~~~~~l~~~~~~~g~~~sp~~a~l~lr~l~tl~~--R~~~~~~na~~~a 262 (382)
T TIGR02080 186 LGADLVLHSCTKYLNGHSD-VIAGAVIAKDPQVAEELAWWANNLGVTGGAFDSYLTLRGLRTLVA--RMRLQQRNAQAIV 262 (382)
T ss_pred hCCCEEEeecceeccCCCC-ceeEEEEeCCHHHHHHHHHHHHccCCCCCHHHHHHHHcccchHHH--HHHHHHHHHHHHH
Confidence 2444444559999973 5 57888766 566666665443444556778877777666654332 2344445666666
Q ss_pred HHhhcccc------cCCCccc---------EEecCccceeeEEEEeeCccchHHHHHHHHHHCCceec----------cC
Q psy6547 175 SELSSPAN------KSKASFK---------LSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTK----------PI 229 (266)
Q Consensus 175 ~~l~~~~~------~~~~~~~---------~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~----------~~ 229 (266)
+.|+. -+ .+.+... ..+.|. ++.|++... .....+|++.|.=-.+.+. |.
T Consensus 263 ~~L~~-~p~v~~V~yP~l~~~~~~~~~~~~~~g~g~---~~s~~~~~~-~~~~~~f~~~l~~~~~~~s~G~~~sl~~~p~ 337 (382)
T TIGR02080 263 EYLQT-QPLVKKIYYPGLPDHPGHEIAARQQKGFGA---MLSFELKGG-EQTVRRFLGGLSLFTLAESLGGVESLIAHPA 337 (382)
T ss_pred HHHHh-CCCeeEEECCCCCCCccHHHHHhhCCCCCc---eEEEEecCc-HHHHHHHHHcCCcceEeccCCCCcceeECCC
Confidence 66664 21 1222211 235577 999999641 1234566666542111111 10
Q ss_pred -----------------CCCEEEEeccCCCCHHHHHHHHHHHHHHHH
Q psy6547 230 -----------------SNNIIRLSPALNITEQELREGLDIIINTIN 259 (266)
Q Consensus 230 -----------------~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~ 259 (266)
..+.||+|..+. +.+.+++.|+++++
T Consensus 338 ~~~~~~~~~~~~~~~gi~~~liRlsvGlE----~~~dl~~dl~~al~ 380 (382)
T TIGR02080 338 TMTHAAMGPEARAEAGISDTLLRLSVGLE----DADDLIADLEQGLR 380 (382)
T ss_pred ccCcccCCHHHHHhcCCCcCeEEEEeccC----CHHHHHHHHHHHHh
Confidence 236899995554 45666777777665
No 292
>PRK07582 cystathionine gamma-lyase; Validated
Probab=99.52 E-value=7.5e-13 Score=114.95 Aligned_cols=215 Identities=14% Similarity=0.060 Sum_probs=132.0
Q ss_pred CCCCCceeecCCCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCcccc
Q psy6547 15 PHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLA 94 (266)
Q Consensus 15 ~~~~~v~~~~~~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~~ 94 (266)
.++.+++.++.++... .+ .+++++++++.++|++|.+. ++++|.++|+++|+++|+|++|... .|.. .
T Consensus 112 ~~G~~v~~v~~~~~~~---~~--~~~t~lV~le~p~NPtg~v~----di~~I~~~a~~~g~~lvVD~t~~~~--~~~~-p 179 (366)
T PRK07582 112 PLGVTVREAPTAGMAE---AA--LAGADLVLAETPSNPGLDVC----DLAALAAAAHAAGALLVVDNTTATP--LGQR-P 179 (366)
T ss_pred cCeEEEEEECCCChHH---Hh--ccCceEEEEECCCCCCCCcc----CHHHHHHHHHHcCCEEEEECCCCCc--cccC-c
Confidence 3577888888765432 22 34689999998888888765 8999999999999999999999421 1221 1
Q ss_pred cccCCCCcCeeeecccccC--Cchhhhhhee-cHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHhhccHHHHHHHHHH
Q psy6547 95 IHYEDVRPDIVILGKALSG--GLYPISAVLA-DDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGE 171 (266)
Q Consensus 95 ~~~~~~~~d~~~~sK~~~~--g~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~ 171 (266)
.+ ++.+..+.+++|+++| | .++||+++ ++++.+.+...........+++.+..+...++.+ +-..++..+++.
T Consensus 180 ~~-~g~Divv~S~sK~l~G~~g-~~~G~v~~~~~~l~~~l~~~~~~~g~~~~~~~a~l~~r~l~tl--~~R~~~~~~na~ 255 (366)
T PRK07582 180 LE-LGADLVVASDTKALTGHSD-LLLGYVAGRDPELMAAVERWRLLAGAIPGPFEAWLAHRSLGTL--GLRFARQCANAL 255 (366)
T ss_pred hh-cCCcEEEecccccccCCCC-eeEEEEEcCcHHHHHHHHHHHHHhCCCCCHHHHHHHHhccccH--HHHHHHHHHHHH
Confidence 11 3434444448999974 6 67899887 4666666654333333445677766665555432 223355566777
Q ss_pred HHHHHhhccccc------CCCcccE---------EecCccceeeEEEEeeCccchHHHHHHHHHHCCceec-c-------
Q psy6547 172 IFRSELSSPANK------SKASFKL---------SSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTK-P------- 228 (266)
Q Consensus 172 ~l~~~l~~~~~~------~~~~~~~---------~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~-~------- 228 (266)
.+.+.|++ .+. +.++..+ .+.|. ++.|++++ .++..+.+...+++.. +
T Consensus 256 ~la~~L~~-~p~v~~v~yp~l~~~p~~~~~~~~~~~~gg---~~s~~~~~-----~~~~~~~~~~l~~~~~~~s~G~~~s 326 (366)
T PRK07582 256 AVAELLAG-HPAVRGVRYPGLPGDPAHEVAARQMRRFGG---LVSFELAD-----AAAAERFVAASRLVVAATSFGGVHT 326 (366)
T ss_pred HHHHHHHh-CCCccEEECCCCCCCccHHHHHhhCCCCcc---eEEEEeCC-----HHHHHHHHHhCCcceecccCCCccc
Confidence 77777776 331 2222211 13566 89999854 3334444444454432 0
Q ss_pred -----------CCCCEEEEeccCCCCHHHHHHHHHHH
Q psy6547 229 -----------ISNNIIRLSPALNITEQELREGLDII 254 (266)
Q Consensus 229 -----------~~~~~iR~~~~~~~t~~~i~~~~~~l 254 (266)
...+.||+|+++..+++.++.+.++|
T Consensus 327 l~~~~~~~~~~~~~~liR~svGlE~~~dli~dl~~al 363 (366)
T PRK07582 327 SADRRARWGDAVPEGFVRLSCGIEDTDDLVADLERAL 363 (366)
T ss_pred hhhhHHHcCCCCCCCeEEEEeccCCHHHHHHHHHHHH
Confidence 12368999988876655555544444
No 293
>PRK07811 cystathionine gamma-synthase; Provisional
Probab=99.52 E-value=3.8e-13 Score=117.61 Aligned_cols=225 Identities=13% Similarity=0.151 Sum_probs=137.0
Q ss_pred CCCCCCceeecCCCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCccc
Q psy6547 14 GPHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLL 93 (266)
Q Consensus 14 ~~~~~~v~~~~~~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~ 93 (266)
..++.+++.++..|++++++.+ .+++++|+++.++|++|.+. ++++|.++|+++|+++|+|++|... ..+.+
T Consensus 122 ~~~gi~~~~~d~~d~e~l~~~i--~~~tklV~ie~p~NPtg~~~----dl~~I~~la~~~gi~lIvD~a~a~~-~~~~p- 193 (388)
T PRK07811 122 TRWGVEYTPVDLSDLDAVRAAI--TPRTKLIWVETPTNPLLSIT----DIAALAELAHDAGAKVVVDNTFASP-YLQQP- 193 (388)
T ss_pred cCCCeEEEEeCCCCHHHHHHhc--CcCCeEEEEECCCCCcceec----CHHHHHHHHHHcCCEEEEECCCCcc-ccCCc-
Confidence 3456778888888999999999 44789999998888888776 9999999999999999999999532 11222
Q ss_pred ccccCCCCcCeeeecccccC-Cchhhhhheec-HHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHhhccHHHHHHHHHH
Q psy6547 94 AIHYEDVRPDIVILGKALSG-GLYPISAVLAD-DEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGE 171 (266)
Q Consensus 94 ~~~~~~~~~d~~~~sK~~~~-g~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~ 171 (266)
. ..+.+..+.+++|+++| |-.+.|+++++ +++.+.+...........++..+..+...|+.+ +...++..++..
T Consensus 194 -~-~~gaDivv~S~sK~l~g~~~~~gG~vv~~~~~l~~~~~~~~~~~g~~~s~~~a~l~~~~L~tl--~~R~~~~~~na~ 269 (388)
T PRK07811 194 -L-ALGADVVVHSTTKYIGGHSDVVGGALVTNDEELDEAFAFLQNGAGAVPGPFDAYLTLRGLKTL--AVRMDRHSENAE 269 (388)
T ss_pred -h-hhCCcEEEecCceeecCCCCcEEEEEEECCHHHHHHHHHHHHhcCCCCCHHHHHHHHhccCcH--HHHHHHHHHHHH
Confidence 1 12334444558899985 21356887774 555554443222223334555554444444432 223455556777
Q ss_pred HHHHHhhccccc------CCCcc---------cEEecCccceeeEEEEeeCccchHHHHHHHHHH--CCc--------ee
Q psy6547 172 IFRSELSSPANK------SKASF---------KLSSGGLKKSINTLILSVSAILEVYDVCIKMKD--AGL--------VT 226 (266)
Q Consensus 172 ~l~~~l~~~~~~------~~~~~---------~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~--~gi--------~~ 226 (266)
.+.+.|++ .+. +.... ...+.|. ++.|++... .....+|.+.|.= .+. +.
T Consensus 270 ~la~~L~~-~p~v~~V~yP~l~~~~~~~~~~~~~~g~g~---~~s~~~~~~-~~~~~~f~~~l~~~~~~~s~G~~~sl~~ 344 (388)
T PRK07811 270 AVAEFLAG-HPEVSTVLYPGLPSHPGHEVAARQMRGFGG---MVSVRLAGG-EEAARDFCARTKVFTLAESLGGVESLIE 344 (388)
T ss_pred HHHHHHHh-CCCeeEEECCCCCCCchHHHHHHhcCCCCc---eEEEEeCCC-HHHHHHHHHhCCcceeeccCCCCcceEe
Confidence 77777775 321 12211 0224577 999999641 2345566666542 111 11
Q ss_pred ccC--------------CCCEEEEeccCCCCHHHHHHHHHHHHHHHH
Q psy6547 227 KPI--------------SNNIIRLSPALNITEQELREGLDIIINTIN 259 (266)
Q Consensus 227 ~~~--------------~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~ 259 (266)
.|. ..+.||+|+.+. |.+.+++.|.++++
T Consensus 345 ~~~~~~~~~~~~~~~gi~~~liR~svGlE----~~~dl~~dl~~al~ 387 (388)
T PRK07811 345 HPSAMTHASTAGSQLEVPDDLVRLSVGIE----DVADLLADLEQALG 387 (388)
T ss_pred CCcccCcccCCHhhcCCCCCEEEEEeCCC----CHHHHHHHHHHHhh
Confidence 110 146899996655 45556666666653
No 294
>PRK11706 TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisional
Probab=99.52 E-value=8.8e-13 Score=115.05 Aligned_cols=225 Identities=16% Similarity=0.166 Sum_probs=140.6
Q ss_pred CCCCCCceeecC------CCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcC
Q psy6547 14 GPHMPGYNIIPY------NDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLG 87 (266)
Q Consensus 14 ~~~~~~v~~~~~------~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~ 87 (266)
.-.+.+++.++. .|++++++.+ .+++++|++.+ ++|... ++++|.++|+++|++||+|++|+...
T Consensus 89 ~~~G~~~v~~d~d~~~~~~d~~~le~~i--~~~tk~i~~~~---~~G~~~----~~~~i~~la~~~~i~vIeD~a~a~g~ 159 (375)
T PRK11706 89 VLRGAKIVFVDIRPDTMNIDETLIEAAI--TPKTRAIVPVH---YAGVAC----EMDTIMALAKKHNLFVVEDAAQGVMS 159 (375)
T ss_pred HHcCCEEEEEecCCCcCCcCHHHHHHhc--CCCCeEEEEeC---CCCCcc----CHHHHHHHHHHcCCEEEEECcccccc
Confidence 334566666652 3789999999 44678888653 356554 78999999999999999999995332
Q ss_pred C-cCcccccccCCCCcCeeeec----ccccCCchhhhhheecHHhhhccCCCC---------------------CCCCCC
Q psy6547 88 R-TGKLLAIHYEDVRPDIVILG----KALSGGLYPISAVLADDEVMGTLVPGT---------------------HGSTYG 141 (266)
Q Consensus 88 ~-~g~~~~~~~~~~~~d~~~~s----K~~~~g~~~~g~~~~~~~~~~~~~~~~---------------------~~~~~~ 141 (266)
. .|.. .+-..|+.+|| |.+++| .+.+++..++++.+.++... .+.++-
T Consensus 160 ~~~~~~-----~g~~~~~~~~Sf~~~K~l~~g-~gG~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~ 233 (375)
T PRK11706 160 TYKGRA-----LGTIGHIGCFSFHETKNYTAG-EGGALLINDPALIERAEIIREKGTNRSQFFRGQVDKYTWVDIGSSYL 233 (375)
T ss_pred ccCCee-----eecCcCEEEEeCCCCcccccc-CCeEEEECCHHHHHHHHHHHHcCCCcchhhccCCCcceeeecccccC
Confidence 1 1211 12234777777 999877 56666776777665433111 112233
Q ss_pred CcHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccc---CCCcccEEecCccceeeEEEEeeCccchHHHHHHH
Q psy6547 142 GNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSSPANK---SKASFKLSSGGLKKSINTLILSVSAILEVYDVCIK 218 (266)
Q Consensus 142 ~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~---~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 218 (266)
.+.+.++.+...++.+ +...++.+++.+.+++.|.. +.. ..++....+.....+++++.+++ +.+..++.+.
T Consensus 234 ~~~~~aa~~~~ql~~l--~~~~~~R~~~~~~~~~~L~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~r~~l~~~ 308 (375)
T PRK11706 234 PSELQAAYLWAQLEAA--DRINQRRLALWQRYYDALAP-LAEAGRIELPSIPDDCKHNAHMFYIKLRD--LEDRSALINF 308 (375)
T ss_pred cCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhcC-CCcCCeeecCCCCCCCceeeEEEEEEECC--cCCHHHHHHH
Confidence 3445555555555543 44566777778888888877 431 11111011100111256666654 4568899999
Q ss_pred HHHCCceeccC--------------------------CCCEEEEeccCCCCHHHHHHHHHHHHHHH
Q psy6547 219 MKDAGLVTKPI--------------------------SNNIIRLSPALNITEQELREGLDIIINTI 258 (266)
Q Consensus 219 l~~~gi~~~~~--------------------------~~~~iR~~~~~~~t~~~i~~~~~~l~~~~ 258 (266)
|.++||.++.. ..+.+.+-++...+++|++..++.|.+++
T Consensus 309 L~~~gI~~~~~~~p~~~~~~~~~~~~~~~~~p~a~~~~~~~l~lP~~~~l~~~~~~~i~~~i~~~~ 374 (375)
T PRK11706 309 LKEAGIMAVFHYIPLHSSPAGERFGRFHGEDRYTTKESERLLRLPLFYNLTDVEQRTVIDTILEFF 374 (375)
T ss_pred HHHCCCCccccCCccCcchhhHhcCCCCCCChHHHHHHhCcEeccCCCCCCHHHHHHHHHHHHHHh
Confidence 99999986421 11335555566789999999999998764
No 295
>PRK07050 cystathionine beta-lyase; Provisional
Probab=99.52 E-value=5.1e-13 Score=116.96 Aligned_cols=228 Identities=12% Similarity=0.064 Sum_probs=135.3
Q ss_pred CCCCCCceeecCCCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCccc
Q psy6547 14 GPHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLL 93 (266)
Q Consensus 14 ~~~~~~v~~~~~~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~ 93 (266)
..++.+++.++..+.+++++.+ .+++++|+++.+.|+++.. .++++|.++|+++|+++|+|++|.. |..+
T Consensus 126 ~~~Gi~v~~vd~~~~~~l~~~i--~~~tklV~le~p~Np~~~~----~di~~I~~ia~~~gi~livD~a~a~----~~~~ 195 (394)
T PRK07050 126 RDFGITVRFYDPLIGAGIADLI--QPNTRLIWLEAPGSVTMEV----PDVPAITAAARARGVVTAIDNTYSA----GLAF 195 (394)
T ss_pred HhcCeEEEEECCCCHHHHHHhc--CCCCeEEEEECCCCCCccH----hhHHHHHHHHHHcCCEEEEECCccc----cccc
Confidence 3457778888776778899998 4578999999888876554 4999999999999999999999942 1111
Q ss_pred ccccCCCCcCeeeecccccCCc-hhhhhhee-cHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHhhccHHHHHHHHHH
Q psy6547 94 AIHYEDVRPDIVILGKALSGGL-YPISAVLA-DDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGE 171 (266)
Q Consensus 94 ~~~~~~~~~d~~~~sK~~~~g~-~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~ 171 (266)
.-...|.+..+.+++|.++||. .+.|++++ ++++.+.++........+.++..+..+...++.+.. ..++..+++.
T Consensus 196 ~~l~~GaDi~v~S~tK~~~g~~~~~gG~v~~~~~~~~~~~~~~~~~~G~~~~~~~a~l~lr~l~tl~~--Rl~~~~~~a~ 273 (394)
T PRK07050 196 KPFEHGVDISVQALTKYQSGGSDVLMGATITADAELHAKLKLARMRLGIGVSADDCSLVLRGLPSLQV--RLAAHDRSAL 273 (394)
T ss_pred CHHHcCCeEEEEECCceecCCCCeeEEEEEECCHHHHHHHHHHHHhcCCCCCHHHHHHHHcCCCcHHH--HHHHHHHHHH
Confidence 1111243344556999998540 35777665 667766665332322334455544333332322211 2333334444
Q ss_pred HHHHHhhcccc------cCCCcc---------cEEecCccceeeEEEEeeC-ccchHHHHHHHHHHCCceeccC------
Q psy6547 172 IFRSELSSPAN------KSKASF---------KLSSGGLKKSINTLILSVS-AILEVYDVCIKMKDAGLVTKPI------ 229 (266)
Q Consensus 172 ~l~~~l~~~~~------~~~~~~---------~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~l~~~gi~~~~~------ 229 (266)
.+.+.|++ .+ .+.+.. ...+.|. ++.|++... +..+..+|++.|...++.+..+
T Consensus 274 ~la~~L~~-~p~v~~v~~p~l~~~p~~~~~~~~~~~~g~---~~s~~l~~~~~~~~~~~~~~~l~~~~~~~s~G~~~sl~ 349 (394)
T PRK07050 274 EVAEWLKA-RPEIATVLHPALPDCPGHAFWMRDFTGAGG---LFSVVFDERYSPAQVDAFVEALELFAIGWSWGGACSLA 349 (394)
T ss_pred HHHHHHHh-CCCccEEECCCCCCCccHHHHHHhCCCCce---EEEEEECCCCCHHHHHHHHHcCCCCeeccccCCccceE
Confidence 55555554 21 111111 0124466 888888642 1345778888887665533221
Q ss_pred ---------------CCCEEEEeccCCCCHHHHHHHHHHHHHHHHHH
Q psy6547 230 ---------------SNNIIRLSPALNITEQELREGLDIIINTINTM 261 (266)
Q Consensus 230 ---------------~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~ 261 (266)
.++.||+|+.+. +.+.+++.|.++++..
T Consensus 350 ~~~~~~~~~~~~~~~~~~~iR~svGlE----~~~dl~~dl~~al~~~ 392 (394)
T PRK07050 350 MPYDVASMRTAKWPHRGTLVRLYIGLE----DEADLIADLEQALEAA 392 (394)
T ss_pred eeCcccccchhhcCCCCCEEEEEeCcC----CHHHHHHHHHHHHHHh
Confidence 126799996655 4555666666666543
No 296
>PLN02509 cystathionine beta-lyase
Probab=99.51 E-value=4.7e-13 Score=118.68 Aligned_cols=223 Identities=11% Similarity=0.120 Sum_probs=136.9
Q ss_pred CCCCCceeecCCCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCcccc
Q psy6547 15 PHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLA 94 (266)
Q Consensus 15 ~~~~~v~~~~~~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~~ 94 (266)
..+..++.++..|++++++.+ .+++++|+++.+.|++|.+. ++++|.++|++||+++|+|++|.. +..+..
T Consensus 194 ~~G~~v~~vd~~d~e~l~~ai--~~~TklV~lesPsNPtG~i~----Dl~~I~~lAk~~g~~lIVD~A~a~-~~~~~p-- 264 (464)
T PLN02509 194 RSGVVVKRVNTTNLDEVAAAI--GPQTKLVWLESPTNPRQQIS----DIRKIAEMAHAQGALVLVDNSIMS-PVLSRP-- 264 (464)
T ss_pred HCCeEEEEeCCCCHHHHHHhC--CcCCeEEEEECCCCCCCCHH----HHHHHHHHHHHcCCEEEEECCccc-cccCCh--
Confidence 346778888888999999999 55789999999999999876 999999999999999999999832 112221
Q ss_pred cccCCCCcCeeeecccccCC-chhhhhheec-HHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHhhccHHHHHHHHHHH
Q psy6547 95 IHYEDVRPDIVILGKALSGG-LYPISAVLAD-DEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEI 172 (266)
Q Consensus 95 ~~~~~~~~d~~~~sK~~~~g-~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~ 172 (266)
. ..+.+..+.+++|+++|. -.-.|++..+ +.+.+.+...........++..+..+...|+.+ +...++..+++..
T Consensus 265 l-~~gaDivv~S~tK~l~G~gdv~gG~v~~~~~~l~~~~~~~~~~~g~~l~p~~A~l~lr~L~tL--~~R~~r~~~nA~~ 341 (464)
T PLN02509 265 L-ELGADIVMHSATKFIAGHSDVMAGVLAVKGEKLAKEVYFLQNSEGSGLAPFDCWLCLRGIKTM--ALRIEKQQENARK 341 (464)
T ss_pred h-hcCCcEEEecCcccccCCCccceeEEEeccHHHHHHHHHHHHhcCCCcCHHHHHHHHhhhhhH--HHHHHHHHHHHHH
Confidence 1 123344444588999852 0124555553 333333221111112234666777777666654 2345666667777
Q ss_pred HHHHhhcccc------cCCCccc---------EEecCccceeeEEEEeeCccchHHHHHHHHHHCCceec----------
Q psy6547 173 FRSELSSPAN------KSKASFK---------LSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTK---------- 227 (266)
Q Consensus 173 l~~~l~~~~~------~~~~~~~---------~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~---------- 227 (266)
+.+.|++ .+ .+.++.. ..+.|. ++.|.+.. ...+..|++.|.=-.+.+.
T Consensus 342 la~~L~~-~p~V~~V~yPgL~~~p~~~l~~~~~~g~gg---~~sf~~~~--~~~~~~f~~~l~l~~~a~slG~~~SLi~~ 415 (464)
T PLN02509 342 IAMYLSS-HPRVKKVYYAGLPDHPGHHLHFSQAKGAGS---VFSFITGS--VALSKHLVETTKYFSIAVSFGSVKSLISM 415 (464)
T ss_pred HHHHHhc-CCCccEEECCCCCCCccHHHHHHhCCCCce---EEEEEeCC--HHHHHHHHHcCCcceEcccCCCCCceeeC
Confidence 7777775 22 1222211 124466 89998843 3345566666541111111
Q ss_pred cC-----------------CCCEEEEeccCCCCHHHHHHHHHHHHHHHH
Q psy6547 228 PI-----------------SNNIIRLSPALNITEQELREGLDIIINTIN 259 (266)
Q Consensus 228 ~~-----------------~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~ 259 (266)
|. ..+.||+|..+. +.+.+++.|+++++
T Consensus 416 p~~~sh~~~~~~~~~~~Gi~~~liRlSvGlE----~~~DLi~Dl~~Al~ 460 (464)
T PLN02509 416 PCFMSHASIPAEVREARGLTEDLVRISAGIE----DVDDLISDLDIAFR 460 (464)
T ss_pred CcccccccCCHHHHHhcCCCCCeEEEEeccC----CHHHHHHHHHHHHc
Confidence 10 247899996554 55666777777664
No 297
>PRK07269 cystathionine gamma-synthase; Reviewed
Probab=99.51 E-value=2.7e-13 Score=117.40 Aligned_cols=208 Identities=17% Similarity=0.161 Sum_probs=129.5
Q ss_pred CCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCcccccccCCCCcCee
Q psy6547 26 NDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIV 105 (266)
Q Consensus 26 ~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~~~~~~~~~~d~~ 105 (266)
.|++++++.+ .+++++|+++.+.|++|.+. ++++|+++|+++|+++|+|++|..- ..+. ..+...|++
T Consensus 124 ~d~~~l~~~i--~~~TklV~lesP~NPtg~~~----di~~I~~la~~~gi~vvvD~t~~~~-~~~~-----pl~~gaDiv 191 (364)
T PRK07269 124 NTEEELIAAI--EEDTDIVYIETPTNPLMVEF----DIEKVAKLAHAKGAKVIVDNTFYSP-IYQR-----PIELGADIV 191 (364)
T ss_pred CCHHHHHHhc--CcCceEEEEECCCCCCCeee----CHHHHHHHHHHcCCEEEEECCCccc-ccCC-----chhhCCcEE
Confidence 4799999999 45789999999999998887 9999999999999999999997321 1111 123345555
Q ss_pred e--ecccccCCc-hhhhhhee-cHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccc
Q psy6547 106 I--LGKALSGGL-YPISAVLA-DDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSSPA 181 (266)
Q Consensus 106 ~--~sK~~~~g~-~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~ 181 (266)
+ ++|.++|.. .-.|++++ ++++.+.+...........+++.+..+...|+.+ +...++..++...+.+.|+. -
T Consensus 192 v~S~tK~l~g~~d~~gG~v~~~~~~l~~~~~~~~~~~G~~~s~~~a~l~~~~L~tL--~~r~~~~~~na~~~a~~L~~-~ 268 (364)
T PRK07269 192 LHSATKYLSGHNDVLAGVVVTNDLELYEKLFYNLNTTGAVLSPFDSYLLMRGLKTL--SLRMERSTANAQEVVAFLKK-S 268 (364)
T ss_pred EecCceeccCCCcccceEEEeCcHHHHHHHHHHHHHhCCCCCHHHHHHHHcCCCcH--HHHHHHHHHHHHHHHHHHHh-C
Confidence 5 779998520 12466666 4566565542221222456777777776666543 22445556666677776665 2
Q ss_pred ccCCCc-ccEEecCccceeeEEEEeeCccchHHHHHHHHHHC----------CceeccC-----------------CCCE
Q psy6547 182 NKSKAS-FKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDA----------GLVTKPI-----------------SNNI 233 (266)
Q Consensus 182 ~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~----------gi~~~~~-----------------~~~~ 233 (266)
+ .+. ...++.|. ++.|.+.. .....+|.+.+.-. +++..|. ..+.
T Consensus 269 p--~v~~v~ypg~gg---~~sf~~~~--~~~~~~f~~~l~~~~~~~slG~~~sl~~~p~~~~~~~~~~~~r~~~Gi~~~l 341 (364)
T PRK07269 269 P--AVKEVLYTGKGG---MISFKVAD--ETRIPHILNSLKVFTFAESLGGVESLITYPTTQTHADIPAEVRHSYGLTDDL 341 (364)
T ss_pred C--CccEEeCCCcCc---EEEEEECC--HHHHHHHHHhCCcceEccCCCCcCeEeeCCcccccccCCHHHHHhcCCCCCe
Confidence 2 221 11245677 89999864 33445566555321 2233231 2468
Q ss_pred EEEeccCCCCHHHHHHHHHHHHHHHH
Q psy6547 234 IRLSPALNITEQELREGLDIIINTIN 259 (266)
Q Consensus 234 iR~~~~~~~t~~~i~~~~~~l~~~~~ 259 (266)
+|+|..+. +.+.+++.|+++++
T Consensus 342 iRlsvGlE----~~~dli~dl~~al~ 363 (364)
T PRK07269 342 LRLSIGIE----DARDLIADLKQALE 363 (364)
T ss_pred EEEEeccC----CHHHHHHHHHHHhc
Confidence 99996554 45666777776653
No 298
>PRK05355 3-phosphoserine/phosphohydroxythreonine aminotransferase; Provisional
Probab=99.51 E-value=8.2e-13 Score=114.36 Aligned_cols=208 Identities=13% Similarity=0.067 Sum_probs=145.7
Q ss_pred HHHHH-HHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCcccccccCCCCcCeeee
Q psy6547 29 DALEA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVIL 107 (266)
Q Consensus 29 ~~l~~-~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~~~~~~~~~~d~~~~ 107 (266)
.++++ .+ ++++++|.+.++.+++|... + ++++| +|+++++|-+++ ++ +.....+.++ .-+.+.
T Consensus 131 ~~~~~~~l--~~~~~~V~~th~eTstGv~~-~--~i~~i------~g~l~vVDavss-~g--~~~idv~~~d--~~~~ss 194 (360)
T PRK05355 131 PPLDEWQL--SDDAAYVHYTSNETIDGTEF-H--ELPDT------GDVPLVADMSSD-IL--SRPIDVSKFG--LIYAGA 194 (360)
T ss_pred CChhhccC--CCCCCEEEEccCCCcceEec-C--ccccc------CCCcEEEEcCcc-cc--CccCCHHHcc--EEEEec
Confidence 34444 56 33679999999999999874 2 34444 899999999995 32 2333444432 223335
Q ss_pred cccccCCchhhhhheecHHhhhccCCC------------CCCCCCCCcHHHHHHHHHHHHHHhhc----cHHHHHHHHHH
Q psy6547 108 GKALSGGLYPISAVLADDEVMGTLVPG------------THGSTYGGNPLACKLAMTALDVILEE----NMIENAYKMGE 171 (266)
Q Consensus 108 sK~~~~g~~~~g~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~a~~~~l~~~~~~----~~~~~~~~~~~ 171 (266)
.|+++ . ..+|++..++++.+.+.+. .....++++.....+..++|+.+..+ ++.++.+++.+
T Consensus 195 qK~lg-P-~Glg~l~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~Tp~~~~i~aL~~aL~~i~~~gG~e~i~~r~~~l~~ 272 (360)
T PRK05355 195 QKNIG-P-AGLTIVIVREDLLGRALPSIPSMLDYKTHADNDSMYNTPPTFAIYLAGLVFKWLKEQGGVAAMEKRNQEKAA 272 (360)
T ss_pred ccccc-C-CceEEEEECHHHHhhcccCCChHHHHHHHHhcCCccCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 59997 3 4489999999988776651 11223566777788888999988765 47788888999
Q ss_pred HHHHHhhcccccC-CCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccCC--CCEEEEeccCCCCHHHHH
Q psy6547 172 IFRSELSSPANKS-KASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPIS--NNIIRLSPALNITEQELR 248 (266)
Q Consensus 172 ~l~~~l~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~--~~~iR~~~~~~~t~~~i~ 248 (266)
++++.|++ ++.. .+.......+. ++.|.++. ..+..++.+.+.++|+...++. .+.+|+|+...+|.+|++
T Consensus 273 ~l~~~l~~-~~~~~~~~~~~~rs~~---v~sf~~~~--~~~~~~~~~~~~~~Gi~~~~~~~~~g~vRiS~~~~nt~eei~ 346 (360)
T PRK05355 273 LLYDAIDS-SDFYRNPVAPEDRSRM---NVPFTLAD--EELDKKFLAEAKAAGLVGLKGHRSVGGMRASIYNAMPLEGVQ 346 (360)
T ss_pred HHHHHHHh-CCCcccCCChhhcCCc---EEEEEcCC--hHHHHHHHHHHHHCCCcccCCCCccCcEEEECCCCCCHHHHH
Confidence 99999998 6531 11110112234 68888776 4444678788899999986553 478999999999999999
Q ss_pred HHHHHHHHHHHH
Q psy6547 249 EGLDIIINTINT 260 (266)
Q Consensus 249 ~~~~~l~~~~~~ 260 (266)
++++.|++++..
T Consensus 347 ~l~~~l~~~~~~ 358 (360)
T PRK05355 347 ALVDFMKEFERR 358 (360)
T ss_pred HHHHHHHHHHHh
Confidence 999999998765
No 299
>PRK05367 glycine dehydrogenase; Provisional
Probab=99.50 E-value=2.2e-12 Score=122.84 Aligned_cols=240 Identities=14% Similarity=0.131 Sum_probs=150.6
Q ss_pred cccccCCCCCCceeecCC-----CHHHHHHHHhcC-CCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEecc
Q psy6547 9 SYNEFGPHMPGYNIIPYN-----DVDALEAKLKSN-PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEV 82 (266)
Q Consensus 9 ~~~~~~~~~~~v~~~~~~-----d~~~l~~~l~~~-~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~ 82 (266)
..+.....+-+|+.++.+ |+++|++.++++ .++++|++....+. |.+. +++++|+++|+++|+++++|.+
T Consensus 603 np~sa~~~G~~vv~v~~d~~G~iD~~~L~~~i~~~~~~la~V~it~pst~-G~~e---~~I~eI~~i~h~~G~~v~VDgA 678 (954)
T PRK05367 603 NPASAVMAGMKVVVVACDENGNIDLDDLRAKAEEHADNLAAIMITYPSTH-GVFE---ETIREICEIVHEHGGQVYLDGA 678 (954)
T ss_pred hHHHHHHCCCEEEEECCCCCCCcCHHHHHHHHhccCCCeEEEEEEcCCCC-eeec---CCHHHHHHHHHHcCCEEEEECc
Confidence 334455667788888864 689999999664 35777776654443 4331 3799999999999999999999
Q ss_pred cc-CcCCcCcccccccCCCCcCeeeec--cccc-----CCchhhhhheecHHhhhccCCCCC--------CCCCCCcHH-
Q psy6547 83 QT-GLGRTGKLLAIHYEDVRPDIVILG--KALS-----GGLYPISAVLADDEVMGTLVPGTH--------GSTYGGNPL- 145 (266)
Q Consensus 83 ~~-~~~~~g~~~~~~~~~~~~d~~~~s--K~~~-----~g~~~~g~~~~~~~~~~~~~~~~~--------~~~~~~~~~- 145 (266)
+. ++ .+-. ... ....|+++++ |+|+ || -.+|++.+.+.+...+..... ..+...++.
T Consensus 679 ~~~al--~~l~-~pg--~~GADi~~~s~HK~f~~P~G~GG-Pg~G~l~vr~~l~p~lpg~~v~~~~~~~~~g~v~ta~~g 752 (954)
T PRK05367 679 NMNAQ--VGLA-RPG--DIGADVSHLNLHKTFCIPHGGGG-PGVGPIGVKAHLAPFLPGHPVQIAGGETGIGAVSAAPFG 752 (954)
T ss_pred Chhhc--cCCC-Chh--hcCCCEEEecCcccCCCCcCCCC-CceEEEeecccccccCCCCccCcCCCCCCcCcchhHHHH
Confidence 94 22 1110 111 2356777755 9986 33 345677777665544443211 111222222
Q ss_pred ---HHHHHHHHHHHHhhccHHHHHH---HHHHHHHHHhhcccccCCCcc--cEEecCccceeeEEE-EeeCccchHHHHH
Q psy6547 146 ---ACKLAMTALDVILEENMIENAY---KMGEIFRSELSSPANKSKASF--KLSSGGLKKSINTLI-LSVSAILEVYDVC 216 (266)
Q Consensus 146 ---~~~a~~~~l~~~~~~~~~~~~~---~~~~~l~~~l~~~~~~~~~~~--~~~~~g~~~~~~~~~-~~~~~~~~~~~~~ 216 (266)
.+..+...+..++.+++.+..+ .+++++.++|++ .....+.. ....... ++.+. ++...+.+..++.
T Consensus 753 ~al~~~~a~~yi~~~G~~Glr~~a~~~~~~A~Yl~~~L~~-~~~~~~~~~~~~~~~e~---i~~~~~~~~~~g~~~~di~ 828 (954)
T PRK05367 753 SASILPISWMYIRMMGAEGLRQATEVAILNANYIAKRLKD-HYPVLYTGANGRVAHEC---ILDLRPLKESTGITVDDIA 828 (954)
T ss_pred HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHh-hcCccccCCCCCcccce---EEEeecccccCCCCHHHHH
Confidence 2223444555566666666655 789999999987 32111110 0011122 33332 2221134678999
Q ss_pred HHHHHCCceeccC---CCCEEEEeccCCCCHHHHHHHHHHHHHHHHHHh
Q psy6547 217 IKMKDAGLVTKPI---SNNIIRLSPALNITEQELREGLDIIINTINTMA 262 (266)
Q Consensus 217 ~~l~~~gi~~~~~---~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~~ 262 (266)
++|.+.|+..... ..+.+|+++....+++|+|++++.+..+..+..
T Consensus 829 krL~d~G~~~~t~~~pv~~~l~i~ptE~~s~~elDr~~~al~~i~~e~~ 877 (954)
T PRK05367 829 KRLIDYGFHAPTMSFPVAGTLMVEPTESESKAELDRFCDAMIAIRAEID 877 (954)
T ss_pred HHHHHCCCeEeecCCccCCEEEEEeeecCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999986432 368999999999999999999999998877653
No 300
>COG2873 MET17 O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism]
Probab=99.50 E-value=1.1e-12 Score=109.12 Aligned_cols=103 Identities=17% Similarity=0.169 Sum_probs=81.8
Q ss_pred cccCCCCCCceeecCCCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcC
Q psy6547 11 NEFGPHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTG 90 (266)
Q Consensus 11 ~~~~~~~~~v~~~~~~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g 90 (266)
..|.-++-+|.+|+.+|++.+++.+ ++++|+|++|...|+.+.+. ++++|.++|+++|+++|+|.+...
T Consensus 120 ~tl~~~Gi~v~fvd~~d~~~~~~aI--~~nTkavf~EtigNP~~~v~----Die~ia~iAh~~gvpliVDNT~at----- 188 (426)
T COG2873 120 HTLKRLGIEVRFVDPDDPENFEAAI--DENTKAVFAETIGNPGLDVL----DIEAIAEIAHRHGVPLIVDNTFAT----- 188 (426)
T ss_pred HHHHhcCcEEEEeCCCCHHHHHHHh--CcccceEEEEeccCCCcccc----CHHHHHHHHHHcCCcEEEecCCCc-----
Confidence 4567789999999999999999999 77899999999999999998 999999999999999999999842
Q ss_pred cccccccCCCCcCe--eeecccccCCchhhhhheecH
Q psy6547 91 KLLAIHYEDVRPDI--VILGKALSGGLYPISAVLADD 125 (266)
Q Consensus 91 ~~~~~~~~~~~~d~--~~~sK~~~~g~~~~g~~~~~~ 125 (266)
++.+.-.....|+ .+.+|+++|.--.+|.++...
T Consensus 189 -pyl~rP~~hGADIVvHS~TK~igGhGt~iGG~iVD~ 224 (426)
T COG2873 189 -PYLCRPIEHGADIVVHSATKYIGGHGTAIGGVIVDG 224 (426)
T ss_pred -ceecchhhcCCCEEEEeecccccCCccccceEEEeC
Confidence 2233333344555 459999994225666666543
No 301
>PRK08064 cystathionine beta-lyase; Provisional
Probab=99.50 E-value=2.3e-13 Score=119.08 Aligned_cols=222 Identities=14% Similarity=0.082 Sum_probs=133.9
Q ss_pred CCCCCceeecCCCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCcccc
Q psy6547 15 PHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLA 94 (266)
Q Consensus 15 ~~~~~v~~~~~~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~~ 94 (266)
.++.+++.++..|++++++.+ .+++++|+++.++|++|.+. ++++|.++|+++|+++|+|++|..+. ....
T Consensus 115 ~~G~~v~~v~~~d~~~l~~~l--~~~tklV~l~~p~NptG~~~----dl~~I~~la~~~g~~vvvD~a~~~~~-~~~~-- 185 (390)
T PRK08064 115 RFGIEHTFVDMTNLEEVAQNI--KPNTKLFYVETPSNPLLKVT----DIRGVVKLAKAIGCLTFVDNTFLTPL-LQKP-- 185 (390)
T ss_pred HcCCEEEEECCCCHHHHHHhc--CCCceEEEEECCCCCCcEec----cHHHHHHHHHHcCCEEEEECCCCccc-ccCc--
Confidence 367888999988999999999 45789999999999999887 89999999999999999999995321 1111
Q ss_pred cccCCCCcCeeeecccccCCc-hhhhhhee-cHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHhhccHHHHHHHHHHH
Q psy6547 95 IHYEDVRPDIVILGKALSGGL-YPISAVLA-DDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEI 172 (266)
Q Consensus 95 ~~~~~~~~d~~~~sK~~~~g~-~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~ 172 (266)
. .++.+..+.+++|.++|.. .-.|+++. ++++.+.++..........++..+..+...++.+ ....++..++...
T Consensus 186 ~-~~g~Divv~S~tK~~~G~~~~laG~~v~~~~~~~~~l~~~~~~~g~~~~~~~a~l~~~gl~tl--~~R~~~~~~~a~~ 262 (390)
T PRK08064 186 L-DLGADVVLHSATKFLAGHSDVLAGLAVVKDEELAQKLYFLQNSFGAVLGVQDCWLVLRGLKTL--HVRLEHSSETANK 262 (390)
T ss_pred h-hhCCcEEEeecceeccCCccceeEEEEeCCHHHHHHHHHHHHhcCCCCCHHHHHHHHcccCcH--HHHHHHHHHHHHH
Confidence 1 2344444455889997420 22465555 4567666654333223334444443333333221 1223333444555
Q ss_pred HHHHhhcccc------cCCCcc---------cEEecCccceeeEEEEeeCccchHHHHHHHHHHCCce---eccC-----
Q psy6547 173 FRSELSSPAN------KSKASF---------KLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLV---TKPI----- 229 (266)
Q Consensus 173 l~~~l~~~~~------~~~~~~---------~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~---~~~~----- 229 (266)
+.+.|++ .+ .+.+.. ...+.|. ++.|++.. ..+...|++. .+++ ++.+
T Consensus 263 la~~L~~-~~~v~~v~yp~l~~~p~~~~~~~~~~g~gg---~~sf~~~~--~~~~~~f~~~---l~l~~~~~s~G~~~sl 333 (390)
T PRK08064 263 IALYLQE-HPKVQNVYYPGLQTHLGFDIQQSQATSAGA---VLSFTLQS--EEAVRQFVSH---VKLPVFAVSLGAVESI 333 (390)
T ss_pred HHHHHhc-CCCcceEECCCCCCCccHHHHHHhCCCcce---EEEEEECC--HHHHHHHHHh---CCcceEcccCCCCcce
Confidence 5555554 22 111111 1224566 89999854 2233344433 3441 1111
Q ss_pred ----------------------CCCEEEEeccCCCCHHHHHHHHHHHHHH
Q psy6547 230 ----------------------SNNIIRLSPALNITEQELREGLDIIINT 257 (266)
Q Consensus 230 ----------------------~~~~iR~~~~~~~t~~~i~~~~~~l~~~ 257 (266)
..+.+|+|+.+.++++.++.+.++|+++
T Consensus 334 ~~~~~~~~h~~~~~~~~~~~gi~~~liR~SvGle~~~dli~dl~~Al~~~ 383 (390)
T PRK08064 334 LSYPAKMSHAAMPKEERDERGITDGLLRLSVGLENVDDLIADFEQALSYV 383 (390)
T ss_pred eECCcccccccCCHHHHHhcCCCCCeEEEEeccCCHHHHHHHHHHHHHhc
Confidence 1478999999888777777777777653
No 302
>PRK09028 cystathionine beta-lyase; Provisional
Probab=99.49 E-value=7.1e-13 Score=115.47 Aligned_cols=190 Identities=12% Similarity=0.018 Sum_probs=116.9
Q ss_pred CCCCCCceeecCCCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCccc
Q psy6547 14 GPHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLL 93 (266)
Q Consensus 14 ~~~~~~v~~~~~~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~ 93 (266)
..++.++..++..+.+++++++ .+++++|++|.+.|++|.+. ++++|+++|+++|+++|+|++|+. +...
T Consensus 122 ~~~Gi~v~~v~~~~~e~l~~~l--~~~TklV~lespsNPtg~v~----dl~~I~~la~~~g~~lvvD~t~a~----p~~~ 191 (394)
T PRK09028 122 KGFGIETTYYDPMIGEGIRELI--RPNTKVLFLESPGSITMEVQ----DVPTLSRIAHEHDIVVMLDNTWAS----PINS 191 (394)
T ss_pred hhcceEEEEECCCCHHHHHHhc--CcCceEEEEECCCCCCCcHH----HHHHHHHHHHHcCCEEEEECCccc----cccC
Confidence 3456677778777788899998 55799999999999887775 999999999999999999999952 1111
Q ss_pred ccccCCCCcCeeeecccccC--CchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHhhccHHHHHHHHHH
Q psy6547 94 AIHYEDVRPDIVILGKALSG--GLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGE 171 (266)
Q Consensus 94 ~~~~~~~~~d~~~~sK~~~~--g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~ 171 (266)
....+|.+..+.+.+|+++| . .-.|+++.++++.+.+...........+|..+..+...|+-+. -..++..+++.
T Consensus 192 ~Pl~~GaDivv~S~tK~l~Gh~d-~~~G~~~~~~~~~~~l~~~~~~~G~~~~p~~a~l~~rgl~TL~--lR~~~~~~na~ 268 (394)
T PRK09028 192 RPFEMGVDISIQAATKYIVGHSD-VMLGTATANEKHWDQLREHSYLMGQCTSPDDVYLAMRGLRTLG--VRLAQHEKNAL 268 (394)
T ss_pred CccccCceEEEEeCCeEecCCCC-EEEEEEECCHHHHHHHHHHHHhcCCCCCHHHHHHHHcccCcHH--HHHHHHHHHHH
Confidence 11134555555568899984 3 3456666666665544422222223456666655555444321 12333444555
Q ss_pred HHHHHhhcccc------cCCCcc---------cEEecCccceeeEEEEeeCccchHHHHHHHHH
Q psy6547 172 IFRSELSSPAN------KSKASF---------KLSSGGLKKSINTLILSVSAILEVYDVCIKMK 220 (266)
Q Consensus 172 ~l~~~l~~~~~------~~~~~~---------~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~ 220 (266)
.+.+.|++ -+ .+.++. ...+.|. ++.|.+...+.....+|++.|.
T Consensus 269 ~la~~L~~-~p~v~~V~yPgl~s~p~~~~~~~~~~g~gg---~~sf~l~~~~~~~~~~f~~~l~ 328 (394)
T PRK09028 269 KVANWLAT-RPEVDHVRHPAFETCPGHEFFKRDFSGSNG---LFSFVLKQGDPKAVTALVEGMQ 328 (394)
T ss_pred HHHHHHhc-CCCccEEECCCCCCCccHHHHHHhccCCCc---eEEEEECCCCHHHHHHHHHhCC
Confidence 55565554 21 122211 1224567 9999996311233556666664
No 303
>PRK08861 cystathionine gamma-synthase; Provisional
Probab=99.49 E-value=2.7e-13 Score=118.16 Aligned_cols=226 Identities=12% Similarity=0.042 Sum_probs=133.5
Q ss_pred CCCCceeecCCCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCccccc
Q psy6547 16 HMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAI 95 (266)
Q Consensus 16 ~~~~v~~~~~~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~~~ 95 (266)
.+.+++.++..|++++++++ .+++++|+++.++|++|.+. ++++|.++|+++|+++|+|++|... ....+ +
T Consensus 116 ~gi~v~~vd~~d~e~l~~~i--~~~tklV~lesP~NPtG~v~----dl~~I~~la~~~gi~vIvDea~~~~-~~~~p--l 186 (388)
T PRK08861 116 GDFKVQFVDQSDAAALDAAL--AKKPKLILLETPSNPLVRVV----DIAELCQKAKAVGALVAVDNTFLTP-VLQKP--L 186 (388)
T ss_pred CCeEEEEECCCCHHHHHHhc--CcCCeEEEEECCCCCCCccc----CHHHHHHHHHHcCCEEEEECCcccc-ccCCC--c
Confidence 34577777778999999998 44789999999999999887 7899999999999999999999421 11111 1
Q ss_pred ccCCCCcCeeeecccccCC-chhhhhheec-HHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHH
Q psy6547 96 HYEDVRPDIVILGKALSGG-LYPISAVLAD-DEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIF 173 (266)
Q Consensus 96 ~~~~~~~d~~~~sK~~~~g-~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l 173 (266)
..|.+..+.+.+|.++|. -...|+++++ +++.+.+...........+|..+......|+-+.- ..++-.+++..+
T Consensus 187 -~~GaDivv~S~tK~l~G~~d~~gG~i~~~~~~~~~~~~~~~~~~G~~~~p~~a~l~~rgl~Tl~l--R~~~~~~~a~~~ 263 (388)
T PRK08861 187 -ELGADFVIHSTTKYINGHSDVIGGVLITKTKEHAEELAWWGNCIGATGTPFDSYMTLRGIRTLGA--RMRVHEESAQQI 263 (388)
T ss_pred -ccCCCEEEeecceeccCCCcceeEEEEecHHHHHHHHHHHHhccCCCCChHHHHHHHhcCCCHHH--HHHHHHHHHHHH
Confidence 234444445588999853 0346777664 45555554322233344566665555544432211 223333344445
Q ss_pred HHHhhcc-----cccCCCcc---------cEEecCccceeeEEEEeeCccchHHHHHHHHHH--CCce--------eccC
Q psy6547 174 RSELSSP-----ANKSKASF---------KLSSGGLKKSINTLILSVSAILEVYDVCIKMKD--AGLV--------TKPI 229 (266)
Q Consensus 174 ~~~l~~~-----~~~~~~~~---------~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~--~gi~--------~~~~ 229 (266)
.+.|+.- ...+.++. ...+.|. ++.|++.. +.....+|++.|.= .+.- ..|.
T Consensus 264 a~~L~~~p~v~~V~yP~l~~~p~~~~~~~~~~g~gg---~~sf~~~~-~~~~~~~f~~~l~l~~~~~s~G~~~sl~~~p~ 339 (388)
T PRK08861 264 LAYLQTQSLVGTIYHPSLPEHPGHEIAKKQQSGFGS---MLSFEFAG-SFEQLKVFVKALALFSLAESLGGVESLICHPA 339 (388)
T ss_pred HHHHHhCCCeeEEECCCCCCCchHHHHHHhCCCCCc---eEEEEeCC-CHHHHHHHHhcCCcceEccCCCCCcceeeCCC
Confidence 5555530 11122221 1235577 89999964 12234556665542 1111 1110
Q ss_pred -----------------CCCEEEEeccCCCCHHHHHHHHHHHHHHHHHH
Q psy6547 230 -----------------SNNIIRLSPALNITEQELREGLDIIINTINTM 261 (266)
Q Consensus 230 -----------------~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~ 261 (266)
..+.||+|..+. +.+.+++.|+++++..
T Consensus 340 ~~~h~~~~~~~~~~~gi~~~liRlsvGlE----~~~dli~Dl~~al~~~ 384 (388)
T PRK08861 340 SMTHRAMGEEALAEAGVSQQLLRLSVGLE----DAQDLIADLDQAFAKA 384 (388)
T ss_pred cccccccCHHHHHhcCCCCCeEEEEeCcC----CHHHHHHHHHHHHHHH
Confidence 236899996554 4566677777777654
No 304
>PRK12566 glycine dehydrogenase; Provisional
Probab=99.48 E-value=6.3e-12 Score=117.71 Aligned_cols=235 Identities=12% Similarity=0.116 Sum_probs=144.5
Q ss_pred cCCCCCCceeecCC-----CHHHHHHHHhc-CCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCc
Q psy6547 13 FGPHMPGYNIIPYN-----DVDALEAKLKS-NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGL 86 (266)
Q Consensus 13 ~~~~~~~v~~~~~~-----d~~~l~~~l~~-~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~ 86 (266)
....+-+|+.++.+ |+++|++++++ ++++++|++..+.+.++. .+++++|++++|++|+++++|-++. .
T Consensus 608 a~~~GieVv~Vp~D~~G~iDle~L~a~I~~~~~~laaVmiT~Pnt~Gv~----e~~V~eI~~iah~~Galv~vDgA~~-~ 682 (954)
T PRK12566 608 AQMAGMRVVIVECDPDGNVDLDDLKAKAAAAGDRLSCLMITYPSTHGVY----EEGIREICEVVHQHGGQVYMDGANL-N 682 (954)
T ss_pred HHHCCCEEEEeccCCCCCcCHHHHHHHhhccCCCEEEEEEEecCcCcee----cchHHHHHHHHHHcCCEEEEEeeCh-h
Confidence 44457788888874 79999999963 347887877766554432 3579999999999999999999993 1
Q ss_pred CCcCccccccc-CCCCcCeeeec--cccc----CCchhhhhheecHHhhhccCCCC----------CC---CCCCCcHHH
Q psy6547 87 GRTGKLLAIHY-EDVRPDIVILG--KALS----GGLYPISAVLADDEVMGTLVPGT----------HG---STYGGNPLA 146 (266)
Q Consensus 87 ~~~g~~~~~~~-~~~~~d~~~~s--K~~~----~g~~~~g~~~~~~~~~~~~~~~~----------~~---~~~~~~~~~ 146 (266)
+.. .+.. -....|+++++ |+|+ +|..-+|.+.+.+.+...+.... .. ...+.+.+.
T Consensus 683 a~~----~l~~Pg~~GADi~~~s~HKtf~~P~G~GGP~vG~iav~~~L~pfLp~~P~~d~~G~~~r~ga~S~~~~gsa~~ 758 (954)
T PRK12566 683 AQV----GLARPADIGADVSHMNLHKTFCIPHGGGGPGMGPIGVRAHLAPFVANHPVVPVEGPDPNNGAVSAAPWGSASI 758 (954)
T ss_pred hcc----CCCChhhcCCCEEEecCCcccCcCccCCCCccchhhhhhhhhhhccCCCCcCCCCCCCCCCceeecccchHHH
Confidence 111 1111 23567787755 9886 22144666666664443333210 11 111233333
Q ss_pred HHHHHHHHHHHhhccHHH---HHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEe---eCccchHHHHHHHHH
Q psy6547 147 CKLAMTALDVILEENMIE---NAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILS---VSAILEVYDVCIKMK 220 (266)
Q Consensus 147 ~~a~~~~l~~~~~~~~~~---~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~~~~~~~~~~~~~l~ 220 (266)
+.++..-++.++.+ +.+ ....++.++.++|.+ .....+. ...... -+=+.+.+. ...+.+..++.++|.
T Consensus 759 l~~A~~Yi~~lG~e-Lk~aa~~ailnAnYla~rL~~-~~~v~~~--~~~~~~-~hEfii~~~~l~~~~g~~~~dvakRL~ 833 (954)
T PRK12566 759 LPISWMYIAMMGPQ-LADASEVAILSANYLANQLGG-AFPVLYR--GRNERV-AHECILDLRPLKAQTGISEEDVAKRLM 833 (954)
T ss_pred HHHHHHHHHHHCHH-HHHHHHHHHHHHHHHHHHhHh-hCCCCcC--CCCCCe-eeEEEEEccccccccCCCHHHHHHHHH
Confidence 44444445555544 322 224578888888877 2221111 110010 001223322 211356788999999
Q ss_pred HCCceecc---CCCCEEEEeccCCCCHHHHHHHHHHHHHHHHHH
Q psy6547 221 DAGLVTKP---ISNNIIRLSPALNITEQELREGLDIIINTINTM 261 (266)
Q Consensus 221 ~~gi~~~~---~~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~ 261 (266)
+.||..-. ...+++|++++...+++|||++++.++.+.++.
T Consensus 834 d~Gihapt~~fPv~~~LmIepTE~eskeEIDrf~eAL~~I~~e~ 877 (954)
T PRK12566 834 DYGFHAPTMSFPVPGTLMVEPTESESKAELDRFVEAMLSIRAEI 877 (954)
T ss_pred HCCcEEeEEeeccCCEEEEEeeeeCCHHHHHHHHHHHHHHHHHH
Confidence 99887531 237899999999999999999999999988775
No 305
>KOG1358|consensus
Probab=99.48 E-value=2.3e-12 Score=107.62 Aligned_cols=238 Identities=20% Similarity=0.199 Sum_probs=161.5
Q ss_pred ccccCCCCCCceeecCCCHHHHHHHHhcCC-------C----EEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEE
Q psy6547 10 YNEFGPHMPGYNIIPYNDVDALEAKLKSNP-------N----ICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFI 78 (266)
Q Consensus 10 ~~~~~~~~~~v~~~~~~d~~~l~~~l~~~~-------~----~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li 78 (266)
.+..+.....++.|.|||.+++|+++-+.. + .+.|++|..+.|+|.+. ++.+|.++..+|...+|
T Consensus 192 q~GlqlSRS~i~~Fkhndm~~lerll~E~~~~~~K~~k~~~~Rrfiv~EGl~~N~g~i~----pl~~iv~lk~Kyk~Rvi 267 (467)
T KOG1358|consen 192 QKGLQLSRSTISYFKHNDMEDLERLLPEQEDEDQKNPKKALTRRFIVVEGLYANTGDIC----PLPEIVKLKNKYKFRVI 267 (467)
T ss_pred HHHHhhhhheeEEecCCCHHHHHHhccCcchhhhhccccccceEEEEEEeeccCCCccc----ccHHHHHHHhhheEEEE
Confidence 355677899999999999999999884421 1 46677999999999998 99999999999999999
Q ss_pred Eecccc-C-cCCcCcccccccCCC---CcCeeeec--ccccCCchhhhhheecHHhhhccCCCCCCCCC--CCcHHHHHH
Q psy6547 79 ADEVQT-G-LGRTGKLLAIHYEDV---RPDIVILG--KALSGGLYPISAVLADDEVMGTLVPGTHGSTY--GGNPLACKL 149 (266)
Q Consensus 79 ~De~~~-~-~~~~g~~~~~~~~~~---~~d~~~~s--K~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~a 149 (266)
.||.++ | +|.+|.+ ...++++ +.|+++.| -++++| .|+.+++..+.+.-+-...+..| +..|....+
T Consensus 268 ldEs~SfG~lg~~GrG-vteH~~v~~~~iDiv~~sm~~alas~---GgFc~G~~~i~~hQrLSg~~Y~fSAslPp~la~a 343 (467)
T KOG1358|consen 268 LDESLSFGVLGKTGRG-VTEHFGVPITDIDIVTASMETALASG---GGFCAGKSFIADHQRLSGSGYCFSASLPPYLAGA 343 (467)
T ss_pred EecccccccccccCcc-ccccCCCCccceeeeeeccccccccc---CceeecceeeEeeeeccccceeeeccCchhhhhh
Confidence 999994 1 4555553 3455665 35666644 455532 45555554433322211222223 445666677
Q ss_pred HHHHHHHHhh-ccHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCcc------chHHHHHHHHHHC
Q psy6547 150 AMTALDVILE-ENMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAI------LEVYDVCIKMKDA 222 (266)
Q Consensus 150 ~~~~l~~~~~-~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~------~~~~~~~~~l~~~ 222 (266)
+..+++..+. ++..+.++.....++..|.. ... +. ..+ ..-||++.+.+...++ .--++++.++..+
T Consensus 344 a~~ai~i~~~~p~~~~~L~~k~~~~H~~l~~-~s~--~~--v~~-~~~SPi~hl~l~~~~~s~e~e~~lL~eivd~~i~~ 417 (467)
T KOG1358|consen 344 AIKAILIEEWNPEIVQPLRAKVAKFHAALSS-NSG--FI--VSG-SPESPIIHLQLERSYGSREKEEKLLEEIVDKCIAE 417 (467)
T ss_pred HHHHHHHHhhCcchhhhhhccccccchhhhc-CCc--eE--Eec-CcCCceeeeeecccccchHHHHHHHHHHHHHHHhh
Confidence 7777777655 45677777777777777776 211 11 112 2246788888876331 1245567777766
Q ss_pred CceeccC----------CCCEEEEeccCCCCHHHHHHHHHHHHHHHHHH
Q psy6547 223 GLVTKPI----------SNNIIRLSPALNITEQELREGLDIIINTINTM 261 (266)
Q Consensus 223 gi~~~~~----------~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~ 261 (266)
|+.++.. -...+|+|+...+++++++++.+.|+++....
T Consensus 418 ~~ll~~a~~~~~~e~~~~~pSiri~~~a~~seeel~ra~~~ik~~~~~~ 466 (467)
T KOG1358|consen 418 GVLLTRAKYLEKLERCPIPPSIRICVSAGMSEEELERAAELIKEVASAV 466 (467)
T ss_pred cceehhhhhhhhcccCCCCCcEEEEEeCCCCHHHHHHHHHHHHHHHHhh
Confidence 8877642 24689999999999999999999999987653
No 306
>PRK07671 cystathionine beta-lyase; Provisional
Probab=99.47 E-value=7.7e-13 Score=115.22 Aligned_cols=221 Identities=13% Similarity=0.083 Sum_probs=132.4
Q ss_pred CCCCceeecCCCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCccccc
Q psy6547 16 HMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAI 95 (266)
Q Consensus 16 ~~~~v~~~~~~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~~~ 95 (266)
++.+++.++..|++++++++ ++++++|+++.++|++|.+. ++++|.++|+++|+++|+|++|... ..+.+.
T Consensus 112 ~G~~v~~v~~~d~~~l~~ai--~~~tklV~le~P~NPtg~~~----dl~~I~~la~~~g~~lvvD~a~~~~-~~~~p~-- 182 (377)
T PRK07671 112 FGIEHTFVDTSNLEEVEEAI--RPNTKAIYVETPTNPLLKIT----DIKKISTIAKEKGLLTIVDNTFMTP-YWQSPI-- 182 (377)
T ss_pred CCeEEEEECCCCHHHHHHhc--CCCCeEEEEECCCCCCCccc----CHHHHHHHHHHcCCEEEEECCCCcc-ccCChh--
Confidence 57788888888999999999 45789999999888888876 8999999999999999999999532 112221
Q ss_pred ccCCCCcCeeeecccccCCc-hhhhhhee-cHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHH
Q psy6547 96 HYEDVRPDIVILGKALSGGL-YPISAVLA-DDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIF 173 (266)
Q Consensus 96 ~~~~~~~d~~~~sK~~~~g~-~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l 173 (266)
.++.+..+.+++|+++|.- .-.|++++ ++++.+.+...........++..+..+...++.+.. ..++..++...+
T Consensus 183 -~~g~Divv~S~sK~l~G~~~~~~G~~v~~~~~l~~~~~~~~~~~g~~~~~~~a~l~~~~l~tl~~--R~~~~~~na~~l 259 (377)
T PRK07671 183 -SLGADIVLHSATKYLGGHSDVVAGLVVVNSPELAEDLHFVQNSTGGILGPQDSWLLLRGLKTLGI--RMEEHETNSRAI 259 (377)
T ss_pred -hhCCeEEEecCcccccCCccceeEEEEeCcHHHHHHHHHHHHhhcCCCCHHHHHHHHcCcChHHH--HHHHHHHHHHHH
Confidence 2344444445889998420 12444555 556666555332222233455555544444433322 334444555566
Q ss_pred HHHhhcccc------cCCCcc---------cEEecCccceeeEEEEeeCccchHHHHHHHHH--HCCc--------eecc
Q psy6547 174 RSELSSPAN------KSKASF---------KLSSGGLKKSINTLILSVSAILEVYDVCIKMK--DAGL--------VTKP 228 (266)
Q Consensus 174 ~~~l~~~~~------~~~~~~---------~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~--~~gi--------~~~~ 228 (266)
.+.|++ .+ .+.+.. ...+.|. ++.|++.. .....+|++.|. ..+. +..|
T Consensus 260 a~~L~~-~~~v~~v~~p~l~~~~~~~~~~~~~~g~g~---~~s~~~~~--~~~~~~f~~~l~l~~~~~s~G~~~sl~~~~ 333 (377)
T PRK07671 260 AEFLNN-HPAVNKVYYPGLPSHPNHELAKEQANGFGG---MISFDVGS--EETANKVLERLQYFTLAESLGAVESLISIP 333 (377)
T ss_pred HHHHHc-CCCeeEEECCCCCCCccHHHHHhhCCCCCc---eEEEEeCC--HHHHHHHHHhCCcceEccCCCCCCeEeECC
Confidence 666654 21 112111 1234577 89999943 344556666654 2111 1111
Q ss_pred C-----------------CCCEEEEeccCCCCHHHHHHHHHHHHHHH
Q psy6547 229 I-----------------SNNIIRLSPALNITEQELREGLDIIINTI 258 (266)
Q Consensus 229 ~-----------------~~~~iR~~~~~~~t~~~i~~~~~~l~~~~ 258 (266)
. ..+.||+|..+. |.+.+++.|+.++
T Consensus 334 ~~~~~~~~~~~~~~~~gi~~~liR~svGlE----~~~dl~~dl~~al 376 (377)
T PRK07671 334 SQMTHASIPADRRKELGITDGLIRISVGIE----DGEDLIEDLAQAL 376 (377)
T ss_pred CccccccCCHHHHHhcCCCCCeEEEEeccC----CHHHHHHHHHHHh
Confidence 0 246899996654 4556666666654
No 307
>PRK08574 cystathionine gamma-synthase; Provisional
Probab=99.46 E-value=1.1e-12 Score=114.53 Aligned_cols=225 Identities=11% Similarity=0.081 Sum_probs=134.8
Q ss_pred CCCCCCceeecCCCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEecccc-CcCCcCcc
Q psy6547 14 GPHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQT-GLGRTGKL 92 (266)
Q Consensus 14 ~~~~~~v~~~~~~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~-~~~~~g~~ 92 (266)
...+.+++.+. +|++++++++++. ++++|+++.++|++|.+. ++++|.++|+++|+++|+|++|+ ++. ..+
T Consensus 113 ~~~g~~v~~~~-~d~~~l~~~i~~~-~tklV~ie~p~NPtG~v~----dl~~I~~la~~~gi~livD~t~a~~~~--~~~ 184 (385)
T PRK08574 113 EKFGVKVVLAY-PSTEDIIEAIKEG-RTKLVFIETMTNPTLKVI----DVPEVAKAAKELGAILVVDNTFATPLL--YRP 184 (385)
T ss_pred hccCcEEEEEC-CCHHHHHHhcCcc-CceEEEEECCCCCCCEec----CHHHHHHHHHHcCCEEEEECCCCcccc--CCh
Confidence 33455666554 4789999999421 689999999999999886 78999999999999999999993 221 111
Q ss_pred cccccCCCCcCeeeecccccCCchh-hhhhe-ecHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHhhccHHHHHHHHH
Q psy6547 93 LAIHYEDVRPDIVILGKALSGGLYP-ISAVL-ADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMG 170 (266)
Q Consensus 93 ~~~~~~~~~~d~~~~sK~~~~g~~~-~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~ 170 (266)
. ..|.+..+.+++|+++|..-. .|+++ .++++.+.+...........+++.+..+...++.+. ...++..+++
T Consensus 185 --l-~~GaDivv~S~sK~l~g~~d~~gG~vi~~~~~~~~~~~~~~~~~g~~~~p~~a~l~l~~l~tL~--~R~~~~~~na 259 (385)
T PRK08574 185 --L-RHGADFVVHSLTKYIAGHNDVVGGVAVAWSGEFLEELWEWRRRLGTIMQPFEAYLVLRGLKTLE--VRFERQCRNA 259 (385)
T ss_pred --h-hhCCcEEEeeCceeecCCCCceeEEEEECcHHHHHHHHHHHHhcCCCCCHHHHHHHHcccCcHH--HHHHHHHHHH
Confidence 1 235555556699999852023 35444 466766665533222334456666666655554432 2334445566
Q ss_pred HHHHHHhhcccc------cCCCccc---------E--EecCccceeeEEEEeeCccchHHHHHHHHH--HCCce------
Q psy6547 171 EIFRSELSSPAN------KSKASFK---------L--SSGGLKKSINTLILSVSAILEVYDVCIKMK--DAGLV------ 225 (266)
Q Consensus 171 ~~l~~~l~~~~~------~~~~~~~---------~--~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~--~~gi~------ 225 (266)
..+.+.|+. .+ .+.++.. . .+.|. ++.|++.. +.....+|++.|. ..+.-
T Consensus 260 ~~la~~L~~-~p~v~~V~yP~l~~~~~~~~~~~~~~~~g~g~---~~s~~l~~-~~~~~~~~~~~l~l~~~~~s~G~~~s 334 (385)
T PRK08574 260 MAIAEFLSE-HPKVAEVYYPGLPSDPYHGVAKRLFGKDLYGG---VVSFRVKG-GRDAVLKFLRSLKLIKPSPSLGGVES 334 (385)
T ss_pred HHHHHHHHc-CCCcCEEECCCCCCCchHHHHHHhCCCCCcce---EEEEEeCC-CHHHHHHHHHcCCcceEccCCCCCcc
Confidence 666666664 22 1222221 1 13566 89999964 1234556666654 21111
Q ss_pred -e-ccC-----------------CCCEEEEeccCCCCHHHHHHHHHHHHHHHHH
Q psy6547 226 -T-KPI-----------------SNNIIRLSPALNITEQELREGLDIIINTINT 260 (266)
Q Consensus 226 -~-~~~-----------------~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~ 260 (266)
+ .|. ..+.+|+|+.+. +.+.+++.|.+++++
T Consensus 335 l~~~~~~~~~~~~~~~~~~~~gi~~~liR~svGlE----~~~dli~dl~~al~~ 384 (385)
T PRK08574 335 LATYPVKSAASPIPEEDRKALGITEDLVRLSVGLE----DVEDLIEDLDQALGS 384 (385)
T ss_pred eeeCCCcCCcccCCHHHHHhcCCCCCeEEEEeccC----CHHHHHHHHHHHHhc
Confidence 1 010 136899996654 456667777776653
No 308
>TIGR01364 serC_1 phosphoserine aminotransferase. This model represents the common form of the phosphoserine aminotransferase SerC. The phosphoserine aminotransferase of the archaeon Methanosarcina barkeri and putative phosphoserine aminotransferase of Mycobacterium tuberculosis are represented by separate models. All are members of the class V aminotransferases (pfam00266).
Probab=99.46 E-value=4.4e-12 Score=109.35 Aligned_cols=201 Identities=10% Similarity=0.036 Sum_probs=140.6
Q ss_pred CCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCcccccccCCCCcCeeeecccccCCchh
Q psy6547 38 NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYP 117 (266)
Q Consensus 38 ~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~~~~~~~~~~d~~~~sK~~~~g~~~ 117 (266)
++++++|.+.++.+.+|... + ++++.+++++++|-+++ ++ +....++.++ .-+.+..|+++ . ..
T Consensus 128 ~~~~~~v~~th~ETstGv~~-~--------~l~~~~~~l~iVDavss-~g--~~~id~~~~d--~~~~ssqK~lg-P-~G 191 (349)
T TIGR01364 128 SEDAAYVHYCANETIHGVEF-R--------ELPDVKNAPLVADMSSN-IL--SRPIDVSKFG--LIYAGAQKNIG-P-AG 191 (349)
T ss_pred CCCCCEEEEcCCCCcccEec-c--------eecccCCCeEEEEcccc-cc--CccCCHHHcc--EEEEecccccC-C-Cc
Confidence 45789999999999999864 1 67777899999999995 32 2333444333 33333559997 3 44
Q ss_pred hhhheecHHhhhccCCCC-----------CCC-CCCCcHHHHHHHHHHHHHHhhc----cHHHHHHHHHHHHHHHhhccc
Q psy6547 118 ISAVLADDEVMGTLVPGT-----------HGS-TYGGNPLACKLAMTALDVILEE----NMIENAYKMGEIFRSELSSPA 181 (266)
Q Consensus 118 ~g~~~~~~~~~~~~~~~~-----------~~~-~~~~~~~~~~a~~~~l~~~~~~----~~~~~~~~~~~~l~~~l~~~~ 181 (266)
+|++..++++.+.+.+.. ... .++++.....+..++|+.+.++ ++.++.+++.+++++.|++ +
T Consensus 192 lg~l~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~Tp~~~~i~al~~al~~l~~~gG~e~i~~r~~~l~~~l~~~l~~-~ 270 (349)
T TIGR01364 192 LTVVIVRKDLLGRASRITPSMLNYKIHAENDSMYNTPPTFAIYVSGLVFKWLKEQGGVKAIEKRNQAKAQLLYDTIDN-S 270 (349)
T ss_pred eEEEEECHHHHhhcccCCCCcchHHHHHhcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHh-C
Confidence 899999999887664320 012 2366667778888899988764 3677888899999999998 6
Q ss_pred cc-CCCcccE-EecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccCC--CCEEEEeccCCCCHHHHHHHHHHHHHH
Q psy6547 182 NK-SKASFKL-SSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPIS--NNIIRLSPALNITEQELREGLDIIINT 257 (266)
Q Consensus 182 ~~-~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~--~~~iR~~~~~~~t~~~i~~~~~~l~~~ 257 (266)
+. ....... ...+. ++.|.++.. ....++.+.+.++|+.+.++. .+.+|+|+...+|++|++++++.|+++
T Consensus 271 ~gl~~~~~~~~~rs~~---v~sf~~~~~--~~~~~~~~~~~~~Gi~~~~~~~~~g~vRvS~~~~nt~edid~l~~al~~~ 345 (349)
T TIGR01364 271 NGFYRNPVDPRNRSRM---NVVFTLGNE--ELEKRFLKEAEERGLVSLKGHRSVGGMRASIYNAMPLEGVQALVDFMKEF 345 (349)
T ss_pred CCeeccCCCHHHcCCe---EEEEecCCh--hHhHHHHHHHHHCCCcccCCccccCeeEEECcCCCCHHHHHHHHHHHHHH
Confidence 42 1111101 11223 677887652 123677788899999776663 478999999999999999999999987
Q ss_pred HHH
Q psy6547 258 INT 260 (266)
Q Consensus 258 ~~~ 260 (266)
+.+
T Consensus 346 ~~~ 348 (349)
T TIGR01364 346 QKK 348 (349)
T ss_pred HHh
Confidence 654
No 309
>PRK06084 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=99.46 E-value=8.9e-13 Score=116.36 Aligned_cols=97 Identities=19% Similarity=0.209 Sum_probs=73.5
Q ss_pred CCCCceeecCCCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCccccc
Q psy6547 16 HMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAI 95 (266)
Q Consensus 16 ~~~~v~~~~~~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~~~ 95 (266)
.+.++..++.+|++++++++ .+++++|++++++|++|.+. ++++|.++|+++|+++|+|++|... ....+ .
T Consensus 121 ~gi~v~~~d~~d~e~le~ai--~~~tklV~lesp~NPtG~v~----dl~~I~~la~~~~i~vVvD~a~a~~-~~~~p--~ 191 (425)
T PRK06084 121 IGIETRFAAHDDIAALEALI--DERTKAVFCESIGNPAGNII----DIQALADAAHRHGVPLIVDNTVATP-VLCRP--F 191 (425)
T ss_pred ceeEEEEECCCCHHHHHHHh--ccCCcEEEEeCCCCCCCeec----CHHHHHHHHHHcCCEEEEECCCccc-ccCCh--h
Confidence 45677788888999999999 44689999999999999987 7999999999999999999999521 11111 1
Q ss_pred ccCCCCcCeeeecccccC-Cchhhhhhee
Q psy6547 96 HYEDVRPDIVILGKALSG-GLYPISAVLA 123 (266)
Q Consensus 96 ~~~~~~~d~~~~sK~~~~-g~~~~g~~~~ 123 (266)
.++.+..+.+++|+++| | .++|.++.
T Consensus 192 -~~gaDivv~S~tK~l~G~g-~~~gG~v~ 218 (425)
T PRK06084 192 -EHGADIVVHSLTKYIGGHG-TSIGGIVV 218 (425)
T ss_pred -hcCCCEEEECchhcccccc-cceeEEEE
Confidence 23444445568999984 4 66776555
No 310
>PRK05967 cystathionine beta-lyase; Provisional
Probab=99.46 E-value=1.7e-12 Score=113.06 Aligned_cols=227 Identities=11% Similarity=0.006 Sum_probs=133.3
Q ss_pred CCCCCCceeecCCCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCccc
Q psy6547 14 GPHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLL 93 (266)
Q Consensus 14 ~~~~~~v~~~~~~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~ 93 (266)
..++.+|..++..+.+++++++ .+++++|++|.+.|+.+.+. ++++|+++|+++|+++|+|++|... ..+
T Consensus 125 ~~~Gi~v~~vd~~~~e~l~~al--~~~TklV~lesPsNP~l~v~----dl~~I~~la~~~g~~vvVD~t~a~p----~~~ 194 (395)
T PRK05967 125 KRLGVEVEYYDPEIGAGIAKLM--RPNTKVVHTEAPGSNTFEMQ----DIPAIAEAAHRHGAIVMMDNTWATP----LYF 194 (395)
T ss_pred HhcCeEEEEeCCCCHHHHHHhc--CcCceEEEEECCCCCCCcHH----HHHHHHHHHHHhCCEEEEECCccCc----eec
Confidence 4567788888877778899999 45789999999888766554 9999999999999999999999532 111
Q ss_pred ccccCCCCcCeeeecccccC--CchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHhhccHHHHHHHHHH
Q psy6547 94 AIHYEDVRPDIVILGKALSG--GLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGE 171 (266)
Q Consensus 94 ~~~~~~~~~d~~~~sK~~~~--g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~ 171 (266)
....+|.+..+.+.+|.++| . .-.|+++.+++..+.+...........+|..+......|+-+.- ..++-.+++.
T Consensus 195 ~pl~~GaDivv~S~tKy~~Gh~d-~~~G~v~~~~~~~~~l~~~~~~~G~~~~p~da~l~~rgl~Tl~l--R~~~~~~na~ 271 (395)
T PRK05967 195 RPLDFGVDISIHAATKYPSGHSD-ILLGTVSANEKCWPQLLEAHGTLGLCAGPDDTYQILRGLRTMGI--RLEHHRKSAL 271 (395)
T ss_pred ChhHcCCCEEEEecccccCCCCC-eeEEEEEcCHHHHHHHHHHHHHcCCCCCHHHHHHHHcCcccHHH--HHHHHHHHHH
Confidence 11234666666669999985 4 44566666766555443211112223455555544444433211 1223333444
Q ss_pred HHHHHhhcc-----cccCCCccc---------EEecCccceeeEEEEeeC---ccchHHHHHHHHHHCCceecc------
Q psy6547 172 IFRSELSSP-----ANKSKASFK---------LSSGGLKKSINTLILSVS---AILEVYDVCIKMKDAGLVTKP------ 228 (266)
Q Consensus 172 ~l~~~l~~~-----~~~~~~~~~---------~~~~g~~~~~~~~~~~~~---~~~~~~~~~~~l~~~gi~~~~------ 228 (266)
.+.+.|++- ...+.++.. ..+.|. ++.|++... +...+.+|++.|.=-.+.+..
T Consensus 272 ~lA~~L~~hp~v~~V~yPgl~s~p~~~~~~~~~~g~gg---~~sf~l~~~~~~~~~~~~~f~~~l~l~~~~~slG~~~sL 348 (395)
T PRK05967 272 EIARWLEGRPDVARVLHPALPSFPGHEIWKRDFSGASG---IFSFVLAAGPEKGKAKAHAFLDALEIFGLGYSWGGYESL 348 (395)
T ss_pred HHHHHHHhCCCCcEEECCCCCCCccHHHHHHhCCCCce---EEEEEEcCCCcccHHHHHHHHHhCCcceEccCCCCccee
Confidence 444445430 111222111 124466 899999741 123355566655421111110
Q ss_pred ---------------CCCCEEEEeccCCCCHHHHHHHHHHHHHHHHH
Q psy6547 229 ---------------ISNNIIRLSPALNITEQELREGLDIIINTINT 260 (266)
Q Consensus 229 ---------------~~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~ 260 (266)
..++.+|+|..+. +.+.+++.|+++++.
T Consensus 349 i~~~~~~~~~~~~~~~~~~liRlSvGlE----d~~dLi~Dl~~Al~~ 391 (395)
T PRK05967 349 ALHVKLGDRTVAKAPYAGPVIRLQIGLE----DVPDLKADLERGFAA 391 (395)
T ss_pred eeeCCCChhHhhhccCCCCeEEEEeccC----CHHHHHHHHHHHHHh
Confidence 1235799996655 456667777776654
No 311
>PRK05939 hypothetical protein; Provisional
Probab=99.46 E-value=1.1e-12 Score=114.84 Aligned_cols=99 Identities=23% Similarity=0.315 Sum_probs=77.3
Q ss_pred CCCCCceeecCCCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCcccc
Q psy6547 15 PHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLA 94 (266)
Q Consensus 15 ~~~~~v~~~~~~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~~ 94 (266)
-++.+++.++..|++++++++ .+++++|+++.++|++|.+. ++++|.++|+++|+++|+|++|... ..+.
T Consensus 108 ~~G~~v~~v~~~d~e~l~~~l--~~~tklV~vesp~NptG~v~----dl~~I~~la~~~gi~livD~t~a~~----~~~~ 177 (397)
T PRK05939 108 GLGVEVTMVDATDVQNVAAAI--RPNTRMVFVETIANPGTQVA----DLAGIGALCRERGLLYVVDNTMTSP----WLFR 177 (397)
T ss_pred hcCCEEEEECCCCHHHHHHhC--CCCCeEEEEECCCCCCCCHH----hHHHHHHHHHHcCCEEEEECCcccc----cccC
Confidence 457788999988999999999 45789999999999999886 9999999999999999999998421 1111
Q ss_pred cccCCCCcCeeeecccccC-Cchhhhhheec
Q psy6547 95 IHYEDVRPDIVILGKALSG-GLYPISAVLAD 124 (266)
Q Consensus 95 ~~~~~~~~d~~~~sK~~~~-g~~~~g~~~~~ 124 (266)
....|.+..+.+++|.++| | ..+|+++..
T Consensus 178 ~~~~gaDivv~S~sK~~~g~g-~~igg~v~~ 207 (397)
T PRK05939 178 PKDVGASLVINSLSKYIAGHG-NALGGAVTD 207 (397)
T ss_pred ccccCCEEEEecCeecccCCC-CeEEEEEec
Confidence 1123455555669999995 5 778877664
No 312
>PRK06176 cystathionine gamma-synthase/cystathionine beta-lyase; Validated
Probab=99.45 E-value=5.6e-13 Score=116.16 Aligned_cols=226 Identities=13% Similarity=0.074 Sum_probs=126.4
Q ss_pred CCCCCceeecCCCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCcccc
Q psy6547 15 PHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLA 94 (266)
Q Consensus 15 ~~~~~v~~~~~~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~~ 94 (266)
..+.+++.++..|++++++.+ .+++++|+++.++|++|.+. ++++|.++|+++|+++|+|++|+.. ..+.+
T Consensus 111 ~~gi~v~~vd~~d~e~l~~ai--~~~t~lV~lesP~Nptg~~~----di~~I~~la~~~gi~vivD~t~a~~-~~~~p-- 181 (380)
T PRK06176 111 KNGLSCTIIDTSDLSQIKKAI--KPNTKALYLETPSNPLLKIT----DLAQCASVAKDHGLLTIVDNTFATP-YYQNP-- 181 (380)
T ss_pred hcCeEEEEcCCCCHHHHHHhc--CcCceEEEEECCCCCCceec----CHHHHHHHHHHcCCEEEEECCcccc-ccCCc--
Confidence 356677888888999999999 45789999999899899886 7999999999999999999999532 11222
Q ss_pred cccCCCCcCeeeecccccCCc-hhhhhheec-HHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHH--hhccHHHHHHHHH
Q psy6547 95 IHYEDVRPDIVILGKALSGGL-YPISAVLAD-DEVMGTLVPGTHGSTYGGNPLACKLAMTALDVI--LEENMIENAYKMG 170 (266)
Q Consensus 95 ~~~~~~~~d~~~~sK~~~~g~-~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~--~~~~~~~~~~~~~ 170 (266)
. .++.+..+.+++|.++|.. .-.|+++.+ +++.+.+...........++.........++-+ +.+...++..++.
T Consensus 182 ~-~~gaDivv~S~tK~l~g~~d~~gG~vv~~~~~~~~~~~~~~~~~G~~~~~~~~~l~~~gl~tl~~R~~~~~~~a~~la 260 (380)
T PRK06176 182 L-LLGADIVVHSGTKYLGGHSDVVAGLVTTNNEALAQEIAFFQNAIGGVLGPQDSWLLQRGIKTLGLRMEAHQKNALCVA 260 (380)
T ss_pred c-ccCCCEEEecCceeccCCccceeeEEEecHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccCcHHHHHHHHHHHHHHHH
Confidence 1 2344444444779998530 124556664 455454442211111222333333333223211 1122333333333
Q ss_pred HHHHHH--hhcccccCCCcc---------cEEecCccceeeEEEEeeCccchHHHHHHHHHHCCcee----------ccC
Q psy6547 171 EIFRSE--LSSPANKSKASF---------KLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVT----------KPI 229 (266)
Q Consensus 171 ~~l~~~--l~~~~~~~~~~~---------~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~----------~~~ 229 (266)
+.+.++ +.. ...+.+.. ...+.|. ++.|++.. .....+|++.|.=-.+.+ .|.
T Consensus 261 ~~L~~~p~v~~-v~~p~l~~~~~~~~~~~~~~g~g~---~~s~~~~~--~~~~~~f~~~l~~~~~~~s~G~~~sl~~~p~ 334 (380)
T PRK06176 261 EFLEKHPKVEK-VYYPGLPTHPNHELAKKQMRGFSG---MLSFTLKN--DSEAVAFVESLKLFILGESLGGVESLVGIPA 334 (380)
T ss_pred HHHHhCCCeeE-EECCCCCCCccHHHHHhhCCCCce---EEEEEECC--HHHHHHHHHcCCcceEccCCCCCCceeeCCc
Confidence 333322 111 11122111 1224566 89999975 334556666554211111 111
Q ss_pred -----------------CCCEEEEeccCCCCHHHHHHHHHHHHHHHHH
Q psy6547 230 -----------------SNNIIRLSPALNITEQELREGLDIIINTINT 260 (266)
Q Consensus 230 -----------------~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~ 260 (266)
..+.||+|..+. +.+.+++.|++++++
T Consensus 335 ~~~~~~~~~~~~~~~gi~~~liR~svGlE----~~~dli~dl~~Al~~ 378 (380)
T PRK06176 335 FMTHACIPKEQREAAGIRDGLVRLSVGIE----HEQDLLEDLEQAFAK 378 (380)
T ss_pred ccccccCCHHHHHhcCCCcCeEEEEeccC----CHHHHHHHHHHHHhh
Confidence 246899995544 566677777777754
No 313
>COG3844 Kynureninase [Amino acid transport and metabolism]
Probab=99.44 E-value=2e-11 Score=99.95 Aligned_cols=220 Identities=15% Similarity=0.172 Sum_probs=163.0
Q ss_pred CHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCc-ccccccCCCCcCee
Q psy6547 27 DVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGK-LLAIHYEDVRPDIV 105 (266)
Q Consensus 27 d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~-~~~~~~~~~~~d~~ 105 (266)
+++++++.+ +.++++++++.++.-+|.+. ++.+|-.++|++|++++.|=+|+. |. +..+...|.+.-+.
T Consensus 155 ~P~~~~~~~--~dd~AvV~L~~V~y~TGql~----dm~aiT~~AH~~galv~wDLAHsa----Gavp~~Lh~~gaDfaig 224 (407)
T COG3844 155 APRALEEAI--TDDVAVVLLSHVNYKTGQLL----DMRAITALAHQHGALVGWDLAHSA----GAVPVDLHAAGADFAIG 224 (407)
T ss_pred ChHHHHHhh--ccceEEEEecccccccccee----eHHHHHHHHHhcCceEEeehhccc----CCcceeecccCCCeeee
Confidence 577889888 66899999999999999998 999999999999999999999952 22 22345567777788
Q ss_pred eecccccCCchhhhhheecHHhhhccCCC-----------------------CCCCCCCCcHHHHHHHHHHHHHHhh---
Q psy6547 106 ILGKALSGGLYPISAVLADDEVMGTLVPG-----------------------THGSTYGGNPLACKLAMTALDVILE--- 159 (266)
Q Consensus 106 ~~sK~~~~g~~~~g~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~a~~~~l~~~~~--- 159 (266)
+.-|.++||-=..+++...++..+...+. ..+..-+++.+++++...+|++...
T Consensus 225 csyKYLNgGPGapa~l~v~~~h~e~~~~~lsgW~gha~pf~m~~~y~p~~ga~rf~~gt~~V~s~aal~~aLDifa~~~i 304 (407)
T COG3844 225 CSYKYLNGGPGAPAGLFVAPRHRERSWPPLSGWWGHARPFAMEEVYAPGPGARRFLCGTQPVLSLAALEGALDIFADVDI 304 (407)
T ss_pred eeceeccCCCCCceeEEeccccccccccccccccCCCCcchhhhccCcCccccceeeCCcchhhhHHHhhhhhhhhhcCH
Confidence 88899995522234555555443332110 0111224566678888889988765
Q ss_pred ccHHHHHHHHHHHHHHHhhcccccCCCc----ccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccCCCCEEE
Q psy6547 160 ENMIENAYKMGEIFRSELSSPANKSKAS----FKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPISNNIIR 235 (266)
Q Consensus 160 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~----~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~iR 235 (266)
.+++++...+++++.+.++.......+. ..-...|. .+++..+. +..+++.|.++||+.-...++.+|
T Consensus 305 ~~lR~kSlaLTd~fieLvEa~~~~~~l~l~tPr~~~~rGs---qvS~~hp~-----~~~V~qaLi~rGVigD~R~P~vlR 376 (407)
T COG3844 305 TELRKKSLALTDYFIELVEARCEYYGLTLVTPRAHEERGS---QVSLYHPH-----GYQVMQALIDRGVIGDFREPDVLR 376 (407)
T ss_pred HHHHHhhhHHHHHHHHHHHhccccCCcEEeccchhhhccc---eeeEecCc-----HHHHHHHHHHcCccccccCCCeee
Confidence 4588888889999999888733321111 10123466 78888776 789999999999999888899999
Q ss_pred Eec-cCCCCHHHHHHHHHHHHHHHHHHhhc
Q psy6547 236 LSP-ALNITEQELREGLDIIINTINTMAAK 264 (266)
Q Consensus 236 ~~~-~~~~t~~~i~~~~~~l~~~~~~~~~~ 264 (266)
+.+ +++++-.|+-.+++.|.+++++...|
T Consensus 377 fgftPlY~~~~DVw~AV~~L~evL~t~a~~ 406 (407)
T COG3844 377 FGFTPLYVSFVDVWDAVDALEEVLDTLAWQ 406 (407)
T ss_pred ecCccceechhHHHHHHHHHHHHHHhhccC
Confidence 987 57889999999999999999987655
No 314
>cd00611 PSAT_like Phosphoserine aminotransferase (PSAT) family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major group in this CD corresponds to phosphoserine aminotransferase (PSAT). PSAT is active as a dimer and catalyzes the conversion of phosphohydroxypyruvate to phosphoserine.
Probab=99.44 E-value=6.4e-12 Score=108.84 Aligned_cols=198 Identities=12% Similarity=0.034 Sum_probs=135.9
Q ss_pred CCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCcccccccCCCCcCeeeecccccCCchh
Q psy6547 38 NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYP 117 (266)
Q Consensus 38 ~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~~~~~~~~~~d~~~~sK~~~~g~~~ 117 (266)
++++++|.+.++.+.+|... .++++.||+++++|-+++ ++ +.+..++.++ .++.+..|++| . ..
T Consensus 136 ~~~~~lV~~~h~~t~tG~~~---------~~i~~~~g~~~~VDa~qs-~g--~~~idv~~~~--~~~ss~~K~lG-P-~G 199 (355)
T cd00611 136 APDAAYVHYCSNETIHGVEF---------DEVPDTGGVPLVADMSSN-IL--SRPIDVSKFG--VIYAGAQKNLG-P-AG 199 (355)
T ss_pred CCCCCEEEEeCCcccccEEc---------ceecccCCCeEEEEcccc-cc--CCCCCHHHhC--EEEeecccccC-C-Cc
Confidence 45789999999998888862 145556999999999995 22 2233444444 34444679886 3 45
Q ss_pred hhhheecHHhhhccCCCC-----------CC-CCCCCcHHHHHHHHHHHHHHhhc----cHHHHHHHHHHHHHHHhhccc
Q psy6547 118 ISAVLADDEVMGTLVPGT-----------HG-STYGGNPLACKLAMTALDVILEE----NMIENAYKMGEIFRSELSSPA 181 (266)
Q Consensus 118 ~g~~~~~~~~~~~~~~~~-----------~~-~~~~~~~~~~~a~~~~l~~~~~~----~~~~~~~~~~~~l~~~l~~~~ 181 (266)
+|+++.++++.+.+.+.. .. ...+++.....+..++++++..+ .+.++.+++.+++++.|++ +
T Consensus 200 ~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Tpn~~~i~~L~aal~~l~~~gg~e~i~~~~~~l~~~l~~~l~~-~ 278 (355)
T cd00611 200 VTVVIVRKDLLGKARKITPSMLNYKTHADNNSLYNTPPTFAIYMMGLVLKWLKEQGGVEAMEKRNRQKAQLLYDTIDN-S 278 (355)
T ss_pred eEEEEECHHHHhhcccCCCCcccHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHh-C
Confidence 899999998887655421 01 13466666788888899988664 4678888899999999998 6
Q ss_pred ccC--CCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccCC--CCEEEEeccCCCCHHHHHHHHHHHHHH
Q psy6547 182 NKS--KASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPIS--NNIIRLSPALNITEQELREGLDIIINT 257 (266)
Q Consensus 182 ~~~--~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~--~~~iR~~~~~~~t~~~i~~~~~~l~~~ 257 (266)
..- .........+. ++.|.++.. ....++.+.+.++|+...++. .+.+|+|++..+|++|++++++.|+++
T Consensus 279 ~gl~~~~~~~~~rs~~---vvsf~~~~~--~l~~~~~~~~~r~G~~~~~~~~~~g~vR~S~~~~nt~edi~~l~~al~~~ 353 (355)
T cd00611 279 NGFYRGPVDKRARSRM---NVPFRLGKE--ELEKEFLKEAEAAGMIGLKGHRSVGGIRASIYNALSLEGVQALADFMKEF 353 (355)
T ss_pred ccccccCCCHHHcCce---EEEEEcCCh--hhhHHHHHHHHHCCCcccCCCcccCeEEEEccCCCCHHHHHHHHHHHHHH
Confidence 321 11110011223 577876651 122556677888999855553 478999999999999999999999885
No 315
>TIGR01326 OAH_OAS_sulfhy OAH/OAS sulfhydrylase. This model describes a distinct clade of the Cys/Met metabolism pyridoxal phosphate-dependent enzyme superfamily. Members include examples of OAH/OAS sulfhydrylase, an enzyme with activity both as O-acetylhomoserine (OAH) sulfhydrylase (EC 2.5.1.49) and O-acetylserine (OAS) sulphydrylase (EC 2.5.1.47). An alternate name for OAH sulfhydrylase is homocysteine synthase. This model is designated subfamily because it may or may not have both activities.
Probab=99.44 E-value=8.5e-13 Score=116.56 Aligned_cols=100 Identities=18% Similarity=0.163 Sum_probs=77.2
Q ss_pred CCCCCceeecCCCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCcccc
Q psy6547 15 PHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLA 94 (266)
Q Consensus 15 ~~~~~v~~~~~~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~~ 94 (266)
.++.+++.++.+|++++++++ .+++++|++++++|++|.+. ++++|+++|+++|+++|+|++|... .....
T Consensus 119 ~~G~~v~~v~~~d~~~l~~~l--~~~t~~V~le~p~NPtg~v~----dl~~I~~la~~~~i~livD~t~~~~-~~~~~-- 189 (418)
T TIGR01326 119 RLGIEVRFVDPDDPEEFEKAI--DENTKAVFAETIGNPAINVP----DIEAIAEVAHAHGVPLIVDNTFATP-YLCRP-- 189 (418)
T ss_pred HcCcEEEEECCCCHHHHHHhc--CcCCeEEEEECCCCCCCeec----CHHHHHHHHHHcCCEEEEECCCchh-hcCCc--
Confidence 467788999988999999999 44689999999999888886 7999999999999999999999421 11111
Q ss_pred cccCCCCcCeeeecccccC-CchhhhhheecH
Q psy6547 95 IHYEDVRPDIVILGKALSG-GLYPISAVLADD 125 (266)
Q Consensus 95 ~~~~~~~~d~~~~sK~~~~-g~~~~g~~~~~~ 125 (266)
. ..+.+..+.+++|++++ | +++|+++.+.
T Consensus 190 l-~~g~Divv~S~sK~l~g~G-~~lGg~v~~~ 219 (418)
T TIGR01326 190 I-DHGADIVVHSATKYIGGHG-TAIGGVIVDG 219 (418)
T ss_pred h-hcCCeEEEECccccccCCc-cceEEEEEec
Confidence 1 12333334459999995 7 8999988754
No 316
>TIGR03588 PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase. This family of enzymes are aminotransferases of the pfam01041 family involved in the biosynthesis of pseudaminic acid. They convert UDP-4-keto-6-deoxy-N-acetylglucosamine into UDP-4-amino-4,6-dideoxy-N-acetylgalactose. Pseudaminic acid has a role in surface polysaccharide in Pseudomonas as well as in the modification of flagellin in Campylobacter and Helicobacter species.
Probab=99.43 E-value=1e-11 Score=108.66 Aligned_cols=226 Identities=15% Similarity=0.106 Sum_probs=138.0
Q ss_pred CCCCceeecC------CCHHHHHHHHhcC--CCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcC
Q psy6547 16 HMPGYNIIPY------NDVDALEAKLKSN--PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLG 87 (266)
Q Consensus 16 ~~~~v~~~~~------~d~~~l~~~l~~~--~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~ 87 (266)
.+.+++.++. .|++++++.+++. +++++|++.. ..|... ++++|.++|++||++||+|++|+...
T Consensus 89 ~G~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~t~~v~~~~---~~G~~~----~~~~i~~l~~~~~~~lI~D~a~a~g~ 161 (380)
T TIGR03588 89 CGAKVDFVDIDPDTGNIDEDALEKKLAAAKGKLPKAIVPVD---FAGKSV----DMQAIAALAKKHGLKIIEDASHALGA 161 (380)
T ss_pred cCCEEEEEecCCCcCCcCHHHHHHHhhcccCCCceEEEEeC---CCCccC----CHHHHHHHHHHcCCEEEEECCCcccC
Confidence 3556666653 3789999999532 4678877543 245554 79999999999999999999995211
Q ss_pred CcCcccccccCCC--CcCeeeec----ccccCCchhhhhhee-cHHhhhccCCC-------------------------C
Q psy6547 88 RTGKLLAIHYEDV--RPDIVILG----KALSGGLYPISAVLA-DDEVMGTLVPG-------------------------T 135 (266)
Q Consensus 88 ~~g~~~~~~~~~~--~~d~~~~s----K~~~~g~~~~g~~~~-~~~~~~~~~~~-------------------------~ 135 (266)
. +.-...|. ..|+.++| |.++.| ..|+++. ++++.+.++.. .
T Consensus 162 ~----~~~~~~g~~~~~d~~~~S~~~~K~~~~~--~GG~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 235 (380)
T TIGR03588 162 E----YGGKPVGNCRYADATVFSFHPVKIITTA--EGGAVTTNDEELAERMRLLRSHGITKDPLLFEKQDEGPWYYEQQE 235 (380)
T ss_pred c----cCCEeCCCccccceEEEecCCCCccccc--CceEEEECCHHHHHHHHHHHHCCCCCCcccccccccCcceeeeec
Confidence 1 11112233 34666655 888755 3555554 45555443210 0
Q ss_pred CCCCCCCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccce-eeEEEEeeCccchHHH
Q psy6547 136 HGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKS-INTLILSVSAILEVYD 214 (266)
Q Consensus 136 ~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~ 214 (266)
.+..+..+.+.++.+...|+.+ +...++.+++.+++.+.|.. ++.........+... ++ ++.+.+....+.+.++
T Consensus 236 ~g~n~~m~~l~aa~g~~qL~~l--~~~~~~r~~~~~~~~~~L~~-~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~r~~ 311 (380)
T TIGR03588 236 LGFNYRMTDIQAALGLSQLKKL--DRFVAKRREIAARYDRLLKD-LPYFTPLTIPLGSKS-AWHLYPILLDQEFGCTRKE 311 (380)
T ss_pred cccccCccHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhcC-CCCccCCCCCCCCEe-EEEEEEEEECCcCCCCHHH
Confidence 1112334555555555555543 45677888889999999988 543111110101000 01 2333333212356889
Q ss_pred HHHHHHHCCceeccC-------------------------CCCEEEEeccCCCCHHHHHHHHHHHHHHH
Q psy6547 215 VCIKMKDAGLVTKPI-------------------------SNNIIRLSPALNITEQELREGLDIIINTI 258 (266)
Q Consensus 215 ~~~~l~~~gi~~~~~-------------------------~~~~iR~~~~~~~t~~~i~~~~~~l~~~~ 258 (266)
+.+.|.++||.++.. ....+++.++...|++|++..++.|++++
T Consensus 312 l~~~L~~~gI~~~~~~~~~~~~~~~~~~~~~~~~p~a~~~~~~~l~lP~~~~l~~~dv~~i~~~l~~~~ 380 (380)
T TIGR03588 312 VFEALRAAGIGVQVHYIPVHLQPYYRQGFGDGDLPSAENFYLAEISLPLHPALTLEQQQRVVETLRKVL 380 (380)
T ss_pred HHHHHHHCCCCcccCCcccccChhhhccCCcCCCcHHHHHHhceEEcCCCCCCCHHHHHHHHHHHHHhC
Confidence 999999999987521 01568888888899999999999998763
No 317
>PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B ....
Probab=99.42 E-value=3.1e-12 Score=111.03 Aligned_cols=223 Identities=18% Similarity=0.135 Sum_probs=129.9
Q ss_pred cCCCCCCceeecCCCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcC-CEEEEeccccCcCCcCc
Q psy6547 13 FGPHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYN-VLFIADEVQTGLGRTGK 91 (266)
Q Consensus 13 ~~~~~~~v~~~~~~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g-~~li~De~~~~~~~~g~ 91 (266)
+..++.++.+++..|++++++++ .+++++|++|++.|+...+. ++++|+++|+++| +++|+|+++...
T Consensus 115 l~~~gv~v~~~d~~d~~~l~~~l--~~~t~~v~~EspsNP~l~v~----Dl~~i~~~a~~~g~~~~vVDnT~atp----- 183 (386)
T PF01053_consen 115 LPRFGVEVTFVDPTDLEALEAAL--RPNTKLVFLESPSNPTLEVP----DLEAIAKLAKEHGDILVVVDNTFATP----- 183 (386)
T ss_dssp HHHTTSEEEEESTTSHHHHHHHH--CTTEEEEEEESSBTTTTB-------HHHHHHHHHHTTT-EEEEECTTTHT-----
T ss_pred hcccCcEEEEeCchhHHHHHhhc--cccceEEEEEcCCCcccccc----cHHHHHHHHHHhCCceEEeeccccce-----
Confidence 44568889999999999999999 55899999999999887777 9999999999999 999999999421
Q ss_pred ccccc--cCCCCcCeeeecccccCCc-hhhhhheec--HHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHhhccHHHHH
Q psy6547 92 LLAIH--YEDVRPDIVILGKALSGGL-YPISAVLAD--DEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENA 166 (266)
Q Consensus 92 ~~~~~--~~~~~~d~~~~sK~~~~g~-~~~g~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~ 166 (266)
+.+. .+|.+..+.+.+|.++|.- .-.|.++.+ +++.+.++......-...+|..+......|+-+ .-..++.
T Consensus 184 -~~~~pL~~GaDivv~S~TKyl~Ghsdv~~G~vv~~~~~~~~~~l~~~~~~~G~~~~p~da~ll~rgl~Tl--~~R~~~~ 260 (386)
T PF01053_consen 184 -YNQNPLELGADIVVHSATKYLSGHSDVMGGAVVVNGSSELYDRLREFRRLLGATLSPFDAWLLLRGLRTL--PLRMERQ 260 (386)
T ss_dssp -TTC-GGGGT-SEEEEETTTTTTTSSSE-EEEEEESSHHHHHHHHHHHHHHHT-B--HHHHHHHHHHHTTH--HHHHHHH
T ss_pred -eeeccCcCCceEEEeeccccccCCcceeeEEEEECchhhhhhhhcchhhhcCccchHHHHHHHhcCCCcH--HHHHHHH
Confidence 1112 2355555566889998420 224556654 355555442211111223444444444333322 2234444
Q ss_pred HHHHHHHHHHhhcccc------cCCCcc---------cEEecCccceeeEEEEeeCccc-hHHHHHHHHHHC--Cc----
Q psy6547 167 YKMGEIFRSELSSPAN------KSKASF---------KLSSGGLKKSINTLILSVSAIL-EVYDVCIKMKDA--GL---- 224 (266)
Q Consensus 167 ~~~~~~l~~~l~~~~~------~~~~~~---------~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~l~~~--gi---- 224 (266)
.+++..+.+.|++ -+ .+.++. ...+.|. ++.|++.. +. ....|.+.|.=- +.
T Consensus 261 ~~nA~~lA~~L~~-hp~V~~V~yPgl~s~p~~~~~~~~~~g~gg---l~sf~l~~--~~~~~~~f~~~l~l~~~~~SlGg 334 (386)
T PF01053_consen 261 NENAEALAEFLEE-HPKVKRVYYPGLPSHPQHELAKRQMSGGGG---LLSFELKG--GEEAARRFLDALKLFSIAPSLGG 334 (386)
T ss_dssp HHHHHHHHHHHHT-STTEEEEEETTSTTSTTHHHHHHHCSSCTS---EEEEEESS--HHHHHHHHHHH-SSSEESSS-SS
T ss_pred HHHHHHHHHHHHh-CCCCCeEEEcccccccceeeeeecccccCc---eeEEEecc--chhhhHhHHhhhhhHhhhhhcCC
Confidence 5566666666665 21 122211 1225566 99999988 43 456677766421 11
Q ss_pred ----eeccC-----------------CCCEEEEeccCCCCHHHHHHHHHHHHHHHH
Q psy6547 225 ----VTKPI-----------------SNNIIRLSPALNITEQELREGLDIIINTIN 259 (266)
Q Consensus 225 ----~~~~~-----------------~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~ 259 (266)
+..|. ..+.+|+|..+ ||.+.+++.|+++++
T Consensus 335 ~~SLi~~p~~~~h~~~~~e~~~~~Gi~~~liRlSvGl----Ed~~dLi~Dl~~AL~ 386 (386)
T PF01053_consen 335 VESLISHPASTSHRSLSPEERAEAGISDGLIRLSVGL----EDPDDLIADLEQALE 386 (386)
T ss_dssp SS-EEEETTCTTTTTSCHHHHHHTTS-TTEEEEE--S----S-HHHHHHHHHHHHH
T ss_pred cccccccccchhhccCChhhhhccCCCCCeeEEEecc----CCHHHHHHHHHHhcC
Confidence 11111 23789999554 456777777777764
No 318
>PLN02724 Molybdenum cofactor sulfurase
Probab=99.40 E-value=6.7e-11 Score=112.34 Aligned_cols=209 Identities=14% Similarity=0.112 Sum_probs=137.9
Q ss_pred CCEEEEEEccccCCCCcccCChHHHHHHHHHHHh---c-----CCEEEEeccccCcCCcCcccccccCCCCcCeee--ec
Q psy6547 39 PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQ---Y-----NVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVI--LG 108 (266)
Q Consensus 39 ~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~---~-----g~~li~De~~~~~~~~g~~~~~~~~~~~~d~~~--~s 108 (266)
+++++|.+....|.+|.+. +++.+..+++. + ++++++|.+|+ .+. ....+. ...+|+++ ..
T Consensus 191 ~~t~LVa~~~vsN~tG~i~----pi~~i~~~~~~~~~~~~~~g~~~v~vDaaQ~-~g~--~piDv~--~~~~Dfl~~S~H 261 (805)
T PLN02724 191 EAYNLFAFPSECNFSGAKF----PLDLVKLIKDNQHSNFSKSGRWMVLLDAAKG-CGT--SPPDLS--RYPADFVVVSFY 261 (805)
T ss_pred CCcceEEEEccccCCCCcC----CHHHHHHHHHhcccccccCcceEEEeehhhh-cCC--CCCChh--hcCCCEEEEecc
Confidence 3568999999999999986 55555444432 2 36899999994 221 122333 34566666 55
Q ss_pred ccccCCchhhhhheecHHhhhccCCCCCCC------------------------CCCCcHHHHHHHHHHHHHHhh---cc
Q psy6547 109 KALSGGLYPISAVLADDEVMGTLVPGTHGS------------------------TYGGNPLACKLAMTALDVILE---EN 161 (266)
Q Consensus 109 K~~~~g~~~~g~~~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~a~~~~l~~~~~---~~ 161 (266)
|++++. ..+|+++.++++.+.+.+...+. .-+.+..+.+++.++++.+.. +.
T Consensus 262 K~~GgP-~G~G~L~vr~~~~~~l~p~~~GGg~~~~~~~~~~~~~~~~~~~~rfE~GT~n~~~i~~l~aal~~l~~ig~~~ 340 (805)
T PLN02724 262 KIFGYP-TGLGALLVRRDAAKLLKKKYFGGGTVAASIADIDFVKRRERVEQRFEDGTISFLSIAALRHGFKLLNRLTISA 340 (805)
T ss_pred eeccCC-CCceEEEEehhhhhhhcCCccCCCceEEEecccceeeccccHHHHhcCCCcchhHHHHHHHHHHHHHHhChHH
Confidence 999855 56899999888776665421111 114566677777788887765 56
Q ss_pred HHHHHHHHHHHHHHHhhccccc-CCCcc-cEEec-------CccceeeEEEEeeCcc--chHHHHHHHHHHCCceeccC-
Q psy6547 162 MIENAYKMGEIFRSELSSPANK-SKASF-KLSSG-------GLKKSINTLILSVSAI--LEVYDVCIKMKDAGLVTKPI- 229 (266)
Q Consensus 162 ~~~~~~~~~~~l~~~l~~~~~~-~~~~~-~~~~~-------g~~~~~~~~~~~~~~~--~~~~~~~~~l~~~gi~~~~~- 229 (266)
+.++..++.+++.+.|++ +.. ++.+. ...+. ..-.|++.|.+...++ ....++...+.++||.++.+
T Consensus 341 I~~~~~~L~~~l~~~L~~-l~~~~g~~~v~iyg~~~~~~~~~~r~~ivsFnv~~~~~~~v~~~~v~~l~~~~gI~vR~G~ 419 (805)
T PLN02724 341 IAMHTWALTHYVANSLRN-LKHGNGAPVCVLYGNHTFKLEFHIQGPIVTFNLKRADGSWVGHREVEKLASLSGIQLRTGC 419 (805)
T ss_pred HHHHHHHHHHHHHHHHHh-ccCCCCCeEEEEcCCCCCCCCcccccCEEEEEEEcCCCCEeCHHHHHHHHHhcCcEEeecc
Confidence 788999999999999998 542 11110 01010 0123589888876432 23444555556779998743
Q ss_pred --------------------------------------CCCEEEEeccCCCCHHHHHHHHHHHHHHH
Q psy6547 230 --------------------------------------SNNIIRLSPALNITEQELREGLDIIINTI 258 (266)
Q Consensus 230 --------------------------------------~~~~iR~~~~~~~t~~~i~~~~~~l~~~~ 258 (266)
..+++|+|+++++|.+|++++++.|++..
T Consensus 420 ~Ca~~~~~~~lg~~~~~l~~~~~~~~~c~~~~~~~~~~~~G~vRvS~g~ynt~eDvd~lv~~l~~~~ 486 (805)
T PLN02724 420 FCNPGACAKYLGLSHKDLQANFEAGHVCWDDQDVIHGRPTGAVRVSFGYMSTFEDCQKFIDFIISSF 486 (805)
T ss_pred ccCchHHHHHcCCCHHHHHHHhhcCCccCchhheecCcccceEEEEcCccCCHHHHHHHHHHHHHHh
Confidence 01779999999999999999999999965
No 319
>TIGR00461 gcvP glycine dehydrogenase (decarboxylating). This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment.
Probab=99.40 E-value=6.6e-11 Score=111.47 Aligned_cols=244 Identities=14% Similarity=0.097 Sum_probs=157.7
Q ss_pred cCCcCcccccCCCCCCceeecCC-----CHHHHHHHHhcC-CCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEE
Q psy6547 4 TTDPTSYNEFGPHMPGYNIIPYN-----DVDALEAKLKSN-PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLF 77 (266)
Q Consensus 4 ~~~~~~~~~~~~~~~~v~~~~~~-----d~~~l~~~l~~~-~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~l 77 (266)
++..++.......+-+|+.++.+ |+++|+++++++ +++++|+++.+.+ .|.+. +++++|+++||++|..+
T Consensus 586 saHgtnPasa~~~G~~Vv~V~~d~~G~iDle~L~~~i~~~~~~taaV~iT~pst-~G~~e---~~I~eI~~iah~~G~~v 661 (939)
T TIGR00461 586 SAHGTNPASAAMAGMQVVPVNCDQDGNIDLVDLKNKAEQHGDELAAVMVTYPST-HGVFE---PTIQHACDIVHSFGGQV 661 (939)
T ss_pred cccCcCHHHHHHCCCEEEEeccCCCCCcCHHHHHHHHhhcCCceEEEEEEeCCc-Cceec---ccHHHHHHHHHHcCCEE
Confidence 33433334455567788898874 799999999652 4789998887666 46553 24999999999999999
Q ss_pred EEeccccC-cCCcCcccccccCCCCcCeeeec--cccc-----CCchhhhhheecHHhhhccCCCCC-------------
Q psy6547 78 IADEVQTG-LGRTGKLLAIHYEDVRPDIVILG--KALS-----GGLYPISAVLADDEVMGTLVPGTH------------- 136 (266)
Q Consensus 78 i~De~~~~-~~~~g~~~~~~~~~~~~d~~~~s--K~~~-----~g~~~~g~~~~~~~~~~~~~~~~~------------- 136 (266)
++|-++.. .. +. ...-....|+++++ |+|+ || ..+|++.+++++...+.....
T Consensus 662 ~VDgAq~~al~--~l---~~Pg~~GaDi~~~s~HKtf~~P~G~GG-Pg~G~i~vr~~L~~~lPg~~v~~t~d~~greq~I 735 (939)
T TIGR00461 662 YLDGANMNAQV--GL---TSPGDLGADVCHLNLHKTFCIPHGGGG-PGMGPIGVKSHLIPFLPKHDVVSMITGIGGSKSI 735 (939)
T ss_pred EEEecChhhCC--CC---CCccccCCCEEEecCCccCCCCCCCCC-CCeEEEEEhhhchhhcCCCcccccccCCCCcccc
Confidence 99999932 21 11 11112467887764 9887 55 667888888766555442111
Q ss_pred ---CCCCCCcHHHHHHHHHHHHHHhhccH---HHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEee---C
Q psy6547 137 ---GSTYGGNPLACKLAMTALDVILEENM---IENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSV---S 207 (266)
Q Consensus 137 ---~~~~~~~~~~~~a~~~~l~~~~~~~~---~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---~ 207 (266)
....+.+.+.+..+...+..+..+++ .+....++.|+.++|.+ -....... ..+..-.=+.++++. .
T Consensus 736 ga~s~~~~g~a~~~l~a~~yi~~lG~~GL~~~a~~ailnAnYl~~rL~~-~~~~l~~~---~~~~~~hEfv~~~~~~~~~ 811 (939)
T TIGR00461 736 GSVSAAPYGSASILPISWMYIKMMGNEGLPKASVVAILNANYMATRLKD-HYPILFVG---TLKHVAHECILDLRPLKAK 811 (939)
T ss_pred ccccccccCcHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHhhc-cCcccccC---CCCceeEEEEEeccchhhh
Confidence 11123444555666677777777654 44455688889999887 22111110 011100013334331 1
Q ss_pred ccchHHHHHHHHHHCCceeccC---CCCEEEEeccCCCCHHHHHHHHHHHHHHHHHH
Q psy6547 208 AILEVYDVCIKMKDAGLVTKPI---SNNIIRLSPALNITEQELREGLDIIINTINTM 261 (266)
Q Consensus 208 ~~~~~~~~~~~l~~~gi~~~~~---~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~ 261 (266)
.+.+..+++++|.+.|+..-.. ..+.+.+.+.-..+++|||++++.+.++-++.
T Consensus 812 ~g~~~~dIakrL~d~G~hapt~~~pv~g~lmiepTE~eskeelD~f~~al~~I~~e~ 868 (939)
T TIGR00461 812 TGIEAIDVAKRLQDYGFHAPTLSFPVPGTLMVEPTESESLEELDRFCDAMIAIKEEI 868 (939)
T ss_pred cCCCHHHHHHHHHhCCeeccccCCccCCeEEEEeeccCCHHHHHHHHHHHHHHHHHH
Confidence 1356899999999999975321 23478888889999999999999998876664
No 320
>PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=99.40 E-value=8.7e-12 Score=109.73 Aligned_cols=224 Identities=13% Similarity=0.108 Sum_probs=135.0
Q ss_pred CCCCCCceeecCC-CHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCcc
Q psy6547 14 GPHMPGYNIIPYN-DVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKL 92 (266)
Q Consensus 14 ~~~~~~v~~~~~~-d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~ 92 (266)
..++.++++++.+ |++++++++ .+++++|++|.+.|+.+.+. ++++|+++|+++|+++|+|+++. .+
T Consensus 122 ~~~Gi~v~~vd~~~d~~~l~~~I--~~~Tk~I~~e~pgnP~~~v~----Di~~I~~iA~~~gi~livD~T~~------tP 189 (432)
T PRK06702 122 RKLGIDVTFFNPNLTADEIVALA--NDKTKLVYAESLGNPAMNVL----NFKEFSDAAKELEVPFIVDNTLA------TP 189 (432)
T ss_pred HHCCCEEEEECCCCCHHHHHHhC--CcCCeEEEEEcCCCcccccc----CHHHHHHHHHHcCCEEEEECCCC------ch
Confidence 4567888899885 899999999 56789999999888888887 89999999999999999999983 22
Q ss_pred ccccc--CCCCcCeeeecccccCCchhhhhhee-cH----------Hhhh---------------------ccC-CCCCC
Q psy6547 93 LAIHY--EDVRPDIVILGKALSGGLYPISAVLA-DD----------EVMG---------------------TLV-PGTHG 137 (266)
Q Consensus 93 ~~~~~--~~~~~d~~~~sK~~~~g~~~~g~~~~-~~----------~~~~---------------------~~~-~~~~~ 137 (266)
..... .|.+..+.+++|.++|...-+|.++. .. .+.+ ... .....
T Consensus 190 ~~~~pl~~GADIvv~S~TKy~~Ghsd~l~G~v~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (432)
T PRK06702 190 YLCQAFEHGANIIVHSTTKYIDGHASSLGGIVIDGGNFDWTNGKYPELVEPDPSYHGVSYVQNFGAAAYIVKARVQLLRD 269 (432)
T ss_pred hhCChhhcCCCEEEEccccccCCCcceeceEEEeCCCcccccccccccccccccccccchhhccchhhHHHHHHHHHHHH
Confidence 23332 34445555599988732122322221 11 1110 000 00111
Q ss_pred CCCCCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhcccc------cCCCccc---------E-EecCccceeeE
Q psy6547 138 STYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSSPAN------KSKASFK---------L-SSGGLKKSINT 201 (266)
Q Consensus 138 ~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~------~~~~~~~---------~-~~~g~~~~~~~ 201 (266)
.....+|+.+..+...|+-+ +-..++..++...+.+.|++ .+ .+.+... . .+.|. ++.
T Consensus 270 ~g~~~sp~~a~l~~rgL~Tl--~lR~~r~~~Na~~la~~L~~-~p~V~~V~yPgl~~~p~~~l~~~~~~~g~gg---~~s 343 (432)
T PRK06702 270 YGNCMSPFNAYISNIGLETL--HLRMERHSENALAVAKWLAD-HERIEWVNYPGLDSNENYSLAQKYLKKGASG---VLT 343 (432)
T ss_pred ccCCCCHHHHHHHHhccCcH--HHHHHHHHHHHHHHHHHHHh-CCCcceEECCCCCCCccHHHHHHhCcCCCce---EEE
Confidence 22366777777666666533 22344445667777777765 22 1222110 1 24567 899
Q ss_pred EEEeeCccchHHHHHHHHHHCCc----------eeccC-----------------CCCEEEEeccCCCCHHHHHHHHHHH
Q psy6547 202 LILSVSAILEVYDVCIKMKDAGL----------VTKPI-----------------SNNIIRLSPALNITEQELREGLDII 254 (266)
Q Consensus 202 ~~~~~~~~~~~~~~~~~l~~~gi----------~~~~~-----------------~~~~iR~~~~~~~t~~~i~~~~~~l 254 (266)
|++.. +...+.+|++.|+=-.+ +..|. ..+.+|+|..+. +.+.+++.|
T Consensus 344 f~l~~-~~~~~~~f~~~l~l~~~a~slGg~~Slv~~p~~~th~~~~~~~~~~~Gi~~~liRlSvGlE----d~eDLi~Dl 418 (432)
T PRK06702 344 FGIKG-GLEAAKEFIANVKLATLVTHVADARTCVIHPASTTHRQLSAEDQRLAGVTSDLIRLSVGIE----DVSDIIADL 418 (432)
T ss_pred EEecC-CHHHHHHHHHhCccceeccccCCCCcceECCCCCCcccCCHHHHHhcCCCCCeEEEEeccC----CHHHHHHHH
Confidence 99964 12345567666642111 11111 236899995544 566777778
Q ss_pred HHHHHH
Q psy6547 255 INTINT 260 (266)
Q Consensus 255 ~~~~~~ 260 (266)
+++++.
T Consensus 419 ~~Al~~ 424 (432)
T PRK06702 419 EAALVG 424 (432)
T ss_pred HHHHhc
Confidence 777754
No 321
>PRK11658 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase; Provisional
Probab=99.39 E-value=2.8e-11 Score=105.71 Aligned_cols=225 Identities=17% Similarity=0.171 Sum_probs=136.1
Q ss_pred CCCCCceeecC------CCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEecccc-CcC
Q psy6547 15 PHMPGYNIIPY------NDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQT-GLG 87 (266)
Q Consensus 15 ~~~~~v~~~~~------~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~-~~~ 87 (266)
..+.+++.++. .|++++++++ .+++++|+... ++|... ++++|.++|+++|+++|+|++|+ |..
T Consensus 92 ~~G~~~v~vd~~~~~~~~d~~~l~~~i--~~~tkav~~~~---~~G~~~----d~~~i~~~a~~~gi~vi~D~a~a~g~~ 162 (379)
T PRK11658 92 LLGATPVMVDVDRDTLMVTPEAIEAAI--TPRTKAIIPVH---YAGAPA----DLDAIRAIGERYGIPVIEDAAHAVGTY 162 (379)
T ss_pred HcCCEEEEEecCCCcCCcCHHHHHHhc--ccCCeEEEEeC---CCCCcC----CHHHHHHHHHHcCCeEEEECCCccCCe
Confidence 35666777663 2789999999 45678877332 255554 88999999999999999999995 221
Q ss_pred CcCcccccccCCCCcCeeeec--ccccCCchhhhhheec-HHhhhccCCCC------------------------CCCCC
Q psy6547 88 RTGKLLAIHYEDVRPDIVILG--KALSGGLYPISAVLAD-DEVMGTLVPGT------------------------HGSTY 140 (266)
Q Consensus 88 ~~g~~~~~~~~~~~~d~~~~s--K~~~~g~~~~g~~~~~-~~~~~~~~~~~------------------------~~~~~ 140 (266)
..|. ....++ .++.+|+ |.+++| +.|+++.+ +++.+.++... .+.++
T Consensus 163 ~~~~--~~g~~g--~~~~Sf~~~K~l~~g--~GG~v~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~G~n~ 236 (379)
T PRK11658 163 YKGR--HIGARG--TAIFSFHAIKNITCA--EGGLVVTDDDELADRLRSLKFHGLGVDAFDRQTQGRAPQAEVLTPGYKY 236 (379)
T ss_pred ECCe--ecCCCC--CEEEeCCCCCcCccc--CceEEEECCHHHHHHHHHHHHcCCCcchhhhhcccCCCcceeecccccc
Confidence 2222 122233 3566666 667654 57777664 56655443210 01123
Q ss_pred CCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccc-eeeEEEEeeC-ccchHHHHHHH
Q psy6547 141 GGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKK-SINTLILSVS-AILEVYDVCIK 218 (266)
Q Consensus 141 ~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~-~~~~~~~~~~~ 218 (266)
..+.+.++.+...++. -++..++.+++.+.+.+.|++ ++...+.. +...+..+ ..+.+.++.. .+.+..++.+.
T Consensus 237 ~~~~l~AAl~~~ql~~--l~~~~~~r~~~a~~~~~~L~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 312 (379)
T PRK11658 237 NLADINAAIALVQLAK--LEALNARRREIAARYLQALAD-LPFQPLSL-PAWPHQHAWHLFIIRVDEERCGISRDALMEA 312 (379)
T ss_pred CcCHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhcC-CCCccCcC-CCCCCceeEEEEEEEECCccccCCHHHHHHH
Confidence 3344444444444433 245678888888888899887 54322211 11001000 0333343321 13467899999
Q ss_pred HHHCCceeccC-------------------------CCCEEEEeccCCCCHHHHHHHHHHHHHHH
Q psy6547 219 MKDAGLVTKPI-------------------------SNNIIRLSPALNITEQELREGLDIIINTI 258 (266)
Q Consensus 219 l~~~gi~~~~~-------------------------~~~~iR~~~~~~~t~~~i~~~~~~l~~~~ 258 (266)
|.++||.++.. ....+.+-++...|++++++.++.|++++
T Consensus 313 L~~~gI~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~l~lP~~~~l~~~~~~~i~~~i~~~~ 377 (379)
T PRK11658 313 LKERGIGTGLHFRAAHTQKYYRERFPTLSLPNTEWNSERICSLPLFPDMTDADVDRVITALQQIA 377 (379)
T ss_pred HHHCCCCCcccCcCcccChhhhccCCCCCChHHHHHHhCeEEccCCCCCCHHHHHHHHHHHHHHH
Confidence 99999876521 11445555567899999999999999875
No 322
>PRK08114 cystathionine beta-lyase; Provisional
Probab=99.39 E-value=5.7e-12 Score=109.62 Aligned_cols=228 Identities=11% Similarity=0.026 Sum_probs=136.8
Q ss_pred CCCCCCceeecCCCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcC--CEEEEeccccCcCCcCc
Q psy6547 14 GPHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYN--VLFIADEVQTGLGRTGK 91 (266)
Q Consensus 14 ~~~~~~v~~~~~~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g--~~li~De~~~~~~~~g~ 91 (266)
..++.+|..++..|.+++++++ .+++++|++|.+.|+.+.+. ++++|+++|+++| +++++|.+++ .+.
T Consensus 123 ~~~Gi~v~~vd~~d~~~l~~~l--~~~TrlV~~EtpsNp~~~v~----DI~~Ia~ia~~~g~g~~lvVDnT~a----~p~ 192 (395)
T PRK08114 123 SKLGVTTTWFDPLIGADIAKLI--QPNTKVVFLESPGSITMEVH----DVPAIVAAVRSVNPDAVIMIDNTWA----AGV 192 (395)
T ss_pred HhcCcEEEEECCCCHHHHHHhc--CCCceEEEEECCCCCCCEee----cHHHHHHHHHHhCCCCEEEEECCCc----ccc
Confidence 4568899999999999999999 45789999999999999988 9999999999985 9999999994 122
Q ss_pred ccccccCCCCcCeeeecccccCCc-hhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHhhccHHHHHHHHH
Q psy6547 92 LLAIHYEDVRPDIVILGKALSGGL-YPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMG 170 (266)
Q Consensus 92 ~~~~~~~~~~~d~~~~sK~~~~g~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~ 170 (266)
.+....+|.+..+.+.+|+++|.- .-.|.++.+++..+.+.......-...+|..+......|+-+ .-..++..+++
T Consensus 193 ~~~pl~~GaDivv~S~tKyl~Ghsdv~~G~v~~~~~~~~~l~~~~~~~G~~~~p~~a~l~~rgl~TL--~lR~~~~~~na 270 (395)
T PRK08114 193 LFKALDFGIDISIQAGTKYLVGHSDAMIGTAVANARCWEQLRENSYLMGQMVDADTAYMTSRGLRTL--GVRLRQHEESS 270 (395)
T ss_pred ccCHHHcCCcEEEEcCcccccCCCcceeEEEEcCHHHHHHHHHHHHhccCCCCHHHHHHHHcCCCcH--HHHHHHHHHHH
Confidence 222233455555555889998540 235656666665554432111112234555554444433321 11233444455
Q ss_pred HHHHHHhhcc-----cccCCCccc---------EEecCccceeeEEEEeeC-ccchHHHHHHHHHH--CCc-------ee
Q psy6547 171 EIFRSELSSP-----ANKSKASFK---------LSSGGLKKSINTLILSVS-AILEVYDVCIKMKD--AGL-------VT 226 (266)
Q Consensus 171 ~~l~~~l~~~-----~~~~~~~~~---------~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~l~~--~gi-------~~ 226 (266)
..+.+.|++- ...+.++.. ..+.|. ++.|++... +.....+|++.|.= .+. ++
T Consensus 271 ~~va~~L~~hp~V~~V~yPgl~~~p~~~~~~~~~~g~gg---~~sf~l~~~~~~~~~~~f~~~l~l~~~a~SlGg~~SLi 347 (395)
T PRK08114 271 LKVAEWLAEHPEVARVNHPALPGCKGHEFWKRDFTGSSG---LFSFVLKKKLTDEQLANYLDNFSLFSMAYSWGGFESLI 347 (395)
T ss_pred HHHHHHHHcCCCEeEEECCCCCCCccHHHHHhhCCCCce---EEEEEecCcccHHHHHHHHHhCCcceeecccCCcccee
Confidence 5555655540 112222211 124566 999998641 11234556655532 111 11
Q ss_pred c---c-------------CCCCEEEEeccCCCCHHHHHHHHHHHHHHHHH
Q psy6547 227 K---P-------------ISNNIIRLSPALNITEQELREGLDIIINTINT 260 (266)
Q Consensus 227 ~---~-------------~~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~ 260 (266)
. | ..++.||+|..+. +.+.+++.|+++++.
T Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~liRlSvGlE----d~~DLi~Dl~~Al~~ 393 (395)
T PRK08114 348 LANQPEEIAAIRPAGEVDFTGTLIRLHIGLE----DVDDLIADLAAGFAR 393 (395)
T ss_pred ccCCchhhhccCChhHhcCCCCeEEEEeccC----CHHHHHHHHHHHHHh
Confidence 1 0 1236899995544 566777777777764
No 323
>PRK02769 histidine decarboxylase; Provisional
Probab=99.38 E-value=7.9e-11 Score=102.46 Aligned_cols=207 Identities=14% Similarity=0.128 Sum_probs=140.8
Q ss_pred CHHHHHHHHhcC-CCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcC---CEEEEeccccCcCC----cCcccccccC
Q psy6547 27 DVDALEAKLKSN-PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYN---VLFIADEVQTGLGR----TGKLLAIHYE 98 (266)
Q Consensus 27 d~~~l~~~l~~~-~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g---~~li~De~~~~~~~----~g~~~~~~~~ 98 (266)
|+++|+++++++ +.+.+|+++...+.+|.+- ++++|.++|++|| +++++|.+|+++-. ....+.+..
T Consensus 146 d~~~L~~~i~~~~~~t~lvv~t~gtt~tG~id----pi~~I~~i~~~~g~~~~~lHVDaA~gg~~~p~~~~~~~~d~~~- 220 (380)
T PRK02769 146 DYDDLISKIKENKNQPPIIFANIGTTMTGAID----NIKEIQEILKKIGIDDYYIHADAALSGMILPFVNNPPPFSFAD- 220 (380)
T ss_pred cHHHHHHHHHhCCCCcEEEEEEeCCCCCcccC----CHHHHHHHHHHhCCCceEEEEEecccceeecccCccccCCccC-
Confidence 899999999653 2478888998999999986 9999999999998 69999999976311 001122221
Q ss_pred CCCcCeee--ecccccCCchhhhhheecHHhhhccCCC-----CCCCCCCCc--HHHHHHHHHHHHHHhhc---cHHHHH
Q psy6547 99 DVRPDIVI--LGKALSGGLYPISAVLADDEVMGTLVPG-----THGSTYGGN--PLACKLAMTALDVILEE---NMIENA 166 (266)
Q Consensus 99 ~~~~d~~~--~sK~~~~g~~~~g~~~~~~~~~~~~~~~-----~~~~~~~~~--~~~~~a~~~~l~~~~~~---~~~~~~ 166 (266)
.+|.++ ..|.++++ .+.|+++.+++..+.+... ....++.++ .....+...+|+.++.+ +..++.
T Consensus 221 --~vDsis~s~HK~~~~P-~g~G~l~~r~~~~~~~~~~~~yl~~~d~t~~GSR~g~~~l~lw~aL~~lg~~G~~~~~~~~ 297 (380)
T PRK02769 221 --GIDSIAISGHKFIGSP-MPCGIVLAKKKYVERISVDVDYIGSRDQTISGSRNGHTALLLWAAIRSLGSKGLRQRVQHC 297 (380)
T ss_pred --CCCEEEECCcccCCCC-CCcEEEEEehhhhhhcccCccccCCCCCCccCCCCcHHHHHHHHHHHHHCHHHHHHHHHHH
Confidence 466666 55988867 7899998888776655321 011122333 34566777888877664 466778
Q ss_pred HHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccCCCCEEEEeccCCCCHHH
Q psy6547 167 YKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQE 246 (266)
Q Consensus 167 ~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~iR~~~~~~~t~~~ 246 (266)
.++++++.++|++ .+...+.. ...+ ++.|..++ +++. +|..+.+. .+.+|++++..++++.
T Consensus 298 ~~la~~l~~~L~~-~g~~~~~~---p~~~---~v~f~~~~------~~~~-----~~w~l~~~-~~~~hi~~~~~~~~~~ 358 (380)
T PRK02769 298 LDMAQYAVDRLQA-NGIPAWRN---PNSI---TVVFPCPS------ERIW-----KKWHLATS-GNQAHIITMPHHNKQQ 358 (380)
T ss_pred HHHHHHHHHHHHh-CCCEEEcC---CCce---EEEEcCCC------HHHH-----hCeeEccc-CCEEEEEECCCCCHHH
Confidence 8899999999987 43222211 1122 45554333 1222 56666665 4599999999999999
Q ss_pred HHHHHHHHHHHHHH
Q psy6547 247 LREGLDIIINTINT 260 (266)
Q Consensus 247 i~~~~~~l~~~~~~ 260 (266)
+|.+++.|.+.+..
T Consensus 359 ~~~f~~dl~~~~~~ 372 (380)
T PRK02769 359 IDSLIDELIFDLKN 372 (380)
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999887653
No 324
>PRK04311 selenocysteine synthase; Provisional
Probab=99.38 E-value=1.1e-10 Score=103.60 Aligned_cols=234 Identities=13% Similarity=0.122 Sum_probs=143.3
Q ss_pred CCCCCceeecC---CCHHHHHHHHhcCCCEEEEEEccccCC--CC--cccCChHHHHHHHHHHHhcCCEEEEeccccCcC
Q psy6547 15 PHMPGYNIIPY---NDVDALEAKLKSNPNICAFMVEPIQGE--AG--AVVPDDGYLKKVRALCSQYNVLFIADEVQTGLG 87 (266)
Q Consensus 15 ~~~~~v~~~~~---~d~~~l~~~l~~~~~~~~i~~~~~~~~--~g--~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~ 87 (266)
..+.+++.|+. .+++++++++ +++++++++++..|. .| ... ++++|.++|++||+++++|.....++
T Consensus 190 ~~G~~l~~v~~~~~t~~~dle~aI--~~~TklV~~vh~sN~~i~G~~~~~----dl~eI~~lak~~gi~vivD~gsG~l~ 263 (464)
T PRK04311 190 QAGARLVEVGTTNRTHLRDYEQAI--NENTALLLKVHTSNYRIEGFTKEV----SLAELAALGKEHGLPVVYDLGSGSLV 263 (464)
T ss_pred HCCcEEEEECCCCCCCHHHHHHhc--CccCeEEEEEcCCCccccccCCcC----CHHHHHHHHHHcCCeEEEECCCcccc
Confidence 34667777876 3688999999 557899988877664 34 333 89999999999999999999642222
Q ss_pred C---cC---cccccccCCCCcCeeeec--ccccCCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHhh
Q psy6547 88 R---TG---KLLAIHYEDVRPDIVILG--KALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILE 159 (266)
Q Consensus 88 ~---~g---~~~~~~~~~~~~d~~~~s--K~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~ 159 (266)
. .| .+...+.....+|++++| |+++|+ . .|++++++++++.++.......+...-...++..++|..+..
T Consensus 264 ~~~~~gl~~~p~~~~~l~~GaDiv~fSg~K~LgGp-~-~G~i~g~~~li~~l~~~~~~r~lr~dk~~l~~l~~~l~~~~~ 341 (464)
T PRK04311 264 DLSQYGLPDEPTVQELLAAGVDLVTFSGDKLLGGP-Q-AGIIVGKKELIARLKKHPLKRALRVDKLTLAALEATLRLYLD 341 (464)
T ss_pred cchhccCCCCCchhhHHhcCCcEEEecCcccccCC-c-eEEEEEcHHHHHHHhhchhHHHHhcchHHHHHHHHHHHHHhC
Confidence 1 11 111112223467888877 999876 3 888899999888776433333333344455555555653321
Q ss_pred c--cH------------HHHHHHHHHHHHHHhhcccccC-CCcc----cEEecCc----cceeeEEEEeeCccchHHHHH
Q psy6547 160 E--NM------------IENAYKMGEIFRSELSSPANKS-KASF----KLSSGGL----KKSINTLILSVSAILEVYDVC 216 (266)
Q Consensus 160 ~--~~------------~~~~~~~~~~l~~~l~~~~~~~-~~~~----~~~~~g~----~~~~~~~~~~~~~~~~~~~~~ 216 (266)
. .+ .++..+++..+.+.|+...+.. .+.. ..-|.|. +.|-+.+.+... +.++.++.
T Consensus 342 ~~~~~~~i~~l~~l~~~~~~~~~~A~~la~~L~~~~~~~~~~~~~~~~~~~gggs~p~~~~~~~~v~~~~~-~~~~~~l~ 420 (464)
T PRK04311 342 PEKLAEEIPTLRLLTRSPEELRARAERLAAALKAALGAAFAVEVVPSFSQVGGGSLPVDRLPSAAVTLTPK-DRSLEALA 420 (464)
T ss_pred hhhhhhhCcHHHHhcCCHHHHHHHHHHHHHHHHhccCCCeeEEEEEccCccCCCCCcCCCCCeEEEEEeCC-CCCHHHHH
Confidence 1 01 1444556666666665511100 0010 0011121 124455555432 35688999
Q ss_pred HHHHHC--CceeccCCCCEEEEeccCCCCHHHHHHHHHHHHHHHH
Q psy6547 217 IKMKDA--GLVTKPISNNIIRLSPALNITEQELREGLDIIINTIN 259 (266)
Q Consensus 217 ~~l~~~--gi~~~~~~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~ 259 (266)
++|++- .|+.+.. .+.+.+-+. ...++|++.++++|.+.+.
T Consensus 421 ~~lr~~~~~i~~r~~-~~~~~ld~r-~~~~~~~~~~~~~~~~~~~ 463 (464)
T PRK04311 421 ARLRLLPPPVIGRIE-DGRLLLDLR-TLEEEDEERLAAALLEALN 463 (464)
T ss_pred HHHhcCCCCEEEEEE-CCEEEEEeC-cCCHHHHHHHHHHHHHHhh
Confidence 999874 5666543 677777654 5688899999999988764
No 325
>COG0399 WecE Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=99.37 E-value=2.3e-11 Score=104.06 Aligned_cols=234 Identities=17% Similarity=0.240 Sum_probs=149.5
Q ss_pred CCcCcccccCCCCCCceeecCC-CHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccc
Q psy6547 5 TDPTSYNEFGPHMPGYNIIPYN-DVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQ 83 (266)
Q Consensus 5 ~~~~~~~~~~~~~~~v~~~~~~-d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~ 83 (266)
+|+....+..|...+|..-.+| |++.+|+.| .+++++|+.....+. .+ ++++|.++|++||++||+|.+|
T Consensus 88 an~i~~~Ga~PVFvDid~~T~nid~~~ie~aI--t~~tKAIipVhl~G~---~~----dm~~i~~la~~~~l~vIEDaAq 158 (374)
T COG0399 88 ANAVLLVGAKPVFVDIDPDTLNIDPDLIEAAI--TPRTKAIIPVHLAGQ---PC----DMDAIMALAKRHGLPVIEDAAQ 158 (374)
T ss_pred HHHHHHcCCeEEEEecCCcccCCCHHHHHHHc--ccCCeEEEEehhccC---CC----CHHHHHHHHHHcCCeEEEEcch
Confidence 3344444455555555544455 899999999 556999998887754 33 8999999999999999999999
Q ss_pred cCcCCcCcccccccCCCCcCeeeec----ccccCCchhhhhhee-cHHhhhccCCC----------------CCCCCCCC
Q psy6547 84 TGLGRTGKLLAIHYEDVRPDIVILG----KALSGGLYPISAVLA-DDEVMGTLVPG----------------THGSTYGG 142 (266)
Q Consensus 84 ~~~~~~g~~~~~~~~~~~~d~~~~s----K~~~~g~~~~g~~~~-~~~~~~~~~~~----------------~~~~~~~~ 142 (266)
+ + |..+--+..|-.-|+.+|| |.++.| -.|.++. ++++.+.++.. ..+..+-.
T Consensus 159 a-~---Ga~y~gk~vGt~Gd~~~fSF~~~K~ittg--EGGav~tnd~ela~k~~~lr~hG~~~~~~~~y~~~~~G~N~rm 232 (374)
T COG0399 159 A-H---GATYKGKKVGSFGDIGAFSFHATKNLTTG--EGGAVVTNDEELAEKARSLRNHGLSRDAVFKYLHEELGYNYRL 232 (374)
T ss_pred h-c---cCeecCcccccccceEEEEecCCCCcccc--CceEEEeCCHHHHHHHHHHHHhCcCCCccccceeeecccccCH
Confidence 4 3 2222222334445666655 988855 3555665 44555555321 12333444
Q ss_pred cHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhcccccCCCcccEEe---cCccceeeEEEEeeCccchHHHHHHHH
Q psy6547 143 NPLACKLAMTALDVILEENMIENAYKMGEIFRSELSSPANKSKASFKLSS---GGLKKSINTLILSVSAILEVYDVCIKM 219 (266)
Q Consensus 143 ~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~l 219 (266)
+-+.++.++.-|+.+ +++.++-+++.+.+.+.|++ +....++....+ .-. ++.+.+++. +.+.+.+.+.|
T Consensus 233 ~~iqAAigl~QL~~l--~~~~~~R~~~a~~Y~~~l~~-~~~~~~p~~~~~~~~~~~---~~~i~~~~~-~~~R~~l~~~L 305 (374)
T COG0399 233 TEIQAAIGLAQLERL--DEINERRREIAQIYAEALKG-LPGITLPPEPDGAVHAWH---LYTILVDEE-GISRDALMESL 305 (374)
T ss_pred HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhc-CCCccccCCCCCceeeee---eeEEEecCC-CCCHHHHHHHH
Confidence 555555555555433 55778888888889988887 543222221111 122 333444432 35678899999
Q ss_pred HHCCcee----ccC-----------------------CCCEEEEeccCCCCHHHHHHHHHHHHHHHHH
Q psy6547 220 KDAGLVT----KPI-----------------------SNNIIRLSPALNITEQELREGLDIIINTINT 260 (266)
Q Consensus 220 ~~~gi~~----~~~-----------------------~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~ 260 (266)
.++||.. .|. ....+.+-++...+++++++.++.|++++..
T Consensus 306 ~~~gi~~~~~~~P~~~~~~~~~~~~~~~~~lp~ae~~~~r~l~LP~~p~l~~~~~~~V~~~l~~~~~~ 373 (374)
T COG0399 306 KEAGVGAVVYFRPLHLQPAYRQLGYFPEGDLPNAEDLSERILSLPLHPNLSEEDVDRVIEALKEVLGS 373 (374)
T ss_pred HhCCCCceEEeeccccchhhhcccccccCCCchHHHHhhCeEEccCCCCCCHHHHHHHHHHHHHHhcc
Confidence 9996653 231 1256778778899999999999999998754
No 326
>PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=99.37 E-value=8.5e-12 Score=110.31 Aligned_cols=99 Identities=18% Similarity=0.205 Sum_probs=75.4
Q ss_pred CCCCCCceeecCCCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCccc
Q psy6547 14 GPHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLL 93 (266)
Q Consensus 14 ~~~~~~v~~~~~~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~ 93 (266)
..++.+++.++..|++++++++ .+++++|+++.+.|++|.+. ++++|.++|+++|+++|+|+++.. +....
T Consensus 125 ~~~Gv~v~~vd~~d~e~l~~ai--~~~tklV~l~sp~NPtG~v~----di~~I~~la~~~gi~vIvD~t~a~-~~~~~-- 195 (431)
T PRK08248 125 PKLGITVKFVDPSDPENFEAAI--TDKTKALFAETIGNPKGDVL----DIEAVAAIAHEHGIPLIVDNTFAS-PYLLR-- 195 (431)
T ss_pred HhCCEEEEEECCCCHHHHHHhc--CCCCeEEEEECCCCCCCccc----CHHHHHHHHHHcCCEEEEeCCCCc-cccCC--
Confidence 3467889999998999999999 44689999998888999887 789999999999999999999841 11111
Q ss_pred ccccCCCCcCeeeecccccC-Cchhhhhhee
Q psy6547 94 AIHYEDVRPDIVILGKALSG-GLYPISAVLA 123 (266)
Q Consensus 94 ~~~~~~~~~d~~~~sK~~~~-g~~~~g~~~~ 123 (266)
.. .+|.+..+.+++|+++| | .++|+++.
T Consensus 196 pl-~~gaDivv~S~tK~lgg~g-~~~Gg~v~ 224 (431)
T PRK08248 196 PI-EHGADIVVHSATKFIGGHG-TSIGGVIV 224 (431)
T ss_pred hh-HcCCCEEEEcCccccCCCC-CceEEEEE
Confidence 11 24555555558899994 4 56776555
No 327
>TIGR01788 Glu-decarb-GAD glutamate decarboxylase. This model represents the pyridoxal phosphate-dependent glutamate (alpha) decarboxylase found in bacteria (low and hi-GC gram positive, proteobacteria and cyanobacteria), plants, fungi and at least one archaon (Methanosarcina). The product of the enzyme is gamma-aminobutyrate (GABA).
Probab=99.36 E-value=6.6e-11 Score=104.42 Aligned_cols=221 Identities=12% Similarity=0.079 Sum_probs=144.4
Q ss_pred CHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhc------CCEEEEeccccCcCC---cCc-ccccc
Q psy6547 27 DVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQY------NVLFIADEVQTGLGR---TGK-LLAIH 96 (266)
Q Consensus 27 d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~------g~~li~De~~~~~~~---~g~-~~~~~ 96 (266)
|+++|+++|+ +++.+|++...++.+|.+- ++++|.++|+++ |+++++|.+|+|+.. .+. .+.+.
T Consensus 175 d~~~L~~~i~--~~t~lV~~t~g~t~tG~id----pi~~I~~i~~~~~~~~~~~~~~HvDaaq~g~~~p~~~~~~~~~~~ 248 (431)
T TIGR01788 175 DPEQVVEAVD--ENTIGVVCILGTTYTGEYE----DVKALNDALDEYNAKTGWDIPIHVDAASGGFIAPFVYPDLEWDFR 248 (431)
T ss_pred CHHHHHHHHh--hCCeEEEEEeCCCCCcccC----CHHHHHHHHHHHHhhhCCCceEEEecccHHHHHHHhCCCchhhcC
Confidence 7899999994 4578899999999999986 999999999999 999999999976310 121 12222
Q ss_pred cCCCCcCeee--ecccccCCchhhhhheecHH--hhhccCC---CCC----CCCCCCcHH--HHHHHHHHHHHHhh---c
Q psy6547 97 YEDVRPDIVI--LGKALSGGLYPISAVLADDE--VMGTLVP---GTH----GSTYGGNPL--ACKLAMTALDVILE---E 160 (266)
Q Consensus 97 ~~~~~~d~~~--~sK~~~~g~~~~g~~~~~~~--~~~~~~~---~~~----~~~~~~~~~--~~~a~~~~l~~~~~---~ 160 (266)
.. .+|.++ ..|++.++ ...|+++.+++ +.+.+.. +.. ..++..+.. ........|..+.. +
T Consensus 249 ~~--~~DSis~s~HK~~~~P-~g~G~l~~r~~~~l~~~~~~~~~yl~~~~~~~t~~~sR~g~~al~~w~~l~~lG~~G~~ 325 (431)
T TIGR01788 249 LP--RVKSINVSGHKYGLVY-PGVGWVIWRDEEALPEELIFHVNYLGGDEPTFTLNFSRPANQVIAQYYNFLRLGREGYR 325 (431)
T ss_pred CC--CceEEEECchhccCCC-CCcEEEEEeChHHcchhheecccccCCCCCCcceecCchHHHHHHHHHHHHHhcHHHHH
Confidence 22 345555 55987555 67888877653 2222210 110 112222322 22334444444444 3
Q ss_pred cHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCc--cchHHHHHHHHHHCCceec----cC---CC
Q psy6547 161 NMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSA--ILEVYDVCIKMKDAGLVTK----PI---SN 231 (266)
Q Consensus 161 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~--~~~~~~~~~~l~~~gi~~~----~~---~~ 231 (266)
++.++..++.+++.++|++ .+. +.. . +.+...+++.|.+...+ +.+..++.++|.++|+.+. |. +.
T Consensus 326 ~i~~~~~~la~~l~~~L~~-~~~--~el-~-~~~~~~~iV~Fr~~~~~~~~~~~~~l~~~L~~~G~~~~~~~~p~~~~~~ 400 (431)
T TIGR01788 326 KIMQNSLDVARYLAEEIAK-LGP--FEI-I-SDGSGIPLVAFKLKDDADPGYTLYDLSHRLRERGWIVPAYTLPKNAEDI 400 (431)
T ss_pred HHHHHHHHHHHHHHHHHHh-CCC--EEE-e-eCCCCceEEEEEeCCCCCCCcCHHHHHHHHHHCCCcccCCCCCCccCCe
Confidence 4677788899999999987 442 211 1 10012237778776421 3467889999999999752 22 33
Q ss_pred CEEEEeccCCCCHHHHHHHHHHHHHHHHHH
Q psy6547 232 NIIRLSPALNITEQELREGLDIIINTINTM 261 (266)
Q Consensus 232 ~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~ 261 (266)
.++|++.....+++.++.+++.|.+++..+
T Consensus 401 ~~lR~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (431)
T TIGR01788 401 VVMRIVVREGFSRDLAELLIEDIEAALAYL 430 (431)
T ss_pred EEEEEEecCCCCHHHHHHHHHHHHHHHHhh
Confidence 578999888889999999999999988764
No 328
>PRK05994 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=99.35 E-value=1.2e-11 Score=109.48 Aligned_cols=97 Identities=19% Similarity=0.239 Sum_probs=72.4
Q ss_pred CCCCCCceeecCCCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCccc
Q psy6547 14 GPHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLL 93 (266)
Q Consensus 14 ~~~~~~v~~~~~~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~ 93 (266)
..++.+++.++.+|++++++++ ++++++|++++++|++|.+. ++++|.++|+++|+++|+|++++. +.
T Consensus 124 ~~~G~~v~~vd~~d~~~l~~ai--~~~tklV~vesp~NptG~v~----dl~~I~~la~~~gi~livD~a~a~----~~-- 191 (427)
T PRK05994 124 KSFGWQVRWADADDPASFERAI--TPRTKAIFIESIANPGGTVT----DIAAIAEVAHRAGLPLIVDNTLAS----PY-- 191 (427)
T ss_pred HhcCcEEEEECCCCHHHHHHhc--CcCCeEEEEECCCCCCCeec----CHHHHHHHHHHcCCEEEEECCccc----cc--
Confidence 4467788899888999999999 45789999999999999887 799999999999999999999952 11
Q ss_pred ccccCCCCcCeee--ecccccCCchhhhhhe
Q psy6547 94 AIHYEDVRPDIVI--LGKALSGGLYPISAVL 122 (266)
Q Consensus 94 ~~~~~~~~~d~~~--~sK~~~~g~~~~g~~~ 122 (266)
........+|+++ ++|.++|..-.+|.++
T Consensus 192 ~~~pl~~gaDivv~S~tK~lgg~~~~~gG~v 222 (427)
T PRK05994 192 LIRPIEHGADIVVHSLTKFLGGHGNSMGGII 222 (427)
T ss_pred cCCccccCCcEEEEcCccccCCCCCcEEEEE
Confidence 1112233455544 8899984212345443
No 329
>PRK15407 lipopolysaccharide biosynthesis protein RfbH; Provisional
Probab=99.32 E-value=3.7e-10 Score=100.23 Aligned_cols=213 Identities=18% Similarity=0.190 Sum_probs=130.1
Q ss_pred CHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCcccccccCCCCcCeee
Q psy6547 27 DVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVI 106 (266)
Q Consensus 27 d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~~~~~~~~~~d~~~ 106 (266)
|++++++.+ .+++++|++++..+ .. .++++|.++|++||++||+|++|+ +| ..+.-...|-..|+.+
T Consensus 148 d~~~le~~i--~~~tkaVi~~~~~G---~p----~dl~~I~~la~~~gi~vIeDaa~a-~G---~~~~g~~~G~~gd~~~ 214 (438)
T PRK15407 148 DASLLEAAV--SPKTKAIMIAHTLG---NP----FDLAAVKAFCDKHNLWLIEDNCDA-LG---STYDGRMTGTFGDIAT 214 (438)
T ss_pred CHHHHHHHc--CcCCeEEEEeCCCC---Ch----hhHHHHHHHHHHCCCEEEEECccc-hh---hhcCCeeeeccCceEE
Confidence 789999988 45789999887543 22 389999999999999999999994 22 1111011222235666
Q ss_pred ec----ccccCCchhhhhheecHH-hhhccCCC---------------------------------------CCCCCCCC
Q psy6547 107 LG----KALSGGLYPISAVLADDE-VMGTLVPG---------------------------------------THGSTYGG 142 (266)
Q Consensus 107 ~s----K~~~~g~~~~g~~~~~~~-~~~~~~~~---------------------------------------~~~~~~~~ 142 (266)
|| |.+.+| ..|+++.+.+ +.+.++.. ..+..+..
T Consensus 215 fSf~~~k~~~~g--eGG~l~t~d~~l~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~n~rm 292 (438)
T PRK15407 215 LSFYPAHHITMG--EGGAVFTNDPLLKKIIESFRDWGRDCWCAPGCDNTCGKRFGWQLGELPFGYDHKYTYSHLGYNLKI 292 (438)
T ss_pred EeCCCCCCcccc--CceEEEECCHHHHHHHHHHHHhCcccccccccccccccccccccccccccccccccccccccccCc
Confidence 55 667755 2577776543 33222100 02334456
Q ss_pred cHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccc-CCCcccEEecCccce--eeEEEEeeCccchHHHHHHHH
Q psy6547 143 NPLACKLAMTALDVILEENMIENAYKMGEIFRSELSSPANK-SKASFKLSSGGLKKS--INTLILSVSAILEVYDVCIKM 219 (266)
Q Consensus 143 ~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~~g~~~~--~~~~~~~~~~~~~~~~~~~~l 219 (266)
+.+.++.+...|+.+ ++..++.+++.+++.+.|.. +.. ...+. ...... .. .+.+.+.+..+.+..++++.|
T Consensus 293 sel~AAig~~qL~~l--~~~~~~R~~~a~~y~~~L~~-~~~~~~~~~-~~~~~~-~~~~~~~i~~~~~~~~~Rd~l~~~L 367 (438)
T PRK15407 293 TDMQAAIGLAQLEKL--PGFIEARKANFAYLKEGLAS-LEDFLILPE-ATPNSD-PSWFGFPITVKEDAGFTRVELVKYL 367 (438)
T ss_pred cHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhcc-CCCccccCc-CCCCCe-eEEEEEEEEECCcCCCCHHHHHHHH
Confidence 777777777777654 44677777888888888876 432 11211 111111 00 233333331134578999999
Q ss_pred HHCCceeccCC----------------------------CCEEEEeccCCCCHHHHHHHHHHHHHHHH
Q psy6547 220 KDAGLVTKPIS----------------------------NNIIRLSPALNITEQELREGLDIIINTIN 259 (266)
Q Consensus 220 ~~~gi~~~~~~----------------------------~~~iR~~~~~~~t~~~i~~~~~~l~~~~~ 259 (266)
.++||.+++.. ...+-+-++...+++++++.++.|+++++
T Consensus 368 ~~~GI~~~~~~~~~~~~~p~~~~~~~~~~~~~P~ae~~~~~~l~LP~~~~l~~~~v~~i~~~i~~~~~ 435 (438)
T PRK15407 368 EENKIGTRLLFAGNLTRQPYFKGVKYRVVGELTNTDRIMNDTFWIGVYPGLTEEMLDYVIEKIEEFFG 435 (438)
T ss_pred HHCCCCccccCCCccccChhhhhcCCCCCCCChHHHHHHhCeEEecCCCCCCHHHHHHHHHHHHHHHh
Confidence 99999764210 02244444556799999999999999875
No 330
>PRK08134 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=99.30 E-value=7.5e-11 Score=104.35 Aligned_cols=88 Identities=17% Similarity=0.140 Sum_probs=68.5
Q ss_pred CCCCCceeecCCCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEecccc-CcCCcCccc
Q psy6547 15 PHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQT-GLGRTGKLL 93 (266)
Q Consensus 15 ~~~~~v~~~~~~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~-~~~~~g~~~ 93 (266)
.++.++++++.+|++++++++ .+++++|+++.+.|++|.+. ++++|.++|+++|+++|+|.++. ++ ...
T Consensus 126 ~~Gi~v~~vd~~d~~~l~~~i--~~~TklV~~e~~~np~g~v~----Di~~I~~la~~~gi~livD~t~a~~~--~~~-- 195 (433)
T PRK08134 126 RFGIETTFVKPGDIDGWRAAI--RPNTRLLFGETLGNPGLEVL----DIPTVAAIAHEAGVPLLVDSTFTTPY--LLR-- 195 (433)
T ss_pred hCCeEEEEECCCCHHHHHHhc--CCCCeEEEEECCCcccCccc----CHHHHHHHHHHcCCEEEEECCCcccc--cCC--
Confidence 357788899888999999999 56789999999988888887 89999999999999999999994 22 111
Q ss_pred ccccCCCCcCeeeecccccC
Q psy6547 94 AIHYEDVRPDIVILGKALSG 113 (266)
Q Consensus 94 ~~~~~~~~~d~~~~sK~~~~ 113 (266)
.. .+|.+..+.+.+|.++|
T Consensus 196 pl-~~GaD~vv~S~tK~l~g 214 (433)
T PRK08134 196 PF-EHGADLVYHSATKFLGG 214 (433)
T ss_pred ch-hcCCCEEEeccccccCC
Confidence 11 23444444557799884
No 331
>cd00615 Orn_deC_like Ornithine decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life.
Probab=99.30 E-value=1.5e-11 Score=103.88 Aligned_cols=146 Identities=12% Similarity=0.088 Sum_probs=94.6
Q ss_pred CCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCcccc--cccCCCCcC
Q psy6547 26 NDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLA--IHYEDVRPD 103 (266)
Q Consensus 26 ~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~~--~~~~~~~~d 103 (266)
.|++++++.+++++++++++++.+ +.+|.+. ++++|.++|+++|+++++||+|......+..+. ....+.+..
T Consensus 140 i~~~~l~~~l~~~~~~k~v~l~~p-~~~G~~~----dl~~I~~~~~~~g~~livDeA~~~~~~~~~~~~~~~~~~~~div 214 (294)
T cd00615 140 IPPETFKKALIEHPDAKAAVITNP-TYYGICY----NLRKIVEEAHHRGLPVLVDEAHGAHFRFHPILPSSAAMAGADIV 214 (294)
T ss_pred CCHHHHHHHHHhCCCceEEEEECC-CCCCEec----CHHHHHHHHHhcCCeEEEECcchhhhccCcccCcchhhcCCcEE
Confidence 379999999976667888777643 4578876 799999999999999999999964212221111 222344444
Q ss_pred eeeecccccCCchhhh-hheecHHhh--hccCC-CCCCCCCCCcHHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHHHh
Q psy6547 104 IVILGKALSGGLYPIS-AVLADDEVM--GTLVP-GTHGSTYGGNPLACKLAMTALDVILE--ENMIENAYKMGEIFRSEL 177 (266)
Q Consensus 104 ~~~~sK~~~~g~~~~g-~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~a~~~~l~~~~~--~~~~~~~~~~~~~l~~~l 177 (266)
+.+++|+++| ++.| ++..+.+.. +.+.. .....+.+++.+.+++...+++.+.. +++.+++.++.+.+++++
T Consensus 215 ~~S~hK~l~g--~~~~~~l~~~~~~~~~~~~~~~~~~~~ttsps~~~~asl~~a~~~~~~~g~~~~~~~~~~~~~~r~~l 292 (294)
T cd00615 215 VQSTHKTLPA--LTQGSMIHVKGDLVNPDRVNEALNLHQSTSPSYLILASLDVARAMMALEGKELVEELIELALYARQEI 292 (294)
T ss_pred EEchhcccch--HhHHHHHHhCCCcCCHHHHHHHHHHHCCCCcHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 4558899854 5554 444443311 11111 12334556777788888888877654 346777888888888776
Q ss_pred h
Q psy6547 178 S 178 (266)
Q Consensus 178 ~ 178 (266)
.
T Consensus 293 ~ 293 (294)
T cd00615 293 N 293 (294)
T ss_pred h
Confidence 5
No 332
>TIGR00474 selA seryl-tRNA(sec) selenium transferase. In bacteria, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes SelA. This model excludes homologs that appear to differ in function from Frankia alni, Helicobacter pylori, Methanococcus jannaschii and other archaea, and so on.
Probab=99.29 E-value=4.9e-10 Score=99.32 Aligned_cols=230 Identities=12% Similarity=0.104 Sum_probs=137.8
Q ss_pred CCCCCCceeecC---CCHHHHHHHHhcCCCEEEEEEccccCC--CC--cccCChHHHHHHHHHHHhcCCEEEEeccccCc
Q psy6547 14 GPHMPGYNIIPY---NDVDALEAKLKSNPNICAFMVEPIQGE--AG--AVVPDDGYLKKVRALCSQYNVLFIADEVQTGL 86 (266)
Q Consensus 14 ~~~~~~v~~~~~---~d~~~l~~~l~~~~~~~~i~~~~~~~~--~g--~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~ 86 (266)
...+.+++++++ .+++++++++ +++++++++++..|. .| ... ++++|+++|++||+++++|.+..-+
T Consensus 184 ~~~G~~~~~v~~~~~~~l~dle~aI--~~~T~lv~~~h~sN~~~~G~~~~~----dl~~I~~la~~~g~~vivD~~sG~l 257 (454)
T TIGR00474 184 EQSGAKLVEVGTTNRTHLKDYEDAI--TENTALLLKVHTSNYRIVGFTEEV----SIAELVALGREHGLPVMEDLGSGSL 257 (454)
T ss_pred HHcCCEEEEeCCCCCCCHHHHHHhc--CcCCEEEEEEccCcccccCCCCCC----CHHHHHHHHHHcCCeEEEECCCccc
Confidence 345778888876 4689999999 567899888877554 34 244 8999999999999999999764222
Q ss_pred CCcC------cccccccCCCCcCeeeec--ccccCCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHh
Q psy6547 87 GRTG------KLLAIHYEDVRPDIVILG--KALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVIL 158 (266)
Q Consensus 87 ~~~g------~~~~~~~~~~~~d~~~~s--K~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~ 158 (266)
+..+ .+...+......|++++| |+++|+ . .|++++++++++.++.......+...-+..++..+++..+.
T Consensus 258 ~~~~~~gl~~~p~~~~~~~~GaDiv~fSg~K~LgGp-~-~G~i~g~~~~i~~l~~~~l~r~lr~~k~~la~l~~~l~~~~ 335 (454)
T TIGR00474 258 VDLSRYGLPDEPTVQEVIAAGVDLVTFSGDKLLGGP-Q-AGIIVGKKELIERLKKNPLTRALRVDKLTLAALEATLRLYL 335 (454)
T ss_pred ccchhccCCCCcccccHhHcCCCEEEecCccccCCC-e-EEEEEECHHHHHhhhhchhHHHHhhChHHHHHHHHHHHHHh
Confidence 2111 111122233467899888 999876 3 78899998888776643332223333334445555554432
Q ss_pred hcc--H------------HHHHHHHHHHHHHHhhccccc----CCCccc-EEecC----ccceeeEEEEeeCccchHHHH
Q psy6547 159 EEN--M------------IENAYKMGEIFRSELSSPANK----SKASFK-LSSGG----LKKSINTLILSVSAILEVYDV 215 (266)
Q Consensus 159 ~~~--~------------~~~~~~~~~~l~~~l~~~~~~----~~~~~~-~~~~g----~~~~~~~~~~~~~~~~~~~~~ 215 (266)
... + .++..+++..+.+.|++.++. ...... .-|.| .+.|-+.+.+... +.++.++
T Consensus 336 ~~~~a~~~~~~l~~l~~~~~~~~~~A~~la~~L~~~~~~~~~~~~~~~~~~~ggg~~p~~~l~~~~v~~~~~-~~~~~~l 414 (454)
T TIGR00474 336 DPEKALEKIPTLRMLTQSPEELRARAERLAKRLKAALGPGFELEIVPGLSQVGGGSLPDERLPSYAVTLTPD-GLSAEKL 414 (454)
T ss_pred CchhhhhhchHHHHhccCHHHHHHHHHHHHHHHHhhccCCceEEEEEcCCcccCCCCcCCCCCeEEEEEecC-CCCHHHH
Confidence 211 1 124455666666666652110 011110 01112 1124455555432 4568899
Q ss_pred HHHHHHCC--ceeccCCCCEEEEeccCCCCHHHHHHHHHHH
Q psy6547 216 CIKMKDAG--LVTKPISNNIIRLSPALNITEQELREGLDII 254 (266)
Q Consensus 216 ~~~l~~~g--i~~~~~~~~~iR~~~~~~~t~~~i~~~~~~l 254 (266)
.++|++.. |+.+.. .+.+.+-+. +..++|++.++++|
T Consensus 415 ~~~lr~~~~~ii~r~~-~~~~~ld~r-~~~~~~~~~~~~~~ 453 (454)
T TIGR00474 415 EARLRELPPPIIGRIE-DDRFLLDLR-TLLEDEEELLIEAL 453 (454)
T ss_pred HHHHhcCCCCEEEEEE-CCEEEEEeC-cCCHHHHHHHHHHh
Confidence 99998765 666543 666666654 45778888888776
No 333
>PLN02880 tyrosine decarboxylase
Probab=99.29 E-value=2.1e-10 Score=102.93 Aligned_cols=225 Identities=11% Similarity=0.082 Sum_probs=138.0
Q ss_pred CHHHHHHHHhcC---C-CEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCcccccccCCC-C
Q psy6547 27 DVDALEAKLKSN---P-NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDV-R 101 (266)
Q Consensus 27 d~~~l~~~l~~~---~-~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~~~~~~~~-~ 101 (266)
|+++|++.|+++ . .+.+|+.+-...++|.+- ++++|+++|++||++++||.+|.|+......+.....|+ .
T Consensus 222 d~~~L~~~i~~~~~~g~~p~~vvataGTT~~GaiD----pl~eI~~i~~~~~iwlHVDaA~gg~~~~~~~~~~~l~gie~ 297 (490)
T PLN02880 222 APELLSEAISTDLSSGLIPFFLCATVGTTSSTAVD----PLLELGKIAKSNGMWFHVDAAYAGSACICPEYRHYIDGVEE 297 (490)
T ss_pred CHHHHHHHHHHHHHCCCccEEEEEecCCCcCcccC----cHHHHHHHHHHcCCEEEEehhhHHHHHhCHHHHHHhcCchh
Confidence 799999999652 1 345555555566667764 999999999999999999999976422211111122343 4
Q ss_pred cCeee--ecccccCCchhhhhheecHH--hhhccCCC---C-C----------CCCC---CCcHHHHHHHHHHHHHHhhc
Q psy6547 102 PDIVI--LGKALSGGLYPISAVLADDE--VMGTLVPG---T-H----------GSTY---GGNPLACKLAMTALDVILEE 160 (266)
Q Consensus 102 ~d~~~--~sK~~~~g~~~~g~~~~~~~--~~~~~~~~---~-~----------~~~~---~~~~~~~~a~~~~l~~~~~~ 160 (266)
+|-++ ..|++..+ +..|+++.+.. +.+.+... . . ...+ .+.+........+++.++.+
T Consensus 298 aDSit~d~HKwl~~P-~~~g~llvr~~~~l~~~~~~~~~Yl~~~~~~~~~~~~~~~~~i~~~rr~~alklw~~l~~~G~~ 376 (490)
T PLN02880 298 ADSFNMNAHKWFLTN-FDCSLLWVKDRNALIQSLSTNPEFLKNKASQANSVVDYKDWQIPLGRRFRSLKLWMVLRLYGVE 376 (490)
T ss_pred cCEEEECchhhcCCC-ccEEEEEEeCHHHHHHHHccCHHHhcCccccccCCCChhccCcCCCCcccHHHHHHHHHHhCHH
Confidence 55555 78999977 77887776532 21222110 0 0 0000 12222344455567777777
Q ss_pred cHHHHHH---HHHHHHHHHhhccccc-CCCcccEEecCccceeeEEEEeeCcc--c----hHHHHHHHHHHCCce-ecc-
Q psy6547 161 NMIENAY---KMGEIFRSELSSPANK-SKASFKLSSGGLKKSINTLILSVSAI--L----EVYDVCIKMKDAGLV-TKP- 228 (266)
Q Consensus 161 ~~~~~~~---~~~~~l~~~l~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~--~----~~~~~~~~l~~~gi~-~~~- 228 (266)
++.+++. ++++++.+.+++ ... ..+. +.... ++.|.++.... . -..++.++|.+.|-+ +..
T Consensus 377 g~~~~i~~~~~lA~~~~~~l~~-~~~~el~~---~~~~~---iv~Fr~~~~~~~~~~~~~~n~~l~~~l~~~g~~~v~~t 449 (490)
T PLN02880 377 NLQSYIRNHIKLAKEFEQLVAQ-DSRFEVVT---PRIFS---LVCFRLVPPKNNEDNGNKLNHDLLDAVNSSGKIFISHT 449 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc-CCCEEEec---CCceE---EEEEEEeCCCCChhhHHHHHHHHHHHHHhCCCEEEEEE
Confidence 7777777 899999988877 322 1111 11122 67777653110 0 124566777666444 332
Q ss_pred --CCCCEEEEeccCCCC-HHHHHHHHHHHHHHHHHHhh
Q psy6547 229 --ISNNIIRLSPALNIT-EQELREGLDIIINTINTMAA 263 (266)
Q Consensus 229 --~~~~~iR~~~~~~~t-~~~i~~~~~~l~~~~~~~~~ 263 (266)
.+..++|+++....| ++|++.+++.|.+..+++..
T Consensus 450 ~~~g~~~lR~~~~n~~tt~~di~~~~~~i~~~~~~~~~ 487 (490)
T PLN02880 450 VLSGKYVLRFAVGAPLTEERHVTAAWKVLQDEASKLLG 487 (490)
T ss_pred EECCEEEEEEEecCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 256799999865555 69999999999998887654
No 334
>TIGR03531 selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium transferase. In the archaea and eukaryotes, the conversion of the mischarged serine to selenocysteine (Sec) on its tRNA is accomplished in two steps. This enzyme, O-phosphoseryl-tRNA(Sec) selenium transferase, acts second, after a phosphophorylation step catalyzed by a homolog of the bacterial SelA protein.
Probab=99.29 E-value=1.7e-10 Score=101.62 Aligned_cols=219 Identities=12% Similarity=0.119 Sum_probs=123.8
Q ss_pred CHHHHHHHHhcC--CCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCcccccccCCC-CcC
Q psy6547 27 DVDALEAKLKSN--PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDV-RPD 103 (266)
Q Consensus 27 d~~~l~~~l~~~--~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~~~~~~~~-~~d 103 (266)
|+++|+++|... +.+.+++.+|....+ ...+++++|.++|++||+++|+|++|......-..+....... ..|
T Consensus 190 D~e~Le~aIt~~~~kai~~Vv~Tp~t~~~----g~~ddL~eIa~la~k~gI~lIvDaAyg~~~~~~~~~~~~g~~~Grad 265 (444)
T TIGR03531 190 DVEDIERAIEEIGPDNILCVLSTTSCFAP----RSPDDIEEIAKICANYDIPHIVNNAYGLQSNKYMELINKAIKVGRVD 265 (444)
T ss_pred CHHHHHHHHHhccCCCEEEEEEcCCcCCC----cchhCHHHHHHHHHHcCCEEEEECcCcCcChhhhhhhhccccccCCC
Confidence 899999999642 233334334332222 3456999999999999999999999953211100010011111 234
Q ss_pred eee--ecccccC-Cchhhhhhee-cHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHhh---ccHHHHHHHHHHHHHHH
Q psy6547 104 IVI--LGKALSG-GLYPISAVLA-DDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILE---ENMIENAYKMGEIFRSE 176 (266)
Q Consensus 104 ~~~--~sK~~~~-g~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~---~~~~~~~~~~~~~l~~~ 176 (266)
.++ ++|.+.. | + .|.++. ++++.+.+........ .+...+.+....+. +.. +++.++..++++++.+.
T Consensus 266 ~vv~s~hK~l~~pg-~-Gg~I~~~d~el~~~i~~~y~g~~--~~s~~~~~~~~ll~-~G~~g~~~li~~~~~~a~~l~~~ 340 (444)
T TIGR03531 266 AVVSSTDKNFMVPV-G-GAIIYSFDENFIQEISKSYPGRA--SASPSLDVLITLLS-LGSKGYLELLKERKEMYKYLKEL 340 (444)
T ss_pred eEEEeCccCCCCCC-C-EEEEEECCHHHHHHHHHhccCCC--CChHHHHHHHHHHH-hCHHHHHHHHHHHHHHHHHHHHH
Confidence 444 7799884 4 2 444545 6677766654222211 22234444433333 222 45777788889999999
Q ss_pred hhccccc-CCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCce----eccCC--------------------C
Q psy6547 177 LSSPANK-SKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLV----TKPIS--------------------N 231 (266)
Q Consensus 177 l~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~----~~~~~--------------------~ 231 (266)
|.+ +.. .+... .....++. -+.+.+....+.+...+...|..++|- +.++. .
T Consensus 341 L~~-l~~~~~~~~-~~~~~n~i-s~~~~~~~~~~~~~~~~g~~l~~~~v~g~r~v~~~~~~~~~~~~~~~~~~~~~~~~~ 417 (444)
T TIGR03531 341 LQK-LAERHGERL-LDTPENPI-SSAMTLSTLKGKDPTMLGSMLYSRRVTGPRVVTNGDSKTVGGCEFKGYGSHTSNYPC 417 (444)
T ss_pred HHH-HHHhhCcEe-ecCCCCce-eEEEecccccccCHHHHHHHHHhCCCCCceeecCCCceEECCEEeecccccccCCCc
Confidence 988 542 22211 11111200 123333311133577788888888773 22221 1
Q ss_pred CEEEEeccCCCCHHHHHHHHHHHHHH
Q psy6547 232 NIIRLSPALNITEQELREGLDIIINT 257 (266)
Q Consensus 232 ~~iR~~~~~~~t~~~i~~~~~~l~~~ 257 (266)
.++-++.....+++|+|.++++|++.
T Consensus 418 ~y~~~~~~~g~~~~~~~~~~~~l~~~ 443 (444)
T TIGR03531 418 PYITAAAAIGMTKEDVDTFVSRLEKS 443 (444)
T ss_pred hhHHHHHHhCCcHHHHHHHHHHHhhc
Confidence 25666667889999999999999875
No 335
>PRK07812 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=99.28 E-value=4.4e-11 Score=105.74 Aligned_cols=87 Identities=20% Similarity=0.166 Sum_probs=66.7
Q ss_pred CCCCceeec-CCCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCcccc
Q psy6547 16 HMPGYNIIP-YNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLA 94 (266)
Q Consensus 16 ~~~~v~~~~-~~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~~ 94 (266)
++.+++.++ ..|++++++++ .+++++|+++.+.|+.|.+. ++++|.++|+++|+++|+|+++.. +.... .
T Consensus 132 ~Gi~v~~vdd~~d~e~l~~ai--~~~tklV~ie~~sNp~G~v~----Dl~~I~~la~~~gi~liVD~t~a~-~~~~~--p 202 (436)
T PRK07812 132 LGIEVSFVEDPDDLDAWRAAV--RPNTKAFFAETISNPQIDVL----DIPGVAEVAHEAGVPLIVDNTIAT-PYLIR--P 202 (436)
T ss_pred CeEEEEEECCCCCHHHHHHhC--CCCCeEEEEECCCCCCCeec----CHHHHHHHHHHcCCEEEEECCCcc-cccCC--c
Confidence 566777775 45889999888 45789999999999999998 999999999999999999999842 11111 1
Q ss_pred cccCCCCcCeeeeccccc
Q psy6547 95 IHYEDVRPDIVILGKALS 112 (266)
Q Consensus 95 ~~~~~~~~d~~~~sK~~~ 112 (266)
. .+|.+..+.+++|.++
T Consensus 203 l-~~GaDivv~S~tK~lg 219 (436)
T PRK07812 203 L-EHGADIVVHSATKYLG 219 (436)
T ss_pred h-hcCCCEEEEecccccC
Confidence 1 2355555566889998
No 336
>PF01041 DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransferase family; InterPro: IPR000653 This entry represents a family that are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions. The family includes StsA P72454 from SWISSPROT, StsC P77952 from SWISSPROT and StsS []. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase 2.6.1.50 from EC, which catalyses the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin [].; PDB: 2FNI_A 2FNU_A 2FN6_A 2PO3_A 3UWC_A 1O61_B 1O62_B 1O69_B 1B9I_A 1B9H_A ....
Probab=99.27 E-value=9.4e-10 Score=95.64 Aligned_cols=208 Identities=19% Similarity=0.252 Sum_probs=129.4
Q ss_pred CHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCcccccccCCCCcCeee
Q psy6547 27 DVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVI 106 (266)
Q Consensus 27 d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~~~~~~~~~~d~~~ 106 (266)
|++++++++ .+++++|++.+..+. .. ++++|.++|+++|++||.|.+|+ + |..+.-...|-.-|+.+
T Consensus 102 d~~~~~~~i--~~~t~ai~~~h~~G~---~~----d~~~i~~~~~~~~i~lIeD~a~a-~---g~~~~g~~~G~~gd~~~ 168 (363)
T PF01041_consen 102 DPEALEKAI--TPKTKAILVVHLFGN---PA----DMDAIRAIARKHGIPLIEDAAQA-F---GARYKGRPVGSFGDIAI 168 (363)
T ss_dssp -HHHHHHHH--HTTEEEEEEE-GGGB----------HHHHHHHHHHTT-EEEEE-TTT-T---T-EETTEETTSSSSEEE
T ss_pred CHHHHHHHh--ccCccEEEEecCCCC---cc----cHHHHHHHHHHcCCcEEEccccc-c---CceeCCEeccCCCCceE
Confidence 799999999 557899999887753 22 89999999999999999999995 2 22111122344457777
Q ss_pred ec----ccccCCchhhhhheecH-HhhhccCC---C-------------C-CCCCCCCcHHHHHHHHHHHHHHhhccHHH
Q psy6547 107 LG----KALSGGLYPISAVLADD-EVMGTLVP---G-------------T-HGSTYGGNPLACKLAMTALDVILEENMIE 164 (266)
Q Consensus 107 ~s----K~~~~g~~~~g~~~~~~-~~~~~~~~---~-------------~-~~~~~~~~~~~~~a~~~~l~~~~~~~~~~ 164 (266)
|| |.+++| -.|+++.+. ++.+.++. . . .+..+..+.+.++.+...|+.+ +...+
T Consensus 169 fSf~~~K~i~~g--eGG~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~n~rm~~~~AAigl~QL~~L--~~~~~ 244 (363)
T PF01041_consen 169 FSFHPTKIITTG--EGGAVVTNDPELAERARALRNHGRSRDAFRRYRHELPPGYNFRMSELQAAIGLAQLKRL--DEIIA 244 (363)
T ss_dssp EESSTTSSS-SS--S-EEEEESTHHHHHHHHHHTBTTEETSECSTTEESSSS--B-B-BHHHHHHHHHHHHTH--HHHHH
T ss_pred ecCCCCCCCcCC--CCeeEEecHHHHHHHhhhhhccCcCccccccccccccCCcccccHHHHHHHHHHHHHHh--hhhHH
Confidence 66 999855 256677654 44444321 1 0 2345567777777777766544 44567
Q ss_pred HHHHHHHHHHHHhhcccccC---CCcccEE-ecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccCC----------
Q psy6547 165 NAYKMGEIFRSELSSPANKS---KASFKLS-SGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPIS---------- 230 (266)
Q Consensus 165 ~~~~~~~~l~~~l~~~~~~~---~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~---------- 230 (266)
+.+++.+.+++.|.. .... ....... .... .+.+.+++....+.+++.+.|.++||.+.+..
T Consensus 245 ~R~~~a~~y~~~L~~-~~~~~~~~~~~~~~~~~~~---~f~i~~~~~~~~~rd~l~~~L~~~GI~~~~~~~~pl~~~~~~ 320 (363)
T PF01041_consen 245 RRRENAQRYREALAG-IPGIKPPPIPDGAERSSYY---RFPIRLPDEALADRDELVEALRARGIETRPHYPKPLHRQPVY 320 (363)
T ss_dssp HHHHHHHHHHHHHTT-GTTEEEEGCGTTTEEBCES---SEEEEETCCGCSTHHHHHHHHHHTTBEEBCSTSSCGGGSGGG
T ss_pred HHHHHHHHHHHHHhc-CCCcccccccccccccccc---cccccccccccchHHHHHHHHHHCCCcccccccCchhhhHHH
Confidence 777888889899888 5421 1111011 2222 34555554211357889999999999887531
Q ss_pred ------------------CCEEEEeccCCCCHHHHHHHHHHHH
Q psy6547 231 ------------------NNIIRLSPALNITEQELREGLDIII 255 (266)
Q Consensus 231 ------------------~~~iR~~~~~~~t~~~i~~~~~~l~ 255 (266)
...+.+-.+...++++++++++.|+
T Consensus 321 ~~~~~~~~~~~P~ae~l~~r~l~LP~~~~lt~edv~~I~~~ir 363 (363)
T PF01041_consen 321 RSYPYYAPGDLPNAERLSQRLLSLPIHPRLTEEDVDYIAEAIR 363 (363)
T ss_dssp TTGEEEETSSSHHHHHHHHHEEEEEHSTTSCHHHHHHHHHHHH
T ss_pred HhcCccccCCCHHHHHHHhCeEECcCCCCCCHHHHHHHhhccC
Confidence 1446677778899999999998875
No 337
>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=99.26 E-value=7.1e-11 Score=101.72 Aligned_cols=224 Identities=16% Similarity=0.118 Sum_probs=132.4
Q ss_pred cCCCCCCceeecCCCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCcc
Q psy6547 13 FGPHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKL 92 (266)
Q Consensus 13 ~~~~~~~v~~~~~~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~ 92 (266)
++-++.++..++..+.+++++.+.+ +++++|++|++.|+.--+. ++++|+++|+++|+.+|+|+++.. +
T Consensus 123 l~~~gi~~~~~d~~~~~~~~~~~~~-~~tk~v~lEtPsNP~l~v~----DI~~i~~~A~~~g~~vvVDNTfat------P 191 (396)
T COG0626 123 LQKFGVEVTFVDPGDDEALEAAIKE-PNTKLVFLETPSNPLLEVP----DIPAIARLAKAYGALVVVDNTFAT------P 191 (396)
T ss_pred HHhcCeEEEEECCCChHHHHHHhcc-cCceEEEEeCCCCcccccc----cHHHHHHHHHhcCCEEEEECCccc------c
Confidence 3457888888888788788877733 5899999999999887777 999999999999999999999942 1
Q ss_pred cccccC--CCCcCeeeecccccCCchh--hhhheecH-HhhhccCC-CCCCCCCCCcHHHHHHHHHHHHHHhhccHHHHH
Q psy6547 93 LAIHYE--DVRPDIVILGKALSGGLYP--ISAVLADD-EVMGTLVP-GTHGSTYGGNPLACKLAMTALDVILEENMIENA 166 (266)
Q Consensus 93 ~~~~~~--~~~~d~~~~sK~~~~g~~~--~g~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~ 166 (266)
..++.+ |.+..+.+.+|.++|. -- .|.++++. ++.+.+.. .....-...+|..+-..+..|+-+.- ..++.
T Consensus 192 ~~q~PL~~GaDIVvhSaTKyl~GH-sDvl~G~v~~~~~~~~~~~~~~~~~~~G~~l~p~dA~l~lRGlkTL~~--Rm~~~ 268 (396)
T COG0626 192 VLQRPLELGADIVVHSATKYLGGH-SDVLGGVVLTPNEELYELLFFAQRANTGAVLSPFDAWLLLRGLRTLAL--RMERH 268 (396)
T ss_pred cccChhhcCCCEEEEeccccccCC-cceeeeEEecChHHHHHHHHHHHHhhcCCCCCHHHHHHHHhccchHHH--HHHHH
Confidence 122333 4444445588999964 22 34455444 44444311 11112222445555444444433211 22333
Q ss_pred HHHHHHHHHHhhcccc------cCCCcc---------cEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceec----
Q psy6547 167 YKMGEIFRSELSSPAN------KSKASF---------KLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTK---- 227 (266)
Q Consensus 167 ~~~~~~l~~~l~~~~~------~~~~~~---------~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~---- 227 (266)
.+++..+.+.|++ -+ .+..+. ...+.|. +++|++.. +.+..+|.+.|.--.+..+
T Consensus 269 ~~nA~~IA~~L~~-~p~V~~V~yPgl~shp~he~~~rq~~g~gg---~~Sf~l~~--~~~~~~f~~~L~l~~~a~SlGgv 342 (396)
T COG0626 269 NENALKIAEFLAD-HPKVKKVYYPGLPSHPGHELAKRQMTGYGG---LFSFELKN--EEAAKKFLDSLKLFKLAESLGGV 342 (396)
T ss_pred HHHHHHHHHHHhc-CCCeEEEECCCCCCCCcHHHHHHhcCCCce---EEEEEeCC--hHHHHHHHHhCCccEEeccCCCc
Confidence 3344444444443 11 122111 0124567 99999988 4345666666653222111
Q ss_pred ------cC-----------------CCCEEEEeccCCCCHHHHHHHHHHHHHHHHH
Q psy6547 228 ------PI-----------------SNNIIRLSPALNITEQELREGLDIIINTINT 260 (266)
Q Consensus 228 ------~~-----------------~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~ 260 (266)
|. ..+.+|+|..+. +++.+++.|+.+++.
T Consensus 343 eSLi~~pa~~th~~~~~~~r~~~Gi~~~LvRlSVGlE----d~eDLi~Dl~~Al~~ 394 (396)
T COG0626 343 ESLISHPATMTHASIPLEERAKAGITDGLVRLSVGLE----DVEDLIADLEQALAK 394 (396)
T ss_pred ccccccccccCcccCCHhHHHhcCCCCCeEEEEecCC----CHHHHHHHHHHHHHh
Confidence 10 247899995544 566677777777665
No 338
>PRK15029 arginine decarboxylase; Provisional
Probab=99.26 E-value=8.3e-10 Score=102.57 Aligned_cols=224 Identities=13% Similarity=0.076 Sum_probs=142.2
Q ss_pred CHHHHHHHHhcCCCEE--------EEE-EccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCccccc-c
Q psy6547 27 DVDALEAKLKSNPNIC--------AFM-VEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAI-H 96 (266)
Q Consensus 27 d~~~l~~~l~~~~~~~--------~i~-~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~~~-~ 96 (266)
+++.+++.+++++..+ +++ ++|.+ .|.+. ++++|+++|+++|++|++||+|.+....+..+.. .
T Consensus 291 ~~e~i~~~l~~~p~~k~~~~~~~~avvlt~PTY--~Gv~~----di~~I~~~~h~~~~~llvDEAhGah~~F~~~~p~~s 364 (755)
T PRK15029 291 QPETLQKKISESPLTKDKAGQKPSYCVVTNCTY--DGVCY----NAKEAQDLLEKTSDRLHFDEAWYGYARFNPIYADHY 364 (755)
T ss_pred CHHHHHHHHHhCchhhhccccCceEEEEECCCC--cceee----CHHHHHHHHHhcCCeEEEECccccccccCccccccc
Confidence 4899999998876554 444 55555 67776 9999999999999999999999664333433331 2
Q ss_pred cC-----C-CCcC-eee--ecccccCCchhhhhheecHH--hh--hccCC-CCCCCCCCCcHHHHHHHHHHHHHHhh---
Q psy6547 97 YE-----D-VRPD-IVI--LGKALSGGLYPISAVLADDE--VM--GTLVP-GTHGSTYGGNPLACKLAMTALDVILE--- 159 (266)
Q Consensus 97 ~~-----~-~~~d-~~~--~sK~~~~g~~~~g~~~~~~~--~~--~~~~~-~~~~~~~~~~~~~~~a~~~~l~~~~~--- 159 (266)
.. . ..+| +++ ..|.+++= -..+++..+.. .+ +.++. ....+|.++|.+.++....+.+.++.
T Consensus 365 a~~~~~~~~~Gad~~vvqStHKtL~al-TQaS~LHv~~~~~~id~~r~~~~l~~~qSTSPSY~LmASLD~ar~~m~~~~G 443 (755)
T PRK15029 365 AMRGEPGDHNGPTVFATHSTHKLLNAL-SQASYIHVREGRGAINFSRFNQAYMMHATTSPLYAICASNDVAVSMMDGNSG 443 (755)
T ss_pred cccccccccCCCceEEEEchhhcccch-hhhhhheeCCCccccCHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhhhhh
Confidence 11 1 3566 555 66988752 23344544222 11 11221 23556667888888888888887764
Q ss_pred ccHHHHHHHHHHHHHHHhhcccccC---------------CCc-----------------------ccEEe-----cCcc
Q psy6547 160 ENMIENAYKMGEIFRSELSSPANKS---------------KAS-----------------------FKLSS-----GGLK 196 (266)
Q Consensus 160 ~~~~~~~~~~~~~l~~~l~~~~~~~---------------~~~-----------------------~~~~~-----~g~~ 196 (266)
+.++++..+....+++.+.+ +... .+. ....+ .|.+
T Consensus 444 ~~l~~~~i~~~~~~r~~l~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 522 (755)
T PRK15029 444 LSLTQEVIDEAVDFRQAMAR-LYKEFTADGSWFFKPWNKEVVTDPQTGKTYDFADAPTKLLTTVQDCWVMHPGESWHGFK 522 (755)
T ss_pred HHHHHHHHHHHHHHHHHHHh-ccccccccccccccccCccccccccccccccccccchhhhccccceeeecccccccCcc
Confidence 34677778888888888866 3210 000 00000 0000
Q ss_pred ---------ce-eeEEEEeeCccch---------HHHHHHHHHHCCceeccCCCCEEEEeccCCCCHHHHHHHHHHHHHH
Q psy6547 197 ---------KS-INTLILSVSAILE---------VYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINT 257 (266)
Q Consensus 197 ---------~~-~~~~~~~~~~~~~---------~~~~~~~l~~~gi~~~~~~~~~iR~~~~~~~t~~~i~~~~~~l~~~ 257 (266)
-| =+.+.++.. +.+ +..+.+.|.++||.+.-.+...+-+-++...+++++++++++|.++
T Consensus 523 ~~~~~~~~lDp~Klti~~~~~-g~sG~~~~~gip~~~l~~~L~~~gI~~E~~~~~~vL~l~s~g~t~~~~~~L~~aL~~~ 601 (755)
T PRK15029 523 DLPDNWSMLDPIKVSILAPGM-GEDGELEETGVPAALVTAWLGRHGIVPTRTTDFQIMFLFSMGVTRGKWGTLVNTLCSF 601 (755)
T ss_pred cccccccccCCceEEEEcCCC-CCCCcccccCCcHHHHHHHHHHcCCEEEecCCCeEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 00 122222111 222 3378999989999999888888888888899999999999999877
Q ss_pred HH
Q psy6547 258 IN 259 (266)
Q Consensus 258 ~~ 259 (266)
.+
T Consensus 602 ~~ 603 (755)
T PRK15029 602 KR 603 (755)
T ss_pred HH
Confidence 44
No 339
>COG1448 TyrB Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]
Probab=99.24 E-value=1.1e-10 Score=97.81 Aligned_cols=237 Identities=18% Similarity=0.215 Sum_probs=153.7
Q ss_pred CCccCCcCcccccCCCCCCceeecCC-------CHHHHHHHHhcCC-CEEEEEEccccCCCCcccCChHHHHHHHHHHHh
Q psy6547 1 MLITTDPTSYNEFGPHMPGYNIIPYN-------DVDALEAKLKSNP-NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQ 72 (266)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~v~~~~~~-------d~~~l~~~l~~~~-~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~ 72 (266)
+|..+||+-...|...+.+|...||- |.+.+-+.|++-+ +..+++-...|||+|.- ++.+.+++|.++.++
T Consensus 125 is~PtW~NH~~If~~aGl~v~~Y~Yyd~~~~~~df~~mla~L~~a~~~~vvLLH~CcHNPTG~D-~t~~qW~~l~~~~~~ 203 (396)
T COG1448 125 ISDPTWPNHKAIFEAAGLEVETYPYYDAETKGLDFDGMLADLKTAPEGSVVLLHGCCHNPTGID-PTEEQWQELADLIKE 203 (396)
T ss_pred eCCCCcHhHHHHHHhcCCceeeeeccccccccccHHHHHHHHHhCCCCCEEEEecCCCCCCCCC-CCHHHHHHHHHHHHH
Confidence 46677777778899999999999975 4566666665544 44455555579999977 999999999999999
Q ss_pred cCCEEEEeccccCcCCcCcccccccCC------CCcCee---eeccccc-CCchhhhhhe--e-cHHhhhccCCC---CC
Q psy6547 73 YNVLFIADEVQTGLGRTGKLLAIHYED------VRPDIV---ILGKALS-GGLYPISAVL--A-DDEVMGTLVPG---TH 136 (266)
Q Consensus 73 ~g~~li~De~~~~~~~~g~~~~~~~~~------~~~d~~---~~sK~~~-~g~~~~g~~~--~-~~~~~~~~~~~---~~ 136 (266)
.|.+-++|=+|-||+.. ...+.++ ..+.+. ++||.|+ =| -|+|+.. + +++..+.+... ..
T Consensus 204 r~lip~~D~AYQGF~~G---leeDa~~lR~~a~~~~~~lva~S~SKnfgLYg-ERVGa~~vva~~~~~a~~v~sqlk~~i 279 (396)
T COG1448 204 RGLIPFFDIAYQGFADG---LEEDAYALRLFAEVGPELLVASSFSKNFGLYG-ERVGALSVVAEDAEEADRVLSQLKAII 279 (396)
T ss_pred cCCeeeeehhhhhhccc---hHHHHHHHHHHHHhCCcEEEEehhhhhhhhhh-hccceeEEEeCCHHHHHHHHHHHHHHH
Confidence 99999999999888532 2222222 123232 2999999 56 7888743 2 33333333211 12
Q ss_pred CCCCCCcH-HHHHHHHHHHHH------Hhh--ccHHHHHHHHHHHHHHHhhccccc-CCCcccEEecCccceeeEEEEee
Q psy6547 137 GSTYGGNP-LACKLAMTALDV------ILE--ENMIENAYKMGEIFRSELSSPANK-SKASFKLSSGGLKKSINTLILSV 206 (266)
Q Consensus 137 ~~~~~~~~-~~~~a~~~~l~~------~~~--~~~~~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~ 206 (266)
.++|+..| -++..+...|+. |+. +++++++.+.+..+.+.|+. .+. ..+..-....|+ |.+.
T Consensus 280 R~~ySnPP~~Ga~vva~IL~~p~Lra~W~~El~~Mr~Ri~~mR~~lv~~L~~-~~~~~~f~~i~~Q~GM----Fsy~--- 351 (396)
T COG1448 280 RTNYSNPPAHGAAVVATILNNPELRAEWEQELEEMRQRILEMRQALVDALKA-LGAPRNFDFIISQRGM----FSYT--- 351 (396)
T ss_pred HhccCCCchhhHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hCCCcccchHhhcCce----eecC---
Confidence 23332222 234444444321 222 36888899999999999988 432 334431334554 4444
Q ss_pred CccchHHHHHHHHHHCCceeccCCCCEEEEeccCCCCHHHHHHHHHHHHHH
Q psy6547 207 SAILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINT 257 (266)
Q Consensus 207 ~~~~~~~~~~~~l~~~gi~~~~~~~~~iR~~~~~~~t~~~i~~~~~~l~~~ 257 (266)
+.+.+.+.....+.||++...+ |+++. ..++..++.+++.|.++
T Consensus 352 --Gls~~QV~rLree~~IY~v~sG----Ri~va-Gl~~~ni~~va~ai~~v 395 (396)
T COG1448 352 --GLSPEQVDRLREEFGIYLVASG----RINVA-GLNTSNIDYVAKAIAAV 395 (396)
T ss_pred --CCCHHHHHHHHHhccEEEecCC----eeeec-cCChhhHHHHHHHHHhh
Confidence 3455666655567899988765 77766 55888999999988765
No 340
>PLN02452 phosphoserine transaminase
Probab=99.24 E-value=5.5e-10 Score=96.57 Aligned_cols=203 Identities=11% Similarity=0.050 Sum_probs=143.5
Q ss_pred hcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCcccccccCCCCcCeeeecccccCCc
Q psy6547 36 KSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGL 115 (266)
Q Consensus 36 ~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~~~~~~~~~~d~~~~sK~~~~g~ 115 (266)
+.+++.+.+.+.++.+.+|.... +++++. ++++|+|-+.+ + .+.+..++.+++ ++.+..|++| .
T Consensus 141 ~~~~~~~~v~~~hnETstGv~~~---~~~~i~------~~~lvVDa~Ss-~--g~~pidv~~~~v--~~~saqK~lG-P- 204 (365)
T PLN02452 141 ELTPDAKFVHICANETIHGVEFK---DYPDVG------NVPLVADMSSN-F--LSKPVDVSKYGV--IYAGAQKNVG-P- 204 (365)
T ss_pred CCCCCCcEEEECCCCCCCcEecC---cccccC------CCeEEEECCcc-c--cCcccCHHHcCE--EEEecccccC-C-
Confidence 34557889999999888898421 344443 38999998885 3 234445555664 6677889997 2
Q ss_pred hhhhhheecHHhhhccCCC-----------CCCCC-CCCcHHHHHHHHHHHHHHhhc----cHHHHHHHHHHHHHHHhhc
Q psy6547 116 YPISAVLADDEVMGTLVPG-----------THGST-YGGNPLACKLAMTALDVILEE----NMIENAYKMGEIFRSELSS 179 (266)
Q Consensus 116 ~~~g~~~~~~~~~~~~~~~-----------~~~~~-~~~~~~~~~a~~~~l~~~~~~----~~~~~~~~~~~~l~~~l~~ 179 (266)
..+|+++.++++++..... ...++ ++++.....+...+|+++.++ .+.++.+++.+++++.|++
T Consensus 205 ~Gl~~v~vr~~~l~~~~~~~~~~~~~~~~~~~~s~~~TP~v~~i~~l~~aL~~l~~~gGl~~~~~r~~~~a~~l~~~l~~ 284 (365)
T PLN02452 205 SGVTIVIIRKDLIGNARPITPGMLDYKIHAENDSLYNTPPCFGIYMCGLVFEDLLAQGGLKAMEKRNIRKADLLYDAIDE 284 (365)
T ss_pred CCeEEEEEcHHHHhhcccCCCchhhHHHHHhcCCccCChhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHh
Confidence 3388899999988765432 11122 366666788888999988764 4778888899999999987
Q ss_pred cccc--CCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccCC--CCEEEEeccCCCCHHHHHHHHHHHH
Q psy6547 180 PANK--SKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPIS--NNIIRLSPALNITEQELREGLDIII 255 (266)
Q Consensus 180 ~~~~--~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~--~~~iR~~~~~~~t~~~i~~~~~~l~ 255 (266)
..+. ..... ...... .+.|.+++. ...++|.+.++++|++..++. .+.+|+++.-.++.++++++++.++
T Consensus 285 ~~G~y~~~~~~-~~rs~~---~vsF~~~~~--~~~~~f~~~~~~~g~~~~~G~r~~gg~R~s~yna~~~~~v~~L~~~m~ 358 (365)
T PLN02452 285 SNGFYVCPVEK-SVRSLM---NVPFTLGGS--ELEAEFVKEAAKAGMVQLKGHRSVGGMRASIYNAMPLAGVEKLVAFMK 358 (365)
T ss_pred CCCcccCCCCh-HHhCCe---EEEEEcCCc--hhHHHHHHHHHHCCCcccCCccccCceEEECcCCCCHHHHHHHHHHHH
Confidence 2222 11111 112334 678887763 367889999999999998863 2449999999999999999999999
Q ss_pred HHHHH
Q psy6547 256 NTINT 260 (266)
Q Consensus 256 ~~~~~ 260 (266)
++.++
T Consensus 359 ~f~~~ 363 (365)
T PLN02452 359 DFQAK 363 (365)
T ss_pred HHHHh
Confidence 88765
No 341
>KOG0053|consensus
Probab=99.22 E-value=2.1e-10 Score=97.97 Aligned_cols=127 Identities=17% Similarity=0.161 Sum_probs=88.9
Q ss_pred CCCCceeecCCCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCccccc
Q psy6547 16 HMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAI 95 (266)
Q Consensus 16 ~~~~v~~~~~~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~~~ 95 (266)
++..+.+++-.+++.++..+ .+++++|++|++.||...+. ++++|+++|+++|+++|+|++..+. ..+
T Consensus 140 ~gie~~~vd~~~~~~~~~~i--~~~t~~V~~ESPsNPll~v~----DI~~l~~la~~~g~~vvVDnTf~~p------~~~ 207 (409)
T KOG0053|consen 140 FGGEGDFVDVDDLKKILKAI--KENTKAVFLESPSNPLLKVP----DIEKLARLAHKYGFLVVVDNTFGSP------YNQ 207 (409)
T ss_pred hCceeeeechhhHHHHHHhh--ccCceEEEEECCCCCccccc----cHHHHHHHHhhCCCEEEEeCCcCcc------ccc
Confidence 45556666666777788777 44799999999999998887 9999999999999999999999533 223
Q ss_pred ccCCCCcCeee--ecccccCCc-hhhhhheec-HHhhhccCCCCCCCCCCCcHHHHHHHHHHH
Q psy6547 96 HYEDVRPDIVI--LGKALSGGL-YPISAVLAD-DEVMGTLVPGTHGSTYGGNPLACKLAMTAL 154 (266)
Q Consensus 96 ~~~~~~~d~~~--~sK~~~~g~-~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l 154 (266)
+.+.+..|+++ .+|.|+|.- .-.|.++.+ +++.+.+.......-+..+|..+......+
T Consensus 208 ~pL~lGADIV~hSaTKyi~Ghsdvi~G~iv~n~~~~~~~l~~~~~~lg~~~~p~~~~ll~Rgl 270 (409)
T KOG0053|consen 208 DPLPLGADIVVHSATKYIGGHSDVIGGSVVLNSEELASRLKFLQEDLGWCEDPFDLFLLSRGL 270 (409)
T ss_pred ChhhcCCCEEEEeeeeeecCCcceeeeEEecCcHHHHHHHHHHHHHhcCCCCHHHHHHHhcCc
Confidence 33444566666 889999541 223556664 677776665444445556666655554443
No 342
>PLN02271 serine hydroxymethyltransferase
Probab=99.21 E-value=2.4e-09 Score=95.47 Aligned_cols=213 Identities=14% Similarity=0.100 Sum_probs=137.6
Q ss_pred CHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccc-cCcCCcCcccccccCCCCcCee
Q psy6547 27 DVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQ-TGLGRTGKLLAIHYEDVRPDIV 105 (266)
Q Consensus 27 d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~-~~~~~~g~~~~~~~~~~~~d~~ 105 (266)
|.++|++.+. ..++++|++....++ ... ++++++++|+++|+++++|.+| .|+-..|.. ..... ..|++
T Consensus 286 Dyd~lek~a~-~~rPKLII~g~Sayp--r~~----D~~~i~eIAdevGA~LmvD~AH~aGLIa~g~~-~sP~~--~aDvv 355 (586)
T PLN02271 286 DYDKLEEKAL-DFRPKILICGGSSYP--REW----DYARFRQIADKCGAVLMCDMAHISGLVAAKEC-VNPFD--YCDIV 355 (586)
T ss_pred CHHHHHHHhh-hcCCeEEEECchhcc--CcC----CHHHHHHHHHHcCCEEEEECcccccccccCcC-CCCCc--CCcEE
Confidence 7899998653 347899999765443 222 8999999999999999999999 444222211 11111 35666
Q ss_pred e--ecccccCCchhhhhheecHH--------------------hhhccCCCCCCCCCCC--cHHHHHHHHHHHHHHhh--
Q psy6547 106 I--LGKALSGGLYPISAVLADDE--------------------VMGTLVPGTHGSTYGG--NPLACKLAMTALDVILE-- 159 (266)
Q Consensus 106 ~--~sK~~~~g~~~~g~~~~~~~--------------------~~~~~~~~~~~~~~~~--~~~~~~a~~~~l~~~~~-- 159 (266)
+ ..|+|.|. +.|.++.+++ +.+.+...-.- .+.+ ..-..++...+++....
T Consensus 356 t~TTHKtLrGP--rGG~I~~r~~~~~~~~g~~gs~s~~~~~~d~~~kI~~aVfP-glqgGphn~~IAalAvalkea~~~e 432 (586)
T PLN02271 356 TSTTHKSLRGP--RGGIIFYRKGPKLRKQGMLLSHGDDNSHYDFEEKINFAVFP-SLQGGPHNNHIAALAIALKQVATPE 432 (586)
T ss_pred EeCCcccCCCC--CceEEEecccccccccCCccccccccccHHHHHHhhcccCC-ccccChhHHHHHHHHHHHHHHhChH
Confidence 6 66999875 4577776653 22222211011 1111 11235555566665544
Q ss_pred -ccHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceecc----C-----
Q psy6547 160 -ENMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKP----I----- 229 (266)
Q Consensus 160 -~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~----~----- 229 (266)
.++.+++.++.+.|.+.|.+ .+...+ ..|.++.++++++... +.+.....+.|.+.||.+.. +
T Consensus 433 fk~Ya~QVv~NAkaLA~~L~~-~G~~vv-----~ggTdnHlvLvDl~~~-g~~G~~ae~~Le~~~I~~Nkn~iP~d~~~~ 505 (586)
T PLN02271 433 YKAYMQQVKKNAQALASALLR-RKCRLV-----TGGTDNHLLLWDLTTL-GLTGKNYEKVCEMCHITLNKTAIFGDNGTI 505 (586)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-CCCeEe-----eCCCCcceeeecCccc-CCCHHHHHHHHHHcCeEeccccCCCCCCCC
Confidence 35888888999999998887 443322 3455666888888552 44677777888888998852 2
Q ss_pred CCCEEEEecc----CCCCHHHHHHHHHHHHHHHH
Q psy6547 230 SNNIIRLSPA----LNITEQELREGLDIIINTIN 259 (266)
Q Consensus 230 ~~~~iR~~~~----~~~t~~~i~~~~~~l~~~~~ 259 (266)
.++.||+..+ ..+.++|++++.+.|.++++
T Consensus 506 ~psGiRiGT~alT~rG~~e~d~~~iA~~i~~~~~ 539 (586)
T PLN02271 506 SPGGVRIGTPAMTSRGCLESDFETIADFLLRAAQ 539 (586)
T ss_pred CCCcccccCHHHHhcCCCcHHHHHHHHHHHHHHh
Confidence 3467999865 46678899998888888876
No 343
>PRK05613 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=99.20 E-value=2.5e-10 Score=100.98 Aligned_cols=90 Identities=18% Similarity=0.184 Sum_probs=67.2
Q ss_pred CCCCCCceeec-CCCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCcc
Q psy6547 14 GPHMPGYNIIP-YNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKL 92 (266)
Q Consensus 14 ~~~~~~v~~~~-~~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~ 92 (266)
..++.++++++ ..|++++++.+ .+++++|+++...|+.|.+. ++++|+++|+++|+++|+|.+++. |..
T Consensus 130 ~~~Gi~v~~vd~~~d~e~l~~~l--~~~tk~V~~e~~~Np~~~v~----di~~I~~la~~~gi~livD~t~a~----g~~ 199 (437)
T PRK05613 130 NRLGIEVTFVENPDDPESWQAAV--QPNTKAFFGETFANPQADVL----DIPAVAEVAHRNQVPLIVDNTIAT----AAL 199 (437)
T ss_pred HhcCeEEEEECCCCCHHHHHHhC--CccCeEEEEECCCCCCCccc----CHHHHHHHHHHcCCeEEEECCCcc----ccc
Confidence 44577888886 45899999999 45688999988888878777 999999999999999999999842 111
Q ss_pred cccccCCCCcCeeeecccccC
Q psy6547 93 LAIHYEDVRPDIVILGKALSG 113 (266)
Q Consensus 93 ~~~~~~~~~~d~~~~sK~~~~ 113 (266)
.....+|.+.-+.++.|.++|
T Consensus 200 ~~p~~~GaDivv~S~~K~l~G 220 (437)
T PRK05613 200 VRPLELGADVVVASLTKFYTG 220 (437)
T ss_pred cChHHhCCCEEEeeccceecC
Confidence 111134554444557799985
No 344
>PLN03032 serine decarboxylase; Provisional
Probab=99.20 E-value=1.4e-09 Score=94.24 Aligned_cols=204 Identities=15% Similarity=0.056 Sum_probs=133.6
Q ss_pred CHHHHHHHHhcCC-CEEEEEEccccCCCCcccCChHHHHHHHHHHHhcC-----CEEEEeccccCc-CCc---Ccccccc
Q psy6547 27 DVDALEAKLKSNP-NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYN-----VLFIADEVQTGL-GRT---GKLLAIH 96 (266)
Q Consensus 27 d~~~l~~~l~~~~-~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g-----~~li~De~~~~~-~~~---g~~~~~~ 96 (266)
|+++|+++++++. ++.+++++..++.+|.+- ++++|+++|+++| +++.+|.++.++ ... ...+.+.
T Consensus 147 d~~~L~~~i~~~~~~~~lvv~tagtt~tG~id----pi~eI~~i~~~~g~~~~~~~lHvDaA~gg~~~p~~~~~~~~~~~ 222 (374)
T PLN03032 147 DYDDLERALAKNRDKPAILNVNIGTTVKGAVD----DLDRILRILKELGYTEDRFYIHCDGALFGLMMPFVSRAPEVTFR 222 (374)
T ss_pred cHHHHHHHHHHcCCCCEEEEEEecCcCCccCC----CHHHHHHHHHHhCCCCCCeeEEEEccchhhhhhccCCCcccCCC
Confidence 7999999996532 467777887888888885 9999999999997 489999999653 110 0111211
Q ss_pred cCCCCcCeee--ecccccCCchhhhhheecHHhhhccCCC-----CCCCCCCCcH--HHHHHHHHHHHHHhhcc---HHH
Q psy6547 97 YEDVRPDIVI--LGKALSGGLYPISAVLADDEVMGTLVPG-----THGSTYGGNP--LACKLAMTALDVILEEN---MIE 164 (266)
Q Consensus 97 ~~~~~~d~~~--~sK~~~~g~~~~g~~~~~~~~~~~~~~~-----~~~~~~~~~~--~~~~a~~~~l~~~~~~~---~~~ 164 (266)
..+|.++ ..|.++.+ .+.|.++.+++..+.+... ....+..++. ...+....+|+.+..++ ..+
T Consensus 223 ---~~vDSis~s~HK~~g~P-~g~G~ll~r~~~~~~~~~~~~Yl~~~d~ti~gSR~g~~~l~~w~~l~~~G~~g~~~~~~ 298 (374)
T PLN03032 223 ---KPIGSVSVSGHKFLGCP-MPCGVALTRKKHVKALSQNVEYLNSRDATIMGSRNGHAPLYLWYTLRRKGYRGIKRDVQ 298 (374)
T ss_pred ---cCCcEEEECcccccCCC-cCeEEEEEEchhhHhhccCCcccCCCCCcccCCCchHHHHHHHHHHHHhCHHHHHHHHH
Confidence 2356566 55888756 7788888887766544321 1112344444 34566777787777655 566
Q ss_pred HHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccCCCCEEEEeccCCCCH
Q psy6547 165 NAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITE 244 (266)
Q Consensus 165 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~iR~~~~~~~t~ 244 (266)
+..++++++.++|++ .+...+.. ...+ .+.|..+. .+. ..+|..+.+. .+.+|++++..+++
T Consensus 299 ~~~~~a~~l~~~l~~-~~~~~~~~---p~~~---~V~f~~~~-----~~~-----~~~~w~l~~~-~~~~hi~vm~~~~~ 360 (374)
T PLN03032 299 HCMRNAHYLKDRLTE-AGLTCRLN---ELSS---TVVFERPM-----DEA-----FIKKWQLACE-GDIAHVVVMPNVTV 360 (374)
T ss_pred HHHHHHHHHHHHHHh-CCCcEEEC---CCce---EEEEcCCC-----cHh-----Hhheeeeccc-CCEEEEEECCCCCH
Confidence 677888899999887 43322111 1122 44444332 111 2256666654 46899999988999
Q ss_pred HHHHHHHHHHHH
Q psy6547 245 QELREGLDIIIN 256 (266)
Q Consensus 245 ~~i~~~~~~l~~ 256 (266)
+.+|++++.|++
T Consensus 361 ~~id~fi~dl~~ 372 (374)
T PLN03032 361 EKLDEFVEELVE 372 (374)
T ss_pred HHHHHHHHHHhc
Confidence 999999998875
No 345
>COG0112 GlyA Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism]
Probab=99.17 E-value=8e-09 Score=87.20 Aligned_cols=215 Identities=19% Similarity=0.216 Sum_probs=144.9
Q ss_pred CHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccc-cCcCCcCcccccccCCCCcCee
Q psy6547 27 DVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQ-TGLGRTGKLLAIHYEDVRPDIV 105 (266)
Q Consensus 27 d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~-~~~~~~g~~~~~~~~~~~~d~~ 105 (266)
|.|+++++.++. ++++|++-...- .-.-++++++++|++-|.+|++|-+| .|+--.|.+ .... . ..|++
T Consensus 154 DyD~~~k~a~e~-kPK~ii~G~SaY------~r~id~~~~reIad~VGA~L~~DmAHiaGLVA~G~~-p~P~-~-~AdvV 223 (413)
T COG0112 154 DYDEVEKLAKEV-KPKLIIAGGSAY------SRPIDFKRFREIADEVGAYLMVDMAHVAGLIAGGVH-PNPL-P-HADVV 223 (413)
T ss_pred CHHHHHHHHHHh-CCCEEEECcccc------ccccCHHHHHHHHHHhCceEEehHHHHHHHHhcccC-CCCC-C-ccceE
Confidence 789999998665 578888764321 22339999999999999999999999 555323332 1111 1 25666
Q ss_pred e--ecccccCCchhhhhheecH-HhhhccCCCCCCCCCCCcHHH-HHHHHHHHHHHhh---ccHHHHHHHHHHHHHHHhh
Q psy6547 106 I--LGKALSGGLYPISAVLADD-EVMGTLVPGTHGSTYGGNPLA-CKLAMTALDVILE---ENMIENAYKMGEIFRSELS 178 (266)
Q Consensus 106 ~--~sK~~~~g~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~a~~~~l~~~~~---~~~~~~~~~~~~~l~~~l~ 178 (266)
+ -.|+|.|+ |.|.++++. ++.++++..-.-...++.-+. .++-..++....+ +++.+++.++++.+.+.|.
T Consensus 224 TtTTHKTlrGP--rGG~Il~~~eel~kkin~aVFPg~qggpl~HviAakaVa~~Eal~p~fk~Ya~qVv~NAkaLAe~l~ 301 (413)
T COG0112 224 TTTTHKTLRGP--RGGIILTNDEELAKKINSAVFPGLQGGPLMHVIAAKAVAFKEALEPEFKEYAKQVVKNAKALAEALK 301 (413)
T ss_pred eCCcccCCCCC--CceEEEeccHHHHHHhhhhcCCccCCChHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHH
Confidence 6 66999874 788888875 787877753233333222222 3332333333323 3588889999999999998
Q ss_pred cccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceec----c------CCCCEEEEecc----CCCCH
Q psy6547 179 SPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTK----P------ISNNIIRLSPA----LNITE 244 (266)
Q Consensus 179 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~----~------~~~~~iR~~~~----~~~t~ 244 (266)
+ .+...+ +.|.++.++.+++.+. +.+.++....|.+.||.+. | ...+.||+..+ ..+.+
T Consensus 302 ~-~G~~vv-----sGgTdnHl~lVDl~~~-~~~Gk~ae~~L~~~~It~NKN~iP~D~~~p~~tSGIRiGtpa~TtrG~~e 374 (413)
T COG0112 302 E-RGFKVV-----SGGTDNHLVLVDLRSK-GLTGKKAEAALERAGITVNKNAIPFDPESPFVTSGIRIGTPAVTTRGFGE 374 (413)
T ss_pred H-cCCeEe-----cCCccceEEEEEcccC-CCCHHHHHHHHHHcCEeeccCCCCCCCCCCCCCccceeccHHHhhcCCCH
Confidence 8 554333 3466667888888842 5567777788888899875 2 23577999765 46678
Q ss_pred HHHHHHHHHHHHHHHH
Q psy6547 245 QELREGLDIIINTINT 260 (266)
Q Consensus 245 ~~i~~~~~~l~~~~~~ 260 (266)
+++++..+.|.+++..
T Consensus 375 ~e~~~Ia~~I~~vl~~ 390 (413)
T COG0112 375 AEMEEIADLIADVLDG 390 (413)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 8899988888888765
No 346
>PLN02590 probable tyrosine decarboxylase
Probab=99.16 E-value=5e-09 Score=94.59 Aligned_cols=225 Identities=12% Similarity=0.086 Sum_probs=135.9
Q ss_pred CHHHHHHHHhcCC----CEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCcccccccCCC-C
Q psy6547 27 DVDALEAKLKSNP----NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDV-R 101 (266)
Q Consensus 27 d~~~l~~~l~~~~----~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~~~~~~~~-~ 101 (266)
|+++|++.|+++. .+.+|+.+-...++|.+ +++++|.++|++||+++.||.+|.|+......+.....|+ .
T Consensus 270 d~~~L~~~I~~d~~~g~~P~~VvaTaGTT~tGai----Dpl~~Ia~i~~~~g~WlHVDaA~GG~al~~~~~r~~~~Gie~ 345 (539)
T PLN02590 270 PPESLEEAISHDLAKGFIPFFICATVGTTSSAAV----DPLVPLGNIAKKYGIWLHVDAAYAGNACICPEYRKFIDGIEN 345 (539)
T ss_pred CHHHHHHHHHHHHhcCCCcEEEEEEeCCCCCccc----CCHHHHHHHHHHhCCeEEEecchhhhhhcChhhHHHhcCCcc
Confidence 7999999996531 34455555555556666 5999999999999999999999987532222111111233 2
Q ss_pred cCeee--ecccccCCchhhhhheecHH--hhhccCC---C--------------CCCCCCCCcHHHHHHHHHHHHHHhhc
Q psy6547 102 PDIVI--LGKALSGGLYPISAVLADDE--VMGTLVP---G--------------THGSTYGGNPLACKLAMTALDVILEE 160 (266)
Q Consensus 102 ~d~~~--~sK~~~~g~~~~g~~~~~~~--~~~~~~~---~--------------~~~~~~~~~~~~~~a~~~~l~~~~~~ 160 (266)
.|-++ ..|++..+ +..|.++.+.+ +.+.+.. + ...+.-.+-++.......+|+.+..+
T Consensus 346 ADSit~D~HK~l~~p-~~cg~llvr~~~~l~~a~~~~~~YL~~~~~~~~~~~d~~d~~i~lsRr~raLklW~~lr~~G~~ 424 (539)
T PLN02590 346 ADSFNMNAHKWLFAN-QTCSPLWVKDRYSLIDALKTNPEYLEFKVSKKDTVVNYKDWQISLSRRFRSLKLWMVLRLYGSE 424 (539)
T ss_pred CCEEEECchhhcCcC-cCEEEEEecCHHHHHHHhhcCHHHhCCcccccccCCCccccCCCCCCchHHHHHHHHHHHHHHH
Confidence 34333 77999877 77777776542 2222210 0 00011112334555666777777776
Q ss_pred cH---HHHHHHHHHHHHHHhhccccc-CCCcccEEecCccceeeEEEEeeCc--c----chHHHHHHHHHHCCceec-c-
Q psy6547 161 NM---IENAYKMGEIFRSELSSPANK-SKASFKLSSGGLKKSINTLILSVSA--I----LEVYDVCIKMKDAGLVTK-P- 228 (266)
Q Consensus 161 ~~---~~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~--~----~~~~~~~~~l~~~gi~~~-~- 228 (266)
++ .++..++++++.+.+++ .+. ..+.. +.. +++-|.+.... . .-..++.++|.+.|.... +
T Consensus 425 G~~~~i~~~~~lA~~~~~~l~~-~~~fel~~~--~~l----~iVcFr~~~~~~~~~~~~~ln~~l~~~l~~~G~~~vs~t 497 (539)
T PLN02590 425 NLRNFIRDHVNLAKHFEDYVAQ-DPSFEVVTT--RYF----SLVCFRLAPVDGDEDQCNERNRELLAAVNSTGKIFISHT 497 (539)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc-CCCeEEecC--Cce----EEEEEEecCCCCCHHHHHHHHHHHHHHHHhCCCEEEEee
Confidence 54 45556788888888877 332 11111 111 24555554310 1 113567777777766543 3
Q ss_pred --CCCCEEEEec-cCCCCHHHHHHHHHHHHHHHHHHhh
Q psy6547 229 --ISNNIIRLSP-ALNITEQELREGLDIIINTINTMAA 263 (266)
Q Consensus 229 --~~~~~iR~~~-~~~~t~~~i~~~~~~l~~~~~~~~~ 263 (266)
.+..++|++. +...++++++.+++.|.+...++..
T Consensus 498 ~~~g~~~lR~~i~n~~T~~~dv~~~~~~i~~~a~~~~~ 535 (539)
T PLN02590 498 ALSGKFVLRFAVGAPLTEEKHVTEAWQIIQKHASKFTR 535 (539)
T ss_pred EECCEEEEEEEecCCCCCHHHHHHHHHHHHHHHHHhcc
Confidence 2457899986 4567899999999999998777543
No 347
>PF01276 OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain; InterPro: IPR000310 Pyridoxal-dependent decarboxylases are bacterial proteins acting on ornithine, lysine, arginine and related substrates []. One of the regions of sequence similarity contains a conserved lysine residue, which is the site of attachment of the pyridoxal-phosphate group.; GO: 0003824 catalytic activity; PDB: 1C4K_A 1ORD_A 2X3L_B 3Q16_C 3N75_A 2VYC_D.
Probab=99.14 E-value=5.4e-10 Score=97.09 Aligned_cols=211 Identities=15% Similarity=0.140 Sum_probs=121.9
Q ss_pred CHHHHHHHHhcCCCEEE----EEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCcccccccCCCCc
Q psy6547 27 DVDALEAKLKSNPNICA----FMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRP 102 (266)
Q Consensus 27 d~~~l~~~l~~~~~~~~----i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~~~~~~~~~~ 102 (266)
+.+.+++.|++++..++ ++++|.+ .|.+. ++++|.++|+++|++|+|||+|.+..... .+.........
T Consensus 152 ~~~~i~~~l~~~p~~k~~~~vvlt~PTY--~Gv~~----di~~I~~~~h~~~~~llvDEAhGah~~F~-~lp~~a~~~ga 224 (417)
T PF01276_consen 152 NEEDIEEALKEHPDAKAPRLVVLTSPTY--YGVCY----DIKEIAEICHKHGIPLLVDEAHGAHFGFH-PLPRSALALGA 224 (417)
T ss_dssp SHHHHHHHHHHCTTCHCESEEEEESS-T--TSEEE-----HHHHHHHHCCTECEEEEE-TT-TTGGCS-GGGTTCSSTTS
T ss_pred hHHHHHHHHHhCccccCceEEEEeCCCC--CeEEE----CHHHHHHHhcccCCEEEEEccccccccCC-CCccchhhccC
Confidence 34999999998876554 4455555 67887 99999999999999999999996532333 33444455566
Q ss_pred C-------eee--ecccccCCchhhhhheecHHh-h--hccCC-CCCCCCCCCcHHHHHHHHHHHHHH-hh--ccHHHHH
Q psy6547 103 D-------IVI--LGKALSGGLYPISAVLADDEV-M--GTLVP-GTHGSTYGGNPLACKLAMTALDVI-LE--ENMIENA 166 (266)
Q Consensus 103 d-------~~~--~sK~~~~g~~~~g~~~~~~~~-~--~~~~~-~~~~~~~~~~~~~~~a~~~~l~~~-~~--~~~~~~~ 166 (266)
| +++ ..|.+++= -..+++..+... + +.++. ....+|.++|.+.++....+.+.+ .. +.++++.
T Consensus 225 d~~~~~~~~vvqS~HKtL~al-tQts~lh~~~~~~v~~~~~~~~l~~~~TTSPSY~lmASlD~a~~~m~~~~G~~l~~~~ 303 (417)
T PF01276_consen 225 DRPNDPGIIVVQSTHKTLPAL-TQTSMLHVKGDRIVDHERVNEALSMHQTTSPSYPLMASLDVARAQMEEEEGRELLEEA 303 (417)
T ss_dssp S-CTSBEEEEEEEHHHHSSS--TT-EEEEEETCCCTTHHHHHHHHHHHS-SS--HHHHHHHHHHHHHHSHHHHHHHHHHH
T ss_pred ccccccceeeeechhhccccc-ccceEEEecCCCcccHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 6 665 66988753 334455544332 1 22221 234566678888888888888887 33 3588888
Q ss_pred HHHHHHHHHHhhcc--ccc-CCC-cccEEecC-------------------c---cceeeEEEEe--------eCccchH
Q psy6547 167 YKMGEIFRSELSSP--ANK-SKA-SFKLSSGG-------------------L---KKSINTLILS--------VSAILEV 212 (266)
Q Consensus 167 ~~~~~~l~~~l~~~--~~~-~~~-~~~~~~~g-------------------~---~~~~~~~~~~--------~~~~~~~ 212 (266)
.++...+|+++++. +.. ..+ +..+.+.+ . +--=+.+.++ ...+..+
T Consensus 304 i~~a~~~R~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~whgf~~~~~~~~~lDP~K~ti~~pG~~~~g~~~~~Gi~g 383 (417)
T PF01276_consen 304 IELAEEFRKKINRLNDIWGFKVLGPEDVGGEGCWDLDPGENWHGFEGLADDYYMLDPTKLTINTPGIDADGELSELGIPG 383 (417)
T ss_dssp HHHHHHHHHHHHHHCCT-SSEESS-SEECTCCGCB--TT-TTT--TT--TTSEEE-TTEEEEE-STBETTSSB-SS---H
T ss_pred HHHHHHHHHHHHhcCCCceEecCCccccCCccccccCccccchhchhcccCccccCCcEEEEEccCcCcCCcccccCCCH
Confidence 88999999998420 211 001 11011100 0 0002334432 1125678
Q ss_pred HHHHHHHHHCCceeccCCCCEEEEeccCCCCHH
Q psy6547 213 YDVCIKMKDAGLVTKPISNNIIRLSPALNITEQ 245 (266)
Q Consensus 213 ~~~~~~l~~~gi~~~~~~~~~iR~~~~~~~t~~ 245 (266)
..+.+.|.++||.+.-.+...+-+-.+...|++
T Consensus 384 ~~~~~~L~~~~I~~Ek~d~~~vL~l~t~G~t~~ 416 (417)
T PF01276_consen 384 YIVEKYLREHGIQVEKTDLYNVLFLFTIGDTKE 416 (417)
T ss_dssp HHHHHHHHHTTEE-SEEESSEEEEE--TTS-HH
T ss_pred HHHHHHHHHcCCEEEeccCccEEEEecCCCCCC
Confidence 889999999999999877777777766666654
No 348
>COG1003 GcvP Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain [Amino acid transport and metabolism]
Probab=99.13 E-value=1.6e-08 Score=86.30 Aligned_cols=239 Identities=17% Similarity=0.164 Sum_probs=152.4
Q ss_pred cCcccccCCCCCCceeecCC-----CHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEec
Q psy6547 7 PTSYNEFGPHMPGYNIIPYN-----DVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADE 81 (266)
Q Consensus 7 ~~~~~~~~~~~~~v~~~~~~-----d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De 81 (266)
.|+..+.+..+-+||.|+.+ |+++|++.+. +++++++++.++. -|.. .+.+.+|+++.|++|..|..|.
T Consensus 168 GTNPASAam~G~~VV~V~~~~~G~VDlddLk~k~~--~~~AalMiTnPsT-~GvF---E~~I~ei~~ivH~~Gg~vY~DG 241 (496)
T COG1003 168 GTNPASAAMAGFKVVVVKCDENGNVDLDDLRAKAE--DNLAALMITNPST-LGVF---EEDIREICEIVHEAGGQVYYDG 241 (496)
T ss_pred CCChhhHhhcCceEEEEecCCCCCccHHHHHHHhc--cceeEEEeccCcc-cccc---hhhHHHHHHHHHHcCCEEEecC
Confidence 33344777788999999976 7999999994 5788888775443 3433 6789999999999999999997
Q ss_pred ccc----CcCCcCcccccccCCCCcCeee--eccccc----CCchhhhhheecHHhhhccCC----C-------------
Q psy6547 82 VQT----GLGRTGKLLAIHYEDVRPDIVI--LGKALS----GGLYPISAVLADDEVMGTLVP----G------------- 134 (266)
Q Consensus 82 ~~~----~~~~~g~~~~~~~~~~~~d~~~--~sK~~~----~g~~~~g~~~~~~~~~~~~~~----~------------- 134 (266)
+-. |..+.| .+..|++- +.|+|+ ||--..|-+...+.+...+.. .
T Consensus 242 ANlNA~vG~~rPG--------d~G~DV~HlNLHKTF~iPHGGGGPG~GPvgVk~~L~pfLP~p~~~~~~~~y~~~~~~~~ 313 (496)
T COG1003 242 ANLNAIVGLARPG--------DMGFDVVHLNLHKTFCIPHGGGGPGAGPVGVKAHLAPFLPGPVVYHDVGEYRLDYDGKK 313 (496)
T ss_pred cchhhhhcccccc--------ccccceEEeecccccccCCCCCCCCCCceehHhhccccCCCCcccCCCccccccCCCCc
Confidence 772 111222 13455544 778887 331445666666666554432 0
Q ss_pred --CCCCCCCCcHHHHHHHHHHHHHHhhccHHH---HHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEE-EeeCc
Q psy6547 135 --THGSTYGGNPLACKLAMTALDVILEENMIE---NAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLI-LSVSA 208 (266)
Q Consensus 135 --~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~---~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~ 208 (266)
.....+.+|......+++-+..+..+++.+ ...-++.|+..+|+....-...+.....+-+ ++... +....
T Consensus 314 s~g~~~a~~Gs~~il~~a~~YI~~mG~~GL~~ase~AvLNANYia~rL~~~y~~~y~~~~~~~HE~---ild~r~l~~~~ 390 (496)
T COG1003 314 SIGVSAAPYGSASILPIAWAYIRMMGADGLKQASEVAVLNANYIARRLKGYYPVPYTGENRVAHEC---ILDARPLKKET 390 (496)
T ss_pred cceeeccccCcchHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHhhhcCccccCCCCcceeEE---EeechHhHhhc
Confidence 011222345555555666666666655433 2334678888888862221111110011122 22222 11222
Q ss_pred cchHHHHHHHHHHCCceec----c-CCCCEEEEeccCCCCHHHHHHHHHHHHHHHHHHh
Q psy6547 209 ILEVYDVCIKMKDAGLVTK----P-ISNNIIRLSPALNITEQELREGLDIIINTINTMA 262 (266)
Q Consensus 209 ~~~~~~~~~~l~~~gi~~~----~-~~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~~ 262 (266)
+....+++++|++.|+..- | .-.+.+++=|.-.-+.+++|++++++.++.++..
T Consensus 391 Gv~~~DvAKrLlD~GfHaPT~~FPliV~~tLMIEPTEsEsk~eLDrf~dami~I~~Ea~ 449 (496)
T COG1003 391 GVRALDVAKRLLDYGFHAPTMYFPLIVAGTLMIEPTESESKEELDRFIDAMIAIREEAD 449 (496)
T ss_pred CCcHHHHHHHHHhcCCCCCcccCccccccceeecCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 6789999999999999753 2 1468899999889999999999999998877653
No 349
>KOG1549|consensus
Probab=99.13 E-value=2.9e-09 Score=91.28 Aligned_cols=224 Identities=15% Similarity=0.152 Sum_probs=133.9
Q ss_pred CCceeecCC-----CHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCcc
Q psy6547 18 PGYNIIPYN-----DVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKL 92 (266)
Q Consensus 18 ~~v~~~~~~-----d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~ 92 (266)
..|+.+|.+ |++.+++.| .++++++.+..++|..|.+. ++++|.++|+++|+.+++|.+|. . |..
T Consensus 156 ~~Vt~lpv~~~~~~d~~~~~~~i--~~~T~lv~I~~Vnn~~gv~~----Pv~EI~~icr~~~v~v~~DaAQa-v---G~i 225 (428)
T KOG1549|consen 156 LEVTYLPVEDSGLVDISKLREAI--RSKTRLVSIMHVNNEIGVLQ----PVKEIVKICREEGVQVHVDAAQA-V---GKI 225 (428)
T ss_pred eEEEEeccCccccccHHHHHHhc--CCCceEEEEEecccCccccc----cHHHHHHHhCcCCcEEEeehhhh-c---CCc
Confidence 567777755 689999999 66899999999999999998 99999999999999999999993 3 331
Q ss_pred cccccCCCCcCeee--ecccccCCchhhhhheecHHhhhccC------CCC---CCCCCCCcHHHHHHHHHHHHHHhhc-
Q psy6547 93 LAIHYEDVRPDIVI--LGKALSGGLYPISAVLADDEVMGTLV------PGT---HGSTYGGNPLACKLAMTALDVILEE- 160 (266)
Q Consensus 93 ~~~~~~~~~~d~~~--~sK~~~~g~~~~g~~~~~~~~~~~~~------~~~---~~~~~~~~~~~~~a~~~~l~~~~~~- 160 (266)
..+...+.+|+.+ ..|++++. ++|++.+++. ...+. ... -...-+.....+...-++.+....+
T Consensus 226 -~vDV~eln~D~~s~s~HK~ygp~--~iGaLYvr~~-~~~~~~~p~~~GGgq~r~~rsGT~~~~~~~~~gsA~e~~~~~~ 301 (428)
T KOG1549|consen 226 -PVDVQELNADFLSISAHKIYGPP--GIGALYVRRK-RPRLRVEPPLSGGGQERGLRSGTVATPLAVGLGSAAEFVNKEM 301 (428)
T ss_pred -cccHHHcCchheeeecccccCCC--cceEEEEccC-CCcccccCcccCCccccccccCCcCchhhhhhHHHHHHHHhhc
Confidence 3344445566655 66999954 2888888751 11221 111 1111123444555555666665442
Q ss_pred -cHHHHHHHHHHHHHHHhhcccccC---CCcccEEecCccceeeEEEEeeCccc----hHHHHH---------------H
Q psy6547 161 -NMIENAYKMGEIFRSELSSPANKS---KASFKLSSGGLKKSINTLILSVSAIL----EVYDVC---------------I 217 (266)
Q Consensus 161 -~~~~~~~~~~~~l~~~l~~~~~~~---~~~~~~~~~g~~~~~~~~~~~~~~~~----~~~~~~---------------~ 217 (266)
....+++++...+...+.+...+. +.+. ..... ...|.++...+. +.+++. -
T Consensus 302 ~~~~~~~~~~~~~ll~~i~~~~~~~~~~G~~~--~~~~~---~~~~~~~~~~g~~~~~~~~~~~l~s~~a~~~~~~epsy 376 (428)
T KOG1549|consen 302 AYDEAIIKRLSEKLLMGIGQSLPEVTLNGSGK--SRYPG---LVSLSFPYVEGESLLMDLKDVALSSGSACTSASLEPSY 376 (428)
T ss_pred chhHHHHHHHHHHHHHHHhhhCchhhccCCcc--ccccc---ceeeecccccCcchhhhhhhhhhcccchhhcCCCCcch
Confidence 244555555555555554322221 1111 11112 233333310011 111111 1
Q ss_pred HHHHCCceeccCCCCEEEEeccCCCCHHHHHHHHHHHHHHHHHH
Q psy6547 218 KMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINTM 261 (266)
Q Consensus 218 ~l~~~gi~~~~~~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~ 261 (266)
.|+..|+-... ...++||+....++++|++++.+.+.+.+...
T Consensus 377 ~l~~~G~~~~~-~~~~iRis~G~y~t~~di~~~~~~i~~~v~~~ 419 (428)
T KOG1549|consen 377 VLRAIGVDEDL-AHSSIRISIGRYTTEEDIDYLVDAIKKLVSLL 419 (428)
T ss_pred hhhhcCcchhh-hcceeEEeeeeeCcHHHHHHHHHHHHHHHHhc
Confidence 11122221111 24789999999999999999999999987664
No 350
>PF00464 SHMT: Serine hydroxymethyltransferase; InterPro: IPR001085 Synonym(s): Serine hydroxymethyltransferase, Serine aldolase, Threonine aldolase Serine hydroxymethyltransferase (SHMT) is a pyridoxal phosphate (PLP) dependent enzyme and belongs to the aspartate aminotransferase superfamily (fold type I) []. The pyridoxal-P group is attached to a lysine residue around which the sequence is highly conserved in all forms of the enzyme []. The enzyme carries out interconversion of serine and glycine using PLP as the cofactor. SHMT catalyses the transfer of a hydroxymethyl group from N5, N10- methylene tetrahydrofolate to glycine, resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers and the mammalian enzyme forms a homotetramer [, ]. PLP dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalysed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), D-amino acid superfamily (fold type IV) and glycogen phophorylase family (fold type V) [, ]. In vertebrates, glycine hydroxymethyltransferase exists in a cytoplasmic and a mitochondrial form whereas only one form is found in prokaryotes.; GO: 0004372 glycine hydroxymethyltransferase activity, 0006544 glycine metabolic process, 0006563 L-serine metabolic process; PDB: 3GBX_B 3H7F_A 1YJS_A 2VMW_A 2W7H_A 2W7E_A 2VMY_B 2W7L_A 2VMZ_A 2VMS_A ....
Probab=99.13 E-value=2.1e-09 Score=93.10 Aligned_cols=208 Identities=17% Similarity=0.199 Sum_probs=124.5
Q ss_pred CHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccc-cCcCCcCcccccccCCCCcCee
Q psy6547 27 DVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQ-TGLGRTGKLLAIHYEDVRPDIV 105 (266)
Q Consensus 27 d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~-~~~~~~g~~~~~~~~~~~~d~~ 105 (266)
|.+++++++++. ++++|++-.... +-.-++++++++|++.|.+|++|-+| .|+--.|. +.. -+.. .|++
T Consensus 157 D~d~l~~~a~~~-kPklIi~G~S~y------~~~~d~~~~reIad~vga~l~~D~sH~~GLIa~g~-~~~-P~~~-ADvv 226 (399)
T PF00464_consen 157 DYDELEKLAKEH-KPKLIICGASSY------PRPIDFKRFREIADEVGAYLMADISHIAGLIAGGL-FPN-PFPY-ADVV 226 (399)
T ss_dssp -HHHHHHHHHHH---SEEEEE-SST------SS---HHHHHHHHHHTT-EEEEE-TTTHHHHHTTS-S---GCCT-SSEE
T ss_pred CHHHHHHHHhhc-CCCEEEECchhc------cCccCHHHHHHHHHhcCcEEEecccccccceehhe-ecC-cccc-ceEE
Confidence 799999999765 678999876543 22238899999999999999999999 44422222 111 1122 5777
Q ss_pred e--ecccccCCchhhhhheec--------------HHhhhccCCCCCCCCC-CCcHHHHHHHHHHHHHHhh---ccHHHH
Q psy6547 106 I--LGKALSGGLYPISAVLAD--------------DEVMGTLVPGTHGSTY-GGNPLACKLAMTALDVILE---ENMIEN 165 (266)
Q Consensus 106 ~--~sK~~~~g~~~~g~~~~~--------------~~~~~~~~~~~~~~~~-~~~~~~~~a~~~~l~~~~~---~~~~~~ 165 (266)
+ ..|+|.|+ +.|.++++ +++.+.++..-.-... +...-..++...++....+ .++.++
T Consensus 227 t~sThKtl~GP--rggiI~~~~~~~~~~~~~~~~~~~l~~~I~~avfP~~qg~~h~~~iaalAval~ea~~~~fk~Ya~q 304 (399)
T PF00464_consen 227 TGSTHKTLRGP--RGGIILTNKGSKNVDKKGKEIDEELAEKIDSAVFPGLQGGPHMHRIAALAVALKEALSPEFKEYAKQ 304 (399)
T ss_dssp EEESSGGG-SS--S-EEEEES-SEEEE-TTS-EEEHHHHHHHHHHHTTTT-SS--HHHHHHHHHHHHHHTSHHHHHHHHH
T ss_pred Eeecccccccc--CceEEEEcCCccccCCcccccHHHHHHHhccccCCCcccCcchhHHHHHHHHHhcccCHHHHHHHHH
Confidence 7 55999874 78888888 6666666532111111 1122233344444554433 368888
Q ss_pred HHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceec----cC-----CCCEEEE
Q psy6547 166 AYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTK----PI-----SNNIIRL 236 (266)
Q Consensus 166 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~----~~-----~~~~iR~ 236 (266)
+.++++.|.+.|.+ .+...+ ..|.++.++++++... +.+..+..+.|.+.||.+. |. ....+|+
T Consensus 305 Vv~NAk~La~~L~~-~G~~v~-----~ggTd~H~vlvd~~~~-~~~g~~a~~~Le~~gI~vnkn~iP~d~~~~~~sGlRl 377 (399)
T PF00464_consen 305 VVKNAKALAEALQE-RGFKVV-----TGGTDNHQVLVDLRSF-GIDGKEAEKALEEAGIIVNKNTIPGDRSPFVPSGLRL 377 (399)
T ss_dssp HHHHHHHHHHHHHH-TT-EEG-----GGS-SSSEEEEEGGGG-TS-HHHHHHHHHHTTEE-EEE--TTTSTTTT-SEEEE
T ss_pred HHHHHHHHHHHHhh-CCcEEE-----ECCCCCCeEEEEeccc-ccchHHHHHHHHhcCeeecccccCCCCCCCCCCEEEE
Confidence 99999999999988 554333 2355666899998652 4577888899999999985 22 2468999
Q ss_pred ecc----CCCCHHHHHHHHHH
Q psy6547 237 SPA----LNITEQELREGLDI 253 (266)
Q Consensus 237 ~~~----~~~t~~~i~~~~~~ 253 (266)
..+ ....++|++++.+.
T Consensus 378 GT~~lT~rG~~e~dm~~iA~~ 398 (399)
T PF00464_consen 378 GTPALTRRGMKEEDMKEIAEL 398 (399)
T ss_dssp ESHHHHHTT--HHHHHHHHHH
T ss_pred CCHHHHhCCCCHHHHHHHHhh
Confidence 875 45677777766554
No 351
>TIGR01365 serC_2 phosphoserine aminotransferase, Methanosarcina type. This model represents a variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in a small number of distantly related species, including Caulobacter crescentus, Mesorhizobium loti, and the archaeon Methanosarcina barkeri.
Probab=99.09 E-value=4.1e-09 Score=91.28 Aligned_cols=199 Identities=11% Similarity=-0.016 Sum_probs=130.1
Q ss_pred EEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCcccccccCCCCcCeeeecccccCCchhhhhhee
Q psy6547 44 FMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLA 123 (266)
Q Consensus 44 i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~~~~~~~~~~d~~~~sK~~~~g~~~~g~~~~ 123 (266)
+++.++.+.+|... +++++...+ +++++|+|-+-+ ++ +..+.++ +++.-+.+..|+|++. -.+++++.
T Consensus 131 v~~vhnETSTGv~n----pv~~i~~~~--~~~lliVDavSs-~g--~~~l~~d--~iDv~~tgsQK~L~~p-pGls~v~v 198 (374)
T TIGR01365 131 VVFTWNGTTSGVRV----PNGDFIPAD--REGLTICDATSA-AF--AQDLDYH--KLDVVTFSWQKVLGGE-GAHGMLIL 198 (374)
T ss_pred EEEecCCCchheec----ccccccccc--CCCcEEEEccch-hc--CCCCChh--HCcEEEEechhccCCC-CceEEEEE
Confidence 55777777788875 555544322 589999997774 32 3444444 3444444477999943 33788888
Q ss_pred cHHhhhccCCC-----------------------CCCCCCCCcHHHHHHHHHHHHHHhhc----cHHHHHHHHHHHHHHH
Q psy6547 124 DDEVMGTLVPG-----------------------THGSTYGGNPLACKLAMTALDVILEE----NMIENAYKMGEIFRSE 176 (266)
Q Consensus 124 ~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~a~~~~l~~~~~~----~~~~~~~~~~~~l~~~ 176 (266)
+++.++..+.. .....++++.....++..+|+++.++ +..++.+++.+.+++.
T Consensus 199 s~~Al~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~t~~TP~v~~l~a~~~~l~~i~~egGle~~~~Rh~~~a~~l~~~ 278 (374)
T TIGR01365 199 SPRAVARLESYTPAWPLPKIFRLTKGGKLNKKIFEGSTINTPSMLCVEDWLDALKWAESIGGLKPLIARADDNLAVLEAF 278 (374)
T ss_pred CHHHHHHHhhcCCCCCChhhhccccccchhhhhhcCCCCCChHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHH
Confidence 88877554310 01223344444555666667666553 4777888899999999
Q ss_pred hhcccc-cCCCcc-cEEecCccceeeEEEEeeCccc-----h-----HHHHHHHHHHCCceeccC----CCCEEEEeccC
Q psy6547 177 LSSPAN-KSKASF-KLSSGGLKKSINTLILSVSAIL-----E-----VYDVCIKMKDAGLVTKPI----SNNIIRLSPAL 240 (266)
Q Consensus 177 l~~~~~-~~~~~~-~~~~~g~~~~~~~~~~~~~~~~-----~-----~~~~~~~l~~~gi~~~~~----~~~~iR~~~~~ 240 (266)
+++ ++ ...+.. ....+.. ++.+.++.. +. + ..+|.+.|+++||.+.++ .+..+|+....
T Consensus 279 l~~-lg~l~~~~~~~~~rS~t---vt~v~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~gi~i~~G~~~~~~~~fRIg~~G 353 (374)
T TIGR01365 279 VAK-NNWIHFLAETPEIRSNT---SVCLKVVDP-AIDALDEDAQADFAKELISTLEKEGVAYDIGSYRDAPSGLRIWCGA 353 (374)
T ss_pred HHH-CCCcccCCCChhhcCCC---eEEEEeCCc-cccccccchhhHHHHHHHHHHHHCCEEEeccccccCCCceEEecCC
Confidence 998 77 333332 1112333 455555431 11 2 688999999999998865 24789999999
Q ss_pred CCCHHHHHHHHHHHHHHHH
Q psy6547 241 NITEQELREGLDIIINTIN 259 (266)
Q Consensus 241 ~~t~~~i~~~~~~l~~~~~ 259 (266)
..+.+|++++++.|+-+..
T Consensus 354 ~i~~~di~~l~~~l~~~~~ 372 (374)
T TIGR01365 354 TVEKSDLECLCPWLDWAFA 372 (374)
T ss_pred cCCHHHHHHHHHHHHHHHh
Confidence 9999999999999986543
No 352
>TIGR03799 NOD_PanD_pyr putative pyridoxal-dependent aspartate 1-decarboxylase. This enzyme is proposed here to be a form of aspartate 1-decarboxylase, pyridoxal-dependent, that represents a non-orthologous displacement to the more widely distributed pyruvoyl-dependent form (TIGR00223). Aspartate 1-decarboxylase makes beta-alanine, used usually in pathothenate biosynthesis, by decarboxylation from asparatate. A number of species with the PanB and PanC enzymes, however, lack PanD. This protein family occurs in a number of Proteobacteria that lack PanD. This enzyme family appears to be a pyridoxal-dependent enzyme (see pfam00282). The family was identified by Partial Phylogenetic Profiling; members in Geobacter sulfurreducens, G. metallireducens, and Pseudoalteromonas atlantica are clustered with the genes for PanB and PanC. We suggest the gene symbol panP (panthothenate biosynthesis enzyme, Pyridoxal-dependent).
Probab=99.08 E-value=2.4e-08 Score=90.23 Aligned_cols=223 Identities=17% Similarity=0.121 Sum_probs=130.4
Q ss_pred CceeecCC-----CHHHHHHHHhcC--CC--EEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCc
Q psy6547 19 GYNIIPYN-----DVDALEAKLKSN--PN--ICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRT 89 (266)
Q Consensus 19 ~v~~~~~~-----d~~~l~~~l~~~--~~--~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~ 89 (266)
+++.+|-+ |+++|++.|++. .+ +.+|+.+...+.+|.+- ++++|+++|+++|+++++|.+|++....
T Consensus 235 ~v~~vp~d~~g~~d~~~L~~~i~~~~~~g~~~~~vvataGtt~tGaiD----pl~eIa~i~~~~g~~lHVDaA~gg~~~~ 310 (522)
T TIGR03799 235 NLIAIKTDANNRIDVDALRDKCAELAEQNIKPLAIVGVAGTTETGNID----PLDEMADIAQELGCHFHVDAAWGGATLL 310 (522)
T ss_pred cEEEEEeCCCCcCCHHHHHHHHHHHHHCCCCcEEEEEEecCcCCCCcC----CHHHHHHHHHHcCCeEEEEchhhhHHHh
Confidence 56666643 799999998631 23 33344444455677775 9999999999999999999999653111
Q ss_pred CcccccccCCC-CcCeee--ecccccCCchhhhhheec-HHhhhccCC---CC-C--C-----CCCCCcHHH-HHHHHHH
Q psy6547 90 GKLLAIHYEDV-RPDIVI--LGKALSGGLYPISAVLAD-DEVMGTLVP---GT-H--G-----STYGGNPLA-CKLAMTA 153 (266)
Q Consensus 90 g~~~~~~~~~~-~~d~~~--~sK~~~~g~~~~g~~~~~-~~~~~~~~~---~~-~--~-----~~~~~~~~~-~~a~~~~ 153 (266)
...+.....++ ..|.++ ..|++.+. +..|+++.+ +...+.+.. +. . . .++.+++.. ......+
T Consensus 311 ~~~~r~~l~gle~aDSit~d~HK~l~~P-~g~G~llvr~~~~~~~~~~~~~Yl~~~~~~d~~~~~legsR~~~al~lw~a 389 (522)
T TIGR03799 311 SNTYRHLLKGIERADSVTIDAHKQLYVP-MGAGMVLFKDPALMSAIEHHAEYILRKGSKDLGSHTLEGSRPGMAMLVYAG 389 (522)
T ss_pred CHHHHHHhcCchhCCEEEEChhhcCCcC-cccEEEEEeCHHHHHHhccCcchhcCCCCCccccceeecCcchHHHHHHHH
Confidence 11111112343 567666 55988877 778888775 344444432 10 0 0 112222222 2246677
Q ss_pred HHHHhhc---cHHHHHHHHHHHHHHHhhccccc-CCCcccEEecCccceeeEEEEeeCcc--------------------
Q psy6547 154 LDVILEE---NMIENAYKMGEIFRSELSSPANK-SKASFKLSSGGLKKSINTLILSVSAI-------------------- 209 (266)
Q Consensus 154 l~~~~~~---~~~~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~-------------------- 209 (266)
++.++.+ .+.++..++++++.+.|++ ... ..+.. ..-. ++.|.+.....
T Consensus 390 L~~lG~~G~~~ii~~~~~la~~l~~~L~~-~~~~el~~~---p~l~---iv~Fr~~p~~~~~~l~~~~~~~~~~~~~~~~ 462 (522)
T TIGR03799 390 LHIIGRKGYELLIDQSIEKAKYFADLIQQ-QPDFELVTE---PELC---LLTYRYVPEEVQQALAKADEEQREKINELLD 462 (522)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHhh-CCCeEEecC---CCcc---EEEEEEeChhhcccccccchhhhhhHHHHHH
Confidence 7777664 4677778889999999887 432 11111 1112 56666432110
Q ss_pred chHHHHHHHHHHCCceeccC-----------CCCEEEEec-cCCCCHHHHHHHHHH
Q psy6547 210 LEVYDVCIKMKDAGLVTKPI-----------SNNIIRLSP-ALNITEQELREGLDI 253 (266)
Q Consensus 210 ~~~~~~~~~l~~~gi~~~~~-----------~~~~iR~~~-~~~~t~~~i~~~~~~ 253 (266)
.-...+.+++.+.|...... +..++|+++ +...|+++++.+++.
T Consensus 463 ~ln~~i~~~~~~~G~~~vs~t~l~~~~~~g~~~~~lR~~~~np~tt~~~i~~~l~~ 518 (522)
T TIGR03799 463 RLTKFIQKRQREAGKSFVSRTRLTPAQYDHQPTVVFRVVLANPLTTHEILQDILDE 518 (522)
T ss_pred HHHHHHHHHHHhcCCEEEEEEEecccccCCCCcEEEEEEecCCCCCHHHHHHHHHH
Confidence 01245666777777654321 124699976 456678888876653
No 353
>PRK06434 cystathionine gamma-lyase; Validated
Probab=99.07 E-value=1.5e-09 Score=94.46 Aligned_cols=220 Identities=19% Similarity=0.241 Sum_probs=127.3
Q ss_pred cCCCCCCceeecCCCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCcc
Q psy6547 13 FGPHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKL 92 (266)
Q Consensus 13 ~~~~~~~v~~~~~~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~ 92 (266)
...++.++++++.++.+.++ ++ .+++++|+++.+.|+++.+. ++++|.++|+++| +++|.++..- ..+.
T Consensus 124 ~~~~Gi~v~fvd~~~~~~~~--l~-~~~tklv~~e~~snpt~~v~----Di~~I~~la~~~~--lvVD~t~~s~-~~~~- 192 (384)
T PRK06434 124 LKTLGIHVDYIDTDRLNSLD--FD-PSNYDLIYAESITNPTLKVP----DIKNVSSFCHEND--VIVDATFASP-YNQN- 192 (384)
T ss_pred HHhcCcEEEEECCCChhhee--ec-CCCeeEEEEEcCCCCCceee----cHHHHHHHHHHcC--eEEECCCCCc-ccCC-
Confidence 34456778888776655555 42 22689999999988887776 9999999999998 4679998311 1122
Q ss_pred cccccCCCCcCeee--ecccccCCc-hhhhhhee-cHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHhhccHHHHHHH
Q psy6547 93 LAIHYEDVRPDIVI--LGKALSGGL-YPISAVLA-DDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYK 168 (266)
Q Consensus 93 ~~~~~~~~~~d~~~--~sK~~~~g~-~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~ 168 (266)
..+...|+++ .+|.++|.. .-.|.++. ++++.+.+...........+++.++.+...|+-+ +...++..+
T Consensus 193 ----pl~~gaDivv~S~tK~i~G~~d~~gG~vv~~~~~~~~~~~~~~~~~G~~~~~~~A~l~~~gL~tL--~~R~~r~~~ 266 (384)
T PRK06434 193 ----PLDLGADVVIHSATKYISGHSDVVMGVAGTNNKSIFNNLVERRKTLGSNPDPIQAYLALRGLKTL--GLRMEKHNK 266 (384)
T ss_pred ----chhcCCCEEEeecccccCCCCCceEEEEecCcHHHHHHHHHHHHhcCCCCCHHHHHHHHhCCCcH--HHHHHHHHH
Confidence 2234456655 559998520 11455545 4455454442211222334565555554444332 334566666
Q ss_pred HHHHHHHHhhccccc------CCCc---ccEEecCccceeeEEEEeeCccchHHHHHHHHH--HCCc--------eeccC
Q psy6547 169 MGEIFRSELSSPANK------SKAS---FKLSSGGLKKSINTLILSVSAILEVYDVCIKMK--DAGL--------VTKPI 229 (266)
Q Consensus 169 ~~~~l~~~l~~~~~~------~~~~---~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~--~~gi--------~~~~~ 229 (266)
++..+.+.|+. .+. +.+. ....+.|. ++.|++.. ...+.+|.+.|. ..+. +..|.
T Consensus 267 ~a~~~a~~L~~-~p~v~~V~yPgl~~~~~~~~g~g~---~~sf~l~~--~~~~~~f~~~l~l~~~~~slG~~~sl~~~p~ 340 (384)
T PRK06434 267 NGMELARFLRD-SKKISNVYYPDTEIGKKVLRGFGG---MLSFELRS--MEDVHKFIRNLEIPMVAASLGGVESLITLPV 340 (384)
T ss_pred HHHHHHHHHHc-CCCccEEECCChHHHHHhcCCCCc---eEEEEECC--HHHHHHHHHhCCcceEccCCCCCCeeeECCC
Confidence 77777777775 321 1111 00235577 99999964 344566666664 1111 11110
Q ss_pred -----------------CCCEEEEeccCCCCHHHHHHHHHHHHHHHH
Q psy6547 230 -----------------SNNIIRLSPALNITEQELREGLDIIINTIN 259 (266)
Q Consensus 230 -----------------~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~ 259 (266)
..+.||+|+.+. +.+.+++.|+++++
T Consensus 341 ~~~h~~~~~e~~~~~gi~~~liRlsvGlE----d~~dLi~dl~~Al~ 383 (384)
T PRK06434 341 ETSHSSLSPEERERLGISDNLVRFSIGIE----DIDDLIKDIENALS 383 (384)
T ss_pred ccccccCCHHHHHhcCCCcCeEEEEeCcC----CHHHHHHHHHHHhc
Confidence 246899996554 45666777777664
No 354
>COG1103 Archaea-specific pyridoxal phosphate-dependent enzymes [General function prediction only]
Probab=99.03 E-value=2.8e-08 Score=79.88 Aligned_cols=226 Identities=15% Similarity=0.237 Sum_probs=144.5
Q ss_pred CCCceeecCC-------CHHH----HHHHHhcC-CCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEecccc
Q psy6547 17 MPGYNIIPYN-------DVDA----LEAKLKSN-PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQT 84 (266)
Q Consensus 17 ~~~v~~~~~~-------d~~~----l~~~l~~~-~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~ 84 (266)
+-+|..||+. +++. +++..++. ..+++.+++.+.++.|.+. +-+.++++|+++|++++..-+|+
T Consensus 121 gl~v~eVp~tg~Pey~i~~e~y~~viee~~~~~g~~~~lallTh~Dg~YGNl~----Dakkva~ic~e~gvPlllN~AYt 196 (382)
T COG1103 121 GLNVAEVPNTGYPEYKITPEGYAEVIEEVKDEGGDPPALALLTHVDGEYGNLA----DAKKVAKICREYGVPLLLNCAYT 196 (382)
T ss_pred CCeEEecCCCCCCceEecHHHHHHHHHHHHhccCCCceEEEEeccCCCcCCch----hhHHHHHHHHHcCCceEeeccee
Confidence 4566677643 3444 44444443 3589999999999999887 99999999999999999999995
Q ss_pred CcCCcCcccccccCCCCcCeeeec--ccccCCchhhhhheecHHhhhccCCC-----------CCCCCCCCcHH-HHHHH
Q psy6547 85 GLGRTGKLLAIHYEDVRPDIVILG--KALSGGLYPISAVLADDEVMGTLVPG-----------THGSTYGGNPL-ACKLA 150 (266)
Q Consensus 85 ~~~~~g~~~~~~~~~~~~d~~~~s--K~~~~g~~~~g~~~~~~~~~~~~~~~-----------~~~~~~~~~~~-~~~a~ 150 (266)
.|.. ......+.+|+++-| |.+++. -|+|.+..+++..+..... ..+.|..+.|+ .+.|.
T Consensus 197 ----~Grm-pvs~ke~g~DFiVgSGHKsmAAs-~PiGvl~~~eE~ae~V~r~Sg~~~~~KEvellGCT~rGapivTlmAS 270 (382)
T COG1103 197 ----VGRM-PVSGKEIGADFIVGSGHKSMAAS-APIGVLAMSEEWAEIVLRRSGRAFPKKEVELLGCTVRGAPIVTLMAS 270 (382)
T ss_pred ----eccc-cccccccCCCEEEecCccchhcc-CCeeEEeehhHHHHHHHhhcccccccceeeeecccccCchHHHHHhc
Confidence 2331 233445677877744 888855 5899998888876543221 12223333333 22222
Q ss_pred HHHHHHHhhccHHHHHHHHHHHHHHHhhccccc-CCCcccEEecCccceeeEEEEeeCc------cchHHHHHHHHHHCC
Q psy6547 151 MTALDVILEENMIENAYKMGEIFRSELSSPANK-SKASFKLSSGGLKKSINTLILSVSA------ILEVYDVCIKMKDAG 223 (266)
Q Consensus 151 ~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~------~~~~~~~~~~l~~~g 223 (266)
.-- ..+.-..|..-.+.++++.+.|++ ++. ..+...+..+- ...|..+.-. .....-+.++|+++|
T Consensus 271 fP~--V~eRVkrWdeEv~kaR~fv~elEk-igg~~qlG~rPk~Hd----Lm~Fetp~f~eIakk~~r~gyFlY~ELK~Rg 343 (382)
T COG1103 271 FPH--VVERVKRWDEEVEKARWFVAELEK-IGGVKQLGERPKNHD----LMKFETPVFHEIAKKHKRKGYFLYEELKKRG 343 (382)
T ss_pred CHH--HHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHhCCCCcccc----eeeecCchHHHHHHhCcCCceeeHHHHHhcC
Confidence 211 111222344444567888888888 663 44544333333 3555555311 111234678899999
Q ss_pred cee-ccCCCCEEEEeccCCCCHHHHHHHHHHHHHHHHH
Q psy6547 224 LVT-KPISNNIIRLSPALNITEQELREGLDIIINTINT 260 (266)
Q Consensus 224 i~~-~~~~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~ 260 (266)
|.. .|+-..++.+|. +..+.|+++..++.+++++++
T Consensus 344 I~GI~~G~Tk~~K~sv-yGl~~Eqve~V~~afkeI~ek 380 (382)
T COG1103 344 IHGIQPGQTKYFKLSV-YGLSWEQVEYVVDAFKEIAEK 380 (382)
T ss_pred ccccccCceeEEEEEe-ecCCHHHHHHHHHHHHHHHHh
Confidence 875 466667888885 467999999999999998875
No 355
>PRK05367 glycine dehydrogenase; Provisional
Probab=99.02 E-value=3.5e-08 Score=94.61 Aligned_cols=213 Identities=13% Similarity=0.055 Sum_probs=132.2
Q ss_pred CCCCCCceeecCCCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCccc
Q psy6547 14 GPHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLL 93 (266)
Q Consensus 14 ~~~~~~v~~~~~~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~ 93 (266)
.+.+-+|+.++.++ + ++ ++++.++ +..+.+..|.+. ++++|.++||++|+++++|-.+...+. ..
T Consensus 187 ~~~G~ev~~~~~~~--d----~~-~~~~~~v-lvq~p~~~G~i~----d~~~i~~~ah~~Gal~~vda~~~Al~~-l~-- 251 (954)
T PRK05367 187 EPLGIEVVVGDAAK--A----LD-HDDVFGV-LLQYPGTSGEVR----DYTALIAAAHARGALVAVAADLLALTL-LT-- 251 (954)
T ss_pred HhCCCEEEEecCcc--C----CC-cccEEEE-EEecCCCCeeec----cHHHHHHHHHHcCCEEEEEehhhhccC-CC--
Confidence 45666777777643 1 11 2345554 444566788876 899999999999999999976633211 11
Q ss_pred ccccCCCCcCeee--eccc---cc-CCchhhhhheecHHhhhccCCCCCC-------C--------------CC---CCc
Q psy6547 94 AIHYEDVRPDIVI--LGKA---LS-GGLYPISAVLADDEVMGTLVPGTHG-------S--------------TY---GGN 143 (266)
Q Consensus 94 ~~~~~~~~~d~~~--~sK~---~~-~g~~~~g~~~~~~~~~~~~~~~~~~-------~--------------~~---~~~ 143 (266)
.... ...|+++ .-|+ ++ || -..|++.+++++.+.+.+...+ . -+ +.|
T Consensus 252 ~pge--~GaDi~vgs~qkfg~P~g~GG-P~aGflavr~~~~r~lpgrivG~s~d~~g~~~~~lalqtReqhiRrekaTsN 328 (954)
T PRK05367 252 PPGE--MGADIAVGSAQRFGVPMGFGG-PHAAYFAVRDAYKRSMPGRIVGVSVDAAGNPALRLALQTREQHIRREKATSN 328 (954)
T ss_pred Chhh--cCCCEEEeeCcccCCCCCCCC-CCEEEEEECHHHHhhCCCCeeeeecccCCCcccccccccccccccccccccc
Confidence 1223 3456655 4465 22 34 3488888888877776532110 0 00 111
Q ss_pred HHH---HHHHHHH--HHHHhh---ccHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHH
Q psy6547 144 PLA---CKLAMTA--LDVILE---ENMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDV 215 (266)
Q Consensus 144 ~~~---~~a~~~~--l~~~~~---~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 215 (266)
.-+ ..++.++ +..+.. +++.+++..++.+++++|+. .+...... .... .+.+.++ .++.++
T Consensus 329 ict~qaL~a~~a~~y~~~~g~~Gl~~Ia~~~~~la~~l~~~L~~-~G~~~~~~---~~f~---~~~~~~~----~~~~~i 397 (954)
T PRK05367 329 ICTAQVLLAVMASMYAVYHGPEGLKAIARRVHRLAAILAAGLRA-LGLEVVHD---SFFD---TLTVEVG----GDAAAV 397 (954)
T ss_pred cchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHh-cCcccCCC---CCCC---eEEEeCC----CCHHHH
Confidence 111 1112211 233344 34677888899999999876 44322111 0011 2334432 268899
Q ss_pred HHHHHHCCceeccCCCCEEEEeccCCCCHHHHHHHHHHHH
Q psy6547 216 CIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIII 255 (266)
Q Consensus 216 ~~~l~~~gi~~~~~~~~~iR~~~~~~~t~~~i~~~~~~l~ 255 (266)
.++|+++||.++....+.+|+|++..+|++||+++++.|.
T Consensus 398 ~~~l~~~gi~~~~~~~~~l~is~~e~~t~~did~l~~~l~ 437 (954)
T PRK05367 398 LARALAAGINLRRVDDDHVGISLDETTTREDLAALLAVFG 437 (954)
T ss_pred HHHHHHCCceeccccCCEEEEEecccCCHHHHHHHHHHHc
Confidence 9999999999977667899999999999999999999997
No 356
>PLN02263 serine decarboxylase
Probab=99.01 E-value=4e-08 Score=86.81 Aligned_cols=219 Identities=15% Similarity=0.035 Sum_probs=138.3
Q ss_pred CCCCceeecCC-----CHHHHHHHHhcCC-CEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCC-----EEEEecccc
Q psy6547 16 HMPGYNIIPYN-----DVDALEAKLKSNP-NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNV-----LFIADEVQT 84 (266)
Q Consensus 16 ~~~~v~~~~~~-----d~~~l~~~l~~~~-~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~-----~li~De~~~ 84 (266)
++-+++.||-+ |+++|++.|+++. .+.+|+.+-...+.|.+ +++++|.++|+++|+ ++.+|.+|.
T Consensus 198 lgi~~~~Vp~d~~g~mD~~aL~~aI~~d~~~P~iVvataGTT~~GAi----Dpi~eIa~i~~~~g~~~~~iwlHVDAA~G 273 (470)
T PLN02263 198 YRMECVKVDTLVSGEIDCADFKAKLLANKDKPAIINVNIGTTVKGAV----DDLDLVIKTLEECGFSQDRFYIHCDGALF 273 (470)
T ss_pred cCCcceEeccCCCCcCcHHHHHHHHHhCCCCcEEEEEEecCCCCcCC----CCHHHHHHHHHHcCCccCCeeEEEeccch
Confidence 44566677643 7999999996653 34555555555556766 599999999999997 999999998
Q ss_pred CcCC----cCcccccccCCCCcCeee--ecccccCCchhhhhheecHHhhhccCCC-----CCCCCCCCcHH--HHHHHH
Q psy6547 85 GLGR----TGKLLAIHYEDVRPDIVI--LGKALSGGLYPISAVLADDEVMGTLVPG-----THGSTYGGNPL--ACKLAM 151 (266)
Q Consensus 85 ~~~~----~g~~~~~~~~~~~~d~~~--~sK~~~~g~~~~g~~~~~~~~~~~~~~~-----~~~~~~~~~~~--~~~a~~ 151 (266)
|+.. ....+.+. ...|-++ ..|+++.. ++.|.++.+.+..+.+... ....+..++.- ....+.
T Consensus 274 G~~lPf~~~~~~~df~---~~vDSIsvD~HK~l~~P-~~cgvll~R~~~~~~~~~~~~Yl~~~d~ti~gSR~g~~al~lW 349 (470)
T PLN02263 274 GLMMPFVKRAPKVTFK---KPIGSVSVSGHKFVGCP-MPCGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAPIFLW 349 (470)
T ss_pred hhHhhhcccccccCCC---cCccEEEECCccccCCC-cCEEEEEEehhhHhhhccChHhhCCCCCCcCCCCCcHHHHHHH
Confidence 7521 11111111 1233333 66999987 8888888886654433211 01123333332 345667
Q ss_pred HHHHHHhhccH---HHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceecc
Q psy6547 152 TALDVILEENM---IENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKP 228 (266)
Q Consensus 152 ~~l~~~~~~~~---~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~ 228 (266)
.+|+.++.+++ .++..++++++.++|++ .+...+ .....+ .+.|..+. + . +..+|..+..
T Consensus 350 ~~L~~~G~~G~~~~i~~~~~~A~~l~~~l~~-~g~~~~---~~p~s~---~V~f~~p~----~-~-----~~~~gW~L~~ 412 (470)
T PLN02263 350 YTLNRKGYRGFQKEVQKCLRNAHYLKDRLRE-AGISAM---LNELSS---TVVFERPK----D-E-----EFVRRWQLAC 412 (470)
T ss_pred HHHHHhCHHHHHHHHHHHHHHHHHHHHHHHh-CCCeEE---eCCCce---EEEEecCc----h-H-----HhhcceEEcc
Confidence 77777776654 44555678888888887 432111 111222 45554332 1 1 1346777766
Q ss_pred CCCCEEEEeccCCCCHHHHHHHHHHHHHHHHH
Q psy6547 229 ISNNIIRLSPALNITEQELREGLDIIINTINT 260 (266)
Q Consensus 229 ~~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~ 260 (266)
. ++.++++.+..++++.+|++++.|++....
T Consensus 413 ~-~~~~Hivvmphv~~~~id~fi~DL~~~~~~ 443 (470)
T PLN02263 413 Q-GNIAHVVVMPSVTIEKLDYFLKELVEKRST 443 (470)
T ss_pred C-CCcEEEEEcCCCCHHHHHHHHHHHHHHHhh
Confidence 4 467999988888999999999999987764
No 357
>PLN02414 glycine dehydrogenase (decarboxylating)
Probab=99.01 E-value=3.2e-08 Score=94.64 Aligned_cols=213 Identities=11% Similarity=0.063 Sum_probs=129.3
Q ss_pred CCCCCceeecCCCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCcccc
Q psy6547 15 PHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLA 94 (266)
Q Consensus 15 ~~~~~v~~~~~~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~~ 94 (266)
+.+.+|+.++.++.+ .. .+.+.+++ ..+.+..|.+. ++++|.++||++|+++++ .++. ++-.+- -.
T Consensus 215 ~~GieV~~v~~~~~~----~~--~~~v~~vl-vq~P~~~G~v~----dv~~I~~~ah~~GaL~iV-aad~-lal~~l-~~ 280 (993)
T PLN02414 215 GLGLEVVVADEKDFD----YS--SGDVCGVL-VQYPATDGEVL----DYAEFVKNAHANGVKVVM-ATDL-LALTML-KP 280 (993)
T ss_pred hcCCEEEEecchhhc----cc--cCceEEEE-EecCCCCeEEc----CHHHHHHHHHHcCCEEEE-EECH-HHhcCC-CC
Confidence 455666666653321 11 22344444 44556688886 899999999999999999 4441 111111 01
Q ss_pred cccCCCCcCeee--ecccc---c-CCchhhhhheecHHhhhccCCCCCC------------------------CCCCCcH
Q psy6547 95 IHYEDVRPDIVI--LGKAL---S-GGLYPISAVLADDEVMGTLVPGTHG------------------------STYGGNP 144 (266)
Q Consensus 95 ~~~~~~~~d~~~--~sK~~---~-~g~~~~g~~~~~~~~~~~~~~~~~~------------------------~~~~~~~ 144 (266)
... +..|+++ .-|+. | || -..|++.+++++.+.+.....+ ...+.|.
T Consensus 281 pge--~GADi~vgsgqKwg~P~G~GG-P~aGflavr~~~~r~~PgriVG~s~d~~g~~~~~l~LqtReqhiRrEkaTsNi 357 (993)
T PLN02414 281 PGE--WGADIVVGSAQRFGVPMGYGG-PHAAFLATSQEYKRLMPGRIIGVSVDSSGKPALRMAMQTREQHIRRDKATSNI 357 (993)
T ss_pred Hhh--ccCcEEEECCCccccCCCCCC-CCeeEEEECHHHHhhCCCcccCcccCCCCCcccccccccccchhhhcccccch
Confidence 222 3456655 34554 2 44 4488999988876654321000 0113333
Q ss_pred HHHHHHHHHHH-----HHhh---ccHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHH
Q psy6547 145 LACKLAMTALD-----VILE---ENMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVC 216 (266)
Q Consensus 145 ~~~~a~~~~l~-----~~~~---~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 216 (266)
-+..+..+++. .+.. +++.+++.++..+++++|+. .+...... .... .+.|.++ ++.++.
T Consensus 358 ct~qaL~A~la~~y~~~~g~~Gl~~Ia~ri~~la~~l~~~L~~-~G~~~~~~---~~f~---~vt~~~~-----~~~~v~ 425 (993)
T PLN02414 358 CTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGVFAAGLKK-LGFQVQSL---PFFD---TVKVKCS-----DADAIA 425 (993)
T ss_pred hHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhh-cCCccCCC---CCcC---eEEEecC-----CHHHHH
Confidence 22333333332 2222 34678888999999999987 55322111 1011 3444442 358899
Q ss_pred HHHHHCCceeccCCCCEEEEeccCCCCHHHHHHHHHHHHH
Q psy6547 217 IKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIIN 256 (266)
Q Consensus 217 ~~l~~~gi~~~~~~~~~iR~~~~~~~t~~~i~~~~~~l~~ 256 (266)
++|.++||.++....+.+|+|++..+|++||+++++.|..
T Consensus 426 ~~L~~~gI~l~~~~~~~lrvs~~e~~T~edId~L~~~l~~ 465 (993)
T PLN02414 426 DAAAKVGINLRVVDANTVTVSFDETTTLEDVDKLFKVFAG 465 (993)
T ss_pred HHHHHCCCeeEEecCCeEEEEeeccCCHHHHHHHHHHHcc
Confidence 9999999999877678899999999999999999999963
No 358
>PRK13578 ornithine decarboxylase; Provisional
Probab=98.99 E-value=6.6e-08 Score=89.38 Aligned_cols=224 Identities=10% Similarity=0.024 Sum_probs=134.3
Q ss_pred CHHHHHHHHhcC-CC-------EEEEE-EccccCCCCcccCChHHHHHHHHH-HHhcCCEEEEeccccCcCCcCcc---c
Q psy6547 27 DVDALEAKLKSN-PN-------ICAFM-VEPIQGEAGAVVPDDGYLKKVRAL-CSQYNVLFIADEVQTGLGRTGKL---L 93 (266)
Q Consensus 27 d~~~l~~~l~~~-~~-------~~~i~-~~~~~~~~g~~~~~~~~l~~l~~l-~~~~g~~li~De~~~~~~~~g~~---~ 93 (266)
+.+.+++.|+++ ++ .++++ .+|.+ .|.+. ++++|.++ ++.++ +|++||+|.++...... +
T Consensus 261 ~~~~i~~~i~~~~p~~~~~~~p~k~vvit~pTY--dG~~y----di~~I~~~~~h~~~-~llvDEAhgah~~F~p~~~~~ 333 (720)
T PRK13578 261 DEEYLREQIREVAPERADEARPFRLAVIQLGTY--DGTIY----NARQVVDKIGHLCD-YILFDSAWVGYEQFIPMMADC 333 (720)
T ss_pred cHHHHHHHHHhcCccccccccCceEEEEECCCC--cceee----cHHHHHHHhhccCC-cEEEeCcchhhhccCcccccC
Confidence 367799999776 23 45555 44444 67776 88999998 68888 99999999664333321 2
Q ss_pred ccccCCCCcC----eee--ecccccCCchhhhhheecHHhhh---------ccCC-CCCCCCCCCcHHHHHHHHHHHHHH
Q psy6547 94 AIHYEDVRPD----IVI--LGKALSGGLYPISAVLADDEVMG---------TLVP-GTHGSTYGGNPLACKLAMTALDVI 157 (266)
Q Consensus 94 ~~~~~~~~~d----~~~--~sK~~~~g~~~~g~~~~~~~~~~---------~~~~-~~~~~~~~~~~~~~~a~~~~l~~~ 157 (266)
.-......+| +++ ..|.+++= -..+++..+...++ .++. ....++.++|.+.+++...+-..+
T Consensus 334 p~~al~~GaD~p~i~v~QStHKtL~al-TQaS~LHvk~~~i~g~~~~v~~~r~~~al~m~qSTSPsY~LmASLDva~~~m 412 (720)
T PRK13578 334 SPLLLELNENDPGIFVTQSVHKQQAGF-SQTSQIHKKDNHIKGQARYCPHKRLNNAFMLHASTSPFYPLFAALDVNAKMH 412 (720)
T ss_pred ChhhhhcCCCCCCeEEEEChhhcchhh-hhHhhhhcCCcccccccccCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHHH
Confidence 2112234555 555 66888752 33445544332211 1111 134455567777777777666655
Q ss_pred hh---ccHHHHHHHHHHHHHHHh-hccccc-CCC-cccE--------------------------EecCcc---------
Q psy6547 158 LE---ENMIENAYKMGEIFRSEL-SSPANK-SKA-SFKL--------------------------SSGGLK--------- 196 (266)
Q Consensus 158 ~~---~~~~~~~~~~~~~l~~~l-~~~~~~-~~~-~~~~--------------------------~~~g~~--------- 196 (266)
.. +.+++...++...+|+.+ +. ... ..+ +..+ .-.|.+
T Consensus 413 ~~~~G~~l~~~~i~~a~~~R~~l~~~-~~~~~~~~p~~v~~~~~~~~~~~~~~~~~~~w~~~p~~~whgf~~~~~~~~~l 491 (720)
T PRK13578 413 EGESGRRLWMECVKLGIEARKLILAR-CKLIRPFIPPVVDGKPWQDYPTEQIASDLRFFSFEPGEKWHGFEGYAEDQYFV 491 (720)
T ss_pred HHhhCHHHHHHHHHHHHHHHHHHHHh-CCCeeecccccccccccccCchhhhcccccccccccCcccccccccccccccc
Confidence 53 347777778888888777 32 221 101 0000 000100
Q ss_pred ce-eeEEEEeeCc---------cchHHHHHHHHHHCCceeccCCCCEEEEeccCCCCHHHHHHHHHHHHHHHH
Q psy6547 197 KS-INTLILSVSA---------ILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTIN 259 (266)
Q Consensus 197 ~~-~~~~~~~~~~---------~~~~~~~~~~l~~~gi~~~~~~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~ 259 (266)
-| =+.+.++.-+ |..+..+.+.|.++||.+.-.+...+-+-++...|+++++++++.|.++-+
T Consensus 492 DP~KltI~t~G~~~~~G~~~~~Gipg~~l~~~L~e~gI~~E~~d~~~vL~l~s~g~t~~~~~~Lv~aL~~f~~ 564 (720)
T PRK13578 492 DPCKLLLTTPGIDAETGEYEDFGIPATILANYLRENGIVPEKCDLNSILFLLTPAEDMAKLQQLVAMLARFEK 564 (720)
T ss_pred CCceEEEEcCCcCcccccccccCccHHHHHHHHHHcCCEEEecCCCeEEEEeCCCCCHHHHHHHHHHHHHHHH
Confidence 00 1222222100 122688999998889999988888888888899999999999999987744
No 359
>PRK15400 lysine decarboxylase CadA; Provisional
Probab=98.97 E-value=7e-08 Score=89.11 Aligned_cols=223 Identities=12% Similarity=0.033 Sum_probs=138.6
Q ss_pred CHHHHHHHHhcCCCEE----EEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCcccc-ccc--CC
Q psy6547 27 DVDALEAKLKSNPNIC----AFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLA-IHY--ED 99 (266)
Q Consensus 27 d~~~l~~~l~~~~~~~----~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~~-~~~--~~ 99 (266)
+.+.+++.++++++.+ +++.+|.+ .|.+. .++.|.++|+.++ |++||+|.++......+. ... .+
T Consensus 281 ~~e~i~~~i~~~p~ak~p~~~vit~pTY--dG~~y----d~~~I~~~~~~~~--ilvDEAwgah~~F~p~~~~~sam~~g 352 (714)
T PRK15400 281 QHATIAKRVKETPNATWPVHAVITNSTY--DGLLY----NTDFIKKTLDVKS--IHFDSAWVPYTNFSPIYEGKCGMSGG 352 (714)
T ss_pred CHHHHHHHHHhCccccCccEEEEECCCC--ccEec----CHHHHHHHhCCCC--EEEEccchhhhccCcccCCcChhhcC
Confidence 4899999998876444 66666655 67776 8889999998887 689999976533333221 111 12
Q ss_pred CC-cC--eee--ecccccCCchhhhhheecHHhh-hccCC-CCCCCCCCCcHHHHHHHHHHHHHHhh---ccHHHHHHHH
Q psy6547 100 VR-PD--IVI--LGKALSGGLYPISAVLADDEVM-GTLVP-GTHGSTYGGNPLACKLAMTALDVILE---ENMIENAYKM 169 (266)
Q Consensus 100 ~~-~d--~~~--~sK~~~~g~~~~g~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~a~~~~l~~~~~---~~~~~~~~~~ 169 (266)
-. -+ +++ ..|.+++= -..+++..+..+- +.++. ....+|.+++.+.+++...+...++. +.++++..+.
T Consensus 353 a~~~~~i~vtQStHKtL~al-TQaS~LHvkg~vd~~~~n~a~~m~~STSPsY~l~ASLD~a~~~m~~~~G~~l~~~~i~~ 431 (714)
T PRK15400 353 RVEGKVIYETQSTHKLLAAF-SQASMIHVKGDVNEETFNEAYMMHTTTSPHYGIVASTETAAAMMKGNAGKRLINGSIER 431 (714)
T ss_pred CCCCCceEEEEchhhcccch-hHHhHHHHcCCCCHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 11 12 444 66988752 2333443322111 11111 13455566778888888877777763 3577888888
Q ss_pred HHHHHHHhhccccc-------CCCcccE------E-------ecCcc---------ce-eeEEEEeeC--------ccch
Q psy6547 170 GEIFRSELSSPANK-------SKASFKL------S-------SGGLK---------KS-INTLILSVS--------AILE 211 (266)
Q Consensus 170 ~~~l~~~l~~~~~~-------~~~~~~~------~-------~~g~~---------~~-~~~~~~~~~--------~~~~ 211 (266)
...+|+.+.+ +.. ..+..+. + -.|.+ -| =+.+.++.- .+..
T Consensus 432 a~~~R~~l~~-~~~~~~~w~~~~~~~~~~~~~~~w~~~p~~~whgf~~~~~~~~~lDP~Klti~tpgi~~~g~~~~~Gip 510 (714)
T PRK15400 432 AIKFRKEIKR-LRTESDGWFFDVWQPDHIDTTECWPLRSDSTWHGFKNIDNEHMYLDPIKVTLLTPGMKKDGTMSDFGIP 510 (714)
T ss_pred HHHHHHHHHh-CCCcccCceEEecChhhcccchhcccCccccccCcccccccccccCCceEEEEeCCCCCCccccccCCC
Confidence 8888888876 321 0110000 0 00100 00 123333220 1456
Q ss_pred HHHHHHHHHHCCceeccCCCCEEEEeccCCCCHHHHHHHHHHHHHHHH
Q psy6547 212 VYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTIN 259 (266)
Q Consensus 212 ~~~~~~~l~~~gi~~~~~~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~ 259 (266)
+..+.+.|.++||.+.-.+...+-+.++...|+++++++++.|.++-+
T Consensus 511 g~~v~~~L~e~gI~~E~~d~~~iLfl~s~g~t~~~~~~L~~aL~~f~~ 558 (714)
T PRK15400 511 ASIVAKYLDEHGIVVEKTGPYNLLFLFSIGIDKTKALSLLRALTDFKR 558 (714)
T ss_pred HHHHHHHHHHcCCEEEecCCCeEEEEeCCCCCHHHHHHHHHHHHHHHH
Confidence 788999999999999988889999998999999999999999987643
No 360
>PRK15399 lysine decarboxylase LdcC; Provisional
Probab=98.94 E-value=1.6e-07 Score=86.80 Aligned_cols=222 Identities=13% Similarity=0.043 Sum_probs=136.5
Q ss_pred CHHHHHHHHhcCCCE----EEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEE-EEeccccCcCCcCcccc-ccc--C
Q psy6547 27 DVDALEAKLKSNPNI----CAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLF-IADEVQTGLGRTGKLLA-IHY--E 98 (266)
Q Consensus 27 d~~~l~~~l~~~~~~----~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~l-i~De~~~~~~~~g~~~~-~~~--~ 98 (266)
+.+.+++.++++++. ++++.+|.+ .|.+. ++++|.++| |+.+ ++||+|.++......+. ... .
T Consensus 281 ~~e~I~~~i~~~p~~~~p~~vvit~pTY--dGi~y----d~~~I~~~~---g~~~ilvDEAhgah~~F~p~~~~~sam~~ 351 (713)
T PRK15399 281 TRDSIEEKVAATTQAQWPVHAVITNSTY--DGLLY----NTDWIKQTL---DVPSIHFDSAWVPYTHFHPIYQGKSGMSG 351 (713)
T ss_pred cHHHHHHHHHhCCCcCCceEEEEECCCC--Cceee----CHHHHHHHh---CCCEEEEeccchhhhhcCcccCCcChhhC
Confidence 459999999887644 555566554 67775 777788877 6776 59999976433332121 111 1
Q ss_pred CCCcCee-----eecccccCCchhhhhheecHHhh-hccCC-CCCCCCCCCcHHHHHHHHHHHHHHhh---ccHHHHHHH
Q psy6547 99 DVRPDIV-----ILGKALSGGLYPISAVLADDEVM-GTLVP-GTHGSTYGGNPLACKLAMTALDVILE---ENMIENAYK 168 (266)
Q Consensus 99 ~~~~d~~-----~~sK~~~~g~~~~g~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~a~~~~l~~~~~---~~~~~~~~~ 168 (266)
+-.+|.+ +..|.+++= -..+++..+..+- +.++. ....+|.+++.+.+++...+...++. +.++++..+
T Consensus 352 ~~~aD~~i~~tQStHKtL~al-TQaS~iHvk~~vd~~~~n~a~~m~~STSPsY~LmASLD~a~~~m~~~~G~~l~~~~i~ 430 (713)
T PRK15399 352 ERVPGKVIFETQSTHKMLAAF-SQASLIHIKGEYDEETFNEAFMMHTSTSPSYPIVASVETAAAMLRGNPGKRLINRSVE 430 (713)
T ss_pred CCCCCeeeeeeeehhcccccc-chheeeeecCCCCHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 1134554 477988752 2334444422211 11111 13455566788888888887777763 347788888
Q ss_pred HHHHHHHHhhccccc-------CCCccc-E------------EecCcc---------ce-eeEEEEee--------Cccc
Q psy6547 169 MGEIFRSELSSPANK-------SKASFK-L------------SSGGLK---------KS-INTLILSV--------SAIL 210 (266)
Q Consensus 169 ~~~~l~~~l~~~~~~-------~~~~~~-~------------~~~g~~---------~~-~~~~~~~~--------~~~~ 210 (266)
....+|+.+.+ +.. ..+..+ . .-+|.+ -| =+.+.++. ..+.
T Consensus 431 ~a~~fR~~l~~-~~~~~~~w~f~~~~~~~~~~~~~w~l~p~~~whgf~~~~~~~~~lDP~KltI~t~g~~~~g~~~~~Gi 509 (713)
T PRK15399 431 RALHFRKEVQR-LREESDGWFFDIWQPENVDEAECWPVAPGEQWHGFKDADADHMFLDPVKVTILTPGMDEQGNMSEEGI 509 (713)
T ss_pred HHHHHHHHHHh-ccccccCceeeecCccccCCccceecCCCcccccccccccccccCCCceEEEEecCcccccccccCCC
Confidence 88888888876 321 011000 0 000000 00 13333331 1156
Q ss_pred hHHHHHHHHHHCCceeccCCCCEEEEeccCCCCHHHHHHHHHHHHHHHH
Q psy6547 211 EVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTIN 259 (266)
Q Consensus 211 ~~~~~~~~l~~~gi~~~~~~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~ 259 (266)
.+..+.+.|.++||.+.-.+...+-+.++...|+++++++++.|.++-+
T Consensus 510 ~g~~l~~~L~e~gI~~E~~d~~~vL~l~s~g~t~~~~~~L~~aL~~f~~ 558 (713)
T PRK15399 510 PAALVAKFLDERGIVVEKTGPYNLLFLFSIGIDKTKAMGLLRGLTEFKR 558 (713)
T ss_pred CHHHHHHHHHHcCCEEEecCCCeEEEEeCCCCCHHHHHHHHHHHHHHHH
Confidence 7888999999999999998888998888899999999999999987743
No 361
>PRK13237 tyrosine phenol-lyase; Provisional
Probab=98.91 E-value=1.5e-07 Score=82.63 Aligned_cols=226 Identities=15% Similarity=0.107 Sum_probs=137.2
Q ss_pred CHHHHHHHHhcC--CCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEecccc-C---cCCc--Ccccccc--
Q psy6547 27 DVDALEAKLKSN--PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQT-G---LGRT--GKLLAIH-- 96 (266)
Q Consensus 27 d~~~l~~~l~~~--~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~-~---~~~~--g~~~~~~-- 96 (266)
|+++|++.|+.. ++++++.++-..|..|..+.|.+.++++.++|++||++||.|.++. + |... .......
T Consensus 162 D~d~Le~~I~~~~~~~~~lV~a~itvn~~GGqpvs~~~m~~I~elA~~~Gl~Vi~DaAra~gna~fI~~re~~y~~~~i~ 241 (460)
T PRK13237 162 DLDKLQALIDEVGAENIAYICLAVTVNLAGGQPVSMANMRAVRELCDKHGIKVFFDATRCVENAYFIKEREEGYQDKSIK 241 (460)
T ss_pred CHHHHHHHhccccCCccCceEEEEecccCCCeeCCHHhHHHHHHHHHHcCCEEEEECcchhcChhhhcccccccCCCcHh
Confidence 899999999653 2455555555455554455888999999999999999999999993 2 1100 1000000
Q ss_pred ----cCCCCcCeee--ecccccCCchhhhhhee-cHHhhhccCCC----CCCCCCCCcHH-HHHHHHHHHHHHhhccHHH
Q psy6547 97 ----YEDVRPDIVI--LGKALSGGLYPISAVLA-DDEVMGTLVPG----THGSTYGGNPL-ACKLAMTALDVILEENMIE 164 (266)
Q Consensus 97 ----~~~~~~d~~~--~sK~~~~g~~~~g~~~~-~~~~~~~~~~~----~~~~~~~~~~~-~~~a~~~~l~~~~~~~~~~ 164 (266)
...-..|.++ ++|.++.+ . .|+++. ++++.+.++.. .-..++.+-.- -+.+....|.....+++.+
T Consensus 242 ei~~e~~s~aD~~t~S~~K~~~~~-~-GG~i~t~D~eL~~~~r~~~~~~eG~~tygg~~grd~~alAvgl~E~~~~~y~~ 319 (460)
T PRK13237 242 EIVHEMFSYADGCTMSGKKDCLVN-I-GGFLAMNDEELFDEAKELVVVYEGMPSYGGMAGRDMEAMAIGIEESVQYEYIE 319 (460)
T ss_pred HHhhhccCcCcEEEEeCCCCCCCC-C-ceEEEECCHHHHHHHHHhccccCCCcCCCChhhhHHHHHHhHHHhhchHHHHH
Confidence 0112356665 45777754 2 455555 66777776643 22334443222 3334444555555567888
Q ss_pred HHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEee------CccchHHHHHHHHH-HCCceec----------
Q psy6547 165 NAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSV------SAILEVYDVCIKMK-DAGLVTK---------- 227 (266)
Q Consensus 165 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~------~~~~~~~~~~~~l~-~~gi~~~---------- 227 (266)
+..+..++|.+.|.+ .+-+.+ .+..|+ -++++... ...+.+..++.+|- +-||=..
T Consensus 320 ~ri~~~~~l~~~L~~-~Gvpv~---~p~ggH---~v~vda~~~lph~~~~~~p~~al~~~ly~~~GiR~~e~g~~~~~~~ 392 (460)
T PRK13237 320 HRVGQVRYLGEKLLA-AGVPIV---EPVGGH---AVFLDARRFLPHLPQDQFPAQALAAELYIESGVRSMERGIVSAGRD 392 (460)
T ss_pred HHHHHHHHHHHHHHH-CCCcee---cCCCce---EEEEEhHHhCCCCCcccChHHHHHHHHHHHhCcCeEeecceecccC
Confidence 888899999999987 443222 123444 45554322 11345777777774 5566331
Q ss_pred cC-------CCCEEEEecc-CCCCHHHHHHHHHHHHHHHHHH
Q psy6547 228 PI-------SNNIIRLSPA-LNITEQELREGLDIIINTINTM 261 (266)
Q Consensus 228 ~~-------~~~~iR~~~~-~~~t~~~i~~~~~~l~~~~~~~ 261 (266)
|. .-..+|++.+ -.-|.+.+|...++|....++.
T Consensus 393 ~~~~~~~~~~~el~rlaiprr~yt~~h~~~v~~~~~~~~~~~ 434 (460)
T PRK13237 393 PKTGENHYPKLELVRLTIPRRVYTYAHMDVVADSVIKLYKHR 434 (460)
T ss_pred CCCCccCCCccceeeeccccccccHHHHHHHHHHHHHHHHhH
Confidence 10 1267899876 4558889999999998887653
No 362
>TIGR02618 tyr_phenol_ly tyrosine phenol-lyase. This model describes a group of tyrosine phenol-lyase (4.1.99.2) (beta-tyrosinase), a pyridoxal-phosphate enzyme closely related to tryptophanase (4.1.99.1) (see model TIGR02617). Both belong to the beta-eliminating lyase family (pfam01212)
Probab=98.89 E-value=2.6e-07 Score=80.97 Aligned_cols=225 Identities=15% Similarity=0.114 Sum_probs=136.2
Q ss_pred CHHHHHHHHhcCC--CEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccC----cCCcCccccc--cc-
Q psy6547 27 DVDALEAKLKSNP--NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTG----LGRTGKLLAI--HY- 97 (266)
Q Consensus 27 d~~~l~~~l~~~~--~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~----~~~~g~~~~~--~~- 97 (266)
|+++|++.|+... .++++.++...|..|..+++.+.++++.++|++||++||.|.++.. |......... ..
T Consensus 155 D~~~Le~aI~~~~~~~~~lV~~e~t~N~~GG~pvs~~~l~~I~elA~~~Gl~vi~DaAR~~gNA~~I~~re~g~~~~~i~ 234 (450)
T TIGR02618 155 DLKKLQKLIDEVGADKIPYICLAVTVNLAGGQPVSMANMREVRELCEAHGIKVFYDATRCVENAYFIKEREQGYEDKSIA 234 (450)
T ss_pred CHHHHHHHhccccCcccCceEEEEecccCCCeeCCHHHHHHHHHHHHHcCCEEEEEccchhhChhhhhcccccccCCCHH
Confidence 8999999996421 4566676666665544558999999999999999999999999931 1100000000 00
Q ss_pred -----CCCCcCeeeec--ccccCCchhhhh-he-ecHHhhhccCCCC----CCCCCCC-cHHHHHHHHHHHHHHhhccHH
Q psy6547 98 -----EDVRPDIVILG--KALSGGLYPISA-VL-ADDEVMGTLVPGT----HGSTYGG-NPLACKLAMTALDVILEENMI 163 (266)
Q Consensus 98 -----~~~~~d~~~~s--K~~~~g~~~~g~-~~-~~~~~~~~~~~~~----~~~~~~~-~~~~~~a~~~~l~~~~~~~~~ 163 (266)
..-..|.+++| |..+ .++|. ++ .++++.++++... -..++++ +.-.+.+...+|+..-.+.+.
T Consensus 235 ei~~e~~~~aD~~~~S~~Kd~~---~~~GG~l~~~d~~l~~k~r~~~~~~eG~~tyGgla~r~~~ala~gL~e~~~~~y~ 311 (450)
T TIGR02618 235 EILKEMMSYADGCTMSGKKDCL---VNIGGFLCMNDDEMFQSAKELVVVFEGMPSYGGLAGRDMEAMAIGIREAVDYEYI 311 (450)
T ss_pred HHHHHHhccCcEEEEeeccCCC---CCCceEEEeCCHHHHHHHHHHhhhcCCccccCchhhhhHHHHHHHHHHhhhHHHH
Confidence 01124554433 3334 34444 44 4778877766431 1123322 111344445556655555677
Q ss_pred HHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeC------ccchHHHHHHHHH-HCCceec---------
Q psy6547 164 ENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVS------AILEVYDVCIKMK-DAGLVTK--------- 227 (266)
Q Consensus 164 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~------~~~~~~~~~~~l~-~~gi~~~--------- 227 (266)
++.....++|.+.|.+ .+-+.+ .+..|+ .+.++...- ....+..++.+|- +-||=..
T Consensus 312 ~~r~~~a~~La~~L~~-~Gvpv~---~p~ggh---~V~vda~~~lph~~~~~~p~~al~~~ly~~~gir~~e~g~~~~~~ 384 (450)
T TIGR02618 312 EHRVKQVRYLGDKLKA-AGVPIV---EPVGGH---AVFLDARRFLPHIPQDQFPAQSLAASIYVETGVRSMERGIVSAGR 384 (450)
T ss_pred HHHHHHHHHHHHHHHH-CCCccc---CCCCcc---eEEEEhHHhCCCCChhhChHHHHHHHHHHHhCccEEeecceeccc
Confidence 8888889999999998 543222 234566 777765431 1345677777774 5566321
Q ss_pred -cC-------CCCEEEEecc-CCCCHHHHHHHHHHHHHHHHHH
Q psy6547 228 -PI-------SNNIIRLSPA-LNITEQELREGLDIIINTINTM 261 (266)
Q Consensus 228 -~~-------~~~~iR~~~~-~~~t~~~i~~~~~~l~~~~~~~ 261 (266)
|. .-..+|++.+ -.-|.+.+|...++|....++.
T Consensus 385 ~~~~~~~~~~~~el~rlaiprr~yt~~h~~~v~~~~~~~~~~~ 427 (450)
T TIGR02618 385 NNVTGEHHRPKLELVRLTIPRRVYTYAHMDVVADGIIKLYKHR 427 (450)
T ss_pred CCCCCcccCCccceeeeccccccccHhHHHHHHHHHHHHHhhH
Confidence 10 1267899876 4558889999999998887653
No 363
>PRK12462 phosphoserine aminotransferase; Provisional
Probab=98.89 E-value=1.9e-07 Score=80.30 Aligned_cols=199 Identities=13% Similarity=0.035 Sum_probs=134.8
Q ss_pred CCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCcccccccCCCCcCeeeeccccc-CCch
Q psy6547 38 NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALS-GGLY 116 (266)
Q Consensus 38 ~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~~~~~~~~~~d~~~~sK~~~-~g~~ 116 (266)
+++.+.+.++++.+.+|... + ++.+.+++++|+|-+-+ + .+.++.++.+ +.-+...-|+++ +|
T Consensus 141 ~~d~~~v~~t~NETstGv~~-~--------~~~~~~~~llvvD~sS~-~--~s~pid~~~~--dvi~agsQKnlgP~G-- 204 (364)
T PRK12462 141 DARAPFRHYVSNETVEGLQF-P--------DAAGLPDSPLIADMSSD-F--MSRPFDVEAY--GMVYAHAQKNLGPAG-- 204 (364)
T ss_pred CCCCcEEEEccCCCCceEec-C--------cccccCCCeEEEEcCch-h--hCCCCChHHc--cEEEeeccccCCCCc--
Confidence 44678888998888888874 2 33334689999997764 3 2344455544 233333669998 44
Q ss_pred hhhhheecHHhhhccCCC-----------CCCCCC-CCcHHHHHHHHHHHHHHhhc--c---HHHHHHHHHHHHHHHhhc
Q psy6547 117 PISAVLADDEVMGTLVPG-----------THGSTY-GGNPLACKLAMTALDVILEE--N---MIENAYKMGEIFRSELSS 179 (266)
Q Consensus 117 ~~g~~~~~~~~~~~~~~~-----------~~~~~~-~~~~~~~~a~~~~l~~~~~~--~---~~~~~~~~~~~l~~~l~~ 179 (266)
++.++.++++++..... ...+++ +++....-++..+++++.++ + +.++.++.++.+++.+++
T Consensus 205 -ltvvivs~~al~~~~~~~p~~ldy~~~~~~~s~~nTPpv~~iy~l~~~l~~i~~e~GGl~~~~~r~~~ka~~ly~~id~ 283 (364)
T PRK12462 205 -VTVAIIRRALLERVPDTLPPMLDFRTHVEHRSNYNTPPVFAIYVMALVLRWIRDEIGGVHAMRDINARKAAMLYATLDA 283 (364)
T ss_pred -eEEEEECHHHHhhccccCCchhhHHHHHhcCCCCCCchHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHh
Confidence 77888899888665431 122333 56666677788888888665 3 667777888888888887
Q ss_pred cccc--CC-CcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccC--CCCEEEEeccCCCCHHHHHHHHHHH
Q psy6547 180 PANK--SK-ASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPI--SNNIIRLSPALNITEQELREGLDII 254 (266)
Q Consensus 180 ~~~~--~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~--~~~~iR~~~~~~~t~~~i~~~~~~l 254 (266)
... .. +....+ +-+ -+.|.+.+ .....+|.+.+.++|+....+ ..+.+|.|+.-.++.|+++++++-+
T Consensus 284 -~~~~~~~~~~~~~R-S~m---nv~f~~~~--~~l~~~f~~~a~~~gl~~lkGhr~vgg~Ras~yna~~~e~v~~L~~fm 356 (364)
T PRK12462 284 -LNEVIDCHAHRAAR-STM---NVAFRFRQ--PRLDTLFKEQSTEAGFCGLSGHRSIGGIRASLYNAVSEQAVSRLCAFL 356 (364)
T ss_pred -CCCcccCCCChhhc-Ccc---eEEEEcCC--HHHHHHHHHHHHHCCCccccCCcccCceEEEcCCCCCHHHHHHHHHHH
Confidence 442 11 221112 223 35566655 445788999999999998654 3467999999999999999888888
Q ss_pred HHHHHH
Q psy6547 255 INTINT 260 (266)
Q Consensus 255 ~~~~~~ 260 (266)
.++-++
T Consensus 357 ~~f~~~ 362 (364)
T PRK12462 357 KDFAIR 362 (364)
T ss_pred HHHHHh
Confidence 877654
No 364
>KOG3846|consensus
Probab=98.84 E-value=4e-07 Score=74.63 Aligned_cols=221 Identities=13% Similarity=0.111 Sum_probs=145.0
Q ss_pred HHHHHHHHhcC-CCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCcccccccCCCCcCeee
Q psy6547 28 VDALEAKLKSN-PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVI 106 (266)
Q Consensus 28 ~~~l~~~l~~~-~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~~~~~~~~~~d~~~ 106 (266)
.+++-..|++. +++++|+...++--+|..+ ++.+|-..-+..|+++-+|=+|. +|. -+.-+..||++...++
T Consensus 201 teDILd~IEkngDeiA~v~fSGvqyYTGQ~F----di~aIT~Agq~kgc~VGfDLAHA-vgN--VpL~LHdWgVDFACWC 273 (465)
T KOG3846|consen 201 TEDILDTIEKNGDEIALVCFSGVQYYTGQYF----DIGAITFAGQFKGCLVGFDLAHA-VGN--VPLQLHDWGVDFACWC 273 (465)
T ss_pred HHHHHHHHHhcCCeEEEEEeecceeeccccc----chhhhhhcccCCCcEechhhhhh-hcC--CceEEeecCCceEEEe
Confidence 55666666553 4788888999998899998 89999977788899999999994 322 2334566888888888
Q ss_pred ecccccCCchhhhhheecHHhhhccCCC-------------------------CCCCCCCCcHHHHHHHHHHHHHHhh--
Q psy6547 107 LGKALSGGLYPISAVLADDEVMGTLVPG-------------------------THGSTYGGNPLACKLAMTALDVILE-- 159 (266)
Q Consensus 107 ~sK~~~~g~~~~g~~~~~~~~~~~~~~~-------------------------~~~~~~~~~~~~~~a~~~~l~~~~~-- 159 (266)
.-|.+++|--.+|.+...++......+. .-.....++-+...+...+|+....
T Consensus 274 SYKYlnaGaGgIgGlFvHekh~~~~~prl~GWwgh~~s~RF~Mdnvl~lipGa~GfRiSNPpi~~v~al~~SLe~F~q~~ 353 (465)
T KOG3846|consen 274 SYKYLNAGAGGIGGLFVHEKHTKESLPRLAGWWGHDPSKRFQMDNVLELIPGALGFRISNPPIIDVVALRSSLELFAQFN 353 (465)
T ss_pred eecccccCCCccceeeeehhhhcchhhHHhhhccCCcchhhhhccccccCccccccccCCCcHhHHHHHHhhHHHHHHhh
Confidence 8898873312355555555433222111 0011112334456666677776654
Q ss_pred -ccHHHHHHHHHHHHHHHhhcccccC-CC-----------cccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCcee
Q psy6547 160 -ENMIENAYKMGEIFRSELSSPANKS-KA-----------SFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVT 226 (266)
Q Consensus 160 -~~~~~~~~~~~~~l~~~l~~~~~~~-~~-----------~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~ 226 (266)
++++.+.--++.++...++...+.. .. +......|+ -+.+.+.. ...++.++|.++|++.
T Consensus 354 ~~~lRkrS~lLTgYleyL~k~~~g~~~~~rt~Kl~~~IiTP~~~~erGc---QLsl~Fss----p~~~vfqeL~krGv~~ 426 (465)
T KOG3846|consen 354 INELRKRSLLLTGYLEYLLKASKGYKHPLRTEKLFFTIITPTSTDERGC---QLSLYFSS----PTPKVFQELHKRGVIG 426 (465)
T ss_pred HHHHhhhhhhHHhHHHHHHHHhcccCchhhhcceeEEEeCCcccccccc---eEEEEeCC----CchHHHHHHHHcCeec
Confidence 3455555555555555555422221 11 111122355 55555544 4578999999999999
Q ss_pred ccCCCCEEEEec-cCCCCHHHHHHHHHHHHHHHHHHh
Q psy6547 227 KPISNNIIRLSP-ALNITEQELREGLDIIINTINTMA 262 (266)
Q Consensus 227 ~~~~~~~iR~~~-~~~~t~~~i~~~~~~l~~~~~~~~ 262 (266)
....++.||++| ++.++-.|+.+++..|.+++..+.
T Consensus 427 DkR~PNvIRvAPvpLYN~f~Dvy~f~n~L~e~~d~~e 463 (465)
T KOG3846|consen 427 DKRRPNVIRVAPVPLYNTFSDVYIFVNALNEAMDKLE 463 (465)
T ss_pred cccCCCceEeecchhhccHHHHHHHHHHHHHHHHHhh
Confidence 988899999987 688999999999999999987753
No 365
>cd01494 AAT_I Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis
Probab=98.78 E-value=2e-08 Score=77.05 Aligned_cols=103 Identities=21% Similarity=0.341 Sum_probs=69.8
Q ss_pred ccCCCCCCceeecCCC-----H--HHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEecccc
Q psy6547 12 EFGPHMPGYNIIPYND-----V--DALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQT 84 (266)
Q Consensus 12 ~~~~~~~~v~~~~~~d-----~--~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~ 84 (266)
.....+.+++.++.++ . +++++.. ..+++++++++++++++|... ++++|.++|+++|+++|+|++|.
T Consensus 58 ~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~g~~~----~~~~l~~~~~~~~~~li~D~a~~ 132 (170)
T cd01494 58 AAELAGAKPVPVPVDDAGYGGLDVAILEELK-AKPNVALIVITPNTTSGGVLV----PLKEIRKIAKEYGILLLVDAASA 132 (170)
T ss_pred HHHhcCCEEEEeccCCCCccchhhhhhhhcc-ccCceEEEEEecCcCCCCeEc----CHHHHHHHHHHcCCEEEEecccc
Confidence 3445566777776542 1 1344433 244789999999998888875 56999999999999999999997
Q ss_pred CcCCcCcccccccCCCCcCeeeec--ccccCCchhhhhhee
Q psy6547 85 GLGRTGKLLAIHYEDVRPDIVILG--KALSGGLYPISAVLA 123 (266)
Q Consensus 85 ~~~~~g~~~~~~~~~~~~d~~~~s--K~~~~g~~~~g~~~~ 123 (266)
++...... .......+|+++.| |++++ .+.|++++
T Consensus 133 ~~~~~~~~--~~~~~~~~d~~~~s~~K~~~~--~~~G~l~~ 169 (170)
T cd01494 133 GGASPAPG--VLIPEGGADVVTFSLHKNLGG--EGGGVVIV 169 (170)
T ss_pred cccccccc--cccccccCCEEEEEcccccCC--CceEEEEe
Confidence 65332211 11223457777755 99986 46787765
No 366
>PF02347 GDC-P: Glycine cleavage system P-protein; InterPro: IPR020580 This family consists of glycine cleavage system P-proteins (1.4.4.2 from EC) from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex (2.1.2.10 from EC (GDC) also annotated as glycine cleavage system or glycine synthase. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor, carbon dioxide is released and the remaining methylamin moiety is then transferred to the lipoamide cofactor of the H protein. GDC consists of four proteins P, H, L and T []. The reaction catalysed by this protein is: Glycine + lipoylprotein = S-aminomethyldihydrolipoylprotein + CO2 ; GO: 0004375 glycine dehydrogenase (decarboxylating) activity, 0055114 oxidation-reduction process; PDB: 1WYV_A 1WYT_C 1WYU_A.
Probab=98.76 E-value=2.6e-07 Score=80.57 Aligned_cols=217 Identities=14% Similarity=0.125 Sum_probs=115.3
Q ss_pred ccCCCCCCceeecCCCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccc-cCcCCcC
Q psy6547 12 EFGPHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQ-TGLGRTG 90 (266)
Q Consensus 12 ~~~~~~~~v~~~~~~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~-~~~~~~g 90 (266)
...+.+-+|+.++..+-.... ++++++|++..++. -|.+- ++++|.+++|++|.++++ .+- ..+ +
T Consensus 174 ~a~~~g~~iv~~~~~~~~~~d-----~~~~a~v~vq~Pn~-~G~~e----d~~~i~~~~h~~gal~~~-~ad~~aL---~ 239 (429)
T PF02347_consen 174 YAAPLGIEIVEVPLDEDGTTD-----DDDTAAVMVQNPNT-FGVFE----DIKEIADIAHAAGALVIV-GADPNAL---G 239 (429)
T ss_dssp HCCHCCEEEEEE-BBTTCSB------STTEEEEEEESS-T-TSB------THHHHHHHHHHTT-EEEE-CGGCCGC---C
T ss_pred hhhhCCeEEEEecccccCCcc-----ccCeEEEEeecCCC-CceEe----eHHHHHHHHHHcCCEEEE-ecCHHHH---h
Confidence 346677788888765311111 45789998886553 56553 699999999999999886 333 111 1
Q ss_pred cccccccCCCCcCeee-eccccc-----CCchhhhhheecHHhhhccCCC----------------------------CC
Q psy6547 91 KLLAIHYEDVRPDIVI-LGKALS-----GGLYPISAVLADDEVMGTLVPG----------------------------TH 136 (266)
Q Consensus 91 ~~~~~~~~~~~~d~~~-~sK~~~-----~g~~~~g~~~~~~~~~~~~~~~----------------------------~~ 136 (266)
-.-+-..+ ..|+++ .+|.|| || -..|++.+++++.+.+... +.
T Consensus 240 ~l~~Pge~--GADI~vg~~Q~fg~p~~~GG-P~~G~~a~~~~l~r~lPGRiVG~t~D~~G~~~~~ltLqtREQHIrReKA 316 (429)
T PF02347_consen 240 GLKSPGEY--GADIVVGEHQTFGIPMGFGG-PGAGFFAVREDLVRQLPGRIVGQTKDADGKRAFVLTLQTREQHIRREKA 316 (429)
T ss_dssp TC--GGGG--T-SEEEECCTTTT---CCC--S--EEEEE-GGGGGGS-S-EEEEEEBCCCSCCEEEE-GGGTCHHHGCCS
T ss_pred CcCChhhc--CccEEeeCCCCCcccCCCCC-CCeeeEEEhhhhhhhCCCceecccccccccceeeeccccccccccccch
Confidence 11111223 467766 566665 45 5678899999888877432 11
Q ss_pred CCCCCCcHHHH-HHHHHHHHHHhhc---cHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchH
Q psy6547 137 GSTYGGNPLAC-KLAMTALDVILEE---NMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEV 212 (266)
Q Consensus 137 ~~~~~~~~~~~-~a~~~~l~~~~~~---~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 212 (266)
.+.++++...+ .++..-+..++.+ ++-++...++.++.++|.+ .....+. ... |+-+..........
T Consensus 317 tSNIctnqaL~A~~a~~Yl~~~G~~GL~~iA~~~~~~A~yl~~~L~~-~~~~~~~-----~~~---f~e~v~~~~~~~~~ 387 (429)
T PF02347_consen 317 TSNICTNQALLALAAAIYLAYLGPEGLREIAERIHLNAHYLAERLKK-IYGLPFD-----NPF---FFEFVVVFSKDKEV 387 (429)
T ss_dssp TT---SS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-TTBECSS-----SSS---BSSEEEEESS-HHH
T ss_pred hhhhhhhHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHH-hcCcccC-----CCC---ceeeeeecCCcHHH
Confidence 23333344333 2344444555554 4667788899999999998 4221111 122 44444433212223
Q ss_pred HHHHHHHHHCCceeccCCCCEEEEeccCCCCHHHHHHHHHHH
Q psy6547 213 YDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDII 254 (266)
Q Consensus 213 ~~~~~~l~~~gi~~~~~~~~~iR~~~~~~~t~~~i~~~~~~l 254 (266)
.++.+++.+.|+.......+.+.+|+.-..|++|||++++.|
T Consensus 388 ~~l~~~~~~~gl~~~~~~~~~~li~~TE~~t~edid~lv~~f 429 (429)
T PF02347_consen 388 EELLKRGIEGGLNLRYPDDGALLICVTETRTKEDIDRLVEAF 429 (429)
T ss_dssp HHHHHTT----EEEGGG-SSEEEEE--TT--HHHHHHHHH--
T ss_pred HHHHHHHHhcCCCccccCCCeEEEEccCCCCHHHHHHHHhcC
Confidence 345555566676665555679999999999999999999864
No 367
>TIGR00461 gcvP glycine dehydrogenase (decarboxylating). This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment.
Probab=98.76 E-value=1e-06 Score=83.77 Aligned_cols=214 Identities=10% Similarity=0.084 Sum_probs=131.8
Q ss_pred CCCCCCceeecCCCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCccc
Q psy6547 14 GPHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLL 93 (266)
Q Consensus 14 ~~~~~~v~~~~~~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~ 93 (266)
.+.+-+|+.+ |+++|+..+ +++++++. +.+..|.+. ++++|.+++|++|.+++++--...++-. -
T Consensus 175 ~~~g~~v~~~---~~~~l~~~~----~~~~v~~q-~Pn~~G~ie----d~~~i~~~~h~~gal~~~~ad~~al~ll---~ 239 (939)
T TIGR00461 175 KPFGIEVIVV---DCSDIKKAV----DVFGCLLQ-YPATDGSIL----DYKQLIDALHSHKSLVSVAADLMALTLL---T 239 (939)
T ss_pred HhcCcEEEEE---cHHHHhhcC----CEEEEEEE-CCCCCeEEe----cHHHHHHHHHHcCCEEEEEechHHhCCc---C
Confidence 4667777777 455666555 46666554 334467664 8999999999999999986433322111 1
Q ss_pred ccccCCCCcCeee-eccccc-----CCchhhhhheecHHhhhccCCCCC----------------------------CCC
Q psy6547 94 AIHYEDVRPDIVI-LGKALS-----GGLYPISAVLADDEVMGTLVPGTH----------------------------GST 139 (266)
Q Consensus 94 ~~~~~~~~~d~~~-~sK~~~-----~g~~~~g~~~~~~~~~~~~~~~~~----------------------------~~~ 139 (266)
.-.. ...|+++ .+|.|+ || --.|++.+++++.+.+..... .++
T Consensus 240 ~Pge--~GaDi~vg~~q~fg~p~g~GG-P~aG~~a~~~~l~r~lPgrivG~s~D~~G~~~~~l~LqtReqhIrRekAtSN 316 (939)
T TIGR00461 240 PPGH--YGADIVLGSSQRFGVPMGYGG-PHAAFFAVKDEYNRKMPGRIVGVSKDALGNTALRLALQTREQHIRRDKATSN 316 (939)
T ss_pred CHHH--cCCcEEeeCCCccCCCCCCCC-CceeeeeecHhhHhhCCCCceeEEecCCCCccceeecccccccccccccCcc
Confidence 1112 3466665 445444 35 447888888887777643200 011
Q ss_pred CCCcHHHHH-HHHHHHHHHhhcc---HHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHH
Q psy6547 140 YGGNPLACK-LAMTALDVILEEN---MIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDV 215 (266)
Q Consensus 140 ~~~~~~~~~-a~~~~l~~~~~~~---~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 215 (266)
...+...++ .+..-+..+..++ +-+++..++.++.+.|.+ .+...... .. |-.|.+.-. ..+++++
T Consensus 317 ICt~qaL~a~~a~~Y~~~~G~~GL~~iA~~~~~~a~~l~~~L~~-~G~~~~~~-----~f---F~~~~v~~~-~~~~~~i 386 (939)
T TIGR00461 317 ICTAQVLLANVASSYCVYHGPKGLKNIARRIHSLTSILANGLEN-DPHELINK-----TW---FDTLTVKVG-NGISSEL 386 (939)
T ss_pred hhHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHh-CCCcccCC-----Cc---cceEEEEeC-CCCHHHH
Confidence 111221111 1121234445543 456777888889999888 55322211 11 223333220 1357899
Q ss_pred HHHHHHCCceeccCCCCEEEEeccCCCCHHHHHHHHHHHH
Q psy6547 216 CIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIII 255 (266)
Q Consensus 216 ~~~l~~~gi~~~~~~~~~iR~~~~~~~t~~~i~~~~~~l~ 255 (266)
.++++++||.++....+.+++|+.-.+|++|++.+++.+.
T Consensus 387 ~~~~~~~gi~l~~~~~~~i~~s~~E~~t~~di~~l~~~~~ 426 (939)
T TIGR00461 387 LKAAEEFNINLRAVDTTTVGIALDETTTKADVENLLKVFD 426 (939)
T ss_pred HHHHHHCCCeeeecCCCEEEEEeecCCCHHHHHHHHHHhc
Confidence 9999999999987767899999999999999999999994
No 368
>TIGR02617 tnaA_trp_ase tryptophanase, leader peptide-associated. Members of this family belong to the beta-eliminating lyase family (pfam01212) and act as tryptophanase (L-tryptophan indole-lyase). The tryptophanases of this family, as a rule, are found with a tryptophanase leader peptide (TnaC) encoded upstream. Both tryptophanases (4.1.99.1) and tyrosine phenol-lyases (EC 4.1.99.2) are found between trusted and noise cutoffs, but this model captures nearly all tryptophanases for which the leader peptide gene tnaC can be found upstream.
Probab=98.75 E-value=1.6e-06 Score=75.58 Aligned_cols=224 Identities=13% Similarity=0.101 Sum_probs=136.0
Q ss_pred CHHHHHHHHhcC--CCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEecccc---C-c------CCcCcccc
Q psy6547 27 DVDALEAKLKSN--PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQT---G-L------GRTGKLLA 94 (266)
Q Consensus 27 d~~~l~~~l~~~--~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~---~-~------~~~g~~~~ 94 (266)
|+++|++.|+.+ +++..+.++-.+|..|..++|.+.++++.++|++||+++++|.+-. . | +..+....
T Consensus 168 dl~~le~~I~~~g~~~i~~v~~tlt~N~~GGqpvslenlr~V~~la~~~GIplhLDgARl~nNA~fIk~rE~~a~~~si~ 247 (467)
T TIGR02617 168 DLEGLERGIEEVGPNNVPYIVATITCNSAGGQPVSLANLKAVYEIAKKYDIPVVMDSARFAENAYFIKQREAEYKNWSIE 247 (467)
T ss_pred CHHHHHHHHhhcCCCCceeeeeeEEEecCCCEEeCHHHHHHHHHHHHHcCCcEEEEhHHHHHHhhhhhhcchhhcCCCHH
Confidence 899999999753 2455555555566666777999999999999999999999997661 1 1 11121100
Q ss_pred -c--cc-CCCCcCeeeecccccCCchhhhhheecHH----hhhccCC----CCCCCCCCCcHH-HHHHHHHHHHHHhhcc
Q psy6547 95 -I--HY-EDVRPDIVILGKALSGGLYPISAVLADDE----VMGTLVP----GTHGSTYGGNPL-ACKLAMTALDVILEEN 161 (266)
Q Consensus 95 -~--~~-~~~~~d~~~~sK~~~~g~~~~g~~~~~~~----~~~~~~~----~~~~~~~~~~~~-~~~a~~~~l~~~~~~~ 161 (266)
. +. ...+--.+++||.++..+ .|+++++++ +.+..+. .....||++-.- -+.+....|+..-.++
T Consensus 248 eI~rE~~~~aDsvt~slsKglgApv--Gg~Lag~d~~~~~l~~~~~~~~i~~EGf~tYGGlagrd~ea~a~Gl~e~~~~~ 325 (467)
T TIGR02617 248 QITRETYKYADMLAMSAKKDAMVPM--GGLLCFKDDSFFDVYTECRTLCVVQEGFPTYGGLEGGAMERLAVGLYDGMNLD 325 (467)
T ss_pred HHHHHhhccCCEEEEEcCCCCCCcc--cceEEecchhHHHHHHHHHhhcccccCCcCcCchhHHHHHHHHhhhhhcccHH
Confidence 0 00 112334455889888441 334555544 3333332 234455543222 2444444566655677
Q ss_pred HHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEee------CccchHHHHHHHHH-HCCceec-------
Q psy6547 162 MIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSV------SAILEVYDVCIKMK-DAGLVTK------- 227 (266)
Q Consensus 162 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~------~~~~~~~~~~~~l~-~~gi~~~------- 227 (266)
+.++-....++|.++|++ . +++. ....|+ =+.++... ...+.+..++.+|- +-||=..
T Consensus 326 yl~~ri~qv~yl~~~L~~-~---Gvpi-~~~Ggh---av~iDa~~~lphip~~~fpa~al~~~ly~~~GiR~~e~G~~~~ 397 (467)
T TIGR02617 326 WLAYRINQVQYLVNGLEE-I---GVVC-QQAGGH---AAFVDAGKLLPHIPADQFPAHALACELYKVAGIRAVEIGSLLL 397 (467)
T ss_pred HHHHHHHHHHHHHHHHHh-C---CCcE-EecCcc---EEEEehhhhCCCCChhhCcHHHHHHHHHHHcCcceEeecceec
Confidence 888888889999999988 3 3444 333344 34443211 11345777777774 6566321
Q ss_pred ---cC-------CCCEEEEecc-CCCCHHHHHHHHHHHHHHHHH
Q psy6547 228 ---PI-------SNNIIRLSPA-LNITEQELREGLDIIINTINT 260 (266)
Q Consensus 228 ---~~-------~~~~iR~~~~-~~~t~~~i~~~~~~l~~~~~~ 260 (266)
|. .-..+|++.+ -.-|.+.+|...+++.+..++
T Consensus 398 ~rd~~~~~~~~~~~el~RlaipRrvyt~~h~d~v~~~~~~~~~~ 441 (467)
T TIGR02617 398 GRDPKTGKQLPCPAELLRLTIPRATYTQTHMDFIIEAFKHVKEN 441 (467)
T ss_pred ccCCCCCccCCCccceeeeccccccccHhHHHHHHHHHHHHHhh
Confidence 10 1267899876 456888999999999988665
No 369
>COG0403 GcvP Glycine cleavage system protein P (pyridoxal-binding), N-terminal domain [Amino acid transport and metabolism]
Probab=98.74 E-value=2.7e-06 Score=72.81 Aligned_cols=223 Identities=14% Similarity=0.124 Sum_probs=141.9
Q ss_pred cCCCCCCceeecCCCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEE--eccccCcCCcC
Q psy6547 13 FGPHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIA--DEVQTGLGRTG 90 (266)
Q Consensus 13 ~~~~~~~v~~~~~~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~--De~~~~~~~~g 90 (266)
..|++-+|+.++++|+++|+.. + +.++.++++..+...+... .+++++.+.+|++|.++++ |-.--++
T Consensus 185 a~~~g~~i~~~~~~d~~~l~~~-~-~~~~~gv~vQyP~~~G~~~----~d~~~l~~~~h~~~al~~v~aDplaL~L---- 254 (450)
T COG0403 185 AEGLGIEIEVVDADDLDDLESA-D-DGDVFGVLVQYPNTFGIVE----EDLRALIEAAHSAGALVIVAADPLALGL---- 254 (450)
T ss_pred cccCceEEEEeccchhhhhhhc-c-ccCeEEEEEecCCCCCccc----hhHHHHHHHHhhcCCEEEEEechhHhhc----
Confidence 4678899999999999999988 3 4478999988766433244 3799999999999988773 3222111
Q ss_pred cccccccCCCCcCeee-----eccccc-CCchhhhhheecHHhhhccCCC----------------------------CC
Q psy6547 91 KLLAIHYEDVRPDIVI-----LGKALS-GGLYPISAVLADDEVMGTLVPG----------------------------TH 136 (266)
Q Consensus 91 ~~~~~~~~~~~~d~~~-----~sK~~~-~g~~~~g~~~~~~~~~~~~~~~----------------------------~~ 136 (266)
.-+-.. ...|+++ |+=.++ || ...|+..+++++.+++... +.
T Consensus 255 -L~pPGe--~GADIvvG~~QrfGvPmgfGG-Phag~fA~~~~~~R~mPGRlVG~S~D~~G~~A~rLaLQTREQHIRReKA 330 (450)
T COG0403 255 -LKPPGE--FGADIVVGSAQRFGVPMGFGG-PHAGYFAVKDEFKRQMPGRLVGVSVDAAGKRAFRLALQTREQHIRREKA 330 (450)
T ss_pred -cCCccc--cCCceEEecCcccCCCcCCCC-cceeeeeEhHhHhhcCCCceeeeeecCCCCchhhhhHHHHHHHHhhhcc
Confidence 001111 3466666 555555 66 5678888888887776543 11
Q ss_pred CCCCCCcHHHHHHHH-HHHHHHhhc---cHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchH
Q psy6547 137 GSTYGGNPLACKLAM-TALDVILEE---NMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEV 212 (266)
Q Consensus 137 ~~~~~~~~~~~~a~~-~~l~~~~~~---~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 212 (266)
.++.+++...++.+. ..+-+++.+ ++..+..+...++.++|++ .+. ++. +....+ |-.|.+.-. ....
T Consensus 331 TSNICTnQaLlA~~As~y~~~hGp~GLk~iA~r~~~~a~~la~~L~~-~~~-g~~--~~~~~f---Fdt~~v~~~-~~~~ 402 (450)
T COG0403 331 TSNICTNQALLALAASMYAVYHGPQGLKEIAERIHRLAAYLAAGLKE-IGA-GVE--LVFDHF---FDTFTVRVP-EEVA 402 (450)
T ss_pred chhhhHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHhh-cCC-ceE--eccccc---eeeEEEecc-hhHH
Confidence 222333333322222 122233443 4667778888889898886 331 111 111133 433444331 1346
Q ss_pred HHHHHHHHHCCceeccCCCCEEEEeccCCCCHHHHHHHHHHHHHH
Q psy6547 213 YDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINT 257 (266)
Q Consensus 213 ~~~~~~l~~~gi~~~~~~~~~iR~~~~~~~t~~~i~~~~~~l~~~ 257 (266)
..+.++....|+-++......+-+++.-..|+++++.+++.+...
T Consensus 403 ~~l~~~~~~~G~~L~~~~~~~~~ia~tEt~t~~~i~~l~~~~~~~ 447 (450)
T COG0403 403 EALLAAAIAGGINLRRVDADTVLIALTETTTKEDIDALVAAFGGV 447 (450)
T ss_pred HHHHHHHHhcCCceeeecCCceEEEeecccCHHHHHHHHHHHhhh
Confidence 667777788899998877778889988899999999999988764
No 370
>COG0076 GadB Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism]
Probab=98.71 E-value=2e-07 Score=82.89 Aligned_cols=185 Identities=16% Similarity=0.128 Sum_probs=113.0
Q ss_pred CHHHHHHHHhcCCCEEE--EEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCC-cCc---ccccccCCC
Q psy6547 27 DVDALEAKLKSNPNICA--FMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGR-TGK---LLAIHYEDV 100 (266)
Q Consensus 27 d~~~l~~~l~~~~~~~~--i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~-~g~---~~~~~~~~~ 100 (266)
|++++++++++. +.. |+.+-....+|.+ +++++|.++|+++|+++++|.+++|+.. ... .|.+...++
T Consensus 194 d~~~l~~~i~~~--t~~g~vV~~aGtT~~G~i----Ddi~~ia~ia~~~~i~lHVDAA~GG~~~pf~~~~~~~~f~l~~v 267 (460)
T COG0076 194 DVDALEEAIDEN--TIGGVVVGTAGTTDTGSI----DDIEELADIAEEYGIWLHVDAAFGGFLLPFLEPDGRWDFGLEGV 267 (460)
T ss_pred CHHHHHHHHHhh--ccCceEEEEecCCCCCcc----CCHHHHHHHHHHcCCcEEEEccccceeecccCccchhhcCCCCc
Confidence 799999999653 333 5555555556665 5999999999999999999999988521 111 112222233
Q ss_pred CcCeeeecccccCCchhhhhheecHH--hhhccC---CCCC-----CCCCCCcHH--HHHHHHHHHHHHhhcc---HHHH
Q psy6547 101 RPDIVILGKALSGGLYPISAVLADDE--VMGTLV---PGTH-----GSTYGGNPL--ACKLAMTALDVILEEN---MIEN 165 (266)
Q Consensus 101 ~~d~~~~sK~~~~g~~~~g~~~~~~~--~~~~~~---~~~~-----~~~~~~~~~--~~~a~~~~l~~~~~~~---~~~~ 165 (266)
+--.+.+.|.+... ++.|+++.+.+ +.+.+. .+.. ..+..+++. ..++.+..++.++.++ +.++
T Consensus 268 dSIt~d~HK~g~aP-~~~G~il~rd~e~l~~~~~~~~~yl~~~~~~~~ti~~sr~~~~~~~~~~~l~~lG~eGy~~l~~~ 346 (460)
T COG0076 268 DSITVDGHKYGLAP-IGCGVVLFRDEEALRRILIFADYYLPGGGIPNFTILGSRPGRQALALYANLRRLGREGYRKLLDR 346 (460)
T ss_pred eEEEECcccccCCC-CCceEEEEECHHHhhhhhhcccccCCCCCcCceeEeeccchHHHHHHHHHHHHhCHhHHHHHHHH
Confidence 33333477988877 78888887654 333222 1111 111122222 4566677777776665 4555
Q ss_pred HHHHHHHHHHHhhccccc-CCCcccEEecCccceeeEEEEeeCccch-HHHHHHHHHHCCceec
Q psy6547 166 AYKMGEIFRSELSSPANK-SKASFKLSSGGLKKSINTLILSVSAILE-VYDVCIKMKDAGLVTK 227 (266)
Q Consensus 166 ~~~~~~~l~~~l~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~l~~~gi~~~ 227 (266)
..++++++.+++++ .+. ..+.. +.. |.+.|..++ ..+ ..+...++...|..+.
T Consensus 347 ~~~~a~~la~~l~~-~~~~e~~~~---p~l---~~V~fr~~~--~~~~~~~~~~~~~~~gw~v~ 401 (460)
T COG0076 347 TLELARYLAEELEK-LGDFELVNE---PEL---PIVAFRLKD--DEDTLADLSERLDRRGWQVP 401 (460)
T ss_pred HHHHHHHHHHHHHh-CCCcEeecC---Ccc---ceEEEEcCC--cccchhchHHHHHhcCceee
Confidence 66899999999998 542 22221 222 478888855 222 3445566666677665
No 371
>PF05889 SLA_LP_auto_ag: Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen); InterPro: IPR008829 This family consists of several eukaryotic and archaeal proteins which are related to the Homo sapiens soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen). Autoantibodies are a hallmark of autoimmune hepatitis, but most are not disease specific. Autoantibodies to soluble liver antigen (SLA) and to liver and pancreas antigen (LP) have been described as disease specific, occurring in about 30% of all patients with autoimmune hepatitis []. The function of SLA/LP is unknown, however, it has been suggested that the protein may function as a serine hydroxymethyltransferase and may be an important enzyme in the thus far poorly understood selenocysteine pathway []. The archaeal sequences Q8TXK0 from SWISSPROT and Q8TYR3 from SWISSPROT are annotated as being pyridoxal phosphate-dependent enzymes.; GO: 0016740 transferase activity; PDB: 2E7J_B 2E7I_B 2Z67_C 3HL2_D 3BC8_A 3BCA_A 3BCB_A.
Probab=98.63 E-value=5.9e-07 Score=76.76 Aligned_cols=220 Identities=11% Similarity=0.065 Sum_probs=116.8
Q ss_pred CHHHHHHHHhc-CCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcC-cc---cccccCC-C
Q psy6547 27 DVDALEAKLKS-NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTG-KL---LAIHYED-V 100 (266)
Q Consensus 27 d~~~l~~~l~~-~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g-~~---~~~~~~~-~ 100 (266)
|++++|+.+++ .++..+++++.+....+-.. +.+++|+++|++||++.++..+|+ ....- .. -+. ..| +
T Consensus 140 d~~~ie~~i~~~G~~~iLcvltttscfapr~~---D~i~~IakiC~~~~IPhlvNnAYg-vQ~~~~~~~i~~a~-~~GRv 214 (389)
T PF05889_consen 140 DLEAIEAKIEELGADNILCVLTTTSCFAPRLP---DDIEEIAKICKEYDIPHLVNNAYG-VQSSKCMHLIQQAW-RVGRV 214 (389)
T ss_dssp HHHHHHHHHHHHCGGGEEEEEEESSTTTTB-------HHHHHHHHHHHT--EEEEGTTT-TT-HHHHHHHHHHH-HHSTC
T ss_pred cHHHHHHHHHHhCCCCeEEEEEecCccCCCCC---ccHHHHHHHHHHcCCceEEccchh-hhHHHHHHHHHHHH-hcCCc
Confidence 58889999976 33556666666555455443 459999999999999999999993 31000 00 011 123 3
Q ss_pred CcCeeeecccccCCchhhhhheec-HHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHhh---ccHHHHHHHHHHHHHHH
Q psy6547 101 RPDIVILGKALSGGLYPISAVLAD-DEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILE---ENMIENAYKMGEIFRSE 176 (266)
Q Consensus 101 ~~d~~~~sK~~~~g~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~---~~~~~~~~~~~~~l~~~ 176 (266)
+.++-+..|-|--| ...+.+.+. +..++......-...+. +| ..-. ...|..++. ..++...++.-.++.++
T Consensus 215 da~vqS~dkNF~VP-vGgai~As~~~~~i~~vs~~YpGRas~-sp-~ld~-~itLl~LG~~g~~~ll~~r~~~f~~l~er 290 (389)
T PF05889_consen 215 DAFVQSTDKNFMVP-VGGAIMASFDPSGILAVSKEYPGRASA-SP-SLDL-FITLLSLGCTGYGALLKERKASFPYLKER 290 (389)
T ss_dssp SEEEEEHHHHHCEE-SSHEEEEESSHHHHHHHHHTSHSHBTS-HH-HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceeeeecCCCEEec-CCCcEEEecCHHHHHHHHHHhhhhhhc-cc-chHH-HHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 44444566755522 112233333 33443332211111111 11 1222 222333333 34666677777788888
Q ss_pred hhcccccCC--CcccEEecCccceeeEEEEeeCc---cchHHHHHHHHHHCCceec----cC---C--------CCEEEE
Q psy6547 177 LSSPANKSK--ASFKLSSGGLKKSINTLILSVSA---ILEVYDVCIKMKDAGLVTK----PI---S--------NNIIRL 236 (266)
Q Consensus 177 l~~~~~~~~--~~~~~~~~g~~~~~~~~~~~~~~---~~~~~~~~~~l~~~gi~~~----~~---~--------~~~iR~ 236 (266)
|++|..+.. +.. .+.... -+.+.+..-. ..+...|...|..+||... +. . ..++-+
T Consensus 291 l~~~aee~~e~ll~-~p~N~i---s~a~tl~~l~~~~~k~~~~lgs~Lf~R~VsG~RvV~~~~~~~tsh~~~yp~~Ylt~ 366 (389)
T PF05889_consen 291 LKKWAEEVGERLLE-TPRNHI---SMAFTLDTLYEISQKDGTFLGSMLFKRGVSGIRVVTPGGKKQTSHSSNYPCPYLTA 366 (389)
T ss_dssp HHHHHHHTTEEBSS-STT-SS---EEEEE-TTCCTCCSSHHHHHHHHHHHTTEESSEEEETSSCEEETTSS--SSSEEEE
T ss_pred HHHHHHHhhhhhcC-CCCCCe---eEEEECccchhhccchhhhHHHHHHhCCcccceeeccCCCcccccCCCCchHHHHH
Confidence 887433321 222 112223 3555554211 1245778889999977533 21 1 278888
Q ss_pred eccCCCCHHHHHHHHHHHHHHHH
Q psy6547 237 SPALNITEQELREGLDIIINTIN 259 (266)
Q Consensus 237 ~~~~~~t~~~i~~~~~~l~~~~~ 259 (266)
+..+..++||+|.++++|++.++
T Consensus 367 AsaiG~~~eevd~~v~rL~k~i~ 389 (389)
T PF05889_consen 367 ASAIGMTREEVDYFVKRLDKIIK 389 (389)
T ss_dssp EE-TT--HHHHHHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHhC
Confidence 88899999999999999999874
No 372
>COG1921 SelA Selenocysteine synthase [seryl-tRNASer selenium transferase] [Amino acid transport and metabolism]
Probab=98.59 E-value=3.3e-07 Score=78.34 Aligned_cols=137 Identities=13% Similarity=0.103 Sum_probs=98.3
Q ss_pred CCCCCCceeecC---CCHHHHHHHHhcCCCEEEEE--EccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCC
Q psy6547 14 GPHMPGYNIIPY---NDVDALEAKLKSNPNICAFM--VEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGR 88 (266)
Q Consensus 14 ~~~~~~v~~~~~---~d~~~l~~~l~~~~~~~~i~--~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~ 88 (266)
.-.+.+++.|-. ..+.+.+.+| .+++++++ .++.+..++++ ..+++.++|+++|+++++|.+-...-+
T Consensus 129 ~~aG~~l~EvG~tn~t~~~d~~~AI--ne~ta~llkV~s~~~~f~~~l-----~~~~l~~ia~~~~lpvivD~aSg~~v~ 201 (395)
T COG1921 129 RLAGAKLVEVGTTNRTHLKDYELAI--NENTALLLKVHSSNYGFTGML-----SEEELVEIAHEKGLPVIVDLASGALVD 201 (395)
T ss_pred HHcCCEEEEecccCcCCHHHHHHHh--ccCCeeEEEEeeccccccccc-----cHHHHHHHHHHcCCCEEEecCCccccc
Confidence 334555555553 2588999999 55566666 34344445665 889999999999999999988743211
Q ss_pred cCcccccccCCCCcCeeeec--ccccCCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHhhc
Q psy6547 89 TGKLLAIHYEDVRPDIVILG--KALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEE 160 (266)
Q Consensus 89 ~g~~~~~~~~~~~~d~~~~s--K~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~ 160 (266)
-.+-........+|++++| |-|+|. +.|.+++++++++.++.......+.......++..++|+.+...
T Consensus 202 -~e~~l~~~la~GaDLV~~SgdKllgGP--qaGii~GkKelI~~lq~~~l~Ralrv~K~tla~l~~aLe~y~~~ 272 (395)
T COG1921 202 -KEPDLREALALGADLVSFSGDKLLGGP--QAGIIVGKKELIEKLQSHPLKRALRVDKETLAALEAALELYLQP 272 (395)
T ss_pred -cccchhHHHhcCCCEEEEecchhcCCC--ccceEechHHHHHHHHhhhhhhhhhcCcHhHHHHHHHHHHHcCc
Confidence 1111122234578999988 788764 68999999999999987767777777888999999999988764
No 373
>KOG0258|consensus
Probab=98.59 E-value=6.8e-07 Score=75.40 Aligned_cols=217 Identities=17% Similarity=0.169 Sum_probs=122.5
Q ss_pred CHHHHHHHHhcCC---CEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccC-cCCcC-cccccc----c
Q psy6547 27 DVDALEAKLKSNP---NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTG-LGRTG-KLLAIH----Y 97 (266)
Q Consensus 27 d~~~l~~~l~~~~---~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~-~~~~g-~~~~~~----~ 97 (266)
|.++|++.+++.. +++++++-.+.|++|.+ .+++.+++|..+|.++|++|+.||+|-. ....+ .+.++. .
T Consensus 199 d~~el~~~~~eA~k~i~~r~lvvINPGNPTGqv-ls~e~ie~i~~fa~~~~l~llaDEVYQ~Nvy~~~skFhSfKKvl~e 277 (475)
T KOG0258|consen 199 DVAELERSVDEARKGINPRALVVINPGNPTGQV-LSEENIEGIICFAAEEGLVLLADEVYQDNVYTTGSKFHSFKKVLHE 277 (475)
T ss_pred CHHHHHHHHHHHhccCCceEEEEECCCCccchh-hcHHHHHHHHHHHHHcCeEEechHHHHhhccCCCcchHhHHHHHHH
Confidence 6888888886532 55666655556668887 8999999999999999999999999944 22233 222221 1
Q ss_pred CC-CCc------Ceeeeccccc--CCchhhhhhee---cHHhhhccCC---CCCCCCCCCcHHHHHHH----------HH
Q psy6547 98 ED-VRP------DIVILGKALS--GGLYPISAVLA---DDEVMGTLVP---GTHGSTYGGNPLACKLA----------MT 152 (266)
Q Consensus 98 ~~-~~~------d~~~~sK~~~--~g~~~~g~~~~---~~~~~~~~~~---~~~~~~~~~~~~~~~a~----------~~ 152 (266)
.+ ..+ .+.+.||++. .| .|.|++-. +++..+.+.. .....+.. +++.. ..
T Consensus 278 mg~~~~~~v~L~SfhSvSKGy~gECG-~RGGYmEv~n~~prv~~qi~Kl~si~lc~~V~----GQ~~vdl~VnPP~Pgd~ 352 (475)
T KOG0258|consen 278 MGNPYPDNVSLASFHSVSKGYMGECG-QRGGYMESLNRDPRVKQQIKKLASIKLCPQVS----GQKLVDLVVNPPKPGDP 352 (475)
T ss_pred hcCccCCceEEEeeecccccceeeec-ccCCeeecccCChhHHHHHHHHHhhhhcCCcc----chhhhceecCCCCCCCc
Confidence 11 112 2333789877 68 88888642 3333333211 11111110 01000 00
Q ss_pred H--HHHHhhccHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEE---EeeCc-------cchHHH-HHHHH
Q psy6547 153 A--LDVILEENMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLI---LSVSA-------ILEVYD-VCIKM 219 (266)
Q Consensus 153 ~--l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~-------~~~~~~-~~~~l 219 (266)
+ +..-+.+.+++.++.+++.+.+.+.+ +.. +.. .+..|. |..|. ++... +..++. .|.+|
T Consensus 353 Sy~~~~~Ekd~il~~l~~ra~l~~~~~ns-~~g--i~c-n~~qGA---MY~fP~i~lP~kaie~A~~~~~~PD~FYc~~L 425 (475)
T KOG0258|consen 353 SYDLFSSEKDGILSSLRSRAKLTEDAFNS-LEG--ISC-NPVQGA---MYLFPQISLPPKAIEAAKALGIAPDEFYCLKL 425 (475)
T ss_pred chhhhhhhhHhHHHHHHHHhHHHHHHHhh-cCc--eee-ccCccc---eeecccccCCHHHHHHHHHhCCCCcHHHHHHH
Confidence 1 11113456888888899999998888 443 222 233455 55543 33310 222333 35666
Q ss_pred H-HCCceeccCCC-------CEEEEeccCCCCHHHHHHHHHHHHHHHHHH
Q psy6547 220 K-DAGLVTKPISN-------NIIRLSPALNITEQELREGLDIIINTINTM 261 (266)
Q Consensus 220 ~-~~gi~~~~~~~-------~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~ 261 (266)
+ .-||.+.|+++ -.+|.. ..... + +.++++.++=++.
T Consensus 426 Le~tGIcvVPGSGFGQ~~GtyH~R~T---iLp~~-~-~~i~~~~~fH~~f 470 (475)
T KOG0258|consen 426 LEATGICVVPGSGFGQKEGTYHFRTT---ILPPG-L-EIIEKFKKFHAEF 470 (475)
T ss_pred HHhcCeEEecCCCCCCCCceeEEEEe---ecCch-h-HHHHHHHHHHHHH
Confidence 6 55999999732 346666 22333 4 7777777665443
No 374
>KOG1383|consensus
Probab=98.50 E-value=1.9e-05 Score=68.30 Aligned_cols=228 Identities=16% Similarity=0.179 Sum_probs=140.2
Q ss_pred CCCceeecCC------CHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHh-cCCEEEEeccccCcCCc
Q psy6547 17 MPGYNIIPYN------DVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQ-YNVLFIADEVQTGLGRT 89 (266)
Q Consensus 17 ~~~v~~~~~~------d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~-~g~~li~De~~~~~~~~ 89 (266)
..++..|++. |+..+.+.+ ++++..++.+-.+.+.|.+ +++++|.++..+ +++++.+|.+-.||-..
T Consensus 191 ~v~l~~V~~~~~~~~~D~~k~~~~i--~eNti~lv~~~~~~p~G~~----e~ve~l~~l~~e~w~ipiHvDa~~GgFi~p 264 (491)
T KOG1383|consen 191 EVELREVPLDEGDYRVDPGKVVRMI--DENTIMLVGSLPNFPTGEI----EDVEKLADLLLEIWDIPIHVDACLGGFINP 264 (491)
T ss_pred EEEEEeeeccccceEecHHHHHHHh--ccceEEEEEEcCCCCccch----hhHHHHHHHHHHHhCCceeecccCcccccc
Confidence 3345555544 799999999 6678999988777777776 599999999999 99999999999887432
Q ss_pred -CcccccccCCC-CcCeee----ecc-ccc-CCchhhhhheecH-Hhh-hccC-------CCCCCCCCCCcHHH--HHHH
Q psy6547 90 -GKLLAIHYEDV-RPDIVI----LGK-ALS-GGLYPISAVLADD-EVM-GTLV-------PGTHGSTYGGNPLA--CKLA 150 (266)
Q Consensus 90 -g~~~~~~~~~~-~~d~~~----~sK-~~~-~g~~~~g~~~~~~-~~~-~~~~-------~~~~~~~~~~~~~~--~~a~ 150 (266)
+.. ....++. .|-+.+ -.| +|. .| ++|++-+. ++. ..+. .....-|..+|..+ .++.
T Consensus 265 ~~~~-~~~~fdFr~p~V~Sisa~~HKYGl~~~G---~~~vl~r~k~~~~~q~~~~~~w~Gg~y~s~TlngSR~g~~va~~ 340 (491)
T KOG1383|consen 265 AGYL-NEEEFDFRVPGVTSISADGHKYGLAPAG---SSWVLYRNKELLPHQLFFHTDWLGGIYASPTLNGSRPGSQVAAQ 340 (491)
T ss_pred cccc-CccccccCCCCceeEeeccceeeeeecC---cEEEEEcccccccceEEEeccccCccccCcccccCCcccHHHHH
Confidence 221 1122332 222222 223 333 44 66766543 222 1111 00112222333332 3344
Q ss_pred HHHHHHHhhccH---HHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceec
Q psy6547 151 MTALDVILEENM---IENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTK 227 (266)
Q Consensus 151 ~~~l~~~~~~~~---~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~ 227 (266)
.+++-.+..+++ .+++.+....+++.+++ +....+. |. |.+.|........+-.++...|.+.|..+-
T Consensus 341 wa~~~~lG~eGY~~~~~~ive~~~~l~egie~-i~~i~i~------gk--p~vs~~~~~s~~~~i~elsd~l~~~GW~ln 411 (491)
T KOG1383|consen 341 WAALMSLGEEGYRENTQNIVETARKLREGIEN-IKGIKIV------GK--PLVSFILFGSNDVNIFELSDLLRKKGWILN 411 (491)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhc-cccceec------CC--CcEEEEEccCCccchhhhhHHHHhcCcCcc
Confidence 455544555554 45566778888888888 5542211 11 467777666445677889999999999876
Q ss_pred cC-CCCEEEEeccCCCCHHH-HHHHHHHHHHHHHHHhh
Q psy6547 228 PI-SNNIIRLSPALNITEQE-LREGLDIIINTINTMAA 263 (266)
Q Consensus 228 ~~-~~~~iR~~~~~~~t~~~-i~~~~~~l~~~~~~~~~ 263 (266)
.. .+..+.++....+.+++ .++++..|+++++++..
T Consensus 412 alq~P~a~Hi~vt~~~~~~~~A~~~v~Di~~~~~el~~ 449 (491)
T KOG1383|consen 412 ALQFPAAIHICVTRVHAREDVADRFVADIRKVVEELKS 449 (491)
T ss_pred ccCCCCceEEEEEeeeccHHHHHHHHHHHHHHHHHHHh
Confidence 32 23466666555555555 58889999999888753
No 375
>PF04864 Alliinase_C: Allinase; InterPro: IPR006948 Allicin is a thiosulphinate that gives rise to dithiines, allyl sulphides and ajoenes, the three groups of active compounds in Allium species. Allicin is synthesised from sulphoxide cysteine derivatives by alliinase, whose C-S lyase activity cleaves C(beta)-S(gamma) bonds. It is thought that this enzyme forms part of a primitive plant defence system [].; GO: 0016846 carbon-sulfur lyase activity; PDB: 1LK9_B 2HOX_C 2HOR_A 3BWO_D 3BWN_B.
Probab=98.49 E-value=2e-07 Score=77.75 Aligned_cols=193 Identities=16% Similarity=0.107 Sum_probs=112.3
Q ss_pred EEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCcccccccCCCCcCeeeeccccc-CCchhhhh
Q psy6547 42 CAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALS-GGLYPISA 120 (266)
Q Consensus 42 ~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~~~~~~~~~~d~~~~sK~~~-~g~~~~g~ 120 (266)
-.=++++++||.|.+- + .+.+.-+..+|.|-+|.. .+-.+.. ...+.+.=+-++||.-| +| .|+||
T Consensus 139 ~IElVTSPNNPDG~lr------~---~V~~g~~~k~I~D~AYYW--PhyTpI~-~~aD~DiMLFT~SK~TGHAG-SR~GW 205 (363)
T PF04864_consen 139 YIELVTSPNNPDGQLR------E---AVLNGSSGKVIHDLAYYW--PHYTPIT-APADHDIMLFTLSKLTGHAG-SRFGW 205 (363)
T ss_dssp EEEEEESS-TTT---------------SSTTTEEEEEEE-TT-S--TTTS----S-B--SEEEEEHHHHCS-GG-G-EEE
T ss_pred eEEEEeCCCCCccccc------c---hhcCCCCcceeeeeeeec--ccccccC-CCCCCceEEEEEecccCccc-cccce
Confidence 3334666777777642 2 233455566899999942 2222211 11222333445899999 88 99999
Q ss_pred heec-HHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHhh----c----cH----HHHHHHHHHHHHHHhhccccc----
Q psy6547 121 VLAD-DEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILE----E----NM----IENAYKMGEIFRSELSSPANK---- 183 (266)
Q Consensus 121 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~----~----~~----~~~~~~~~~~l~~~l~~~~~~---- 183 (266)
.+.. +++.+++..+...+|.+.|.=+|.-++..|+.+-. + ++ .+.++++.+.|++.+.. -..
T Consensus 206 AlVKD~~Va~kM~~y~~lnTiGvS~dsQLRa~kiLk~v~~~~~~~~~~~~~F~f~~~~M~~RW~~L~~~~~~-S~rFSLq 284 (363)
T PF04864_consen 206 ALVKDEEVAKKMTKYMELNTIGVSRDSQLRALKILKVVLDGYGTEKGTEDIFHFGYSTMRERWEKLRAAVSA-SKRFSLQ 284 (363)
T ss_dssp EEES-HHHHHHHHHHHHHHCSS--HHHHHHHHHHHHHHHHHCCHHTTTTSHHHHHHHHHHHHHHHHHHHHCC-SSSEEE-
T ss_pred eeecCHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHhcccCCCCccchHHHHHHHHHHHHHHHHHHHHh-cCceecC
Confidence 8874 46667776666677788887777777777766532 1 22 34456666667666664 110
Q ss_pred -------CCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccC-----CCCEEEEeccCCCCHHHHHHHH
Q psy6547 184 -------SKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPI-----SNNIIRLSPALNITEQELREGL 251 (266)
Q Consensus 184 -------~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~-----~~~~iR~~~~~~~t~~~i~~~~ 251 (266)
..+.......+. |.|+.|... . .++....|++.||..+.+ +..++|+| ...++++.+.++
T Consensus 285 ~~~~~yC~ff~~~~~psPa---fAWlkCe~e--e-d~DC~~~l~~~~I~tr~G~~fga~~ryVRlS--ml~~~d~Fd~l~ 356 (363)
T PF04864_consen 285 KFSPQYCNFFKRVREPSPA---FAWLKCERE--E-DEDCYAVLREAKIITRSGVLFGADSRYVRLS--MLKRDDDFDQLL 356 (363)
T ss_dssp --SCEEETTTTCEEE---S---EEEEEESSC--G-GSSHHHHHHCTTEEEEEGGGGTS-TTEEEEE--SSS-HHHHHHHH
T ss_pred cCCchhccccccccCCCCC---eEEEecCCc--c-cccHHHHHHhCCcccCCCCccCCCCCeEEEe--ccCCHHHHHHHH
Confidence 112221234566 899999862 2 255677788999998865 56899999 778999999999
Q ss_pred HHHHH
Q psy6547 252 DIIIN 256 (266)
Q Consensus 252 ~~l~~ 256 (266)
++|..
T Consensus 357 ~rL~~ 361 (363)
T PF04864_consen 357 ERLSK 361 (363)
T ss_dssp HHHHC
T ss_pred HHHHh
Confidence 99875
No 376
>KOG2040|consensus
Probab=98.41 E-value=2.2e-05 Score=70.55 Aligned_cols=236 Identities=16% Similarity=0.105 Sum_probs=147.1
Q ss_pred cccCCCCCCceeecCC-----CHHHHHHHHhcCC-CEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEecccc
Q psy6547 11 NEFGPHMPGYNIIPYN-----DVDALEAKLKSNP-NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQT 84 (266)
Q Consensus 11 ~~~~~~~~~v~~~~~~-----d~~~l~~~l~~~~-~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~ 84 (266)
.+.+..+.+|+.|... |..+|++..+++. +.++++++.+. +.|.. .+.++.++++.++||.-+..|.+-.
T Consensus 645 ASA~MagmkvvpV~~~~~G~id~~dLk~kaekh~~~Laa~MvTYPS-T~Gvf---E~~i~d~cd~iHehGGQVYlDGANM 720 (1001)
T KOG2040|consen 645 ASAAMAGMKVVPVGCDANGNIDMVDLKAKAEKHKDNLAALMVTYPS-THGVF---EEGIDDICDIIHEHGGQVYLDGANM 720 (1001)
T ss_pred hhHHhcCCEEEEeeccCCCCccHHHHHHHHHHhhhhhheeEEeccc-ccccc---cccHHHHHHHHHhcCCEEEecCCCc
Confidence 3667778888888743 7899999988765 77888877544 34443 4678999999999999999997762
Q ss_pred ----CcCCcCcccccccCCCCcCeeeeccccc----CCchhhhhheecHHhhhccCCCCC-----------CCCC----C
Q psy6547 85 ----GLGRTGKLLAIHYEDVRPDIVILGKALS----GGLYPISAVLADDEVMGTLVPGTH-----------GSTY----G 141 (266)
Q Consensus 85 ----~~~~~g~~~~~~~~~~~~d~~~~sK~~~----~g~~~~g~~~~~~~~~~~~~~~~~-----------~~~~----~ 141 (266)
|+-+.|. +|-++.=.-+.|+|+ ||.-.+|-+...+.+...+..... ..+. .
T Consensus 721 NAqVGlc~pGd------~GaDV~HLNLHKTFcIPHGGGGPg~gPIgVK~HLapfLP~HpVvs~~~~~~~~~~gsVsaaP~ 794 (1001)
T KOG2040|consen 721 NAQVGLCRPGD------IGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSPGRPEDTSPVGSVSAAPW 794 (1001)
T ss_pred cceecccCCcc------ccccceeecccceeeecCCCCCCCCCccchhhhccccCCCCCccCCCCCCCCCCccceeccCC
Confidence 2212221 222222233778776 331445556566655554432211 1111 2
Q ss_pred CcHHHHHHHHHHHHHHhhccHHHH---HHHHHHHHHHHhhcccccCCCcccEEec-CccceeeEEEEee---CccchHHH
Q psy6547 142 GNPLACKLAMTALDVILEENMIEN---AYKMGEIFRSELSSPANKSKASFKLSSG-GLKKSINTLILSV---SAILEVYD 214 (266)
Q Consensus 142 ~~~~~~~a~~~~l~~~~~~~~~~~---~~~~~~~l~~~l~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~---~~~~~~~~ 214 (266)
+|.......++-++.+...++... ..-++.++.++|++ -....+.. ..+. +. =|.+++.+ ..+.++.+
T Consensus 795 Gsa~ILpISwaYikmMG~~GL~~as~~AiLNaNYMakRLe~-hYkil~~~-~~~~vaH---EFIlD~r~fK~~agieavD 869 (1001)
T KOG2040|consen 795 GSALILPISWAYIKMMGSGGLKDASKIAILNANYMAKRLES-HYKILFRG-ENGLVAH---EFILDLRPFKKTAGIEAVD 869 (1001)
T ss_pred CcceeehhHHHHHHHhcccccchhhHHHhhhhHHHHHHHhh-ccceeEec-CCcceee---eeeeechhhccccCCcHHH
Confidence 344445566777777777654332 23367778888886 11111111 1111 11 23333332 12578999
Q ss_pred HHHHHHHCCceec---cCCCCEEEEeccCCCCHHHHHHHHHHHHHHHHHH
Q psy6547 215 VCIKMKDAGLVTK---PISNNIIRLSPALNITEQELREGLDIIINTINTM 261 (266)
Q Consensus 215 ~~~~l~~~gi~~~---~~~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~ 261 (266)
++++|.+.|+..- ..-.+++++-|.-.-+.+++|++++++-++-+++
T Consensus 870 vAKRL~DYgFHaPTmswPV~gtLMIEPTESE~k~ElDRfcdAliSIreEI 919 (1001)
T KOG2040|consen 870 VAKRLMDYGFHAPTMSWPVAGTLMIEPTESEDKAELDRFCDALISIREEI 919 (1001)
T ss_pred HHHHHHhccCCCCccccccCCceEeccCccccHHHHHHHHHHHHHHHHHH
Confidence 9999999999752 2346899999988889999999999998776654
No 377
>KOG0628|consensus
Probab=98.38 E-value=1.8e-05 Score=68.32 Aligned_cols=225 Identities=13% Similarity=0.108 Sum_probs=119.2
Q ss_pred CHHHHHHHHhcCC--CEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCcccccccCCCC-cC
Q psy6547 27 DVDALEAKLKSNP--NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVR-PD 103 (266)
Q Consensus 27 d~~~l~~~l~~~~--~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~~~~~~~~~-~d 103 (266)
+.+.|+++++++. ..--+++.-+.+++|. ..-+.+.+|..+|+++|++|.+|.+|.|-...-+.+..-..|+. .|
T Consensus 218 r~~~L~~AIe~D~arGlIPf~v~at~GTT~~--ca~D~l~elg~Vc~~~glWLHVDAAYAGsa~iCpE~r~l~rGie~aD 295 (511)
T KOG0628|consen 218 RGDTLRKAIEEDIARGLIPFFVCATLGTTSS--CAFDELEELGPVCREEGLWLHVDAAYAGSAFICPEFRYLMRGIEYAD 295 (511)
T ss_pred CHHHHHHHHHHHHhCCCccEEEEEeecCccc--cccccHHHhcchhhhcCEEEEeehhhccccccCHHHHHHhhcchhhc
Confidence 4677777776532 2333344444554544 45689999999999999999999999763221111111111211 11
Q ss_pred e--eeeccccc-----------CCchhhhhhe-ecHHhhhc-----cCCCCCCCCCCCcHHHHHHHHHHHHHHhhccHHH
Q psy6547 104 I--VILGKALS-----------GGLYPISAVL-ADDEVMGT-----LVPGTHGSTYGGNPLACKLAMTALDVILEENMIE 164 (266)
Q Consensus 104 ~--~~~sK~~~-----------~g~~~~g~~~-~~~~~~~~-----~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~ 164 (266)
- ...+|++- .| ..+.-.. +.+-.++. ...+.+++---+-.+-..-..-.++.+..+++++
T Consensus 296 Sfn~n~hK~~~vnfDCs~lWvkd~-~~~~~~~~vdp~yL~h~~~~~~~Dyrhwqipl~rRfRSLKlWfv~R~~Gve~lq~ 374 (511)
T KOG0628|consen 296 SFNFNPHKWLLVNFDCSPLWVKDG-TKLSRAFNVDPLYLKHAYQGSAPDYRHWQIPLGRRFRSLKLWFVLRSYGVENLQN 374 (511)
T ss_pred cccCChhheeEEeeeeecceeecC-ceeeeeeecChHhhcchhhccCCCccccccccccchhhHHHHHHHHHHhHHHHHH
Confidence 0 01334332 12 1111111 11111111 1122333333333333444455556666677777
Q ss_pred HHHH---HHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHC-CceeccC---CCCEEEEe
Q psy6547 165 NAYK---MGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDA-GLVTKPI---SNNIIRLS 237 (266)
Q Consensus 165 ~~~~---~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~-gi~~~~~---~~~~iR~~ 237 (266)
++++ +++.+.+.+.+ -...-+.. .+-.|+ +-|.+... +...+++.+++.+. .|.+.|. +.-.+|++
T Consensus 375 ~iR~h~~La~~fe~lv~~-d~~FE~~~-~~~lgL----vcFRlk~~-N~~ne~Ll~~in~~g~i~l~~~~l~gk~vlRf~ 447 (511)
T KOG0628|consen 375 YIREHVRLAKEFETLVRA-DPRFEIVN-KRILGL----VCFRLKGD-NEINEALLNRLNSSGRIHLVPASLHGKFVLRFA 447 (511)
T ss_pred HHHHHHHHHHHHHHHhhc-CCcceeec-ccccce----eEEeecCC-cHHHHHHHHHHHhcCcEEEEEeeecceEEEEEE
Confidence 7665 44444444444 11111111 222343 55555543 34567888888755 6666654 55679998
Q ss_pred cc-CCCCHHHHHHHHHHHHHHHHHH
Q psy6547 238 PA-LNITEQELREGLDIIINTINTM 261 (266)
Q Consensus 238 ~~-~~~t~~~i~~~~~~l~~~~~~~ 261 (266)
.. ..++++|++++.+.|.+..+++
T Consensus 448 V~s~~t~~~di~~a~~~I~~~a~~l 472 (511)
T KOG0628|consen 448 VCSPLTNESDIDEAWKIIFEAADEL 472 (511)
T ss_pred ecCCCCcHHHHHHHHHHHHHHHHHH
Confidence 75 4567888999999999887774
No 378
>PF03841 SelA: L-seryl-tRNA selenium transferase; InterPro: IPR018319 In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This family describes SelA. A close homologue of SelA is found in Helicobacter pylori, but all other required elements are missing and the protein is shorter at the N terminus than SelA from other species. The trusted cut-off is set above the score generated for Helicobacter pylori putative SelA.; PDB: 2AEV_A 2AEU_A.
Probab=98.30 E-value=6.4e-07 Score=75.96 Aligned_cols=137 Identities=15% Similarity=0.153 Sum_probs=57.9
Q ss_pred CCCceeecCC---CHHHHHHHHhcCCCEEEEEEcc--ccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccC------
Q psy6547 17 MPGYNIIPYN---DVDALEAKLKSNPNICAFMVEP--IQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTG------ 85 (266)
Q Consensus 17 ~~~v~~~~~~---d~~~l~~~l~~~~~~~~i~~~~--~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~------ 85 (266)
+..++.|-.. .+++.+++| ++++++++-.. ++...|. -..-.++++.+++++|++++++|-.-..
T Consensus 112 Ga~lvEVGttN~t~~~Dye~AI--~e~Ta~ll~Vh~Sn~~i~GF--t~~~~~~el~~la~~~~lp~i~DlgsG~l~dl~~ 187 (367)
T PF03841_consen 112 GARLVEVGTTNRTHLSDYEKAI--TENTAALLKVHTSNFRIQGF--TGEVSLEELAELAKEHGLPVIVDLGSGLLVDLSP 187 (367)
T ss_dssp -----------------------------------------------------HHHHHHHHHT--EEEE-TTHHHHHHHT
T ss_pred cccccccccccccccccccccc--cccccccccccccccccccc--cccccHHHHHHHHhhcCCcEEEECCCCCCcCccc
Confidence 3444444432 377888888 66788887333 3322222 1223899999999999999999966622
Q ss_pred cCCcCcccccccCCCCcCeeeec--ccccCCchhhhhheecHHhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHhh
Q psy6547 86 LGRTGKLLAIHYEDVRPDIVILG--KALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILE 159 (266)
Q Consensus 86 ~~~~g~~~~~~~~~~~~d~~~~s--K~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~ 159 (266)
++-.+++-........+|+++|| |-++|. ..|.+++.+++++.++.......+-..-+.+++..++|+.+..
T Consensus 188 ~gl~~Ep~v~~~~~~GaDlV~fSGdKlLGGP--QaGiI~Gkk~lI~~lk~~pl~RalrvdK~tla~L~atL~~Y~~ 261 (367)
T PF03841_consen 188 YGLPDEPTVQEYLAAGADLVTFSGDKLLGGP--QAGIIVGKKELIEKLKKHPLGRALRVDKLTLAALEATLRLYLD 261 (367)
T ss_dssp T----------CCCCT-SEEEEETTSSSSS---S-EEEEEEHHHHHHHHHHHHTTT-B--HHHHHHHHHHHHH---
T ss_pred ccCccccHHHHHhhcCCCEEEEECCCcCCCC--CeEEEEeCHHHHHHHhhCCCcceEeeCHHHHHHHHHHHHHHHH
Confidence 12122222333345679999988 788765 5799999999999887655566667778889999999987654
No 379
>COG1982 LdcC Arginine/lysine/ornithine decarboxylases [Amino acid transport and metabolism]
Probab=98.18 E-value=0.00037 Score=62.69 Aligned_cols=216 Identities=14% Similarity=0.106 Sum_probs=115.9
Q ss_pred CHHHHHHHHhcCCCE-E-EEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccC-cCCcCcccccccCCCCcC
Q psy6547 27 DVDALEAKLKSNPNI-C-AFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTG-LGRTGKLLAIHYEDVRPD 103 (266)
Q Consensus 27 d~~~l~~~l~~~~~~-~-~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~-~~~~g~~~~~~~~~~~~d 103 (266)
+.+.+++.+.+++.. + +++.+|.+ .|... .+++|.+.++++++++.+||+|.. ++..+.... .......+
T Consensus 152 ~~~~~~~~l~~~~~~~k~~vitnpTY--dGv~~----n~~~i~~~~~~~~a~v~~deah~~~~~~~~~l~~-~~~~~~~~ 224 (557)
T COG1982 152 PLETFKEALLAHPDAEKLAVITNPTY--DGVCY----NLRKIVELLHHYGAWVLYDEAHPAHFDFSPMLPE-SALNGGAD 224 (557)
T ss_pred CHHHHHHHHHhChhhheeEEEecCcc--ceEee----cHHHHHHHHhhcCceEEhhhcCcccccccccCcc-hhhhcCce
Confidence 688999988776643 4 44455555 67777 899999999999999999999943 333333222 22223455
Q ss_pred eee--ecccccCCchhhhhheecH-------HhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHhhc--cH----HHHHHH
Q psy6547 104 IVI--LGKALSGGLYPISAVLADD-------EVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEE--NM----IENAYK 168 (266)
Q Consensus 104 ~~~--~sK~~~~g~~~~g~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~--~~----~~~~~~ 168 (266)
+++ ..|.+++. -..+.+..+. ++.+.+. ..++-+++...+++...|=...... .+ .....+
T Consensus 225 ~~tqS~HK~l~al-SQaS~iHv~~~~~~~~~r~nea~~---~h~STSPsY~l~ASlD~Ar~~~~~~G~~l~~~~~~~~i~ 300 (557)
T COG1982 225 FVTQSTHKLLAAL-SQASMIHVKDGRAVNHERFNEALM---MHQSTSPSYPLMASLDVARMQEGNAGRELWQEVIDEAID 300 (557)
T ss_pred EEEechhhhhhhh-hhhHHHhhCCCccCCHHHHHHHHH---HHccCCchHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Confidence 665 55777764 4444554442 2222222 3333345555555554432222222 23 344455
Q ss_pred HHHHHHHHhhccccc-CCCcccE----Ee----------cCccce-eeEEEEeeCccchHHHHHHHHHHCCceeccCCCC
Q psy6547 169 MGEIFRSELSSPANK-SKASFKL----SS----------GGLKKS-INTLILSVSAILEVYDVCIKMKDAGLVTKPISNN 232 (266)
Q Consensus 169 ~~~~l~~~l~~~~~~-~~~~~~~----~~----------~g~~~~-~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~ 232 (266)
.++.+++...+ +++ ..+.... .+ .-.-=| =+.+..+ ..|..+..+.+.|+++|++..-.+..
T Consensus 301 ~r~~~~~~~~~-~~~~~~~~~~~~~~~~~whgf~~~~~~~~~lDP~Klti~tp-~~Gipg~~v~~~L~e~gii~e~~~d~ 378 (557)
T COG1982 301 FRKALRRLINE-IGFFPVLQPEKLDPPTGWHGFEDYADDQYFLDPTKLTITTP-EFGIPGAIVAKYLREHGIIPEETGDY 378 (557)
T ss_pred HHHHHHHHHHh-cCCeeeccccccCCcccccccccccccceeccccEEEEecC-CCCCcHHHHHHHHHHcCCeeeecCCc
Confidence 66666666665 442 1111100 00 000000 1223332 22678899999999999998866444
Q ss_pred EEEE--eccCCCCHHHHHHHHHHHH
Q psy6547 233 IIRL--SPALNITEQELREGLDIII 255 (266)
Q Consensus 233 ~iR~--~~~~~~t~~~i~~~~~~l~ 255 (266)
.+-+ ++.......+++.+++..+
T Consensus 379 ~~lll~~~~~gk~~~lv~~L~~f~r 403 (557)
T COG1982 379 SNLLLFSPGIGKWQTLVDRLLEFKR 403 (557)
T ss_pred eeeEEeeeccchHHHHHHHHHHHHH
Confidence 3333 3222344445555555444
No 380
>PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases. It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B ....
Probab=98.11 E-value=3.2e-06 Score=71.00 Aligned_cols=110 Identities=16% Similarity=0.139 Sum_probs=69.2
Q ss_pred CCCCceeecC-----CCHHHHHHHHhcC----CCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccC-
Q psy6547 16 HMPGYNIIPY-----NDVDALEAKLKSN----PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTG- 85 (266)
Q Consensus 16 ~~~~v~~~~~-----~d~~~l~~~l~~~----~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~- 85 (266)
.+.+++.++- .|+++|++.++.. +++++|+++.+++..|..+++.+.+++|.++|++||+++++|-+--.
T Consensus 91 ~G~~~~~l~~~~~G~l~~~~l~~~~~~~~~h~~~~~~v~le~t~~~~GG~~~s~~el~ai~~~a~~~gl~lhmDGARl~~ 170 (290)
T PF01212_consen 91 SGAKLIPLPSDDDGKLTPEDLEAAIEEHGAHHPQPAVVSLENTTELAGGTVYSLEELRAISELAREHGLPLHMDGARLAN 170 (290)
T ss_dssp TTCEEEEEBECTGTBB-HHHHHHHHHHHTGTSGGEEEEEEESSBTTTTSB---HHHHHHHHHHHHHHT-EEEEEETTHHH
T ss_pred cCcEEEECCCcccCCCCHHHHHHHhhhccccCCCccEEEEEecCcCCCCeeCCHHHHHHHHHHHHhCceEEEEehhhHHH
Confidence 3455556653 3699999999762 36899999998887666669999999999999999999999987621
Q ss_pred -cCCcCcccccccCCCCcCeee--ecccccCCchhh-hhheecHHhhhc
Q psy6547 86 -LGRTGKLLAIHYEDVRPDIVI--LGKALSGGLYPI-SAVLADDEVMGT 130 (266)
Q Consensus 86 -~~~~g~~~~~~~~~~~~d~~~--~sK~~~~g~~~~-g~~~~~~~~~~~ 130 (266)
....+.. ....-...|.++ ++|.++. +. +.+++++++++.
T Consensus 171 a~~~~~~~--~~e~~~~~D~v~~~~tK~~g~---~~Gavl~~~~~~i~~ 214 (290)
T PF01212_consen 171 AAAALGVS--LAEIAAGADSVSFGGTKNGGA---PGGAVLAGNKEFIAK 214 (290)
T ss_dssp HHCHHHHH--HHHHHTTSSEEEEETTSTT-S---SSEEEEEESHHHHHH
T ss_pred hhhccccc--HHHHhhhCCEEEEEEEccccc---ccceEEEechHHHHH
Confidence 1111221 111112355555 6676653 34 456678885544
No 381
>PRK12566 glycine dehydrogenase; Provisional
Probab=98.07 E-value=0.00033 Score=66.87 Aligned_cols=202 Identities=13% Similarity=0.102 Sum_probs=122.6
Q ss_pred HHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccc-cCcCCcCcccccccCCCCcCeee-
Q psy6547 29 DALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQ-TGLGRTGKLLAIHYEDVRPDIVI- 106 (266)
Q Consensus 29 ~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~-~~~~~~g~~~~~~~~~~~~d~~~- 106 (266)
++++..+ +.++.++++..++ ..|.+. ++++|.+++|++|.++|+- +- ..++ -.-+-.. ...||++
T Consensus 199 ~~~~~~~--~~~~~~v~vq~P~-~~G~i~----d~~~i~~~~h~~gal~~~~-~d~laL~---ll~~Pge--~GADI~vG 265 (954)
T PRK12566 199 DAVDNLA--AHAVFGALLQYPD-THGEIR----DLRPLIDQLHGQQALACVA-ADLLSLL---VLTPPGE--LGADVVLG 265 (954)
T ss_pred cchhhcC--CCCEEEEEEECCC-CceEEc----cHHHHHHHHHHcCCEEEEE-eCHHHHh---CCCChhh--cCCcEEee
Confidence 4445555 3368888775433 356663 8999999999999886622 22 1111 1111112 3467765
Q ss_pred ----eccccc-CCchhhhhheecHHhhhccCCCC----------------------------CCCCCCCcHHHHHHHHHH
Q psy6547 107 ----LGKALS-GGLYPISAVLADDEVMGTLVPGT----------------------------HGSTYGGNPLACKLAMTA 153 (266)
Q Consensus 107 ----~sK~~~-~g~~~~g~~~~~~~~~~~~~~~~----------------------------~~~~~~~~~~~~~a~~~~ 153 (266)
|+=.++ || --.|++.+++++.+.+.... ..++.+.+...++...+.
T Consensus 266 ~~Q~fGvp~~~GG-P~ag~~a~~~~~~R~~PGRivG~s~D~~G~~a~~l~LqtREQHIRReKAtSNICT~qaL~A~~a~~ 344 (954)
T PRK12566 266 STQRFGVPMGYGG-PHAAYFACRDDYKRAMPGRIIGVSRDARGNTALRMALQTREQHIRREKANSNICTAQVLLANIAGF 344 (954)
T ss_pred CCCcCCCCCCCCC-CCeeeeeehHHHHhhCCCCccceeecCCCCeeeehhhhHHHHHhhhccccchhhHHHHHHHHHHHH
Confidence 333444 55 55788988888887775431 112223333322222221
Q ss_pred H-HHHhhcc---HHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccC
Q psy6547 154 L-DVILEEN---MIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPI 229 (266)
Q Consensus 154 l-~~~~~~~---~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~ 229 (266)
. -.++.++ +-+++..++.++.+.|.+ .+..... ... |=.|.+.- +.++.++.++.+++|+.++-.
T Consensus 345 Y~~~~Gp~Gl~~ia~~~~~~a~~l~~~l~~-~g~~~~~-----~~f---F~~~~v~~--~~~~~~~~~~a~~~~~n~r~~ 413 (954)
T PRK12566 345 YAVYHGPEGLKRIAQRVHRLTAILAAGLEA-KGIKRLN-----RHF---FDTLTLEV--GGAQAAIIESAEAARINLRIL 413 (954)
T ss_pred HHHHhChHHHHHHHHHHHHHHHHHHHHHHh-cCCcccc-----CCc---cceEEEEc--cCCHHHHHHHHHHCCCeeEEe
Confidence 1 2234444 355677788888999888 5532211 122 33333332 214778999999999999988
Q ss_pred CCCEEEEeccCCCCHHHHHHHHHHHH
Q psy6547 230 SNNIIRLSPALNITEQELREGLDIII 255 (266)
Q Consensus 230 ~~~~iR~~~~~~~t~~~i~~~~~~l~ 255 (266)
+.+.+.+|+.-..|++|++.+++.+.
T Consensus 414 ~~~~~~~s~de~~~~~~~~~~~~~f~ 439 (954)
T PRK12566 414 GRGRLGVSLDETCDEATVARLFDIFL 439 (954)
T ss_pred CCCeEEEEeCCCCCHHHHHHHHHHhc
Confidence 78899999999999999999999884
No 382
>PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ].; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 3MC6_A 1XEY_A 1ES0_B 2OKK_A 2JIS_B 2QMA_A 3MAF_B 3MAD_B 3MAU_A 3MBB_A ....
Probab=98.07 E-value=0.00012 Score=63.87 Aligned_cols=158 Identities=19% Similarity=0.245 Sum_probs=90.2
Q ss_pred CCCceeecCC-----CHHHHHHHHhcC---CCEE-EEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcC
Q psy6547 17 MPGYNIIPYN-----DVDALEAKLKSN---PNIC-AFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLG 87 (266)
Q Consensus 17 ~~~v~~~~~~-----d~~~l~~~l~~~---~~~~-~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~ 87 (266)
+-+++.||-+ |+++|++.|++. ..+- +|+.+-....+|.+ +++++|+++|+++++++.+|.+|.|..
T Consensus 162 Glg~~~I~~~~~~~md~~~L~~~l~~~~~~g~~p~~vvat~Gtt~~Ga~----D~l~~i~~i~~~~~~wlHVDaA~gg~~ 237 (373)
T PF00282_consen 162 GLGVRKIPTDEDGRMDIEALEKALEKDIANGKTPFAVVATAGTTNTGAI----DPLEEIADICEKYNIWLHVDAAYGGSA 237 (373)
T ss_dssp TSEEEEE-BBTTSSB-HHHHHHHHHHHHHTTEEEEEEEEEBS-TTTSBB-----SHHHHHHHHHHCT-EEEEEETTGGGG
T ss_pred eeEEEEecCCcchhhhHHHhhhhhcccccccccceeeeccCCCcccccc----cCHHHHhhhccccceeeeecccccccc
Confidence 3346666643 689999988652 2233 44444445556666 699999999999999999999997732
Q ss_pred CcCcccccccCCC-CcCeee--ecccccCCchhhhhheecHH-hh-hccC---CCCC-------------CCCCCCcH-H
Q psy6547 88 RTGKLLAIHYEDV-RPDIVI--LGKALSGGLYPISAVLADDE-VM-GTLV---PGTH-------------GSTYGGNP-L 145 (266)
Q Consensus 88 ~~g~~~~~~~~~~-~~d~~~--~sK~~~~g~~~~g~~~~~~~-~~-~~~~---~~~~-------------~~~~~~~~-~ 145 (266)
.....+.....++ ..|=++ ..|+++.. ++.|+++.+.+ .+ +.+. .+.. ..+...+. .
T Consensus 238 ~~~~~~~~~~~gi~~adSit~d~HK~l~~P-~~~~~~l~r~~~~l~~~~~~~~~Yl~~~~~~~~~~~~~~~~tl~~SR~~ 316 (373)
T PF00282_consen 238 LLSPEYRHLLFGIERADSITIDPHKWLGVP-YGCGVLLVRDKSDLRDAFSINADYLGNDDRESDESYDYGDYTLQGSRRF 316 (373)
T ss_dssp GGHCTTGGGGTTGGGESEEEEETTTTTS-S-SS-EEEEESSGGGHHGGGEEEETCTT-S-SSS-GGGCEEEGSSSSSGHH
T ss_pred cccccccccccccccccccccchhhhhcCC-ccceeEEeecccchHHHhccChhhhcccccccccccccccccccccccc
Confidence 1111111111222 233333 77999977 78888877553 22 2221 1111 01223343 3
Q ss_pred HHHHHHHHHHHHhhcc---HHHHHHHHHHHHHHHhhc
Q psy6547 146 ACKLAMTALDVILEEN---MIENAYKMGEIFRSELSS 179 (266)
Q Consensus 146 ~~~a~~~~l~~~~~~~---~~~~~~~~~~~l~~~l~~ 179 (266)
....+..+++.++.++ ..++..++++++.++|++
T Consensus 317 ~alk~w~~l~~~G~~G~~~~i~~~~~~a~~l~~~l~~ 353 (373)
T PF00282_consen 317 RALKLWATLKSLGREGYRERIRRCIELARYLADRLRK 353 (373)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455667777777665 455566788888888888
No 383
>KOG2467|consensus
Probab=98.03 E-value=0.00016 Score=60.93 Aligned_cols=209 Identities=19% Similarity=0.188 Sum_probs=121.1
Q ss_pred CHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccc-cCcCCcCc-ccccccCCCCcCe
Q psy6547 27 DVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQ-TGLGRTGK-LLAIHYEDVRPDI 104 (266)
Q Consensus 27 d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~-~~~~~~g~-~~~~~~~~~~~d~ 104 (266)
|.|.||+....- ++++|++-...- .-.=+..+++++|.+.|.++++|-+| +|+---|. +.+++. .|+
T Consensus 177 DYD~Le~~A~~f-rPk~iiaG~SaY------~R~~DYaR~R~Iad~~gA~Lm~DMAHISgLVAA~vipsPFey----~Di 245 (477)
T KOG2467|consen 177 DYDKLEKTATLF-RPKLIIAGTSAY------SRLIDYARFRKIADKVGAYLMADMAHISGLVAAGVIPSPFEY----CDI 245 (477)
T ss_pred ehHHHHHHHHhc-CCcEEEeccccc------hhhccHHHHHHHHHhcCceeehhhhhHHHHHhcccCCCcccc----cce
Confidence 566666655222 567777653221 11127899999999999999999999 55422221 112221 344
Q ss_pred ee--ecccccCCchhhhhheecHHhhhccC--------------------CCCCCCCCCCcHHHHHHHHHHHHHHhhc--
Q psy6547 105 VI--LGKALSGGLYPISAVLADDEVMGTLV--------------------PGTHGSTYGGNPLACKLAMTALDVILEE-- 160 (266)
Q Consensus 105 ~~--~sK~~~~g~~~~g~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~a~~~~l~~~~~~-- 160 (266)
++ -.|++-|. |.|.+..++-+. ... +..++. ++--..++...+|+...+.
T Consensus 246 VTTTTHKsLRGP--Rg~mIFyRkGvk-~~~~k~g~~i~ydlE~kINfaVFP~lQGG---PHNhtIaalAvALkQa~tpef 319 (477)
T KOG2467|consen 246 VTTTTHKSLRGP--RGAMIFYRKGVK-SIKPKQGKEILYDLEDKINFAVFPGLQGG---PHNHTIAALAVALKQAMTPEF 319 (477)
T ss_pred eeccccccccCC--cceeEEEeccCC-cCCCCCCCcceechhhhhhhhccccccCC---CCcchHHHHHHHHHhhCCHHH
Confidence 44 77888764 667666554321 111 001111 2222445555666665553
Q ss_pred -cHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCc--cchHHHHHHHHH---HCCceec---cCCC
Q psy6547 161 -NMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSA--ILEVYDVCIKMK---DAGLVTK---PISN 231 (266)
Q Consensus 161 -~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~--~~~~~~~~~~l~---~~gi~~~---~~~~ 231 (266)
.+++++.++.+.+.+.|.+ .+...+. .|.+..++.+++.... +...+.+++.+- .++-+.. ...+
T Consensus 320 k~Yq~qV~~Nakala~~l~~-~Gy~lvt-----gGTDnHlvLvDLr~~G~dGarvE~vle~~~I~~NKNtvpGD~Sal~P 393 (477)
T KOG2467|consen 320 KEYQKQVLKNAKALASALIS-RGYKLVT-----GGTDNHLVLVDLRPKGVDGARVEKVLELCHIALNKNTVPGDKSALSP 393 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHH-cCceEec-----CCccceEEEEeccccCCchHHHHHHHHHhhhhhcCCcCCCCccccCC
Confidence 5788899999999999988 6654443 3555557878876531 333444544432 1222111 1246
Q ss_pred CEEEEeccC----CCCHHHHHHHHHHHHHHH
Q psy6547 232 NIIRLSPAL----NITEQELREGLDIIINTI 258 (266)
Q Consensus 232 ~~iR~~~~~----~~t~~~i~~~~~~l~~~~ 258 (266)
+.+|+..+. .+.++|+++..+-|.+++
T Consensus 394 gGiRiGtPAmTsRG~~e~df~~v~~fi~~av 424 (477)
T KOG2467|consen 394 GGIRIGTPAMTSRGFGEEDFEKVADFIDRAV 424 (477)
T ss_pred CceeccchhhcccCccHHHHHHHHHHHHHHH
Confidence 889998764 445778877777777664
No 384
>KOG1412|consensus
Probab=97.95 E-value=0.00036 Score=57.73 Aligned_cols=214 Identities=13% Similarity=0.139 Sum_probs=123.1
Q ss_pred CHHHHHHHHhcCCCEEEEEEcc-ccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCcccccccC-------
Q psy6547 27 DVDALEAKLKSNPNICAFMVEP-IQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYE------- 98 (266)
Q Consensus 27 d~~~l~~~l~~~~~~~~i~~~~-~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~~~~~~------- 98 (266)
|++-+-..|+..|.-..+++-. .+|++|+- ++++-+.+|+++.++.+..-++|-+|-||+ .|.+ .-+.|
T Consensus 164 d~e~~Lsdl~~APe~si~iLhaCAhNPTGmD-PT~EQW~qia~vik~k~lf~fFDiAYQGfA-SGD~-~~DawAiR~fV~ 240 (410)
T KOG1412|consen 164 DLEGFLSDLESAPEGSIIILHACAHNPTGMD-PTREQWKQIADVIKSKNLFPFFDIAYQGFA-SGDL-DADAWAIRYFVE 240 (410)
T ss_pred cHHHHHHHHhhCCCCcEEeeeccccCCCCCC-CCHHHHHHHHHHHHhcCceeeeehhhcccc-cCCc-cccHHHHHHHHh
Confidence 4666666665555434444433 48888977 899999999999999999999999998884 3321 11221
Q ss_pred -CCCcCeee--eccccc-CCchhhhhhe--e-cHHhhhccCCC---CCCCCC-CCcHHHHHHHHHHHHHHh-------h-
Q psy6547 99 -DVRPDIVI--LGKALS-GGLYPISAVL--A-DDEVMGTLVPG---THGSTY-GGNPLACKLAMTALDVIL-------E- 159 (266)
Q Consensus 99 -~~~~d~~~--~sK~~~-~g~~~~g~~~--~-~~~~~~~~~~~---~~~~~~-~~~~~~~~a~~~~l~~~~-------~- 159 (266)
| ..-+++ |+|-+| -+ -|+|.+. . ++......... -...++ .+...++..+...|.--+ +
T Consensus 241 ~g-~e~fv~QSFaKNfGlYn-eRvGnltvv~~n~a~i~~v~SQl~lviR~~~SNPPAyGArIV~kvL~tP~lre~W~~si 318 (410)
T KOG1412|consen 241 QG-FELFVCQSFAKNFGLYN-ERVGNLTVVVNNPAVIAGVKSQLTLVIRSNWSNPPAYGARIVHKVLSTPELREQWIQSI 318 (410)
T ss_pred cC-CeEEEEhhhhhhccccc-ccccceEEEecChhHHHHHHHHHHHHHhhccCCCcchhhHHHHHHhcCHHHHHHHHHHH
Confidence 2 122333 999998 55 6888643 2 22332222211 011122 222223333333332111 0
Q ss_pred ccHHHHHHHHHHHHHHHhhcccccCC-CcccEEecCccceeeEEEEeeCccchHHHHHHHHH-HCCceeccCCCCEEEEe
Q psy6547 160 ENMIENAYKMGEIFRSELSSPANKSK-ASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMK-DAGLVTKPISNNIIRLS 237 (266)
Q Consensus 160 ~~~~~~~~~~~~~l~~~l~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~-~~gi~~~~~~~~~iR~~ 237 (266)
..+-.++++.+..|++.|.. ++.++ +..-....|+ |.+.- ..+. -++.|. .+.|++.+. +.|-+|
T Consensus 319 k~MssRI~~MR~aLrd~L~a-L~TPGtWDHI~~QiGM----FSyTG-----Ltp~-qV~~li~~h~vyLl~~--GRInis 385 (410)
T KOG1412|consen 319 KTMSSRIKKMRTALRDHLVA-LKTPGTWDHITQQIGM----FSYTG-----LTPA-QVDHLIENHKVYLLSD--GRINIS 385 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHh-cCCCCcHHHHHhhccc----eeecC-----CCHH-HHHHHHHhceEEEecC--CcEeee
Confidence 12556777888888888888 66432 2221223343 44432 3333 355555 567877763 545555
Q ss_pred ccCCCCHHHHHHHHHHHHHHHHHH
Q psy6547 238 PALNITEQELREGLDIIINTINTM 261 (266)
Q Consensus 238 ~~~~~t~~~i~~~~~~l~~~~~~~ 261 (266)
......++...++|.++....
T Consensus 386 ---GLN~~NveyVAkAIde~Vr~~ 406 (410)
T KOG1412|consen 386 ---GLNMKNVEYVAKAIDETVRAI 406 (410)
T ss_pred ---ccccccHHHHHHHHHHHHHhh
Confidence 445668899999999887664
No 385
>COG1932 SerC Phosphoserine aminotransferase [Coenzyme metabolism / Amino acid transport and metabolism]
Probab=97.94 E-value=0.00078 Score=57.03 Aligned_cols=149 Identities=13% Similarity=0.065 Sum_probs=100.0
Q ss_pred Ceeee--cccccCCchhhhhheecHHhhhccCCC------------CCCCCC-CCcHHHHHHHHHHHHHHhhc----cHH
Q psy6547 103 DIVIL--GKALSGGLYPISAVLADDEVMGTLVPG------------THGSTY-GGNPLACKLAMTALDVILEE----NMI 163 (266)
Q Consensus 103 d~~~~--sK~~~~g~~~~g~~~~~~~~~~~~~~~------------~~~~~~-~~~~~~~~a~~~~l~~~~~~----~~~ 163 (266)
|++.+ -|.+|+- .++.++.++++++.++.. ...++| +++.++.....-+++++... .+.
T Consensus 192 dviyagaQKnlGpa--GltvvIvr~~~l~r~~~~~~P~if~y~~~~~~~s~yNTPptfa~y~~~lv~~Wlk~~GGl~~~~ 269 (365)
T COG1932 192 DVIYAGAQKNLGPA--GLTVVIVRPDLLERAESYTLPSIFDYLTHADNGSMYNTPPTFAWYLLGLVFKWLKSQGGLEALE 269 (365)
T ss_pred ceEEEehhhccCcc--ceEEEEEcHHHHhcccccCCchHhhchhhhccCCccCCcHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 44444 4888842 277788899998887653 223444 44455566666778888763 467
Q ss_pred HHHHHHHHHHHHHhhccccc--CCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccC--CCCEEEEecc
Q psy6547 164 ENAYKMGEIFRSELSSPANK--SKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPI--SNNIIRLSPA 239 (266)
Q Consensus 164 ~~~~~~~~~l~~~l~~~~~~--~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~--~~~~iR~~~~ 239 (266)
++.++..+.|.+-+++ -++ +.+....++ -+ -+.|.+.+ ..-.+.|.++++++|+..--+ ..+.+|.++.
T Consensus 270 ~rn~~ka~~LY~~id~-s~fy~~~v~~~~RS-~m---nV~f~~~~--~~ld~~fv~eae~~gl~~lkGhr~vgGmRasiy 342 (365)
T COG1932 270 ARNQAKAQLLYDWIDK-SDFYRNLVAKANRS-RM---NVTFTLVD--AELDKGFVAEAEAAGLIYLKGHRSVGGLRASIY 342 (365)
T ss_pred HHHHHHHHHHHHHHHh-CCccccccchhhcc-ce---eEEEEcCc--HHHHHHHHHHHHHcCCceeccccCCCceeeeee
Confidence 7777778888887776 343 222221222 22 35566555 334578999999998877644 3455999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHH
Q psy6547 240 LNITEQELREGLDIIINTINT 260 (266)
Q Consensus 240 ~~~t~~~i~~~~~~l~~~~~~ 260 (266)
-.++.++++.+++-++++.++
T Consensus 343 nA~~~e~veaL~~fm~~f~~~ 363 (365)
T COG1932 343 NAVPLEDVEALTDFMDWFEET 363 (365)
T ss_pred cCCCHHHHHHHHHHHHHHHHh
Confidence 999999999999999888765
No 386
>COG3033 TnaA Tryptophanase [Amino acid transport and metabolism]
Probab=97.90 E-value=0.0014 Score=55.44 Aligned_cols=222 Identities=13% Similarity=0.136 Sum_probs=128.5
Q ss_pred CHHHHHHHHhcCC--CEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccC----cCCcCcccccccCCC
Q psy6547 27 DVDALEAKLKSNP--NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTG----LGRTGKLLAIHYEDV 100 (266)
Q Consensus 27 d~~~l~~~l~~~~--~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~----~~~~g~~~~~~~~~~ 100 (266)
|++.|+++|++-. ++..|++.-.+|..|.-+.|-+.+++++++|++|++++++|.+... |...-.. ....|.+
T Consensus 170 D~~kLe~lidevG~~nvp~I~~tiT~NsagGQpVSm~n~r~v~~ia~ky~ipvv~Da~RfaENaYFIk~rE~-gYrd~sI 248 (471)
T COG3033 170 DLEKLERLIDEVGADNVPYIVLTITNNSAGGQPVSMANMKAVYEIAKKYDIPVVMDAARFAENAYFIKQREP-GYRDWSI 248 (471)
T ss_pred CHHHHHHHHHHhCcccCcEEEEEEeccccCCCcchHHhHHHHHHHHHHcCCcEEeehhhhhhhhhhhhhcCc-ccccccH
Confidence 8999999997732 5777776666666666678999999999999999999999977621 2111110 0111111
Q ss_pred ---------CcCeeeec-c--cccCCchhh-hhheecHH----hhhccCCC----CCCCCCCC-cHHHHHHHHHHHHHHh
Q psy6547 101 ---------RPDIVILG-K--ALSGGLYPI-SAVLADDE----VMGTLVPG----THGSTYGG-NPLACKLAMTALDVIL 158 (266)
Q Consensus 101 ---------~~d~~~~s-K--~~~~g~~~~-g~~~~~~~----~~~~~~~~----~~~~~~~~-~~~~~~a~~~~l~~~~ 158 (266)
-.|-.++| | ++. .+ |+++.+.+ +.+.++.. .-..+|++ +.=.+.+....|...-
T Consensus 249 ~~IarEm~sYaD~~~mS~KKD~lv----nmGGfl~~~D~~~fDvy~~~~~~~V~~eG~~tYGgl~GrdmealAvGL~e~~ 324 (471)
T COG3033 249 EEIAREMYSYADGCTMSAKKDGLV----NMGGFLCFKDDSFFDVYEECRTLVVVQEGFPTYGGLAGRDMEALAVGLREGV 324 (471)
T ss_pred HHHHHHHHhhhhhheeecccccee----ccccEEEecCccHHHHHHHHHhheEeeccccccCcccchhHHHHHHHHHHhc
Confidence 12444444 3 333 23 23555444 33333321 12223322 1112334444455444
Q ss_pred hccHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEee------CccchHHHHHHHHH-HCCceecc---
Q psy6547 159 EENMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSV------SAILEVYDVCIKMK-DAGLVTKP--- 228 (266)
Q Consensus 159 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~------~~~~~~~~~~~~l~-~~gi~~~~--- 228 (266)
..++.++..+..++|.+.|.+ .+-+.+ .+..|+ -+.++... .+.+.++.|+-+|- +.||-..-
T Consensus 325 ~~~yl~~Rv~Qv~YL~~~l~~-~GVpi~---~paGGH---avfvda~~~lphip~eqFpaqala~ely~e~GiRavElG~ 397 (471)
T COG3033 325 NFDYLAHRVAQVQYLADGLEE-AGVPIV---QPAGGH---AVFVDAGKFLPHIPAEQFPAQALACELYKEAGIRAVELGS 397 (471)
T ss_pred CcHHHHHHHHHHHHHHHHHHh-cCCeeE---ecCCCc---eEEeehhhhcCCCChhhCcHHHHHHHHHHHhCeeeeeeec
Confidence 466888888888999999988 554322 233344 34444321 11345677776664 55764421
Q ss_pred ----C----------CCCEEEEecc-CCCCHHHHHHHHHHHHHHHHH
Q psy6547 229 ----I----------SNNIIRLSPA-LNITEQELREGLDIIINTINT 260 (266)
Q Consensus 229 ----~----------~~~~iR~~~~-~~~t~~~i~~~~~~l~~~~~~ 260 (266)
. ..+.+|+..+ ..-|.+.+|..++.+.+..+.
T Consensus 398 ~~~~rd~ktg~q~~~~~elvRltipRrtYt~~HmD~V~~a~~~l~e~ 444 (471)
T COG3033 398 FSLGRDPKTGKQHPPPAELVRLTIPRRTYTQTHMDFVIEAFKALKEN 444 (471)
T ss_pred eecccCCCccccCCCchheeeEeccccccchhHHHHHHHHHHHHHhc
Confidence 1 1267999876 455778899999988877654
No 387
>TIGR03811 tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcus type. This model represents tyrosine decarboxylases in the family of the Enterococcus faecalis enzyme Tdc. These enzymes often are encoded next to tyrosine/tyramine antiporter, together comprising a system in which tyrosine decarboxylation can protect against exposure to acid conditions. This clade differs from the archaeal tyrosine decarboxylases associated with methanofuran biosynthesis.
Probab=97.79 E-value=0.0053 Score=56.74 Aligned_cols=156 Identities=17% Similarity=0.211 Sum_probs=93.3
Q ss_pred CceeecCC-----CHHHHHHHHhc----CCCEEEEEEccccCCCCcccCChHHHHHHHHHH---HhcCC--EEEEecccc
Q psy6547 19 GYNIIPYN-----DVDALEAKLKS----NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALC---SQYNV--LFIADEVQT 84 (266)
Q Consensus 19 ~v~~~~~~-----d~~~l~~~l~~----~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~---~~~g~--~li~De~~~ 84 (266)
.|+.||-+ |+++|++.|++ ...+-+|+.+-.....|.+ +++++|.++| +++|+ ++.+|.+|.
T Consensus 248 ~vv~VpvD~~~rmd~~~L~~~I~~~~~~g~p~~~VVataGTT~~Gai----Dpl~eI~~l~~~~~~~gl~~~lHVDAAyG 323 (608)
T TIGR03811 248 QVIPVPVDSNYRMDINELEKIIRKLAAEKTPILGVVGVVGSTEEGAV----DGIDKIVALRNKLMKEGIYFYLHVDAAYG 323 (608)
T ss_pred cEEEeecCCCCcCCHHHHHHHHHHHHhcCCCeEEEEEEcCCcCCccc----CCHHHHHHHHHHHHHcCCceeEeeecccc
Confidence 46777743 79999998864 2234555555455556666 5999999998 77898 699999998
Q ss_pred CcCC---cC---ccccc--------------------------ccCCC-CcCeee--ecccccCCchhhhhheecH-Hhh
Q psy6547 85 GLGR---TG---KLLAI--------------------------HYEDV-RPDIVI--LGKALSGGLYPISAVLADD-EVM 128 (266)
Q Consensus 85 ~~~~---~g---~~~~~--------------------------~~~~~-~~d~~~--~sK~~~~g~~~~g~~~~~~-~~~ 128 (266)
|+.+ .. .+..+ ...++ ..|-++ ..|.+.-. ++.|+++.+. ++.
T Consensus 324 G~~~~l~~~~~~~~~p~~~~~~~~~~~~~f~~~~~~l~~~~~~~l~gle~ADSItvDpHK~g~~P-y~~G~ll~Rd~~~~ 402 (608)
T TIGR03811 324 GYGRAIFLDEDDNFIPYDDLQEVHAEYGVFTEKKEYISREVYNAYKAISEAESVTIDPHKMGYIP-YSAGGIVIQDIRMR 402 (608)
T ss_pred chhhhhhccccccccccchhhcccccccccccccccccHhHHHHHhcCcCceEEEeCcccccccC-CCeEEEEEeCHHHH
Confidence 8631 00 00000 00122 233333 77988866 7788777754 332
Q ss_pred hccC---CCC--C---------CCCCCCcHHH--HHHHHHHHHHH--hh---ccHHHHHHHHHHHHHHHhhc
Q psy6547 129 GTLV---PGT--H---------GSTYGGNPLA--CKLAMTALDVI--LE---ENMIENAYKMGEIFRSELSS 179 (266)
Q Consensus 129 ~~~~---~~~--~---------~~~~~~~~~~--~~a~~~~l~~~--~~---~~~~~~~~~~~~~l~~~l~~ 179 (266)
+.+. .+. . ..+..++..+ +++...+++.+ .. .++..+..++++++.+.|++
T Consensus 403 ~~~~~~a~Yl~~~~~~~p~~~g~~~legSR~ga~AlklW~~lr~l~~G~~Gyg~~i~~~i~~A~~~~~~L~~ 474 (608)
T TIGR03811 403 DVISYFATYVFEKGADIPALLGAYILEGSKAGATAASVWAAHKVLPLNVTGYGKLIGASIEGAHRFYDFLNN 474 (608)
T ss_pred HHHhcCcchhccccccCcccccccceecCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3221 111 0 0122344433 55666777776 33 34677778889999998887
No 388
>KOG0629|consensus
Probab=97.50 E-value=0.0051 Score=53.20 Aligned_cols=230 Identities=16% Similarity=0.136 Sum_probs=117.5
Q ss_pred CCceeecCC-----CHHHHHHHHhcCCCE--EEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccC-c--C
Q psy6547 18 PGYNIIPYN-----DVDALEAKLKSNPNI--CAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTG-L--G 87 (266)
Q Consensus 18 ~~v~~~~~~-----d~~~l~~~l~~~~~~--~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~-~--~ 87 (266)
..++.|+-+ .+++||+.|.+.... --++++-..++ ++.---++++.|+++|.+|++++.+|.+..| + .
T Consensus 222 d~c~~v~t~e~Gkm~~~dLe~kile~k~kg~~Pf~vnaTaGT--TV~GAFDdL~~iadiC~k~~lWmHvDAAwGGglLmS 299 (510)
T KOG0629|consen 222 DHCIKVKTDERGKMIPDDLEKKILEAKAKGGVPFFVNATAGT--TVLGAFDDLNGIADICEKHKLWMHVDAAWGGGLLMS 299 (510)
T ss_pred ceeEEecccccCccchHHHHHHHHHHHhcCCCCeEEEecCCc--eeeeccCcHHHHHHHHHhcCEEEEeecccccccccC
Confidence 445555544 589999998653211 12333333222 2223346999999999999999999999965 2 1
Q ss_pred CcCcccccccCCC-CcCeee--ecccccCCchhhhhheecH-HhhhccCCCC----------CCCCC-CCcHHHHH----
Q psy6547 88 RTGKLLAIHYEDV-RPDIVI--LGKALSGGLYPISAVLADD-EVMGTLVPGT----------HGSTY-GGNPLACK---- 148 (266)
Q Consensus 88 ~~g~~~~~~~~~~-~~d~~~--~sK~~~~g~~~~g~~~~~~-~~~~~~~~~~----------~~~~~-~~~~~~~~---- 148 (266)
+... ....|+ ..+-++ -.|.++.+ ++=+..+.+. .+++...... .-.++ ++.-..+-
T Consensus 300 ~k~R---~kl~Giera~SvtwnpHK~~gap-lqCsa~l~r~~gll~~Cn~~~A~YLFq~dK~YdvS~DTgdK~iQCGRh~ 375 (510)
T KOG0629|consen 300 RKHR---HKLTGIERANSVTWNPHKLMGAP-LQCSAFLTREEGLLQRCNQMSAIYLFQQDKFYDVSYDTGDKAIQCGRHV 375 (510)
T ss_pred hhhH---hhccCccccCceeecHHHhhcCc-chhhHHHHHHHHHHHhhcccchhhhhccCceeecccccccchhhcCccc
Confidence 1111 122233 223233 56888877 5655555443 3344433210 00111 11111110
Q ss_pred -HHHHHHHHH--hhc---cHHHHHHHHHHHHHHHhhccccc-CCCcccEEecCcccee-eEEEEeeCc------------
Q psy6547 149 -LAMTALDVI--LEE---NMIENAYKMGEIFRSELSSPANK-SKASFKLSSGGLKKSI-NTLILSVSA------------ 208 (266)
Q Consensus 149 -a~~~~l~~~--~~~---~~~~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~~g~~~~~-~~~~~~~~~------------ 208 (266)
...-.|-+- +.+ ....++.++++++.+++++ .+. ..+-...+..-+ + +|+..+.-.
T Consensus 376 D~FKlWlmwkaKG~~Gfe~~v~k~~~lA~yl~~~lre-r~~~~~l~~~~pe~~n---v~fw~vp~~lR~~~~~~e~~~rL 451 (510)
T KOG0629|consen 376 DVFKLWLMWKAKGTQGFEAQVDKCLRLAEYLYDRLRE-REGFEMLFELEPEHVN---VCFWYVPPSLRGWQENPERDSRL 451 (510)
T ss_pred cHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHh-cccceehhcCCCceEE---EeeccCchHhccCcccchhhhHH
Confidence 011111111 112 3456677899999999998 443 222110011111 3 222221100
Q ss_pred cchHHHHHHHHHHCCceec---cC--CCCEEEEecc-CCCCHHHHHHHHHHHHHH
Q psy6547 209 ILEVYDVCIKMKDAGLVTK---PI--SNNIIRLSPA-LNITEQELREGLDIIINT 257 (266)
Q Consensus 209 ~~~~~~~~~~l~~~gi~~~---~~--~~~~iR~~~~-~~~t~~~i~~~~~~l~~~ 257 (266)
...+..+-.++.++|-... |. -++++|+..+ .+.+++|+|-+++.|.+.
T Consensus 452 ~kVaPkIK~~Mm~~Gt~Mi~YqPl~~~~nffr~v~sn~a~~~ad~dflldEIerl 506 (510)
T KOG0629|consen 452 VKVAPKIKERMMKKGTTMIGYQPLGDKPNFFRMVISNPALTEADLDFLLDEIERL 506 (510)
T ss_pred HhhCcHHHHHHHhccceeeEecccccccchhheecccchhhhhhHHHHHHHHHHh
Confidence 0123445567777776543 32 3578887532 356899999999988765
No 389
>PF06838 Met_gamma_lyase: Methionine gamma-lyase ; InterPro: IPR009651 This family represents the aluminium resistance protein, which confers resistance to aluminium in bacteria [].; PDB: 3JZL_A 3I16_C 3GWP_A 3FD0_B 3HT4_F.
Probab=97.11 E-value=0.0037 Score=53.20 Aligned_cols=188 Identities=17% Similarity=0.211 Sum_probs=98.5
Q ss_pred CCCCceeecC-----CCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhc--CCEEEEeccccCcCC
Q psy6547 16 HMPGYNIIPY-----NDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQY--NVLFIADEVQTGLGR 88 (266)
Q Consensus 16 ~~~~v~~~~~-----~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~--g~~li~De~~~~~~~ 88 (266)
++.+...++- .|.+.+++.++ ++++++++--.-+-.---.++.+.++++.+..++. ++.+++|++|..|--
T Consensus 127 ~Gi~Y~~v~L~~dg~~D~~~i~~~~~--~~tk~v~IQRSrGYs~R~sl~i~~I~~~i~~vk~~~p~~iifVDNCYGEFvE 204 (403)
T PF06838_consen 127 FGIKYREVPLTEDGTIDWEAIKKALK--PNTKMVLIQRSRGYSWRPSLTIEEIKEIIKFVKEINPDVIIFVDNCYGEFVE 204 (403)
T ss_dssp GT-EEEE--B-TTSSB-HHHHHHHHH--TTEEEEEEE-S-TTSSS----HHHHHHHHHHHHHH-TTSEEEEE-TTTTTTS
T ss_pred hCceeEEEeecCCCCcCHHHHHHhhc--cCceEEEEecCCCCCCCCCCCHHHHHHHHHHHHhhCCCeEEEEeCCcceecc
Confidence 3555666653 27999999994 67999998765333322336778899999888876 589999999977732
Q ss_pred cCcccccccCCCCcCeee--ecccccCCchhh-hhheecHHhhhccCCC--------CCCCCCCCcHHHHHHHHHHHHHH
Q psy6547 89 TGKLLAIHYEDVRPDIVI--LGKALSGGLYPI-SAVLADDEVMGTLVPG--------THGSTYGGNPLACKLAMTALDVI 157 (266)
Q Consensus 89 ~g~~~~~~~~~~~~d~~~--~sK~~~~g~~~~-g~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~a~~~~l~~~ 157 (266)
.-++ ..+..|++. +=|-.|||+-|. ||+++++++.+..... ..+.++..+........-+
T Consensus 205 ~~EP-----~~vGADl~aGSLIKNpGGgiAptGGYIaGr~~lVe~~a~RLTaPGiG~e~G~t~~~~R~~~QGlFlA---- 275 (403)
T PF06838_consen 205 TQEP-----TEVGADLMAGSLIKNPGGGIAPTGGYIAGRKDLVERAAYRLTAPGIGKEVGATLGTNRLMFQGLFLA---- 275 (403)
T ss_dssp SS-G-----GGGT-SEEEEETTSGGGTTT-SS-EEEEESHHHHHHHHHHHS-TTTGGGSS--TTTHHHHHHHHHHH----
T ss_pred ccCc-----cccchhheeccceeCCCCCccCcCCEEechHHHHHHHHhhhcCCccccccccCcchHHHHHhHHhhc----
Confidence 2222 134566665 669999886665 5789999998876421 3445554444332222111
Q ss_pred hhccHHHHHHHHHHHHHHHhhcccccCCCcc-cEEecCccceeeEEEEeeCccchHHHHHHHHHHC
Q psy6547 158 LEENMIENAYKMGEIFRSELSSPANKSKASF-KLSSGGLKKSINTLILSVSAILEVYDVCIKMKDA 222 (266)
Q Consensus 158 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 222 (266)
........+-.......+++ ++.+..+. ..+..-. +-.+.+.+ ......||+...+.
T Consensus 276 --P~vV~eAlKgaif~A~~fe~-lG~~v~P~~~~~R~Di---IQai~l~~--~e~l~~FC~~iQ~~ 333 (403)
T PF06838_consen 276 --PHVVGEALKGAIFAAALFEK-LGFEVSPKPDDPRSDI---IQAIELGS--PEKLIAFCQGIQAA 333 (403)
T ss_dssp --HHHHHHHHHHHHHHHHHHHH-TT-EEES-TTS--SSS----EEEE-SS--HHHHHHHHHHHHHT
T ss_pred --hHHHHHHHHHHHHHHHHHHH-cCCcCCCCCCCCCCce---EEEEECCC--HHHHHHHHHHHHhc
Confidence 11222222222222333444 54321111 0122344 66677776 45667788887765
No 390
>KOG1411|consensus
Probab=96.74 E-value=0.011 Score=49.87 Aligned_cols=229 Identities=17% Similarity=0.179 Sum_probs=120.0
Q ss_pred cccCCCCCCceeecCC-------CHHHHHHHHhcCCCEEEEEEcc-ccCCCCcccCChHHHHHHHHHHHhcCCEEEEecc
Q psy6547 11 NEFGPHMPGYNIIPYN-------DVDALEAKLKSNPNICAFMVEP-IQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEV 82 (266)
Q Consensus 11 ~~~~~~~~~v~~~~~~-------d~~~l~~~l~~~~~~~~i~~~~-~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~ 82 (266)
..|.-.+..+..++|- |.+.+-+.+++.+.-..|++-. .+|++|.- ++.+-+++|.++.++.+.+-++|-+
T Consensus 161 ~if~~ag~~~~~yrYyd~~t~gld~~g~ledl~~~p~gs~ilLhaCaHNPTGvD-Pt~eqw~ki~~~~~~k~~~pffDmA 239 (427)
T KOG1411|consen 161 NIFKDAGLPVKFYRYYDPKTRGLDFKGMLEDLGEAPEGSIILLHACAHNPTGVD-PTKEQWEKISDLIKEKNLLPFFDMA 239 (427)
T ss_pred ccccccCcceeeeeeccccccccchHHHHHHHhcCCCCcEEEeehhhcCCCCCC-ccHHHHHHHHHHhhhccccchhhhh
Confidence 3455555555555554 3344444444444323333333 58888865 8999999999999999999999999
Q ss_pred ccCcCCcCcccccccCC------CCcCeee---eccccc-CCchhhhhh--ee-cHHhhhccCCC---CCCCCCCCcHH-
Q psy6547 83 QTGLGRTGKLLAIHYED------VRPDIVI---LGKALS-GGLYPISAV--LA-DDEVMGTLVPG---THGSTYGGNPL- 145 (266)
Q Consensus 83 ~~~~~~~g~~~~~~~~~------~~~d~~~---~sK~~~-~g~~~~g~~--~~-~~~~~~~~~~~---~~~~~~~~~~~- 145 (266)
|-||. .|.. ..+.+. ..-++.. ++|-+| -| -|+|.+ ++ +++.....+.. .....|+.+|+
T Consensus 240 YQGfa-SG~~-d~DA~avR~F~~~g~~~~laQSyAKNMGLYg-ERvGa~svvc~~ad~A~rV~SQlk~liRpmYSnPP~h 316 (427)
T KOG1411|consen 240 YQGFA-SGDL-DKDAQAVRLFVEDGHEILLAQSYAKNMGLYG-ERVGALSVVCKDADEAKRVESQLKILIRPMYSNPPLH 316 (427)
T ss_pred hcccc-cCCc-hhhHHHHHHHHHcCCceEeehhhhhhcchhh-hccceeEEEecCHHHHHHHHHHHHHHhcccccCCCcc
Confidence 98883 2321 111111 1222322 889988 44 577764 33 33433333221 11222222222
Q ss_pred HHHHHHHHHHHHh--------hccHHHHHHHHHHHHHHHhhcccccCC-CcccEEecCccceeeEEEEeeCccchHHHHH
Q psy6547 146 ACKLAMTALDVIL--------EENMIENAYKMGEIFRSELSSPANKSK-ASFKLSSGGLKKSINTLILSVSAILEVYDVC 216 (266)
Q Consensus 146 ~~~a~~~~l~~~~--------~~~~~~~~~~~~~~l~~~l~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 216 (266)
++..+...|..-+ -..+..++...+..+.+.|.. .+... +..-....|+ |.|. +.+++.+-
T Consensus 317 GArIv~~Il~d~~l~~~W~~evk~MadRi~~mR~~L~d~L~~-~gs~~~W~hI~~QIGM----F~fT-----gl~peQv~ 386 (427)
T KOG1411|consen 317 GARIVATILSDPDLKNQWLGEVKGMADRIISMRQQLFDALEK-EGSPGNWSHITKQIGM----FCFT-----GLNPEQVD 386 (427)
T ss_pred chhhhhhccCChHHHHHHHHHHHHHHHhhhhhHHHHhHHhhc-CCCCccHHHHHHhhhe----eeec-----CCCHHHHH
Confidence 2223332222111 123455666666666666665 33221 1110122343 3332 34455555
Q ss_pred HHHHHCCceeccCCCCEEEEeccCCCCHHHHHHHHHHHHHHH
Q psy6547 217 IKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTI 258 (266)
Q Consensus 217 ~~l~~~gi~~~~~~~~~iR~~~~~~~t~~~i~~~~~~l~~~~ 258 (266)
..-.+..|+++.- + |+|.. ..+...++.+.+.|-.+.
T Consensus 387 ~l~ke~~iYmT~d--G--RiS~a-G~ss~nV~yLa~aih~vt 423 (427)
T KOG1411|consen 387 WLTKEYHIYLTKD--G--RISMA-GLSSSNVPYLADAIHAVT 423 (427)
T ss_pred HHHhhheeeeccC--c--eEeec-cccccCCcccchhhHhHh
Confidence 5556778888753 3 55644 345566677777766544
No 391
>KOG2040|consensus
Probab=96.56 E-value=0.15 Score=46.86 Aligned_cols=195 Identities=14% Similarity=0.154 Sum_probs=115.2
Q ss_pred CCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCcccccccCCCCcCeee-----eccccc-
Q psy6547 39 PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVI-----LGKALS- 112 (266)
Q Consensus 39 ~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~~~~~~~~~~d~~~-----~sK~~~- 112 (266)
+++..+++..+. ..|.+. +..++.+.++..|..+++---.-.+. ..-+-..+ ..|+.+ |+-.+|
T Consensus 246 ~~v~gvlvQYP~-t~G~i~----d~~el~~~a~~~~s~vv~atDLLaLt---iLrpPgef--GaDIavGSsQRFGVPlGY 315 (1001)
T KOG2040|consen 246 KDVSGVLVQYPD-TEGSVL----DFDELVELAHANGSLVVMATDLLALT---ILRPPGEF--GADIAVGSSQRFGVPLGY 315 (1001)
T ss_pred cceeEEEEEcCC-CCCccc----CHHHHHHHhhccCceEEEeehhhHHH---ccCChhhc--CceeeeccccccCccccC
Confidence 367777776444 356666 89999999999998877431111110 00011223 345555 555566
Q ss_pred CCchhhhhheecHHhhhccCCCCCCCCC------------------------CCcHHHHHHHHHHHHHH-----hh---c
Q psy6547 113 GGLYPISAVLADDEVMGTLVPGTHGSTY------------------------GGNPLACKLAMTALDVI-----LE---E 160 (266)
Q Consensus 113 ~g~~~~g~~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~~~a~~~~l~~~-----~~---~ 160 (266)
|| --.|+..+++++.+.+.....+.+- +.|--.+.|.++.+..+ .. +
T Consensus 316 GG-PHAaFfAv~~~l~R~mPGRiiGvtkD~~gk~a~RLALQTREQHIrRDKATSNICTAQALLANmaAmyaiYHGp~gL~ 394 (1001)
T KOG2040|consen 316 GG-PHAAFFAVSESLVRMMPGRIIGVTKDALGKEAYRLALQTREQHIRRDKATSNICTAQALLANMAAMYAIYHGPHGLK 394 (1001)
T ss_pred CC-chHHHHHHHHHHHhhCCCceEeeeecccccHHHHHHHHHHHHHhhhhccchhhhHHHHHHHHHHHHHhhhcCcHHHH
Confidence 66 5677888887777666433111111 11211222333333221 11 2
Q ss_pred cHHHHHHHHHHHHHHHhhcccccCCCcccEEecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccCCCCEEEEeccC
Q psy6547 161 NMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPISNNIIRLSPAL 240 (266)
Q Consensus 161 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~iR~~~~~ 240 (266)
++.+++...+..+...|+. .+...+-. .. |=.+.+.- +.+.+++..+..+++|-++-...+.+-+++.-
T Consensus 395 ~IArrvh~~T~~l~~~l~~-aghel~~k-----~f---FDTLkI~~--~~s~~~~l~rA~~~~iNlr~~ed~tigvslDE 463 (1001)
T KOG2040|consen 395 EIARRVHNLTLILAEGLKN-AGHELQHK-----PF---FDTLKIRC--GCSAEEVLDRAAKRQINLRLVEDGTIGVSLDE 463 (1001)
T ss_pred HHHHHHHHHHHHHHHHHhh-cchhhccc-----cc---cceEEEEe--cCcHHHHHHHHHhhcCceEEeecCceEEeecc
Confidence 3556666777777777776 44322211 12 32233222 33789999999999999998888899999999
Q ss_pred CCCHHHHHHHHHHHH
Q psy6547 241 NITEQELREGLDIII 255 (266)
Q Consensus 241 ~~t~~~i~~~~~~l~ 255 (266)
..+++|++.++..+.
T Consensus 464 Tv~~~DvddLl~vf~ 478 (1001)
T KOG2040|consen 464 TVTEKDVDDLLWVFN 478 (1001)
T ss_pred cccHHHHHHHHHHHc
Confidence 999999999998875
No 392
>KOG3843|consensus
Probab=96.15 E-value=0.0093 Score=48.52 Aligned_cols=54 Identities=15% Similarity=0.231 Sum_probs=38.0
Q ss_pred CHHHHHHHHhcCC-CEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccc
Q psy6547 27 DVDALEAKLKSNP-NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQ 83 (266)
Q Consensus 27 d~~~l~~~l~~~~-~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~ 83 (266)
|++++++.+++-. +.-+.+.. ..++- .+-+++.+++|..+|..|+++-++.++|
T Consensus 142 dleav~~~iee~g~dcilci~s-ttscf--apr~pd~leaiaaica~~diphivnnay 196 (432)
T KOG3843|consen 142 DLEAVEAIIEELGEDCILCIHS-TTSCF--APRSPDNLEAIAAICAAHDIPHIVNNAY 196 (432)
T ss_pred hHHHHHHHHHHhCCceEEEEee-ccccc--CCCCCchHHHHHHHHHccCchhhhcccc
Confidence 6888899887643 43333322 22221 1235789999999999999999999999
No 393
>COG4100 Cystathionine beta-lyase family protein involved in aluminum resistance [Inorganic ion transport and metabolism]
Probab=94.51 E-value=0.8 Score=38.37 Aligned_cols=112 Identities=14% Similarity=0.192 Sum_probs=72.4
Q ss_pred CCCCCCceeecCC-----CHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhc--CCEEEEeccccCc
Q psy6547 14 GPHMPGYNIIPYN-----DVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQY--NVLFIADEVQTGL 86 (266)
Q Consensus 14 ~~~~~~v~~~~~~-----d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~--g~~li~De~~~~~ 86 (266)
..++-+...+|-. |.+.++..+ .+++++|.+.-..+-.---.++.+.++++.++.++- ++.+.+|++|..|
T Consensus 136 ~dfgi~Y~~v~Lt~~gkiD~~~v~~~i--~~~tkli~IQRS~GY~~RpS~~I~eI~~~i~~vk~inpn~ivFVDNCYGEF 213 (416)
T COG4100 136 KDFGIKYKAVPLTADGKIDIQAVKTAI--SDRTKLIGIQRSKGYAWRPSLSIAEIEEMITFVKEINPNVIVFVDNCYGEF 213 (416)
T ss_pred HHhCcceeecccccCCcccHHHHHHhc--CccceEEEEEeccCcCCCCcccHHHHHHHHHHHHhcCCCEEEEEeccchhh
Confidence 3345555555533 788999999 568899987654322111114567888888888875 4888899999766
Q ss_pred CCcCcccccccCCCCcCeee--ecccccCCchhh-hhheecHHhhhccC
Q psy6547 87 GRTGKLLAIHYEDVRPDIVI--LGKALSGGLYPI-SAVLADDEVMGTLV 132 (266)
Q Consensus 87 ~~~g~~~~~~~~~~~~d~~~--~sK~~~~g~~~~-g~~~~~~~~~~~~~ 132 (266)
--.- +...+..|++. +=|-.|||+... |++.+.+++.+...
T Consensus 214 vE~~-----EPt~vGaDliAGSLIKNpGGgiaktGGYiaGk~~~ve~~~ 257 (416)
T COG4100 214 VEEK-----EPTHVGADLIAGSLIKNPGGGIAKTGGYIAGKAELVEAAA 257 (416)
T ss_pred hhcc-----CccccchhhhccceeeCCCCceeeccceeechHHHHHhhc
Confidence 2111 11234555554 668888885444 57888888887654
No 394
>KOG2790|consensus
Probab=93.12 E-value=1.3 Score=36.87 Aligned_cols=109 Identities=11% Similarity=-0.008 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHhhc----cHHHHHHHHHHHHHHHhhccccc--CCCcccEEecCccceeeEEEEeeCccchHHHHHHHHH
Q psy6547 147 CKLAMTALDVILEE----NMIENAYKMGEIFRSELSSPANK--SKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMK 220 (266)
Q Consensus 147 ~~a~~~~l~~~~~~----~~~~~~~~~~~~l~~~l~~~~~~--~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~ 220 (266)
.-+..-.++++.+. .+.+...+..+.+.+.+++.-+. ..+....++ -+ -+.|.+.+ ..-..+|.++..
T Consensus 253 iy~~~Lv~~~il~~GGl~a~e~~n~~KskllYd~iD~s~gfy~cpVe~~~RS-~M---NV~Fri~~--d~Le~eFLkeA~ 326 (370)
T KOG2790|consen 253 IYVMGLVFEWILEKGGLAAMEKLNQEKSKLLYDAIDNSNGFYRCPVEPSVRS-RM---NVPFRIEK--DELEAEFLKEAA 326 (370)
T ss_pred eeehhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhcCCeEEcccchhhhh-hc---ccceeecc--hHHHHHHHHHHH
Confidence 33334455666553 24455566777888888872222 111111222 22 24455554 223466777777
Q ss_pred HCCceeccC--CCCEEEEeccCCCCHHHHHHHHHHHHHHHHHH
Q psy6547 221 DAGLVTKPI--SNNIIRLSPALNITEQELREGLDIIINTINTM 261 (266)
Q Consensus 221 ~~gi~~~~~--~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~ 261 (266)
+++.+-.-+ +.+.+|-|+.-+.+.++.+++++-++++.+.+
T Consensus 327 ~~~mv~LKGhRSVGGiRASlYNAisv~~~q~L~~~m~~F~k~h 369 (370)
T KOG2790|consen 327 KEHMVQLKGHRSVGGIRASLYNAISVEEVQKLAAFMKEFQKKH 369 (370)
T ss_pred HhhhhccccccccccchhhhhccccHHHHHHHHHHHHHHHHhc
Confidence 777665433 46889999999999999999998888877653
No 395
>PF06153 DUF970: Protein of unknown function (DUF970); InterPro: IPR010375 This is a family of uncharacterised bacterial proteins.; PDB: 3M05_A.
Probab=83.35 E-value=1.6 Score=30.88 Aligned_cols=48 Identities=15% Similarity=0.313 Sum_probs=35.0
Q ss_pred chHHHHHHHHHHCCceeccC---------CCCEEEEeccCCCCHHHHHHHHHHHHHHHHHH
Q psy6547 210 LEVYDVCIKMKDAGLVTKPI---------SNNIIRLSPALNITEQELREGLDIIINTINTM 261 (266)
Q Consensus 210 ~~~~~~~~~l~~~gi~~~~~---------~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~ 261 (266)
.|+..+.+.|.++|+.++-. ++.++.+. .+++++++.++.|++.+++.
T Consensus 11 ~Da~~l~~~L~~~g~~~TkLsstGGFLr~GNtTlliG----vede~v~~vl~iIk~~c~~R 67 (109)
T PF06153_consen 11 EDADDLSDALNENGFRVTKLSSTGGFLREGNTTLLIG----VEDEKVDEVLEIIKENCKKR 67 (109)
T ss_dssp HHHHHHHHHHHHTT--EEEEEEEETTTTEEEEEEEEE----EEGGGHHHHHHHHHHHH--E
T ss_pred hhHHHHHHHHHHCCceEEEEecccceeccCCEEEEEE----ecHHHHHHHHHHHHHhhcCc
Confidence 48999999999999988731 33455555 78899999999999987753
No 396
>smart00642 Aamy Alpha-amylase domain.
Probab=81.31 E-value=7.7 Score=29.72 Aligned_cols=60 Identities=17% Similarity=0.161 Sum_probs=42.2
Q ss_pred CHHHHHHHHhc--CCCEEEEEEccccCCCCc-----------------ccCChHHHHHHHHHHHhcCCEEEEeccccCc
Q psy6547 27 DVDALEAKLKS--NPNICAFMVEPIQGEAGA-----------------VVPDDGYLKKVRALCSQYNVLFIADEVQTGL 86 (266)
Q Consensus 27 d~~~l~~~l~~--~~~~~~i~~~~~~~~~g~-----------------~~~~~~~l~~l~~l~~~~g~~li~De~~~~~ 86 (266)
|++.+.+.|.. .-.+.+|.+.|++..... ..-+.+.++++++-||++|+-||+|=+..+.
T Consensus 17 ~~~gi~~~l~yl~~lG~~~I~l~Pi~~~~~~~~~~~gY~~~d~~~i~~~~Gt~~d~~~lv~~~h~~Gi~vilD~V~NH~ 95 (166)
T smart00642 17 DLQGIIEKLDYLKDLGVTAIWLSPIFESPQGYPSYHGYDISDYKQIDPRFGTMEDFKELVDAAHARGIKVILDVVINHT 95 (166)
T ss_pred CHHHHHHHHHHHHHCCCCEEEECcceeCCCCCCCCCCcCccccCCCCcccCCHHHHHHHHHHHHHCCCEEEEEECCCCC
Confidence 56666655422 226889999987443320 1235578999999999999999999888654
No 397
>COG3870 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=79.47 E-value=14 Score=25.48 Aligned_cols=49 Identities=6% Similarity=0.119 Sum_probs=37.4
Q ss_pred chHHHHHHHHHHCCceecc--C-------CCCEEEEeccCCCCHHHHHHHHHHHHHHHHHHh
Q psy6547 210 LEVYDVCIKMKDAGLVTKP--I-------SNNIIRLSPALNITEQELREGLDIIINTINTMA 262 (266)
Q Consensus 210 ~~~~~~~~~l~~~gi~~~~--~-------~~~~iR~~~~~~~t~~~i~~~~~~l~~~~~~~~ 262 (266)
.++.++.+.|.++|+-++- . ++..+.+. ..+++++.+...|++.++...
T Consensus 11 ~da~~l~~~L~d~~fraTkLAsTGGFlkaGNTTfliG----ved~~vd~~~s~Ike~C~~re 68 (109)
T COG3870 11 QDANELEDALTDKNFRATKLASTGGFLKAGNTTFLIG----VEDDRVDALRSLIKENCKSRE 68 (109)
T ss_pred ccHHHHHHHHHhCCceeEEeeccCceeecCCeEEEEe----cccchhHHHHHHHHHHhhhHh
Confidence 4789999999999987652 1 33445555 788899999999999887653
No 398
>PF03652 UPF0081: Uncharacterised protein family (UPF0081); InterPro: IPR005227 Holliday junction resolvases (HJRs) are key enzymes of DNA recombination. The principal HJRs are now known or confidently predicted for all bacteria and archaea whose genomes have been completely sequenced, with many species encoding multiple potential HJRs. Structural and evolutionary relationships of HJRs and related nucleases suggests that the HJR function has evolved independently from at least four distinct structural folds, namely RNase H, endonuclease, endonuclease VII-colicin E and RusA (IPR008822 from INTERPRO): The endonuclease fold, whose structural prototypes are the phage exonuclease, the very short patch repair nuclease (Vsr) and type II restriction enzymes, is shown to encompass by far a greater diversity of nucleases than previously suspected. This fold unifies archaeal HJRs (IPR002732 from INTERPRO), repair nucleases such as RecB (IPR004586 from INTERPRO) and Vsr (IPR004603 from INTERPRO), restriction enzymes and a variety of predicted nucleases whose specific activities remain to be determined. The RNase H fold characterises the RuvC family (IPR002176 from INTERPRO), which is nearly ubiquitous in bacteria, and in addition the YqgF family (IPR005227 from INTERPRO). The proteins of this family, typified by Escherichia coli YqgF, are likely to function as an alternative to RuvC in most bacteria, but could be the principal HJRs in low-GC Gram-positive bacteria and Aquifex. Endonuclease VII of phage T4 (IPR004211 from INTERPRO) is shown to serve as a structural template for many nucleases, including McrA and other type II restriction enzymes. Together with colicin E7, endonuclease VII defines a distinct metal-dependent nuclease fold. Horizontal gene transfer, lineage-specific gene loss and gene family expansion, and non-orthologous gene displacement seem to have been major forces in the evolution of HJRs and related nucleases. A remarkable case of displacement is seen in the Lyme disease spirochete Borrelia burgdorferi, which does not possess any of the typical HJRs, but instead encodes, in its chromosome and each of the linear plasmids, members of the exonuclease family predicted to function as HJRs. The diversity of HJRs and related nucleases in bacteria and archaea contrasts with their near absence in eukaryotes. The few detected eukaryotic representatives of the endonuclease fold and the RNase H fold have probably been acquired from bacteria via horizontal gene transfer. The identity of the principal HJR(s) involved in recombination in eukaryotes remains uncertain; this function could be performed by topoisomerase IB or by a novel, so far undetected, class of enzymes. Likely HJRs and related nucleases were identified in the genomes of numerous bacterial and eukaryotic DNA viruses. Gene flow between viral and cellular genomes has probably played a major role in the evolution of this class of enzymes. This family represents the YqgF family of putative Holliday junction resolvases. With the exception of the spirochetes, the YqgF family is represented in all bacterial lineages, including the mycoplasmas with their highly degenerate genomes. The RuvC resolvases are conspicuously absent in the low-GC Gram-positive bacterial lineage, with the exception of Ureaplasma parvum (Ureaplasma urealyticum biotype 1) (Q9PQY7 from SWISSPROT, []). Furthermore, loss of function ruvC mutants of E. coli show a residual HJR activity that cannot be ascribed to the prophage-encoded RusA resolvase []. This suggests that the YqgF family proteins could be alternative HJRs whose function partially overlaps with that of RuvC [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0006281 DNA repair, 0006310 DNA recombination, 0006974 response to DNA damage stimulus, 0005737 cytoplasm; PDB: 1NU0_A 1OVQ_A 1NMN_B 1VHX_B 1IV0_A.
Probab=77.92 E-value=14 Score=27.23 Aligned_cols=58 Identities=17% Similarity=0.224 Sum_probs=37.1
Q ss_pred CCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHH-HHhc-CCEEE-Eecccc
Q psy6547 26 NDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRAL-CSQY-NVLFI-ADEVQT 84 (266)
Q Consensus 26 ~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l-~~~~-g~~li-~De~~~ 84 (266)
.+.+.|.+++++. ++..+++--+.++.|.........++.++. ..++ +++|+ +||-++
T Consensus 38 ~~~~~l~~li~~~-~i~~iVvGlP~~~~G~~~~~~~~v~~f~~~L~~~~~~ipV~~~DEr~T 98 (135)
T PF03652_consen 38 KDIEELKKLIEEY-QIDGIVVGLPLNMDGSESEQARRVRKFAEELKKRFPGIPVILVDERLT 98 (135)
T ss_dssp CCHHHHHHHHHHC-CECEEEEEEEBBCTSSC-CCHHHHHHHHHHHHHHH-TSEEEEEECSCS
T ss_pred hHHHHHHHHHHHh-CCCEEEEeCCcccCCCccHHHHHHHHHHHHHHHhcCCCcEEEECCChh
Confidence 3799999999776 466666555555555544444455554444 4444 88877 999985
No 399
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=73.49 E-value=4.7 Score=37.66 Aligned_cols=33 Identities=18% Similarity=0.091 Sum_probs=29.5
Q ss_pred CChHHHHHHHHHHHhcCCEEEEeccccCcCCcC
Q psy6547 58 PDDGYLKKVRALCSQYNVLFIADEVQTGLGRTG 90 (266)
Q Consensus 58 ~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g 90 (266)
-+++.++++++-||++||-||+|=|+..|+..|
T Consensus 211 GtPedfk~fVD~aH~~GIgViLD~V~~HF~~d~ 243 (628)
T COG0296 211 GTPEDFKALVDAAHQAGIGVILDWVPNHFPPDG 243 (628)
T ss_pred CCHHHHHHHHHHHHHcCCEEEEEecCCcCCCCc
Confidence 578999999999999999999999998886544
No 400
>PRK11633 cell division protein DedD; Provisional
Probab=68.19 E-value=34 Score=27.70 Aligned_cols=59 Identities=14% Similarity=0.202 Sum_probs=44.9
Q ss_pred eeEEEEeeCc-cchHHHHHHHHHHCCceecc-----CCCCEEEEeccCCCCHHHHHHHHHHHHHH
Q psy6547 199 INTLILSVSA-ILEVYDVCIKMKDAGLVTKP-----ISNNIIRLSPALNITEQELREGLDIIINT 257 (266)
Q Consensus 199 ~~~~~~~~~~-~~~~~~~~~~l~~~gi~~~~-----~~~~~iR~~~~~~~t~~~i~~~~~~l~~~ 257 (266)
-|.+++..-. ..++..+..+|+..|+-.+. ..+.+.|+..+-..++++++++..+|++.
T Consensus 149 ~~vVQlgaf~n~~~A~~l~~kL~~~G~~Ay~~~~~~~~G~~tRV~VGP~~sk~~ae~~~~~Lk~~ 213 (226)
T PRK11633 149 AYVVQLGALKNADKVNEIVAKLRLSGYRVYTVPSTPVQGKITRIYVGPDASKDKLKGSLGELKQL 213 (226)
T ss_pred cEEEEecccCCHHHHHHHHHHHHHCCCeeEEEeeecCCCcEEEEEeCCCCCHHHHHHHHHHHHHh
Confidence 3666665422 34688899999999997653 34457788777889999999999999874
No 401
>COG1105 FruK Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) [Carbohydrate transport and metabolism]
Probab=67.67 E-value=17 Score=30.94 Aligned_cols=26 Identities=12% Similarity=0.006 Sum_probs=23.2
Q ss_pred CChHHHHHHHHHHHhcCCEEEEeccc
Q psy6547 58 PDDGYLKKVRALCSQYNVLFIADEVQ 83 (266)
Q Consensus 58 ~~~~~l~~l~~l~~~~g~~li~De~~ 83 (266)
++.+++.++.++|++.|+.+++|-.-
T Consensus 143 ~~~d~y~~li~~~~~~g~~vilD~Sg 168 (310)
T COG1105 143 VPPDAYAELIRILRQQGAKVILDTSG 168 (310)
T ss_pred CCHHHHHHHHHHHHhcCCeEEEECCh
Confidence 67899999999999999999999433
No 402
>KOG3974|consensus
Probab=66.10 E-value=15 Score=30.36 Aligned_cols=61 Identities=21% Similarity=0.259 Sum_probs=44.2
Q ss_pred CCCCCCceeecCC----CHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEe
Q psy6547 14 GPHMPGYNIIPYN----DVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIAD 80 (266)
Q Consensus 14 ~~~~~~v~~~~~~----d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~D 80 (266)
..|-|+.+.-|+- +.+.++.++ . +.-++++-|..+....+ ...++.|.+.+++.++++|+|
T Consensus 74 KsYsPdLIVHP~l~~~~av~~i~k~L--~-RlhavVIGPGLGRdp~~---~k~i~~iley~~~~dvP~VID 138 (306)
T KOG3974|consen 74 KSYSPDLIVHPVLDQENAVDIIEKLL--Q-RLHAVVIGPGLGRDPAI---LKEIAKILEYLRGKDVPLVID 138 (306)
T ss_pred hhcCCceeecccccCCchHhHHHHHH--h-heeEEEECCCCCCCHHH---HHHHHHHHHHHhcCCCcEEEc
Confidence 3455666666643 356666667 2 68899999987664333 358889999999999999999
No 403
>COG0616 SppA Periplasmic serine proteases (ClpP class) [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=65.80 E-value=8.1 Score=33.05 Aligned_cols=55 Identities=20% Similarity=0.344 Sum_probs=39.1
Q ss_pred HHHHHHHHh---cCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccc
Q psy6547 28 VDALEAKLK---SNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQ 83 (266)
Q Consensus 28 ~~~l~~~l~---~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~ 83 (266)
.+..++.++ .++++++|++- +++|+|.+..+..-.++|.++..+.-+++++++.-
T Consensus 82 ~~~~~~~l~~~~~~~~vk~vvL~-inSPGG~v~as~~i~~~l~~l~~~~PV~v~v~~~A 139 (317)
T COG0616 82 GDDIEEILRAARADPSVKAVVLR-INSPGGSVVASELIARALKRLRAKKPVVVSVGGYA 139 (317)
T ss_pred HHHHHHHHHHHhcCCCCceEEEE-EECcCCchhHHHHHHHHHHHHhhcCCEEEEECCee
Confidence 445554443 35678888876 77889999888888888888887775666666554
No 404
>PF07085 DRTGG: DRTGG domain; InterPro: IPR010766 This presumed domain is about 120 amino acids in length. It is found associated with CBS domains IPR000644 from INTERPRO, as well as the CbiA domain IPR002586 from INTERPRO. The function of this domain is unknown. It is named the DRTGG domain after some of the most conserved residues. This domain may be very distantly related to a pair of CBS domains. There are no significant sequence similarities, but its length and association with CBS domains supports this idea. ; PDB: 3L31_B 3L2B_A 2IOJ_A.
Probab=60.18 E-value=32 Score=23.85 Aligned_cols=51 Identities=16% Similarity=0.146 Sum_probs=34.1
Q ss_pred CCceeecCCCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEe
Q psy6547 18 PGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIAD 80 (266)
Q Consensus 18 ~~v~~~~~~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~D 80 (266)
..++.++-++.+.+..++.. .+++++++... . +=+.+.++|+++|++++.=
T Consensus 41 ~~lvIt~gdR~di~~~a~~~--~i~~iIltg~~-----~-----~~~~v~~la~~~~i~vi~t 91 (105)
T PF07085_consen 41 GDLVITPGDREDIQLAAIEA--GIACIILTGGL-----E-----PSEEVLELAKELGIPVIST 91 (105)
T ss_dssp TEEEEEETT-HHHHHHHCCT--TECEEEEETT--------------HHHHHHHHHHT-EEEE-
T ss_pred CeEEEEeCCcHHHHHHHHHh--CCCEEEEeCCC-----C-----CCHHHHHHHHHCCCEEEEE
Confidence 56777778888888888843 58888877322 2 5677889999999999854
No 405
>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]
Probab=60.11 E-value=22 Score=28.49 Aligned_cols=51 Identities=25% Similarity=0.356 Sum_probs=34.2
Q ss_pred HHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccc
Q psy6547 28 VDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQ 83 (266)
Q Consensus 28 ~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~ 83 (266)
++.++++++ ..+.++-+-.-...+-.. .+..+++.++|++||+++++++=.
T Consensus 24 ~~~ve~al~--~Gv~~vQlR~K~~~~~~~---~~~a~~~~~lc~~~~v~liINd~~ 74 (211)
T COG0352 24 LEWVEAALK--GGVTAVQLREKDLSDEEY---LALAEKLRALCQKYGVPLIINDRV 74 (211)
T ss_pred HHHHHHHHh--CCCeEEEEecCCCChHHH---HHHHHHHHHHHHHhCCeEEecCcH
Confidence 789999994 345555544332222111 457789999999999999987544
No 406
>PRK10785 maltodextrin glucosidase; Provisional
Probab=59.46 E-value=30 Score=32.50 Aligned_cols=61 Identities=23% Similarity=0.334 Sum_probs=44.3
Q ss_pred CHHHHHHHHhc--CCCEEEEEEccccCCCCc-------------ccCChHHHHHHHHHHHhcCCEEEEeccccCcC
Q psy6547 27 DVDALEAKLKS--NPNICAFMVEPIQGEAGA-------------VVPDDGYLKKVRALCSQYNVLFIADEVQTGLG 87 (266)
Q Consensus 27 d~~~l~~~l~~--~~~~~~i~~~~~~~~~g~-------------~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~ 87 (266)
|++.+.+.|.- .-.+.+|.++|+....+. .+-+.+.+++|++.||++|+-||+|-+..+.+
T Consensus 177 Dl~GI~~kLdYL~~LGv~~I~L~Pif~s~s~hgYd~~Dy~~iDp~~Gt~~df~~Lv~~aH~rGikVilD~V~NH~~ 252 (598)
T PRK10785 177 DLDGISEKLPYLKKLGVTALYLNPIFTAPSVHKYDTEDYRHVDPQLGGDAALLRLRHATQQRGMRLVLDGVFNHTG 252 (598)
T ss_pred CHHHHHHHHHHHHHcCCCEEEeCCcccCCCCCCcCcccccccCcccCCHHHHHHHHHHHHHCCCEEEEEECCCcCC
Confidence 67777766632 227899999997544321 01245789999999999999999999986543
No 407
>TIGR00789 flhB_rel flhB C-terminus-related protein. This model describes a short protein (80-93 residues) homologous to the C-terminus of the flagellar biosynthetic protein FlhB. It is found so far only in species that also have FlhB. In a phylogenetic tree based on alignment of both this family and the homologous region of FlhB and its homologs, the members of this family form a monophyletic set.
Probab=59.03 E-value=9.1 Score=25.55 Aligned_cols=24 Identities=4% Similarity=0.130 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHhcCCEEEEecccc
Q psy6547 61 GYLKKVRALCSQYNVLFIADEVQT 84 (266)
Q Consensus 61 ~~l~~l~~l~~~~g~~li~De~~~ 84 (266)
..=++|+++|+++|++++.|....
T Consensus 27 ~~A~~I~~~A~e~~VPi~~~~~LA 50 (82)
T TIGR00789 27 EVAERIIEIAKKHGIPIVEDPDLV 50 (82)
T ss_pred HHHHHHHHHHHHcCCCEEeCHHHH
Confidence 367899999999999999997763
No 408
>PRK00109 Holliday junction resolvase-like protein; Reviewed
Probab=58.75 E-value=39 Score=24.98 Aligned_cols=57 Identities=19% Similarity=0.180 Sum_probs=31.4
Q ss_pred CHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHH-HhcCCEEE-Eecccc
Q psy6547 27 DVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALC-SQYNVLFI-ADEVQT 84 (266)
Q Consensus 27 d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~-~~~g~~li-~De~~~ 84 (266)
+.+.|.+++++. ++..|++--+.++.|.........+..++.. ++.+++++ +||-++
T Consensus 42 ~~~~l~~~i~~~-~i~~iVvGlP~~~~G~~~~~~~~v~~f~~~L~~~~~~~v~~~DEr~T 100 (138)
T PRK00109 42 DWDRLEKLIKEW-QPDGLVVGLPLNMDGTEGPRTERARKFANRLEGRFGLPVVLVDERLS 100 (138)
T ss_pred HHHHHHHHHHHh-CCCEEEEeccCCCCCCcCHHHHHHHHHHHHHHHHhCCCEEEEcCCcC
Confidence 378888888665 4555665544455555422222233333222 33466655 899885
No 409
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=58.49 E-value=24 Score=27.25 Aligned_cols=52 Identities=21% Similarity=0.341 Sum_probs=28.7
Q ss_pred HHHHHHHHhcCCCEEEEEEccccCCCCc-ccCC---hHHHHHHHHHHHhcCCEEEE
Q psy6547 28 VDALEAKLKSNPNICAFMVEPIQGEAGA-VVPD---DGYLKKVRALCSQYNVLFIA 79 (266)
Q Consensus 28 ~~~l~~~l~~~~~~~~i~~~~~~~~~g~-~~~~---~~~l~~l~~l~~~~g~~li~ 79 (266)
.+.+++.+++..++.+|++.+...-.+. .--. ...++.+.++|+++|+.+++
T Consensus 129 ~~~l~~~~~~~~~~~lvviD~l~~~~~~~~~~~~~~~~~~~~l~~la~~~~~~vi~ 184 (193)
T PF13481_consen 129 LEELEAALKELYGPDLVVIDPLQSLHDGDENSNSAVAQLMQELKRLAKEYGVAVIL 184 (193)
T ss_dssp HHHHHHHHTT----SEEEEE-GGGG--S-TT-HHHHHHHHHHHHHHHHHH--EEEE
T ss_pred HHHHHHHHhhcCCCcEEEEcCHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCEEEE
Confidence 5667777755346889999886544322 1111 35788889999999977663
No 410
>PF02677 DUF208: Uncharacterized BCR, COG1636; InterPro: IPR003828 This entry describes proteins of unknown function.
Probab=57.87 E-value=22 Score=27.51 Aligned_cols=52 Identities=10% Similarity=0.192 Sum_probs=37.7
Q ss_pred HHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccc
Q psy6547 28 VDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQ 83 (266)
Q Consensus 28 ~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~ 83 (266)
..-++.+.+..-++.+++.||+-.|..-. ...++++.++|++.|+.+|+++ |
T Consensus 12 ~~~~~~L~~~g~~vt~~fyNPNIhP~~Ey---~~R~~~~~~~~~~~~i~~i~~~-Y 63 (176)
T PF02677_consen 12 TYPLERLREEGFDVTGYFYNPNIHPYEEY---ERRLEELKRFAEKLGIPLIEGD-Y 63 (176)
T ss_pred HHHHHHHHHCCCCeEEEEeCCCCCcHHHH---HHHHHHHHHHHHHcCCCEEecC-C
Confidence 44566666543488999999975543322 2467888999999999999998 6
No 411
>COG0108 RibB 3,4-dihydroxy-2-butanone 4-phosphate synthase [Coenzyme metabolism]
Probab=56.41 E-value=22 Score=28.08 Aligned_cols=34 Identities=12% Similarity=0.255 Sum_probs=27.6
Q ss_pred CEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEE
Q psy6547 40 NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFI 78 (266)
Q Consensus 40 ~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li 78 (266)
..++++||-... .|.+. ..+++.++|++||+++|
T Consensus 156 ~Pa~VicEi~~~-dG~ma----r~~~~~~fa~~h~l~~i 189 (203)
T COG0108 156 KPAGVICEIMND-DGTMA----RLPELEEFAKEHGLPVI 189 (203)
T ss_pred CCcEEEEEEeCC-Ccccc----ChHHHHHHHHHcCCcEE
Confidence 568888886665 55554 88889999999999988
No 412
>PRK04452 acetyl-CoA decarbonylase/synthase complex subunit delta; Provisional
Probab=54.54 E-value=33 Score=29.39 Aligned_cols=43 Identities=21% Similarity=0.294 Sum_probs=29.3
Q ss_pred CHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEE
Q psy6547 27 DVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIA 79 (266)
Q Consensus 27 d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~ 79 (266)
|++.|++.++....-+.+ +++ .+.+.++++..+|++||..+|+
T Consensus 138 D~evleaale~~~g~~pL-InS---------at~en~~~i~~lA~~y~~~Vva 180 (319)
T PRK04452 138 DAEVLEKVAEAAEGERCL-LGS---------AEEDNYKKIAAAAMAYGHAVIA 180 (319)
T ss_pred CHHHHHHHHHHhCCCCCE-EEE---------CCHHHHHHHHHHHHHhCCeEEE
Confidence 788888888653322222 222 3356799999999999988884
No 413
>PF07894 DUF1669: Protein of unknown function (DUF1669); InterPro: IPR012461 This family is composed of sequences derived from hypothetical eukaryotic proteins of unknown function. Some members of this family are annotated as being potential phospholipases but no literature was found to support this.
Probab=53.40 E-value=41 Score=28.24 Aligned_cols=48 Identities=13% Similarity=0.250 Sum_probs=36.5
Q ss_pred HHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcC--CEEEEecccc
Q psy6547 29 DALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYN--VLFIADEVQT 84 (266)
Q Consensus 29 ~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g--~~li~De~~~ 84 (266)
|.+++.|++..++-+|++. ++-+.+.+..|.+.|.+.+ ++|+.|+...
T Consensus 137 E~vR~~I~~A~kVIAIVMD--------~FTD~dIf~DLleAa~kR~VpVYiLLD~~~~ 186 (284)
T PF07894_consen 137 EVVRRMIQQAQKVIAIVMD--------VFTDVDIFCDLLEAANKRGVPVYILLDEQNL 186 (284)
T ss_pred HHHHHHHHHhcceeEEEee--------ccccHHHHHHHHHHHHhcCCcEEEEechhcC
Confidence 5677778666678888777 4567789999999997777 5567898874
No 414
>TIGR00250 RNAse_H_YqgF RNAse H-fold protein YqgF. This protein family, which exhibits an RNAse H fold in crystal structure, has been proposed as a putative Holliday junction resolvase, an alternate to RuvC.
Probab=53.06 E-value=40 Score=24.60 Aligned_cols=54 Identities=19% Similarity=0.161 Sum_probs=32.1
Q ss_pred CHHHHHHHHhcCCCEEEEEEccccCCCCcccCCh----HHHHHHHHHHHhcCCEEE-Eecccc
Q psy6547 27 DVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDD----GYLKKVRALCSQYNVLFI-ADEVQT 84 (266)
Q Consensus 27 d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~----~~l~~l~~l~~~~g~~li-~De~~~ 84 (266)
+.+.|++++++.+ +..|++--+.++.|...... ++.++| .+++++++. +||-++
T Consensus 36 ~~~~l~~~i~~~~-~~~iVvGlP~~~dG~~~~~a~~v~~f~~~L---~~~~~~~v~~~DEr~T 94 (130)
T TIGR00250 36 DWSRIEELLKEWT-PDKIVVGLPLNMDGTEGPLTERAQKFANRL---EGRFGVPVVLWDERLS 94 (130)
T ss_pred HHHHHHHHHHHcC-CCEEEEeccCCCCcCcCHHHHHHHHHHHHH---HHHhCCCEEEEcCCcC
Confidence 4788999987664 56666555555566543211 333333 344576655 899885
No 415
>cd04915 ACT_AK-Ectoine_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and various other halotolerant or halophilic bacteria. Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinas
Probab=52.92 E-value=44 Score=20.95 Aligned_cols=46 Identities=7% Similarity=0.132 Sum_probs=34.2
Q ss_pred hHHHHHHHHHHCCceec--cCCCCEEEEeccCCCCHHHHHHHHHHHHHHH
Q psy6547 211 EVYDVCIKMKDAGLVTK--PISNNIIRLSPALNITEQELREGLDIIINTI 258 (266)
Q Consensus 211 ~~~~~~~~l~~~gi~~~--~~~~~~iR~~~~~~~t~~~i~~~~~~l~~~~ 258 (266)
-..++.+.|.+.||-+. ..+..-++++ +..++++.+++++.|-+.+
T Consensus 17 v~~ki~~~L~~~~I~v~~i~~~~s~~~is--~~V~~~~~~~av~~Lh~~f 64 (66)
T cd04915 17 VLARGLAALAEAGIEPIAAHQSMRNVDVQ--FVVDRDDYDNAIKALHAAL 64 (66)
T ss_pred HHHHHHHHHHHCCCCEEEEEecCCeeEEE--EEEEHHHHHHHHHHHHHHH
Confidence 35678888999999884 3344556666 5578899999999987654
No 416
>PRK10927 essential cell division protein FtsN; Provisional
Probab=52.76 E-value=86 Score=26.71 Aligned_cols=58 Identities=10% Similarity=-0.036 Sum_probs=44.3
Q ss_pred eEEEEeeCc-cchHHHHHHHHHHCCceeccC-CCCEEEEeccCCCCHHHHHHHHHHHHHH
Q psy6547 200 NTLILSVSA-ILEVYDVCIKMKDAGLVTKPI-SNNIIRLSPALNITEQELREGLDIIINT 257 (266)
Q Consensus 200 ~~~~~~~~~-~~~~~~~~~~l~~~gi~~~~~-~~~~iR~~~~~~~t~~~i~~~~~~l~~~ 257 (266)
+.+.++.-. ..+++.+..+|...|+-.... ++++.|+.++-..++++++++.++|+..
T Consensus 248 ~~VQvGSF~n~~nAE~LrAkLa~~G~~A~I~~~g~~~RVrVGPf~sr~eAe~a~~rLk~a 307 (319)
T PRK10927 248 WMVQCGSFRGAEQAETVRAQLAFEGFDSKITTNNGWNRVVIGPVKGKENADSTLNRLKMA 307 (319)
T ss_pred EEEEeCccCCHHHHHHHHHHHHHcCCeeEEccCCcEEEEEeCCCCCHHHHHHHHHHHHHC
Confidence 566665422 347889999999999866532 3568888888889999999999999863
No 417
>PLN03244 alpha-amylase; Provisional
Probab=52.72 E-value=26 Score=33.86 Aligned_cols=31 Identities=13% Similarity=0.086 Sum_probs=27.6
Q ss_pred CChHHHHHHHHHHHhcCCEEEEeccccCcCC
Q psy6547 58 PDDGYLKKVRALCSQYNVLFIADEVQTGLGR 88 (266)
Q Consensus 58 ~~~~~l~~l~~l~~~~g~~li~De~~~~~~~ 88 (266)
.+++.++++++.||++|+-||+|=|++.++.
T Consensus 438 GTPeDLK~LVD~aH~~GI~VILDvV~NH~~~ 468 (872)
T PLN03244 438 GTPDDFKRLVDEAHGLGLLVFLDIVHSYAAA 468 (872)
T ss_pred CCHHHHHHHHHHHHHCCCEEEEEecCccCCC
Confidence 4578999999999999999999999977654
No 418
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=51.90 E-value=51 Score=26.33 Aligned_cols=60 Identities=18% Similarity=0.112 Sum_probs=40.4
Q ss_pred cCCCCCCceeecCCCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEE
Q psy6547 13 FGPHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIA 79 (266)
Q Consensus 13 ~~~~~~~v~~~~~~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~ 79 (266)
++..+..++..++.|.+.|.++++ .--.++++.+..+ . ...+....+.+.|++.|+-.++
T Consensus 40 l~~~g~~vv~~d~~~~~~l~~al~--g~d~v~~~~~~~~-~----~~~~~~~~li~Aa~~agVk~~v 99 (233)
T PF05368_consen 40 LQALGAEVVEADYDDPESLVAALK--GVDAVFSVTPPSH-P----SELEQQKNLIDAAKAAGVKHFV 99 (233)
T ss_dssp HHHTTTEEEES-TT-HHHHHHHHT--TCSEEEEESSCSC-C----CHHHHHHHHHHHHHHHT-SEEE
T ss_pred hhcccceEeecccCCHHHHHHHHc--CCceEEeecCcch-h----hhhhhhhhHHHhhhccccceEE
Confidence 445677899999999999999994 3234555665443 1 2345788899999999976663
No 419
>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.
Probab=51.72 E-value=47 Score=30.78 Aligned_cols=60 Identities=12% Similarity=0.107 Sum_probs=42.4
Q ss_pred CHHHHHHHHhc--CCCEEEEEEccccCCCC---cc-----------cCChHHHHHHHHHHHhcCCEEEEeccccCc
Q psy6547 27 DVDALEAKLKS--NPNICAFMVEPIQGEAG---AV-----------VPDDGYLKKVRALCSQYNVLFIADEVQTGL 86 (266)
Q Consensus 27 d~~~l~~~l~~--~~~~~~i~~~~~~~~~g---~~-----------~~~~~~l~~l~~l~~~~g~~li~De~~~~~ 86 (266)
|+..+.+.|+- .-.+.+|.+.|++..++ .+ .-+.+.++++++.||++|+-||+|=+..+.
T Consensus 25 ~~~gi~~~l~yl~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~id~~~Gt~~~~~~lv~~ah~~gi~vilD~v~NH~ 100 (543)
T TIGR02403 25 DLRGIIEKLDYLKKLGVDYIWLNPFYVSPQKDNGYDVSDYYAINPLFGTMADFEELVSEAKKRNIKIMLDMVFNHT 100 (543)
T ss_pred CHHHHHHhHHHHHHcCCCEEEECCcccCCCCCCCCCccccCccCcccCCHHHHHHHHHHHHHCCCEEEEEECcccc
Confidence 56666655532 22688999999754431 11 124578999999999999999999888654
No 420
>COG1377 FlhB Flagellar biosynthesis pathway, component FlhB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=51.49 E-value=20 Score=31.16 Aligned_cols=45 Identities=13% Similarity=0.163 Sum_probs=31.9
Q ss_pred CCCEEEEEEccccCCCCcccCChH--------------HHHHHHHHHHhcCCEEEEeccc
Q psy6547 38 NPNICAFMVEPIQGEAGAVVPDDG--------------YLKKVRALCSQYNVLFIADEVQ 83 (266)
Q Consensus 38 ~~~~~~i~~~~~~~~~g~~~~~~~--------------~l~~l~~l~~~~g~~li~De~~ 83 (266)
-|+-.+|+.||.|-.-+.. |+++ .=-+|+++|++||++++.|-..
T Consensus 260 Vp~AdvVItNPTH~AVAlk-Y~~~~~~AP~VvAKG~d~~AlkIreiA~e~~Ipi~enppL 318 (363)
T COG1377 260 VPKADVVITNPTHYAVALK-YDPEKMPAPVVVAKGVDLVALKIREIAKEHGIPIIENPPL 318 (363)
T ss_pred CCCCCEEeeCcCceeeeee-eccccCCCCEEEEeCCcHHHHHHHHHHHHcCCceecChHH
Confidence 4567888899987544333 3322 3457999999999999999544
No 421
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=51.12 E-value=28 Score=27.94 Aligned_cols=63 Identities=17% Similarity=0.232 Sum_probs=36.4
Q ss_pred CCceeecCCCHHH-------HHHHHhcCCCEEEEEEccccCCCC-cccCC----------hHHHHHHHHHHHhcCCEEEE
Q psy6547 18 PGYNIIPYNDVDA-------LEAKLKSNPNICAFMVEPIQGEAG-AVVPD----------DGYLKKVRALCSQYNVLFIA 79 (266)
Q Consensus 18 ~~v~~~~~~d~~~-------l~~~l~~~~~~~~i~~~~~~~~~g-~~~~~----------~~~l~~l~~l~~~~g~~li~ 79 (266)
.++..+...+.++ ++..+.+.++++++++.+...... ...-. .+.+..|..+|+++++.+++
T Consensus 86 ~~i~~~~~~~~~~l~~~l~~l~~~l~~~~~~~liVIDSis~~~~~~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~avl~ 165 (235)
T cd01123 86 DNIYVARAYNSDHQLQLLEELEAILIESSRIKLVIVDSVTALFRAEFDGRGELAERQQHLAKLLRTLKRLADEFNVAVVI 165 (235)
T ss_pred cCEEEEecCCHHHHHHHHHHHHHHHhhcCCeeEEEEeCcHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHhCCEEEE
Confidence 3455555444444 334444444799999999754211 00001 13567788889999988774
Q ss_pred e
Q psy6547 80 D 80 (266)
Q Consensus 80 D 80 (266)
=
T Consensus 166 t 166 (235)
T cd01123 166 T 166 (235)
T ss_pred e
Confidence 3
No 422
>PF12138 Spherulin4: Spherulation-specific family 4; InterPro: IPR021986 This protein is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 250 and 398 amino acids in length. There is a conserved NPG sequence motif and there are two completely conserved G residues that may be functionally important. Starvation will often induce spherulation - the production of spores - and this process may involve DNA-methylation. Changes in the methylation of spherulin4 are associated with the formation of spherules, but these changes are probably transient. Methylation of the gene accompanies its transcriptional activation, and spherulin4 mRNA is only detectable in late spherulating cultures and mature spherules. It is a spherulation-specific protein.
Probab=51.02 E-value=58 Score=26.89 Aligned_cols=51 Identities=25% Similarity=0.382 Sum_probs=38.6
Q ss_pred HHHHHHHHhcCCC-EEEEEEccccCCCCc--ccCChHHHHHHHHHHHhcCCEEE
Q psy6547 28 VDALEAKLKSNPN-ICAFMVEPIQGEAGA--VVPDDGYLKKVRALCSQYNVLFI 78 (266)
Q Consensus 28 ~~~l~~~l~~~~~-~~~i~~~~~~~~~g~--~~~~~~~l~~l~~l~~~~g~~li 78 (266)
.+.|.+++.+++. .-.+++||..+++.. ..++.++..+|.++.+..|+.+|
T Consensus 18 W~~l~~a~~~~p~~~f~vIiNP~sGPG~~~~~~pd~~Y~~~i~~L~~~~nv~vl 71 (253)
T PF12138_consen 18 WDPLYDAIAAHPSVPFTVIINPNSGPGSAPDPWPDANYAAAIPRLNSYANVRVL 71 (253)
T ss_pred hHHHHHHHhcCCCCcEEEEEcCCCCCCCCCCCCCCHHHHHHHHHHHhcCCCcEE
Confidence 5566666777774 467889998888743 44888999999999777787776
No 423
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=50.94 E-value=67 Score=25.49 Aligned_cols=63 Identities=10% Similarity=0.102 Sum_probs=38.6
Q ss_pred CCCceeecCCCHHHHHHHHhc------CCCEEEEEEccccCCCCcccC-C----------hHHHHHHHHHHHhcCCEEEE
Q psy6547 17 MPGYNIIPYNDVDALEAKLKS------NPNICAFMVEPIQGEAGAVVP-D----------DGYLKKVRALCSQYNVLFIA 79 (266)
Q Consensus 17 ~~~v~~~~~~d~~~l~~~l~~------~~~~~~i~~~~~~~~~g~~~~-~----------~~~l~~l~~l~~~~g~~li~ 79 (266)
..++..+...+.+++...+++ ..++++|++.+.......... . ...+..|..+|+++++.+|+
T Consensus 85 ~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~lvVIDsis~l~~~~~~~~~~~~~~~~~l~~~~~~L~~~a~~~~~~vi~ 164 (226)
T cd01393 85 LDNIYVARPYNGEQQLEIVEELERIMSSGRVDLVVVDSVAALFRKEFIGRGMLAERARLLSQALRKLLRLADKFNVAVVF 164 (226)
T ss_pred hccEEEEeCCCHHHHHHHHHHHHHHhhcCCeeEEEEcCcchhhhhhhcCCchHHHHHHHHHHHHHHHHHHHHHhCcEEEE
Confidence 345666666676666555543 337889999987542111000 0 22456688999999988774
No 424
>TIGR00097 HMP-P_kinase phosphomethylpyrimidine kinase. This model represents phosphomethylpyrimidine kinase, the ThiD protein of thiamine biosynthesis. The protein is commonly observed within operons containing other thiamine biosynthesis genes. Numerous examples are fusion proteins with other thiamine-biosynthetic domains. Saccaromyces has three recent paralogs, two of which are isofunctional and score above the trusted cutoff. The third shows a longer branch length in a phylogenetic tree and scores below the trusted cutoff, as do putative second copies in a number of species.
Probab=50.62 E-value=56 Score=26.72 Aligned_cols=56 Identities=18% Similarity=0.138 Sum_probs=36.7
Q ss_pred ceeecCCCHHHHHHHHhc---CCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCC-EEEEeccc
Q psy6547 20 YNIIPYNDVDALEAKLKS---NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNV-LFIADEVQ 83 (266)
Q Consensus 20 v~~~~~~d~~~l~~~l~~---~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~-~li~De~~ 83 (266)
|..+..-+.+.+++.++. +-++.+|.+- ++ .+.+.++.+.+.+++++. ++++|-+.
T Consensus 44 v~~~~~~~~~~~~~q~~~~~~d~~~~aikiG-------~l-~~~~~~~~i~~~~~~~~~~~vVlDPv~ 103 (254)
T TIGR00097 44 VTGVYPIPPDFVEAQLDAVFSDIPVDAAKTG-------ML-ASAEIVEAVARKLREYPVRPLVVDPVM 103 (254)
T ss_pred eEEEEECCHHHHHHHHHHHHhCCCCCEEEEC-------Cc-CCHHHHHHHHHHHHhcCCCcEEECCcc
Confidence 444444455555544432 3355666643 33 677899999999999999 69999765
No 425
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=50.25 E-value=36 Score=29.88 Aligned_cols=61 Identities=10% Similarity=0.161 Sum_probs=40.2
Q ss_pred CCceeecCCCHHHHHHHHhcCCCEEEEEEccccCCC--------CcccCChHHHHHHHHHHHhcCCEEEE
Q psy6547 18 PGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEA--------GAVVPDDGYLKKVRALCSQYNVLFIA 79 (266)
Q Consensus 18 ~~v~~~~~~d~~~l~~~l~~~~~~~~i~~~~~~~~~--------g~~~~~~~~l~~l~~l~~~~g~~li~ 79 (266)
.++..+...+++.+.+.+++. +++.+++.+.+... |.+.--++.+.+|.++++++|+.+++
T Consensus 137 ~~l~l~~e~~le~I~~~i~~~-~~~lVVIDSIq~l~~~~~~~~~g~~~qvr~~~~~L~~lak~~~itvil 205 (372)
T cd01121 137 ENLYLLAETNLEDILASIEEL-KPDLVIIDSIQTVYSSELTSAPGSVSQVRECTAELMRFAKERNIPIFI 205 (372)
T ss_pred ccEEEEccCcHHHHHHHHHhc-CCcEEEEcchHHhhccccccCCCCHHHHHHHHHHHHHHHHHcCCeEEE
Confidence 345555566788888888543 67889999875431 11111134566788999999987764
No 426
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=50.23 E-value=14 Score=29.59 Aligned_cols=29 Identities=10% Similarity=0.095 Sum_probs=25.2
Q ss_pred CChHHHHHHHHHHHhcCCEEEEeccccCc
Q psy6547 58 PDDGYLKKVRALCSQYNVLFIADEVQTGL 86 (266)
Q Consensus 58 ~~~~~l~~l~~l~~~~g~~li~De~~~~~ 86 (266)
++.+.+++|.++|.+.|+.-|+=.+|+..
T Consensus 186 Idl~Nf~~I~~i~ldaGv~kviPHIYssi 214 (236)
T TIGR03581 186 IDLDNFEEIVQIALDAGVEKVIPHVYSSI 214 (236)
T ss_pred ccHHhHHHHHHHHHHcCCCeeccccceec
Confidence 67889999999999999999988888654
No 427
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=50.21 E-value=65 Score=25.20 Aligned_cols=64 Identities=9% Similarity=0.031 Sum_probs=48.7
Q ss_pred eeEEEEeeCcc--chHHHHHHHHHHCCceeccCCCCEEEEec--cCCCCHHHHHHHHHHHHHHHHHHh
Q psy6547 199 INTLILSVSAI--LEVYDVCIKMKDAGLVTKPISNNIIRLSP--ALNITEQELREGLDIIINTINTMA 262 (266)
Q Consensus 199 ~~~~~~~~~~~--~~~~~~~~~l~~~gi~~~~~~~~~iR~~~--~~~~t~~~i~~~~~~l~~~~~~~~ 262 (266)
++||.-.+.+| .-+..+.++|.++|..++.-.+..+|-.+ .+..+++|=.+-+.|+.++.+-+.
T Consensus 25 viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LDGDnvR~gL~~dLgFs~edR~eniRRvaevAkll~ 92 (197)
T COG0529 25 VIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLDGDNVRHGLNRDLGFSREDRIENIRRVAEVAKLLA 92 (197)
T ss_pred EEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEecChhHhhcccCCCCCChHHHHHHHHHHHHHHHHHH
Confidence 78887555322 23777889999999999988788888755 478899998888888888766543
No 428
>TIGR00160 MGSA methylglyoxal synthase. Methylglyoxal synthase (MGS) generates methylglyoxal (MG), a toxic metabolite (that may also be a regulatory metabolite and) that is detoxified, prinicipally, through a pathway involving glutathione and glyoxylase I. Totemeyer, et al. (MUID:98149311) propose that, during a loss of control over carbon flux, with accumulation of phosphorylated sugars and depletion of phosphate, as might happen during a rapid shift to a richer medium, MGS aids the cell by converting some dihydroxyacetone phosphate (DHAP) to MG and phosphate. This is therefore an alternative to triosephosphate isomerase and the remainder of the glycolytic pathway for the disposal of DHAP during the stress of a sudden increase in available sugars.
Probab=49.22 E-value=33 Score=25.51 Aligned_cols=53 Identities=13% Similarity=0.335 Sum_probs=35.2
Q ss_pred HHHHHHHHhcCC-CEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccC
Q psy6547 28 VDALEAKLKSNP-NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTG 85 (266)
Q Consensus 28 ~~~l~~~l~~~~-~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~ 85 (266)
-+++-+.+++.+ +.-.++..|....+. ..+++.|.++|.-|++++-...+-..
T Consensus 62 DqQIga~Ia~g~id~vIFf~DPl~~~ph-----epDi~aLlRlc~v~nIP~AtN~aTA~ 115 (143)
T TIGR00160 62 DQQIGALIAEGKIDAVIFFWDPLNAQPH-----EPDVKALLRLCTVWNIPLATNVATAD 115 (143)
T ss_pred HHHHHHHHHhCCCCEEEEecCCCCCCCC-----CcCHHHHHHHHHhhCcccccCHHHHH
Confidence 467777776554 333333555443322 33999999999999999988866644
No 429
>PRK10949 protease 4; Provisional
Probab=49.15 E-value=27 Score=32.91 Aligned_cols=48 Identities=10% Similarity=0.201 Sum_probs=31.8
Q ss_pred HHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEE
Q psy6547 29 DALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIA 79 (266)
Q Consensus 29 ~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~ 79 (266)
+.|+++. +++++++|++. +.+++|....+.+..++|.++ ++.|.++|+
T Consensus 354 ~~l~~a~-~D~~vkaVvLr-InSpGGs~~ase~i~~~i~~~-r~~gKPVva 401 (618)
T PRK10949 354 AQIRDAR-LDPKVKAIVLR-VNSPGGSVTASEVIRAELAAA-RAAGKPVVV 401 (618)
T ss_pred HHHHHHH-hCCCCcEEEEE-ecCCCCcHHHHHHHHHHHHHH-HhcCCcEEE
Confidence 3344333 35689998877 557788887666666666665 566777774
No 430
>KOG0352|consensus
Probab=48.18 E-value=27 Score=31.16 Aligned_cols=43 Identities=12% Similarity=0.104 Sum_probs=28.2
Q ss_pred ecCccceeeEEEEeeCccchHHHHHHHHHHCCceeccCCCCEEEEe
Q psy6547 192 SGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPISNNIIRLS 237 (266)
Q Consensus 192 ~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~iR~~ 237 (266)
|.|.+.|-+-|+.+= ..++.++..-.|-|=..+-+-..+-|+-
T Consensus 316 GMGVDKp~VRFViHW---~~~qn~AgYYQESGRAGRDGk~SyCRLY 358 (641)
T KOG0352|consen 316 GMGVDKPDVRFVIHW---SPSQNLAGYYQESGRAGRDGKRSYCRLY 358 (641)
T ss_pred ccccCCcceeEEEec---CchhhhHHHHHhccccccCCCccceeee
Confidence 345555566666543 1366677777788877777767788887
No 431
>cd04920 ACT_AKiii-DAPDC_2 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC). This CD includes the second of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=48.13 E-value=39 Score=20.90 Aligned_cols=45 Identities=7% Similarity=-0.045 Sum_probs=34.0
Q ss_pred HHHHHHHHHHCCceeccCCCCEEEEeccCCCCHHHHHHHHHHHHHHH
Q psy6547 212 VYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTI 258 (266)
Q Consensus 212 ~~~~~~~l~~~gi~~~~~~~~~iR~~~~~~~t~~~i~~~~~~l~~~~ 258 (266)
..++.+.|.+.++.+...+..-++++ +..++++.++++.+|-+.+
T Consensus 17 ~~~~~~~L~~~~i~~i~~~~s~~~is--~vv~~~d~~~av~~LH~~f 61 (63)
T cd04920 17 LGPALEVFGKKPVHLVSQAANDLNLT--FVVDEDQADGLCARLHFQL 61 (63)
T ss_pred HHHHHHHHhcCCceEEEEeCCCCeEE--EEEeHHHHHHHHHHHHHHH
Confidence 56788888888888876656666666 5578899999998886653
No 432
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=47.62 E-value=25 Score=28.70 Aligned_cols=51 Identities=14% Similarity=0.083 Sum_probs=35.1
Q ss_pred CHHHHHHHHhcC-CCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEec
Q psy6547 27 DVDALEAKLKSN-PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADE 81 (266)
Q Consensus 27 d~~~l~~~l~~~-~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De 81 (266)
.+..++..++.. +-+..+-+-. +...+++.+.+++..++||+||+.+..-.
T Consensus 10 ~~~~~~d~Le~~g~yID~lKfg~----Gt~~l~~~~~l~eki~la~~~~V~v~~GG 61 (237)
T TIGR03849 10 PPKFVEDYLKVCGDYITFVKFGW----GTSALIDRDIVKEKIEMYKDYGIKVYPGG 61 (237)
T ss_pred CHHHHHHHHHHhhhheeeEEecC----ceEeeccHHHHHHHHHHHHHcCCeEeCCc
Confidence 578888888432 1233333332 33455888999999999999999977554
No 433
>COG2870 RfaE ADP-heptose synthase, bifunctional sugar kinase/adenylyltransferase [Cell envelope biogenesis, outer membrane]
Probab=47.42 E-value=38 Score=29.95 Aligned_cols=35 Identities=14% Similarity=0.293 Sum_probs=26.6
Q ss_pred CEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEe
Q psy6547 40 NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIAD 80 (266)
Q Consensus 40 ~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~D 80 (266)
+..++++..+ + -|.+. +.+.+.++|+++|+++.+|
T Consensus 143 ~~~~vVLSDY-~-KG~L~----~~q~~I~~ar~~~~pVLvD 177 (467)
T COG2870 143 SFDALVLSDY-A-KGVLT----NVQKMIDLAREAGIPVLVD 177 (467)
T ss_pred cCCEEEEecc-c-cccch----hHHHHHHHHHHcCCcEEEC
Confidence 5566666543 3 34444 6999999999999999999
No 434
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=46.85 E-value=75 Score=25.51 Aligned_cols=54 Identities=15% Similarity=0.242 Sum_probs=34.3
Q ss_pred CCHHHHHHHHhc---CCCEEEEEEccccCCCCcc-cCCh-----HHHHHHHHHHHhcCCEEEE
Q psy6547 26 NDVDALEAKLKS---NPNICAFMVEPIQGEAGAV-VPDD-----GYLKKVRALCSQYNVLFIA 79 (266)
Q Consensus 26 ~d~~~l~~~l~~---~~~~~~i~~~~~~~~~g~~-~~~~-----~~l~~l~~l~~~~g~~li~ 79 (266)
.++++|+..+++ ..+++.|++.+.+...... ..+. +.++.|.++|+++|+++++
T Consensus 106 ~~~~~l~~~i~~~~~~~~~~~vvID~l~~l~~~~~~~~~~~~~~~~~~~L~~la~~~~~~ii~ 168 (242)
T cd00984 106 LTVSDIRSRARRLKKEHGLGLIVIDYLQLMSGSKKKGNRQQEVAEISRSLKLLAKELNVPVIA 168 (242)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCchhcCCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEE
Confidence 367777766643 2267889998865432111 0111 3578888999999988885
No 435
>PRK09461 ansA cytoplasmic asparaginase I; Provisional
Probab=46.65 E-value=84 Score=27.16 Aligned_cols=49 Identities=8% Similarity=0.260 Sum_probs=32.1
Q ss_pred CCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEE
Q psy6547 26 NDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIA 79 (266)
Q Consensus 26 ~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~ 79 (266)
.|.+.|+.++++ ..++++++... .|.+..++++++.|.++. +.|+++|+
T Consensus 221 ~~~~~l~~~~~~--~~~GiVl~~~G--~Gn~p~~~~~~~~l~~~~-~~Gi~VV~ 269 (335)
T PRK09461 221 ISAEVVRNFLRQ--PVKALILRSYG--VGNAPQNPALLQELKEAS-ERGIVVVN 269 (335)
T ss_pred CCHHHHHHHHhC--CCCEEEEccCC--CCCCCCCHHHHHHHHHHH-HCCCEEEE
Confidence 378888888843 57899988743 233333466777777655 56877653
No 436
>COG2257 Uncharacterized homolog of the cytoplasmic domain of flagellar protein FhlB [Function unknown]
Probab=46.47 E-value=13 Score=25.14 Aligned_cols=24 Identities=13% Similarity=0.077 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHhcCCEEEEecccc
Q psy6547 61 GYLKKVRALCSQYNVLFIADEVQT 84 (266)
Q Consensus 61 ~~l~~l~~l~~~~g~~li~De~~~ 84 (266)
+.-++|.+.|++||+++..|....
T Consensus 32 ~iAe~II~~Ake~~Vpi~edp~Lv 55 (92)
T COG2257 32 EIAEKIIEKAKEHGVPIQEDPLLV 55 (92)
T ss_pred HHHHHHHHHHHHcCCCcccCHHHH
Confidence 467899999999999999997764
No 437
>PRK13109 flhB flagellar biosynthesis protein FlhB; Reviewed
Probab=46.34 E-value=23 Score=30.83 Aligned_cols=44 Identities=16% Similarity=0.193 Sum_probs=30.4
Q ss_pred CCEEEEEEccccCCCCcccC--------------ChHHHHHHHHHHHhcCCEEEEeccc
Q psy6547 39 PNICAFMVEPIQGEAGAVVP--------------DDGYLKKVRALCSQYNVLFIADEVQ 83 (266)
Q Consensus 39 ~~~~~i~~~~~~~~~g~~~~--------------~~~~l~~l~~l~~~~g~~li~De~~ 83 (266)
++-.+|++||.|-.-+-. | ..+.=.+|+++|++||++++.|-..
T Consensus 263 ~~AdVVItNPTH~AVAL~-Yd~~~~~aP~VvAKG~d~~A~~Ir~~A~e~~VPiven~pL 320 (358)
T PRK13109 263 PRATLVIANPTHFAIALR-YERSENPAPLVVAKGQDLIALKIREIAEENGIPVIEDKPL 320 (358)
T ss_pred CCCcEEEECCCceEEEeE-eCCCCCCCCEEEEEeCcHHHHHHHHHHHHcCCCEEeCHHH
Confidence 466788888875322211 1 1235678999999999999999554
No 438
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=46.29 E-value=28 Score=32.22 Aligned_cols=63 Identities=22% Similarity=0.195 Sum_probs=42.4
Q ss_pred CHHHHHHHHhc--CCCEEEEEEccccCCCCc---------------ccCChHHHHHHHHHHHhcCCEEEEeccccCcCCc
Q psy6547 27 DVDALEAKLKS--NPNICAFMVEPIQGEAGA---------------VVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRT 89 (266)
Q Consensus 27 d~~~l~~~l~~--~~~~~~i~~~~~~~~~g~---------------~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~ 89 (266)
+...+.+.|.- .-.+.+|.+.|++...+. ..-+.+.++++++.||++|+-||+|-++.+++..
T Consensus 109 ~~~gi~~~l~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~~~~~~~~~G~~~e~k~lV~~aH~~Gi~VilD~V~NH~~~~ 188 (542)
T TIGR02402 109 TFDAAIEKLPYLADLGITAIELMPVAQFPGTRGWGYDGVLPYAPHNAYGGPDDLKALVDAAHGLGLGVILDVVYNHFGPE 188 (542)
T ss_pred CHHHHHHhhHHHHHcCCCEEEeCccccCCCCCCCCCCccCccccccccCCHHHHHHHHHHHHHCCCEEEEEEccCCCCCc
Confidence 34444444421 226888988887432211 1124568999999999999999999999766543
No 439
>PRK12757 cell division protein FtsN; Provisional
Probab=46.10 E-value=1.3e+02 Score=24.88 Aligned_cols=58 Identities=9% Similarity=-0.049 Sum_probs=42.5
Q ss_pred eeEEEEeeCc-cchHHHHHHHHHHCCceecc-CCCCEEEEeccCCCCHHHHHHHHHHHHH
Q psy6547 199 INTLILSVSA-ILEVYDVCIKMKDAGLVTKP-ISNNIIRLSPALNITEQELREGLDIIIN 256 (266)
Q Consensus 199 ~~~~~~~~~~-~~~~~~~~~~l~~~gi~~~~-~~~~~iR~~~~~~~t~~~i~~~~~~l~~ 256 (266)
-+.+.+..-. ..+++.+..+|...|+-... .++++.|+.++-..+.++.+++.++|+.
T Consensus 184 ~~~VQVGAF~~~~nAe~L~arL~~~G~~a~I~~~gg~yRVrVGPf~sr~~A~~~~~rLk~ 243 (256)
T PRK12757 184 RWMVQCGSFKGTEQAESVRAQLAFAGIESRITTGGGWNRVVLGPYNSKAAADKMLQRLKG 243 (256)
T ss_pred cEEEEEeeCCCHHHHHHHHHHHHhcCCceEEeecCCEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 3566666422 34688899999988865432 2346888887788899999999999985
No 440
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=46.00 E-value=70 Score=24.41 Aligned_cols=53 Identities=17% Similarity=0.314 Sum_probs=37.7
Q ss_pred cccCCCCCC-ceeecCCCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHH----HHHHHHHHh
Q psy6547 11 NEFGPHMPG-YNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYL----KKVRALCSQ 72 (266)
Q Consensus 11 ~~~~~~~~~-v~~~~~~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l----~~l~~l~~~ 72 (266)
+.|.-++++ .++++++.+..+.+.+ .....+|++.|+. ++.+-+ +.+..+.++
T Consensus 58 ~RF~~~~~~~F~fyD~~~p~~~~~~l--~~~~d~vv~DPPF-------l~~ec~~k~a~ti~~L~k~ 115 (162)
T PF10237_consen 58 RRFEQFGGDEFVFYDYNEPEELPEEL--KGKFDVVVIDPPF-------LSEECLTKTAETIRLLLKP 115 (162)
T ss_pred chHHhcCCcceEECCCCChhhhhhhc--CCCceEEEECCCC-------CCHHHHHHHHHHHHHHhCc
Confidence 445556766 8999999999999888 3467899999988 445555 444444444
No 441
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=45.62 E-value=18 Score=30.04 Aligned_cols=28 Identities=14% Similarity=0.076 Sum_probs=24.5
Q ss_pred ChHHHHHHHHHHHhcCCEEEEeccccCc
Q psy6547 59 DDGYLKKVRALCSQYNVLFIADEVQTGL 86 (266)
Q Consensus 59 ~~~~l~~l~~l~~~~g~~li~De~~~~~ 86 (266)
+.+.++++++.||++|+-||+|=+....
T Consensus 50 t~~d~~~Lv~~~h~~gi~VilD~V~NH~ 77 (316)
T PF00128_consen 50 TMEDFKELVDAAHKRGIKVILDVVPNHT 77 (316)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEEETSEE
T ss_pred hhhhhhhhhhccccccceEEEeeecccc
Confidence 4568999999999999999999998544
No 442
>PRK10933 trehalose-6-phosphate hydrolase; Provisional
Probab=45.31 E-value=80 Score=29.39 Aligned_cols=60 Identities=13% Similarity=0.109 Sum_probs=41.9
Q ss_pred CHHHHHHHHhc--CCCEEEEEEccccCCCC---cc-----------cCChHHHHHHHHHHHhcCCEEEEeccccCc
Q psy6547 27 DVDALEAKLKS--NPNICAFMVEPIQGEAG---AV-----------VPDDGYLKKVRALCSQYNVLFIADEVQTGL 86 (266)
Q Consensus 27 d~~~l~~~l~~--~~~~~~i~~~~~~~~~g---~~-----------~~~~~~l~~l~~l~~~~g~~li~De~~~~~ 86 (266)
|+..+.+.|+. .-.+.+|.+.|++..++ .+ .-+.+.++++++.||++|+-||+|-+..+.
T Consensus 31 dl~gi~~~ldyl~~lGv~~i~l~P~~~~~~~~~gY~~~d~~~id~~~Gt~~d~~~lv~~~h~~gi~vilD~V~NH~ 106 (551)
T PRK10933 31 DLRGVTQRLDYLQKLGVDAIWLTPFYVSPQVDNGYDVANYTAIDPTYGTLDDFDELVAQAKSRGIRIILDMVFNHT 106 (551)
T ss_pred CHHHHHHhhHHHHhCCCCEEEECCCCCCCCCCCCCCcccCCCcCcccCCHHHHHHHHHHHHHCCCEEEEEECCCCc
Confidence 56655555532 22689999999753221 11 124568999999999999999999998654
No 443
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=44.96 E-value=17 Score=30.70 Aligned_cols=25 Identities=16% Similarity=0.440 Sum_probs=21.2
Q ss_pred hHHHHHHHHHH-HhcCCEEEEecccc
Q psy6547 60 DGYLKKVRALC-SQYNVLFIADEVQT 84 (266)
Q Consensus 60 ~~~l~~l~~l~-~~~g~~li~De~~~ 84 (266)
...+++|.+.| ++++.+||+||+|.
T Consensus 158 ~sRl~ql~~W~g~dfdgvivfDEcH~ 183 (303)
T PF13872_consen 158 RSRLDQLVDWCGEDFDGVIVFDECHK 183 (303)
T ss_pred cchHHHHHHHHhcCCCceEEeccchh
Confidence 35889999998 56789999999993
No 444
>PF07071 DUF1341: Protein of unknown function (DUF1341); InterPro: IPR010763 Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.; PDB: 3NZR_D 3LM7_A 3M0Z_B 3M6Y_A 3N73_A 3MUX_A.
Probab=44.62 E-value=12 Score=29.61 Aligned_cols=60 Identities=18% Similarity=0.330 Sum_probs=28.0
Q ss_pred CceeecCC---CHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccC
Q psy6547 19 GYNIIPYN---DVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTG 85 (266)
Q Consensus 19 ~v~~~~~~---d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~ 85 (266)
.+.+||.. .+++++...++-- -..|.+||.-+ ++.+.+++|.++|.+.|+..|+=.+|+.
T Consensus 151 SiKffPm~Gl~~leE~~avAkA~a-~~g~~lEPTGG------Idl~N~~~I~~i~l~aGv~~viPHiYss 213 (218)
T PF07071_consen 151 SIKFFPMGGLKHLEELKAVAKACA-RNGFTLEPTGG------IDLDNFEEIVKICLDAGVEKVIPHIYSS 213 (218)
T ss_dssp EEEE---TTTTTHHHHHHHHHHHH-HCT-EEEEBSS--------TTTHHHHHHHHHHTT-S-B--EE-GG
T ss_pred eeeEeecCCcccHHHHHHHHHHHH-HcCceeCCcCC------cCHHHHHHHHHHHHHcCCCeeccchhhh
Confidence 34455543 3455444443210 12233476543 5667888888888888888887777753
No 445
>COG3964 Predicted amidohydrolase [General function prediction only]
Probab=43.49 E-value=49 Score=28.14 Aligned_cols=68 Identities=18% Similarity=0.349 Sum_probs=41.6
Q ss_pred HHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCcCCcCcccccc------cCCCC
Q psy6547 28 VDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIH------YEDVR 101 (266)
Q Consensus 28 ~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~~~g~~~~~~------~~~~~ 101 (266)
.+++-+.|.+. + |+.--.++-++..+.+...+....+.|++.|+ ++|-.|. +..|++. ..|+-
T Consensus 199 ~dEvlerL~~G-D---IitHcfngkpn~~l~~dg~vr~~vrra~erGV--~fD~ghG-----~asfsf~vAr~aia~Gll 267 (386)
T COG3964 199 MDEVLERLRRG-D---IITHCFNGKPNTILTDDGVVRAEVRRARERGV--IFDAGHG-----RASFSFNVARRAIANGLL 267 (386)
T ss_pred HHHHHHhccCC-c---eeeeeccCCCCCccccchhHHHHHHHHHhcce--EEEccCC-----cceeeHHHHHHHHhcCCC
Confidence 36666666322 2 22222344456677888899999999999997 6776662 1233332 24666
Q ss_pred cCeee
Q psy6547 102 PDIVI 106 (266)
Q Consensus 102 ~d~~~ 106 (266)
||+++
T Consensus 268 P~~IS 272 (386)
T COG3964 268 PDIIS 272 (386)
T ss_pred cceee
Confidence 77665
No 446
>PF05036 SPOR: Sporulation related domain; InterPro: IPR007730 This 70 residue domain is composed of two 35 residue repeats that are found in bacterial proteins involved in sporulation and cell division, such as FtsN, CwlM and RlpA. This repeat might be involved in binding peptidoglycan. FtsN is an essential cell division protein with a simple bitopic topology: a short N-terminal cytoplasmic segment fused to a large carboxy periplasmic domain through a single transmembrane domain. The repeats lie at the periplasmic C terminus, which has an RNP-like fold []. FtsN localises to the septum ring complex. The CwlM protein is a cell wall hydrolase, where the C-terminal region, including the repeats, determines substrate specificity []. RlpA is a rare lipoprotein A protein that may be important for cell division. Its N-terminal cysteine may be attached to thioglyceride and N-fatty acyl residues [].; PDB: 1X60_A 1UTA_A.
Probab=43.02 E-value=55 Score=20.56 Aligned_cols=56 Identities=11% Similarity=0.005 Sum_probs=36.5
Q ss_pred eEEEEeeCc-cchHHHHHHHHHHCCcee----ccCCCCEEEEeccCCCCHHHHHHHHHHHH
Q psy6547 200 NTLILSVSA-ILEVYDVCIKMKDAGLVT----KPISNNIIRLSPALNITEQELREGLDIII 255 (266)
Q Consensus 200 ~~~~~~~~~-~~~~~~~~~~l~~~gi~~----~~~~~~~iR~~~~~~~t~~~i~~~~~~l~ 255 (266)
+.+++..-. ..+++.+..+|...|.-. ...+..+.|+......++++.+.+++.|+
T Consensus 5 y~vQv~s~~~~~~A~~~~~~l~~~g~~~~~~~~~~~~~~yrV~~G~f~~~~~A~~~~~~l~ 65 (76)
T PF05036_consen 5 YYVQVGSFSSEENAERLLAKLKKKGPDAYVVQVSKGGPWYRVRVGPFSSREEAEAALRKLK 65 (76)
T ss_dssp EEEEEEEES-HHHHHHHHHHHHHHT-----EEEEEETTCEEEEECCECTCCHHHHHHHHHH
T ss_pred EEEEEEEcCCHHHHHHHHHHHHhcCCCcceEEEecCCceEEEEECCCCCHHHHHHHHHHHh
Confidence 444544311 346788999998887743 23356777777667678888888888887
No 447
>cd01840 SGNH_hydrolase_yrhL_like yrhL-like subfamily of SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases. Most members of this sub-family appear to co-occur with N-terminal acyltransferase domains. Might be involved in lipid metabolism.
Probab=42.83 E-value=74 Score=23.49 Aligned_cols=49 Identities=16% Similarity=0.159 Sum_probs=29.7
Q ss_pred HHHHHHHHhcCC-CEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEe
Q psy6547 28 VDALEAKLKSNP-NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIAD 80 (266)
Q Consensus 28 ~~~l~~~l~~~~-~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~D 80 (266)
.+.|+++++.-+ +.+.+++++.. . ..+..+.-+.+.++|+++.-+.++|
T Consensus 66 ~~nl~~ii~~~~~~~~ivlv~~~~--~--~~~~~~~n~~~~~~a~~~~~v~~id 115 (150)
T cd01840 66 KDQLDELLDALGPDRQVYLVNPHV--P--RPWEPDVNAYLLDAAKKYKNVTIID 115 (150)
T ss_pred HHHHHHHHHHcCCCCEEEEEECCC--C--cchHHHHHHHHHHHHHHCCCcEEec
Confidence 466666665433 46777777652 1 2245667778888999993344444
No 448
>KOG0237|consensus
Probab=41.93 E-value=77 Score=29.59 Aligned_cols=53 Identities=21% Similarity=0.320 Sum_probs=39.6
Q ss_pred HHHHHHHHhcCCCEEEEEEccccCCC-C-------cccCChHHHHHHHHHHHhcCCEEEEe
Q psy6547 28 VDALEAKLKSNPNICAFMVEPIQGEA-G-------AVVPDDGYLKKVRALCSQYNVLFIAD 80 (266)
Q Consensus 28 ~~~l~~~l~~~~~~~~i~~~~~~~~~-g-------~~~~~~~~l~~l~~l~~~~g~~li~D 80 (266)
..+|.-.+++.|.++-|++-|.+.-+ . .+.++..+.++++++|++|++-+|+=
T Consensus 14 EHal~wkL~qSp~v~~v~vaPGn~G~a~~~~~~~~~~dI~~~d~~ala~f~~e~~I~lVvv 74 (788)
T KOG0237|consen 14 EHALAWKLKQSPKVKKVYVAPGNGGTASGDASKVPNLDISVADFEALASFCKEHNINLVVV 74 (788)
T ss_pred HhHHHHHhhcCCccceEEEccCCCCcccCccccCcccccChhhHHHHHHHHHHcceeEEEE
Confidence 45667778788889999998854322 1 23456679999999999999888764
No 449
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=41.87 E-value=1e+02 Score=25.23 Aligned_cols=54 Identities=17% Similarity=0.261 Sum_probs=34.2
Q ss_pred CHHHHHHHHhc----CCCEEEEEEccccCCCCc--ccCCh----HHHHHHHHHHHhcCCEEEEe
Q psy6547 27 DVDALEAKLKS----NPNICAFMVEPIQGEAGA--VVPDD----GYLKKVRALCSQYNVLFIAD 80 (266)
Q Consensus 27 d~~~l~~~l~~----~~~~~~i~~~~~~~~~g~--~~~~~----~~l~~l~~l~~~~g~~li~D 80 (266)
++++++..++. ..++.+|++...+-.... ..-.. +..++|.++|+++|+++|+=
T Consensus 113 ~~~~i~~~i~~~~~~~~~~~~v~IDyl~ll~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~vi~~ 176 (259)
T PF03796_consen 113 TIDDIESKIRRLKREGKKVDVVFIDYLQLLKSEDSSDNRRQEIGEISRELKALAKELNIPVIAL 176 (259)
T ss_dssp BHHHHHHHHHHHHHHSTTEEEEEEEEGGGSBTSCSSSCCHHHHHHHHHHHHHHHHHHTSEEEEE
T ss_pred CHHHHHHHHHHHHhhccCCCEEEechHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHcCCeEEEc
Confidence 67777777643 247888888876433221 10111 23567889999999998863
No 450
>PF07905 PucR: Purine catabolism regulatory protein-like family; InterPro: IPR012914 This domain is found in the purine catabolism regulatory protein expressed by Bacillus subtilis (PucR, O32138 from SWISSPROT). PucR is thought to be a transcriptional regulator of genes involved in the purine degradation pathway, and may contain a LysR-like DNA-binding domain. It is similar to LysR-type regulators in that it represses its own expression []. The other members of this family are also putative regulatory proteins.
Probab=41.81 E-value=56 Score=23.46 Aligned_cols=46 Identities=9% Similarity=0.132 Sum_probs=29.5
Q ss_pred CHHHHHHHHhc--CCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEE
Q psy6547 27 DVDALEAKLKS--NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIA 79 (266)
Q Consensus 27 d~~~l~~~l~~--~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~ 79 (266)
+.+.+.+.+++ ...++++.+....... +.-+++.+.|++++++|+.
T Consensus 57 ~~~~~~~~i~~L~~~~~agL~i~~~~~~~-------~iP~~~i~~A~~~~lPli~ 104 (123)
T PF07905_consen 57 DEEELREFIRELAEKGAAGLGIKTGRYLD-------EIPEEIIELADELGLPLIE 104 (123)
T ss_pred CHHHHHHHHHHHHHCCCeEEEEeccCccc-------cCCHHHHHHHHHcCCCEEE
Confidence 45567777654 2357777765432211 2337888999999999883
No 451
>PRK12468 flhB flagellar biosynthesis protein FlhB; Reviewed
Probab=41.61 E-value=30 Score=30.50 Aligned_cols=44 Identities=9% Similarity=0.155 Sum_probs=30.4
Q ss_pred CCEEEEEEccccCCCCcccCC--------------hHHHHHHHHHHHhcCCEEEEeccc
Q psy6547 39 PNICAFMVEPIQGEAGAVVPD--------------DGYLKKVRALCSQYNVLFIADEVQ 83 (266)
Q Consensus 39 ~~~~~i~~~~~~~~~g~~~~~--------------~~~l~~l~~l~~~~g~~li~De~~ 83 (266)
++-.+|++||.|-.-+-. |+ .+.=.+|+++|++||++++.|-..
T Consensus 261 ~~AdVVItNPTH~AVALk-Y~~~~~~AP~VvAKG~d~~A~~Ir~~A~e~~VPiven~pL 318 (386)
T PRK12468 261 PKADVIVTNPTHYAVALQ-YNESKMSAPKVLAKGAGAVALRIRELGAEHRIPLLEAPPL 318 (386)
T ss_pred CCCcEEEECCCceEEEEE-eCCCCCCCCEEEEeeCcHHHHHHHHHHHHcCCcEEeCHHH
Confidence 466788888875332211 21 235678999999999999999544
No 452
>TIGR00328 flhB flagellar biosynthetic protein FlhB. FlhB and its functionally equivalent orthologs, from among a larger superfamily of proteins involved in type III protein export systems, are specifically involved in flagellar protein export. The seed members are restricted and the trusted cutoff is set high such that the proteins gathered by this model play roles specifically related to flagellar structures. Full-length homologs scoring below the trusted cutoff are involved in peptide export but not necessarily in the creation of flagella.
Probab=41.48 E-value=29 Score=30.16 Aligned_cols=44 Identities=16% Similarity=0.243 Sum_probs=30.0
Q ss_pred CCEEEEEEccccCCCCcccCC--------------hHHHHHHHHHHHhcCCEEEEeccc
Q psy6547 39 PNICAFMVEPIQGEAGAVVPD--------------DGYLKKVRALCSQYNVLFIADEVQ 83 (266)
Q Consensus 39 ~~~~~i~~~~~~~~~g~~~~~--------------~~~l~~l~~l~~~~g~~li~De~~ 83 (266)
++-.+|++||.|-.-+.. |+ ...=.+|+++|+++|++++.|...
T Consensus 254 ~~AdVVItNPTH~AVal~-Y~~~~~~aP~vvakG~~~~A~~I~~~A~~~~vPi~~~~~L 311 (347)
T TIGR00328 254 PKADVVITNPTHYAVALK-YDPGKMPAPVVVAKGVDELALKIKEIARENNVPIVENPPL 311 (347)
T ss_pred CCCcEEEECCCceEEEeE-eCCCCCCCCEEEEeeCcHHHHHHHHHHHHcCCCEEeCHHH
Confidence 355777888865332211 21 235568999999999999999655
No 453
>PF02844 GARS_N: Phosphoribosylglycinamide synthetase, N domain; InterPro: IPR020562 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the N-domain, which is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005481 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 3MJF_A 2XD4_A 2XCL_A 2IP4_A 2YW2_B 2YYA_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A ....
Probab=41.39 E-value=1e+02 Score=21.46 Aligned_cols=51 Identities=16% Similarity=0.171 Sum_probs=31.7
Q ss_pred HHHHHHHHhcCCCEEEEEEccccCCC----CcccCChHHHHHHHHHHHhcCCEEE
Q psy6547 28 VDALEAKLKSNPNICAFMVEPIQGEA----GAVVPDDGYLKKVRALCSQYNVLFI 78 (266)
Q Consensus 28 ~~~l~~~l~~~~~~~~i~~~~~~~~~----g~~~~~~~~l~~l~~l~~~~g~~li 78 (266)
-.+|...|.+.+.+.-+++-|-+.-+ ..+..+....+++.+.|+++++=++
T Consensus 12 EHAia~~l~~s~~v~~v~~aPGN~G~~~~~~~~~~~~~d~~~l~~~a~~~~idlv 66 (100)
T PF02844_consen 12 EHAIAWKLSQSPSVEEVYVAPGNPGTAELGKNVPIDITDPEELADFAKENKIDLV 66 (100)
T ss_dssp HHHHHHHHTTCTTEEEEEEEE--TTGGGTSEEE-S-TT-HHHHHHHHHHTTESEE
T ss_pred HHHHHHHHhcCCCCCEEEEeCCCHHHHhhceecCCCCCCHHHHHHHHHHcCCCEE
Confidence 45677788777777777777652211 1122367789999999999986444
No 454
>cd04937 ACT_AKi-DapG-BS_2 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI. This CD includes the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive AK isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The BS AKI is tetrameric consisting of two alpha and two beta subunits; th
Probab=40.96 E-value=67 Score=19.76 Aligned_cols=45 Identities=9% Similarity=0.253 Sum_probs=32.7
Q ss_pred HHHHHHHHHHCCceeccCCCCEEEEeccCCCCHHHHHHHHHHHHHHH
Q psy6547 212 VYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTI 258 (266)
Q Consensus 212 ~~~~~~~l~~~gi~~~~~~~~~iR~~~~~~~t~~~i~~~~~~l~~~~ 258 (266)
..++...|.+.||-+......-..++ +..++++.++++++|-+.+
T Consensus 18 ~~~if~aL~~~~I~v~~~~~Se~~is--~~v~~~~~~~av~~Lh~~f 62 (64)
T cd04937 18 MAKIVGALSKEGIEILQTADSHTTIS--CLVSEDDVKEAVNALHEAF 62 (64)
T ss_pred HHHHHHHHHHCCCCEEEEEcCccEEE--EEEcHHHHHHHHHHHHHHh
Confidence 56788889999998864433444444 4578889999998887654
No 455
>cd01169 HMPP_kinase 4-amino-5-hydroxymethyl-2-methyl-pyrimidine phosphate kinase (HMPP-kinase) catalyzes two consecutive phosphorylation steps in the thiamine phosphate biosynthesis pathway, leading to the synthesis of vitamin B1. The first step is the phosphorylation of the hydroxyl group of HMP to form 4-amino-5-hydroxymethyl-2-methyl-pyrimidine phosphate (HMP-P) and then the phophorylation of HMP-P to form 4-amino-5-hydroxymethyl-2-methyl-pyrimidine pyrophosphate (HMP-PP), which is the substrate for the thiamine synthase coupling reaction.
Probab=40.93 E-value=97 Score=24.85 Aligned_cols=49 Identities=16% Similarity=0.286 Sum_probs=33.7
Q ss_pred CHHHHHHHHhc---CCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhc-CCEEEEeccc
Q psy6547 27 DVDALEAKLKS---NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQY-NVLFIADEVQ 83 (266)
Q Consensus 27 d~~~l~~~l~~---~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~-g~~li~De~~ 83 (266)
+++.+++.++. +.+..+|.+ |.+ .+.+.++.+.++++++ ++++++|-+.
T Consensus 52 ~~~~~~~~l~~~~~~~~~~~i~~-------G~l-~~~~~~~~i~~~~~~~~~~~vv~Dpv~ 104 (242)
T cd01169 52 PPEFVAAQLDAVLEDIPVDAIKI-------GML-GSAEIIEAVAEALKDYPDIPVVLDPVM 104 (242)
T ss_pred CHHHHHHHHHHHHhCCCCCEEEE-------CCC-CCHHHHHHHHHHHHhCCCCcEEECCce
Confidence 54555554432 225566666 333 5788999999999998 8999999665
No 456
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=40.52 E-value=36 Score=30.96 Aligned_cols=29 Identities=14% Similarity=0.000 Sum_probs=25.6
Q ss_pred ChHHHHHHHHHHHhcCCEEEEeccccCcC
Q psy6547 59 DDGYLKKVRALCSQYNVLFIADEVQTGLG 87 (266)
Q Consensus 59 ~~~~l~~l~~l~~~~g~~li~De~~~~~~ 87 (266)
+.+.++++++.||++|+-||+|-+..+.+
T Consensus 79 t~~dl~~Li~~~H~~Gi~vi~D~V~NH~~ 107 (479)
T PRK09441 79 TKEELLNAIDALHENGIKVYADVVLNHKA 107 (479)
T ss_pred CHHHHHHHHHHHHHCCCEEEEEECccccc
Confidence 56789999999999999999999996554
No 457
>PF13167 GTP-bdg_N: GTP-binding GTPase N-terminal
Probab=40.03 E-value=1.2e+02 Score=20.80 Aligned_cols=57 Identities=12% Similarity=0.231 Sum_probs=35.7
Q ss_pred CHHHHHHHHhcCC-CEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCC-EEEEeccc
Q psy6547 27 DVDALEAKLKSNP-NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNV-LFIADEVQ 83 (266)
Q Consensus 27 d~~~l~~~l~~~~-~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~-~li~De~~ 83 (266)
++++++.+++.-. .+..-++-....+...+.+....+++|.++++++++ .+|+|+-.
T Consensus 9 ~l~El~~L~~t~g~~vv~~~~q~~~~~~p~~~iG~GK~eei~~~~~~~~~d~vvfd~~L 67 (95)
T PF13167_consen 9 SLEELEELAETAGYEVVGTVVQKRRKPDPKTYIGSGKVEEIKELIEELDADLVVFDNEL 67 (95)
T ss_pred HHHHHHHHHHHCCCeEEEEEEecCCCCCcceeechhHHHHHHHHHhhcCCCEEEECCCC
Confidence 4777888876533 444434333333333445788899999999998885 44566544
No 458
>cd01171 YXKO-related B.subtilis YXKO protein of unknown function and related proteins. Based on the conservation of the ATP binding site, the substrate binding site and the Mg2+binding site and structural homology this group is a member of the ribokinase-like superfamily.
Probab=39.77 E-value=71 Score=26.04 Aligned_cols=60 Identities=13% Similarity=0.118 Sum_probs=37.9
Q ss_pred ccCCCCCCceeecCCC--HHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEec
Q psy6547 12 EFGPHMPGYNIIPYND--VDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADE 81 (266)
Q Consensus 12 ~~~~~~~~v~~~~~~d--~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De 81 (266)
...++.++++..+.++ .+++...+ .+..++++.+.. .+.+..+++.+.++++++++|+|-
T Consensus 50 ~~~~~~pe~i~~~~~~~~~~~~~~~~---~~~d~v~ig~gl-------~~~~~~~~i~~~~~~~~~pvVlDa 111 (254)
T cd01171 50 VIKSYSPELMVHPLLETDIEELLELL---ERADAVVIGPGL-------GRDEEAAEILEKALAKDKPLVLDA 111 (254)
T ss_pred HHHhcCceeeEecccccchHHHHhhh---ccCCEEEEecCC-------CCCHHHHHHHHHHHhcCCCEEEEc
Confidence 3455667777766543 23333333 245666665422 223688899999999999999993
No 459
>COG0816 Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) [DNA replication, recombination, and repair]
Probab=39.73 E-value=1e+02 Score=22.99 Aligned_cols=57 Identities=19% Similarity=0.198 Sum_probs=33.2
Q ss_pred CHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHH-HhcCCEEE-Eecccc
Q psy6547 27 DVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALC-SQYNVLFI-ADEVQT 84 (266)
Q Consensus 27 d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~-~~~g~~li-~De~~~ 84 (266)
+.+.|..+++++ ++..|++--+.++.|..-...+..+++.+.. ++.+++++ .||=.+
T Consensus 41 ~~~~l~~li~~~-~~~~vVVGlP~~m~g~~~~~~~~~~~f~~~L~~r~~lpv~l~DERlt 99 (141)
T COG0816 41 DFNALLKLVKEY-QVDTVVVGLPLNMDGTEGPRAELARKFAERLKKRFNLPVVLWDERLS 99 (141)
T ss_pred hHHHHHHHHHHh-CCCEEEEecCcCCCCCcchhHHHHHHHHHHHHHhcCCCEEEEcCccC
Confidence 678899999776 4555555555555554433333344444433 45666665 776553
No 460
>PRK12313 glycogen branching enzyme; Provisional
Probab=39.65 E-value=41 Score=31.87 Aligned_cols=48 Identities=13% Similarity=0.020 Sum_probs=36.3
Q ss_pred CEEEEEEccccCCC--Cc-------------ccCChHHHHHHHHHHHhcCCEEEEeccccCcC
Q psy6547 40 NICAFMVEPIQGEA--GA-------------VVPDDGYLKKVRALCSQYNVLFIADEVQTGLG 87 (266)
Q Consensus 40 ~~~~i~~~~~~~~~--g~-------------~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~ 87 (266)
.+.+|.+.|+.... +. ..-+.+.++++++.||++|+-||.|-++..++
T Consensus 184 Gv~~i~L~Pi~~~~~~~~~GY~~~~y~~i~~~~Gt~~d~k~lv~~~H~~Gi~VilD~V~nH~~ 246 (633)
T PRK12313 184 GYTHVEFMPLMEHPLDGSWGYQLTGYFAPTSRYGTPEDFMYLVDALHQNGIGVILDWVPGHFP 246 (633)
T ss_pred CCCEEEeCchhcCCCCCCCCCCCcCcCcCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCC
Confidence 67888888873221 11 22356789999999999999999999997654
No 461
>TIGR00381 cdhD CO dehydrogenase/acetyl-CoA synthase, delta subunit. This is the small subunit of a heterodimer which catalyzes the reaction CO + H2O + Acceptor = CO2 + Reduced acceptor and is involved in the synthesis of acetyl-CoA from CO2 and H2.
Probab=38.99 E-value=74 Score=27.99 Aligned_cols=18 Identities=11% Similarity=0.311 Sum_probs=15.8
Q ss_pred HHHHHHHHHHhcCCEEEE
Q psy6547 62 YLKKVRALCSQYNVLFIA 79 (266)
Q Consensus 62 ~l~~l~~l~~~~g~~li~ 79 (266)
.++++.++|++||..+++
T Consensus 228 Ny~~ia~lAk~yg~~Vvv 245 (389)
T TIGR00381 228 DYEKIANAAKKYGHVVLS 245 (389)
T ss_pred hHHHHHHHHHHhCCeEEE
Confidence 788999999999988874
No 462
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=38.93 E-value=98 Score=27.07 Aligned_cols=58 Identities=9% Similarity=0.002 Sum_probs=35.3
Q ss_pred CHHHHHHHHhc---CCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEecccc
Q psy6547 27 DVDALEAKLKS---NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQT 84 (266)
Q Consensus 27 d~~~l~~~l~~---~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~ 84 (266)
++++++.+++. ..+..+++++...+......+..-++..|..+.+.+++++++|-.|+
T Consensus 237 t~~e~~~Ave~i~~~Gn~~i~L~erg~s~yp~~~~~~ldl~~i~~lk~~~~~PV~~d~~Hs 297 (360)
T PRK12595 237 TIEEFIYAAEYIMSQGNGQIILCERGIRTYEKATRNTLDISAVPILKQETHLPVMVDVTHS 297 (360)
T ss_pred CHHHHHHHHHHHHHCCCCCEEEECCccCCCCCCCCCCcCHHHHHHHHHHhCCCEEEeCCCC
Confidence 67777666643 33445677762212111111222288888888888999999998885
No 463
>PRK12772 bifunctional flagellar biosynthesis protein FliR/FlhB; Provisional
Probab=38.70 E-value=34 Score=32.22 Aligned_cols=44 Identities=14% Similarity=0.215 Sum_probs=30.8
Q ss_pred CCEEEEEEccccCCCCcccCC--------------hHHHHHHHHHHHhcCCEEEEeccc
Q psy6547 39 PNICAFMVEPIQGEAGAVVPD--------------DGYLKKVRALCSQYNVLFIADEVQ 83 (266)
Q Consensus 39 ~~~~~i~~~~~~~~~g~~~~~--------------~~~l~~l~~l~~~~g~~li~De~~ 83 (266)
++-.+|++||.|-.-+-. |+ .+.=.+|+++|++||++++.|-..
T Consensus 517 ~~AdvVitNPTH~AVAL~-Y~~~~~~aP~VvAKG~d~~A~~Ir~~A~e~~VPive~~~L 574 (609)
T PRK12772 517 PKATVVVTNPTHIAVALK-YEEGKDEAPKVVAKGADYVALKIKEIAKENDVPIIENKPL 574 (609)
T ss_pred CCCcEEEECCCceEEEeE-eCCCCCCCCEEEEeeCcHHHHHHHHHHHHCCCcEEeCHHH
Confidence 466788888865332211 22 235678999999999999999655
No 464
>PF14258 DUF4350: Domain of unknown function (DUF4350)
Probab=38.66 E-value=1e+02 Score=19.37 Aligned_cols=52 Identities=13% Similarity=0.013 Sum_probs=33.3
Q ss_pred CCCceeecCCCHHHHHHHHhcCCCEEEEEEccccCCCCcccCC-hHHHHHHHHHHHhcCCEEEEe
Q psy6547 17 MPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPD-DGYLKKVRALCSQYNVLFIAD 80 (266)
Q Consensus 17 ~~~v~~~~~~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~-~~~l~~l~~l~~~~g~~li~D 80 (266)
+.+|..+..+ .++++ . ++..+++++|... ++ ++.+++|.+..++-|-++|+|
T Consensus 18 g~~v~~~~~~-~~~l~----~-~~~tll~i~~~~~------~~~~~~~~~l~~~v~~G~~lvl~a 70 (70)
T PF14258_consen 18 GVKVERWRKP-YEALE----A-DDGTLLVIGPDLR------LSEPEEAEALLEWVEAGNTLVLAA 70 (70)
T ss_pred CCeeEEeccc-HHHhC----C-CCCEEEEEeCCCC------CCchHHHHHHHHHHHcCCEEEEeC
Confidence 4555555443 33332 2 3456677777643 44 478999999999888888765
No 465
>cd01822 Lysophospholipase_L1_like Lysophospholipase L1-like subgroup of SGNH-hydrolases. The best characterized member in this family is TesA, an E. coli periplasmic protein with thioesterase, esterase, arylesterase, protease and lysophospholipase activity.
Probab=38.20 E-value=67 Score=24.08 Aligned_cols=19 Identities=16% Similarity=0.333 Sum_probs=11.2
Q ss_pred hHHHHHHHHHHHhcCCEEE
Q psy6547 60 DGYLKKVRALCSQYNVLFI 78 (266)
Q Consensus 60 ~~~l~~l~~l~~~~g~~li 78 (266)
...-+.+.++|+++++.++
T Consensus 121 ~~~~~~~~~~a~~~~~~~~ 139 (177)
T cd01822 121 RRFAAIYPELAEEYGVPLV 139 (177)
T ss_pred HHHHHHHHHHHHHcCCcEe
Confidence 3455556666777766544
No 466
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=37.82 E-value=45 Score=31.47 Aligned_cols=48 Identities=13% Similarity=0.057 Sum_probs=36.0
Q ss_pred CEEEEEEccccCCCC---------------cccCChHHHHHHHHHHHhcCCEEEEeccccCcC
Q psy6547 40 NICAFMVEPIQGEAG---------------AVVPDDGYLKKVRALCSQYNVLFIADEVQTGLG 87 (266)
Q Consensus 40 ~~~~i~~~~~~~~~g---------------~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~ 87 (266)
.+.+|.+.|+....+ ....+.+.++++++.||++|+-||+|=++..++
T Consensus 170 Gvt~i~L~Pi~e~~~~~~wGY~~~~y~~~~~~~Gt~~dlk~lV~~~H~~Gi~VilD~V~NH~~ 232 (613)
T TIGR01515 170 GFTHIELLPVAEHPFDGSWGYQVTGYYAPTSRFGTPDDFMYFVDACHQAGIGVILDWVPGHFP 232 (613)
T ss_pred CCCEEEECCcccCCCCCCCCCCcccCcccccccCCHHHHHHHHHHHHHCCCEEEEEecccCcC
Confidence 678888888642210 012356789999999999999999999986554
No 467
>PF02142 MGS: MGS-like domain This is a subfamily of this family; InterPro: IPR011607 This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. The known structures in this domain show a common phosphate binding site []. ; PDB: 4A1O_A 3ZZM_A 1ZCZ_A 1M6V_C 1CS0_C 1C30_E 1C3O_G 1BXR_A 1T36_E 1A9X_A ....
Probab=37.08 E-value=28 Score=23.63 Aligned_cols=43 Identities=16% Similarity=0.159 Sum_probs=29.1
Q ss_pred HHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEE
Q psy6547 31 LEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFI 78 (266)
Q Consensus 31 l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li 78 (266)
+.++++++ ++.+|+.+|........ .+-..|++.|-+++++++
T Consensus 52 i~~~i~~~-~IdlVIn~~~~~~~~~~----~dg~~irr~a~~~~Ip~~ 94 (95)
T PF02142_consen 52 IMDLIKNG-KIDLVINTPYPFSDQEH----TDGYKIRRAAVEYNIPLF 94 (95)
T ss_dssp HHHHHHTT-SEEEEEEE--THHHHHT----HHHHHHHHHHHHTTSHEE
T ss_pred HHHHHHcC-CeEEEEEeCCCCccccc----CCcHHHHHHHHHcCCCCc
Confidence 66677544 78888888765432211 267889999999999875
No 468
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=36.84 E-value=1.3e+02 Score=24.85 Aligned_cols=57 Identities=9% Similarity=0.056 Sum_probs=33.6
Q ss_pred CHHHHHHHHhc---CCCEEEEEEc-cccCCCCcccCChHHHHHHHHHHHhcCCEEEEecccc
Q psy6547 27 DVDALEAKLKS---NPNICAFMVE-PIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQT 84 (266)
Q Consensus 27 d~~~l~~~l~~---~~~~~~i~~~-~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~ 84 (266)
++++++.+++. ..+..+++++ .+ +......-..-++..+..+.+..+.+||+|-.|+
T Consensus 134 t~~e~~~A~e~i~~~Gn~~i~L~eRg~-~~Y~~~~~n~~dl~ai~~lk~~~~lPVivd~SHs 194 (250)
T PRK13397 134 TIEEYLGALSYLQDTGKSNIILCERGV-RGYDVETRNMLDIMAVPIIQQKTDLPIIVDVSHS 194 (250)
T ss_pred CHHHHHHHHHHHHHcCCCeEEEEcccc-CCCCCccccccCHHHHHHHHHHhCCCeEECCCCC
Confidence 56666665543 3345677777 33 1111110002277778878777899999998874
No 469
>PRK05601 DNA polymerase III subunit epsilon; Validated
Probab=36.81 E-value=80 Score=27.71 Aligned_cols=69 Identities=12% Similarity=0.173 Sum_probs=42.4
Q ss_pred CCcCcccccCCCCCC--ceeecC--CCHHHHHHHHhc---------CCCEEEEEEccccCCCCcccCChHHHHHHHHHHH
Q psy6547 5 TDPTSYNEFGPHMPG--YNIIPY--NDVDALEAKLKS---------NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCS 71 (266)
Q Consensus 5 ~~~~~~~~~~~~~~~--v~~~~~--~d~~~l~~~l~~---------~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~ 71 (266)
.||+-..+-.|+-.+ |+.-+- -|.+.|.+.+-. .+++-+++||...+..|= .-.|+
T Consensus 283 ~nPG~~~~~~~lv~Gm~v~~~~e~~~~~d~li~~~~~agL~y~~~~~r~tslvv~n~~~~~~gk-----------~~~a~ 351 (377)
T PRK05601 283 ENPGTYEPGKGLVAGMEVVVAPEITMDPDIIIQAIVRAGLAYSEKLTRQTSVVVCNQTRDLDGK-----------AMHAQ 351 (377)
T ss_pred CCCCccCCCCccccCcEEEEeCCccCCHHHHHHHHHHccchhhhccccceeEEEeCCCCCccch-----------hhhhh
Confidence 356655554444333 333332 257776665532 347889999987654442 24578
Q ss_pred hcCCEEEEecccc
Q psy6547 72 QYNVLFIADEVQT 84 (266)
Q Consensus 72 ~~g~~li~De~~~ 84 (266)
++|++|+-|+.+.
T Consensus 352 ~~gipl~~d~~fl 364 (377)
T PRK05601 352 RKGIPLLSDVAFL 364 (377)
T ss_pred hcCCCccCHHHHH
Confidence 8999999998873
No 470
>PF13378 MR_MLE_C: Enolase C-terminal domain-like; PDB: 3FCP_B 3P0W_D 3VFC_A 3VDG_A 3FJ4_B 3CT2_B 3DGB_A 3V3W_A 3V4B_A 3NO1_E ....
Probab=36.79 E-value=59 Score=22.58 Aligned_cols=48 Identities=8% Similarity=0.273 Sum_probs=33.9
Q ss_pred CHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEec
Q psy6547 27 DVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADE 81 (266)
Q Consensus 27 d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De 81 (266)
++.++++++++. .+..+-+.+.. .|.+. ...+++++|+++|+.+..=.
T Consensus 6 ~~~~~~~li~~~-a~d~~~~~~~~--~GGit----~~~~i~~~A~~~gi~~~~h~ 53 (111)
T PF13378_consen 6 SLHDFRRLIEAG-AVDIVQIDPTR--CGGIT----EALRIAALAEAHGIPVMPHS 53 (111)
T ss_dssp SHHHHHHHHHTT-SCSEEEEBHHH--HTSHH----HHHHHHHHHHHTT-EEEEBS
T ss_pred CHHHHHHHHHcC-CCCEEEeCchh--cCCHH----HHHHHHHHHHHhCCCEEecC
Confidence 688899999643 44555555544 33344 99999999999999988654
No 471
>TIGR00196 yjeF_cterm yjeF C-terminal region, hydroxyethylthiazole kinase-related. The present model may hit hydroxyethylthiazole kinase, an enzyme associated with thiamine biosynthesis.
Probab=36.66 E-value=92 Score=25.78 Aligned_cols=60 Identities=17% Similarity=0.142 Sum_probs=39.1
Q ss_pred ccCCCCCCceeecCC-CHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEec
Q psy6547 12 EFGPHMPGYNIIPYN-DVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADE 81 (266)
Q Consensus 12 ~~~~~~~~v~~~~~~-d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De 81 (266)
...+..++++..+.+ ..+.++..+ . ...++++.+. + .+.+.+.++.+.+++++.++|+|-
T Consensus 66 ~i~~~~pe~~~~~~~~~~~~~~~~~--~-~~davvig~G------l-~~~~~~~~l~~~~~~~~~pvVlDa 126 (272)
T TIGR00196 66 LINSVSPELIVHRLGWKVDEDEELL--E-RYDVVVIGPG------L-GQDPSFKKAVEEVLELDKPVVLDA 126 (272)
T ss_pred HHhhcCCEEEEecchhhHHHHHhhh--c-cCCEEEEcCC------C-CCCHHHHHHHHHHHhcCCCEEEEh
Confidence 356777888877664 344555555 2 3456666432 2 333457888888999999999994
No 472
>TIGR00530 AGP_acyltrn 1-acyl-sn-glycerol-3-phosphate acyltransferases. 1-acyl-sn-glycerol-3-phosphate acyltransferase is also called 1-AGP acyltransferase, lysophosphatidic acid acyltransferase, and LPA acyltransferase.
Probab=36.63 E-value=1.5e+02 Score=20.78 Aligned_cols=47 Identities=13% Similarity=0.090 Sum_probs=25.0
Q ss_pred HHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEE
Q psy6547 28 VDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFI 78 (266)
Q Consensus 28 ~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li 78 (266)
.+++.+.+++. ..-+++-|...+..|.. ..+......++.+.|++++
T Consensus 79 ~~~~~~~l~~g-~~v~ifPeG~~~~~~~~---~~f~~g~~~la~~~~~pvv 125 (130)
T TIGR00530 79 LKAAIEVLKQG-RSIGVFPEGTRSRGRDI---LPFKKGAFHIAIKAGVPIL 125 (130)
T ss_pred HHHHHHHHhCC-CEEEEeCCCCCCCCCCC---CCcchhHHHHHHHcCCCEE
Confidence 44455555332 34455555554444432 2345666677777777665
No 473
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=36.42 E-value=1.1e+02 Score=26.64 Aligned_cols=58 Identities=12% Similarity=0.187 Sum_probs=41.5
Q ss_pred CHHHHHHHHhcCC-CEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCC-EEEEecccc
Q psy6547 27 DVDALEAKLKSNP-NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNV-LFIADEVQT 84 (266)
Q Consensus 27 d~~~l~~~l~~~~-~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~-~li~De~~~ 84 (266)
.+++++++++... ++...++-....+...+++...-+++|.+++++.++ .+|+|+-.+
T Consensus 18 ~~~E~~~L~~~~~~~v~~~~~~~~~~~~~~~~~g~gk~~e~~~~~~~~~~~~vi~~~~l~ 77 (351)
T TIGR03156 18 SLEELAELAETAGAEVVGTVTQKRSRPDPATYIGKGKVEEIAELVEELEADLVIFDHELS 77 (351)
T ss_pred hHHHHHHHHHHCCCEEEEEEEEecCCCCCCeEecccHHHHHHHHHHhcCCCEEEECCCCC
Confidence 5888888886643 555555555444444455788899999999998886 778886664
No 474
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=36.34 E-value=1.6e+02 Score=23.66 Aligned_cols=14 Identities=7% Similarity=-0.012 Sum_probs=6.8
Q ss_pred cCCCCCCceeecCC
Q psy6547 13 FGPHMPGYNIIPYN 26 (266)
Q Consensus 13 ~~~~~~~v~~~~~~ 26 (266)
|...+.+.+.|...
T Consensus 77 ~~~~gad~i~~H~E 90 (220)
T PRK08883 77 FAKAGASMITFHVE 90 (220)
T ss_pred HHHhCCCEEEEccc
Confidence 33445555555543
No 475
>PF00926 DHBP_synthase: 3,4-dihydroxy-2-butanone 4-phosphate synthase; InterPro: IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase (4.1.99.12 from EC) (DHBP synthase) (RibB) catalyses the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate, the latter serving as the biosynthetic precursor for the xylene ring of riboflavin []. In Photobacterium leiognathi, the riboflavin synthesis genes ribB (DHBP synthase), ribE (riboflavin synthase), ribH (lumazone synthase) and ribA (GTP cyclohydrolase II) all reside in the lux operon []. RibB is sometimes found as a bifunctional enzyme with GTP cyclohydrolase II that catalyses the first committed step in the biosynthesis of riboflavin (IPR000926 from INTERPRO). No sequences with significant homology to DHBP synthase are found in the metazoa.; GO: 0008686 3,4-dihydroxy-2-butanone-4-phosphate synthase activity, 0009231 riboflavin biosynthetic process; PDB: 1K4O_A 1K4L_A 1K4P_A 1K49_A 1K4I_A 1TKU_A 1TKS_B 2RIS_A 2RIU_A 3MIO_A ....
Probab=36.13 E-value=62 Score=25.56 Aligned_cols=34 Identities=9% Similarity=0.214 Sum_probs=25.8
Q ss_pred CEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEE
Q psy6547 40 NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFI 78 (266)
Q Consensus 40 ~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li 78 (266)
...+++++-... .|.+. ..+++.+++++||+++|
T Consensus 152 ~p~avi~eil~~-dG~~~----~~~~~~~fA~~~~l~~v 185 (194)
T PF00926_consen 152 SPVAVICEILDD-DGDMA----RRDELEEFAKKHGLPIV 185 (194)
T ss_dssp -SBEEEEEBBET-TSSBH----CHHHHHHHHHHTT-EEE
T ss_pred CCcEEEEEEeCC-CCCcC----CHHHHHHHHHHcCCcEE
Confidence 567888886654 66665 88999999999999998
No 476
>cd04918 ACT_AK1-AT_2 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the second of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine (SAM). This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. In its inactive state, Arabidopsis AK1 binds the effectors lysine and SAM (two molecules each) at the interface of two ACT1 domain subunits. The second ACT domain (ACT2), this CD, does not interact with an effector. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=36.13 E-value=97 Score=19.13 Aligned_cols=45 Identities=9% Similarity=0.161 Sum_probs=31.7
Q ss_pred HHHHHHHHHHCCceec--cCCCCEEEEeccCCCCHHHHHHHHHHHHHHH
Q psy6547 212 VYDVCIKMKDAGLVTK--PISNNIIRLSPALNITEQELREGLDIIINTI 258 (266)
Q Consensus 212 ~~~~~~~l~~~gi~~~--~~~~~~iR~~~~~~~t~~~i~~~~~~l~~~~ 258 (266)
..++.+.|.+.||-+. ..+..-..++ +..++++.+++++.|-+.+
T Consensus 17 ~~~i~~aL~~~~I~v~~i~~g~s~~sis--~~v~~~~~~~av~~Lh~~f 63 (65)
T cd04918 17 LERAFHVLYTKGVNVQMISQGASKVNIS--LIVNDSEAEGCVQALHKSF 63 (65)
T ss_pred HHHHHHHHHHCCCCEEEEEecCccceEE--EEEeHHHHHHHHHHHHHHH
Confidence 5678888999998874 2223444444 4478899999998887654
No 477
>COG2159 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]
Probab=36.09 E-value=1.4e+02 Score=25.27 Aligned_cols=52 Identities=19% Similarity=0.359 Sum_probs=36.8
Q ss_pred HHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCc
Q psy6547 28 VDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGL 86 (266)
Q Consensus 28 ~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~ 86 (266)
.+++++.+++ ...+.+.+.|.... ...+...+..+.+.|.++|+++++ |+|.
T Consensus 115 ~~E~er~v~~-~gf~g~~l~p~~~~---~~~~~~~~~pi~~~a~~~gvpv~i---htG~ 166 (293)
T COG2159 115 AEELERRVRE-LGFVGVKLHPVAQG---FYPDDPRLYPIYEAAEELGVPVVI---HTGA 166 (293)
T ss_pred HHHHHHHHHh-cCceEEEecccccC---CCCCChHHHHHHHHHHHcCCCEEE---EeCC
Confidence 3466666643 36788888876532 124455689999999999999998 6554
No 478
>TIGR00506 ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase. Several members of the family are bifunctional, involving both ribA and ribB function. In these cases, ribA tends to be on the C-terminal end of the protein and ribB tends to be on the N-terminal.
Probab=36.00 E-value=80 Score=25.04 Aligned_cols=34 Identities=12% Similarity=0.209 Sum_probs=26.7
Q ss_pred CEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEE
Q psy6547 40 NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFI 78 (266)
Q Consensus 40 ~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li 78 (266)
...++++|-... .|.+. ..+++.++|++||+++|
T Consensus 157 ~p~~vicEil~~-dG~m~----~~~~~~~fA~~~~l~~i 190 (199)
T TIGR00506 157 KPAGVICEMMND-DGTMA----RKPELMEYAKKHNLKLI 190 (199)
T ss_pred CceEEEEEEeCC-CCCcc----CHHHHHHHHHHcCCcEE
Confidence 457777776544 56665 88899999999999987
No 479
>cd04923 ACT_AK-LysC-DapG-like_2 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the second and fourth, of four, ACT domains present in cyanobacteria AK. Also included are the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (B. subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=35.96 E-value=72 Score=18.99 Aligned_cols=45 Identities=16% Similarity=0.273 Sum_probs=29.8
Q ss_pred HHHHHHHHHHCCceeccCCCCEEEEeccCCCCHHHHHHHHHHHHHHH
Q psy6547 212 VYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTI 258 (266)
Q Consensus 212 ~~~~~~~l~~~gi~~~~~~~~~iR~~~~~~~t~~~i~~~~~~l~~~~ 258 (266)
..++.+.|.+.++-+.........++ +..+.++.+++.+.|.+.+
T Consensus 17 ~~~i~~~L~~~~i~v~~i~~s~~~is--~~v~~~~~~~~~~~l~~~l 61 (63)
T cd04923 17 AAKMFKALAEAGINIEMISTSEIKIS--CLVDEDDAEKAVRALHEAF 61 (63)
T ss_pred HHHHHHHHHHCCCCEEEEEccCCeEE--EEEeHHHHHHHHHHHHHHh
Confidence 55688889999887654322223333 4477788888888887654
No 480
>PRK05402 glycogen branching enzyme; Provisional
Probab=35.71 E-value=51 Score=31.82 Aligned_cols=48 Identities=15% Similarity=0.126 Sum_probs=36.3
Q ss_pred CEEEEEEccccCCC---------------CcccCChHHHHHHHHHHHhcCCEEEEeccccCcC
Q psy6547 40 NICAFMVEPIQGEA---------------GAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLG 87 (266)
Q Consensus 40 ~~~~i~~~~~~~~~---------------g~~~~~~~~l~~l~~l~~~~g~~li~De~~~~~~ 87 (266)
.+.+|.+.|+.... -....+.+.++++++.||++|+-||+|-++..++
T Consensus 279 Gv~~i~L~Pi~e~~~~~~~GY~~~~y~ai~~~~Gt~~dfk~lV~~~H~~Gi~VilD~V~NH~~ 341 (726)
T PRK05402 279 GFTHVELLPIAEHPFDGSWGYQPTGYYAPTSRFGTPDDFRYFVDACHQAGIGVILDWVPAHFP 341 (726)
T ss_pred CCCEEEECCcccCCCCCCCCCCcccCCCcCcccCCHHHHHHHHHHHHHCCCEEEEEECCCCCC
Confidence 68889988873211 1112367789999999999999999999986553
No 481
>PRK05234 mgsA methylglyoxal synthase; Validated
Probab=35.32 E-value=1.3e+02 Score=22.43 Aligned_cols=47 Identities=13% Similarity=0.105 Sum_probs=32.2
Q ss_pred HHHHHHHhcCCCEEEEEEccc-cCCCCcccCChHHHHHHHHHHHhcCCEEEEe
Q psy6547 29 DALEAKLKSNPNICAFMVEPI-QGEAGAVVPDDGYLKKVRALCSQYNVLFIAD 80 (266)
Q Consensus 29 ~~l~~~l~~~~~~~~i~~~~~-~~~~g~~~~~~~~l~~l~~l~~~~g~~li~D 80 (266)
..+..+++ ..++.+|+..|. .+..+. ..+...|++.|-+|+++++..
T Consensus 65 ~~i~~~I~-~g~i~lVInt~dp~~~~~~----~~D~~~IRR~Av~~~IP~~T~ 112 (142)
T PRK05234 65 QQIGALIA-EGKIDMLIFFRDPLTAQPH----DPDVKALLRLADVWNIPVATN 112 (142)
T ss_pred hhHHHHHH-cCceeEEEEecCCCCCCcc----cchHHHHHHHHHHcCCCEEcC
Confidence 44666664 447888887662 233331 237889999999999999855
No 482
>PRK05702 flhB flagellar biosynthesis protein FlhB; Reviewed
Probab=35.22 E-value=42 Score=29.33 Aligned_cols=44 Identities=16% Similarity=0.186 Sum_probs=29.5
Q ss_pred CCEEEEEEccccCCCCcccC--------------ChHHHHHHHHHHHhcCCEEEEeccc
Q psy6547 39 PNICAFMVEPIQGEAGAVVP--------------DDGYLKKVRALCSQYNVLFIADEVQ 83 (266)
Q Consensus 39 ~~~~~i~~~~~~~~~g~~~~--------------~~~~l~~l~~l~~~~g~~li~De~~ 83 (266)
++-.+|++||.|-.-+.. | ....=.+|+++|+++|++++.|-..
T Consensus 261 ~~AdVVItNPTH~AVal~-Y~~~~~~aP~vvakg~~~~A~~i~~~A~~~~vpi~~~~~L 318 (359)
T PRK05702 261 PKADVVITNPTHYAVALK-YDRGKMAAPVVVAKGVDEVALKIREIAREHNVPIVENPPL 318 (359)
T ss_pred CCCcEEEECCCceEEEeE-eCCCCCCCCEEEEeeCcHHHHHHHHHHHHcCCCEEeCHHH
Confidence 356777788764322211 2 1235578999999999999999555
No 483
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=35.13 E-value=97 Score=27.69 Aligned_cols=61 Identities=13% Similarity=0.200 Sum_probs=43.9
Q ss_pred CCceeecCCCHHHHHHHHhcCCCEEEEEEccccCC--------CCcccCChHHHHHHHHHHHhcCCEEEE
Q psy6547 18 PGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGE--------AGAVVPDDGYLKKVRALCSQYNVLFIA 79 (266)
Q Consensus 18 ~~v~~~~~~d~~~l~~~l~~~~~~~~i~~~~~~~~--------~g~~~~~~~~l~~l~~l~~~~g~~li~ 79 (266)
.++...+..+++++.+.+++. ++.++++++++.. +|++.--++-=.+|.++|++.|+.++.
T Consensus 147 ~~l~l~aEt~~e~I~~~l~~~-~p~lvVIDSIQT~~s~~~~SapGsVsQVRe~t~~L~~~AK~~~i~~fi 215 (456)
T COG1066 147 NNLYLLAETNLEDIIAELEQE-KPDLVVIDSIQTLYSEEITSAPGSVSQVREVAAELMRLAKTKNIAIFI 215 (456)
T ss_pred cceEEehhcCHHHHHHHHHhc-CCCEEEEeccceeecccccCCCCcHHHHHHHHHHHHHHHHHcCCeEEE
Confidence 566777777899999999653 6788888776432 254443455667788999999987763
No 484
>KOG0635|consensus
Probab=34.75 E-value=1.9e+02 Score=22.04 Aligned_cols=65 Identities=11% Similarity=0.067 Sum_probs=46.4
Q ss_pred cCccceeeEEEEeeCccch--HHHHHHHHHHCCceeccCCCCEEEEecc--CCCCHHHHHHHHHHHHHHHHH
Q psy6547 193 GGLKKSINTLILSVSAILE--VYDVCIKMKDAGLVTKPISNNIIRLSPA--LNITEQELREGLDIIINTINT 260 (266)
Q Consensus 193 ~g~~~~~~~~~~~~~~~~~--~~~~~~~l~~~gi~~~~~~~~~iR~~~~--~~~t~~~i~~~~~~l~~~~~~ 260 (266)
.|+ .+|+.--+.++.+ +=.+.+.|.++|...+...+.-+|+.+. +...++|=.+-+.|+.++.+-
T Consensus 30 kGc---viWiTGLSgSGKStlACaL~q~L~qrgkl~Y~LDGDNvRhGLN~DL~F~a~dR~ENIRRigeVaKL 98 (207)
T KOG0635|consen 30 KGC---VIWITGLSGSGKSTLACALSQALLQRGKLTYILDGDNVRHGLNKDLGFKAEDRNENIRRIGEVAKL 98 (207)
T ss_pred CCc---EEEEeccCCCCchhHHHHHHHHHHhcCceEEEecCcccccccccccCcchhhhhhhHHHHHHHHHH
Confidence 466 7787755533332 4567788999999999887888888765 556777777777787776543
No 485
>PF02603 Hpr_kinase_N: HPr Serine kinase N terminus; InterPro: IPR011126 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents the N-terminal region of Hpr Serine/threonine kinase PtsK. This kinase is the sensor in a multicomponent phosphorelay system in control of carbon catabolic repression in bacteria []. This kinase in unusual in that it recognises the tertiary structure of its target and is a member of a novel family unrelated to any previously described protein phosphorylating enzymes []. X-ray analysis of the full-length crystalline enzyme from Staphylococcus xylosus at a resolution of 1.95 A shows the enzyme to consist of two clearly separated domains that are assembled in a hexameric structure resembling a three-bladed propeller. The blades are formed by two N-terminal domains each, and the compact central hub assembles the C-terminal kinase domains []. ; GO: 0000155 two-component sensor activity, 0004672 protein kinase activity, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay), 0006109 regulation of carbohydrate metabolic process; PDB: 1KNX_B 1KO7_A.
Probab=34.67 E-value=47 Score=24.11 Aligned_cols=39 Identities=18% Similarity=0.167 Sum_probs=21.4
Q ss_pred HHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEe
Q psy6547 30 ALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIAD 80 (266)
Q Consensus 30 ~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~D 80 (266)
.+++++ ..++.++++.... ..-+.+.++|++++++|+.=
T Consensus 73 ~l~~l~--~~~~P~iIvt~~~----------~~p~~l~e~a~~~~ipll~t 111 (127)
T PF02603_consen 73 RLEKLF--SYNPPCIIVTRGL----------EPPPELIELAEKYNIPLLRT 111 (127)
T ss_dssp HHHHHC--TTT-S-EEEETTT-------------HHHHHHHHHCT--EEEE
T ss_pred HHHHHh--CCCCCEEEEECcC----------CCCHHHHHHHHHhCCcEEEc
Confidence 355555 3356666665333 16678889999999999854
No 486
>KOG3350|consensus
Probab=34.58 E-value=20 Score=27.79 Aligned_cols=40 Identities=18% Similarity=0.140 Sum_probs=33.1
Q ss_pred cccccCCCCCCceeecCCCHHHHHHHHhcCCCEEEEEEcccc
Q psy6547 9 SYNEFGPHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQ 50 (266)
Q Consensus 9 ~~~~~~~~~~~v~~~~~~d~~~l~~~l~~~~~~~~i~~~~~~ 50 (266)
+.+.|..++.++++.+||.+.++-.-|+.+ .-.|+..|++
T Consensus 106 fDkRFe~yg~eFvfYDyN~p~dlp~~lk~~--fdiivaDPPf 145 (217)
T KOG3350|consen 106 FDKRFELYGTEFVFYDYNCPLDLPDELKAH--FDIIVADPPF 145 (217)
T ss_pred ehhhHHhccceeEEeccCCCCCCHHHHHhc--ccEEEeCCcc
Confidence 346788999999999999988888888654 7788888875
No 487
>cd00411 Asparaginase Asparaginase (amidohydrolase): Asparaginases are tetrameric enzymes that catalyze the hydrolysis of asparagine to aspartic acid and ammonia. In bacteria, there are two classes of amidohydrolases, one highly specific for asparagine and localised to the periplasm, and a second (asparaginase- glutaminase) present in the cytosol that hydrolyzises both asparagine and glutamine with similar specificities.
Probab=34.50 E-value=1.5e+02 Score=25.46 Aligned_cols=55 Identities=18% Similarity=0.333 Sum_probs=34.9
Q ss_pred CCceeec-CC--CHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEE
Q psy6547 18 PGYNIIP-YN--DVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIA 79 (266)
Q Consensus 18 ~~v~~~~-~~--d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~ 79 (266)
++|..+. |+ |.+.++.+++ ...++++++... .|.+ +.++++.|.+.. +.|+++|+
T Consensus 210 ~~V~il~~~pG~~~~~l~~~~~--~g~~GiVl~~~G--~Gn~--p~~~~~~l~~a~-~~gi~VV~ 267 (323)
T cd00411 210 PKVGILYLYPGISAEAVRAFLR--AGYKGIVLAGYG--AGNV--PTDLIDELEEAA-ERGVVVVN 267 (323)
T ss_pred CCEEEEEECCCCCHHHHHHHHh--CCCCEEEEEeEC--CCCC--CHHHHHHHHHHH-HCCCEEEE
Confidence 3454443 33 7888888883 357899988653 2333 346777777655 56887764
No 488
>cd01827 sialate_O-acetylesterase_like1 sialate O-acetylesterase_like family of the SGNH hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=34.37 E-value=87 Score=23.84 Aligned_cols=49 Identities=14% Similarity=0.219 Sum_probs=28.0
Q ss_pred HHHHHHhc----CCCEEEEEEccccCCCCcc--cC----ChHHHHHHHHHHHhcCCEEE
Q psy6547 30 ALEAKLKS----NPNICAFMVEPIQGEAGAV--VP----DDGYLKKVRALCSQYNVLFI 78 (266)
Q Consensus 30 ~l~~~l~~----~~~~~~i~~~~~~~~~g~~--~~----~~~~l~~l~~l~~~~g~~li 78 (266)
.+++++++ .++.+.++++|........ .- .....+.+.++|+++|+.+|
T Consensus 94 ~l~~li~~i~~~~~~~~iil~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~v 152 (188)
T cd01827 94 DYETMIDSFQALPSKPKIYICYPIPAYYGDGGFINDNIIKKEIQPMIDKIAKKLNLKLI 152 (188)
T ss_pred HHHHHHHHHHHHCCCCeEEEEeCCcccccCCCccchHHHHHHHHHHHHHHHHHcCCcEE
Confidence 44555542 3466777777653221111 01 12356678899999998875
No 489
>cd07018 S49_SppA_67K_type Signal peptide peptidase A (SppA) 67K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 67K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily contain an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown that members in this subfamily, mostly bacterial, are serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys
Probab=34.35 E-value=1.3e+02 Score=24.10 Aligned_cols=47 Identities=17% Similarity=0.264 Sum_probs=27.3
Q ss_pred CHHHHHHHHhc---CCCEEEEEEccccCCCCcccCChHHHHHHHHHH---HhcCCEEE
Q psy6547 27 DVDALEAKLKS---NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALC---SQYNVLFI 78 (266)
Q Consensus 27 d~~~l~~~l~~---~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~---~~~g~~li 78 (266)
..+++.+.|++ ++++++|++.- .+++|... .+++|.+.. ++.+.++|
T Consensus 30 ~~~~l~~~l~~a~~d~~ik~vvL~~-~s~gg~~~----~~~el~~~i~~~~~~~kpVi 82 (222)
T cd07018 30 SLRDLLEALEKAAEDDRIKGIVLDL-DGLSGGLA----KLEELRQALERFRASGKPVI 82 (222)
T ss_pred cHHHHHHHHHHHhcCCCeEEEEEEC-CCCCCCHH----HHHHHHHHHHHHHHhCCeEE
Confidence 45666666544 55899999885 44455543 344444333 44567766
No 490
>cd01422 MGS Methylglyoxal synthase catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The first part of the catalytic mechanism is believed to be similar to TIM (triosephosphate isomerase) in that both enzymes utilize DHAP to form an ene-diolate phosphate intermediate. In MGS, the second catalytic step is characterized by the elimination of phosphate and collapse of the enediolate to form methylglyoxal instead of reprotonation to form the isomer glyceraldehyde 3-phosphate, as in TIM. This is the first reaction in the methylglyoxal bypass of the Embden-Myerhoff glycolytic pathway and is believed to provide physiological benefits under non-ideal growth conditions in bacteria.
Probab=33.44 E-value=1.7e+02 Score=20.68 Aligned_cols=46 Identities=17% Similarity=0.216 Sum_probs=31.9
Q ss_pred HHHHHHHhcCCCEEEEEEcccc-CCCCcccCChHHHHHHHHHHHhcCCEEEE
Q psy6547 29 DALEAKLKSNPNICAFMVEPIQ-GEAGAVVPDDGYLKKVRALCSQYNVLFIA 79 (266)
Q Consensus 29 ~~l~~~l~~~~~~~~i~~~~~~-~~~g~~~~~~~~l~~l~~l~~~~g~~li~ 79 (266)
..+..+++ +.++.+|+..|.. +..+. ..+-..|++.|-+++++++.
T Consensus 60 ~~i~~~i~-~g~i~~VInt~~~~~~~~~----~~dg~~iRr~a~~~~Ip~~T 106 (115)
T cd01422 60 QQIGALIA-EGEIDAVIFFRDPLTAQPH----EPDVKALLRLCDVYNIPLAT 106 (115)
T ss_pred hHHHHHHH-cCceeEEEEcCCCCCCCcc----cccHHHHHHHHHHcCCCEEE
Confidence 44566664 4478888877653 43331 23788999999999999874
No 491
>PRK14706 glycogen branching enzyme; Provisional
Probab=33.24 E-value=56 Score=31.02 Aligned_cols=30 Identities=13% Similarity=-0.031 Sum_probs=26.3
Q ss_pred ChHHHHHHHHHHHhcCCEEEEeccccCcCC
Q psy6547 59 DDGYLKKVRALCSQYNVLFIADEVQTGLGR 88 (266)
Q Consensus 59 ~~~~l~~l~~l~~~~g~~li~De~~~~~~~ 88 (266)
+.+.++++++.||++|+-||+|=++..++.
T Consensus 215 ~~~~~~~lv~~~H~~gi~VilD~v~nH~~~ 244 (639)
T PRK14706 215 TPEDFKYLVNHLHGLGIGVILDWVPGHFPT 244 (639)
T ss_pred CHHHHHHHHHHHHHCCCEEEEEecccccCc
Confidence 467899999999999999999999976643
No 492
>KOG2741|consensus
Probab=33.05 E-value=1.1e+02 Score=26.51 Aligned_cols=61 Identities=7% Similarity=-0.048 Sum_probs=41.0
Q ss_pred CCCceeecCCCHHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEEEecccc
Q psy6547 17 MPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQT 84 (266)
Q Consensus 17 ~~~v~~~~~~d~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li~De~~~ 84 (266)
-.+++.|.-+.+..-|-....-..-|.|+||-+.. ++.+..++|.+.|+++| +.++|..+.
T Consensus 72 ~vDvVyi~~~~~qH~evv~l~l~~~K~VL~EKPla------~n~~e~~~iveaA~~rg-v~~meg~~~ 132 (351)
T KOG2741|consen 72 EVDVVYISTPNPQHYEVVMLALNKGKHVLCEKPLA------MNVAEAEEIVEAAEARG-VFFMEGLWW 132 (351)
T ss_pred CcCEEEeCCCCccHHHHHHHHHHcCCcEEeccccc------CCHHHHHHHHHHHHHcC-cEEEeeeee
Confidence 45788888776654443321111235599997764 56679999999999999 667776663
No 493
>PRK01792 ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase; Provisional
Probab=32.95 E-value=95 Score=24.94 Aligned_cols=34 Identities=6% Similarity=0.229 Sum_probs=26.4
Q ss_pred CEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEE
Q psy6547 40 NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFI 78 (266)
Q Consensus 40 ~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li 78 (266)
...+++||-.. ..|.+. .++++.++|++||++++
T Consensus 167 ~p~~vicEil~-~dG~ma----~~~~~~~fA~~~~l~~i 200 (214)
T PRK01792 167 KEAGVICEITN-DDGTMA----RTPEIVEFAKKFGYAVV 200 (214)
T ss_pred CceEEEEEEec-CCCCcc----CHHHHHHHHHHcCCcEE
Confidence 35777777654 446665 88999999999999997
No 494
>cd01821 Rhamnogalacturan_acetylesterase_like Rhamnogalacturan_acetylesterase_like subgroup of SGNH-hydrolases. Rhamnogalacturan acetylesterase removes acetyl esters from rhamnogalacturonan substrates, and renders them susceptible to degradation by rhamnogalacturonases. Rhamnogalacturonans are highly branched regions in pectic polysaccharides, consisting of repeating -(1,2)-L-Rha-(1,4)-D-GalUA disaccharide units, with many rhamnose residues substituted by neutral oligosaccharides such as arabinans, galactans and arabinogalactans. Extracellular enzymes participating in the degradation of plant cell wall polymers, such as Rhamnogalacturonan acetylesterase, would typically be found in saprophytic and plant pathogenic fungi and bacteria.
Probab=32.91 E-value=1.2e+02 Score=23.33 Aligned_cols=39 Identities=21% Similarity=0.330 Sum_probs=24.6
Q ss_pred CEEEEEEccccCCC---C--cccCChHHHHHHHHHHHhcCCEEE
Q psy6547 40 NICAFMVEPIQGEA---G--AVVPDDGYLKKVRALCSQYNVLFI 78 (266)
Q Consensus 40 ~~~~i~~~~~~~~~---g--~~~~~~~~l~~l~~l~~~~g~~li 78 (266)
....|+++|..... + ....-..+-+.+.++|+++|++++
T Consensus 107 ~~~~il~tp~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~v 150 (198)
T cd01821 107 GATPILVTPVTRRTFDEGGKVEDTLGDYPAAMRELAAEEGVPLI 150 (198)
T ss_pred CCeEEEECCccccccCCCCcccccchhHHHHHHHHHHHhCCCEE
Confidence 46777787753211 1 011124567899999999998874
No 495
>PRK00910 ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase; Provisional
Probab=32.89 E-value=97 Score=24.97 Aligned_cols=34 Identities=12% Similarity=0.130 Sum_probs=26.8
Q ss_pred CEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEE
Q psy6547 40 NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFI 78 (266)
Q Consensus 40 ~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li 78 (266)
...+++||-... .|.+. .++++.++|++||+++|
T Consensus 168 ~p~~vicEil~~-dG~ma----~~~~l~~fA~~h~l~~i 201 (218)
T PRK00910 168 QPAGVLCELTNP-DGTMA----KTPEIIAFGKLHNMPVL 201 (218)
T ss_pred CceEEEEEEecC-CCCcC----CHHHHHHHHHHcCCcEE
Confidence 457778876553 46665 88999999999999997
No 496
>cd00394 Clp_protease_like Caseinolytic protease (ClpP) is an ATP-dependent protease. Clp protease (caseinolytic protease; ClpP; endopeptidase Clp; Peptidase S14; ATP-dependent protease, ClpAP)-like enzymes are highly conserved serine proteases and belong to the ClpP/Crotonase superfamily. Included in this family are Clp proteases that are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. The functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activity in the presence of ATP. Active site consists of the triad Ser, His and Asp, preferring hydrophobic or non-polar residues at P1 or P1' positions. The protease exists as a tetradec
Probab=32.81 E-value=1.2e+02 Score=22.54 Aligned_cols=48 Identities=17% Similarity=0.142 Sum_probs=28.2
Q ss_pred CCHHHHHHHHhc---CCCEEEEEEccccCCCCcccCChHHHHHHHHHHHhcCCEEE
Q psy6547 26 NDVDALEAKLKS---NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFI 78 (266)
Q Consensus 26 ~d~~~l~~~l~~---~~~~~~i~~~~~~~~~g~~~~~~~~l~~l~~l~~~~g~~li 78 (266)
...+++.+.|++ ++++++|++.. ++++|.+. ...+|.+..++...+++
T Consensus 11 ~~~~~l~~~l~~a~~d~~~~~ivl~~-~s~Gg~~~----~~~~i~~~l~~~~kpvv 61 (161)
T cd00394 11 VSADQLAAQIRFAEADNSVKAIVLEV-NTPGGRVD----AGMNIVDALQASRKPVI 61 (161)
T ss_pred chHHHHHHHHHHHHhCCCCceEEEEE-ECCCcCHH----HHHHHHHHHHHhCCCEE
Confidence 355666666643 44678887753 34566553 55666666655555555
No 497
>PF01301 Glyco_hydro_35: Glycosyl hydrolases family 35; InterPro: IPR001944 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 35 GH35 from CAZY comprises enzymes with only one known activity; beta-galactosidase (3.2.1.23 from EC). Mammalian beta-galactosidase is a lysosomal enzyme (gene GLB1) which cleaves the terminal galactose from gangliosides, glycoproteins, and glycosaminoglycans and whose deficiency is the cause of the genetic disease Gm(1) gangliosidosis (Morquio disease type B).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3OGS_A 3OGV_A 3OGR_A 3OG2_A 1TG7_A 1XC6_A 3THC_C 3THD_D 3D3A_A 4E8D_B ....
Probab=32.73 E-value=30 Score=29.60 Aligned_cols=69 Identities=12% Similarity=0.061 Sum_probs=38.2
Q ss_pred cccCCCCCCceeecCCCHHHHHHHHhc---CC-CEEEEEEccc-cCC-CCcccCC-hHHHHHHHHHHHhcCCEEEEe
Q psy6547 11 NEFGPHMPGYNIIPYNDVDALEAKLKS---NP-NICAFMVEPI-QGE-AGAVVPD-DGYLKKVRALCSQYNVLFIAD 80 (266)
Q Consensus 11 ~~~~~~~~~v~~~~~~d~~~l~~~l~~---~~-~~~~i~~~~~-~~~-~g~~~~~-~~~l~~l~~l~~~~g~~li~D 80 (266)
++|.++...++.++.+ .+..+..|++ .. ++-.+++-+. +.+ .|..-.+ ..++.+..++|+++|+.||+-
T Consensus 7 ~~~~~~~Ge~hy~r~p-~~~W~~~l~k~ka~G~n~v~~yv~W~~he~~~g~~df~g~~dl~~f~~~a~~~gl~vilr 82 (319)
T PF01301_consen 7 KPFFILSGEFHYFRIP-PEYWRDRLQKMKAAGLNTVSTYVPWNLHEPEEGQFDFTGNRDLDRFLDLAQENGLYVILR 82 (319)
T ss_dssp EEE-EEEEEE-GGGS--GGGHHHHHHHHHHTT-SEEEEE--HHHHSSBTTB---SGGG-HHHHHHHHHHTT-EEEEE
T ss_pred EEEEEEEeeeccccCC-hhHHHHHHHHHHhCCcceEEEeccccccCCCCCcccccchhhHHHHHHHHHHcCcEEEec
Confidence 3566667777777776 5544544433 33 6777777664 222 3544333 347999999999999998854
No 498
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=32.66 E-value=54 Score=23.18 Aligned_cols=25 Identities=20% Similarity=0.232 Sum_probs=20.8
Q ss_pred hHHHHHHHHHHHhcCC-EEEEecccc
Q psy6547 60 DGYLKKVRALCSQYNV-LFIADEVQT 84 (266)
Q Consensus 60 ~~~l~~l~~l~~~~g~-~li~De~~~ 84 (266)
.+.++.+.+..++++. +||+||++.
T Consensus 73 ~~l~~~~~~~l~~~~~~~lviDe~~~ 98 (131)
T PF13401_consen 73 DELRSLLIDALDRRRVVLLVIDEADH 98 (131)
T ss_dssp HHHHHHHHHHHHHCTEEEEEEETTHH
T ss_pred HHHHHHHHHHHHhcCCeEEEEeChHh
Confidence 4466888888888887 999999995
No 499
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=32.56 E-value=50 Score=31.68 Aligned_cols=27 Identities=15% Similarity=0.014 Sum_probs=24.0
Q ss_pred hHHHHHHHHHHHhcCCEEEEeccccCc
Q psy6547 60 DGYLKKVRALCSQYNVLFIADEVQTGL 86 (266)
Q Consensus 60 ~~~l~~l~~l~~~~g~~li~De~~~~~ 86 (266)
.+.++++++-||++|+-||+|-++...
T Consensus 244 ~~efk~LV~~~H~~GI~VIlDvV~NHt 270 (688)
T TIGR02100 244 VAEFKTMVRALHDAGIEVILDVVYNHT 270 (688)
T ss_pred HHHHHHHHHHHHHCCCEEEEEECcCCc
Confidence 467999999999999999999999654
No 500
>PF01248 Ribosomal_L7Ae: Ribosomal protein L7Ae/L30e/S12e/Gadd45 family; InterPro: IPR004038 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, ribosomal protein L30 from eukaryotes and archaebacteria, Gadd45 and MyD118 [].; PDB: 2CZW_A 3V7E_B 2QEX_F 1YJ9_F 1VQ8_F 1YJN_F 3I56_F 1VQ6_F 2OTJ_F 1YIJ_F ....
Probab=32.28 E-value=1.6e+02 Score=19.76 Aligned_cols=47 Identities=17% Similarity=0.261 Sum_probs=31.1
Q ss_pred HHHHHHHHhcCCCEEEEEEccccCCCCcccCChHHHHH-HHHHHHhcCCEEEEeccc
Q psy6547 28 VDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKK-VRALCSQYNVLFIADEVQ 83 (266)
Q Consensus 28 ~~~l~~~l~~~~~~~~i~~~~~~~~~g~~~~~~~~l~~-l~~l~~~~g~~li~De~~ 83 (266)
..+..+.+++. +.+++++-..-+ +..+.. +..+|.+++++++.=...
T Consensus 20 ~~~v~k~l~~~-~~~lvilA~d~~--------~~~~~~~l~~~c~~~~Ip~~~~~s~ 67 (95)
T PF01248_consen 20 IKEVLKALKKG-KAKLVILAEDCS--------PDSIKKHLPALCEEKNIPYVFVPSK 67 (95)
T ss_dssp HHHHHHHHHTT-CESEEEEETTSS--------SGHHHHHHHHHHHHTTEEEEEESHH
T ss_pred hHHHHHHHHcC-CCcEEEEcCCCC--------hhhhcccchhheeccceeEEEECCH
Confidence 45566666444 677777664432 235555 889999999999865543
Done!