RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy6547
(266 letters)
>gnl|CDD|130940 TIGR01885, Orn_aminotrans, ornithine aminotransferase. This model
describes the final step in the biosynthesis of
ornithine from glutamate via the non-acetylated pathway.
Ornithine amino transferase takes L-glutamate
5-semialdehyde and makes it into ornithine, which is
used in the urea cycle, as well as in the biosynthesis
of arginine. This model includes low-GC bacteria and
eukaryotic species. The genes from two species are
annotated as putative acetylornithine aminotransferases
- one from Porphyromonas gingivalis (OMNI|PG1271), and
the other from Staphylococcus aureus (OMNI|SA0170).
After homology searching using BLAST it was determined
that these two sequences were most closely related to
ornithine aminotransferases. This model's seed includes
one characterized hit, from Bacillus subtilis
(SP|P38021).
Length = 401
Score = 371 bits (955), Expect = e-129
Identities = 148/257 (57%), Positives = 194/257 (75%), Gaps = 7/257 (2%)
Query: 5 TDPTSYNEFGPHMPGYNIIPYNDVDALEAKLKS-NPNICAFMVEPIQGEAGAVVPDDGYL 63
TDP S FGP++PG+ IPYN+++ALE L+ PN+CAF+VEPIQGEAG VVPDDGYL
Sbjct: 150 TDPDSRTNFGPYVPGFKKIPYNNLEALEEALEDHGPNVCAFIVEPIQGEAGVVVPDDGYL 209
Query: 64 KKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLA 123
KKVR LC+++NVL IADE+QTGLGRTGKLL + +E+V+PDIV+LGKALSGG+YP+SAVLA
Sbjct: 210 KKVRELCTKHNVLLIADEIQTGLGRTGKLLCVDHENVKPDIVLLGKALSGGVYPVSAVLA 269
Query: 124 DDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSSPANK 183
DD+VM T+ PG HGSTYGGNPLAC +A+ AL+V+ EE + ENA K+GEIFR +L
Sbjct: 270 DDDVMLTIKPGEHGSTYGGNPLACAVAVAALEVLEEEKLAENAEKLGEIFRDQLK--KLP 327
Query: 184 SKASFKLSSGGLKKSINTLILSVSAIL-EVYDVCIKMKDAGLVTKPISNNIIRLSPALNI 242
++ GL +N +++ S +D+C+K+K+ GL+ KP NIIRL+P L I
Sbjct: 328 KPIITEVRGRGL---LNAIVIDESKTGRTAWDLCLKLKEKGLLAKPTHGNIIRLAPPLVI 384
Query: 243 TEQELREGLDIIINTIN 259
TE++L EGL+II I+
Sbjct: 385 TEEQLDEGLEIIKKVID 401
>gnl|CDD|240281 PTZ00125, PTZ00125, ornithine aminotransferase-like protein;
Provisional.
Length = 400
Score = 365 bits (940), Expect = e-127
Identities = 142/262 (54%), Positives = 192/262 (73%), Gaps = 4/262 (1%)
Query: 4 TTDPTSYNEFGPHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYL 63
+TDP YN FGP +PG+ ++ YNDV+ALE L+ +PN+ AF+VEPIQGEAG +VPDDGYL
Sbjct: 143 STDPKCYNNFGPFVPGFELVDYNDVEALEKLLQ-DPNVAAFIVEPIQGEAGVIVPDDGYL 201
Query: 64 KKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLA 123
K+V LC +YNVL I DE+QTGLGRTGKLLA +E V+PDIV+LGKALSGGLYPISAVLA
Sbjct: 202 KQVYELCKKYNVLLIVDEIQTGLGRTGKLLAHDHEGVKPDIVLLGKALSGGLYPISAVLA 261
Query: 124 DDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSSPANK 183
+D+VM + PG HGSTYGGNPLAC +A+ AL+V+ EE + ENA ++GE+FR L K
Sbjct: 262 NDDVMLVIKPGEHGSTYGGNPLACAVAVEALEVLKEEKLAENAQRLGEVFRDGLKELLKK 321
Query: 184 SKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNIT 243
S ++ GL +N ++ S + +D+C+K+K+ GL+ KP +NIIR +P L IT
Sbjct: 322 SPWVKEIRGKGL---LNAIVFDHSDGVNAWDLCLKLKENGLLAKPTHDNIIRFAPPLVIT 378
Query: 244 EQELREGLDIIINTINTMAAKK 265
+++L + L+II + + + K
Sbjct: 379 KEQLDQALEIIKKVLKSFDSNK 400
>gnl|CDD|215335 PLN02624, PLN02624, ornithine-delta-aminotransferase.
Length = 474
Score = 340 bits (874), Expect = e-116
Identities = 126/268 (47%), Positives = 178/268 (66%), Gaps = 11/268 (4%)
Query: 6 DPTSYNEFGPHMPGYNIIPYNDVDALEAKLKSN-PNICAFMVEPIQGEAGAVVPDDGYLK 64
D + FGP +PG+ + + D+DALE + + I AF+ EPIQGEAG V+P DGYLK
Sbjct: 189 DNEATRGFGPLLPGHLKVDFGDLDALEKIFEEDGDRIAAFLFEPIQGEAGVVIPPDGYLK 248
Query: 65 KVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLAD 124
VR LCS++NVL IADE+QTGL RTGK+LA +E+VRPD+VILGKAL GG+ P+SAVLAD
Sbjct: 249 AVRELCSKHNVLMIADEIQTGLARTGKMLACDWEEVRPDVVILGKALGGGVIPVSAVLAD 308
Query: 125 DEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSEL-SSPANK 183
+VM + PG HGST+GGNPLA +AM AL V+ +E + E + K+G+ R +L
Sbjct: 309 KDVMLCIKPGEHGSTFGGNPLASAVAMAALQVVQDEKLAERSAKLGQELRDQLQKIQKQF 368
Query: 184 SKASFKLSSGGLKKSINTLILSVSAILEV--YDVCIKMKDAGLVTKPISNNIIRLSPALN 241
K ++ GL +N ++L+ + V YDVC+K+K+ GL+ KP + IIRL+P L+
Sbjct: 369 PKLIKEVRGRGL---LNAVVLNSPKLGPVSAYDVCLKLKERGLLAKPTHDTIIRLAPPLS 425
Query: 242 ITEQELREGL----DIIINTINTMAAKK 265
I+E EL+E D++ + + + + K
Sbjct: 426 ISEDELQECSKALSDVLEHDLPKLQSAK 453
>gnl|CDD|227325 COG4992, ArgD, Ornithine/acetylornithine aminotransferase [Amino
acid transport and metabolism].
Length = 404
Score = 284 bits (729), Expect = 5e-95
Identities = 105/268 (39%), Positives = 152/268 (56%), Gaps = 18/268 (6%)
Query: 3 ITTDPTSYNEFGPHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGY 62
T P FGP +PG+ +P+ND++ALEA + + + A +VEPIQGE G + +
Sbjct: 149 ATGQPKYRKGFGPLLPGFRHVPFNDIEALEAAI--DEDTAAVIVEPIQGEGGVIPAPPEF 206
Query: 63 LKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVL 122
LK +R LC ++ L I DEVQTGLGRTGKL A + V PDI+ L KAL GG +PI A+L
Sbjct: 207 LKALRELCDEHGALLILDEVQTGLGRTGKLFAYEHYGVEPDILTLAKALGGG-FPIGAML 265
Query: 123 ADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSSPAN 182
A +E+ PG HGST+GGNPLAC +A+ L+V+LEE ++EN + GE L
Sbjct: 266 ATEEIASAFTPGDHGSTFGGNPLACAVALAVLEVLLEEGLLENVREKGEYLLQRL----R 321
Query: 183 KSKASFKLSSG----GLKKSINTLI-LSVSAILEVYDVCIKMKDAGLVTKPISNNIIRLS 237
+ K + L GL +I + + D+ +++ G++ P N+IR
Sbjct: 322 ELKRRYPLVKEVRGRGL------MIGIELKEPYRARDIVRALREEGVLVLPAGPNVIRFL 375
Query: 238 PALNITEQELREGLDIIINTINTMAAKK 265
P L ITE+E+ E LD + + +A+
Sbjct: 376 PPLVITEEEIDEALDALERALAAASARV 403
>gnl|CDD|234848 PRK00854, rocD, ornithine--oxo-acid transaminase; Reviewed.
Length = 401
Score = 263 bits (673), Expect = 1e-86
Identities = 116/268 (43%), Positives = 160/268 (59%), Gaps = 30/268 (11%)
Query: 4 TTDPTSYNEFGPHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYL 63
+TDP + FGP PG+ ++P+ D +ALEA + PN AF+VEPIQGEAG ++P GY
Sbjct: 153 STDPDARGGFGPFTPGFRVVPFGDAEALEAAI--TPNTVAFLVEPIQGEAGVIIPPAGYF 210
Query: 64 KKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLA 123
+VR LC+ NV I DE+QTGLGRTGKLLA +E + D+ ++GKALSGG YP+SAVL+
Sbjct: 211 TRVRELCTANNVTLILDEIQTGLGRTGKLLAEEHEGIEADVTLIGKALSGGFYPVSAVLS 270
Query: 124 DDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSS-PAN 182
+ EV+G L PG HGST+GGNPLAC +A AL V+ EE MIENA +MG F L S +N
Sbjct: 271 NSEVLGVLKPGQHGSTFGGNPLACAVARAALKVLTEEGMIENAAEMGAYFLEGLRSIRSN 330
Query: 183 KSKA----------SFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPISNN 232
+ + +GG ++ C +K+ GL+ K ++
Sbjct: 331 IVREVRGRGLMLAVELEPEAGGARQ-----------------YCEALKERGLLAKDTHDH 373
Query: 233 IIRLSPALNITEQELREGLDIIINTINT 260
IRL+P L IT +++ L+ I +
Sbjct: 374 TIRLAPPLVITREQVDWALEQIAKVLAH 401
>gnl|CDD|99735 cd00610, OAT_like, Acetyl ornithine aminotransferase family. This
family belongs to pyridoxal phosphate (PLP)-dependent
aspartate aminotransferase superfamily (fold I). The
major groups in this CD correspond to ornithine
aminotransferase, acetylornithine aminotransferase,
alanine-glyoxylate aminotransferase, dialkylglycine
decarboxylase, 4-aminobutyrate aminotransferase,
beta-alanine-pyruvate aminotransferase,
adenosylmethionine-8-amino-7-oxononanoate
aminotransferase, and glutamate-1-semialdehyde
2,1-aminomutase. All the enzymes belonging to this
family act on basic amino acids and their derivatives
are involved in transamination or decarboxylation.
Length = 413
Score = 260 bits (667), Expect = 2e-85
Identities = 110/277 (39%), Positives = 146/277 (52%), Gaps = 34/277 (12%)
Query: 3 ITTDPTSYNEFGPHMPGYNIIPYN-----------DVDALEAKLKSNP-NICAFMVEPIQ 50
+T FGP +PG +PY D++ALE L+ +P + A +VEPIQ
Sbjct: 142 LTGSKKYRGGFGPLLPGVLHVPYPYRYRPPAELADDLEALEEALEEHPEEVAAVIVEPIQ 201
Query: 51 GEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKA 110
GE G +VP GYLK +R LC ++ +L IADEVQTG GRTGK+ A + V PDIV LGK
Sbjct: 202 GEGGVIVPPPGYLKALRELCRKHGILLIADEVQTGFGRTGKMFAFEHFGVEPDIVTLGKG 261
Query: 111 LSGGLYPISAVLADDEVMGTLV--PGTHGSTYGGNPLACKLAMTALDVILEENMIENAYK 168
L GGL P+ AVL +E+M PG HG T+GGNPLAC A+ L+V+ EE ++ENA +
Sbjct: 262 LGGGL-PLGAVLGREEIMDAFPAGPGLHGGTFGGNPLACAAALAVLEVLEEEGLLENAAE 320
Query: 169 MGEIFRSELSSPANKSK-----------ASFKLSSGGLKKSINTLILSVSAILEVYDVCI 217
+GE R L A K +L K +
Sbjct: 321 LGEYLRERLRELAEKHPLVGDVRGRGLMIGIELVKDRATKP--------PDKELAAKIIK 372
Query: 218 KMKDAGLVTKPISNNIIRLSPALNITEQELREGLDII 254
+ GL+ +P N+IRL P L ITE+E+ EGLD +
Sbjct: 373 AALERGLLLRPSGGNVIRLLPPLIITEEEIDEGLDAL 409
>gnl|CDD|179736 PRK04073, rocD, ornithine--oxo-acid transaminase; Provisional.
Length = 396
Score = 256 bits (657), Expect = 3e-84
Identities = 110/252 (43%), Positives = 157/252 (62%), Gaps = 11/252 (4%)
Query: 3 ITTDPTSYNEFGPHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGY 62
++++ FGP +PG IPY D++AL+A + PN AF+VEPIQGEAG +P +G+
Sbjct: 151 LSSEEEYKRGFGPMLPGIKKIPYGDLEALKAAI--TPNTAAFLVEPIQGEAGINIPPEGF 208
Query: 63 LKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVL 122
LK R LC + NVLFIADE+QTGLGRTGKL A +++V PD+ ILGKAL GG++PIS V
Sbjct: 209 LKAARELCKEENVLFIADEIQTGLGRTGKLFACDWDNVTPDMYILGKALGGGVFPISCVA 268
Query: 123 ADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSSPAN 182
A+ +++G PG+HGST+GGNPLAC +++ AL+V+ EE + E + ++GE F+ +L N
Sbjct: 269 ANRDILGVFTPGSHGSTFGGNPLACAVSIAALEVLEEEKLPERSLELGEYFKEQLKEIDN 328
Query: 183 KSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNI 242
K G L + V C +K+ GL+ K +IR +P L I
Sbjct: 329 P---MIKEVRG------RGLFIGVELNEPARPYCEALKEEGLLCKETHETVIRFAPPLVI 379
Query: 243 TEQELREGLDII 254
T++EL + I
Sbjct: 380 TKEELDWAFEKI 391
>gnl|CDD|235056 PRK02627, PRK02627, acetylornithine aminotransferase; Provisional.
Length = 396
Score = 252 bits (647), Expect = 1e-82
Identities = 97/251 (38%), Positives = 145/251 (57%), Gaps = 12/251 (4%)
Query: 13 FGPHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQ 72
F P + G+ +P+ND++AL+A + A M+EPIQGE G D YL+ +R LC +
Sbjct: 157 FEPLVEGFIYVPFNDIEALKAAI--TDKTAAVMLEPIQGEGGVNPADKEYLQALRELCDE 214
Query: 73 YNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLV 132
+L I DEVQTG+GRTGKL A + + PDI+ L K L GG+ PI AVLA ++V
Sbjct: 215 NGILLILDEVQTGMGRTGKLFAYQHYGIEPDIMTLAKGLGGGV-PIGAVLAKEKVADVFT 273
Query: 133 PGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSSPANKSKASFKLSS 192
PG HGST+GGNPLAC A+ +++I EE ++ENA ++GE R++L K K
Sbjct: 274 PGDHGSTFGGNPLACAAALAVIEIIEEEGLLENAAEVGEYLRAKLRELLEK-YPGIKEVR 332
Query: 193 G-GLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGL 251
G GL + + L A ++ K + GL+ +N++RL P L I+++E+ E +
Sbjct: 333 GLGL---MIGIELDRPAA----EIVKKALEKGLLINVTGDNVLRLLPPLIISKEEIDEAV 385
Query: 252 DIIINTINTMA 262
D + + +
Sbjct: 386 DRLEEVLKELL 396
>gnl|CDD|179270 PRK01278, argD, acetylornithine transaminase protein; Provisional.
Length = 389
Score = 230 bits (589), Expect = 5e-74
Identities = 97/256 (37%), Positives = 146/256 (57%), Gaps = 12/256 (4%)
Query: 1 MLITTDPTSYNE-FGPHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPD 59
+ Y E FGP +PG++ +P+ D++AL+A + PN A ++EPIQGE G
Sbjct: 137 TIAAGGQEKYLEGFGPLVPGFDQVPFGDIEALKAAI--TPNTAAILIEPIQGEGGIRPAP 194
Query: 60 DGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPIS 119
D +LK +R LC + +L I DEVQ G+GRTGKL A + V PDI+ + K + GG +P+
Sbjct: 195 DEFLKGLRQLCDENGLLLIFDEVQCGMGRTGKLFAHEWAGVTPDIMAVAKGIGGG-FPLG 253
Query: 120 AVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSS 179
A LA +E + PGTHGSTYGGNPLA + LDVIL ++N +MG + +L
Sbjct: 254 ACLATEEAAKGMTPGTHGSTYGGNPLAMAVGNAVLDVILAPGFLDNVQRMGLYLKQKLEG 313
Query: 180 PANKSKASFKLSSG-GLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPISNNIIRLSP 238
++ + G G L+L + ++ D+ ++D GL+T +N++RL P
Sbjct: 314 LVDRFPDVIEEVRGKG-------LLLGLKCVVPNRDLVQALRDEGLLTVGAGDNVVRLLP 366
Query: 239 ALNITEQELREGLDII 254
L ITE+E+ E L+ +
Sbjct: 367 PLIITEEEIDEALERL 382
>gnl|CDD|201078 pfam00202, Aminotran_3, Aminotransferase class-III.
Length = 338
Score = 227 bits (581), Expect = 2e-73
Identities = 87/190 (45%), Positives = 115/190 (60%), Gaps = 13/190 (6%)
Query: 1 MLITTDPTSYNEFGPHMPGYNIIPYNDVDALEA------------KLKSNPNICAFMVEP 48
+ +T FGP +PG +PY D++A E K + NI A +VEP
Sbjct: 126 LSVTGSSGYKKGFGPSLPGVYFLPYPDLEAAEEELACADEALRLIKAVHDDNIAAVIVEP 185
Query: 49 IQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILG 108
IQGE G V P G+L +R +C ++ VL IADEVQTG GRTGKL A + V PDI+ L
Sbjct: 186 IQGEGGVVPPPPGFLAGLREICKKHGVLLIADEVQTGFGRTGKLFACEHYGVTPDIMTLA 245
Query: 109 KALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYK 168
KAL+GG P+SAVLA E+M PG+HG T+GGNPLAC A+ LD+I +EN+++NA +
Sbjct: 246 KALTGG-LPLSAVLATAEIMQAFHPGSHGGTFGGNPLACAAALAVLDIIEDENLLQNAQE 304
Query: 169 MGEIFRSELS 178
G+ R L
Sbjct: 305 KGDYLRKGLL 314
>gnl|CDD|233098 TIGR00707, argD, transaminase, acetylornithine/succinylornithine
family. This family of proteins, for which ornithine
aminotransferases form an outgroup, consists mostly of
proteins designated acetylornithine aminotransferase.
However, the two very closely related members from E.
coli are assigned different enzymatic activities. One is
acetylornithine aminotransferase (EC 2.6.1.11), ArgD, an
enzyme of arginine biosynthesis, while another is
succinylornithine aminotransferase, an enzyme of the
arginine succinyltransferase pathway, an
ammonia-generating pathway of arginine catabolism (See
MEDLINE:98361920). Members of this family may also act
on ornithine, like ornithine aminotransferase (EC
2.6.1.13) (see MEDLINE:90337349) and on
succinyldiaminopimelate, like
N-succinyldiaminopmelate-aminotransferase (EC 2.6.1.17,
DapC, an enzyme of lysine biosynthesis) (see
MEDLINE:99175097).
Length = 379
Score = 213 bits (545), Expect = 1e-67
Identities = 89/242 (36%), Positives = 133/242 (54%), Gaps = 11/242 (4%)
Query: 13 FGPHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQ 72
F P +PG++ PYND+++L+ + A +VEPIQGE G +LK +R +C
Sbjct: 145 FEPLVPGFSYAPYNDIESLKKAIDDE--TAAVIVEPIQGEGGVNPASAEFLKALREICKD 202
Query: 73 YNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLV 132
+ L I DEVQTG+GRTGK A + + PDI+ L K L GG+ PI A LA +EV
Sbjct: 203 KDALLIFDEVQTGIGRTGKFFAYEHYGIEPDIITLAKGLGGGV-PIGATLAKEEVAEAFT 261
Query: 133 PGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSSPANKSKASFKLSS 192
PG HGST+GGNPLAC A+ L+VI +E ++EN + G+ F+ L K+ + ++
Sbjct: 262 PGDHGSTFGGNPLACAAALAVLEVIEKERLLENVKEKGDYFKERLEE-LGKNYPNKEVRG 320
Query: 193 GGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLD 252
G L+L + D+ K + GL+ ++R P L IT++E+ E +
Sbjct: 321 KG-------LMLGIELEAPCKDIVKKALEKGLLVNCAGPKVLRFLPPLIITKEEIDEAVS 373
Query: 253 II 254
+
Sbjct: 374 AL 375
>gnl|CDD|223238 COG0160, GabT, 4-aminobutyrate aminotransferase and related
aminotransferases [Amino acid transport and metabolism].
Length = 447
Score = 197 bits (504), Expect = 1e-60
Identities = 99/285 (34%), Positives = 141/285 (49%), Gaps = 62/285 (21%)
Query: 13 FGPHMPGYNIIPYND--------------------VDALEAKLKSNP-NICAFMVEPIQG 51
FGP PG +PY + ++ L+ P + A ++EPIQG
Sbjct: 174 FGPLPPGVYHVPYPNPYRCPFGIGGEECGDDALEYIERALFDLEVGPEEVAAIIIEPIQG 233
Query: 52 EAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKAL 111
E G +VP G+LK +R LC ++ +L IADEVQTG GRTGK+ A + V PDIV L K+L
Sbjct: 234 EGGIIVPPKGFLKALRKLCREHGILLIADEVQTGFGRTGKMFAFEHFGVEPDIVTLAKSL 293
Query: 112 SGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGE 171
GGL P+SAV+ E+M PG HG T+GGNP+AC A+ LDVI EEN++E A ++GE
Sbjct: 294 GGGL-PLSAVVGRAEIM-DWPPGGHGGTFGGNPVACAAALAVLDVIEEENLLERAAELGE 351
Query: 172 IFRSELSSPA--------------------NKSKASFKLSSGGLKKSINTLILSVSAILE 211
R L K + + + + K
Sbjct: 352 YLRDRLEELQEKHPLIGDVRGLGLMIGVELVKDRDTKEPDAELAAK-------------- 397
Query: 212 VYDVCIKMKDAGLV--TKPISNNIIRLSPALNITEQELREGLDII 254
+ + + GL+ T N++R+ P L I+++EL EGLDI+
Sbjct: 398 ---IVARAFERGLLLLTCGPHGNVLRILPPLTISDEELDEGLDIL 439
>gnl|CDD|235112 PRK03244, argD, acetylornithine aminotransferase; Provisional.
Length = 398
Score = 194 bits (495), Expect = 6e-60
Identities = 94/252 (37%), Positives = 136/252 (53%), Gaps = 11/252 (4%)
Query: 13 FGPHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQ 72
F P G +PY DVDAL A + + + A +EPIQGEAG V P GYL R + +
Sbjct: 158 FEPLPGGVEHVPYGDVDALAAAV--DDDTAAVFLEPIQGEAGVVPPPAGYLAAAREITDR 215
Query: 73 YNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLV 132
+ L + DEVQTG+GRTG A ++ V PD+V L K L GGL PI A LA L
Sbjct: 216 HGALLVLDEVQTGIGRTGAWFAHQHDGVTPDVVTLAKGLGGGL-PIGACLAFGPAADLLT 274
Query: 133 PGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSSPANKSKASFKLSS 192
PG HGST+GGNP+AC A+ LD I E ++ENA ++GE R+ + + + +
Sbjct: 275 PGLHGSTFGGNPVACAAALAVLDTIASEGLLENAERLGEQLRAGIEALGHPLVDHVRGR- 333
Query: 193 GGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLD 252
GL I L V+ +E ++AG + ++ ++IRL+P L IT+ ++ +
Sbjct: 334 -GLLLGI-VLTAPVAKAVEAA-----AREAGFLVNAVAPDVIRLAPPLIITDAQVDAFVA 386
Query: 253 IIINTINTMAAK 264
+ ++ AA
Sbjct: 387 ALPAILDAAAAA 398
>gnl|CDD|179933 PRK05093, argD, bifunctional
N-succinyldiaminopimelate-
aminotransferase/acetylornithine transaminase protein;
Reviewed.
Length = 403
Score = 193 bits (494), Expect = 9e-60
Identities = 89/246 (36%), Positives = 128/246 (52%), Gaps = 18/246 (7%)
Query: 13 FGPHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQ 72
FGP +P+ND+ A++A + + + CA +VEPIQGE G + +L+ +R LC Q
Sbjct: 159 FGPKPADITHVPFNDLAAVKAVI--DDHTCAVVVEPIQGEGGVIPATPEFLQGLRELCDQ 216
Query: 73 YNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLV 132
+N L I DEVQTG+GRTG L A + V PDI+ KAL GG +PI A+L E+
Sbjct: 217 HNALLIFDEVQTGMGRTGDLFAYMHYGVTPDILTSAKALGGG-FPIGAMLTTAEIASHFK 275
Query: 133 PGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSSPANKSKASFKLSS 192
GTHGSTYGGNPLAC +A D+I ++E + F L K + + S
Sbjct: 276 VGTHGSTYGGNPLACAVAEAVFDIINTPEVLEGVKARRQRFVDGL----QKINQKYGVFS 331
Query: 193 GGLKKSINTLILSVSAIL-EVY-----DVCIKMKDAGLVTKPISNNIIRLSPALNITEQE 246
I + L + A L Y D + G++ +++R +P+L I E +
Sbjct: 332 -----EIRGMGLLIGAELKPQYKGRARDFLNAAAEEGVMVLVAGPDVLRFAPSLVIEEAD 386
Query: 247 LREGLD 252
+ EGL
Sbjct: 387 IDEGLA 392
>gnl|CDD|235599 PRK05769, PRK05769, 4-aminobutyrate aminotransferase; Provisional.
Length = 441
Score = 192 bits (491), Expect = 7e-59
Identities = 99/278 (35%), Positives = 141/278 (50%), Gaps = 42/278 (15%)
Query: 13 FGPHMPGYNIIPYND------------------VDALEAKLKSN---PN-ICAFMVEPIQ 50
F P MPG +PY + +D +E L P + A +VEPIQ
Sbjct: 172 FFPLMPGVIHVPYPNPYRNPWGIENPEECGNAVLDFIEDYLFKKLVPPEEVAAIIVEPIQ 231
Query: 51 GEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKA 110
GE G VVP + K++R L +Y +L I DEVQTG+GRTGK+ AI + V PDI+ L KA
Sbjct: 232 GEGGYVVPPKNFFKELRKLADKYGILLIDDEVQTGMGRTGKMFAIEHFGVEPDIITLAKA 291
Query: 111 LSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMG 170
++GGL P+ AV+ E+M L PG+H +T+GGNP+A A+ L+ + EE ++ENA K+G
Sbjct: 292 IAGGL-PLGAVIGRAELM-FLPPGSHANTFGGNPVAAAAALATLEEL-EEGLLENAQKLG 348
Query: 171 EIFRSELSSPANKSKASFKLSSGGL---------KKSINTLILSVSAILEVYDVCIKMKD 221
E R EL K + + GL +K + + V +
Sbjct: 349 EYLRKELKELKEKYEFIGDVRGLGLMIGVELVKDRKEPDPKLRD--------KVLYEAFK 400
Query: 222 AGLVTKPISNNIIRLSPALNITEQELREGLDIIINTIN 259
GL+ + IR+ P L ITE+E GL+I+ I
Sbjct: 401 RGLLLLGAGKSAIRIIPPLIITEEEADIGLEILEEAIK 438
>gnl|CDD|223239 COG0161, BioA, Adenosylmethionine-8-amino-7-oxononanoate
aminotransferase [Coenzyme metabolism].
Length = 449
Score = 192 bits (490), Expect = 1e-58
Identities = 87/252 (34%), Positives = 127/252 (50%), Gaps = 19/252 (7%)
Query: 27 DVDALEAKLKSN--PNICAFMVEPI-QGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQ 83
D LEA + + I AF+VEP+ G G +VP GYLK+VR +C +Y +L IADEV
Sbjct: 199 AADELEALILEHGPETIAAFIVEPVVGGAGGMLVPPPGYLKRVREICDKYGILLIADEVA 258
Query: 84 TGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPG-----THGS 138
TG GRTGK+ A + + PDI+ L K L+GG P+SAVL D + G HG
Sbjct: 259 TGFGRTGKMFACEHAGIVPDILCLAKGLTGGYLPLSAVLTSDRIYEAFSDGDAGAFMHGH 318
Query: 139 TYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSSPANKSKASFKLSSG----- 193
TY GNPLAC A+ LD++ EE+++E ++G ++ L A G
Sbjct: 319 TYSGNPLACAAALANLDILEEEDLLERVAEIGAYLQAGL-QAALADHPLVGDVRGLGLIG 377
Query: 194 --GLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGL 251
L T + + V + GL+ +P+ ++I L P L IT +E+ E +
Sbjct: 378 AIELVADKATKTPFEARVGAR--VRAAALERGLLIRPL-GDVIYLMPPLIITREEIDELV 434
Query: 252 DIIINTINTMAA 263
D + ++ A
Sbjct: 435 DALREALDETLA 446
>gnl|CDD|132290 TIGR03246, arg_catab_astC, succinylornithine transaminase family.
Members of the seed alignment for this protein family
are the enzyme succinylornithine transaminase (EC
2.6.1.81), which catalyzes the third of five steps in
arginine succinyltransferase (AST) pathway, an
ammonia-releasing pathway of arginine degradation. All
seed alignment sequences are found within arginine
succinyltransferase operons, and all proteins that score
above 820.0 bits should function as succinylornithine
transaminase. However, a number of sequences extremely
closely related in sequence, found in different genomic
contexts, are likely to act in different biological
processes and may act on different substrates. This
model is desigated subfamily rather than equivalog,
pending further consideration, for this reason [Energy
metabolism, Amino acids and amines].
Length = 397
Score = 185 bits (472), Expect = 2e-56
Identities = 90/246 (36%), Positives = 131/246 (53%), Gaps = 18/246 (7%)
Query: 13 FGPHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQ 72
F P G PYND+ A +A + + CA +VEPIQGE G V D +LK +R LC +
Sbjct: 154 FAPLPGGIKHAPYNDLAAAKALI--SDKTCAVIVEPIQGEGGVVPADPAFLKGLRELCDR 211
Query: 73 YNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLV 132
+N L I DEVQTG+GRTG+L A + V PDI+ KAL GG +PI A+L E+ L
Sbjct: 212 HNALLIFDEVQTGVGRTGELYAYMHYGVTPDILTSAKALGGG-FPIGAMLTTTEIAAHLK 270
Query: 133 PGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSSPANKSKASFKLSS 192
GTHG+TYGGNPLAC +A LD++ ++ + ++F L K A + + S
Sbjct: 271 VGTHGTTYGGNPLACAVAGKVLDLVNTPELLAGVKQRHDLFVDGL----EKINARYNVFS 326
Query: 193 GGLKKSINTLILSVSAIL------EVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQE 246
I L + A+L + + G++ N++R +P+L I++ +
Sbjct: 327 -----EIRGKGLLIGAVLTEAYQGKAKQFVNAAAEEGVIALIAGPNVVRFAPSLVISDDD 381
Query: 247 LREGLD 252
+ EGL
Sbjct: 382 IDEGLA 387
>gnl|CDD|179505 PRK02936, argD, acetylornithine aminotransferase; Provisional.
Length = 377
Score = 180 bits (458), Expect = 1e-54
Identities = 86/248 (34%), Positives = 137/248 (55%), Gaps = 14/248 (5%)
Query: 13 FGPHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQ 72
FGP +PG+ +P+ND+ AL+ + N + A M+E +QGE G + D +L++V+ LC +
Sbjct: 142 FGPLLPGFTHVPFNDIKALKEVM--NEEVAAVMLEVVQGEGGVIPADPAFLQEVQTLCKK 199
Query: 73 YNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLV 132
+ L I DEVQTG+GRTG L A + PDIV + K L G+ P+ A++ E+
Sbjct: 200 FGALLIIDEVQTGIGRTGTLFAYEQFGLDPDIVTVAKGLGNGI-PVGAMIGKKELGTAFG 258
Query: 133 PGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSSPANKSKASFKLSS 192
PG+HGST+GGNPLA A L VI + + +E + GE F +L +L
Sbjct: 259 PGSHGSTFGGNPLAMAAAKEVLQVIKQPSFLEEVQEKGEYFLQKLQE---------ELEH 309
Query: 193 GGLKKSI--NTLILSVSAILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREG 250
K+I L++ + EV V ++++ GL+ N+IRL P L +T++EL +
Sbjct: 310 LECVKNIRGKGLMIGIECTEEVAPVIEQLREEGLLVLSAGPNVIRLLPPLVVTKEELDQA 369
Query: 251 LDIIINTI 258
+ ++ +
Sbjct: 370 VYLLKKVL 377
>gnl|CDD|183175 PRK11522, PRK11522, putrescine--2-oxoglutarate aminotransferase;
Provisional.
Length = 459
Score = 179 bits (455), Expect = 2e-53
Identities = 88/261 (33%), Positives = 142/261 (54%), Gaps = 14/261 (5%)
Query: 13 FGPHMPGYNIIPYNDVDALEAKL----KSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRA 68
F P +PG+ +P+ +++A+ L K+ ++ A ++EPIQGE G ++P +GYL VR
Sbjct: 200 FMPLLPGFRHVPFGNIEAMRTALSECKKTGDDVAAVILEPIQGEGGVILPPEGYLTAVRK 259
Query: 69 LCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVM 128
LC ++ L I DEVQTG+GRTGK+ A +E+V+PDI+ L KAL GG+ PI A +A +EV
Sbjct: 260 LCDEFGALLILDEVQTGMGRTGKMFACEHENVQPDILCLAKALGGGVMPIGATIATEEVF 319
Query: 129 GTLV--PGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSSPANKSKA 186
L P H +T+GGNPLAC A+ ++V+LE+N+ A + G+ A +
Sbjct: 320 SVLFDNPFLHTTTFGGNPLACAAALATINVLLEQNLPAQAEQKGDYLLDGFRQLAREYPD 379
Query: 187 SFKLSSG-GLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPISNN--IIRLSPALNIT 243
+ + G G+ +I + + Y+ +M ++ NN IR+ P L +T
Sbjct: 380 LVQEARGKGMLMAIEFVDNEIG-----YNFASEMFRQRVLVAGTLNNAKTIRIEPPLTLT 434
Query: 244 EQELREGLDIIINTINTMAAK 264
++ + L + M
Sbjct: 435 IEQCEQVLKAARKALAAMRVS 455
>gnl|CDD|181234 PRK08117, PRK08117, 4-aminobutyrate aminotransferase; Provisional.
Length = 433
Score = 174 bits (442), Expect = 8e-52
Identities = 87/247 (35%), Positives = 137/247 (55%), Gaps = 14/247 (5%)
Query: 26 NDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTG 85
D+++L + + A ++EP+ GE G +VP +LKK+R +C ++ +L I DEVQTG
Sbjct: 193 RDLESLFKHQVTPEEVAAVIIEPVLGEGGYIVPPKSFLKKLREICDRHGILLIFDEVQTG 252
Query: 86 LGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPL 145
GRTG+ A V PDI+ + K ++ GL P+SAV+A E+M G+HG+T+GGNP+
Sbjct: 253 FGRTGEWFAAQTFGVVPDIMTIAKGIASGL-PLSAVVASKELMEQWPLGSHGTTFGGNPV 311
Query: 146 ACKLAMTALDVILEENMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILS 205
AC A+ L+VI EE +++NA +MG L K + GL I I+
Sbjct: 312 ACAAALATLEVIKEEKLLDNANEMGAYALERLEVLKEKHPVIGDVRGIGLMIGIE--IVD 369
Query: 206 V------SAILEVYDVCIKMKDAGLVTKPISN--NIIRLSPALNITEQELREGLDIIINT 257
A+ ++ D C+ + GL+ N N++R+ P L +T++E+ EGLDI+
Sbjct: 370 PDGEPDGDAVEKILDKCL---EKGLLFYLCGNAGNVLRMIPPLTVTKEEIDEGLDILDEA 426
Query: 258 INTMAAK 264
+ AK
Sbjct: 427 LTEYEAK 433
>gnl|CDD|233000 TIGR00508, bioA, adenosylmethionine-8-amino-7-oxononanoate
transaminase. All members of the seed alignment have
been demonstrated experimentally to act as EC 2.6.1.62,
an enzyme in the biotin biosynthetic pathway. Alternate
names include 7,8-diaminopelargonic acid
aminotransferase, DAPA aminotransferase, and
adenosylmethionine-8-amino-7-oxononanoate
aminotransferase. The gene symbol is bioA in E. coli and
BIO3 in S. cerevisiae [Biosynthesis of cofactors,
prosthetic groups, and carriers, Biotin].
Length = 417
Score = 173 bits (440), Expect = 1e-51
Identities = 83/245 (33%), Positives = 122/245 (49%), Gaps = 24/245 (9%)
Query: 29 DALEAKLKSNPN-ICAFMVEPI-QGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGL 86
ALEA L+ + + I AF+VEP+ QG G YL+K+R LC +Y VL IADE+ TG
Sbjct: 183 AALEALLEEHADEIAAFIVEPLVQGAGGMRFYPPEYLRKLRELCDEYGVLLIADEIATGF 242
Query: 87 GRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEV----MGTLVPGT--HGSTY 140
GRTGKL A + V PDI+ L K L+GG P++A L DE+ HG TY
Sbjct: 243 GRTGKLFACEHAGVTPDILCLSKGLTGGYLPLAATLTTDEIYEAFYSDDEGKAFMHGHTY 302
Query: 141 GGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSSPANKSKASFKLSSGG------ 194
GNPLAC A+ +LD++ EE+ +E ++ R+ L +P + G
Sbjct: 303 TGNPLACAAALASLDLLEEEDWLEQVARIEAQLRAGL-APLRDHPGVADVRVLGAIGAVE 361
Query: 195 LKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDII 254
L + + + + G++ +P+ N+I L P IT++EL + I
Sbjct: 362 LVRDVEP--------YIGAKIQQFFLERGVLLRPL-GNVIYLMPPYIITDEELEKLTAAI 412
Query: 255 INTIN 259
I+
Sbjct: 413 KEAID 417
>gnl|CDD|177748 PLN00144, PLN00144, acetylornithine transaminase.
Length = 382
Score = 169 bits (431), Expect = 1e-50
Identities = 89/255 (34%), Positives = 128/255 (50%), Gaps = 20/255 (7%)
Query: 13 FGPHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQ 72
F P MPG + Y +++A ++ A VEP+QGE G +L+ +RALC +
Sbjct: 141 FEPLMPGVTFVEYGNLEAARKLIQKG-KTAAVFVEPVQGEGGIYPATKEFLQGLRALCDE 199
Query: 73 YNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLV 132
L + DEVQ GLGRTG L A V PDI+ L K L+GGL PI AVL ++V +
Sbjct: 200 AGALLVFDEVQCGLGRTGYLWAHEAYGVEPDIMTLAKPLAGGL-PIGAVLVTEKVASAIN 258
Query: 133 PGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSSPANKSKASFKLSS 192
PG HGST+ G PL C A+ LD I + + + K GE R L KL
Sbjct: 259 PGDHGSTFAGGPLVCNAALAVLDKISKPGFLASVAKKGEYLRELLRR---------KLGG 309
Query: 193 GGLKKSINTLILSVSAILEV-----YDVCIKMKDAGLVTKPISN-NIIRLSPALNITEQE 246
K + + L V L+V D C +D+GL+ +++RL P L I+E E
Sbjct: 310 NPHVKEVRGVGLLVGIQLDVPAGPLVDAC---RDSGLLVLTAGKGDVVRLVPPLVISEAE 366
Query: 247 LREGLDIIINTINTM 261
L + ++I+ + + +
Sbjct: 367 LEQAVEILADCLPAL 381
>gnl|CDD|183486 PRK12381, PRK12381, bifunctional succinylornithine
transaminase/acetylornithine transaminase; Provisional.
Length = 406
Score = 169 bits (431), Expect = 2e-50
Identities = 92/253 (36%), Positives = 134/253 (52%), Gaps = 20/253 (7%)
Query: 7 PTSYNEFGPHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKV 66
P +F P P YND+++ A + + CA +VEPIQGE G + D +L+ +
Sbjct: 152 PKYSQDFAPLPPDIRHAAYNDLNSASALI--DDQTCAVIVEPIQGEGGVIPADKAFLQGL 209
Query: 67 RALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDE 126
R LC ++N L I DEVQTG+GRTG+L A + V PD++ KAL GG +PI A+L ++
Sbjct: 210 RELCDRHNALLIFDEVQTGVGRTGELYAYMHYGVTPDVLTTAKALGGG-FPIGAMLTTEK 268
Query: 127 VMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSSPANKSKA 186
+ GTHG+TYGGNPLA +A L++I M+ + + F L N A
Sbjct: 269 CASVMTVGTHGTTYGGNPLASAVAGKVLELINTPEMLNGVKQRHDWFVERL----NTINA 324
Query: 187 SFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKD-------AGLVTKPISNNIIRLSPA 239
+ GL I L L + +L + K K AG++ N++R +PA
Sbjct: 325 RY-----GLFSEIRGLGLLIGCVLNA-EYAGKAKQISQEAAKAGVMVLIAGPNVVRFAPA 378
Query: 240 LNITEQELREGLD 252
LNI+E+E+ GLD
Sbjct: 379 LNISEEEITTGLD 391
>gnl|CDD|181401 PRK08360, PRK08360, 4-aminobutyrate aminotransferase; Provisional.
Length = 443
Score = 165 bits (420), Expect = 2e-48
Identities = 83/224 (37%), Positives = 124/224 (55%), Gaps = 18/224 (8%)
Query: 41 ICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDV 100
+ A EPIQG+AG +VP + Y KK++ + ++ +L + DEVQ+GLGRTGK AI + V
Sbjct: 205 VAALFAEPIQGDAGMIVPPEDYFKKLKKILDEHGILLVVDEVQSGLGRTGKWFAIEHFGV 264
Query: 101 RPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEE 160
PDI+ LGK L GGL PISA + E+M +L P H T GNP+A A+ ++ I E+
Sbjct: 265 EPDIITLGKPLGGGL-PISATIGRAEIMDSLPPLAHAFTLSGNPVASAAALAVIEEIEEK 323
Query: 161 NMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVS----------AIL 210
N+++ A K+G + L + K +L G + I L++ V A
Sbjct: 324 NLLKRAEKLGNYTKKRLE----EMKKKHELI--GDVRGIG-LMIGVDLVKDRETKERAYE 376
Query: 211 EVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDII 254
E V + + GL+ S N++R+ P L I ++ L EGLDI+
Sbjct: 377 EAAKVVWRAWELGLIVTFFSGNVLRIQPPLTIEKEVLDEGLDIL 420
>gnl|CDD|132415 TIGR03372, putres_am_tran, putrescine aminotransferase. Members of
this family are putrescine aminotransferase, as found in
Escherichia coli, Erwinia carotovora subsp. atroseptica,
and closely related species. This pyridoxal phosphate
enzyme, as characterized in E. coli, can act also on
cadaverine and, more weakly, spermidine [Central
intermediary metabolism, Polyamine biosynthesis].
Length = 442
Score = 163 bits (413), Expect = 2e-47
Identities = 74/176 (42%), Positives = 109/176 (61%), Gaps = 6/176 (3%)
Query: 4 TTDPTSYNEFGPHMPGYNIIPYNDVDALEAKL----KSNPNICAFMVEPIQGEAGAVVPD 59
T P F P +PG++ + + D++A+ L K+ ++ A ++EPIQGE G ++P
Sbjct: 184 TAKPAFRKPFMPLLPGFHHVAFGDIEAMLKALNECKKTGDDVAAIILEPIQGEGGVILPP 243
Query: 60 DGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPIS 119
+GYL VRALC ++ L I DEVQTG+GRTGK+ A +E V+PDI+ L KAL GG+ PI
Sbjct: 244 EGYLPAVRALCDEFGALLILDEVQTGMGRTGKMFACEHEGVQPDILCLAKALGGGVMPIG 303
Query: 120 AVLADDEVMGTLV--PGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIF 173
A +A + V L P H +T+GGNPLAC A+ ++ +LE+N+ A G+
Sbjct: 304 ATIATEAVFSVLFDNPFLHTTTFGGNPLACAAALATINELLEKNLPAQAAIKGDFL 359
>gnl|CDD|179868 PRK04612, argD, acetylornithine transaminase protein; Provisional.
Length = 408
Score = 158 bits (400), Expect = 7e-46
Identities = 95/255 (37%), Positives = 137/255 (53%), Gaps = 19/255 (7%)
Query: 4 TTDPTSYNEFGPHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYL 63
T P + P G+ + +NDV+ALEA + ++ A M+EPIQGE G + G+L
Sbjct: 152 TAQPKYQEGYEPLPGGFRYVDFNDVEALEAAMAGG-DVAAVMLEPIQGEGGVMPAAPGFL 210
Query: 64 KKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLA 123
+VRALC Q++ L + DE+Q G+GRTG L A E V PDIV L KAL GG +PI A+LA
Sbjct: 211 ARVRALCDQHDALLVLDEIQCGMGRTGTLFAHWQEQVTPDIVTLAKALGGG-FPIGAMLA 269
Query: 124 DDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSSPANK 183
+V T+ G HG+T+GGNPLA +A AL + + N + R+ L + N
Sbjct: 270 GPKVAETMQFGAHGTTFGGNPLAAAVARVALRKLASPQIAANVARQSAALRAGLEA-LNA 328
Query: 184 SKASFKLSSG-GLKKSINTLILS------VSAILEVYDVCIKMKDAGLVTKPISNNIIRL 236
F G GL + +L+ AIL++ + GL+ +++R
Sbjct: 329 EFGVFAQVRGRGL---MLGAVLAPAHAGQAGAILDL------AAEHGLLLLQAGPDVLRF 379
Query: 237 SPALNITEQELREGL 251
PALN+T+ EL +GL
Sbjct: 380 VPALNLTDAELADGL 394
>gnl|CDD|179803 PRK04260, PRK04260, acetylornithine aminotransferase; Provisional.
Length = 375
Score = 152 bits (386), Expect = 4e-44
Identities = 81/243 (33%), Positives = 134/243 (55%), Gaps = 12/243 (4%)
Query: 13 FGPHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQ 72
FG +P ++ +ND+++++A + N N A M+E +QGE+G + D ++K + C +
Sbjct: 140 FGDGVPHFSYAIFNDLNSVKALV--NKNTAAVMLELVQGESGVLPADKDFVKALADYCQE 197
Query: 73 YNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLV 132
+L I DEVQTG+GRTGKL A + + PDI L K L+ G+ P+ A+LA + G
Sbjct: 198 TGILLIVDEVQTGMGRTGKLYAFEHYGIEPDIFTLAKGLANGV-PVGAMLAKSSLGGAFG 256
Query: 133 PGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSEL-SSPANKSKASFKLS 191
G+HGST+GGN L+ A LD++L +E A + G + +L + +K + +
Sbjct: 257 YGSHGSTFGGNKLSMAAASATLDIMLTAGFLEQALENGNYLQEQLQKALQDKETVT-TVR 315
Query: 192 SGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGL 251
G I T +S ++E +D GL+ N+IRL P L +T++E+ +G+
Sbjct: 316 GLGYMIGIET-TADLSQLVE------AARDKGLIVLTAGTNVIRLLPPLTLTKEEIEQGI 368
Query: 252 DII 254
I+
Sbjct: 369 AIL 371
>gnl|CDD|236027 PRK07483, PRK07483, hypothetical protein; Provisional.
Length = 443
Score = 149 bits (379), Expect = 2e-42
Identities = 66/156 (42%), Positives = 87/156 (55%), Gaps = 7/156 (4%)
Query: 29 DALEAK-LKSNP-NICAFMVEPIQGE-AGAVVPDDGYLKKVRALCSQYNVLFIADEVQTG 85
D LEAK L+ P + AF+ E + G AGAV P GY K++R +C +Y VL I DEV G
Sbjct: 186 DELEAKILELGPDTVAAFVAETVVGATAGAVPPVPGYFKRIREVCDRYGVLLILDEVMCG 245
Query: 86 LGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGT----HGSTYG 141
+GRTG L A + V PD+V + K L G PI AVLA D + + G+ HG TY
Sbjct: 246 MGRTGTLFACEEDGVAPDLVTIAKGLGAGYQPIGAVLASDRIYDAIADGSGFFQHGHTYL 305
Query: 142 GNPLACKLAMTALDVILEENMIENAYKMGEIFRSEL 177
G+ AC A+ VI E+ ++ N GE R+ L
Sbjct: 306 GHATACAAALAVQRVIAEDGLLANVRARGEQLRARL 341
>gnl|CDD|235656 PRK05964, PRK05964, adenosylmethionine--8-amino-7-oxononanoate
transaminase; Provisional.
Length = 423
Score = 147 bits (374), Expect = 7e-42
Identities = 79/255 (30%), Positives = 118/255 (46%), Gaps = 40/255 (15%)
Query: 28 VDALEAKL-KSNPNICAFMVEP-IQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTG 85
+DALEA L K I AF+VEP +QG G + D YL ++R +C ++ VL I DE+ TG
Sbjct: 186 LDALEALLEKHAGEIAAFIVEPLVQGAGGMLFYDPRYLAELRRICDRHGVLLIFDEIATG 245
Query: 86 LGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEV---------MGTLVPGTH 136
GRTG L A V PDI+ L K L+GG P++A L E+ + H
Sbjct: 246 FGRTGTLFACEQAGVSPDIMCLSKGLTGGYLPLAATLCTAEIFEAFYSDDRAKAFM---H 302
Query: 137 GSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLK 196
+Y NPLAC A +LD+ +E ++E + L F+ L
Sbjct: 303 SPSYTANPLACAAANASLDLFEDEPVLERVAALSAGLAEGL--------EPFR----DLP 350
Query: 197 KSINTLIL-SVSAI-LEVYD-------VCIKMKDAGLVTKPISNNIIRLSPALNITEQEL 247
+ +L ++ A+ L+ + + G++ +P+ N I L P IT +E
Sbjct: 351 GVADVRVLGAIGAVELDRPVLERDGPALRAFALERGVLLRPL-GNTIYLMPPYIITAEE- 408
Query: 248 REGLDIIINTINTMA 262
LD I + I +A
Sbjct: 409 ---LDRITDAIVEVA 420
>gnl|CDD|235685 PRK06058, PRK06058, 4-aminobutyrate aminotransferase; Provisional.
Length = 443
Score = 147 bits (374), Expect = 9e-42
Identities = 79/222 (35%), Positives = 119/222 (53%), Gaps = 11/222 (4%)
Query: 40 NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYED 99
N+ A ++EPIQGE G +VP +G+L + C + V+FIADEVQTG RTG A +E
Sbjct: 219 NLAAVIIEPIQGEGGFIVPAEGFLPALLEWCRENGVVFIADEVQTGFARTGAWFACEHEG 278
Query: 100 VRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILE 159
+ PD++ K ++GGL P+SAV E+M PG G TYGGNP+AC A+ A++ I E
Sbjct: 279 IVPDLITTAKGIAGGL-PLSAVTGRAEIMDAPHPGGLGGTYGGNPVACAAALAAIETIEE 337
Query: 160 ENMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILE-----VYD 214
++++ A ++ + L + A + + G +I L E
Sbjct: 338 DDLVARARQIEALMTDRLRALAAEDDRIGDVRGRGAMIAIE---LVKPGTTEPDAELTKA 394
Query: 215 VCIKMKDAGLV--TKPISNNIIRLSPALNITEQELREGLDII 254
+ AG++ T N+IRL P L I ++ LREGLD++
Sbjct: 395 LAAAAHAAGVIVLTCGTYGNVIRLLPPLVIGDELLREGLDVL 436
>gnl|CDD|180746 PRK06916, PRK06916, adenosylmethionine--8-amino-7-oxononanoate
transaminase; Provisional.
Length = 460
Score = 146 bits (370), Expect = 5e-41
Identities = 89/253 (35%), Positives = 125/253 (49%), Gaps = 35/253 (13%)
Query: 30 ALEAKLK-SNPNICAFMVEP-IQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLG 87
LE LK + I A +VEP +QG G + GYLK +R LC++YNVLFI DEV TG G
Sbjct: 212 ELEELLKEKHEEIAAIIVEPLVQGAGGMITMPKGYLKGLRNLCTKYNVLFITDEVATGFG 271
Query: 88 RTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGT-------HGSTY 140
RTGK+ A +E+V PDI+ GK L+GG PI+ + DE+ HG +Y
Sbjct: 272 RTGKMFACEHENVTPDIMTAGKGLTGGYLPIAITVTTDEIYNAFYGDYEEQKTFFHGHSY 331
Query: 141 GGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSIN 200
GNPL C +A+ L++ + N+IE + E ++L + F L G I
Sbjct: 332 TGNPLGCAVALANLELYEKTNLIEQVARKTEYVATQL-------EDLFALKHVG---DIR 381
Query: 201 TLILSVSAILEV---------------YDVCIKMKDAGLVTKPISNNIIRLSPALNITEQ 245
L L V L VC + ++ G++T+P+ N I+ + P L T
Sbjct: 382 QLGLMVGIELVKNKETKEPFEWTERVGVQVCKRSRELGMLTRPLGNTIVFMPP-LASTID 440
Query: 246 ELREGLDIIINTI 258
EL E L I+ I
Sbjct: 441 ELDEMLRILYKAI 453
>gnl|CDD|129783 TIGR00700, GABAtrnsam, 4-aminobutyrate aminotransferase,
prokaryotic type. This enzyme is a class III
pyridoxal-phosphate-dependent aminotransferase. This
model describes known bacterial examples of the enzyme.
The best archaeal matches are presumed but not trusted
to have the equivalent function. The degree of sequence
difference between this set and known eukaryotic
(mitochondrial) examples is greater than the distance to
some proteins known to have different functions, and so
separate models are built for prokaryotic and eukaryotic
sets. E. coli has two isozymes. Alternate names include
GABA transaminase, gamma-amino-N-butyrate transaminase,
and beta-alanine--oxoglutarate aminotransferase [Central
intermediary metabolism, Other].
Length = 420
Score = 144 bits (365), Expect = 1e-40
Identities = 81/230 (35%), Positives = 118/230 (51%), Gaps = 27/230 (11%)
Query: 40 NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYED 99
N+ A ++EP+QGE G +VP G++ + C ++ ++FIADEVQTG RTG + A +E
Sbjct: 197 NVAALVIEPVQGEGGFIVPAKGFVPALLDWCREHGIVFIADEVQTGFARTGAMFACEHEG 256
Query: 100 VRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILE 159
PD++ K+L+ GL P+S V E+M PG G TY GNPLAC A+ L +I
Sbjct: 257 PEPDLITTAKSLADGL-PLSGVTGRAEIMDAPAPGGLGGTYAGNPLACAAALAVLAIIES 315
Query: 160 ENMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKM 219
E +IE A ++G + L++ KA G ++ L +E+ D
Sbjct: 316 EGLIERARQIGRLVTDRLTT----LKAVDP-RIGDVRG------LGAMIAVELVDPGTTE 364
Query: 220 KDAG---------------LVTKPISNNIIRLSPALNITEQELREGLDII 254
DAG L+T + NIIR P L I ++ L EGLDI+
Sbjct: 365 PDAGLAERIATAAHAAGLLLLTCGMFGNIIRFLPPLTIGDELLSEGLDIL 414
>gnl|CDD|235885 PRK06918, PRK06918, 4-aminobutyrate aminotransferase; Reviewed.
Length = 451
Score = 144 bits (366), Expect = 1e-40
Identities = 79/229 (34%), Positives = 122/229 (53%), Gaps = 26/229 (11%)
Query: 41 ICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDV 100
I A ++EP+QGE G +VP ++++VR +CS++ +LF+ADE+QTG RTGK AI + DV
Sbjct: 220 IAAVVMEPVQGEGGFIVPSKKFVQEVRNICSEHGILFVADEIQTGFARTGKYFAIEHFDV 279
Query: 101 RPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEE 160
PD++ + K+L G+ PIS V+ E+M PG G TY G+PL C A+ LD+I +E
Sbjct: 280 VPDLITVSKSLGAGV-PISGVIGRKEIMDESAPGELGGTYAGSPLGCAAALAVLDIIEKE 338
Query: 161 NMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMK 220
N+ + A ++G++ + NK + G ++ A V D K
Sbjct: 339 NLNDRAIELGKVVMNRFEEMKNKYNCIGDVRGLG----------AMCAFELVQDRKTKEP 388
Query: 221 DAG---------------LVTKPISNNIIRLSPALNITEQELREGLDII 254
D L++ N+IR+ L IT+++L EGL II
Sbjct: 389 DKTLTANICKEANKRGLLLLSAGTYGNVIRVLMPLVITDEQLEEGLTII 437
>gnl|CDD|181707 PRK09221, PRK09221, beta alanine--pyruvate transaminase;
Provisional.
Length = 445
Score = 144 bits (366), Expect = 2e-40
Identities = 74/241 (30%), Positives = 119/241 (49%), Gaps = 31/241 (12%)
Query: 40 NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYED 99
I A +VEP+ G AG +VP GYL+++R +C ++ +L I DEV TG GR G A
Sbjct: 218 TIAAVIVEPMAGSAGVLVPPKGYLQRLREICDKHGILLIFDEVITGFGRLGAAFAAERFG 277
Query: 100 VRPDIVILGKALSGGLYPISAVLADDEVMGTLVPG-------THGSTYGGNPLACKLAMT 152
V PDI+ K L+ G P+ AV+A DE+ + G HG TY +P+AC +
Sbjct: 278 VTPDIITFAKGLTNGAIPMGAVIASDEIYDAFMQGPEYAIEFFHGYTYSAHPVACAAGLA 337
Query: 153 ALDVILEENMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEV 212
LD+ EE++ E A ++ F + S K GL I+ + + A +E+
Sbjct: 338 TLDIYREEDLFERAAELAPYFEDAV--------HSLK----GLPHVIDIRNIGLVAGIEL 385
Query: 213 -----------YDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINTM 261
Y+ +K + GL+ + + + I LSP L I + ++ E +D + + + +
Sbjct: 386 APRPGAPGARGYEAFMKCFEKGLLVR-YTGDTIALSPPLIIEKAQIDELVDALGDALRAV 444
Query: 262 A 262
A
Sbjct: 445 A 445
>gnl|CDD|235884 PRK06917, PRK06917, hypothetical protein; Provisional.
Length = 447
Score = 144 bits (364), Expect = 3e-40
Identities = 82/246 (33%), Positives = 116/246 (47%), Gaps = 24/246 (9%)
Query: 41 ICAFMVEPIQGEAG-AVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYED 99
I AF+ EPI G AG AVVP GY K ++ +C Y++LFIADEV TGLGRTG + A+ +
Sbjct: 200 IAAFIAEPIIGAAGAAVVPPKGYYKVIKEICDHYDILFIADEVMTGLGRTGAMFAMEHWG 259
Query: 100 VRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTH----GSTYGGNPLACKLAMTALD 155
V PDI+ LGK L G PI+A + D VM ++ G+ G T NPL+ A+ L+
Sbjct: 260 VEPDIMTLGKGLGAGYTPIAATVVSDRVMEPILRGSRSIMSGHTLSANPLSAATALAVLE 319
Query: 156 VILEENMIENAYKMGEIFRSELSSPANKSKASFKLSSGGL---------KKSINTLILSV 206
+ + N+ E A + GE L +S + GL KK+ S
Sbjct: 320 YMEKHNLPEKAAEKGEYLIKGLQKVQQQSTIIGDVRGKGLLIGVEFVADKKTKQPFSKSQ 379
Query: 207 SAILEVYDVCIKMKDAGLVTKPISNNI-------IRLSPALNITEQELREGLDIIINTIN 259
+ E+ GL+ P + ++P + IT EL E L I ++
Sbjct: 380 AVASELIS---VAAKNGLLLYPAVAGQDGKEGDAVIIAPPMTITYSELDELLSIFAKSVE 436
Query: 260 TMAAKK 265
M K
Sbjct: 437 EMMQKG 442
>gnl|CDD|179636 PRK03715, argD, acetylornithine transaminase protein; Provisional.
Length = 395
Score = 142 bits (360), Expect = 4e-40
Identities = 75/239 (31%), Positives = 121/239 (50%), Gaps = 12/239 (5%)
Query: 13 FGPHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQ 72
F P +PG+ ND+ ++E + A M+EP+QGE G + +++++RAL Q
Sbjct: 154 FAPQVPGFPKAELNDIASVEKLI--TDKTVAVMLEPVQGEGGVIPATREFMQQLRALTKQ 211
Query: 73 YNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLV 132
+ +L I DEVQTG GRTG L A + PDI+ LGK + GG+ P++A+LA EV
Sbjct: 212 HGLLLIVDEVQTGCGRTGTLFAYELSGIEPDIMTLGKGIGGGV-PLAALLAKAEV-AVFE 269
Query: 133 PGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSSPANKSKASFKLSS 192
G G TY GNPL + + + +L +E GE + +L + S +
Sbjct: 270 AGDQGGTYNGNPLMTAVGVAVISQLLAPGFLEGVRARGEYLKEKL------LELSEERGL 323
Query: 193 GGLKKS--INTLILSVSAILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELRE 249
G + + L+L ++ + M+ GL+ N++R PALN+T +E+ +
Sbjct: 324 EGERGEGLLRALLLGKDIGPQIVEKARDMQPDGLLLNAPRPNLLRFMPALNVTTEEIDQ 382
>gnl|CDD|235687 PRK06062, PRK06062, hypothetical protein; Provisional.
Length = 451
Score = 142 bits (359), Expect = 2e-39
Identities = 77/233 (33%), Positives = 119/233 (51%), Gaps = 25/233 (10%)
Query: 40 NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYED 99
I A ++E + G AG +VP GYL VR LC ++ ++ IADEV G GRTGK AI +
Sbjct: 214 TIAAILLESVPGTAGILVPPPGYLAGVRELCDRHGIVLIADEVMAGFGRTGKWFAIEHFG 273
Query: 100 VRPDIVILGKALSGGLYPISAVLADDEVMGT----LVPGTHGSTYGGNPLACKLAMTALD 155
V PD++ K ++ G P+ V + + T PG G TY G+PLAC A+ ++
Sbjct: 274 VVPDLITFAKGVNSGYVPLGGVAISEAIAATFADRPYPG--GLTYSGHPLACAAAVATIN 331
Query: 156 VILEENMIENAYKMG-EIFRSELSSPANKSKASFKLSSGGL------------KKSINTL 202
+ EE ++ENA ++G E+ L A + + ++ G+ ++ +
Sbjct: 332 AMEEEGIVENAARIGAEVLGPGLRELAERHPSVGEVRGLGVFWALELVADRETREPLAPY 391
Query: 203 ILSVSAILEVYDVCIKMKDAGLVTKPISN-NIIRLSPALNITEQELREGLDII 254
S +A+ V C K+ GL+ P N N I + P +TE E+REGL I+
Sbjct: 392 GASSAAMAAVKAAC---KERGLL--PFVNGNRIHVVPPCTVTEDEVREGLAIL 439
>gnl|CDD|236032 PRK07495, PRK07495, 4-aminobutyrate aminotransferase; Provisional.
Length = 425
Score = 141 bits (356), Expect = 3e-39
Identities = 83/274 (30%), Positives = 125/274 (45%), Gaps = 40/274 (14%)
Query: 13 FGPHMPGYNIIPY----------NDVDALEAKLKSNPN---ICAFMVEPIQGEAGAVVPD 59
FG MP +P+ + AL+ K++ + + A ++EP+QGE G
Sbjct: 158 FGAMMPDVYHVPFPVELHGVSVEQSLAALDKLFKADVDPQRVAAIIIEPVQGEGGFYPAP 217
Query: 60 DGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPIS 119
++K +R LC Q+ +L IADEVQTG RTGKL A+ + +V D+ + K L+GG P++
Sbjct: 218 AAFMKALRELCDQHGILLIADEVQTGFARTGKLFAMEHHEVAADLTTMAKGLAGGF-PLA 276
Query: 120 AVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSS 179
AV E+M PG G TYGGNPL A LDVI EE++ E A ++G + L+S
Sbjct: 277 AVTGRAEIMDAPGPGGLGGTYGGNPLGIAAAHAVLDVIEEEDLCERANQLGNRLKQRLAS 336
Query: 180 PANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAG---------------L 224
+ G ++ E D + A L
Sbjct: 337 LRETVPEIADIRGPGFMNAV-----------EFNDADSGLPSAEFANRVRLKALEKGLIL 385
Query: 225 VTKPISNNIIRLSPALNITEQELREGLDIIINTI 258
+T + N+IR + I + E LDI+ +I
Sbjct: 386 LTCGVHGNVIRFLAPITIQDDVFAEALDILEASI 419
>gnl|CDD|181493 PRK08593, PRK08593, 4-aminobutyrate aminotransferase; Provisional.
Length = 445
Score = 140 bits (356), Expect = 5e-39
Identities = 77/276 (27%), Positives = 135/276 (48%), Gaps = 24/276 (8%)
Query: 13 FGPHMPGYNIIPYND-------------VDALEAKLKS-------NPNICAFMVEPIQGE 52
+GP +PG+ IP+ D V+ A LK + ++E IQG+
Sbjct: 160 YGPLLPGFVHIPFPDKYRGMYEEPDANFVEEYLAPLKEMFEKYLPADEVACIVIETIQGD 219
Query: 53 AGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALS 112
G + P GY + + C ++ +LF D++Q GLGRTGK +I + ++ PD++ GK+L+
Sbjct: 220 GGLLEPVPGYFEALYKFCREHGILFAVDDIQQGLGRTGKWSSISHFNITPDLMSFGKSLA 279
Query: 113 GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEI 172
GG+ P+SA++ E+M +L H T G NP++C A+ +D+I +E++++ + + GE
Sbjct: 280 GGM-PMSAIVGRKEIMESLEAPAHLFTTGANPVSCAAALATIDMIEDESLLQRSAEKGEY 338
Query: 173 FRSELSSPANKSKASFKLSSGGLKKSINTL---ILSVSAILEVYDVCIKMKDAGLVTKPI 229
R +K + GL I+ + L +C + G+V +
Sbjct: 339 ARKRFDQWVSKYNFVGDVRGYGLSIGIDIVSDKKLKTRDNEAALKICNYCFEHGVVIIAV 398
Query: 230 SNNIIRLSPALNITEQELREGLDIIINTINTMAAKK 265
+ N++R P L IT ++L L+ I + A K
Sbjct: 399 AGNVLRFQPPLVITYEQLDTALNTIEQAFTALEAGK 434
>gnl|CDD|101376 PRK04013, argD, acetylornithine/acetyl-lysine aminotransferase;
Provisional.
Length = 364
Score = 137 bits (347), Expect = 2e-38
Identities = 92/256 (35%), Positives = 126/256 (49%), Gaps = 24/256 (9%)
Query: 4 TTDPTSYNEFGPHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYL 63
T P +F P +PG+ IP+NDV+A AK A + EPIQGE G V + ++
Sbjct: 128 TWKPKYREDFEPLVPGFKHIPFNDVEA--AKEAITKETAAVIFEPIQGEGGIVPAKEEFV 185
Query: 64 KKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLA 123
K +R L L IADEVQ+GL RTGK LAI + V PDIV +GK + G+ P+S L
Sbjct: 186 KTLRDLTEDVGALLIADEVQSGL-RTGKFLAIEHYKVEPDIVTMGKGIGNGV-PVSLTLT 243
Query: 124 DDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSSPANK 183
+ +V G HGST+GGNPLACK L ++ E ++E A GE F K
Sbjct: 244 NFDVE----RGKHGSTFGGNPLACKAVAVTLRILRRERLVEKA---GEKFIEI------K 290
Query: 184 SKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNIT 243
+ GL I L V +E ++++ G + +IRL P L I+
Sbjct: 291 GERVVTTRGRGLMIGI-VLKKPVGKYVE------ELQNRGYLVHTAGQRVIRLLPPLIIS 343
Query: 244 EQELREGLDIIINTIN 259
+ + E I IN
Sbjct: 344 KDTMEEAKSAIEGVIN 359
>gnl|CDD|168967 PRK07481, PRK07481, hypothetical protein; Provisional.
Length = 449
Score = 139 bits (352), Expect = 2e-38
Identities = 68/230 (29%), Positives = 107/230 (46%), Gaps = 20/230 (8%)
Query: 41 ICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDV 100
I AF+ EP+QG G +VP + VR +C ++ +L IADEV TG GRTG V
Sbjct: 214 IAAFIAEPVQGAGGVIVPPANFWPLVREVCDRHGILLIADEVVTGFGRTGSWFGSRGWGV 273
Query: 101 RPDIVILGKALSGGLYPISAVLADDEVMGTLVPGT-------HGSTYGGNPLACKLAMTA 153
+PDI+ L K ++ G P+ A + + + HG TY G+P+AC A+
Sbjct: 274 KPDIMCLAKGITSGYVPLGATMVNARIADAFEANADFGGAIMHGYTYSGHPVACAAALAT 333
Query: 154 LDVILEENMIENAYKMGEIFRSELSSPANKSKASFKLSSGGL---------KKSINTLIL 204
LD+++ E++ NA K G L + + + GL K + +
Sbjct: 334 LDIVVREDLPANAAKRGAYLLEGLQPLKERFELVGDVRGKGLMLALDLVADKATREPIDP 393
Query: 205 SVSAILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDII 254
S V DV ++ G++ +P II LSP L I +++ +D +
Sbjct: 394 SKGYANAVADVA---RENGVLVRPSGTKII-LSPPLVIQREDVDRIVDAL 439
>gnl|CDD|183999 PRK13360, PRK13360, omega amino acid--pyruvate transaminase;
Provisional.
Length = 442
Score = 138 bits (349), Expect = 4e-38
Identities = 78/277 (28%), Positives = 125/277 (45%), Gaps = 29/277 (10%)
Query: 13 FGPHMPGYNIIPYNDVDALEAKLKSNP--------------------NICAFMVEPIQGE 52
FG +PG + +P+ A A K P I A +VEP+ G
Sbjct: 168 FGALLPGVDHLPHTLDLARNAFSKGQPEHGAELADELERLVTLHDASTIAAVIVEPVAGS 227
Query: 53 AGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALS 112
G ++P GYL+++R +C ++ +L I DEV TG GR G A Y V PD++ K L+
Sbjct: 228 TGVLIPPKGYLQRLREICDKHGILLIFDEVITGFGRLGAPFAAQYFGVTPDLLTCAKGLT 287
Query: 113 GGLYPISAVLADDEVMGTLVPGT-------HGSTYGGNPLACKLAMTALDVILEENMIEN 165
G P+ AV E+ + G HG TY G+PLAC A+ LD+ E ++
Sbjct: 288 NGAIPMGAVFVSSEIHDAFMQGPEAGIEFFHGYTYSGHPLACAAALATLDLYEREGLLTR 347
Query: 166 AYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLV 225
A ++ + L S + + + + GL ++ Y+V +K + GL+
Sbjct: 348 AARLAPYWEDALHSLRD-APHVIDIRNLGLVGAVELAPRDGKPGKRAYEVFLKCFEKGLM 406
Query: 226 TKPISNNIIRLSPALNITEQELREGLDIIINTINTMA 262
+ + +I+ LSP L I E ++ E DI+ +
Sbjct: 407 IR-YTGDILALSPPLIIEEAQIDELFDILAQALKETI 442
>gnl|CDD|236149 PRK08088, PRK08088, 4-aminobutyrate aminotransferase; Validated.
Length = 425
Score = 137 bits (347), Expect = 5e-38
Identities = 72/220 (32%), Positives = 117/220 (53%), Gaps = 6/220 (2%)
Query: 40 NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYED 99
+I A ++EP+QGE G +++++RALC ++ ++ IADEVQTG GRTG L A+
Sbjct: 199 DIAAIIIEPVQGEGGFYAASPAFMQRLRALCDEHGIMLIADEVQTGAGRTGTLFAMEQMG 258
Query: 100 VRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILE 159
V D+ K+++GG +P++ V EVM + PG G TY GNP+AC A+ L V +
Sbjct: 259 VAADLTTFAKSIAGG-FPLAGVTGRAEVMDAIAPGGLGGTYAGNPIACAAALAVLKVFEQ 317
Query: 160 ENMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTL---ILSVSAILEVYDVC 216
EN+++ A +GE + L + A K + G +I S +
Sbjct: 318 ENLLQKANALGEKLKDGLLAIAEKHPEIGDVRGLGAMIAIELFEDGDHSKPNAKLTAQIV 377
Query: 217 IKMKDAGLVTKPISN--NIIRLSPALNITEQELREGLDII 254
+ +D GL+ N++R+ L I + ++R+GL+II
Sbjct: 378 ARARDKGLILLSCGPYYNVLRILVPLTIEDAQIRQGLEII 417
>gnl|CDD|180390 PRK06082, PRK06082, 4-aminobutyrate aminotransferase; Provisional.
Length = 459
Score = 137 bits (346), Expect = 2e-37
Identities = 80/261 (30%), Positives = 119/261 (45%), Gaps = 22/261 (8%)
Query: 14 GPHMPGY-NIIPYN------------DV---DALEAKLKSNPNICAFMVEPIQGEAGAVV 57
GP M G I P DV D LE ++ I AF+ E ++ V
Sbjct: 187 GPLMAGVERIPPAVSYRGAFPDADGSDVHYADYLEYVIEKEGGIGAFIAEAVRN-TDVQV 245
Query: 58 PDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYP 117
P Y K+VR +C ++NVL I DE+ G+GRTG+ + PDI+ +GK L GGL P
Sbjct: 246 PSKAYWKRVREICDKHNVLLIIDEIPNGMGRTGEWFTHQAYGIEPDILCIGKGLGGGLVP 305
Query: 118 ISAVLADDEVMGTLVPGTHGS-TYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSE 176
I+A++ D+ T + G T+ +PL C A+ ++VI +E ++E + R
Sbjct: 306 IAAMITKDK-YNTAAQISLGHYTHEKSPLGCAAALATIEVIEQEGLLEKVKADSQFMRER 364
Query: 177 LSSPANKSKASFKLSSGGLKKSINTL---ILSVSAILEVYDVCIKMKDAGLVTKPISNNI 233
L K + GL + + A E V + + GL K N+
Sbjct: 365 LLEMKAKYPLIGDVRGIGLLWGVELVTDRHTKERAYDEAEAVLYRCLNNGLSFKVSQGNV 424
Query: 234 IRLSPALNITEQELREGLDII 254
I+LSP L IT +EL + L I+
Sbjct: 425 IQLSPPLIITREELTQALAIL 445
>gnl|CDD|180690 PRK06777, PRK06777, 4-aminobutyrate aminotransferase; Provisional.
Length = 421
Score = 132 bits (334), Expect = 4e-36
Identities = 68/147 (46%), Positives = 89/147 (60%), Gaps = 5/147 (3%)
Query: 41 ICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDV 100
+ A ++EPIQGE G V ++ +R LC ++ +L IADEVQTG RTGKL A+ Y DV
Sbjct: 199 VAAILLEPIQGEGGFNVAPPEFMSALRTLCDEHGILLIADEVQTGFARTGKLFAMEYYDV 258
Query: 101 RPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEE 160
+PD++ + K+L GG PISAV+ EVM PG G TY GNPLA A+ LDVI EE
Sbjct: 259 KPDLITMAKSLGGG-MPISAVVGRAEVMDAPAPGGLGGTYAGNPLAVAAALAVLDVIAEE 317
Query: 161 NMIENAYKMGEIFRSELSSPANKSKAS 187
+ + A +G L K+KAS
Sbjct: 318 KLCQRALILGA----HLVEVLEKAKAS 340
>gnl|CDD|181078 PRK07678, PRK07678, aminotransferase; Validated.
Length = 451
Score = 130 bits (328), Expect = 4e-35
Identities = 70/239 (29%), Positives = 112/239 (46%), Gaps = 30/239 (12%)
Query: 41 ICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDV 100
I A ++EPI G ++P Y+K V+ +C ++ L I+DEV G GRTGK V
Sbjct: 214 IAAVIMEPIITGGGVLMPPQDYMKAVKEICQKHGALLISDEVICGFGRTGKAFGFMNYGV 273
Query: 101 RPDIVILGKALSGGLYPISAVLADDEVMGTLVPGT-------HGSTYGGNPLACKLAMTA 153
+PDI+ + K ++ P+SA E+ G H +T+GGNP AC LA+
Sbjct: 274 KPDIITMAKGITSAYLPLSATAVKKEIYEAFK-GKGEYEHFRHVNTFGGNPAACALALKN 332
Query: 154 LDVILEENMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLI--------LS 205
L+++ EN+IE + ++GE+ +L + + GL I L+
Sbjct: 333 LEIMENENLIERSAQLGELLLEQLKEELGEHPLVGDIRGKGLLVGIE-LVNDKETKEPAD 391
Query: 206 VSAILEVYDVCIKMKDAGLV------TKPISNNIIRLSPALNITEQELREGLDIIINTI 258
+ V C K+ GL+ T NN++ LSP L I+ +E+ I+ T+
Sbjct: 392 NDKVASVVAAC---KEKGLIIGKNGDTVAGYNNVLTLSPPLVISSEEIA----FIVGTL 443
>gnl|CDD|180330 PRK05965, PRK05965, hypothetical protein; Provisional.
Length = 459
Score = 130 bits (328), Expect = 6e-35
Identities = 61/161 (37%), Positives = 85/161 (52%), Gaps = 9/161 (5%)
Query: 28 VDALEAKLKS--NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTG 85
V AL AK+ N+ AF EPIQG G +VP G+LK +R C + +LF+ADEV TG
Sbjct: 201 VAALRAKVAELGADNVAAFFCEPIQGSGGVIVPPKGWLKAMREACRELGILFVADEVITG 260
Query: 86 LGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGT-------HGS 138
GRTG L A E V PD++ + K L+ G P+ AVL D V + G HG
Sbjct: 261 FGRTGPLFACEAEGVVPDLMTVAKGLTSGYVPMGAVLMSDHVYQGIADGAGAAAPVGHGY 320
Query: 139 TYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSS 179
TY +P++ + + L + E ++ N K G F + L +
Sbjct: 321 TYSAHPVSAAVGLEVLRLYHEGGLLANGQKAGPRFAAGLDA 361
>gnl|CDD|181189 PRK07986, PRK07986, adenosylmethionine--8-amino-7-oxononanoate
transaminase; Validated.
Length = 428
Score = 129 bits (326), Expect = 7e-35
Identities = 62/167 (37%), Positives = 88/167 (52%), Gaps = 8/167 (4%)
Query: 26 NDVDALEAKLKSNPN-ICAFMVEPI-QGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQ 83
D+ + ++ + I A ++EPI QG G + +LK+VR LC + +L IADE+
Sbjct: 189 RDIAPFARLMAAHRHEIAAVILEPIVQGAGGMRIYHPEWLKRVRKLCDREGILLIADEIA 248
Query: 84 TGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPG-----THGS 138
TG GRTGKL A + + PDI+ LGKAL+GG +SA L EV T+ G HG
Sbjct: 249 TGFGRTGKLFACEHAGIAPDILCLGKALTGGTMTLSATLTTREVAETISNGEAGCFMHGP 308
Query: 139 TYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSSPANKSK 185
T+ GNPLAC +A +L +LE + E E +P +
Sbjct: 309 TFMGNPLACAVANASLS-LLESGDWQQQVAAIEAQLREELAPLRDAP 354
>gnl|CDD|180401 PRK06105, PRK06105, aminotransferase; Provisional.
Length = 460
Score = 127 bits (320), Expect = 8e-34
Identities = 72/267 (26%), Positives = 126/267 (47%), Gaps = 49/267 (18%)
Query: 29 DALEAK-LKSNPN-ICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGL 86
+ LEA L P+ I AF+ EP+ G G +VP Y +K++A+ +Y++L +ADEV G
Sbjct: 205 NELEALILAEGPDTIAAFIGEPVMGAGGVIVPPKTYWEKIQAVLRKYDILLVADEVICGF 264
Query: 87 GRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVP-----GT--HGST 139
GRTG + ++PDI+++ K LS P+SAVL +++V + GT HG T
Sbjct: 265 GRTGNMFGCETFGIKPDILVMSKQLSSSYQPLSAVLMNEKVYDPIADESGKIGTFGHGFT 324
Query: 140 YGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSEL----SSP--------------- 180
G+P+A +A+ L +I E +++ NA + G ++ L P
Sbjct: 325 ASGHPVAAAVALENLAIIEERDLVGNAAERGARLQARLRALADHPLVGEVRGVGLIAAVE 384
Query: 181 --ANK-SKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPISNNIIRLS 237
A+K +K F+ G + +A + G++++ + + +
Sbjct: 385 LVADKATKTPFE-PPGKVG-------ARANAAAH---------EHGVISRAMGDT-LAFC 426
Query: 238 PALNITEQELREGLDIIINTINTMAAK 264
P L IT ++ E +D ++ +AA
Sbjct: 427 PPLIITAAQVDEMVDRFGRALDDVAAW 453
>gnl|CDD|180441 PRK06173, PRK06173, adenosylmethionine--8-amino-7-oxononanoate
transaminase; Provisional.
Length = 429
Score = 125 bits (315), Expect = 2e-33
Identities = 59/152 (38%), Positives = 86/152 (56%), Gaps = 7/152 (4%)
Query: 41 ICAFMVEPI-QGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYED 99
I A ++EP+ QG G YL K R LC QY VL I DE+ TG GRTGKL A+ +
Sbjct: 207 IAALILEPVVQGAGGMYFYSPTYLVKARELCDQYGVLLIFDEIATGFGRTGKLFALEHAG 266
Query: 100 VRPDIVILGKALSGGLYPISAVLADDEVMGTLVPG-----THGSTYGGNPLACKLAMTAL 154
V PDI+ +GKAL+GG +SA + + + T+ G HG T+ NPLAC +A ++
Sbjct: 267 VVPDIMCIGKALTGGYLTLSATITTEAIAQTICSGEAKCFMHGPTFMANPLACAIAAESI 326
Query: 155 DVILEENMIENAYKMGEIFRSELSSPANKSKA 186
++LE +N ++ + EL +PA + +
Sbjct: 327 RLLLESPWQQNIQRIEAQLKQEL-APAAEFDS 357
>gnl|CDD|180994 PRK07480, PRK07480, putative aminotransferase; Validated.
Length = 456
Score = 123 bits (312), Expect = 1e-32
Identities = 50/142 (35%), Positives = 82/142 (57%), Gaps = 6/142 (4%)
Query: 29 DALEAK-LKSNP-NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGL 86
LEAK L+ N+ AF+ EPIQG G ++P Y +++ +C +Y++L +ADEV G
Sbjct: 206 RQLEAKILELGADNVAAFIGEPIQGAGGVIIPPATYWPEIQRICRKYDILLVADEVICGF 265
Query: 87 GRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPG----THGSTYGG 142
GRTG+ + ++PD++ + K L+ G P+ AV D V L+ HG TY G
Sbjct: 266 GRTGEWFGSQHFGIKPDLMTIAKGLTSGYIPMGAVGVGDRVAEVLIEEGGEFNHGFTYSG 325
Query: 143 NPLACKLAMTALDVILEENMIE 164
+P+A +A+ L ++ +E ++E
Sbjct: 326 HPVAAAVALANLRILRDEGIVE 347
>gnl|CDD|235913 PRK07036, PRK07036, hypothetical protein; Provisional.
Length = 466
Score = 123 bits (311), Expect = 1e-32
Identities = 79/258 (30%), Positives = 126/258 (48%), Gaps = 26/258 (10%)
Query: 28 VDALEAK-LKSNP-NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTG 85
VD E K L NI AF+ EPI G G +VP GY ++R +C +Y++L+I+DEV TG
Sbjct: 206 VDEFEDKILSLGADNIAAFIAEPILGSGGVIVPPPGYHARMREICRRYDILYISDEVVTG 265
Query: 86 LGRTGKLLAIH-YEDVRPDIVILGKALSGGLYPISAVLADDEVMGTL----VPG---THG 137
GR G A ++PDI+ K L+ G P+ AV+ + ++ + G THG
Sbjct: 266 FGRLGHFFASEAVFGIQPDIITFAKGLTSGYQPLGAVIISERLLDVISGPNAKGNVFTHG 325
Query: 138 STYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSS----PANKSKASFKLSSG 193
TY G+P+AC A+ ++++ E + E+ ++G F L+S P L +
Sbjct: 326 FTYSGHPVACAAALKNIEIMEREGLCEHVREVGPYFEERLASLRELPLVGDVRGDHLMAC 385
Query: 194 ----GLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELRE 249
K S L ++ + C + GL+ +P+ + + LSP L IT ++ E
Sbjct: 386 VECVADKGSKALLPEDIAIGQRIDRHCQER---GLLVRPLEHLCV-LSPPLIITRAQIDE 441
Query: 250 GLDI----IINTINTMAA 263
+ I I T + +AA
Sbjct: 442 IVAILRAAIEETADELAA 459
>gnl|CDD|223080 COG0001, HemL, Glutamate-1-semialdehyde aminotransferase [Coenzyme
metabolism].
Length = 432
Score = 121 bits (307), Expect = 4e-32
Identities = 59/163 (36%), Positives = 82/163 (50%), Gaps = 7/163 (4%)
Query: 22 IIPYNDVDALEAKLKSNPN-ICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIAD 80
++PYND++ALE + + I A +VEP+ G G V P+ G+L+ +R L ++ L I D
Sbjct: 181 VLPYNDLEALEEAFEEYGDDIAAVIVEPVAGNMGVVPPEPGFLEGLRELTEEHGALLIFD 240
Query: 81 EVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPG---THG 137
EV TG R A Y V PD+ LGK + GGL PI A E+M L P
Sbjct: 241 EVITGF-RVALGGAQGYYGVEPDLTTLGKIIGGGL-PIGAFGGRAEIMEQLAPLGPVYQA 298
Query: 138 STYGGNPLACKLAMTALDVI-LEENMIENAYKMGEIFRSELSS 179
T GNPLA + L+ + EE + E +GE L +
Sbjct: 299 GTLSGNPLAMAAGLATLEELMTEEGVYERLDALGERLAEGLRA 341
>gnl|CDD|168145 PRK05639, PRK05639, 4-aminobutyrate aminotransferase; Provisional.
Length = 457
Score = 121 bits (306), Expect = 5e-32
Identities = 73/228 (32%), Positives = 125/228 (54%), Gaps = 5/228 (2%)
Query: 41 ICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDV 100
+ A EPIQG+AG VVP + + K+++ L ++ +L + DEVQTG+GRTGK A + +V
Sbjct: 223 VAALFAEPIQGDAGIVVPPENFFKELKKLLDEHGILLVMDEVQTGIGRTGKWFASEWFEV 282
Query: 101 RPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEE 160
+PD++I GK ++ G+ +S V+ E+M L G+ T NP+ A L++I EE
Sbjct: 283 KPDLIIFGKGVASGM-GLSGVIGRKELM-DLTSGSALLTPAANPVISAAAEATLEIIEEE 340
Query: 161 NMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVY-DVCIKM 219
N+++NA K+GE + L + + GL + + + E+ +C +
Sbjct: 341 NLLKNALKVGEFIKKRLLEMKESFEVIGDVRGKGLMIGVEIVKENGKPDPELTGKICWRA 400
Query: 220 KDAGLV--TKPISNNIIRLSPALNITEQELREGLDIIINTINTMAAKK 265
+ GL+ + + N+IR++P L IT++ +GL+I+ I A K
Sbjct: 401 FELGLILPSYGMFGNVIRITPPLVITKEIAEKGLEIMERAIKDALAGK 448
>gnl|CDD|236336 PRK08742, PRK08742, adenosylmethionine--8-amino-7-oxononanoate
transaminase; Provisional.
Length = 472
Score = 119 bits (300), Expect = 4e-31
Identities = 75/241 (31%), Positives = 119/241 (49%), Gaps = 25/241 (10%)
Query: 18 PGYNIIPYNDV--DALEAKLKSNP-NICAFMVEP-IQGEAGAVVPDDGYLKKVRALCSQY 73
PG + Y DAL+A + +P ICA ++EP +Q G + YL++ R LC +
Sbjct: 211 PGQSAEDYALQAADALQALFEQSPGEICALILEPRLQCAGGMRMHHPAYLRRARELCDAH 270
Query: 74 NVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVP 133
IADE+ TG GRTG L A V PD++ L K L+GG P+SAVLA ++ +
Sbjct: 271 GAFLIADEIATGFGRTGTLFACEQAGVMPDLLCLSKGLTGGFLPLSAVLATQQLYDAFLD 330
Query: 134 GT------HGSTYGGNPLACKLAMTALDVILEENMIEN----AYKMGEIFR--SELSSPA 181
+ H +Y GNPLAC A+ LD+ ++++I A +M ++ E A
Sbjct: 331 DSRERAFLHSHSYTGNPLACAAALATLDIFADDDVIARNQPTAARMTQLAAQIGEHPHVA 390
Query: 182 NKSKA----SFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPISNNIIRLS 237
+ +A +F+L+ GG K++ V L Y + G+V +P+ + + +
Sbjct: 391 DVRQAGMVVAFELTRGGNKRTPFPPAARVG--LHAYRAAL---ARGVVLRPLGDVLYWMP 445
Query: 238 P 238
P
Sbjct: 446 P 446
>gnl|CDD|235823 PRK06541, PRK06541, hypothetical protein; Provisional.
Length = 460
Score = 118 bits (299), Expect = 7e-31
Identities = 43/143 (30%), Positives = 75/143 (52%), Gaps = 4/143 (2%)
Query: 41 ICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDV 100
+ A +EP+Q G P GY ++VR +C +Y+VL ++DEV GR G++
Sbjct: 222 VAAVFLEPVQNAGGCFPPPPGYFERVREICDRYDVLLVSDEVICAFGRLGEMFGCERFGY 281
Query: 101 RPDIVILGKALSGGLYPISAVLADDEVMGTLVPGT----HGSTYGGNPLACKLAMTALDV 156
PDI+ K ++ G P+ A++A D + + G HG T+GG+P++ +A+ LD+
Sbjct: 282 VPDIITCAKGITSGYSPLGAMIASDRLFEPFLDGPTMFLHGYTFGGHPVSAAVALANLDI 341
Query: 157 ILEENMIENAYKMGEIFRSELSS 179
E ++++ FR+ L
Sbjct: 342 FEREGLLDHVRDNEPAFRATLEK 364
>gnl|CDD|236224 PRK08297, PRK08297, L-lysine aminotransferase; Provisional.
Length = 443
Score = 116 bits (294), Expect = 3e-30
Identities = 87/293 (29%), Positives = 133/293 (45%), Gaps = 49/293 (16%)
Query: 2 LITTDPTSYNEF---------GPHM----PGYNIIPYNDVDALEAK--------LKSNP- 39
L TDP F P + PG ++ +V+ALEA+ + +P
Sbjct: 168 LTNTDPRKTARFPKFDWPRIDNPKLRFPLPGEDL---EEVEALEAEALAQARAAFERHPH 224
Query: 40 NICAFMVEPIQGEAGAVVPD----DGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAI 95
+I F+ EPIQGE G D + +R LC +++ L I DEVQTG+G TG A
Sbjct: 225 DIACFIAEPIQGEGG----DNHFRPEFFAAMRELCDEHDALLIFDEVQTGVGLTGTAWAY 280
Query: 96 HYEDVRPDIVILGKALSGGLYPISAVLAD---DEVMGTL--VPGTHGSTYGGNPLACKLA 150
VRPDIV GK + ++A DEV + V ST+GGN + A
Sbjct: 281 QQLGVRPDIVAFGKKTQ-----VCGIMAGRRVDEVEDNVFAVSSRINSTWGGNLVDMVRA 335
Query: 151 MTALDVILEENMIENAYKMGEIFRSELSSPANKSKASFKLSSG-GLKKSINTLILSVSAI 209
L+VI E+ ++ENA + GE + L A + A G GL + + L +A
Sbjct: 336 RRILEVIEEDGLVENAARQGEYLLARLEELAAEFPAVVSNVRGRGLMCAFD---LPTTAD 392
Query: 210 LEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINTMA 262
+ +V ++ + G++ P IR PAL +T +E+ +D + + +A
Sbjct: 393 RD--EVIRRLWEEGVLVLPCGERSIRFRPALTVTTEEIDAAIDALRRALPEVA 443
>gnl|CDD|180800 PRK07030, PRK07030, adenosylmethionine--8-amino-7-oxononanoate
transaminase; Provisional.
Length = 466
Score = 117 bits (294), Expect = 4e-30
Identities = 62/155 (40%), Positives = 83/155 (53%), Gaps = 13/155 (8%)
Query: 30 ALEAKLKSNPN-ICAFMVEP-IQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLG 87
+E L + + I A +VEP IQG G + YLK +R C +Y V I DE+ G G
Sbjct: 203 HMEQTLAEHHDEIAAVIVEPLIQGAGGMRMYHPVYLKLLREACDRYGVHLIHDEIAVGFG 262
Query: 88 RTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEV-------MGTLVPGTHGSTY 140
RTG + A +RPD + L KAL+GG P++AVL D V TL H +Y
Sbjct: 263 RTGTMFACEQAGIRPDFLCLSKALTGGYLPLAAVLTTDTVYQAFYDDYPTLRAFLHSHSY 322
Query: 141 GGNPLACKLAMTALDVILEENMIEN----AYKMGE 171
GNPLAC A+ LD+ ++N+IEN A +M E
Sbjct: 323 TGNPLACAAALATLDIFEQDNVIENNRALARRMAE 357
>gnl|CDD|182078 PRK09792, PRK09792, 4-aminobutyrate transaminase; Provisional.
Length = 421
Score = 115 bits (290), Expect = 5e-30
Identities = 66/179 (36%), Positives = 104/179 (58%), Gaps = 16/179 (8%)
Query: 13 FGP------HMPG----YNIIPYNDVDALEAKLKSN---PNICAFMVEPIQGEAGAVVPD 59
FGP H+P + I + +DA+E KS+ + A + EP+QGE G V
Sbjct: 158 FGPFPGSVYHVPYPSDLHGISTQDSLDAIERLFKSDIEAKQVAAIIFEPVQGEGGFNVAP 217
Query: 60 DGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAI-HYEDVRPDIVILGKALSGGLYPI 118
+ +R LC ++ ++ IADEVQ+G RTGKL A+ HY D +PD++ + K+L+GG+ P+
Sbjct: 218 KELVAAIRRLCDEHGIVMIADEVQSGFARTGKLFAMDHYAD-KPDLMTMAKSLAGGM-PL 275
Query: 119 SAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSEL 177
S V+ + +M PG G TY GNPLA A L++I +E++ E A ++G+ ++ L
Sbjct: 276 SGVVGNANIMDAPAPGGLGGTYAGNPLAVAAAHAVLNIIDKESLCERANQLGQRLKNTL 334
>gnl|CDD|235892 PRK06938, PRK06938, diaminobutyrate--2-oxoglutarate
aminotransferase; Provisional.
Length = 464
Score = 114 bits (288), Expect = 3e-29
Identities = 47/135 (34%), Positives = 74/135 (54%), Gaps = 2/135 (1%)
Query: 43 AFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRP 102
A ++E +QGE G + +L+ +R + + + I DE+Q+G GRTGK+ A + + P
Sbjct: 234 AVILEVVQGEGGVIPAPIEWLRGLRRITEEAGIPLIVDEIQSGFGRTGKMFAFEHAGIIP 293
Query: 103 DIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENM 162
D+V+L KA+ G L P++ V+ + + T PG H T+ GN +A L I E +
Sbjct: 294 DVVVLSKAIGGSL-PLAVVVYREW-LDTWQPGAHAGTFRGNQMAMAAGSATLRYIKEHRL 351
Query: 163 IENAYKMGEIFRSEL 177
E+A MGE R L
Sbjct: 352 AEHAAAMGERLREHL 366
>gnl|CDD|234607 PRK00062, PRK00062, glutamate-1-semialdehyde aminotransferase;
Provisional.
Length = 426
Score = 114 bits (287), Expect = 3e-29
Identities = 60/172 (34%), Positives = 80/172 (46%), Gaps = 22/172 (12%)
Query: 24 PYNDVDALEAKLKSNPN-ICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEV 82
PYND++A+E + + I A +VEP+ G G V P G+L+ +R LC ++ L I DEV
Sbjct: 180 PYNDLEAVEELFEEYGDEIAAVIVEPVAGNMGVVPPKPGFLEGLRELCDEHGALLIFDEV 239
Query: 83 QTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVP-------GT 135
TG R A Y V PD+ LGK + GGL P+ A E+M L P G
Sbjct: 240 MTGF-RVALGGAQGYYGVTPDLTTLGKIIGGGL-PVGAFGGRREIMEQLAPLGPVYQAG- 296
Query: 136 HGSTYGGNPLACKLAMTA----LDVILEENMIENAYKMGEIFRSELSSPANK 183
T GNP LAM A L ++ E E + + L A K
Sbjct: 297 ---TLSGNP----LAMAAGLATLKLLKEPGFYEELEALTKRLAEGLKEAAKK 341
>gnl|CDD|235894 PRK06943, PRK06943, adenosylmethionine--8-amino-7-oxononanoate
transaminase; Provisional.
Length = 453
Score = 113 bits (284), Expect = 7e-29
Identities = 55/149 (36%), Positives = 76/149 (51%), Gaps = 9/149 (6%)
Query: 29 DALEAKLKSNP-NICAFMVEP-IQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGL 86
+ I A +VEP +Q AG + D YL+ +RALC +Y V IADE+ G
Sbjct: 209 ADVRRLFAERAGKIAALIVEPLVQCAAGMAMHDPSYLRGLRALCDRYGVHLIADEIAVGC 268
Query: 87 GRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGT------HGSTY 140
GRTG A V PD + L K +SGG P+S VL+ D + H +Y
Sbjct: 269 GRTGTFFACEQAGVWPDFLCLSKGISGGYLPLSLVLSRDAIFAAFYDDDVTRGFLHSHSY 328
Query: 141 GGNPLACKLAMTALDVILEENMI-ENAYK 168
GNPLAC+ A+ LD+ E++++ NA K
Sbjct: 329 TGNPLACRAALATLDLFAEDDVLARNARK 357
>gnl|CDD|215405 PLN02760, PLN02760, 4-aminobutyrate:pyruvate transaminase.
Length = 504
Score = 113 bits (284), Expect = 1e-28
Identities = 57/161 (35%), Positives = 86/161 (53%), Gaps = 18/161 (11%)
Query: 35 LKSNP-NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLL 93
LK P I AF+ EP+ G G + P Y +K++A+ +Y++LFIADEV GR G +
Sbjct: 254 LKEGPETIAAFIAEPVMGAGGVIPPPATYFEKIQAVLKKYDILFIADEVICAFGRLGTMF 313
Query: 94 AIHYEDVRPDIVILGKALSGGLYPISAVLADDEV----------MGTLVPGTHGSTYGGN 143
+++PD+V L KALS PI AVL E+ +G+ HG TY G+
Sbjct: 314 GCDKYNIKPDLVSLAKALSSAYMPIGAVLVSPEISDVIHSQSNKLGSF---AHGFTYSGH 370
Query: 144 PLACKLAMTALDVILEENMIENAYKMGEIFRSEL----SSP 180
P++C +A+ AL + E N+ E+ K+ F+ + SP
Sbjct: 371 PVSCAVALEALKIYKERNIPEHVNKIAPRFQDGIKAFSGSP 411
>gnl|CDD|236026 PRK07482, PRK07482, hypothetical protein; Provisional.
Length = 461
Score = 112 bits (283), Expect = 1e-28
Identities = 50/145 (34%), Positives = 80/145 (55%), Gaps = 7/145 (4%)
Query: 40 NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYED 99
I AF+ EP+ G G V P GY ++A+ +Y++L IADEV TG GR G + +
Sbjct: 220 TIAAFIAEPVLGTGGIVPPPAGYWPAIQAVLKKYDILLIADEVVTGFGRLGSMFGSDHYG 279
Query: 100 VRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGT-------HGSTYGGNPLACKLAMT 152
+ PD++ + K L+ P+S + ++V L G+ HG TY G+P+ A+
Sbjct: 280 IEPDLITVAKGLTSAYAPLSGSIVGEKVWDVLEQGSDEHGAIGHGWTYSGHPICAAAALA 339
Query: 153 ALDVILEENMIENAYKMGEIFRSEL 177
LD++ EN++ NA ++G FR+ L
Sbjct: 340 NLDILERENLVGNAAEVGAYFRARL 364
>gnl|CDD|129792 TIGR00709, dat, 2,4-diaminobutyrate 4-transaminases. This family
consists of L-diaminobutyric acid transaminases. This
general designation covers both 2.6.1.76
(diaminobutyrate-2-oxoglutarate transaminase, which uses
glutamate as the amino donor in DABA biosynthesis), and
2.6.1.46 (diaminobutyrate--pyruvate transaminase, which
uses alanine as the amino donor). Most members with
known function are 2.6.1.76, and at least some
annotations as 2.6.1.46 in current databases at time of
model revision are incorrect. A distinct branch of this
family contains examples of 2.6.1.76 nearly all of which
are involved in ectoine biosynthesis. A related enzyme
is 4-aminobutyrate aminotransferase (EC 2.6.1.19), also
called GABA transaminase. These enzymes all are
pyridoxal phosphate-containing class III
aminotransferase [Central intermediary metabolism,
Other].
Length = 442
Score = 109 bits (273), Expect = 2e-27
Identities = 64/227 (28%), Positives = 102/227 (44%), Gaps = 13/227 (5%)
Query: 43 AFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRP 102
A ++E IQGE G V +L+K+R + ++++ I DEVQ G GR+G + A + + P
Sbjct: 209 AVILEAIQGEGGVVAAPSEWLQKIREVTRKHDIKLILDEVQAGFGRSGTMFAFEHAGIEP 268
Query: 103 DIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENM 162
D V++ KA+ GGL P+ AVL P H T+ GN LA AL+ ++N+
Sbjct: 269 DFVVMSKAVGGGL-PL-AVLLIAPEFDAWQPAGHTGTFRGNQLAMVTGTEALNYWKDDNL 326
Query: 163 IENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSA-ILEVYDVCIKMKD 221
+NA + GE S L + + GL + I + S Y ++
Sbjct: 327 AQNAQERGERITSFLDDMIKEHPCIGNVRGRGLMQGIMIVDERQSKDATGAYPRDCELAA 386
Query: 222 A--------GLV--TKPISNNIIRLSPALNITEQELREGLDIIINTI 258
A GL+ T + RL + I ++E EG+ +
Sbjct: 387 AIQGACFENGLLLETGGREGEVFRLLCPITIDQEECEEGISRFKQAV 433
>gnl|CDD|235889 PRK06931, PRK06931, diaminobutyrate--2-oxoglutarate
aminotransferase; Provisional.
Length = 459
Score = 109 bits (273), Expect = 3e-27
Identities = 71/222 (31%), Positives = 114/222 (51%), Gaps = 15/222 (6%)
Query: 43 AFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRP 102
A ++E IQGE G +L+K+R + ++ +L I DEVQ G RTGK+ A + + P
Sbjct: 228 AVILEAIQGEGGVNPAPVEWLQKIREVTQKHGILLIVDEVQAGFARTGKMFAFEHAGIEP 287
Query: 103 DIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENM 162
DI+++ KA+ GGL P+ AVL + PG H T+ GN LA +T L ++ EEN+
Sbjct: 288 DIIVMSKAVGGGL-PL-AVLGIKKEFDAWQPGGHTGTFRGNQLAMATGLTTLKILKEENL 345
Query: 163 IENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTL--------ILSVSAILEVYD 214
+NA + GE +++L+ + + GL I + + S A E+
Sbjct: 346 AQNAAERGEWLKAQLAELQKRYPCIGNVRGRGLMIGIEIVDERQPADAMGSYPADGEL-A 404
Query: 215 VCIKMK--DAGLVTKP--ISNNIIRLSPALNITEQELREGLD 252
I+ + GL+ + + N++RL P L IT+ E E +D
Sbjct: 405 AAIQKACFENGLLLERGGRNGNVVRLLPPLLITQAECEEFID 446
>gnl|CDD|233100 TIGR00713, hemL, glutamate-1-semialdehyde-2,1-aminomutase. This
enzyme, glutamate-1-semialdehyde-2,1-aminomutase
(glutamate-1-semialdehyde aminotransferase, GSA
aminotransferase), contains a pyridoxal phosphate
attached at a Lys residue at position 283 of the seed
alignment. It is in the family of class III
aminotransferases [Biosynthesis of cofactors, prosthetic
groups, and carriers, Heme, porphyrin, and cobalamin].
Length = 423
Score = 107 bits (269), Expect = 8e-27
Identities = 58/176 (32%), Positives = 81/176 (46%), Gaps = 6/176 (3%)
Query: 23 IPYNDVDALEAKLKSN-PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADE 81
+PYND++ALE + I +VEP+ G G V P +L +RAL +Y L I DE
Sbjct: 177 LPYNDLEALEEVFEEYGEEIAGVIVEPVAGNMGVVPPKPEFLAGLRALTEEYGSLLIFDE 236
Query: 82 VQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVP-GT--HGS 138
V TG R A Y V PD+ LGK + GGL P+ A E+M L P G
Sbjct: 237 VMTGF-RVALGGAQEYFGVEPDLTTLGKIIGGGL-PVGAFGGRREIMERLAPEGPVYQAG 294
Query: 139 TYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSSPANKSKASFKLSSGG 194
T GNPLA + L ++ EE + ++ + LS + ++ G
Sbjct: 295 TLSGNPLAMAAGLATLKLLDEEGVYTELDELAKRLAEGLSEVLEDTGIPHTVNRVG 350
>gnl|CDD|236437 PRK09264, PRK09264, diaminobutyrate--2-oxoglutarate
aminotransferase; Validated.
Length = 425
Score = 106 bits (268), Expect = 1e-26
Identities = 73/231 (31%), Positives = 115/231 (49%), Gaps = 16/231 (6%)
Query: 43 AFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRP 102
A +VE +QGE G V +L+++ LC ++++L I D++Q G GRTG + + P
Sbjct: 201 AVIVETVQGEGGINVASAEWLQRLAKLCRKHDILLIVDDIQAGCGRTGTFFSFERAGITP 260
Query: 103 DIVILGKALSG-GLYPISAVLADDE--VMGTLVPGTHGSTYGGNPLACKLAMTALDVILE 159
DIV L K++SG GL P++ VL E V PG H T+ GN LA A AL+
Sbjct: 261 DIVTLSKSISGYGL-PMALVLIKPELDVWK---PGEHNGTFRGNNLAFVTATAALEEYWS 316
Query: 160 ENMIENAYK-MGEIFRSELSSPANKSKASFKLSSG-GLKKSINTLILSVSAILEVYDVCI 217
++ E K GE+ R L A K G G+ + I+ ++ +
Sbjct: 317 DDAFEKEVKAKGELVRERLEEIAAKYPGLGAEVRGRGMMQGIDFGDGELAG-----KIAA 371
Query: 218 KMKDAGLV--TKPISNNIIRLSPALNITEQELREGLDIIINTINTMAAKKT 266
+ + GL+ T + +++L P L I E+EL EGLDI+ + + A++
Sbjct: 372 EAFENGLIIETSGPEDEVVKLLPPLTIDEEELEEGLDILEEAVAEVLAEEE 422
>gnl|CDD|233853 TIGR02407, ectoine_ectB, diaminobutyrate--2-oxoglutarate
aminotransferase. Members of this family of class III
pyridoxal-phosphate-dependent aminotransferases are
diaminobutyrate--2-oxoglutarate aminotransferase (EC
2.6.1.76) that catalyze the first step in ectoine
biosynthesis from L-aspartate beta-semialdehyde. This
family is readily separated phylogenetically from
enzymes with the same substrate and product but involved
in other process such as siderophore (SP|Q9Z3R2) or
1,3-diaminopropane (SP|P44951) biosynthesis. The family
TIGR00709 previously included both groups but has now
been revised to exclude the ectoine biosynthesis
proteins of this family. Ectoine is a compatible solute
particularly effective in conferring salt tolerance
[Cellular processes, Adaptations to atypical
conditions].
Length = 412
Score = 105 bits (264), Expect = 3e-26
Identities = 66/216 (30%), Positives = 108/216 (50%), Gaps = 10/216 (4%)
Query: 43 AFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRP 102
A ++E +QGE G V D +L+++ LC ++++L I D++Q G GRTG + + P
Sbjct: 197 AVILETVQGEGGINVASDEWLQRLEKLCRRHDILLIVDDIQAGCGRTGTFFSFEPAGIEP 256
Query: 103 DIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENM 162
DIV L K++SG P++ L E + PG H T+ GN LA A AL+ ++
Sbjct: 257 DIVCLSKSISGYGLPLALTLIKPE-LDVWKPGEHNGTFRGNNLAFVTATAALEYYWSDDA 315
Query: 163 IENA-YKMGEIFRSELSSPANKSKASFKLSSG-GLKKSINTLILSVSAILEVYDVCIKMK 220
E A + EI + L + K G GL + I ++ ++
Sbjct: 316 FEKAVQRKSEIIQERLDRIVAEYPELIKQVRGRGLMQGIECGDGDLAG--KIAKAAF--- 370
Query: 221 DAGLV--TKPISNNIIRLSPALNITEQELREGLDII 254
+ GL+ T ++ +I+L P L I E+ L++GLDI+
Sbjct: 371 ENGLIIETSGPNDEVIKLLPPLTIDEETLQQGLDIL 406
>gnl|CDD|180174 PRK05630, PRK05630, adenosylmethionine--8-amino-7-oxononanoate
transaminase; Provisional.
Length = 422
Score = 104 bits (262), Expect = 6e-26
Identities = 57/161 (35%), Positives = 83/161 (51%), Gaps = 16/161 (9%)
Query: 11 NEFGPHMPGYNIIPYNDVDALEAKLKS--NPNICAFMVEPI-QGEAGAVVPDDGYLKKVR 67
F P P P ++ L+ + + A ++EPI QG G D ++ VR
Sbjct: 170 QIFAPAPPVRGSSP-QEISEYLRSLELLIDETVAAIIIEPIVQGAGGMRFHDVALIEGVR 228
Query: 68 ALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEV 127
LC ++++L IADE+ TG GRTG+L A V PDI+ +GKAL+GG +A L D+V
Sbjct: 229 TLCDKHDILLIADEIATGFGRTGELFATLAAGVTPDIMCVGKALTGGFMSFAATLCTDKV 288
Query: 128 M---------GTLVPGTHGSTYGGNPLACKLAMTALDVILE 159
G L+ HG T+ NPLAC +A +L++I
Sbjct: 289 AQLISTPNGGGALM---HGPTFMANPLACAVAHASLEIIET 326
>gnl|CDD|180426 PRK06148, PRK06148, hypothetical protein; Provisional.
Length = 1013
Score = 104 bits (262), Expect = 2e-25
Identities = 51/159 (32%), Positives = 80/159 (50%), Gaps = 26/159 (16%)
Query: 27 DVDALEAKLKS-NPNICAFMVEPIQGEAGAVVPDDGYLK----KVRA---LCSQYNVLFI 78
V A + + F+ E I AG + +GYL+ VRA +C I
Sbjct: 770 SVAEQIAAMAAKGRGPAFFIAESIPSVAGQIFLPEGYLREVYAMVRAAGGVC-------I 822
Query: 79 ADEVQTGLGRTGKLLAIHY-----EDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVP 133
ADEVQ G GR G H+ + V PDIV +GK + G +P+ AV+ E+ +
Sbjct: 823 ADEVQVGFGRVGS----HWWAFETQGVVPDIVTMGKPIGNG-HPMGAVVTTREIADSFDN 877
Query: 134 GT-HGSTYGGNPLACKLAMTALDVILEENMIENAYKMGE 171
G + +T+GGNP++C + + LD+I +E++ NA ++G
Sbjct: 878 GMEYFNTFGGNPVSCAIGLAVLDIIEDEDLQRNALEIGN 916
>gnl|CDD|132295 TIGR03251, LAT_fam, L-lysine 6-transaminase. Characterized members
of this protein family are L-lysine 6-transaminase, also
called lysine epsilon-aminotransferase (LAT). The
immediate product of the reaction of this enzyme on
lysine, 2-aminoadipate 6-semialdehyde, becomes
1-piperideine 6-carboxylate, or P6C. This product may be
converted subsequently to pipecolate or
alpha-aminoadipate, lysine catabolites that may be
precursors of certain seconary metabolites.
Length = 431
Score = 103 bits (258), Expect = 2e-25
Identities = 80/278 (28%), Positives = 120/278 (43%), Gaps = 35/278 (12%)
Query: 2 LITTDPTSYNEF---------GPHM-PGYNIIPYNDVDALEAK--------LKSNP-NIC 42
L TDP F P + + + V ALE + P +I
Sbjct: 161 LTNTDPRKTARFPKFDWPRIDNPKLTFPLDAPNLDQVIALEEEALRQARAAFAERPHDIA 220
Query: 43 AFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRP 102
F+ EPIQGE G +L+ +RALC +++ L I DEVQTG+G TG A V+P
Sbjct: 221 CFIAEPIQGEGGDNHFRPEFLRAMRALCDEHDALLIFDEVQTGVGLTGTAWAYQQLGVQP 280
Query: 103 DIVILGKALSGGLYPISAVLAD---DEVMGTL--VPGTHGSTYGGNPLACKLAMTALDVI 157
DIV GK + ++A DEV + VP ST+GGN + A L++I
Sbjct: 281 DIVAFGKKTQ-----VCGIMAGRRVDEVADNVFAVPSRLNSTWGGNLVDMVRATRILEII 335
Query: 158 LEENMIENAYKMGEIFRSELSSPANKSKASFKLSSG-GLKKSINTLILSVSAILEVYDVC 216
EE +++NA G + L A + G GL + + L +A + +V
Sbjct: 336 EEERLVDNARVQGAHLLARLHELAAEFPHLVSNPRGRGLMCAFD---LPSTADRD--EVI 390
Query: 217 IKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDII 254
++ G++ IR P L +T +E+ +D I
Sbjct: 391 RQLYREGVLLLGCGERSIRFRPPLTVTREEIDAAIDAI 428
>gnl|CDD|235716 PRK06149, PRK06149, hypothetical protein; Provisional.
Length = 972
Score = 100 bits (251), Expect = 6e-24
Identities = 52/148 (35%), Positives = 82/148 (55%), Gaps = 13/148 (8%)
Query: 43 AFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHY----- 97
F+ EP+ G AG + GYL++V A + IADEVQ G GR G HY
Sbjct: 747 GFICEPVYGNAGGIALPPGYLQQVYAAVRARGGVCIADEVQVGYGRLG-----HYFWGFE 801
Query: 98 -EDVRPDIVILGKALSGGLYPISAVLADDEVMGTL-VPGTHGSTYGGNPLACKLAMTALD 155
+ V PDI+ + K + G +P+ AV+ E+ L G S+ GG+P++C++ M LD
Sbjct: 802 QQGVVPDIITMAKGMGNG-HPLGAVITRREIAEALEAEGYFFSSTGGSPVSCRIGMAVLD 860
Query: 156 VILEENMIENAYKMGEIFRSELSSPANK 183
V+ EE + ENA ++G+ ++ L + A++
Sbjct: 861 VLREEKLQENARRVGDHLKARLEALADR 888
>gnl|CDD|235917 PRK07046, PRK07046, aminotransferase; Validated.
Length = 453
Score = 99.3 bits (248), Expect = 8e-24
Identities = 50/159 (31%), Positives = 73/159 (45%), Gaps = 27/159 (16%)
Query: 23 IPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEV 82
+ +ND+ ALEA L ++ A + EP G V+P+ G+ + +R L +Y L + DE
Sbjct: 202 VEFNDLAALEAALADG-DVAAVLAEPAMTNIGMVLPEPGFHEALRELTRRYGTLLVIDET 260
Query: 83 QT------GLGRTGKLLAIHYEDVRPDIVILGKALSGGL----YPISAVLAD--DEVMGT 130
T G R L PD +++GK ++GG+ Y SA LA+ +
Sbjct: 261 HTISSGPGGYTRAHGL--------EPDFLVVGKPIAGGVPCAVYGFSAELAERAQAAKAS 312
Query: 131 LVPGTH--GSTYGGNPLACKLAMTALDVILEENMIENAY 167
PG G+T N LAM A+ L E M E AY
Sbjct: 313 APPGHSGIGTTLSANA----LAMAAMRATLAEVMTEAAY 347
>gnl|CDD|171472 PRK12403, PRK12403, putative aminotransferase; Provisional.
Length = 460
Score = 96.1 bits (239), Expect = 1e-22
Identities = 42/129 (32%), Positives = 68/129 (52%), Gaps = 4/129 (3%)
Query: 40 NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYED 99
N+ F+ EP QG G + P + Y +++ +C QY+VL ADEV G GRTG+ A +
Sbjct: 222 NVAGFVAEPFQGAGGMIFPPESYWPEIQRICRQYDVLLCADEVIGGFGRTGEWFAHEHFG 281
Query: 100 VRPDIVILGKALSGGLYPISAVLADDEVMGTLVPG----THGSTYGGNPLACKLAMTALD 155
PD + + K L+ G P+ ++ + LV HG TY G+P+A +A+ L
Sbjct: 282 FEPDTLSIAKGLTSGYVPMGGLVLSKRIAEALVEQGGVFAHGLTYSGHPVAAAVAIANLK 341
Query: 156 VILEENMIE 164
+ +E ++
Sbjct: 342 ALRDEGVVT 350
>gnl|CDD|183493 PRK12389, PRK12389, glutamate-1-semialdehyde aminotransferase;
Provisional.
Length = 428
Score = 86.6 bits (215), Expect = 2e-19
Identities = 55/169 (32%), Positives = 79/169 (46%), Gaps = 14/169 (8%)
Query: 23 IPYNDVDAL-EAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADE 81
+P+ND++AL EA K + A +VEPI G G V P G+L+ V L + L I DE
Sbjct: 182 VPFNDIEALKEALDKWGDEVAAVLVEPIVGNFGIVEPKPGFLEAVNELAHEAGALVIYDE 241
Query: 82 VQTGL----GRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGT---LVPG 134
V T G LL + PD+ LGK + GGL PI A ++M L P
Sbjct: 242 VITAFRFMYGGAQDLLGVE-----PDLTALGKIIGGGL-PIGAYGGRKDIMEQVAPLGPA 295
Query: 135 THGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSSPANK 183
T GNP + + L+V+ +E + E ++G + + A K
Sbjct: 296 YQAGTMAGNPASMAAGIACLEVLQQEGVYEKLDRLGAMLEEGILEAAEK 344
>gnl|CDD|234803 PRK00615, PRK00615, glutamate-1-semialdehyde aminotransferase;
Provisional.
Length = 433
Score = 84.5 bits (209), Expect = 1e-18
Identities = 51/165 (30%), Positives = 75/165 (45%), Gaps = 6/165 (3%)
Query: 15 PHMPGYNIIPYNDVDALEAKLKS-NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQY 73
P +PYND + + S + + EPI G V+P G+++ + C +
Sbjct: 175 LAHPLTLSLPYNDFQIFQTVMNSLGHRVAGVIFEPICANMGVVLPKPGFIEGIIQTCRRT 234
Query: 74 NVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVP 133
L I DEV TG R + A V+PDI + GK L GGL P +AV+A +M L P
Sbjct: 235 GSLSIMDEVVTGF-RVAQGGAAAIYHVKPDITVYGKILGGGL-PAAAVVAHKSIMDHLAP 292
Query: 134 -GT--HGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRS 175
GT T GNPLA ++++ E+ + + F S
Sbjct: 293 EGTIFQAGTLSGNPLAMAAGKASINLCREQGFYTQLSTLEQNFLS 337
>gnl|CDD|178100 PLN02482, PLN02482, glutamate-1-semialdehyde 2,1-aminomutase.
Length = 474
Score = 83.6 bits (207), Expect = 3e-18
Identities = 47/134 (35%), Positives = 70/134 (52%), Gaps = 10/134 (7%)
Query: 24 PYNDVDALEAKLKSNPN-ICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEV 82
PYND++A++ ++N I A ++EP+ G +G +VP +L+ +R + + L + DEV
Sbjct: 229 PYNDLEAVKKLFEANKGEIAAVILEPVVGNSGFIVPKKEFLEGLREITKENGALLVFDEV 288
Query: 83 QTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGT---HGST 139
TG R A Y + PD+ LGK + GGL P+ A E+M + P T
Sbjct: 289 MTGF-RIAYGGAQEYFGITPDLTTLGKVIGGGL-PVGAYGGRREIMEMVAPAGPMYQAGT 346
Query: 140 YGGNPLACKLAMTA 153
GNP LAMTA
Sbjct: 347 LSGNP----LAMTA 356
>gnl|CDD|180471 PRK06209, PRK06209, glutamate-1-semialdehyde 2,1-aminomutase;
Provisional.
Length = 431
Score = 80.1 bits (198), Expect = 4e-17
Identities = 52/161 (32%), Positives = 77/161 (47%), Gaps = 23/161 (14%)
Query: 24 PYNDVDALEAKLKSNPN-ICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEV 82
YND+ +LEA + +P I ++EP A A P DG+L +VR LC + LFI DE+
Sbjct: 170 RYNDIASLEALFEDHPGRIACVILEP----ATADEPQDGFLHEVRRLCHENGALFILDEM 225
Query: 83 QTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVM--GT---------- 130
TG R A + PD+ GKAL G + +SA+ E M G
Sbjct: 226 ITGF-RWHMRGAQKLYGIVPDLSCFGKALGNG-FAVSALAGKREYMELGGLEHTDRERVF 283
Query: 131 LVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGE 171
L+ THG+ LA A+ + + +E++IE ++ G
Sbjct: 284 LLSTTHGAETHA--LAA--AIATMAIYRDEDVIERLHEQGA 320
>gnl|CDD|129782 TIGR00699, GABAtrns_euk, 4-aminobutyrate aminotransferase,
eukaryotic type. This enzyme is a class III
pyridoxal-phosphate-dependent aminotransferase. This
model describes known eukaryotic examples of the enzyme.
The degree of sequence difference between this set and
known bacterial examples is greater than the distance
between either set the most similar enzyme with distinct
function, and so separate models are built for
prokaryotic and eukaryotic sets. Alternate names include
GABA transaminase, gamma-amino-N-butyrate transaminase,
and beta-alanine--oxoglutarate aminotransferase [Central
intermediary metabolism, Other].
Length = 464
Score = 73.3 bits (180), Expect = 7e-15
Identities = 53/204 (25%), Positives = 86/204 (42%), Gaps = 13/204 (6%)
Query: 41 ICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDV 100
+ A +VEPIQ E G + +K+R + ++NV FI DEVQTG+G TGK A + ++
Sbjct: 252 VAAIIVEPIQSEGGDNHASPDFFRKLRDITKKHNVAFIVDEVQTGVGATGKFWAHEHWNL 311
Query: 101 R--PDIVILG-KALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVI 157
PD+V K + G + D P +T+ G+P + + I
Sbjct: 312 DDPPDMVTFSKKFQTAGYF------FHDPAFRPNKPYRQFNTWMGDPSRALILREIIQEI 365
Query: 158 LEENMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYD-VC 216
++++EN +G+ + L K + G K T I + D +
Sbjct: 366 KRKDLLENVAHVGDYLYTGLEDLQKKYPEFIQNLRG---KGRGTFIAWDTPDEAKRDKLL 422
Query: 217 IKMKDAGLVTKPISNNIIRLSPAL 240
K ++ G+ IRL P L
Sbjct: 423 KKARNNGVNIGGCGVKAIRLRPML 446
>gnl|CDD|215526 PLN02974, PLN02974, adenosylmethionine-8-amino-7-oxononanoate
transaminase.
Length = 817
Score = 67.4 bits (165), Expect = 9e-13
Identities = 45/137 (32%), Positives = 64/137 (46%), Gaps = 16/137 (11%)
Query: 29 DALEAKLKSNPNICAFMVEP-IQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLG 87
D EA K+ I A ++EP + G G ++ D + + + +C + I DEV TGL
Sbjct: 574 DEYEASAKNGH-IAALIIEPVLHGAGGMLLIDPLFQRALVQVCRSRKIPVIFDEVFTGLW 632
Query: 88 RTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEV----------MGTLVPGTHG 137
R G A +PDI K L+GGL P++A LA +EV L HG
Sbjct: 633 RLGVESAWELLGCKPDIACYAKLLTGGLVPLAATLATEEVFEAFRGPSKLDALL----HG 688
Query: 138 STYGGNPLACKLAMTAL 154
+Y +P+ C A AL
Sbjct: 689 HSYTAHPMGCAAAAKAL 705
>gnl|CDD|180734 PRK06855, PRK06855, aminotransferase; Validated.
Length = 433
Score = 45.3 bits (108), Expect = 1e-05
Identities = 21/67 (31%), Positives = 36/67 (53%), Gaps = 5/67 (7%)
Query: 20 YNIIPYN----DVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNV 75
Y + P N D+D LE K+K NP+I ++ GAV P + L+++ + +Y++
Sbjct: 147 YRLDPENNWYPDLDDLENKVKYNPSIAGILLINPDNPTGAVYPKE-ILREIVDIAREYDL 205
Query: 76 LFIADEV 82
I DE+
Sbjct: 206 FIICDEI 212
>gnl|CDD|99742 cd01494, AAT_I, Aspartate aminotransferase (AAT) superfamily (fold
type I) of pyridoxal phosphate (PLP)-dependent enzymes.
PLP combines with an alpha-amino acid to form a compound
called a Schiff base or aldimine intermediate, which
depending on the reaction, is the substrate in four
kinds of reactions (1) transamination (movement of amino
groups), (2) racemization (redistribution of
enantiomers), (3) decarboxylation (removing COOH
groups), and (4) various side-chain reactions depending
on the enzyme involved. Pyridoxal phosphate (PLP)
dependent enzymes were previously classified into alpha,
beta and gamma classes, based on the chemical
characteristics (carbon atom involved) of the reaction
they catalyzed. The availability of several structures
allowed a comprehensive analysis of the evolutionary
classification of PLP dependent enzymes, and it was
found that the functional classification did not always
agree with the evolutionary history of these enzymes.
Structure and sequence analysis has revealed that the
PLP dependent enzymes can be classified into four major
groups of different evolutionary origin: aspartate
aminotransferase superfamily (fold type I), tryptophan
synthase beta superfamily (fold type II), alanine
racemase superfamily (fold type III), and D-amino acid
superfamily (fold type IV) and Glycogen phophorylase
family (fold type V).
Length = 170
Score = 43.5 bits (103), Expect = 2e-05
Identities = 25/108 (23%), Positives = 39/108 (36%), Gaps = 18/108 (16%)
Query: 17 MPGYNIIPY---------NDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVR 67
+ G +P DV LE PN+ ++ P G +VP LK++R
Sbjct: 61 LAGAKPVPVPVDDAGYGGLDVAILEELKAK-PNVALIVITPNTTSGGVLVP----LKEIR 115
Query: 68 ALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILG--KALSG 113
+ +Y +L + D G + I D+V K L G
Sbjct: 116 KIAKEYGILLLVDAASAGGASPAPGVLIPEG--GADVVTFSLHKNLGG 161
>gnl|CDD|223234 COG0156, BioF, 7-keto-8-aminopelargonate synthetase and related
enzymes [Coenzyme metabolism].
Length = 388
Score = 44.6 bits (106), Expect = 2e-05
Identities = 61/248 (24%), Positives = 89/248 (35%), Gaps = 47/248 (18%)
Query: 26 NDVDALEAKLKSNPNI----CAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADE 81
ND+D LEA L+ + E + G + P L ++ L +Y L DE
Sbjct: 153 NDLDHLEALLEEARENGARRKLIVTEGVFSMDGDIAP----LPELVELAEKYGALLYVDE 208
Query: 82 VQ-TG-LGRTGKLLAIH--YEDVRPDIVI--LGKAL--SGGLYPISAVLADDEVMGTLVP 133
G LG G+ LA H E DI++ LGKAL SGG SA L D L
Sbjct: 209 AHAVGVLGPNGRGLAEHFGLEPEEVDIIVGTLGKALGSSGGYIAGSAALIDY-----LRN 263
Query: 134 GTHGSTYGGN--PLACKLAMTALDVILEENMIENAYKMGEIFRSELSSPANKSKASFKLS 191
+ P A+ AL ++ E R L A ++ K
Sbjct: 264 RARPFIFSTALPPAVAAAALAALRILEEGPER----------RERLQELAAFFRSLLKAL 313
Query: 192 SGGLKKSINTLILSVSAILEVYDVCIKMKDAGLV-----------TKPISNNIIRLSPAL 240
L S + I+ V IL + ++ A L T P +R++
Sbjct: 314 GLVLLPS-ESPIIPV--ILGDEERALEASRALLEEGIYVSAIRPPTVPKGTARLRITLTA 370
Query: 241 NITEQELR 248
TE+++
Sbjct: 371 AHTEEDID 378
>gnl|CDD|129937 TIGR00858, bioF, 8-amino-7-oxononanoate synthase.
7-keto-8-aminopelargonic acid synthetase is an alternate
name. This model represents 8-amino-7-oxononanoate
synthase, the BioF protein of biotin biosynthesis. This
model is based on a careful phylogenetic analysis to
separate members of this family from
2-amino-3-ketobutyrate and other related pyridoxal
phosphate-dependent enzymes. In several species,
including Staphylococcus and Coxiella, a candidate
8-amino-7-oxononanoate synthase is confirmed by location
in the midst of a biotin biosynthesis operon but scores
below the trusted cutoff of this model [Biosynthesis of
cofactors, prosthetic groups, and carriers, Biotin].
Length = 360
Score = 41.1 bits (97), Expect = 4e-04
Identities = 42/176 (23%), Positives = 64/176 (36%), Gaps = 40/176 (22%)
Query: 24 PYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGY---------LKKVRALCSQYN 74
+NDV+ LE L+ N GE ++ DG L ++ AL +Y
Sbjct: 128 RHNDVEHLERLLEKNR-----------GERRKLIVTDGVFSMDGDIAPLPQLVALAERYG 176
Query: 75 VLFIADEVQ-TG-LGRTGKLLAIHY--EDVRPDIVI--LGKAL--SGGLYPISAVLADDE 126
+ D+ TG LG G+ H+ + DI + L KAL G V
Sbjct: 177 AWLMVDDAHGTGVLGEDGRGTLEHFGLKPEPVDIQVGTLSKALGSYGA-----YVAGSQA 231
Query: 127 VMGTLVPGTHGSTY----GGNPLACKLAMTALDVILEEN-MIENAYKMGEIFRSEL 177
++ L+ T P A+ AL++I EE E + R+ L
Sbjct: 232 LIDYLI--NRARTLIFSTALPPAVAAAALAALELIQEEPWRREKLLALIARLRAGL 285
>gnl|CDD|235655 PRK05958, PRK05958, 8-amino-7-oxononanoate synthase; Reviewed.
Length = 385
Score = 40.9 bits (97), Expect = 4e-04
Identities = 37/125 (29%), Positives = 52/125 (41%), Gaps = 32/125 (25%)
Query: 24 PYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPD-----DG---YLKKVRALCSQYNV 75
P+NDVDALEA L +V + DG L ++ AL ++
Sbjct: 151 PHNDVDALEALLAKWRA-----------GRALIVTESVFSMDGDLAPLAELVALARRHGA 199
Query: 76 LFIADEVQ-TG-LGRTGKLLAIHY--EDVRPDIVI--LGKAL--SGGLYPISAVLADDEV 127
+ DE TG LG G+ LA I++ LGKAL SG AVL + +
Sbjct: 200 WLLVDEAHGTGVLGPQGRGLAAEAGLAGEPDVILVGTLGKALGSSGA-----AVLGSETL 254
Query: 128 MGTLV 132
+ L+
Sbjct: 255 IDYLI 259
>gnl|CDD|215756 pfam00155, Aminotran_1_2, Aminotransferase class I and II.
Length = 357
Score = 40.4 bits (95), Expect = 6e-04
Identities = 55/247 (22%), Positives = 88/247 (35%), Gaps = 34/247 (13%)
Query: 26 NDVDALEAKLKSNPNICAFMV-EPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQT 84
D DALEA LK ++ G V + L+K+ L ++N+L + DE
Sbjct: 127 LDFDALEAALKEATEGNKVVLHTSPHNPTGTVATLEE-LEKLLDLAKEHNILLLVDEAYA 185
Query: 85 GLGRTGKL--LAIHYEDVRPDIVI---LGKALSGGLY--PISAVLADDEV---MGTLVPG 134
G P++++ KA GL + +L + V + L
Sbjct: 186 GFVFGSLDAVATRALLAEGPNLLVVGSFSKAF--GLAGWRVGYILGNAAVISQLRKLARP 243
Query: 135 THGSTYGGNPLACKLAMTALDVILE-ENMIENAYKMGEIFRSELSSPANKSKASFKL--S 191
+ ST+ A L V E E M + + + R L A + S
Sbjct: 244 FYSSTHLQ-AAAAAALSDPLLVASELEEMRQRIKERRDYLRDGL------EAAGLSVLPS 296
Query: 192 SGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPISNNI----IRLSPALNITEQEL 247
G L A L + V ++ G+ P S+ +R++ A TE+EL
Sbjct: 297 QAGF---FLLTGLDPEAALALAQVLLEEV--GVYVTPGSSFGGPGWLRITVA-GGTEEEL 350
Query: 248 REGLDII 254
E L+ I
Sbjct: 351 EELLEAI 357
>gnl|CDD|223153 COG0075, COG0075, Serine-pyruvate aminotransferase/archaeal
aspartate aminotransferase [Amino acid transport and
metabolism].
Length = 383
Score = 36.8 bits (86), Expect = 0.008
Identities = 26/100 (26%), Positives = 43/100 (43%), Gaps = 17/100 (17%)
Query: 27 DVDALEAKLKSNPNICAFMVEPIQGE--AGAVVPDDGYLKKVRALCSQYNVLFIADEVQT 84
D + +E L +P+I A V + E G + P LK++ ++ L I D V +
Sbjct: 118 DPEEVEEALDKDPDIKAVAV--VHNETSTGVLNP----LKEIAKAAKEHGALLIVDAV-S 170
Query: 85 GLGRTGKLLAIHYEDVRPDIVILG--KALSG--GLYPISA 120
LG + ++ D+ I G KAL GL ++
Sbjct: 171 SLGGE----PLKVDEWGIDVAITGSQKALGAPPGLAFVAV 206
>gnl|CDD|99747 cd06454, KBL_like, KBL_like; this family belongs to the pyridoxal
phosphate (PLP)-dependent aspartate aminotransferase
superfamily (fold I). The major groups in this CD
corresponds to serine palmitoyltransferase (SPT),
5-aminolevulinate synthase (ALAS),
8-amino-7-oxononanoate synthase (AONS), and
2-amino-3-ketobutyrate CoA ligase (KBL). SPT is
responsible for the condensation of L-serine with
palmitoyl-CoA to produce 3-ketodihydrospingosine, the
reaction of the first step in sphingolipid biosynthesis.
ALAS is involved in heme biosynthesis; it catalyzes the
synthesis of 5-aminolevulinic acid from glycine and
succinyl-coenzyme A. AONS catalyses the decarboxylative
condensation of l-alanine and pimeloyl-CoA in the first
committed step of biotin biosynthesis. KBL catalyzes the
second reaction step of the metabolic degradation
pathway for threonine converting 2-amino-3-ketobutyrate,
to glycine and acetyl-CoA. The members of this CD are
widely found in all three forms of life.
Length = 349
Score = 35.6 bits (83), Expect = 0.019
Identities = 25/105 (23%), Positives = 41/105 (39%), Gaps = 18/105 (17%)
Query: 22 IIPYNDVDALEAKLKSNPN-----ICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVL 76
I +ND++ LE L+ + E + G + P L ++ L +Y +
Sbjct: 111 IFKHNDMEDLEKLLREARRPYGKKLIVT--EGVYSMDGDIAP----LPELVDLAKKYGAI 164
Query: 77 FIADEVQ-TGL-GRTGKLLAIHYEDV-RPDIVI--LGKAL--SGG 114
DE G+ G G+ + DI++ LGKA GG
Sbjct: 165 LFVDEAHSVGVYGPHGRGVEEFGGLTDDVDIIMGTLGKAFGAVGG 209
>gnl|CDD|235893 PRK06939, PRK06939, 2-amino-3-ketobutyrate coenzyme A ligase;
Provisional.
Length = 397
Score = 35.2 bits (82), Expect = 0.029
Identities = 32/105 (30%), Positives = 45/105 (42%), Gaps = 29/105 (27%)
Query: 26 NDVDALEAKLKSNPNICAFMVEPIQGEAGA----VVPD-----DGY---LKKVRALCSQY 73
ND+ LEA+LK EAGA + D DG L ++ L +Y
Sbjct: 156 NDMADLEAQLKEA------------KEAGARHKLIATDGVFSMDGDIAPLPEICDLADKY 203
Query: 74 NVLFIADEVQ-TG-LGRTGKLLAIHYE-DVRPDIVI--LGKALSG 113
+ L + D+ G +G G+ H+ R DI+ LGKAL G
Sbjct: 204 DALVMVDDSHAVGFVGENGRGTVEHFGVMDRVDIITGTLGKALGG 248
>gnl|CDD|130881 TIGR01822, 2am3keto_CoA, 2-amino-3-ketobutyrate coenzyme A ligase.
This model represents a narrowly defined clade of animal
and bacterial (almost exclusively Proteobacterial)
2-amino-3-ketobutyrate--CoA ligase. This enzyme can act
in threonine catabolism. The closest homolog from
Bacillus subtilis, and sequences like it, may be
functionally equivalent but were not included in the
model because of difficulty in finding reports of
function [Energy metabolism, Amino acids and amines].
Length = 393
Score = 34.4 bits (79), Expect = 0.050
Identities = 33/100 (33%), Positives = 44/100 (44%), Gaps = 15/100 (15%)
Query: 26 NDVDALEAKLK-SNPNICAFMVEPIQGEAGAVVPDDGY---LKKVRALCSQYNVLFIADE 81
ND+ LEA+LK + + G V DG L ++ L +Y+ L + DE
Sbjct: 152 NDMADLEAQLKEARAAGARHRLIATDG----VFSMDGVIAPLDEICDLADKYDALVMVDE 207
Query: 82 VQ-TG-LGRTGKLLAIHYEDV--RPDIV--ILGKALSGGL 115
TG LG TG+ V R DI+ LGKAL G
Sbjct: 208 CHATGFLGPTGRGSH-ELCGVMGRVDIITGTLGKALGGAS 246
>gnl|CDD|233587 TIGR01821, 5aminolev_synth, 5-aminolevulinic acid synthase. This
model represents 5-aminolevulinic acid synthase, an
enzyme for one of two routes to the heme precursor
5-aminolevulinate. The protein is a pyridoxal
phosphate-dependent enzyme related to
2-amino-3-ketobutyrate CoA tranferase and
8-amino-7-oxononanoate synthase. This enzyme appears
restricted to the alpha Proteobacteria and mitochondrial
derivatives [Biosynthesis of cofactors, prosthetic
groups, and carriers, Heme, porphyrin, and cobalamin].
Length = 402
Score = 33.2 bits (76), Expect = 0.11
Identities = 37/115 (32%), Positives = 50/115 (43%), Gaps = 19/115 (16%)
Query: 22 IIPYNDVDALEAKLKSN----PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLF 77
I +NDV LE L+S P I AF E + G + P ++++ L +Y L
Sbjct: 157 IFRHNDVAHLEKLLQSVDPNRPKIIAF--ESVYSMDGDIAP----IEEICDLADKYGALT 210
Query: 78 IADEVQT-GL-GRTGKLLAIHYEDV--RPDIV--ILGKALS--GGLYPISAVLAD 124
DEV GL G G +A + + R DI+ L KA GG S L D
Sbjct: 211 YLDEVHAVGLYGPRGGGIAER-DGLMHRIDIIEGTLAKAFGVVGGYIAASRKLID 264
>gnl|CDD|102071 PRK05937, PRK05937, 8-amino-7-oxononanoate synthase; Provisional.
Length = 370
Score = 32.8 bits (75), Expect = 0.18
Identities = 27/96 (28%), Positives = 43/96 (44%), Gaps = 12/96 (12%)
Query: 24 PYNDVDALEAKLKSNPNICA----FMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIA 79
+ND+D LE+ L+S V + G + P L+++ AL +Y+ I
Sbjct: 123 RHNDLDHLESLLESCRQRSFGRIFIFVCSVYSFKGTLAP----LEQIIALSKKYHAHLIV 178
Query: 80 DEVQT-GL-GRTGKLL--AIHYEDVRPDIVILGKAL 111
DE G+ G GK ++ YE+ +V KAL
Sbjct: 179 DEAHAMGIFGDDGKGFCHSLGYENFYAVLVTYSKAL 214
>gnl|CDD|216367 pfam01212, Beta_elim_lyase, Beta-eliminating lyase.
Length = 288
Score = 30.7 bits (70), Expect = 0.62
Identities = 13/55 (23%), Positives = 26/55 (47%), Gaps = 7/55 (12%)
Query: 27 DVDALEAKLK-----SNPNICAFMVEPIQGEA-GAVVPDDGYLKKVRALCSQYNV 75
D++ LEA ++ P +E A G VV + L+++RA+ ++ +
Sbjct: 110 DLEDLEAAIRPVGDIHFPPTGLISLENTHNSAGGQVVSLE-ELREIRAIAREHGI 163
>gnl|CDD|224090 COG1168, MalY, Bifunctional PLP-dependent enzyme with
beta-cystathionase and maltose regulon repressor
activities [Amino acid transport and metabolism].
Length = 388
Score = 30.7 bits (70), Expect = 0.76
Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
Query: 27 DVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEV 82
D DALE + F++ G V + L+K+ LC ++ V I+DE+
Sbjct: 146 DFDALEKAFVD-ERVKLFILCNPHNPTGRVWTKE-ELRKIAELCLRHGVRVISDEI 199
>gnl|CDD|227766 COG5479, COG5479, Uncharacterized protein potentially involved in
peptidoglycan biosynthesis [Cell envelope biogenesis,
outer membrane].
Length = 556
Score = 30.5 bits (69), Expect = 0.97
Identities = 13/36 (36%), Positives = 16/36 (44%)
Query: 107 LGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGG 142
LG ALS P L + + GT P + GS Y
Sbjct: 156 LGGALSWLGPPTEGELNNPDGYGTRQPFSGGSIYWH 191
>gnl|CDD|99734 cd00609, AAT_like, Aspartate aminotransferase family. This family
belongs to pyridoxal phosphate (PLP)-dependent aspartate
aminotransferase superfamily (fold I). Pyridoxal
phosphate combines with an alpha-amino acid to form a
compound called a Schiff base or aldimine intermediate,
which depending on the reaction, is the substrate in
four kinds of reactions (1) transamination (movement of
amino groups), (2) racemization (redistribution of
enantiomers), (3) decarboxylation (removing COOH
groups), and (4) various side-chain reactions depending
on the enzyme involved. Pyridoxal phosphate (PLP)
dependent enzymes were previously classified into alpha,
beta and gamma classes, based on the chemical
characteristics (carbon atom involved) of the reaction
they catalyzed. The availability of several structures
allowed a comprehensive analysis of the evolutionary
classification of PLP dependent enzymes, and it was
found that the functional classification did not always
agree with the evolutionary history of these enzymes.
The major groups in this CD corresponds to Aspartate
aminotransferase a, b and c, Tyrosine, Alanine,
Aromatic-amino-acid, Glutamine phenylpyruvate,
1-Aminocyclopropane-1-carboxylate synthase,
Histidinol-phosphate, gene products of malY and cobC,
Valine-pyruvate aminotransferase and Rhizopine
catabolism regulatory protein.
Length = 350
Score = 30.0 bits (68), Expect = 1.2
Identities = 35/197 (17%), Positives = 64/197 (32%), Gaps = 28/197 (14%)
Query: 3 ITTDPTSYNEFGPHMP-----GYNIIPYN-------DVDALEAKLKSNPNICAFMVEPIQ 50
+ DPT + + G ++P +D + P +
Sbjct: 87 LVPDPT----YPGYEAAARLAGAEVVPVPLDEEGGFLLDLELLEAAKTPKTKLLYLNNPN 142
Query: 51 GEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVI---- 106
GAV+ ++ L+++ L ++ +L I+DE L G+ + VI
Sbjct: 143 NPTGAVLSEE-ELEELAELAKKHGILIISDEAYAELVYDGEPPPALALLDAYERVIVLRS 201
Query: 107 LGKALS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTAL----DVILEEN 161
K GL I ++A E + + T G + A A + LEE
Sbjct: 202 FSKTFGLPGLR-IGYLIAPPEELLERLKKLLPYTTSGPSTLSQAAAAAALDDGEEHLEE- 259
Query: 162 MIENAYKMGEIFRSELS 178
+ E + + L
Sbjct: 260 LRERYRRRRDALLEALK 276
>gnl|CDD|182155 PRK09936, PRK09936, hypothetical protein; Provisional.
Length = 296
Score = 29.8 bits (67), Expect = 1.6
Identities = 14/55 (25%), Positives = 22/55 (40%), Gaps = 2/55 (3%)
Query: 140 YGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSSPANKSKASFKLSSGG 194
Y L C+ + A ++ E + G+ F +E PA + K SS G
Sbjct: 224 YLQASLDCQSSAPASGIVYE--LFRQVSGKGKPFTAEPKPPAEIASLLAKRSSCG 276
>gnl|CDD|215829 pfam00266, Aminotran_5, Aminotransferase class-V. This domain is
found in amino transferases, and other enzymes including
cysteine desulphurase EC:4.4.1.-.
Length = 370
Score = 29.1 bits (66), Expect = 2.2
Identities = 15/58 (25%), Positives = 24/58 (41%), Gaps = 6/58 (10%)
Query: 27 DVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQT 84
D+DALE L + A + G V P ++++ L +Y L + D Q
Sbjct: 128 DLDALEKLLTPRTKLVAIT--HVSNVTGTVNP----VEEIGKLAHEYGALVVVDAAQA 179
>gnl|CDD|224252 COG1333, ResB, ResB protein required for cytochrome c biosynthesis
[Posttranslational modification, protein turnover,
chaperones].
Length = 478
Score = 28.9 bits (65), Expect = 2.9
Identities = 9/43 (20%), Positives = 17/43 (39%), Gaps = 3/43 (6%)
Query: 104 IVILGKALSGGLYP---ISAVLADDEVMGTLVPGTHGSTYGGN 143
++IL AL Y + ++ D E + +P + G
Sbjct: 157 LIILVGALLDFFYEGMVVGEIVPDGETNCSALPAANDKFRAGP 199
>gnl|CDD|178257 PLN02651, PLN02651, cysteine desulfurase.
Length = 364
Score = 28.9 bits (65), Expect = 3.2
Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 10/66 (15%)
Query: 27 DVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGL 86
D+D L A ++ P+ V + E G + P ++++ LC + VLF D Q
Sbjct: 127 DLDELAAAIR--PDTALVSVMAVNNEIGVIQP----VEEIGELCREKKVLFHTDAAQA-- 178
Query: 87 GRTGKL 92
GK+
Sbjct: 179 --VGKI 182
>gnl|CDD|235054 PRK02615, PRK02615, thiamine-phosphate pyrophosphorylase;
Provisional.
Length = 347
Score = 28.3 bits (64), Expect = 4.2
Identities = 8/15 (53%), Positives = 11/15 (73%)
Query: 64 KKVRALCSQYNVLFI 78
KK++ LC +Y LFI
Sbjct: 191 KKLKELCHRYGALFI 205
>gnl|CDD|226655 COG4192, COG4192, Signal transduction histidine kinase regulating
phosphoglycerate transport system [Signal transduction
mechanisms].
Length = 673
Score = 28.4 bits (63), Expect = 5.5
Identities = 14/61 (22%), Positives = 25/61 (40%), Gaps = 2/61 (3%)
Query: 140 YGGNPLACKLAMTALDVI--LEENMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKK 197
G N L+ + + D I E +I + K+ E FR+ S S+ G ++
Sbjct: 271 IGHNDLSHPITVDGRDEIGAQSEQLILYSKKVEEAFRTNALSQIGNSQQQLITCDGQIES 330
Query: 198 S 198
+
Sbjct: 331 A 331
>gnl|CDD|184024 PRK13393, PRK13393, 5-aminolevulinate synthase; Provisional.
Length = 406
Score = 28.1 bits (63), Expect = 5.5
Identities = 16/65 (24%), Positives = 27/65 (41%), Gaps = 10/65 (15%)
Query: 22 IIPYNDVDALEAKLKS----NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLF 77
I +ND LE KL P + AF E + G + P + ++ + ++ +
Sbjct: 157 IFRHNDPADLERKLSDLDPHRPKLVAF--ESVYSMDGDIAP----IAEICDVAEKHGAMT 210
Query: 78 IADEV 82
DEV
Sbjct: 211 YLDEV 215
>gnl|CDD|205399 pfam13218, DUF4026, Protein of unknown function (DUF4026). This
family of proteins is functionally uncharacterized. This
family of proteins is found in bacteria. Proteins in
this family are approximately 450 amino acids in length.
The family is found in association with pfam10077.
Length = 323
Score = 27.8 bits (62), Expect = 5.6
Identities = 44/167 (26%), Positives = 66/167 (39%), Gaps = 33/167 (19%)
Query: 18 PGYNIIPYNDVDALEAKLKSNPNIC--AFMVEPIQGEAGAVVPDDGYLKKVRAL-CSQYN 74
P Y I PY D + +L + N VE + P YL++++ L +
Sbjct: 67 PEYEINPYFRTDPISPELLAEANAATQEIFVETLFQGD----PLASYLQQLKFLQILAPD 122
Query: 75 VLFIADEVQTGLGRTGKLLAIHYE-DVRPDIVILGKALSGGLYPISAVLADDEVMGTLVP 133
+L D G T + L E D+ PDI LY I AV DE P
Sbjct: 123 LLLGLDISAAGKVFTREWLNFQLEDDLMPDI--------ESLYVIHAVYDTDENGE---P 171
Query: 134 G-----THGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRS 175
THG LA + +T ++I+ N I + Y + ++FR+
Sbjct: 172 TMYWFHTHG-------LA-RCGLTEAELIIP-NPISSYYGIPDLFRT 209
>gnl|CDD|234590 PRK00043, thiE, thiamine-phosphate pyrophosphorylase; Reviewed.
Length = 212
Score = 27.5 bits (62), Expect = 6.9
Identities = 5/18 (27%), Positives = 10/18 (55%)
Query: 63 LKKVRALCSQYNVLFIAD 80
+ ++ LC +Y V I +
Sbjct: 54 ARALKELCRRYGVPLIVN 71
>gnl|CDD|223513 COG0436, COG0436, Aspartate/tyrosine/aromatic aminotransferase
[Amino acid transport and metabolism].
Length = 393
Score = 27.6 bits (62), Expect = 7.3
Identities = 9/29 (31%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Query: 54 GAVVPDDGYLKKVRALCSQYNVLFIADEV 82
GAV + LK + L +++++ I+DE+
Sbjct: 177 GAVYSKE-ELKAIVELAREHDIIIISDEI 204
>gnl|CDD|226974 COG4626, COG4626, Phage terminase-like protein, large subunit
[General function prediction only].
Length = 546
Score = 27.7 bits (62), Expect = 7.3
Identities = 10/32 (31%), Positives = 17/32 (53%)
Query: 219 MKDAGLVTKPISNNIIRLSPALNITEQELREG 250
+ +AG+ I +LS A+ E++L EG
Sbjct: 445 LAEAGIKVVGIPQGFKKLSGAIKTIERKLAEG 476
>gnl|CDD|235465 PRK05437, PRK05437, isopentenyl pyrophosphate isomerase;
Provisional.
Length = 352
Score = 27.4 bits (62), Expect = 7.5
Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 4/44 (9%)
Query: 61 GYLKKVRALCSQYNVLFIADEVQTGLGR-TGKLLA---IHYEDV 100
G+L + + S V I EV G+ + T K LA + DV
Sbjct: 173 GWLDNIAEIVSALPVPVIVKEVGFGISKETAKRLADAGVKAIDV 216
>gnl|CDD|233289 TIGR01140, L_thr_O3P_dcar, L-threonine-O-3-phosphate decarboxylase.
This family contains pyridoxal phosphate-binding class
II aminotransferases (see pfam00222) closely related to,
yet distinct from, histidinol-phosphate aminotransferase
(HisC). It is found in cobalamin biosynthesis operons in
Salmonella typhimurium and Bacillus halodurans (each of
which also has HisC) and has been shown to have
L-threonine-O-3-phosphate decarboxylase activity in
Salmonella. Although the gene symbol cobD was assigned
in Salmonella, cobD in other contexts refers to a
different cobalamin biosynthesis enzyme, modeled by
pfam03186 and called cbiB in Salmonella [Biosynthesis of
cofactors, prosthetic groups, and carriers, Heme,
porphyrin, and cobalamin].
Length = 330
Score = 27.5 bits (62), Expect = 7.7
Identities = 18/82 (21%), Positives = 31/82 (37%), Gaps = 20/82 (24%)
Query: 9 SYNEFGPH--MPGYNIIPYNDVDALEAKLKS-------NPNICAFMVEPIQGEAGAVVPD 59
+Y+E+ G+ ++ D+D L A L+ NPN P G ++P
Sbjct: 95 TYSEYARAWRAAGHEVVELPDLDRLPAALEEADLLVVCNPN------NP----TGRLIPP 144
Query: 60 DGYLKKVRALCSQYNVLFIADE 81
+ L + A + DE
Sbjct: 145 E-TLLALAARLRARGGWLVVDE 165
>gnl|CDD|233094 TIGR00693, thiE, thiamine-phosphate pyrophosphorylase. This
model represents the thiamine-phosphate
pyrophosphorylase, ThiE, of a number of bacteria, and
N-terminal domains of bifunctional thiamine proteins of
Saccharomyces cerevisiae and Schizosaccharomyces pombe,
in which the C-terminal domain corresponds to the
bacterial hydroxyethylthiazole kinase (EC 2.7.1.50),
ThiM. This model includes ThiE from Bacillus subtilis
but excludes its paralog, the regulatory protein TenI ,
and neighbors of TenI [Biosynthesis of cofactors,
prosthetic groups, and carriers, Thiamine].
Length = 196
Score = 26.8 bits (60), Expect = 8.7
Identities = 7/15 (46%), Positives = 11/15 (73%)
Query: 64 KKVRALCSQYNVLFI 78
+K++ LC +Y V FI
Sbjct: 47 EKLQELCRRYGVPFI 61
>gnl|CDD|188123 TIGR01265, tyr_nico_aTase, tyrosine/nicotianamine family
aminotransferase. This subfamily of pyridoxal
phosphate-dependent enzymes includes known examples of
both tyrosine aminotransferase from animals and
nicotianamine aminotransferase from barley.
Length = 403
Score = 27.3 bits (61), Expect = 9.1
Identities = 17/67 (25%), Positives = 33/67 (49%), Gaps = 7/67 (10%)
Query: 20 YNIIPYN----DVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNV 75
Y+++P D+D LE+ L + ++ P G+V D +L+K+ + + +
Sbjct: 147 YDLLPEKDWEIDLDGLES-LADEKTVAIVVINP-SNPCGSVFSRD-HLQKIAEVAEKLGI 203
Query: 76 LFIADEV 82
IADE+
Sbjct: 204 PIIADEI 210
>gnl|CDD|99744 cd06451, AGAT_like, Alanine-glyoxylate aminotransferase (AGAT)
family. This family belongs to pyridoxal phosphate
(PLP)-dependent aspartate aminotransferase superfamily
(fold I). The major groups in this CD correspond to
alanine-glyoxylate aminotransferase (AGAT),
serine-glyoxylate aminotransferase (SGAT), and
3-hydroxykynurenine transaminase (HKT). AGAT is a
homodimeric protein, which catalyses the transamination
of glyoxylate to glycine, and SGAT converts serine and
glyoxylate to hydroxypyruvate and glycine. HKT catalyzes
the PLP-dependent transamination of 3-hydroxykynurenine,
a potentially toxic metabolite of the kynurenine
pathway.
Length = 356
Score = 27.3 bits (61), Expect = 9.2
Identities = 24/105 (22%), Positives = 38/105 (36%), Gaps = 28/105 (26%)
Query: 27 DVDALEAKLKSNPNICAFMVEPIQGEA--GAVVPDDGYLKKVRALCSQYNVLFIADEVQT 84
+ + L+ + + E G + P L+ + AL +++ L I D V +
Sbjct: 112 SPEEIAEALEQHDIKAVTLT---HNETSTGVLNP----LEGIGALAKKHDALLIVDAV-S 163
Query: 85 GLGRTGKLLAIHYEDVRP-----DIVILG--KALSG--GLYPISA 120
LG E R D+ G KAL GL PI+
Sbjct: 164 SLGG---------EPFRMDEWGVDVAYTGSQKALGAPPGLGPIAF 199
>gnl|CDD|223936 COG1004, Ugd, Predicted UDP-glucose 6-dehydrogenase [Cell envelope
biogenesis, outer membrane].
Length = 414
Score = 27.2 bits (61), Expect = 9.4
Identities = 12/33 (36%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Query: 223 GLVTKPISNNIIRLSPALNITEQELREGLDIII 255
GL KP ++++ R SPAL+I ++ +G ++I
Sbjct: 317 GLAFKPNTDDM-RESPALDIIKRLQEKGAEVIA 348
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.316 0.135 0.382
Gapped
Lambda K H
0.267 0.0666 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 13,624,542
Number of extensions: 1321624
Number of successful extensions: 1461
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1303
Number of HSP's successfully gapped: 166
Length of query: 266
Length of database: 10,937,602
Length adjustment: 95
Effective length of query: 171
Effective length of database: 6,723,972
Effective search space: 1149799212
Effective search space used: 1149799212
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.3 bits)