RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6547
(266 letters)
>2oat_A Ornithine aminotransferase; 5-fluoromethylornithine, PLP-dependent
ENZ pyridoxal phosphate; HET: PFM; 1.95A {Homo sapiens}
SCOP: c.67.1.4 PDB: 1oat_A* 2byj_A* 2byl_A* 1gbn_A*
2can_A*
Length = 439
Score = 370 bits (951), Expect = e-128
Identities = 145/258 (56%), Positives = 190/258 (73%), Gaps = 8/258 (3%)
Query: 4 TTDPTSYNEFGPHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYL 63
+TDPTSY+ FGP MPG++IIPYND+ ALE L +PN+ AFMVEPIQGEAG VVPD GYL
Sbjct: 188 STDPTSYDGFGPFMPGFDIIPYNDLPALERAL-QDPNVAAFMVEPIQGEAGVVVPDPGYL 246
Query: 64 KKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLA 123
VR LC+++ VLFIADE+QTGL RTG+ LA+ YE+VRPDIV+LGKALSGGLYP+SAVL
Sbjct: 247 MGVRELCTRHQVLFIADEIQTGLARTGRWLAVDYENVRPDIVLLGKALSGGLYPVSAVLC 306
Query: 124 DDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSSPANK 183
DD++M T+ PG HGSTYGGNPL C++A+ AL+V+ EEN+ ENA K+G I R+EL +
Sbjct: 307 DDDIMLTIKPGEHGSTYGGNPLGCRVAIAALEVLEEENLAENADKLGIILRNELMKLPSD 366
Query: 184 SKASFKLSSG-GLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNI 242
G GL +N +++ + + + VC++++D GL+ KP +IIR +P L I
Sbjct: 367 ---VVTAVRGKGL---LNAIVIKETKDWDAWKVCLRLRDNGLLAKPTHGDIIRFAPPLVI 420
Query: 243 TEQELREGLDIIINTINT 260
E ELRE ++II TI +
Sbjct: 421 KEDELRESIEIINKTILS 438
>1z7d_A Ornithine aminotransferase; structural genomics consortium, SGC,
malaria; 2.10A {Plasmodium yoelii yoelii} SCOP: c.67.1.4
PDB: 3lg0_A 3ntj_A
Length = 433
Score = 368 bits (946), Expect = e-127
Identities = 125/262 (47%), Positives = 180/262 (68%), Gaps = 7/262 (2%)
Query: 4 TTDPTSYNEFGPHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYL 63
+T + FGP P ++ +PY+D++ALE +LK +PN+CAF+VEPIQGEAG +VP D YL
Sbjct: 177 STTKKCTSNFGPFAPQFSKVPYDDLEALEEELK-DPNVCAFIVEPIQGEAGVIVPSDNYL 235
Query: 64 KKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLA 123
+ V +C +YNVLF+ADEVQTGLGRTGKLL +H+ +V+PD+++LGKALSGG YPISAVLA
Sbjct: 236 QGVYDICKKYNVLFVADEVQTGLGRTGKLLCVHHYNVKPDVILLGKALSGGHYPISAVLA 295
Query: 124 DDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSSPANK 183
+D++M + PG HGSTYGGNPLA + + AL+V++ E + ENA K+G F L
Sbjct: 296 NDDIMLVIKPGEHGSTYGGNPLAASICVEALNVLINEKLCENAEKLGGPFLENLKRELKD 355
Query: 184 SKASFKLSSG-GLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNI 242
SK + G GL + + + V D+C+K+K+ GL+T+ + + IRL+P L I
Sbjct: 356 SKI-VRDVRGKGL---LCAIEFKNELV-NVLDICLKLKENGLITRDVHDKTIRLTPPLCI 410
Query: 243 TEQELREGLDIIINTINTMAAK 264
T+++L E +II+ T+ +
Sbjct: 411 TKEQLDECTEIIVKTVKFFDER 432
>3ruy_A Ornithine aminotransferase; structural genomics, csgid, center for
structural genomics O infectious diseases, alpha and
beta protein; HET: LLP; 2.65A {Bacillus anthracis}
Length = 392
Score = 365 bits (939), Expect = e-127
Identities = 105/257 (40%), Positives = 159/257 (61%), Gaps = 13/257 (5%)
Query: 4 TTDPTSYNEFGPHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYL 63
+++ FGP +PG +IPY D++AL+A + PN AF++EPIQGEAG +P G+L
Sbjct: 148 SSNEEYKRGFGPMLPGIIVIPYGDLEALKAAI--TPNTAAFILEPIQGEAGINIPPAGFL 205
Query: 64 KKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLA 123
K+ +C + NVLF+ADE+QTGLGRTGK+ A +++V PD+ ILGKAL GG++PIS A
Sbjct: 206 KEALEVCKKENVLFVADEIQTGLGRTGKVFACDWDNVTPDMYILGKALGGGVFPISCAAA 265
Query: 124 DDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSSPANK 183
+ +++G PG+HGST+GGNPLAC +++ AL+V+ EE + E + ++GE +L N
Sbjct: 266 NRDILGVFEPGSHGSTFGGNPLACAVSIAALEVLEEEKLTERSLQLGEKLVGQLKEIDNP 325
Query: 184 SKASFKLSSG-GLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNI 242
G GL + L+ A C ++K AGL+ K N+IR++P L I
Sbjct: 326 ---MITEVRGKGL---FIGIELNEPA----RPYCEQLKAAGLLCKETHENVIRIAPPLVI 375
Query: 243 TEQELREGLDIIINTIN 259
+E++L I ++
Sbjct: 376 SEEDLEWAFQKIKAVLS 392
>1vef_A Acetylornithine/acetyl-lysine aminotransferase; PLP, riken
structural genomics/proteomics initiative, RSGI,
structural genomics; HET: PLP; 1.35A {Thermus
thermophilus} SCOP: c.67.1.4 PDB: 1wkg_A* 1wkh_A*
Length = 395
Score = 269 bits (689), Expect = 3e-89
Identities = 70/244 (28%), Positives = 120/244 (49%), Gaps = 15/244 (6%)
Query: 13 FGPHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQ 72
F P + IPYNDV+AL+ + + A ++EP+QGE G +L+ R + +
Sbjct: 160 FLPLVEPVEFIPYNDVEALKRAV--DEETAAVILEPVQGEGGVRPATPEFLRAAREITQE 217
Query: 73 YNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLV 132
L I DE+QTG+GRTGK A + + PDI+ L KAL GG+ P+ + +EV ++
Sbjct: 218 KGALLILDEIQTGMGRTGKRFAFEHFGIVPDILTLAKALGGGV-PLGVAVMREEVARSMP 276
Query: 133 PGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSSPANKSKASFKLSS 192
G HG+T+GGNPLA + A+ + + E A ++G F +L + + +
Sbjct: 277 KGGHGTTFGGNPLAMAAGVAAIRYLERTRLWERAAELGPWFMEKLRAIPSP---KIREVR 333
Query: 193 G-GLKKSINTLILSVSAILEVYDVCIK-MKDAGLVTKPISNNIIRLSPALNITEQELREG 250
G G L++ + + + K+ ++ +IR P L I +++L
Sbjct: 334 GMG-------LMVGLELKEKAAPYIARLEKEHRVLALQAGPTVIRFLPPLVIEKEDLERV 386
Query: 251 LDII 254
++ +
Sbjct: 387 VEAV 390
>2pb2_A Acetylornithine/succinyldiaminopimelate aminotran; ARGD, pyridoxal
5'-phosphate, arginine metabolism, lysine biosynthesis,
gabaculine; HET: PLP; 1.91A {Salmonella typhimurium}
PDB: 2pb0_A*
Length = 420
Score = 265 bits (681), Expect = 9e-88
Identities = 81/251 (32%), Positives = 127/251 (50%), Gaps = 6/251 (2%)
Query: 13 FGPHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQ 72
FGP +P+ND+ A++A + + + CA +VEPIQGE G +LK +R LC +
Sbjct: 176 FGPKPADIIHVPFNDLHAVKAVM--DDHTCAVVVEPIQGEGGVQAATPEFLKGLRDLCDE 233
Query: 73 YNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLV 132
+ L + DEVQ G+GRTG L A + V PDI+ KAL GG P+SA+L E+
Sbjct: 234 HQALLVFDEVQCGMGRTGDLFAYMHYGVTPDILTSAKALGGGF-PVSAMLTTQEIASAFH 292
Query: 133 PGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSSPANKSKASFKLSS 192
G+HGSTYGGNPLAC +A A D+I +++ + + F L + + +
Sbjct: 293 VGSHGSTYGGNPLACAVAGAAFDIINTPEVLQGIHTKRQQFVQHLQAIDEQFDIFSDIRG 352
Query: 193 GGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLD 252
GL + L D +AG++ +++R +P+L + E ++ EG+
Sbjct: 353 MGL---LIGAELKPKYKGRARDFLYAGAEAGVMVLNAGADVMRFAPSLVVEEADIHEGMQ 409
Query: 253 IIINTINTMAA 263
+ + A
Sbjct: 410 RFAQAVGKVVA 420
>2eh6_A Acoat, acetylornithine aminotransferase; ARGD, structural genomics,
NPPSFA, national project on prote structural and
functional analyses; HET: PLP; 1.90A {Aquifex aeolicus}
Length = 375
Score = 252 bits (647), Expect = 4e-83
Identities = 76/246 (30%), Positives = 132/246 (53%), Gaps = 17/246 (6%)
Query: 13 FGPHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQ 72
F P +PG++ ND+D++ L + ++E IQGE G + +L K++ +C +
Sbjct: 147 FEPLVPGFSYAKLNDIDSVYKLL--DEETAGIIIEVIQGEGGVNEASEDFLSKLQEICKE 204
Query: 73 YNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLV 132
+VL I DEVQTG+GRTG+ A + +++PD++ L K L GG+ PI A+LA +EV +
Sbjct: 205 KDVLLIIDEVQTGIGRTGEFYAYQHFNLKPDVIALAKGLGGGV-PIGAILAREEVAQSFT 263
Query: 133 PGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSSPANKSKASFKLSS 192
PG+HGST+GGNPLAC+ +D + E ++ + ++G F+ +L K+
Sbjct: 264 PGSHGSTFGGNPLACRAGTVVVDEV--EKLLPHVREVGNYFKEKLKELGKG-----KVKG 316
Query: 193 GGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLD 252
G L+L + E D +K + GL+ + ++R P L I ++ + +
Sbjct: 317 RG-------LMLGLELERECKDYVLKALEKGLLINCTAGKVLRFLPPLIIQKEHIDRAIS 369
Query: 253 IIINTI 258
++ +
Sbjct: 370 VLREIL 375
>3nx3_A Acoat, acetylornithine aminotransferase; csgid, structural
genomics, center for structural genomics O infectious
diseases; 1.80A {Campylobacter jejuni subsp}
Length = 395
Score = 253 bits (648), Expect = 5e-83
Identities = 74/248 (29%), Positives = 120/248 (48%), Gaps = 11/248 (4%)
Query: 13 FGPHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQ 72
F P + G YND+ ++E + N CA ++E +QGE G + + K +R LC +
Sbjct: 154 FKPLISGVKFAKYNDISSVEKLV--NEKTCAIILESVQGEGGINPANKDFYKALRKLCDE 211
Query: 73 YNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEV-MGTL 131
++L IADE+Q G+GR+GK A + + PDI+ KAL GL + A + + +V +L
Sbjct: 212 KDILLIADEIQCGMGRSGKFFAYEHAQILPDIMTSAKALGCGL-SVGAFVINQKVASNSL 270
Query: 132 VPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSSPANKSKASFKLS 191
G HGSTYGGNPL C ++ EE ++EN K+ L N+ K
Sbjct: 271 EAGDHGSTYGGNPLVCAGVNAVFEIFKEEKILENVNKLTPYLEQSLDELINEFDFCKKRK 330
Query: 192 SGGLKKSINTLI-LSVSAILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREG 250
G + LS+ ++V V K ++ L+ N +R P L + ++ + E
Sbjct: 331 GLGF------MQGLSLDKSVKVAKVIQKCQENALLLISCGENDLRFLPPLILQKEHIDEM 384
Query: 251 LDIIINTI 258
+ + +
Sbjct: 385 SEKLRKAL 392
>2ord_A Acoat, acetylornithine aminotransferase; TM1785, acetylornithine
aminotransferase (EC 2.6.1.11) (ACOA structural
genomics; HET: MSE PLP; 1.40A {Thermotoga maritima MSB8}
PDB: 2e54_A*
Length = 397
Score = 252 bits (646), Expect = 1e-82
Identities = 79/250 (31%), Positives = 128/250 (51%), Gaps = 11/250 (4%)
Query: 13 FGPHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQ 72
F P +PG+ +N+V+ L K+ + ++CA +EPIQGE+G V +L++ R LC +
Sbjct: 158 FEPLVPGFEYFEFNNVEDLRRKM--SEDVCAVFLEPIQGESGIVPATKEFLEEARKLCDE 215
Query: 73 YNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLV 132
Y+ L + DEVQ G+GRTGKL A V PD++ K L GG+ PI AV+ ++ L
Sbjct: 216 YDALLVFDEVQCGMGRTGKLFAYQKYGVVPDVLTTAKGLGGGV-PIGAVIVNERA-NVLE 273
Query: 133 PGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSSPANKSKASFKLSS 192
PG HG+T+GGNPLAC+ +T + + +E +E + G +L + +
Sbjct: 274 PGDHGTTFGGNPLACRAGVTVIKELTKEGFLEEVEEKGNYLMKKLQEMKEEYDVVADVRG 333
Query: 193 GGLKKSINTLI-LSVSAILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGL 251
GL +I + + +V K + L+ P NN IR P L + E+ +
Sbjct: 334 MGL------MIGIQFREEVSNREVATKCFENKLLVVPAGNNTIRFLPPLTVEYGEIDLAV 387
Query: 252 DIIINTINTM 261
+ + + +
Sbjct: 388 ETLKKVLQGI 397
>1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A
{Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A*
1szu_A* 1szs_A*
Length = 426
Score = 241 bits (618), Expect = 4e-78
Identities = 75/281 (26%), Positives = 133/281 (47%), Gaps = 36/281 (12%)
Query: 1 MLITTDPTSYNE-FGPHMPGYNIIPY----------NDVDALEAKLKS---NPNICAFMV 46
+ +T Y+ G Y + + ++ K+ +I A ++
Sbjct: 146 LALTGKVNPYSAGMGLMPGHVYRALYPCPLHGISEDDAIASIHRIFKNDAAPEDIAAIVI 205
Query: 47 EPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVI 106
EP+QGE G +++++RALC ++ ++ IADEVQ+G GRTG L A+ V PD+
Sbjct: 206 EPVQGEGGFYASSPAFMQRLRALCDEHGIMLIADEVQSGAGRTGTLFAMEQMGVAPDLTT 265
Query: 107 LGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENA 166
K+++GG P++ V EVM + PG G TY GNP+AC A+ L V +EN+++ A
Sbjct: 266 FAKSIAGGF-PLAGVTGRAEVMDAVAPGGLGGTYAGNPIACVAALEVLKVFEQENLLQKA 324
Query: 167 YKMGEIFRSELSSPANKSKA-----------SFKLSSGGLKKSINTLILSVSAILEVYDV 215
+G+ + L + A K + +L G + + + ++
Sbjct: 325 NDLGQKLKDGLLAIAEKHPEIGDVRGLGAMIAIELFEDGDHNKPDAKLTA--------EI 376
Query: 216 CIKMKDAGLVTKP--ISNNIIRLSPALNITEQELREGLDII 254
+ +D GL+ N++R+ L I + ++R+GL+II
Sbjct: 377 VARARDKGLILLSCGPYYNVLRILVPLTIEDAQIRQGLEII 417
>2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal
phosphate, PLP, RV3290C, lysine amino transferase; HET:
PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A*
2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A
Length = 449
Score = 239 bits (611), Expect = 7e-77
Identities = 65/248 (26%), Positives = 100/248 (40%), Gaps = 9/248 (3%)
Query: 10 YNEFGPHMPGYNIIPYNDVDALEAKLKSNP-NICAFMVEPIQGEAGAVVPDDGYLKKVRA 68
Y G P + + A ++ P +I F+ EPIQGE G + +R
Sbjct: 200 YMRPGLDEPAMAALEAEALRQARAAFETRPHDIACFVAEPIQGEGGDRHFRPEFFAAMRE 259
Query: 69 LCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVM 128
LC +++ L I DEVQTG G TG A DV PDIV GK + +
Sbjct: 260 LCDEFDALLIFDEVQTGCGLTGTAWAYQQLDVAPDIVAFGKKTQVCGVMAGRRVDEVADN 319
Query: 129 GTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSSPANKSKASF 188
VP ST+GGN A L+VI E + E A + G+ R+ L A A
Sbjct: 320 VFAVPSRLNSTWGGNLTDMVRARRILEVIEAEGLFERAVQHGKYLRARLDELAADFPAVV 379
Query: 189 KLSSG-GLKKSINTLI-LSVSAILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQE 246
G GL + S+ + ++ ++ ++ P + +R P L ++ E
Sbjct: 380 LDPRGRGL------MCAFSLPTTADRDELIRQLWQRAVIVLPAGADTVRFRPPLTVSTAE 433
Query: 247 LREGLDII 254
+ + +
Sbjct: 434 IDAAIAAV 441
>3oks_A 4-aminobutyrate transaminase; ssgcid, transferase, seattle
structural genomics center for infectious disease; HET:
LLP; 1.80A {Mycobacterium smegmatis} PDB: 3r4t_A* 3q8n_A
Length = 451
Score = 238 bits (610), Expect = 1e-76
Identities = 81/289 (28%), Positives = 128/289 (44%), Gaps = 45/289 (15%)
Query: 1 MLITTDPTSYNE-FGPHMPGYNIIPYND------------------VDALEAKLKSN--- 38
M +T Y + FGP P P + +
Sbjct: 166 MALTAKVMPYKDGFGPFAPEIYRAPLSYPFRDAEFGKELATDGELAAKRAITVIDKQIGA 225
Query: 39 PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYE 98
N+ A ++EPIQGE G +VP DG+L + C + +V+FIADEVQTG RTG + A +E
Sbjct: 226 DNLAAVVIEPIQGEGGFIVPADGFLPTLLDWCRKNDVVFIADEVQTGFARTGAMFACEHE 285
Query: 99 DVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVIL 158
+ PD+++ K ++GGL P+SAV E+M + G TYGGNP+AC A+ ++ I
Sbjct: 286 GIDPDLIVTAKGIAGGL-PLSAVTGRAEIMDSPHVSGLGGTYGGNPIACAAALATIETIE 344
Query: 159 EENMIENAYKMGEIFRSELSSPANKSKA-----------SFKLSSGGLKKSINTLILSVS 207
E ++ A ++ +I + L + + +L G + L
Sbjct: 345 SEGLVARAQQIEKIMKDRLGRLQAEDDRIGDVRGRGAMIAMELVKAGTTEPDADL----- 399
Query: 208 AILEVYDVCIKMKDAGLVTKP--ISNNIIRLSPALNITEQELREGLDII 254
+C AG++ N++R P L+I + L EGLD++
Sbjct: 400 ----TKALCAGAHAAGVIVLSCGTYGNVVRFLPPLSIGDDLLNEGLDVL 444
>2eo5_A 419AA long hypothetical aminotransferase; PLP enzyme, structural
genomics, NPPSFA, N project on protein structural and
functional analyses; HET: PLP; 1.90A {Sulfolobus
tokodaii}
Length = 419
Score = 237 bits (606), Expect = 2e-76
Identities = 80/284 (28%), Positives = 128/284 (45%), Gaps = 49/284 (17%)
Query: 1 MLITTDPTSYNE-FGPHMPGYNIIPYND-------------------------VDALEAK 34
+ +T GP MPG +PY + D +
Sbjct: 147 ISLTASKAVQRSIVGPFMPGVIHVPYPNPYRNPWHINGYENPSELVNRVIEFIEDYIFVN 206
Query: 35 LKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLA 94
L + EPIQGE G V+P + +++ L +Y +L + DEVQ GLGRTGKL A
Sbjct: 207 LVPPEEVAGIFFEPIQGEGGYVIPPKNFFAELQKLAKKYGILLVDDEVQMGLGRTGKLFA 266
Query: 95 IHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTAL 154
I + PD++ L KAL GG+ PI A + ++ PG H +T+GGN LAC + +
Sbjct: 267 IENFNTVPDVITLAKALGGGIMPIGATIFRKDLD--FKPGMHSNTFGGNALACAIGSKVI 324
Query: 155 DVILEENMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAIL---- 210
D++ ++++ + ++G+IF EL GL + + L+
Sbjct: 325 DIV--KDLLPHVNEIGKIFAEELQ---------------GLADDVRGIGLAWGLEYNEKK 367
Query: 211 EVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDII 254
+ + GL+ P + IR+ P L I+E+E ++GLDI+
Sbjct: 368 VRDRIIGESFKRGLLLLPAGRSAIRVIPPLVISEEEAKQGLDIL 411
>4ffc_A 4-aminobutyrate aminotransferase (GABT); structural genomics,
niaid, national institute of allergy AN infectious
diseases; HET: LLP; 1.80A {Mycobacterium abscessus}
Length = 453
Score = 234 bits (598), Expect = 8e-75
Identities = 84/295 (28%), Positives = 133/295 (45%), Gaps = 40/295 (13%)
Query: 1 MLITTDPTSYNE-FGPHMPGYNIIPYND-------------VDALEAKLKSN---PNICA 43
M +T Y FGP P +P + +++++ ++ A
Sbjct: 169 MALTAKSMPYKSQFGPFAPEVYRMPASYPLRDEPGLTGEEAARRAISRIETQIGAQSLAA 228
Query: 44 FMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPD 103
++EPIQGE G +VP G+L + A S+ V+FIADEVQTG RTG A +E + PD
Sbjct: 229 IIIEPIQGEGGFIVPAPGFLATLTAWASENGVVFIADEVQTGFARTGAWFASEHEGIVPD 288
Query: 104 IVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMI 163
IV + K ++GG+ P+SAV E+M + G G TYGGNP+ C A+ AL V+ E ++
Sbjct: 289 IVTMAKGIAGGM-PLSAVTGRAELMDAVYAGGLGGTYGGNPVTCAAAVAALGVMRELDLP 347
Query: 164 ENAYKMGEIFRSELSSPANKSKA-----------SFKLSSGGLKKSINTLILSVSAILEV 212
A + S LS+ A + + ++ G + L
Sbjct: 348 ARARAIEASVTSRLSALAEEVDIIGEVRGRGAMLAIEIVKPGTLEPDAAL---------T 398
Query: 213 YDVCIKMKDAGLVTKP--ISNNIIRLSPALNITEQELREGLDIIINTINTMAAKK 265
+ + G++ N+IRL P L I + L EG+ + + I A+ +
Sbjct: 399 KSIAAEALSQGVLILTCGTFGNVIRLLPPLVIGDDLLDEGITALSDIIRAKASHQ 453
>1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase;
HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP:
c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A*
1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A*
1d7r_A* 1d7v_A* 1z3z_A*
Length = 433
Score = 225 bits (577), Expect = 6e-72
Identities = 63/295 (21%), Positives = 106/295 (35%), Gaps = 56/295 (18%)
Query: 1 MLITTDPTSYNEFGPHMPGYNIIPYND-----------------VDALEAKLKSNP--NI 41
T GP G IP +D + N+
Sbjct: 146 ASATYSAGRKG-VGPAAVGSFAIPAPFTYRPRFERNGAYDYLAELDYAFDLIDRQSSGNL 204
Query: 42 CAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVR 101
AF+ EPI G + DGY+ ++ C +L I DE QTG+GRTG + A + V
Sbjct: 205 AAFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRTGTMFACQRDGVT 264
Query: 102 PDIVILGKALSGGLYPISAVLADDEVMGTLVPG--THGSTYGGNPLACKLAMTALDVILE 159
PDI+ L K L G P++A++ + +T+ +PL + + LDV+
Sbjct: 265 PDILTLSKTLGAG-LPLAAIVTSAAIEERAHELGYLFYTTHVSDPLPAAVGLRVLDVVQR 323
Query: 160 ENMIENAYKMGEIFRSELSSPANKSKASFKL----------------SSGGLKKSINTLI 203
+ ++ A MG+ R L F K+ + L
Sbjct: 324 DGLVARANVMGDRLRRGL----LDLMERFDCIGDVRGRGLLLGVEIVKDRRTKEPADGLG 379
Query: 204 LSVSAILEVYDVCIKMKDAGLVTKPIS----NNIIRLSPALNITEQELREGLDII 254
++ + + GL + + R++P L ++E E+ GL ++
Sbjct: 380 AKITR---------ECMNLGLSMNIVQLPGMGGVFRIAPPLTVSEDEIDLGLSLL 425
>3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1,
pyridoxal-5'-phosphate dependent racemase, pyrid
phosphate, isomerase; HET: PLP; 2.21A {Achromobacter
obae} PDB: 2zuk_A* 3dxw_A*
Length = 439
Score = 221 bits (566), Expect = 3e-70
Identities = 75/301 (24%), Positives = 128/301 (42%), Gaps = 59/301 (19%)
Query: 1 MLITTDPTSYNEFGPHMPGYNIIPYND--------------VDALEAKLKSNP--NICAF 44
M + G ++PY D + L KL + P +I A
Sbjct: 148 MAFSGHSVQA--DAAKADGLILLPYPDPYRPYRNDPTGDAILTLLTEKLAAVPAGSIGAA 205
Query: 45 MVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDI 104
+EPIQ + G +VP DG+L+K +C + +L + DEV+ GL R+G+L +E PDI
Sbjct: 206 FIEPIQSDGGLIVPPDGFLRKFADICRAHGILVVCDEVKVGLARSGRLHCFEHEGFVPDI 265
Query: 105 VILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIE 164
++LGK L GGL P+SAV+A E++ T GNP++ + L+ I +++
Sbjct: 266 LVLGKGLGGGL-PLSAVIAPAEIL-DCASAFAMQTLHGNPISAAAGLAVLETIDRDDLPA 323
Query: 165 NAYKMGEIFRSELSSPANK--------------------SKASFKLSSGGLKKSINTLIL 204
A + G + R LS A + + S + + K
Sbjct: 324 MAERKGRLLRDGLSELAKRHPLIGDIRGRGLACGMELVCDRQSREPARAETAK------- 376
Query: 205 SVSAILEVYDVCIKMKDAGLVTKP--ISNNIIRLSPALNITEQELREGLDIIINTINTMA 262
+ + GLV ++ N++ +P L ITE ++ + LD++ + ++
Sbjct: 377 ----------LIYRAYQLGLVVYYVGMNGNVLEFTPPLTITETDIHKALDLLDRAFSELS 426
Query: 263 A 263
A
Sbjct: 427 A 427
>1ohv_A 4-aminobutyrate aminotransferase; PLP-dependent enzyme, 4- AMIN
acid, antiepileptic drug target; HET: PLP; 2.3A {Sus
scrofa} SCOP: c.67.1.4 PDB: 1ohw_A* 1ohy_A*
Length = 472
Score = 210 bits (536), Expect = 2e-65
Identities = 48/266 (18%), Positives = 90/266 (33%), Gaps = 40/266 (15%)
Query: 7 PTSYNEFGPHMPGYNIIPYNDVDALEAKL----KSNPNICAFMVEPIQGEAGAVVPDDGY 62
P + ++ +E + K + +VEPIQ E G D +
Sbjct: 221 PRLKYPLEEFVKENQQEEARCLEEVEDLIVKYRKKKKTVAGIIVEPIQSEGGDNHASDDF 280
Query: 63 LKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVR--PDIVILGKALSGGLYPISA 120
+K+R + ++ F+ DEVQTG G TGK A + + D++ K + G
Sbjct: 281 FRKLRDISRKHGCAFLVDEVQTGGGSTGKFWAHEHWGLDDPADVMTFSKKMMTGG-FFHK 339
Query: 121 VLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSSP 180
P +T+ G+P L +++I E+++ NA G++ + L
Sbjct: 340 EEFRPN-----APYRIFNTWLGDPSKNLLLAEVINIIKREDLLSNAAHAGKVLLTGLLDL 394
Query: 181 ANKSKA------------SFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKP 228
+ SF ++ + ++ G++
Sbjct: 395 QARYPQFISRVRGRGTFCSFDTPDESIRN----------------KLISIARNKGVMLGG 438
Query: 229 ISNNIIRLSPALNITEQELREGLDII 254
+ IR P L + L+I
Sbjct: 439 CGDKSIRFRPTLVFRDHHAHLFLNIF 464
>3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr;
aminotransferase, csgid; 2.05A {Bacillus anthracis}
Length = 452
Score = 195 bits (499), Expect = 3e-60
Identities = 67/271 (24%), Positives = 108/271 (39%), Gaps = 56/271 (20%)
Query: 28 VDALEAK-LKSNP-NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTG 85
V ++ I AF++EPI G ++ Y+K V C ++ L I+DEV G
Sbjct: 201 VKEVDRVMTWELSETIAAFIMEPIITGGGILMAPQDYMKAVHETCQKHGALLISDEVICG 260
Query: 86 LGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGT------HGST 139
GRTGK DV+PDI+ + K ++ P+SA E+ H +T
Sbjct: 261 FGRTGKAFGFMNYDVKPDIITMAKGITSAYLPLSATAVKREIYEAFKGKGEYEFFRHINT 320
Query: 140 YGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSSP------------------- 180
+GGNP AC LA+ L++I EN+IE + +MG + +L
Sbjct: 321 FGGNPAACALALKNLEIIENENLIERSAQMGSLLLEQLKEEIGEHPLVGDIRGKGLLVGI 380
Query: 181 ---ANK-SKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPI------S 230
+K +K V + C K+ GL+
Sbjct: 381 ELVNDKETKEPIDNDKIA----------------SVVNAC---KEKGLIIGRNGMTTAGY 421
Query: 231 NNIIRLSPALNITEQELREGLDIIINTINTM 261
NNI+ L+P L I+ +E+ + + + +
Sbjct: 422 NNILTLAPPLVISSEEIAFVIGTLKTAMERI 452
>3dod_A Adenosylmethionine-8-amino-7-oxononanoate aminotr;
aminotransferase, biotin biosynthesis, pyridoxal
phosphate, adenosyl-L-methionine; HET: PLP; 1.90A
{Bacillus subtilis} PDB: 3drd_A 3du4_A*
Length = 448
Score = 194 bits (495), Expect = 1e-59
Identities = 79/298 (26%), Positives = 128/298 (42%), Gaps = 48/298 (16%)
Query: 5 TDPTSYNE-FGPHMPGYNIIPY----------------NDVDALEAKLKSNP-NICAFMV 46
++ +GP M P + L L+ + I A +
Sbjct: 157 GSIELFHHVYGPLMFESYKAPIPYVYRSESGDPDECRDQCLRELAQLLEEHHEEIAALSI 216
Query: 47 EP-IQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIV 105
E +QG +G +V +GYL VR LC+ Y+VL I DEV TG GRTGK+ A +E+V+PD++
Sbjct: 217 ESMVQGASGMIVMPEGYLAGVRELCTTYDVLMIVDEVATGFGRTGKMFACEHENVQPDLM 276
Query: 106 ILGKALSGGLYPISAVLADDEVMGTLVPGT-------HGSTYGGNPLACKLAMTALDVIL 158
GK ++GG PI+ A +++ HG +Y GN L C +A+ L +
Sbjct: 277 AAGKGITGGYLPIAVTFATEDIYKAFYDDYENLKTFFHGHSYTGNQLGCAVALENLALFE 336
Query: 159 EENMIENAYKMGEIFRSELSSPANKSKASFKLSSG-------G------LKKSINTLILS 205
EN++E + + L G L +S T
Sbjct: 337 SENIVEQVAEKSKKLHFLL--------QDLHALPHVGDIRQLGFMCGAELVRSKETKEPY 388
Query: 206 VSAILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINTMAA 263
+ Y V +KM++ G++T+P+ + I P L T +EL E + I+ I+ + +
Sbjct: 389 PADRRIGYKVSLKMRELGMLTRPLGDVIA-FLPPLASTAEELSEMVAIMKQAIHEVTS 445
>3nui_A Pyruvate transaminase; amino transferase, transferase; 2.00A
{Vibrio fluvialis}
Length = 478
Score = 193 bits (494), Expect = 4e-59
Identities = 64/268 (23%), Positives = 109/268 (40%), Gaps = 49/268 (18%)
Query: 28 VDALEAK-LKSNP-NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTG 85
LE + I F EP+ G G + P GY + + + +Y++ I+DEV G
Sbjct: 216 ARELEETIQREGADTIAGFFAEPVMGAGGVIPPAKGYFQAILPILRKYDIPVISDEVICG 275
Query: 86 LGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGT-------HGS 138
GRTG D PD +I K L+ G +P+ AV+ E+ L HG
Sbjct: 276 FGRTGNTWGCVTYDFTPDAIISSKNLTAGFFPMGAVILGPELSKRLETAIEAIEEFPHGF 335
Query: 139 TYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSS----P-------------- 180
T G+P+ C +A+ A+DV++ E + EN ++ F L P
Sbjct: 336 TASGHPVGCAIALKAIDVVMNEGLAENVRRLAPRFEERLKHIAERPNIGEYRGIGFMWAL 395
Query: 181 ---ANK-SKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPISNNIIRL 236
+K SK F + ++ + D GL+ +P+ +++ L
Sbjct: 396 EAVKDKASKTPFDGNLSVSER-----------------IANTCTDLGLICRPLGQSVV-L 437
Query: 237 SPALNITEQELREGLDIIINTINTMAAK 264
P +TE ++ E D + ++ + A+
Sbjct: 438 CPPFILTEAQMDEMFDKLEKALDKVFAE 465
>3i4j_A Aminotransferase, class III; structural GENOMICS,NYSGXRC, target
11246C, pyridoxal phosphate, PSI-2, protein structure
initiative; 1.70A {Deinococcus radiodurans}
Length = 430
Score = 190 bits (484), Expect = 4e-58
Identities = 66/280 (23%), Positives = 117/280 (41%), Gaps = 29/280 (10%)
Query: 13 FGPHMPGYNIIPYND----------VDALEAK-LKSNP-NICAFMVEPIQG-EAGAVVPD 59
+ P M + L A + P + AFM EP+ G A+ P
Sbjct: 151 YTPLMRPEAWPKLPKPDPARNGAEDAEGLRALLEREGPETVAAFMAEPVVGASDAALAPA 210
Query: 60 DGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAI-HYEDVRPDIVILGKALSGGLYPI 118
GY ++VR +C + ++FIADEV +G+GR G LA+ + V PDI +LGK L+ G P+
Sbjct: 211 PGYYERVRDICDEAGIIFIADEVMSGMGRCGSPLALSRWSGVTPDIAVLGKGLAAGYAPL 270
Query: 119 SAVLADDEVMGTLVPGT----HGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFR 174
+ +LA +V T++ G+ HG TY G+P++ ++ LD++ E++ A + G
Sbjct: 271 AGLLAAPQVYETVMGGSGAFMHGFTYAGHPVSVAAGLSVLDIVEREDLTGAAKERGAQLL 330
Query: 175 SELSSPANKSK-----------ASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAG 223
+ L + + L ++ T ++ +
Sbjct: 331 AGLQALQARFPQMMQVRGTGLLLGVVLGDLATGQAFETPGIASRIGAAALKRGLITYPGS 390
Query: 224 LVTKPISNNIIRLSPALNITEQELREGLDIIINTINTMAA 263
+ + L P L+IT E+ L ++ + +
Sbjct: 391 GAEPNGRGDHLLLGPPLSITAAEVDGLLALLAGALEDVLG 430
>3gju_A Putative aminotransferase; pyridoxal phosphate, PLP-dependent
transferase-like fold, ST genomics, joint center for
structural genomics, JCSG; HET: MSE LLP PLP; 1.55A
{Mesorhizobium loti} PDB: 3fcr_A*
Length = 460
Score = 188 bits (480), Expect = 3e-57
Identities = 70/260 (26%), Positives = 118/260 (45%), Gaps = 30/260 (11%)
Query: 28 VDALEAK-LKSNP-NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTG 85
D LE L P I AF+ EPI G G V P GY +K++A+ +Y+VL +ADEV TG
Sbjct: 207 ADKLEEMILAEGPETIAAFIGEPILGTGGIVPPPAGYWEKIQAVLKKYDVLLVADEVVTG 266
Query: 86 LGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGT-------HGS 138
GR G + + ++PD++ + K L+ P+S V+ D V LV G+ HG
Sbjct: 267 FGRLGTMFGSDHYGIKPDLITIAKGLTSAYAPLSGVIVADRVWQVLVQGSDKLGSLGHGW 326
Query: 139 TYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSSPANKSKASFKL----SSGG 194
TY +P+ + L++I E +++ NA + G FR+EL K+ K G
Sbjct: 327 TYSAHPICVAAGVANLELIDEMDLVTNAGETGAYFRAEL----AKAVGGHKNVGEVRGDG 382
Query: 195 L---------KKSINTLILSVSAILEVYDVCIKMKDAGLVTKPI-SNNIIRLSPALNITE 244
+ K S +V +G++ + + +I+ +P L +T
Sbjct: 383 MLAAVEFVADKDDRVFFDASQKIGPQVATAL---AASGVIGRAMPQGDILGFAPPLCLTR 439
Query: 245 QELREGLDIIINTINTMAAK 264
++ + + + ++ A
Sbjct: 440 EQADIVVSKTADAVKSVFAN 459
>3a8u_X Omega-amino acid--pyruvate aminotransferase; large pleated sheet,
transaminase, pyridox phosphate; HET: PLP; 1.40A
{Pseudomonas putida}
Length = 449
Score = 185 bits (472), Expect = 3e-56
Identities = 64/267 (23%), Positives = 108/267 (40%), Gaps = 57/267 (21%)
Query: 28 VDALEAK-LKSNP-NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTG 85
D L + NI A VEP+ G AG +VP +GYLK+ R +C+Q+N+L + DEV TG
Sbjct: 205 ADELLKLIELHDASNIAAVFVEPLAGSAGVLVPPEGYLKRNREICNQHNILLVFDEVITG 264
Query: 86 LGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGT---------H 136
GRTG + V PD++ + K ++ G P+ AV+A E+ T + H
Sbjct: 265 FGRTGSMFGADSFGVTPDLMCIAKQVTNGAIPMGAVIASTEIYQTFMNQPTPEYAVEFPH 324
Query: 137 GSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSS----------------- 179
G TY +P+AC + AL ++ +EN++++ ++ F L
Sbjct: 325 GYTYSAHPVACAAGLAALCLLQKENLVQSVAEVAPHFEKALHGIKGAKNVIDIRNFGLAG 384
Query: 180 -----PANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPISNNII 234
P + ++ + + AG + + +
Sbjct: 385 AIQIAPRDGDAIVRP-----------------------FEAGMALWKAGFYVRFGGDTLQ 421
Query: 235 RLSPALNITEQELREGLDIIINTINTM 261
P N Q+L D + +N +
Sbjct: 422 -FGPTFNSKPQDLDRLFDAVGEVLNKL 447
>4a6r_A Omega transaminase; transferase, PLP-binding enzyme, transaminase
fold type I; HET: TA8; 1.35A {Chromobacterium violaceum}
PDB: 4a6t_A* 4a6u_A 4a72_A* 4ah3_A*
Length = 459
Score = 183 bits (468), Expect = 2e-55
Identities = 62/254 (24%), Positives = 107/254 (42%), Gaps = 23/254 (9%)
Query: 28 VDALEAK-LKSNP-NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTG 85
LE K L+ + AF+ EPIQG G +VP Y ++ +C +Y+VL +ADEV G
Sbjct: 205 ARWLEEKILEIGADKVAAFVGEPIQGAGGVIVPPATYWPEIERICRKYDVLLVADEVICG 264
Query: 86 LGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGT---HGSTYGG 142
GRTG+ + +PD+ K LS G PI AV V L+ G HG TY G
Sbjct: 265 FGRTGEWFGHQHFGFQPDLFTAAKGLSSGYLPIGAVFVGKRVAEGLIAGGDFNHGFTYSG 324
Query: 143 NPLACKLAMTALDVILEENMIENA-YKMGEIFRSELSSPANKSK-----------ASFKL 190
+P+ +A + + +E +++ +G + ++ + +F L
Sbjct: 325 HPVCAAVAHANVAALRDEGIVQRVKDDIGPYMQKRWRETFSRFEHVDDVRGVGMVQAFTL 384
Query: 191 SSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREG 250
K+ + + + D+ L+ + ++I+ +P L +T E+ E
Sbjct: 385 VKNKAKRELFPDFGEIGTL--CRDIFF---RNNLIMRACGDHIV-SAPPLVMTRAEVDEM 438
Query: 251 LDIIINTINTMAAK 264
L + +
Sbjct: 439 LAVAERCLEEFEQT 452
>3hmu_A Aminotransferase, class III; structural genomics, pyridoxal
phosphate, PSI-2, protein structure initiative; 2.10A
{Silicibacter pomeroyi}
Length = 472
Score = 183 bits (466), Expect = 4e-55
Identities = 67/264 (25%), Positives = 112/264 (42%), Gaps = 44/264 (16%)
Query: 28 VDALEAK-LKSNP-NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTG 85
LE L+ + AF+ EP+QG G +V D Y +++ +C +Y++L IADEV G
Sbjct: 209 ARELEEAILELGENRVAAFIAEPVQGAGGVIVAPDSYWPEIQRICDKYDILLIADEVICG 268
Query: 86 LGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGT--HGSTYGGN 143
GRTG +RP I+ + K LS G PI + DEV + HG TY G+
Sbjct: 269 FGRTGNWFGTQTMGIRPHIMTIAKGLSSGYAPIGGSIVCDEVAHVIGKDEFNHGYTYSGH 328
Query: 144 PLACKLAMTALDVILEENMIENAYKMGE-IFRSELSS----------------------P 180
P+A +A+ L ++ EEN++++ + + + + P
Sbjct: 329 PVAAAVALENLRILEEENILDHVRNVAAPYLKEKWEALTDHPLVGEAKIVGMMASIALTP 388
Query: 181 ANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPISNNIIRLSPAL 240
S+A F G + Y + L+ + + + +I +SP L
Sbjct: 389 NKASRAKFASEPGTI----------------GYICRERCFANNLIMRHVGDRMI-ISPPL 431
Query: 241 NITEQELREGLDIIINTINTMAAK 264
IT E+ E I +++ A+
Sbjct: 432 VITPAEIDEMFVRIRKSLDEAQAE 455
>3tfu_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; transferase,
transferase-transferase inhibitor complex; HET: PL8;
1.94A {Mycobacterium tuberculosis} PDB: 3tft_A* 3bv0_A*
3lv2_A*
Length = 457
Score = 182 bits (463), Expect = 9e-55
Identities = 65/271 (23%), Positives = 117/271 (43%), Gaps = 33/271 (12%)
Query: 13 FGPHMPGYNIIPY-------NDVDALEAKLKSNPN-ICAFMVEPI-QGEAGAVVPDDGYL 63
+ + P A EA+L + + A +VEP+ QG G D YL
Sbjct: 198 WTDVLAAQVFAPQVPRDYDPAYSAAFEAQLAQHAGELAAVVVEPVVQGAGGMRFHDPRYL 257
Query: 64 KKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLA 123
+R +C +Y VL I DE+ TG GRTG L A + V PDI+ +GKAL+GG ++A L
Sbjct: 258 HDLRDICRRYEVLLIFDEIATGFGRTGALFAADHAGVSPDIMCVGKALTGGYLSLAATLC 317
Query: 124 DDEVMGTLVPGT-----HGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELS 178
+V T+ G HG T+ NPLAC +++ +++++L ++ ++ + L
Sbjct: 318 TADVAHTISAGAAGALMHGPTFMANPLACAVSVASVELLLGQDWRTRITELAAGLTAGL- 376
Query: 179 SPANKSKASFKLSSGGLKKSINTLIL-SVSAI-----LEVYDVCIKMKDAGLVTKPISNN 232
+ + L + + ++ I +++ D G+ +P N
Sbjct: 377 -------DTAR----ALPAVTDVRVCGAIGVIECDRPVDLAVATPAALDRGVWLRPF-RN 424
Query: 233 IIRLSPALNITEQELREGLDIIINTINTMAA 263
++ P T E+ + ++ + +
Sbjct: 425 LVYAMPPYICTPAEITQITSAMVEVARLVGS 455
>3i5t_A Aminotransferase; pyridoxal 5'-phosphate, PSI-2, NYSGXRC, ST
genomics, protein structure initiative; HET: PLP; 2.00A
{Rhodobacter sphaeroides 2}
Length = 476
Score = 181 bits (462), Expect = 2e-54
Identities = 63/296 (21%), Positives = 122/296 (41%), Gaps = 58/296 (19%)
Query: 13 FGPHMPGYNIIP----YND------------VDALEAK-LKSNP-NICAFMVEPIQGEAG 54
F + + + V E + P I AF+ EPI G
Sbjct: 176 FDIAQDRISFLSSPNPRHAGNRSQEAFLDDLVQEFEDRIESLGPDTIAAFLAEPILASGG 235
Query: 55 AVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAI-HYEDVRPDIVILGKALSG 113
++P GY + +A+C ++++L+I+DEV TG GR G+ A V PDI+ K ++
Sbjct: 236 VIIPPAGYHARFKAICEKHDILYISDEVVTGFGRCGEWFASEKVFGVVPDIITFAKGVTS 295
Query: 114 GLYPISAVLADDEVMGTLVPGT-------HGSTYGGNPLACKLAMTALDVILEENMIENA 166
G P+ + + V+ + +G TY P+AC A+ ++++ E +++ A
Sbjct: 296 GYVPLGGLAISEAVLARISGENAKGSWFTNGYTYSNQPVACAAALANIELMEREGIVDQA 355
Query: 167 YKMGEIFRSELSSPANKSKASFKLSS-------------GGL-----KKSINTLILSVSA 208
+M + F + L+S L G + + +
Sbjct: 356 REMADYFAAALAS----------LRDLPGVAETRSVGLVGCVQCLLDPTRADGTAEDKAF 405
Query: 209 ILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINTMAAK 264
L++ + C + GL+ +P+ + + +SP L I+ ++ E + I+ I ++A
Sbjct: 406 TLKIDERC---FELGLIVRPLGDLCV-ISPPLIISRAQIDEMVAIMRQAITEVSAA 457
>1s0a_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; fold
type I, subclass II, homodimer; HET: LLP; 1.71A
{Escherichia coli} SCOP: c.67.1.4 PDB: 1qj5_A* 1mlz_A*
1qj3_A* 1mly_A* 1s06_A* 1s08_A* 1s09_A* 1s07_A* 1mgv_A*
1dty_A*
Length = 429
Score = 180 bits (459), Expect = 2e-54
Identities = 72/284 (25%), Positives = 121/284 (42%), Gaps = 45/284 (15%)
Query: 5 TDP-TSYNE-FGPHMPGYNIIPY-----------NDVDALEAKLKSNPN-ICAFMVEPI- 49
DP S + + ++P P D+ + ++ + I A ++EPI
Sbjct: 155 CDPDNSMHSLWKGYLPENLFAPAPQSRMDGEWDERDMVGFARLMAAHRHEIAAVIIEPIV 214
Query: 50 QGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGK 109
QG G + +LK++R +C + +L IADE+ TG GRTGKL A + ++ PDI+ LGK
Sbjct: 215 QGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTGKLFACEHAEIAPDILCLGK 274
Query: 110 ALSGGLYPISAVLADDEV--------MGTLVPGTHGSTYGGNPLACKLAMTALDVILEEN 161
AL+GG +SA L EV G + HG T+ GNPLAC A +L ++ +
Sbjct: 275 ALTGGTMTLSATLTTREVAETISNGEAGCFM---HGPTFMGNPLACAAANASLAILESGD 331
Query: 162 MIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINTLILSVSAILEVYD------V 215
+ + R +L A + + + +L ++E +
Sbjct: 332 WQQQVADIEVQLREQL--------APAR----DAEMVADVRVLGAIGVVETTHPVNMAAL 379
Query: 216 CIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTIN 259
+ G+ +P +I L P I Q+L+ + +
Sbjct: 380 QKFFVEQGVWIRPF-GKLIYLMPPYIILPQQLQRLTAAVNRAVQ 422
>4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase;
BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A
{Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A*
Length = 831
Score = 183 bits (465), Expect = 5e-53
Identities = 49/243 (20%), Positives = 88/243 (36%), Gaps = 21/243 (8%)
Query: 33 AKLKSNPNICAFMVEPI-QGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGK 91
+ ++ + ++ A ++EP+ G G + D + + + C + I DEV TG R G
Sbjct: 587 SGVRQSAHVGALIIEPVIHGAGGMHMVDPLFQRVLVNECRNRKIPVIFDEVFTGFWRLGV 646
Query: 92 LLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEV----MGTLVPGT--HGSTYGGNPL 145
+PDI K L+GG+ P++ LA D V G HG +Y + +
Sbjct: 647 ETTTELLGCKPDIACFAKLLTGGMVPLAVTLATDAVFDSFSGDSKLKALLHGHSYSAHAM 706
Query: 146 ACKLAMTALDVILEENMIENAYKMGEIFRSELSSPANKSKASFKL-----SSGG-----L 195
C A A+ + N G+ R + +S G L
Sbjct: 707 GCATAAKAIQWFKDPETNHNITSQGKTLRELWDEELVQQISSHSAVQRVVVIGTLFALEL 766
Query: 196 KKSINTLILSVSAILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIII 255
K + + + + + G+ T+P+ N I L + + R L +
Sbjct: 767 KADASNSGYASLYAKSLLIMLR---EDGIFTRPLGNVIY-LMCGPCTSPEICRRLLTKLY 822
Query: 256 NTI 258
+
Sbjct: 823 KRL 825
>2cy8_A D-phgat, D-phenylglycine aminotransferase; structural genomics,
NPPSFA, national PROJ protein structural and functional
analyses; 2.30A {Pseudomonas stutzeri}
Length = 453
Score = 121 bits (306), Expect = 4e-32
Identities = 49/181 (27%), Positives = 84/181 (46%), Gaps = 12/181 (6%)
Query: 22 IIPYNDVDALEAKLKSNPN-ICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIAD 80
+I +D++ + ++ + I AF+ EP+ G D +L++ L QY LFI D
Sbjct: 182 LIRPDDIEGMREVFANHGSDIAAFIAEPVGSHFGVTPVSDSFLREGAELARQYGALFILD 241
Query: 81 EVQTG--LGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGS 138
EV +G +G G DV+PD+ L KA +GGL P + ++VMG L G+
Sbjct: 242 EVISGFRVGNHG---MQALLDVQPDLTCLAKASAGGL-PGGILGGREDVMGVLSRGSDRK 297
Query: 139 TY-----GGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSSPANKSKASFKLSSG 193
GNP+ A+ A+D ILE+++ +G+ R ++ + ++
Sbjct: 298 VLHQGTFTGNPITAAAAIAAIDTILEDDVCAKINDLGQFAREAMNHLFARKGLNWLAYGR 357
Query: 194 G 194
Sbjct: 358 F 358
>2yky_A Beta-transaminase; transferase; HET: PLP SFE; 1.69A {Mesorhizobium
SP} PDB: 2ykv_A* 2yku_A* 2ykx_A*
Length = 465
Score = 120 bits (303), Expect = 1e-31
Identities = 49/180 (27%), Positives = 75/180 (41%), Gaps = 11/180 (6%)
Query: 22 IIPYNDVDALEAKLKSNPN-ICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIAD 80
+ YNDV+ LK + + A +VEP+ G G V + +L +RA S+ L I D
Sbjct: 214 LGVYNDVEGTADLLKRHGHDCAAILVEPMLGAGGCVPAERAFLDLLRAEASRCGALLIFD 273
Query: 81 EVQTG-LGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGST 139
EV T L G A + D+ LGK + GG+ A ++M P G+
Sbjct: 274 EVMTSRLSGGG---AQEMLGISADLTTLGKYIGGGM-SFGAFGGRRDLMERFDPARDGAF 329
Query: 140 Y--G---GNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSSPANKSKASFKLSSGG 194
G N L AL I + G+ FR+ L+ A +++A + + G
Sbjct: 330 AHAGTFNNNILTMSAGHAALTQIYTRQAASDLSASGDRFRANLNRIAVENQAPLQFTGLG 389
>2epj_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA,
structural genomics, NPPSFA; HET: PMP; 1.70A {Aeropyrum
pernix} PDB: 2zsl_A* 2zsm_A*
Length = 434
Score = 112 bits (283), Expect = 7e-29
Identities = 51/181 (28%), Positives = 82/181 (45%), Gaps = 14/181 (7%)
Query: 22 IIPYNDVDALEAKLKSNPN-ICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIAD 80
+ PYNDV+ALE + I +VEP+ AG + P +L ++ L + L I D
Sbjct: 184 VTPYNDVEALERVFAEYGDRIAGVIVEPVIANAGVIPPRREFLAALQRLSRESGALLILD 243
Query: 81 EVQTG--LGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGS 138
EV TG LG G A Y ++ DI++LGK + GG P+ AV EVM L P G
Sbjct: 244 EVVTGFRLGLEG---AQGYFNIEGDIIVLGKIIGGGF-PVGAVAGSREVMSLLTPQ--GK 297
Query: 139 TY--G---GNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSSPANKSKASFKLSSG 193
+ G +P+ + L + EE + + + + S +++ + ++
Sbjct: 298 VFNAGTFNAHPITMAAGLATLKALEEEPVYSVSREAAKALEEAASEVLDRTGLPYTINRV 357
Query: 194 G 194
Sbjct: 358 E 358
>3l44_A Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha beta class,
PLP-dependent transferase-like, bacillus A csgid,
porphyrin biosynthesis; HET: LLP; 2.05A {Bacillus
anthracis}
Length = 434
Score = 111 bits (281), Expect = 1e-28
Identities = 56/181 (30%), Positives = 81/181 (44%), Gaps = 14/181 (7%)
Query: 22 IIPYNDVDALEAKLKSNPN-ICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIAD 80
+P+N+V+ L+ L + + A +VEPI G G V P G+L+KV L + L I D
Sbjct: 183 TVPFNNVETLKEALDKWGHEVAAILVEPIVGNFGIVEPKPGFLEKVNELVHEAGALVIYD 242
Query: 81 EVQTG--LGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGS 138
EV T G A V PD+ LGK + GGL PI A E+M + P G
Sbjct: 243 EVITAFRFMYGG---AQDLLGVTPDLTALGKVIGGGL-PIGAYGGKKEIMEQVAPL--GP 296
Query: 139 TY--G---GNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSSPANKSKASFKLSSG 193
Y G GNP + + L+V+ +E + E ++G + A K L+
Sbjct: 297 AYQAGTMAGNPASMASGIACLEVLQQEGLYEKLDELGATLEKGILEQAAKHNIDITLNRL 356
Query: 194 G 194
Sbjct: 357 K 357
>3fq8_A Glutamate-1-semialdehyde 2,1-aminomutase; drug resistance,
microev0lution, integrated approach, chlorophyll
biosynthesis; HET: PMP; 2.00A {Synechococcus elongatus
pcc 6301} PDB: 2hp1_A* 2hoz_A* 2hoy_A* 2hp2_A* 3fq7_A*
2gsa_A* 3gsb_A* 4gsa_A* 3fqa_A* 2cfb_A*
Length = 427
Score = 110 bits (278), Expect = 3e-28
Identities = 53/181 (29%), Positives = 87/181 (48%), Gaps = 14/181 (7%)
Query: 22 IIPYNDVDALEAKLKSNPN-ICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIAD 80
PYND++A++A NP I ++EPI G +G +VPD G+L+ +R + +++ L + D
Sbjct: 180 TTPYNDLEAVKALFAENPGEIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVFD 239
Query: 81 EVQTG--LGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGS 138
EV TG + G V PD+ LGK + GGL P+ A E+M + P G
Sbjct: 240 EVITGFRIAYGG---VQEKFGVTPDLTTLGKIIGGGL-PVGAYGGKREIMQLVAPA--GP 293
Query: 139 TY--G---GNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSSPANKSKASFKLSSG 193
Y G GNPLA + L+++ + E ++ + L + A ++ +
Sbjct: 294 MYQAGTLSGNPLAMTAGIKTLELLRQPGTYEYLDQITKRLSDGLLAIAQETGHAACGGQV 353
Query: 194 G 194
Sbjct: 354 S 354
>4e77_A Glutamate-1-semialdehyde 2,1-aminomutase; structural genomics,
center for structural genomics of infec diseases, csgid,
porphyrin biosynthesis; 2.00A {Yersinia pestis}
Length = 429
Score = 109 bits (276), Expect = 5e-28
Identities = 52/181 (28%), Positives = 79/181 (43%), Gaps = 14/181 (7%)
Query: 22 IIPYNDVDALEAKLKSNPN-ICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIAD 80
YND+ ++ + P + +VEP+ G + P +L +RALC ++ L I D
Sbjct: 181 TCTYNDLASVRQAFEQYPQEVACIIVEPVAGNMNCIPPLPEFLPGLRALCDEFGALLIID 240
Query: 81 EVQTG--LGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGS 138
EV TG + G A Y V PD+ LGK + GG+ P+ A EVM L P G
Sbjct: 241 EVMTGFRVALAG---AQDYYHVIPDLTCLGKIIGGGM-PVGAFGGRREVMNALAPT--GP 294
Query: 139 TY--G---GNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSSPANKSKASFKLSSG 193
Y G GNP+A L I + + E ++ + + L A + ++
Sbjct: 295 VYQAGTLSGNPIAMAAGFACLTEISQVGVYETLTELTDSLATGLRHAAKEENIPLVVNHV 354
Query: 194 G 194
G
Sbjct: 355 G 355
>3k28_A Glutamate-1-semialdehyde 2,1-aminomutase 2; biosynthesis of
cofactors, prosthetic groups, and carriers, csgid,
cytoplasm, isomerase; HET: MSE PLP; 1.95A {Bacillus
anthracis str} PDB: 3bs8_A*
Length = 429
Score = 106 bits (268), Expect = 8e-27
Identities = 52/181 (28%), Positives = 77/181 (42%), Gaps = 15/181 (8%)
Query: 22 IIPYNDVDALEAKLKSNPN-ICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIAD 80
+ YND+++++ + + I +VEP+ G G V P G+L+ +R + Q L I D
Sbjct: 181 TVAYNDLESVKYAFEQFGDDIACVIVEPVAGNMGVVPPQPGFLEGLREVTEQNGALLIFD 240
Query: 81 EVQTG--LGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGS 138
EV TG + Y V PD+ LGK + GGL P+ A E+M + P G
Sbjct: 241 EVMTGFRVAYNC---GQGYYGVTPDLTCLGKVIGGGL-PVGAYGGKAEIMRQVAPS--GP 294
Query: 139 TY--G---GNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSSPANKSKASFKLSSG 193
Y G GNPLA L L + E+ + L A K ++
Sbjct: 295 IYQAGTLSGNPLAMAAGYETLV-QLTPESYVEFERKAEMLEAGLRKAAEKHGIPHHINRA 353
Query: 194 G 194
G
Sbjct: 354 G 354
>2e7u_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA,
structural genomics, NPPSFA; HET: PMP; 1.90A {Thermus
thermophilus}
Length = 424
Score = 100 bits (251), Expect = 2e-24
Identities = 55/147 (37%), Positives = 74/147 (50%), Gaps = 15/147 (10%)
Query: 22 IIPYNDVDALEAKLKSNPN-ICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIAD 80
++ YND + L LK I A + EP+ G AG +VP + +LK + Y VL IAD
Sbjct: 180 VLEYNDPEGLREVLKRRGEEIAAIIFEPVVGNAGVLVPTEDFLKALHE-AKAYGVLLIAD 238
Query: 81 EVQTG--LGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGS 138
EV TG L G A ++PD+V LGK L GGL P +A E+M + P G
Sbjct: 239 EVMTGFRLAFGG---ATELLGLKPDLVTLGKILGGGL-PAAAYAGRREIMEKVAPL--GP 292
Query: 139 TY--G---GNPLACKLAMTALDVILEE 160
Y G GNPLA + L+++ E
Sbjct: 293 VYQAGTLSGNPLAMAAGLATLELLEEN 319
>1bs0_A Protein (8-amino-7-oxonanoate synthase); PLP-dependent acyl-COA
synthase, biotin biosynthesis, 8-AMIN oxonanoate
synthase; 1.65A {Escherichia coli} SCOP: c.67.1.4 PDB:
2g6w_A* 1dje_A* 1dj9_A*
Length = 384
Score = 47.9 bits (115), Expect = 1e-06
Identities = 29/121 (23%), Positives = 46/121 (38%), Gaps = 31/121 (25%)
Query: 26 NDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPD-----DGY---LKKVRALCSQYNVLF 77
NDV L L S VV + DG L +++ + Q+N
Sbjct: 153 NDVTHLARLLASP-----------CPGQQMVVTEGVFSMDGDSAPLAEIQQVTQQHNGWL 201
Query: 78 IADEVQ-TG-LGRTGKLLAIHYEDVRPDIVI--LGKAL--SGGLYPISAVLADDEVMGTL 131
+ D+ TG +G G+ + V+P++++ GK SG AVL V L
Sbjct: 202 MVDDAHGTGVIGEQGRGSC-WLQKVKPELLVVTFGKGFGVSGA-----AVLCSSTVADYL 255
Query: 132 V 132
+
Sbjct: 256 L 256
>1m32_A 2-aminoethylphosphonate-pyruvate aminotransferase; PLP-dependent
aminotransferase fold; HET: PLP; 2.20A {Salmonella
typhimurium} SCOP: c.67.1.3
Length = 366
Score = 44.5 bits (106), Expect = 1e-05
Identities = 24/100 (24%), Positives = 43/100 (43%), Gaps = 17/100 (17%)
Query: 27 DVDALEAKLKSNPNICAFMVEPIQGE--AGAVVPDDGYLKKVRALCSQYNVLFIADEVQT 84
DV A++A L ++P I + + E G + P + +V AL +Y +I D + +
Sbjct: 118 DVQAIDAILNADPTISHIAM--VHSETTTGMLNP----IDEVGALAHRYGKTYIVDAM-S 170
Query: 85 GLGRTGKLLAIHYEDVRPDIVILG--KALSG--GLYPISA 120
G G + + + D +I K + G G + A
Sbjct: 171 SFG--G--IPMDIAALHIDYLISSANKCIQGVPGFAFVIA 206
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 43.5 bits (102), Expect = 5e-05
Identities = 34/213 (15%), Positives = 68/213 (31%), Gaps = 79/213 (37%)
Query: 52 EAGAVVPDD-------G-YLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPD 103
G + D G Y AL S +V+ I V +++ R
Sbjct: 1749 SKGLIPADATFAGHSLGEY----AALASLADVMSIESLV--------EVVFY-----R-- 1789
Query: 104 IVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMI 163
G + P + + M + PG +A + AL ++E
Sbjct: 1790 ----GMTMQ-VAVPRDELGRSNYGMIAINPGR---------VAASFSQEALQYVVE---- 1831
Query: 164 ENAYKMGEIFRSELSSPANKSKASFKLSS-----GGLKKSINTLILSVSAILEVYDVCIK 218
+ G + N + + + G ++++T+ + +L IK
Sbjct: 1832 RVGKRTGWLV-----EIVN-----YNVENQQYVAAGDLRALDTV----TNVLNF----IK 1873
Query: 219 MKDAGLVTKPISNNIIRLSPALNITEQELREGL 251
+ + I +II L +L++ +E+ L
Sbjct: 1874 L-------QKI--DIIELQKSLSL--EEVEGHL 1895
Score = 37.3 bits (86), Expect = 0.005
Identities = 53/279 (18%), Positives = 88/279 (31%), Gaps = 92/279 (32%)
Query: 19 GYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLK-----KVRALCSQY 73
G++I+ D+ + +NP +G+ + Y V
Sbjct: 1658 GFSIL---DI------VINNPVNLTIHFGGEKGKRIR----ENYSAMIFETIVDGKLKTE 1704
Query: 74 NVLFIADEVQTGL---GRTGKLLAIHYEDVRPDIVILGKAL-----SGGLYPISAVLADD 125
+ +E T G L A + +P + ++ KA S GL P A A
Sbjct: 1705 KIFKEINEHSTSYTFRSEKGLLSATQF--TQPALTLMEKAAFEDLKSKGLIPADATFA-- 1760
Query: 126 EVMGTLVPGTH--GSTYGGNPLACKLAMTALDVI-LEE---------NMIENAYKMGEIF 173
G H G Y LA LA DV+ +E ++ A E+
Sbjct: 1761 --------G-HSLGE-YAA--LAS-LA----DVMSIESLVEVVFYRGMTMQVAVPRDELG 1803
Query: 174 RSELSSPA-NKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPISNN 232
RS A N + + S L+ + + ++E I N
Sbjct: 1804 RSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVE-----------------IVN- 1845
Query: 233 IIRLSPALNI-TEQ-----ELREGLDIIINTINTMAAKK 265
N+ +Q +LR LD + N +N + +K
Sbjct: 1846 -------YNVENQQYVAAGDLR-ALDTVTNVLNFIKLQK 1876
>1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase,
pyridoxal 5'-phosphate, monovalent cation binding site;
HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2
Length = 467
Score = 43.2 bits (101), Expect = 5e-05
Identities = 36/172 (20%), Positives = 58/172 (33%), Gaps = 21/172 (12%)
Query: 27 DVDALEAKLKSN--PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQT 84
D+ L+ + + NI A + AG LK+V + Q+ + + D +
Sbjct: 168 DIKKLKENIAQHGADNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHGIFVVMDSARF 227
Query: 85 G------LGRTGKLLAIHYEDVRPDIVILGKALS-----GGLYPISAVLA--DDEVMGT- 130
R K ++V D+ AL+ L I ++A D+E + T
Sbjct: 228 CENAYFIKARDPKYKNATIKEVIFDMYKYADALTMSAKKDPLLNIGGLVAIRDNEEIFTL 287
Query: 131 ----LVPGTHGSTYGGNPLACKLAMTA-LDVILEENMIENAYKMGEIFRSEL 177
VP TYGG AM L+ EE + + L
Sbjct: 288 ARQRCVPMEGFVTYGGLAGRDMAAMVQGLEEGTEEEYLHYRIGQVKYLGDRL 339
>1fc4_A 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino-3-ketobutyrate
COA ligase, pyridoxal phosphate, COEN transferase,
structural genomics; HET: PLP; 2.00A {Escherichia coli}
SCOP: c.67.1.4
Length = 401
Score = 42.6 bits (101), Expect = 7e-05
Identities = 41/176 (23%), Positives = 66/176 (37%), Gaps = 34/176 (19%)
Query: 24 PYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPD-----DGY---LKKVRALCSQYNV 75
ND+ LEA+LK + D DG LK V L +Y+
Sbjct: 157 ANNDMQELEARLKEAR--------EAGARHVLIATDGVFSMDGVIANLKGVCDLADKYDA 208
Query: 76 LFIADEVQ-TG-LGRTGKLLAIHYE-DVRPDIVI--LGKALSG--GLYPISAVLADDEVM 128
L + D+ G +G G+ + + R DI+ LGKAL G G Y A EV+
Sbjct: 209 LVMVDDSHAVGFVGENGRGSHEYCDVMGRVDIITGTLGKALGGASGGY----TAARKEVV 264
Query: 129 GTLVPGTHGSTY----GGNPLACKLAMTALDVILEEN-MIENAYKMGEIFRSELSS 179
L Y P ++ L+++ + + + + FR ++S+
Sbjct: 265 EWLR--QRSRPYLFSNSLAPAIVAASIKVLEMVEAGSELRDRLWANARQFREQMSA 318
>2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A
{Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A*
Length = 392
Score = 42.6 bits (101), Expect = 7e-05
Identities = 26/99 (26%), Positives = 39/99 (39%), Gaps = 17/99 (17%)
Query: 27 DVDALEAKLKSNPNICAFMVEPIQGE--AGAVVPDDGYLKKVRALCSQYNVLFIADEVQT 84
D A+ LK++P I V + +G + P + + AL S + I D V +
Sbjct: 121 DPQAVADMLKAHPEITVVSV--CHHDTPSGTINP----IDAIGALVSAHGAYLIVDAV-S 173
Query: 85 GLGRTGKLLAIHYEDVRPDIVILG--KALSG--GLYPIS 119
G H ED + DI + G K L GL +
Sbjct: 174 SFGGM----KTHPEDCKADIYVTGPNKCLGAPPGLTMMG 208
>3ez1_A Aminotransferase MOCR family; YP_604413.1, struct genomics, joint
center for structural genomics, JCSG; 2.60A {Deinococcus
geothermalis dsm 11300}
Length = 423
Score = 42.0 bits (99), Expect = 1e-04
Identities = 41/278 (14%), Positives = 85/278 (30%), Gaps = 56/278 (20%)
Query: 27 DVDALEAKLKSNPNICAFMVEPI-QGEAGAVVPDDGYLKKVRALCSQYNVLFIADE---- 81
DVDA+E ++P++ + P G + + + + + AD+
Sbjct: 159 DVDAVERLAGTDPSVKGILFVPTYSNPGGETISLEKARRLAGLQAAAPDFTIFADDAYRV 218
Query: 82 ---VQTGLGRTGKLLAIHYEDVRPDIVI-LG---KALSGGLYPISAVLADDEVMGTLVPG 134
V+ + + + PD K G + V + ++ + L
Sbjct: 219 HHLVEEDRAEPVNFVVLARDAGYPDRAFVFASTSKITFAGAG-LGFVASSEDNIRWLSKY 277
Query: 135 THGSTYGGNPL---ACKLAMTALDVILEENM--IENAYK-----MGEIFRSELSSPANKS 184
+ G N + +T LE M + E+ R+EL
Sbjct: 278 LGAQSIGPNKVEQARHVKFLTEYPGGLEGLMRDHAAIIAPKFRAVDEVLRAEL--GEGGE 335
Query: 185 KASFKLSSGG------LKKSINTLILSVSAILEVYDVCIKMKDAGLV-----------TK 227
A++ L GG + + ++ + AG+
Sbjct: 336 YATWTLPKGGYFISLDTAEPVADRVVK------------LAEAAGVSLTPAGATYPAGQD 383
Query: 228 PISNNIIRLSPALNITEQELREGLDIIINTINTMAAKK 265
P + N +RL+P +E+R + ++ I +
Sbjct: 384 PHNRN-LRLAPT-RPPVEEVRTAMQVVAACIRLATEEY 419
>3tqx_A 2-amino-3-ketobutyrate coenzyme A ligase; energy metabolism,
transferase; HET: PLP; 2.30A {Coxiella burnetii}
Length = 399
Score = 41.4 bits (98), Expect = 2e-04
Identities = 40/178 (22%), Positives = 63/178 (35%), Gaps = 37/178 (20%)
Query: 24 PYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPD-----DGY---LKKVRALCSQYNV 75
N + LEAKLK + D DG LK + L +YN
Sbjct: 155 KNNAMGDLEAKLKEAD--------EKGARFKLIATDGVFSMDGIIADLKSICDLADKYNA 206
Query: 76 LFIADEVQ-TG-LGRTGKLLAIHY--EDVRPDIVI--LGKALSG--GLYPISAVLADDEV 127
L + D+ G +G G+ + D R DI+ LGKAL G G Y E+
Sbjct: 207 LVMVDDSHAVGFIGENGRGTPEYCGVAD-RVDILTGTLGKALGGASGGY----TSGHKEI 261
Query: 128 MGTLVPGTHGSTY----GGNPLACKLAMTALDVILEEN--MIENAYKMGEIFRSELSS 179
+ L Y P+ ++ L+++ E + + + FR+ +
Sbjct: 262 IEWLR--NRSRPYLFSNTVAPVIVATSLKVLELLKTEGPQLRKQLQENSRYFRAGMEK 317
>2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase;
PLP, structural genomics, NPPSFA; HET: PLP; 1.90A
{Pyrococcus horikoshii}
Length = 386
Score = 41.1 bits (97), Expect = 2e-04
Identities = 20/100 (20%), Positives = 39/100 (39%), Gaps = 17/100 (17%)
Query: 27 DVDALEAKLKSNPNICAFMVEPIQGE--AGAVVPDDGYLKKVRALCSQYNVLFIADEVQT 84
+ L+ L+ NP++ A + E G + P L ++ + +++ L D V +
Sbjct: 133 KPEDLDDALRKNPDVEAVTI--TYNETSTGVLNP----LPELAKVAKEHDKLVFVDAV-S 185
Query: 85 GLGRTGKLLAIHYEDVRPDIVILG--KALSG--GLYPISA 120
+G I ++ D+V KA GL +
Sbjct: 186 AMGGA----DIKFDKWGLDVVFSSSQKAFGVPPGLAIGAF 221
>2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas
paucimobilis} PDB: 2w8u_A* 2w8w_A* 2xbn_A* 2w8j_A*
2w8v_A* 2jg2_A* 2jgt_A 2x8u_A*
Length = 427
Score = 39.5 bits (93), Expect = 7e-04
Identities = 22/107 (20%), Positives = 42/107 (39%), Gaps = 31/107 (28%)
Query: 26 NDVDALEAKLKSNPNICAFMVEPIQGEAGA--VVPD-----DGY---LKKVRALCSQYNV 75
N V+ L+ +L P + A VV + G LK++ A+ ++
Sbjct: 178 NSVEDLDKRLGRLP------------KEPAKLVVLEGVYSMLGDIAPLKEMVAVAKKHGA 225
Query: 76 LFIADEV-QTG-LGRTGKLLAIHYEDV--RPDIVI--LGKAL--SGG 114
+ + DE G G G+ + + + + D V+ K++ GG
Sbjct: 226 MVLVDEAHSMGFFGPNGRGVY-EAQGLEGQIDFVVGTFSKSVGTVGG 271
>3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP;
2.58A {Klebsiella pneumoniae}
Length = 411
Score = 38.8 bits (91), Expect = 0.001
Identities = 24/100 (24%), Positives = 36/100 (36%), Gaps = 18/100 (18%)
Query: 27 DVDALEAKLKSNPNICAFMVEPIQGE--AGAVVPDDGYLKKVRALCSQYNVLFIADEVQT 84
D +E +K V QG+ + P L ++ +C +Y+ LF D
Sbjct: 126 TPDQVEDAVKRIRPRLLLTV---QGDTSTTMLQP----LAELGEICRRYDALFYTDAT-A 177
Query: 85 GLGRTGKLLAIHYEDVRPDIVILG--KALSG--GLYPISA 120
LG + + D V G K L G G PI+
Sbjct: 178 SLGGN----PLETDVWGLDAVSAGMQKCLGGPSGTSPITL 213
>1vjo_A Alanine--glyoxylate aminotransferase; 17130350, ALR1004, STR
genomics, JCSG, PSI, protein structure initiative, joint
CE structural genomics; HET: PLP; 1.70A {Nostoc SP}
SCOP: c.67.1.3
Length = 393
Score = 38.8 bits (91), Expect = 0.001
Identities = 22/105 (20%), Positives = 35/105 (33%), Gaps = 28/105 (26%)
Query: 27 DVDALEAKLKSNPNICAFMVEPIQGE--AGAVVPDDGYLKKVRALCSQYNVLFIADEVQT 84
++ L L+++ +V E GA P L+ V LC ++ L + D V T
Sbjct: 147 SLEELRTALETHRPAILALV---HAETSTGARQP----LEGVGELCREFGTLLLVDTV-T 198
Query: 85 GLGRTGKLLAIHYEDVRP-----DIVILG--KALSG--GLYPISA 120
LG + D+ K L G P +
Sbjct: 199 SLGG---------VPIFLDAWGVDLAYSCSQKGLGCSPGASPFTM 234
>3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative
aminotransferase, structural genomics, center for
structural genomics, JCSG; HET: PLP; 1.65A {Mus
musculus} PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A*
Length = 393
Score = 38.4 bits (90), Expect = 0.001
Identities = 25/105 (23%), Positives = 36/105 (34%), Gaps = 28/105 (26%)
Query: 27 DVDALEAKLKSNPNICAFMVEPIQGE--AGAVVPDDGYLKKVRALCSQYNVLFIADEVQT 84
+ +E L + + F+V GE G V P L LC +Y L + D V
Sbjct: 136 TLQEVEEGLAQHKPVLLFLV---HGESSTGVVQP----LDGFGELCHRYQCLLLVDSV-A 187
Query: 85 GLGRTGKLLAIHYEDVRP-----DIVILG--KALSG--GLYPISA 120
LG + DI+ K L+ G+ IS
Sbjct: 188 SLGG---------VPIYMDQQGIDIMYSSSQKVLNAPPGISLISF 223
>3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type
I, acyltransferase, PY phosphate; HET: PLP; 2.30A
{Sphingobacterium multivorum}
Length = 398
Score = 38.3 bits (90), Expect = 0.002
Identities = 36/177 (20%), Positives = 70/177 (39%), Gaps = 43/177 (24%)
Query: 26 NDVDALEAKLKSNPNICAFMVEPIQGEAGA--VVPD-----DGY---LKKVRALCSQYNV 75
N+++ L AKL P E A + D +G L ++ ++ ++++
Sbjct: 157 NNMEDLRAKLSRLP------------EDSAKLICTDGIFSMEGDIVNLPELTSIANEFDA 204
Query: 76 LFIADEV-QTG-LGRTGKLLAIHY--EDVRPDIVI--LGKAL--SGGLYPISAVLADDEV 127
+ D+ G +G G A H+ D D+++ K+L GG V D +V
Sbjct: 205 AVMVDDAHSLGVIGHKGAGTASHFGLND-DVDLIMGTFSKSLASLGGF-----VAGDADV 258
Query: 128 MGTLVPGTHGSTY----GGNPLACKLAMTALDVILEEN-MIENAYKMGEIFRSELSS 179
+ L + + P + + AL++I E IE +K + +++L
Sbjct: 259 IDFLK--HNARSVMFSASMTPASVASTLKALEIIQNEPEHIEKLWKNTDYAKAQLLD 313
>3kki_A CAI-1 autoinducer synthase; quorum sensing, CQSA, P virulence,
acyltransferase, aminotransferase, pyridoxal PHO
transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB:
3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A
Length = 409
Score = 38.4 bits (90), Expect = 0.002
Identities = 42/265 (15%), Positives = 80/265 (30%), Gaps = 76/265 (28%)
Query: 26 NDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPD-----DGY---LKKVRALCSQYNVLF 77
N+ D L ++ + G +V D G L ++ + ++
Sbjct: 173 NNCDHLRMLIQ-------------RHGPGIIVVDSIYSTLGTIAPLAELVNISKEFGCAL 219
Query: 78 IADEVQ-TG-LGRTGKLLAIHYEDV--RPDIVI--LGKAL--SGGLYPISAVLADDEVMG 129
+ DE G G G L + + L K G A+ ++EV
Sbjct: 220 LVDESHSLGTHGPNGAGLL-AELGLTREVHFMTASLAKTFAYRAG-----AIWCNNEVNR 273
Query: 130 TLVPGTHGSTY----GGNPLACKLAMTALDVILEEN-MIENAYKMGEIFRSELSSPANKS 184
+ P T L++I + ++ +M R L S
Sbjct: 274 CVP--FISYPAIFSSTLLPYEAAGLETTLEIIESADNRRQHLDRMARKLRIGL------S 325
Query: 185 KASFKLSSGGLKKSINTLILSVSAI--LEVYD------VCIKMKDAGLVTKPIS------ 230
+ + S S I LE D V ++ G+
Sbjct: 326 QLGLTIRSE-------------SQIIGLETGDERNTEKVRDYLESNGVFGSVFCRPATSK 372
Query: 231 -NNIIRLSPALNITEQELREGLDII 254
NIIRLS ++ ++++ + +++
Sbjct: 373 NKNIIRLSLNSDVNDEQIAKIIEVC 397
>2bwn_A 5-aminolevulinate synthase; tetrapyrrole biosynthesis, heme
biosynthesis, pyridoxal PHOS dependent, transferase,
acyltransferase; HET: LLP; 2.1A {Rhodobacter capsulatus}
SCOP: c.67.1.4 PDB: 2bwo_A* 2bwp_A*
Length = 401
Score = 37.6 bits (88), Expect = 0.003
Identities = 27/110 (24%), Positives = 42/110 (38%), Gaps = 29/110 (26%)
Query: 22 IIPYNDVDALEAKLKSNPN----ICAF-----MVEPIQGEAGAVVPDDGYLKKVRALCSQ 72
I +NDV L + ++ + AF M G P +K++ + +
Sbjct: 158 IFRHNDVAHLRELIAADDPAAPKLIAFESVYSM-------DGDFGP----IKEICDIAEE 206
Query: 73 YNVLFIADEVQ-TGL-GRTGKLLAIHYEDV--RPDIVI--LGKAL--SGG 114
+ L DEV G+ G G +A + + R DI L KA GG
Sbjct: 207 FGALTYIDEVHAVGMYGPRGAGVA-ERDGLMHRIDIFNGTLAKAYGVFGG 255
>2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein,
PLP-dependent transferase; HET: LLP; 1.75A {Aedes
aegypti} PDB: 2hui_A* 2huu_A*
Length = 393
Score = 37.2 bits (87), Expect = 0.004
Identities = 26/105 (24%), Positives = 38/105 (36%), Gaps = 28/105 (26%)
Query: 27 DVDALEAKLKSNPNICAFMVEPIQGE--AGAVVPDDGYLKKVRALCSQYNVLFIADEVQT 84
+D + L + F+ QG+ G + L+ V ALC Q+N L I D V
Sbjct: 132 SLDEIRDALLIHKPSVLFLT---QGDSSTGVLQG----LEGVGALCHQHNCLLIVDTV-A 183
Query: 85 GLGRTGKLLAIHYEDVRP-----DIVILG--KALSG--GLYPISA 120
LG + D + G K L G+ P+S
Sbjct: 184 SLGG---------APMFMDRWEIDAMYTGSQKVLGAPPGITPVSF 219
>2yrr_A Aminotransferase, class V; structural genomics, NPPSFA, national
PROJ protein structural and functional analyses; HET:
PLP; 1.86A {Thermus thermophilus} PDB: 2yri_A*
Length = 353
Score = 37.2 bits (87), Expect = 0.004
Identities = 28/100 (28%), Positives = 37/100 (37%), Gaps = 18/100 (18%)
Query: 27 DVDALEAKLKSNPNICAFMVEPIQGE--AGAVVPDDGYLKKVRALCSQYNVLFIADEVQT 84
D +A+ LK +V GE G + P + + AL + LF D V T
Sbjct: 112 DPEAVARALKRRRYRMVALV---HGETSTGVLNP----AEAIGALAKEAGALFFLDAV-T 163
Query: 85 GLGRTGKLLAIHYEDVRPDIVILG--KALSG--GLYPISA 120
LG + D G K LS GL PI+A
Sbjct: 164 TLGML----PFSMRAMGVDYAFTGSQKCLSAPPGLAPIAA 199
>3ppl_A Aspartate aminotransferase; dimer, PLP-dependent transferase-like
fold structural genomics, joint center for structural
genomics; HET: MSE PLP UNL; 1.25A {Corynebacterium
glutamicum}
Length = 427
Score = 37.0 bits (86), Expect = 0.005
Identities = 48/299 (16%), Positives = 88/299 (29%), Gaps = 69/299 (23%)
Query: 11 NEFGPHMPGYNIIPYN----DVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKV 66
FG M +P N D+DA+E +K+ ++V G V +D K++
Sbjct: 151 ERFGFEMIS---VPMNEDGPDMDAVEELVKNPQVKGMWVVPVFSNPTGFTVTEDV-AKRL 206
Query: 67 RALCSQ-----------YNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVI-LG---KAL 111
A+ + Y V + DE + ++ + P+ K
Sbjct: 207 SAMETAAPDFRVVWDNAYAVHTLTDEFPEVI----DIVGLGEAAGNPNRFWAFTSTSKIT 262
Query: 112 SGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALD--VILEENM--IENAY 167
G +S L E G N + + M +
Sbjct: 263 LAGAG-VSFFLTSAENRKWYTGHAGIRGIGPNKVNQLAHARYFGDAEGVRAVMRKHAASL 321
Query: 168 K-----MGEIFRSELSSPANKSKASFKLSSGG------LKKSINTLILSVSAILEVYDVC 216
+ EI S L+ A + + +GG + + +
Sbjct: 322 APKFNKVLEILDSRLA---EYGVAQWTVPAGGYFISLDVVPGTASRVAE----------- 367
Query: 217 IKMKDAGLVTKPIS----------NNIIRLSPALNITEQELREGLDIIINTINTMAAKK 265
K+AG+ N +RL+P+ +EL +D + + AA+
Sbjct: 368 -LAKEAGIALTGAGSSYPLRQDPENKNLRLAPS-LPPVEELEVAMDGVATCVLLAAAEH 424
>2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway,
transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP:
c.67.1.3 PDB: 2ch2_A*
Length = 396
Score = 35.7 bits (83), Expect = 0.013
Identities = 24/104 (23%), Positives = 38/104 (36%), Gaps = 28/104 (26%)
Query: 27 DVDALEAKLKSNPNICAFMVEPIQGE--AGAVVPDDGYLKKVRALCSQYNVLFIADEVQT 84
++ L ++ + C F+ G+ +G + P L+ V +C Q++ L I D V
Sbjct: 131 SLETLARAIELHQPKCLFLT---HGDSSSGLLQP----LEGVGQICHQHDCLLIVDAV-A 182
Query: 85 GLGRTGKLLAIHYEDVRP-----DIVILG--KALSG--GLYPIS 119
L D V G K L G+ PIS
Sbjct: 183 SLCG---------VPFYMDKWEIDAVYTGAQKVLGAPPGITPIS 217
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 35.6 bits (81), Expect = 0.017
Identities = 44/307 (14%), Positives = 79/307 (25%), Gaps = 92/307 (29%)
Query: 12 EFGPHMPG--Y--NIIPYNDVDALEAKLKS-----NPNICAFMVEPIQGEAGAVVPDDGY 62
+ M + N+ N + + L+ +PN + +
Sbjct: 175 KVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTS---RSDHSSNIKLRIHSIQ 231
Query: 63 LKKVRALCS-QY-NVLFIADEVQT-------GLG-RTGKLLAIHYEDVRPDIVILGKALS 112
+ R L S Y N L + VQ L + LL ++ V D +
Sbjct: 232 AELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKI--LLTTRFKQV-TDFLSAATTTH 288
Query: 113 GGLYPISAVLADDEVMGTLVPGTHGSTY-------GGNPLACKL--AM------------ 151
L S L DEV L+ NP +
Sbjct: 289 ISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWK 348
Query: 152 --------TALDV---ILEENMIENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSIN 200
T ++ +LE + +F P
Sbjct: 349 HVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPT------------------I 390
Query: 201 TLILSVSAIL-------EVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGL-- 251
L +++ +V V K+ LV K + I + P++ + + E
Sbjct: 391 LL-----SLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISI-PSIYLELKVKLENEYA 444
Query: 252 --DIIIN 256
I++
Sbjct: 445 LHRSIVD 451
>3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent
enzymes, purine metabolism transaminases,
aminotransferases; HET: PLP; 2.06A {Bacillus subtilis}
Length = 416
Score = 35.0 bits (81), Expect = 0.018
Identities = 25/105 (23%), Positives = 39/105 (37%), Gaps = 28/105 (26%)
Query: 27 DVDALEAKLKSNPNICAFMVEPIQGE--AGAVVPDDGYLKKVRALCSQYNVLFIADEVQT 84
D + + ++K + + GE G + P LK + C + LFI D V
Sbjct: 124 DPEDIIREIK-KVKPKIVAM--VHGETSTGRIHP----LKAIGEACRTEDALFIVDAV-A 175
Query: 85 GLGRTGKLLAIHYEDVRP-----DIVILG--KALSG--GLYPISA 120
+G +V+ D I G K LS G+ PI+
Sbjct: 176 TIGG---------CEVKVDEWKIDAAIGGTQKCLSVPSGMAPITY 211
>2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme,
pyridoxal-5'-phosphate, domain lyase; 1.85A {Citrobacter
freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 2yct_A* 1tpl_A
2tpl_A* 2ycn_A* 2yhk_A* 2ycp_A* 1c7g_A*
Length = 456
Score = 35.1 bits (80), Expect = 0.019
Identities = 10/59 (16%), Positives = 19/59 (32%), Gaps = 2/59 (3%)
Query: 27 DVDALEAKLKSN--PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQ 83
D+ L+ + NI + AG ++ VR L + + D +
Sbjct: 159 DLKKLQKLIDEKGAENIAYICLAVTVNLAGGQPVSMANMRAVRELTEAHGIKVFYDATR 217
>3zrp_A Serine-pyruvate aminotransferase (AGXT); HET: PLP; 1.75A
{Sulfolobus solfataricus} PDB: 3zrq_A* 3zrr_A*
Length = 384
Score = 33.7 bits (78), Expect = 0.051
Identities = 19/105 (18%), Positives = 34/105 (32%), Gaps = 28/105 (26%)
Query: 27 DVDALEAKLKSNPNICAFMVEPIQGE--AGAVVPDDGYLKKVRALCSQYNVLFIADEVQT 84
+E +++ + E G P +K V +Y L + D V +
Sbjct: 115 KPGEVEEEVR-KSEYKLVAL--THVETSTGVREP----VKDVINKIRKYVELIVVDGV-S 166
Query: 85 GLGRTGKLLAIHYEDVRP-----DIVILG--KALSG--GLYPISA 120
+G E+V+ D+ + KAL GL +
Sbjct: 167 SVGA---------EEVKAEEWNVDVYLTASQKALGSAAGLGLLLL 202
>3f0h_A Aminotransferase; RER070207000802, structural genomics, JOIN for
structural genomics, JCSG; HET: MSE LLP; 1.70A
{Eubacterium rectale}
Length = 376
Score = 32.2 bits (74), Expect = 0.17
Identities = 17/100 (17%), Positives = 31/100 (31%), Gaps = 19/100 (19%)
Query: 27 DVDALEAKLKSNPNICAFMVEPIQGE--AGAVVPDDGYLKKVRALCSQYNVLFIADEVQT 84
+ L N N +V E + + C + N+ F+ D V +
Sbjct: 133 TKEKLYEYD--NQNFTGLLV--NVDETSTAVLYD----TMMIGEFCKKNNMFFVCDCV-S 183
Query: 85 GLGRTGKLLAIHYEDVRPDIVILG--KALSG--GLYPISA 120
+ + D++I G K L+ G+ I
Sbjct: 184 AFL----ADPFNMNECGADVMITGSQKVLACPPGISVIVL 219
>1vp4_A Aminotransferase, putative; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI; HET: MSE PLP; 1.82A {Thermotoga maritima} SCOP:
c.67.1.1
Length = 425
Score = 32.2 bits (74), Expect = 0.17
Identities = 40/227 (17%), Positives = 76/227 (33%), Gaps = 40/227 (17%)
Query: 64 KKVRALCSQYNVLFIADEVQTGLGRTGK-LLAIHYEDVRPDIVI-LG---KALSGGLYPI 118
K + + +Y++ + D+ L G+ + I P+ V+ L K L+ GL I
Sbjct: 211 KALVEIAEKYDLFIVEDDPYGALRYEGETVDPIFKIG-GPERVVLLNTFSKVLAPGLR-I 268
Query: 119 SAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTAL-DVILEENM--IENAYK-----MG 170
V E + +V + + +LA L L E + Y+ M
Sbjct: 269 GMVAGSKEFIRKIVQAKQSADLCSPAITHRLAARYLERYDLLEQLKPTIELYRRKRTVML 328
Query: 171 EIFRSELSSPANKSKASFKLSSGG------LKKSINTLILSVSAILEVYDVCIKMK---- 220
S + S GG L + +T E+++ + K
Sbjct: 329 NALEEYFSDIPG---VKWVKSEGGLFIWLTLPEGFDT--------WEMFEYAKRKKVFYV 377
Query: 221 --DAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINTMAAKK 265
V S + +RLS ++++ EG+ + + +K
Sbjct: 378 PGRVFKVYDEPSPS-MRLSFC-LPPDEKIVEGIKRLREVVLEYGKEK 422
>3g7q_A Valine-pyruvate aminotransferase; NP_462565.1, structur genomics,
joint center for structural genomics, JCSG, prote
structure initiative; HET: MSE; 1.80A {Salmonella
typhimurium}
Length = 417
Score = 30.7 bits (70), Expect = 0.48
Identities = 16/84 (19%), Positives = 27/84 (32%), Gaps = 29/84 (34%)
Query: 13 FGPHMPGYNIIPYND----VDALEAKLK-----------SNPNICAFMVEPIQGEAGAVV 57
F P ++P VD + +NP G V+
Sbjct: 151 FVSARPNIELLPEGQFKYHVDFEHLHIGEETGMICVSRPTNP-------------TGNVI 197
Query: 58 PDDGYLKKVRALCSQYNVLFIADE 81
D+ L K+ L +Q+N+ + D
Sbjct: 198 TDEE-LMKLDRLANQHNIPLVIDN 220
>2oqx_A Tryptophanase; lyase, pyridoxal phosphate, tryptophan catabolism;
HET: CME EPE; 1.90A {Escherichia coli} SCOP: c.67.1.2
PDB: 2c44_A 2v1p_A* 2v0y_A*
Length = 467
Score = 30.4 bits (68), Expect = 0.57
Identities = 11/57 (19%), Positives = 24/57 (42%), Gaps = 4/57 (7%)
Query: 27 DVDALEAKLKSN--PNICAFMVEPIQGEA-GAVVPDDGYLKKVRALCSQYNVLFIAD 80
D++ LE ++ N+ + A G V LK + ++ +Y++ + D
Sbjct: 168 DLEGLERGIEEVGPNNVPYIVATITSNSAGGQPVSLA-NLKAMYSIAKKYDIPVVMD 223
>1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain,
small C-TER domain, open alpha-beta structure.,
transferase; HET: PLP; 2.50A {Escherichia coli} SCOP:
c.67.1.3
Length = 390
Score = 30.6 bits (70), Expect = 0.57
Identities = 7/20 (35%), Positives = 13/20 (65%)
Query: 63 LKKVRALCSQYNVLFIADEV 82
L+ + LC ++ V I+DE+
Sbjct: 184 LEIMADLCERHGVRVISDEI 203
>4dq6_A Putative pyridoxal phosphate-dependent transferas; structural
genomics, niaid, national institute of allergy AN
infectious diseases; HET: PLP; 1.50A {Clostridium
difficile} PDB: 4dgt_A*
Length = 391
Score = 30.6 bits (70), Expect = 0.58
Identities = 9/20 (45%), Positives = 15/20 (75%)
Query: 63 LKKVRALCSQYNVLFIADEV 82
LKK+ +C ++NV I+DE+
Sbjct: 186 LKKLGDICLKHNVKIISDEI 205
>1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate;
HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3
PDB: 1c7o_A*
Length = 399
Score = 30.2 bits (69), Expect = 0.60
Identities = 4/20 (20%), Positives = 14/20 (70%)
Query: 63 LKKVRALCSQYNVLFIADEV 82
L+K++ + + +++ +DE+
Sbjct: 186 LQKIKDIVLKSDLMLWSDEI 205
>3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative
PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A
{Lactobacillus delbrueckii subsp}
Length = 391
Score = 30.2 bits (69), Expect = 0.61
Identities = 8/20 (40%), Positives = 16/20 (80%)
Query: 63 LKKVRALCSQYNVLFIADEV 82
+K++ LC+++ VL I+DE+
Sbjct: 182 VKRIAELCAKHQVLLISDEI 201
>3b1d_A Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococcus anginosus}
PDB: 3b1c_A* 3b1e_A*
Length = 392
Score = 30.2 bits (69), Expect = 0.63
Identities = 6/20 (30%), Positives = 16/20 (80%)
Query: 63 LKKVRALCSQYNVLFIADEV 82
L+++ LC +++V+ ++DE+
Sbjct: 186 LEQIGHLCQKHHVILVSDEI 205
>3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase;
PLP-dependent transferase-like fold, structural
genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae}
Length = 377
Score = 30.2 bits (69), Expect = 0.64
Identities = 5/20 (25%), Positives = 11/20 (55%)
Query: 63 LKKVRALCSQYNVLFIADEV 82
L ++ L +Y+ + DE+
Sbjct: 172 LNELCDLAHRYDARVLVDEI 191
>3kax_A Aminotransferase, classes I and II; PLP, C-S lyase, transf
structural genomics, center for structural genomics of
INFE diseases, csgid; HET: LLP MSE PLP; 1.70A {Bacillus
anthracis str} PDB: 3t32_A*
Length = 383
Score = 30.2 bits (69), Expect = 0.64
Identities = 10/20 (50%), Positives = 17/20 (85%)
Query: 63 LKKVRALCSQYNVLFIADEV 82
L K+ +LC++YNV+ +ADE+
Sbjct: 178 LTKLGSLCTKYNVIVVADEI 197
>3l8a_A METC, putative aminotransferase, probable beta-cystathi;
beta-cystathionase, lyase; HET: PLP; 1.54A
{Streptococcus mutans}
Length = 421
Score = 30.2 bits (69), Expect = 0.64
Identities = 7/20 (35%), Positives = 14/20 (70%)
Query: 63 LKKVRALCSQYNVLFIADEV 82
L K+ LC ++ V+ ++DE+
Sbjct: 216 LIKIAELCKKHGVILVSDEI 235
>3e9k_A Kynureninase; kynurenine-L-hydrolase, kynurenine hydrolase,
pyridoxal-5'-phosphate, inhibitor complex, 3-hydroxy
hippur hydroxyhippuric acid, PLP; HET: PLP 3XH; 1.70A
{Homo sapiens} PDB: 2hzp_A*
Length = 465
Score = 30.0 bits (67), Expect = 0.74
Identities = 32/286 (11%), Positives = 83/286 (29%), Gaps = 56/286 (19%)
Query: 15 PHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYN 74
G + D+ + K + + + + G + +
Sbjct: 191 KPREGEETLRIEDILEVIEKEGDSIAVI--LFSGVHFYTGQHFN----IPAITKAGQAKG 244
Query: 75 VLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILG--KALSGGLYPISAVLADDEVMGTLV 132
D + ++ D D K L+ G I+ ++ T+
Sbjct: 245 CYVGFDLAHAV-----GNVELYLHDWGVDFACWCSYKYLNAGAGGIAGAFIHEKHAHTIK 299
Query: 133 PGTHGSTYG------------------------GNP--LACKLAMTALDVILE---ENMI 163
P +G NP L +L++ + + +
Sbjct: 300 P-ALVGWFGHELSTRFKMDNKLQLIPGVCGFRISNPPILLVCSLHASLEIFKQATMKALR 358
Query: 164 ENAYKMGEIFRSELSSPANKSKASFKLSSGGLKKSINT--------LILSVSAILEVYDV 215
+ + + + N K + I T L+++ + DV
Sbjct: 359 KKSVLLTGYLEYLIK--HNYGKDKAATKKPVVN--IITPSHVEERGCQLTITFSVPNKDV 414
Query: 216 CIKMKDAGLVTKPISNNIIRLSPA-LNITEQELREGLDIIINTINT 260
+++ G+V + N IR++P L + ++ + +++ + +++
Sbjct: 415 FQELEKRGVVCDKRNPNGIRVAPVPLYNSFHDVYKFTNLLTSILDS 460
>2zyj_A Alpha-aminodipate aminotransferase; alpha-aminoadipate
aminotransferase; HET: PGU; 1.67A {Thermus thermophilus}
PDB: 2egy_A* 2dtv_A* 2zg5_A* 2zp7_A* 2z1y_A* 3cbf_A*
Length = 397
Score = 29.5 bits (67), Expect = 1.2
Identities = 48/264 (18%), Positives = 87/264 (32%), Gaps = 45/264 (17%)
Query: 27 DVDALEAKLKSNPNICAFMVEP-IQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTG 85
D+DALE LK + P Q G + P K++ + + ++ + D+
Sbjct: 150 DLDALEEVLKRER-PRFLYLIPSFQNPTGGLTPLPA-RKRLLQMVMERGLVVVEDDAYRE 207
Query: 86 LGRTGK----LLAIHYEDVRPDIVILG---KALSGGLYPISAVLADDEVMGTLVPGTHGS 138
L L + E P ++ LG K LS GL ++ +A E + LV G+
Sbjct: 208 LYFGEARLPSLFELAREAGYPGVIYLGSFSKVLSPGLR-VAFAVAHPEALQKLVQAKQGA 266
Query: 139 TYGGNPLACKLAMTALDVILEENM--IENAYK-----MGEIFRSELSSPANKSKASFKLS 191
L L L E + + Y+ M E+ + +
Sbjct: 267 DLHTPMLNQMLVHELLKEGFSERLERVRRVYREKAQAMLHALDREVP-----KEVRYTRP 321
Query: 192 SGG------LKKSINTLILSVSAILEVYDVCIKMK------DAGLVTKPISNNIIRLSPA 239
GG L K ++ ++ ++ N +RLS A
Sbjct: 322 KGGMFVWMELPKGLSA--------EGLFRRALEENVAFVPGGPFFANGGGENT-LRLSYA 372
Query: 240 LNITEQELREGLDIIINTINTMAA 263
+ + + EG+ + + + A
Sbjct: 373 -TLDREGIAEGVRRLGRALKGLLA 395
>3bc8_A O-phosphoseryl-tRNA(SEC) selenium transferase; disorder-order
transition, phosphate-loop, pyridoxal phospha
selenocysteine synthase (SECS, sepsecs); HET: LLP; 1.65A
{Mus musculus} SCOP: c.67.1.9 PDB: 3bca_A* 3bcb_A*
Length = 450
Score = 29.2 bits (65), Expect = 1.4
Identities = 12/57 (21%), Positives = 26/57 (45%), Gaps = 6/57 (10%)
Query: 27 DVDALEAKLKSNP--NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADE 81
D+ A+EAK++ +I VPD L+++ +C+ Y++ + +
Sbjct: 183 DLKAVEAKIQELGPEHILCLH--STTACFAPRVPDR--LEELAVICANYDIPHVVNN 235
>3if2_A Aminotransferase; YP_265399.1, structura genomics, joint center for
structural genomics, JCSG, prote structure initiative,
PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4}
Length = 444
Score = 28.9 bits (65), Expect = 1.7
Identities = 14/89 (15%), Positives = 27/89 (30%), Gaps = 16/89 (17%)
Query: 27 DVDALEAKLKSNPNICAFMVEPI-QGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTG 85
D +ALE + G V+ D+ + + + +Y++ I D
Sbjct: 192 DFEALENLPALKEGRIGAICCSRPTNPTGNVLTDEE-MAHLAEIAKRYDIPLIIDNA--- 247
Query: 86 LGRTGKLLAIHYEDVRPDIVILGKALSGG 114
Y P+I+ L+
Sbjct: 248 -----------YGMPFPNIIYSDAHLNWD 265
>2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine
biosynthesis, seven-stranded BETE-strand, PYR
5'-phosphate; HET: PLP; 2.50A {Methanococcus
maripaludis} SCOP: c.67.1.9
Length = 456
Score = 28.9 bits (64), Expect = 1.7
Identities = 21/166 (12%), Positives = 48/166 (28%), Gaps = 17/166 (10%)
Query: 27 DVDALEAKLKSNP---NICAFMVEPIQGEAGAV---VPDDGYLKKVRALCSQYNVLFIAD 80
V+ +E +K N + DD + ++ +C Y++ I +
Sbjct: 215 PVEDIENAIKKEIELGNRPC-----VLSTLTFFPPRNSDD--IVEIAKICENYDIPHIIN 267
Query: 81 EVQTGLGRTGKLLAIHYEDVRPDIV--ILGKALSGGLYPISAVLA-DDEVMGTLVPGTHG 137
R D V K L V + D E + + G
Sbjct: 268 GAYAIQNNYYLEKLKKAFKYRVDAVVSSSDKNL-LTPIGGGLVYSTDAEFIKEISLSYPG 326
Query: 138 STYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSSPANK 183
+ +++ ++ +++N ++ L+ + K
Sbjct: 327 RASATPVVNTLVSLLSMGSKNYLELVKNQKNSKKLLDELLNDLSKK 372
>3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint CE
structural genomics, JCSG, protein structure initiative;
HET: LLP MES; 1.91A {Neisseria meningitidis Z2491}
Length = 396
Score = 28.7 bits (65), Expect = 1.9
Identities = 9/28 (32%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Query: 54 GAVVPDDGYLKKVRALCSQYNVLFIADE 81
G+V+ D K+V L +Y + +DE
Sbjct: 182 GSVLDLD-GWKEVFDLQDKYGFIIASDE 208
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.0 bits (61), Expect = 2.0
Identities = 10/47 (21%), Positives = 16/47 (34%), Gaps = 23/47 (48%)
Query: 196 KKSINTLILSVSAILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNI 242
K+++ L A L++Y S +PAL I
Sbjct: 19 KQALKKL----QASLKLY-------------ADDS------APALAI 42
Score = 26.5 bits (57), Expect = 7.3
Identities = 7/34 (20%), Positives = 17/34 (50%), Gaps = 7/34 (20%)
Query: 159 EENMI---ENAYKMGEIFRSELSSPANKSKASFK 189
E+ + + + K+ + + S+PA KA+ +
Sbjct: 18 EKQALKKLQASLKL---YADD-SAPALAIKATME 47
>3e2y_A Kynurenine-oxoglutarate transaminase 3; alpha beta protein, PLP
dependent protein, aminotransferase, pyridoxal
phosphate, transferase; HET: GLN PMP; 2.26A {Mus
musculus} PDB: 2zjg_A* 3e2f_A* 3e2z_A*
Length = 410
Score = 28.4 bits (64), Expect = 2.4
Identities = 18/91 (19%), Positives = 27/91 (29%), Gaps = 29/91 (31%)
Query: 3 ITTDPTSYNEFGPHMPGYNIIPYNDVDALEAKLKS-----------NPNICAFMVEPIQG 51
I + + D LE+K S NP
Sbjct: 136 IPLRSKPTDGMKWTSSDWTF----DPRELESKFSSKTKAIILNTPHNP------------ 179
Query: 52 EAGAVVPDDGYLKKVRALCSQYNVLFIADEV 82
G V L+ + LC +++ L I+DEV
Sbjct: 180 -LGKVYTRQE-LQVIADLCVKHDTLCISDEV 208
>2zc0_A Alanine glyoxylate transaminase; alanine:glyoxylate
aminotransferase, archaea, thermococcus L transferase;
HET: PMP; 2.30A {Thermococcus litoralis}
Length = 407
Score = 28.4 bits (64), Expect = 2.8
Identities = 35/226 (15%), Positives = 81/226 (35%), Gaps = 41/226 (18%)
Query: 64 KKVRALCSQYNVLFIADEVQTGLGRTGK-LLAIHYEDVRPDIVILG---KALSGGLYPIS 119
K + + S+Y++L I D + G ++ + D +++ G K L G I
Sbjct: 198 KALLEIASKYDLLIIEDTAYNFMRYEGGDIVPLKALDNEGRVIVAGTLSKVLGTGFR-IG 256
Query: 120 AVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTAL-DVILEENMIEN---AYK-----MG 170
++A+ E++ ++ + ++ +A+ L E+ +E YK M
Sbjct: 257 WIIAEGEILKKVLMQKQPIDFCAPAISQYIALEYLKRGYFEKYHLEGALLGYKEKRDIML 316
Query: 171 EIFRSELSSPANKSKASFKLSSGG------LKKSINTLILSVSAILEVYDVCIKMKDAGL 224
+ + L + A F G L + + + + ++ + +
Sbjct: 317 KALENHLPN------AEFTKPIAGMFVMFFLPEGADG--------ISFANELMEREGVVV 362
Query: 225 V------TKPISNNIIRLSPALNITEQELREGLDIIINTINTMAAK 264
V T N IRL+ + +++E+ G+ + +
Sbjct: 363 VPGKPFYTDESGKNAIRLNFS-RPSKEEIPIGIKKLAKLYKEKFGE 407
>3ezs_A Aminotransferase ASPB; NP_207418.1, structural genomics, JOI for
structural genomics, JCSG; HET: MSE; 2.19A {Helicobacter
pylori 26695}
Length = 376
Score = 28.3 bits (64), Expect = 2.9
Identities = 6/28 (21%), Positives = 12/28 (42%), Gaps = 1/28 (3%)
Query: 54 GAVVPDDGYLKKVRALCSQYNVLFIADE 81
G + + L L +++ + I DE
Sbjct: 168 GRTLSLE-ELISWVKLALKHDFILINDE 194
>3hl2_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine,
sepsecs, protein-RNA complex, alternative splicing,
cytoplasm, protein biosynthesis, pyridoxal phosphate,
selenium; HET: PLR SEP; 2.81A {Homo sapiens}
Length = 501
Score = 28.1 bits (62), Expect = 3.7
Identities = 13/57 (22%), Positives = 25/57 (43%), Gaps = 6/57 (10%)
Query: 27 DVDALEAKLKSNP--NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADE 81
D+ A+EAK++ I VPD L+++ +C+ Y++ I +
Sbjct: 201 DLKAVEAKVQELGPDCILCIH--STTSCFAPRVPDR--LEELAVICANYDIPHIVNN 253
>3b8x_A WBDK, pyridoxamine 5-phosphate-dependent dehydrase; aspartate
aminotransferase, colitose, perosamine, O-antigen,
pyridoxal phosphate,; HET: G4M; 1.70A {Escherichia coli}
PDB: 2gms_A* 2gmu_A* 2r0t_A* 3gr9_A*
Length = 390
Score = 27.9 bits (63), Expect = 4.1
Identities = 8/61 (13%), Positives = 25/61 (40%), Gaps = 13/61 (21%)
Query: 20 YNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIA 79
NI D+++L+ + + A + + G P++ ++ + +++ +
Sbjct: 114 LNI----DIESLKEAV--TDSTKAILTVNLLG-----NPNN--FDEINKIIGGRDIILLE 160
Query: 80 D 80
D
Sbjct: 161 D 161
>1xi3_A Thiamine phosphate pyrophosphorylase; structural genomics,
southeast collaboratory for structural genomics,
hyperthermophIle; 1.70A {Pyrococcus furiosus} SCOP:
c.1.3.1
Length = 215
Score = 27.2 bits (61), Expect = 5.7
Identities = 6/15 (40%), Positives = 9/15 (60%)
Query: 64 KKVRALCSQYNVLFI 78
K +R L +Y+ LF
Sbjct: 60 KTLRQLTREYDALFF 74
>3b46_A Aminotransferase BNA3; kynurenine aminotransferase, LLP, PLP,
cytoplasm, mitochondrion, pyridoxal phosphate; HET: LLP;
2.00A {Saccharomyces cerevisiae}
Length = 447
Score = 27.3 bits (61), Expect = 6.3
Identities = 8/20 (40%), Positives = 14/20 (70%)
Query: 63 LKKVRALCSQYNVLFIADEV 82
L + +C ++NV+ I+DEV
Sbjct: 223 LTTLGNICVKHNVVIISDEV 242
>1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic
acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP;
HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB:
1yiy_A* 2r5c_A* 2r5e_A*
Length = 429
Score = 27.3 bits (61), Expect = 6.5
Identities = 10/20 (50%), Positives = 15/20 (75%)
Query: 63 LKKVRALCSQYNVLFIADEV 82
L+ V LC ++NVL ++DEV
Sbjct: 204 LEVVANLCKKWNVLCVSDEV 223
>3fvs_A Kynurenine--oxoglutarate transaminase 1; alpha beta protein, PLP
dependent protein, aminotransferase, pyridoxal
phosphate, transferase; HET: LLP; 1.50A {Homo sapiens}
PDB: 3fvu_A* 3fvx_A* 1w7l_A* 1w7m_A* 1w7n_A*
Length = 422
Score = 26.9 bits (60), Expect = 7.7
Identities = 10/20 (50%), Positives = 15/20 (75%)
Query: 63 LKKVRALCSQYNVLFIADEV 82
L+ V +LC Q++V+ I DEV
Sbjct: 196 LELVASLCQQHDVVCITDEV 215
>1v2d_A Glutamine aminotransferase; PLP, riken structural
genomics/proteomics initi RSGI, structural genomics;
HET: PLP; 1.90A {Thermus thermophilus} SCOP: c.67.1.1
PDB: 1v2e_A* 1v2f_A*
Length = 381
Score = 26.8 bits (60), Expect = 8.2
Identities = 6/20 (30%), Positives = 12/20 (60%)
Query: 63 LKKVRALCSQYNVLFIADEV 82
L+ + L +++ I+DEV
Sbjct: 174 LEAIARLARAHDLFLISDEV 193
>2fnu_A Aminotransferase; protein-product complex, structural genomics,
montreal-kings bacterial structural genomics initiative,
BSGI; HET: PMP UD1; 1.50A {Helicobacter pylori} SCOP:
c.67.1.4 PDB: 2fni_A* 2fn6_A*
Length = 375
Score = 26.7 bits (60), Expect = 8.8
Identities = 15/68 (22%), Positives = 26/68 (38%), Gaps = 23/68 (33%)
Query: 18 PGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDD--GY---LKKVRALCSQ 72
NI D ALE + A+V D G ++ V+ LC +
Sbjct: 105 NDGNI----DELALEKLINERTK--------------AIVSVDYAGKSVEVESVQKLCKK 146
Query: 73 YNVLFIAD 80
+++ F++D
Sbjct: 147 HSLSFLSD 154
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.135 0.382
Gapped
Lambda K H
0.267 0.0782 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,069,609
Number of extensions: 252531
Number of successful extensions: 763
Number of sequences better than 10.0: 1
Number of HSP's gapped: 669
Number of HSP's successfully gapped: 131
Length of query: 266
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 174
Effective length of database: 4,133,061
Effective search space: 719152614
Effective search space used: 719152614
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (25.2 bits)