RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy6547
(266 letters)
>d2byla1 c.67.1.4 (A:36-439) Ornithine aminotransferase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 404
Score = 222 bits (566), Expect = 3e-71
Identities = 143/258 (55%), Positives = 191/258 (74%), Gaps = 6/258 (2%)
Query: 1 MLITTDPTSYNEFGPHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDD 60
+ +TDPTSY+ FGP MPG++IIPYND+ ALE L+ +PN+ AFMVEPIQGEAG VVPD
Sbjct: 150 ISSSTDPTSYDGFGPFMPGFDIIPYNDLPALERALQ-DPNVAAFMVEPIQGEAGVVVPDP 208
Query: 61 GYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISA 120
GYL VR LC+++ VLFIADE+QTGL RTG+ LA+ YE+VRPDIV+LGKALSGGLYP+SA
Sbjct: 209 GYLMGVRELCTRHQVLFIADEIQTGLARTGRWLAVDYENVRPDIVLLGKALSGGLYPVSA 268
Query: 121 VLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSSP 180
VL DD++M T+ PG H STYGGNPL C++A+ AL+V+ EEN+ ENA K+G I R+EL
Sbjct: 269 VLCDDDIMLTIKPGEHFSTYGGNPLGCRVAIAALEVLEEENLAENADKLGIILRNELMKL 328
Query: 181 ANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPISNNIIRLSPAL 240
+ + + GL +N +++ + + + VC++++D GL+ KP +IIR +P L
Sbjct: 329 PSDVVTAVR--GKGL---LNAIVIKETKDWDAWKVCLRLRDNGLLAKPTHGDIIRFAPPL 383
Query: 241 NITEQELREGLDIIINTI 258
I E ELRE ++II TI
Sbjct: 384 VIKEDELRESIEIINKTI 401
>d1z7da1 c.67.1.4 (A:7-410) Ornithine aminotransferase {Plasmodium
yoelii yoelii [TaxId: 73239]}
Length = 404
Score = 218 bits (555), Expect = 1e-69
Identities = 123/246 (50%), Positives = 177/246 (71%), Gaps = 5/246 (2%)
Query: 13 FGPHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQ 72
FGP P ++ +PY+D++ALE +LK +PN+CAF+VEPIQGEAG +VP D YL+ V +C +
Sbjct: 160 FGPFAPQFSKVPYDDLEALEEELK-DPNVCAFIVEPIQGEAGVIVPSDNYLQGVYDICKK 218
Query: 73 YNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLV 132
YNVLF+ADEVQTGLGRTGKLL +H+ +V+PD+++LGKALSGG YPISAVLA+D++M +
Sbjct: 219 YNVLFVADEVQTGLGRTGKLLCVHHYNVKPDVILLGKALSGGHYPISAVLANDDIMLVIK 278
Query: 133 PGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSSPANKSKASFKLSS 192
PG HGSTYGGNPLA + + AL+V++ E + ENA K+G F L SK +
Sbjct: 279 PGEHGSTYGGNPLAASICVEALNVLINEKLCENAEKLGGPFLENLKRELKDSKIVRDVRG 338
Query: 193 GGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLD 252
GL + + + ++ V D+C+K+K+ GL+T+ + + IRL+P L IT+++L E +
Sbjct: 339 KGL---LCAIEF-KNELVNVLDICLKLKENGLITRDVHDKTIRLTPPLCITKEQLDECTE 394
Query: 253 IIINTI 258
II+ T+
Sbjct: 395 IIVKTV 400
>d1vefa1 c.67.1.4 (A:9-395) Acetylornithine/acetyl-lysine
aminotransferase ArgD {Thermus thermophilus [TaxId:
274]}
Length = 387
Score = 186 bits (472), Expect = 2e-57
Identities = 74/254 (29%), Positives = 123/254 (48%), Gaps = 11/254 (4%)
Query: 1 MLITTDPTSYNEFGPHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDD 60
+ +T +P F P + IPYNDV+AL+ + + A ++EP+QGE G
Sbjct: 140 LSVTWEPKYREPFLPLVEPVEFIPYNDVEALKRAV--DEETAAVILEPVQGEGGVRPATP 197
Query: 61 GYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISA 120
+L+ R + + L I DE+QTG+GRTGK A + + PDI+ L KAL GG P+
Sbjct: 198 EFLRAAREITQEKGALLILDEIQTGMGRTGKRFAFEHFGIVPDILTLAKALGGG-VPLGV 256
Query: 121 VLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSSP 180
+ +EV ++ G HG+T+GGNPLA + A+ + + E A ++G F +L +
Sbjct: 257 AVMREEVARSMPKGGHGTTFGGNPLAMAAGVAAIRYLERTRLWERAAELGPWFMEKLRAI 316
Query: 181 ANKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPISNNIIRLSPAL 240
+ + GL + L L A + K+ ++ +IR P L
Sbjct: 317 PSPKIREVR--GMGL---MVGLELKEKA---APYIARLEKEHRVLALQAGPTVIRFLPPL 368
Query: 241 NITEQELREGLDII 254
I +++L ++ +
Sbjct: 369 VIEKEDLERVVEAV 382
>d1sffa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase,
GABA-aminotransferase {Escherichia coli [TaxId: 562]}
Length = 425
Score = 168 bits (425), Expect = 4e-50
Identities = 73/258 (28%), Positives = 126/258 (48%), Gaps = 14/258 (5%)
Query: 16 HMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNV 75
+ + + +I A ++EP+QGE G +++++RALC ++ +
Sbjct: 174 LHGISEDDAIASIHRIFKNDAAPEDIAAIVIEPVQGEGGFYASSPAFMQRLRALCDEHGI 233
Query: 76 LFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGT 135
+ IADEVQ+G GRTG L A+ V PD+ K+++GG +P++ V EVM + PG
Sbjct: 234 MLIADEVQSGAGRTGTLFAMEQMGVAPDLTTFAKSIAGG-FPLAGVTGRAEVMDAVAPGG 292
Query: 136 HGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSSPANKSKASFKLSSGGL 195
G TY GNP+AC A+ L V +EN+++ A +G+ + L + A K + G
Sbjct: 293 LGGTYAGNPIACVAALEVLKVFEQENLLQKANDLGQKLKDGLLAIAEKHPEIGDVRGLGA 352
Query: 196 KKSINTLILSVSAILEVYD------VCIKMKDAGLVTKPI--SNNIIRLSPALNITEQEL 247
+ + L D + + +D GL+ N++R+ L I + ++
Sbjct: 353 ---MIAIELFEDGDHNKPDAKLTAEIVARARDKGLILLSCGPYYNVLRILVPLTIEDAQI 409
Query: 248 REGLDIIINTINTMAAKK 265
R+GL+II + AK+
Sbjct: 410 RQGLEIISQCFD--EAKQ 425
>d2gsaa_ c.67.1.4 (A:) Glutamate-1-semialdehyde aminomutase
(aminotransferase) {Synechococcus sp., strain GR6
[TaxId: 1131]}
Length = 427
Score = 133 bits (336), Expect = 4e-37
Identities = 61/267 (22%), Positives = 107/267 (40%), Gaps = 16/267 (5%)
Query: 7 PTSYNEFGPHMPGYNIIPYNDVDALEAKLKSNPN-ICAFMVEPIQGEAGAVVPDDGYLKK 65
P+S PYND++A++A NP I ++EPI G +G +VPD G+L+
Sbjct: 165 PSSPGVPKKTTANTLTTPYNDLEAVKALFAENPGEIAGVILEPIVGNSGFIVPDAGFLEG 224
Query: 66 VRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADD 125
+R + +++ L + DEV TG R V PD+ LGK + GG P+ A
Sbjct: 225 LREITLEHDALLVFDEVMTG-FRIAYGGVQEKFGVTPDLTTLGKIIGGG-LPVGAYGGKR 282
Query: 126 EVMGTLVPG---THGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSSPAN 182
E+M + P T GNPLA + L+++ + E ++ + L + A
Sbjct: 283 EIMQLVAPAGPMYQAGTLSGNPLAMTAGIKTLELLRQPGTYEYLDQITKRLSDGLLAIAQ 342
Query: 183 KSKASFKLSSGGLKKSINTLILSV--------SAILEVYDVCIKMKDAGLVTKPISNNII 234
++ + V S + + M + G+ P +
Sbjct: 343 ETGHAACGGQVSGMFGFFFTEGPVHNYEDAKKSDLQKFSRFHRGMLEQGIYLAP--SQFE 400
Query: 235 RLSPALNITEQELREGLDIIINTINTM 261
+L TE+++ L ++ +
Sbjct: 401 AGFTSLAHTEEDIDATLAAARTVMSAL 427
>d1s0aa_ c.67.1.4 (A:) Adenosylmethionine-8-amino-7-oxononanoate
aminotransferase, BioA {Escherichia coli [TaxId: 562]}
Length = 429
Score = 122 bits (306), Expect = 6e-33
Identities = 66/257 (25%), Positives = 114/257 (44%), Gaps = 14/257 (5%)
Query: 9 SYNEFGPHMPGYNIIPYNDVDALEAKLKSNP-NICAFMVEPIQGEAGA-VVPDDGYLKKV 66
+ P D+ + ++ I A ++EPI AG + +LK++
Sbjct: 172 NLFAPAPQSRMDGEWDERDMVGFARLMAAHRHEIAAVIIEPIVQGAGGMRMYHPEWLKRI 231
Query: 67 RALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDE 126
R +C + +L IADE+ TG GRTGKL A + ++ PDI+ LGKAL+GG +SA L E
Sbjct: 232 RKICDREGILLIADEIATGFGRTGKLFACEHAEIAPDILCLGKALTGGTMTLSATLTTRE 291
Query: 127 VMGTLVPG-----THGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSSPA 181
V T+ G HG T+ GNPLAC A +L ++ + + + R +L+
Sbjct: 292 VAETISNGEAGCFMHGPTFMGNPLACAAANASLAILESGDWQQQVADIEVQLREQLAPAR 351
Query: 182 NKSKASFKLSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPISNNIIRLSPALN 241
+ + G + ++ + + + + + G+ +P +I L P
Sbjct: 352 DAEMVADVRVLGAI------GVVETTHPVNMAALQKFFVEQGVWIRP-FGKLIYLMPPYI 404
Query: 242 ITEQELREGLDIIINTI 258
I Q+L+ + +
Sbjct: 405 ILPQQLQRLTAAVNRAV 421
>d1zoda1 c.67.1.4 (A:3-433) Dialkylglycine decarboxylase
{Pseudomonas cepacia [TaxId: 292]}
Length = 431
Score = 103 bits (256), Expect = 5e-26
Identities = 64/257 (24%), Positives = 107/257 (41%), Gaps = 8/257 (3%)
Query: 10 YNEFGPHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRAL 69
Y Y+ + D +S+ N+ AF+ EPI G + DGY+ ++
Sbjct: 171 YRPRFERNGAYDYLAELDYAFDLIDRQSSGNLAAFIAEPILSSGGIIELPDGYMAALKRK 230
Query: 70 CSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMG 129
C +L I DE QTG+GRTG + A + V PDI+ L K L GL + V +
Sbjct: 231 CEARGMLLILDEAQTGVGRTGTMFACQRDGVTPDILTLSKTLGAGLPLAAIVTSAAIEER 290
Query: 130 TLVPGT-HGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSSPANKSKASF 188
G +T+ +PL + + LDV+ + ++ A MG+ R L +
Sbjct: 291 AHELGYLFYTTHVSDPLPAAVGLRVLDVVQRDGLVARANVMGDRLRRGLLDLMERFDCIG 350
Query: 189 KLSSGGL------KKSINTLILSVSAILEVYDVCIKMK-DAGLVTKPISNNIIRLSPALN 241
+ GL K T + ++ C+ + +V P + R++P L
Sbjct: 351 DVRGRGLLLGVEIVKDRRTKEPADGLGAKITRECMNLGLSMNIVQLPGMGGVFRIAPPLT 410
Query: 242 ITEQELREGLDIIINTI 258
++E E+ GL ++ I
Sbjct: 411 VSEDEIDLGLSLLGQAI 427
>d1ohwa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase,
GABA-aminotransferase {Pig (Sus scrofa) [TaxId: 9823]}
Length = 461
Score = 75.8 bits (185), Expect = 2e-16
Identities = 44/251 (17%), Positives = 88/251 (35%), Gaps = 11/251 (4%)
Query: 10 YNEFGPHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVV-PDDGYLKKVRA 68
EF +V+ L K + A ++ G D + +K+R
Sbjct: 217 LEEFVKENQQEEARCLEEVEDLIVKYRKKKKTVAGIIVEPIQSEGGDNHASDDFFRKLRD 276
Query: 69 LCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVM 128
+ ++ F+ DEVQTG G TGK A + + ++ + ++ E
Sbjct: 277 ISRKHGCAFLVDEVQTGGGSTGKFWAHEHWGLDDPADVMTFSK----KMMTGGFFHKEEF 332
Query: 129 GTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSSPANKSKASF 188
P +T+ G+P L +++I E+++ NA G++ + L +
Sbjct: 333 RPNAPYRIFNTWLGDPSKNLLLAEVINIIKREDLLSNAAHAGKVLLTGLLDLQARYPQFI 392
Query: 189 KLSSG-GLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQEL 247
G G + +I + ++ G++ + IR P L +
Sbjct: 393 SRVRGRGT---FCSFDTPDESIRN--KLISIARNKGVMLGGCGDKSIRFRPTLVFRDHHA 447
Query: 248 REGLDIIINTI 258
L+I + +
Sbjct: 448 HLFLNIFSDIL 458
>d2v1pa1 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptophanase)
{Escherichia coli [TaxId: 562]}
Length = 467
Score = 64.9 bits (157), Expect = 1e-12
Identities = 25/197 (12%), Positives = 50/197 (25%), Gaps = 24/197 (12%)
Query: 5 TDPTSYNEFGPHMPGYNIIPYN-DVDALEAKLKSN--PNICAFMVEPIQGEAGAVVPDDG 61
T Y + N D++ LE ++ N+ + AG
Sbjct: 145 TVRNVYIKEAFDTGVRYDFKGNFDLEGLERGIEEVGPNNVPYIVATITSNSAGGQPVSLA 204
Query: 62 YLKKVRALCSQYNVLFIADEVQT-GLGRTGKLLAIHYEDVRPDIVI-------------L 107
LK + ++ +Y++ + D + K Y+D + +
Sbjct: 205 NLKAMYSIAKKYDIPVVMDSARFAENAYFIKQREAEYKDWTIEQITRETYKYADMLAMSA 264
Query: 108 GKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTA-------LDVILEE 160
K + + + D T G P L A L +
Sbjct: 265 KKDAMVPMGGLLCMKDDSFFDVYTECRTLCVVQEGFPTYGGLEGGAMERLAVGLYDGMNL 324
Query: 161 NMIENAYKMGEIFRSEL 177
+ + + L
Sbjct: 325 DWLAYRIAQVQYLVDGL 341
>d1ax4a_ c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanase)
{Proteus vulgaris [TaxId: 585]}
Length = 465
Score = 57.6 bits (138), Expect = 3e-10
Identities = 44/308 (14%), Positives = 76/308 (24%), Gaps = 43/308 (13%)
Query: 1 MLITTDPTSYNEFGPHMPGYNIIP----YNDVDALEAKLKS--NPNICAFMVEPIQGEAG 54
+ + N D+ L+ + NI A + AG
Sbjct: 137 HVELNGCKAINIVTEKAFDSETYDDWKGDFDIKKLKENIAQHGADNIVAIVSTVTCNSAG 196
Query: 55 AVVPDDGYLKKVRALCSQYNVLFIADEVQT------GLGRTGKLLAIHYEDVRPDIVILG 108
LK+V + Q+ + + D + R K ++V D+
Sbjct: 197 GQPVSMSNLKEVYEIAKQHGIFVVMDSARFCENAYFIKARDPKYKNATIKEVIFDMYKYA 256
Query: 109 KALS-----GGLYPISAVLAD-------DEVMGTLVPGTHGSTYGGNPLACKLAMTALD- 155
AL+ L I ++A VP TYGG AM
Sbjct: 257 DALTMSAKKDPLLNIGGLVAIRDNEEIFTLARQRCVPMEGFVTYGGLAGRDMAAMVQGLE 316
Query: 156 VILEENMIENAYKMGEIFRSELSSP---------ANKSKASFKLSSGGLKKSINTLILSV 206
EE + + L + K + +
Sbjct: 317 EGTEEEYLHYRIGQVKYLGDRLREAGIPIQYPTGGHAVFVDCKKLVPQIPGDQFPAQAVI 376
Query: 207 SAILEVY-----DVCIKMKDAGLVT---KPISNNIIRLS-PALNITEQELREGLDIIINT 257
+A+ ++ + T K +RL+ T + D +I
Sbjct: 377 NALYLESGVRAVEIGSFLLGRDPATGEQKHADMEFMRLTIARRVYTNDHMDYIADALIGL 436
Query: 258 INTMAAKK 265
A K
Sbjct: 437 KEKFATLK 444
>d1m6sa_ c.67.1.1 (A:) Low-specificity threonine aldolase
{Thermotoga maritima [TaxId: 2336]}
Length = 343
Score = 53.2 bits (126), Expect = 8e-09
Identities = 27/240 (11%), Positives = 73/240 (30%), Gaps = 9/240 (3%)
Query: 16 HMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNV 75
+ P + A+ + P +E +G V +K++ + ++ +
Sbjct: 104 PGKNGAMDPDDVRKAIRPRNIHFPRTSLIAIENTHNRSGGRVVPLENIKEICTIAKEHGI 163
Query: 76 LFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGT 135
D + + + D V+ + S V+ D + +
Sbjct: 164 NVHIDGARIFNASIASGVPVKEYAGYADSVMFCLSKGLCAPVGSVVVGDRDFIERARKAR 223
Query: 136 HGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSSPANKSKASFKLSSGGL 195
G A + + + ++ ++ S
Sbjct: 224 KMLGGGMRQAGVLAAAGIIALTKMVDRLKEDHENARFL--------ALKLKEIGYSVNPE 275
Query: 196 KKSINTLILSVSAI-LEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDII 254
N +IL + + + ++++G++ +S+ IRL +++ ++ E L+I
Sbjct: 276 DVKTNMVILRTDNLKVNAHGFIEALRNSGVLANAVSDTEIRLVTHKDVSRNDIEEALNIF 335
>d1v72a1 c.67.1.1 (A:6-350) Phenylserine aldolase PSALD {Pseudomonas
putida [TaxId: 303]}
Length = 345
Score = 41.4 bits (95), Expect = 6e-05
Identities = 26/244 (10%), Positives = 67/244 (27%), Gaps = 11/244 (4%)
Query: 13 FGPHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQ 72
P + + K+ V Q + ++ + +C
Sbjct: 107 MTVDGPAAKLDIVRLRERTREKVGDVHTTQPACVSITQATEVGSIYTLDEIEAIGDVCKS 166
Query: 73 YNVLFIADEVQTG--LGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGT 130
++ D + L G A D + G +G L + VL + +
Sbjct: 167 SSLGLHMDGSRFANALVSLGCSPAEMTWKAGVDALSFGATKNGVLAAEAIVLFNTSLATE 226
Query: 131 LVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSSPANKSKASFKL 190
+ + + + + ++A + + ++ + + ++
Sbjct: 227 MSYRRKRAGHLSSKMR---FLSAQIDAYLTDDLWLRNARKANAAAQRLAQGLEGLGGVEV 283
Query: 191 SSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREG 250
G IL + D +K G N++R + T +++
Sbjct: 284 LGGT-----EANILFCRLDSAMIDALLK-AGFGFYHDRWGPNVVRFVTSFATTAEDVDHL 337
Query: 251 LDII 254
L+ +
Sbjct: 338 LNQV 341
>d1b5pa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermus
thermophilus [TaxId: 274]}
Length = 382
Score = 34.4 bits (78), Expect = 0.010
Identities = 41/248 (16%), Positives = 82/248 (33%), Gaps = 20/248 (8%)
Query: 15 PHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYN 74
+P +P D + + + P A +V GAV P + L+ + L +++
Sbjct: 143 ETLPEEGFVP--DPERVRRAI--TPRTKALVVNSPNNPTGAVYPKE-VLEALARLAVEHD 197
Query: 75 VLFIADEVQTGLGRTGKLLAIHYEDVRPDIVI--LGKALSGGLYPISAVLADDEVMGTLV 132
++DE+ L G+ + + + KA + + I EV+ +
Sbjct: 198 FYLVSDEIYEHLLYEGEHFSPGRVAPEHTLTVNGAAKAFAMTGWRIGYACGPKEVIKAMA 257
Query: 133 P-GTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSSPANKSKASFKLS 191
+T + +E A + R L
Sbjct: 258 SVSRQSTTSPDTIAQWATLEALTNQEASRAFVEMAREAYRRRRDLLLEGLTALGLKAVRP 317
Query: 192 SGGLKKSINTLILSVSAI-LEVYDVCIKMKDAGLVTKPIS----NNIIRLSPALNITEQE 246
SG +++ S I + ++ +AG+ P + +RLS A + E+
Sbjct: 318 SGA-----FYVLMDTSPIAPDEVRAAERLLEAGVAVVPGTDFAAFGHVRLSYATS--EEN 370
Query: 247 LREGLDII 254
LR+ L+
Sbjct: 371 LRKALERF 378
>d1svva_ c.67.1.1 (A:) Low-specificity threonine aldolase
{Leishmania major [TaxId: 5664]}
Length = 340
Score = 31.4 bits (69), Expect = 0.10
Identities = 22/245 (8%), Positives = 65/245 (26%), Gaps = 6/245 (2%)
Query: 10 YNEFGPHMPGYNIIPYNDVDALEAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRAL 69
++ + D+++ + +S + +V L+ + A
Sbjct: 99 GHKVVTAPCPDGKLRVADIESALHENRSEHMVIPKLVYISNTTEVGTQYTKQELEDISAS 158
Query: 70 CSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMG 129
C ++ + D + + + + D+ + + L
Sbjct: 159 CKEHGLYLFLDGARLASALSSPVNDLTLADIARLTDMFYIGATKAGGMFGEALIILNDAL 218
Query: 130 TLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELSSPANKSKASFK 189
G L +V++++N+ + L +
Sbjct: 219 KPNARHLIKQRGALMAKGWLLGIQFEVLMKDNLFFELGAHSNKMAAILKAGLEACGIRLA 278
Query: 190 LSSGGLKKSINTLILSVSAILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELRE 249
S N L + + + ++ + I+RL + E+E
Sbjct: 279 WPSAS-----NQLFPILENTM-IAELNNDFDMYTVEPLKDGTCIMRLCTSWATEEKECHR 332
Query: 250 GLDII 254
++++
Sbjct: 333 FVEVL 337
>d2hgca1 a.4.5.77 (A:5-82) Uncharacterized protein YjcQ {Bacillus
subtilis [TaxId: 1423]}
Length = 78
Score = 27.7 bits (61), Expect = 0.35
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 80 DEVQTGLGRTGKLLAIHYEDVRPDIVILGKALS 112
D+ L R G ++ +HY D RP + LG L+
Sbjct: 30 DDAVNFLKREGYIIGVHYSDDRPHLYKLGPELT 62
>d1dqna_ c.61.1.1 (A:) Guanine PRTase {Giardia lamblia [TaxId:
5741]}
Length = 230
Score = 29.1 bits (65), Expect = 0.45
Identities = 13/79 (16%), Positives = 34/79 (43%), Gaps = 3/79 (3%)
Query: 41 ICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDV 100
IC+ +P++ D + + + ++++L +E + T + + +Y+DV
Sbjct: 2 ICSVTGKPVKDVLSTFFKDRNDV--LESEVKKFHLLATFEECKALAADTARRMNEYYKDV 59
Query: 101 RPDIVILGKALSGGLYPIS 119
+ ++ L+G S
Sbjct: 60 AEPVTLVA-LLTGAYLYAS 77
>d1j7ja_ c.61.1.1 (A:) Hypoxanthine PRTase {Salmonella typhimurium
[TaxId: 90371]}
Length = 172
Score = 27.2 bits (60), Expect = 1.6
Identities = 9/45 (20%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Query: 75 VLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPIS 119
V+ E++ + G+ + Y+D ++V++G L G ++
Sbjct: 5 VMIPEAEIKARIAELGRQITERYKDSGSEMVLVGL-LRGSFMFMA 48
>d1qz9a_ c.67.1.3 (A:) Kynureninase {Pseudomonas fluorescens [TaxId:
294]}
Length = 404
Score = 27.0 bits (58), Expect = 2.4
Identities = 12/59 (20%), Positives = 23/59 (38%), Gaps = 2/59 (3%)
Query: 203 ILSVSAILEVYDVCIKMKDAGLVTKPISNNIIRLSPA-LNITEQELREGLDIIINTINT 260
+S E Y V + D G++ I+R L T E+ + + I+ ++
Sbjct: 343 HVSFE-HPEGYAVIQALIDRGVIGDYREPRIMRFGFTPLYTTFTEVWDAVQILGEILDR 400
>d1khba2 c.109.1.1 (A:10-259) Cytosolic phosphoenolpyruvate
carboxykinase (GTP-hydrolyzing) {Human (Homo sapiens)
[TaxId: 9606]}
Length = 250
Score = 27.1 bits (60), Expect = 2.4
Identities = 8/14 (57%), Positives = 9/14 (64%)
Query: 135 THGSTYGGNPLACK 148
+ GS YGGN L K
Sbjct: 221 SFGSGYGGNSLLGK 234
>d1vpta_ c.66.1.25 (A:) Polymerase regulatory subunit VP39 {Vaccinia
virus [TaxId: 10245]}
Length = 297
Score = 26.3 bits (58), Expect = 4.2
Identities = 5/22 (22%), Positives = 12/22 (54%)
Query: 59 DDGYLKKVRALCSQYNVLFIAD 80
D+ YL+ ++ ++ I+D
Sbjct: 117 DEEYLRSIKKQLHPSKIILISD 138
>d1uc2a_ d.261.1.1 (A:) Hypothetical protein PH1602 {Archaeon
Pyrococcus horikoshii [TaxId: 53953]}
Length = 480
Score = 25.8 bits (56), Expect = 6.1
Identities = 14/80 (17%), Positives = 29/80 (36%), Gaps = 5/80 (6%)
Query: 112 SGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGE 171
G +PI V A D G + PG G C + + ++ +E +
Sbjct: 67 QGYGFPIGGVAAFDVKEGVISPGGIGYDIN-----CGVRLIRTNLTEKEVRPRIKQLVDT 121
Query: 172 IFRSELSSPANKSKASFKLS 191
+F++ S ++ + +
Sbjct: 122 LFKNVPSGVGSQGRIKLHWT 141
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.316 0.135 0.382
Gapped
Lambda K H
0.267 0.0452 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 956,192
Number of extensions: 43783
Number of successful extensions: 137
Number of sequences better than 10.0: 1
Number of HSP's gapped: 123
Number of HSP's successfully gapped: 23
Length of query: 266
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 182
Effective length of database: 1,254,276
Effective search space: 228278232
Effective search space used: 228278232
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.5 bits)