BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6548
(242 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2BYJ|A Chain A, Ornithine Aminotransferase Mutant Y85i
pdb|2BYJ|B Chain B, Ornithine Aminotransferase Mutant Y85i
pdb|2BYJ|C Chain C, Ornithine Aminotransferase Mutant Y85i
Length = 439
Score = 275 bits (703), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 133/218 (61%), Positives = 171/218 (78%), Gaps = 2/218 (0%)
Query: 18 SNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIH 77
+PN+ AFMVEPIQGEAG VVPD GYL VR LC+++ VLFIADE+QTGL RTG+ LA+
Sbjct: 220 QDPNVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTGRWLAVD 279
Query: 78 YEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDV 137
YE+VRPDIV+LGKALSGGLYP+SAVL DD++M T+ PG HGSTYGGNPL C++A+ AL+V
Sbjct: 280 YENVRPDIVLLGKALSGGLYPVSAVLCDDDIMLTIKPGEHGSTYGGNPLGCRVAIAALEV 339
Query: 138 ILEENMIENAYKMGEIFRSELRSRLSPDIVPVVRGKGLLNAIVLDKSI-LEVYDVCIKMK 196
+ EEN+ ENA K+G I R+EL +L D+V VRGKGLLNAIV+ ++ + + VC++++
Sbjct: 340 LEEENLAENADKLGIILRNELM-KLPSDVVTAVRGKGLLNAIVIKETKDWDAWKVCLRLR 398
Query: 197 DAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTI 234
D GL+ KP +IIR +P L I E ELRE ++II TI
Sbjct: 399 DNGLLAKPTHGDIIRFAPPLVIKEDELRESIEIINKTI 436
>pdb|1OAT|A Chain A, Ornithine Aminotransferase
pdb|1OAT|B Chain B, Ornithine Aminotransferase
pdb|1OAT|C Chain C, Ornithine Aminotransferase
pdb|2OAT|A Chain A, Ornithine Aminotransferase Complexed With
5-Fluoromethylornithine
pdb|2OAT|B Chain B, Ornithine Aminotransferase Complexed With
5-Fluoromethylornithine
pdb|2OAT|C Chain C, Ornithine Aminotransferase Complexed With
5-Fluoromethylornithine
Length = 439
Score = 275 bits (703), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 133/218 (61%), Positives = 171/218 (78%), Gaps = 2/218 (0%)
Query: 18 SNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIH 77
+PN+ AFMVEPIQGEAG VVPD GYL VR LC+++ VLFIADE+QTGL RTG+ LA+
Sbjct: 220 QDPNVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTGRWLAVD 279
Query: 78 YEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDV 137
YE+VRPDIV+LGKALSGGLYP+SAVL DD++M T+ PG HGSTYGGNPL C++A+ AL+V
Sbjct: 280 YENVRPDIVLLGKALSGGLYPVSAVLCDDDIMLTIKPGEHGSTYGGNPLGCRVAIAALEV 339
Query: 138 ILEENMIENAYKMGEIFRSELRSRLSPDIVPVVRGKGLLNAIVLDKSI-LEVYDVCIKMK 196
+ EEN+ ENA K+G I R+EL +L D+V VRGKGLLNAIV+ ++ + + VC++++
Sbjct: 340 LEEENLAENADKLGIILRNELM-KLPSDVVTAVRGKGLLNAIVIKETKDWDAWKVCLRLR 398
Query: 197 DAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTI 234
D GL+ KP +IIR +P L I E ELRE ++II TI
Sbjct: 399 DNGLLAKPTHGDIIRFAPPLVIKEDELRESIEIINKTI 436
>pdb|2CAN|A Chain A, Human Ornithine Aminotransferase Complexed With L-Canaline
pdb|2CAN|B Chain B, Human Ornithine Aminotransferase Complexed With L-Canaline
pdb|2CAN|C Chain C, Human Ornithine Aminotransferase Complexed With L-Canaline
pdb|1GBN|A Chain A, Human Ornithine Aminotransferase Complexed With The
Neurotoxin Gabaculine
pdb|1GBN|B Chain B, Human Ornithine Aminotransferase Complexed With The
Neurotoxin Gabaculine
pdb|1GBN|C Chain C, Human Ornithine Aminotransferase Complexed With The
Neurotoxin Gabaculine
Length = 402
Score = 273 bits (699), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 133/218 (61%), Positives = 171/218 (78%), Gaps = 2/218 (0%)
Query: 18 SNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIH 77
+PN+ AFMVEPIQGEAG VVPD GYL VR LC+++ VLFIADE+QTGL RTG+ LA+
Sbjct: 183 QDPNVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTGRWLAVD 242
Query: 78 YEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDV 137
YE+VRPDIV+LGKALSGGLYP+SAVL DD++M T+ PG HGSTYGGNPL C++A+ AL+V
Sbjct: 243 YENVRPDIVLLGKALSGGLYPVSAVLCDDDIMLTIKPGEHGSTYGGNPLGCRVAIAALEV 302
Query: 138 ILEENMIENAYKMGEIFRSELRSRLSPDIVPVVRGKGLLNAIVLDKSI-LEVYDVCIKMK 196
+ EEN+ ENA K+G I R+EL +L D+V VRGKGLLNAIV+ ++ + + VC++++
Sbjct: 303 LEEENLAENADKLGIILRNEL-MKLPSDVVTAVRGKGLLNAIVIKETKDWDAWKVCLRLR 361
Query: 197 DAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTI 234
D GL+ KP +IIR +P L I E ELRE ++II TI
Sbjct: 362 DNGLLAKPTHGDIIRFAPPLVIKEDELRESIEIINKTI 399
>pdb|2BYL|A Chain A, Structure Of Ornithine Aminotransferase Triple Mutant Y85i
Y55a G320f
pdb|2BYL|B Chain B, Structure Of Ornithine Aminotransferase Triple Mutant Y85i
Y55a G320f
pdb|2BYL|C Chain C, Structure Of Ornithine Aminotransferase Triple Mutant Y85i
Y55a G320f
Length = 439
Score = 272 bits (695), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 132/218 (60%), Positives = 170/218 (77%), Gaps = 2/218 (0%)
Query: 18 SNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIH 77
+PN+ AFMVEPIQGEAG VVPD GYL VR LC+++ VLFIADE+QTGL RTG+ LA+
Sbjct: 220 QDPNVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTGRWLAVD 279
Query: 78 YEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDV 137
YE+VRPDIV+LGKALSGGLYP+SAVL DD++M T+ PG H STYGGNPL C++A+ AL+V
Sbjct: 280 YENVRPDIVLLGKALSGGLYPVSAVLCDDDIMLTIKPGEHFSTYGGNPLGCRVAIAALEV 339
Query: 138 ILEENMIENAYKMGEIFRSELRSRLSPDIVPVVRGKGLLNAIVLDKSI-LEVYDVCIKMK 196
+ EEN+ ENA K+G I R+EL +L D+V VRGKGLLNAIV+ ++ + + VC++++
Sbjct: 340 LEEENLAENADKLGIILRNELM-KLPSDVVTAVRGKGLLNAIVIKETKDWDAWKVCLRLR 398
Query: 197 DAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTI 234
D GL+ KP +IIR +P L I E ELRE ++II TI
Sbjct: 399 DNGLLAKPTHGDIIRFAPPLVIKEDELRESIEIINKTI 436
>pdb|3LG0|A Chain A, Structure Of Plasmodium Falciparum Ornithine
Delta-Aminotransferase
pdb|3LG0|B Chain B, Structure Of Plasmodium Falciparum Ornithine
Delta-Aminotransferase
pdb|3LG0|C Chain C, Structure Of Plasmodium Falciparum Ornithine
Delta-Aminotransferase
pdb|3LG0|D Chain D, Structure Of Plasmodium Falciparum Ornithine
Delta-Aminotransferase
pdb|3NTJ|A Chain A, Redox Regulation Of Plasmodium Falciparum Ornithine Delta-
Aminotransferase
pdb|3NTJ|B Chain B, Redox Regulation Of Plasmodium Falciparum Ornithine Delta-
Aminotransferase
pdb|3NTJ|C Chain C, Redox Regulation Of Plasmodium Falciparum Ornithine Delta-
Aminotransferase
pdb|3NTJ|D Chain D, Redox Regulation Of Plasmodium Falciparum Ornithine Delta-
Aminotransferase
Length = 422
Score = 251 bits (642), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 120/233 (51%), Positives = 165/233 (70%), Gaps = 1/233 (0%)
Query: 3 LQFPVKSKQVPAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADE 62
L+ P + K +PN+CAF+VEP+QGEAG +VP D Y V +LC +YNVLF+ADE
Sbjct: 175 LKVPYDDLEALEKELQDPNVCAFIVEPVQGEAGVIVPSDSYFPGVASLCKKYNVLFVADE 234
Query: 63 VQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYG 122
VQTGLGRTGKLL H+ V+PD+++LGKALSGG YPISA+LA+D+VM L PG HGSTYG
Sbjct: 235 VQTGLGRTGKLLCTHHYGVKPDVILLGKALSGGHYPISAILANDDVMLVLKPGEHGSTYG 294
Query: 123 GNPLACKLAMTALDVILEENMIENAYKMGEIFRSELRSRL-SPDIVPVVRGKGLLNAIVL 181
GNPLA + + AL V++ E + ENA K+G F L+ +L +V VRGKGLL AI
Sbjct: 295 GNPLAAAICVEALKVLINEKLCENADKLGAPFLQNLKEQLKDSKVVREVRGKGLLCAIEF 354
Query: 182 DKSILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTI 234
++ V+D+C+K K+ GL+T+ + + +RL+P L IT+++L E +II+ T+
Sbjct: 355 KNDLVNVWDICLKFKENGLITRSVHDKTVRLTPPLCITKEQLDECTEIIVKTV 407
>pdb|1Z7D|A Chain A, Ornithine Aminotransferase Py00104 From Plasmodium Yoelii
pdb|1Z7D|B Chain B, Ornithine Aminotransferase Py00104 From Plasmodium Yoelii
pdb|1Z7D|C Chain C, Ornithine Aminotransferase Py00104 From Plasmodium Yoelii
pdb|1Z7D|D Chain D, Ornithine Aminotransferase Py00104 From Plasmodium Yoelii
pdb|1Z7D|E Chain E, Ornithine Aminotransferase Py00104 From Plasmodium Yoelii
pdb|1Z7D|F Chain F, Ornithine Aminotransferase Py00104 From Plasmodium Yoelii
Length = 433
Score = 251 bits (640), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 119/217 (54%), Positives = 163/217 (75%), Gaps = 1/217 (0%)
Query: 19 NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHY 78
+PN+CAF+VEPIQGEAG +VP D YL+ V +C +YNVLF+ADEVQTGLGRTGKLL +H+
Sbjct: 210 DPNVCAFIVEPIQGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQTGLGRTGKLLCVHH 269
Query: 79 EDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVI 138
+V+PD+++LGKALSGG YPISAVLA+D++M + PG HGSTYGGNPLA + + AL+V+
Sbjct: 270 YNVKPDVILLGKALSGGHYPISAVLANDDIMLVIKPGEHGSTYGGNPLAASICVEALNVL 329
Query: 139 LEENMIENAYKMGEIFRSELRSRL-SPDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKD 197
+ E + ENA K+G F L+ L IV VRGKGLL AI ++ V D+C+K+K+
Sbjct: 330 INEKLCENAEKLGGPFLENLKRELKDSKIVRDVRGKGLLCAIEFKNELVNVLDICLKLKE 389
Query: 198 AGLVTKPISNNIIRLSPALNITEQELREGLDIIINTI 234
GL+T+ + + IRL+P L IT+++L E +II+ T+
Sbjct: 390 NGLITRDVHDKTIRLTPPLCITKEQLDECTEIIVKTV 426
>pdb|3RUY|A Chain A, Crystal Structure Of The Ornithine-Oxo Acid Transaminase
Rocd From Bacillus Anthracis
pdb|3RUY|B Chain B, Crystal Structure Of The Ornithine-Oxo Acid Transaminase
Rocd From Bacillus Anthracis
Length = 392
Score = 195 bits (495), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 95/211 (45%), Positives = 142/211 (67%), Gaps = 4/211 (1%)
Query: 20 PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYE 79
PN AF++EPIQGEAG +P G+LK+ +C + NVLF+ADE+QTGLGRTGK+ A ++
Sbjct: 181 PNTAAFILEPIQGEAGINIPPAGFLKEALEVCKKENVLFVADEIQTGLGRTGKVFACDWD 240
Query: 80 DVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVIL 139
+V PD+ ILG AL GG++PIS A+ +++G PG+HGST+GGNPLAC +++ AL+V+
Sbjct: 241 NVTPDMYILGXALGGGVFPISCAAANRDILGVFEPGSHGSTFGGNPLACAVSIAALEVLE 300
Query: 140 EENMIENAYKMGEIFRSELRSRLSPDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDAG 199
EE + E + ++GE +L+ +P ++ VRGKGL I L++ C ++K AG
Sbjct: 301 EEKLTERSLQLGEKLVGQLKEIDNP-MITEVRGKGLFIGIELNEP---ARPYCEQLKAAG 356
Query: 200 LVTKPISNNIIRLSPALNITEQELREGLDII 230
L+ K N+IR++P L I+E++L I
Sbjct: 357 LLCKETHENVIRIAPPLVISEEDLEWAFQKI 387
>pdb|4ADB|A Chain A, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADB|B Chain B, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADB|C Chain C, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADB|D Chain D, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADC|A Chain A, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADC|B Chain B, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADC|C Chain C, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADC|D Chain D, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADD|A Chain A, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADD|B Chain B, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADD|C Chain C, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADD|D Chain D, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADE|A Chain A, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADE|B Chain B, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
Length = 406
Score = 149 bits (377), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 82/210 (39%), Positives = 123/210 (58%), Gaps = 3/210 (1%)
Query: 21 NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYED 80
+ CA +VEPIQGE G V + +L+ +R LC+++N L I DEVQTG+GRTG+L A +
Sbjct: 183 STCAVIVEPIQGEGGVVPASNAFLQGLRELCNRHNALLIFDEVQTGVGRTGELYAYMHYG 242
Query: 81 VRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILE 140
V PD++ KAL GG +P+ A+LA +E + GTHG+TYGGNPLA +A L++I
Sbjct: 243 VTPDLLTTAKALGGG-FPVGALLATEECARVMTVGTHGTTYGGNPLASAVAGKVLELINT 301
Query: 141 ENMIENAYKMGEIFRSELRS-RLSPDIVPVVRGKGLLNAIVLDKSIL-EVYDVCIKMKDA 198
M+ + + F L + + VRG GLL VL+ + + + A
Sbjct: 302 PEMLNGVKQRHDWFVERLNTINHRYGLFSEVRGLGLLIGCVLNADYAGQAKQISQEAAKA 361
Query: 199 GLVTKPISNNIIRLSPALNITEQELREGLD 228
G++ N++R +PALN++E+E+ GLD
Sbjct: 362 GVMVLIAGGNVVRFAPALNVSEEEVTTGLD 391
>pdb|2PB0|A Chain A, Structure Of Biosynthetic N-Acetylornithine
Aminotransferase From Salmonella Typhimurium: Studies On
Substrate Specificity And Inhibitor Binding
pdb|2PB0|B Chain B, Structure Of Biosynthetic N-Acetylornithine
Aminotransferase From Salmonella Typhimurium: Studies On
Substrate Specificity And Inhibitor Binding
pdb|2PB2|A Chain A, Structure Of Biosynthetic N-Acetylornithine
Aminotransferase From Salmonella Typhimurium: Studies On
Substrate Specificity And Inhibitor Binding
pdb|2PB2|B Chain B, Structure Of Biosynthetic N-Acetylornithine
Aminotransferase From Salmonella Typhimurium: Studies On
Substrate Specificity And Inhibitor Binding
Length = 420
Score = 141 bits (355), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 79/223 (35%), Positives = 120/223 (53%), Gaps = 3/223 (1%)
Query: 19 NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHY 78
+ + CA +VEPIQGE G +LK +R LC ++ L + DEVQ G+GRTG L A +
Sbjct: 199 DDHTCAVVVEPIQGEGGVQAATPEFLKGLRDLCDEHQALLVFDEVQCGMGRTGDLFAYMH 258
Query: 79 EDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVI 138
V PDI+ KAL GG +P+SA+L E+ G+HGSTYGGNPLAC +A A D+I
Sbjct: 259 YGVTPDILTSAKALGGG-FPVSAMLTTQEIASAFHVGSHGSTYGGNPLACAVAGAAFDII 317
Query: 139 LEENMIENAYKMGEIFRSELRS-RLSPDIVPVVRGKGLL-NAIVLDKSILEVYDVCIKMK 196
+++ + + F L++ DI +RG GLL A + K D
Sbjct: 318 NTPEVLQGIHTKRQQFVQHLQAIDEQFDIFSDIRGMGLLIGAELKPKYKGRARDFLYAGA 377
Query: 197 DAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINTMAA 239
+AG++ +++R +P+L + E ++ EG+ + + A
Sbjct: 378 EAGVMVLNAGADVMRFAPSLVVEEADIHEGMQRFAQAVGKVVA 420
>pdb|2E54|A Chain A, Crystal Structure Of Acetylornithine Aminotransferase From
Thermotoga Maritima
Length = 385
Score = 140 bits (352), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 82/223 (36%), Positives = 123/223 (55%), Gaps = 12/223 (5%)
Query: 15 KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLL 74
+ K + ++CA +EPIQGE+G V +L++ R LC +Y+ L + DEVQ G+GRTGKL
Sbjct: 165 RRKMSEDVCAVFLEPIQGESGIVPATKEFLEEARKLCDEYDALLVFDEVQCGMGRTGKLF 224
Query: 75 AIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTA 134
A V PD++ K L GG+ PI AV+ +E L PG HG+T+GGNPLAC+ +T
Sbjct: 225 AYQKYGVVPDVLTTAKGLGGGV-PIGAVIV-NERANVLEPGDHGTTFGGNPLACRAGVTV 282
Query: 135 LDVILEENMIENAYKMGEIFRSELRS-RLSPDIVPVVRGKGLLNAIVLDKSI--LEVYDV 191
+ + +E +E + G +L+ + D+V VRG GL+ I + + EV
Sbjct: 283 IKELTKEGFLEEVEEKGNYLMKKLQEMKEEYDVVADVRGMGLMIGIQFREEVSNREVATK 342
Query: 192 CIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTI 234
C + K L+ P NN IR P L + E +D+ + T+
Sbjct: 343 CFENK---LLVVPAGNNTIRFLPPLTVEYGE----IDLAVETL 378
>pdb|3OKS|A Chain A, Crystal Structure Of 4-Aminobutyrate Transaminase From
Mycobacterium Smegmatis
pdb|3OKS|B Chain B, Crystal Structure Of 4-Aminobutyrate Transaminase From
Mycobacterium Smegmatis
pdb|3OKS|C Chain C, Crystal Structure Of 4-Aminobutyrate Transaminase From
Mycobacterium Smegmatis
pdb|3OKS|D Chain D, Crystal Structure Of 4-Aminobutyrate Transaminase From
Mycobacterium Smegmatis
Length = 451
Score = 139 bits (350), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 79/219 (36%), Positives = 124/219 (56%), Gaps = 10/219 (4%)
Query: 21 NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYED 80
N+ A ++EPIQGE G +VP DG+L + C + +V+FIADEVQTG RTG + A +E
Sbjct: 227 NLAAVVIEPIQGEGGFIVPADGFLPTLLDWCRKNDVVFIADEVQTGFARTGAMFACEHEG 286
Query: 81 VRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILE 140
+ PD+++ ++GGL P+SAV E+M + G TYGGNP+AC A+ ++ I
Sbjct: 287 IDPDLIVTAXGIAGGL-PLSAVTGRAEIMDSPHVSGLGGTYGGNPIACAAALATIETIES 345
Query: 141 ENMIENAYKMGEIFRSEL-RSRLSPDIVPVVRGKGLLNAIVLDKSILEVYD------VCI 193
E ++ A ++ +I + L R + D + VRG+G + A+ L K+ D +C
Sbjct: 346 EGLVARAQQIEKIMKDRLGRLQAEDDRIGDVRGRGAMIAMELVKAGTTEPDADLTKALCA 405
Query: 194 KMKDAGLVTKPIS--NNIIRLSPALNITEQELREGLDII 230
AG++ N++R P L+I + L EGLD++
Sbjct: 406 GAHAAGVIVLSCGTYGNVVRFLPPLSIGDDLLNEGLDVL 444
>pdb|2ORD|A Chain A, Crystal Structure Of Acetylornithine Aminotransferase (Ec
2.6.1.11) (Acoat) (Tm1785) From Thermotoga Maritima At
1.40 A Resolution
pdb|2ORD|B Chain B, Crystal Structure Of Acetylornithine Aminotransferase (Ec
2.6.1.11) (Acoat) (Tm1785) From Thermotoga Maritima At
1.40 A Resolution
Length = 397
Score = 139 bits (350), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 82/223 (36%), Positives = 121/223 (54%), Gaps = 12/223 (5%)
Query: 15 KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLL 74
+ K + ++CA +EPIQGE+G V +L++ R LC +Y+ L + DEVQ G GRTGKL
Sbjct: 177 RRKXSEDVCAVFLEPIQGESGIVPATKEFLEEARKLCDEYDALLVFDEVQCGXGRTGKLF 236
Query: 75 AIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTA 134
A V PD++ K L GG+ PI AV+ +E L PG HG+T+GGNPLAC+ +T
Sbjct: 237 AYQKYGVVPDVLTTAKGLGGGV-PIGAVIV-NERANVLEPGDHGTTFGGNPLACRAGVTV 294
Query: 135 LDVILEENMIENAYKMGEIFRSELRS-RLSPDIVPVVRGKGLLNAIVLDKSI--LEVYDV 191
+ + +E +E + G +L+ + D+V VRG GL I + + EV
Sbjct: 295 IKELTKEGFLEEVEEKGNYLXKKLQEXKEEYDVVADVRGXGLXIGIQFREEVSNREVATK 354
Query: 192 CIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTI 234
C + K L+ P NN IR P L + E +D+ + T+
Sbjct: 355 CFENK---LLVVPAGNNTIRFLPPLTVEYGE----IDLAVETL 390
>pdb|3R4T|A Chain A, Crystal Structure Of 4-Aminobutyrate Aminotransferase Gabt
From Mycobacterium Marinum Covalently Bound To Pyridoxal
Phosphate
Length = 467
Score = 139 bits (349), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 81/219 (36%), Positives = 126/219 (57%), Gaps = 10/219 (4%)
Query: 21 NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYED 80
N+ A ++EPI GE G +VP DG+L ++ C +V+FIADEVQTG RTG + A +E+
Sbjct: 244 NLAAVIIEPIAGEGGFIVPADGFLPALQRWCRDNDVVFIADEVQTGFARTGAMFACDHEN 303
Query: 81 VRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILE 140
V PD+++ ++ G +P+SAV E+M G T+GGNP+AC A+ ++ I
Sbjct: 304 VEPDLIVTAXGIADG-FPLSAVTGRAEIMDAPHTSGLGGTFGGNPVACAAALATIETIER 362
Query: 141 ENMIENAYKMGEIFRSE-LRSRLSPDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMK--- 196
+ M+E A ++ + LR + + D + VRG+G + A+ L KS D + K
Sbjct: 363 DGMVERARQIERLVMDRLLRLQAADDRLGDVRGRGAMIAMELVKSGTAEPDAALTQKLAA 422
Query: 197 ---DAGLV--TKPISNNIIRLSPALNITEQELREGLDII 230
AG++ T + N+IRL P L I+++ L EGLDI+
Sbjct: 423 AAHAAGVIVLTCGMFGNVIRLLPPLTISDELLSEGLDIL 461
>pdb|2EO5|A Chain A, Crystal Structure Of 4-Aminobutyrate Aminotransferase From
Sulfolobus Tokodaii Strain7
Length = 419
Score = 133 bits (335), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 80/217 (36%), Positives = 125/217 (57%), Gaps = 12/217 (5%)
Query: 22 ICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDV 81
+ EPIQGE G V+P + +++ L +Y +L + DEVQ GLGRTGKL AI +
Sbjct: 213 VAGIFFEPIQGEGGYVIPPKNFFAELQKLAKKYGILLVDDEVQMGLGRTGKLFAIENFNT 272
Query: 82 RPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEE 141
PD++ L KAL GG+ PI A + ++ PG H +T+GGN LAC + +D++ +
Sbjct: 273 VPDVITLAKALGGGIMPIGATIFRKDL--DFKPGMHSNTFGGNALACAIGSKVIDIV--K 328
Query: 142 NMIENAYKMGEIFRSELRSRLSPDIVPVVRGKGLLNAIVLDKSILEVYDVCI-KMKDAGL 200
+++ + ++G+IF EL+ L+ D VRG GL A L+ + +V D I + GL
Sbjct: 329 DLLPHVNEIGKIFAEELQG-LADD----VRGIGL--AWGLEYNEKKVRDRIIGESFKRGL 381
Query: 201 VTKPISNNIIRLSPALNITEQELREGLDIIINTINTM 237
+ P + IR+ P L I+E+E ++GLDI+ I +
Sbjct: 382 LLLPAGRSAIRVIPPLVISEEEAKQGLDILKKVIKVV 418
>pdb|2EH6|A Chain A, Crystal Structure Of Acetylornithine Aminotransferase From
Aquifex Aeolicus Vf5
pdb|2EH6|B Chain B, Crystal Structure Of Acetylornithine Aminotransferase From
Aquifex Aeolicus Vf5
Length = 375
Score = 133 bits (335), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 69/205 (33%), Positives = 121/205 (59%), Gaps = 10/205 (4%)
Query: 26 MVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDI 85
++E IQGE G + +L K++ +C + +VL I DEVQTG+GRTG+ A + +++PD+
Sbjct: 177 IIEVIQGEGGVNEASEDFLSKLQEICKEKDVLLIIDEVQTGIGRTGEFYAYQHFNLKPDV 236
Query: 86 VILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIE 145
+ L K L GG+ PI A+LA +EV + PG+HGST+GGNPLAC+ +D + E ++
Sbjct: 237 IALAKGLGGGV-PIGAILAREEVAQSFTPGSHGSTFGGNPLACRAGTVVVDEV--EKLLP 293
Query: 146 NAYKMGEIFRSELRSRLSPDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPI 205
+ ++G F+ +L+ V+G+GL+ + L++ E D +K + GL+
Sbjct: 294 HVREVGNYFKEKLKELGKGK----VKGRGLMLGLELER---ECKDYVLKALEKGLLINCT 346
Query: 206 SNNIIRLSPALNITEQELREGLDII 230
+ ++R P L I ++ + + ++
Sbjct: 347 AGKVLRFLPPLIIQKEHIDRAISVL 371
>pdb|1SF2|A Chain A, Structure Of E. Coli Gamma-Aminobutyrate Aminotransferase
pdb|1SF2|B Chain B, Structure Of E. Coli Gamma-Aminobutyrate Aminotransferase
pdb|1SF2|C Chain C, Structure Of E. Coli Gamma-Aminobutyrate Aminotransferase
pdb|1SF2|D Chain D, Structure Of E. Coli Gamma-Aminobutyrate Aminotransferase
pdb|1SFF|A Chain A, Structure Of Gamma-Aminobutyrate Aminotransferase Complex
With Aminooxyacetate
pdb|1SFF|B Chain B, Structure Of Gamma-Aminobutyrate Aminotransferase Complex
With Aminooxyacetate
pdb|1SFF|C Chain C, Structure Of Gamma-Aminobutyrate Aminotransferase Complex
With Aminooxyacetate
pdb|1SFF|D Chain D, Structure Of Gamma-Aminobutyrate Aminotransferase Complex
With Aminooxyacetate
Length = 426
Score = 131 bits (329), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 76/228 (33%), Positives = 126/228 (55%), Gaps = 17/228 (7%)
Query: 21 NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYED 80
+I A ++EP+QGE G +++++RALC ++ ++ IADEVQ+G GRTG L A+
Sbjct: 199 DIAAIVIEPVQGEGGFYASSPAFMQRLRALCDEHGIMLIADEVQSGAGRTGTLFAMEQMG 258
Query: 81 VRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILE 140
V PD+ K+++GG +P++ V EVM + PG G TY GNP+AC A+ L V +
Sbjct: 259 VAPDLTTFAKSIAGG-FPLAGVTGRAEVMDAVAPGGLGGTYAGNPIACVAALEVLKVFEQ 317
Query: 141 ENMIENAYKMGEIFRSELR--SRLSPDIVPVVRGKGLLNAIVL---------DKSILEVY 189
EN+++ A +G+ + L + P+I VRG G + AI L D +
Sbjct: 318 ENLLQKANDLGQKLKDGLLAIAEKHPEIGD-VRGLGAMIAIELFEDGDHNKPDAKL--TA 374
Query: 190 DVCIKMKDAGLVTKPIS--NNIIRLSPALNITEQELREGLDIIINTIN 235
++ + +D GL+ N++R+ L I + ++R+GL+II +
Sbjct: 375 EIVARARDKGLILLSCGPYYNVLRILVPLTIEDAQIRQGLEIISQCFD 422
>pdb|1SZS|A Chain A, The Structure Of Gamma-aminobutyrate Aminotransferase
Mutant: I50q
pdb|1SZS|B Chain B, The Structure Of Gamma-aminobutyrate Aminotransferase
Mutant: I50q
pdb|1SZS|C Chain C, The Structure Of Gamma-aminobutyrate Aminotransferase
Mutant: I50q
pdb|1SZS|D Chain D, The Structure Of Gamma-aminobutyrate Aminotransferase
Mutant: I50q
Length = 426
Score = 131 bits (329), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 76/228 (33%), Positives = 126/228 (55%), Gaps = 17/228 (7%)
Query: 21 NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYED 80
+I A ++EP+QGE G +++++RALC ++ ++ IADEVQ+G GRTG L A+
Sbjct: 199 DIAAIVIEPVQGEGGFYASSPAFMQRLRALCDEHGIMLIADEVQSGAGRTGTLFAMEQMG 258
Query: 81 VRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILE 140
V PD+ K+++GG +P++ V EVM + PG G TY GNP+AC A+ L V +
Sbjct: 259 VAPDLTTFAKSIAGG-FPLAGVTGRAEVMDAVAPGGLGGTYAGNPIACVAALEVLKVFEQ 317
Query: 141 ENMIENAYKMGEIFRSELR--SRLSPDIVPVVRGKGLLNAIVL---------DKSILEVY 189
EN+++ A +G+ + L + P+I VRG G + AI L D +
Sbjct: 318 ENLLQKANDLGQKLKDGLLAIAEKHPEIGD-VRGLGAMIAIELFEDGDHNKPDAKL--TA 374
Query: 190 DVCIKMKDAGLVTKPIS--NNIIRLSPALNITEQELREGLDIIINTIN 235
++ + +D GL+ N++R+ L I + ++R+GL+II +
Sbjct: 375 EIVARARDKGLILLSCGPYYNVLRILVPLTIEDAQIRQGLEIISQCFD 422
>pdb|1SZU|A Chain A, The Structure Of Gamma-Aminobutyrate Aminotransferase
Mutant: V241a
pdb|1SZU|B Chain B, The Structure Of Gamma-Aminobutyrate Aminotransferase
Mutant: V241a
pdb|1SZU|C Chain C, The Structure Of Gamma-Aminobutyrate Aminotransferase
Mutant: V241a
pdb|1SZU|D Chain D, The Structure Of Gamma-Aminobutyrate Aminotransferase
Mutant: V241a
Length = 426
Score = 129 bits (325), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 75/228 (32%), Positives = 125/228 (54%), Gaps = 17/228 (7%)
Query: 21 NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYED 80
+I A ++EP+QGE G +++++RALC ++ ++ IADE Q+G GRTG L A+
Sbjct: 199 DIAAIVIEPVQGEGGFYASSPAFMQRLRALCDEHGIMLIADEAQSGAGRTGTLFAMEQMG 258
Query: 81 VRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILE 140
V PD+ K+++GG +P++ V EVM + PG G TY GNP+AC A+ L V +
Sbjct: 259 VAPDLTTFAKSIAGG-FPLAGVTGRAEVMDAVAPGGLGGTYAGNPIACVAALEVLKVFEQ 317
Query: 141 ENMIENAYKMGEIFRSELR--SRLSPDIVPVVRGKGLLNAIVL---------DKSILEVY 189
EN+++ A +G+ + L + P+I VRG G + AI L D +
Sbjct: 318 ENLLQKANDLGQKLKDGLLAIAEKHPEIGD-VRGLGAMIAIELFEDGDHNKPDAKL--TA 374
Query: 190 DVCIKMKDAGLVTKPIS--NNIIRLSPALNITEQELREGLDIIINTIN 235
++ + +D GL+ N++R+ L I + ++R+GL+II +
Sbjct: 375 EIVARARDKGLILLSCGPYYNVLRILVPLTIEDAQIRQGLEIISQCFD 422
>pdb|1SZK|A Chain A, The Structure Of Gamma-Aminobutyrate Aminotransferase
Mutant: E211s
pdb|1SZK|B Chain B, The Structure Of Gamma-Aminobutyrate Aminotransferase
Mutant: E211s
pdb|1SZK|C Chain C, The Structure Of Gamma-Aminobutyrate Aminotransferase
Mutant: E211s
pdb|1SZK|D Chain D, The Structure Of Gamma-Aminobutyrate Aminotransferase
Mutant: E211s
Length = 426
Score = 129 bits (323), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 75/228 (32%), Positives = 125/228 (54%), Gaps = 17/228 (7%)
Query: 21 NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYED 80
+I A ++EP+QG G +++++RALC ++ ++ IADEVQ+G GRTG L A+
Sbjct: 199 DIAAIVIEPVQGSGGFYASSPAFMQRLRALCDEHGIMLIADEVQSGAGRTGTLFAMEQMG 258
Query: 81 VRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILE 140
V PD+ K+++GG +P++ V EVM + PG G TY GNP+AC A+ L V +
Sbjct: 259 VAPDLTTFAKSIAGG-FPLAGVTGRAEVMDAVAPGGLGGTYAGNPIACVAALEVLKVFEQ 317
Query: 141 ENMIENAYKMGEIFRSELR--SRLSPDIVPVVRGKGLLNAIVL---------DKSILEVY 189
EN+++ A +G+ + L + P+I VRG G + AI L D +
Sbjct: 318 ENLLQKANDLGQKLKDGLLAIAEKHPEIGD-VRGLGAMIAIELFEDGDHNKPDAKL--TA 374
Query: 190 DVCIKMKDAGLVTKPIS--NNIIRLSPALNITEQELREGLDIIINTIN 235
++ + +D GL+ N++R+ L I + ++R+GL+II +
Sbjct: 375 EIVARARDKGLILLSCGPYYNVLRILVPLTIEDAQIRQGLEIISQCFD 422
>pdb|3Q8N|A Chain A, Crystal Structure Of 4-Aminobutyrate Transaminase From
Mycobacterium Smegmatis
pdb|3Q8N|B Chain B, Crystal Structure Of 4-Aminobutyrate Transaminase From
Mycobacterium Smegmatis
pdb|3Q8N|C Chain C, Crystal Structure Of 4-Aminobutyrate Transaminase From
Mycobacterium Smegmatis
pdb|3Q8N|D Chain D, Crystal Structure Of 4-Aminobutyrate Transaminase From
Mycobacterium Smegmatis
Length = 453
Score = 127 bits (320), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 89/231 (38%), Positives = 128/231 (55%), Gaps = 15/231 (6%)
Query: 9 SKQVPAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLG 68
+KQV A N+ A ++EP+ GE G VVP G+L ++ C+ +F+ADEVQTG
Sbjct: 221 NKQVGAD-----NVAAVVIEPVHGEGGFVVPAPGFLGALQKWCTDNGAVFVADEVQTGFA 275
Query: 69 RTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLAC 128
RTG L A +E+V PD+++ K ++GGL P+SAV E+M G G TYGGNPLAC
Sbjct: 276 RTGALFACEHENVVPDLIVTAKGIAGGL-PLSAVTGRAEIMDGPQSGGLGGTYGGNPLAC 334
Query: 129 KLAMTALDVILEENMIENAYKMGEIFRSELRSRLSPD-IVPVVRGKGLLNAIVLDKSILE 187
A+ +D I EN++ A +GE S L + + D + VRG+G + A+ L K
Sbjct: 335 AAALAVIDTIERENLVARARAIGETMLSRLGALAAADPRIGEVRGRGAMIAVELVKPGTT 394
Query: 188 VYDVCIKMKDA------GLV--TKPISNNIIRLSPALNITEQELREGLDII 230
D + + A GLV T N++R P L++ + L EGLDI+
Sbjct: 395 EPDADLTKRVAAAAHAQGLVVLTCGTYGNVLRFLPPLSMPDHLLDEGLDIL 445
>pdb|3DOD|A Chain A, Crystal Structure Of Plp Bound 7,8-diaminopelargonic Acid
Synthase In Bacillus Subtilis
pdb|3DOD|B Chain B, Crystal Structure Of Plp Bound 7,8-diaminopelargonic Acid
Synthase In Bacillus Subtilis
pdb|3DRD|A Chain A, Crystal Structure Of 7,8 Diaminopelargonic Acid Synthase
Apoenzyme In Bacillus Subtilis
pdb|3DRD|B Chain B, Crystal Structure Of 7,8 Diaminopelargonic Acid Synthase
Apoenzyme In Bacillus Subtilis
Length = 448
Score = 121 bits (303), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 75/241 (31%), Positives = 124/241 (51%), Gaps = 19/241 (7%)
Query: 17 KSNPNICAFMVEP-IQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLA 75
+ + I A +E +QG +G +V +GYL VR LC+ Y+VL I DEV TG GRTGK+ A
Sbjct: 206 EHHEEIAALSIESMVQGASGMIVMPEGYLAGVRELCTTYDVLMIVDEVATGFGRTGKMFA 265
Query: 76 IHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGT-------HGSTYGGNPLAC 128
+E+V+PD++ GK ++GG PI+ A +++ HG +Y GN L C
Sbjct: 266 CEHENVQPDLMAAGKGITGGYLPIAVTFATEDIYKAFYDDYENLKTFFHGHSYTGNQLGC 325
Query: 129 KLAMTALDVILEENMIENAYKMGEIFRSELRSRLSPDIVPVVRGKGLL--NAIVLDKSIL 186
+A+ L + EN++E + + L+ + V +R G + +V K
Sbjct: 326 AVALENLALFESENIVEQVAEKSKKLHFLLQDLHALPHVGDIRQLGFMCGAELVRSKETK 385
Query: 187 EV--------YDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINTMA 238
E Y V +KM++ G++T+P+ ++I P L T +EL E + I+ I+ +
Sbjct: 386 EPYPADRRIGYKVSLKMRELGMLTRPL-GDVIAFLPPLASTAEELSEMVAIMKQAIHEVT 444
Query: 239 A 239
+
Sbjct: 445 S 445
>pdb|3DU4|A Chain A, Crystal Structure Of 7-Keto-8-Aminopelargonic Acid Bound
7,8- Diaminopelargonic Acid Synthase In Bacillus
Subtilis
pdb|3DU4|B Chain B, Crystal Structure Of 7-Keto-8-Aminopelargonic Acid Bound
7,8- Diaminopelargonic Acid Synthase In Bacillus
Subtilis
Length = 448
Score = 121 bits (303), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 75/241 (31%), Positives = 124/241 (51%), Gaps = 19/241 (7%)
Query: 17 KSNPNICAFMVEP-IQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLA 75
+ + I A +E +QG +G +V +GYL VR LC+ Y+VL I DEV TG GRTGK+ A
Sbjct: 206 EHHEEIAALSIESMVQGASGMIVMPEGYLAGVRELCTTYDVLMIVDEVATGFGRTGKMFA 265
Query: 76 IHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGT-------HGSTYGGNPLAC 128
+E+V+PD++ GK ++GG PI+ A +++ HG +Y GN L C
Sbjct: 266 CEHENVQPDLMAAGKGITGGYLPIAVTFATEDIYKAFYDDYENLKTFFHGHSYTGNQLGC 325
Query: 129 KLAMTALDVILEENMIENAYKMGEIFRSELRSRLSPDIVPVVRGKGLL--NAIVLDKSIL 186
+A+ L + EN++E + + L+ + V +R G + +V K
Sbjct: 326 AVALENLALFESENIVEQVAEKSKKLHFLLQDLHALPHVGDIRQLGFMCGAELVRSKETK 385
Query: 187 EV--------YDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINTMA 238
E Y V +KM++ G++T+P+ ++I P L T +EL E + I+ I+ +
Sbjct: 386 EPYPADRRIGYKVSLKMRELGMLTRPL-GDVIAFLPPLASTAEELSEMVAIMKQAIHEVT 444
Query: 239 A 239
+
Sbjct: 445 S 445
>pdb|3NX3|A Chain A, Crystal Structure Of Acetylornithine Aminotransferase
(Argd) From Campylobacter Jejuni
pdb|3NX3|B Chain B, Crystal Structure Of Acetylornithine Aminotransferase
(Argd) From Campylobacter Jejuni
Length = 395
Score = 118 bits (296), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 68/208 (32%), Positives = 103/208 (49%), Gaps = 2/208 (0%)
Query: 19 NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHY 78
N CA ++E +QGE G + + K +R LC + ++L IADE+Q G GR+GK A +
Sbjct: 177 NEKTCAIILESVQGEGGINPANKDFYKALRKLCDEKDILLIADEIQCGXGRSGKFFAYEH 236
Query: 79 EDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVI 138
+ PDI KAL GL + V+ +L G HGSTYGGNPL C ++
Sbjct: 237 AQILPDIXTSAKALGCGLSVGAFVINQKVASNSLEAGDHGSTYGGNPLVCAGVNAVFEIF 296
Query: 139 LEENMIENAYKMGEIFRSELRSRLSP-DIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKD 197
EE ++EN K+ L ++ D +G G + LDKS+ +V V K ++
Sbjct: 297 KEEKILENVNKLTPYLEQSLDELINEFDFCKKRKGLGFXQGLSLDKSV-KVAKVIQKCQE 355
Query: 198 AGLVTKPISNNIIRLSPALNITEQELRE 225
L+ N +R P L + ++ + E
Sbjct: 356 NALLLISCGENDLRFLPPLILQKEHIDE 383
>pdb|3N5M|A Chain A, Crystals Structure Of A Bacillus Anthracis
Aminotransferase
pdb|3N5M|B Chain B, Crystals Structure Of A Bacillus Anthracis
Aminotransferase
pdb|3N5M|C Chain C, Crystals Structure Of A Bacillus Anthracis
Aminotransferase
pdb|3N5M|D Chain D, Crystals Structure Of A Bacillus Anthracis
Aminotransferase
Length = 452
Score = 114 bits (284), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 80/240 (33%), Positives = 115/240 (47%), Gaps = 25/240 (10%)
Query: 22 ICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDV 81
I AF+ EPI G + Y K V C ++ L I+DEV G GRTGK DV
Sbjct: 216 IAAFIXEPIITGGGILXAPQDYXKAVHETCQKHGALLISDEVICGFGRTGKAFGFXNYDV 275
Query: 82 RPDIVILGKALSGGLYPISAVLADDEVM------GTLVPGTHGSTYGGNPLACKLAMTAL 135
+PDI+ K ++ P+SA E+ G H +T+GGNP AC LA+ L
Sbjct: 276 KPDIITXAKGITSAYLPLSATAVKREIYEAFKGKGEYEFFRHINTFGGNPAACALALKNL 335
Query: 136 DVILEENMIENAYKMGEIFRSELRSRLSPD-IVPVVRGKGLLNAIVL--DKSILEVYD-- 190
++I EN+IE + + G + +L+ + +V +RGKGLL I L DK E D
Sbjct: 336 EIIENENLIERSAQXGSLLLEQLKEEIGEHPLVGDIRGKGLLVGIELVNDKETKEPIDND 395
Query: 191 ----VCIKMKDAGLV------TKPISNNIIRLSPALNITEQELREGLDIIINTINTMAAK 240
V K+ GL+ T NNI+ L+P L I+ +E+ +I T+ T +
Sbjct: 396 KIASVVNACKEKGLIIGRNGXTTAGYNNILTLAPPLVISSEEIA----FVIGTLKTAXER 451
>pdb|4FFC|A Chain A, Crystal Structure Of A 4-Aminobutyrate Aminotransferase
(Gabt) From Mycobacterium Abscessus
pdb|4FFC|B Chain B, Crystal Structure Of A 4-Aminobutyrate Aminotransferase
(Gabt) From Mycobacterium Abscessus
pdb|4FFC|C Chain C, Crystal Structure Of A 4-Aminobutyrate Aminotransferase
(Gabt) From Mycobacterium Abscessus
pdb|4FFC|D Chain D, Crystal Structure Of A 4-Aminobutyrate Aminotransferase
(Gabt) From Mycobacterium Abscessus
Length = 453
Score = 112 bits (281), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 84/234 (35%), Positives = 126/234 (53%), Gaps = 18/234 (7%)
Query: 21 NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYED 80
++ A ++EPIQGE G +VP G+L + A S+ V+FIADEVQTG RTG A +E
Sbjct: 225 SLAAIIIEPIQGEGGFIVPAPGFLATLTAWASENGVVFIADEVQTGFARTGAWFASEHEG 284
Query: 81 VRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILE 140
+ PDIV + ++GG+ P+SAV E+M + G G TYGGNP+ C A+ AL V+ E
Sbjct: 285 IVPDIVTMAXGIAGGM-PLSAVTGRAELMDAVYAGGLGGTYGGNPVTCAAAVAALGVMRE 343
Query: 141 ENMIENAYKMGEIFRSELRSRLSP-----DIVPVVRGKGLLNAI-VLDKSILEVYDVCIK 194
++ A + + + SRLS DI+ VRG+G + AI ++ LE K
Sbjct: 344 LDLPARARAI----EASVTSRLSALAEEVDIIGEVRGRGAMLAIEIVKPGTLEPDAALTK 399
Query: 195 MKDAGLVTKPI-------SNNIIRLSPALNITEQELREGLDIIINTINTMAAKK 241
A +++ + N+IRL P L I + L EG+ + + I A+ +
Sbjct: 400 SIAAEALSQGVLILTCGTFGNVIRLLPPLVIGDDLLDEGITALSDIIRAKASHQ 453
>pdb|1VEF|A Chain A, Acetylornithine Aminotransferase From Thermus Thermophilus
Hb8
pdb|1VEF|B Chain B, Acetylornithine Aminotransferase From Thermus Thermophilus
Hb8
pdb|1WKG|A Chain A, Acetylornithine Aminotransferase From Thermus Thermophilus
Hb8
pdb|1WKG|B Chain B, Acetylornithine Aminotransferase From Thermus Thermophilus
Hb8
pdb|1WKH|A Chain A, Acetylornithine Aminotransferase From Thermus Thermophilus
Hb8
pdb|1WKH|B Chain B, Acetylornithine Aminotransferase From Thermus Thermophilus
Hb8
Length = 395
Score = 112 bits (279), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 69/202 (34%), Positives = 109/202 (53%), Gaps = 6/202 (2%)
Query: 23 CAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVR 82
A ++EP+QGE G +L+ R + + L I DE+QTG+GRTGK A + +
Sbjct: 187 AAVILEPVQGEGGVRPATPEFLRAAREITQEKGALLILDEIQTGMGRTGKRFAFEHFGIV 246
Query: 83 PDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEEN 142
PDI+ L KAL GG+ P+ + +EV ++ G HG+T+GGNPLA + A+ +
Sbjct: 247 PDILTLAKALGGGV-PLGVAVMREEVARSMPKGGHGTTFGGNPLAMAAGVAAIRYLERTR 305
Query: 143 MIENAYKMGEIFRSELRSRLSPDIVPVVRGKGLLNAIVL-DKSILEVYDVCIKMKDAGLV 201
+ E A ++G F +LR+ SP I VRG GL+ + L +K+ + + + + L
Sbjct: 306 LWERAAELGPWFMEKLRAIPSPKIRE-VRGMGLMVGLELKEKAAPYIARLEKEHRVLALQ 364
Query: 202 TKPISNNIIRLSPALNITEQEL 223
P +IR P L I +++L
Sbjct: 365 AGP---TVIRFLPPLVIEKEDL 383
>pdb|3A8U|X Chain X, Crystal Structure Of Omega-Amino Acid:pyruvate
Aminotransferase
Length = 449
Score = 110 bits (276), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 70/236 (29%), Positives = 117/236 (49%), Gaps = 14/236 (5%)
Query: 15 KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLL 74
+L NI A VEP+ G AG +VP +GYLK+ R +C+Q+N+L + DEV TG GRTG +
Sbjct: 213 ELHDASNIAAVFVEPLAGSAGVLVPPEGYLKRNREICNQHNILLVFDEVITGFGRTGSMF 272
Query: 75 AIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTL---------VPGTHGSTYGGNP 125
V PD++ + K ++ G P+ AV+A E+ T V HG TY +P
Sbjct: 273 GADSFGVTPDLMCIAKQVTNGAIPMGAVIASTEIYQTFMNQPTPEYAVEFPHGYTYSAHP 332
Query: 126 LACKLAMTALDVILEENMIENAYKMGEIFRSELRSRLSPDIVPVVRGKGLLNAIVL---- 181
+AC + AL ++ +EN++++ ++ F L V +R GL AI +
Sbjct: 333 VACAAGLAALCLLQKENLVQSVAEVAPHFEKALHGIKGAKNVIDIRNFGLAGAIQIAPRD 392
Query: 182 DKSILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINTM 237
+I+ ++ + + AG + + ++ P N Q+L D + +N +
Sbjct: 393 GDAIVRPFEAGMALWKAGFYVR-FGGDTLQFGPTFNSKPQDLDRLFDAVGEVLNKL 447
>pdb|3GJU|A Chain A, Crystal Structure Of A Putative Aminotransferase (Mll7127)
From Mesorhizobium Loti Maff303099 At 1.55 A Resolution
Length = 459
Score = 108 bits (270), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 76/231 (32%), Positives = 116/231 (50%), Gaps = 24/231 (10%)
Query: 22 ICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDV 81
I AF+ EPI G G V P GY +K++A+ +Y+VL +ADEV TG GR G + +
Sbjct: 222 IAAFIGEPILGTGGIVPPPAGYWEKIQAVLKKYDVLLVADEVVTGFGRLGTXFGSDHYGI 281
Query: 82 RPD-IVILGKALSGGLYPISAVLADDEVMGTLVPGT-------HGSTYGGNPLACKLAMT 133
+PD I I K L+ P+S V+ D V LV G+ HG TY +P+ +
Sbjct: 282 KPDLITIAXKGLTSAYAPLSGVIVADRVWQVLVQGSDKLGSLGHGWTYSAHPICVAAGVA 341
Query: 134 ALDVILEENMIENAYKMGEIFRSELRSRLSPDI-VPVVRGKGLLNAI--VLDKSILEVYD 190
L++I E +++ NA + G FR+EL + V VRG G L A+ V DK +D
Sbjct: 342 NLELIDEXDLVTNAGETGAYFRAELAKAVGGHKNVGEVRGDGXLAAVEFVADKDDRVFFD 401
Query: 191 --------VCIKMKDAGLVTKPI-SNNIIRLSPALNITEQELREGLDIIIN 232
V + +G++ + +I+ +P L +T RE DI+++
Sbjct: 402 ASQKIGPQVATALAASGVIGRAXPQGDILGFAPPLCLT----REQADIVVS 448
>pdb|3NUI|A Chain A, Crystal Structure Of Omega-Transferase From Vibrio
Fluvialis Js17
pdb|3NUI|B Chain B, Crystal Structure Of Omega-Transferase From Vibrio
Fluvialis Js17
Length = 478
Score = 107 bits (267), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 65/237 (27%), Positives = 111/237 (46%), Gaps = 18/237 (7%)
Query: 21 NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYED 80
I F EP+ G G + P GY + + + +Y++ I+DEV G GRTG D
Sbjct: 230 TIAGFFAEPVMGAGGVIPPAKGYFQAILPILRKYDIPVISDEVICGFGRTGNTWGCVTYD 289
Query: 81 VRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGT-------HGSTYGGNPLACKLAMT 133
PD +I K L+ G +P+ AV+ E+ L HG T G+P+ C +A+
Sbjct: 290 FTPDAIISSKNLTAGFFPMGAVILGPELSKRLETAIEAIEEFPHGFTASGHPVGCAIALK 349
Query: 134 ALDVILEENMIENAYKMGEIFRSELRSRLSPDIVPVVRGKGLLNAI--VLDKSILEVYD- 190
A+DV++ E + EN ++ F L+ + RG G + A+ V DK+ +D
Sbjct: 350 AIDVVMNEGLAENVRRLAPRFEERLKHIAERPNIGEYRGIGFMWALEAVKDKASKTPFDG 409
Query: 191 -------VCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINTMAAK 240
+ D GL+ +P+ +++ L P +TE ++ E D + ++ + A+
Sbjct: 410 NLSVSERIANTCTDLGLICRPLGQSVV-LCPPFILTEAQMDEMFDKLEKALDKVFAE 465
>pdb|4E3Q|A Chain A, Pmp-Bound Form Of Aminotransferase Crystal Structure From
Vibrio Fluvialis
pdb|4E3Q|B Chain B, Pmp-Bound Form Of Aminotransferase Crystal Structure From
Vibrio Fluvialis
pdb|4E3Q|C Chain C, Pmp-Bound Form Of Aminotransferase Crystal Structure From
Vibrio Fluvialis
pdb|4E3Q|D Chain D, Pmp-Bound Form Of Aminotransferase Crystal Structure From
Vibrio Fluvialis
Length = 473
Score = 103 bits (257), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 65/237 (27%), Positives = 107/237 (45%), Gaps = 18/237 (7%)
Query: 21 NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYED 80
I F EP+ G G + P GY + + + +Y++ I+DEV G GRTG D
Sbjct: 236 TIAGFFAEPVXGAGGVIPPAKGYFQAILPILRKYDIPVISDEVICGFGRTGNTWGCVTYD 295
Query: 81 VRPDIVILGKALSGGLYPISAVLADDEVMGTLVPG-------THGSTYGGNPLACKLAMT 133
PD +I K L+ G +P AV+ E+ L HG T G+P+ C +A+
Sbjct: 296 FTPDAIISSKNLTAGFFPXGAVILGPELSKRLETAIEAIEEFPHGFTASGHPVGCAIALK 355
Query: 134 ALDVILEENMIENAYKMGEIFRSELRSRLSPDIVPVVRGKGLLNAI--VLDKSILEVYD- 190
A+DV+ E + EN ++ F L+ + RG G A+ V DK+ +D
Sbjct: 356 AIDVVXNEGLAENVRRLAPRFEERLKHIAERPNIGEYRGIGFXWALEAVKDKASKTPFDG 415
Query: 191 -------VCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINTMAAK 240
+ D GL+ +P+ +++ L P +TE + E D + ++ + A+
Sbjct: 416 NLSVSERIANTCTDLGLICRPLGQSVV-LCPPFILTEAQXDEXFDKLEKALDKVFAE 471
>pdb|4E3R|A Chain A, Plp-Bound Aminotransferase Mutant Crystal Structure From
Vibrio Fluvialis
pdb|4E3R|B Chain B, Plp-Bound Aminotransferase Mutant Crystal Structure From
Vibrio Fluvialis
pdb|4E3R|C Chain C, Plp-Bound Aminotransferase Mutant Crystal Structure From
Vibrio Fluvialis
pdb|4E3R|D Chain D, Plp-Bound Aminotransferase Mutant Crystal Structure From
Vibrio Fluvialis
Length = 473
Score = 103 bits (257), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 64/237 (27%), Positives = 109/237 (45%), Gaps = 18/237 (7%)
Query: 21 NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYED 80
I F EP+ G G + P GY + + + +Y++ I+DEV G GRTG D
Sbjct: 236 TIAGFFAEPVMGAGGVIPPAKGYFQAILPILRKYDIPVISDEVVCGFGRTGNTWGCVTYD 295
Query: 81 VRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGT-------HGSTYGGNPLACKLAMT 133
PD +I L+ G +P+ AV+ E+ L HG T G+P+ C +A+
Sbjct: 296 FTPDAIISSXNLTAGFFPMGAVILGPELSKRLETAIEAIEEFPHGFTASGHPVGCAIALK 355
Query: 134 ALDVILEENMIENAYKMGEIFRSELRSRLSPDIVPVVRGKGLLNAI--VLDKSILEVYD- 190
A+DV++ E + EN ++ F L+ + RG G + A+ V DK+ +D
Sbjct: 356 AIDVVMNEGLAENVRRLAPRFEERLKHIAERPNIGEYRGIGFMWALEAVKDKASKTPFDG 415
Query: 191 -------VCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINTMAAK 240
+ D GL+ P+ +++ L P +TE ++ E D + ++ + A+
Sbjct: 416 NLSVSERIANTCTDLGLICFPLGQSVV-LCPPFILTEAQMDEMFDKLEKALDKVFAE 471
>pdb|4ATP|A Chain A, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATP|B Chain B, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATP|C Chain C, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATP|D Chain D, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATP|E Chain E, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATP|F Chain F, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATP|G Chain G, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATP|H Chain H, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATP|I Chain I, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATP|J Chain J, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATP|K Chain K, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATP|L Chain L, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATQ|A Chain A, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
pdb|4ATQ|B Chain B, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
pdb|4ATQ|C Chain C, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
pdb|4ATQ|D Chain D, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
pdb|4ATQ|E Chain E, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
pdb|4ATQ|F Chain F, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
pdb|4ATQ|G Chain G, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
pdb|4ATQ|H Chain H, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
pdb|4ATQ|I Chain I, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
pdb|4ATQ|J Chain J, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
pdb|4ATQ|K Chain K, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
pdb|4ATQ|L Chain L, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
Length = 456
Score = 103 bits (256), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 79/233 (33%), Positives = 131/233 (56%), Gaps = 17/233 (7%)
Query: 21 NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYED 80
+ A ++EPIQGE G +VP +G+L + + ++FIADEVQ+G RTG+ A+ +E
Sbjct: 226 QVAAIIIEPIQGEGGFIVPAEGFLPALSEWAKEKGIVFIADEVQSGFCRTGEWFAVDHEG 285
Query: 81 VRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILE 140
V PDI+ + K ++GGL P+SA+ +++ + PG G TYGGNP+AC A+ A+D + +
Sbjct: 286 VVPDIITMAKGIAGGL-PLSAITGRADLLDAVHPGGLGGTYGGNPVACAAALAAIDTMEQ 344
Query: 141 ENMIENAYKMGEIFRSELR---SRLSP---DIVPVVRGKGLLNAIVLDKS---------I 185
++ A + E+ +LR + LS +V +RG+G + AI L +
Sbjct: 345 HDLNGRARHIEELALGKLRELAAELSAGGGSVVGDIRGRGAMLAIELVQPGSKEPNAELT 404
Query: 186 LEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINTMA 238
V C+K + ++T N+IRL P L I+++ L +GL+++ I A
Sbjct: 405 KAVAAACLK-EGVIILTCGTYGNVIRLLPPLVISDELLIDGLEVLAAAIKAHA 456
>pdb|3TFT|A Chain A, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
(Bioa) From Mycobacterium Tuberculosis, Pre-Reaction
Complex With A 3,6- Dihydropyrid-2-One Heterocycle
Inhibitor
pdb|3TFT|B Chain B, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
(Bioa) From Mycobacterium Tuberculosis, Pre-Reaction
Complex With A 3,6- Dihydropyrid-2-One Heterocycle
Inhibitor
pdb|3TFU|A Chain A, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
(Bioa) From Mycobacterium Tuberculosis, Post-Reaction
Complex With A 3,6- Dihydropyrid-2-One Heterocycle
Inhibitor
pdb|3TFU|B Chain B, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
(Bioa) From Mycobacterium Tuberculosis, Post-Reaction
Complex With A 3,6- Dihydropyrid-2-One Heterocycle
Inhibitor
Length = 457
Score = 102 bits (255), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 67/219 (30%), Positives = 109/219 (49%), Gaps = 14/219 (6%)
Query: 6 PVKSKQVPAKLKSNPN-ICAFMVEPI-QGEAGAVVPDDGYLKKVRALCSQYNVLFIADEV 63
P S A+L + + A +VEP+ QG G D YL +R +C +Y VL I DE+
Sbjct: 217 PAYSAAFEAQLAQHAGELAAVVVEPVVQGAGGMRFHDPRYLHDLRDICRRYEVLLIFDEI 276
Query: 64 QTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGT-----HG 118
TG GRTG L A + V PDI+ +GKAL+GG ++A L +V T+ G HG
Sbjct: 277 ATGFGRTGALFAADHAGVSPDIMCVGKALTGGYLSLAATLCTADVAHTISAGAAGALMHG 336
Query: 119 STYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELRSRLSPDIVPVVRGKGLLNA 178
T+ NPLAC +++ +++++L ++ ++ + L + + V VR G +
Sbjct: 337 PTFMANPLACAVSVASVELLLGQDWRTRITELAAGLTAGLDTARALPAVTDVRVCGAIGV 396
Query: 179 IVLDKSILEVYDVCIKMK---DAGLVTKPISNNIIRLSP 214
I D+ + D+ + D G+ +P N + + P
Sbjct: 397 IECDRPV----DLAVATPAALDRGVWLRPFRNLVYAMPP 431
>pdb|4GRX|A Chain A, Structure Of An Omega-Aminotransferase From Paracoccus
Denitrificans
pdb|4GRX|B Chain B, Structure Of An Omega-Aminotransferase From Paracoccus
Denitrificans
pdb|4GRX|C Chain C, Structure Of An Omega-Aminotransferase From Paracoccus
Denitrificans
pdb|4GRX|D Chain D, Structure Of An Omega-Aminotransferase From Paracoccus
Denitrificans
Length = 465
Score = 102 bits (255), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 62/237 (26%), Positives = 111/237 (46%), Gaps = 18/237 (7%)
Query: 21 NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYED 80
I F EP+ G G + P GY + + + +Y++ I+DEV G GRTG D
Sbjct: 228 TIAGFFAEPVMGAGGVIPPAKGYFQAILPILRKYDIPMISDEVICGFGRTGNTWGCLTYD 287
Query: 81 VRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGT-------HGSTYGGNPLACKLAMT 133
PD +I L+ G +P+ AV+ ++ + HG T G+P+ C +A+
Sbjct: 288 FMPDAIISSXNLTAGFFPMGAVILGPDLAKRVEAAVEAIEEFPHGFTASGHPVGCAIALK 347
Query: 134 ALDVILEENMIENAYKMGEIFRSELRSRLSPDIVPVVRGKGLLNAI--VLDKSILEVYDV 191
A+DV++ E + EN ++ F + L+ + RG G + A+ V DK +D
Sbjct: 348 AIDVVMNEGLAENVRRLAPRFEAGLKRIADRPNIGEYRGIGFMWALEAVKDKPTKTPFDA 407
Query: 192 CIKMK--------DAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINTMAAK 240
+ + D GL+ +P+ +I+ L P +TE ++ E + + ++ + A+
Sbjct: 408 NLSVSERIANTCTDLGLICRPLGQSIV-LCPPFILTEAQMDEMFEKLEKALDKVFAE 463
>pdb|3I4J|A Chain A, Crystal Structure Of Aminotransferase, Class Iii From
Deinococcus Radiodurans
pdb|3I4J|B Chain B, Crystal Structure Of Aminotransferase, Class Iii From
Deinococcus Radiodurans
pdb|3I4J|C Chain C, Crystal Structure Of Aminotransferase, Class Iii From
Deinococcus Radiodurans
pdb|3I4J|D Chain D, Crystal Structure Of Aminotransferase, Class Iii From
Deinococcus Radiodurans
Length = 430
Score = 102 bits (253), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 51/137 (37%), Positives = 84/137 (61%), Gaps = 6/137 (4%)
Query: 21 NICAFMVEPIQGEA-GAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAI-HY 78
+ AFM EP+ G + A+ P GY ++VR +C + ++FIADEV +G+GR G LA+ +
Sbjct: 190 TVAAFMAEPVVGASDAALAPAPGYYERVRDICDEAGIIFIADEVMSGMGRCGSPLALSRW 249
Query: 79 EDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGT----HGSTYGGNPLACKLAMTA 134
V PDI +LGK L+ G P++ +LA +V T++ G+ HG TY G+P++ ++
Sbjct: 250 SGVTPDIAVLGKGLAAGYAPLAGLLAAPQVYETVMGGSGAFMHGFTYAGHPVSVAAGLSV 309
Query: 135 LDVILEENMIENAYKMG 151
LD++ E++ A + G
Sbjct: 310 LDIVEREDLTGAAKERG 326
>pdb|3HMU|A Chain A, Crystal Structure Of A Class Iii Aminotransferase From
Silicibacter Pomeroyi
pdb|3HMU|B Chain B, Crystal Structure Of A Class Iii Aminotransferase From
Silicibacter Pomeroyi
Length = 472
Score = 100 bits (250), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 64/217 (29%), Positives = 106/217 (48%), Gaps = 13/217 (5%)
Query: 22 ICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDV 81
+ AF+ EP+QG G +V D Y +++ +C +Y++L IADEV G GRTG +
Sbjct: 224 VAAFIAEPVQGAGGVIVAPDSYWPEIQRICDKYDILLIADEVICGFGRTGNWFGTQTMGI 283
Query: 82 RPDIVILGKALSGGLYPISAVLADDEVMGTLVPG--THGSTYGGNPLACKLAMTALDVIL 139
RP I+ + K LS G PI + DEV + HG TY G+P+A +A+ L ++
Sbjct: 284 RPHIMTIAKGLSSGYAPIGGSIVCDEVAHVIGKDEFNHGYTYSGHPVAAAVALENLRILE 343
Query: 140 EENMIENAYKMGEIFRSELRSRLSPD-IVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDA 198
EEN++++ + + E L+ +V + G++ +I L + +
Sbjct: 344 EENILDHVRNVAAPYLKEKWEALTDHPLVGEAKIVGMMASIALTPNKASRAKFASEPGTI 403
Query: 199 GLVTKP--ISNNIIR--------LSPALNITEQELRE 225
G + + +NN+I +SP L IT E+ E
Sbjct: 404 GYICRERCFANNLIMRHVGDRMIISPPLVITPAEIDE 440
>pdb|1D7R|A Chain A, Crystal Structure Of The Complex Of 2,2-Dialkylglycine
Decarboxylase With 5pa
pdb|1D7S|A Chain A, Crystal Structure Of The Complex Of 2,2-Dialkylglycine
Decarboxylase With Dcs
pdb|1D7U|A Chain A, Crystal Structure Of The Complex Of 2,2-Dialkylglycine
Decarboxylase With Lcs
pdb|1D7V|A Chain A, Crystal Structure Of The Complex Of 2,2-Dialkylglycine
Decarboxylase With Nma
Length = 433
Score = 100 bits (249), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 73/237 (30%), Positives = 115/237 (48%), Gaps = 23/237 (9%)
Query: 17 KSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAI 76
+S+ N+ AF+ EPI G + DGY+ ++ C +L I DE QTG+GRTG + A
Sbjct: 199 QSSGNLAAFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRTGTMFAC 258
Query: 77 HYEDVRPDIVILGKALSGGLYPISAVLADDEV------MGTLVPGTHGSTYGGNPLACKL 130
+ V PDI+ L K L GL P++A++ + +G L TH S +PL +
Sbjct: 259 QRDGVTPDILTLSKTLGAGL-PLAAIVTSAAIEERAHELGYLFYTTHVS----DPLPAAV 313
Query: 131 AMTALDVILEENMIENAYKMGEIFRSELRSRLSP-DIVPVVRGKGLLNA--IVLDKSILE 187
+ LDV+ + ++ A MG+ R L + D + VRG+GLL IV D+ E
Sbjct: 314 GLRVLDVVQRDGLVARANVMGDRLRRGLLDLMERFDCIGDVRGRGLLLGVEIVKDRRTKE 373
Query: 188 VYD--------VCIKMK-DAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTIN 235
D C+ + +V P + R++P L ++E E+ GL ++ I
Sbjct: 374 PADGLGAKITRECMNLGLSMNIVQLPGMGGVFRIAPPLTVSEDEIDLGLSLLGQAIE 430
>pdb|1DGD|A Chain A, An Alkali Metal Ion Size-Dependent Switch In The Active
Site Structure Of Dialkylglycine Decarboxylase
pdb|1DGE|A Chain A, An Alkali Metal Ion Size-Dependent Switch In The Active
Site Structure Of Dialkylglycine Decarboxylase
Length = 432
Score = 100 bits (249), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 73/237 (30%), Positives = 115/237 (48%), Gaps = 23/237 (9%)
Query: 17 KSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAI 76
+S+ N+ AF+ EPI G + DGY+ ++ C +L I DE QTG+GRTG + A
Sbjct: 198 QSSGNLAAFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRTGTMFAC 257
Query: 77 HYEDVRPDIVILGKALSGGLYPISAVLADDEV------MGTLVPGTHGSTYGGNPLACKL 130
+ V PDI+ L K L GL P++A++ + +G L TH S +PL +
Sbjct: 258 QRDGVTPDILTLSKTLGAGL-PLAAIVTSAAIEERAHELGYLFYTTHVS----DPLPAAV 312
Query: 131 AMTALDVILEENMIENAYKMGEIFRSELRSRLSP-DIVPVVRGKGLLNA--IVLDKSILE 187
+ LDV+ + ++ A MG+ R L + D + VRG+GLL IV D+ E
Sbjct: 313 GLRVLDVVQRDGLVARANVMGDRLRRGLLDLMERFDCIGDVRGRGLLLGVEIVKDRRTKE 372
Query: 188 VYD--------VCIKMK-DAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTIN 235
D C+ + +V P + R++P L ++E E+ GL ++ I
Sbjct: 373 PADGLGAKITRECMNLGLSMNIVQLPGMGGVFRIAPPLTVSEDEIDLGLSLLGQAIE 429
>pdb|1M0N|A Chain A, Structure Of Dialkylglycine Decarboxylase Complexed With
1- Aminocyclopentanephosphonate
pdb|1M0O|A Chain A, Structure Of Dialkylglycine Decarboxylase Complexed With
1- Amino-1-Methylpropanephosphonate
pdb|1M0P|A Chain A, Structure Of Dialkylglycine Decarboxylase Complexed With
1- Amino-1-Phenylethanephosphonate
pdb|1M0Q|A Chain A, Structure Of Dialkylglycine Decarboxylase Complexed With
S- 1-Aminoethanephosphonate
pdb|1ZC9|A Chain A, The Crystal Structure Of Dialkylglycine Decarboxylase
Complex With Pyridoxamine 5-phosphate
pdb|1ZOB|A Chain A, Crystal Structure Of Dialkylglycine Decarboxylases Bound
With Calcium Ion
pdb|1ZOD|A Chain A, Crystal Structure Of Dialkylglycine Decarboxylase Bound
With Cesium Ion
pdb|1DKA|A Chain A, Dialkylglycine Decarboxylase Structure: Bifunctional
Active Site And Alkali Metal Binding Sites
pdb|2DKB|A Chain A, Dialkylglycine Decarboxylase Structure: Bifunctional
Active Site And Alkali Metal Binding Sites
Length = 433
Score = 100 bits (249), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 73/237 (30%), Positives = 115/237 (48%), Gaps = 23/237 (9%)
Query: 17 KSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAI 76
+S+ N+ AF+ EPI G + DGY+ ++ C +L I DE QTG+GRTG + A
Sbjct: 199 QSSGNLAAFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRTGTMFAC 258
Query: 77 HYEDVRPDIVILGKALSGGLYPISAVLADDEV------MGTLVPGTHGSTYGGNPLACKL 130
+ V PDI+ L K L GL P++A++ + +G L TH S +PL +
Sbjct: 259 QRDGVTPDILTLSKTLGAGL-PLAAIVTSAAIEERAHELGYLFYTTHVS----DPLPAAV 313
Query: 131 AMTALDVILEENMIENAYKMGEIFRSELRSRLSP-DIVPVVRGKGLLNA--IVLDKSILE 187
+ LDV+ + ++ A MG+ R L + D + VRG+GLL IV D+ E
Sbjct: 314 GLRVLDVVQRDGLVARANVMGDRLRRGLLDLMERFDCIGDVRGRGLLLGVEIVKDRRTKE 373
Query: 188 VYD--------VCIKMK-DAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTIN 235
D C+ + +V P + R++P L ++E E+ GL ++ I
Sbjct: 374 PADGLGAKITRECMNLGLSMNIVQLPGMGGVFRIAPPLTVSEDEIDLGLSLLGQAIE 430
>pdb|1Z3Z|A Chain A, The Crystal Structure Of A Dgd Mutant: Q52a
Length = 431
Score = 100 bits (249), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 73/237 (30%), Positives = 115/237 (48%), Gaps = 23/237 (9%)
Query: 17 KSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAI 76
+S+ N+ AF+ EPI G + DGY+ ++ C +L I DE QTG+GRTG + A
Sbjct: 197 QSSGNLAAFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRTGTMFAC 256
Query: 77 HYEDVRPDIVILGKALSGGLYPISAVLADDEV------MGTLVPGTHGSTYGGNPLACKL 130
+ V PDI+ L K L GL P++A++ + +G L TH S +PL +
Sbjct: 257 QRDGVTPDILTLSKTLGAGL-PLAAIVTSAAIEERAHELGYLFYTTHVS----DPLPAAV 311
Query: 131 AMTALDVILEENMIENAYKMGEIFRSELRSRLSP-DIVPVVRGKGLLNA--IVLDKSILE 187
+ LDV+ + ++ A MG+ R L + D + VRG+GLL IV D+ E
Sbjct: 312 GLRVLDVVQRDGLVARANVMGDRLRRGLLDLMERFDCIGDVRGRGLLLGVEIVKDRRTKE 371
Query: 188 VYD--------VCIKMK-DAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTIN 235
D C+ + +V P + R++P L ++E E+ GL ++ I
Sbjct: 372 PADGLGAKITRECMNLGLSMNIVQLPGMGGVFRIAPPLTVSEDEIDLGLSLLGQAIE 428
>pdb|2JJF|A Chain A, N328a Mutant Of M. Tuberculosis Rv3290c
Length = 449
Score = 99.8 bits (247), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 72/223 (32%), Positives = 107/223 (47%), Gaps = 16/223 (7%)
Query: 10 KQVPAKLKSNPN-ICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLG 68
+Q A ++ P+ I F+ EPIQGE G + +R LC +++ L I DEVQTG G
Sbjct: 219 RQARAAFETRPHDIACFVAEPIQGEGGDRHFRPEFFAAMRELCDEFDALLIFDEVQTGCG 278
Query: 69 RTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLAD---DEVMGTL--VPGTHGSTYGG 123
TG A DV PDIV GK + V+A DEV + VP ST+GG
Sbjct: 279 LTGTAWAYQQLDVAPDIVAFGKKTQ-----VCGVMAGRRVDEVADNVFAVPSRLASTWGG 333
Query: 124 NPLACKLAMTALDVILEENMIENAYKMGEIFRSELRSRLSPDIVPVV---RGKGLLNAIV 180
N A L+VI E + E A + G+ R+ L L+ D VV RG+GL+ A
Sbjct: 334 NLTDMVRARRILEVIEAEGLFERAVQHGKYLRARL-DELAADFPAVVLDPRGRGLMCAFS 392
Query: 181 LDKSILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQEL 223
L + + ++ ++ ++ P + +R P L ++ E+
Sbjct: 393 L-PTTADRDELIRQLWQRAVIVLPAGADTVRFRPPLTVSTAEI 434
>pdb|3LV2|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis
7,8-Diaminopelargonic Acid Synthase In Complex With
Substrate Analog Sinefungin
pdb|3LV2|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis
7,8-Diaminopelargonic Acid Synthase In Complex With
Substrate Analog Sinefungin
Length = 462
Score = 99.8 bits (247), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 66/219 (30%), Positives = 109/219 (49%), Gaps = 14/219 (6%)
Query: 6 PVKSKQVPAKLKSNPN-ICAFMVEPI-QGEAGAVVPDDGYLKKVRALCSQYNVLFIADEV 63
P S A+L + + A +VEP+ QG G D YL +R +C +Y VL I DE+
Sbjct: 222 PAYSAAFEAQLAQHAGELAAVVVEPVVQGAGGMRFHDPRYLHDLRDICRRYEVLLIFDEI 281
Query: 64 QTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGS---- 119
TG GRTG L A + V PDI+ +GKAL+GG ++A L +V T+ G G+
Sbjct: 282 ATGFGRTGALFAADHAGVSPDIMCVGKALTGGYLSLAATLCTADVAHTISAGAAGALMRG 341
Query: 120 -TYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELRSRLSPDIVPVVRGKGLLNA 178
T+ NPLAC +++ +++++L ++ ++ + L + + V VR G +
Sbjct: 342 PTFMANPLACAVSVASVELLLGQDWRTRITELAAGLTAGLDTARALPAVTDVRVCGAIGV 401
Query: 179 IVLDKSILEVYDVCIKMK---DAGLVTKPISNNIIRLSP 214
I D+ + D+ + D G+ +P N + + P
Sbjct: 402 IECDRPV----DLAVATPAALDRGVWLRPFRNLVYAMPP 436
>pdb|3BV0|A Chain A, Crystal Structure Of Plp Bound 7,8-Diaminopelargonic Acid
Synthase In Mycobacterium Tuberculosis
pdb|3BV0|B Chain B, Crystal Structure Of Plp Bound 7,8-Diaminopelargonic Acid
Synthase In Mycobacterium Tuberculosis
Length = 437
Score = 99.8 bits (247), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 66/219 (30%), Positives = 109/219 (49%), Gaps = 14/219 (6%)
Query: 6 PVKSKQVPAKLKSNPN-ICAFMVEPI-QGEAGAVVPDDGYLKKVRALCSQYNVLFIADEV 63
P S A+L + + A +VEP+ QG G D YL +R +C +Y VL I DE+
Sbjct: 197 PAYSAAFEAQLAQHAGELAAVVVEPVVQGAGGMRFHDPRYLHDLRDICRRYEVLLIFDEI 256
Query: 64 QTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGS---- 119
TG GRTG L A + V PDI+ +GKAL+GG ++A L +V T+ G G+
Sbjct: 257 ATGFGRTGALFAADHAGVSPDIMCVGKALTGGYLSLAATLCTADVAHTISAGAAGALMRG 316
Query: 120 -TYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELRSRLSPDIVPVVRGKGLLNA 178
T+ NPLAC +++ +++++L ++ ++ + L + + V VR G +
Sbjct: 317 PTFMANPLACAVSVASVELLLGQDWRTRITELAAGLTAGLDTARALPAVTDVRVCGAIGV 376
Query: 179 IVLDKSILEVYDVCIKMK---DAGLVTKPISNNIIRLSP 214
I D+ + D+ + D G+ +P N + + P
Sbjct: 377 IECDRPV----DLAVATPAALDRGVWLRPFRNLVYAMPP 411
>pdb|2CIN|A Chain A, Lysine Aminotransferase From M. Tuberculosis In The
Internal Aldimine Form
pdb|2CJG|A Chain A, Lysine Aminotransferase From M. Tuberculosis In Bound Pmp
Form
pdb|2CJH|A Chain A, Lysine Aminotransferase From M. Tuberculosis In The
Internal Aldimine Form With Bound Substrate 2-
Ketoglutarate
pdb|2JJG|A Chain A, Crystal Structure Of The M. Tuberculosis Lysine-Epsilon
Aminotransferase (Rv3290c) Complexed To An Inhibitor
pdb|2CJD|A Chain A, Lysine Aminotransferase From M. Tuberculosis In External
Aldimine Form
Length = 449
Score = 99.8 bits (247), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 72/223 (32%), Positives = 107/223 (47%), Gaps = 16/223 (7%)
Query: 10 KQVPAKLKSNPN-ICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLG 68
+Q A ++ P+ I F+ EPIQGE G + +R LC +++ L I DEVQTG G
Sbjct: 219 RQARAAFETRPHDIACFVAEPIQGEGGDRHFRPEFFAAMRELCDEFDALLIFDEVQTGCG 278
Query: 69 RTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLAD---DEVMGTL--VPGTHGSTYGG 123
TG A DV PDIV GK + V+A DEV + VP ST+GG
Sbjct: 279 LTGTAWAYQQLDVAPDIVAFGKKTQ-----VCGVMAGRRVDEVADNVFAVPSRLNSTWGG 333
Query: 124 NPLACKLAMTALDVILEENMIENAYKMGEIFRSELRSRLSPDIVPVV---RGKGLLNAIV 180
N A L+VI E + E A + G+ R+ L L+ D VV RG+GL+ A
Sbjct: 334 NLTDMVRARRILEVIEAEGLFERAVQHGKYLRARL-DELAADFPAVVLDPRGRGLMCAFS 392
Query: 181 LDKSILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQEL 223
L + + ++ ++ ++ P + +R P L ++ E+
Sbjct: 393 L-PTTADRDELIRQLWQRAVIVLPAGADTVRFRPPLTVSTAEI 434
>pdb|3I5T|A Chain A, Crystal Structure Of Aminotransferase Prk07036 From
Rhodobacter Sphaeroides Kd131
pdb|3I5T|B Chain B, Crystal Structure Of Aminotransferase Prk07036 From
Rhodobacter Sphaeroides Kd131
Length = 476
Score = 99.0 bits (245), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 66/240 (27%), Positives = 121/240 (50%), Gaps = 25/240 (10%)
Query: 21 NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIH-YE 79
I AF+ EPI G ++P GY + +A+C ++++L+I+DEV TG GR G+ A
Sbjct: 221 TIAAFLAEPILASGGVIIPPAGYHARFKAICEKHDILYISDEVVTGFGRCGEWFASEKVF 280
Query: 80 DVRPDIVILGKALSGGLYPISAVLADDEVM----GTLVPG---THGSTYGGNPLACKLAM 132
V PDI+ K ++ G P+ + + V+ G G T+G TY P+AC A+
Sbjct: 281 GVVPDIITFAKGVTSGYVPLGGLAISEAVLARISGENAKGSWFTNGYTYSNQPVACAAAL 340
Query: 133 TALDVILEENMIENAYKMGEIFRSELRSRLSPDIVPVVRGKGLLNAI--VLDKS------ 184
++++ E +++ A +M + F + L S V R GL+ + +LD +
Sbjct: 341 ANIELMEREGIVDQAREMADYFAAALASLRDLPGVAETRSVGLVGCVQCLLDPTRADGTA 400
Query: 185 -----ILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINTMAA 239
L++ + C ++ GL+ +P+ + + +SP L I+ ++ E + I+ I ++A
Sbjct: 401 EDKAFTLKIDERCFEL---GLIVRPLGDLCV-ISPPLIISRAQIDEMVAIMRQAITEVSA 456
>pdb|2JJE|A Chain A, Crystal Structure Of T330s Mutant Of Rv3290c From M.
Tuberculosis
Length = 449
Score = 98.2 bits (243), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 71/223 (31%), Positives = 107/223 (47%), Gaps = 16/223 (7%)
Query: 10 KQVPAKLKSNPN-ICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLG 68
+Q A ++ P+ I F+ EPIQGE G + +R LC +++ L I DEVQTG G
Sbjct: 219 RQARAAFETRPHDIACFVAEPIQGEGGDRHFRPEFFAAMRELCDEFDALLIFDEVQTGCG 278
Query: 69 RTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLAD---DEVMGTL--VPGTHGSTYGG 123
TG A DV PDIV GK + V+A DEV + VP S++GG
Sbjct: 279 LTGTAWAYQQLDVAPDIVAFGKKTQ-----VCGVMAGRRVDEVADNVFAVPSRLNSSWGG 333
Query: 124 NPLACKLAMTALDVILEENMIENAYKMGEIFRSELRSRLSPDIVPVV---RGKGLLNAIV 180
N A L+VI E + E A + G+ R+ L L+ D VV RG+GL+ A
Sbjct: 334 NLTDMVRARRILEVIEAEGLFERAVQHGKYLRARL-DELAADFPAVVLDPRGRGLMCAFS 392
Query: 181 LDKSILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQEL 223
L + + ++ ++ ++ P + +R P L ++ E+
Sbjct: 393 L-PTTADRDELIRQLWQRAVIVLPAGADTVRFRPPLTVSTAEI 434
>pdb|2JJH|A Chain A, E243 Mutant Of M. Tuberculosis Rv3290c
Length = 449
Score = 97.1 bits (240), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 71/223 (31%), Positives = 106/223 (47%), Gaps = 16/223 (7%)
Query: 10 KQVPAKLKSNPN-ICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLG 68
+Q A ++ P+ I F+ EPIQG G + +R LC +++ L I DEVQTG G
Sbjct: 219 RQARAAFETRPHDIACFVAEPIQGAGGDRHFRPEFFAAMRELCDEFDALLIFDEVQTGCG 278
Query: 69 RTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLAD---DEVMGTL--VPGTHGSTYGG 123
TG A DV PDIV GK + V+A DEV + VP ST+GG
Sbjct: 279 LTGTAWAYQQLDVAPDIVAFGKKTQ-----VCGVMAGRRVDEVADNVFAVPSRLNSTWGG 333
Query: 124 NPLACKLAMTALDVILEENMIENAYKMGEIFRSELRSRLSPDIVPVV---RGKGLLNAIV 180
N A L+VI E + E A + G+ R+ L L+ D VV RG+GL+ A
Sbjct: 334 NLTDMVRARRILEVIEAEGLFERAVQHGKYLRARL-DELAADFPAVVLDPRGRGLMCAFS 392
Query: 181 LDKSILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQEL 223
L + + ++ ++ ++ P + +R P L ++ E+
Sbjct: 393 L-PTTADRDELIRQLWQRAVIVLPAGADTVRFRPPLTVSTAEI 434
>pdb|4A6R|A Chain A, Crystal Structure Of The Omega Transaminase From
Chromobacterium Violaceum In The Apo Form, Crystallised
From Polyacrylic Acid
pdb|4A6R|B Chain B, Crystal Structure Of The Omega Transaminase From
Chromobacterium Violaceum In The Apo Form, Crystallised
From Polyacrylic Acid
pdb|4A6T|A Chain A, Crystal Structure Of The Omega Transaminase From
Chromobacterium Violaceum In Complex With Plp
pdb|4A6T|B Chain B, Crystal Structure Of The Omega Transaminase From
Chromobacterium Violaceum In Complex With Plp
pdb|4A6T|C Chain C, Crystal Structure Of The Omega Transaminase From
Chromobacterium Violaceum In Complex With Plp
pdb|4A6T|D Chain D, Crystal Structure Of The Omega Transaminase From
Chromobacterium Violaceum In Complex With Plp
pdb|4A6U|A Chain A, Crystal Structure Of The Omega Transaminase From
Chromobacterium Violaceum In The Apo Form, Crystallised
From Peg 3350
pdb|4A6U|B Chain B, Crystal Structure Of The Omega Transaminase From
Chromobacterium Violaceum In The Apo Form, Crystallised
From Peg 3350
pdb|4A72|A Chain A, Crystal Structure Of The Omega Transaminase From
Chromobacterium Violaceum In A Mixture Of Apo And
Plp-Bound States
pdb|4A72|B Chain B, Crystal Structure Of The Omega Transaminase From
Chromobacterium Violaceum In A Mixture Of Apo And
Plp-Bound States
pdb|4A72|C Chain C, Crystal Structure Of The Omega Transaminase From
Chromobacterium Violaceum In A Mixture Of Apo And
Plp-Bound States
pdb|4A72|D Chain D, Crystal Structure Of The Omega Transaminase From
Chromobacterium Violaceum In A Mixture Of Apo And
Plp-Bound States
pdb|4AH3|A Chain A, Crystal Structure Of The Holo Omega-Transaminase From
Chromobacterium Violaceum
pdb|4AH3|B Chain B, Crystal Structure Of The Holo Omega-Transaminase From
Chromobacterium Violaceum
pdb|4AH3|C Chain C, Crystal Structure Of The Holo Omega-Transaminase From
Chromobacterium Violaceum
pdb|4AH3|D Chain D, Crystal Structure Of The Holo Omega-Transaminase From
Chromobacterium Violaceum
Length = 459
Score = 95.5 bits (236), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 56/169 (33%), Positives = 85/169 (50%), Gaps = 5/169 (2%)
Query: 21 NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYED 80
+ AF+ EPIQG G +VP Y ++ +C +Y+VL +ADEV G GRTG+ +
Sbjct: 219 KVAAFVGEPIQGAGGVIVPPATYWPEIERICRKYDVLLVADEVICGFGRTGEWFGHQHFG 278
Query: 81 VRPDIVILGKALSGGLYPISAVLADDEVMGTLVPG---THGSTYGGNPLACKLAMTALDV 137
+PD+ K LS G PI AV V L+ G HG TY G+P+ +A +
Sbjct: 279 FQPDLFTAAKGLSSGYLPIGAVFVGKRVAEGLIAGGDFNHGFTYSGHPVCAAVAHANVAA 338
Query: 138 ILEENMIENAY-KMGEIFRSELRSRLSP-DIVPVVRGKGLLNAIVLDKS 184
+ +E +++ +G + R S + V VRG G++ A L K+
Sbjct: 339 LRDEGIVQRVKDDIGPYMQKRWRETFSRFEHVDDVRGVGMVQAFTLVKN 387
>pdb|1QJ3|A Chain A, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
In Complex With 7-Keto-8-Aminopelargonic Acid
pdb|1QJ3|B Chain B, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
In Complex With 7-Keto-8-Aminopelargonic Acid
pdb|1QJ5|A Chain A, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
pdb|1QJ5|B Chain B, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
pdb|1MLY|A Chain A, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
In Complex With The Cis Isomer Of Amiclenomycin
pdb|1MLY|B Chain B, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
In Complex With The Cis Isomer Of Amiclenomycin
pdb|1MLZ|A Chain A, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
In Complex With The Trans-Isomer Of Amiclenomycin.
pdb|1MLZ|B Chain B, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
In Complex With The Trans-Isomer Of Amiclenomycin
Length = 429
Score = 94.7 bits (234), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 76/216 (35%), Positives = 113/216 (52%), Gaps = 20/216 (9%)
Query: 21 NICAFMVEPI-QGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYE 79
I A ++EPI QG G + +LK++R +C + +L IADE+ TG GRTGKL A +
Sbjct: 204 EIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTGKLFACEHA 263
Query: 80 DVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGT-----HGSTYGGNPLACKLAMTA 134
++ PDI+ LGKAL+GG +SA L EV T+ G HG T+ GNPLA A A
Sbjct: 264 EIAPDILCLGKALTGGTMTLSATLTTREVAETISNGEAGCFMHGPTFMGNPLA-CAAANA 322
Query: 135 LDVILEENMIENAYKMGEIFRSELRSRLSP----DIVPVVRGKGLLNAIVLDKSILEVYD 190
ILE + E+ +LR +L+P ++V VR +L AI + ++ V
Sbjct: 323 SLAILESGDWQQQVADIEV---QLREQLAPARDAEMVADVR---VLGAIGVVETTHPVNM 376
Query: 191 VCIK--MKDAGLVTKPISNNIIRLSPALNITEQELR 224
++ + G+ +P +I L P I Q+L+
Sbjct: 377 AALQKFFVEQGVWIRPF-GKLIYLMPPYIILPQQLQ 411
>pdb|1DTY|A Chain A, Crystal Structure Of
Adenosylmethionine-8-Amino-7-Oxonanoate Aminotransferase
With Pyridoxal Phosphate Cofactor.
pdb|1DTY|B Chain B, Crystal Structure Of
Adenosylmethionine-8-Amino-7-Oxonanoate Aminotransferase
With Pyridoxal Phosphate Cofactor
Length = 429
Score = 94.7 bits (234), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 50/112 (44%), Positives = 68/112 (60%), Gaps = 6/112 (5%)
Query: 21 NICAFMVEPI-QGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYE 79
I A ++EPI QG G + +LK++R +C + +L IADE+ TG GRTGKL A +
Sbjct: 204 EIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTGKLFACEHA 263
Query: 80 DVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGT-----HGSTYGGNPL 126
++ PDI+ LGKAL+GG +SA L EV T+ G HG T+ GNPL
Sbjct: 264 EIAPDILCLGKALTGGTMTLSATLTTREVAETISDGEAGCFMHGPTFMGNPL 315
>pdb|1MGV|A Chain A, Crystal Structure Of The R391a Mutant Of
7,8-Diaminopelargonic Acid Synthase
pdb|1MGV|B Chain B, Crystal Structure Of The R391a Mutant Of
7,8-Diaminopelargonic Acid Synthase
Length = 429
Score = 94.4 bits (233), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 50/112 (44%), Positives = 68/112 (60%), Gaps = 6/112 (5%)
Query: 21 NICAFMVEPI-QGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYE 79
I A ++EPI QG G + +LK++R +C + +L IADE+ TG GRTGKL A +
Sbjct: 204 EIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTGKLFACEHA 263
Query: 80 DVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGT-----HGSTYGGNPL 126
++ PDI+ LGKAL+GG +SA L EV T+ G HG T+ GNPL
Sbjct: 264 EIAPDILCLGKALTGGTMTLSATLTTREVAETISNGEAGCFMHGPTFMGNPL 315
>pdb|1S08|A Chain A, Crystal Structure Of The D147n Mutant Of 7,8-
Diaminopelargonic Acid Synthase
pdb|1S08|B Chain B, Crystal Structure Of The D147n Mutant Of 7,8-
Diaminopelargonic Acid Synthase
Length = 429
Score = 92.8 bits (229), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 75/216 (34%), Positives = 112/216 (51%), Gaps = 20/216 (9%)
Query: 21 NICAFMVEPI-QGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYE 79
I A ++EPI QG G + +LK++R +C + +L IADE+ TG GRTGKL A +
Sbjct: 204 EIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTGKLFACEHA 263
Query: 80 DVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGT-----HGSTYGGNPLACKLAMTA 134
++ PDI+ LG AL+GG +SA L EV T+ G HG T+ GNPLA A A
Sbjct: 264 EIAPDILCLGXALTGGTMTLSATLTTREVAETISNGEAGCFMHGPTFMGNPLA-CAAANA 322
Query: 135 LDVILEENMIENAYKMGEIFRSELRSRLSP----DIVPVVRGKGLLNAIVLDKSILEVYD 190
ILE + E+ +LR +L+P ++V VR +L AI + ++ V
Sbjct: 323 SLAILESGDWQQQVADIEV---QLREQLAPARDAEMVADVR---VLGAIGVVETTHPVNM 376
Query: 191 VCIK--MKDAGLVTKPISNNIIRLSPALNITEQELR 224
++ + G+ +P +I L P I Q+L+
Sbjct: 377 AALQKFFVEQGVWIRPF-GKLIYLMPPYIILPQQLQ 411
>pdb|1S09|A Chain A, Crystal Structure Of The Y144f Mutant Of 7,8-
Diaminopelargonic Acid Synthase
pdb|1S09|B Chain B, Crystal Structure Of The Y144f Mutant Of 7,8-
Diaminopelargonic Acid Synthase
Length = 429
Score = 92.8 bits (229), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 74/218 (33%), Positives = 112/218 (51%), Gaps = 24/218 (11%)
Query: 21 NICAFMVEPI-QGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYE 79
I A ++EPI QG G + +LK++R +C + +L IADE+ TG GRTGKL A +
Sbjct: 204 EIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTGKLFACEHA 263
Query: 80 DVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGT-----HGSTYGGNPLACKLAMTA 134
++ PDI+ LG AL+GG +SA L EV T+ G HG T+ GNPLA A A
Sbjct: 264 EIAPDILCLGXALTGGTMTLSATLTTREVAETISNGEAGCFMHGPTFMGNPLA-CAAANA 322
Query: 135 LDVILEENMIENAYKMGEIFRSELRSRLSP----DIVPVVRGKGLLNAIV----LDKSIL 186
ILE + E+ +LR +L+P ++V VR G + + ++ + L
Sbjct: 323 SLAILESGDWQQQVADIEV---QLREQLAPARDAEMVADVRVLGAIGVVETTHPVNMAAL 379
Query: 187 EVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELR 224
+ + V + G+ +P +I L P I Q+L+
Sbjct: 380 QKFFV-----EQGVWIRPF-GKLIYLMPPYIILPQQLQ 411
>pdb|1S0A|A Chain A, Crystal Structure Of The Y17f Mutant Of 7,8-
Diaminopelargonic Acid Synthase
pdb|1S0A|B Chain B, Crystal Structure Of The Y17f Mutant Of 7,8-
Diaminopelargonic Acid Synthase
Length = 429
Score = 92.8 bits (229), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 74/218 (33%), Positives = 112/218 (51%), Gaps = 24/218 (11%)
Query: 21 NICAFMVEPI-QGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYE 79
I A ++EPI QG G + +LK++R +C + +L IADE+ TG GRTGKL A +
Sbjct: 204 EIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTGKLFACEHA 263
Query: 80 DVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGT-----HGSTYGGNPLACKLAMTA 134
++ PDI+ LG AL+GG +SA L EV T+ G HG T+ GNPLA A A
Sbjct: 264 EIAPDILCLGXALTGGTMTLSATLTTREVAETISNGEAGCFMHGPTFMGNPLA-CAAANA 322
Query: 135 LDVILEENMIENAYKMGEIFRSELRSRLSP----DIVPVVRGKGLLNAIV----LDKSIL 186
ILE + E+ +LR +L+P ++V VR G + + ++ + L
Sbjct: 323 SLAILESGDWQQQVADIEV---QLREQLAPARDAEMVADVRVLGAIGVVETTHPVNMAAL 379
Query: 187 EVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELR 224
+ + V + G+ +P +I L P I Q+L+
Sbjct: 380 QKFFV-----EQGVWIRPF-GKLIYLMPPYIILPQQLQ 411
>pdb|3FCR|A Chain A, Crystal Structure Of Putative Aminotransferase
(Yp_614685.1) From Silicibacter Sp. Tm1040 At 1.80 A
Resolution
Length = 459
Score = 92.4 bits (228), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 60/185 (32%), Positives = 93/185 (50%), Gaps = 11/185 (5%)
Query: 22 ICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDV 81
I AF+ EPI G G V P GY + ++ + +++++L +ADEV TG GR G + +
Sbjct: 221 IAAFIGEPILGTGGIVPPPAGYWEAIQTVLNKHDILLVADEVVTGFGRLGTXFGSDHYGL 280
Query: 82 RPDIV-ILGKALSGGLYPISAVLADDEVMGTLVPGT-------HGSTYGGNPLACKLAMT 133
PDI+ I K L+ P+S + D+V L GT HG TY +P+ +
Sbjct: 281 EPDIITIAXKGLTSAYAPLSGSIVSDKVWKVLEQGTDENGPIGHGWTYSAHPIGAAAGVA 340
Query: 134 ALDVILEENMIENAYKMGEIFRSELRSRLSPDI-VPVVRGKGLLNAI--VLDKSILEVYD 190
L ++ E N++ NA ++G + LS V VRG+GLL A+ V D+ +D
Sbjct: 341 NLKLLDELNLVSNAGEVGAYLNATXAEALSQHANVGDVRGEGLLCAVEFVKDRDSRTFFD 400
Query: 191 VCIKM 195
K+
Sbjct: 401 AADKI 405
>pdb|1S07|A Chain A, Crystal Structure Of The R253a Mutant Of
7,8-Diaminopelargonic Acid Synthase
pdb|1S07|B Chain B, Crystal Structure Of The R253a Mutant Of
7,8-Diaminopelargonic Acid Synthase
Length = 429
Score = 91.7 bits (226), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 75/216 (34%), Positives = 112/216 (51%), Gaps = 20/216 (9%)
Query: 21 NICAFMVEPI-QGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYE 79
I A ++EPI QG G + +LK++R +C + +L IADE+ TG G TGKL A +
Sbjct: 204 EIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGATGKLFACEHA 263
Query: 80 DVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGT-----HGSTYGGNPLACKLAMTA 134
++ PDI+ LGKAL+GG +SA L EV T+ G HG T+ GNPLA A A
Sbjct: 264 EIAPDILCLGKALTGGTMTLSATLTTREVAETISNGEAGCFMHGPTFMGNPLA-CAAANA 322
Query: 135 LDVILEENMIENAYKMGEIFRSELRSRLSP----DIVPVVRGKGLLNAIVLDKSILEVYD 190
ILE + E+ +LR +L+P ++V VR +L AI + ++ V
Sbjct: 323 SLAILESGDWQQQVADIEV---QLREQLAPARDAEMVADVR---VLGAIGVVETTHPVNM 376
Query: 191 VCIK--MKDAGLVTKPISNNIIRLSPALNITEQELR 224
++ + G+ +P +I L P I Q+L+
Sbjct: 377 AALQKFFVEQGVWIRPF-GKLIYLMPPYIILPQQLQ 411
>pdb|1S06|A Chain A, Crystal Structure Of The R253k Mutant Of 7,8-
Diaminopelargonic Acid Synthase
pdb|1S06|B Chain B, Crystal Structure Of The R253k Mutant Of 7,8-
Diaminopelargonic Acid Synthase
Length = 429
Score = 90.9 bits (224), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 74/216 (34%), Positives = 112/216 (51%), Gaps = 20/216 (9%)
Query: 21 NICAFMVEPI-QGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYE 79
I A ++EPI QG G + +LK++R +C + +L IADE+ TG G+TGKL A +
Sbjct: 204 EIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGKTGKLFACEHA 263
Query: 80 DVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGT-----HGSTYGGNPLACKLAMTA 134
++ PDI+ LG AL+GG +SA L EV T+ G HG T+ GNPLA A A
Sbjct: 264 EIAPDILCLGXALTGGTMTLSATLTTREVAETISNGEAGCFMHGPTFMGNPLA-CAAANA 322
Query: 135 LDVILEENMIENAYKMGEIFRSELRSRLSP----DIVPVVRGKGLLNAIVLDKSILEVYD 190
ILE + E+ +LR +L+P ++V VR +L AI + ++ V
Sbjct: 323 SLAILESGDWQQQVADIEV---QLREQLAPARDAEMVADVR---VLGAIGVVETTHPVNM 376
Query: 191 VCIK--MKDAGLVTKPISNNIIRLSPALNITEQELR 224
++ + G+ +P +I L P I Q+L+
Sbjct: 377 AALQKFFVEQGVWIRPF-GKLIYLMPPYIILPQQLQ 411
>pdb|3DXW|A Chain A, The Crystal Structure Of Alpha-Amino-Epsilon-Caprolactam
Racemase From Achromobacter Obae Complexed With Epsilon
Caprolactam
pdb|3DXW|B Chain B, The Crystal Structure Of Alpha-Amino-Epsilon-Caprolactam
Racemase From Achromobacter Obae Complexed With Epsilon
Caprolactam
Length = 452
Score = 89.7 bits (221), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 70/239 (29%), Positives = 122/239 (51%), Gaps = 18/239 (7%)
Query: 15 KLKSNP--NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGK 72
KL + P +I A +EPIQ + G +VP DG+L+K +C + +L + DEV+ GL R+G+
Sbjct: 206 KLAAVPAGSIGAAFIEPIQSDGGLIVPPDGFLRKFADICRAHGILVVCDEVKVGLARSGR 265
Query: 73 LLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAM 132
L +E PDI++L GG P+SAV+A E++ T GNP++ +
Sbjct: 266 LHCFEHEGFVPDILVL-GKGLGGGLPLSAVIAPAEIL-DCASAFAMQTLHGNPISAAAGL 323
Query: 133 TALDVILEENMIENAYKMGEIFR---SELRSRLSPDIVPVVRGKGLLNAIVL-------D 182
L+ I +++ A + G + R SEL R ++ +RG+GL + L +
Sbjct: 324 AVLETIDRDDLPAMAERKGRLLRDGLSELAKRHP--LIGDIRGRGLACGMELVCDRQSRE 381
Query: 183 KSILEVYDVCIKMKDAGLVTKPI--SNNIIRLSPALNITEQELREGLDIIINTINTMAA 239
+ E + + GLV + + N++ +P L ITE ++ + LD++ + ++A
Sbjct: 382 PARAETAKLIYRAYQLGLVVYYVGMNGNVLEFTPPLTITETDIHKALDLLDRAFSELSA 440
>pdb|2ZUK|A Chain A, The Crystal Structure Of Alpha-Amino-Epsilon-Caprolactam
Racemase From Achromobacter Obae Complexed With Epsilon
Caprolactam (Different Binding Mode)
pdb|2ZUK|B Chain B, The Crystal Structure Of Alpha-Amino-Epsilon-Caprolactam
Racemase From Achromobacter Obae Complexed With Epsilon
Caprolactam (Different Binding Mode)
pdb|3DXV|A Chain A, The Crystal Structure Of Alpha-Amino-Epsilon-Caprolactam
Racemase From Achromobacter Obae
pdb|3DXV|B Chain B, The Crystal Structure Of Alpha-Amino-Epsilon-Caprolactam
Racemase From Achromobacter Obae
Length = 439
Score = 89.7 bits (221), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 70/239 (29%), Positives = 122/239 (51%), Gaps = 18/239 (7%)
Query: 15 KLKSNP--NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGK 72
KL + P +I A +EPIQ + G +VP DG+L+K +C + +L + DEV+ GL R+G+
Sbjct: 193 KLAAVPAGSIGAAFIEPIQSDGGLIVPPDGFLRKFADICRAHGILVVCDEVKVGLARSGR 252
Query: 73 LLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAM 132
L +E PDI++L GG P+SAV+A E++ T GNP++ +
Sbjct: 253 LHCFEHEGFVPDILVL-GKGLGGGLPLSAVIAPAEIL-DCASAFAMQTLHGNPISAAAGL 310
Query: 133 TALDVILEENMIENAYKMGEIFR---SELRSRLSPDIVPVVRGKGLLNAIVL-------D 182
L+ I +++ A + G + R SEL R ++ +RG+GL + L +
Sbjct: 311 AVLETIDRDDLPAMAERKGRLLRDGLSELAKRHP--LIGDIRGRGLACGMELVCDRQSRE 368
Query: 183 KSILEVYDVCIKMKDAGLVTKPI--SNNIIRLSPALNITEQELREGLDIIINTINTMAA 239
+ E + + GLV + + N++ +P L ITE ++ + LD++ + ++A
Sbjct: 369 PARAETAKLIYRAYQLGLVVYYVGMNGNVLEFTPPLTITETDIHKALDLLDRAFSELSA 427
>pdb|2E7U|A Chain A, Crystal Structure Of Glutamate-1-Semialdehyde
2,1-Aminomutase From Thermus Thermophilus Hb8
Length = 424
Score = 75.1 bits (183), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 62/180 (34%), Positives = 88/180 (48%), Gaps = 21/180 (11%)
Query: 17 KSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTG----LGRTGK 72
+ I A + EP+ G AG +VP + +LK + Y VL IADEV TG G +
Sbjct: 195 RRGEEIAAIIFEPVVGNAGVLVPTEDFLKALHE-AKAYGVLLIADEVMTGFRLAFGGATE 253
Query: 73 LLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVM---GTLVPGTHGSTYGGNPLACK 129
LL + +PD+V LGK L GGL P +A E+M L P T GNPLA
Sbjct: 254 LLGL-----KPDLVTLGKILGGGL-PAAAYAGRREIMEKVAPLGPVYQAGTLSGNPLAMA 307
Query: 130 LAMTALDVILEENMIENAYKMGEIFRSELRSRLSPDIVPVVRGKGLLNAIVLDKSILEVY 189
+ L+ +LEEN AY +L +RL + V++ KGL + + S++ V+
Sbjct: 308 AGLATLE-LLEENPGYYAYL------EDLGARLEAGLKEVLKEKGLPHTVNRVGSMITVF 360
>pdb|3BS8|A Chain A, Crystal Structure Of Glutamate 1-Semialdehyde
Aminotransferase Complexed With
Pyridoxamine-5'-Phosphate From Bacillus Subtilis
Length = 438
Score = 71.2 bits (173), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 44/118 (37%), Positives = 58/118 (49%), Gaps = 5/118 (4%)
Query: 21 NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYED 80
+I +VEP+ G G V P +G+L+ +R + QY L I DEV TG R A Y
Sbjct: 208 DIAGVIVEPVAGNMGVVPPQEGFLQGLRDITEQYGSLLIFDEVMTGF-RVDYNCAQGYFG 266
Query: 81 VRPDIVILGKALSGGLYPISAVLADDEVMGTLVPG---THGSTYGGNPLACKLAMTAL 135
V PD+ LGK + GGL P+ A E+M + P T GNPLA + L
Sbjct: 267 VTPDLTCLGKVIGGGL-PVGAYGGKAEIMEQIAPSGPIYQAGTLSGNPLAMTAGLETL 323
>pdb|2CFB|A Chain A, Glutamate-1-Semialdehyde 2,1-Aminomutase From
Thermosynechococcus Elongatus
Length = 411
Score = 70.9 bits (172), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 46/135 (34%), Positives = 65/135 (48%), Gaps = 6/135 (4%)
Query: 16 LKSNPN-ICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLL 74
+ PN I ++EP+ G AG + PD G+L+ +R L QY L + DEV TG R
Sbjct: 177 FEQYPNDIAGVILEPVVGNAGFIPPDAGFLEGLRELTKQYGALLVFDEVMTGF-RIAYGG 235
Query: 75 AIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPG---THGSTYGGNPLACKLA 131
A V PD+ LGK + GGL P+ A E+M + P T GNPLA
Sbjct: 236 AQEKFGVTPDLTTLGKVIGGGL-PVGAYGGRAEIMKMVAPAGPVYQAGTLSGNPLAMTAG 294
Query: 132 MTALDVILEENMIEN 146
+ L+++ E+
Sbjct: 295 IKTLEILSRPGSYEH 309
>pdb|1OHV|A Chain A, 4-aminobutyrate-aminotransferase From Pig
pdb|1OHV|B Chain B, 4-aminobutyrate-aminotransferase From Pig
pdb|1OHV|C Chain C, 4-aminobutyrate-aminotransferase From Pig
pdb|1OHV|D Chain D, 4-aminobutyrate-aminotransferase From Pig
pdb|1OHW|A Chain A, 4-Aminobutyrate-Aminotransferase Inactivated By
Gamma-Vinyl Gaba
pdb|1OHW|B Chain B, 4-Aminobutyrate-Aminotransferase Inactivated By
Gamma-Vinyl Gaba
pdb|1OHW|C Chain C, 4-Aminobutyrate-Aminotransferase Inactivated By
Gamma-Vinyl Gaba
pdb|1OHW|D Chain D, 4-Aminobutyrate-Aminotransferase Inactivated By
Gamma-Vinyl Gaba
pdb|1OHY|A Chain A, 4-Aminobutyrate-Aminotransferase Inactivated By
Gamma-Ethynyl Gaba
pdb|1OHY|B Chain B, 4-Aminobutyrate-Aminotransferase Inactivated By
Gamma-Ethynyl Gaba
pdb|1OHY|C Chain C, 4-Aminobutyrate-Aminotransferase Inactivated By
Gamma-Ethynyl Gaba
pdb|1OHY|D Chain D, 4-Aminobutyrate-Aminotransferase Inactivated By
Gamma-Ethynyl Gaba
Length = 472
Score = 69.7 bits (169), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 55/221 (24%), Positives = 98/221 (44%), Gaps = 17/221 (7%)
Query: 17 KSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAI 76
K + +VEPIQ E G D + +K+R + ++ F+ DEVQTG G TGK A
Sbjct: 254 KKKKTVAGIIVEPIQSEGGDNHASDDFFRKLRDISRKHGCAFLVDEVQTGGGSTGKFWAH 313
Query: 77 HYE--DVRPDIVILGKA-LSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMT 133
+ D D++ K ++GG + E P +T+ G+P L
Sbjct: 314 EHWGLDDPADVMTFSKKMMTGGFF-------HKEEFRPNAPYRIFNTWLGDPSKNLLLAE 366
Query: 134 ALDVILEENMIENAYKMGEIFRS---ELRSRLSPDIVPVVRGKGLLNAIVLDKSILEVYD 190
+++I E+++ NA G++ + +L++R P + VRG+G + D + +
Sbjct: 367 VINIIKREDLLSNAAHAGKVLLTGLLDLQARY-PQFISRVRGRGTFCS--FDTPDESIRN 423
Query: 191 VCIKM-KDAGLVTKPISNNIIRLSPALNITEQELREGLDII 230
I + ++ G++ + IR P L + L+I
Sbjct: 424 KLISIARNKGVMLGGCGDKSIRFRPTLVFRDHHAHLFLNIF 464
>pdb|2HOY|A Chain A, Inter-Subunit Signaling In Gsam
pdb|2HOY|B Chain B, Inter-Subunit Signaling In Gsam
pdb|2HOZ|A Chain A, Inter-Subunit Signaling In Gsam
pdb|2HOZ|B Chain B, Inter-Subunit Signaling In Gsam
pdb|2HP1|A Chain A, Inter-Subunit Signaling In Gsam
pdb|2HP1|B Chain B, Inter-Subunit Signaling In Gsam
pdb|2HP2|A Chain A, Inter-Subunit Signaling In Gsam
pdb|2HP2|B Chain B, Inter-Subunit Signaling In Gsam
Length = 432
Score = 67.8 bits (164), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 49/169 (28%), Positives = 79/169 (46%), Gaps = 14/169 (8%)
Query: 10 KQVPAKLKSNPN-ICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLG 68
+ V A NP I ++EPI G +G +VPD G+L+ +R + +++ L + DEV TG
Sbjct: 192 EAVKALFAENPGEIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVFDEVMTGF- 250
Query: 69 RTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPG---THGSTYGGNP 125
R V PD+ LGK + GGL P+ A E+M + P T GNP
Sbjct: 251 RIAYGGVQEKFGVTPDLTTLGKIIGGGL-PVGAYGGKREIMQLVAPAGPMYQAGTLSGNP 309
Query: 126 LACKLAMTALDVILEENMIENAYKMGEIFRSELRSRLSPDIVPVVRGKG 174
LA + L+++ + E + ++ RLS ++ + + G
Sbjct: 310 LAMTAGIKTLELLRQPGTYE--------YLDQITKRLSDGLLAIAQETG 350
>pdb|3FQ7|A Chain A, Gabaculine Complex Of Gsam
pdb|3FQ7|B Chain B, Gabaculine Complex Of Gsam
pdb|3USF|A Chain A, Crystal Structure Of Dava-4
pdb|3USF|B Chain B, Crystal Structure Of Dava-4
Length = 427
Score = 67.8 bits (164), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 49/169 (28%), Positives = 79/169 (46%), Gaps = 14/169 (8%)
Query: 10 KQVPAKLKSNPN-ICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLG 68
+ V A NP I ++EPI G +G +VPD G+L+ +R + +++ L + DEV TG
Sbjct: 187 EAVKALFAENPGEIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVFDEVMTGF- 245
Query: 69 RTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPG---THGSTYGGNP 125
R V PD+ LGK + GGL P+ A E+M + P T GNP
Sbjct: 246 RIAYGGVQEKFGVTPDLTTLGKIIGGGL-PVGAYGGKREIMQLVAPAGPMYQAGTLSGNP 304
Query: 126 LACKLAMTALDVILEENMIENAYKMGEIFRSELRSRLSPDIVPVVRGKG 174
LA + L+++ + E + ++ RLS ++ + + G
Sbjct: 305 LAMTAGIKTLELLRQPGTYE--------YLDQITKRLSDGLLAIAQETG 345
>pdb|2GSA|A Chain A, Crystal Structure Of Glutamate-1-Semialdehyde Aminomutase
(Aminotransferase, Wild-Type Form)
pdb|2GSA|B Chain B, Crystal Structure Of Glutamate-1-Semialdehyde Aminomutase
(Aminotransferase, Wild-Type Form)
pdb|4GSA|A Chain A, Crystal Structure Of Glutamate-1-semialdehyde Aminomutase
(aminotransferase) Reduced With Cyanoborohydrate
pdb|4GSA|B Chain B, Crystal Structure Of Glutamate-1-semialdehyde Aminomutase
(aminotransferase) Reduced With Cyanoborohydrate
pdb|3GSB|A Chain A, Crystal Structure Of Glutamate-1-Semialdehyde Aminomutase
In Complex With Gabaculine
pdb|3GSB|B Chain B, Crystal Structure Of Glutamate-1-Semialdehyde Aminomutase
In Complex With Gabaculine
Length = 432
Score = 67.8 bits (164), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 49/169 (28%), Positives = 79/169 (46%), Gaps = 14/169 (8%)
Query: 10 KQVPAKLKSNPN-ICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLG 68
+ V A NP I ++EPI G +G +VPD G+L+ +R + +++ L + DEV TG
Sbjct: 192 EAVKALFAENPGEIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVFDEVMTGF- 250
Query: 69 RTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPG---THGSTYGGNP 125
R V PD+ LGK + GGL P+ A E+M + P T GNP
Sbjct: 251 RIAYGGVQEKFGVTPDLTTLGKIIGGGL-PVGAYGGKREIMQLVAPAGPMYQAGTLSGNP 309
Query: 126 LACKLAMTALDVILEENMIENAYKMGEIFRSELRSRLSPDIVPVVRGKG 174
LA + L+++ + E + ++ RLS ++ + + G
Sbjct: 310 LAMTAGIKTLELLRQPGTYE--------YLDQITKRLSDGLLAIAQETG 350
>pdb|3FQA|A Chain A, Gabaculien Complex Of Gabaculine Resistant Gsam Version
pdb|3FQA|B Chain B, Gabaculien Complex Of Gabaculine Resistant Gsam Version
Length = 427
Score = 66.6 bits (161), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/169 (28%), Positives = 79/169 (46%), Gaps = 14/169 (8%)
Query: 10 KQVPAKLKSNPN-ICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLG 68
+ V A NP I ++EPI G +G +VPD G+L+ +R + +++ L + DEV TG
Sbjct: 187 EAVKALFAENPGEIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVFDEVITGF- 245
Query: 69 RTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPG---THGSTYGGNP 125
R V PD+ LGK + GGL P+ A E+M + P T GNP
Sbjct: 246 RIAYGGVQEKFGVTPDLTTLGKIIGGGL-PVGAYGGKREIMQLVAPAGPMYQAGTLSGNP 304
Query: 126 LACKLAMTALDVILEENMIENAYKMGEIFRSELRSRLSPDIVPVVRGKG 174
LA + L+++ + E + ++ RLS ++ + + G
Sbjct: 305 LAMTAGIKTLELLRQPGTYE--------YLDQITKRLSDGLLAIAQETG 345
>pdb|3FQ8|A Chain A, M248i Mutant Of Gsam
pdb|3FQ8|B Chain B, M248i Mutant Of Gsam
Length = 427
Score = 66.6 bits (161), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/169 (28%), Positives = 79/169 (46%), Gaps = 14/169 (8%)
Query: 10 KQVPAKLKSNPN-ICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLG 68
+ V A NP I ++EPI G +G +VPD G+L+ +R + +++ L + DEV TG
Sbjct: 187 EAVKALFAENPGEIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVFDEVITGF- 245
Query: 69 RTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPG---THGSTYGGNP 125
R V PD+ LGK + GGL P+ A E+M + P T GNP
Sbjct: 246 RIAYGGVQEKFGVTPDLTTLGKIIGGGL-PVGAYGGKREIMQLVAPAGPMYQAGTLSGNP 304
Query: 126 LACKLAMTALDVILEENMIENAYKMGEIFRSELRSRLSPDIVPVVRGKG 174
LA + L+++ + E + ++ RLS ++ + + G
Sbjct: 305 LAMTAGIKTLELLRQPGTYE--------YLDQITKRLSDGLLAIAQETG 345
>pdb|4E77|A Chain A, 2.0a Crystal Structure Of A Glutamate-1-Semialdehyde
Aminotransferase From Yersinia Pestis Co92
Length = 429
Score = 65.9 bits (159), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 46/152 (30%), Positives = 67/152 (44%), Gaps = 5/152 (3%)
Query: 22 ICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDV 81
+ +VEP+ G + P +L +RALC ++ L I DEV TG R A Y V
Sbjct: 201 VACIIVEPVAGNXNCIPPLPEFLPGLRALCDEFGALLIIDEVXTGF-RVALAGAQDYYHV 259
Query: 82 RPDIVILGKALSGGLYPISAVLADDEVMGTLVPG---THGSTYGGNPLACKLAMTALDVI 138
PD+ LGK + GG P+ A EV L P T GNP+A L I
Sbjct: 260 IPDLTCLGKIIGGGX-PVGAFGGRREVXNALAPTGPVYQAGTLSGNPIAXAAGFACLTEI 318
Query: 139 LEENMIENAYKMGEIFRSELRSRLSPDIVPVV 170
+ + E ++ + + LR + +P+V
Sbjct: 319 SQVGVYETLTELTDSLATGLRHAAKEENIPLV 350
>pdb|3K28|A Chain A, Crystal Structure Of A Glutamate-1-Semialdehyde
Aminotransferase From Bacillus Anthracis With Bound
Pyridoxal 5'phosphate
pdb|3K28|B Chain B, Crystal Structure Of A Glutamate-1-Semialdehyde
Aminotransferase From Bacillus Anthracis With Bound
Pyridoxal 5'phosphate
pdb|3K28|C Chain C, Crystal Structure Of A Glutamate-1-Semialdehyde
Aminotransferase From Bacillus Anthracis With Bound
Pyridoxal 5'phosphate
pdb|3K28|D Chain D, Crystal Structure Of A Glutamate-1-Semialdehyde
Aminotransferase From Bacillus Anthracis With Bound
Pyridoxal 5'phosphate
Length = 429
Score = 65.1 bits (157), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 48/151 (31%), Positives = 65/151 (43%), Gaps = 6/151 (3%)
Query: 21 NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYED 80
+I +VEP+ G G V P G+L+ +R + Q L I DEV TG R Y
Sbjct: 200 DIACVIVEPVAGNXGVVPPQPGFLEGLREVTEQNGALLIFDEVXTGF-RVAYNCGQGYYG 258
Query: 81 VRPDIVILGKALSGGLYPISAVLADDEVMGTLVPG---THGSTYGGNPLACKLAMTALDV 137
V PD+ LGK + GGL P+ A E+ + P T GNPLA L
Sbjct: 259 VTPDLTCLGKVIGGGL-PVGAYGGKAEIXRQVAPSGPIYQAGTLSGNPLAXAAGYETLVQ 317
Query: 138 ILEENMIENAYKMGEIFRSELRSRLSPDIVP 168
+ E+ +E K E + LR +P
Sbjct: 318 LTPESYVEFERKA-EXLEAGLRKAAEKHGIP 347
>pdb|4A0G|A Chain A, Structure Of Bifunctional Dapa Aminotransferase-Dtb
Synthetase From Arabidopsis Thaliana In Its Apo Form.
pdb|4A0G|B Chain B, Structure Of Bifunctional Dapa Aminotransferase-Dtb
Synthetase From Arabidopsis Thaliana In Its Apo Form.
pdb|4A0G|C Chain C, Structure Of Bifunctional Dapa Aminotransferase-Dtb
Synthetase From Arabidopsis Thaliana In Its Apo Form.
pdb|4A0G|D Chain D, Structure Of Bifunctional Dapa Aminotransferase-Dtb
Synthetase From Arabidopsis Thaliana In Its Apo Form.
pdb|4A0H|A Chain A, Structure Of Bifunctional Dapa Aminotransferase-Dtb
Synthetase From Arabidopsis Thaliana Bound To 7-Keto
8-Amino Pelargonic Acid (Kapa)
pdb|4A0H|B Chain B, Structure Of Bifunctional Dapa Aminotransferase-Dtb
Synthetase From Arabidopsis Thaliana Bound To 7-Keto
8-Amino Pelargonic Acid (Kapa)
pdb|4A0R|A Chain A, Structure Of Bifunctional Dapa Aminotransferase-Dtb
Synthetase From Arabidopsis Thaliana Bound To
Dethiobiotin (Dtb).
pdb|4A0R|B Chain B, Structure Of Bifunctional Dapa Aminotransferase-Dtb
Synthetase From Arabidopsis Thaliana Bound To
Dethiobiotin (Dtb)
Length = 831
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 54/221 (24%), Positives = 94/221 (42%), Gaps = 19/221 (8%)
Query: 8 KSKQVPAKLKSNPNICAFMVEP-IQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTG 66
K Q + ++ + ++ A ++EP I G G + D + + + C + I DEV TG
Sbjct: 581 KHLQEHSGVRQSAHVGALIIEPVIHGAGGMHMVDPLFQRVLVNECRNRKIPVIFDEVFTG 640
Query: 67 LGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGT------HGST 120
R G +PDI K L+GG+ P++ LA D V + + HG +
Sbjct: 641 FWRLGVETTTELLGCKPDIACFAKLLTGGMVPLAVTLATDAVFDSFSGDSKLKALLHGHS 700
Query: 121 YGGNPLACKLAMTALDVILE----ENMIENAYKMGEIFRSELRSRLSP-DIVPVVRGKGL 175
Y + + C A A+ + N+ + E++ EL ++S V V G
Sbjct: 701 YSAHAMGCATAAKAIQWFKDPETNHNITSQGKTLRELWDEELVQQISSHSAVQRVVVIGT 760
Query: 176 LNAIVLDK-------SILEVYDVCIKMKDAGLVTKPISNNI 209
L A+ L + L + I +++ G+ T+P+ N I
Sbjct: 761 LFALELKADASNSGYASLYAKSLLIMLREDGIFTRPLGNVI 801
>pdb|3L44|A Chain A, Crystal Structure Of Bacillus Anthracis Heml-1, Glutamate
Semialdehyde Aminotransferase
pdb|3L44|B Chain B, Crystal Structure Of Bacillus Anthracis Heml-1, Glutamate
Semialdehyde Aminotransferase
Length = 434
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 54/185 (29%), Positives = 79/185 (42%), Gaps = 16/185 (8%)
Query: 17 KSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGL----GRTGK 72
K + A +VEPI G G V P G+L+KV L + L I DEV T G
Sbjct: 198 KWGHEVAAILVEPIVGNFGIVEPKPGFLEKVNELVHEAGALVIYDEVITAFRFXYGGAQD 257
Query: 73 LLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEV---MGTLVPGTHGSTYGGNPLACK 129
LL V PD+ LG + GGL PI A E+ + L P T GNP +
Sbjct: 258 LLG-----VTPDLTALGXVIGGGL-PIGAYGGKKEIXEQVAPLGPAYQAGTXAGNPASXA 311
Query: 130 LAMTALDVILEENMIENAYKMGEIFRSELRSRLSPDIVPVV--RGKGLLNAIVLDKSILE 187
+ L+V+ +E + E ++G + + + + + R KG L + + +E
Sbjct: 312 SGIACLEVLQQEGLYEKLDELGATLEKGILEQAAKHNIDITLNRLKGALT-VYFTTNTIE 370
Query: 188 VYDVC 192
YD
Sbjct: 371 DYDAA 375
>pdb|2EPJ|A Chain A, Crystal Structure Of Glutamate-1-Semialdehyde
2,1-Aminomutase From Aeropyrum Pernix
pdb|2ZSL|A Chain A, Crystal Structure Of Glutamate-1-Semialdehyde 2,1-
Aminomutase From Aeropyrum Pernix
pdb|2ZSM|A Chain A, Crystal Structure Of Glutamate-1-semialdehyde 2,1-
Aminomutase From Aeropyrum Pernix, Hexagonal Form
pdb|2ZSM|B Chain B, Crystal Structure Of Glutamate-1-semialdehyde 2,1-
Aminomutase From Aeropyrum Pernix, Hexagonal Form
pdb|2ZSM|C Chain C, Crystal Structure Of Glutamate-1-semialdehyde 2,1-
Aminomutase From Aeropyrum Pernix, Hexagonal Form
Length = 434
Score = 60.8 bits (146), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 60/124 (48%), Gaps = 5/124 (4%)
Query: 21 NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYED 80
I +VEP+ AG + P +L ++ L + L I DEV TG R G A Y +
Sbjct: 203 RIAGVIVEPVIANAGVIPPRREFLAALQRLSRESGALLILDEVVTGF-RLGLEGAQGYFN 261
Query: 81 VRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGT---HGSTYGGNPLACKLAMTALDV 137
+ DI++LGK + GG +P+ AV EVM L P + T+ +P+ + L
Sbjct: 262 IEGDIIVLGKIIGGG-FPVGAVAGSREVMSLLTPQGKVFNAGTFNAHPITMAAGLATLKA 320
Query: 138 ILEE 141
+ EE
Sbjct: 321 LEEE 324
>pdb|4A0F|A Chain A, Structure Of Selenomethionine Substituted Bifunctional
Dapa Aminotransferase-Dethiobiotin Synthetase From
Arabidopsis Thaliana In Its Apo Form.
pdb|4A0F|B Chain B, Structure Of Selenomethionine Substituted Bifunctional
Dapa Aminotransferase-Dethiobiotin Synthetase From
Arabidopsis Thaliana In Its Apo Form
Length = 831
Score = 59.3 bits (142), Expect = 2e-09, Method: Composition-based stats.
Identities = 55/221 (24%), Positives = 91/221 (41%), Gaps = 19/221 (8%)
Query: 8 KSKQVPAKLKSNPNICAFMVEP-IQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTG 66
K Q + ++ + ++ A ++EP I G G D + + + C + I DEV TG
Sbjct: 581 KHLQEHSGVRQSAHVGALIIEPVIHGAGGXHXVDPLFQRVLVNECRNRKIPVIFDEVFTG 640
Query: 67 LGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGT------HGST 120
R G +PDI K L+GG P++ LA D V + + HG +
Sbjct: 641 FWRLGVETTTELLGCKPDIACFAKLLTGGXVPLAVTLATDAVFDSFSGDSKLKALLHGHS 700
Query: 121 YGGNPLACKLAMTAL----DVILEENMIENAYKMGEIFRSELRSRLSP-DIVPVVRGKGL 175
Y + C A A+ D N+ + E++ EL ++S V V G
Sbjct: 701 YSAHAXGCATAAKAIQWFKDPETNHNITSQGKTLRELWDEELVQQISSHSAVQRVVVIGT 760
Query: 176 LNAIVLDK-------SILEVYDVCIKMKDAGLVTKPISNNI 209
L A+ L + L + I +++ G+ T+P+ N I
Sbjct: 761 LFALELKADASNSGYASLYAKSLLIXLREDGIFTRPLGNVI 801
>pdb|2CY8|A Chain A, Crystal Structure Of D-Phenylglycine Aminotransferase
(D-Phgat) From Pseudomonas Strutzeri St-201
Length = 453
Score = 58.5 bits (140), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 48/143 (33%), Positives = 71/143 (49%), Gaps = 7/143 (4%)
Query: 21 NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYED 80
+I AF+ EP+ G D +L++ L QY LFI DEV +G R G D
Sbjct: 201 DIAAFIAEPVGSHFGVTPVSDSFLREGAELARQYGALFILDEVISGF-RVGNHGMQALLD 259
Query: 81 VRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGT-----HGSTYGGNPLACKLAMTAL 135
V+PD+ L KA S G P + ++VMG L G+ H T+ GNP+ A+ A+
Sbjct: 260 VQPDLTCLAKA-SAGGLPGGILGGREDVMGVLSRGSDRKVLHQGTFTGNPITAAAAIAAI 318
Query: 136 DVILEENMIENAYKMGEIFRSEL 158
D ILE+++ +G+ R +
Sbjct: 319 DTILEDDVCAKINDLGQFAREAM 341
>pdb|4AO9|A Chain A, Biochemical Properties And Crystal Structure Of A Novel
Beta-phenylalanine Aminotransferase From Variovorax
Paradoxus
pdb|4AO9|B Chain B, Biochemical Properties And Crystal Structure Of A Novel
Beta-phenylalanine Aminotransferase From Variovorax
Paradoxus
pdb|4AOA|A Chain A, Biochemical Properties And Crystal Structure Of A Novel
Beta-phenylalanine Aminotransferase From Variovorax
Paradoxus
pdb|4AOA|B Chain B, Biochemical Properties And Crystal Structure Of A Novel
Beta-phenylalanine Aminotransferase From Variovorax
Paradoxus
Length = 454
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 60/152 (39%), Gaps = 15/152 (9%)
Query: 17 KSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGL----GRTGK 72
+ P I +VEP+QG +G + +L+ +R +Q L + DEV T G K
Sbjct: 216 RHGPEIAVVLVEPMQGASGCIPGQPDFLQALRESATQVGALLVFDEVMTSRLAPHGLANK 275
Query: 73 LLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGT----HGSTYGGNPLAC 128
L +R D+ LGK + GG+ A +VM P T H T+ N +
Sbjct: 276 L------GIRSDLTTLGKYIGGGM-SFGAFGGRADVMALFDPRTGPLAHSGTFNNNVMTM 328
Query: 129 KLAMTALDVILEENMIENAYKMGEIFRSELRS 160
L + + GE R+ L +
Sbjct: 329 AAGYAGLTKLFTPEAAGALAERGEALRARLNA 360
>pdb|2YKU|A Chain A, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|2YKU|B Chain B, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|2YKU|C Chain C, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|2YKV|A Chain A, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|2YKV|B Chain B, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|2YKV|C Chain C, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|2YKX|A Chain A, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|2YKX|B Chain B, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|2YKX|C Chain C, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|2YKY|A Chain A, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|2YKY|B Chain B, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|2YKY|C Chain C, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|4AO4|A Chain A, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|4AO4|B Chain B, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|4AO4|C Chain C, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
Length = 465
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/152 (28%), Positives = 62/152 (40%), Gaps = 15/152 (9%)
Query: 16 LKSNPNICA-FMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGL---GRTG 71
LK + + CA +VEP+ G G V + +L +RA S+ L I DEV T G
Sbjct: 227 LKRHGHDCAAILVEPMLGAGGCVPAERAFLDLLRAEASRCGALLIFDEVMTSRLSGGGAQ 286
Query: 72 KLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPG-----THGSTYGGNPL 126
++L I D+ LGK + GG+ A ++M P H T+ N L
Sbjct: 287 EMLGI-----SADLTTLGKYIGGGM-SFGAFGGRRDLMERFDPARDGAFAHAGTFNNNIL 340
Query: 127 ACKLAMTALDVILEENMIENAYKMGEIFRSEL 158
AL I + G+ FR+ L
Sbjct: 341 TMSAGHAALTQIYTRQAASDLSASGDRFRANL 372
>pdb|1S72|T Chain T, Refined Crystal Structure Of The Haloarcula Marismortui
Large Ribosomal Subunit At 2.4 Angstrom Resolution
pdb|1YHQ|T Chain T, Crystal Structure Of Azithromycin Bound To The G2099a
Mutant 50s Ribosomal Subunit Of Haloarcula Marismortui
pdb|1YI2|T Chain T, Crystal Structure Of Erythromycin Bound To The G2099a
Mutant 50s Ribosomal Subunit Of Haloarcula Marismortui
pdb|1YIJ|T Chain T, Crystal Structure Of Telithromycin Bound To The G2099a
Mutant 50s Ribosomal Subunit Of Haloarcula Marismortui
pdb|1YIT|T Chain T, Crystal Structure Of Virginiamycin M And S Bound To The
50s Ribosomal Subunit Of Haloarcula Marismortui
pdb|1YJ9|T Chain T, Crystal Structure Of The Mutant 50s Ribosomal Subunit Of
Haloarcula Marismortui Containing A Three Residue
Deletion In L22
pdb|1YJN|T Chain T, Crystal Structure Of Clindamycin Bound To The G2099a
Mutant 50s Ribosomal Subunit Of Haloarcula Marismortui
pdb|1YJW|T Chain T, Crystal Structure Of Quinupristin Bound To The G2099a
Mutant 50s Ribosomal Subunit Of Haloarcula Marismortui
pdb|1VQ4|T Chain T, The Structure Of The Transition State Analogue "daa" Bound
To The Large Ribosomal Subunit Of Haloarcula Marismortui
pdb|1VQ5|T Chain T, The Structure Of The Transition State Analogue "raa" Bound
To The Large Ribosomal Subunit Of Haloarcula Marismortui
pdb|1VQ6|T Chain T, The Structure Of C-Hpmn And Cca-Phe-Cap-Bio Bound To The
Large Ribosomal Subunit Of Haloarcula Marismortui
pdb|1VQ7|T Chain T, The Structure Of The Transition State Analogue "dca" Bound
To The Large Ribosomal Subunit Of Haloarcula Marismortui
pdb|1VQ8|T Chain T, The Structure Of Ccda-Phe-Cap-Bio And The Antibiotic
Sparsomycin Bound To The Large Ribosomal Subunit Of
Haloarcula Marismortui
pdb|1VQ9|T Chain T, The Structure Of Cca-Phe-Cap-Bio And The Antibiotic
Sparsomycin Bound To The Large Ribosomal Subunit Of
Haloarcula Marismortui
pdb|1VQK|T Chain T, The Structure Of Ccda-Phe-Cap-Bio Bound To The A Site Of
The Ribosomal Subunit Of Haloarcula Marismortui
pdb|1VQL|T Chain T, The Structure Of The Transition State Analogue "dcsn"
Bound To The Large Ribosomal Subunit Of Haloarcula
Marismortui
pdb|1VQM|T Chain T, The Structure Of The Transition State Analogue "dan" Bound
To The Large Ribosomal Subunit Of Haloarcula Marismortui
pdb|1VQN|T Chain T, The Structure Of Cc-hpmn And Cca-phe-cap-bio Bound To The
Large Ribosomal Subunit Of Haloarcula Marismortui
pdb|1VQO|T Chain T, The Structure Of Ccpmn Bound To The Large Ribosomal
Subunit Haloarcula Marismortui
pdb|1VQP|T Chain T, The Structure Of The Transition State Analogue "rap" Bound
To The Large Ribosomal Subunit Of Haloarcula Marismortui
pdb|2OTJ|T Chain T, 13-Deoxytedanolide Bound To The Large Subunit Of
Haloarcula Marismortui
pdb|2OTL|T Chain T, Girodazole Bound To The Large Subunit Of Haloarcula
Marismortui
pdb|2QA4|T Chain T, A More Complete Structure Of The The L7L12 STALK OF THE
Haloarcula Marismortui 50s Large Ribosomal Subunit
pdb|3CC2|T Chain T, The Refined Crystal Structure Of The Haloarcula
Marismortui Large Ribosomal Subunit At 2.4 Angstrom
Resolution With Rrna Sequence For The 23s Rrna And
Genome-Derived Sequences For R-Proteins
pdb|3CC4|T Chain T, Co-Crystal Structure Of Anisomycin Bound To The 50s
Ribosomal Subunit
pdb|3CC7|T Chain T, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
23s Rrna Mutation C2487u
pdb|3CCE|T Chain T, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
23s Rrna Mutation U2535a
pdb|3CCJ|T Chain T, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
23s Rrna Mutation C2534u
pdb|3CCL|T Chain T, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
23s Rrna Mutation U2535c. Density For Anisomycin Is
Visible But Not Included In Model.
pdb|3CCM|T Chain T, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
23s Rrna Mutation G2611u
pdb|3CCQ|T Chain T, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
23s Rrna Mutation A2488u
pdb|3CCR|T Chain T, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
23s Rrna Mutation A2488c. Density For Anisomycin Is
Visible But Not Included In The Model.
pdb|3CCS|T Chain T, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
23s Rrna Mutation G2482a
pdb|3CCU|T Chain T, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
23s Rrna Mutation G2482c
pdb|3CCV|T Chain T, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
23s Rrna Mutation G2616a
pdb|3CD6|T Chain T, Co-cystal Of Large Ribosomal Subunit Mutant G2616a With
Cc-puromycin
pdb|3CPW|S Chain S, The Structure Of The Antibiotic Linezolid Bound To The
Large Ribosomal Subunit Of Haloarcula Marismortui
pdb|3CMA|T Chain T, The Structure Of Cca And Cca-Phe-Cap-Bio Bound To The
Large Ribosomal Subunit Of Haloarcula Marismortui
pdb|3CME|T Chain T, The Structure Of Ca And Cca-Phe-Cap-Bio Bound To The Large
Ribosomal Subunit Of Haloarcula Marismortui
pdb|2QEX|T Chain T, Negamycin Binds To The Wall Of The Nascent Chain Exit
Tunnel Of The 50s Ribosomal Subunit
pdb|3I55|T Chain T, Co-Crystal Structure Of Mycalamide A Bound To The Large
Ribosomal Subunit
pdb|3I56|T Chain T, Co-Crystal Structure Of Triacetyloleandomcyin Bound To The
Large Ribosomal Subunit
pdb|4ADX|T Chain T, The Cryo-Em Structure Of The Archaeal 50s Ribosomal
Subunit In Complex With Initiation Factor 6
Length = 120
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 38/67 (56%), Gaps = 7/67 (10%)
Query: 165 DIVPVVRG-----KGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNIT 219
D V V+RG +G + + LDK+++ V DV ++ D V +P+ + +R++ L++
Sbjct: 47 DTVEVLRGDFAGEEGEVINVDLDKAVIHVEDVTLEKTDGEEVPRPLDTSNVRVTD-LDL- 104
Query: 220 EQELREG 226
E E RE
Sbjct: 105 EDEKREA 111
>pdb|1FFK|Q Chain Q, Crystal Structure Of The Large Ribosomal Subunit From
Haloarcula Marismortui At 2.4 Angstrom Resolution
pdb|1GIY|U Chain U, Crystal Structure Of The Ribosome At 5.5 A Resolution.
This File, 1giy, Contains The 50s Ribosome Subunit. The
30s Ribosome Subunit, Three Trna, And Mrna Molecules Are
In The File 1gix
pdb|1JJ2|S Chain S, Fully Refined Crystal Structure Of The Haloarcula
Marismortui Large Ribosomal Subunit At 2.4 Angstrom
Resolution
pdb|1KQS|S Chain S, The Haloarcula Marismortui 50s Complexed With A
Pretranslocational Intermediate In Protein Synthesis
pdb|1K8A|U Chain U, Co-Crystal Structure Of Carbomycin A Bound To The 50s
Ribosomal Subunit Of Haloarcula Marismortui
pdb|1K9M|U Chain U, Co-Crystal Structure Of Tylosin Bound To The 50s Ribosomal
Subunit Of Haloarcula Marismortui
pdb|1KD1|U Chain U, Co-crystal Structure Of Spiramycin Bound To The 50s
Ribosomal Subunit Of Haloarcula Marismortui
pdb|1M1K|U Chain U, Co-Crystal Structure Of Azithromycin Bound To The 50s
Ribosomal Subunit Of Haloarcula Marismortui
pdb|1M90|U Chain U, Co-Crystal Structure Of Cca-Phe-Caproic Acid-Biotin And
Sparsomycin Bound To The 50s Ribosomal Subunit
pdb|1ML5|UU Chain u, Structure Of The E. Coli Ribosomal Termination Complex
With Release Factor 2
pdb|1K73|U Chain U, Co-Crystal Structure Of Anisomycin Bound To The 50s
Ribosomal Subunit
pdb|1KC8|U Chain U, Co-Crystal Structure Of Blasticidin S Bound To The 50s
Ribosomal Subunit
pdb|1N8R|U Chain U, Structure Of Large Ribosomal Subunit In Complex With
Virginiamycin M
pdb|1NJI|U Chain U, Structure Of Chloramphenicol Bound To The 50s Ribosomal
Subunit
pdb|1Q7Y|U Chain U, Crystal Structure Of Ccdap-puromycin Bound At The Peptidyl
Transferase Center Of The 50s Ribosomal Subunit
pdb|1Q81|U Chain U, Crystal Structure Of Minihelix With 3' Puromycin Bound To
A- Site Of The 50s Ribosomal Subunit.
pdb|1Q82|U Chain U, Crystal Structure Of Cc-Puromycin Bound To The A-Site Of
The 50s Ribosomal Subunit
pdb|1Q86|U Chain U, Crystal Structure Of Cca-Phe-Cap-Biotin Bound
Simultaneously At Half Occupancy To Both The A-Site And
P- Site Of The The 50s Ribosomal Subunit.
pdb|1QVF|S Chain S, Structure Of A Deacylated Trna Minihelix Bound To The E
Site Of The Large Ribosomal Subunit Of Haloarcula
Marismortui
pdb|1QVG|S Chain S, Structure Of Cca Oligonucleotide Bound To The Trna Binding
Sites Of The Large Ribosomal Subunit Of Haloarcula
Marismortui
pdb|1W2B|S Chain S, Trigger Factor Ribosome Binding Domain In Complex With 50s
pdb|1YL3|U Chain U, Crystal Structure Of 70s Ribosome With Thrs Operator And
Trnas. Large Subunit. The Coordinates For The Small
Subunit Are In The Pdb Entry 1yl4.
pdb|2B66|Y Chain Y, 50s Ribosomal Subunit From A Crystal Structure Of Release
Factor Rf1, Trnas And Mrna Bound To The Ribosome. This
File Contains The 50s Subunit From A Crystal Structure
Of Release Factor Rf1, Trnas And Mrna Bound To The
Ribosome And Is Described In Remark 400
pdb|2B9N|Y Chain Y, 50s Ribosomal Subunit From A Crystal Structure Of Release
Factor Rf2, Trnas And Mrna Bound To The Ribosome. This
File Contains The 50s Subunit From A Crystal Structure
Of Release Factor Rf1, Trnas And Mrna Bound To The
Ribosome And Is Described In Remark 400.
pdb|2B9P|Y Chain Y, 50s Ribosomal Subunit From A Crystal Structure Of The
Ribosome In Complex With Trnas And Mrna With A Stop
Codon In The A-Site. This File Contains The 50s Subunit
From A Crystal Structure Of The Ribosome In Complex With
Trnas And Mrna With A Stop Codon In The A-Site And Is
Described In Remark 400.
pdb|3CXC|S Chain S, The Structure Of An Enhanced Oxazolidinone Inhibitor Bound
To The 50s Ribosomal Subunit Of H. Marismortui
pdb|3G4S|T Chain T, Co-Crystal Structure Of Tiamulin Bound To The Large
Ribosomal Subunit
pdb|3G6E|T Chain T, Co-Crystal Structure Of Homoharringtonine Bound To The
Large Ribosomal Subunit
pdb|3G71|T Chain T, Co-crystal Structure Of Bruceantin Bound To The Large
Ribosomal Subunit
pdb|3OW2|S Chain S, Crystal Structure Of Enhanced Macrolide Bound To 50s
Ribosomal Subunit
Length = 119
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 5/54 (9%)
Query: 165 DIVPVVRG-----KGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPISNNIIRLS 213
D V V+RG +G + + LDK+++ V DV ++ D V +P+ + +R++
Sbjct: 46 DTVEVLRGDFAGEEGEVINVDLDKAVIHVEDVTLEKTDGEEVPRPLDTSNVRVT 99
>pdb|3T32|A Chain A, Crystal Structure Of A Putative C-S Lyase From Bacillus
Anthracis
pdb|3T32|B Chain B, Crystal Structure Of A Putative C-S Lyase From Bacillus
Anthracis
Length = 383
Score = 29.3 bits (64), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 19/24 (79%)
Query: 44 LKKVRALCSQYNVLFIADEVQTGL 67
L K+ +LC++YNV+ +ADE+ + +
Sbjct: 178 LTKLGSLCTKYNVIVVADEIHSDI 201
>pdb|2HGC|A Chain A, Solution Nmr Structure Of The Yjcq Protein From Bacillus
Subtilis. Northeast Structural Genomics Target Sr346
Length = 102
Score = 28.5 bits (62), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 61 DEVQTGLGRTGKLLAIHYEDVRPDIVILGKALS 93
D+ L R G ++ +HY D RP + LG L+
Sbjct: 34 DDAVNFLKREGYIIGVHYSDDRPHLYKLGPELT 66
>pdb|3ZXX|A Chain A, Structure Of Self-cleaved Protease Domain Of Pata
Length = 307
Score = 27.3 bits (59), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 34/77 (44%), Gaps = 9/77 (11%)
Query: 41 DGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPI- 99
DG+L+ +LC Q NVL +A G +H P ++ +G A+ +P+
Sbjct: 142 DGWLENAVSLCRQNNVLLVAAAGNNGCD------CLHVPAALPAVLAVG-AMDDHGHPLD 194
Query: 100 -SAVLADDEVMGTLVPG 115
S + E G L PG
Sbjct: 195 FSNWGSTYEQQGILAPG 211
>pdb|4H6V|A Chain A, Structure Of Patellamide Maturation Protease Pata
Length = 306
Score = 27.3 bits (59), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 10/20 (50%), Positives = 14/20 (70%)
Query: 41 DGYLKKVRALCSQYNVLFIA 60
DG+L+ +LC Q NVL +A
Sbjct: 133 DGWLENAVSLCRQNNVLLVA 152
>pdb|3ZXY|A Chain A, Structure Of S218a Mutant Of The Protease Domain Of Pata
Length = 282
Score = 27.3 bits (59), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 10/20 (50%), Positives = 14/20 (70%)
Query: 41 DGYLKKVRALCSQYNVLFIA 60
DG+L+ +LC Q NVL +A
Sbjct: 123 DGWLENAVSLCRQNNVLLVA 142
>pdb|4AS2|A Chain A, Pseudomonas Aeruginosa Phosphorylcholine Phosphatase.
Monoclinic Form
pdb|4AS2|B Chain B, Pseudomonas Aeruginosa Phosphorylcholine Phosphatase.
Monoclinic Form
pdb|4AS2|C Chain C, Pseudomonas Aeruginosa Phosphorylcholine Phosphatase.
Monoclinic Form
pdb|4AS2|D Chain D, Pseudomonas Aeruginosa Phosphorylcholine Phosphatase.
Monoclinic Form
pdb|4AS3|A Chain A, Pseudomonas Aeruginosa Phosphorylcholine Phosphatase.
Orthorhombic Form
pdb|4AS3|B Chain B, Pseudomonas Aeruginosa Phosphorylcholine Phosphatase.
Orthorhombic Form
pdb|4AS3|C Chain C, Pseudomonas Aeruginosa Phosphorylcholine Phosphatase.
Orthorhombic Form
pdb|4AS3|D Chain D, Pseudomonas Aeruginosa Phosphorylcholine Phosphatase.
Orthorhombic Form
Length = 327
Score = 26.9 bits (58), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 28/55 (50%)
Query: 131 AMTALDVILEENMIENAYKMGEIFRSELRSRLSPDIVPVVRGKGLLNAIVLDKSI 185
A L+ ++E N + AY + ++ + R L ++P + KG+L LD S+
Sbjct: 10 AARQLNALIEANANKGAYAVFDMDNTSYRYDLEESLLPYLEMKGVLTRDRLDPSL 64
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.138 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,010,451
Number of Sequences: 62578
Number of extensions: 292441
Number of successful extensions: 1055
Number of sequences better than 100.0: 86
Number of HSP's better than 100.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 868
Number of HSP's gapped (non-prelim): 86
length of query: 242
length of database: 14,973,337
effective HSP length: 96
effective length of query: 146
effective length of database: 8,965,849
effective search space: 1309013954
effective search space used: 1309013954
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)