Query psy6548
Match_columns 242
No_of_seqs 118 out of 1070
Neff 10.0
Searched_HMMs 46136
Date Fri Aug 16 20:48:13 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6548.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/6548hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG4992 ArgD Ornithine/acetylo 100.0 1.1E-46 2.3E-51 307.9 24.4 235 3-240 165-402 (404)
2 COG0160 GabT 4-aminobutyrate a 100.0 3.4E-41 7.3E-46 283.0 23.8 216 19-237 220-446 (447)
3 KOG1402|consensus 100.0 1E-40 2.2E-45 262.7 21.0 231 4-235 188-426 (427)
4 PRK11522 putrescine--2-oxoglut 100.0 2.2E-39 4.7E-44 278.9 24.7 235 3-239 206-454 (459)
5 TIGR03372 putres_am_tran putre 100.0 3.1E-39 6.7E-44 276.2 23.1 229 4-234 200-442 (442)
6 TIGR03246 arg_catab_astC succi 100.0 1E-38 2.2E-43 271.9 25.4 232 4-237 161-396 (397)
7 PRK03244 argD acetylornithine 100.0 3.7E-38 8E-43 269.1 25.4 231 4-238 165-396 (398)
8 PRK12381 bifunctional succinyl 100.0 8.5E-38 1.8E-42 267.0 25.6 235 4-240 165-403 (406)
9 PLN02760 4-aminobutyrate:pyruv 100.0 6.6E-38 1.4E-42 272.1 24.1 218 19-238 258-493 (504)
10 PRK05965 hypothetical protein; 100.0 1.1E-37 2.4E-42 268.9 24.6 220 20-240 214-451 (459)
11 COG0161 BioA Adenosylmethionin 100.0 1.3E-37 2.9E-42 259.8 22.0 218 20-240 213-447 (449)
12 PLN00144 acetylornithine trans 100.0 4.4E-37 9.6E-42 260.2 25.2 230 4-237 148-381 (382)
13 PRK04073 rocD ornithine--oxo-a 100.0 4.8E-37 1E-41 261.9 25.4 227 4-234 168-395 (396)
14 PRK04612 argD acetylornithine 100.0 8.9E-37 1.9E-41 259.8 26.3 235 4-240 168-407 (408)
15 PRK06058 4-aminobutyrate amino 100.0 4.6E-37 9.9E-42 264.7 24.7 216 19-236 217-442 (443)
16 PRK01278 argD acetylornithine 100.0 6.4E-37 1.4E-41 260.7 25.2 227 5-236 158-388 (389)
17 PRK06938 diaminobutyrate--2-ox 100.0 3.9E-37 8.4E-42 265.5 23.6 217 20-239 230-463 (464)
18 PRK03715 argD acetylornithine 100.0 6.6E-37 1.4E-41 259.9 24.6 226 7-237 164-394 (395)
19 PRK07678 aminotransferase; Val 100.0 5.4E-37 1.2E-41 264.3 24.0 219 19-237 211-450 (451)
20 PRK07481 hypothetical protein; 100.0 5.1E-37 1.1E-41 264.3 23.6 218 19-238 211-447 (449)
21 PRK05093 argD bifunctional N-s 100.0 1.2E-36 2.7E-41 259.9 25.4 233 3-237 165-401 (403)
22 PRK07482 hypothetical protein; 100.0 1.1E-36 2.4E-41 262.8 24.8 219 19-238 218-456 (461)
23 PRK06062 hypothetical protein; 100.0 1E-36 2.3E-41 262.3 24.0 218 20-239 213-448 (451)
24 PRK07986 adenosylmethionine--8 100.0 9.2E-37 2E-41 260.7 22.4 226 8-236 187-423 (428)
25 PRK06943 adenosylmethionine--8 100.0 3.5E-36 7.6E-41 259.0 24.6 218 19-238 219-448 (453)
26 PLN02624 ornithine-delta-amino 100.0 4.1E-36 9E-41 260.3 25.2 232 4-236 203-444 (474)
27 PRK08117 4-aminobutyrate amino 100.0 1.5E-36 3.1E-41 261.4 22.2 219 19-239 205-432 (433)
28 PRK06105 aminotransferase; Pro 100.0 3.5E-36 7.6E-41 259.6 24.2 219 19-239 216-452 (460)
29 PRK07480 putative aminotransfe 100.0 5.1E-36 1.1E-40 258.2 25.1 219 19-239 217-451 (456)
30 PRK07483 hypothetical protein; 100.0 3.7E-36 8E-41 258.4 24.1 221 19-240 197-441 (443)
31 TIGR01885 Orn_aminotrans ornit 100.0 7.5E-36 1.6E-40 255.0 24.9 230 4-234 165-400 (401)
32 PRK06173 adenosylmethionine--8 100.0 6.2E-36 1.3E-40 255.8 24.1 217 19-238 204-427 (429)
33 PRK08742 adenosylmethionine--8 100.0 6.8E-36 1.5E-40 257.8 24.4 218 19-238 234-469 (472)
34 PRK05964 adenosylmethionine--8 100.0 5.8E-36 1.2E-40 256.9 23.8 232 4-237 173-423 (423)
35 PRK07036 hypothetical protein; 100.0 9.5E-36 2E-40 257.2 25.1 218 19-238 218-454 (466)
36 PRK07030 adenosylmethionine--8 100.0 7.6E-36 1.7E-40 257.6 24.2 217 19-237 212-447 (466)
37 TIGR02407 ectoine_ectB diamino 100.0 5.5E-36 1.2E-40 255.8 23.0 213 20-236 193-412 (412)
38 PRK02936 argD acetylornithine 100.0 1.2E-35 2.7E-40 251.9 24.7 226 4-234 149-377 (377)
39 PRK08593 4-aminobutyrate amino 100.0 9.9E-36 2.2E-40 256.0 24.2 220 19-240 205-433 (445)
40 PRK07495 4-aminobutyrate amino 100.0 1.8E-35 3.8E-40 253.1 25.5 219 19-239 196-424 (425)
41 PRK00854 rocD ornithine--oxo-a 100.0 1.7E-35 3.8E-40 252.9 25.4 232 3-235 168-400 (401)
42 PRK06931 diaminobutyrate--2-ox 100.0 1.1E-35 2.3E-40 256.4 24.2 216 20-238 224-456 (459)
43 PRK09264 diaminobutyrate--2-ox 100.0 9E-36 2E-40 255.5 23.5 217 20-240 197-420 (425)
44 TIGR00709 dat 2,4-diaminobutyr 100.0 1.3E-35 2.9E-40 255.4 24.5 216 20-238 205-437 (442)
45 PRK13360 omega amino acid--pyr 100.0 1.4E-35 3E-40 254.8 24.3 217 19-237 213-441 (442)
46 PRK05630 adenosylmethionine--8 100.0 7.2E-36 1.6E-40 255.1 22.3 215 19-236 198-420 (422)
47 PTZ00125 ornithine aminotransf 100.0 3.1E-35 6.6E-40 251.3 26.2 236 4-240 159-399 (400)
48 PRK06082 4-aminobutyrate amino 100.0 2E-35 4.4E-40 254.7 25.2 219 19-240 227-455 (459)
49 PRK04013 argD acetylornithine/ 100.0 2.6E-35 5.6E-40 246.7 23.6 218 4-238 144-362 (364)
50 PRK06917 hypothetical protein; 100.0 9.1E-36 2E-40 256.2 21.4 221 20-241 198-442 (447)
51 PRK09792 4-aminobutyrate trans 100.0 2.3E-35 5E-40 252.6 23.7 215 19-235 196-420 (421)
52 PRK05639 4-aminobutyrate amino 100.0 3.3E-35 7.2E-40 253.0 24.3 218 19-239 220-446 (457)
53 PRK12403 putative aminotransfe 100.0 3.8E-35 8.3E-40 253.2 24.6 219 19-239 220-455 (460)
54 PRK09221 beta alanine--pyruvat 100.0 3.4E-35 7.5E-40 252.5 23.8 216 20-237 217-444 (445)
55 PRK06916 adenosylmethionine--8 100.0 2.9E-35 6.4E-40 253.9 23.3 219 19-239 221-458 (460)
56 PRK08360 4-aminobutyrate amino 100.0 9E-35 1.9E-39 249.8 25.9 219 19-239 202-429 (443)
57 PRK06541 hypothetical protein; 100.0 1.1E-34 2.4E-39 250.2 25.6 219 19-238 219-457 (460)
58 PRK02627 acetylornithine amino 100.0 1.2E-34 2.7E-39 247.3 25.2 228 5-237 165-395 (396)
59 TIGR00700 GABAtrnsam 4-aminobu 100.0 9.3E-35 2E-39 249.2 24.0 215 19-235 195-419 (420)
60 PRK06777 4-aminobutyrate amino 100.0 1.2E-34 2.7E-39 248.1 24.6 215 19-235 196-420 (421)
61 COG0001 HemL Glutamate-1-semia 100.0 6.1E-35 1.3E-39 241.3 21.6 234 2-239 177-431 (432)
62 PRK05769 4-aminobutyrate amino 100.0 4.6E-34 1E-38 245.5 24.9 215 19-237 219-440 (441)
63 PRK06918 4-aminobutyrate amino 100.0 8.3E-34 1.8E-38 245.1 25.3 220 19-240 217-447 (451)
64 PRK06148 hypothetical protein; 100.0 6E-34 1.3E-38 264.7 25.4 217 19-237 782-1011(1013)
65 PRK04260 acetylornithine amino 100.0 1.3E-33 2.8E-38 239.3 24.7 223 7-233 150-374 (375)
66 PLN02482 glutamate-1-semialdeh 100.0 4.2E-34 9.1E-39 246.4 21.0 230 3-237 224-474 (474)
67 PRK07046 aminotransferase; Val 100.0 1.2E-33 2.6E-38 243.2 23.5 229 3-238 198-452 (453)
68 TIGR00508 bioA adenosylmethion 100.0 1.4E-33 2.9E-38 241.8 23.7 215 19-236 205-426 (427)
69 cd00610 OAT_like Acetyl ornith 100.0 1.7E-33 3.7E-38 241.5 23.8 230 3-234 158-413 (413)
70 PRK12389 glutamate-1-semialdeh 100.0 1.2E-33 2.7E-38 242.4 22.6 228 3-236 178-427 (428)
71 KOG1404|consensus 100.0 3E-34 6.5E-39 230.9 17.3 210 19-230 210-432 (442)
72 PRK06149 hypothetical protein; 100.0 1.4E-33 3E-38 262.2 24.2 216 19-236 742-970 (972)
73 PRK08297 L-lysine aminotransfe 100.0 1.1E-33 2.4E-38 243.1 21.0 212 19-237 223-442 (443)
74 PRK00615 glutamate-1-semialdeh 100.0 3.9E-33 8.4E-38 238.5 23.6 229 5-237 181-429 (433)
75 TIGR00713 hemL glutamate-1-sem 100.0 3.8E-33 8.1E-38 239.9 20.3 230 4-237 174-423 (423)
76 KOG1401|consensus 100.0 3.7E-33 8E-38 226.1 18.8 233 2-238 183-432 (433)
77 PLN02974 adenosylmethionine-8- 100.0 1.5E-32 3.3E-37 247.9 24.2 215 19-234 582-816 (817)
78 TIGR00699 GABAtrns_euk 4-amino 100.0 1.2E-32 2.6E-37 236.2 21.9 208 19-234 249-464 (464)
79 TIGR00707 argD acetylornithine 100.0 3.4E-32 7.3E-37 231.0 23.9 225 5-234 153-379 (379)
80 PRK00062 glutamate-1-semialdeh 100.0 1E-32 2.3E-37 236.8 20.4 229 4-237 176-425 (426)
81 PRK08088 4-aminobutyrate amino 100.0 6.4E-32 1.4E-36 232.1 24.3 217 19-237 197-424 (425)
82 TIGR03251 LAT_fam L-lysine 6-t 100.0 2.3E-31 4.9E-36 228.5 21.3 208 19-232 216-430 (431)
83 PF00202 Aminotran_3: Aminotra 100.0 2.2E-30 4.7E-35 216.0 14.6 164 18-183 174-339 (339)
84 PRK06209 glutamate-1-semialdeh 100.0 4.4E-28 9.5E-33 208.2 21.5 221 4-238 166-407 (431)
85 PLN02822 serine palmitoyltrans 100.0 1.3E-27 2.8E-32 207.5 19.6 227 3-239 216-480 (481)
86 COG0156 BioF 7-keto-8-aminopel 100.0 4.3E-27 9.3E-32 196.0 19.6 219 2-233 145-387 (388)
87 PLN02955 8-amino-7-oxononanoat 99.9 1.6E-26 3.4E-31 196.8 19.2 216 3-237 227-462 (476)
88 COG0436 Aspartate/tyrosine/aro 99.9 1.8E-26 3.9E-31 195.4 18.6 220 12-237 153-392 (393)
89 KOG1403|consensus 99.9 8.2E-27 1.8E-31 182.5 14.1 218 19-238 207-439 (452)
90 PLN03227 serine palmitoyltrans 99.9 8.6E-26 1.9E-30 192.0 21.4 226 4-238 106-384 (392)
91 PRK09064 5-aminolevulinate syn 99.9 5E-26 1.1E-30 195.0 20.1 222 3-237 155-398 (407)
92 TIGR01821 5aminolev_synth 5-am 99.9 1.3E-25 2.9E-30 192.0 20.2 221 4-237 155-397 (402)
93 KOG1405|consensus 99.9 6.1E-26 1.3E-30 181.0 16.6 209 19-236 269-483 (484)
94 PRK13393 5-aminolevulinate syn 99.9 3.6E-25 7.7E-30 189.6 21.2 221 4-237 155-397 (406)
95 PRK13392 5-aminolevulinate syn 99.9 7.2E-24 1.6E-28 181.7 20.3 221 4-237 156-398 (410)
96 PRK07682 hypothetical protein; 99.9 3.9E-24 8.4E-29 181.6 18.0 220 11-237 143-377 (378)
97 COG1168 MalY Bifunctional PLP- 99.9 2.8E-24 6E-29 173.8 16.1 218 15-237 152-387 (388)
98 PRK07179 hypothetical protein; 99.9 1.5E-23 3.2E-28 179.7 21.2 220 4-237 162-399 (407)
99 PRK07505 hypothetical protein; 99.9 6.7E-24 1.4E-28 181.5 17.1 217 3-236 160-399 (402)
100 PRK06225 aspartate aminotransf 99.9 2.3E-23 4.9E-28 177.0 18.7 222 11-239 146-379 (380)
101 PRK07324 transaminase; Validat 99.9 2.3E-23 5.1E-28 176.4 18.4 219 11-236 142-370 (373)
102 PLN00175 aminotransferase fami 99.9 2.7E-23 5.9E-28 178.1 18.8 214 15-235 181-412 (413)
103 PRK07681 aspartate aminotransf 99.9 3.4E-23 7.3E-28 177.0 19.1 206 19-232 164-384 (399)
104 PRK06108 aspartate aminotransf 99.9 3.3E-23 7.1E-28 176.1 18.7 217 12-235 148-381 (382)
105 PRK06425 histidinol-phosphate 99.9 2.5E-23 5.4E-28 173.7 17.6 216 4-234 103-331 (332)
106 PRK06207 aspartate aminotransf 99.9 4.6E-23 9.9E-28 176.4 19.6 222 11-238 167-404 (405)
107 COG0079 HisC Histidinol-phosph 99.9 2.7E-23 5.9E-28 173.4 17.1 217 4-236 123-354 (356)
108 PRK05957 aspartate aminotransf 99.9 7E-23 1.5E-27 174.5 19.9 224 12-240 150-389 (389)
109 PLN02483 serine palmitoyltrans 99.9 1E-22 2.3E-27 177.3 21.0 223 3-237 208-467 (489)
110 PRK06348 aspartate aminotransf 99.9 4.7E-23 1E-27 175.3 18.2 216 12-233 152-382 (384)
111 TIGR01822 2am3keto_CoA 2-amino 99.9 1.7E-22 3.8E-27 172.3 20.6 222 4-237 146-390 (393)
112 KOG1360|consensus 99.9 1E-22 2.2E-27 165.0 17.5 222 3-237 280-525 (570)
113 KOG1359|consensus 99.9 1.8E-22 3.9E-27 157.7 16.9 209 17-237 189-413 (417)
114 PRK08068 transaminase; Reviewe 99.9 1.6E-22 3.6E-27 172.3 18.4 206 19-232 165-385 (389)
115 PRK08153 histidinol-phosphate 99.9 2.6E-22 5.5E-27 169.9 18.2 210 16-239 150-368 (369)
116 PRK05958 8-amino-7-oxononanoat 99.9 6.6E-22 1.4E-26 168.2 20.6 220 3-234 146-385 (385)
117 TIGR03537 DapC succinyldiamino 99.9 2E-22 4.3E-27 169.4 17.1 213 11-232 125-349 (350)
118 PRK07366 succinyldiaminopimela 99.9 2.8E-22 6.1E-27 170.8 18.0 208 19-233 163-387 (388)
119 PRK06290 aspartate aminotransf 99.9 1.9E-22 4E-27 172.7 16.8 222 11-237 168-406 (410)
120 PRK03317 histidinol-phosphate 99.9 2.3E-22 5E-27 170.2 17.2 205 15-236 154-364 (368)
121 PRK09082 methionine aminotrans 99.9 2.3E-22 5E-27 171.2 17.2 215 11-232 152-385 (386)
122 PRK06939 2-amino-3-ketobutyrat 99.9 8.6E-22 1.9E-26 168.2 20.7 222 4-237 150-394 (397)
123 PRK09276 LL-diaminopimelate am 99.9 3.2E-22 7E-27 170.3 17.8 206 19-232 164-384 (385)
124 PRK15481 transcriptional regul 99.9 3.6E-22 7.7E-27 172.3 17.9 206 19-235 209-430 (431)
125 TIGR01825 gly_Cac_T_rel pyrido 99.9 1.1E-21 2.3E-26 167.0 20.6 219 6-237 143-382 (385)
126 TIGR03540 DapC_direct LL-diami 99.9 4.7E-22 1E-26 169.1 17.9 206 19-232 162-382 (383)
127 PRK08960 hypothetical protein; 99.9 1.2E-21 2.6E-26 166.9 19.7 210 18-235 162-386 (387)
128 PLN00143 tyrosine/nicotianamin 99.9 1.8E-21 3.9E-26 166.8 20.6 224 11-240 159-408 (409)
129 TIGR00858 bioF 8-amino-7-oxono 99.9 1.3E-21 2.7E-26 164.9 19.1 215 4-231 124-360 (360)
130 PLN02187 rooty/superroot1 99.9 1.1E-21 2.4E-26 170.0 19.0 224 12-240 194-442 (462)
131 COG1167 ARO8 Transcriptional r 99.9 1.1E-21 2.5E-26 169.6 18.7 220 15-238 220-457 (459)
132 PRK12414 putative aminotransfe 99.9 8.4E-22 1.8E-26 167.6 17.5 211 15-232 156-383 (384)
133 PRK07683 aminotransferase A; V 99.9 1.9E-21 4.2E-26 165.5 19.4 211 19-236 159-383 (387)
134 PRK01533 histidinol-phosphate 99.9 4.2E-22 9.1E-27 168.2 15.1 212 12-240 141-359 (366)
135 PRK09147 succinyldiaminopimela 99.9 1.1E-21 2.4E-26 167.6 17.8 206 19-235 164-395 (396)
136 PRK05942 aspartate aminotransf 99.9 1.6E-21 3.6E-26 166.4 18.6 213 12-232 160-388 (394)
137 PRK07309 aromatic amino acid a 99.9 2E-21 4.3E-26 165.7 18.9 211 20-238 165-390 (391)
138 PRK07568 aspartate aminotransf 99.9 2.6E-21 5.7E-26 165.3 19.4 220 12-240 152-396 (397)
139 PRK09148 aminotransferase; Val 99.9 2.7E-21 5.9E-26 165.5 19.4 213 19-238 163-392 (405)
140 PRK08912 hypothetical protein; 99.9 1.5E-21 3.3E-26 166.2 17.5 215 15-236 153-386 (387)
141 TIGR02539 SepCysS Sep-tRNA:Cys 99.9 2.8E-21 6E-26 163.6 18.6 221 3-236 113-368 (370)
142 PRK07777 aminotransferase; Val 99.9 2.3E-21 5.1E-26 165.1 18.2 217 11-234 148-384 (387)
143 PRK07590 L,L-diaminopimelate a 99.9 3.6E-21 7.7E-26 165.0 19.4 207 19-233 174-408 (409)
144 PRK02610 histidinol-phosphate 99.9 1.6E-21 3.4E-26 165.4 16.9 201 20-237 167-372 (374)
145 PRK08361 aspartate aminotransf 99.9 1.8E-21 4E-26 165.9 17.3 219 12-236 156-390 (391)
146 PRK08636 aspartate aminotransf 99.9 3.1E-21 6.8E-26 165.1 18.7 211 20-237 174-401 (403)
147 PRK06959 putative threonine-ph 99.9 4.1E-21 8.8E-26 160.7 18.9 200 22-239 131-336 (339)
148 PRK05937 8-amino-7-oxononanoat 99.9 7.1E-21 1.5E-25 161.1 20.5 213 4-237 119-351 (370)
149 PRK02731 histidinol-phosphate 99.9 2.7E-21 5.9E-26 163.6 17.7 212 11-235 143-365 (367)
150 TIGR03539 DapC_actino succinyl 99.9 3.3E-21 7.1E-26 162.5 18.1 202 19-230 140-356 (357)
151 PLN02656 tyrosine transaminase 99.9 5.1E-21 1.1E-25 164.1 19.1 222 12-239 159-406 (409)
152 PRK07865 N-succinyldiaminopime 99.9 4.5E-21 9.8E-26 162.1 18.4 202 20-231 147-363 (364)
153 PRK05664 threonine-phosphate d 99.9 8E-21 1.7E-25 158.4 19.3 199 21-236 124-328 (330)
154 PRK00950 histidinol-phosphate 99.9 2.6E-21 5.6E-26 163.4 16.5 198 19-234 156-360 (361)
155 PF00155 Aminotran_1_2: Aminot 99.9 7.5E-22 1.6E-26 166.7 13.2 212 9-230 129-363 (363)
156 PRK07337 aminotransferase; Val 99.9 6.9E-21 1.5E-25 162.2 19.2 212 15-234 157-387 (388)
157 PRK04781 histidinol-phosphate 99.9 4.5E-21 9.8E-26 162.0 17.7 203 16-234 147-361 (364)
158 TIGR01264 tyr_amTase_E tyrosin 99.9 8.6E-21 1.9E-25 162.3 19.7 211 19-237 166-400 (401)
159 PRK03321 putative aminotransfe 99.9 2.7E-21 5.8E-26 162.7 16.2 210 11-235 134-350 (352)
160 PRK08056 threonine-phosphate d 99.9 6.6E-21 1.4E-25 160.6 18.6 202 19-235 140-354 (356)
161 PRK08175 aminotransferase; Val 99.9 8.1E-21 1.8E-25 162.2 19.2 211 20-237 163-390 (395)
162 TIGR03542 DAPAT_plant LL-diami 99.9 9E-21 1.9E-25 162.2 19.4 206 20-233 172-401 (402)
163 PRK09440 avtA valine--pyruvate 99.9 5.9E-21 1.3E-25 164.1 18.3 216 19-239 177-414 (416)
164 PRK08363 alanine aminotransfer 99.9 9E-21 2E-25 162.0 19.1 216 16-237 161-395 (398)
165 PRK05839 hypothetical protein; 99.9 9.4E-21 2E-25 160.6 18.9 200 20-235 154-373 (374)
166 PLN00145 tyrosine/nicotianamin 99.9 1.7E-20 3.7E-25 161.5 20.5 225 11-241 179-429 (430)
167 PRK07550 hypothetical protein; 99.9 7.3E-21 1.6E-25 162.0 17.8 217 11-233 152-384 (386)
168 PRK06358 threonine-phosphate d 99.9 1.4E-20 3E-25 158.4 19.1 202 19-234 139-353 (354)
169 PRK05764 aspartate aminotransf 99.9 1.5E-20 3.2E-25 160.5 19.4 213 19-237 162-392 (393)
170 PRK06107 aspartate aminotransf 99.9 9.1E-21 2E-25 162.2 18.2 213 19-237 164-401 (402)
171 PTZ00433 tyrosine aminotransfe 99.9 2.5E-20 5.4E-25 160.0 20.6 213 19-238 175-410 (412)
172 cd00609 AAT_like Aspartate ami 99.9 1.1E-20 2.3E-25 158.3 17.9 210 15-231 126-349 (350)
173 PRK03158 histidinol-phosphate 99.9 4.4E-21 9.5E-26 161.9 15.6 208 11-233 140-358 (359)
174 COG0520 csdA Selenocysteine ly 99.9 4.4E-20 9.4E-25 156.6 21.0 208 15-235 156-404 (405)
175 TIGR03538 DapC_gpp succinyldia 99.9 8.6E-21 1.9E-25 161.9 16.5 204 19-233 163-392 (393)
176 TIGR03392 FeS_syn_CsdA cystein 99.9 6.3E-20 1.4E-24 156.9 21.7 212 11-237 146-396 (398)
177 TIGR01140 L_thr_O3P_dcar L-thr 99.9 1.3E-20 2.9E-25 157.2 17.1 203 11-230 115-329 (330)
178 PLN03026 histidinol-phosphate 99.9 1.9E-20 4E-25 159.0 17.2 201 15-232 169-378 (380)
179 TIGR03576 pyridox_MJ0158 pyrid 99.9 3.8E-20 8.3E-25 154.8 18.4 210 7-234 123-345 (346)
180 PRK01688 histidinol-phosphate 99.9 1.1E-20 2.4E-25 158.8 14.7 195 20-230 144-350 (351)
181 TIGR01265 tyr_nico_aTase tyros 99.9 7E-20 1.5E-24 156.8 19.6 219 12-237 159-402 (403)
182 PRK13355 bifunctional HTH-doma 99.9 5.7E-20 1.2E-24 161.8 19.4 218 11-237 270-515 (517)
183 KOG0257|consensus 99.9 3E-21 6.5E-26 157.8 10.2 209 15-231 166-414 (420)
184 PLN02721 threonine aldolase 99.9 4.8E-20 1E-24 155.1 17.2 210 20-236 136-352 (353)
185 PRK09265 aminotransferase AlaT 99.8 9.2E-20 2E-24 156.1 19.1 219 12-237 158-402 (404)
186 PTZ00377 alanine aminotransfer 99.8 5.8E-20 1.3E-24 160.5 18.1 213 21-240 218-479 (481)
187 TIGR01141 hisC histidinol-phos 99.8 3.6E-20 7.8E-25 155.5 15.9 204 11-230 131-345 (346)
188 PLN02376 1-aminocyclopropane-1 99.8 1.7E-19 3.6E-24 157.5 20.2 210 20-237 198-439 (496)
189 PRK10874 cysteine sulfinate de 99.8 3.8E-19 8.3E-24 152.2 21.6 212 11-237 149-399 (401)
190 PRK09295 bifunctional cysteine 99.8 3.7E-19 8E-24 152.5 21.4 211 11-235 153-403 (406)
191 PRK14809 histidinol-phosphate 99.8 5.2E-20 1.1E-24 155.2 15.7 194 21-235 154-356 (357)
192 PLN02450 1-aminocyclopropane-1 99.8 1.5E-19 3.3E-24 157.0 19.0 211 20-238 190-432 (468)
193 PRK06855 aminotransferase; Val 99.8 1.5E-19 3.2E-24 155.9 18.7 222 11-238 158-431 (433)
194 PRK14807 histidinol-phosphate 99.8 1E-19 2.3E-24 153.0 17.3 200 15-234 142-350 (351)
195 cd06451 AGAT_like Alanine-glyo 99.8 2.9E-19 6.2E-24 150.6 19.9 214 10-235 111-356 (356)
196 cd06454 KBL_like KBL_like; thi 99.8 2.7E-19 5.9E-24 150.2 19.6 218 5-233 110-348 (349)
197 PRK09105 putative aminotransfe 99.8 1.5E-19 3.3E-24 152.9 17.9 198 19-234 163-368 (370)
198 PRK14808 histidinol-phosphate 99.8 9.6E-20 2.1E-24 152.2 16.5 194 21-232 138-333 (335)
199 PRK09275 aspartate aminotransf 99.8 1.2E-19 2.6E-24 157.8 17.6 214 15-239 235-520 (527)
200 cd00613 GDC-P Glycine cleavage 99.8 2.7E-19 5.8E-24 152.9 19.4 215 4-230 136-398 (398)
201 PLN02607 1-aminocyclopropane-1 99.8 3.8E-19 8.3E-24 153.5 20.4 211 20-239 199-440 (447)
202 PTZ00376 aspartate aminotransf 99.8 9.2E-20 2E-24 156.1 15.0 203 20-236 175-403 (404)
203 TIGR03801 asp_4_decarbox aspar 99.8 2.2E-19 4.7E-24 156.0 17.4 219 15-239 234-519 (521)
204 PRK06836 aspartate aminotransf 99.8 5E-19 1.1E-23 151.1 19.2 214 12-238 158-393 (394)
205 TIGR03301 PhnW-AepZ 2-aminoeth 99.8 7.8E-19 1.7E-23 147.7 19.9 212 11-233 112-354 (355)
206 PRK05387 histidinol-phosphate 99.8 2.3E-19 4.9E-24 151.1 16.3 199 21-235 144-352 (353)
207 PRK04870 histidinol-phosphate 99.8 1.6E-19 3.4E-24 152.2 15.1 198 15-233 147-355 (356)
208 PRK08637 hypothetical protein; 99.8 4.6E-19 1E-23 151.0 17.3 209 20-237 145-387 (388)
209 PRK05166 histidinol-phosphate 99.8 3.8E-19 8.2E-24 150.7 16.7 208 12-234 149-369 (371)
210 PLN02231 alanine transaminase 99.8 5.4E-19 1.2E-23 155.3 17.7 213 21-240 271-531 (534)
211 TIGR01979 sufS cysteine desulf 99.8 2.2E-18 4.8E-23 147.6 21.0 213 11-237 148-402 (403)
212 TIGR01976 am_tr_V_VC1184 cyste 99.8 1.2E-18 2.7E-23 148.8 19.1 205 11-230 145-397 (397)
213 PLN02855 Bifunctional selenocy 99.8 2.2E-18 4.8E-23 148.5 20.7 216 11-240 162-422 (424)
214 PRK04635 histidinol-phosphate 99.8 3E-19 6.6E-24 150.4 14.9 195 20-232 146-351 (354)
215 cd06453 SufS_like Cysteine des 99.8 3.1E-18 6.6E-23 145.2 20.6 206 11-230 128-373 (373)
216 TIGR02326 transamin_PhnW 2-ami 99.8 4.5E-18 9.8E-23 143.7 21.2 214 11-235 116-361 (363)
217 PRK07908 hypothetical protein; 99.8 2E-18 4.2E-23 145.2 17.9 197 19-235 137-346 (349)
218 TIGR01814 kynureninase kynuren 99.8 5.3E-18 1.2E-22 145.3 20.1 201 19-234 169-405 (406)
219 PLN02397 aspartate transaminas 99.8 1.4E-18 3.1E-23 149.4 16.3 203 19-235 192-420 (423)
220 PRK07392 threonine-phosphate d 99.8 2.8E-18 6E-23 144.9 17.6 199 20-235 147-358 (360)
221 cd06502 TA_like Low-specificit 99.8 8E-19 1.7E-23 146.8 13.9 201 21-232 127-337 (338)
222 TIGR03402 FeS_nifS cysteine de 99.8 1.2E-17 2.7E-22 141.9 21.2 212 11-238 125-374 (379)
223 PRK02948 cysteine desulfurase; 99.8 1.2E-17 2.7E-22 142.0 19.5 216 10-239 126-377 (381)
224 PRK08354 putative aminotransfe 99.8 1E-17 2.2E-22 138.7 18.2 184 22-233 118-309 (311)
225 PLN02672 methionine S-methyltr 99.8 1E-17 2.2E-22 154.6 19.8 207 22-235 830-1079(1082)
226 PRK10534 L-threonine aldolase; 99.8 3.7E-18 8E-23 142.6 14.9 197 21-235 129-332 (333)
227 TIGR03403 nifS_epsilon cystein 99.8 3.2E-17 6.9E-22 139.5 20.7 213 11-239 129-378 (382)
228 PRK09257 aromatic amino acid a 99.8 4E-18 8.7E-23 145.7 14.9 201 20-233 171-395 (396)
229 PRK13520 L-tyrosine decarboxyl 99.8 2.2E-17 4.7E-22 139.9 19.1 211 11-235 140-370 (371)
230 PLN02409 serine--glyoxylate am 99.8 3.1E-17 6.6E-22 140.3 20.1 207 20-238 136-374 (401)
231 PRK09331 Sep-tRNA:Cys-tRNA syn 99.8 1.8E-17 4E-22 141.1 18.3 207 20-237 157-382 (387)
232 KOG0634|consensus 99.8 4.6E-17 1E-21 133.7 19.5 216 20-238 202-468 (472)
233 PRK13479 2-aminoethylphosphona 99.8 9.2E-17 2E-21 136.0 22.3 216 11-237 118-364 (368)
234 PRK03967 histidinol-phosphate 99.8 8.3E-18 1.8E-22 140.7 14.8 188 20-236 139-334 (337)
235 PRK13580 serine hydroxymethylt 99.8 2.1E-16 4.6E-21 135.3 20.9 211 15-237 213-446 (493)
236 TIGR01977 am_tr_V_EF2568 cyste 99.8 2.1E-16 4.5E-21 134.2 20.8 209 11-232 126-375 (376)
237 PRK13034 serine hydroxymethylt 99.8 2.2E-16 4.8E-21 135.4 20.7 214 10-236 155-392 (416)
238 KOG0259|consensus 99.7 2E-16 4.3E-21 128.1 18.0 219 11-238 188-435 (447)
239 PF00266 Aminotran_5: Aminotra 99.7 1.1E-16 2.5E-21 135.6 17.7 202 11-226 128-371 (371)
240 cd00378 SHMT Serine-glycine hy 99.7 1.4E-16 2.9E-21 136.5 18.3 213 11-236 149-385 (402)
241 KOG1368|consensus 99.7 2.2E-17 4.8E-22 129.6 10.6 210 19-234 152-366 (384)
242 TIGR03812 tyr_de_CO2_Arch tyro 99.7 2.7E-16 5.8E-21 133.3 17.9 209 11-232 142-372 (373)
243 COG3977 Alanine-alpha-ketoisov 99.7 6E-16 1.3E-20 121.8 18.3 216 18-239 176-414 (417)
244 PTZ00094 serine hydroxymethylt 99.7 2.9E-16 6.2E-21 136.2 17.9 213 11-236 170-408 (452)
245 TIGR02006 IscS cysteine desulf 99.7 1.4E-15 2.9E-20 130.3 21.5 211 11-237 131-378 (402)
246 COG1104 NifS Cysteine sulfinat 99.7 7E-16 1.5E-20 127.4 18.8 213 11-239 130-380 (386)
247 KOG1357|consensus 99.7 5.2E-17 1.1E-21 133.9 11.1 221 3-235 244-501 (519)
248 PLN02242 methionine gamma-lyas 99.7 1.9E-16 4.2E-21 135.5 14.6 215 5-238 145-417 (418)
249 PRK06460 hypothetical protein; 99.7 4E-16 8.7E-21 132.1 16.1 216 4-237 112-375 (376)
250 KOG1358|consensus 99.7 5.9E-16 1.3E-20 125.7 15.8 226 2-237 200-466 (467)
251 PRK00011 glyA serine hydroxyme 99.7 1.5E-15 3.2E-20 130.7 18.6 213 11-236 153-389 (416)
252 cd06452 SepCysS Sep-tRNA:Cys-t 99.7 6.8E-16 1.5E-20 130.4 16.2 203 20-234 138-360 (361)
253 cd00614 CGS_like CGS_like: Cys 99.7 3.5E-16 7.6E-21 132.4 12.6 214 4-234 107-368 (369)
254 PLN02651 cysteine desulfurase 99.7 1.9E-15 4.1E-20 127.8 16.8 198 11-224 127-364 (364)
255 PRK03080 phosphoserine aminotr 99.7 1E-14 2.2E-19 123.9 19.4 203 22-239 137-376 (378)
256 PLN03226 serine hydroxymethylt 99.7 1.2E-14 2.7E-19 126.0 20.2 216 6-236 160-419 (475)
257 KOG0633|consensus 99.7 2E-15 4.3E-20 116.7 13.2 207 15-233 153-374 (375)
258 PRK13238 tnaA tryptophanase/L- 99.7 3E-14 6.4E-19 123.4 21.5 212 20-236 176-433 (460)
259 cd06450 DOPA_deC_like DOPA dec 99.7 2E-15 4.4E-20 126.6 13.6 183 21-232 148-344 (345)
260 PLN02368 alanine transaminase 99.6 5.5E-16 1.2E-20 132.4 9.6 159 21-184 210-398 (407)
261 PRK00451 glycine dehydrogenase 99.6 3E-14 6.6E-19 123.7 20.6 211 4-234 182-446 (447)
262 COG0075 Serine-pyruvate aminot 99.6 8.6E-14 1.9E-18 115.8 21.8 223 4-238 108-365 (383)
263 PRK06767 methionine gamma-lyas 99.6 5.7E-15 1.2E-19 125.6 15.2 211 8-236 132-385 (386)
264 PRK06234 methionine gamma-lyas 99.6 6.8E-15 1.5E-19 125.6 15.1 216 4-237 131-398 (400)
265 PRK08249 cystathionine gamma-s 99.6 1.3E-14 2.8E-19 123.7 16.6 216 5-238 132-395 (398)
266 PRK08247 cystathionine gamma-s 99.6 4.5E-15 9.7E-20 125.5 13.4 213 4-236 118-364 (366)
267 PRK07504 O-succinylhomoserine 99.6 9.4E-15 2E-19 124.7 14.8 215 6-238 134-397 (398)
268 PRK14012 cysteine desulfurase; 99.6 1.1E-13 2.5E-18 118.6 21.1 210 11-238 133-381 (404)
269 TIGR01325 O_suc_HS_sulf O-succ 99.6 7E-15 1.5E-19 124.8 13.5 211 4-233 121-379 (380)
270 TIGR01437 selA_rel uncharacter 99.6 7.1E-14 1.5E-18 118.0 18.9 208 11-233 137-362 (363)
271 TIGR01366 serC_3 phosphoserine 99.6 9E-14 2E-18 117.3 19.0 204 17-237 124-361 (361)
272 PRK07049 methionine gamma-lyas 99.6 1.1E-14 2.3E-19 125.2 13.5 202 19-235 172-425 (427)
273 PRK08133 O-succinylhomoserine 99.6 1.4E-14 3.1E-19 123.3 13.8 214 4-235 128-389 (390)
274 PRK04366 glycine dehydrogenase 99.6 2.7E-13 5.9E-18 118.4 21.8 217 11-239 197-451 (481)
275 PRK07810 O-succinylhomoserine 99.6 2.1E-14 4.5E-19 122.6 14.3 213 4-234 137-402 (403)
276 cd00616 AHBA_syn 3-amino-5-hyd 99.6 8.6E-14 1.9E-18 117.1 17.6 205 11-231 95-352 (352)
277 TIGR01328 met_gam_lyase methio 99.6 3.6E-14 7.8E-19 120.8 14.8 214 5-236 127-390 (391)
278 PRK08776 cystathionine gamma-s 99.6 7E-14 1.5E-18 119.4 16.0 178 5-196 128-327 (405)
279 PRK07503 methionine gamma-lyas 99.6 1.1E-13 2.5E-18 118.2 16.1 216 5-237 133-397 (403)
280 TIGR01364 serC_1 phosphoserine 99.6 5.2E-13 1.1E-17 112.0 19.6 210 7-236 114-348 (349)
281 PRK08045 cystathionine gamma-s 99.6 1.8E-13 3.8E-18 116.3 16.5 212 8-237 123-383 (386)
282 KOG0256|consensus 99.6 6.6E-13 1.4E-17 108.8 18.7 208 19-236 224-461 (471)
283 TIGR02080 O_succ_thio_ly O-suc 99.6 1.7E-13 3.7E-18 116.3 15.8 210 8-235 122-380 (382)
284 PRK07811 cystathionine gamma-s 99.6 1.3E-13 2.7E-18 117.4 14.6 213 6-235 130-387 (388)
285 TIGR01324 cysta_beta_ly_B cyst 99.5 1.7E-13 3.6E-18 116.0 14.9 212 7-236 120-376 (377)
286 PRK05355 3-phosphoserine/phosp 99.5 9.7E-13 2.1E-17 110.9 19.4 198 19-236 139-358 (360)
287 cd00617 Tnase_like Tryptophana 99.5 2.4E-13 5.3E-18 116.4 15.6 211 21-236 152-408 (431)
288 PRK07269 cystathionine gamma-s 99.5 9.8E-14 2.1E-18 117.0 13.0 207 11-235 125-363 (364)
289 PLN02414 glycine dehydrogenase 99.5 2.4E-12 5.3E-17 119.0 22.2 219 11-239 652-910 (993)
290 PRK08861 cystathionine gamma-s 99.5 2.8E-13 6E-18 114.9 14.7 214 7-238 123-385 (388)
291 PRK07582 cystathionine gamma-l 99.5 3.2E-13 7E-18 114.1 14.9 194 20-231 131-364 (366)
292 TIGR01329 cysta_beta_ly_E cyst 99.5 2.6E-13 5.7E-18 115.1 14.2 215 4-236 113-375 (378)
293 PRK05968 hypothetical protein; 99.5 2.3E-13 5E-18 115.9 13.8 213 5-236 131-386 (389)
294 PLN02509 cystathionine beta-ly 99.5 4.3E-13 9.3E-18 115.8 15.1 214 4-235 199-460 (464)
295 PRK09028 cystathionine beta-ly 99.5 4.7E-13 1E-17 113.6 14.2 214 7-238 131-389 (394)
296 PRK06084 O-acetylhomoserine am 99.5 4.5E-13 9.8E-18 115.1 13.9 215 5-237 126-423 (425)
297 PRK08574 cystathionine gamma-s 99.5 5.4E-13 1.2E-17 113.4 14.1 208 11-236 125-384 (385)
298 KOG2862|consensus 99.5 3.2E-12 6.9E-17 101.4 16.2 211 15-236 136-382 (385)
299 PRK08064 cystathionine beta-ly 99.5 1E-12 2.2E-17 112.0 14.3 213 4-233 120-383 (390)
300 TIGR03235 DNA_S_dndA cysteine 99.5 7.9E-13 1.7E-17 111.4 13.0 180 11-205 127-321 (353)
301 cd00611 PSAT_like Phosphoserin 99.5 8.9E-12 1.9E-16 105.1 18.3 200 16-233 133-353 (355)
302 TIGR02379 ECA_wecE TDP-4-keto- 99.5 2E-11 4.3E-16 103.6 20.5 203 15-234 113-375 (376)
303 PLN02724 Molybdenum cofactor s 99.5 9.6E-12 2.1E-16 114.8 20.1 206 20-236 191-488 (805)
304 COG2008 GLY1 Threonine aldolas 99.5 1.2E-12 2.6E-17 106.2 12.2 206 20-234 129-341 (342)
305 TIGR01326 OAH_OAS_sulfhy OAH/O 99.4 1.3E-12 2.8E-17 112.3 13.0 92 4-106 124-219 (418)
306 PRK07050 cystathionine beta-ly 99.4 2E-12 4.4E-17 110.2 13.8 214 7-237 135-392 (394)
307 PRK11706 TDP-4-oxo-6-deoxy-D-g 99.4 2.2E-11 4.8E-16 103.4 19.4 207 11-234 108-374 (375)
308 PRK08248 O-acetylhomoserine am 99.4 3.1E-12 6.7E-17 110.1 13.8 217 4-238 131-429 (431)
309 PRK07671 cystathionine beta-ly 99.4 3.5E-12 7.6E-17 108.2 13.4 213 4-234 116-376 (377)
310 PRK05967 cystathionine beta-ly 99.4 4.5E-12 9.7E-17 107.5 13.8 213 7-237 134-392 (395)
311 PRK05939 hypothetical protein; 99.4 3.1E-12 6.7E-17 109.1 11.5 211 4-235 113-395 (397)
312 PRK06176 cystathionine gamma-s 99.4 7.6E-12 1.6E-16 106.2 13.8 213 6-236 118-378 (380)
313 PRK07812 O-acetylhomoserine am 99.4 1.2E-11 2.7E-16 106.3 14.2 212 9-238 142-433 (436)
314 PRK05994 O-acetylhomoserine am 99.4 2.3E-11 5E-16 104.8 15.5 214 5-235 131-425 (427)
315 PF12897 Aminotran_MocR: Alani 99.4 2.6E-11 5.6E-16 99.4 14.8 217 11-235 159-414 (425)
316 PRK08114 cystathionine beta-ly 99.4 1.5E-11 3.2E-16 104.3 13.9 217 4-237 129-394 (395)
317 TIGR01788 Glu-decarb-GAD gluta 99.4 1.3E-10 2.9E-15 99.8 19.1 218 11-237 175-430 (431)
318 TIGR03588 PseC UDP-4-keto-6-de 99.4 2.5E-10 5.3E-15 97.3 20.6 199 20-234 120-380 (380)
319 PRK06702 O-acetylhomoserine am 99.3 3.1E-11 6.6E-16 103.5 14.6 214 6-236 130-424 (432)
320 PRK08134 O-acetylhomoserine am 99.3 6E-11 1.3E-15 102.2 16.0 217 4-238 131-429 (433)
321 PRK12566 glycine dehydrogenase 99.3 2.5E-10 5.3E-15 104.5 20.3 207 20-239 640-879 (954)
322 PRK02769 histidine decarboxyla 99.3 2.5E-10 5.5E-15 96.7 18.9 196 21-236 160-372 (380)
323 PRK11658 UDP-4-amino-4-deoxy-L 99.3 2.2E-10 4.7E-15 97.5 18.3 208 11-234 110-377 (379)
324 PRK05367 glycine dehydrogenase 99.3 3.6E-10 7.8E-15 105.1 20.8 209 20-239 639-878 (954)
325 COG2873 MET17 O-acetylhomoseri 99.3 2.4E-10 5.2E-15 93.1 17.0 217 4-236 129-425 (426)
326 PF01053 Cys_Met_Meta_PP: Cys/ 99.3 1.3E-11 2.9E-16 104.3 9.9 215 4-235 122-386 (386)
327 PRK04311 selenocysteine syntha 99.3 9.1E-10 2E-14 95.3 19.9 218 10-235 204-463 (464)
328 COG0626 MetC Cystathionine bet 99.3 2.1E-10 4.5E-15 96.4 14.7 211 7-237 133-395 (396)
329 TIGR03531 selenium_SpcS O-phos 99.3 2.2E-10 4.7E-15 98.3 15.1 187 43-233 223-443 (444)
330 KOG1549|consensus 99.2 5.7E-10 1.2E-14 93.2 16.2 210 15-237 175-419 (428)
331 PLN02271 serine hydroxymethylt 99.2 1.4E-09 3.1E-14 94.4 19.2 212 11-235 286-539 (586)
332 TIGR00474 selA seryl-tRNA(sec) 99.2 3.2E-09 7E-14 91.7 19.7 213 10-230 199-453 (454)
333 PLN02880 tyrosine decarboxylas 99.2 5E-10 1.1E-14 97.9 14.6 212 22-240 240-488 (490)
334 PRK05613 O-acetylhomoserine am 99.2 7.4E-10 1.6E-14 95.5 14.2 209 10-236 143-436 (437)
335 COG3844 Kynureninase [Amino ac 99.2 5.7E-09 1.2E-13 83.8 17.9 211 15-239 160-405 (407)
336 PRK15407 lipopolysaccharide bi 99.2 6.6E-09 1.4E-13 89.9 19.8 209 11-235 148-435 (438)
337 TIGR00461 gcvP glycine dehydro 99.2 1.1E-08 2.4E-13 94.3 22.1 217 11-239 614-870 (939)
338 COG0399 WecE Predicted pyridox 99.2 8.1E-09 1.8E-13 86.3 19.4 209 12-236 112-373 (374)
339 TIGR01365 serC_2 phosphoserine 99.2 3.1E-09 6.8E-14 89.6 16.9 213 3-233 110-370 (374)
340 PRK06434 cystathionine gamma-l 99.2 7.7E-10 1.7E-14 93.8 13.3 196 19-235 146-383 (384)
341 PF01041 DegT_DnrJ_EryC1: DegT 99.1 5.1E-09 1.1E-13 88.6 15.5 201 15-231 107-363 (363)
342 PF00464 SHMT: Serine hydroxym 99.1 8.9E-10 1.9E-14 92.9 10.7 201 15-228 163-397 (399)
343 PLN03032 serine decarboxylase; 99.1 2.3E-08 4.9E-13 84.5 18.7 191 21-232 161-372 (374)
344 KOG0053|consensus 99.0 7.4E-09 1.6E-13 86.4 13.8 212 8-237 148-407 (409)
345 PLN02590 probable tyrosine dec 99.0 3.2E-08 6.9E-13 87.1 18.0 212 22-240 288-536 (539)
346 PLN02414 glycine dehydrogenase 99.0 4.7E-08 1E-12 91.1 18.8 194 21-232 234-465 (993)
347 PRK05367 glycine dehydrogenase 99.0 5.2E-08 1.1E-12 91.0 19.0 195 20-231 205-437 (954)
348 PLN02452 phosphoserine transam 99.0 8.4E-08 1.8E-12 81.0 18.5 200 19-236 143-363 (365)
349 COG0112 GlyA Glycine/serine hy 99.0 1.2E-07 2.5E-12 78.4 17.5 208 15-236 160-390 (413)
350 cd00615 Orn_deC_like Ornithine 99.0 2E-09 4.3E-14 88.5 7.2 140 11-158 141-292 (294)
351 COG1103 Archaea-specific pyrid 98.9 1.3E-07 2.9E-12 74.2 15.6 202 20-236 155-380 (382)
352 PRK13237 tyrosine phenol-lyase 98.9 2.9E-07 6.4E-12 78.8 18.5 211 21-236 177-433 (460)
353 PRK12462 phosphoserine aminotr 98.9 4.3E-07 9.4E-12 76.2 19.1 208 8-235 128-361 (364)
354 TIGR03799 NOD_PanD_pyr putativ 98.9 2.6E-07 5.6E-12 81.4 18.0 200 22-229 266-518 (522)
355 COG0403 GcvP Glycine cleavage 98.9 6.2E-07 1.3E-11 74.8 18.4 215 4-233 192-447 (450)
356 TIGR02618 tyr_phenol_ly tyrosi 98.8 4.9E-07 1.1E-11 77.3 17.8 209 21-236 170-426 (450)
357 PLN02263 serine decarboxylase 98.8 1.3E-06 2.9E-11 75.4 19.6 195 22-236 229-443 (470)
358 PF02347 GDC-P: Glycine cleava 98.8 9E-07 2E-11 75.3 18.0 195 19-230 195-429 (429)
359 KOG3846|consensus 98.8 1E-06 2.2E-11 70.6 16.9 207 19-238 212-463 (465)
360 cd01494 AAT_I Aspartate aminot 98.7 5.1E-08 1.1E-12 72.9 8.2 81 16-104 87-169 (170)
361 COG1003 GcvP Glycine cleavage 98.7 4E-06 8.7E-11 70.2 19.1 218 11-240 193-451 (496)
362 TIGR00461 gcvP glycine dehydro 98.6 4.7E-06 1E-10 77.3 18.6 194 21-231 194-426 (939)
363 COG1448 TyrB Aspartate/tyrosin 98.6 7.1E-07 1.5E-11 73.5 10.0 199 22-233 173-395 (396)
364 PF04864 Alliinase_C: Allinase 98.5 2.1E-06 4.6E-11 70.0 10.4 193 20-232 136-361 (363)
365 PRK15029 arginine decarboxylas 98.5 3E-05 6.5E-10 70.9 18.8 189 44-235 330-603 (755)
366 COG1921 SelA Selenocysteine sy 98.4 2.8E-06 6.1E-11 70.9 9.3 119 15-141 150-272 (395)
367 TIGR02617 tnaA_trp_ase tryptop 98.3 6.8E-05 1.5E-09 64.1 16.8 210 20-236 182-441 (467)
368 PF01276 OKR_DC_1: Orn/Lys/Arg 98.3 4.1E-05 8.9E-10 65.3 14.2 188 24-221 172-416 (417)
369 KOG0258|consensus 98.2 2E-05 4.4E-10 65.2 11.5 206 19-236 213-469 (475)
370 COG0076 GadB Glutamate decarbo 98.2 2.4E-05 5.3E-10 67.9 12.5 170 25-203 211-401 (460)
371 PF03841 SelA: L-seryl-tRNA se 98.2 2.6E-06 5.7E-11 70.5 5.3 123 12-139 126-260 (367)
372 PF05889 SLA_LP_auto_ag: Solub 98.1 4.6E-05 1E-09 63.7 11.3 206 21-235 154-389 (389)
373 KOG1383|consensus 98.1 0.00073 1.6E-08 57.4 18.1 214 15-241 212-451 (491)
374 COG1932 SerC Phosphoserine ami 98.0 0.0013 2.9E-08 54.3 18.2 196 21-236 144-363 (365)
375 PRK15400 lysine decarboxylase 98.0 0.00053 1.2E-08 62.3 16.5 198 23-234 300-557 (714)
376 PRK13578 ornithine decarboxyla 98.0 0.00086 1.9E-08 61.1 17.3 48 188-235 517-564 (720)
377 PRK12566 glycine dehydrogenase 98.0 0.0016 3.4E-08 60.8 19.0 196 18-231 205-439 (954)
378 KOG2467|consensus 97.8 0.0011 2.5E-08 54.7 14.1 181 44-235 206-425 (477)
379 KOG1412|consensus 97.8 0.00029 6.3E-09 56.9 10.3 192 30-238 187-407 (410)
380 PRK15399 lysine decarboxylase 97.8 0.0047 1E-07 56.3 18.8 201 23-235 300-558 (713)
381 KOG2040|consensus 97.7 0.0022 4.7E-08 56.9 14.4 206 19-238 678-920 (1001)
382 PF00282 Pyridoxal_deC: Pyrido 97.7 0.00076 1.6E-08 57.4 11.3 139 19-163 191-355 (373)
383 KOG0628|consensus 97.6 0.0056 1.2E-07 52.2 15.4 62 176-237 406-472 (511)
384 PF01212 Beta_elim_lyase: Beta 97.5 0.00014 3E-09 59.6 4.7 88 20-111 123-214 (290)
385 KOG0629|consensus 97.4 0.0024 5.2E-08 53.8 10.8 205 22-235 254-508 (510)
386 COG3033 TnaA Tryptophanase [Am 97.4 0.024 5.2E-07 47.1 15.6 210 19-236 183-444 (471)
387 PF06838 Met_gamma_lyase: Meth 97.3 0.0071 1.5E-07 50.3 12.1 167 19-198 152-333 (403)
388 COG1982 LdcC Arginine/lysine/o 96.8 0.097 2.1E-06 46.4 15.2 197 22-231 168-403 (557)
389 TIGR03811 tyr_de_CO2_Ent tyros 96.3 0.72 1.6E-05 41.9 18.0 135 22-162 279-475 (608)
390 KOG2040|consensus 94.4 2 4.3E-05 39.0 13.5 196 19-231 245-478 (1001)
391 COG4100 Cystathionine beta-lya 94.2 2.1 4.6E-05 35.1 12.3 177 15-198 159-344 (416)
392 KOG1411|consensus 93.9 0.042 9E-07 45.4 2.2 188 30-233 207-422 (427)
393 KOG3843|consensus 93.8 0.067 1.5E-06 42.7 3.3 190 42-238 174-404 (432)
394 smart00642 Aamy Alpha-amylase 75.1 8.4 0.00018 28.8 5.1 48 18-65 29-93 (166)
395 PF09840 DUF2067: Uncharacteri 63.2 40 0.00086 25.9 6.6 59 178-239 2-63 (190)
396 PF13872 AAA_34: P-loop contai 62.8 6 0.00013 32.6 2.2 24 42-65 159-183 (303)
397 PF12138 Spherulin4: Spherulat 60.3 21 0.00046 28.7 4.9 57 3-59 6-71 (253)
398 COG0352 ThiE Thiamine monophos 59.9 10 0.00022 29.6 2.9 22 41-62 51-72 (211)
399 COG0296 GlgB 1,4-alpha-glucan 58.7 14 0.00031 33.8 4.0 35 38-72 210-244 (628)
400 COG0108 RibB 3,4-dihydroxy-2-b 58.5 17 0.00036 28.1 3.8 37 19-60 154-190 (203)
401 KOG2790|consensus 56.9 1.1E+02 0.0024 25.3 11.3 107 127-235 252-367 (370)
402 cd04915 ACT_AK-Ectoine_2 ACT d 54.7 46 0.00099 20.3 4.8 46 187-234 17-64 (66)
403 PF13481 AAA_25: AAA domain; P 54.2 19 0.00042 27.1 3.7 46 15-60 134-184 (193)
404 cd04920 ACT_AKiii-DAPDC_2 ACT 52.8 35 0.00076 20.6 4.0 46 187-234 16-61 (63)
405 PRK03892 ribonuclease P protei 51.2 15 0.00033 28.5 2.6 49 12-60 118-171 (216)
406 PF00128 Alpha-amylase: Alpha 50.4 16 0.00035 29.6 2.9 26 40-65 50-75 (316)
407 PF03652 UPF0081: Uncharacteri 50.2 45 0.00098 23.9 4.8 51 15-65 45-98 (135)
408 PRK11633 cell division protein 48.4 1.4E+02 0.0029 23.7 7.7 58 176-233 149-213 (226)
409 cd01121 Sms Sms (bacterial rad 47.4 19 0.00041 30.8 2.9 53 8-60 143-205 (372)
410 PF13113 DUF3970: Protein of u 47.3 28 0.0006 21.0 2.7 19 210-232 4-22 (60)
411 COG1066 Sms Predicted ATP-depe 47.3 21 0.00045 31.0 3.0 57 3-59 148-214 (456)
412 smart00839 ELFV_dehydrog Gluta 46.9 89 0.0019 21.1 5.9 49 191-239 40-97 (102)
413 PF00926 DHBP_synthase: 3,4-di 46.5 36 0.00079 26.2 4.0 37 19-60 150-186 (194)
414 TIGR00789 flhB_rel flhB C-term 45.8 20 0.00043 23.4 2.2 24 42-65 27-50 (82)
415 TIGR00506 ribB 3,4-dihydroxy-2 43.7 45 0.00098 25.8 4.2 34 21-59 157-190 (199)
416 cd00984 DnaB_C DnaB helicase C 43.6 24 0.00052 27.8 2.8 43 18-60 120-168 (242)
417 cd04751 Commd3 COMM_Domain con 43.0 1E+02 0.0022 20.6 5.4 27 209-239 66-92 (95)
418 PRK05409 hypothetical protein; 42.1 39 0.00084 27.7 3.8 33 31-63 65-97 (281)
419 COG4799 Acetyl-CoA carboxylase 41.8 1.9E+02 0.0042 26.1 8.2 49 19-67 322-371 (526)
420 PF05036 SPOR: Sporulation rel 41.5 72 0.0016 19.5 4.4 46 186-231 16-65 (76)
421 PF06153 DUF970: Protein of un 41.3 34 0.00074 23.6 2.8 46 186-235 11-65 (109)
422 TIGR02403 trehalose_treC alpha 40.8 64 0.0014 29.2 5.3 46 20-65 39-98 (543)
423 PF13401 AAA_22: AAA domain; P 40.8 35 0.00077 23.6 3.1 25 41-65 73-98 (131)
424 PF07905 PucR: Purine cataboli 39.8 44 0.00096 23.4 3.4 52 2-60 48-104 (123)
425 cd04937 ACT_AKi-DapG-BS_2 ACT 39.8 81 0.0018 18.9 4.2 46 187-234 17-62 (64)
426 PF01408 GFO_IDH_MocA: Oxidore 39.5 60 0.0013 22.1 4.1 31 24-60 88-118 (120)
427 PLN03244 alpha-amylase; Provis 39.1 57 0.0012 31.0 4.7 32 38-69 437-468 (872)
428 COG0529 CysC Adenylylsulfate k 38.8 1.6E+02 0.0035 22.5 6.3 65 174-238 23-92 (197)
429 PF12310 Elf-1_N: Transcriptio 38.2 40 0.00087 23.2 2.8 49 3-67 10-60 (108)
430 PRK06512 thiamine-phosphate py 37.4 44 0.00094 26.3 3.3 21 42-62 58-78 (221)
431 PRK09441 cytoplasmic alpha-amy 36.4 43 0.00094 29.7 3.5 26 40-65 79-104 (479)
432 PF07085 DRTGG: DRTGG domain; 35.4 70 0.0015 21.5 3.8 45 6-60 45-90 (105)
433 PF00150 Cellulase: Cellulase 35.4 44 0.00096 26.7 3.3 21 42-62 62-82 (281)
434 cd04918 ACT_AK1-AT_2 ACT domai 35.2 1E+02 0.0022 18.5 4.5 46 187-234 16-63 (65)
435 PF06877 RraB: Regulator of ri 35.2 1.4E+02 0.003 20.0 6.2 60 177-237 28-95 (104)
436 COG4050 Uncharacterized protei 34.8 1E+02 0.0023 21.5 4.4 32 208-241 120-151 (152)
437 PRK00910 ribB 3,4-dihydroxy-2- 34.5 77 0.0017 24.9 4.2 34 21-59 168-201 (218)
438 TIGR02402 trehalose_TreZ malto 34.5 58 0.0012 29.5 4.0 29 40-68 158-186 (542)
439 PRK11823 DNA repair protein Ra 34.3 48 0.001 29.1 3.5 51 10-60 143-203 (446)
440 COG3286 Uncharacterized protei 34.2 2.2E+02 0.0047 22.0 7.0 51 188-240 15-67 (204)
441 cd04923 ACT_AK-LysC-DapG-like_ 32.8 98 0.0021 17.9 3.8 46 187-234 16-61 (63)
442 PRK00014 ribB 3,4-dihydroxy-2- 32.4 87 0.0019 24.8 4.2 39 21-64 172-211 (230)
443 PF14258 DUF4350: Domain of un 32.0 1.2E+02 0.0027 18.5 4.5 38 19-61 33-70 (70)
444 PF03460 NIR_SIR_ferr: Nitrite 32.0 46 0.001 20.4 2.2 23 32-56 16-38 (69)
445 PRK13602 putative ribosomal pr 31.8 90 0.002 20.2 3.6 41 15-63 21-61 (82)
446 PRK11895 ilvH acetolactate syn 31.7 2.2E+02 0.0047 21.2 6.6 50 186-235 14-69 (161)
447 COG2257 Uncharacterized homolo 31.5 31 0.00067 22.8 1.3 25 42-66 32-56 (92)
448 smart00545 JmjN Small domain f 31.0 75 0.0016 17.7 2.7 20 41-60 16-35 (42)
449 cd07571 ALP_N-acyl_transferase 30.8 1E+02 0.0022 24.9 4.6 37 24-60 41-77 (270)
450 PF12122 DUF3582: Protein of u 30.8 1.3E+02 0.0027 20.5 4.3 53 180-236 6-60 (101)
451 COG0616 SppA Periplasmic serin 30.5 37 0.0008 28.3 2.0 45 19-64 95-139 (317)
452 TIGR02100 glgX_debranch glycog 30.3 69 0.0015 30.0 3.9 26 40-65 243-268 (688)
453 cd04922 ACT_AKi-HSDH-ThrA_2 AC 30.2 1.2E+02 0.0026 17.8 4.6 47 186-234 16-64 (66)
454 PRK01792 ribB 3,4-dihydroxy-2- 30.0 1E+02 0.0022 24.2 4.1 35 21-60 167-201 (214)
455 PLN02361 alpha-amylase 29.9 65 0.0014 27.9 3.5 47 19-65 40-99 (401)
456 PRK00109 Holliday junction res 29.6 87 0.0019 22.6 3.6 6 59-64 94-99 (138)
457 PRK11524 putative methyltransf 29.5 1E+02 0.0023 25.1 4.5 46 15-60 21-79 (284)
458 COG1105 FruK Fructose-1-phosph 29.2 70 0.0015 26.6 3.3 42 17-64 127-168 (310)
459 PLN00196 alpha-amylase; Provis 29.0 70 0.0015 28.0 3.5 47 19-65 55-115 (428)
460 PF05114 DUF692: Protein of un 29.0 65 0.0014 26.3 3.1 32 31-62 63-94 (274)
461 cd01123 Rad51_DMC1_radA Rad51_ 28.2 63 0.0014 25.2 2.9 48 17-64 110-170 (235)
462 PF05621 TniB: Bacterial TniB 28.2 11 0.00025 31.0 -1.3 43 17-59 141-184 (302)
463 COG3589 Uncharacterized conser 27.8 31 0.00067 28.9 1.1 76 26-111 33-109 (360)
464 TIGR00416 sms DNA repair prote 27.8 68 0.0015 28.3 3.3 52 8-59 155-216 (454)
465 PF00586 AIRS: AIR synthase re 27.7 79 0.0017 20.8 2.9 21 40-60 73-93 (96)
466 COG3286 Uncharacterized protei 27.3 2.9E+02 0.0064 21.3 7.1 50 187-241 90-139 (204)
467 PF07131 DUF1382: Protein of u 27.2 1.5E+02 0.0033 17.9 5.8 42 188-239 12-53 (61)
468 PF07282 OrfB_Zn_ribbon: Putat 27.2 98 0.0021 18.9 3.1 24 42-65 3-27 (69)
469 PRK00745 4-oxalocrotonate taut 27.0 1.4E+02 0.0031 17.6 4.7 32 208-239 2-33 (62)
470 PF13167 GTP-bdg_N: GTP-bindin 26.9 2E+02 0.0044 19.3 4.8 26 37-62 39-65 (95)
471 cd04936 ACT_AKii-LysC-BS-like_ 26.7 1.4E+02 0.0029 17.2 3.9 46 187-234 16-61 (63)
472 cd01822 Lysophospholipase_L1_l 26.7 49 0.0011 24.2 2.0 18 42-59 122-139 (177)
473 PRK02289 4-oxalocrotonate taut 26.6 1.5E+02 0.0032 17.6 4.9 31 209-239 3-33 (60)
474 PF05913 DUF871: Bacterial pro 26.5 73 0.0016 27.2 3.1 44 19-63 25-68 (357)
475 TIGR01766 tspaseT_teng_C trans 26.4 94 0.002 19.7 3.1 24 42-65 57-81 (82)
476 cd04917 ACT_AKiii-LysC-EC_2 AC 26.4 1.5E+02 0.0032 17.6 4.5 46 187-234 17-62 (64)
477 PRK01964 4-oxalocrotonate taut 26.4 1.5E+02 0.0033 17.7 4.7 32 208-239 2-33 (64)
478 cd01393 recA_like RecA is a b 26.3 1.2E+02 0.0025 23.5 4.1 45 19-63 112-168 (226)
479 PF02581 TMP-TENI: Thiamine mo 26.3 77 0.0017 23.8 3.0 21 42-62 43-63 (180)
480 PRK10907 intramembrane serine 26.0 1.8E+02 0.0038 23.9 5.1 53 180-236 6-58 (276)
481 cd01821 Rhamnogalacturan_acety 26.0 98 0.0021 23.3 3.6 41 19-59 105-150 (198)
482 PF13991 BssS: BssS protein fa 25.9 1.1E+02 0.0024 19.4 3.1 26 215-240 39-64 (73)
483 PRK09314 bifunctional 3,4-dihy 25.8 1.2E+02 0.0027 25.6 4.3 34 21-59 156-189 (339)
484 PRK12313 glycogen branching en 25.5 83 0.0018 29.1 3.5 30 38-67 216-245 (633)
485 smart00481 POLIIIAc DNA polyme 24.9 1.2E+02 0.0026 18.2 3.2 11 44-54 17-27 (67)
486 TIGR00119 acolac_sm acetolacta 24.8 2.9E+02 0.0063 20.4 6.4 50 186-235 13-68 (157)
487 CHL00200 trpA tryptophan synth 24.7 1.1E+02 0.0023 24.9 3.6 16 15-30 138-153 (263)
488 COG4422 Bacteriophage protein 24.3 1.6E+02 0.0034 22.6 4.1 25 37-61 198-222 (250)
489 PF04002 RadC: RadC-like JAB d 24.2 1.4E+02 0.003 20.9 3.8 27 32-58 74-103 (123)
490 PRK09319 bifunctional 3,4-dihy 24.1 1.3E+02 0.0028 27.3 4.2 35 21-60 161-195 (555)
491 cd00532 MGS-like MGS-like doma 24.1 2.4E+02 0.0052 19.2 5.1 45 15-62 61-106 (112)
492 PF07505 Gp37_Gp68: Phage prot 23.8 1.5E+02 0.0032 24.1 4.2 39 22-61 189-227 (261)
493 KOG2781|consensus 23.8 1.9E+02 0.0041 23.2 4.6 36 22-62 104-141 (290)
494 TIGR01515 branching_enzym alph 23.6 1.1E+02 0.0025 28.1 4.0 29 39-67 203-231 (613)
495 COG2159 Predicted metal-depend 23.6 1.5E+02 0.0033 24.4 4.4 46 16-67 121-166 (293)
496 TIGR01712 phage_N6A_met phage 23.5 1.7E+02 0.0036 22.0 4.2 28 24-57 64-91 (166)
497 PRK10933 trehalose-6-phosphate 23.5 95 0.0021 28.2 3.5 48 18-65 43-104 (551)
498 TIGR03677 rpl7ae 50S ribosomal 23.5 95 0.0021 21.6 2.8 42 15-63 36-77 (117)
499 cd02742 GH20_hexosaminidase Be 23.3 1.1E+02 0.0024 25.3 3.6 24 37-60 67-90 (303)
500 PF02082 Rrf2: Transcriptional 23.0 2.1E+02 0.0046 18.2 5.2 40 186-225 40-81 (83)
No 1
>COG4992 ArgD Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism]
Probab=100.00 E-value=1.1e-46 Score=307.92 Aligned_cols=235 Identities=41% Similarity=0.704 Sum_probs=220.3
Q ss_pred cccccCCCChhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCC
Q psy6548 3 LQFPVKSKQVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDV 81 (242)
Q Consensus 3 ~~~~~~~~d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~ 81 (242)
.+..+||||+++ +.+.+++|++|++||+|+.+|-++|+++||++++++|++||+++|.||+|+|+||+|+.|+.+++++
T Consensus 165 g~~~vpfnDi~al~~ai~~~taAvivEPIQGEgGV~~~~~~fl~~lr~lCd~~g~LLI~DEVQtG~GRTGk~fA~e~~gV 244 (404)
T COG4992 165 GFRHVPFNDIEALEAAIDEDTAAVIVEPIQGEGGVIPAPPEFLKALRELCDEHGALLILDEVQTGLGRTGKLFAYEHYGV 244 (404)
T ss_pred CceecCCCCHHHHHHHhccCeEEEEEecccCCCCCCCCCHHHHHHHHHHHHHhCeEEEEeccccCCCccchHHHHHHhCC
Confidence 467899999999 7777779999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEeeccccCCccchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhh
Q psy6548 82 RPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELRSR 161 (242)
Q Consensus 82 ~~~~~~~sK~~~~g~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l~~~ 161 (242)
.||+++++|++||| +|+|.++.++...+.+.++.|++||++||++++++.++++.+.++++.++.+++..+++++| ++
T Consensus 245 ~PDI~tlaK~LgGG-~PigA~la~~~~~~~~~~G~HgSTfGGNpLacAv~~a~l~~l~~e~ll~~v~~~g~~~~~~L-~~ 322 (404)
T COG4992 245 EPDILTLAKALGGG-FPIGAMLATEEIASAFTPGDHGSTFGGNPLACAVALAVLEVLLEEGLLENVREKGEYLLQRL-RE 322 (404)
T ss_pred CCCEEEeeccccCC-ccceeeEEchhhhhcCCCCcccCCCCcCHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHH-HH
Confidence 99999999999999 99999999977788899999999999999999999999999999999999999999999999 77
Q ss_pred cCC--CCCCeEeeeceeEEEEecCCchhHHHHHHHHHHCCceeccCCCCEEEEeccCcCCHHHHHHHHHHHHHHHHHHhh
Q psy6548 162 LSP--DIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINTMAA 239 (242)
Q Consensus 162 l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~~~ 239 (242)
+.. ....++++.|+++++++..+ ..+..+.+.|.++|+++.+.+++.+||.|++..++|++++++++|+++++....
T Consensus 323 l~~~~~~v~~vRG~GLmiGiel~~~-~~a~~~~~~~~~~gvL~~~a~~~ViR~~PpL~i~~eei~~~~~~l~~~l~~~~~ 401 (404)
T COG4992 323 LKRRYPLVKEVRGRGLMIGIELKEP-YRARDIVRALREEGVLVLPAGPNVIRFLPPLVITEEEIDEALDALERALAAASA 401 (404)
T ss_pred HhhcCCceeeeecceeEEEEEecCc-ccHHHHHHHHHHCCeEEecCCCCeEEecCCccCCHHHHHHHHHHHHHHHHHhhh
Confidence 754 35788899999999999886 368899999999999999999999999999999999999999999999997654
Q ss_pred h
Q psy6548 240 K 240 (242)
Q Consensus 240 ~ 240 (242)
.
T Consensus 402 ~ 402 (404)
T COG4992 402 R 402 (404)
T ss_pred c
Confidence 3
No 2
>COG0160 GabT 4-aminobutyrate aminotransferase and related aminotransferases [Amino acid transport and metabolism]
Probab=100.00 E-value=3.4e-41 Score=282.95 Aligned_cols=216 Identities=44% Similarity=0.759 Sum_probs=201.8
Q ss_pred CCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEEeeccccCCccc
Q psy6548 19 NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYP 98 (242)
Q Consensus 19 ~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~sK~~~~g~~~ 98 (242)
..+++++++||+|+.+|.++|+++|+++++++|++||+++|+||+|+|||++|+.|+++++|+.||++++||++++| +|
T Consensus 220 ~~~vAaiI~EpIQgegG~~v~p~~fl~~l~~~~~~~gillI~DEVQtG~GRTG~~fa~E~~gv~PDivt~aK~ig~G-~P 298 (447)
T COG0160 220 PEEVAAIIIEPIQGEGGIIVPPKGFLKALRKLCREHGILLIADEVQTGFGRTGKMFAFEHFGVEPDIVTLAKSLGGG-LP 298 (447)
T ss_pred CCceeEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCccccchhhhhcCCCCCEEEecccccCC-Cc
Confidence 35799999999999999999999999999999999999999999999999999999999999999999999999999 99
Q ss_pred hheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhhcCC--CCCCeEeeecee
Q psy6548 99 ISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELRSRLSP--DIVPVVRGKGLL 176 (242)
Q Consensus 99 ~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l~~~l~~--~~~~~~~~~~~~ 176 (242)
+|.+++.+++++ ..+..+.+||.+||++++++++.|+.++++++.++..+..++++++| .++.. ..+..+++.|.+
T Consensus 299 l~avv~r~ei~~-~~~g~~~~Tf~GNpva~Aaa~AvL~vie~e~L~~~a~~~G~~l~~~L-~~l~~~~~~IgdVRG~Glm 376 (447)
T COG0160 299 LSAVVGRAEIMD-WPPGGHGGTFGGNPVACAAALAVLDVIEEENLLERAAELGEYLRDRL-EELQEKHPLIGDVRGLGLM 376 (447)
T ss_pred eeEEeccHHhcc-cCCcccCCCCCcCHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHH-HHHHhhcCceecccccceE
Confidence 999999999999 88888999999999999999999999999999999999999999999 77753 467788999999
Q ss_pred EEEEecCCc-------hhHHHHHHHHHHCCceeccCC--CCEEEEeccCcCCHHHHHHHHHHHHHHHHHH
Q psy6548 177 NAIVLDKSI-------LEVYDVCIKMKDAGLVTKPIS--NNIIRLSPALNITEQELREGLDIIINTINTM 237 (242)
Q Consensus 177 ~~~~~~~~~-------~~~~~~~~~l~~~gi~~~~~~--~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~ 237 (242)
+.+++..+. .....+.++++++|+++..++ .+.+||.|++..++|++|++++.|++++++.
T Consensus 377 ~giE~v~d~~t~~p~~~~~~~i~~~~~~~Glil~~~G~~~nviRi~PPL~is~e~~d~~l~il~~al~~~ 446 (447)
T COG0160 377 IGVELVKDRDTKEPDAELAAKIVARAFERGLLLLTCGPHGNVLRILPPLTISDEELDEGLDILEEALKEA 446 (447)
T ss_pred EEEEEecCCCCCCCCHHHHHHHHHHHHHcCCEEeccCCCCcEEEEeCCcccCHHHHHHHHHHHHHHHHhh
Confidence 999998642 457789999999999999887 8999999999999999999999999998864
No 3
>KOG1402|consensus
Probab=100.00 E-value=1e-40 Score=262.69 Aligned_cols=231 Identities=60% Similarity=0.995 Sum_probs=215.4
Q ss_pred ccccCCCChhh--hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCC
Q psy6548 4 QFPVKSKQVPA--KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDV 81 (242)
Q Consensus 4 ~~~~~~~d~~~--~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~ 81 (242)
+..+||||.++ ..+++++++++++||+|+..|-++|++.||++.+++|++||+++|.||+|+|++++|+.++.++.++
T Consensus 188 ~~~v~Y~d~eale~~l~~~~vaaFivEPIQGEaGVvvP~~GYL~~vreLCtkynvl~I~DEvQTGl~RTGk~la~d~env 267 (427)
T KOG1402|consen 188 VDKVPYGDAEALEVALKSPNVAAFIVEPIQGEAGVVVPPPGYLKKVRELCTKYNVLLIADEVQTGLARTGKLLACDYENV 267 (427)
T ss_pred ceeeccCCHHHHHHHhcCCCeeEEEeeccccccceEeCCchhHHHHHHHHHhhcEEEEehhhhhcccccCcEEEeehhhc
Confidence 45689999999 7788999999999999999999999999999999999999999999999999999999999899999
Q ss_pred CCCEEEeeccccCCccchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhh
Q psy6548 82 RPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELRSR 161 (242)
Q Consensus 82 ~~~~~~~sK~~~~g~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l~~~ 161 (242)
.||+++++|+++||++|++.+++++++|-.+.++.|++||.+||++++++.|+|+.+.++.+.++.++++..++.+| +.
T Consensus 268 ~PDivilgKalSGG~~Pvsavl~~~~im~~~~pgeHgsTyggNpLg~~vaiAalevi~eekL~era~~lG~~l~~~L-~~ 346 (427)
T KOG1402|consen 268 RPDIVILGKALSGGVYPVSAVLADDDIMLNIKPGEHGSTYGGNPLGCAVAIAALEVIVEEKLVERAAKLGEILRDQL-NK 346 (427)
T ss_pred CCCeEEEeccccCCeeeeEEEEecHHHHhccCCCccccccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999 88
Q ss_pred cCCC---CCCeEeeeceeEEEEecCCc---hhHHHHHHHHHHCCceeccCCCCEEEEeccCcCCHHHHHHHHHHHHHHHH
Q psy6548 162 LSPD---IVPVVRGKGLLNAIVLDKSI---LEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTIN 235 (242)
Q Consensus 162 l~~~---~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~gi~~~~~~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~ 235 (242)
++.. +...+++.|.+..+.+.... .++..++-.|.++|++..|.+++.+||.|++..+++|+++.++.+.+.+.
T Consensus 347 l~~~~p~~v~~VRGrGl~~ai~i~~~~~~~~~aw~~cl~lk~~g~LAkptH~~IiRfaPPL~I~e~dl~eg~e~i~k~i~ 426 (427)
T KOG1402|consen 347 LQKKFPHVVKEVRGRGLLNAIVINPSKTSGQDAWDVCLALKENGLLAKPTHGNIIRFAPPLVISEEDLREGIEAIEKTIA 426 (427)
T ss_pred ccccccchhheeeccceEEEEEeccccccchhHHHHHHcccccccccCCCCCCeEEecCCcccCHHHHHHHHHHHHHHhc
Confidence 8743 46778899999998877432 67888999999999999999999999999999999999999999988764
No 4
>PRK11522 putrescine--2-oxoglutarate aminotransferase; Provisional
Probab=100.00 E-value=2.2e-39 Score=278.87 Aligned_cols=235 Identities=37% Similarity=0.617 Sum_probs=208.1
Q ss_pred cccccCCCChhh--hcCC-----CCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccc
Q psy6548 3 LQFPVKSKQVPA--KLKS-----NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLA 75 (242)
Q Consensus 3 ~~~~~~~~d~~~--~~~~-----~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~ 75 (242)
.+..+||||+++ +.+. .+++++|++||+++++|.++|+++|+++++++|++||+++|+||+|+|||++|..|+
T Consensus 206 ~~~~~~~~d~~~l~~~l~~~~~~~~~iAavIvEpv~g~~G~~~pp~~yl~~lr~lc~~~g~llI~DEV~tG~GRtG~~~a 285 (459)
T PRK11522 206 GFRHVPFGNIEAMRTALSECKKTGDDVAAVILEPIQGEGGVILPPEGYLTAVRKLCDEFGALLILDEVQTGMGRTGKMFA 285 (459)
T ss_pred CCcccCCCCHHHHHHHHHHhhccCCcEEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEeccceecCCccchhhh
Confidence 356789999987 3332 367999999999999999999999999999999999999999999999999999888
Q ss_pred cccCCCCCCEEEeeccccCCccchheeEeChhhhhccC--CCCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Q psy6548 76 IHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLV--PGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEI 153 (242)
Q Consensus 76 ~~~~~~~~~~~~~sK~~~~g~~~~g~~~~~~~~~~~l~--~~~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~ 153 (242)
++++++.||++++||++++|++|+|.+++++++++.+. +..+++||++||+++++++++++.++++++.++++++.++
T Consensus 286 ~e~~gv~PDivt~gK~lggG~~Pigav~~~~~i~~~~~~~~~~~~~T~~gnp~~~Aaala~L~~i~~~~l~~~~~~~g~~ 365 (459)
T PRK11522 286 CEHENVQPDILCLAKALGGGVMPIGATIATEEVFSVLFDNPFLHTTTFGGNPLACAAALATINVLLEQNLPAQAEQKGDY 365 (459)
T ss_pred hhccCCCCCEEEechhhhCCCccceeEEEcHHHHHHhccCCcccCCCCCCCHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 89999999999999999999779999999999888764 3467889999999999999999999888899999999999
Q ss_pred HHHHHHhhcCC--C-CCCeEeeeceeEEEEecCCchhHHHHHHHHHHCCceeccC--CCCEEEEeccCcCCHHHHHHHHH
Q psy6548 154 FRSELRSRLSP--D-IVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPI--SNNIIRLSPALNITEQELREGLD 228 (242)
Q Consensus 154 l~~~l~~~l~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~--~~~~lR~~~~~~~t~e~i~~~~~ 228 (242)
+++.| +++.. . ....+.+.|.++.+++..+ .....+.+.|+++||++.+. +.+.+|++|++.+|++|++++++
T Consensus 366 l~~~L-~~l~~~~~~~i~~VrG~Gl~~giel~~~-~~~~~i~~~l~~~Gvl~~~~~~~~~~lr~~Ppl~~t~~~id~~l~ 443 (459)
T PRK11522 366 LLDGF-RQLAREYPDLVQEARGKGMLMAIEFVDN-EIGYNFASEMFRQRVLVAGTLNNAKTIRIEPPLTLTIEQCEQVLK 443 (459)
T ss_pred HHHHH-HHHHHhCCCceeeEEeceeEEEEEecCc-hHHHHHHHHHHHCCeEEEecCCCCCEEEEECCccCCHHHHHHHHH
Confidence 99999 66642 2 4567788999999999875 45678999999999999765 46899999999999999999999
Q ss_pred HHHHHHHHHhh
Q psy6548 229 IIINTINTMAA 239 (242)
Q Consensus 229 ~l~~~l~~~~~ 239 (242)
+|++++.++.+
T Consensus 444 ~l~~~l~~~~~ 454 (459)
T PRK11522 444 AARKALAAMRV 454 (459)
T ss_pred HHHHHHHHHHH
Confidence 99999988654
No 5
>TIGR03372 putres_am_tran putrescine aminotransferase. Members of this family are putrescine aminotransferase, as found in Escherichia coli, Erwinia carotovora subsp. atroseptica, and closely related species. This pyridoxal phosphate enzyme, as characterized in E. coli, can act also on cadaverine and, more weakly, spermidine.
Probab=100.00 E-value=3.1e-39 Score=276.21 Aligned_cols=229 Identities=36% Similarity=0.623 Sum_probs=202.6
Q ss_pred ccccCCCChhh--hcCC-----CCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCccccc
Q psy6548 4 QFPVKSKQVPA--KLKS-----NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAI 76 (242)
Q Consensus 4 ~~~~~~~d~~~--~~~~-----~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~ 76 (242)
+..+|++|++. +.+. .+++++|++||+++++|.++|+++|+++++++|++||+++|+||+|+|||++|..|++
T Consensus 200 ~~~~p~~d~~~~~~~l~~~~~~~~~vAavIvEpv~g~gG~~~p~~~yl~~l~~lc~~~g~llI~DEV~tG~GRtG~~~a~ 279 (442)
T TIGR03372 200 FHHVAFGDIEAMLKALNECKKTGDDVAAIILEPIQGEGGVILPPEGYLPAVRALCDEFGALLILDEVQTGMGRTGKMFAC 279 (442)
T ss_pred CEEeCCCCHHHHHHHHHHHhcCCCcEEEEEEeCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeecccCCCccccchhh
Confidence 56789999887 3332 3689999999999999999999999999999999999999999999999999998888
Q ss_pred ccCCCCCCEEEeeccccCCccchheeEeChhhhhccC--CCCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Q psy6548 77 HYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLV--PGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIF 154 (242)
Q Consensus 77 ~~~~~~~~~~~~sK~~~~g~~~~g~~~~~~~~~~~l~--~~~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l 154 (242)
+++++.||++++||++++|++|+|.+++++++++.+. +..+++||++||+++++++++++.++++++.++.+++.+++
T Consensus 280 e~~gv~PDivt~gK~lg~G~~Pigavv~~~~i~~~~~~~~~~~~~T~~gnp~~~Aaa~a~L~~i~~~~l~~~~~~~G~~l 359 (442)
T TIGR03372 280 EHEGVQPDILCLAKALGGGVMPIGATIATEAVFSVLFDNPFLHTTTFGGNPLACAAALATINELLEKNLPAQAAIKGDFL 359 (442)
T ss_pred hhcCCCCCeeeehhhhcCCcccceEEEecHHHHHhhhccCccccCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 9999999999999999999779999999999988773 34678899999999999999999999888999999999999
Q ss_pred HHHHHhhcCC--C-CCCeEeeeceeEEEEecCCchhHHHHHHHHHHCCceeccC--CCCEEEEeccCcCCHHHHHHHHHH
Q psy6548 155 RSELRSRLSP--D-IVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPI--SNNIIRLSPALNITEQELREGLDI 229 (242)
Q Consensus 155 ~~~l~~~l~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~--~~~~lR~~~~~~~t~e~i~~~~~~ 229 (242)
++.| +++.. . ....+.+.|.++.+++.++ .....+.+.|+++|+++.+. +.+.+||.|++.+|++|+++++++
T Consensus 360 ~~~L-~~l~~~~~~~i~~vRG~Gl~~giel~~~-~~~~~i~~~l~~~Gvl~~~~~~~~~~lr~~Ppl~~t~~~id~~~~~ 437 (442)
T TIGR03372 360 LDGF-QQLAAEYPDLIIEARGKGLLMAIEFRDN-EIGYAFAKELFQQNILVAGTLNNAKSIRIEPPLTITIEQCALVIKA 437 (442)
T ss_pred HHHH-HHHHHhCCCceEEEecceEEEEEEeCCh-HHHHHHHHHHHHCCcEEeecCCCCCEEEEECCcccCHHHHHHHHHH
Confidence 9999 66542 2 3466788999999999876 45678999999999999765 357999999999999999999999
Q ss_pred HHHHH
Q psy6548 230 IINTI 234 (242)
Q Consensus 230 l~~~l 234 (242)
|++++
T Consensus 438 l~~~~ 442 (442)
T TIGR03372 438 AKDAL 442 (442)
T ss_pred HHHhC
Confidence 98763
No 6
>TIGR03246 arg_catab_astC succinylornithine transaminase family. Members of the seed alignment for this protein family are the enzyme succinylornithine transaminase (EC 2.6.1.81), which catalyzes the third of five steps in arginine succinyltransferase (AST) pathway, an ammonia-releasing pathway of arginine degradation. All seed alignment sequences are found within arginine succinyltransferase operons, and all proteins that score above 820.0 bits should function as succinylornithine transaminase. However, a number of sequences extremely closely related in sequence, found in different genomic contexts, are likely to act in different biological processes and may act on different substrates. This model is desigated subfamily rather than equivalog, pending further consideration, for this reason.
Probab=100.00 E-value=1e-38 Score=271.94 Aligned_cols=232 Identities=37% Similarity=0.627 Sum_probs=205.2
Q ss_pred ccccCCCChhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCC
Q psy6548 4 QFPVKSKQVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVR 82 (242)
Q Consensus 4 ~~~~~~~d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~ 82 (242)
+..+||||+++ +...++++++|++||+++++|.++|+.+++++|+++|++||+++|+||+|+|+|++|..++..++++.
T Consensus 161 ~~~~~~~d~~~l~~~l~~~~aavi~Epi~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tG~Gr~G~~~a~~~~gv~ 240 (397)
T TIGR03246 161 IKHAPYNDLAAAKALISDKTCAVIVEPIQGEGGVVPADPAFLKGLRELCDRHNALLIFDEVQTGVGRTGELYAYMHYGVT 240 (397)
T ss_pred eEEeCCCCHHHHHHHhccCeEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhcCCccccchhhhhcCCC
Confidence 45789999999 55555689999999999999988899999999999999999999999999999999987777888999
Q ss_pred CCEEEeeccccCCccchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhhc
Q psy6548 83 PDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELRSRL 162 (242)
Q Consensus 83 ~~~~~~sK~~~~g~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l~~~l 162 (242)
||++++||++++| +|+|++++++++++.+....+..|++++|++++++.++++.++.+++.++++++++++++.| +++
T Consensus 241 pDi~t~~K~lggG-~pigav~~~~~i~~~~~~~~~~~t~~~~p~~~aaa~a~l~~~~~~~l~~~~~~~~~~l~~~L-~~l 318 (397)
T TIGR03246 241 PDILTSAKALGGG-FPIGAMLTTTEIAAHLKVGTHGTTYGGNPLACAVAGKVLDLVNTPELLAGVKQRHDLFVDGL-EKI 318 (397)
T ss_pred CCEEEeehhhhCC-cceeEEEEcHHHHHhccCCCcCCCCCCCHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHH-HHH
Confidence 9999999999999 99999999999999888766788999999999999999998877789999999999999999 666
Q ss_pred CC--CCCCeEeeeceeEEEEecCCc-hhHHHHHHHHHHCCceeccCCCCEEEEeccCcCCHHHHHHHHHHHHHHHHHH
Q psy6548 163 SP--DIVPVVRGKGLLNAIVLDKSI-LEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINTM 237 (242)
Q Consensus 163 ~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~gi~~~~~~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~ 237 (242)
.. .....+++.|.++.+++.... .....+++.|+++|+++.+.+.+.+|++|++.+|++++++++++|++++.++
T Consensus 319 ~~~~~~~~~vrg~G~~~~i~~~~~~~~~~~~~~~~l~~~Gv~~~~~g~~~lR~~p~~~~t~~~i~~~~~~l~~~l~~~ 396 (397)
T TIGR03246 319 NARYNVFSEIRGKGLLIGAVLTEAYQGKAKQFVNAAAEEGVIALIAGPNVVRFAPSLVISDDDIDEGLARFERAIEQV 396 (397)
T ss_pred HhcCCCeEeeecCceEEEEEEcCchhhHHHHHHHHHHHCCeEEeecCCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 42 334456778888888876531 3567899999999999998877899999999999999999999999988764
No 7
>PRK03244 argD acetylornithine aminotransferase; Provisional
Probab=100.00 E-value=3.7e-38 Score=269.11 Aligned_cols=231 Identities=39% Similarity=0.631 Sum_probs=205.2
Q ss_pred ccccCCCChhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCC
Q psy6548 4 QFPVKSKQVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVR 82 (242)
Q Consensus 4 ~~~~~~~d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~ 82 (242)
+..+|++|++. +.+.++++++|++||+++++|.++|+++|+++|+++|++||+++|+||+|+|||++|..++++..++.
T Consensus 165 ~~~~~~~d~~~l~~~~~~~~~aviiep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~gr~g~~~~~~~~~~~ 244 (398)
T PRK03244 165 VEHVPYGDVDALAAAVDDDTAAVFLEPIQGEAGVVPPPAGYLAAAREITDRHGALLVLDEVQTGIGRTGAWFAHQHDGVT 244 (398)
T ss_pred ceEeCCCCHHHHHHhhcCCeEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCcccchHHhhhhhCCC
Confidence 56788999988 54445789999999999999999999999999999999999999999999999999886666777889
Q ss_pred CCEEEeeccccCCccchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhhc
Q psy6548 83 PDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELRSRL 162 (242)
Q Consensus 83 ~~~~~~sK~~~~g~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l~~~l 162 (242)
||+++|||++++| +|+|++++++++++.+.+..+..+|+.++++++++.++++.++.+++.++++++++++++.| +.+
T Consensus 245 pDi~t~sK~l~~G-~~ig~~~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~l~~~L-~~~ 322 (398)
T PRK03244 245 PDVVTLAKGLGGG-LPIGACLAFGPAADLLTPGLHGSTFGGNPVACAAALAVLDTIASEGLLENAERLGEQLRAGI-EAL 322 (398)
T ss_pred CCEEEEchhhhCC-cccEEEEEcHHHHhhccCCCCcCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH-Hhc
Confidence 9999999999999 89999999999999888777888999999999999999998887788999999999999999 766
Q ss_pred CCCCCCeEeeeceeEEEEecCCchhHHHHHHHHHHCCceeccCCCCEEEEeccCcCCHHHHHHHHHHHHHHHHHHh
Q psy6548 163 SPDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINTMA 238 (242)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~~ 238 (242)
+........+.|.+++++++.+ ....+.+.|.++|+++.+.+.+.+|++|++.++++|+++++++|++++.+++
T Consensus 323 ~~~~~~~v~g~g~~~~i~~~~~--~~~~~~~~l~~~Gv~~~~~~~~~iR~~p~~~~t~~~i~~~~~~l~~~l~~~~ 396 (398)
T PRK03244 323 GHPLVDHVRGRGLLLGIVLTAP--VAKAVEAAAREAGFLVNAVAPDVIRLAPPLIITDAQVDAFVAALPAILDAAA 396 (398)
T ss_pred CCCceeeEeeccEEEEEEEecc--HHHHHHHHHHHCCeEEeecCCCEEEEECCCcCCHHHHHHHHHHHHHHHHhcc
Confidence 5333345667899999999653 5778999999999999987778999999999999999999999999998754
No 8
>PRK12381 bifunctional succinylornithine transaminase/acetylornithine transaminase; Provisional
Probab=100.00 E-value=8.5e-38 Score=267.05 Aligned_cols=235 Identities=34% Similarity=0.597 Sum_probs=207.0
Q ss_pred ccccCCCChhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCC
Q psy6548 4 QFPVKSKQVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVR 82 (242)
Q Consensus 4 ~~~~~~~d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~ 82 (242)
+..+||||+++ +...++++++|++||+++++|.++|+.+++++|+++|++||+++|+||+|+|+|++|..++.+.+++.
T Consensus 165 ~~~~~~~d~~~l~~~l~~~~aaviiEPv~~~gg~~~~~~~~l~~l~~l~~~~~~llI~DEv~tG~gr~G~~~~~~~~~v~ 244 (406)
T PRK12381 165 IRHAAYNDLNSASALIDDQTCAVIVEPIQGEGGVIPADKAFLQGLRELCDRHNALLIFDEVQTGVGRTGELYAYMHYGVT 244 (406)
T ss_pred eeEeCCCCHHHHHHhccCCeeEEEEeCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEcchhhCCCCCcchhhhHhhCCC
Confidence 46689999999 55555789999999999999988889999999999999999999999999999999987666778899
Q ss_pred CCEEEeeccccCCccchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhhc
Q psy6548 83 PDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELRSRL 162 (242)
Q Consensus 83 ~~~~~~sK~~~~g~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l~~~l 162 (242)
||++++||++++| +|+|++++++++++.+.+..+..|+++++++++++.++++.++.+++.++++++++++++.| +++
T Consensus 245 pDi~t~sK~l~gG-~~ig~~~~~~~~~~~~~~~~~~~t~~~~pl~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L-~~l 322 (406)
T PRK12381 245 PDVLTTAKALGGG-FPIGAMLTTEKCASVMTVGTHGTTYGGNPLASAVAGKVLELINTPEMLNGVKQRHDWFVERL-NTI 322 (406)
T ss_pred CCEEEehhhhhCC-CceEEEEEcHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHH-HHH
Confidence 9999999999999 99999999999999998877888999999999999999999887789999999999999999 666
Q ss_pred CC--CCCCeEeeeceeEEEEecCCc-hhHHHHHHHHHHCCceeccCCCCEEEEeccCcCCHHHHHHHHHHHHHHHHHHhh
Q psy6548 163 SP--DIVPVVRGKGLLNAIVLDKSI-LEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINTMAA 239 (242)
Q Consensus 163 ~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~gi~~~~~~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~~~ 239 (242)
.. .....+++.|.+++++++.+. .....+.+.|+++||++.+.+++.+|++|++.+|++++++++++|+++++++.+
T Consensus 323 ~~~~~~~~~vrg~Gl~~~~~l~~~~~~~~~~~~~~l~~~Gv~v~~~g~~~lRl~p~~~~t~~~i~~~~~~l~~~l~~~~~ 402 (406)
T PRK12381 323 NARYGLFSEIRGLGLLIGCVLNAEYAGKAKQISQEAAKAGVMVLIAGPNVVRFAPALNISEEEITTGLDRFARACERFVS 402 (406)
T ss_pred HhhCCCEEEEecCeEEEEEEecCchhhHHHHHHHHHHHCCcEEeeCCCCEEEEeCCccCCHHHHHHHHHHHHHHHHHHHh
Confidence 42 233456678999999887641 246788999999999998877789999999999999999999999999998765
Q ss_pred h
Q psy6548 240 K 240 (242)
Q Consensus 240 ~ 240 (242)
+
T Consensus 403 ~ 403 (406)
T PRK12381 403 R 403 (406)
T ss_pred c
Confidence 4
No 9
>PLN02760 4-aminobutyrate:pyruvate transaminase
Probab=100.00 E-value=6.6e-38 Score=272.06 Aligned_cols=218 Identities=31% Similarity=0.529 Sum_probs=194.7
Q ss_pred CCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEEeeccccCCccc
Q psy6548 19 NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYP 98 (242)
Q Consensus 19 ~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~sK~~~~g~~~ 98 (242)
.+++++|++||+++++|.++|+++|+++|+++|++||+++|+||+++|||++|..++++++++.||+++++|++++||+|
T Consensus 258 ~~~iAAvI~EPv~g~gG~~~p~~~yl~~lr~lc~~~g~lLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlgK~lggG~~P 337 (504)
T PLN02760 258 PETIAAFIAEPVMGAGGVIPPPATYFEKIQAVLKKYDILFIADEVICAFGRLGTMFGCDKYNIKPDLVSLAKALSSAYMP 337 (504)
T ss_pred CCceEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEecchhhCCcccchhhHHHhcCCCCcEEEecccccCCccc
Confidence 46799999999999999999999999999999999999999999999999999988889999999999999999999679
Q ss_pred hheeEeChhhhhccCC-------CCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhhcCC-CCCCeE
Q psy6548 99 ISAVLADDEVMGTLVP-------GTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELRSRLSP-DIVPVV 170 (242)
Q Consensus 99 ~g~~~~~~~~~~~l~~-------~~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l~~~l~~-~~~~~~ 170 (242)
+|.+++++++++.+.+ ..+++||++||+++++++++++.++++++.++++++.+++++.| +.+.. ..+..+
T Consensus 338 igAv~~~~~i~d~~~~~~~~~~~~~h~~T~~gnPl~~Aaala~Le~i~~~~l~~~~~~~g~~l~~~L-~~l~~~~~v~~v 416 (504)
T PLN02760 338 IGAVLVSPEISDVIHSQSNKLGSFAHGFTYSGHPVSCAVALEALKIYKERNIPEHVNKIAPRFQDGI-KAFSGSPIIGEI 416 (504)
T ss_pred cceEeecHHHHhhhhcccccccCcccCCCCCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH-HHHhcCCCeeeE
Confidence 9999999999988753 25788999999999999999999998899999999999999999 66642 355678
Q ss_pred eeeceeEEEEecCCc----------hhHHHHHHHHHHCCceeccCCCCEEEEeccCcCCHHHHHHHHHHHHHHHHHHh
Q psy6548 171 RGKGLLNAIVLDKSI----------LEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINTMA 238 (242)
Q Consensus 171 ~~~~~~~~~~~~~~~----------~~~~~~~~~l~~~gi~~~~~~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~~ 238 (242)
.+.|.++.+++..+. .....+.+.|+++|+++.+.+ +.+|++|++.+|++|+++++++|++++.++.
T Consensus 417 rG~Gl~~gie~~~~~~~~~~~~~~~~~~~~i~~~~~~~Gvl~~~~g-~~lrl~Ppl~it~eeid~~~~~l~~al~~~~ 493 (504)
T PLN02760 417 RGTGLILGTEFVDNKSPNDPFPAEWGVGAYFGAECKKRGMLVRVAG-DNIMMSPPLIITPEEVDELISIYGKALKATE 493 (504)
T ss_pred EeCceEEEEEEecCCcccccccchhHHHHHHHHHHHhCCcEEEecC-CEEEEECCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 899999999886531 125568899999999998864 6799999999999999999999999998763
No 10
>PRK05965 hypothetical protein; Provisional
Probab=100.00 E-value=1.1e-37 Score=268.92 Aligned_cols=220 Identities=35% Similarity=0.576 Sum_probs=197.4
Q ss_pred CCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEEeeccccCCccch
Q psy6548 20 PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPI 99 (242)
Q Consensus 20 ~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~sK~~~~g~~~~ 99 (242)
+++++|++||+++.+|.++|+++|+++|+++|++||+++|+||+++|||++|..|+++++++.||+++++|+++|||+|+
T Consensus 214 ~~iAAvIvEPiqg~gG~~~p~~~yl~~lr~lc~~~gillI~DEV~tGfGRtG~~~a~~~~gv~PDiv~~gKgl~gG~~Pi 293 (459)
T PRK05965 214 DNVAAFFCEPIQGSGGVIVPPKGWLKAMREACRELGILFVADEVITGFGRTGPLFACEAEGVVPDLMTVAKGLTSGYVPM 293 (459)
T ss_pred CceEEEEEeccccCCCCccCCHHHHHHHHHHHHHcCCEEEEechhccCccCchhhhHhhcCCCCCeEEechhhccCCcce
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999996699
Q ss_pred heeEeChhhhhccCC-------CCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhhcCC-CCCCeEe
Q psy6548 100 SAVLADDEVMGTLVP-------GTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELRSRLSP-DIVPVVR 171 (242)
Q Consensus 100 g~~~~~~~~~~~l~~-------~~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l~~~l~~-~~~~~~~ 171 (242)
|.+++++++++.+.. ..+++||++||+++++++++++.++++++.++.+++.+++++.| +++.. .....+.
T Consensus 294 ~av~~~~~i~~~~~~~~~~~~~~~h~~T~~gnpl~~Aaa~a~L~~l~~~~l~~~~~~~g~~l~~~l-~~l~~~~~v~~vr 372 (459)
T PRK05965 294 GAVLMSDHVYQGIADGAGAAAPVGHGYTYSAHPVSAAVGLEVLRLYHEGGLLANGQKAGPRFAAGL-DALRAHPLVGDVR 372 (459)
T ss_pred eEEEEcHHHHHHHhccccccccccccCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH-HhhccCCCEEEEe
Confidence 999999999887643 25788999999999999999999999999999999999999999 66642 3456788
Q ss_pred eeceeEEEEecCCc----------hhHHHHHHHHHHCCceeccCCCCEEEEeccCcCCHHHHHHHHHHHHHHHHHHhhh
Q psy6548 172 GKGLLNAIVLDKSI----------LEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINTMAAK 240 (242)
Q Consensus 172 ~~~~~~~~~~~~~~----------~~~~~~~~~l~~~gi~~~~~~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~~~~ 240 (242)
+.|.++.+++..+. .....+.+.++++|+++.+.+.+.+|+.|++.+|++|+++++++|++++.++...
T Consensus 373 G~Gl~~gie~~~~~~~~~~~~~~~~~~~~i~~~~~~~Gll~~~~g~~~i~~~PpL~it~~ei~~~~~~l~~~l~~~~~~ 451 (459)
T PRK05965 373 GRGLLGALELVADKATKTPFDAALDPADRIFDRAYANGLVFRAFGDGVLGFAPALCCTEGEFDLIFERTRKTLDDVLAD 451 (459)
T ss_pred ecceEEEEEEeccccccCCCCchhHHHHHHHHHHHhCCeEEEecCCcEEEEECCCcCCHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999885421 1246788899999999998777889999999999999999999999999987554
No 11
>COG0161 BioA Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Coenzyme metabolism]
Probab=100.00 E-value=1.3e-37 Score=259.84 Aligned_cols=218 Identities=41% Similarity=0.720 Sum_probs=200.0
Q ss_pred CCEEEEEEcccccC-CCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEEeeccccCCccc
Q psy6548 20 PNICAFMVEPIQGE-AGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYP 98 (242)
Q Consensus 20 ~~~~~i~~e~~~~~-~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~sK~~~~g~~~ 98 (242)
++++++++||+..- +|.++|++.|+++++++|++||+++|+||+.+||||+|+.|+.+++++.||+++++|++++||+|
T Consensus 213 ~~IAAfI~EPv~g~agG~~~pp~~Yl~~vr~iC~ky~ILlI~DEV~tGFGRTG~~FA~e~~gi~PDi~~~aKGLT~GY~P 292 (449)
T COG0161 213 ETIAAFIVEPVVGGAGGMLVPPPGYLKRVREICDKYGILLIADEVATGFGRTGKMFACEHAGIVPDILCLAKGLTGGYLP 292 (449)
T ss_pred ccEEEEEecccccccCCcccCChHHHHHHHHHHHHcCcEEEeecceeCCCcCchhhhhhhcCCCCCeeeecccccccchh
Confidence 78999999998776 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hheeEeChhhhhccCCC-----CCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhh-cC-CCCCCeEe
Q psy6548 99 ISAVLADDEVMGTLVPG-----THGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELRSR-LS-PDIVPVVR 171 (242)
Q Consensus 99 ~g~~~~~~~~~~~l~~~-----~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l~~~-l~-~~~~~~~~ 171 (242)
+|.++.++++.+.+... .|++||++||+++++|++.|++++++++.++.+++..++.++| +. +. .....+++
T Consensus 293 l~a~l~~~~I~~~~~~~~~~~f~HG~TYsghPlacAaAla~L~i~e~e~l~~~~~~~~~~l~~~L-~~~l~~~p~VgdVR 371 (449)
T COG0161 293 LSAVLTSDRIYEAFSDGDAGAFMHGHTYSGNPLACAAALANLDILEEEDLLERVAEIGAYLQAGL-QAALADHPLVGDVR 371 (449)
T ss_pred hHhHhhhHHHHHHHhcccCCeeccCCccccCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH-HHhcccCCcEEEee
Confidence 99999999988877653 6899999999999999999999999999999999999999999 55 44 34677889
Q ss_pred eeceeEEEEecCCchh---------HHHHHHHHHHCCceeccCCCCEEEEeccCcCCHHHHHHHHHHHHHHHHHHhhh
Q psy6548 172 GKGLLNAIVLDKSILE---------VYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINTMAAK 240 (242)
Q Consensus 172 ~~~~~~~~~~~~~~~~---------~~~~~~~l~~~gi~~~~~~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~~~~ 240 (242)
+.|++..+++..+ .. ...+.+.++++|++++|. ++.+=++|++..|++|++++++++.+++++..+.
T Consensus 372 ~~Gli~~iElv~d-~~t~~~f~~~~~~~~~~~~~e~Gl~iRp~-g~~i~~~PPliit~~eid~l~~~l~~al~~~~~~ 447 (449)
T COG0161 372 GLGLIGAIELVAD-KATKTPFEARVGARVRAAALERGLLIRPL-GDVIYLMPPLIITREEIDELVDALREALDETLAD 447 (449)
T ss_pred ccceEEEEEEecc-cccccchhhhHHHHHHHHHHHCCeEEeec-CCEEEEcCCccCCHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999998887 33 567889999999999999 6689999999999999999999999999986553
No 12
>PLN00144 acetylornithine transaminase
Probab=100.00 E-value=4.4e-37 Score=260.22 Aligned_cols=230 Identities=38% Similarity=0.615 Sum_probs=203.2
Q ss_pred ccccCCCChhh--hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCC
Q psy6548 4 QFPVKSKQVPA--KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDV 81 (242)
Q Consensus 4 ~~~~~~~d~~~--~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~ 81 (242)
+..+|+||++. +.+..+++++|++||+++++|..+++++|+++|+++|++||+++|+||+|+||+++|.+++.+.+++
T Consensus 148 ~~~~~~~d~~~l~~~~~~~~~aavi~eP~q~~gg~~~~~~~~~~~l~~l~~~~g~llI~DEv~tg~gr~g~~~~~~~~~~ 227 (382)
T PLN00144 148 VTFVEYGNLEAARKLIQKGKTAAVFVEPVQGEGGIYPATKEFLQGLRALCDEAGALLVFDEVQCGLGRTGYLWAHEAYGV 227 (382)
T ss_pred eEEeCCCCHHHHHHhcCCCCeEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCccchHhhhhhcCC
Confidence 56789999998 4566678999999999999888888999999999999999999999999999999998777677899
Q ss_pred CCCEEEeeccccCCccchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhh
Q psy6548 82 RPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELRSR 161 (242)
Q Consensus 82 ~~~~~~~sK~~~~g~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l~~~ 161 (242)
.||+++|||++++| +|+|++++++++++.+.+..+..|++++|++++++.++++.++++++.++++++++++++.|++.
T Consensus 228 ~PDi~t~sK~l~~G-~pig~v~~~~~~~~~~~~~~~~~T~~~~pl~~aaa~a~l~~i~~~~~~~~~~~~g~~l~~~l~~~ 306 (382)
T PLN00144 228 EPDIMTLAKPLAGG-LPIGAVLVTEKVASAINPGDHGSTFAGGPLVCNAALAVLDKISKPGFLASVAKKGEYLRELLRRK 306 (382)
T ss_pred CCCEEEecccccCC-cceEEEEEcHHHHhccCCCCCCCCCCCCHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999 89999999999999998777889999999999999999999988889999999999999998333
Q ss_pred cCC-CCCCeEeeeceeEEEEecCCchhHHHHHHHHHHCCceeccCC-CCEEEEeccCcCCHHHHHHHHHHHHHHHHHH
Q psy6548 162 LSP-DIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPIS-NNIIRLSPALNITEQELREGLDIIINTINTM 237 (242)
Q Consensus 162 l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~-~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~ 237 (242)
+.. .....+.+.|+++|+++.. ....+.+.++++||.+.+.+ .+.+|++|++..+++++++++++|++++.++
T Consensus 307 ~~~~~~~~~vrg~G~~~~l~l~~---~~~~~~~~~~~~Gv~i~~~~~~~~lrl~p~~~~~~~~i~~~~~~l~~~l~~~ 381 (382)
T PLN00144 307 LGGNPHVKEVRGVGLLVGIQLDV---PAGPLVDACRDSGLLVLTAGKGDVVRLVPPLVISEAELEQAVEILADCLPAL 381 (382)
T ss_pred HhhCCCceeeecCceEEEEEecC---ccHHHHHHHHHCCeEEeecCCCCEEEEeCCCccCHHHHHHHHHHHHHHHHhc
Confidence 332 2345666799999999933 35789999999999999864 4899999999899999999999999998764
No 13
>PRK04073 rocD ornithine--oxo-acid transaminase; Provisional
Probab=100.00 E-value=4.8e-37 Score=261.88 Aligned_cols=227 Identities=44% Similarity=0.818 Sum_probs=198.7
Q ss_pred ccccCCCChhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCC
Q psy6548 4 QFPVKSKQVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVR 82 (242)
Q Consensus 4 ~~~~~~~d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~ 82 (242)
+..+||||+++ +...++++++|++||++|++|.+.++++++++|+++|++||+++|+||+|+||+++|..++.+..++.
T Consensus 168 ~~~~~~~d~~~l~~~i~~~~~~viiep~~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~g~g~~g~~~~~~~~~~~ 247 (396)
T PRK04073 168 IKKIPYGDLEALKAAITPNTAAFLVEPIQGEAGINIPPEGFLKAARELCKEENVLFIADEIQTGLGRTGKLFACDWDNVT 247 (396)
T ss_pred ceEeCCCCHHHHHHhcccCeEEEEEcCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEecchhCCCcCcHHHHhhhcCCC
Confidence 45789999998 55556789999999999999999999999999999999999999999999999998876666667889
Q ss_pred CCEEEeeccccCCccchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhhc
Q psy6548 83 PDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELRSRL 162 (242)
Q Consensus 83 ~~~~~~sK~~~~g~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l~~~l 162 (242)
||++++||++++|.+|+|++++++++++.+....+..++++++++++++.++|+.++++++.++.+++++++++.| +++
T Consensus 248 pdi~~~sK~lg~gg~~ig~~~~~~~i~~~~~~~~~~~t~~~~~~~~aaa~aaL~~~~~~~l~~~~~~~~~~l~~~L-~~l 326 (396)
T PRK04073 248 PDMYILGKALGGGVFPISCVAANRDILGVFTPGSHGSTFGGNPLACAVSIAALEVLEEEKLPERSLELGEYFKEQL-KEI 326 (396)
T ss_pred CCEEEecccccCCCCcceEEEEcHHHHhhhcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH-Hhh
Confidence 9999999999954389999999999999888767788999999999999999998877788899999999999999 666
Q ss_pred CCCCCCeEeeeceeEEEEecCCchhHHHHHHHHHHCCceeccCCCCEEEEeccCcCCHHHHHHHHHHHHHHH
Q psy6548 163 SPDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTI 234 (242)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~lR~~~~~~~t~e~i~~~~~~l~~~l 234 (242)
........++.|.+++++++. ...++.++|+++||++.+.+.+.+|++|++.+|+|++++++++|++++
T Consensus 327 ~~~~i~~~~~~g~~~~~~~~~---~~~~~~~~l~~~Gv~~~~~~~~~iRi~p~l~~t~e~i~~~~~~l~~~l 395 (396)
T PRK04073 327 DNPMIKEVRGRGLFIGVELNE---PARPYCEALKEEGLLCKETHETVIRFAPPLVITKEELDWAFEKIKAVL 395 (396)
T ss_pred cCCcccceecceEEEEEEecc---hHHHHHHHHHHCCeEEecCCCCEEEEECCcccCHHHHHHHHHHHHHHh
Confidence 433344556778899998864 367899999999999988777899999999999999999999998875
No 14
>PRK04612 argD acetylornithine transaminase protein; Provisional
Probab=100.00 E-value=8.9e-37 Score=259.82 Aligned_cols=235 Identities=37% Similarity=0.591 Sum_probs=208.1
Q ss_pred ccccCCCChhh--hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCC
Q psy6548 4 QFPVKSKQVPA--KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDV 81 (242)
Q Consensus 4 ~~~~~~~d~~~--~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~ 81 (242)
+..+||+|++. +.+..++++++++||+++++|.+.++++|+++|+++|++||+++|+||+|+|||++|..+....+++
T Consensus 168 ~~~~~~~d~~~l~~~~~~~~~aavi~eP~~~~gg~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~a~~~~~~ 247 (408)
T PRK04612 168 FRYVDFNDVEALEAAMAGGDVAAVMLEPIQGEGGVMPAAPGFLARVRALCDQHDALLVLDEIQCGMGRTGTLFAHWQEQV 247 (408)
T ss_pred ceEcCCCCHHHHHHhhCCCCEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCCchhhhhhcCC
Confidence 45689999998 4555679999999999999998888899999999999999999999999999999997666666788
Q ss_pred CCCEEEeeccccCCccchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhh
Q psy6548 82 RPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELRSR 161 (242)
Q Consensus 82 ~~~~~~~sK~~~~g~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l~~~ 161 (242)
.||++++||++++| +|+|++++++++++.+....+..||+++|++++++.++++.++++++.++++++.++++++| ++
T Consensus 248 ~pdi~t~~K~l~~G-~piga~~~~~~~~~~~~~~~~~~t~~~~p~~~aaa~a~L~~~~~~~l~~~~~~~g~~l~~~l-~~ 325 (408)
T PRK04612 248 TPDIVTLAKALGGG-FPIGAMLAGPKVAETMQFGAHGTTFGGNPLAAAVARVALRKLASPQIAANVARQSAALRAGL-EA 325 (408)
T ss_pred CCCEEEEcchhcCC-CceEEEEECHHHHhhhcCCCcCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH-HH
Confidence 99999999999999 99999999998888887777888999999999999999999988889999999999999999 66
Q ss_pred cCC--CCCCeEeeeceeEEEEecCC-chhHHHHHHHHHHCCceeccCCCCEEEEeccCcCCHHHHHHHHHHHHHHHHHHh
Q psy6548 162 LSP--DIVPVVRGKGLLNAIVLDKS-ILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINTMA 238 (242)
Q Consensus 162 l~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~gi~~~~~~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~~ 238 (242)
+.. .....+.+.|.++.+++..+ ...+..+.+.|.++|+++.+.+.+.+|+.|++..+++|+++++++|++++.++.
T Consensus 326 l~~~~~~i~~vrg~Gl~~~i~~~~~~~~~a~~i~~~l~~~Gvlv~~~g~~~lRl~Ppl~it~eeid~~l~~l~~~l~~~~ 405 (408)
T PRK04612 326 LNAEFGVFAQVRGRGLMLGAVLAPAHAGQAGAILDLAAEHGLLLLQAGPDVLRFVPALNLTDAELADGLARLRLALADYV 405 (408)
T ss_pred HHhhCCCeeeeeccceEEEEEecCchhhHHHHHHHHHHHCCeEEeeCCCCEEEEcCCccCCHHHHHHHHHHHHHHHHHHh
Confidence 642 35567889999999998642 134678899999999999988789999999999999999999999999999876
Q ss_pred hh
Q psy6548 239 AK 240 (242)
Q Consensus 239 ~~ 240 (242)
++
T Consensus 406 ~~ 407 (408)
T PRK04612 406 AQ 407 (408)
T ss_pred hc
Confidence 54
No 15
>PRK06058 4-aminobutyrate aminotransferase; Provisional
Probab=100.00 E-value=4.6e-37 Score=264.66 Aligned_cols=216 Identities=38% Similarity=0.658 Sum_probs=194.3
Q ss_pred CCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEEeeccccCCccc
Q psy6548 19 NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYP 98 (242)
Q Consensus 19 ~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~sK~~~~g~~~ 98 (242)
.+++++|++||+++++|.++|+++|+++|+++|++||+++|+||+++|||++|..++++++++.||+++++|++++| +|
T Consensus 217 ~~~iAavi~EPi~g~gG~~~p~~~yl~~lr~lc~~~gillI~DEV~tGfgRtG~~fa~~~~gv~PDiv~~gK~l~~G-~P 295 (443)
T PRK06058 217 ADNLAAVIIEPIQGEGGFIVPAEGFLPALLEWCRENGVVFIADEVQTGFARTGAWFACEHEGIVPDLITTAKGIAGG-LP 295 (443)
T ss_pred CCceEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcChhhhHHHhcCCCCCEEEEcccccCC-Cc
Confidence 47899999999999999999999999999999999999999999999999999888888899999999999999999 89
Q ss_pred hheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhhcC--CCCCCeEeeecee
Q psy6548 99 ISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELRSRLS--PDIVPVVRGKGLL 176 (242)
Q Consensus 99 ~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l~~~l~--~~~~~~~~~~~~~ 176 (242)
+|++++++++++.+.+..+++||++|+++++++.++++.++++++.++.+++++++++.| +++. ......+.+.|.+
T Consensus 296 i~av~~~~~i~~~~~~~~~~~T~~gnpl~~aaa~a~L~~~~~~~l~~~~~~~g~~l~~~L-~~l~~~~~~i~~vrg~G~~ 374 (443)
T PRK06058 296 LSAVTGRAEIMDAPHPGGLGGTYGGNPVACAAALAAIETIEEDDLVARARQIEALMTDRL-RALAAEDDRIGDVRGRGAM 374 (443)
T ss_pred cEEEEEcHHHHhhccCCCCCCCCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHH-HHHHhhCCcEEeeeccceE
Confidence 999999999999888777889999999999999999999988899999999999999999 6653 2455667899999
Q ss_pred EEEEecCCc------hhHHHHHHHHHHCCceeccCC--CCEEEEeccCcCCHHHHHHHHHHHHHHHHH
Q psy6548 177 NAIVLDKSI------LEVYDVCIKMKDAGLVTKPIS--NNIIRLSPALNITEQELREGLDIIINTINT 236 (242)
Q Consensus 177 ~~~~~~~~~------~~~~~~~~~l~~~gi~~~~~~--~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~ 236 (242)
+.+++..+. .....+.+.|+++|+++.+.+ ++.+|+.|++.+|++++++++++|++++++
T Consensus 375 ~~i~~~~~~~~~~~~~~~~~l~~~~~~~Gv~~~~~~~~~~~lr~~Ppl~~t~~~i~~~~~~l~~~l~~ 442 (443)
T PRK06058 375 IAIELVKPGTTEPDAELTKALAAAAHAAGVIVLTCGTYGNVIRLLPPLVIGDELLREGLDVLEAALAD 442 (443)
T ss_pred EEEEEecCCCCCCcHHHHHHHHHHHHHCCeEEeccCCCCCEEEEECCCccCHHHHHHHHHHHHHHHHh
Confidence 999885421 235678888999999998754 479999999999999999999999999875
No 16
>PRK01278 argD acetylornithine transaminase protein; Provisional
Probab=100.00 E-value=6.4e-37 Score=260.70 Aligned_cols=227 Identities=41% Similarity=0.675 Sum_probs=199.5
Q ss_pred cccCCCChhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCC
Q psy6548 5 FPVKSKQVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRP 83 (242)
Q Consensus 5 ~~~~~~d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~ 83 (242)
..+||+|+++ +...++++++|++||+++++|..+++++++++|+++|++||+++|+||+|+||+++|..+..+.+++.|
T Consensus 158 ~~~~~~d~~~l~~~l~~~~~avivep~~~~~G~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~~g~~~~~~~~~~~p 237 (389)
T PRK01278 158 DQVPFGDIEALKAAITPNTAAILIEPIQGEGGIRPAPDEFLKGLRQLCDENGLLLIFDEVQCGMGRTGKLFAHEWAGVTP 237 (389)
T ss_pred eEeCCCCHHHHHHhhCCCeEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCCcceeecccCCCC
Confidence 3578899999 555556899999999999999899999999999999999999999999999999988766666778899
Q ss_pred CEEEeeccccCCccchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhhcC
Q psy6548 84 DIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELRSRLS 163 (242)
Q Consensus 84 ~~~~~sK~~~~g~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l~~~l~ 163 (242)
|++++||++++| +|+||+++++++++.+....+..+++.|+++++++.++++.++++++.+++++++++++++| +.+.
T Consensus 238 di~t~sK~l~~G-~~ig~~~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~l-~~l~ 315 (389)
T PRK01278 238 DIMAVAKGIGGG-FPLGACLATEEAAKGMTPGTHGSTYGGNPLAMAVGNAVLDVILAPGFLDNVQRMGLYLKQKL-EGLV 315 (389)
T ss_pred CEEEEehhccCC-cceEEEEEcHHHHhccCCCCCCCCCCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH-HHHH
Confidence 999999999999 99999999999999988877888999999999999999998877778889999999999999 5543
Q ss_pred C--C-CCCeEeeeceeEEEEecCCchhHHHHHHHHHHCCceeccCCCCEEEEeccCcCCHHHHHHHHHHHHHHHHH
Q psy6548 164 P--D-IVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINT 236 (242)
Q Consensus 164 ~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~ 236 (242)
. . +...+.+.|.++++++.. +..++++.|+++||.+.|++.+.+||+|++.++++++++++++|++++.+
T Consensus 316 ~~~~~~~~~v~g~G~~~~i~~~~---~~~~~~~~l~~~GV~~~p~~~~~lR~~p~~~~~~~~i~~~l~~l~~~l~~ 388 (389)
T PRK01278 316 DRFPDVIEEVRGKGLLLGLKCVV---PNRDLVQALRDEGLLTVGAGDNVVRLLPPLIITEEEIDEALERLERAAES 388 (389)
T ss_pred hhCCCceeeEecccEEEEEEEec---CHHHHHHHHHHCCeEEeecCCCEEEEeCCcccCHHHHHHHHHHHHHHHHh
Confidence 1 2 344566778888888754 46789999999999999988899999999999999999999999998865
No 17
>PRK06938 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional
Probab=100.00 E-value=3.9e-37 Score=265.45 Aligned_cols=217 Identities=29% Similarity=0.464 Sum_probs=193.7
Q ss_pred CCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEEeeccccCCccch
Q psy6548 20 PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPI 99 (242)
Q Consensus 20 ~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~sK~~~~g~~~~ 99 (242)
+++++|++||+++.+|.++|+++|+++++++|++||+++|+||+++|||++|..++++++++.||+++++|+++|| +|+
T Consensus 230 ~~iAAvI~EPiqg~gG~~~p~~~yl~~lr~lc~~~giLlI~DEV~tGfGRtG~~~a~e~~gv~PDiv~~gKglggG-~Pl 308 (464)
T PRK06938 230 VLPAAVILEVVQGEGGVIPAPIEWLRGLRRITEEAGIPLIVDEIQSGFGRTGKMFAFEHAGIIPDVVVLSKAIGGS-LPL 308 (464)
T ss_pred CceEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCcHHHHHHhcCCCCCEEEeeccccCC-Cce
Confidence 3799999999999999999999999999999999999999999999999999988999999999999999999999 899
Q ss_pred heeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhhcC--CCCCCeEeeeceeE
Q psy6548 100 SAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELRSRLS--PDIVPVVRGKGLLN 177 (242)
Q Consensus 100 g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l~~~l~--~~~~~~~~~~~~~~ 177 (242)
|.+++++++ +.+.+..+++||++||+++++++++++.++++++.++.+++.+++++.| +++. ......+.+.|.++
T Consensus 309 sAv~~~~~~-~~~~~~~~~~T~~gnpla~Aaa~a~L~~l~~~~l~~~~~~~G~~l~~~L-~~l~~~~~~i~~VrG~Glm~ 386 (464)
T PRK06938 309 AVVVYREWL-DTWQPGAHAGTFRGNQMAMAAGSATLRYIKEHRLAEHAAAMGERLREHL-RQLQRDYPQLGDVRGRGLML 386 (464)
T ss_pred EEEeehhHh-hccCCCCCCCCCCcCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH-HHHHHhCCCeeeeeccceEE
Confidence 999998775 6666667889999999999999999999988889999999999999999 6653 24567889999999
Q ss_pred EEEecCCc-------------hhHHHHHHHHHHCCceeccCC--CCEEEEeccCcCCHHHHHHHHHHHHHHHHHHhh
Q psy6548 178 AIVLDKSI-------------LEVYDVCIKMKDAGLVTKPIS--NNIIRLSPALNITEQELREGLDIIINTINTMAA 239 (242)
Q Consensus 178 ~~~~~~~~-------------~~~~~~~~~l~~~gi~~~~~~--~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~~~ 239 (242)
.+++..+. .....+.+.|+++|+++.+.+ .+.+||.|++.+|++|++++++++++++.++..
T Consensus 387 gie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gll~~~~g~~~~~l~~~Ppl~it~~eid~~~~~l~~~l~~~~~ 463 (464)
T PRK06938 387 GVEIVDPQGEPDALGHPPANGELASLIQRECLRRGLILELGGRHGSVVRFLPPLIITAEQIDEVAEIFAEAVAAAVA 463 (464)
T ss_pred EEEeccCcccccccccCCccHHHHHHHHHHHHHCCeEEeecCCCCCEEEEECCCccCHHHHHHHHHHHHHHHHHHhc
Confidence 99985421 124568889999999998754 578999999999999999999999999988654
No 18
>PRK03715 argD acetylornithine transaminase protein; Provisional
Probab=100.00 E-value=6.6e-37 Score=259.95 Aligned_cols=226 Identities=33% Similarity=0.585 Sum_probs=196.2
Q ss_pred cCCCChhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCE
Q psy6548 7 VKSKQVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDI 85 (242)
Q Consensus 7 ~~~~d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~ 85 (242)
+||||+++ +...++++++|++||+++++|.++|+++|+++|+++|++||+++|+||+|+|||++|..++++++++.||+
T Consensus 164 ~~~~d~~~l~~~l~~~~aavi~Epv~~~gG~~~~~~~~l~~l~~l~~~~~~llI~DEv~tG~GRtG~~~a~~~~gv~PDi 243 (395)
T PRK03715 164 AELNDIASVEKLITDKTVAVMLEPVQGEGGVIPATREFMQQLRALTKQHGLLLIVDEVQTGCGRTGTLFAYELSGIEPDI 243 (395)
T ss_pred eCCchHHHHHHHcCCCceEEEEeCCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCCCcchhhHhhcCCCCce
Confidence 46799988 55445689999999999999999999999999999999999999999999999999998888899999999
Q ss_pred EEeeccccCCccchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhhcCC-
Q psy6548 86 VILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELRSRLSP- 164 (242)
Q Consensus 86 ~~~sK~~~~g~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l~~~l~~- 164 (242)
+++||++++| +|+|.++++++++. +.+..+++||+++|+++++++++++.++++++.++++++.+++++.| +++..
T Consensus 244 ~t~gK~lg~G-~p~~av~~~~~i~~-~~~~~~~~T~~g~pl~~aaala~L~~l~~~~l~~~~~~~g~~l~~~L-~~l~~~ 320 (395)
T PRK03715 244 MTLGKGIGGG-VPLAALLAKAEVAV-FEAGDQGGTYNGNPLMTAVGVAVISQLLAPGFLEGVRARGEYLKEKL-LELSEE 320 (395)
T ss_pred eeehhhhhCC-cceEEEEEcccccc-ccCCCcCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH-HHHhhc
Confidence 9999999999 89999999988863 34445788999999999999999999988889999999999999999 66532
Q ss_pred CCCCeEeeeceeEEEEecCCchhHHHHHHHHHHC---CceeccCCCCEEEEeccCcCCHHHHHHHHHHHHHHHHHH
Q psy6548 165 DIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDA---GLVTKPISNNIIRLSPALNITEQELREGLDIIINTINTM 237 (242)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---gi~~~~~~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~ 237 (242)
.....+.+.|+++.+++..+ ....+.+.+.+. |+++.+...+.+||+|++.+|++|+++++++|+++++++
T Consensus 321 ~~i~~vrG~Glm~~i~l~~~--~~~~~~~~~~~~~~~Gi~~~~~~~~~lR~~p~l~~t~~ei~~~~~~l~~~l~~~ 394 (395)
T PRK03715 321 RGLEGERGEGLLRALLLGKD--IGPQIVEKARDMQPDGLLLNAPRPNLLRFMPALNVTTEEIDQMIAMLRSVLDKL 394 (395)
T ss_pred CCcCeEEcceeEEEEEecCc--hHHHHHHHHHhccCCCEEEeecCCCEEEEeCCcccCHHHHHHHHHHHHHHHHhh
Confidence 11345678899999999764 344555566665 999987767899999999999999999999999999875
No 19
>PRK07678 aminotransferase; Validated
Probab=100.00 E-value=5.4e-37 Score=264.29 Aligned_cols=219 Identities=33% Similarity=0.583 Sum_probs=192.7
Q ss_pred CCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEEeeccccCCccc
Q psy6548 19 NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYP 98 (242)
Q Consensus 19 ~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~sK~~~~g~~~ 98 (242)
.+++++||+||+++.+|.++|+++|+++++++|++||+++|+||+++|||++|..+.++++|+.||+++++|+++||++|
T Consensus 211 ~~~iAAvi~EPiqg~gG~~~~~~~fl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~~~~~~gv~PDivt~gK~lggG~~P 290 (451)
T PRK07678 211 SETIAAVIMEPIITGGGVLMPPQDYMKAVKEICQKHGALLISDEVICGFGRTGKAFGFMNYGVKPDIITMAKGITSAYLP 290 (451)
T ss_pred CCceEEEEEccccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhcCCcCchhHHHHhcCCCCCEEEeecccccCCcc
Confidence 46899999999999999999999999999999999999999999999999999888888899999999999999988679
Q ss_pred hheeEeChhhhhccCC------CCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhhcC-CCCCCeEe
Q psy6548 99 ISAVLADDEVMGTLVP------GTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELRSRLS-PDIVPVVR 171 (242)
Q Consensus 99 ~g~~~~~~~~~~~l~~------~~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l~~~l~-~~~~~~~~ 171 (242)
+|.+++++++++.+.+ ..+++||++||+++++++++++.++++++.++++++.+++++.|++.+. ......+.
T Consensus 291 i~av~~~~~i~~~~~~~~~~~~~~h~~T~~gnp~~~aaa~a~l~~l~~~~~~~~~~~~g~~l~~~l~~~~~~~~~v~~vr 370 (451)
T PRK07678 291 LSATAVKKEIYEAFKGKGEYEHFRHVNTFGGNPAACALALKNLEIMENENLIERSAQLGELLLEQLKEELGEHPLVGDIR 370 (451)
T ss_pred eeEEEEcHHHHHHHhccCcccccccCCCCCcCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCEEEEE
Confidence 9999999999887754 2478999999999999999999998888999999999999999933333 23556788
Q ss_pred eeceeEEEEecCCc--------hhHHHHHHHHHHCCceeccCC------CCEEEEeccCcCCHHHHHHHHHHHHHHHHHH
Q psy6548 172 GKGLLNAIVLDKSI--------LEVYDVCIKMKDAGLVTKPIS------NNIIRLSPALNITEQELREGLDIIINTINTM 237 (242)
Q Consensus 172 ~~~~~~~~~~~~~~--------~~~~~~~~~l~~~gi~~~~~~------~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~ 237 (242)
+.|.++.+++..+. .....+...|+++|+++.+.+ .+.+|++|++.+|++||+++++++++++.++
T Consensus 371 g~Gl~~~i~~~~~~~~~~~~~~~~a~~i~~~l~~~Gv~~~~~g~~v~~~~~~lrl~Ppl~it~~eid~~~~~l~~~l~~~ 450 (451)
T PRK07678 371 GKGLLVGIELVNDKETKEPADNDKVASVVAACKEKGLIIGKNGDTVAGYNNVLTLSPPLVISSEEIAFIVGTLKTALERI 450 (451)
T ss_pred eeceEEEEEEecCCcccCcCchHHHHHHHHHHHHCCcEEeecCccccCCCCEEEEECCCcCCHHHHHHHHHHHHHHHHhc
Confidence 99999999985321 235678899999999997642 3789999999999999999999999999865
No 20
>PRK07481 hypothetical protein; Provisional
Probab=100.00 E-value=5.1e-37 Score=264.27 Aligned_cols=218 Identities=33% Similarity=0.563 Sum_probs=193.8
Q ss_pred CCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEEeeccccCCccc
Q psy6548 19 NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYP 98 (242)
Q Consensus 19 ~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~sK~~~~g~~~ 98 (242)
.+++++|++||+++.+|.++|+++|+++++++|++||+++|+||+++|||++|..++++++++.||+++++|++++||+|
T Consensus 211 ~~~iAAviiEPvqg~gG~~~~~~~fl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~a~~~~gv~PDiv~~gKgl~gG~~P 290 (449)
T PRK07481 211 PDTIAAFIAEPVQGAGGVIVPPANFWPLVREVCDRHGILLIADEVVTGFGRTGSWFGSRGWGVKPDIMCLAKGITSGYVP 290 (449)
T ss_pred CCcEEEEEEecccCCcCCccCCHHHHHHHHHHHHHcCCEEEEeehhhCcCcCchhhHhhhcCCCCCEEEEeecccCCCcC
Confidence 46899999999999999999999999999999999999999999999999999988888999999999999999999669
Q ss_pred hheeEeChhhhhccCC-------CCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhhcCC--CCCCe
Q psy6548 99 ISAVLADDEVMGTLVP-------GTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELRSRLSP--DIVPV 169 (242)
Q Consensus 99 ~g~~~~~~~~~~~l~~-------~~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l~~~l~~--~~~~~ 169 (242)
+|.+++++++++.+.+ ..+++||++||+++++++++++.++++++.++.+++.+++++.| +++.. .....
T Consensus 291 i~av~~~~~i~~~~~~~~~~~~~~~h~~T~~gnpl~~aaa~a~L~~l~~~~l~~~~~~~g~~l~~~L-~~l~~~~~~i~~ 369 (449)
T PRK07481 291 LGATMVNARIADAFEANADFGGAIMHGYTYSGHPVACAAALATLDIVVREDLPANAAKRGAYLLEGL-QPLKERFELVGD 369 (449)
T ss_pred ceEEEEcHHHHHHHhccCccccccccCCCCCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH-HHHhhcCCCeEE
Confidence 9999999999887753 25788999999999999999999988889999999999999999 66542 45677
Q ss_pred EeeeceeEEEEecCCc----------hhHHHHHHHHHHCCceeccCCCCEEEEeccCcCCHHHHHHHHHHHHHHHHHHh
Q psy6548 170 VRGKGLLNAIVLDKSI----------LEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINTMA 238 (242)
Q Consensus 170 ~~~~~~~~~~~~~~~~----------~~~~~~~~~l~~~gi~~~~~~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~~ 238 (242)
+.+.|.++.+++..+. .....+.+.|+++|+++.+.+ +.+|++|++.+|++|+++++++|+++++++.
T Consensus 370 vrG~Glm~gi~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Gvl~~~~g-~~i~l~Ppl~it~~eid~~~~~l~~~l~~~~ 447 (449)
T PRK07481 370 VRGKGLMLALDLVADKATREPIDPSKGYANAVADVARENGVLVRPSG-TKIILSPPLVIQREDVDRIVDALDAGLSAVP 447 (449)
T ss_pred EeecceEEEEEecccccccCCCCchhHHHHHHHHHHHhCCeEEEecC-CEEEEECCCCCCHHHHHHHHHHHHHHHHhcc
Confidence 8899999999985321 134578888999999998874 4699999999999999999999999998754
No 21
>PRK05093 argD bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein; Reviewed
Probab=100.00 E-value=1.2e-36 Score=259.90 Aligned_cols=233 Identities=36% Similarity=0.585 Sum_probs=203.1
Q ss_pred cccccCCCChhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCC
Q psy6548 3 LQFPVKSKQVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDV 81 (242)
Q Consensus 3 ~~~~~~~~d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~ 81 (242)
.+..+||||++. +...++++++|++||+++++|..+|+++++++|+++|++||+++|+||+|+|++++|.+++...+++
T Consensus 165 ~~~~~~~~d~~~l~~~l~~~~aaiiiep~~~~gg~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~~g~~~~~~~~~~ 244 (403)
T PRK05093 165 DITHVPFNDLAAVKAVIDDHTCAVVVEPIQGEGGVIPATPEFLQGLRELCDQHNALLIFDEVQTGMGRTGDLFAYMHYGV 244 (403)
T ss_pred CcEEeCCCCHHHHHHHhcCCeEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCccchhhhhcCC
Confidence 357789999999 5544568999999999999998888999999999999999999999999999998887666567788
Q ss_pred CCCEEEeeccccCCccchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhh
Q psy6548 82 RPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELRSR 161 (242)
Q Consensus 82 ~~~~~~~sK~~~~g~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l~~~ 161 (242)
.||+.+|||++++| +|+||+++++++++.+....+..+++++++.++++.++++.+..+++.++++++++++++.| +.
T Consensus 245 ~pdi~s~sK~l~~G-~rig~vv~~~~i~~~l~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~L-~~ 322 (403)
T PRK05093 245 TPDILTSAKALGGG-FPIGAMLTTAEIASHFKVGTHGSTYGGNPLACAVAEAVFDIINTPEVLEGVKARRQRFVDGL-QK 322 (403)
T ss_pred CCCEEEecccccCC-cceEEEEEcHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHH-HH
Confidence 99999999999999 99999999999999988766778889999999999999998877788899999999999999 66
Q ss_pred cCC--CCCCeEeeeceeEEEEecCCc-hhHHHHHHHHHHCCceeccCCCCEEEEeccCcCCHHHHHHHHHHHHHHHHHH
Q psy6548 162 LSP--DIVPVVRGKGLLNAIVLDKSI-LEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINTM 237 (242)
Q Consensus 162 l~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~gi~~~~~~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~ 237 (242)
+.. .....+++.|.++|+.++... .+..++++.|+++||++.+.+.+.+|++|++.++++++++++++|++++.++
T Consensus 323 ~~~~~~~~~~~~~~G~~~~~~l~~~~~~~~~~~~~~l~~~Gv~v~~~g~~~lRl~~~~~~~~~~i~~~~~~l~~~l~~~ 401 (403)
T PRK05093 323 INQKYGVFSEIRGMGLLIGAELKPQYKGRARDFLNAAAEEGVMVLVAGPDVLRFAPSLVIEEADIDEGLARFEKAVAKV 401 (403)
T ss_pred HHhhCCCeEeEeeCceEEEEEecCcchhHHHHHHHHHHHCCeEEecCCCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 542 233456677899999987541 2567899999999999998877899999999999999999999999998764
No 22
>PRK07482 hypothetical protein; Provisional
Probab=100.00 E-value=1.1e-36 Score=262.79 Aligned_cols=219 Identities=30% Similarity=0.534 Sum_probs=193.5
Q ss_pred CCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEEeeccccCCccc
Q psy6548 19 NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYP 98 (242)
Q Consensus 19 ~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~sK~~~~g~~~ 98 (242)
.+++++|++||+++.+|.++|+++|+++|+++|++||+++|+||+++|||++|..++++++|+.||+++++|+++|||+|
T Consensus 218 ~~~iAAvi~EPvqg~gG~~~~~~~yl~~lr~lc~~~giLlI~DEV~tGfGRtG~~~a~~~~gv~PDiv~~gKgl~gG~~P 297 (461)
T PRK07482 218 PDTIAAFIAEPVLGTGGIVPPPAGYWPAIQAVLKKYDILLIADEVVTGFGRLGSMFGSDHYGIEPDLITVAKGLTSAYAP 297 (461)
T ss_pred CCcEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHhCCEEEEeccccCCCcCcchhhHHhcCCCCCEEEEccccccCccc
Confidence 36799999999999999999999999999999999999999999999999999999999999999999999999999569
Q ss_pred hheeEeChhhhhccCC-------CCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhhcC--CCCCCe
Q psy6548 99 ISAVLADDEVMGTLVP-------GTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELRSRLS--PDIVPV 169 (242)
Q Consensus 99 ~g~~~~~~~~~~~l~~-------~~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l~~~l~--~~~~~~ 169 (242)
+|.+++++++++.+.. ..+++||++||++++++.++++.++++++.++.+++.+++++.| +++. ...+..
T Consensus 298 i~av~~~~~i~~~~~~~~~~~~~~~h~~T~~gnpl~~Aaa~a~L~~~~~~~l~~~~~~~g~~l~~~L-~~l~~~~~~v~~ 376 (461)
T PRK07482 298 LSGSIVGEKVWDVLEQGSDEHGAIGHGWTYSGHPICAAAALANLDILERENLVGNAAEVGAYFRARL-RAAFGDHPLVGE 376 (461)
T ss_pred cceeeecHHHHHHHhcccccCCccccCCCCCcCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH-HHHHhcCCCEEE
Confidence 9999999998876642 24788999999999999999999999999999999999999999 5543 245567
Q ss_pred EeeeceeEEEEecCCc----------hhHHHHHHHHHHCCceeccC-CCCEEEEeccCcCCHHHHHHHHHHHHHHHHHHh
Q psy6548 170 VRGKGLLNAIVLDKSI----------LEVYDVCIKMKDAGLVTKPI-SNNIIRLSPALNITEQELREGLDIIINTINTMA 238 (242)
Q Consensus 170 ~~~~~~~~~~~~~~~~----------~~~~~~~~~l~~~gi~~~~~-~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~~ 238 (242)
+.+.|.++.+++..+. .....+...|+++|+++.+. +++.+|+.|++.+|++|+++++++|++++.++.
T Consensus 377 vrG~Glm~giel~~~~~~~~~~~~~~~~~~~i~~~~~~~Gvl~~~~~~~~~i~~~Ppl~it~~ei~~~~~~l~~~l~~~~ 456 (461)
T PRK07482 377 VRGVGMLAAVEFVADRDDRTPFDPALKIGPQVSAAALERGVIARAMPHGDILGFAPPLVLTRAEADEIVAIAKDAVDEVL 456 (461)
T ss_pred EeeceeEEEEEeccCCCcCCCCChhhHHHHHHHHHHHHCCcEEecCCCCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 8899999999986421 02467889999999998653 357899999999999999999999999998763
No 23
>PRK06062 hypothetical protein; Provisional
Probab=100.00 E-value=1e-36 Score=262.33 Aligned_cols=218 Identities=35% Similarity=0.591 Sum_probs=192.9
Q ss_pred CCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEEeeccccCCccch
Q psy6548 20 PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPI 99 (242)
Q Consensus 20 ~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~sK~~~~g~~~~ 99 (242)
+++++|++||+++++|.++|+++|+++|+++|++||+++|+||+++|||++|..|+++++++.||+++++|++++||+|+
T Consensus 213 ~~iAaviiEPv~g~gG~~~p~~~yl~~lr~lc~~~g~lLI~DEV~tGfGRtG~~~a~~~~gv~PDi~t~gK~lggG~~Pi 292 (451)
T PRK06062 213 STIAAILLESVPGTAGILVPPPGYLAGVRELCDRHGIVLIADEVMAGFGRTGKWFAIEHFGVVPDLITFAKGVNSGYVPL 292 (451)
T ss_pred CceEEEEEccccCCCCcccCCHHHHHHHHHHHHHcCCEEEeeccccCCCcCcHHHHHHhcCCCCCeeeechhhhcCCcCc
Confidence 68999999999999999999999999999999999999999999999999999888899999999999999999996699
Q ss_pred heeEeChhhhhccCCC--CCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHH-HHHHHHHHhhcCC--CCCCeEeeec
Q psy6548 100 SAVLADDEVMGTLVPG--THGSTYGGNPLACKLAMTALDVILEENMIENAYKMG-EIFRSELRSRLSP--DIVPVVRGKG 174 (242)
Q Consensus 100 g~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~-~~l~~~l~~~l~~--~~~~~~~~~~ 174 (242)
|.+++++++++.+... .+++||++||+++++++++|+.++++++.++.+++. .++++.| +++.. .....+.+.|
T Consensus 293 gav~~~~~i~~~~~~~~~~~~~T~~gnpl~~Aaa~a~L~~l~~~~l~~~~~~~G~~~l~~~L-~~l~~~~~~v~~vrG~G 371 (451)
T PRK06062 293 GGVAISEAIAATFADRPYPGGLTYSGHPLACAAAVATINAMEEEGIVENAARIGAEVLGPGL-RELAERHPSVGEVRGLG 371 (451)
T ss_pred EEEEEcHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH-HHHHhcCCcEEeEeccc
Confidence 9999999999888643 477899999999999999999998888999999998 5899999 66532 3455788899
Q ss_pred eeEEEEecCCc-------------hhHHHHHHHHHHCCceeccCCCCEEEEeccCcCCHHHHHHHHHHHHHHHHHHhh
Q psy6548 175 LLNAIVLDKSI-------------LEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINTMAA 239 (242)
Q Consensus 175 ~~~~~~~~~~~-------------~~~~~~~~~l~~~gi~~~~~~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~~~ 239 (242)
.++.+++..+. .....+.+.|+++|+++.+. .+.+|++|++.+|++|+++++++|++++.++..
T Consensus 372 l~~gve~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gvl~~~~-~~~lrl~ppl~~t~~eid~~~~~l~~~l~~~~~ 448 (451)
T PRK06062 372 VFWALELVADRETREPLAPYGASSAAMAAVKAACKERGLLPFVN-GNRIHVVPPCTVTEDEVREGLAILDAALAVADA 448 (451)
T ss_pred cEEEEEEcccccccCCCcccchhhHHHHHHHHHHHHCCcEEeec-CCEEEEECCccCCHHHHHHHHHHHHHHHHHhhh
Confidence 99999885321 02457899999999998875 578999999999999999999999999988653
No 24
>PRK07986 adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated
Probab=100.00 E-value=9.2e-37 Score=260.66 Aligned_cols=226 Identities=32% Similarity=0.549 Sum_probs=198.6
Q ss_pred CCCChhh--hcCC--CCCEEEEEEccc-ccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCC
Q psy6548 8 KSKQVPA--KLKS--NPNICAFMVEPI-QGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVR 82 (242)
Q Consensus 8 ~~~d~~~--~~~~--~~~~~~i~~e~~-~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~ 82 (242)
++||+++ +.+. .+++++|++||+ ++.+|.++|+++||++|+++|++||+++|+||+|+|||++|.+++.+++++.
T Consensus 187 ~~~d~~~l~~~l~~~~~~iaavi~Epi~~g~gg~~~~~~~~L~~l~~lc~~~g~lLI~DEv~tG~GrtG~~fa~~~~gv~ 266 (428)
T PRK07986 187 DERDIAPFARLMAAHRHEIAAVILEPIVQGAGGMRIYHPEWLKRVRKLCDREGILLIADEIATGFGRTGKLFACEHAGIA 266 (428)
T ss_pred HHHHHHHHHHHHHhCCCcEEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCCccCCCeeeecccCCC
Confidence 3567776 3343 468999999996 8888888999999999999999999999999999999999998888899999
Q ss_pred CCEEEeeccccCCccchheeEeChhhhhccCCC-----CCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Q psy6548 83 PDIVILGKALSGGLYPISAVLADDEVMGTLVPG-----THGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSE 157 (242)
Q Consensus 83 ~~~~~~sK~~~~g~~~~g~~~~~~~~~~~l~~~-----~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~ 157 (242)
||++++||+++|||+++|.+++++++++.+... .+++||++||+++++++++++.++++++.++++++.+++++.
T Consensus 267 PDi~t~gK~l~gG~~p~~av~~~~~i~~~~~~~~~~~~~~~~T~~g~p~~~aaa~a~L~~i~~~~~~~~~~~~g~~l~~~ 346 (428)
T PRK07986 267 PDILCLGKALTGGTMTLSATLTTREVAETISNGEAGCFMHGPTFMGNPLACAVANASLSLLESGDWQQQVAAIEAQLREE 346 (428)
T ss_pred CCEEEechhhhCCcccCcchhchHHHHHHhhcCCCCccccCCCCCcCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 999999999999977999999999999888653 377899999999999999999998888999999999999999
Q ss_pred HHhhcC-CCCCCeEeeeceeEEEEecCCchhHHHHHHHHHHCCceeccCCCCEEEEeccCcCCHHHHHHHHHHHHHHHHH
Q psy6548 158 LRSRLS-PDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINT 236 (242)
Q Consensus 158 l~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~ 236 (242)
| +.+. ......+.+.|.++.+++..+ .....+.+.|+++|+++.+.+ +.+|++|++..|++|+++++++|++++++
T Consensus 347 l-~~l~~~~~i~~vRg~Gl~~~ve~~~~-~~~~~~~~~l~~~Gl~~~~~g-~~i~~~Ppl~it~~ei~~~~~~l~~~l~~ 423 (428)
T PRK07986 347 L-APLRDAPMVADVRVLGAIGVVETTRP-VNMAALQRFFVEQGVWIRPFG-KLIYLMPPYIILPEQLQRLTAAVNRAVQD 423 (428)
T ss_pred H-HHHhcCCCEEeEeccceEEEEEeCCc-ccHHHHHHHHHHCCcEEEecC-CEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Confidence 9 6663 234456788899999999765 456789999999999998874 68999999999999999999999998864
No 25
>PRK06943 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=100.00 E-value=3.5e-36 Score=259.01 Aligned_cols=218 Identities=30% Similarity=0.506 Sum_probs=194.0
Q ss_pred CCCEEEEEEcc-cccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEEeeccccCCcc
Q psy6548 19 NPNICAFMVEP-IQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLY 97 (242)
Q Consensus 19 ~~~~~~i~~e~-~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~sK~~~~g~~ 97 (242)
.+++++|++|| +++.+|.++|+++|+++++++|++||+++|+||+++|||++|..|+++++++.||+++++|+++|||+
T Consensus 219 ~~~iAAviiEPvvqg~gG~~~~~~~yl~~lr~lc~~~gillI~DEV~TG~GRtG~~fa~~~~gv~PDivt~gKgl~gG~~ 298 (453)
T PRK06943 219 AGKIAALIVEPLVQCAAGMAMHDPSYLRGLRALCDRYGVHLIADEIAVGCGRTGTFFACEQAGVWPDFLCLSKGISGGYL 298 (453)
T ss_pred CCceEEEEEeccccccCCcccCCHHHHHHHHHHHHHcCCEEEeechhhCCCCCcchhHHHhCCCCCCeEeeehhhccCcc
Confidence 47899999999 59999999999999999999999999999999999999999999999999999999999999999966
Q ss_pred chheeEeChhhhhccCC------CCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhhcCC-CCCCeE
Q psy6548 98 PISAVLADDEVMGTLVP------GTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELRSRLSP-DIVPVV 170 (242)
Q Consensus 98 ~~g~~~~~~~~~~~l~~------~~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l~~~l~~-~~~~~~ 170 (242)
|+|.+++++++++.+.. ..+++||++||+++++++++++.++++++.++.+++.+++++.| +++.. .....+
T Consensus 299 Pi~av~~~~ei~~~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~L~~i~~~~l~~~~~~~G~~l~~~L-~~l~~~~~v~~v 377 (453)
T PRK06943 299 PLSLVLSRDAIFAAFYDDDVTRGFLHSHSYTGNPLACRAALATLDLFAEDDVLARNARKSARLRAAL-APLAAHPQVRHL 377 (453)
T ss_pred cceEEEEcHHHHHhhcccCccCCccCCCCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH-HHHhcCCCEEeE
Confidence 99999999999887753 24788999999999999999999998899999999999999999 66642 334467
Q ss_pred eeeceeEEEEecCCc----hhHHHHHHHHHHCCceeccCCCCEEEEeccCcCCHHHHHHHHHHHHHHHHHHh
Q psy6548 171 RGKGLLNAIVLDKSI----LEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINTMA 238 (242)
Q Consensus 171 ~~~~~~~~~~~~~~~----~~~~~~~~~l~~~gi~~~~~~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~~ 238 (242)
.+.|.++.+++..+. .....+.+.++++|+++.+.+ +.+||+|++.+|++|+++++++|+++++++.
T Consensus 378 rG~Gl~~gvel~~~~~~~~~~~~~i~~~~~~~Gll~~~~g-~~l~~~Ppl~it~~eid~~~~~l~~al~~~~ 448 (453)
T PRK06943 378 RQRGTIFAFDVALDGDAARTFSRRFFEAALERELLLRPIG-TTVYLMPPYVLDDDEIAWLAERTRATLDATL 448 (453)
T ss_pred eccccEEEEEEccCCCcchHHHHHHHHHHHHCCcEEEecC-CEEEEeCCCcCCHHHHHHHHHHHHHHHHHHH
Confidence 899999999996321 124678899999999998874 5799999999999999999999999998863
No 26
>PLN02624 ornithine-delta-aminotransferase
Probab=100.00 E-value=4.1e-36 Score=260.29 Aligned_cols=232 Identities=52% Similarity=0.893 Sum_probs=200.9
Q ss_pred ccccCCCChhh--hcCC--CCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccC
Q psy6548 4 QFPVKSKQVPA--KLKS--NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYE 79 (242)
Q Consensus 4 ~~~~~~~d~~~--~~~~--~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~ 79 (242)
+..+||||++. +.+. .+++++|++||+++++|.++|+++|+++|+++|++||+++|+||+|+|||++|..++.+.+
T Consensus 203 ~~~~~~~d~~~l~~~l~~~~~~iaaiiiEpv~~~~G~v~p~~~~L~~l~~lc~~~gillI~DEv~tG~GrtG~~~a~~~~ 282 (474)
T PLN02624 203 HLKVDFGDLDALEKIFEEDGDRIAAFLFEPIQGEAGVVIPPDGYLKAVRELCSKHNVLMIADEIQTGLARTGKMLACDWE 282 (474)
T ss_pred ceEeCCCCHHHHHHHHHhCCCCEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCcCcCcchhhHHhc
Confidence 56789999988 4443 3679999999999999999999999999999999999999999999999999987776777
Q ss_pred CCCCCEEEeeccccCCccchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Q psy6548 80 DVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELR 159 (242)
Q Consensus 80 ~~~~~~~~~sK~~~~g~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l~ 159 (242)
++.||++++||++++|++|+|++++++++++.+.+..++.|+++++++++++.++++.++++++.++..++.+.+++.|
T Consensus 283 ~i~pDiv~lsK~lggG~~pigav~~~~~i~~~~~~~~~~~T~~g~pl~~aaa~aaLe~l~~~~l~~~~~~~~~~l~~~L- 361 (474)
T PLN02624 283 EVRPDVVILGKALGGGVIPVSAVLADKDVMLCIKPGEHGSTFGGNPLASAVAMAALQVVQDEKLAERSAKLGQELRDQL- 361 (474)
T ss_pred CCCCCEEEecccccCCCCcceeeeecHHHHhHhccCCcCCCCCCCHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHH-
Confidence 8999999999999977689999999999888887777888999999999999999998887778888999999999999
Q ss_pred hhcCCC---CCCeEeeeceeEEEEecCC---chhHHHHHHHHHHCCceeccCCCCEEEEeccCcCCHHHHHHHHHHHHHH
Q psy6548 160 SRLSPD---IVPVVRGKGLLNAIVLDKS---ILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINT 233 (242)
Q Consensus 160 ~~l~~~---~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~gi~~~~~~~~~lR~~~~~~~t~e~i~~~~~~l~~~ 233 (242)
+.+... ......+.|.++.+.+..+ .....++++.|.++||++.|.+++.+||+|++.+|++++++++++|+++
T Consensus 362 ~~l~~~~~~~i~~vrg~G~~~~i~l~~~~~~~~~a~~~~~~L~e~GV~v~p~~~~~lR~~p~l~~t~e~id~~l~~L~~~ 441 (474)
T PLN02624 362 QKIQKQFPKLIKEVRGRGLLNAVVLNSPKLGPVSAYDVCLKLKERGLLAKPTHDTIIRLAPPLSISEDELQECSKALSDV 441 (474)
T ss_pred HHHHHhCCCceEEEEeeEEEEEEEecCCCcChHHHHHHHHHHHhCCeEEecCCCCEEEEECCccCCHHHHHHHHHHHHHH
Confidence 665421 2334567888888887643 1346789999999999999988899999999999999999999999988
Q ss_pred HHH
Q psy6548 234 INT 236 (242)
Q Consensus 234 l~~ 236 (242)
+..
T Consensus 442 l~~ 444 (474)
T PLN02624 442 LEH 444 (474)
T ss_pred HHH
Confidence 765
No 27
>PRK08117 4-aminobutyrate aminotransferase; Provisional
Probab=100.00 E-value=1.5e-36 Score=261.36 Aligned_cols=219 Identities=38% Similarity=0.652 Sum_probs=194.3
Q ss_pred CCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEEeeccccCCccc
Q psy6548 19 NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYP 98 (242)
Q Consensus 19 ~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~sK~~~~g~~~ 98 (242)
.+++++|++||+++++|.++|+++|+++|+++|++||+++|+||+|+|||++|.+++.+++++.||++++||++++| +|
T Consensus 205 ~~~~aavi~Epi~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tG~gr~G~~~~~~~~gv~pDi~t~sK~lg~G-~p 283 (433)
T PRK08117 205 PEEVAAVIIEPVLGEGGYIVPPKSFLKKLREICDRHGILLIFDEVQTGFGRTGEWFAAQTFGVVPDIMTIAKGIASG-LP 283 (433)
T ss_pred CCcEEEEEECCeeCCCCCccCCHHHHHHHHHHHHHcCCEEEEecchhccCccccchhHhhcCCCCCEeehhhhccCC-Cc
Confidence 46899999999999999999999999999999999999999999999999999877777889999999999999999 99
Q ss_pred hheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhhcC--CCCCCeEeeecee
Q psy6548 99 ISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELRSRLS--PDIVPVVRGKGLL 176 (242)
Q Consensus 99 ~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l~~~l~--~~~~~~~~~~~~~ 176 (242)
+|++++++++++.+....+++|+++||++++++.++++.++.+++.++++++.+++++.| +.+. ......+++.|.+
T Consensus 284 igav~~~~~i~~~~~~~~~~~T~~~np~~~aaa~a~L~~l~~~~l~~~~~~~g~~l~~~L-~~l~~~~~~~~~vrg~Gl~ 362 (433)
T PRK08117 284 LSAVVASKELMEQWPLGSHGTTFGGNPVACAAALATLEVIKEEKLLDNANEMGAYALERL-EVLKEKHPVIGDVRGIGLM 362 (433)
T ss_pred ceeEEEcHHHHhhccCCCCCCCCCcCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH-HHHHhcCCceeeeecCCcE
Confidence 999999999998887777888999999999999999999987889999999999999999 6664 2344567888999
Q ss_pred EEEEecCC-----chhHHHHHHHHHHCCceeccCC--CCEEEEeccCcCCHHHHHHHHHHHHHHHHHHhh
Q psy6548 177 NAIVLDKS-----ILEVYDVCIKMKDAGLVTKPIS--NNIIRLSPALNITEQELREGLDIIINTINTMAA 239 (242)
Q Consensus 177 ~~~~~~~~-----~~~~~~~~~~l~~~gi~~~~~~--~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~~~ 239 (242)
+++++..+ ......+.+.|+++||++.+.+ .+.+|++|++.+|++++++++++|+++++++.+
T Consensus 363 ~gi~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~g~~~~~lRl~p~~~~t~~~i~~~~~~l~~~l~~~~~ 432 (433)
T PRK08117 363 IGIEIVDPDGEPDGDAVEKILDKCLEKGLLFYLCGNAGNVLRMIPPLTVTKEEIDEGLDILDEALTEYEA 432 (433)
T ss_pred EEEEEecCCCCcchHHHHHHHHHHHHCCCEEeecCCCCCEEEEeCCccCCHHHHHHHHHHHHHHHHHHhc
Confidence 99888532 1346678899999999997643 479999999999999999999999999988754
No 28
>PRK06105 aminotransferase; Provisional
Probab=100.00 E-value=3.5e-36 Score=259.65 Aligned_cols=219 Identities=31% Similarity=0.538 Sum_probs=194.4
Q ss_pred CCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEEeeccccCCccc
Q psy6548 19 NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYP 98 (242)
Q Consensus 19 ~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~sK~~~~g~~~ 98 (242)
.+++++|++||+++++|.++|+++|+++|+++|++||+++|+||+++|||++|..++++++++.||++++||+++||++|
T Consensus 216 ~~~iAavIvEPiqg~gG~~~~~~~yl~~lr~lc~~~~~llI~DEv~tG~GRtG~~f~~~~~~v~PDi~~~gK~lggG~~P 295 (460)
T PRK06105 216 PDTIAAFIGEPVMGAGGVIVPPKTYWEKIQAVLRKYDILLVADEVICGFGRTGNMFGCETFGIKPDILVMSKQLSSSYQP 295 (460)
T ss_pred CCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCeEEEeccccCCCcCchhhhHHhcCCCCCeeeeecccccCccc
Confidence 46899999999999999999999999999999999999999999999999999988888999999999999999988679
Q ss_pred hheeEeChhhhhccCC-------CCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhhcCC-CCCCeE
Q psy6548 99 ISAVLADDEVMGTLVP-------GTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELRSRLSP-DIVPVV 170 (242)
Q Consensus 99 ~g~~~~~~~~~~~l~~-------~~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l~~~l~~-~~~~~~ 170 (242)
+|.+++++++++.+.+ ..+++|+++||+++++++++++.++++++.++++++.+++++.| +++.. ..+..+
T Consensus 296 ~~av~~~~~i~~~~~~~~~~~~~~~h~~T~~gnpl~~aaa~a~L~~i~~~~l~~~v~~~g~~l~~~L-~~l~~~~~v~~v 374 (460)
T PRK06105 296 LSAVLMNEKVYDPIADESGKIGTFGHGFTASGHPVAAAVALENLAIIEERDLVGNAAERGARLQARL-RALADHPLVGEV 374 (460)
T ss_pred ceEEEEcHHHHHHHhcccccCcccccCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH-HHhhcCCCeEEE
Confidence 9999999999887653 13678999999999999999999998899999999999999999 66642 455678
Q ss_pred eeeceeEEEEecCCc----------hhHHHHHHHHHHCCceeccCCCCEEEEeccCcCCHHHHHHHHHHHHHHHHHHhh
Q psy6548 171 RGKGLLNAIVLDKSI----------LEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINTMAA 239 (242)
Q Consensus 171 ~~~~~~~~~~~~~~~----------~~~~~~~~~l~~~gi~~~~~~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~~~ 239 (242)
.+.|.++.+++..+. .....+...++++|+++.+.+ +.+|++|++..|++|+++++++|+++++++.+
T Consensus 375 rG~Gl~~gie~~~~~~~~~~~~~~~~~a~~i~~~~~~~Gvl~~~~g-~~i~l~Ppl~it~~eid~~~~~l~~~l~~~~~ 452 (460)
T PRK06105 375 RGVGLIAAVELVADKATKTPFEPPGKVGARANAAAHEHGVISRAMG-DTLAFCPPLIITAAQVDEMVDRFGRALDDVAA 452 (460)
T ss_pred EecceEEEEEEecCcccCCCCCchhHHHHHHHHHHHHCCeEEEecC-CEEEEECCCccCHHHHHHHHHHHHHHHHHHHH
Confidence 899999999885321 123568888999999998864 68999999999999999999999999988754
No 29
>PRK07480 putative aminotransferase; Validated
Probab=100.00 E-value=5.1e-36 Score=258.21 Aligned_cols=219 Identities=32% Similarity=0.550 Sum_probs=193.5
Q ss_pred CCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEEeeccccCCccc
Q psy6548 19 NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYP 98 (242)
Q Consensus 19 ~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~sK~~~~g~~~ 98 (242)
.+++++|++||+++.+|.++|+++|+++|+++|++||+++|+||+++|||++|..++++++++.||++++||+++|||+|
T Consensus 217 ~~~vAAvi~EPiqg~gG~~~~~~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~a~~~~gv~PDiv~~gK~l~gG~~P 296 (456)
T PRK07480 217 ADNVAAFIGEPIQGAGGVIIPPATYWPEIQRICRKYDILLVADEVICGFGRTGEWFGSQHFGIKPDLMTIAKGLTSGYIP 296 (456)
T ss_pred CCcEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCcchhhhhhcCCCCCeeeeehhhccCCcc
Confidence 46899999999999999999999999999999999999999999999999999988889999999999999999999669
Q ss_pred hheeEeChhhhhccC--C--CCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHH-HHHHHHHHHHHHhhcCC-CCCCeEee
Q psy6548 99 ISAVLADDEVMGTLV--P--GTHGSTYGGNPLACKLAMTALDVILEENMIENA-YKMGEIFRSELRSRLSP-DIVPVVRG 172 (242)
Q Consensus 99 ~g~~~~~~~~~~~l~--~--~~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~-~~~~~~l~~~l~~~l~~-~~~~~~~~ 172 (242)
+|.+++++++++.+. . ..+++||++||++++++.++|+.++++++.++. +++.+++++.| +++.. ..+..+.+
T Consensus 297 i~av~~~~~i~~~~~~~~~~~~~~~T~~gnpl~~Aaa~a~L~~l~~~~l~~~~~~~~g~~l~~~l-~~l~~~~~i~~vrG 375 (456)
T PRK07480 297 MGAVGVGDRVAEVLIEEGGEFNHGFTYSGHPVAAAVALANLRILRDEGIVERVRDDTGPYLQKRL-RELADHPLVGEVRG 375 (456)
T ss_pred ceEEEEcHHHHHHHhcCCCCcccCCCCCcCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH-HHhhcCCCeeeEEe
Confidence 999999999988772 2 257889999999999999999999988899999 59999999999 55642 45667889
Q ss_pred eceeEEEEecCCch----------hHHHHHHHHHHCCceeccCCCCEEEEeccCcCCHHHHHHHHHHHHHHHHHHhh
Q psy6548 173 KGLLNAIVLDKSIL----------EVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINTMAA 239 (242)
Q Consensus 173 ~~~~~~~~~~~~~~----------~~~~~~~~l~~~gi~~~~~~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~~~ 239 (242)
.|.++.+++..+.. ....+.+.++++|+++.+. .+.+|++|++..|++|+++++++|++++.++.+
T Consensus 376 ~Glm~gie~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gll~~~~-~~~l~~~Ppl~it~~eid~~~~~l~~al~~~~~ 451 (456)
T PRK07480 376 VGLVGAIELVKDKATRERFEAGGGVGTICRDHCFANGLIMRAV-GDRMIISPPLVITHAEIDELVEKARKALDATAA 451 (456)
T ss_pred ecceEEEEEeccccccccCcchhhHHHHHHHHHHHCCcEEeec-CCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999854310 1246778899999999876 478999999999999999999999999998754
No 30
>PRK07483 hypothetical protein; Provisional
Probab=100.00 E-value=3.7e-36 Score=258.40 Aligned_cols=221 Identities=34% Similarity=0.571 Sum_probs=194.4
Q ss_pred CCCEEEEEEccccc-CCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEEeeccccCCcc
Q psy6548 19 NPNICAFMVEPIQG-EAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLY 97 (242)
Q Consensus 19 ~~~~~~i~~e~~~~-~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~sK~~~~g~~ 97 (242)
.+++++|++||+++ .+|.++|+++|+++++++|++||+++|+||+++|||++|..++++++++.||+++++|++++||+
T Consensus 197 ~~~iAAvivEPiqg~~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfGRtG~~~a~~~~gv~PDiv~~gK~l~gG~~ 276 (443)
T PRK07483 197 PDTVAAFVAETVVGATAGAVPPVPGYFKRIREVCDRYGVLLILDEVMCGMGRTGTLFACEEDGVAPDLVTIAKGLGAGYQ 276 (443)
T ss_pred CCceEEEEEeCcccCcCCeEeCCHHHHHHHHHHHHHhCCEEEEecceeCcccCcHHHHHhhcCCCCCeeeehhhhccCcc
Confidence 36899999999998 57889999999999999999999999999999999999999998999999999999999999955
Q ss_pred chheeEeChhhhhccCCC----CCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhhc-C-CCCCCeEe
Q psy6548 98 PISAVLADDEVMGTLVPG----THGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELRSRL-S-PDIVPVVR 171 (242)
Q Consensus 98 ~~g~~~~~~~~~~~l~~~----~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l~~~l-~-~~~~~~~~ 171 (242)
|+|.+++++++++.+... .+++||++||++++++.++++.++++++.++.+++.+++++.| +++ . ......+.
T Consensus 277 Pi~av~~~~~i~~~~~~~~~~~~h~~T~~gnpl~~aaa~a~l~~i~~~~l~~~~~~~g~~l~~~L-~~l~~~~~~i~~vR 355 (443)
T PRK07483 277 PIGAVLASDRIYDAIADGSGFFQHGHTYLGHATACAAALAVQRVIAEDGLLANVRARGEQLRARL-RERLGQHPHVGDIR 355 (443)
T ss_pred ccEEEEEcHHHHHHHhcCCCccccCCCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH-HHHHhcCCCeeeEe
Confidence 999999999998877542 4788999999999999999999999999999999999999999 554 2 23456788
Q ss_pred eeceeEEEEecCCc----------hhHHHHHHHHHHCCceeccCC-------CCEEEEeccCcCCHHHHHHHHHHHHHHH
Q psy6548 172 GKGLLNAIVLDKSI----------LEVYDVCIKMKDAGLVTKPIS-------NNIIRLSPALNITEQELREGLDIIINTI 234 (242)
Q Consensus 172 ~~~~~~~~~~~~~~----------~~~~~~~~~l~~~gi~~~~~~-------~~~lR~~~~~~~t~e~i~~~~~~l~~~l 234 (242)
+.|.++.+++..+. .....+.+.++++|+++.+.+ ++.+||.|++..|++|+++++++|++++
T Consensus 356 G~Glm~gie~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gll~~~~~~~~~~~~~~~l~~~PpL~it~~eid~~~~~l~~~l 435 (443)
T PRK07483 356 GRGLFVGVELVADRATKAPFDPALKLHARIKREAMARGLMVYPMGGTIDGVRGDHVLLAPPFIITAAQIDEIVERLGDAI 435 (443)
T ss_pred ecccEEEEEEeecccccCCCCchhhHHHHHHHHHHHCCcEEEecCccccCCCCCEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 99999999885421 124678899999999997653 3689999999999999999999999999
Q ss_pred HHHhhh
Q psy6548 235 NTMAAK 240 (242)
Q Consensus 235 ~~~~~~ 240 (242)
.++..-
T Consensus 436 ~~~~~~ 441 (443)
T PRK07483 436 DAALAA 441 (443)
T ss_pred HHHHhh
Confidence 987543
No 31
>TIGR01885 Orn_aminotrans ornithine aminotransferase. This model describes the final step in the biosynthesis of ornithine from glutamate via the non-acetylated pathway. Ornithine amino transferase takes L-glutamate 5-semialdehyde and makes it into ornithine, which is used in the urea cycle, as well as in the biosynthesis of arginine. This model includes low-GC bacteria and eukaryotic species. The genes from two species are annotated as putative acetylornithine aminotransferases - one from Porphyromonas gingivalis, and the other from Staphylococcus aureus. After homology searching using BLAST it was determined that these two sequences were most closely related to ornithine aminotransferases. This model's seed includes one characterized hit, from Bacillus subtilis.
Probab=100.00 E-value=7.5e-36 Score=254.99 Aligned_cols=230 Identities=62% Similarity=1.025 Sum_probs=200.0
Q ss_pred ccccCCCChhh--hcCC--CCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccC
Q psy6548 4 QFPVKSKQVPA--KLKS--NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYE 79 (242)
Q Consensus 4 ~~~~~~~d~~~--~~~~--~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~ 79 (242)
+..+||||+++ +.+. .+++++|++||+++++|.+.|+++++++|+++|++||+++|+||+|+|+|++|.+++.+..
T Consensus 165 ~~~~~~~d~~~le~~l~~~~~~~~avi~E~v~~~~G~~~~~~~~l~~l~~l~~~~~~lli~DEv~~g~g~~G~~~~~~~~ 244 (401)
T TIGR01885 165 FKKIPYNNLEALEEALEDHGPNVCAFIVEPIQGEAGVVVPDDGYLKKVRELCTKHNVLLIADEIQTGLGRTGKLLCVDHE 244 (401)
T ss_pred ceEeCCCCHHHHHHHHHhcCCCEEEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCccchhhHHhhc
Confidence 56789999988 3343 3679999999999999999999999999999999999999999999999999987666667
Q ss_pred CCCCCEEEeeccccCCccchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Q psy6548 80 DVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELR 159 (242)
Q Consensus 80 ~~~~~~~~~sK~~~~g~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l~ 159 (242)
++.||++++||++++|++|+|++++++++++.+....+..++++++++++++.++++.++++++.++.+++++++++.|
T Consensus 245 ~~~~di~~~gK~l~~g~~~ig~v~~~~~i~~~~~~~~~~~t~~~~p~~~~aa~a~L~~i~~~~l~~~~~~~~~~~~~~L- 323 (401)
T TIGR01885 245 NVKPDIVLLGKALSGGVYPVSAVLADDDVMLTIKPGEHGSTYGGNPLACAVAVAALEVLEEEKLAENAEKLGEIFRDQL- 323 (401)
T ss_pred CCCCCEEEeeccccCCCCCcEEEEEcHHHHhhccCCCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH-
Confidence 8889999999999966589999999999999887766777889999999999999999887778889999999999999
Q ss_pred hhcCCCCCCeEeeeceeEEEEecCCc--hhHHHHHHHHHHCCceeccCCCCEEEEeccCcCCHHHHHHHHHHHHHHH
Q psy6548 160 SRLSPDIVPVVRGKGLLNAIVLDKSI--LEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTI 234 (242)
Q Consensus 160 ~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~gi~~~~~~~~~lR~~~~~~~t~e~i~~~~~~l~~~l 234 (242)
++++.......++.|.++.+.++.+. ....++.+.|.++||.+.+.+.+.+||+|++.++++++++++++|++.+
T Consensus 324 ~~l~~~~~~~~~g~g~~~~i~~~~~~~~~~~~~l~~~l~~~Gv~v~~~~~~~lRi~p~l~~t~~~i~~~l~~l~~~l 400 (401)
T TIGR01885 324 KKLPKPIITEVRGRGLLNAIVIDESKTGRTAWDLCLKLKEKGLLAKPTHGNIIRLAPPLVITEEQLDEGLEIIKKVI 400 (401)
T ss_pred HhccCCceeEEeecCeeEEEEeccCcchhHHHHHHHHHHhCCEEEEecCCCEEEEeCCccCCHHHHHHHHHHHHHHh
Confidence 77764444456678899988876541 2578899999999999999888899999999999999999999998875
No 32
>PRK06173 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=100.00 E-value=6.2e-36 Score=255.85 Aligned_cols=217 Identities=31% Similarity=0.557 Sum_probs=193.4
Q ss_pred CCCEEEEEEccc-ccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEEeeccccCCcc
Q psy6548 19 NPNICAFMVEPI-QGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLY 97 (242)
Q Consensus 19 ~~~~~~i~~e~~-~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~sK~~~~g~~ 97 (242)
.+++++|++||+ ++.+|.++|+++|+++++++|++||+++|+||+|+|||++|.+++.+++++.||++++||+++||++
T Consensus 204 ~~~iAAvi~EPi~qg~gG~~~~~~~yl~~l~~lc~~~g~llI~DEv~tG~GrtG~~~a~~~~gv~PDiv~~gK~l~gG~~ 283 (429)
T PRK06173 204 GDEIAALILEPVVQGAGGMYFYSPTYLVKARELCDQYGVLLIFDEIATGFGRTGKLFALEHAGVVPDIMCIGKALTGGYL 283 (429)
T ss_pred CCcEEEEEEcchhhccCCcccCCHHHHHHHHHHHHHcCCeEEecchhcCCCcCCcchHHHhcCCCCCEEEeehhhhCCcc
Confidence 468999999996 9999999999999999999999999999999999999999998888889999999999999999967
Q ss_pred chheeEeChhhhhccCC-----CCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhhcC-CCCCCeEe
Q psy6548 98 PISAVLADDEVMGTLVP-----GTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELRSRLS-PDIVPVVR 171 (242)
Q Consensus 98 ~~g~~~~~~~~~~~l~~-----~~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l~~~l~-~~~~~~~~ 171 (242)
+++.+++++++++.+.+ ..+++|++++|+++++++++++.++++++.++++++.+++++.| +.+. ......+.
T Consensus 284 p~~a~~~~~~i~~~~~~~~~~~~~~~~T~~g~p~~~aaa~a~l~~i~~~~~~~~~~~~g~~l~~~L-~~~~~~~~v~~vR 362 (429)
T PRK06173 284 TLSATITTEAIAQTICSGEAKCFMHGPTFMANPLACAIAAESIRLLLESPWQQNIQRIEAQLKQEL-APAAEFDSVAEVR 362 (429)
T ss_pred ccceEEecHHHHHHHhcCCCCccccCCCCCcCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH-HHhhcCCCeeeee
Confidence 99999999998887753 24777899999999999999999988888999999999999999 5552 22334567
Q ss_pred eeceeEEEEecCCchhHHHHHHHHHHCCceeccCCCCEEEEeccCcCCHHHHHHHHHHHHHHHHHHh
Q psy6548 172 GKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINTMA 238 (242)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~~ 238 (242)
+.|+++.+++... .....+.+.|+++|+++.+.+ +.+||.|++..|++|+++++++|++++.++.
T Consensus 363 g~Gl~~~iel~~~-~~~~~i~~~l~e~Gi~v~~~g-~~l~~~Ppl~it~~ei~~~~~~l~~~l~~~~ 427 (429)
T PRK06173 363 VLGAIGVVEMKEP-VNMATLQPRFVEHGIWVRPFG-KLVYIMPPFIISPDELSQLTSGLLRVLKQEY 427 (429)
T ss_pred ccceEEEEEeCCc-ccHHHHHHHHHHCCeEEEecC-CEEEEeCCccCCHHHHHHHHHHHHHHHHHHh
Confidence 8899999999775 456789999999999998875 6999999999999999999999999998754
No 33
>PRK08742 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=100.00 E-value=6.8e-36 Score=257.82 Aligned_cols=218 Identities=29% Similarity=0.518 Sum_probs=193.1
Q ss_pred CCCEEEEEEcc-cccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEEeeccccCCcc
Q psy6548 19 NPNICAFMVEP-IQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLY 97 (242)
Q Consensus 19 ~~~~~~i~~e~-~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~sK~~~~g~~ 97 (242)
.+++++|++|| +++.+|.++|+++|+++++++|++||+++|+||+++|||++|..|+++++++.||+++++|+++|||+
T Consensus 234 ~~~iAAvI~EPviqg~gG~~~~p~~fl~~lr~lc~~~gillI~DEV~TGfGRtG~~~a~e~~gv~PDiv~~gKgl~gG~~ 313 (472)
T PRK08742 234 PGEICALILEPRLQCAGGMRMHHPAYLRRARELCDAHGAFLIADEIATGFGRTGTLFACEQAGVMPDLLCLSKGLTGGFL 313 (472)
T ss_pred CCceEEEEEccccccCCCcccCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCccchHHHhcCCCCCEEEEcccccCCCC
Confidence 47899999999 69999999999999999999999999999999999999999999999999999999999999999966
Q ss_pred chheeEeChhhhhccCC------CCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhhcCC-CCCCeE
Q psy6548 98 PISAVLADDEVMGTLVP------GTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELRSRLSP-DIVPVV 170 (242)
Q Consensus 98 ~~g~~~~~~~~~~~l~~------~~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l~~~l~~-~~~~~~ 170 (242)
|+|.+++++++++.+.. ..+++||++||++++++.++++.++++++.++.++..+++++.+ +.+.. ..+..+
T Consensus 314 Plaav~~~~ei~~~~~~~~~~~~~~h~~T~~gnpl~~Aaa~a~L~~i~~~~l~~~~~~~g~~l~~~~-~~~~~~~~i~dv 392 (472)
T PRK08742 314 PLSAVLATQQLYDAFLDDSRERAFLHSHSYTGNPLACAAALATLDIFADDDVIARNQPTAARMTQLA-AQIGEHPHVADV 392 (472)
T ss_pred CcceeeccHHHHHHhhccCccCccCcCCCCCccHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH-HHHhcCCCeeeE
Confidence 99999999999887642 24788999999999999999999999999999999999999877 55542 355678
Q ss_pred eeeceeEEEEecCCc----------hhHHHHHHHHHHCCceeccCCCCEEEEeccCcCCHHHHHHHHHHHHHHHHHHh
Q psy6548 171 RGKGLLNAIVLDKSI----------LEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINTMA 238 (242)
Q Consensus 171 ~~~~~~~~~~~~~~~----------~~~~~~~~~l~~~gi~~~~~~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~~ 238 (242)
.+.|.++.+++..+. .....+.+.++++|+++.+.+ +.+||.|++..|++|+++++++|+++++++.
T Consensus 393 RG~Gl~~giel~~~~~~~~~~~~~~~~~~~~~~~~~~~Gll~~~~g-~vi~~~PpL~it~~ei~~~~~~l~~~l~~~~ 469 (472)
T PRK08742 393 RQAGMVVAFELTRGGNKRTPFPPAARVGLHAYRAALARGVVLRPLG-DVLYWMPPYCVDEAQLALLADTTRHAIDEAV 469 (472)
T ss_pred eccceEEEEEeccCccccccCCchhHHHHHHHHHHHHCCeEEEecC-CEEEEECCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 899999999986431 013567888999999998874 7999999999999999999999999998764
No 34
>PRK05964 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=100.00 E-value=5.8e-36 Score=256.93 Aligned_cols=232 Identities=32% Similarity=0.535 Sum_probs=198.5
Q ss_pred ccccCCCC-----hhh--hcCC--CCCEEEEEEcc-cccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcc
Q psy6548 4 QFPVKSKQ-----VPA--KLKS--NPNICAFMVEP-IQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKL 73 (242)
Q Consensus 4 ~~~~~~~d-----~~~--~~~~--~~~~~~i~~e~-~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~ 73 (242)
.+.+|+|| ++. +.+. .+++++|++|| +++.+|.++|+++|+++|+++|++||+++|+||+|+|||++|..
T Consensus 173 ~~~~~~~d~~~~~~~~l~~~l~~~~~~iaavi~Ep~i~~~gG~~~~~~~~l~~l~~lc~~~g~llI~DEv~tg~gr~G~~ 252 (423)
T PRK05964 173 TAPFPPDGYEQATLDALEALLEKHAGEIAAFIVEPLVQGAGGMLFYDPRYLAELRRICDRHGVLLIFDEIATGFGRTGTL 252 (423)
T ss_pred EeCCCcchhHHHHHHHHHHHHHhCCCcEEEEEEecccccCCCcccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCcch
Confidence 35677777 666 3332 46899999999 69999999999999999999999999999999999999999987
Q ss_pred cccccCCCCCCEEEeeccccCCccchheeEeChhhhhccCCC------CCCCCCCCCHHHHHHHHHHHHHHHhccHHHHH
Q psy6548 74 LAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPG------THGSTYGGNPLACKLAMTALDVILEENMIENA 147 (242)
Q Consensus 74 ~~~~~~~~~~~~~~~sK~~~~g~~~~g~~~~~~~~~~~l~~~------~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~ 147 (242)
++++.+++.||++++||++++|++|+|++++++++++.+... .+++||++|+++++++.++++.++.+++.+++
T Consensus 253 ~a~~~~~v~pDi~~~~K~l~gG~~p~~av~~~~~i~~~~~~~~~~~~~~~~~T~~~np~~~aaa~a~l~~l~~~~~~~~~ 332 (423)
T PRK05964 253 FACEQAGVSPDIMCLSKGLTGGYLPLAATLCTAEIFEAFYSDDRAKAFMHSPSYTANPLACAAANASLDLFEDEPVLERV 332 (423)
T ss_pred hHHHhcCCCCCeeeeehhhhcCcccceEEEEcHHHHHhhhcCCcccccccCCCCCcCHHHHHHHHHHHHHHHhcCHHHHH
Confidence 777888999999999999998868999999999998877531 46788899999999999999999888899999
Q ss_pred HHHHHHHHHHHHhhcCC-CCCCeEeeeceeEEEEecCCc--hhHHHHHHHHHHCCceeccCCCCEEEEeccCcCCHHHHH
Q psy6548 148 YKMGEIFRSELRSRLSP-DIVPVVRGKGLLNAIVLDKSI--LEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELR 224 (242)
Q Consensus 148 ~~~~~~l~~~l~~~l~~-~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~gi~~~~~~~~~lR~~~~~~~t~e~i~ 224 (242)
+++.+++++.| +++.. .......+.|.++.+++.++. .....+.+.|.++||++.+.+ +.+|++|++.+|++||+
T Consensus 333 ~~~g~~l~~~l-~~l~~~~~i~~vrg~Gl~~~i~l~~~~~~~~~~~l~~~l~~~Gv~v~~~~-~~lR~~p~l~~t~edId 410 (423)
T PRK05964 333 AALSAGLAEGL-EPFRDLPGVADVRVLGAIGAVELDRPVLERDGPALRAFALERGVLLRPLG-NTIYLMPPYIITAEELD 410 (423)
T ss_pred HHHHHHHHHHH-HhhccCCCeEEeecccEEEEEEeccCcchhHHHHHHHHHHHCCeEEEecC-CEEEEeCCcccCHHHHH
Confidence 99999999999 66642 223345678899999987641 136789999999999998864 78999999999999999
Q ss_pred HHHHHHHHHHHHH
Q psy6548 225 EGLDIIINTINTM 237 (242)
Q Consensus 225 ~~~~~l~~~l~~~ 237 (242)
+++++|+++++++
T Consensus 411 ~~v~~l~~al~~~ 423 (423)
T PRK05964 411 RITDAIVEVADEL 423 (423)
T ss_pred HHHHHHHHHHhhC
Confidence 9999999998763
No 35
>PRK07036 hypothetical protein; Provisional
Probab=100.00 E-value=9.5e-36 Score=257.18 Aligned_cols=218 Identities=32% Similarity=0.607 Sum_probs=193.2
Q ss_pred CCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccc-cCCCCCCEEEeeccccCCcc
Q psy6548 19 NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIH-YEDVRPDIVILGKALSGGLY 97 (242)
Q Consensus 19 ~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~-~~~~~~~~~~~sK~~~~g~~ 97 (242)
.+++++|++||+++++|.++|+++|+++|+++|++||+++|+||+++|||++|..+.++ ++++.||+++++|++++||+
T Consensus 218 ~~~iAavi~EPv~g~gG~~~p~~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~~~~~~~gv~PDivt~gK~l~gG~~ 297 (466)
T PRK07036 218 ADNIAAFIAEPILGSGGVIVPPPGYHARMREICRRYDILYISDEVVTGFGRLGHFFASEAVFGIQPDIITFAKGLTSGYQ 297 (466)
T ss_pred CCceEEEEEeCCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEeechhCCCcCchhhhhhhhcCCCCCEEEEccccccCcc
Confidence 47899999999999999999999999999999999999999999999999999877777 68999999999999999966
Q ss_pred chheeEeChhhhhccCC-------CCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhhcCC-CCCCe
Q psy6548 98 PISAVLADDEVMGTLVP-------GTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELRSRLSP-DIVPV 169 (242)
Q Consensus 98 ~~g~~~~~~~~~~~l~~-------~~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l~~~l~~-~~~~~ 169 (242)
|+|.+++++++++.+.+ ..+++||++||+++++++++++.++++++.++++++.+++++.| +.+.. ..+..
T Consensus 298 Pi~av~~~~~i~~~~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~Le~i~~~~l~~~~~~~g~~l~~~L-~~l~~~~~v~~ 376 (466)
T PRK07036 298 PLGAVIISERLLDVISGPNAKGNVFTHGFTYSGHPVACAAALKNIEIMEREGLCEHVREVGPYFEERL-ASLRELPLVGD 376 (466)
T ss_pred ccEEEEEcHHHHHHHhcccCcCcccccCCCCCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH-HHhccCCCEEE
Confidence 99999999999887652 24678999999999999999999988899999999999999999 66642 45567
Q ss_pred EeeeceeEEEEecCCc----------hhHHHHHHHHHHCCceeccCCCCEEEEeccCcCCHHHHHHHHHHHHHHHHHHh
Q psy6548 170 VRGKGLLNAIVLDKSI----------LEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINTMA 238 (242)
Q Consensus 170 ~~~~~~~~~~~~~~~~----------~~~~~~~~~l~~~gi~~~~~~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~~ 238 (242)
+.+.|.++.+++..+. .....+.+.|+++|+++.+.+ +.+|++|++.+|++|+++++++|++++.++.
T Consensus 377 vrG~Gl~~~ve~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gvl~~~~~-~~~~l~Ppl~it~~~id~~~~~l~~al~~~~ 454 (466)
T PRK07036 377 VRGDHLMACVECVADKGSKALLPEDIAIGQRIDRHCQERGLLVRPLE-HLCVLSPPLIITRAQIDEIVAILRAAIEETA 454 (466)
T ss_pred EEeeceEEEEEEccCccccCCCCchhHHHHHHHHHHHHCCcEEeecC-CEEEEeCCCcCCHHHHHHHHHHHHHHHHHHH
Confidence 8899999999985421 124568889999999998864 6899999999999999999999999998764
No 36
>PRK07030 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=100.00 E-value=7.6e-36 Score=257.56 Aligned_cols=217 Identities=32% Similarity=0.541 Sum_probs=193.9
Q ss_pred CCCEEEEEEcc-cccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEEeeccccCCcc
Q psy6548 19 NPNICAFMVEP-IQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLY 97 (242)
Q Consensus 19 ~~~~~~i~~e~-~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~sK~~~~g~~ 97 (242)
.+++++|++|| +++.+|.++|+++|+++|+++|++||+++|+||+++|||++|..++++++++.||+++++|+++|||+
T Consensus 212 ~~~iAAvi~EP~iqg~gG~~~~~~~yl~~lr~lc~~~g~llI~DEV~TGfGRtG~~~a~~~~gv~PDiv~~gKgl~gG~~ 291 (466)
T PRK07030 212 HDEIAAVIVEPLIQGAGGMRMYHPVYLKLLREACDRYGVHLIHDEIAVGFGRTGTMFACEQAGIRPDFLCLSKALTGGYL 291 (466)
T ss_pred CCceEEEEEecccccCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhCcCccccchHHHhcCCCCCEEeeehhccCCcc
Confidence 47899999999 79999999999999999999999999999999999999999999999999999999999999999966
Q ss_pred chheeEeChhhhhccC-------CCCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhhcCC-CCCCe
Q psy6548 98 PISAVLADDEVMGTLV-------PGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELRSRLSP-DIVPV 169 (242)
Q Consensus 98 ~~g~~~~~~~~~~~l~-------~~~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l~~~l~~-~~~~~ 169 (242)
|+|.+++++++++.+. ...+++||++||++++++.++++.++++++.++.+++.+++++.| +++.. .....
T Consensus 292 Pi~av~~~~ei~~~~~~~~~~~~~~~h~~T~~gnpla~aaa~a~L~~i~~~~l~~~~~~~G~~l~~~L-~~l~~~~~v~~ 370 (466)
T PRK07030 292 PLAAVLTTDTVYQAFYDDYPTLRAFLHSHSYTGNPLACAAALATLDIFEQDNVIENNRALARRMAEAT-AHLADHPHVAE 370 (466)
T ss_pred cceEEEecHHHHHHHhcccccccccccCCCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH-HHHhcCCCEEE
Confidence 9999999999987763 235789999999999999999999999899999999999999999 66642 34566
Q ss_pred EeeeceeEEEEecCCc----------hhHHHHHHHHHHCCceeccCCCCEEEEeccCcCCHHHHHHHHHHHHHHHHHH
Q psy6548 170 VRGKGLLNAIVLDKSI----------LEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINTM 237 (242)
Q Consensus 170 ~~~~~~~~~~~~~~~~----------~~~~~~~~~l~~~gi~~~~~~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~ 237 (242)
+.+.|.++.+++..+. .....+.+.++++|+++.+.+ +.+|+.|++.+|++|+++++++|+++++++
T Consensus 371 vrG~Gl~~gie~~~~~~~~~~~~~~~~~~~~i~~~~~~~Gvl~~~~g-~~i~~~Ppl~it~~eid~~~~~l~~al~~~ 447 (466)
T PRK07030 371 VRQTGMILAIEMVQDKASKTPYPWQERRGLKVYQHALERGALLRPLG-SVVYFLPPYVITPEQIDFLAEVASEGIDIA 447 (466)
T ss_pred eEeceeEEEEEeccCccccccCcchhHHHHHHHHHHHHCCeEEEecC-CEEEEECCccCCHHHHHHHHHHHHHHHHHH
Confidence 8899999999985431 013568889999999998864 689999999999999999999999999987
No 37
>TIGR02407 ectoine_ectB diaminobutyrate--2-oxoglutarate aminotransferase. Members of this family of class III pyridoxal-phosphate-dependent aminotransferases are diaminobutyrate--2-oxoglutarate aminotransferase (EC 2.6.1.76) that catalyze the first step in ectoine biosynthesis from L-aspartate beta-semialdehyde. This family is readily separated phylogenetically from enzymes with the same substrate and product but involved in other process such as siderophore or 1,3-diaminopropane biosynthesis. The family TIGR00709 previously included both groups but has now been revised to exclude the ectoine biosynthesis proteins of this family. Ectoine is a compatible solute particularly effective in conferring salt tolerance.
Probab=100.00 E-value=5.5e-36 Score=255.77 Aligned_cols=213 Identities=31% Similarity=0.573 Sum_probs=188.6
Q ss_pred CCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEEeeccccC-Cccc
Q psy6548 20 PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSG-GLYP 98 (242)
Q Consensus 20 ~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~sK~~~~-g~~~ 98 (242)
+++++|++||+++++|.++|+++|+++|+++|++||+++|+||+++|||++|..++++++++.||++++||++++ | +|
T Consensus 193 ~~~aavi~Epi~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG~GRtG~~~a~~~~~v~PDi~~~~K~lg~~G-~p 271 (412)
T TIGR02407 193 DLPAAVILETVQGEGGINVASDEWLQRLEKLCRRHDILLIVDDIQAGCGRTGTFFSFEPAGIEPDIVCLSKSISGYG-LP 271 (412)
T ss_pred CceEEEEeccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCccchhHHhcccCCCCCEEEechhccCCc-cc
Confidence 578999999999999998999999999999999999999999999999999998888888999999999999997 9 89
Q ss_pred hheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHH-HHhccHHHHHHHHHHHHHHHHHhhcCC--C-CCCeEeeec
Q psy6548 99 ISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDV-ILEENMIENAYKMGEIFRSELRSRLSP--D-IVPVVRGKG 174 (242)
Q Consensus 99 ~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~-~~~~~~~~~~~~~~~~l~~~l~~~l~~--~-~~~~~~~~~ 174 (242)
+|++++++++ +.+.+..+.+||++|+++++++.++++. ++++++.+++++++++++++| +.+.. . ....+++.|
T Consensus 272 igav~~~~~~-~~~~~~~~~~T~~gnpl~~aaa~a~l~~~i~~~~l~~~~~~~g~~l~~~l-~~l~~~~~~~~~~vrg~G 349 (412)
T TIGR02407 272 LALTLIKPEL-DVWKPGEHNGTFRGNNLAFVTATAALEYYWSDDAFEKAVQRKSEIIQERL-DRIVAEYPELIKQVRGRG 349 (412)
T ss_pred eeEEEEchhh-hccCCCccCCCCCccHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH-HHHHhhCCCceEeeecce
Confidence 9999998876 6666566888999999999999999995 767779999999999999999 55432 1 345677889
Q ss_pred eeEEEEecCCchhHHHHHHHHHHCCceeccCC--CCEEEEeccCcCCHHHHHHHHHHHHHHHHH
Q psy6548 175 LLNAIVLDKSILEVYDVCIKMKDAGLVTKPIS--NNIIRLSPALNITEQELREGLDIIINTINT 236 (242)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~--~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~ 236 (242)
+++|++++.. .....+.+.|+++||++.+.+ .+.+|++|++.+|++|+++++++|++++++
T Consensus 350 l~~~l~l~~~-~~~~~~~~~~~~~Gv~v~~~~~~~~~lr~~p~l~~t~~~i~~~~~~l~~~l~~ 412 (412)
T TIGR02407 350 LMQGIECGDG-DLAGKIAKAAFENGLIIETSGPNDEVIKLLPPLTIDEETLQQGLDILEQAVEE 412 (412)
T ss_pred eEEEEEecCh-HHHHHHHHHHHHCCCEEeccCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHhC
Confidence 9999999875 567789999999999998654 478999999999999999999999998853
No 38
>PRK02936 argD acetylornithine aminotransferase; Provisional
Probab=100.00 E-value=1.2e-35 Score=251.90 Aligned_cols=226 Identities=36% Similarity=0.612 Sum_probs=196.3
Q ss_pred ccccCCCChhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCC
Q psy6548 4 QFPVKSKQVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVR 82 (242)
Q Consensus 4 ~~~~~~~d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~ 82 (242)
+..+||||+++ +...++++++|++||+++++|.++++++++++|+++|++||+++|+||+|+||+++|.++....+++.
T Consensus 149 ~~~~~~~d~~~l~~~~~~~~~~ii~e~i~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DEv~~g~g~~g~~~~~~~~~~~ 228 (377)
T PRK02936 149 FTHVPFNDIKALKEVMNEEVAAVMLEVVQGEGGVIPADPAFLQEVQTLCKKFGALLIIDEVQTGIGRTGTLFAYEQFGLD 228 (377)
T ss_pred ceEeCCCCHHHHHHhccCCeEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCchhhHHHhhCCC
Confidence 45689999998 55556789999999999999988889999999999999999999999999999998876666677888
Q ss_pred CCEEEeeccccCCccchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhh-
Q psy6548 83 PDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELRSR- 161 (242)
Q Consensus 83 ~~~~~~sK~~~~g~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l~~~- 161 (242)
||++++||++++| +|+|++++++++++.+....+..++++++++++++.++++.+..+++.++++++++++++.| ++
T Consensus 229 ~di~t~sK~l~~G-~~ig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~l~~~L-~~~ 306 (377)
T PRK02936 229 PDIVTVAKGLGNG-IPVGAMIGKKELGTAFGPGSHGSTFGGNPLAMAAAKEVLQVIKQPSFLEEVQEKGEYFLQKL-QEE 306 (377)
T ss_pred CcEEEEcccccCC-CccEEEEEcHHHHhhccCCCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH-HHH
Confidence 9999999999999 89999999999999988776778889999999999999998876778899999999999999 54
Q ss_pred cCC-CCCCeEeeeceeEEEEecCCchhHHHHHHHHHHCCceeccCCCCEEEEeccCcCCHHHHHHHHHHHHHHH
Q psy6548 162 LSP-DIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTI 234 (242)
Q Consensus 162 l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~lR~~~~~~~t~e~i~~~~~~l~~~l 234 (242)
+.. .......+.|+++|++++.+ ...+.+.|.++||++.+.+.+++|++|++.++++++++++++|++++
T Consensus 307 ~~~~~~~~~v~~~g~~~~i~~~~~---~~~~~~~l~~~gv~v~~~g~~~lRi~p~~~~~~~~i~~~i~~l~~~~ 377 (377)
T PRK02936 307 LEHLECVKNIRGKGLMIGIECTEE---VAPVIEQLREEGLLVLSAGPNVIRLLPPLVVTKEELDQAVYLLKKVL 377 (377)
T ss_pred HhhCCcEEeEeecceEEEEEecch---HHHHHHHHHHCCeEEecCCCCEEEEECCcccCHHHHHHHHHHHHHhC
Confidence 321 23334456788999998763 67889999999999999888999999999999999999999998753
No 39
>PRK08593 4-aminobutyrate aminotransferase; Provisional
Probab=100.00 E-value=9.9e-36 Score=256.04 Aligned_cols=220 Identities=30% Similarity=0.568 Sum_probs=196.6
Q ss_pred CCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEEeeccccCCccc
Q psy6548 19 NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYP 98 (242)
Q Consensus 19 ~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~sK~~~~g~~~ 98 (242)
.+++++|++||+++++|.++|+++|+++++++|++||+++|+||+|+|||++|..++.+++++.||++++||++++| +|
T Consensus 205 ~~~iAavI~EPv~g~gG~~~~~~~yl~~l~~lc~~~g~llI~DEv~tg~GrtG~~~a~~~~gv~pDi~t~gK~l~~G-~p 283 (445)
T PRK08593 205 ADEVACIVIETIQGDGGLLEPVPGYFEALYKFCREHGILFAVDDIQQGLGRTGKWSSISHFNITPDLMSFGKSLAGG-MP 283 (445)
T ss_pred CCceEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCchHHHHHhcCCCCCEeeecccccCC-cc
Confidence 36899999999999999999999999999999999999999999999999999877778889999999999999999 89
Q ss_pred hheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhhcC--CCCCCeEeeecee
Q psy6548 99 ISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELRSRLS--PDIVPVVRGKGLL 176 (242)
Q Consensus 99 ~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l~~~l~--~~~~~~~~~~~~~ 176 (242)
+|++++++++++.+....+.+|++++|+++++++++++.++++++.++++++.+++++.| +++. ......+.+.|.+
T Consensus 284 ~gav~~~~~i~~~~~~~~~~~T~~~~pl~~aaa~a~l~~l~~~~l~~~~~~~g~~l~~~L-~~l~~~~~~v~~vrG~Gl~ 362 (445)
T PRK08593 284 MSAIVGRKEIMESLEAPAHLFTTGANPVSCAAALATIDMIEDESLLQRSAEKGEYARKRF-DQWVSKYNFVGDVRGYGLS 362 (445)
T ss_pred cEEEEEcHHHHhhhccCCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH-HHHHhcCCcEEEEeccceE
Confidence 999999999999887666778999999999999999999988889999999999999999 6653 2456678889999
Q ss_pred EEEEecCCc-------hhHHHHHHHHHHCCceeccCCCCEEEEeccCcCCHHHHHHHHHHHHHHHHHHhhh
Q psy6548 177 NAIVLDKSI-------LEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINTMAAK 240 (242)
Q Consensus 177 ~~~~~~~~~-------~~~~~~~~~l~~~gi~~~~~~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~~~~ 240 (242)
+.+++..+. .....+.+.|+++||++.+.+.+.+|++|++.+|++|+++++++++++++++.++
T Consensus 363 ~gi~l~~~~~~~~~~~~~~~~~~~~~~~~Gv~~~~~~~~~lr~~p~l~~t~~~id~~~~~l~~~l~~~~~~ 433 (445)
T PRK08593 363 IGIDIVSDKKLKTRDNEAALKICNYCFEHGVVIIAVAGNVLRFQPPLVITYEQLDTALNTIEQAFTALEAG 433 (445)
T ss_pred EEEEEecCCCcCCCcHHHHHHHHHHHHHCCeEEeccCCCEEEEECCCccCHHHHHHHHHHHHHHHHHHhcc
Confidence 998885421 2356789999999999987667899999999999999999999999999887553
No 40
>PRK07495 4-aminobutyrate aminotransferase; Provisional
Probab=100.00 E-value=1.8e-35 Score=253.10 Aligned_cols=219 Identities=36% Similarity=0.617 Sum_probs=194.1
Q ss_pred CCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEEeeccccCCccc
Q psy6548 19 NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYP 98 (242)
Q Consensus 19 ~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~sK~~~~g~~~ 98 (242)
.+++++|++||+++++|.++++++|+++|+++|++||+++|+||+|+|||++|..++++.+++.||++++||++++| +|
T Consensus 196 ~~~iaavi~EPv~g~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~a~~~~gv~pDi~tlsK~l~~G-~p 274 (425)
T PRK07495 196 PQRVAAIIIEPVQGEGGFYPAPAAFMKALRELCDQHGILLIADEVQTGFARTGKLFAMEHHEVAADLTTMAKGLAGG-FP 274 (425)
T ss_pred CCceEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhcCCcCCCceeecccCCCCCEEeehhhhcCC-cc
Confidence 46899999999999988888999999999999999999999999999999999877888889999999999999999 89
Q ss_pred hheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhhcCC--CCCCeEeeecee
Q psy6548 99 ISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELRSRLSP--DIVPVVRGKGLL 176 (242)
Q Consensus 99 ~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l~~~l~~--~~~~~~~~~~~~ 176 (242)
+|++++++++++.+.+..+.+||++++++++++.++++.++++++.++++++++++++.| +.+.. .....+.+.|.+
T Consensus 275 igav~~~~~i~~~~~~~~~~~T~~~~pl~~aaa~a~l~~l~~~~l~~~~~~~g~~l~~~L-~~l~~~~~~i~~vrG~Gl~ 353 (425)
T PRK07495 275 LAAVTGRAEIMDAPGPGGLGGTYGGNPLGIAAAHAVLDVIEEEDLCERANQLGNRLKQRL-ASLRETVPEIADIRGPGFM 353 (425)
T ss_pred ceEEEEcHHHHhccCCCCcCCCCCCCHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHH-HHHHhhCCCeeeeecCceE
Confidence 999999999999888777889999999999999999999988889999999999999999 66542 234566788999
Q ss_pred EEEEecCCc------hhHHHHHHHHHHCCceeccCC--CCEEEEeccCcCCHHHHHHHHHHHHHHHHHHhh
Q psy6548 177 NAIVLDKSI------LEVYDVCIKMKDAGLVTKPIS--NNIIRLSPALNITEQELREGLDIIINTINTMAA 239 (242)
Q Consensus 177 ~~~~~~~~~------~~~~~~~~~l~~~gi~~~~~~--~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~~~ 239 (242)
+|+++.... .....+.+.++++|+++.+.+ ++.+||.|++..|++++++++++|+++++++..
T Consensus 354 ~~iel~~~~~~~~~~~~~~~~~~~~~~~Gvl~~~~g~~~~~~r~~Ppl~it~~~id~~~~~l~~~l~~~~~ 424 (425)
T PRK07495 354 NAVEFNDADSGLPSAEFANRVRLKALEKGLILLTCGVHGNVIRFLAPITIQDDVFAEALDILEASILEASA 424 (425)
T ss_pred EEEEEecCCCCCccHHHHHHHHHHHHHCCeEEeecCCCCCEEEEeCCCccCHHHHHHHHHHHHHHHHHHhc
Confidence 999985431 124578888999999997653 489999999999999999999999999988653
No 41
>PRK00854 rocD ornithine--oxo-acid transaminase; Reviewed
Probab=100.00 E-value=1.7e-35 Score=252.87 Aligned_cols=232 Identities=47% Similarity=0.768 Sum_probs=199.0
Q ss_pred cccccCCCChhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCC
Q psy6548 3 LQFPVKSKQVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDV 81 (242)
Q Consensus 3 ~~~~~~~~d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~ 81 (242)
.+..+||+|++. +...++++++|++||+++++|.+.++++++++|+++|++||+++|+||+|+|+|++|..+..+..++
T Consensus 168 ~~~~~~~~d~~~le~~i~~~~~aii~e~~~~~~G~~~~~~~~l~~l~~l~~~~gi~lI~DEv~~g~g~~g~~~~~~~~g~ 247 (401)
T PRK00854 168 GFRVVPFGDAEALEAAITPNTVAFLVEPIQGEAGVIIPPAGYFTRVRELCTANNVTLILDEIQTGLGRTGKLLAEEHEGI 247 (401)
T ss_pred CeEEeCCCCHHHHHHHhCCCeEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCchHhHHhhcCC
Confidence 456789999998 5555568999999999999999999999999999999999999999999999988887555556788
Q ss_pred CCCEEEeeccccCCccchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhh
Q psy6548 82 RPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELRSR 161 (242)
Q Consensus 82 ~~~~~~~sK~~~~g~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l~~~ 161 (242)
.||++++||++++|++|+|++++++++++.+.+..+..+++.+++.++++.++++.++.+++.++++++++++++.| +.
T Consensus 248 ~~D~~~~~K~l~gg~~~ig~v~~~~~~~~~l~~~~~~~t~~~~~~~~aa~~a~L~~l~~~~~~~~~~~~~~~l~~~L-~~ 326 (401)
T PRK00854 248 EADVTLIGKALSGGFYPVSAVLSNSEVLGVLKPGQHGSTFGGNPLACAVARAALKVLTEEGMIENAAEMGAYFLEGL-RS 326 (401)
T ss_pred CCCEEEecccccCCccCeEEEEEcHHHHhcccCCCCCCCCCcCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHH-Hh
Confidence 89999999999988679999999999999888766777888999999999999998877778899999999999999 66
Q ss_pred cCCCCCCeEeeeceeEEEEecCCchhHHHHHHHHHHCCceeccCCCCEEEEeccCcCCHHHHHHHHHHHHHHHH
Q psy6548 162 LSPDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTIN 235 (242)
Q Consensus 162 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~ 235 (242)
+.........+.|.++.+.+..+.....++++.|.++||.+.+.+.+.+|++|++.++++++++++++|++++.
T Consensus 327 ~~~~~~~~~~g~g~~~~i~~~~~~~~~~~~~~~L~~~GV~v~~~~~~~lR~~p~~~~t~e~i~~~i~~l~~~l~ 400 (401)
T PRK00854 327 IRSNIVREVRGRGLMLAVELEPEAGGARQYCEALKERGLLAKDTHDHTIRLAPPLVITREQVDWALEQIAKVLA 400 (401)
T ss_pred hccCceEEEeccceEEEEEEecCchhHHHHHHHHHHCCeEEecCCCCEEEEeCCcccCHHHHHHHHHHHHHHhh
Confidence 65322334466788888776443245788999999999999887778999999999999999999999998763
No 42
>PRK06931 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional
Probab=100.00 E-value=1.1e-35 Score=256.41 Aligned_cols=216 Identities=31% Similarity=0.501 Sum_probs=192.2
Q ss_pred CCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEEeeccccCCccch
Q psy6548 20 PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPI 99 (242)
Q Consensus 20 ~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~sK~~~~g~~~~ 99 (242)
+++++||+||+++++|.++|+++|+++++++|++||+++|+||+++|||++|..++++++++.||+++++|++++| +|+
T Consensus 224 ~~iAAvI~EPiqg~gG~~~~~~~yl~~lr~lc~~~g~LlI~DEV~tGfGRtG~~~a~~~~gv~PDivt~gK~l~gG-~Pi 302 (459)
T PRK06931 224 RKPAAVILEAIQGEGGVNPAPVEWLQKIREVTQKHGILLIVDEVQAGFARTGKMFAFEHAGIEPDIIVMSKAVGGG-LPL 302 (459)
T ss_pred CceEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecchhcCCcCchHHHhhhcCCCCCEEEecccccCC-cce
Confidence 5699999999999999999999999999999999999999999999999999999999999999999999999999 899
Q ss_pred heeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhhcC--CCCCCeEeeeceeE
Q psy6548 100 SAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELRSRLS--PDIVPVVRGKGLLN 177 (242)
Q Consensus 100 g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l~~~l~--~~~~~~~~~~~~~~ 177 (242)
|.+++++++ +.+.+..+++||++||+++++++++++.++++++.++.+++.+++++.| +++. ......+.+.|.++
T Consensus 303 ~av~~~~~~-~~~~~~~~~~T~~gnpla~aaala~L~~l~~~~l~~~~~~~G~~l~~~L-~~l~~~~~~i~~vrG~Glm~ 380 (459)
T PRK06931 303 AVLGIKKEF-DAWQPGGHTGTFRGNQLAMATGLTTLKILKEENLAQNAAERGEWLKAQL-AELQKRYPCIGNVRGRGLMI 380 (459)
T ss_pred eeeeeHHHH-hhccCCCCCCCCCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH-HHHHHhCCCeEeEecCceEE
Confidence 998887664 6666667889999999999999999999998899999999999999999 6663 34567888999999
Q ss_pred EEEecCCc-------------hhHHHHHHHHHHCCceeccCC--CCEEEEeccCcCCHHHHHHHHHHHHHHHHHHh
Q psy6548 178 AIVLDKSI-------------LEVYDVCIKMKDAGLVTKPIS--NNIIRLSPALNITEQELREGLDIIINTINTMA 238 (242)
Q Consensus 178 ~~~~~~~~-------------~~~~~~~~~l~~~gi~~~~~~--~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~~ 238 (242)
.+++..+. .....+.+.|+++|+++.+.+ ++.+|+.|++.+|++|+++++++|++++.++.
T Consensus 381 giel~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gvl~~~~~~~~~~l~~~Ppl~it~~eid~~~~~l~~~l~~~~ 456 (459)
T PRK06931 381 GIEIVDERQPADAMGSYPADGELAAAIQKACFENGLLLERGGRNGNVVRLLPPLLITQAECEEFIDRFEQALLAAV 456 (459)
T ss_pred EEEEccCcccccccccCCccHHHHHHHHHHHHHCCcEEeecCCCCCEEEEECCCCcCHHHHHHHHHHHHHHHHHHH
Confidence 99985421 124568888999999997653 57899999999999999999999999998754
No 43
>PRK09264 diaminobutyrate--2-oxoglutarate aminotransferase; Validated
Probab=100.00 E-value=9e-36 Score=255.52 Aligned_cols=217 Identities=31% Similarity=0.571 Sum_probs=189.1
Q ss_pred CCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEEeeccccC-Cccc
Q psy6548 20 PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSG-GLYP 98 (242)
Q Consensus 20 ~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~sK~~~~-g~~~ 98 (242)
+++++|++||+++++|.++|+++|+++|+++|++||+++|+||+|+|||++|..+.++++++.||++++||++++ | +|
T Consensus 197 ~~~aavi~Epv~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG~GrtG~~~~~~~~~v~PDi~t~~K~l~~~G-~p 275 (425)
T PRK09264 197 DLPAAVIVETVQGEGGINVASAEWLQRLAKLCRKHDILLIVDDIQAGCGRTGTFFSFERAGITPDIVTLSKSISGYG-LP 275 (425)
T ss_pred CceEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCcEEEEechhhCCccccHHHHHhhcCCCCCEEEeccccCCCc-cc
Confidence 479999999999999988999999999999999999999999999999999988788888999999999999996 8 89
Q ss_pred hheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHH-HHHHhccHHHHHHHHHHHHHHHHHhhcCC--C-CCCeEeeec
Q psy6548 99 ISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTAL-DVILEENMIENAYKMGEIFRSELRSRLSP--D-IVPVVRGKG 174 (242)
Q Consensus 99 ~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l-~~~~~~~~~~~~~~~~~~l~~~l~~~l~~--~-~~~~~~~~~ 174 (242)
+|++++++++. .+.+..++.||++|+++++++.+++ +.++++++.++++++++++++.| +.+.. . ....+++.|
T Consensus 276 igav~~~~~i~-~~~~~~~~~T~~gnp~~~aaa~a~l~~~~~~~~l~~~~~~~g~~l~~~l-~~l~~~~~~~~~~vrg~G 353 (425)
T PRK09264 276 MALVLIKPELD-VWKPGEHNGTFRGNNLAFVTATAALEEYWSDDAFEKEVKAKGELVRERL-EEIAAKYPGLGAEVRGRG 353 (425)
T ss_pred eEEEEEchhhh-ccCCCccCCCCCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH-HHHHHhCCCceecceecc
Confidence 99999998873 5555567889999999999998999 56666679999999999999999 55531 2 224567889
Q ss_pred eeEEEEecCCchhHHHHHHHHHHCCceeccCC--CCEEEEeccCcCCHHHHHHHHHHHHHHHHHHhhh
Q psy6548 175 LLNAIVLDKSILEVYDVCIKMKDAGLVTKPIS--NNIIRLSPALNITEQELREGLDIIINTINTMAAK 240 (242)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~--~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~~~~ 240 (242)
++++++++.. .....+.+.++++|+++.+.+ ...||++|++.+|++++++++++|+++++++.+.
T Consensus 354 l~~~i~l~~~-~~~~~l~~~~~~~Gv~~~~~~~~~~~lr~~p~l~~t~~ei~~~~~~l~~~l~~~~~~ 420 (425)
T PRK09264 354 MMQGIDFGDG-ELAGKIAAEAFENGLIIETSGPEDEVVKLLPPLTIDEEELEEGLDILEEAVAEVLAE 420 (425)
T ss_pred cEEEEEecCh-HHHHHHHHHHHHCCCEEeccCCCCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999765 567889999999999998754 4799999999999999999999999999886543
No 44
>TIGR00709 dat 2,4-diaminobutyrate 4-transaminases. This family consists of L-diaminobutyric acid transaminases. This general designation covers both 2.6.1.76 (diaminobutyrate-2-oxoglutarate transaminase, which uses glutamate as the amino donor in DABA biosynthesis), and 2.6.1.46 (diaminobutyrate--pyruvate transaminase, which uses alanine as the amino donor). Most members with known function are 2.6.1.76, and at least some annotations as 2.6.1.46 in current databases at time of model revision are incorrect. A distinct branch of this family contains examples of 2.6.1.76 nearly all of which are involved in ectoine biosynthesis. A related enzyme is 4-aminobutyrate aminotransferase (EC 2.6.1.19), also called GABA transaminase. These enzymes all are pyridoxal phosphate-containing class III aminotransferase.
Probab=100.00 E-value=1.3e-35 Score=255.38 Aligned_cols=216 Identities=28% Similarity=0.475 Sum_probs=192.0
Q ss_pred CCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEEeeccccCCccch
Q psy6548 20 PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPI 99 (242)
Q Consensus 20 ~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~sK~~~~g~~~~ 99 (242)
++++++++||+++++|.++|+++|+++++++|++||+++|+||+++|||++|..++++++++.||++++||++++| +|+
T Consensus 205 ~~iaavi~Epi~g~~G~~~~~~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~a~~~~gv~PDiv~~gK~l~~G-~Pi 283 (442)
T TIGR00709 205 DKPAAVILEAIQGEGGVVAAPSEWLQKIREVTRKHDIKLILDEVQAGFGRSGTMFAFEHAGIEPDFVVMSKAVGGG-LPL 283 (442)
T ss_pred CceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCCCCchhHHHHcCCCCcEEEEcccccCC-ccc
Confidence 6899999999999999999999999999999999999999999999999999988888899999999999999999 999
Q ss_pred heeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhhcC--CCCCCeEeeeceeE
Q psy6548 100 SAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELRSRLS--PDIVPVVRGKGLLN 177 (242)
Q Consensus 100 g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l~~~l~--~~~~~~~~~~~~~~ 177 (242)
|+++++++ ++.+....+++||++||++++++.++++.++++++.++.+++++++++.| +++. ...+..+.+.|.++
T Consensus 284 gav~~~~~-~~~~~~~~~~~T~~gnpla~aaa~a~L~~i~~~~l~~~~~~~g~~l~~~L-~~l~~~~~~v~~vrG~Gl~~ 361 (442)
T TIGR00709 284 AVLLIAPE-FDAWQPAGHTGTFRGNQLAMVTGTEALNYWKDDNLAQNAQERGERITSFL-DDMIKEHPCIGNVRGRGLMQ 361 (442)
T ss_pred EEEEEchH-HhccCCCcCCCCCCcCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH-HHHHHhCCCeeeeeccceEE
Confidence 99999987 45555556789999999999999999999988899999999999999999 6653 24567889999999
Q ss_pred EEEecCCc-------------hhHHHHHHHHHHCCceeccCC--CCEEEEeccCcCCHHHHHHHHHHHHHHHHHHh
Q psy6548 178 AIVLDKSI-------------LEVYDVCIKMKDAGLVTKPIS--NNIIRLSPALNITEQELREGLDIIINTINTMA 238 (242)
Q Consensus 178 ~~~~~~~~-------------~~~~~~~~~l~~~gi~~~~~~--~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~~ 238 (242)
.+++..+. .....+...|+++|+++.+.+ ++.+|+.|++.+|++|++++++++++++.++.
T Consensus 362 ~ie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gvl~~~~~~~~~~l~~~Ppl~it~~ei~~~~~~l~~~l~~~~ 437 (442)
T TIGR00709 362 GIMIVDERQSKDATGAYPRDCELAAAIQGACFENGLLLETGGREGEVFRLLCPITIDQEECEEGISRFKQAVEEAL 437 (442)
T ss_pred EEEEccCcccccccccCCcchHHHHHHHHHHHHCCeEEeecCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 99985431 125678888999999997653 68999999999999999999999999998763
No 45
>PRK13360 omega amino acid--pyruvate transaminase; Provisional
Probab=100.00 E-value=1.4e-35 Score=254.81 Aligned_cols=217 Identities=34% Similarity=0.623 Sum_probs=190.4
Q ss_pred CCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEEeeccccCCccc
Q psy6548 19 NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYP 98 (242)
Q Consensus 19 ~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~sK~~~~g~~~ 98 (242)
.+++++|++||+++++|.++|+++|+++|+++|++||+++|+||+|+|||++|..++++++++.||++++||++++|++|
T Consensus 213 ~~~~aavivEpi~g~~G~~~~~~~fl~~lr~lc~~~g~llI~DEv~tG~GrtG~~~a~~~~gv~PDivt~gK~l~gG~~P 292 (442)
T PRK13360 213 ASTIAAVIVEPVAGSTGVLIPPKGYLQRLREICDKHGILLIFDEVITGFGRLGAPFAAQYFGVTPDLLTCAKGLTNGAIP 292 (442)
T ss_pred CCcEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCccchhhhhcCCCCceeeeeeccccCccc
Confidence 36899999999999999999999999999999999999999999999999999988888999999999999999988789
Q ss_pred hheeEeChhhhhccCCC-------CCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhhcCC-CCCCeE
Q psy6548 99 ISAVLADDEVMGTLVPG-------THGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELRSRLSP-DIVPVV 170 (242)
Q Consensus 99 ~g~~~~~~~~~~~l~~~-------~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l~~~l~~-~~~~~~ 170 (242)
+|.+++++++++.+... .+++||+++|++++++.++++.++++++.++.+++.+++++.| +++.. .....+
T Consensus 293 ~gav~~~~~i~~~~~~~~~~~~~~~~~~T~~g~pl~~aaa~a~L~~l~~~~l~~~~~~~g~~l~~~l-~~l~~~~~v~~v 371 (442)
T PRK13360 293 MGAVFVSSEIHDAFMQGPEAGIEFFHGYTYSGHPLACAAALATLDLYEREGLLTRAARLAPYWEDAL-HSLRDAPHVIDI 371 (442)
T ss_pred eEEEEEcHHHHHHhhcCCccccccccCCCCCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH-HHhhcCCCeeee
Confidence 99999999998876532 3678999999999999999999988889999999999999999 66642 234566
Q ss_pred eeeceeEEEEecCCc----hhHHHHHHHHHHCCceeccCCCCEEEEeccCcCCHHHHHHHHHHHHHHHHHH
Q psy6548 171 RGKGLLNAIVLDKSI----LEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINTM 237 (242)
Q Consensus 171 ~~~~~~~~~~~~~~~----~~~~~~~~~l~~~gi~~~~~~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~ 237 (242)
.+.|.++.+.+.... ..+.++.+.|+++|+++.+.+ +.+||+|++.+|++|+++++++|+++++++
T Consensus 372 rG~Gl~~~~~l~~~~~~~~~~~~~~~~~l~~~Gvl~~~~~-~~lr~~Ppl~~t~~eid~~~~~l~~~l~~~ 441 (442)
T PRK13360 372 RNLGLVGAVELAPRDGKPGKRAYEVFLKCFEKGLMIRYTG-DILALSPPLIIEEAQIDELFDILAQALKET 441 (442)
T ss_pred eccceEEEEEEecCCCCcchhHHHHHHHHHHCCcEEEecC-CEEEEeCCCccCHHHHHHHHHHHHHHHHHh
Confidence 788888887775321 235678889999999998764 689999999999999999999999999765
No 46
>PRK05630 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=100.00 E-value=7.2e-36 Score=255.11 Aligned_cols=215 Identities=29% Similarity=0.507 Sum_probs=192.1
Q ss_pred CCCEEEEEEccc-ccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEEeeccccCCcc
Q psy6548 19 NPNICAFMVEPI-QGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLY 97 (242)
Q Consensus 19 ~~~~~~i~~e~~-~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~sK~~~~g~~ 97 (242)
++++++|++||+ ++.+|.++|+++|+++|+++|++||+++|+||+++|||++|..++++++++.||+++++|+++|||+
T Consensus 198 ~~~iAAvi~EPi~qg~gG~~~~~~~~l~~lr~lc~~~g~llI~DEv~tG~GrtG~~~a~~~~gv~PDi~t~gK~l~gG~~ 277 (422)
T PRK05630 198 DETVAAIIIEPIVQGAGGMRFHDVALIEGVRTLCDKHDILLIADEIATGFGRTGELFATLAAGVTPDIMCVGKALTGGFM 277 (422)
T ss_pred hhceEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEecceeCCCcCchhhHHHhcCCCCCeeeeechhhcCcc
Confidence 478999999996 9999999999999999999999999999999999999999998888899999999999999999966
Q ss_pred chheeEeChhhhhccCC------CCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhhcCC-CCCCeE
Q psy6548 98 PISAVLADDEVMGTLVP------GTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELRSRLSP-DIVPVV 170 (242)
Q Consensus 98 ~~g~~~~~~~~~~~l~~------~~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l~~~l~~-~~~~~~ 170 (242)
++|++++++++++.+.. ..+++||++||++++++.++++.++++++.++++++.+++++.| +.+.. .....+
T Consensus 278 p~~av~~~~~i~~~~~~~~~~~~~~h~~T~~g~Pla~aaa~aaL~~l~~~~~~~~~~~~g~~l~~~L-~~l~~~~~v~~v 356 (422)
T PRK05630 278 SFAATLCTDKVAQLISTPNGGGALMHGPTFMANPLACAVAHASLEIIETGMWRKQVKRIEAELIAGL-SPLAHLPGVADV 356 (422)
T ss_pred ccceeeccHHHHHHHhccCCCCccccCCCCcCCHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHH-HHhhcCCCeeee
Confidence 99999999999887753 14788999999999999999999988888899999999999999 55542 234567
Q ss_pred eeeceeEEEEecCCchhHHHHHHHHHHCCceeccCCCCEEEEeccCcCCHHHHHHHHHHHHHHHHH
Q psy6548 171 RGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINT 236 (242)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~ 236 (242)
.+.|.++.+++..+ .....+.+.++++|+++.+.+ +.+||.|++..|++|+++++++|++++.+
T Consensus 357 Rg~Gl~~~ie~~~~-~~~~~~~~~~~~~Gl~~~~~g-~~l~~~PpL~it~~~i~~~~~~l~~al~~ 420 (422)
T PRK05630 357 RVLGAIGVVEMEQP-VDMEEATQAAVDHGVWLRPFG-RLVYVMPPYITTSEQIAQICAALAAAVKA 420 (422)
T ss_pred eccccEEEEEECCc-ccHHHHHHHHHHCCeEEEecC-CEEEEECCccCCHHHHHHHHHHHHHHHhc
Confidence 78899999999765 456789999999999998874 79999999999999999999999998864
No 47
>PTZ00125 ornithine aminotransferase-like protein; Provisional
Probab=100.00 E-value=3.1e-35 Score=251.33 Aligned_cols=236 Identities=58% Similarity=0.961 Sum_probs=201.9
Q ss_pred ccccCCCChhh--hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCC
Q psy6548 4 QFPVKSKQVPA--KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDV 81 (242)
Q Consensus 4 ~~~~~~~d~~~--~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~ 81 (242)
+..++|+|+++ +.+..+++++|++||++|++|.+.++++++++|+++|++||+++|+||+|+|+|++|..+..+.+++
T Consensus 159 ~~~~~~~d~~~le~~l~~~~~~~v~~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~lli~Dev~~g~g~~G~~~~~~~~~~ 238 (400)
T PTZ00125 159 FELVDYNDVEALEKLLQDPNVAAFIVEPIQGEAGVIVPDDGYLKQVYELCKKYNVLLIVDEIQTGLGRTGKLLAHDHEGV 238 (400)
T ss_pred ceEeCCCCHHHHHHHhCCCCeEEEEEcCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccchhhHHHhcCC
Confidence 45678899999 4454578999999999999999999999999999999999999999999999998887666666788
Q ss_pred CCCEEEeeccccCCccchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhh
Q psy6548 82 RPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELRSR 161 (242)
Q Consensus 82 ~~~~~~~sK~~~~g~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l~~~ 161 (242)
.||++++||++++|++|+|++++++++++.+.......+++.+++.++++.++++.++++++.++.+++.+.+++.| ++
T Consensus 239 ~pd~~~~sK~l~~g~~~ig~v~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~i~~~~~~~~~~~~~~~l~~~l-~~ 317 (400)
T PTZ00125 239 KPDIVLLGKALSGGLYPISAVLANDDVMLVIKPGEHGSTYGGNPLACAVAVEALEVLKEEKLAENAQRLGEVFRDGL-KE 317 (400)
T ss_pred CCCEEEEcccccCCCcCcEEEEEcHHHHhhccCCCCCCCCCcCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH-HH
Confidence 99999999999977469999999999999887766777888999999999999998887788889999999999999 55
Q ss_pred c-CC-CCCCeEeeeceeEEEEecCC-chhHHHHHHHHHHCCceeccCCCCEEEEeccCcCCHHHHHHHHHHHHHHHHHHh
Q psy6548 162 L-SP-DIVPVVRGKGLLNAIVLDKS-ILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINTMA 238 (242)
Q Consensus 162 l-~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~gi~~~~~~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~~ 238 (242)
+ .. .......+.|.++++.++.+ ......+.+.|.++||.+.|.+.+.+|++|++.++++++++++++|+++++++.
T Consensus 318 l~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~lRi~~~~~~~~~~i~~~l~~l~~~l~~~~ 397 (400)
T PTZ00125 318 LLKKSPWVKEIRGKGLLNAIVFDHSDGVNAWDLCLKLKENGLLAKPTHDNIIRFAPPLVITKEQLDQALEIIKKVLKSFD 397 (400)
T ss_pred HHhcCCCeEEEecccEEEEEEEccCcchHHHHHHHHHHHCCeEEeecCCCEEEEECCccCCHHHHHHHHHHHHHHHHHHh
Confidence 4 21 22333466788888888642 246778999999999999998889999999999999999999999999998875
Q ss_pred hh
Q psy6548 239 AK 240 (242)
Q Consensus 239 ~~ 240 (242)
.+
T Consensus 398 ~~ 399 (400)
T PTZ00125 398 SN 399 (400)
T ss_pred cC
Confidence 44
No 48
>PRK06082 4-aminobutyrate aminotransferase; Provisional
Probab=100.00 E-value=2e-35 Score=254.70 Aligned_cols=219 Identities=33% Similarity=0.544 Sum_probs=191.2
Q ss_pred CCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEEeeccccCCccc
Q psy6548 19 NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYP 98 (242)
Q Consensus 19 ~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~sK~~~~g~~~ 98 (242)
.+++++|++||+++++ .++|+++|+++|+++|++||+++|+||+++|||++|..|+++++|+.||++++||++++|++|
T Consensus 227 ~~~vAavIvEPv~g~g-~~~~~~~yl~~lr~lc~~~g~llI~DEV~tG~GRtG~~fa~e~~gv~PDiv~~gKgl~gG~~P 305 (459)
T PRK06082 227 EGGIGAFIAEAVRNTD-VQVPSKAYWKRVREICDKHNVLLIIDEIPNGMGRTGEWFTHQAYGIEPDILCIGKGLGGGLVP 305 (459)
T ss_pred CCCEEEEEECCccCCC-CcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCccchhhHhHhhCCCCCEEEecccccCCCCc
Confidence 3689999999999984 678999999999999999999999999999999999988889999999999999999988569
Q ss_pred hheeEeChhhhhccCCC-CCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhhcCC--CCCCeEeeece
Q psy6548 99 ISAVLADDEVMGTLVPG-THGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELRSRLSP--DIVPVVRGKGL 175 (242)
Q Consensus 99 ~g~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l~~~l~~--~~~~~~~~~~~ 175 (242)
+|.+++++++++..... .+ +|+++||++++++.++++.++++++.++++++.+++++.| +++.. ..+..+.+.|.
T Consensus 306 ~~av~~~~~i~~~~~~~~~~-~T~~gnpl~~aaa~a~L~~l~~~~l~~~~~~~g~~l~~~L-~~l~~~~~~i~~vrG~Gl 383 (459)
T PRK06082 306 IAAMITKDKYNTAAQISLGH-YTHEKSPLGCAAALATIEVIEQEGLLEKVKADSQFMRERL-LEMKAKYPLIGDVRGIGL 383 (459)
T ss_pred ceEEEEcHHHHhhccCCCCC-CCCCcCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH-HHHHhhCCCeeeeeeccc
Confidence 99999998877554322 24 7999999999999999999988889999999999999999 66632 45677889999
Q ss_pred eEEEEecCCc-------hhHHHHHHHHHHCCceeccCCCCEEEEeccCcCCHHHHHHHHHHHHHHHHHHhhh
Q psy6548 176 LNAIVLDKSI-------LEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINTMAAK 240 (242)
Q Consensus 176 ~~~~~~~~~~-------~~~~~~~~~l~~~gi~~~~~~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~~~~ 240 (242)
++.+++..+. .....+...++++|+++.+.+.+.+|++|++.+|+++++++++++++++.++.++
T Consensus 384 ~~~ve~~~~~~~~~~~~~~~~~~~~~~~~~Gvl~~~~~~~~i~~~Ppl~it~~eid~~~~~l~~~l~~~~~~ 455 (459)
T PRK06082 384 LWGVELVTDRHTKERAYDEAEAVLYRCLNNGLSFKVSQGNVIQLSPPLIITREELTQALAILEEAIAKICQD 455 (459)
T ss_pred eeEEEEccCccccCccHHHHHHHHHHHHhCCCEEEecCCCEEEEeCCCccCHHHHHHHHHHHHHHHHHHhhh
Confidence 9999986421 1245688889999999988777899999999999999999999999999987543
No 49
>PRK04013 argD acetylornithine/acetyl-lysine aminotransferase; Provisional
Probab=100.00 E-value=2.6e-35 Score=246.68 Aligned_cols=218 Identities=38% Similarity=0.603 Sum_probs=190.1
Q ss_pred ccccCCCChhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCC
Q psy6548 4 QFPVKSKQVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVR 82 (242)
Q Consensus 4 ~~~~~~~d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~ 82 (242)
+..+|+||++. +...++++++|++||+++++|..+++++|+++++++|++||+++|.||+++|+ ++|..++++++++.
T Consensus 144 ~~~~~~~d~~~l~~~i~~~~aAvivEpi~g~gG~~~~~~~yl~~lr~lc~~~gillI~DEv~tG~-RtG~~~a~~~~gv~ 222 (364)
T PRK04013 144 FKHIPFNDVEAAKEAITKETAAVIFEPIQGEGGIVPAKEEFVKTLRDLTEDVGALLIADEVQSGL-RTGKFLAIEHYKVE 222 (364)
T ss_pred cEEecCCCHHHHHHHhcCCcEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhcC-CCCchhHHHhcCCC
Confidence 45678999988 54445799999999999999999999999999999999999999999999999 99998888899999
Q ss_pred CCEEEeeccccCCccchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhhc
Q psy6548 83 PDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELRSRL 162 (242)
Q Consensus 83 ~~~~~~sK~~~~g~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l~~~l 162 (242)
||+++++|++++| +|+|.++.++++ .+..+++||++||++++++.++++.++++++.++.++. ++ .+
T Consensus 223 PDiv~~gK~lggG-~P~~a~~~~~~~----~~~~~~~T~~gnp~~~aaa~a~l~~i~~~~l~~~~~~~---l~-~l---- 289 (364)
T PRK04013 223 PDIVTMGKGIGNG-VPVSLTLTNFDV----ERGKHGSTFGGNPLACKAVAVTLRILRRERLVEKAGEK---FI-EI---- 289 (364)
T ss_pred CCEEEecccccCC-ceeEEEEecccc----cCCCcCCCCCcCHHHHHHHHHHHHHHHhccHHHHHHHH---HH-Hh----
Confidence 9999999999999 899999887664 33458899999999999999999999988888777664 22 22
Q ss_pred CCCCCCeEeeeceeEEEEecCCchhHHHHHHHHHHCCceeccCCCCEEEEeccCcCCHHHHHHHHHHHHHHHHHHh
Q psy6548 163 SPDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINTMA 238 (242)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~~ 238 (242)
.......+++.|.++.+++..+ ...+.+.++++|+++.+.+.+.+||.|++..|++++++++++|+++++++.
T Consensus 290 ~~~~v~~vRG~Gl~~gve~~~~---~~~i~~~~~~~Gll~~~~g~~vlr~~Ppl~it~~~i~~~~~~l~~~l~~~~ 362 (364)
T PRK04013 290 KGERVVTTRGRGLMIGIVLKKP---VGKYVEELQNRGYLVHTAGQRVIRLLPPLIISKDTMEEAKSAIEGVINDIL 362 (364)
T ss_pred ccCcceeeeeCcEEEEEEeCCc---HHHHHHHHHhCCcEEeeCCCCEEEEeCCcccCHHHHHHHHHHHHHHHHHHh
Confidence 2234567889999999999754 567889999999999988778999999999999999999999999998753
No 50
>PRK06917 hypothetical protein; Provisional
Probab=100.00 E-value=9.1e-36 Score=256.25 Aligned_cols=221 Identities=37% Similarity=0.613 Sum_probs=193.6
Q ss_pred CCEEEEEEcccccC-CCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEEeeccccCCccc
Q psy6548 20 PNICAFMVEPIQGE-AGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYP 98 (242)
Q Consensus 20 ~~~~~i~~e~~~~~-~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~sK~~~~g~~~ 98 (242)
+++++|++||++++ +|.++|+++|+++|+++|++||+++|+||+++|||++|..++++++++.||++++||++++||+|
T Consensus 198 ~~iAAvi~EPi~g~~gG~~~p~~~fl~~lr~lc~~~g~llI~DEv~tGfGRtG~~~a~~~~gv~PDi~~~gK~l~~G~~P 277 (447)
T PRK06917 198 EHIAAFIAEPIIGAAGAAVVPPKGYYKVIKEICDHYDILFIADEVMTGLGRTGAMFAMEHWGVEPDIMTLGKGLGAGYTP 277 (447)
T ss_pred CceEEEEEeccccCcCceecCCHHHHHHHHHHHHHcCCEEEEechhhCcCcccchhhHHhcCCCCCEEEeeehhccCCcc
Confidence 57999999999985 56889999999999999999999999999999999999988888999999999999999999559
Q ss_pred hheeEeChhhhhccCCC----CCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhhcCC--CCCCeEee
Q psy6548 99 ISAVLADDEVMGTLVPG----THGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELRSRLSP--DIVPVVRG 172 (242)
Q Consensus 99 ~g~~~~~~~~~~~l~~~----~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l~~~l~~--~~~~~~~~ 172 (242)
+|.+++++++++.+.+. .+++|+++||++++++.++++.++++++.++++++.+++++.| +++.. .....+.+
T Consensus 278 i~a~~~~~~i~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~l~~l~~~~l~~~~~~~g~~l~~~L-~~l~~~~~~i~~vrG 356 (447)
T PRK06917 278 IAATVVSDRVMEPILRGSRSIMSGHTLSANPLSAATALAVLEYMEKHNLPEKAAEKGEYLIKGL-QKVQQQSTIIGDVRG 356 (447)
T ss_pred eEEEEEcHHHHHHHhccCcccccccCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH-HHHHhcCCCEEEEee
Confidence 99999999998877542 3577999999999999999999988889999999999999999 66642 45667889
Q ss_pred eceeEEEEecCCc----------hhHHHHHHHHHHCCceeccCC-------CCEEEEeccCcCCHHHHHHHHHHHHHHHH
Q psy6548 173 KGLLNAIVLDKSI----------LEVYDVCIKMKDAGLVTKPIS-------NNIIRLSPALNITEQELREGLDIIINTIN 235 (242)
Q Consensus 173 ~~~~~~~~~~~~~----------~~~~~~~~~l~~~gi~~~~~~-------~~~lR~~~~~~~t~e~i~~~~~~l~~~l~ 235 (242)
.|.++.+++..+. .....+.+.|+++|+++.+.+ .+.+|++|++.+|++|+++++++|++++.
T Consensus 357 ~Gl~~~ie~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gvl~~~~~~~~~g~~~~~i~l~Ppl~it~~eid~~~~~l~~~l~ 436 (447)
T PRK06917 357 KGLLIGVEFVADKKTKQPFSKSQAVASELISVAAKNGLLLYPAVAGQDGKEGDAVIIAPPMTITYSELDELLSIFAKSVE 436 (447)
T ss_pred cceEEEEEEeccCCcCCCCcchhHHHHHHHHHHHhCCcEEEecccccCCCCCCEEEEECCCcCCHHHHHHHHHHHHHHHH
Confidence 9999999885320 235678899999999997652 57899999999999999999999999999
Q ss_pred HHhhhc
Q psy6548 236 TMAAKK 241 (242)
Q Consensus 236 ~~~~~~ 241 (242)
++.++.
T Consensus 437 ~~~~~~ 442 (447)
T PRK06917 437 EMMQKG 442 (447)
T ss_pred HHHHhc
Confidence 886543
No 51
>PRK09792 4-aminobutyrate transaminase; Provisional
Probab=100.00 E-value=2.3e-35 Score=252.59 Aligned_cols=215 Identities=30% Similarity=0.549 Sum_probs=191.5
Q ss_pred CCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEEeeccccCCccc
Q psy6548 19 NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYP 98 (242)
Q Consensus 19 ~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~sK~~~~g~~~ 98 (242)
.+++++|++||+++++|.++++++|+++|+++|++||+++|+||+++||+++|.+++++++++.||++++||++++| +|
T Consensus 196 ~~~iaavi~EPvq~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tg~gr~G~~~a~~~~~~~pDi~t~gK~l~~G-~p 274 (421)
T PRK09792 196 AKQVAAIIFEPVQGEGGFNVAPKELVAAIRRLCDEHGIVMIADEVQSGFARTGKLFAMDHYADKPDLMTMAKSLAGG-MP 274 (421)
T ss_pred CCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCCCCchhHHHhcCCCCcEEEeehhhcCC-Cc
Confidence 46899999999999999888999999999999999999999999999999999888888888999999999999999 89
Q ss_pred hheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhhcCC--CCCCeEeeecee
Q psy6548 99 ISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELRSRLSP--DIVPVVRGKGLL 176 (242)
Q Consensus 99 ~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l~~~l~~--~~~~~~~~~~~~ 176 (242)
+|++++++++++.+.+..+.+|+++|++++++++++++.++++++.++++++.+++++.| +.+.. .....+.+.|.+
T Consensus 275 igav~~~~~i~~~~~~~~~~~T~~gnpl~~aaa~a~l~~l~~~~~~~~~~~~g~~l~~~l-~~l~~~~p~v~~vrG~Gl~ 353 (421)
T PRK09792 275 LSGVVGNANIMDAPAPGGLGGTYAGNPLAVAAAHAVLNIIDKESLCERANQLGQRLKNTL-IDAKESVPAIAAVRGLGSM 353 (421)
T ss_pred eEEEEEcHHHHhccCCCCcCCCCCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH-HHHHHhCCCcceecccceE
Confidence 999999999999888777889999999999999999999988888899999999999999 66532 345677888999
Q ss_pred EEEEecCCc------hhHHHHHHHHHHCCceeccCC--CCEEEEeccCcCCHHHHHHHHHHHHHHHH
Q psy6548 177 NAIVLDKSI------LEVYDVCIKMKDAGLVTKPIS--NNIIRLSPALNITEQELREGLDIIINTIN 235 (242)
Q Consensus 177 ~~~~~~~~~------~~~~~~~~~l~~~gi~~~~~~--~~~lR~~~~~~~t~e~i~~~~~~l~~~l~ 235 (242)
+|+++.+.. .....+.+.++++|+++.+.+ ++.+||.|++..+++++++++++|++++.
T Consensus 354 ~~ie~~~~~~~~~~~~~~~~l~~~~~~~Gv~i~~~g~~~~~irl~P~l~i~~~ei~~~~~~l~~~l~ 420 (421)
T PRK09792 354 IAAEFNDPQTGEPSAAIAQKIQQRALAQGLLLLTCGAYGNVIRFLYPLTIPDAQFDAAMKILQDALS 420 (421)
T ss_pred EEEEecCCccCCcchHHHHHHHHHHHHCCcEEeecCCCCCEEEEeCCCcCCHHHHHHHHHHHHHHHh
Confidence 999997531 245778999999999997543 58999999999999999999999999875
No 52
>PRK05639 4-aminobutyrate aminotransferase; Provisional
Probab=100.00 E-value=3.3e-35 Score=253.05 Aligned_cols=218 Identities=35% Similarity=0.617 Sum_probs=193.8
Q ss_pred CCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEEeeccccCCccc
Q psy6548 19 NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYP 98 (242)
Q Consensus 19 ~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~sK~~~~g~~~ 98 (242)
.+++++|++||+++.+|.++|+++|+++|+++|++||+++|+||+++|||++|..|+.+++++.||+++++|++++| +|
T Consensus 220 ~~~iAAvI~EPiqg~gG~~~p~~~yl~~l~~lc~~~g~llI~DEv~tG~GrtG~~~a~~~~gv~PDiv~~gK~l~gG-~p 298 (457)
T PRK05639 220 PDEVAALFAEPIQGDAGIVVPPENFFKELKKLLDEHGILLVMDEVQTGIGRTGKWFASEWFEVKPDLIIFGKGVASG-MG 298 (457)
T ss_pred CCceEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhccCcCchHHHHHhcCCCCCEEEechhhcCC-Cc
Confidence 57899999999999999999999999999999999999999999999999999988888899999999999999999 89
Q ss_pred hheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhhcC--CCCCCeEeeecee
Q psy6548 99 ISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELRSRLS--PDIVPVVRGKGLL 176 (242)
Q Consensus 99 ~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l~~~l~--~~~~~~~~~~~~~ 176 (242)
+|++++++++++ .....+.+|+++||+++++++++++.++++++.++.+++.+++++.| +++. ......+.+.|.+
T Consensus 299 i~av~~~~~i~~-~~~~~~~~T~~g~p~~~aaa~a~l~~l~~~~l~~~~~~~g~~l~~~L-~~l~~~~~~~~~VrG~Gl~ 376 (457)
T PRK05639 299 LSGVIGRKELMD-LTSGSALLTPAANPVISAAAEATLEIIEEENLLKNALKVGEFIKKRL-LEMKESFEVIGDVRGKGLM 376 (457)
T ss_pred ceeEEehHHHHh-hcCCCcccCCCcCHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHH-HHHHHhCCCEEeeccceeE
Confidence 999999999988 33344678999999999999999999998899999999999999999 6653 2456678899999
Q ss_pred EEEEecCCc-----hhHHHHHHHHHHCCceeccCC--CCEEEEeccCcCCHHHHHHHHHHHHHHHHHHhh
Q psy6548 177 NAIVLDKSI-----LEVYDVCIKMKDAGLVTKPIS--NNIIRLSPALNITEQELREGLDIIINTINTMAA 239 (242)
Q Consensus 177 ~~~~~~~~~-----~~~~~~~~~l~~~gi~~~~~~--~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~~~ 239 (242)
+.+++..+. .....+.+.|+++|+++.+.+ .+.+||.|++.+|++|+++++++|+++++++.+
T Consensus 377 ~gve~~~~~~~~~~~~~~~~~~~~~~~Gv~~~~~g~~~~~lr~~Ppl~it~~~id~~~~~l~~~l~~~~~ 446 (457)
T PRK05639 377 IGVEIVKENGKPDPELTGKICWRAFELGLILPSYGMFGNVIRITPPLVITKEIAEKGLEIMERAIKDALA 446 (457)
T ss_pred EEEEEecCCCCCCHHHHHHHHHHHHhCCeEEeecCCCCCEEEEeCCCccCHHHHHHHHHHHHHHHHHHHH
Confidence 999885421 235678999999999998764 589999999999999999999999999988653
No 53
>PRK12403 putative aminotransferase; Provisional
Probab=100.00 E-value=3.8e-35 Score=253.21 Aligned_cols=219 Identities=26% Similarity=0.478 Sum_probs=191.0
Q ss_pred CCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEEeeccccCCccc
Q psy6548 19 NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYP 98 (242)
Q Consensus 19 ~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~sK~~~~g~~~ 98 (242)
.+++++|++||+++++|.+.|+++|+++|+++|++||+++|+||+++|||++|..++++++|+.||+++++|++++||+|
T Consensus 220 ~~~iaavI~Epv~g~gG~~~~~~~yl~~lr~lc~~~g~lLI~DEV~tGfGRtG~~~a~e~~gv~PDiv~~gK~lggG~~P 299 (460)
T PRK12403 220 AENVAGFVAEPFQGAGGMIFPPESYWPEIQRICRQYDVLLCADEVIGGFGRTGEWFAHEHFGFEPDTLSIAKGLTSGYVP 299 (460)
T ss_pred CCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCchhhhhhhcCCCCCeEEEcccccccccc
Confidence 36899999999999999999999999999999999999999999999999999988889999999999999999999669
Q ss_pred hheeEeChhhhhccCC----CCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHH-HHHHHHHHHHHhhcC--CCCCCeEe
Q psy6548 99 ISAVLADDEVMGTLVP----GTHGSTYGGNPLACKLAMTALDVILEENMIENAY-KMGEIFRSELRSRLS--PDIVPVVR 171 (242)
Q Consensus 99 ~g~~~~~~~~~~~l~~----~~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~-~~~~~l~~~l~~~l~--~~~~~~~~ 171 (242)
+|.+++++++++.+.. ..+++||++||+++++++++|+.++++++.++++ ++.+++++.| +++. ......+.
T Consensus 300 iga~v~~~~i~~~~~~~~~~~~~~~T~~gnPl~~Aaala~L~~i~~~~l~~~~~~~~g~~l~~~L-~~l~~~~~~i~~vr 378 (460)
T PRK12403 300 MGGLVLSKRIAEALVEQGGVFAHGLTYSGHPVAAAVAIANLKALRDEGVVTRVKDDTGPYLQRCL-REVFGDHPLVGEVQ 378 (460)
T ss_pred eEEEEECHHHHHHHhcCCCccccCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH-HHHHhcCCCEEeEe
Confidence 9999999998887743 2367899999999999999999998888899996 8999999999 5543 24567788
Q ss_pred eeceeEEEEecCCc----------hhHHHHHHHHHHCCceeccCCCCEEEEeccCcCCHHHHHHHHHHHHHHHHHHhh
Q psy6548 172 GKGLLNAIVLDKSI----------LEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINTMAA 239 (242)
Q Consensus 172 ~~~~~~~~~~~~~~----------~~~~~~~~~l~~~gi~~~~~~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~~~ 239 (242)
+.|.++.+++..+. .....+...++++|+++.+.+ +.+|++|++..|++|++++++.|++++.++.+
T Consensus 379 G~Gl~~gie~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gll~~~~~-~~~~l~Ppl~it~~eid~~~~~l~~al~~~~~ 455 (460)
T PRK12403 379 GAGLVAALQFAEDKATRKRFANENDLAWRCRTIGFEEGVIIRSTL-GRMIMAPALVAGRAEIDELVDKTRIAVDRTAR 455 (460)
T ss_pred ecceEEEEEEccCccccccccchhHHHHHHHHHHHhCCEEEEecC-CEEEEECCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999985431 013345677789999998763 56999999999999999999999999998754
No 54
>PRK09221 beta alanine--pyruvate transaminase; Provisional
Probab=100.00 E-value=3.4e-35 Score=252.53 Aligned_cols=216 Identities=33% Similarity=0.590 Sum_probs=190.6
Q ss_pred CCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEEeeccccCCccch
Q psy6548 20 PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPI 99 (242)
Q Consensus 20 ~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~sK~~~~g~~~~ 99 (242)
+++++|++||+++++|.+.|+++|+++++++|++||+++|+||+++|||++|..+.++++++.||++++||++++|++|+
T Consensus 217 ~~iAavi~Epv~g~~G~~~~~~~yl~~l~~lc~~~g~llI~DEV~tG~GRtG~~~~~~~~gv~PDi~~~gK~l~gG~~Pi 296 (445)
T PRK09221 217 STIAAVIVEPMAGSAGVLVPPKGYLQRLREICDKHGILLIFDEVITGFGRLGAAFAAERFGVTPDIITFAKGLTNGAIPM 296 (445)
T ss_pred CcEEEEEEecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhCCCcCchhhHHHhcCCCCCEEEeccccccCcccc
Confidence 68999999999999999999999999999999999999999999999999999888889999999999999999887899
Q ss_pred heeEeChhhhhccCC-------CCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhhcCC-CCCCeEe
Q psy6548 100 SAVLADDEVMGTLVP-------GTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELRSRLSP-DIVPVVR 171 (242)
Q Consensus 100 g~~~~~~~~~~~l~~-------~~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l~~~l~~-~~~~~~~ 171 (242)
|.+++++++++.+.. ..+++||++||+++++++++++.++++++.++.+++.+++++.| +++.. .....+.
T Consensus 297 ~av~~~~~i~~~~~~~~~~~~~~~~~~T~~~~pl~~aaa~a~L~~i~~~~l~~~~~~~g~~l~~~l-~~l~~~~~v~~vr 375 (445)
T PRK09221 297 GAVIASDEIYDAFMQGPEYAIEFFHGYTYSAHPVACAAGLATLDIYREEDLFERAAELAPYFEDAV-HSLKGLPHVIDIR 375 (445)
T ss_pred eeeEEcHHHHHhhccCcccccccccccCCCcCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH-HhhccCCCEEEEe
Confidence 999999998887643 23678999999999999999999988889999999999999999 66632 3345677
Q ss_pred eeceeEEEEecCCc----hhHHHHHHHHHHCCceeccCCCCEEEEeccCcCCHHHHHHHHHHHHHHHHHH
Q psy6548 172 GKGLLNAIVLDKSI----LEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINTM 237 (242)
Q Consensus 172 ~~~~~~~~~~~~~~----~~~~~~~~~l~~~gi~~~~~~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~ 237 (242)
+.|.++.+++.... ....++.+.|+++|+++.+. ++.+||+|++.+|++|+++++++|++++.++
T Consensus 376 g~Gl~~~v~~~~~~~~~~~~~~~~~~~~~~~Gv~~~~~-~~~lr~~Ppl~~t~~eid~~~~~l~~~l~~~ 444 (445)
T PRK09221 376 NIGLVAGIELAPRPGAPGARGYEAFMKCFEKGLLVRYT-GDTIALSPPLIIEKAQIDELVDALGDALRAV 444 (445)
T ss_pred cCceEEEEEEecccccccchHHHHHHHHHHCCeEEeec-CCEEEEECCccCCHHHHHHHHHHHHHHHHhh
Confidence 88889888875421 23467889999999999876 4789999999999999999999999999875
No 55
>PRK06916 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=100.00 E-value=2.9e-35 Score=253.92 Aligned_cols=219 Identities=39% Similarity=0.662 Sum_probs=193.8
Q ss_pred CCCEEEEEEcc-cccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEEeeccccCCcc
Q psy6548 19 NPNICAFMVEP-IQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLY 97 (242)
Q Consensus 19 ~~~~~~i~~e~-~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~sK~~~~g~~ 97 (242)
.+++++|++|| +++.+|.++|+++|+++++++|++||+++|+||+++|||++|..++++++++.||+++++|+++||++
T Consensus 221 ~~~iAAvi~EP~iqg~gG~~~~~~~fl~~lr~lc~~~g~llI~DEV~TG~GRtG~~~a~~~~gv~PDiv~~gK~l~gG~~ 300 (460)
T PRK06916 221 HEEIAAIIVEPLVQGAGGMITMPKGYLKGLRNLCTKYNVLFITDEVATGFGRTGKMFACEHENVTPDIMTAGKGLTGGYL 300 (460)
T ss_pred CCcEEEEEEeccccCCCCcccCCHHHHHHHHHHHHHcCCEEEeechhhCCCcCchhhHHHhcCCCCCeeeeehhhhcCcc
Confidence 47899999999 69999999999999999999999999999999999999999998898999999999999999999966
Q ss_pred chheeEeChhhhhccCC-------CCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhhcCC-CCCCe
Q psy6548 98 PISAVLADDEVMGTLVP-------GTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELRSRLSP-DIVPV 169 (242)
Q Consensus 98 ~~g~~~~~~~~~~~l~~-------~~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l~~~l~~-~~~~~ 169 (242)
|+|.+++++++++.+.+ ..+++|+++||++++++.++++.++++++.++++++.+++++.| +++.. .....
T Consensus 301 Pi~av~~~~ei~~~~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~l~~l~~~~l~~~~~~~g~~l~~~l-~~l~~~~~v~~ 379 (460)
T PRK06916 301 PIAITVTTDEIYNAFYGDYEEQKTFFHGHSYTGNPLGCAVALANLELYEKTNLIEQVARKTEYVATQL-EDLFALKHVGD 379 (460)
T ss_pred ccceeeecHHHHHHhhccccccCccccCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH-HHhhcCCCeEE
Confidence 99999999998876542 34778999999999999999999988889999999999999999 66643 34457
Q ss_pred EeeeceeEEEEecCCc----------hhHHHHHHHHHHCCceeccCCCCEEEEeccCcCCHHHHHHHHHHHHHHHHHHhh
Q psy6548 170 VRGKGLLNAIVLDKSI----------LEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINTMAA 239 (242)
Q Consensus 170 ~~~~~~~~~~~~~~~~----------~~~~~~~~~l~~~gi~~~~~~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~~~ 239 (242)
+.+.|.++.+++..+. .....+...|+++|+++.+.+ +.+||.|++.+|++|+++++++|++++.++..
T Consensus 380 vrG~Glm~giel~~~~~~~~~~~~~~~~~~~i~~~~~~~Gvl~~~~g-~~l~~~Ppl~it~~~id~~~~~l~~~l~~~~~ 458 (460)
T PRK06916 380 IRQLGLMVGIELVKNKETKEPFEWTERVGVQVCKRSRELGMLTRPLG-NTIVFMPPLASTIDELDEMLRILYKAISDVTE 458 (460)
T ss_pred eecCCceeeEEeecccccccCCCchhhHHHHHHHHHHHCCeEEEecC-CEEEEeCCcccCHHHHHHHHHHHHHHHHhhcc
Confidence 8889999999886431 013578899999999998864 68999999999999999999999999988654
No 56
>PRK08360 4-aminobutyrate aminotransferase; Provisional
Probab=100.00 E-value=9e-35 Score=249.82 Aligned_cols=219 Identities=38% Similarity=0.650 Sum_probs=194.9
Q ss_pred CCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEEeeccccCCccc
Q psy6548 19 NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYP 98 (242)
Q Consensus 19 ~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~sK~~~~g~~~ 98 (242)
.+++++|++||+++++|.++++++|++++.++|++||+++|+||+|+||+++|..++..++++.||++++||++++| +|
T Consensus 202 ~~~iAAvi~eP~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~G~~~a~~~~~~~pDiitlsK~l~~G-~p 280 (443)
T PRK08360 202 AEGVAALFAEPIQGDAGMIVPPEDYFKKLKKILDEHGILLVVDEVQSGLGRTGKWFAIEHFGVEPDIITLGKPLGGG-LP 280 (443)
T ss_pred CCCeEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCccchhhhhcCCCCCEEEecccccCC-ce
Confidence 37899999999999999999999999999999999999999999999999999876767789999999999999999 99
Q ss_pred hheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhhcC--CCCCCeEeeecee
Q psy6548 99 ISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELRSRLS--PDIVPVVRGKGLL 176 (242)
Q Consensus 99 ~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l~~~l~--~~~~~~~~~~~~~ 176 (242)
+|++++++++++.+....+.+|+++++++++++.++++.++++++.++++++.+++++.| +++. ......+.+.|.+
T Consensus 281 igav~~~~~i~~~~~~~~~~~T~~~~p~~~aaa~a~l~~l~~~~l~~~~~~~g~~l~~~L-~~l~~~~~~v~~vrg~Gl~ 359 (443)
T PRK08360 281 ISATIGRAEIMDSLPPLAHAFTLSGNPVASAAALAVIEEIEEKNLLKRAEKLGNYTKKRL-EEMKKKHELIGDVRGIGLM 359 (443)
T ss_pred eEEEEEcHHHHhhhcCCCCCCCCCcCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHH-HHHHHhCCCeeeeeccceE
Confidence 999999999999888766788999999999999999999988889999999999999999 6552 2355677889999
Q ss_pred EEEEecCCc-------hhHHHHHHHHHHCCceeccCCCCEEEEeccCcCCHHHHHHHHHHHHHHHHHHhh
Q psy6548 177 NAIVLDKSI-------LEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINTMAA 239 (242)
Q Consensus 177 ~~~~~~~~~-------~~~~~~~~~l~~~gi~~~~~~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~~~ 239 (242)
+.+++..+. ..+..+.+.|+++|+++.+...+.+|++|++.+|++|++++++++++++.++.+
T Consensus 360 ~gie~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~~~lr~~P~l~~t~~~id~~~~~l~~~l~~~~~ 429 (443)
T PRK08360 360 IGVDLVKDRETKERAYEEAAKVVWRAWELGLIVTFFSGNVLRIQPPLTIEKEVLDEGLDILEEAIEDVEE 429 (443)
T ss_pred EEEEEecCCcccCccHHHHHHHHHHHHHCCeEEeecCCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 999885431 235678999999999998766789999999999999999999999999988754
No 57
>PRK06541 hypothetical protein; Provisional
Probab=100.00 E-value=1.1e-34 Score=250.19 Aligned_cols=219 Identities=28% Similarity=0.525 Sum_probs=190.6
Q ss_pred CCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEEeeccccCCccc
Q psy6548 19 NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYP 98 (242)
Q Consensus 19 ~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~sK~~~~g~~~ 98 (242)
.+++++|++||+++++|.++++++|+++|+++|++||+++|+||+|+|||++|..++.+++++.||++++||++++|++|
T Consensus 219 ~~~~Aavi~EPv~g~~G~~~~~~~yl~~l~~lc~~~g~llI~DEV~tGfGR~G~~~a~~~~gv~PDivt~gK~l~~G~~p 298 (460)
T PRK06541 219 PDTVAAVFLEPVQNAGGCFPPPPGYFERVREICDRYDVLLVSDEVICAFGRLGEMFGCERFGYVPDIITCAKGITSGYSP 298 (460)
T ss_pred CCCEEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCchhhhhhhcCCCCCEEEecccccCCccc
Confidence 46899999999999999999999999999999999999999999999999999988888899999999999999999459
Q ss_pred hheeEeChhhhhccCCC----CCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhhcCC-CCCCeEeee
Q psy6548 99 ISAVLADDEVMGTLVPG----THGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELRSRLSP-DIVPVVRGK 173 (242)
Q Consensus 99 ~g~~~~~~~~~~~l~~~----~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l~~~l~~-~~~~~~~~~ 173 (242)
+|++++++++++.+.+. .+++|+++||+++++++++++.++.+++.++++++++++++.| +++.. .....+.+.
T Consensus 299 igav~~~~~i~~~~~~~~~~~~~~~T~~gnp~~~aaala~l~~l~~~~~~~~~~~~g~~l~~~L-~~l~~~~~v~~vrg~ 377 (460)
T PRK06541 299 LGAMIASDRLFEPFLDGPTMFLHGYTFGGHPVSAAVALANLDIFEREGLLDHVRDNEPAFRATL-EKLLDLPIVGDVRGD 377 (460)
T ss_pred eeEEEEcHHHHHHhhcCCCccccCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH-HHhhcCCCeEEEEec
Confidence 99999999988776532 4667999999999999999999988889999999999999999 66642 344567789
Q ss_pred ceeEEEEecCCc--------h-----hHHHHHHHHHHCCceeccC--CCCEEEEeccCcCCHHHHHHHHHHHHHHHHHHh
Q psy6548 174 GLLNAIVLDKSI--------L-----EVYDVCIKMKDAGLVTKPI--SNNIIRLSPALNITEQELREGLDIIINTINTMA 238 (242)
Q Consensus 174 ~~~~~~~~~~~~--------~-----~~~~~~~~l~~~gi~~~~~--~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~~ 238 (242)
|.++.+++..+. . ....+.+.|+++|+++.+. +.+.+||+|++.+|++|+++++++|++++.++.
T Consensus 378 Gl~~~ie~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~g~~~lrl~Ppl~~t~~~id~~~~~l~~~l~~~~ 457 (460)
T PRK06541 378 GYFYGIELVKDKATKETFTDDESERLLRGFLSPALFEAGLYCRADDRGDPVVQLAPPLISGQEEFDEIEQILRSVLTEAW 457 (460)
T ss_pred ceEEEEEEecCcccccCCcchhhhhhHHHHHHHHHHhCCeEEEecCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999985421 0 1135778999999999864 457899999999999999999999999998754
No 58
>PRK02627 acetylornithine aminotransferase; Provisional
Probab=100.00 E-value=1.2e-34 Score=247.28 Aligned_cols=228 Identities=41% Similarity=0.696 Sum_probs=197.0
Q ss_pred cccCCCChhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCC
Q psy6548 5 FPVKSKQVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRP 83 (242)
Q Consensus 5 ~~~~~~d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~ 83 (242)
..+||+|+++ +...++++++|++||+++++|..+++++++++|+++|++||+++|+||+|+||+++|..++.+..++.|
T Consensus 165 ~~~~~~d~~~l~~~i~~~~~~vii~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DE~~~g~g~~g~~~~~~~~~~~p 244 (396)
T PRK02627 165 IYVPFNDIEALKAAITDKTAAVMLEPIQGEGGVNPADKEYLQALRELCDENGILLILDEVQTGMGRTGKLFAYQHYGIEP 244 (396)
T ss_pred eEeCCCCHHHHHHhcCCCeEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhcCCCccCceeeehhcCCCC
Confidence 5578889998 554467899999999999999888899999999999999999999999999998888766666778889
Q ss_pred CEEEeeccccCCccchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhhcC
Q psy6548 84 DIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELRSRLS 163 (242)
Q Consensus 84 ~~~~~sK~~~~g~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l~~~l~ 163 (242)
|+++|||++++| +|+||+++++++++.+....+..+++.++++++++.++++.++.+++.++++++.+.+++.| +++.
T Consensus 245 di~t~sK~~~~G-~rig~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~~~~~~~~~~~~~~~~~~~l-~~~~ 322 (396)
T PRK02627 245 DIMTLAKGLGGG-VPIGAVLAKEKVADVFTPGDHGSTFGGNPLACAAALAVIEIIEEEGLLENAAEVGEYLRAKL-RELL 322 (396)
T ss_pred CEEEEcchhhCC-cccEEEEEcHHHHhccCCCCCCCCCCCCHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHH-HHHH
Confidence 999999999999 99999999999999888766778899999999999999998877778899999999999988 5542
Q ss_pred C--CCCCeEeeeceeEEEEecCCchhHHHHHHHHHHCCceeccCCCCEEEEeccCcCCHHHHHHHHHHHHHHHHHH
Q psy6548 164 P--DIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINTM 237 (242)
Q Consensus 164 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~ 237 (242)
. .......+.|.++|+.+.. +..++++.|.++||++.+.+.+.+|++|++.++++++++++++|+++++++
T Consensus 323 ~~~~~~~~~~~~g~~~~i~~~~---~~~~~~~~l~~~Gv~v~~~~~~~lRi~~~~~~~~~~i~~~~~~l~~~l~~~ 395 (396)
T PRK02627 323 EKYPGIKEVRGLGLMIGIELDR---PAAEIVKKALEKGLLINVTGDNVLRLLPPLIISKEEIDEAVDRLEEVLKEL 395 (396)
T ss_pred HhCCCeeeeccCcEEEEEEecC---cHHHHHHHHHHCCeEEeecCCCEEEEECCcccCHHHHHHHHHHHHHHHHhh
Confidence 1 2233455678899998833 578899999999999999877899999999999999999999999988753
No 59
>TIGR00700 GABAtrnsam 4-aminobutyrate aminotransferase, prokaryotic type. Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase.
Probab=100.00 E-value=9.3e-35 Score=249.16 Aligned_cols=215 Identities=37% Similarity=0.632 Sum_probs=189.5
Q ss_pred CCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEEeeccccCCccc
Q psy6548 19 NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYP 98 (242)
Q Consensus 19 ~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~sK~~~~g~~~ 98 (242)
.+++++|++||+++++|.++++++|+++|+++|++||+++|+||+|+||+++|..+++..+++.||++++||++++| +|
T Consensus 195 ~~~iAavi~Epi~g~~G~~~~~~~~l~~l~~lc~~~gillI~DEV~tg~gr~g~~~a~~~~~~~pDi~~lsK~l~~G-~p 273 (420)
T TIGR00700 195 ANNVAALVIEPVQGEGGFIVPAKGFVPALLDWCREHGIVFIADEVQTGFARTGAMFACEHEGPEPDLITTAKSLADG-LP 273 (420)
T ss_pred CCcEEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEEecccCCcccchhHHHhhcCCCCCEEEeeccccCC-cc
Confidence 57899999999999999999999999999999999999999999999999999877778889999999999999999 99
Q ss_pred hheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhhcCC--CCCCeEeeecee
Q psy6548 99 ISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELRSRLSP--DIVPVVRGKGLL 176 (242)
Q Consensus 99 ~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l~~~l~~--~~~~~~~~~~~~ 176 (242)
+||+++++++++.+.+..+.+|+++|+++++++.++++.++++++.+++++.++++++.| +.+.. .....+.+.|.+
T Consensus 274 ig~v~~~~~i~~~~~~~~~~~T~~~~pl~~aaa~a~l~~l~~~~~~~~~~~~g~~l~~~L-~~l~~~~~~~~~vrg~G~~ 352 (420)
T TIGR00700 274 LSGVTGRAEIMDAPAPGGLGGTYAGNPLACAAALAVLAIIESEGLIERARQIGRLVTDRL-TTLKAVDPRIGDVRGLGAM 352 (420)
T ss_pred eEEEEecHHHHhhcCCCCcCCCCCcCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH-HHHHhhCCCEEEeeccceE
Confidence 999999999999888777889999999999999999999888889999999999999999 55532 234456778999
Q ss_pred EEEEecCC------chhHHHHHHHHHHCCceeccCC--CCEEEEeccCcCCHHHHHHHHHHHHHHHH
Q psy6548 177 NAIVLDKS------ILEVYDVCIKMKDAGLVTKPIS--NNIIRLSPALNITEQELREGLDIIINTIN 235 (242)
Q Consensus 177 ~~~~~~~~------~~~~~~~~~~l~~~gi~~~~~~--~~~lR~~~~~~~t~e~i~~~~~~l~~~l~ 235 (242)
+++++... ......+.+.+.++||++.|++ ++.+||+|++..+++++++++++|+++++
T Consensus 353 ~~i~~~~~~~~~~~~~~~~~l~~~~~~~Gv~i~p~~~f~~~lRl~p~l~~~~~~l~~~~~~l~~~l~ 419 (420)
T TIGR00700 353 IAVELVDPGTTEPDAGLAERIATAAHAAGLLLLTCGMFGNIIRFLPPLTIGDELLSEGLDILCAILA 419 (420)
T ss_pred EEEEEecCCCCCccHHHHHHHHHHHHHCCeEEeccCCCCCEEEEECCCCcCHHHHHHHHHHHHHHhh
Confidence 99987421 1335678888889999998864 57999999998999999999999998874
No 60
>PRK06777 4-aminobutyrate aminotransferase; Provisional
Probab=100.00 E-value=1.2e-34 Score=248.11 Aligned_cols=215 Identities=35% Similarity=0.603 Sum_probs=188.9
Q ss_pred CCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEEeeccccCCccc
Q psy6548 19 NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYP 98 (242)
Q Consensus 19 ~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~sK~~~~g~~~ 98 (242)
.+++++|++||+++++|..+++++|+++|+++|++||+++|+||+|+||+++|..++..++++.||++++||++++| +|
T Consensus 196 ~~~iaavi~Epv~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tg~gr~g~~~~~~~~~~~pDiv~~sK~l~~G-~p 274 (421)
T PRK06777 196 PDQVAAILLEPIQGEGGFNVAPPEFMSALRTLCDEHGILLIADEVQTGFARTGKLFAMEYYDVKPDLITMAKSLGGG-MP 274 (421)
T ss_pred CCceEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCccCCchhhhhhcCCCCCEEeeehhhcCC-Cc
Confidence 36899999999999999889999999999999999999999999999999999877778889999999999999999 99
Q ss_pred hheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhhcCC--CCCCeEeeecee
Q psy6548 99 ISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELRSRLSP--DIVPVVRGKGLL 176 (242)
Q Consensus 99 ~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l~~~l~~--~~~~~~~~~~~~ 176 (242)
+|++++++++++.+.+..+.+|+++|+++++++.++++.++++++.++++++++++++.| +++.. .....+.+.|.+
T Consensus 275 igav~~~~~i~~~~~~~~~~~T~~~~p~~~aaa~a~L~~~~~~~l~~~~~~~g~~l~~~L-~~l~~~~~~i~~vrg~G~~ 353 (421)
T PRK06777 275 ISAVVGRAEVMDAPAPGGLGGTYAGNPLAVAAALAVLDVIAEEKLCQRALILGAHLVEVL-EKAKASCPAIVDIRARGSM 353 (421)
T ss_pred eEEEEEcHHHHhccCCCCCCCCCCcCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH-HHHHHhCCCeEEecCceEE
Confidence 999999999999888777888999999999999999999888889999999999999999 66532 344556788888
Q ss_pred EEEEecCCc------hhHHHHHHHHHHCCceeccCC--CCEEEEeccCcCCHHHHHHHHHHHHHHHH
Q psy6548 177 NAIVLDKSI------LEVYDVCIKMKDAGLVTKPIS--NNIIRLSPALNITEQELREGLDIIINTIN 235 (242)
Q Consensus 177 ~~~~~~~~~------~~~~~~~~~l~~~gi~~~~~~--~~~lR~~~~~~~t~e~i~~~~~~l~~~l~ 235 (242)
+.+++..+. .....+.+.++++|+++.+++ ++.+||.|++..+++++++++++|++.+.
T Consensus 354 ~~i~~~~~~~~~~~~~~~~~l~~~~~~~Gv~i~~~~~~g~~lr~~ppl~i~~~~i~~~~~~l~~~l~ 420 (421)
T PRK06777 354 VAVEFNDPQTGKPSPEFTRQYQRQALEEGLLLLSCGVHGNVIRFLYPLTIPDAQFSKALNILTRLLA 420 (421)
T ss_pred EEEEEecCccCCccHHHHHHHHHHHHhCCeEEeecCCCCCEEEEeCCCCCCHHHHHHHHHHHHHHHh
Confidence 888765320 234567777889999998864 47999999999999999999999998874
No 61
>COG0001 HemL Glutamate-1-semialdehyde aminotransferase [Coenzyme metabolism]
Probab=100.00 E-value=6.1e-35 Score=241.30 Aligned_cols=234 Identities=27% Similarity=0.394 Sum_probs=198.4
Q ss_pred ccccccCCCChhh--hcCCC--CCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccc
Q psy6548 2 SLQFPVKSKQVPA--KLKSN--PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIH 77 (242)
Q Consensus 2 ~~~~~~~~~d~~~--~~~~~--~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~ 77 (242)
.+++.+||||+++ +.+.+ +++++||+||+.++.|.+.|.++|++.|+++|++||++||.||+++|| +.+.+++..
T Consensus 177 ~~ti~~~yND~~al~~~~~~~g~~IAaVIvEPv~gn~g~i~p~~~Fl~~Lr~lt~e~G~lLI~DEViTGF-R~~~gGaq~ 255 (432)
T COG0001 177 KHTLVLPYNDLEALEEAFEEYGDDIAAVIVEPVAGNMGVVPPEPGFLEGLRELTEEHGALLIFDEVITGF-RVALGGAQG 255 (432)
T ss_pred ccEEEecCCCHHHHHHHHHHcCCcEEEEEeccccCCCCCCCCCHHHHHHHHHHHHHcCcEEEEecchhhc-ccCCccccc
Confidence 4678999999999 55553 699999999999999999999999999999999999999999999998 565567888
Q ss_pred cCCCCCCEEEeeccccCCccchheeEeChhhhhccCCC---CCCCCCCCCHHHHHHHHHHHHHHHh-ccHHHHHHHHHHH
Q psy6548 78 YEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPG---THGSTYGGNPLACKLAMTALDVILE-ENMIENAYKMGEI 153 (242)
Q Consensus 78 ~~~~~~~~~~~sK~~~~g~~~~g~~~~~~~~~~~l~~~---~~~~~~~~~~~~~~~a~a~l~~~~~-~~~~~~~~~~~~~ 153 (242)
.+++.||+.+++|.+||| +|+|.+.++.++|+.+.+. .+.+|+++||++++|+.++++.+.. ++..+++.++.++
T Consensus 256 ~~gi~PDlttlGKiIGGG-lP~ga~gGr~eiM~~~~p~g~vyqaGT~sgnplamaAG~atl~~l~~~~~~y~~l~~~~~~ 334 (432)
T COG0001 256 YYGVEPDLTTLGKIIGGG-LPIGAFGGRAEIMEQLAPLGPVYQAGTLSGNPLAMAAGLATLEELMTEEGVYERLDALGER 334 (432)
T ss_pred ccCcCcchhhhhhhhcCC-cceeeeccHHHHHhhhCCCCCccccCCCCCcHHHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 999999999999999999 9999999999999988764 6778999999999999999999887 4589999999999
Q ss_pred HHHHHHhhcC-CCCCCeEeeeceeEEEEecCCc------------hhHHHHHHHHHHCCceeccCCCCEEEEeccCcCCH
Q psy6548 154 FRSELRSRLS-PDIVPVVRGKGLLNAIVLDKSI------------LEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITE 220 (242)
Q Consensus 154 l~~~l~~~l~-~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~l~~~gi~~~~~~~~~lR~~~~~~~t~ 220 (242)
|++.|++.+. .++.......|.++.+.+.... .....+.+.|+++||++.|..-...-+| ..+++
T Consensus 335 L~~gl~~~~~~~g~~~~v~~~gsm~~i~F~~~~~~n~~da~~sd~~~~~~~~~~~l~~GV~l~ps~~ea~flS--~ahte 412 (432)
T COG0001 335 LAEGLRAAAERHGIPLTVNRVGSMFGIFFTEEGVRNYADAKRSDVERFAKFFHHLLNRGVYLAPSQFEAGFLS--TAHTE 412 (432)
T ss_pred HHHHHHHHHHHhCCCeEEeeecceEEEEecCCCCCCHHHHHhhchHHHHHHHHHHHhCCcccCCccccceeee--cccCH
Confidence 9999954443 2566677777777877776631 1234567799999999999753434444 67999
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q psy6548 221 QELREGLDIIINTINTMAA 239 (242)
Q Consensus 221 e~i~~~~~~l~~~l~~~~~ 239 (242)
++|++.++.++++++++..
T Consensus 413 ~di~~~~~a~~~~~~~~~~ 431 (432)
T COG0001 413 EDIDRTLEAADEAFKELAG 431 (432)
T ss_pred HHHHHHHHHHHHHHHHhhc
Confidence 9999999999999988653
No 62
>PRK05769 4-aminobutyrate aminotransferase; Provisional
Probab=100.00 E-value=4.6e-34 Score=245.46 Aligned_cols=215 Identities=41% Similarity=0.670 Sum_probs=191.1
Q ss_pred CCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEEeeccccCCccc
Q psy6548 19 NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYP 98 (242)
Q Consensus 19 ~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~sK~~~~g~~~ 98 (242)
.+++++|++||+++++|.++|+++|+++|.++|++||+++|+||+|+|||++|..++++.+++.||++++||++++| +|
T Consensus 219 ~~~iaavi~Epv~g~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~tG~gr~G~~~a~~~~gv~pDivt~~K~l~~G-~p 297 (441)
T PRK05769 219 PEEVAAIIVEPIQGEGGYVVPPKNFFKELRKLADKYGILLIDDEVQTGMGRTGKMFAIEHFGVEPDIITLAKAIAGG-LP 297 (441)
T ss_pred CCceEEEEECcccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCcccceehhhccCCCCCEEEEcccccCC-cc
Confidence 46899999999999999999999999999999999999999999999999999887888889999999999999999 89
Q ss_pred hheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhhcC--CCCCCeEeeecee
Q psy6548 99 ISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELRSRLS--PDIVPVVRGKGLL 176 (242)
Q Consensus 99 ~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l~~~l~--~~~~~~~~~~~~~ 176 (242)
+|+++++++++... ...+++|+++++++++++.++++.+++ ++.++++++.+++++.| +++. ......+.+.|.+
T Consensus 298 ~gav~~~~~i~~~~-~~~~~~T~~g~p~~~aaa~a~L~~l~~-~~~~~~~~~g~~l~~~L-~~l~~~~~~~~~vrg~G~~ 374 (441)
T PRK05769 298 LGAVIGRAELMFLP-PGSHANTFGGNPVAAAAALATLEELEE-GLLENAQKLGEYLRKEL-KELKEKYEFIGDVRGLGLM 374 (441)
T ss_pred cEEEEEehhhhhcC-CCCCCCCCCcCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH-HHHHHhCCCeeeeecceEE
Confidence 99999999887644 446788999999999999999999988 99999999999999999 6654 2345577888999
Q ss_pred EEEEecCCc-----hhHHHHHHHHHHCCceeccCCCCEEEEeccCcCCHHHHHHHHHHHHHHHHHH
Q psy6548 177 NAIVLDKSI-----LEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINTM 237 (242)
Q Consensus 177 ~~~~~~~~~-----~~~~~~~~~l~~~gi~~~~~~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~ 237 (242)
+.+++..+. .....+.+.|+++|+++.+.+.+.+||+|++.+|++|++++++++++++.++
T Consensus 375 ~~i~~~~~~~~~~~~~~~~~~~~~~~~Gil~~~~~~~~lr~~p~l~~t~~~id~~~~~l~~~l~~~ 440 (441)
T PRK05769 375 IGVELVKDRKEPDPKLRDKVLYEAFKRGLLLLGAGKSAIRIIPPLIITEEEADIGLEILEEAIKEL 440 (441)
T ss_pred EEEEeccCCccccHHHHHHHHHHHHhCCcEEecCCCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 999885431 2356788899999999988777899999999999999999999999998764
No 63
>PRK06918 4-aminobutyrate aminotransferase; Reviewed
Probab=100.00 E-value=8.3e-34 Score=245.10 Aligned_cols=220 Identities=36% Similarity=0.655 Sum_probs=192.2
Q ss_pred CCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEEeeccccCCccc
Q psy6548 19 NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYP 98 (242)
Q Consensus 19 ~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~sK~~~~g~~~ 98 (242)
.+++++|++||+++.+|.++|+++|+++|+++|++||+++|+||+|+||+++|..+++..+++.||++++||++++| +|
T Consensus 217 ~~~iAavi~EPi~g~gG~~~~~~~~l~~l~~l~~~~gillI~DEV~tg~gr~g~~~a~~~~~v~pDi~t~sK~l~~G-~p 295 (451)
T PRK06918 217 PETIAAVVMEPVQGEGGFIVPSKKFVQEVRNICSEHGILFVADEIQTGFARTGKYFAIEHFDVVPDLITVSKSLGAG-VP 295 (451)
T ss_pred CCceEEEEECcccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCcCccCceehhHhcCCCCCEEeeehhhcCC-Cc
Confidence 46899999999999999999999999999999999999999999999999999877777888899999999999999 99
Q ss_pred hheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhhcC--CCCCCeEeeecee
Q psy6548 99 ISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELRSRLS--PDIVPVVRGKGLL 176 (242)
Q Consensus 99 ~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l~~~l~--~~~~~~~~~~~~~ 176 (242)
+||+++++++++.+.+..+..|+++++++++++.++++.++++++.+++++++++++++| +.+. ......+.+.|.+
T Consensus 296 ig~v~~~~~i~~~~~~~~~~~T~~g~~l~~aaa~a~l~~i~~~~~~~~~~~~g~~l~~~l-~~l~~~~~~~~~vrg~G~~ 374 (451)
T PRK06918 296 ISGVIGRKEIMDESAPGELGGTYAGSPLGCAAALAVLDIIEKENLNDRAIELGKVVMNRF-EEMKNKYNCIGDVRGLGAM 374 (451)
T ss_pred cEEEEEcHHHHhccCCCCcCcCCCcCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH-HHHHhhCCCceeeccceeE
Confidence 999999999999888777889999999999999999999988889999999999999999 6653 2334456677888
Q ss_pred EEEEecC-------CchhHHHHHHHHHHCCceeccCC--CCEEEEeccCcCCHHHHHHHHHHHHHHHHHHhhh
Q psy6548 177 NAIVLDK-------SILEVYDVCIKMKDAGLVTKPIS--NNIIRLSPALNITEQELREGLDIIINTINTMAAK 240 (242)
Q Consensus 177 ~~~~~~~-------~~~~~~~~~~~l~~~gi~~~~~~--~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~~~~ 240 (242)
+.+.+.. +......+.+.|.++||++.+.+ ++.+|++|++.++++++++++++|++++.++..+
T Consensus 375 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Gvlv~~~~~~~~~lrl~p~l~~t~~~id~~l~~l~~~l~~~~~~ 447 (451)
T PRK06918 375 CAFELVQDRKTKEPDKTLTANICKEANKRGLLLLSAGTYGNVIRVLMPLVITDEQLEEGLTIIEESLQACYEK 447 (451)
T ss_pred EEEEEccCCCcCCCcHHHHHHHHHHHHHCCeEEeecCCCCCEEEEECCCccCHHHHHHHHHHHHHHHHHHHHh
Confidence 8877631 11346678888899999998864 4889999999899999999999999999887554
No 64
>PRK06148 hypothetical protein; Provisional
Probab=100.00 E-value=6e-34 Score=264.73 Aligned_cols=217 Identities=29% Similarity=0.510 Sum_probs=195.5
Q ss_pred CCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCc-ccccccCCCCCCEEEeeccccCCcc
Q psy6548 19 NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGK-LLAIHYEDVRPDIVILGKALSGGLY 97 (242)
Q Consensus 19 ~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~-~~~~~~~~~~~~~~~~sK~~~~g~~ 97 (242)
.+++++||+||+++++|.++|+++|+++++++|++||+++|+||+++|||++|. .|+++++|+.||+++++|++++| +
T Consensus 782 ~~~iAAvI~EPv~g~gG~i~pp~~yl~~lr~lc~~~g~llI~DEVqtGfGRtG~~~~a~e~~gv~PDivt~gK~lggG-~ 860 (1013)
T PRK06148 782 GRGPAFFIAESIPSVAGQIFLPEGYLREVYAMVRAAGGVCIADEVQVGFGRVGSHWWAFETQGVVPDIVTMGKPIGNG-H 860 (1013)
T ss_pred CCceEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHhCCEEEEEecccCCCCCCCcchhhhhcCCCcceeeecccccCC-c
Confidence 367999999999999999999999999999999999999999999999999996 67889999999999999999999 8
Q ss_pred chheeEeChhhhhccCCC-CCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhhcC--CCCCCeEeeec
Q psy6548 98 PISAVLADDEVMGTLVPG-THGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELRSRLS--PDIVPVVRGKG 174 (242)
Q Consensus 98 ~~g~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l~~~l~--~~~~~~~~~~~ 174 (242)
|+|.+++++++++.+.+. .+.+||++||+++++++++++.++++++.++.+++.+++++.| +++. ......+.+.|
T Consensus 861 Plgav~~~~ei~~~~~~g~~~~~Tf~gnpla~aaa~a~L~~i~~e~l~~~~~~~G~~l~~~L-~~l~~~~~~i~~VrG~G 939 (1013)
T PRK06148 861 PMGAVVTTREIADSFDNGMEYFNTFGGNPVSCAIGLAVLDIIEDEDLQRNALEIGNYLLAGL-RELQDRFDIIGDVRGMG 939 (1013)
T ss_pred ceEEEEEcHHHHhhccCCCccccCCCCCHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHH-HHHHHhCCCceEEeeec
Confidence 999999999999988765 3778999999999999999999998899999999999999999 6663 24567889999
Q ss_pred eeEEEEecCCc-------hhHHHHHHHHHHCCceeccCC--CCEEEEeccCcCCHHHHHHHHHHHHHHHHHH
Q psy6548 175 LLNAIVLDKSI-------LEVYDVCIKMKDAGLVTKPIS--NNIIRLSPALNITEQELREGLDIIINTINTM 237 (242)
Q Consensus 175 ~~~~~~~~~~~-------~~~~~~~~~l~~~gi~~~~~~--~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~ 237 (242)
.++.+++..+. .....+.+.|+++||++.+.+ .+.+||.|++.+|++++++++++|++++.++
T Consensus 940 l~~gvel~~~~~~~~~~~~~~~~i~~~~~~~Gvl~~~~g~~~~vlr~~Ppl~it~~~id~~l~~l~~~l~~~ 1011 (1013)
T PRK06148 940 LFLGIELVTDRKTKAPATAIARYVKNGARERGILIGTEGPHDNVLKIRPPLIFSRADADHLLEVLDDVLAAA 1011 (1013)
T ss_pred eEEEEEecCCccccCccHHHHHHHHHHHHhCCeEEeccCCCCCEEEEeCCccCCHHHHHHHHHHHHHHHHHH
Confidence 99999986431 235678899999999998764 4899999999999999999999999999875
No 65
>PRK04260 acetylornithine aminotransferase; Provisional
Probab=100.00 E-value=1.3e-33 Score=239.31 Aligned_cols=223 Identities=35% Similarity=0.604 Sum_probs=193.4
Q ss_pred cCCCChhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCE
Q psy6548 7 VKSKQVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDI 85 (242)
Q Consensus 7 ~~~~d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~ 85 (242)
+++||++. +...++++++|++||+++++|.+.++.++++++.++|++||+++|+||+|+|+++.|.++....+++.||+
T Consensus 150 ~~~~dl~~l~~~l~~~~a~vi~e~v~~~~G~~~~~~~~l~~~~~l~~~~~~~~i~De~~~g~g~~g~~~~~~~~~~~pdi 229 (375)
T PRK04260 150 AIFNDLNSVKALVNKNTAAVMLELVQGESGVLPADKDFVKALADYCQETGILLIVDEVQTGMGRTGKLYAFEHYGIEPDI 229 (375)
T ss_pred eCCCCHHHHHHhcCCCeEEEEECCeECCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCcccchhhhHhhCCCCCE
Confidence 46889998 55555689999999999999999999999999999999999999999999999888876565567889999
Q ss_pred EEeeccccCCccchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhhcCC-
Q psy6548 86 VILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELRSRLSP- 164 (242)
Q Consensus 86 ~~~sK~~~~g~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l~~~l~~- 164 (242)
++|||++++| +|+|++++++++++.+....+..++++++++++++.++++.++.+++.+++++..+.+++.+.+.+..
T Consensus 230 ~t~sK~l~~G-~~ig~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 308 (375)
T PRK04260 230 FTLAKGLANG-VPVGAMLAKSSLGGAFGYGSHGSTFGGNKLSMAAASATLDIMLTAGFLEQALENGNYLQEQLQKALQDK 308 (375)
T ss_pred EEecccccCC-cceEEEEEcHHHHhhcCCCCCCCCCCcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 9999999999 89999999999999888767788999999999999999998877778888999999999888433332
Q ss_pred CCCCeEeeeceeEEEEecCCchhHHHHHHHHHHCCceeccCCCCEEEEeccCcCCHHHHHHHHHHHHHH
Q psy6548 165 DIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINT 233 (242)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~lR~~~~~~~t~e~i~~~~~~l~~~ 233 (242)
......++.|+++|+++.. +..++.+.|.++||.+.+.+.+.+|++|++.++++++++++++|+++
T Consensus 309 ~~~~~~~~~g~~~~~~~~~---~~~~~~~~l~~~Gi~v~~~~~~~lR~~~~~~~t~~~i~~~l~~l~~~ 374 (375)
T PRK04260 309 ETVTTVRGLGYMIGIETTA---DLSQLVEAARDKGLIVLTAGTNVIRLLPPLTLTKEEIEQGIAILSEV 374 (375)
T ss_pred CCeeEEeccceEEEEEecC---cHHHHHHHHHhCCCEEecCCCCEEEEcCCCccCHHHHHHHHHHHHHh
Confidence 2334556689999999843 46789999999999999887789999999999999999999999875
No 66
>PLN02482 glutamate-1-semialdehyde 2,1-aminomutase
Probab=100.00 E-value=4.2e-34 Score=246.43 Aligned_cols=230 Identities=21% Similarity=0.304 Sum_probs=188.5
Q ss_pred cccccCCCChhh--hcCC--CCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCccccccc
Q psy6548 3 LQFPVKSKQVPA--KLKS--NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHY 78 (242)
Q Consensus 3 ~~~~~~~~d~~~--~~~~--~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~ 78 (242)
.++.+||||+++ +.+. .+++++|++||+++++|.++|+++|+++|+++|++||+++|+||+++|| ++|..++.++
T Consensus 224 ~~~~~~~nd~~~l~~~l~~~~~~iAavI~Epv~g~~G~i~p~~~fl~~lr~lc~~~g~lLI~DEV~tGf-R~g~~ga~~~ 302 (474)
T PLN02482 224 ATLTAPYNDLEAVKKLFEANKGEIAAVILEPVVGNSGFIVPKKEFLEGLREITKENGALLVFDEVMTGF-RIAYGGAQEY 302 (474)
T ss_pred CeEEecCCChHHHHHHHHhCCCceEEEEECCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCe-ecCcchHhHH
Confidence 357799999998 3443 4689999999999999999999999999999999999999999999999 8888778788
Q ss_pred CCCCCCEEEeeccccCCccchheeEeChhhhhccCC---CCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Q psy6548 79 EDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVP---GTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFR 155 (242)
Q Consensus 79 ~~~~~~~~~~sK~~~~g~~~~g~~~~~~~~~~~l~~---~~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~ 155 (242)
+++.||+++++|+++|| +|+|.+.+++++++.+.+ ..+++||++||+++++++++|+.++++++.++++++.++++
T Consensus 303 ~gv~PDi~t~gK~lggG-~Pigav~g~~ei~~~~~~~~~~~~~~T~~gnpl~~aAala~L~~l~~~~~~~~~~~~g~~l~ 381 (474)
T PLN02482 303 FGITPDLTTLGKVIGGG-LPVGAYGGRREIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLQQPGTYEYLDKITKKLI 381 (474)
T ss_pred hCCCCCEEEecchhhCC-CceEEEEEcHHHHHhhccCCCcccccCcchhHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 89999999999999999 899999999999998863 34778999999999999999999988889999999999999
Q ss_pred HHHHhhcCCC--CCCeEeeeceeEEEEecCCc------------hhHHHHHHHHHHCCceeccCCCCEEEEeccCcCCHH
Q psy6548 156 SELRSRLSPD--IVPVVRGKGLLNAIVLDKSI------------LEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQ 221 (242)
Q Consensus 156 ~~l~~~l~~~--~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~l~~~gi~~~~~~~~~lR~~~~~~~t~e 221 (242)
++| +++... ........+.++.+.+..+. .....+.+.|+++||++.+.+... + .|++.+|++
T Consensus 382 ~~L-~~l~~~~g~~~~~~~v~g~~gi~f~~~~~~~~~~~~~~d~~~~~~~~~~l~~~Gv~~~~~~~~~-~-~psl~ht~~ 458 (474)
T PLN02482 382 QGI-LEAGKKAGHEMCGGYISGMFGFFFTEGPVYNFADAKKSDTAKFARFHRGMLEEGVYLAPSQFEA-G-FTSLAHTEE 458 (474)
T ss_pred HHH-HHHHHhcCCCEEEcccceEEEEEEecCCccChhhhccCCHHHHHHHHHHHHHCCeEEeccCCCC-C-cCCCCCCHH
Confidence 999 665321 22111222235555553310 124578899999999998753322 2 378999999
Q ss_pred HHHHHHHHHHHHHHHH
Q psy6548 222 ELREGLDIIINTINTM 237 (242)
Q Consensus 222 ~i~~~~~~l~~~l~~~ 237 (242)
||+++++++++++.++
T Consensus 459 dId~~l~al~~~l~~~ 474 (474)
T PLN02482 459 DIDFTIAAAERVLARI 474 (474)
T ss_pred HHHHHHHHHHHHHHhC
Confidence 9999999999998753
No 67
>PRK07046 aminotransferase; Validated
Probab=100.00 E-value=1.2e-33 Score=243.15 Aligned_cols=229 Identities=18% Similarity=0.289 Sum_probs=191.7
Q ss_pred cccccCCCChhh--hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCC
Q psy6548 3 LQFPVKSKQVPA--KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYED 80 (242)
Q Consensus 3 ~~~~~~~~d~~~--~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~ 80 (242)
+++.+||||++. +.+..+++++|++||+++++|.++|+++|+++++++|++||+++|+||+++ | +.|.+....+++
T Consensus 198 ~~~~~~~nd~~~l~~~l~~~~vAavi~EPi~g~~G~~~p~~~fl~~lr~lc~~~g~llI~DEV~t-f-r~g~Gg~~~~~g 275 (453)
T PRK07046 198 TTRVVEFNDLAALEAALADGDVAAVLAEPAMTNIGMVLPEPGFHEALRELTRRYGTLLVIDETHT-I-SSGPGGYTRAHG 275 (453)
T ss_pred ceEeeCCCCHHHHHHHhCCCCeEEEEECCCCCCCCCcCCCHHHHHHHHHHHHHhCCEEEEEcccc-C-ccCCcchhHHhC
Confidence 467899999999 555568899999999999999999999999999999999999999999998 4 344444556779
Q ss_pred CCCCEEEeeccccCCccchheeEeChhhhhccCC---------CCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHH
Q psy6548 81 VRPDIVILGKALSGGLYPISAVLADDEVMGTLVP---------GTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMG 151 (242)
Q Consensus 81 ~~~~~~~~sK~~~~g~~~~g~~~~~~~~~~~l~~---------~~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~ 151 (242)
+.||+++++|+++|| +|+|.+++++++++.+.+ ..+++||++||+++++++++++.++++++.++++++.
T Consensus 276 v~PDi~t~gK~lggG-~Pi~av~g~~~i~~~~~~~~~~~~~~~~~~~~T~~gnpl~~aa~~a~L~~l~~~~~~~~~~~~g 354 (453)
T PRK07046 276 LEPDFLVVGKPIAGG-VPCAVYGFSAELAERAQAAKASAPPGHSGIGTTLSANALAMAAMRATLAEVMTEAAYAHMLALA 354 (453)
T ss_pred CCccceeehhhhcCC-CcceeeeehHHHHHHHhhccccCCCCCceeCCCCcccHHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 999999999999999 899999999999988752 1366799999999999999999998888999999999
Q ss_pred HHHHHHHHhhcC--CCCCCeEeeeceeEEEEecCCc-------------hhHHHHHHHHHHCCceeccCCCCEEEEeccC
Q psy6548 152 EIFRSELRSRLS--PDIVPVVRGKGLLNAIVLDKSI-------------LEVYDVCIKMKDAGLVTKPISNNIIRLSPAL 216 (242)
Q Consensus 152 ~~l~~~l~~~l~--~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~l~~~gi~~~~~~~~~lR~~~~~ 216 (242)
++++++| +++. ......+.+.|.++.+.+..+. .....+...|+++||++.+. .+.++++|+
T Consensus 355 ~~l~~~L-~~l~~~~~~~~~v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gv~~~~~-~~~~~~~p~- 431 (453)
T PRK07046 355 ARLAAGL-RAVIARHGLPWHVTRVGARVEFQFAPTPPRNGAEAAAALDPELEAALHLYLLNRGVLITPF-HNMMLVCPA- 431 (453)
T ss_pred HHHHHHH-HHHHHhCCCCeEEEEeCcEEEEEEeCCCCCCHHHHhcccCHHHHHHHHHHHHHCCCEEecc-cCcEEEeCC-
Confidence 9999999 5542 2455667788888888763210 12346788889999999885 456788864
Q ss_pred cCCHHHHHHHHHHHHHHHHHHh
Q psy6548 217 NITEQELREGLDIIINTINTMA 238 (242)
Q Consensus 217 ~~t~e~i~~~~~~l~~~l~~~~ 238 (242)
+|++|+++++++++++++++.
T Consensus 432 -~t~~did~~~~~~~~~l~~~~ 452 (453)
T PRK07046 432 -TTAADVDRLVAAFDACLGELL 452 (453)
T ss_pred -CCHHHHHHHHHHHHHHHHHHh
Confidence 899999999999999998764
No 68
>TIGR00508 bioA adenosylmethionine-8-amino-7-oxononanoate transaminase. All members of the seed alignment have been demonstrated experimentally to act as EC 2.6.1.62, an enzyme in the biotin biosynthetic pathway. Alternate names include 7,8-diaminopelargonic acid aminotransferase, DAPA aminotransferase, and adenosylmethionine-8-amino-7-oxononanoate aminotransferase. The gene symbol is bioA in E. coli and BIO3 in S. cerevisiae.
Probab=100.00 E-value=1.4e-33 Score=241.80 Aligned_cols=215 Identities=37% Similarity=0.623 Sum_probs=190.0
Q ss_pred CCCEEEEEEccc-ccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEEeeccccCCcc
Q psy6548 19 NPNICAFMVEPI-QGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLY 97 (242)
Q Consensus 19 ~~~~~~i~~e~~-~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~sK~~~~g~~ 97 (242)
.+++++|++||+ ++.+|.++++.+++++|+++|++||+++|+||+|+|+|++|..+..+++++.||++++||+++||++
T Consensus 205 ~~~vaavivEPv~~g~gG~~~~~~~~l~~l~~lc~~~~~llI~DEv~tG~Gr~G~~~~~~~~~v~pDi~~~gK~l~gG~~ 284 (427)
T TIGR00508 205 SDEIAAVILEPIVQGAGGMRFYHPTYLKRVQALCKQYDILLIADEIATGFGRTGKLFACEHAGVVPDILCVGKALTGGYM 284 (427)
T ss_pred CCcEEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCCccchhhhcCCCCCEEEechhhhcCcc
Confidence 468999999997 8888999999999999999999999999999999999999988888889999999999999999966
Q ss_pred chheeEeChhhhhccCCC-----CCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhhcCC-CCCCeEe
Q psy6548 98 PISAVLADDEVMGTLVPG-----THGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELRSRLSP-DIVPVVR 171 (242)
Q Consensus 98 ~~g~~~~~~~~~~~l~~~-----~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l~~~l~~-~~~~~~~ 171 (242)
+++.+++++++++.+... .++.||++||+++++++++++.++++++.++++++.+++++.| +++.. .....+.
T Consensus 285 p~~a~~~~~~~~~~~~~~~~~~~~~~~T~~g~p~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L-~~l~~~~~i~~vr 363 (427)
T TIGR00508 285 TLSATVTTDKVAQTISSGEAGCFMHGPTFMGNPLACAVAEASLAILLEGEWQKQVSAIENQLKREL-SPLRKNPVVKDVR 363 (427)
T ss_pred cceEEEEcHHHHHHHhcCCCCccccCCCCCcCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH-HHhhcCCCEEeEe
Confidence 999999999998887642 3677889999999999999999988888999999999999999 66653 2233566
Q ss_pred eeceeEEEEecCCchhHHHHHHHHHHCCceeccCCCCEEEEeccCcCCHHHHHHHHHHHHHHHHH
Q psy6548 172 GKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINT 236 (242)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~ 236 (242)
+.|.++.+.+..+ .....+.++|+++||++.+.+ +.+|++|++.+|++||+++++++++++.+
T Consensus 364 g~G~~~~i~~~~~-~~~~~~~~~l~~~Gv~~~~~~-~~l~~~ppl~~t~~~id~~~~~l~~~l~~ 426 (427)
T TIGR00508 364 VLGAIGVVEMYKP-VNVEELQKKFVEQGVWIRPFG-KLIYVMPPYIITTEQLQKLTAALIEALHE 426 (427)
T ss_pred ccccEEEEEECCc-cCHHHHHHHHHHCCeEEEecC-CEEEEECCCCCCHHHHHHHHHHHHHHHhc
Confidence 7799999999765 567889999999999998764 68999999999999999999999998864
No 69
>cd00610 OAT_like Acetyl ornithine aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, alanine-glyoxylate aminotransferase, dialkylglycine decarboxylase, 4-aminobutyrate aminotransferase, beta-alanine-pyruvate aminotransferase, adenosylmethionine-8-amino-7-oxononanoate aminotransferase, and glutamate-1-semialdehyde 2,1-aminomutase. All the enzymes belonging to this family act on basic amino acids and their derivatives are involved in transamination or decarboxylation.
Probab=100.00 E-value=1.7e-33 Score=241.47 Aligned_cols=230 Identities=45% Similarity=0.740 Sum_probs=196.2
Q ss_pred cccccCCC-----------Chhh--hcCCC--CCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEecccccc
Q psy6548 3 LQFPVKSK-----------QVPA--KLKSN--PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGL 67 (242)
Q Consensus 3 ~~~~~~~~-----------d~~~--~~~~~--~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~ 67 (242)
++..+||| |++. +.+.. ++++++++||+++++|.++++++++++|+++|++||+++|+||+|+++
T Consensus 158 ~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~Dev~~g~ 237 (413)
T cd00610 158 GVLHVPYPYRYRPPAELADDLEALEEALEEHPEEVAAVIVEPIQGEGGVIVPPPGYLKALRELCRKHGILLIADEVQTGF 237 (413)
T ss_pred CcEEeCCCccccchhhHHHHHHHHHHHHhcCCCCEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCC
Confidence 46788998 7777 44444 589999999999999999999999999999999999999999999999
Q ss_pred CccCcccccccCCCCCCEEEeeccccCCccchheeEeChhhhhcc--CCCCCCCCCCCCHHHHHHHHHHHHHHHhccHHH
Q psy6548 68 GRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTL--VPGTHGSTYGGNPLACKLAMTALDVILEENMIE 145 (242)
Q Consensus 68 ~~~g~~~~~~~~~~~~~~~~~sK~~~~g~~~~g~~~~~~~~~~~l--~~~~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~ 145 (242)
++.|..+..+.+++.||++++||++++| +|+|++++++++++.+ ....+.++++.++++++++.++++.++.+++.+
T Consensus 238 g~~g~~~~~~~~~~~~d~~t~sK~l~~g-~~~g~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~~a~l~~l~~~~~~~ 316 (413)
T cd00610 238 GRTGKMFAFEHFGVEPDIVTLGKGLGGG-LPLGAVLGREEIMDAFPAGPGLHGGTFGGNPLACAAALAVLEVLEEEGLLE 316 (413)
T ss_pred CcCcchhhHhhcCCCCCeEEEcccccCc-cccEEEEEcHHHHHhhccCCCCCCCCCCcCHHHHHHHHHHHHHHHhccHHH
Confidence 8888766667778899999999999999 9999999999999986 445567788999999999999999888778899
Q ss_pred HHHHHHHHHHHHHHhhcCC--CCCCeEeeeceeEEEEecCCc-------hhHHHHHHHHHHCCceeccCCCCEEEEeccC
Q psy6548 146 NAYKMGEIFRSELRSRLSP--DIVPVVRGKGLLNAIVLDKSI-------LEVYDVCIKMKDAGLVTKPISNNIIRLSPAL 216 (242)
Q Consensus 146 ~~~~~~~~l~~~l~~~l~~--~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~l~~~gi~~~~~~~~~lR~~~~~ 216 (242)
+++++++++++.| +.+.. .......+.|.++++.++.+. .....+.+.|.++||.+.+.+.+.+|+++++
T Consensus 317 ~~~~~~~~l~~~l-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~v~~~~~~~lR~~~~~ 395 (413)
T cd00610 317 NAAELGEYLRERL-RELAEKHPLVGDVRGRGLMIGIELVKDRATKPPDKELAAKIIKAALERGLLLRPSGGNVIRLLPPL 395 (413)
T ss_pred HHHHHHHHHHHHH-HHHHhhCCcEEEeecCceEEEEEEecCCCcCCcchHHHHHHHHHHHHCCeEEeecCCCEEEEECCC
Confidence 9999999999999 65542 233334567889998886531 3567899999999999999877899999999
Q ss_pred cCCHHHHHHHHHHHHHHH
Q psy6548 217 NITEQELREGLDIIINTI 234 (242)
Q Consensus 217 ~~t~e~i~~~~~~l~~~l 234 (242)
.+|++++++++++|++++
T Consensus 396 ~~t~~~i~~~~~~l~~~l 413 (413)
T cd00610 396 IITEEEIDEGLDALDEAL 413 (413)
T ss_pred cCCHHHHHHHHHHHHHhC
Confidence 999999999999998753
No 70
>PRK12389 glutamate-1-semialdehyde aminotransferase; Provisional
Probab=100.00 E-value=1.2e-33 Score=242.41 Aligned_cols=228 Identities=25% Similarity=0.358 Sum_probs=190.3
Q ss_pred cccccCCCChhh--hcCC--CCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCccccccc
Q psy6548 3 LQFPVKSKQVPA--KLKS--NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHY 78 (242)
Q Consensus 3 ~~~~~~~~d~~~--~~~~--~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~ 78 (242)
.++.+||||++. +.+. .+++++|++||+++++|.++|+++|+++|+++|++||+++|+||+++|| +++..++.++
T Consensus 178 ~~~~~~~~d~~~l~~~l~~~~~~vaavi~EPv~g~~G~~~p~~~yl~~l~~lc~~~g~llI~DEV~tG~-Rt~~~~a~~~ 256 (428)
T PRK12389 178 EVITVPFNDIEALKEALDKWGDEVAAVLVEPIVGNFGIVEPKPGFLEAVNELAHEAGALVIYDEVITAF-RFMYGGAQDL 256 (428)
T ss_pred ceEEcCCCCHHHHHHHHHhcCCcEEEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEEcccccc-ccCcchhhHH
Confidence 467889999988 4443 3689999999999999999999999999999999999999999999999 8877667778
Q ss_pred CCCCCCEEEeeccccCCccchheeEeChhhhhccCC---CCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Q psy6548 79 EDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVP---GTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFR 155 (242)
Q Consensus 79 ~~~~~~~~~~sK~~~~g~~~~g~~~~~~~~~~~l~~---~~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~ 155 (242)
+++.||+++++|++++| +|+|.+++++++++.+.+ ..+++||++||+++++++++++.++++++.++++++.++++
T Consensus 257 ~gv~PDivt~gK~lggG-~Pi~av~~~~~i~~~~~~~~~~~~~~T~~gnpl~~Aaala~L~~l~~~~l~~~~~~~g~~l~ 335 (428)
T PRK12389 257 LGVEPDLTALGKIIGGG-LPIGAYGGRKDIMEQVAPLGPAYQAGTMAGNPASMAAGIACLEVLQQEGVYEKLDRLGAMLE 335 (428)
T ss_pred hCCCCCeeeechhhcCC-CceeEEeEHHHHHhhhccCCCcccccCCccCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 89999999999999999 899999999999998853 35778999999999999999999988889999999999999
Q ss_pred HHHHhhcCC--CCCCeE-eeeceeEEEEecCCc------------hhHHHHHHHHHHCCceeccCCCCEEEEeccCcCCH
Q psy6548 156 SELRSRLSP--DIVPVV-RGKGLLNAIVLDKSI------------LEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITE 220 (242)
Q Consensus 156 ~~l~~~l~~--~~~~~~-~~~~~~~~~~~~~~~------------~~~~~~~~~l~~~gi~~~~~~~~~lR~~~~~~~t~ 220 (242)
+.| +++.. ...... .+.| ++.+++..+. .....+.+.|+++|+++.+.+.+.+ .|++.+|+
T Consensus 336 ~~L-~~l~~~~~~~~~v~r~~g-~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~--~~~l~~t~ 411 (428)
T PRK12389 336 EGI-LEAAEKHGITITINRLKG-ALTVYFTDEKVTNYDQAERSDGEAFGKFFKLMLNQGINLAPSKYEAW--FLTTAHTE 411 (428)
T ss_pred HHH-HHHHHhCCCCEEEEecCc-EEEEEEeCCCCCChhhhcccCHHHHHHHHHHHHHCCcEeecCCCCCe--eecCCCCH
Confidence 999 55531 233334 4445 6666664321 1256789999999999988644433 46799999
Q ss_pred HHHHHHHHHHHHHHHH
Q psy6548 221 QELREGLDIIINTINT 236 (242)
Q Consensus 221 e~i~~~~~~l~~~l~~ 236 (242)
+|++++++++++++++
T Consensus 412 e~id~~~~~l~~~l~~ 427 (428)
T PRK12389 412 EDIEETLEAVDRAFAQ 427 (428)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999999999865
No 71
>KOG1404|consensus
Probab=100.00 E-value=3e-34 Score=230.92 Aligned_cols=210 Identities=36% Similarity=0.584 Sum_probs=191.3
Q ss_pred CCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEEeeccccCCccc
Q psy6548 19 NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYP 98 (242)
Q Consensus 19 ~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~sK~~~~g~~~ 98 (242)
...+++++.|++++.+|.+.+++.||++..++|+++|.++|.||+++||||+|..|.++..++.||+++++|++|+| +|
T Consensus 210 ~~~vAafiaEtIqGvgG~v~~p~GYlka~~~~v~k~Ggl~IaDEVqtGfGRtG~~wgfe~h~v~PDIvTmAKgiGnG-~P 288 (442)
T KOG1404|consen 210 PETVAAFIAETIQGVGGIVELPPGYLKAAYKVVRKRGGLFIADEVQTGFGRTGHMWGFESHGVVPDIVTMAKGIGNG-FP 288 (442)
T ss_pred CCceeEEEeehhccCCccccCCchHHHHHHHHHHHcCCEEEehhhhhccccccccccccccCCCccHHHHHhhccCC-Cc
Confidence 45699999999999999999999999999999999999999999999999999989999999999999999999999 99
Q ss_pred hheeEeChhhhhccCCCC-CCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhhcCC--CCCCeEeeece
Q psy6548 99 ISAVLADDEVMGTLVPGT-HGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELRSRLSP--DIVPVVRGKGL 175 (242)
Q Consensus 99 ~g~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l~~~l~~--~~~~~~~~~~~ 175 (242)
+|.++.+++++..+.+.. +..|+++||++++++.++|+.+++++++++..+.+.++++.| .++.+ .++..+++.|+
T Consensus 289 l~AVvtt~EIa~v~~~~~~~fnTyggnP~a~avg~aVL~Vikee~LqE~aa~vG~yl~~~l-~~l~d~h~iIGdVRG~GL 367 (442)
T KOG1404|consen 289 LGAVVTTPEIADVLNQKSSHFNTYGGNPVACAVGLAVLKVIKEENLQENAAEVGSYLLEKL-AALKDKHPIIGDVRGRGL 367 (442)
T ss_pred ceeeecCHHHHHHHHhccccccccCCCchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH-HHHhhcCCceeeccccee
Confidence 999999999999988766 888999999999999999999999999999999999999999 77765 56778899999
Q ss_pred eEEEEecCCc--------hhHHHHHHHHHHCCceeccC--CCCEEEEeccCcCCHHHHHHHHHHH
Q psy6548 176 LNAIVLDKSI--------LEVYDVCIKMKDAGLVTKPI--SNNIIRLSPALNITEQELREGLDII 230 (242)
Q Consensus 176 ~~~~~~~~~~--------~~~~~~~~~l~~~gi~~~~~--~~~~lR~~~~~~~t~e~i~~~~~~l 230 (242)
++++++.++. .....+.+.+.++|+.+..+ .++.+|++|+++.|+||++.+++..
T Consensus 368 m~GvE~V~dk~~~~pp~~~~~~~i~~~cke~Gvlvg~g~i~G~vfriaPPlciT~edi~f~~~~~ 432 (442)
T KOG1404|consen 368 MLGVELVSDKSEPKPPATAEGAVIGEQCKELGVLVGKGGIHGNVFRIAPPLCITKEDIDFAVEYF 432 (442)
T ss_pred EEEEEEecccCCCCCcchHHHHHHHHHHHHhCeeeecccccceEEEecCCeeccHHHHHHHHHHH
Confidence 9999987763 33556889999999999655 4669999999999999997777755
No 72
>PRK06149 hypothetical protein; Provisional
Probab=100.00 E-value=1.4e-33 Score=262.17 Aligned_cols=216 Identities=30% Similarity=0.569 Sum_probs=192.7
Q ss_pred CCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCc-ccccccCCCCCCEEEeeccccCCcc
Q psy6548 19 NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGK-LLAIHYEDVRPDIVILGKALSGGLY 97 (242)
Q Consensus 19 ~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~-~~~~~~~~~~~~~~~~sK~~~~g~~ 97 (242)
.+++++|++||+++++|.++|+++|+++++++|++||+++|+||+++|||++|. .++++++|+.||++++||++++| +
T Consensus 742 ~~~iAavI~Epv~g~gG~i~~p~~yL~~l~~lc~~~g~llI~DEV~tGfGRtG~~~~a~e~~gv~PDivt~gK~lg~G-~ 820 (972)
T PRK06149 742 GRGLAGFICEPVYGNAGGIALPPGYLQQVYAAVRARGGVCIADEVQVGYGRLGHYFWGFEQQGVVPDIITMAKGMGNG-H 820 (972)
T ss_pred CCceEEEEEcccccCCCcccCCHHHHHHHHHHHHHcCCEEEEEeehhcCCccCccchhhhhcCCCCCEEEecccccCC-e
Confidence 468999999999999999999999999999999999999999999999999997 55788899999999999999999 8
Q ss_pred chheeEeChhhhhccCC-CCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhhcC--CCCCCeEeeec
Q psy6548 98 PISAVLADDEVMGTLVP-GTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELRSRLS--PDIVPVVRGKG 174 (242)
Q Consensus 98 ~~g~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l~~~l~--~~~~~~~~~~~ 174 (242)
++|++++++++++.+.+ ..+.+|+++||+++++++++++.++++++.++.+++.+++++.| +++. ..+...+.+.|
T Consensus 821 Pl~av~~~~~i~~~~~~~~~~~sT~~gnP~~~aaala~L~~i~~e~l~~~~~~~G~~l~~~L-~~l~~~~~~i~~vrG~G 899 (972)
T PRK06149 821 PLGAVITRREIAEALEAEGYFFSSTGGSPVSCRIGMAVLDVLREEKLQENARRVGDHLKARL-EALADRHPLIGAVHGMG 899 (972)
T ss_pred eeEEEEEcHHHHhhhccCCcccCCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH-HHHHHhCCCeEEEeecc
Confidence 99999999999988864 34556789999999999999999998899999999999999999 6663 24567788999
Q ss_pred eeEEEEecCCc-------hhHHHHHHHHHHCCceeccCCC--CEEEEeccCcCCHHHHHHHHHHHHHHHHH
Q psy6548 175 LLNAIVLDKSI-------LEVYDVCIKMKDAGLVTKPISN--NIIRLSPALNITEQELREGLDIIINTINT 236 (242)
Q Consensus 175 ~~~~~~~~~~~-------~~~~~~~~~l~~~gi~~~~~~~--~~lR~~~~~~~t~e~i~~~~~~l~~~l~~ 236 (242)
.++.+++..+. .....+.+.|+++||++.+.+. +.+||.|++.+|++++++++++|++++.+
T Consensus 900 l~~gvel~~~~~~~~~~~~~~~~i~~~l~~~Gvl~~~~g~~~~vl~~~Ppl~it~~~id~~~~~l~~~l~~ 970 (972)
T PRK06149 900 LYLGVELVRDRQTLEPATEETAAICDRLLELGVIMQPTGDHLNILKIKPPLCLDRESADFFVDMLDRVLTE 970 (972)
T ss_pred eEEEEEEecCcccCCCChHHHHHHHHHHHhCCeEEeecCCCCCEEEEECCCcCCHHHHHHHHHHHHHHHHh
Confidence 99999985321 2356789999999999988754 78999999999999999999999999875
No 73
>PRK08297 L-lysine aminotransferase; Provisional
Probab=100.00 E-value=1.1e-33 Score=243.07 Aligned_cols=212 Identities=33% Similarity=0.523 Sum_probs=181.3
Q ss_pred CCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEEeeccccCCccc
Q psy6548 19 NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYP 98 (242)
Q Consensus 19 ~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~sK~~~~g~~~ 98 (242)
.+++++|++||+++++|.++|+++|+++|+++|++||+++|+||+++|||++|..++++++++.||+++++|+++.
T Consensus 223 ~~~iAavI~EPi~g~~G~~~pp~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~a~~~~gv~PDiv~~gK~l~~---- 298 (443)
T PRK08297 223 PHDIACFIAEPIQGEGGDNHFRPEFFAAMRELCDEHDALLIFDEVQTGVGLTGTAWAYQQLGVRPDIVAFGKKTQV---- 298 (443)
T ss_pred CCcEEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhccCccchHHHHHhcCCCCCEEEecccccc----
Confidence 4789999999999999999999999999999999999999999999999999998888899999999999999861
Q ss_pred hheeEeChhhhhc----cC-CCCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhhcCC--CCCC-eE
Q psy6548 99 ISAVLADDEVMGT----LV-PGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELRSRLSP--DIVP-VV 170 (242)
Q Consensus 99 ~g~~~~~~~~~~~----l~-~~~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l~~~l~~--~~~~-~~ 170 (242)
|.++..+++.+. +. ...+++|+++||++++++.++++.++++++.++++++.+++++.| +++.. .... .+
T Consensus 299 -~a~l~~~~i~~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~L~~l~~~~l~~~~~~~g~~l~~~L-~~l~~~~~~~~~~v 376 (443)
T PRK08297 299 -CGIMAGRRVDEVEDNVFAVSSRINSTWGGNLVDMVRARRILEVIEEDGLVENAARQGEYLLARL-EELAAEFPAVVSNV 376 (443)
T ss_pred -cceecchHHHHhhhhhccCccccCCCCCccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH-HHHHHHCCCcceee
Confidence 223334333221 11 234788999999999999999999988889999999999999999 65532 2223 67
Q ss_pred eeeceeEEEEecCCchhHHHHHHHHHHCCceeccCCCCEEEEeccCcCCHHHHHHHHHHHHHHHHHH
Q psy6548 171 RGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINTM 237 (242)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~ 237 (242)
.+.|.++.+++... .....+.+.|+++|+++.+.+.+.+||+|++.+|++|+++++++|++++.++
T Consensus 377 rg~G~~~~i~~~~~-~~~~~~~~~l~~~Gvl~~~~~~~~lr~~P~l~~t~~eid~~l~~l~~~l~~~ 442 (443)
T PRK08297 377 RGRGLMCAFDLPTT-ADRDEVIRRLWEEGVLVLPCGERSIRFRPALTVTTEEIDAAIDALRRALPEV 442 (443)
T ss_pred eccceEEEEEecCH-HHHHHHHHHHHHCCEEEecCCCCeEEEECCccCCHHHHHHHHHHHHHHHHhh
Confidence 78899999999764 4567899999999999998877899999999999999999999999998865
No 74
>PRK00615 glutamate-1-semialdehyde aminotransferase; Provisional
Probab=100.00 E-value=3.9e-33 Score=238.54 Aligned_cols=229 Identities=21% Similarity=0.348 Sum_probs=189.5
Q ss_pred cccCCCChhh--hcCC--CCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCC
Q psy6548 5 FPVKSKQVPA--KLKS--NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYED 80 (242)
Q Consensus 5 ~~~~~~d~~~--~~~~--~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~ 80 (242)
..+||||+++ +.+. .+++++|++||+++++|.++|+++|+++|+++|++||+++|+||+|+|| ++|..++.++++
T Consensus 181 ~~~~~~d~~~l~~~l~~~~~~~aavI~Epv~~~~G~~~p~~~yl~~l~~lc~~~g~llI~DEv~tG~-R~G~~ga~~~~g 259 (433)
T PRK00615 181 LSLPYNDFQIFQTVMNSLGHRVAGVIFEPICANMGVVLPKPGFIEGIIQTCRRTGSLSIMDEVVTGF-RVAQGGAAAIYH 259 (433)
T ss_pred EeCCCCCHHHHHHHHHhcCCceEEEEECCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEEcccccc-cccHhHHHHhcC
Confidence 5578999988 4443 3689999999999999999999999999999999999999999999999 788777778899
Q ss_pred CCCCEEEeeccccCCccchheeEeChhhhhccCCC---CCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Q psy6548 81 VRPDIVILGKALSGGLYPISAVLADDEVMGTLVPG---THGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSE 157 (242)
Q Consensus 81 ~~~~~~~~sK~~~~g~~~~g~~~~~~~~~~~l~~~---~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~ 157 (242)
+.||++++||++++| +++|++++++++++.+.+. .+.+|++++|+++++++++++.++++++.++++++.+++++.
T Consensus 260 v~PDi~~~gK~lggG-~p~~av~~~~~i~~~~~~~~~~~~~~T~~g~p~~~aa~la~L~~i~~~~~~~~~~~~g~~l~~~ 338 (433)
T PRK00615 260 VKPDITVYGKILGGG-LPAAAVVAHKSIMDHLAPEGTIFQAGTLSGNPLAMAAGKASINLCREQGFYTQLSTLEQNFLSP 338 (433)
T ss_pred CCCCeEEEcccccCC-cceeeeeecHHHHhhhcCCCCcccCCCCcccHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 999999999999999 8999999999999988642 366789999999999999999998888899999999999988
Q ss_pred HHhhcCC-CCCCeEeeeceeEEEEecCCc------------hhHHHHHHHHHHCCceeccCCCCEEEEeccCcCCHHHHH
Q psy6548 158 LRSRLSP-DIVPVVRGKGLLNAIVLDKSI------------LEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELR 224 (242)
Q Consensus 158 l~~~l~~-~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~l~~~gi~~~~~~~~~lR~~~~~~~t~e~i~ 224 (242)
|++.+.. +........|.++.+++..+. .....+..+|.++||++.+...+. ..++..+|++||+
T Consensus 339 l~~~~~~~g~~v~~~r~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~--~~ls~~ht~~did 416 (433)
T PRK00615 339 IEEMIRSQGFPVSLVRYGSMFSFFFNENRPNNLAEAQLSDIEAFQTFYQSAFSKGVYLSPSPFEA--SFLSSAHSMENLD 416 (433)
T ss_pred HHHHHHHcCCCeEEEeeceEEEEEEeCCCCCChHHHhhCCHHHHHHHHHHHHHCCeeecCccccc--cceecCCCHHHHH
Confidence 8432222 222233337889998886531 124579999999999998763322 1334679999999
Q ss_pred HHHHHHHHHHHHH
Q psy6548 225 EGLDIIINTINTM 237 (242)
Q Consensus 225 ~~~~~l~~~l~~~ 237 (242)
++++.++++++++
T Consensus 417 ~~~~a~~~~~~~~ 429 (433)
T PRK00615 417 YAQNVLIDSLEKV 429 (433)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999875
No 75
>TIGR00713 hemL glutamate-1-semialdehyde-2,1-aminomutase. This enzyme, glutamate-1-semialdehyde-2,1-aminomutase (glutamate-1-semialdehyde aminotransferase, GSA aminotransferase), contains a pyridoxal phosphate attached at a Lys residue at position 283 of the seed alignment. It is in the family of class III aminotransferases.
Probab=100.00 E-value=3.8e-33 Score=239.92 Aligned_cols=230 Identities=27% Similarity=0.399 Sum_probs=188.4
Q ss_pred ccccCCCChhh--hcCC--CCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccC
Q psy6548 4 QFPVKSKQVPA--KLKS--NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYE 79 (242)
Q Consensus 4 ~~~~~~~d~~~--~~~~--~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~ 79 (242)
++.+||||+++ +.+. .+++++|++||+++++|.++++++++++|+++|++||+++|+||+|+|| ++|..+..+++
T Consensus 174 ~~~~~~~d~~~l~~~i~~~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~-r~g~~~~~~~~ 252 (423)
T TIGR00713 174 TLVLPYNDLEALEEVFEEYGEEIAGVIVEPVAGNMGVVPPKPEFLAGLRALTEEYGSLLIFDEVMTGF-RVALGGAQEYF 252 (423)
T ss_pred eEEeCCCCHHHHHHHHHHcCCcEEEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHhCCEEEEEcccccc-ccCcchhHHHh
Confidence 46788999988 3343 2689999999999999988888999999999999999999999999998 67665566677
Q ss_pred CCCCCEEEeeccccCCccchheeEeChhhhhccCC---CCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Q psy6548 80 DVRPDIVILGKALSGGLYPISAVLADDEVMGTLVP---GTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRS 156 (242)
Q Consensus 80 ~~~~~~~~~sK~~~~g~~~~g~~~~~~~~~~~l~~---~~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~ 156 (242)
++.||+++|||++++| +|+||+++++++++.+.+ ..+.+|+++++++++++.++++.++++++.++++++.+++++
T Consensus 253 ~~~pDi~t~sK~l~~G-~pig~v~~~~~i~~~~~~~~~~~~~~T~~~~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~~~~ 331 (423)
T TIGR00713 253 GVEPDLTTLGKIIGGG-LPVGAFGGRREIMERLAPEGPVYQAGTLSGNPLAMAAGLATLKLLDEEGVYTELDELAKRLAE 331 (423)
T ss_pred CCCcchhhhhhhhcCC-CceeeeeEHHHHHHhhCcCCCeeeccCCCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 8899999999999999 999999999999998874 236678999999999999999998877788889999999988
Q ss_pred HHHhhcCC-CCCCeEeeeceeEEEEecCCc------------hhHHHHHHHHHHCCceeccCCCCEEEEeccCcCCHHHH
Q psy6548 157 ELRSRLSP-DIVPVVRGKGLLNAIVLDKSI------------LEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQEL 223 (242)
Q Consensus 157 ~l~~~l~~-~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~l~~~gi~~~~~~~~~lR~~~~~~~t~e~i 223 (242)
.|++.+.. .....+.+.|.++.+.+..+. .....+.+.|+++||++.+.+.+.+|++++ +|++++
T Consensus 332 ~l~~~~~~~~~~~~v~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~l~~~--~t~~~i 409 (423)
T TIGR00713 332 GLSEVLEDTGIPHTVNRVGSMFSLFFTEEEVTNYADAKKSDTELFAKFFHEMLDKGVFLPPSQFEACFLSAA--HTEEDI 409 (423)
T ss_pred HHHHHHHhcCCCeEEEeeccEEEEEEecCCCCChhhhhcccHHHHHHHHHHHHHCCeEEecCCccceeeECC--CCHHHH
Confidence 88433332 344445667888887665320 123468889999999998765567899865 799999
Q ss_pred HHHHHHHHHHHHHH
Q psy6548 224 REGLDIIINTINTM 237 (242)
Q Consensus 224 ~~~~~~l~~~l~~~ 237 (242)
++++++|+++++++
T Consensus 410 ~~~~~~l~~~l~~~ 423 (423)
T TIGR00713 410 ENTIEAAEEVFAEL 423 (423)
T ss_pred HHHHHHHHHHHhhC
Confidence 99999999988753
No 76
>KOG1401|consensus
Probab=100.00 E-value=3.7e-33 Score=226.08 Aligned_cols=233 Identities=32% Similarity=0.526 Sum_probs=195.7
Q ss_pred ccccccCCCChhh--hcCC--CCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccc
Q psy6548 2 SLQFPVKSKQVPA--KLKS--NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIH 77 (242)
Q Consensus 2 ~~~~~~~~~d~~~--~~~~--~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~ 77 (242)
..+..+++||+.+ +.++ +++++++|+||+++.+|.++++++|+..|+++|+++|+++|.||+++||||.|..|+.+
T Consensus 183 p~v~~~~ynd~t~l~k~~~~h~~~IaAVIvEPiqGaGG~~p~~peFl~~L~k~C~~~~vl~I~DEV~tG~gR~g~~~a~e 262 (433)
T KOG1401|consen 183 PDVVTAEYNDSTALEKLFESHKGEIAAVIVEPIQGAGGIIPADPEFLIGLRKECDDNGVLLIFDEVQTGLGRLGYGWAQE 262 (433)
T ss_pred CceeecccCCHHHHHHHHHhCCCceEEEEEecccCCCCcccCCHHHHHHHHHHHhhcCceEEeehhhhCccccchHHHHH
Confidence 4678899999999 5555 45699999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCEEEeeccccCCccchheeEeChhhhhccCCCCC---CCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Q psy6548 78 YEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTH---GSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIF 154 (242)
Q Consensus 78 ~~~~~~~~~~~sK~~~~g~~~~g~~~~~~~~~~~l~~~~~---~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l 154 (242)
+++..||+.+++|.++|| +|+|.+.+++++++.+.+..+ ++||++||+++.++..+++.+.++++.+++.+..+.+
T Consensus 263 ~~~~~PDI~t~aK~L~gG-lPigA~~v~~kV~~~i~~~~~l~hg~Tf~gnpLacsa~~~~l~~l~~~e~~k~vs~~~k~L 341 (433)
T KOG1401|consen 263 YFGVTPDITTVAKPLGGG-LPIGATGVRDKVAEMISPGDHLYHGGTFSGNPLACSAGIKVLDELKDPETLKNVSKIGKEL 341 (433)
T ss_pred HhCcCCcceeehhhccCC-ceeEEEeehHHHHhhcCCCCccccCcccCCChhhhhHHHHHHHHHcCHHHHHHHHHHHHHH
Confidence 999999999999999999 999999999999999998755 9999999999999999999999999999999999999
Q ss_pred HHHHHhhcCC-C-CCCeEeeeceeEEEEecCCchhHHHHHHHHHHCCceeccCCCC----EEEEec----cCcCCHHHHH
Q psy6548 155 RSELRSRLSP-D-IVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPISNN----IIRLSP----ALNITEQELR 224 (242)
Q Consensus 155 ~~~l~~~l~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~----~lR~~~----~~~~t~e~i~ 224 (242)
++.+.+.+.. . ......+.+.++.+.+..+ ...+.+...+.|.++.+.+.+ .+|+.| ...+++|.++
T Consensus 342 ~~~l~e~~~~~~~~i~g~~grgl~ig~~~~~p---~~~~~d~~~~~~ll~~~~~~~~~~~gv~i~P~~~l~~~~~~E~i~ 418 (433)
T KOG1401|consen 342 RKLLDEYLKKTPNSICGGVGRGLVIGFEFEGP---VYKFADAAREQGLLILTLGKGLLEEGVRIAPIYLLTVEHTPEVIQ 418 (433)
T ss_pred HHHHHHHhccCCCceeeeeeeEEEEEEEEeec---hhhhhhhhhhhhHHHHHHhcccccceEEEeccccccccCcHHHHH
Confidence 9999555543 1 2222256677777776664 445555566666555544333 377777 2345689999
Q ss_pred HHHHHHHHHHHHHh
Q psy6548 225 EGLDIIINTINTMA 238 (242)
Q Consensus 225 ~~~~~l~~~l~~~~ 238 (242)
++++.+.+.+.++.
T Consensus 419 ~~l~i~~~~l~~~~ 432 (433)
T KOG1401|consen 419 RLLTILEKVLSALN 432 (433)
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999998764
No 77
>PLN02974 adenosylmethionine-8-amino-7-oxononanoate transaminase
Probab=100.00 E-value=1.5e-32 Score=247.89 Aligned_cols=215 Identities=27% Similarity=0.428 Sum_probs=182.5
Q ss_pred CCCEEEEEEccc-ccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEEeeccccCCcc
Q psy6548 19 NPNICAFMVEPI-QGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLY 97 (242)
Q Consensus 19 ~~~~~~i~~e~~-~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~sK~~~~g~~ 97 (242)
.++++++|+||+ ++.+|.++|+++|+++|+++|++||+++|+||+++||||+|..++.+++|+.||+++++|+++|||+
T Consensus 582 ~~~iAAvI~EPviqGaGGmi~~~~~yl~~lr~lc~~~gilLI~DEV~TGfGRtG~~fa~e~~gv~PDIi~~gKgLtgG~~ 661 (817)
T PLN02974 582 NGHIAALIIEPVLHGAGGMLLIDPLFQRALVQVCRSRKIPVIFDEVFTGLWRLGVESAWELLGCKPDIACYAKLLTGGLV 661 (817)
T ss_pred CCCEEEEEEeccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeecccCCCcccchhhHHhcCCCCCEEeecccccCCCC
Confidence 368999999995 8999999999999999999999999999999999999999999999999999999999999999978
Q ss_pred chheeEeChhhhhccCC------CCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHH----HHHHHHHHHHHhhcC-CCC
Q psy6548 98 PISAVLADDEVMGTLVP------GTHGSTYGGNPLACKLAMTALDVILEENMIENAY----KMGEIFRSELRSRLS-PDI 166 (242)
Q Consensus 98 ~~g~~~~~~~~~~~l~~------~~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~----~~~~~l~~~l~~~l~-~~~ 166 (242)
|+|.+++++++++.+.. ..|++||++||+++++++++|+.++++++.+++. ++...+++.|.+.+. ...
T Consensus 662 Plaa~l~~~~I~~~f~~~~~~~~~~hg~Ty~gnpl~cAaala~L~~~~~~~~~~~l~~~~~~l~~~l~~~l~~~l~~~p~ 741 (817)
T PLN02974 662 PLAATLATEEVFEAFRGPSKLDALLHGHSYTAHPMGCAAAAKALQWYKDPSTNPNLIPPGSRLRELWDEELVRAISSLPN 741 (817)
T ss_pred ccEEEEEcHHHHHhhccccccCCcccCCCCCcCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Confidence 99999999999988742 3488999999999999999999998875444444 444444555522332 235
Q ss_pred CCeEeeeceeEEEEecCCc-------hhHHHHHHHHH-HCCceeccCCCCEEEEeccCcCCHHHHHHHHHHHHHHH
Q psy6548 167 VPVVRGKGLLNAIVLDKSI-------LEVYDVCIKMK-DAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTI 234 (242)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~l~-~~gi~~~~~~~~~lR~~~~~~~t~e~i~~~~~~l~~~l 234 (242)
...+.+.|.++.+++..+. ..+..+.+.++ ++|+++++.+ +.+++.|+...++++++++++++.+.+
T Consensus 742 V~~VRg~Gl~~~iel~~~~~~~~~~~~~a~~v~~~~~~~~Gl~~r~~G-nvi~l~pP~~i~~e~l~~~~~~l~~~~ 816 (817)
T PLN02974 742 VERVVSLGTVLALELDAEGSGSGYSSLYARSVVRRLRREDGIYARPLG-NVVYLMCGPTTSPETCTRLLRKVYRRL 816 (817)
T ss_pred eeEEEeeeeEEEEEEecCCcccccchHHHHHHHHHHHHhCCEEEEecC-CEEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence 6778899999999996531 12456888889 9999999874 789999999999999999999998865
No 78
>TIGR00699 GABAtrns_euk 4-aminobutyrate aminotransferase, eukaryotic type. Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase.
Probab=100.00 E-value=1.2e-32 Score=236.21 Aligned_cols=208 Identities=27% Similarity=0.418 Sum_probs=178.4
Q ss_pred CCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCC--CCEEEeecccc-CC
Q psy6548 19 NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVR--PDIVILGKALS-GG 95 (242)
Q Consensus 19 ~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~--~~~~~~sK~~~-~g 95 (242)
.+++++|++||+++++|.++|+++|+++++++|++||+++|+||+++|||++|..|+++++|+. ||++++||+++ +|
T Consensus 249 ~~~iAAvI~EPv~g~~G~~~~~~~yl~~lr~lc~~~g~lLI~DEV~tGfGrtG~~fa~e~~gv~~~PDi~t~gK~lg~gG 328 (464)
T TIGR00699 249 HKPVAAIIVEPIQSEGGDNHASPDFFRKLRDITKKHNVAFIVDEVQTGVGATGKFWAHEHWNLDDPPDMVTFSKKFQTAG 328 (464)
T ss_pred CCcEEEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeeeeeCCCCCcchhHHHhcCCCCCCCEEEehhhhccCC
Confidence 3679999999999999999999999999999999999999999999999999998888999987 99999999996 67
Q ss_pred ccchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhhcC--CC-CCCeEe-
Q psy6548 96 LYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELRSRLS--PD-IVPVVR- 171 (242)
Q Consensus 96 ~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l~~~l~--~~-~~~~~~- 171 (242)
+ +++.+ .+....+..+++|+++||++++++.++++.++++++.++.+++.+++++.| +++. .. .+..+.
T Consensus 329 -~----~~~~~-~~~~~~~~~~~~T~~gnp~~~aaa~a~L~~l~~~~l~~~~~~~g~~l~~~L-~~l~~~~~~~i~~vRg 401 (464)
T TIGR00699 329 -Y----FFHDP-AFRPNKPYRQFNTWMGDPSRALILREIIQEIKRKDLLENVAHVGDYLYTGL-EDLQKKYPEFIQNLRG 401 (464)
T ss_pred -c----cccch-hccCCCCcccccCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH-HHHHHhCCCceeeecc
Confidence 3 22332 222122345888999999999999999999998899999999999999999 6653 22 344556
Q ss_pred -eeceeEEEEecCCchhHHHHHHHHHHCCceeccCCCCEEEEeccCcCCHHHHHHHHHHHHHHH
Q psy6548 172 -GKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTI 234 (242)
Q Consensus 172 -~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~lR~~~~~~~t~e~i~~~~~~l~~~l 234 (242)
+.|+++.++++.. .....+.+.++++|+++.+.+.+.+||.|++.+|++|+++++++|++++
T Consensus 402 ~G~Glm~gie~~~~-~~~~~i~~~~~~~Gvl~~~~g~~~ir~~Ppl~it~~eid~~~~~l~~~~ 464 (464)
T TIGR00699 402 KGRGTFIAWDTPDE-AKRDKLLKKARNNGVNIGGCGVKAIRLRPMLVFQKHHADIFLEIISKII 464 (464)
T ss_pred cCeEEEEEEecCCH-HHHHHHHHHHHHCCcEEecCCCCeEEEeCCCCCCHHHHHHHHHHHHHhC
Confidence 8899999998654 4577899999999999988777899999999999999999999998764
No 79
>TIGR00707 argD acetylornithine and succinylornithine aminotransferases. Members of this family may also act on ornithine, like ornithine aminotransferase (EC 2.6.1.13) (see MEDLINE:90337349) and on succinyldiaminopimelate, like N-succinyldiaminopmelate-aminotransferase (EC 2.6.1.17, DapC, an enzyme of lysine biosynthesis) (see MEDLINE:99175097)
Probab=100.00 E-value=3.4e-32 Score=231.01 Aligned_cols=225 Identities=39% Similarity=0.658 Sum_probs=188.2
Q ss_pred cccCCCChhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCC
Q psy6548 5 FPVKSKQVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRP 83 (242)
Q Consensus 5 ~~~~~~d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~ 83 (242)
..++|||++. +...++++++|+++|+++++|..+++.+++++|.++|++||+++|+||+|++|++.|........++.+
T Consensus 153 ~~~~~~d~~~l~~~~~~~~~~v~~~p~~~~~g~~~~~~~~l~~i~~l~~~~~~~~i~De~~~~~~~~g~~~~~~~~~~~~ 232 (379)
T TIGR00707 153 SYAPYNDIESLKKAIDDETAAVIVEPIQGEGGVNPASAEFLKALREICKDKDALLIFDEVQTGIGRTGKFFAYEHYGIEP 232 (379)
T ss_pred eeeCCCCHHHHHHHhhhCeeEEEEEccccCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccchhhhHHhcCCCC
Confidence 3467888888 555456799999999999988777889999999999999999999999999888776544444567788
Q ss_pred CEEEeeccccCCccchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhhcC
Q psy6548 84 DIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELRSRLS 163 (242)
Q Consensus 84 ~~~~~sK~~~~g~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l~~~l~ 163 (242)
|++++||++++| +|+||+++++++++.+.+.....+++.++++++++.++++.++.+++.+++++++++++++| +++.
T Consensus 233 d~~t~sK~~~~G-~riG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~aaL~~~~~~~~~~~~~~~~~~~~~~l-~~~~ 310 (379)
T TIGR00707 233 DIITLAKGLGGG-VPIGATLAKEEVAEAFTPGDHGSTFGGNPLACAAALAVLEVIEKERLLENVKEKGDYFKERL-EELG 310 (379)
T ss_pred CEEEEcccccCC-cccEEEEEcHHHHhhhcCCCCCCCCCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH-HHHH
Confidence 999999999999 99999999999999988766677888899999999999998876678899999999999999 5543
Q ss_pred CCC-CCeEeeeceeEEEEecCCchhHHHHHHHHHHCCceeccCCCCEEEEeccCcCCHHHHHHHHHHHHHHH
Q psy6548 164 PDI-VPVVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTI 234 (242)
Q Consensus 164 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~lR~~~~~~~t~e~i~~~~~~l~~~l 234 (242)
... ....++.|.++++.++.+ ..++.+.|.++||.+.|.+.+++|+++++.++++++++++++|++++
T Consensus 311 ~~~~~~~~~~~g~~~~~~~~~~---~~~~~~~l~~~Gv~v~~~~~~~lRi~~~~~~t~~~i~~~~~~l~~~~ 379 (379)
T TIGR00707 311 KNYPNKEVRGKGLMLGIELEAP---CKDIVKKALEKGLLVNCAGPKVLRFLPPLIITKEEIDEAVSALEEAI 379 (379)
T ss_pred hhCCCCccccCceEEEEEecCc---HHHHHHHHHHCCcEEeeCCCCEEEEECCCcCCHHHHHHHHHHHHHhC
Confidence 211 122345678888887653 57899999999999999877899999999999999999999998753
No 80
>PRK00062 glutamate-1-semialdehyde aminotransferase; Provisional
Probab=100.00 E-value=1e-32 Score=236.78 Aligned_cols=229 Identities=26% Similarity=0.402 Sum_probs=193.3
Q ss_pred ccccCCCChhh-h-cCC--CCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccC
Q psy6548 4 QFPVKSKQVPA-K-LKS--NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYE 79 (242)
Q Consensus 4 ~~~~~~~d~~~-~-~~~--~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~ 79 (242)
.+.+||||+++ + .+. .+++++|++||+++++|.++++++|+++|+++|++||+++|+||+|+|+ ++|..+...++
T Consensus 176 ~~~~~~~d~~~l~~~i~~~~~~~aaiivEpv~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~G~-r~g~~~~~~~~ 254 (426)
T PRK00062 176 TLTAPYNDLEAVEELFEEYGDEIAAVIVEPVAGNMGVVPPKPGFLEGLRELCDEHGALLIFDEVMTGF-RVALGGAQGYY 254 (426)
T ss_pred eEEcCCCCHHHHHHHHHhCCCcEEEEEEeCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeechhcc-ccCCccHHHHh
Confidence 57789999988 3 342 3689999999999999999999999999999999999999999999998 67766666678
Q ss_pred CCCCCEEEeeccccCCccchheeEeChhhhhccCC---CCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Q psy6548 80 DVRPDIVILGKALSGGLYPISAVLADDEVMGTLVP---GTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRS 156 (242)
Q Consensus 80 ~~~~~~~~~sK~~~~g~~~~g~~~~~~~~~~~l~~---~~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~ 156 (242)
++.||++++||++++| +|+|++++++++++.+.+ ..+.+|+++++++++++.++++.++++++.++++++.+++++
T Consensus 255 ~~~pDi~~~gK~l~~G-~p~ga~~~~~~i~~~~~~~~~~~~~~T~~~~p~~~aaa~a~L~~~~~~~~~~~~~~~~~~~~~ 333 (426)
T PRK00062 255 GVTPDLTTLGKIIGGG-LPVGAFGGRREIMEQLAPLGPVYQAGTLSGNPLAMAAGLATLKLLKEPGFYEELEALTKRLAE 333 (426)
T ss_pred CCCcchHhhhhHhhCC-CcceeeeEHHHHHHhhccCCCceecccCcCCHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 8899999999999999 999999999999998853 245678899999999999999999877889999999999999
Q ss_pred HHHhhcC--CCCCCeEeeeceeEEEEecCCc------------hhHHHHHHHHHHCCceeccCCCCEEEEeccCcCCHHH
Q psy6548 157 ELRSRLS--PDIVPVVRGKGLLNAIVLDKSI------------LEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQE 222 (242)
Q Consensus 157 ~l~~~l~--~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~l~~~gi~~~~~~~~~lR~~~~~~~t~e~ 222 (242)
.| +++. ........+.|.++.+.+..+. ..+..+.+.|+++|+++.+.+.+.++++ +.+|++|
T Consensus 334 ~l-~~~~~~~~~~~~vrg~G~~~~i~l~~~~~~~~~~~~~~~~~~~~~i~~~l~~~Gv~v~~~~~~~~~~~--~~~t~~e 410 (426)
T PRK00062 334 GL-KEAAKKAGIPLTVNRVGSMFGLFFTDEPVTNYADAKKSDTERFARFFHAMLDEGVYLAPSQFEAGFVS--AAHTDED 410 (426)
T ss_pred HH-HHHHHHcCCceEEEEecceEEEEEecCCCcchhhhccccHHHHHHHHHHHHHCCeEeecCCcCceeee--ccCCHHH
Confidence 99 5442 2344556788999998886421 1246899999999999988766677775 7899999
Q ss_pred HHHHHHHHHHHHHHH
Q psy6548 223 LREGLDIIINTINTM 237 (242)
Q Consensus 223 i~~~~~~l~~~l~~~ 237 (242)
+++++++|++++..+
T Consensus 411 i~~~~~~l~~~l~~~ 425 (426)
T PRK00062 411 IEKTLEAARKAFAAL 425 (426)
T ss_pred HHHHHHHHHHHHHhh
Confidence 999999999998764
No 81
>PRK08088 4-aminobutyrate aminotransferase; Validated
Probab=100.00 E-value=6.4e-32 Score=232.08 Aligned_cols=217 Identities=34% Similarity=0.642 Sum_probs=189.3
Q ss_pred CCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEEeeccccCCccc
Q psy6548 19 NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYP 98 (242)
Q Consensus 19 ~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~sK~~~~g~~~ 98 (242)
.+++++|++||+++++|.++++++++++|+++|++||+++|+||+|+|++++|..++++..++.||+.+|||++++| +|
T Consensus 197 ~~~~aavi~Epi~~~~G~~~~~~~~~~~l~~l~~~~~~~lI~Dev~~g~g~~g~~~~~~~~~~~pdi~s~sK~l~~G-~r 275 (425)
T PRK08088 197 PEDIAAIIIEPVQGEGGFYAASPAFMQRLRALCDEHGIMLIADEVQTGAGRTGTLFAMEQMGVAADLTTFAKSIAGG-FP 275 (425)
T ss_pred CCceEEEEECcccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCcchhHHhhcCCCCCEEEEeccccCC-Cc
Confidence 47899999999999999999999999999999999999999999999998888766666778899999999999999 99
Q ss_pred hheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhhcCC--CCCCeEeeecee
Q psy6548 99 ISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELRSRLSP--DIVPVVRGKGLL 176 (242)
Q Consensus 99 ~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l~~~l~~--~~~~~~~~~~~~ 176 (242)
+||+++++++++.+....+..+++++++.++++.++++.++.+++.+++++..+++++.| +.+.. .....+.+.|++
T Consensus 276 ig~v~~~~~~~~~~~~~~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l-~~l~~~~~~~~~v~g~G~~ 354 (425)
T PRK08088 276 LAGVTGRAEVMDAIAPGGLGGTYAGNPIACAAALAVLKVFEQENLLQKANALGEKLKDGL-LAIAEKHPEIGDVRGLGAM 354 (425)
T ss_pred ceeeEecHHHHhhcCCCCCCCCCCcCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH-HHHHHhCCCeEEEeccceE
Confidence 999999999999998877888999999999999999998887888999999999999998 55532 233455677999
Q ss_pred EEEEecCC-------chhHHHHHHHHHHCCceeccCC--CCEEEEeccCcCCHHHHHHHHHHHHHHHHHH
Q psy6548 177 NAIVLDKS-------ILEVYDVCIKMKDAGLVTKPIS--NNIIRLSPALNITEQELREGLDIIINTINTM 237 (242)
Q Consensus 177 ~~~~~~~~-------~~~~~~~~~~l~~~gi~~~~~~--~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~ 237 (242)
+|+.+.++ ......+.+.+.++|+.+.+.+ .+.+|++|++.++++++++++++|++++.++
T Consensus 355 ~~l~l~~~~~~~~p~~~~~~~l~~~~~~~Gv~~~~~~~~~~~iRl~~~~~~t~~ei~~~i~~l~~~l~~~ 424 (425)
T PRK08088 355 IAIELFEDGDHSKPNAKLTAQIVARARDKGLILLSCGPYYNVLRILVPLTIEDAQIRQGLEIIAQCFDEA 424 (425)
T ss_pred EEEEEecCCCCCCCCHHHHHHHHHHHHhCCCEEecCCCCCCEEEEECCCCcCHHHHHHHHHHHHHHHHhh
Confidence 99998432 1347789999999999887653 4889999999999999999999999998764
No 82
>TIGR03251 LAT_fam L-lysine 6-transaminase. Characterized members of this protein family are L-lysine 6-transaminase, also called lysine epsilon-aminotransferase (LAT). The immediate product of the reaction of this enzyme on lysine, 2-aminoadipate 6-semialdehyde, becomes 1-piperideine 6-carboxylate, or P6C. This product may be converted subsequently to pipecolate or alpha-aminoadipate, lysine catabolites that may be precursors of certain seconary metabolites.
Probab=100.00 E-value=2.3e-31 Score=228.51 Aligned_cols=208 Identities=33% Similarity=0.499 Sum_probs=174.8
Q ss_pred CCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEEeeccccCCccc
Q psy6548 19 NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYP 98 (242)
Q Consensus 19 ~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~sK~~~~g~~~ 98 (242)
.++++++++||+++++|.++|+++|+++|+++|++||+++|+||+++|||++|..++++++++.||+++++|++..
T Consensus 216 ~~~iAavivEPv~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG~GrtG~~~a~~~~gv~PDi~~~gK~~~~---- 291 (431)
T TIGR03251 216 PHDIACFIAEPIQGEGGDNHFRPEFLRAMRALCDEHDALLIFDEVQTGVGLTGTAWAYQQLGVQPDIVAFGKKTQV---- 291 (431)
T ss_pred CCcEEEEEEeccccCCCCcCCCHHHHHHHHHHHHHcCCEEEEecchhccCccchHHHHHhcCCCCCEEEecccCcc----
Confidence 5789999999999999999999999999999999999999999999999999988888899999999999999741
Q ss_pred hheeEeCh--hhhhc-cC-CCCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhhcC--CC-CCCeEe
Q psy6548 99 ISAVLADD--EVMGT-LV-PGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELRSRLS--PD-IVPVVR 171 (242)
Q Consensus 99 ~g~~~~~~--~~~~~-l~-~~~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l~~~l~--~~-~~~~~~ 171 (242)
.|++.+.+ +++.. +. +..+.+||++||++++++.++++.++++++.++++++.+++++.| +++. .. ....+.
T Consensus 292 ~g~~~~~~i~~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~L~~l~~~~l~~~~~~~g~~l~~~L-~~l~~~~~~~i~~vr 370 (431)
T TIGR03251 292 CGIMAGRRVDEVADNVFAVPSRLNSTWGGNLVDMVRATRILEIIEEERLVDNARVQGAHLLARL-HELAAEFPHLVSNPR 370 (431)
T ss_pred ceEEecchHHHhhhhcccCccccCCCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH-HHHHHhCccceeccc
Confidence 23333332 22221 11 224678999999999999999999988888899999999999999 5542 22 445567
Q ss_pred eeceeEEEEecCCchhHHHHHHHHHHCCceeccCCCCEEEEeccCcCCHHHHHHHHHHHHH
Q psy6548 172 GKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIIN 232 (242)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~lR~~~~~~~t~e~i~~~~~~l~~ 232 (242)
+.|.++.++++.. .....+.+.|+++||++.+.+.+.+|++|++.+|++|+++++++|++
T Consensus 371 g~G~~~~i~~~~~-~~~~~~~~~l~~~Gvl~~~~g~~~lr~~P~l~~t~~eid~~l~~l~~ 430 (431)
T TIGR03251 371 GRGLMCAFDLPST-ADRDEVIRQLYREGVLLLGCGERSIRFRPPLTVTREEIDAAIDAIRR 430 (431)
T ss_pred ccceeEEEEeCCH-HHHHHHHHHHHhCCeEEecCCCCeEEEECCccCCHHHHHHHHHHHHh
Confidence 7899999999764 45667999999999999988778999999999999999999999875
No 83
>PF00202 Aminotran_3: Aminotransferase class-III; InterPro: IPR005814 Aminotransferases share certain mechanistic features with other pyridoxalphosphate-dependent enzymes, such as the covalent binding of the pyridoxalphosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. One of these, called class-III, includes acetylornithine aminotransferase (2.6.1.11 from EC), which catalyzes the transfer of an amino group from acetylornithine to alpha-ketoglutarate, yielding N-acetyl-glutamic-5-semi-aldehyde and glutamic acid; ornithine aminotransferase (2.6.1.13 from EC), which catalyzes the transfer of an amino group from ornithine to alpha-ketoglutarate, yielding glutamic-5-semi-aldehyde and glutamic acid; omega-amino acid--pyruvate aminotransferase (2.6.1.18 from EC), which catalyzes transamination between a variety of omega-amino acids, mono- and diamines, and pyruvate; 4-aminobutyrate aminotransferase (2.6.1.19 from EC) (GABA transaminase), which catalyzes the transfer of an amino group from GABA to alpha-ketoglutarate, yielding succinate semialdehyde and glutamic acid; DAPA aminotransferase (2.6.1.62 from EC), a bacterial enzyme (bioA), which catalyzes an intermediate step in the biosynthesis of biotin, the transamination of 7-keto-8-aminopelargonic acid to form 7,8-diaminopelargonic acid; 2,2-dialkylglycine decarboxylase (4.1.1.64 from EC), a Burkholderia cepacia (Pseudomonas cepacia) enzyme (dgdA) that catalyzes the decarboxylating amino transfer of 2,2-dialkylglycine and pyruvate to dialkyl ketone, alanine and carbon dioxide; glutamate-1-semialdehyde aminotransferase (5.4.3.8 from EC) (GSA); Bacillus subtilis aminotransferases yhxA and yodT; Haemophilus influenzae aminotransferase HI0949; and Caenorhabditis elegans aminotransferase T01B11.2.; GO: 0008483 transaminase activity, 0030170 pyridoxal phosphate binding; PDB: 2JJE_A 2CJH_A 2CIN_A 2JJH_A 2JJF_A 2JJG_A 2CJG_A 2CJD_A 3BS8_A 2YKX_C ....
Probab=99.97 E-value=2.2e-30 Score=216.03 Aligned_cols=164 Identities=48% Similarity=0.850 Sum_probs=150.9
Q ss_pred CCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEEeeccccCCcc
Q psy6548 18 SNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLY 97 (242)
Q Consensus 18 ~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~sK~~~~g~~ 97 (242)
..+++++|++||+++.+|.++++++|+++|+++|++||+++|+||+++|||++|..++++++++.||+++++|++++| +
T Consensus 174 ~~~~iaavivEPi~g~~G~~~~~~~~l~~l~~lc~~~gillI~DEV~tG~gRtG~~~a~~~~gv~PDiv~~gK~l~gG-~ 252 (339)
T PF00202_consen 174 NADEIAAVIVEPIQGEGGMIPPPPEYLRELRELCREHGILLIADEVQTGFGRTGKFFASEHYGVDPDIVTFGKGLGGG-L 252 (339)
T ss_dssp HGGGEEEEEEESSBTTTTSBEE-TTHHHHHHHHHHHTT-EEEEEETTTTTTTTSSSSGHHHHTSSSSEEEEEGGGGTT-S
T ss_pred cCCcEEEEEEeccccccCccccccchhhehcccccccccceecccccccccccCCccceecccccCcccccccchhhh-h
Confidence 367899999999999999999999999999999999999999999999999999999999999999999999999999 9
Q ss_pred chheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhhcCC--CCCCeEeeece
Q psy6548 98 PISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELRSRLSP--DIVPVVRGKGL 175 (242)
Q Consensus 98 ~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l~~~l~~--~~~~~~~~~~~ 175 (242)
|+|.+++++++++.+.+..+++|++++|+++++++++++.++++++.+++++...++++.| +++.. ..+..+.+.|.
T Consensus 253 p~sav~~~~~i~~~~~~~~~~~T~~g~p~~~aaa~~~l~~~~~~~~~~~~~~~g~~l~~~L-~~l~~~~~~i~~vrg~Gl 331 (339)
T PF00202_consen 253 PISAVLGSEEIMEAFQPGSHGSTFGGNPLSCAAALATLEILEEEDLLERVRELGERLREGL-RELAARYPLIGEVRGIGL 331 (339)
T ss_dssp SEEEEEEEHHHHTTSCTTSSTCTTTT-HHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH-HHHHHHTTTEEEEEEETT
T ss_pred hcccccccchhhccccccccccccccchHhhhhhhhHHHhhccHHHHHHHHHHHHHHHHHH-HHHHHhCCCeEEEeeeCe
Confidence 9999999999999998888999999999999999999999999999999999999999999 67753 56778899999
Q ss_pred eEEEEecC
Q psy6548 176 LNAIVLDK 183 (242)
Q Consensus 176 ~~~~~~~~ 183 (242)
++.+++.+
T Consensus 332 ~~~ie~~k 339 (339)
T PF00202_consen 332 MIGIELVK 339 (339)
T ss_dssp EEEEEESS
T ss_pred EEEEEEEC
Confidence 99998753
No 84
>PRK06209 glutamate-1-semialdehyde 2,1-aminomutase; Provisional
Probab=99.96 E-value=4.4e-28 Score=208.21 Aligned_cols=221 Identities=21% Similarity=0.322 Sum_probs=173.4
Q ss_pred ccccCCCChhh--hcCC--CCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccC
Q psy6548 4 QFPVKSKQVPA--KLKS--NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYE 79 (242)
Q Consensus 4 ~~~~~~~d~~~--~~~~--~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~ 79 (242)
+..|+|||+++ +.+. .+++++|++||++++ .|+.+|+++|.++|++||+++|+||+|+|++..+. +....+
T Consensus 166 ~~~~~~~d~~~l~~~l~~~~~~~aavi~Epv~g~----~~~~~~l~~l~~lc~~~g~lLI~DEv~tG~~~~~~-g~~~~~ 240 (431)
T PRK06209 166 TVTFRYNDIASLEALFEDHPGRIACVILEPATAD----EPQDGFLHEVRRLCHENGALFILDEMITGFRWHMR-GAQKLY 240 (431)
T ss_pred ccccCCCCHHHHHHHHHhCCCCEEEEEEccccCC----CCCHHHHHHHHHHHHHcCCEEEEEcccccCCcCcc-hhhHHh
Confidence 46789999998 4443 358999999999876 77889999999999999999999999999865432 233457
Q ss_pred CCCCCEEEeeccccCCccchheeEeChhhhhc--cC----C--CCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHH
Q psy6548 80 DVRPDIVILGKALSGGLYPISAVLADDEVMGT--LV----P--GTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMG 151 (242)
Q Consensus 80 ~~~~~~~~~sK~~~~g~~~~g~~~~~~~~~~~--l~----~--~~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~ 151 (242)
++.||++++||++++| +++|++++++++++. +. . ..+++|+++||+++++++++++.++++++.++++++.
T Consensus 241 gv~PDi~t~gK~lggG-~p~~av~~~~~i~~~~~~~~~~~~~~~~~~~T~~~np~~~aaa~a~l~~i~~~~~~~~~~~~g 319 (431)
T PRK06209 241 GIVPDLSCFGKALGNG-FAVSALAGKREYMELGGLEHTDRERVFLLSTTHGAETHALAAAIATMAIYRDEDVIERLHEQG 319 (431)
T ss_pred CCCcceeeehhhhcCC-cccEEEEEHHHHHhhhcccccCCCCceeeccCCCCCHHHHHHHHHHHHHHhccCHHHHHHHHH
Confidence 8999999999999999 899999999998876 31 1 1367788899999999999999998888999999999
Q ss_pred HHHHHHHHhhcC--CCCCCeEeeeceeEEEEecC------Cc-hhHHHHHHHHHHCCceeccCCCCEEEEeccCcCCHHH
Q psy6548 152 EIFRSELRSRLS--PDIVPVVRGKGLLNAIVLDK------SI-LEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQE 222 (242)
Q Consensus 152 ~~l~~~l~~~l~--~~~~~~~~~~~~~~~~~~~~------~~-~~~~~~~~~l~~~gi~~~~~~~~~lR~~~~~~~t~e~ 222 (242)
+++++.| +++. ......+.+.|.++.+.+.. +. .....+.++|+++|+++.+ ++++ ..+|++|
T Consensus 320 ~~l~~~L-~~~~~~~~~~~~vr~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~p~-----l~is--~~ht~~d 391 (431)
T PRK06209 320 AKLAAGV-NEAAAEHGLQDHVRVSGRPCCLTYSTLDGNGQPSQAFRTLFLQETIRRGVLMPS-----LVVS--YAHGDAD 391 (431)
T ss_pred HHHHHHH-HHHHHhCCCCeEEEeecceEEEEEecCCcccCCcHHHHHHHHHHHHHCCccccc-----cccc--ccCCHHH
Confidence 9999999 5543 23333445555555544421 10 1233678899999998732 4454 7899999
Q ss_pred HHHHHHHHHHHHHHHh
Q psy6548 223 LREGLDIIINTINTMA 238 (242)
Q Consensus 223 i~~~~~~l~~~l~~~~ 238 (242)
|++++++|++++.++.
T Consensus 392 Id~~l~~l~~~l~~~~ 407 (431)
T PRK06209 392 IERTIDAVHGALGVYR 407 (431)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999998874
No 85
>PLN02822 serine palmitoyltransferase
Probab=99.96 E-value=1.3e-27 Score=207.54 Aligned_cols=227 Identities=18% Similarity=0.234 Sum_probs=176.3
Q ss_pred cccccCCCChhh--hcC---CC-----CCE-EEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEecccc-c-cCc
Q psy6548 3 LQFPVKSKQVPA--KLK---SN-----PNI-CAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQT-G-LGR 69 (242)
Q Consensus 3 ~~~~~~~~d~~~--~~~---~~-----~~~-~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~-~-~~~ 69 (242)
.++.|+|||.++ +.+ .+ +++ ++|++|++++++|.+.+ +++|+++|++||+++|+||+|+ | +|+
T Consensus 216 ~~~~~~~nd~~~l~~~l~~~~~~~~~~~~~~~~Ivve~i~~~~G~i~~----L~~i~~l~~k~~~~LIvDEa~s~gvlG~ 291 (481)
T PLN02822 216 TIVYFKHNDMESLRNTLEKLTAENKRKKKLRRYIVVEAIYQNSGQIAP----LDEIVRLKEKYRFRVLLDESNSFGVLGK 291 (481)
T ss_pred eEEEECCCCHHHHHHHHHHHhhhhcccCCCcEEEEEecCCCCCCCccC----HHHHHHHHHHcCCEEEEECCccccccCC
Confidence 467899999977 222 11 234 89999999999998887 8999999999999999999996 2 466
Q ss_pred cCcccccccCCC---CCCEEE--eeccccCCccchheeEeChhhhhccCCCCCCCCCCCC--HHHHHHHHHHHHHHHh-c
Q psy6548 70 TGKLLAIHYEDV---RPDIVI--LGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGN--PLACKLAMTALDVILE-E 141 (242)
Q Consensus 70 ~g~~~~~~~~~~---~~~~~~--~sK~~~~g~~~~g~~~~~~~~~~~l~~~~~~~~~~~~--~~~~~~a~a~l~~~~~-~ 141 (242)
+|.+ ..+++++ .+|+++ |||+++ ...||+++++++++.++....+++|+++ +..++++.++++.++. +
T Consensus 292 ~G~G-~~e~~~v~~~~~dii~~s~sKalg---~~GG~i~g~~~ii~~~~~~~~~~~fsa~lPp~~~~Aa~~aL~~l~~~~ 367 (481)
T PLN02822 292 SGRG-LSEHFGVPIEKIDIITAAMGHALA---TEGGFCTGSARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEDNP 367 (481)
T ss_pred CCCC-hHHHcCCCCCCCeEEEecchhhhh---hCCeEEEcCHHHHHHHHhcCCceeeccccCHHHHHHHHHHHHHHHhCH
Confidence 6655 4466776 578877 789998 2236789999999988876677788766 6677888888987765 5
Q ss_pred cHHHHHHHHHHHHHHHHHhhcCCCCCCeEeeeceeEEEEecCC-------chhHHHHHHHHH-HCCceeccC--------
Q psy6548 142 NMIENAYKMGEIFRSELRSRLSPDIVPVVRGKGLLNAIVLDKS-------ILEVYDVCIKMK-DAGLVTKPI-------- 205 (242)
Q Consensus 142 ~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~l~-~~gi~~~~~-------- 205 (242)
+..++++++++++++.| +.+.. +....+..++++++.++.. .....++++.|+ ++||++.+.
T Consensus 368 ~~~~~l~~~~~~l~~~L-~~~~g-~~~~~~~~spi~~l~l~~~~~~~~~~~~~~~~~~~~Ll~e~GV~v~~~~~~~~~~~ 445 (481)
T PLN02822 368 SVLAKLKENIALLHKGL-SDIPG-LSIGSNTLSPIVFLHLEKSTGSAKEDLSLLEHIADRMLKEDSVLVVVSKRSTLDKC 445 (481)
T ss_pred HHHHHHHHHHHHHHHHH-HhcCC-cccCCCCCCCEEEEEeCCCcccccchHHHHHHHHHHHHhcCCEEEEeeCCCCcCCC
Confidence 68899999999999999 65431 2222234678888888642 022468999998 889999864
Q ss_pred -CCCEEEEeccCcCCHHHHHHHHHHHHHHHHHHhh
Q psy6548 206 -SNNIIRLSPALNITEQELREGLDIIINTINTMAA 239 (242)
Q Consensus 206 -~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~~~ 239 (242)
.+..+|+++++.+|++||++++++|++++.++.+
T Consensus 446 ~~~~~lRi~is~~~t~edI~~~~~~l~~~~~~~~~ 480 (481)
T PLN02822 446 RLPVGIRLFVSAGHTESDILKASESLKRVAASVLK 480 (481)
T ss_pred CCCCcEEEEECCCCCHHHHHHHHHHHHHHHHHHhc
Confidence 1347999999999999999999999999988754
No 86
>COG0156 BioF 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism]
Probab=99.95 E-value=4.3e-27 Score=196.02 Aligned_cols=219 Identities=19% Similarity=0.287 Sum_probs=171.8
Q ss_pred ccccccCCCChhh--hcCCC---C--CEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccc-cc-cCccCc
Q psy6548 2 SLQFPVKSKQVPA--KLKSN---P--NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQ-TG-LGRTGK 72 (242)
Q Consensus 2 ~~~~~~~~~d~~~--~~~~~---~--~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~-~~-~~~~g~ 72 (242)
+.++.|+|||+++ +.+++ . +...|++|+++||.|++.| |++|.+++++|++++++||+| .| +|..|.
T Consensus 145 a~~~~f~HnD~~~Le~~l~~~~~~~~~~~~IvtegVfSMdGdiAp----L~~l~~L~~ky~a~L~VDEAHa~Gv~G~~Gr 220 (388)
T COG0156 145 AEVRRFKHNDLDHLEALLEEARENGARRKLIVTEGVFSMDGDIAP----LPELVELAEKYGALLYVDEAHAVGVLGPNGR 220 (388)
T ss_pred CcEEEecCCCHHHHHHHHHhhhccCCCceEEEEeccccCCCCcCC----HHHHHHHHHHhCcEEEEEccccccccCCCCc
Confidence 3578999999988 44433 2 4799999999999999998 999999999999999999999 45 566776
Q ss_pred ccccccCCCCC---CEE--EeeccccCCccchheeEeChhhhhccCCCCCCCCCC--CCHHHHHHHHHHHHHHHh-ccHH
Q psy6548 73 LLAIHYEDVRP---DIV--ILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYG--GNPLACKLAMTALDVILE-ENMI 144 (242)
Q Consensus 73 ~~~~~~~~~~~---~~~--~~sK~~~~g~~~~g~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~a~a~l~~~~~-~~~~ 144 (242)
++. +++|+.+ |++ +|||+||+ -.||+.+++.+++.+........|+ .+|...+++.++++.+++ ++.+
T Consensus 221 G~~-e~~g~~~~~vdi~~gTlsKAlGs---~Gg~v~g~~~~~d~L~~~ar~~ifStalpP~~aaa~~~al~~l~~~~~~r 296 (388)
T COG0156 221 GLA-EHFGLEPEEVDIIVGTLGKALGS---SGGYIAGSAALIDYLRNRARPFIFSTALPPAVAAAALAALRILEEGPERR 296 (388)
T ss_pred cHH-HHhCCCCccceEEEEEchhhhcc---cCceeeCcHHHHHHHHHhCCceeccCCCCHHHHHHHHHHHHHHHhCHHHH
Confidence 543 5666643 333 39999992 2467999999999998765555454 456666678889998875 5678
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCCeEeeeceeEEEEecCCchhHHHHHHHHHHCCceecc-------CCCCEEEEeccCc
Q psy6548 145 ENAYKMGEIFRSELRSRLSPDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKP-------ISNNIIRLSPALN 217 (242)
Q Consensus 145 ~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~-------~~~~~lR~~~~~~ 217 (242)
++++++...++..+ +..+. ...+..++++.+.+.++ ..+.++..+|+++||.+.+ .+..++|++++..
T Consensus 297 ~~L~~~~~~~~~~~-~~~~~---~~~~s~s~I~pv~~gd~-~~a~~~s~~l~~~Gi~v~~i~~PTVp~gtarlRi~lta~ 371 (388)
T COG0156 297 ERLQELAAFFRSLL-KALGL---VLLPSESPIIPVILGDE-ERALEASRALLEEGIYVSAIRPPTVPKGTARLRITLTAA 371 (388)
T ss_pred HHHHHHHHHHHHHH-HhcCC---ccCCCCCCeeeeEeCCH-HHHHHHHHHHHHCCeeEeeecCCCCCCCcceEEEEecCC
Confidence 89999999998666 55442 11344567777888776 6789999999999999963 3668999999999
Q ss_pred CCHHHHHHHHHHHHHH
Q psy6548 218 ITEQELREGLDIIINT 233 (242)
Q Consensus 218 ~t~e~i~~~~~~l~~~ 233 (242)
+|++||+++++.|.++
T Consensus 372 ht~~~I~~l~~~l~~~ 387 (388)
T COG0156 372 HTEEDIDRLAEALSEV 387 (388)
T ss_pred CCHHHHHHHHHHHHhh
Confidence 9999999999998764
No 87
>PLN02955 8-amino-7-oxononanoate synthase
Probab=99.95 E-value=1.6e-26 Score=196.81 Aligned_cols=216 Identities=11% Similarity=0.113 Sum_probs=164.5
Q ss_pred cccccCCCChhh--hcCC--CCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccc--cCccCccccc
Q psy6548 3 LQFPVKSKQVPA--KLKS--NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTG--LGRTGKLLAI 76 (242)
Q Consensus 3 ~~~~~~~~d~~~--~~~~--~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~--~~~~g~~~~~ 76 (242)
+++.|+|||+++ +.++ .++.++|++|++++|.|+++| +++|.++|++||+++|+||+|+. +|..|.+ ..
T Consensus 227 ~~~~f~HND~~~Le~~L~~~~~~~~~Vv~EgV~SmdGdiap----L~eL~~L~~~~ga~LiVDEAH~~Gv~G~~G~G-~~ 301 (476)
T PLN02955 227 EVFVYRHCDMYHLNSLLSSCKMKRKVVVTDSLFSMDGDFAP----MEELSQLRKKYGFLLVIDDAHGTFVCGENGGG-VA 301 (476)
T ss_pred eEEEeCCCCHHHHHHHHHhCCCCceEEEEeCCCCCCCCcCC----HHHHHHHHHHcCcEEEEcccccCceecCCCCc-HH
Confidence 467899999999 4443 346789999999999999888 99999999999999999999963 4665554 34
Q ss_pred ccCCCCCCE----EEeeccccCCccchheeEeChhhhhccCCCCCCCCCC--CCHHHHHHHHHHHHHHHhc-cHHHHHHH
Q psy6548 77 HYEDVRPDI----VILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYG--GNPLACKLAMTALDVILEE-NMIENAYK 149 (242)
Q Consensus 77 ~~~~~~~~~----~~~sK~~~~g~~~~g~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~a~a~l~~~~~~-~~~~~~~~ 149 (242)
+++++.+++ .+|||++| .+.|++++++++++.++.......|+ .++...++++++++.++.+ ..++++++
T Consensus 302 e~~g~~~di~ii~~TLsKA~G---~~GGfi~gs~~~~~~l~~~~~~~ifStalpp~~aaa~laal~l~~~~~~~r~~L~~ 378 (476)
T PLN02955 302 EEFNCEADVDLCVGTLSKAAG---CHGGFIACSKKWKQLIQSRGRSFIFSTAIPVPMAAAAYAAVVVARKEKWRRKAIWE 378 (476)
T ss_pred HHhCCCCCCcEEEEeCccchh---ccCceeecHHHHHHHHHHhCCCCeecccccHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 566765554 44999998 34566889998888887654444443 3455666777888887653 45567777
Q ss_pred HHHHHHHHHHhhcCCCCCCeEeeeceeEEEEecCCchhHHHHHHHHHHCCceecc-------CCCCEEEEeccCcCCHHH
Q psy6548 150 MGEIFRSELRSRLSPDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKP-------ISNNIIRLSPALNITEQE 222 (242)
Q Consensus 150 ~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~-------~~~~~lR~~~~~~~t~e~ 222 (242)
+.+++++.+ + ... .++++.+.+..+ ..+..++++|+++||++.+ .+..++|++++..||++|
T Consensus 379 n~~~fr~~~----G--~~~----~sPI~pI~ig~~-~~a~~~~~~L~~~Gi~v~~i~yPtVP~g~~rLRi~lsA~Ht~ed 447 (476)
T PLN02955 379 RVKEFKALS----G--VDI----SSPIISLVVGNQ-EKALKASRYLLKSGFHVMAIRPPTVPPNSCRLRVTLSAAHTTED 447 (476)
T ss_pred HHHHHHHhc----C--CCC----CCCEEEEEeCCH-HHHHHHHHHHHHCCCEEEEECCCCCCCCCceEEEeeCCCCCHHH
Confidence 777776632 2 111 267788888776 7788899999999999963 356689999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q psy6548 223 LREGLDIIINTINTM 237 (242)
Q Consensus 223 i~~~~~~l~~~l~~~ 237 (242)
|+++++.|.++....
T Consensus 448 Id~lv~~L~~~~~~~ 462 (476)
T PLN02955 448 VKKLITALSSCLDFD 462 (476)
T ss_pred HHHHHHHHHHHHhhh
Confidence 999999999887654
No 88
>COG0436 Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]
Probab=99.95 E-value=1.8e-26 Score=195.39 Aligned_cols=220 Identities=19% Similarity=0.221 Sum_probs=167.1
Q ss_pred hhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCc-ccc-cccCCCCCCEEE-
Q psy6548 12 VPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGK-LLA-IHYEDVRPDIVI- 87 (242)
Q Consensus 12 ~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~-~~~-~~~~~~~~~~~~- 87 (242)
++. +...+.+|++|+++.++|||| .+.+++++++|+++|++||++||+||+|.++.+.+. ..+ .+..+.....++
T Consensus 153 ~~~l~~~i~~ktk~i~ln~P~NPTG-av~~~~~l~~i~~~a~~~~i~ii~DEiY~~l~yd~~~~~s~~~~~~~~~~~i~i 231 (393)
T COG0436 153 LEDLEAAITPKTKAIILNSPNNPTG-AVYSKEELKAIVELAREHDIIIISDEIYEELVYDGAEHPSILELAGARDRTITI 231 (393)
T ss_pred HHHHHhhcCccceEEEEeCCCCCcC-cCCCHHHHHHHHHHHHHcCeEEEEehhhhhcccCCCCcCCHhhcCCCcceEEEE
Confidence 444 444555999999999999999 466788999999999999999999999999866663 221 122221112222
Q ss_pred --eecccc-CCccchheeEeC-hhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHh----ccHHHHHHHHHHHHHHHHH
Q psy6548 88 --LGKALS-GGLYPISAVLAD-DEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILE----ENMIENAYKMGEIFRSELR 159 (242)
Q Consensus 88 --~sK~~~-~g~~~~g~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~----~~~~~~~~~~~~~l~~~l~ 159 (242)
|||.++ +| ||+||++++ +++++.+.......+++.+.++|.++.++|+.... +...+.++++++.+.+.|
T Consensus 232 ~s~SK~~~mtG-wRvG~~v~~~~~l~~~~~~~~~~~~~~~~~~~Q~aa~~aL~~~~~~~~~~~~~~~~~~rrd~l~~~l- 309 (393)
T COG0436 232 NSFSKTYGMTG-WRIGWVVGPPEELIAALRKLKSYLTSCAPTPAQYAAIAALNGPQSDEVVEEMREEYRERRDLLVEAL- 309 (393)
T ss_pred ecccccccccc-cceeEeecChHHHHHHHHHHHHhcccCCCHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHH-
Confidence 899999 99 999999998 77877777554555667888999999999884321 233466888899999999
Q ss_pred hhcCCCCCCeEeeeceeEEEEecCCchhHHHHHHHHHHC-CceeccC-------CCCEEEEeccCcCCHHHHHHHHHHHH
Q psy6548 160 SRLSPDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDA-GLVTKPI-------SNNIIRLSPALNITEQELREGLDIII 231 (242)
Q Consensus 160 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-gi~~~~~-------~~~~lR~~~~~~~t~e~i~~~~~~l~ 231 (242)
++++.-.....+..+++.|.+++.. .+..+|+..|+++ ||.+.|+ +.+++|++ +..+.+++++++++++
T Consensus 310 ~~~~g~~~~~~p~Ga~Y~~~~i~~~-~d~~~f~~~Ll~~~gV~v~PG~~Fg~~~g~~~vRis--~~~~~~~l~~a~~rl~ 386 (393)
T COG0436 310 NEIGGLSVVKPPEGAFYLFPKIPEL-LDSEEFAKKLLEEAGVAVVPGSGFGEPPGEGYVRLS--LATSEETLEEALRRLA 386 (393)
T ss_pred HhcCCeeeccCCCeeEEEEeecCCC-CCHHHHHHHHHHhCCEEEecccccCCCCCCCeEEEE--EecCHHHHHHHHHHHH
Confidence 6665322333355778999998875 5789999999876 7999885 45799999 6677799999999999
Q ss_pred HHHHHH
Q psy6548 232 NTINTM 237 (242)
Q Consensus 232 ~~l~~~ 237 (242)
+.+...
T Consensus 387 ~~~~~~ 392 (393)
T COG0436 387 RFLAEY 392 (393)
T ss_pred HHHHhc
Confidence 988753
No 89
>KOG1403|consensus
Probab=99.95 E-value=8.2e-27 Score=182.47 Aligned_cols=218 Identities=30% Similarity=0.481 Sum_probs=191.1
Q ss_pred CCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCc-ccccccCCCCCCEEEeeccccCCcc
Q psy6548 19 NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGK-LLAIHYEDVRPDIVILGKALSGGLY 97 (242)
Q Consensus 19 ~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~-~~~~~~~~~~~~~~~~sK~~~~g~~ 97 (242)
...+++++.|+.++-+|+++|++.|++.+++-.+.+|-+.|.||++.|||+.|. .|+++.+++.||+++++|.+|.| .
T Consensus 207 g~gvAAfiAEslQSCGGQiiPPagYFq~Va~~Vr~aGGv~IaDEVQvGFGRvG~hyWafq~y~fiPDIVtmgKpmGNG-h 285 (452)
T KOG1403|consen 207 GQGVAAFIAESLQSCGGQIIPPAGYFQAVADAVRSAGGVCIADEVQVGFGRVGSHYWAFQTYNFIPDIVTMGKPMGNG-H 285 (452)
T ss_pred CCcHHHHHHHHHHhcCCcccCchhHHHHHHHHHhcCCCeEEeehhhhcccccchhhhhhhhhccccchheecccCCCC-C
Confidence 346889999999999999999999999999999999999999999999999997 56888899999999999999999 9
Q ss_pred chheeEeChhhhhccCCC--CCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhhcC--CCCCCeEeee
Q psy6548 98 PISAVLADDEVMGTLVPG--THGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELRSRLS--PDIVPVVRGK 173 (242)
Q Consensus 98 ~~g~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l~~~l~--~~~~~~~~~~ 173 (242)
|++.+..++++++.+... ....||++||++++++++.++..+++++..+.++.+.+|...| +++. ..++..+++.
T Consensus 286 PVa~VattkeIA~Af~atgv~YFNTyGGnPVsCAv~laVm~v~e~E~Lq~ha~~vG~~L~~lL-~~~k~kh~~IGDvRGv 364 (452)
T KOG1403|consen 286 PVAAVATTKEIAQAFHATGVEYFNTYGGNPVSCAVGLAVMRVCEDENLQEHAQQVGEKLEVLL-RRLKQKHECIGDVRGV 364 (452)
T ss_pred eeeEEeccHHHHHHhccccceehhccCCCchhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH-HHHhhhccceeccccc
Confidence 999999999999988763 3345889999999999999999999999999999999999999 5554 3577788999
Q ss_pred ceeEEEEecCCc-------hhHHHHHHHHHHC-CceeccC--CCCEEEEeccCcCCHHHHHHHHHHHHHHHHHHh
Q psy6548 174 GLLNAIVLDKSI-------LEVYDVCIKMKDA-GLVTKPI--SNNIIRLSPALNITEQELREGLDIIINTINTMA 238 (242)
Q Consensus 174 ~~~~~~~~~~~~-------~~~~~~~~~l~~~-gi~~~~~--~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~~ 238 (242)
|++|++++.++. ..+..+..+|++. +|+++.. +.+.+.|-|+.+.++|+.++++..|++++..+.
T Consensus 365 GLFiGIdLVkD~~tRtP~tk~A~~~v~rlke~y~VLlsaDGPh~NilKiKPPmCFneena~e~v~~ld~iLT~me 439 (452)
T KOG1403|consen 365 GLFIGIDLVKDRKTRTPDTKEAHWVVNRLKELYRVLLSADGPHRNILKIKPPMCFNEENADEFVLGLDEILTVME 439 (452)
T ss_pred eEEEeeeeecccccCCCcHHHHHHHHHHHHHhhhEEEecCCCCCceeecCCCcccChhhHHHHHHHHHHHHHHHH
Confidence 999999988764 3355567777764 6888754 467899999999999999999999999988654
No 90
>PLN03227 serine palmitoyltransferase-like protein; Provisional
Probab=99.95 E-value=8.6e-26 Score=192.03 Aligned_cols=226 Identities=15% Similarity=0.197 Sum_probs=168.4
Q ss_pred ccccCCCChhh-h----cCC----------CCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEecccc--c
Q psy6548 4 QFPVKSKQVPA-K----LKS----------NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQT--G 66 (242)
Q Consensus 4 ~~~~~~~d~~~-~----~~~----------~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~--~ 66 (242)
+..|+|||+++ + .+. ++++++|++|+++|++|.++| +++++++|++||+++|+||+|+ .
T Consensus 106 ~~~~~~~d~~~l~~~~~~i~~~~~a~~~~~~~~t~~vi~E~v~~~~G~i~~----l~~i~~l~~~~g~~livDe~~~~g~ 181 (392)
T PLN03227 106 VRWFRHNDMKDLRRVLEQVRAQDVALKRKPTDQRRFLVVEGLYKNTGTLAP----LKELVALKEEFHYRLILDESFSFGT 181 (392)
T ss_pred EEEeCCCCHHHHHHHHHHhhhhccccccccCCCcEEEEEcCCcCCCCcccC----HHHHHHHHHHcCCEEEEECcccccc
Confidence 45689998876 2 222 246899999999999998887 8999999999999999999996 2
Q ss_pred cCccCcccccccCCCCC----CEEEee--ccccCCccchheeEeChhhhhccCCCCCCCCCCCC--HHHHHHHHHHHHH-
Q psy6548 67 LGRTGKLLAIHYEDVRP----DIVILG--KALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGN--PLACKLAMTALDV- 137 (242)
Q Consensus 67 ~~~~g~~~~~~~~~~~~----~~~~~s--K~~~~g~~~~g~~~~~~~~~~~l~~~~~~~~~~~~--~~~~~~a~a~l~~- 137 (242)
+|++|. +..+++++.| |++++| |+++ ...|++++++++++.++...++.+++++ |+.+.++.++++.
T Consensus 182 ~g~~G~-g~~~~~g~~p~~~~Div~~slsk~~g---~~gg~v~~~~~~~~~~~~~~~~~~~~~~~~p~~~~aa~~al~~~ 257 (392)
T PLN03227 182 LGKSGR-GSLEHAGLKPMVHAEIVTFSLENAFG---SVGGMTVGSEEVVDHQRLSGSGYCFSASAPPFLAKADATATAGE 257 (392)
T ss_pred cCCCCC-cHHHHcCCCCCCCceEEEeechhhhh---ccCcEEecCHHHHHHHHHhCcCccccCCCCHHHHHHHHHHHHHH
Confidence 455555 4567788877 888855 6655 5567788898888777655566677765 6667777766654
Q ss_pred HHhccHHHHHHHHHHHHHHHHHhhcCCCCCCeE--------eeeceeEEEEecCCch--------hHHHHHHHHHHCCce
Q psy6548 138 ILEENMIENAYKMGEIFRSELRSRLSPDIVPVV--------RGKGLLNAIVLDKSIL--------EVYDVCIKMKDAGLV 201 (242)
Q Consensus 138 ~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~--------~~~~~~~~~~~~~~~~--------~~~~~~~~l~~~gi~ 201 (242)
.+.+++.++++++++++++.| +..+......+ ...++++.+.+.+... ....+.+.|+++|++
T Consensus 258 ~~~~~~~~~l~~~~~~l~~~L-~~~~~~~~~~~rg~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~ 336 (392)
T PLN03227 258 LAGPQLLNRLHDSIANLYSTL-TNSSHPYALKLRNRLVITSDPISPIIYLRLSDQEATRRTDETLILDQIAHHSLSEGVA 336 (392)
T ss_pred hcCHHHHHHHHHHHHHHHHHH-HhcCCccccccccccccCCCCCCCEEEEEeCCHHHhhhhhhhhHHHHHHHHHHHCCCE
Confidence 344568899999999999999 54322111111 2346788888865311 135899999999998
Q ss_pred eccC-----------CCCEEEEeccCcCCHHHHHHHHHHHHHHHHHHh
Q psy6548 202 TKPI-----------SNNIIRLSPALNITEQELREGLDIIINTINTMA 238 (242)
Q Consensus 202 ~~~~-----------~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~~ 238 (242)
+.+. .+..+|++++..+|+||++++++.|+++++++.
T Consensus 337 ~~~~~~~~~~~~~~~P~~~iR~~~~~~~t~eei~~~~~~l~~~~~~~~ 384 (392)
T PLN03227 337 VVSTGGHVKKFLQLVPPPCLRVVANASHTREDIDKLLTVLGEAVEAIL 384 (392)
T ss_pred EEecccccCCcCCCCCCceEEEEecCCCCHHHHHHHHHHHHHHHHHHH
Confidence 8531 356789999999999999999999999998764
No 91
>PRK09064 5-aminolevulinate synthase; Validated
Probab=99.95 E-value=5e-26 Score=194.99 Aligned_cols=222 Identities=15% Similarity=0.249 Sum_probs=167.1
Q ss_pred cccccCCCChhh--hcCC---CCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEecccc-c-cCccCcccc
Q psy6548 3 LQFPVKSKQVPA--KLKS---NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQT-G-LGRTGKLLA 75 (242)
Q Consensus 3 ~~~~~~~~d~~~--~~~~---~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~-~-~~~~g~~~~ 75 (242)
++..++|+|+++ +.+. ++++++|+++++++++|.+.| +++|.++|++||+++|+||+|+ | +|+.|.++
T Consensus 155 ~~~~~~~~d~~~le~~l~~~~~~~~~~v~~~~v~s~~G~~~~----l~~i~~l~~~~~~~livDEa~~~G~~g~~g~g~- 229 (407)
T PRK09064 155 EKHIFRHNDVAHLEELLAAADPDRPKLIAFESVYSMDGDIAP----IAEICDLADKYNALTYLDEVHAVGMYGPRGGGI- 229 (407)
T ss_pred cEEEECCCCHHHHHHHHHhccCCCCeEEEEeCCCCCCccccC----HHHHHHHHHHcCCEEEEECCCcccccCCCCCCh-
Confidence 345788998887 3332 257899999999999998887 9999999999999999999996 5 56666543
Q ss_pred cccCCC--CCCEE--EeeccccCCccchheeEeChhhhhccCCCCCC--CCCCCCHHHHHHHHHHHHHHHhc-cHHHHHH
Q psy6548 76 IHYEDV--RPDIV--ILGKALSGGLYPISAVLADDEVMGTLVPGTHG--STYGGNPLACKLAMTALDVILEE-NMIENAY 148 (242)
Q Consensus 76 ~~~~~~--~~~~~--~~sK~~~~g~~~~g~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~~a~a~l~~~~~~-~~~~~~~ 148 (242)
..+.++ .++++ +|||+|| ...||+++++++++.+...... .+.+.++.+++++.++++.++.. ...++++
T Consensus 230 ~~~~~~~~~~div~~t~sKa~g---~~GG~~~~~~~~~~~l~~~~~~~~~t~~~~~~~~~aa~~al~~~~~~~~~~~~~~ 306 (407)
T PRK09064 230 AERDGLMDRIDIIEGTLAKAFG---VMGGYIAGSAALVDAVRSYAPGFIFTTSLPPAIAAAALASIRHLKESNEERERHQ 306 (407)
T ss_pred HHhcCCCCCCeEEEEecchhhh---ccCceEecCHHHHHHHHHhCccccccCcCCHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 234443 45777 6999998 2236788898888877543222 24456777888888899888754 3457888
Q ss_pred HHHHHHHHHHHhhcCCCCCCeEeeeceeEEEEecCCchhHHHHHHHHHH-CCceeccC-------CCCEEEEeccCcCCH
Q psy6548 149 KMGEIFRSELRSRLSPDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKD-AGLVTKPI-------SNNIIRLSPALNITE 220 (242)
Q Consensus 149 ~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~gi~~~~~-------~~~~lR~~~~~~~t~ 220 (242)
++++++++.| +.++... ..+.+.++.+.++.. ....++.++|++ +||++.+. +.+++|+++++.+|+
T Consensus 307 ~~~~~l~~~L-~~~g~~~---~~~~~~iv~i~~~~~-~~~~~l~~~L~~~~gi~v~~~~~p~~~~~~~~lRis~~~~~t~ 381 (407)
T PRK09064 307 ERAAKLKAAL-DAAGIPV---MPNESHIVPVMVGDP-EKCKKASDMLLEEHGIYVQPINYPTVPRGTERLRITPTPFHTD 381 (407)
T ss_pred HHHHHHHHHH-HHcCCCC---CCCCCCEEEEEeCCH-HHHHHHHHHHHHhCCEEEeeECCCCCCCCCceEEEEeCCCCCH
Confidence 9999999999 6654221 123356777776553 467889999875 59999753 346899999999999
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy6548 221 QELREGLDIIINTINTM 237 (242)
Q Consensus 221 e~i~~~~~~l~~~l~~~ 237 (242)
+|++++++.|+++++++
T Consensus 382 edi~~l~~~l~~~~~~~ 398 (407)
T PRK09064 382 EMIDHLVEALVEVWARL 398 (407)
T ss_pred HHHHHHHHHHHHHHHHc
Confidence 99999999999998765
No 92
>TIGR01821 5aminolev_synth 5-aminolevulinic acid synthase. This model represents 5-aminolevulinic acid synthase, an enzyme for one of two routes to the heme precursor 5-aminolevulinate. The protein is a pyridoxal phosphate-dependent enzyme related to 2-amino-3-ketobutyrate CoA tranferase and 8-amino-7-oxononanoate synthase. This enzyme appears restricted to the alpha Proteobacteria and mitochondrial derivatives.
Probab=99.94 E-value=1.3e-25 Score=192.00 Aligned_cols=221 Identities=16% Similarity=0.253 Sum_probs=164.1
Q ss_pred ccccCCCChhh--hcCC---CCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEecccc-c-cCccCccccc
Q psy6548 4 QFPVKSKQVPA--KLKS---NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQT-G-LGRTGKLLAI 76 (242)
Q Consensus 4 ~~~~~~~d~~~--~~~~---~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~-~-~~~~g~~~~~ 76 (242)
+..|+++|+++ +.+. ++++++|++|+++|++|.+.| +++|+++|++||+++|+||+|+ | ++..|.+. .
T Consensus 155 ~~~~~~~d~~~l~~~l~~~~~~~~~~v~~e~~~~~~G~~~~----l~~i~~l~~~~~~~livDea~~~G~~g~~g~g~-~ 229 (402)
T TIGR01821 155 KFIFRHNDVAHLEKLLQSVDPNRPKIIAFESVYSMDGDIAP----IEEICDLADKYGALTYLDEVHAVGLYGPRGGGI-A 229 (402)
T ss_pred EEEECCCCHHHHHHHHHhccCCCCeEEEEcCCCCCCCCccC----HHHHHHHHHHcCCEEEEeCcccccccCCCCCcc-c
Confidence 45678888887 3332 246899999999999998877 9999999999999999999996 5 35555432 2
Q ss_pred ccCCC--CCCEE--EeeccccCCccchheeEeChhhhhccCCCCC--CCCCCCCHHHHHHHHHHHHHHHhc-cHHHHHHH
Q psy6548 77 HYEDV--RPDIV--ILGKALSGGLYPISAVLADDEVMGTLVPGTH--GSTYGGNPLACKLAMTALDVILEE-NMIENAYK 149 (242)
Q Consensus 77 ~~~~~--~~~~~--~~sK~~~~g~~~~g~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~a~a~l~~~~~~-~~~~~~~~ 149 (242)
...++ .+|++ +|||+++. ..||+++++++++.+..... .++.+.++.+++++.++++.+++. .+.+..++
T Consensus 230 ~~~~~~~~~div~~t~sKa~g~---~GG~i~~~~~~~~~l~~~~~~~~~t~~~~~~~~aaa~aaL~~~~~~~~~~~~~~~ 306 (402)
T TIGR01821 230 ERDGLMHRIDIIEGTLAKAFGV---VGGYIAASRKLIDAIRSYAPGFIFTTSLPPAIAAGATASIRHLKESQDLRRAHQE 306 (402)
T ss_pred hhccCCCCCeEEEEechhhhcc---CCceeecCHHHHHHHHHhCcCceecCcCCHHHHHHHHHHHHHhhcCHHHHHHHHH
Confidence 34443 35666 59999982 23678889888887764322 234457788889999999987654 35566778
Q ss_pred HHHHHHHHHHhhcCCCCCCeEeeeceeEEEEecCCchhHHHHHHHHHH-CCceeccC-------CCCEEEEeccCcCCHH
Q psy6548 150 MGEIFRSELRSRLSPDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKD-AGLVTKPI-------SNNIIRLSPALNITEQ 221 (242)
Q Consensus 150 ~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~gi~~~~~-------~~~~lR~~~~~~~t~e 221 (242)
+++++++.| ++++... ..+.+.++.+.++.. ..+.++.+.|++ +||++.+. +.+++|+++++.+|++
T Consensus 307 ~~~~l~~~L-~~~g~~~---~~~~~~i~~i~~~~~-~~a~~~~~~L~~~~Gi~v~~~~~p~~~~g~~~lRis~~~~~t~e 381 (402)
T TIGR01821 307 NVKRLKNLL-EALGIPV---IPNPSHIVPVIIGDA-ALCKKVSDLLLNKHGIYVQPINYPTVPRGTERLRITPTPAHTDK 381 (402)
T ss_pred HHHHHHHHH-HHcCCCc---CCCCCCEEEEEeCCH-HHHHHHHHHHHhcCCEEEEeECCCCCCCCCceEEEEeCCCCCHH
Confidence 899999999 6665221 123456777766543 356789999875 59998752 4478999999999999
Q ss_pred HHHHHHHHHHHHHHHH
Q psy6548 222 ELREGLDIIINTINTM 237 (242)
Q Consensus 222 ~i~~~~~~l~~~l~~~ 237 (242)
|++++++.|+++++++
T Consensus 382 di~~~~~~l~~~~~~~ 397 (402)
T TIGR01821 382 MIDDLVEALLLVWDRL 397 (402)
T ss_pred HHHHHHHHHHHHHHHc
Confidence 9999999999998764
No 93
>KOG1405|consensus
Probab=99.94 E-value=6.1e-26 Score=180.98 Aligned_cols=209 Identities=26% Similarity=0.364 Sum_probs=179.3
Q ss_pred CCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCC--CCCEEEeecccc-CC
Q psy6548 19 NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDV--RPDIVILGKALS-GG 95 (242)
Q Consensus 19 ~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~--~~~~~~~sK~~~-~g 95 (242)
+..+++|++||+|+.||+.-.+++|++.|+++|++||+.+|+||+|+|.|.+|..|+.++|++ .||+++|||-|. ||
T Consensus 269 ~~pVaaiIvEPIQsEGGDnhaSp~Ff~kLrdi~~Kh~v~fivDEVQTGgGaTGk~WaHehw~l~~PpD~vTFSKK~q~gG 348 (484)
T KOG1405|consen 269 KKPVAAIIVEPIQSEGGDNHASPDFFRKLRDITKKHGVAFIVDEVQTGGGATGKFWAHEHWNLDSPPDVVTFSKKFQTGG 348 (484)
T ss_pred CCCeEEEEeechhccCCCccCCHHHHHHHHHHHHhcCeEEEeeeeecCCCccCceeeehhcCCCCCccceehhhhhhcCc
Confidence 347999999999999999999999999999999999999999999999999999999999987 689999999888 55
Q ss_pred ccchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhhcCC---CCCCeEee
Q psy6548 96 LYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELRSRLSP---DIVPVVRG 172 (242)
Q Consensus 96 ~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l~~~l~~---~~~~~~~~ 172 (242)
| + -.++++- -.+..+..||.+.|.-...+.+.++.++.+++..+.++.++.+..+| .+|.. ......++
T Consensus 349 f-----f-h~~~frp-n~pYrifNTWmGdP~k~lll~~vv~~I~~~~Ll~n~~~vG~~l~~gL-~~Lq~~~p~~~~~~RG 420 (484)
T KOG1405|consen 349 F-----F-HDEEFRP-NEPYRIFNTWMGDPSKNLLLEEVVQEIKREDLLNNVAHVGKALLKGL-LELQAKYPGKINNLRG 420 (484)
T ss_pred c-----c-cCcccCC-CchHHHhhhhcCChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH-HHHHHhCchhhhcccc
Confidence 3 2 2322221 11233567888888877777788888888899999999999999999 77752 34556678
Q ss_pred eceeEEEEecCCchhHHHHHHHHHHCCceeccCCCCEEEEeccCcCCHHHHHHHHHHHHHHHHH
Q psy6548 173 KGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINT 236 (242)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~ 236 (242)
.|.++.++.+.. ...+.+...++-+|+.+..|+...+||.|++..++-..+-+++++++.++.
T Consensus 421 rGTF~a~d~ps~-~~Rdk~i~~~~~nGv~~GGCg~~siRfRPsLvf~~~Ha~i~l~~~~k~l~~ 483 (484)
T KOG1405|consen 421 RGTFIAWDCPSG-SIRDKLILIARLNGVNLGGCGDKSIRFRPSLVFRKHHADIFLDIFDKILAG 483 (484)
T ss_pred cceEEEEeCCCh-HHHHHHHHHHHHcCceecccccceeeeccceeehhhhHHHHHHHHHHHhcc
Confidence 999999999998 778889999999999999999999999999999999999999999998864
No 94
>PRK13393 5-aminolevulinate synthase; Provisional
Probab=99.94 E-value=3.6e-25 Score=189.57 Aligned_cols=221 Identities=14% Similarity=0.184 Sum_probs=165.9
Q ss_pred ccccCCCChhh--hcCC---CCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEecccc-cc-CccCccccc
Q psy6548 4 QFPVKSKQVPA--KLKS---NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQT-GL-GRTGKLLAI 76 (242)
Q Consensus 4 ~~~~~~~d~~~--~~~~---~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~-~~-~~~g~~~~~ 76 (242)
+..|||+|+++ +.+. ++++++|++|++++++|.+.| +++|.++|++||+++|+||+|+ |+ |+.|.++.
T Consensus 155 ~~~~~~~d~~~l~~~l~~~~~~~~~~v~~~~v~~~~G~~~~----l~~i~~l~~~~~~~livDea~~~g~~g~~G~g~~- 229 (406)
T PRK13393 155 KRIFRHNDPADLERKLSDLDPHRPKLVAFESVYSMDGDIAP----IAEICDVAEKHGAMTYLDEVHAVGLYGPRGGGIA- 229 (406)
T ss_pred EEEeCCCCHHHHHHHHHhccCCCCEEEEEcCCCCCCCchhC----HHHHHHHHHHcCCEEEEECCccccccCCCCCchh-
Confidence 55689999987 3332 347899999999999998887 9999999999999999999995 64 77765442
Q ss_pred ccCCCC--CCEE--EeeccccCCccchheeEeChhhhhccCCCCCC--CCCCCCHHHHHHHHHHHHHHHhcc-HHHHHHH
Q psy6548 77 HYEDVR--PDIV--ILGKALSGGLYPISAVLADDEVMGTLVPGTHG--STYGGNPLACKLAMTALDVILEEN-MIENAYK 149 (242)
Q Consensus 77 ~~~~~~--~~~~--~~sK~~~~g~~~~g~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~~a~a~l~~~~~~~-~~~~~~~ 149 (242)
...++. ++++ +|||+++. ..||+++++++++.+.+.... .+.+.++.+++++.++++.++... ...++++
T Consensus 230 ~~~~~~~~~~i~~~tlsKa~g~---~GG~~~~~~~~~~~l~~~~~~~~~t~~~~p~~~aa~~aaL~~~~~~~~~~~~~~~ 306 (406)
T PRK13393 230 EREGLADRLTIIEGTLAKAFGV---MGGYITGSAALCDFIRSFASGFIFTTSLPPAVAAGALASVRHLKASSAERERHQD 306 (406)
T ss_pred hhcCCCCCCeEEEEeCchhhcc---cCceeeCCHHHHHHHHHhCcCceecCccCHHHHHHHHHHHHHHhhCHHHHHHHHH
Confidence 444543 4666 69999992 236788888888877654433 244567788888889998776432 3455678
Q ss_pred HHHHHHHHHHhhcCCCCCCeEeeeceeEEEEecCCchhHHHHHHHHHH-CCceeccC-------CCCEEEEeccCcCCHH
Q psy6548 150 MGEIFRSELRSRLSPDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKD-AGLVTKPI-------SNNIIRLSPALNITEQ 221 (242)
Q Consensus 150 ~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~gi~~~~~-------~~~~lR~~~~~~~t~e 221 (242)
+++++++.| +.++... .++.+.++.+.+... ....++.++|++ +||++.+. +.+.+|+++++.+|++
T Consensus 307 ~~~~l~~~L-~~~g~~~---~~~~~~i~~v~~~~~-~~~~~l~~~L~~~~Gi~v~~~~~p~~p~g~~~iRis~~~~~t~e 381 (406)
T PRK13393 307 RVARLRARL-DKAGIPH---LPNPSHIVPVMVGDP-VLCKQISDELLDRYGIYVQPINYPTVPRGTERLRITPSPLHTDA 381 (406)
T ss_pred HHHHHHHHH-HHcCCCc---CCCCCCeEEEEeCCH-HHHHHHHHHHHHhCCEEEEeECCCCCCCCCceEEEEECCCCCHH
Confidence 888999999 6554221 234566777766443 457889999987 59999642 3478999999999999
Q ss_pred HHHHHHHHHHHHHHHH
Q psy6548 222 ELREGLDIIINTINTM 237 (242)
Q Consensus 222 ~i~~~~~~l~~~l~~~ 237 (242)
|++++++.|++++.++
T Consensus 382 did~l~~~l~~~~~~~ 397 (406)
T PRK13393 382 DIEHLVQALSEIWARL 397 (406)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 9999999999988764
No 95
>PRK13392 5-aminolevulinate synthase; Provisional
Probab=99.92 E-value=7.2e-24 Score=181.75 Aligned_cols=221 Identities=14% Similarity=0.225 Sum_probs=159.7
Q ss_pred ccccCCCChhh--hcC---CCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEecccc-c-cCccCccccc
Q psy6548 4 QFPVKSKQVPA--KLK---SNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQT-G-LGRTGKLLAI 76 (242)
Q Consensus 4 ~~~~~~~d~~~--~~~---~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~-~-~~~~g~~~~~ 76 (242)
+..++++|.++ +.+ .++++++|++++++|++|.+.+ +++|.++|++||+++|+||+|+ | ++..|.+. .
T Consensus 156 ~~~~~~~d~~~l~~~l~~~~~~~t~~v~i~~~~n~tG~~~~----l~~i~~l~~~~~~~livDea~~~g~~g~~g~g~-~ 230 (410)
T PRK13392 156 KQVFRHNDLADLEEQLASVDPDRPKLIAFESVYSMDGDIAP----IEAICDLADRYNALTYVDEVHAVGLYGARGGGI-A 230 (410)
T ss_pred EEEEeCCCHHHHHHHHHhccCCCCEEEEEeCCCCCCccccc----HHHHHHHHHHcCCEEEEECCccccCcCCCCCch-h
Confidence 44567887766 222 3468999999999999998876 9999999999999999999997 4 34554432 2
Q ss_pred ccCCC--CCCEE--EeeccccCCccchheeEeChhhhhccCCCCCC--CCCCCCHHHHHHHHHHHHHHHhc-cHHHHHHH
Q psy6548 77 HYEDV--RPDIV--ILGKALSGGLYPISAVLADDEVMGTLVPGTHG--STYGGNPLACKLAMTALDVILEE-NMIENAYK 149 (242)
Q Consensus 77 ~~~~~--~~~~~--~~sK~~~~g~~~~g~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~~a~a~l~~~~~~-~~~~~~~~ 149 (242)
...+. .+|++ ++||+|+. ..||+.+++++++.++..... .+.+.++++++++.++++.++.. ...+.+++
T Consensus 231 ~~~~~~~~~div~~tlsK~~g~---~GG~~~~~~~~~~~l~~~~~~~~~s~~~~~~~~~a~~aaL~~~~~~~~~~~~~~~ 307 (410)
T PRK13392 231 ERDGLMDRIDMIQGTLAKAFGC---LGGYIAASADLIDFVRSFAPGFIFTTALPPAVAAGATAAIRHLKTSQTERDAHQD 307 (410)
T ss_pred hhccCCCCCcEEEEEChHhhhc---ccchhhcCHHHHHHHHHhCcchhccCcCCHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 22333 34666 59999982 237788898888876654332 23345667788888889877543 34566788
Q ss_pred HHHHHHHHHHhhcCCCCCCeEeeeceeEEEEecCCchhHHHHHHHHH-HCCceeccC-------CCCEEEEeccCcCCHH
Q psy6548 150 MGEIFRSELRSRLSPDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMK-DAGLVTKPI-------SNNIIRLSPALNITEQ 221 (242)
Q Consensus 150 ~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~gi~~~~~-------~~~~lR~~~~~~~t~e 221 (242)
+++++++.| +.++... .++.+.++.+.++.. ....++.++|+ ++||++.+. +..++|++++..+|++
T Consensus 308 ~~~~l~~~L-~~~g~~~---~~~~~~~~~i~~~~~-~~~~~~~~~L~~~~GI~v~~~~~p~~~~~~~~lRis~~~~~t~e 382 (410)
T PRK13392 308 RVAALKAKL-NANGIPV---MPSPSHIVPVMVGDP-TLCKAISDRLMSEHGIYIQPINYPTVPRGTERLRITPTPLHDDE 382 (410)
T ss_pred HHHHHHHHH-HHcCCCC---CCCCCCEEEEEeCCH-HHHHHHHHHHHHhCCEEEeeeCCCCCCCCCceEEEEECCCCCHH
Confidence 888999999 6654221 123455555555543 35678999997 679999753 3468999999999999
Q ss_pred HHHHHHHHHHHHHHHH
Q psy6548 222 ELREGLDIIINTINTM 237 (242)
Q Consensus 222 ~i~~~~~~l~~~l~~~ 237 (242)
|++++++.|+++++++
T Consensus 383 did~l~~aL~~~~~~~ 398 (410)
T PRK13392 383 DIDALVAALVAIWDRL 398 (410)
T ss_pred HHHHHHHHHHHHHHHc
Confidence 9999999999987753
No 96
>PRK07682 hypothetical protein; Validated
Probab=99.92 E-value=3.9e-24 Score=181.62 Aligned_cols=220 Identities=14% Similarity=0.161 Sum_probs=156.6
Q ss_pred Chhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCccccc-ccCCCCCCE---
Q psy6548 11 QVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAI-HYEDVRPDI--- 85 (242)
Q Consensus 11 d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~-~~~~~~~~~--- 85 (242)
|+++ +...+++++++++++++|++|. +.+.+.+++|+++|++|++++|+||+|.++...+..... ...+....+
T Consensus 143 d~~~l~~~~~~~~~~v~~~~p~NPtG~-~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~ 221 (378)
T PRK07682 143 QPAQIEAAITAKTKAILLCSPNNPTGA-VLNKSELEEIAVIVEKHDLIVLSDEIYAELTYDEAYTSFASIKGMRERTILI 221 (378)
T ss_pred CHHHHHhhcCcccEEEEEECCCCCcCc-CcCHHHHHHHHHHHHHcCcEEEEehhhhhcccCCCCCChhhcccccCCEEEE
Confidence 3444 3333457888888888999995 667788999999999999999999999887544321111 111222233
Q ss_pred EEeecccc-CCccchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHH--hccHHHHHHHHHHHHHHHHHhhc
Q psy6548 86 VILGKALS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVIL--EENMIENAYKMGEIFRSELRSRL 162 (242)
Q Consensus 86 ~~~sK~~~-~g~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~--~~~~~~~~~~~~~~l~~~l~~~l 162 (242)
.+|||.|+ +| +|+||+++++++++.+........++.+++++.++.++++... .+...+.++++++.+.+.| +.+
T Consensus 222 ~S~SK~~~~~G-lR~G~~~~~~~~i~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L-~~~ 299 (378)
T PRK07682 222 SGFSKGFAMTG-WRLGFIAAPVYFSEAMLKIHQYSMMCAPTMAQFAALEALRAGNDDVIRMRDSYRKRRNFFVTSF-NEI 299 (378)
T ss_pred ecCcccccChh-hhhhhhhcCHHHHHHHHHHHHhhccCCCHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHH-HHC
Confidence 33899999 89 9999999999999888754333345667788877777775321 1234566778888888888 555
Q ss_pred CCCCCCeEeeeceeEEEEecCCchhHHHHHHHHH-HCCceeccC------CCCEEEEeccCcCCHHHHHHHHHHHHHHHH
Q psy6548 163 SPDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMK-DAGLVTKPI------SNNIIRLSPALNITEQELREGLDIIINTIN 235 (242)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~gi~~~~~------~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~ 235 (242)
+ +....+..++++|+.++....+..++++.|+ ++||.+.|+ +++++|+++. .+.+++++++++|++.++
T Consensus 300 ~--~~~~~p~g~~~~~~~~~~~~~~~~~~~~~ll~~~gv~v~pg~~f~~~~~~~iRis~~--~~~~~l~~~l~~l~~~l~ 375 (378)
T PRK07682 300 G--LTCHVPGGAFYAFPSISSTGLSSEEFAEQLLLEEKVAVVPGSVFGESGEGFIRCSYA--TSLEQLQEAMKRMKRFVE 375 (378)
T ss_pred C--CccCCCCeeEEEEEeccCCCCCHHHHHHHHHHhCCEEEcCchhhCcCCCCeEEEEeC--CCHHHHHHHHHHHHHHHh
Confidence 3 2222344567888877542246788998876 679999875 2589999954 578999999999999887
Q ss_pred HH
Q psy6548 236 TM 237 (242)
Q Consensus 236 ~~ 237 (242)
++
T Consensus 376 ~~ 377 (378)
T PRK07682 376 NK 377 (378)
T ss_pred hc
Confidence 54
No 97
>COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]
Probab=99.92 E-value=2.8e-24 Score=173.84 Aligned_cols=218 Identities=15% Similarity=0.154 Sum_probs=162.5
Q ss_pred hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccC-cccccccC--CCCCCEEE---e
Q psy6548 15 KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTG-KLLAIHYE--DVRPDIVI---L 88 (242)
Q Consensus 15 ~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g-~~~~~~~~--~~~~~~~~---~ 88 (242)
+.+.+.++++++++++|||+| +++++++|.+|.++|.+||+.+|+||+|+++...| ....+... +.....++ -
T Consensus 152 ~~~~~~~vkl~iLCnPHNP~G-rvwt~eeL~~i~elc~kh~v~VISDEIHaDlv~~g~~h~~~a~ls~~~a~~~it~~sa 230 (388)
T COG1168 152 KAFVDERVKLFILCNPHNPTG-RVWTKEELRKIAELCLRHGVRVISDEIHADLVLGGHKHIPFASLSERFADNSITLTSA 230 (388)
T ss_pred HHHhcCCccEEEEeCCCCCCC-ccccHHHHHHHHHHHHHcCCEEEeecccccccccCCCccchhhcChhhhcceEEEeec
Confidence 677788899999999999999 89999999999999999999999999999975555 22221111 11122222 5
Q ss_pred ecccc-CCccchheeEeC-hhhhhccCC-CCCCCCCCCCHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHHhhcC
Q psy6548 89 GKALS-GGLYPISAVLAD-DEVMGTLVP-GTHGSTYGGNPLACKLAMTALDVILE--ENMIENAYKMGEIFRSELRSRLS 163 (242)
Q Consensus 89 sK~~~-~g~~~~g~~~~~-~~~~~~l~~-~~~~~~~~~~~~~~~~a~a~l~~~~~--~~~~~~~~~~~~~l~~~l~~~l~ 163 (242)
||+|. +| +.+++++.+ +++..++.+ .........|.+++.|..++++..+. +++.+.++.+++++.+.+.+.++
T Consensus 231 SKtFNlaG-L~~a~~Ii~n~~lr~~~~~~l~~~~~~~~n~lg~~A~~aAY~~G~~WLd~L~~yl~~N~~~~~~~l~~~~P 309 (388)
T COG1168 231 SKTFNLAG-LKCAYIIISNRELRAKFLKRLKRNGLHGPSALGIIATEAAYNQGEPWLDELLEYLKDNRDYVADFLNKHLP 309 (388)
T ss_pred cccccchh-hhheeEEecCHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 79999 89 899987755 555344332 22334445788999999999987765 67899999999999999966665
Q ss_pred CCCCCeEeeeceeEEEEecCCchhHHHHHHHHHHC-Ccee------ccCCCCEEEEeccCcCCHHHHHHHHHHHHHHHHH
Q psy6548 164 PDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDA-GLVT------KPISNNIIRLSPALNITEQELREGLDIIINTINT 236 (242)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-gi~~------~~~~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~ 236 (242)
..... .+..++..|+++..-+.+..+..+.|+++ +|.+ .+.+.+++|++ ..++.+-+++++++|..+++.
T Consensus 310 ~v~v~-~p~gTYL~WLD~r~l~l~d~~l~~~ll~~akVal~~G~~FG~~g~gf~RlN--~acpr~~L~eal~ri~~al~~ 386 (388)
T COG1168 310 GVKVT-EPQGTYLAWLDCRELGLDDSELAEFLLEEAKVALSPGSTFGEEGSGFVRLN--FACPRAILEEALERLKRALKK 386 (388)
T ss_pred CcEEe-cCCCceeeeeeccccCCChHHHHHHHHHhhcEeccCCCccCcCCCceEEEe--cCCCHHHHHHHHHHHHHHHhc
Confidence 43233 34455788999888655556777777754 4554 44578999999 889999999999999988875
Q ss_pred H
Q psy6548 237 M 237 (242)
Q Consensus 237 ~ 237 (242)
.
T Consensus 387 ~ 387 (388)
T COG1168 387 R 387 (388)
T ss_pred c
Confidence 3
No 98
>PRK07179 hypothetical protein; Provisional
Probab=99.92 E-value=1.5e-23 Score=179.70 Aligned_cols=220 Identities=16% Similarity=0.222 Sum_probs=160.2
Q ss_pred ccccCCCChhh--hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccc--cCccCcccccccC
Q psy6548 4 QFPVKSKQVPA--KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTG--LGRTGKLLAIHYE 79 (242)
Q Consensus 4 ~~~~~~~d~~~--~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~--~~~~g~~~~~~~~ 79 (242)
+..++++|+++ +.+.+.++++|++++++|++|.+.| +++|+++|++||+++|+||+|+. ++..|.++ ...+
T Consensus 162 ~~~~~~~d~~~l~~~l~~~~~~lV~v~~v~n~tG~i~p----l~~I~~l~~~~~~~livDea~~~g~~g~~g~g~-~~~~ 236 (407)
T PRK07179 162 AHPFRHNDVDHLRRQIERHGPGIIVVDSVYSTTGTIAP----LADIVDIAEEFGCVLVVDESHSLGTHGPQGAGL-VAEL 236 (407)
T ss_pred EEEecCCCHHHHHHHHHhcCCeEEEECCCCCCCCcccc----HHHHHHHHHHcCCEEEEECcccccCcCCCCCch-HHhc
Confidence 45678899998 4444446889999999999998887 89999999999999999999963 33344332 2344
Q ss_pred CCC--CCEEE--eeccccCCccchheeEeChhhhhccCCCCCCCCC--CCCHHHHHHHHHHHHHHHhc-cHHHHHHHHHH
Q psy6548 80 DVR--PDIVI--LGKALSGGLYPISAVLADDEVMGTLVPGTHGSTY--GGNPLACKLAMTALDVILEE-NMIENAYKMGE 152 (242)
Q Consensus 80 ~~~--~~~~~--~sK~~~~g~~~~g~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~a~a~l~~~~~~-~~~~~~~~~~~ 152 (242)
++. +|+++ ++|+++ .++|++++++++++.+........+ +.++..++++.++++.+... +..++++++++
T Consensus 237 ~~~~~vdi~~~S~sK~~g---~~~G~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~aa~~aal~~~~~~~~~~~~l~~~~~ 313 (407)
T PRK07179 237 GLTSRVHFITASLAKAFA---GRAGIITCPRELAEYVPFVSYPAIFSSTLLPHEIAGLEATLEVIESADDRRARLHANAR 313 (407)
T ss_pred CCCCCCCEEEeechHhhh---ccCeEEEeCHHHHHHHHHhCcCeeeCCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 542 36655 789997 4589999998887766532111112 22344455556677776553 46788999999
Q ss_pred HHHHHHHhhcCCCCCCeEeeeceeEEEEecCCchhHHHHHHHHHHCCceec----cC---CCCEEEEeccCcCCHHHHHH
Q psy6548 153 IFRSELRSRLSPDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTK----PI---SNNIIRLSPALNITEQELRE 225 (242)
Q Consensus 153 ~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~----~~---~~~~lR~~~~~~~t~e~i~~ 225 (242)
++++.| +.++..+ .+.+.++++.++.. .....+.+.|.++||.+. |. +.+.+|++++..+|++|+++
T Consensus 314 ~l~~~L-~~~g~~v----~~~~~i~~l~~~~~-~~~~~~~~~L~~~GI~~~~~~~p~~~~~~~~lRis~~~~~t~edi~~ 387 (407)
T PRK07179 314 FLREGL-SELGYNI----RSESQIIALETGSE-RNTEVLRDALEERNVFGAVFCAPATPKNRNLIRLSLNADLTASDLDR 387 (407)
T ss_pred HHHHHH-HHcCCCC----CCCCCEEEEEeCCH-HHHHHHHHHHHHCCceEeeecCCCCCCCCceEEEEECCCCCHHHHHH
Confidence 999999 6664211 23467788877653 456788899999999743 32 35799999999999999999
Q ss_pred HHHHHHHHHHHH
Q psy6548 226 GLDIIINTINTM 237 (242)
Q Consensus 226 ~~~~l~~~l~~~ 237 (242)
+++.|++++++.
T Consensus 388 ~~~~l~~~~~~~ 399 (407)
T PRK07179 388 VLEVCREARDEV 399 (407)
T ss_pred HHHHHHHHHHhh
Confidence 999999988764
No 99
>PRK07505 hypothetical protein; Provisional
Probab=99.92 E-value=6.7e-24 Score=181.49 Aligned_cols=217 Identities=15% Similarity=0.225 Sum_probs=149.5
Q ss_pred cccccCCCChhh--hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccc--cccCccCccccccc
Q psy6548 3 LQFPVKSKQVPA--KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQ--TGLGRTGKLLAIHY 78 (242)
Q Consensus 3 ~~~~~~~~d~~~--~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~--~~~~~~g~~~~~~~ 78 (242)
++..+||+|+++ +.+.++...+++++|++++ |.+.+ +++|.++|++||+++|+||+| .+++++|.++..+.
T Consensus 160 ~v~~~~~~d~~~l~~~~~~~~~~~vl~~p~~~~-G~~~~----~~~i~~l~~~~~~~li~DEa~~~~~~g~~g~~~~~~~ 234 (402)
T PRK07505 160 EVETIDHNDLDALEDICKTNKTVAYVADGVYSM-GGIAP----VKELLRLQEKYGLFLYIDDAHGLSIYGKNGEGYVRSE 234 (402)
T ss_pred eEEEeCCCCHHHHHHHHhcCCCEEEEEeccccc-CCcCC----HHHHHHHHHHcCCEEEEECcccccCcCCCCCchHHHH
Confidence 467789999999 4455555778888887655 65665 899999999999999999999 45777776555556
Q ss_pred CCC-CCCEE----EeeccccCCccchheeE-eChhhhhccCCCCCCCCCCCC--HHHHHHHHHHHHHHHhccHH---HHH
Q psy6548 79 EDV-RPDIV----ILGKALSGGLYPISAVL-ADDEVMGTLVPGTHGSTYGGN--PLACKLAMTALDVILEENMI---ENA 147 (242)
Q Consensus 79 ~~~-~~~~~----~~sK~~~~g~~~~g~~~-~~~~~~~~l~~~~~~~~~~~~--~~~~~~a~a~l~~~~~~~~~---~~~ 147 (242)
++. .+|.+ ++||+++++ .|+++ .++++++.+......++++++ +++++++.++++....+.+. +.+
T Consensus 235 ~~~~~~d~~i~~~s~sK~~~~~---Gg~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~aa~~a~l~~~~~~~~~~~~~~l 311 (402)
T PRK07505 235 LDYRLNERTIIAASLGKAFGAS---GGVIMLGDAEQIELILRYAGPLAFSQSLNVAALGAILASAEIHLSEELDQLQQKL 311 (402)
T ss_pred cCCCCCCCeEEEEechhhhhcc---CeEEEeCCHHHHHHHHHhCCCceeCCCCCHHHHHHHHHHHHHHhccCcHHHHHHH
Confidence 665 56633 489999843 36665 467888877765566666544 57888888888866554433 223
Q ss_pred HHHHHHHHHHHHhhcCCCCCCeEeeeceeE-EEEecCCchhHHHHHHHHHHCCceeccC-------CCCEEEEeccCcCC
Q psy6548 148 YKMGEIFRSELRSRLSPDIVPVVRGKGLLN-AIVLDKSILEVYDVCIKMKDAGLVTKPI-------SNNIIRLSPALNIT 219 (242)
Q Consensus 148 ~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~gi~~~~~-------~~~~lR~~~~~~~t 219 (242)
+++.+.+...+ . . ...+.+.++ ++.+... ....++.+.|+++||++++. +.+.+|+++++.+|
T Consensus 312 ~~~~~~~~~~~-~--~-----~~~g~~~~i~~~~~~~~-~~~~~~~~~l~~~Gi~v~~~~~p~~~~~~~~lRi~~~~~~t 382 (402)
T PRK07505 312 QNNIALFDSLI-P--T-----EQSGSFLPIRLIYIGDE-DTAIKAAKQLLDRGFYTSPVFFPVVAKGRAGLRIMFRASHT 382 (402)
T ss_pred HHHHHHHHHHH-H--h-----cCCCCCCCEEEEEeCCH-HHHHHHHHHHHHCCCeEeeecCCCCCCCCceEEEecCccCC
Confidence 23222222211 1 1 112233332 3333332 35788999999999999764 23689999999999
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy6548 220 EQELREGLDIIINTINT 236 (242)
Q Consensus 220 ~e~i~~~~~~l~~~l~~ 236 (242)
+||++++++.|++++.+
T Consensus 383 ~eei~~~~~~l~~~l~~ 399 (402)
T PRK07505 383 NDEIKRLCSLLKEILDE 399 (402)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 99999999999998764
No 100
>PRK06225 aspartate aminotransferase; Provisional
Probab=99.91 E-value=2.3e-23 Score=177.02 Aligned_cols=222 Identities=15% Similarity=0.211 Sum_probs=153.3
Q ss_pred Chhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccC-CCCCCEEEe
Q psy6548 11 QVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYE-DVRPDIVIL 88 (242)
Q Consensus 11 d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~-~~~~~~~~~ 88 (242)
|++. +...+++++++++.+++|++|.+ .+.+.+++|+++|++||+++|+||+|.+|.. +........ .....+.+|
T Consensus 146 d~~~l~~~~~~~~~~v~l~~p~NptG~~-~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~-~~~~~~~~~~~~~i~~~s~ 223 (380)
T PRK06225 146 TPELVKENMDENTRLIYLIDPLNPLGSS-YTEEEIKEFAEIARDNDAFLLHDCTYRDFAR-EHTLAAEYAPEHTVTSYSF 223 (380)
T ss_pred CHHHHHhhcCCCceEEEEeCCCCCCCcC-CCHHHHHHHHHHHHHCCcEEEEehhHHHHhc-cCCchhhcCCCCEEEEeec
Confidence 3444 33335578888877778899854 4677899999999999999999999987632 211111110 111224458
Q ss_pred ecccc-CCccchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHHhhcCCC
Q psy6548 89 GKALS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILE--ENMIENAYKMGEIFRSELRSRLSPD 165 (242)
Q Consensus 89 sK~~~-~g~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~--~~~~~~~~~~~~~l~~~l~~~l~~~ 165 (242)
||.++ +| +|+||+++++++++.+.+.. ..+++.+.+++.++.++++.... +...+..+++.+.+++.| +++...
T Consensus 224 SK~~g~~G-~RiG~i~~~~~l~~~~~~~~-~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~l~~~L-~~~~~~ 300 (380)
T PRK06225 224 SKIFGMAG-LRIGAVVATPDLIEVVKSIV-INDLGTNVIAQEAAIAGLKVKDEWIDRIRRTTFKNQKLIKEAV-DEIEGV 300 (380)
T ss_pred hhhcCCcc-ceeEEEecCHHHHHHHHHHH-hcccCCCHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHH-HhCcCC
Confidence 99998 89 99999999999988876532 23556677887777666653211 223344455566667777 554321
Q ss_pred CCCeEeeeceeEEEEecCCchhHHHHHHHHHHCCceeccC-------CCCEEEEeccCcCCHHHHHHHHHHHHHHHHHHh
Q psy6548 166 IVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPI-------SNNIIRLSPALNITEQELREGLDIIINTINTMA 238 (242)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~-------~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~~ 238 (242)
.....+..|.++|+.++....+..++.+.|.++||.+.++ +.+++|+++ ..++|++++++++|+++++.++
T Consensus 301 ~~~~~~~~g~~~~~~~~~~~~~~~~l~~~l~~~gi~v~~g~~~~~~~~~~~iR~s~--~~~~e~l~~~~~~l~~~~~~~~ 378 (380)
T PRK06225 301 FLPVYPSHGNMMVIDISEAGIDPEDLVEYLLERKIFVRQGTYTSKRFGDRYIRVSF--SIPREQVEVFCEEFPDVVETLR 378 (380)
T ss_pred ccccCCCCCeEEEEEcccccCCHHHHHHHHHHCCEEEcCCcccCcCCCCceEEEEe--CCCHHHHHHHHHHHHHHHHHhh
Confidence 1222344577888888653246788999999999999875 346899994 4589999999999999999876
Q ss_pred h
Q psy6548 239 A 239 (242)
Q Consensus 239 ~ 239 (242)
+
T Consensus 379 ~ 379 (380)
T PRK06225 379 T 379 (380)
T ss_pred c
Confidence 5
No 101
>PRK07324 transaminase; Validated
Probab=99.91 E-value=2.3e-23 Score=176.39 Aligned_cols=219 Identities=17% Similarity=0.207 Sum_probs=153.3
Q ss_pred Chhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccc-cccCCCCCCEEEe
Q psy6548 11 QVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLA-IHYEDVRPDIVIL 88 (242)
Q Consensus 11 d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~-~~~~~~~~~~~~~ 88 (242)
|+++ +...+++++++++++++|++|. +.+++.+++|+++|++||+++|+||+|.++...+.... ....+....+-+|
T Consensus 142 d~~~l~~~~~~~~kli~i~~p~NPtG~-~~~~~~l~~i~~~a~~~~~~ii~De~y~~l~~~~~~~s~~~~~~~~I~~~s~ 220 (373)
T PRK07324 142 DLDELRRLVRPNTKLICINNANNPTGA-LMDRAYLEEIVEIARSVDAYVLSDEVYRPLDEDGSTPSIADLYEKGISTNSM 220 (373)
T ss_pred CHHHHHHhCCCCCcEEEEeCCCCCCCC-CCCHHHHHHHHHHHHHCCCEEEEEccccccccCCCCCChhhccCCEEEEecc
Confidence 4455 4444567899999999999995 55678899999999999999999999988754332111 1111111112339
Q ss_pred ecccc-CCccchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHHhhcCCC
Q psy6548 89 GKALS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILE--ENMIENAYKMGEIFRSELRSRLSPD 165 (242)
Q Consensus 89 sK~~~-~g~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~--~~~~~~~~~~~~~l~~~l~~~l~~~ 165 (242)
||.++ +| +|+||+++++++++.+.......+++.+.+++.++..+++..+. +...+.++++++.+.+.| +..+ .
T Consensus 221 SK~~~~~G-~RiG~i~~~~~li~~~~~~~~~~~~~~~~~~q~~a~~~l~~~~~~l~~~~~~~~~~~~~l~~~l-~~~~-~ 297 (373)
T PRK07324 221 SKTYSLPG-IRVGWIAANEEVIDILRKYRDYTMICAGVFDDMLASLALEHRDAILERNRKIVRTNLAILDEWV-AKEP-R 297 (373)
T ss_pred hhhcCCcc-ceeEEEecCHHHHHHHHHHhCcEEecCChHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHH-hcCC-C
Confidence 99999 89 99999999999988887755555666777887777766653211 233455566666676777 4432 2
Q ss_pred CCCeEeeeceeEEEEecCCchhHHHHHHHHH-HCCceeccCC----CCEEEEeccCcCCHHHHHHHHHHHHHHHHH
Q psy6548 166 IVPVVRGKGLLNAIVLDKSILEVYDVCIKMK-DAGLVTKPIS----NNIIRLSPALNITEQELREGLDIIINTINT 236 (242)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~gi~~~~~~----~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~ 236 (242)
+....+..|++.|+.++.. .+..+++++|+ ++||.+.|+. ++++|++ +..+++.+++++++|++.+++
T Consensus 298 ~~~~~p~gg~~~~i~~~~~-~~~~~~~~~ll~~~gv~v~pg~~F~~~~~iRis--~~~~~~~l~~~l~rl~~~l~~ 370 (373)
T PRK07324 298 VSYVKPKAVSTSFVKLDVD-MPSEDFCLKLLKETGVLLVPGNRFDLEGHVRIG--YCCDTETLKKGLKKLSEFLRE 370 (373)
T ss_pred ceEECCCceEEEEEEeCCC-CCHHHHHHHHHHhcCEEEECccccCCCCeEEEE--ecCCHHHHHHHHHHHHHHHHh
Confidence 2222233456667766654 46788999876 6799999873 5799999 456789999999999998875
No 102
>PLN00175 aminotransferase family protein; Provisional
Probab=99.91 E-value=2.7e-23 Score=178.09 Aligned_cols=214 Identities=17% Similarity=0.213 Sum_probs=154.6
Q ss_pred hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCccccc-ccCCCCCCEEE---eec
Q psy6548 15 KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAI-HYEDVRPDIVI---LGK 90 (242)
Q Consensus 15 ~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~-~~~~~~~~~~~---~sK 90 (242)
+...+.+++++++.+++|++|. +.+++.+++|+++|++|++++|+||+|.++...+..... ...+....+++ |||
T Consensus 181 ~~~~~~~~k~i~i~~p~NPtG~-~~s~~~l~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~s~~~~~~~~~~vi~i~SfSK 259 (413)
T PLN00175 181 KAAFTSKTRAILINTPHNPTGK-MFTREELELIASLCKENDVLAFTDEVYDKLAFEGDHISMASLPGMYERTVTMNSLGK 259 (413)
T ss_pred HHhcCcCceEEEecCCCCCCCc-CCCHHHHHHHHHHHHHcCcEEEEecccCccccCCcccChhhCCCCcCcEEEEecchh
Confidence 3333457899999999999995 557889999999999999999999999876433322111 11122223333 899
Q ss_pred ccc-CCccchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHHhhcCCCCC
Q psy6548 91 ALS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILE--ENMIENAYKMGEIFRSELRSRLSPDIV 167 (242)
Q Consensus 91 ~~~-~g~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~--~~~~~~~~~~~~~l~~~l~~~l~~~~~ 167 (242)
.|+ +| +|+||+++++++++.+.......+++.+.+.+.++.++++..+. ++..+.++++++.+.+.| +..+ +.
T Consensus 260 ~~~~~G-~RiG~~v~~~~l~~~l~~~~~~~~~~~s~~~Q~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L-~~~g--~~ 335 (413)
T PLN00175 260 TFSLTG-WKIGWAIAPPHLTWGVRQAHSFLTFATATPMQWAAVAALRAPESYYEELKRDYSAKKDILVEGL-KEVG--FK 335 (413)
T ss_pred hccCcc-hheeeeEeCHHHHHHHHHHHhhccCCCCHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHH-HHCC--Ce
Confidence 999 89 99999999999988887644445677888888887777753211 345667778888888888 5553 22
Q ss_pred CeEeeeceeEEEEecCCch-hHHHHHHHHH-HCCceeccC---------CCCEEEEeccCcCCHHHHHHHHHHHHHHHH
Q psy6548 168 PVVRGKGLLNAIVLDKSIL-EVYDVCIKMK-DAGLVTKPI---------SNNIIRLSPALNITEQELREGLDIIINTIN 235 (242)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~-~~gi~~~~~---------~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~ 235 (242)
...+..++++|+++...+. +..++++.|+ ++||.+.|+ +.+++|+++. .+++++++++++|.+.++
T Consensus 336 ~~~p~g~~f~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~F~~~~~~~~~~iRls~~--~~~e~l~~~~~rL~~~~~ 412 (413)
T PLN00175 336 VYPSSGTYFVMVDHTPFGFENDIAFCEYLIEEVGVAAIPPSVFYLNPEDGKNLVRFAFC--KDEETLRAAVERMKTKLK 412 (413)
T ss_pred ecCCCeeEEEEEeccccCCCCHHHHHHHHHHhCCEEEeCchHhCCCCCCCCCEEEEEEc--CCHHHHHHHHHHHHHHHh
Confidence 2234457889998753212 4678989887 569999875 1468999954 589999999999998775
No 103
>PRK07681 aspartate aminotransferase; Provisional
Probab=99.91 E-value=3.4e-23 Score=177.01 Aligned_cols=206 Identities=16% Similarity=0.159 Sum_probs=149.5
Q ss_pred CCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCccc-c-cccCCCCCC---EEEeecccc
Q psy6548 19 NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLL-A-IHYEDVRPD---IVILGKALS 93 (242)
Q Consensus 19 ~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~-~-~~~~~~~~~---~~~~sK~~~ 93 (242)
.+++++++++.++|++|. +.+++.+++|+++|++||++||+||+|.+|...+... . ....+.... +-+|||.++
T Consensus 164 ~~~~k~v~l~~P~NPTG~-~~s~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~ 242 (399)
T PRK07681 164 ADKAKMMILNFPGNPVPA-MAHEDFFKEVIAFAKKHNIIVVHDFAYAEFYFDGNKPISFLSVPGAKEVGVEINSLSKSYS 242 (399)
T ss_pred cccceEEEEeCCCCCcCc-CCCHHHHHHHHHHHHHcCeEEEEeccchhheeCCCCCCChhhCCCCcccEEEEeecccccC
Confidence 457889999988999995 5567889999999999999999999998764333211 1 111111112 233899998
Q ss_pred -CCccchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHHhhcCCCCCCeE
Q psy6548 94 -GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILE--ENMIENAYKMGEIFRSELRSRLSPDIVPVV 170 (242)
Q Consensus 94 -~g~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~--~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~ 170 (242)
+| +|+||+++++++++.+........++.+.+++.++.++++.... +...+.++++++.+.+.| +..+ +....
T Consensus 243 ~~G-lRiG~~i~~~~l~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L-~~~g--~~~~~ 318 (399)
T PRK07681 243 LAG-SRIGYMIGNEEIVRALTQFKSNTDYGVFLPIQKAACAALRNGAAFCEKNRGIYQERRDTLVDGF-RTFG--WNVDK 318 (399)
T ss_pred Ccc-ceeEEEecCHHHHHHHHHHHhhcccCCCHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHH-HHCC--CcccC
Confidence 99 99999999999988887543334566777888777777753211 233456677777788888 5543 22223
Q ss_pred eeeceeEEEEecCCchhHHHHHHHHHH-CCceeccC------CCCEEEEeccCcCCHHHHHHHHHHHHH
Q psy6548 171 RGKGLLNAIVLDKSILEVYDVCIKMKD-AGLVTKPI------SNNIIRLSPALNITEQELREGLDIIIN 232 (242)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~l~~-~gi~~~~~------~~~~lR~~~~~~~t~e~i~~~~~~l~~ 232 (242)
+..|+++|++++.. .+..++++.|.+ +||.+.|+ +++++|+++. .+++++++++++|++
T Consensus 319 p~~g~f~~~~l~~~-~~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRis~~--~~~~~~~~~l~~l~~ 384 (399)
T PRK07681 319 PAGSMFVWAEIPKG-WTSLSFAYALMDRANVVVTPGHAFGPHGEGFVRIALV--QDEEVLQQAVENIRN 384 (399)
T ss_pred CCeeeEEEEECCCC-CCHHHHHHHHHHhCCEEEeCChhhCcCCCCeEEEEec--CCHHHHHHHHHHHHH
Confidence 45689999998765 567889999987 89999875 2468999954 678999999999987
No 104
>PRK06108 aspartate aminotransferase; Provisional
Probab=99.91 E-value=3.3e-23 Score=176.14 Aligned_cols=217 Identities=15% Similarity=0.173 Sum_probs=153.3
Q ss_pred hhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCcc-Cccc-c-cccCCCCCCEE-
Q psy6548 12 VPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRT-GKLL-A-IHYEDVRPDIV- 86 (242)
Q Consensus 12 ~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~-g~~~-~-~~~~~~~~~~~- 86 (242)
+++ +...+++++++++++++|++|.+ .+.+.+++|+++|++||+++|+||+|.++... +... . .........++
T Consensus 148 ~~~l~~~~~~~~~~i~l~~p~NPtG~~-~~~~~~~~l~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~ 226 (382)
T PRK06108 148 LDRLLAAITPRTRALFINSPNNPTGWT-ASRDDLRAILAHCRRHGLWIVADEVYERLYYAPGGRAPSFLDIAEPDDRIIF 226 (382)
T ss_pred HHHHHHhcCccceEEEEECCCCCCCcc-cCHHHHHHHHHHHHHCCcEEEEehhhhhhccCCCCCCCCHhhcCCCcCCEEE
Confidence 444 33335578888888899999955 57788999999999999999999999876432 1111 1 11111122333
Q ss_pred --Eeecccc-CCccchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHHhh
Q psy6548 87 --ILGKALS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILE--ENMIENAYKMGEIFRSELRSR 161 (242)
Q Consensus 87 --~~sK~~~-~g~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~--~~~~~~~~~~~~~l~~~l~~~ 161 (242)
+|||.++ +| +|+||+++++++++.+.......+.+.+++.+.++.++++.... ++..++++++++.+++.| +.
T Consensus 227 ~~S~SK~~g~~G-~RiG~~~~~~~~~~~~~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L-~~ 304 (382)
T PRK06108 227 VNSFSKNWAMTG-WRLGWLVAPPALGQVLEKLIEYNTSCVAQFVQRAAVAALDEGEDFVAELVARLRRSRDHLVDAL-RA 304 (382)
T ss_pred EeechhhccCcc-cceeeeeCCHHHHHHHHHHHHhcccCCChHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHH-Hh
Confidence 3899998 88 99999999998888776543333445677787777777754221 345667777888888888 55
Q ss_pred cCCCCCCeEeeeceeEEEEecCCchhHHHHHHHHH-HCCceeccC------CCCEEEEeccCcCCHHHHHHHHHHHHHHH
Q psy6548 162 LSPDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMK-DAGLVTKPI------SNNIIRLSPALNITEQELREGLDIIINTI 234 (242)
Q Consensus 162 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~gi~~~~~------~~~~lR~~~~~~~t~e~i~~~~~~l~~~l 234 (242)
++. +....+..|+++|+.++.. .+..+++++|+ ++||.+.|+ +.+++|++++. +++++++++++|++.+
T Consensus 305 ~~~-~~~~~p~~g~~~~~~l~~~-~~~~~~~~~ll~~~gV~v~pg~~f~~~~~~~~Ris~~~--~~~~l~~~l~~l~~~l 380 (382)
T PRK06108 305 LPG-VEVAKPDGAMYAFFRIPGV-TDSLALAKRLVDEAGLGLAPGTAFGPGGEGFLRWCFAR--DPARLDEAVERLRRFL 380 (382)
T ss_pred CCC-CcccCCCeeEEEEEeCCCC-CCHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEecC--CHHHHHHHHHHHHHHH
Confidence 532 2222234577888888764 46778999886 579999775 35799999765 8999999999998876
Q ss_pred H
Q psy6548 235 N 235 (242)
Q Consensus 235 ~ 235 (242)
+
T Consensus 381 ~ 381 (382)
T PRK06108 381 A 381 (382)
T ss_pred h
Confidence 4
No 105
>PRK06425 histidinol-phosphate aminotransferase; Validated
Probab=99.91 E-value=2.5e-23 Score=173.68 Aligned_cols=216 Identities=11% Similarity=0.113 Sum_probs=146.1
Q ss_pred ccccCCCChhh--hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCC
Q psy6548 4 QFPVKSKQVPA--KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDV 81 (242)
Q Consensus 4 ~~~~~~~d~~~--~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~ 81 (242)
+..+|.++.+. +.+...+++++++++++||+|.+ .+.+.+++|+++|++||++||+||+|.+|...+........+.
T Consensus 103 v~~vp~~~~~~~~~~l~~~~~k~v~l~nP~NPTG~~-~s~~~~~~l~~~a~~~~~~iI~DE~Y~~~~~~~~~~~~~~~~~ 181 (332)
T PRK06425 103 ISALPFNLINNNPEILNNYNFDLIFIVSPDNPLGNL-ISRDSLLTISEICRKKGALLFIDEAFIDFVPNRAEEDVLLNRS 181 (332)
T ss_pred EEEEeCCcccCcHHHHhhcCCCEEEEeCCCCCcCCc-cCHHHHHHHHHHHHHcCCEEEEecchhccccccchhHHHHhcc
Confidence 34455543211 33334577888888999999964 5678899999999999999999999988743331111111111
Q ss_pred CCCEEE---eecccc-CCccchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHH
Q psy6548 82 RPDIVI---LGKALS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVIL-EENMIENAYKMGEIFRS 156 (242)
Q Consensus 82 ~~~~~~---~sK~~~-~g~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~-~~~~~~~~~~~~~~l~~ 156 (242)
.+++++ |||+++ +| +|+||+++++++++.+... ...+..+.+++.+.. ....-. .+...+.+++.++.+.+
T Consensus 182 ~~~vi~~~SfSK~~~l~G-lRiGy~v~~~~li~~l~~~--~~~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~r~~l~~ 257 (332)
T PRK06425 182 YGNVIIGRSLTKILGIPS-LRIGYIATDDYNMKISRKI--TEPWSVCDPAIDFIR-SIDLDYVAKHSLDIMENERSYLIN 257 (332)
T ss_pred CCCEEEEeecHHhcCCch-hhheeeecCHHHHHHHHHc--CCCCccCHHHHHHHH-HhhhHHHHHHHHHHHHHHHHHHHH
Confidence 234433 899999 99 9999999999998888763 223444444432221 111100 12356677788888888
Q ss_pred HHHhhcCCCCCCeEeeeceeEEEEecCCchhHHHHHHHHHHCCceeccC------CCCEEEEeccCcCCHHHHHHHHHHH
Q psy6548 157 ELRSRLSPDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPI------SNNIIRLSPALNITEQELREGLDII 230 (242)
Q Consensus 157 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~------~~~~lR~~~~~~~t~e~i~~~~~~l 230 (242)
.| +.++ +....++.|.++|+.++ +..++++.|.++||.+.++ +++++|++ ..+.++++++++.|
T Consensus 258 ~L-~~~g--~~~~~~~~g~f~~~~~~----~~~~~~~~l~~~gi~v~~~~~f~~~~~~~iRis---~~~~~~~~~l~~al 327 (332)
T PRK06425 258 NL-EAMG--FRAAGDPSANFITFMIP----DAHDFYSYLLKNGILVRLLDDYECLGEQYIRIA---IRRRSFNIKLVNAL 327 (332)
T ss_pred HH-HHCC--CEECCCCCceEEEEEcC----CHHHHHHHHHHCCeEEEECCCCCCCCCCEEEEE---eCCHHHHHHHHHHH
Confidence 88 5553 21112345778888876 3578999999999999875 24699999 44789999999999
Q ss_pred HHHH
Q psy6548 231 INTI 234 (242)
Q Consensus 231 ~~~l 234 (242)
++++
T Consensus 328 ~~~~ 331 (332)
T PRK06425 328 RNFL 331 (332)
T ss_pred HHHh
Confidence 8775
No 106
>PRK06207 aspartate aminotransferase; Provisional
Probab=99.91 E-value=4.6e-23 Score=176.38 Aligned_cols=222 Identities=13% Similarity=0.150 Sum_probs=153.5
Q ss_pred Chhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCccc-ccccCCCC-CCEEE
Q psy6548 11 QVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLL-AIHYEDVR-PDIVI 87 (242)
Q Consensus 11 d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~-~~~~~~~~-~~~~~ 87 (242)
|++. +...++++++++++.++|++|. +.+.+.+++|+++|++||++||+||+|.++...+... ....+... ..+++
T Consensus 167 d~~~l~~~~~~~~k~v~l~~P~NPTG~-~~s~e~l~~l~~~a~~~~~~iI~De~Y~~~~~~~~~~~~~~~~~~~~~~vi~ 245 (405)
T PRK06207 167 DLDQLEEAFKAGVRVFLFSNPNNPAGV-VYSAEEIAQIAALARRYGATVIVDQLYSRLLYDGTSYTHLRALPIDPENVIT 245 (405)
T ss_pred CHHHHHHhhhhcCeEEEECCCCCCCCc-CCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCCchhcCCCCcCcEEE
Confidence 3444 3333456788888888999995 5567889999999999999999999998874434221 11111221 22332
Q ss_pred ---eecccc-CCccchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHH--hccHHHHHHHHHHHHHHHHHhh
Q psy6548 88 ---LGKALS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVIL--EENMIENAYKMGEIFRSELRSR 161 (242)
Q Consensus 88 ---~sK~~~-~g~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~--~~~~~~~~~~~~~~l~~~l~~~ 161 (242)
|||+++ +| +|+||+++++++++.+.........+.+.+.+.++.++++... -++..+..+++++.+.+.| +.
T Consensus 246 i~SfSK~~~lpG-lRiG~ii~~~~l~~~~~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~r~~l~~~L-~~ 323 (405)
T PRK06207 246 IMGPSKTESLSG-YRLGVAFGSPAIIDRMEKLQAIVSLRAAGYSQAVLRTWFSEPDGWMKDRIARHQAIRDDLLRVL-RG 323 (405)
T ss_pred EecchhhccCcc-cceEEEEcCHHHHHHHHHHHhHhccCCCHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHH-hc
Confidence 899999 99 9999999999988888754333444556677777666664210 1223445555666676777 44
Q ss_pred cCCCCCCeEeeeceeEEEEecCCchhHHHHHHHHH-HCCceeccC------CCCEEEEeccCcCCHHHHHHHHHHHHHHH
Q psy6548 162 LSPDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMK-DAGLVTKPI------SNNIIRLSPALNITEQELREGLDIIINTI 234 (242)
Q Consensus 162 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~gi~~~~~------~~~~lR~~~~~~~t~e~i~~~~~~l~~~l 234 (242)
+. .+....+..|+++|++++....+..++++.|. ++||.+.|+ +.+++|+++. .+.+++++++++|.+.+
T Consensus 324 ~~-~~~~~~p~gg~fl~~~l~~~~~~~~~~~~~l~~~~gV~v~pG~~F~~~~~~~~Ris~~--~~~~~l~~al~rl~~~l 400 (405)
T PRK06207 324 VE-GVFVRAPQAGSYLFPRLPRLAVSLHDFVKILRLQAGVIVTPGTEFSPHTADSIRLNFS--QDHAAAVAAAERIAQLI 400 (405)
T ss_pred CC-CceecCCCeeEEEEEeCcccCCCHHHHHHHHHHhcCEEEeCchHhCCCCCCeEEEEec--CCHHHHHHHHHHHHHHH
Confidence 42 22222345688999998752135678999997 679999886 2578999954 57899999999999998
Q ss_pred HHHh
Q psy6548 235 NTMA 238 (242)
Q Consensus 235 ~~~~ 238 (242)
++.+
T Consensus 401 ~~~~ 404 (405)
T PRK06207 401 ERYR 404 (405)
T ss_pred HHhh
Confidence 7754
No 107
>COG0079 HisC Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism]
Probab=99.91 E-value=2.7e-23 Score=173.38 Aligned_cols=217 Identities=14% Similarity=0.165 Sum_probs=163.0
Q ss_pred ccccCCC----Chhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCccccccc
Q psy6548 4 QFPVKSK----QVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHY 78 (242)
Q Consensus 4 ~~~~~~~----d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~ 78 (242)
++.+|.+ |+++ ....++++.+|++++++||||. ..+.+.++++.+.+.+ +.++|+||+|.+|.. .. ....
T Consensus 123 ~~~v~~~~~~~d~~~~~~~~~~~~~lv~i~nPNNPTG~-~~~~~~l~~l~~~~~~-~~~vVvDEAY~eF~~--~~-~~~l 197 (356)
T COG0079 123 VVKVPLKEFRLDLDAILAAIRDKTKLVFLCNPNNPTGT-LLPREELRALLEALPE-GGLVVIDEAYIEFSP--ES-SLEL 197 (356)
T ss_pred EEEecccccccCHHHHHHhhhcCCCEEEEeCCCCCCCC-CCCHHHHHHHHHhCCC-CcEEEEeCchhhcCC--ch-hhhh
Confidence 4556663 3444 3333448999999999999995 4456778888888888 999999999998855 21 1122
Q ss_pred CCCCCCEEE---eecccc-CCccchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHh-ccHHHHHHHHHHH
Q psy6548 79 EDVRPDIVI---LGKALS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILE-ENMIENAYKMGEI 153 (242)
Q Consensus 79 ~~~~~~~~~---~sK~~~-~g~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~-~~~~~~~~~~~~~ 153 (242)
....+++++ |||+|| +| +|+||+++++++++.+.+ ....|+.|.++++++.++++.-.. +...+.+.+.+.+
T Consensus 198 ~~~~~nlivlRTfSKa~gLAG-lRlGy~ia~~~~i~~l~~--vr~p~~v~~~a~~aa~aal~~~~~~~~~~~~~~~~r~r 274 (356)
T COG0079 198 LKYPPNLIVLRTFSKAFGLAG-LRVGYAIANPELIAALNK--VRPPFNVSSPALAAAIAALRDADYLEESVERIREERER 274 (356)
T ss_pred ccCCCCEEEEEecHHhhhcch-hceeeccCCHHHHHHHHH--hcCCCCCCHHHHHHHHHHcccHHHHHHHHHHHHHHHHH
Confidence 222333554 999999 99 999999999999999987 666788899999999888774421 3456667777777
Q ss_pred HHHHHHhhcCCCCCCeEeeeceeEEEEecCCchhHHHHHHHHHHCCceeccCC-----CCEEEEeccCcCCHHHHHHHHH
Q psy6548 154 FRSELRSRLSPDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPIS-----NNIIRLSPALNITEQELREGLD 228 (242)
Q Consensus 154 l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~-----~~~lR~~~~~~~t~e~i~~~~~ 228 (242)
+.+.| +.++ .....++.++|++++.+.. . +..+.++|.++||+++.++ ++++|++ ..|+|+.+++++
T Consensus 275 l~~~l-~~~~--~~~v~pS~aNFvlv~~~~~-~-~~~l~~~L~~~giivR~~~~~~~~~~~lRit---vgt~een~~ll~ 346 (356)
T COG0079 275 LYAAL-KALG--LFGVFPSQANFVLVRVPDA-E-AAALAEALLKKGILVRDCSSVGLLPGYLRIT---VGTPEENDRLLA 346 (356)
T ss_pred HHHHH-HhCC--CCeecCCCCcEEEEECCCc-c-HHHHHHHHHHCCEEEEeCCCCCCCCCeEEEE---eCCHHHHHHHHH
Confidence 77777 6554 1112344588999998874 4 7789999999999999773 3599999 568899999999
Q ss_pred HHHHHHHH
Q psy6548 229 IIINTINT 236 (242)
Q Consensus 229 ~l~~~l~~ 236 (242)
.|+++++.
T Consensus 347 AL~~~~~~ 354 (356)
T COG0079 347 ALREVLKG 354 (356)
T ss_pred HHHHHHhc
Confidence 99988764
No 108
>PRK05957 aspartate aminotransferase; Provisional
Probab=99.91 E-value=7e-23 Score=174.50 Aligned_cols=224 Identities=13% Similarity=0.180 Sum_probs=157.6
Q ss_pred hhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCccc-cc-ccCCCCCCE---
Q psy6548 12 VPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLL-AI-HYEDVRPDI--- 85 (242)
Q Consensus 12 ~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~-~~-~~~~~~~~~--- 85 (242)
+++ +...+++++++++.+++|++|.+. +.+.+++|+++|++||+++|+||+|.++...+... .. ...+....+
T Consensus 150 ~~~l~~~i~~~~klv~~~~p~NPtG~~~-~~~~~~~i~~~a~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~ 228 (389)
T PRK05957 150 PEAIEQAITPKTRAIVTISPNNPTGVVY-PEALLRAVNQICAEHGIYHISDEAYEYFTYDGVKHFSPGSIPGSGNHTISL 228 (389)
T ss_pred HHHHHHhcCcCceEEEEeCCCCCCCcCc-CHHHHHHHHHHHHHcCcEEEEeccchhccCCCCCccChhhCCCccCcEEEE
Confidence 444 344456788988999999999554 56789999999999999999999998764332211 11 111222233
Q ss_pred EEeecccc-CCccchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHH--hccHHHHHHHHHHHHHHHHHhhc
Q psy6548 86 VILGKALS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVIL--EENMIENAYKMGEIFRSELRSRL 162 (242)
Q Consensus 86 ~~~sK~~~-~g~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~--~~~~~~~~~~~~~~l~~~l~~~l 162 (242)
.+|||.++ +| +|+||+++++++++++.........+.+.+++.++..+++... -++..+.++++++.+.+.| +.+
T Consensus 229 ~S~SK~~g~~G-lRiG~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~r~~l~~~L-~~~ 306 (389)
T PRK05957 229 YSLSKAYGFAS-WRIGYMVIPIHLLEAIKKIQDTILICPPVVSQYAALGALQVGKSYCQQHLPEIAQVRQILLKSL-GQL 306 (389)
T ss_pred ecchhhccCcc-ceeEEEecCHHHHHHHHHHHhhcccCCCcHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHH-Hhc
Confidence 33899998 89 9999999999999888764433344556677777666664211 1234456777888888888 555
Q ss_pred CCCCCCeEeeeceeEEEEecCCchhHHHHHHHHH-HCCceeccCC------CCEEEEeccCcCCHHHHHHHHHHHHHHHH
Q psy6548 163 SPDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMK-DAGLVTKPIS------NNIIRLSPALNITEQELREGLDIIINTIN 235 (242)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~gi~~~~~~------~~~lR~~~~~~~t~e~i~~~~~~l~~~l~ 235 (242)
+.......+..|+++|++++.. .+..++++.|. ++||.+.|+. .+++|+++.. .+++++++++++|.+.++
T Consensus 307 ~~~~~~~~~~gg~~~~~~~~~~-~~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRis~~~-~~~~~l~~~~~~l~~~~~ 384 (389)
T PRK05957 307 QDRCTLHPANGAFYCFLKVNTD-LNDFELVKQLIREYRVAVIPGTTFGMKNGCYLRIAYGA-LQKATAKEGIERLVQGLK 384 (389)
T ss_pred CCCccccCCCeeEEEEEeCCCC-CChHHHHHHHHHHCCEEEccchhhCCCCCCEEEEEEec-CCHHHHHHHHHHHHHHHH
Confidence 4211223345578899998765 56788999987 5899999862 4589999643 478899999999999988
Q ss_pred HHhhh
Q psy6548 236 TMAAK 240 (242)
Q Consensus 236 ~~~~~ 240 (242)
.+.+|
T Consensus 385 ~~~~~ 389 (389)
T PRK05957 385 TIVQQ 389 (389)
T ss_pred hhhcC
Confidence 86543
No 109
>PLN02483 serine palmitoyltransferase
Probab=99.91 E-value=1e-22 Score=177.32 Aligned_cols=223 Identities=18% Similarity=0.255 Sum_probs=160.4
Q ss_pred cccccCCCChhh--hcCC------CCC------EEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEecccc-c-
Q psy6548 3 LQFPVKSKQVPA--KLKS------NPN------ICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQT-G- 66 (242)
Q Consensus 3 ~~~~~~~~d~~~--~~~~------~~~------~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~-~- 66 (242)
.+..||+||+++ +.+. .++ ..+|++|+++++.|.+.+ +++|+++|++||+++|+||+|+ +
T Consensus 208 ~v~~~~~~d~~~le~~l~~~i~~~~p~t~~p~~k~livve~v~s~~G~~~~----l~~I~~la~~~~~~livDEa~s~g~ 283 (489)
T PLN02483 208 TIRVFQHNTPSHLEEVLREQIAEGQPRTHRPWKKIIVIVEGIYSMEGELCK----LPEIVAVCKKYKAYVYLDEAHSIGA 283 (489)
T ss_pred eEEEEeCCCHHHHHHHHHhhhhccccccccCCceEEEEECCCCCCCCcccC----HHHHHHHHHHcCCEEEEECcCccCc
Confidence 456789998876 2221 122 358899999999998876 9999999999999999999996 2
Q ss_pred cCccCcccccccCCCC---CCEE--EeeccccCCccchheeEeChhhhhccCCCCCCCCC--CCCHHHHHHHHHHHHHHH
Q psy6548 67 LGRTGKLLAIHYEDVR---PDIV--ILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTY--GGNPLACKLAMTALDVIL 139 (242)
Q Consensus 67 ~~~~g~~~~~~~~~~~---~~~~--~~sK~~~~g~~~~g~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~a~a~l~~~~ 139 (242)
+|++|.+ ..+.+++. .|++ +|||+|++ ..||+++++++++.++......++ +.++..+.++.++++.+.
T Consensus 284 ~G~~G~g-~~~~~~v~~~~~dI~~~SfSKs~g~---~GG~i~~~~~li~~l~~~~~~~~~~~~~~p~~~~~~~aaL~~l~ 359 (489)
T PLN02483 284 VGKTGRG-VCELLGVDPADVDIMMGTFTKSFGS---CGGYIAGSKELIQYLKRTCPAHLYATSMSPPAVQQVISAIKVIL 359 (489)
T ss_pred cCCCCCc-hHHhcCCCcccCcEEEEecchhccc---CceEEEcCHHHHHHHHHhCccccccCCcCHHHHHHHHHHHHHHH
Confidence 3444443 22344443 3555 49999982 348899999999998865444333 335555556677787654
Q ss_pred hc-------cHHHHHHHHHHHHHHHHHhhcCCCCCCeEeeeceeEEEEecCCchhHHHHHHHHHHCCceeccC-------
Q psy6548 140 EE-------NMIENAYKMGEIFRSELRSRLSPDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPI------- 205 (242)
Q Consensus 140 ~~-------~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~------- 205 (242)
.+ +..+.++++++++++.| ++++- .......++++++.+... .+..++++.|+++||.+.+.
T Consensus 360 ~~~g~~~~~~~~~~l~~~~~~l~~~L-~~~G~--~v~~~~~sp~~~l~l~~~-~~~~~~~~~Ll~~GI~v~~~~fp~~p~ 435 (489)
T PLN02483 360 GEDGTNRGAQKLAQIRENSNFFRSEL-QKMGF--EVLGDNDSPVMPIMLYNP-AKIPAFSRECLKQNVAVVVVGFPATPL 435 (489)
T ss_pred hCccccchHHHHHHHHHHHHHHHHHH-HHCCC--cccCCCCCCEEEEEECCH-HHHHHHHHHHHHCCcEEeeeCCCCCCC
Confidence 21 34677888999999999 66542 111123346677766654 46778999999999999742
Q ss_pred CCCEEEEeccCcCCHHHHHHHHHHHHHHHHHH
Q psy6548 206 SNNIIRLSPALNITEQELREGLDIIINTINTM 237 (242)
Q Consensus 206 ~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~ 237 (242)
..+.+|+++++.+|+|++++++++|+++++.+
T Consensus 436 ~~~~vRi~isa~~t~edId~~l~~L~~~~~~~ 467 (489)
T PLN02483 436 LLARARICISASHSREDLIKALEVISEVGDLV 467 (489)
T ss_pred CCceEEEEeCCCCCHHHHHHHHHHHHHHHHHh
Confidence 23689999999999999999999999988765
No 110
>PRK06348 aspartate aminotransferase; Provisional
Probab=99.91 E-value=4.7e-23 Score=175.28 Aligned_cols=216 Identities=18% Similarity=0.229 Sum_probs=152.3
Q ss_pred hhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccC-CCCCCEEE--
Q psy6548 12 VPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYE-DVRPDIVI-- 87 (242)
Q Consensus 12 ~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~-~~~~~~~~-- 87 (242)
+++ +...+++++++++++++|++|. +.+.+.+++|.++|++||++||+||+|.++...+........ +...++++
T Consensus 152 ~~~l~~~~~~~~~~v~l~~p~NPtG~-~~s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~ 230 (384)
T PRK06348 152 VKKLEALITSKTKAIILNSPNNPTGA-VFSKETLEEIAKIAIEYDLFIISDEVYDGFSFYEDFVPMATLAGMPERTITFG 230 (384)
T ss_pred HHHHHHhhCcCccEEEEeCCCCCCCc-CCCHHHHHHHHHHHHHCCeEEEEecccccceeCCCccchhhcCCCcCcEEEEe
Confidence 444 3333457788888888999995 557788999999999999999999999886433221111111 22223333
Q ss_pred -eecccc-CCccchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHHhhcC
Q psy6548 88 -LGKALS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILE--ENMIENAYKMGEIFRSELRSRLS 163 (242)
Q Consensus 88 -~sK~~~-~g~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~--~~~~~~~~~~~~~l~~~l~~~l~ 163 (242)
|||.++ +| +|+||+++++++++.+........++.+++++.++..+++..+. +.+.+.++++++.+.+.| +.++
T Consensus 231 SfSK~~~l~G-lRiG~~v~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~~~~~~L-~~~~ 308 (384)
T PRK06348 231 SFSKDFAMTG-WRIGYVIAPDYIIETAKIINEGICFSAPTISQRAAIYALKHRDTIVPLIKEEFQKRLEYAYKRI-ESIP 308 (384)
T ss_pred cchhccCCcc-ccceeeecCHHHHHHHHHHHHhccCCCCHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHH-hcCC
Confidence 899999 89 99999999998888777544445667788888887777653221 234566677777788888 5553
Q ss_pred CCCCCeEeeeceeEEEEecCCchhHHHHHHHHH-HCCceeccC------CCCEEEEeccCcCCHHHHHHHHHHHHHH
Q psy6548 164 PDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMK-DAGLVTKPI------SNNIIRLSPALNITEQELREGLDIIINT 233 (242)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~gi~~~~~------~~~~lR~~~~~~~t~e~i~~~~~~l~~~ 233 (242)
. .....+..|+++|++++....+..++++.|. +.||.+.|+ +++++|++. ..+++++++++++|++.
T Consensus 309 ~-~~~~~p~gg~~~~~~~~~~~~~~~~l~~~l~~~~gv~v~pg~~f~~~~~~~iRi~~--~~~~~~l~~al~~l~~~ 382 (384)
T PRK06348 309 N-LSLHPPKGSIYAFINIKKTGLSSVEFCEKLLKEAHVLVIPGKAFGESGEGYIRLAC--TVGIEVLEEAFNRIEKM 382 (384)
T ss_pred C-ceeccCCeeEEEEEecccCCCCHHHHHHHHHHhCCEEEcCchhhccCCCCeEEEEe--cCCHHHHHHHHHHHHhh
Confidence 2 2222344678889998743246788998887 569999875 257999995 45889999999998653
No 111
>TIGR01822 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A ligase. This model represents a narrowly defined clade of animal and bacterial (almost exclusively Proteobacterial) 2-amino-3-ketobutyrate--CoA ligase. This enzyme can act in threonine catabolism. The closest homolog from Bacillus subtilis, and sequences like it, may be functionally equivalent but were not included in the model because of difficulty in finding reports of function.
Probab=99.91 E-value=1.7e-22 Score=172.34 Aligned_cols=222 Identities=18% Similarity=0.281 Sum_probs=157.8
Q ss_pred ccccCCCChhh--hcCCC---C--CEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEecccc-cc-CccCccc
Q psy6548 4 QFPVKSKQVPA--KLKSN---P--NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQT-GL-GRTGKLL 74 (242)
Q Consensus 4 ~~~~~~~d~~~--~~~~~---~--~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~-~~-~~~g~~~ 74 (242)
.+.++++|+++ +.+.+ . ++++|++++++|++|.+.+ +++|+++|++||+++|+||+|. |+ +..+.+
T Consensus 146 ~~~~~~~d~~~l~~~i~~~~~~~~~~~~v~~~~v~~~tG~~~~----l~~i~~la~~~~~~li~De~~~~g~~~~~~~~- 220 (393)
T TIGR01822 146 RYRYANNDMADLEAQLKEARAAGARHRLIATDGVFSMDGVIAP----LDEICDLADKYDALVMVDECHATGFLGPTGRG- 220 (393)
T ss_pred eEEeCCCCHHHHHHHHHhhhhcCCCceEEEEeCCccCCCCcCC----HHHHHHHHHHcCCEEEEECCccccCcCCCCCc-
Confidence 34567888888 33432 2 7899999999999998776 9999999999999999999994 32 233322
Q ss_pred ccccCCC--CCCEEE--eeccccCCccchheeEeChhhhhccCCCCCCCCCC--CCHHHHHHHHHHHHHHHh-ccHHHHH
Q psy6548 75 AIHYEDV--RPDIVI--LGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYG--GNPLACKLAMTALDVILE-ENMIENA 147 (242)
Q Consensus 75 ~~~~~~~--~~~~~~--~sK~~~~g~~~~g~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~a~a~l~~~~~-~~~~~~~ 147 (242)
.....+. .+|+++ +||+++| +++||+.+++++++.+.+......++ .++..++++.++++.++. ++..+++
T Consensus 221 ~~~~~~~~~~~di~~~s~sK~l~g--~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~ 298 (393)
T TIGR01822 221 SHELCGVMGRVDIITGTLGKALGG--ASGGFTTARKEVVELLRQRSRPYLFSNSLPPAVVGASIKVLEMLEASNELRDRL 298 (393)
T ss_pred hHHhcCCCCCCeEEEEEChHHhhC--CCcEEEEeCHHHHHHHHHhCccceecCCCCHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 1122232 356664 8899874 68999999999888776532222222 345555566777776643 4577889
Q ss_pred HHHHHHHHHHHHhhcCCCCCCeEeeeceeEEEEecCCchhHHHHHHHHHHCCceecc-------CCCCEEEEeccCcCCH
Q psy6548 148 YKMGEIFRSELRSRLSPDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKP-------ISNNIIRLSPALNITE 220 (242)
Q Consensus 148 ~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~-------~~~~~lR~~~~~~~t~ 220 (242)
+++++++++.| +..+-... .+.+.++.+.++.. .+..++++.|.++||.+.. .+...+|+++++.+|+
T Consensus 299 ~~~~~~l~~~L-~~~g~~~~---~~~~~~~~i~~~~~-~~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~iRis~~~~~t~ 373 (393)
T TIGR01822 299 WANTRYFRERM-EAAGFDIK---PADHPIIPVMLYDA-VLAQRFARRLLEEGIYVTGFFYPVVPKGQARIRVQISAAHTE 373 (393)
T ss_pred HHHHHHHHHHH-HHcCCCCC---CCCCCEEEEEeCCH-HHHHHHHHHHHHCCeeEeeeCCCCCCCCCceEEEEECCCCCH
Confidence 99999999999 65532111 12344555555543 4678899999999999862 1345799999999999
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy6548 221 QELREGLDIIINTINTM 237 (242)
Q Consensus 221 e~i~~~~~~l~~~l~~~ 237 (242)
+|+++++++|+++.+++
T Consensus 374 edi~~~~~~l~~~~~~~ 390 (393)
T TIGR01822 374 EQLDRAVEAFTRIGREL 390 (393)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 99999999999987654
No 112
>KOG1360|consensus
Probab=99.91 E-value=1e-22 Score=165.03 Aligned_cols=222 Identities=16% Similarity=0.229 Sum_probs=173.7
Q ss_pred cccccCCCChhh--hcCC---CCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccc-cc-cCccCcccc
Q psy6548 3 LQFPVKSKQVPA--KLKS---NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQ-TG-LGRTGKLLA 75 (242)
Q Consensus 3 ~~~~~~~~d~~~--~~~~---~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~-~~-~~~~g~~~~ 75 (242)
+.+.|.|||++. +.++ ...+++|.+|.+++|+|.+.| ++||.+++++||++-++||+| .| +|..|.+..
T Consensus 280 ~K~IFrHND~~hL~~lL~~~~~svPKivAFEtVhSM~Gavcp----leelcDvah~yGAiTFlDEVHAVGlYG~rGaGvg 355 (570)
T KOG1360|consen 280 PKHIFRHNDLDHLEQLLQSSPKSVPKIVAFETVHSMDGAVCP----LEELCDVAHKYGAITFLDEVHAVGLYGPRGAGVG 355 (570)
T ss_pred cceeeccCCHHHHHHHHHhCCCCCCceEEEeeeeccCCCcCC----HHHHHHHHHHhCceeeeehhhhhccccCCCCCcc
Confidence 567899999999 4443 567889999999999999999 999999999999999999999 45 455554332
Q ss_pred cccCCC--CCCEEE--eeccccCCccchheeEeChhhhhccCCCCCCCCCC--CCHHHHHHHHHHHHHHHhc---cHHHH
Q psy6548 76 IHYEDV--RPDIVI--LGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYG--GNPLACKLAMTALDVILEE---NMIEN 146 (242)
Q Consensus 76 ~~~~~~--~~~~~~--~sK~~~~g~~~~g~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~a~a~l~~~~~~---~~~~~ 146 (242)
++.|+ ..|+++ ++|+|| .-.||+.++..+++.++....+..|+ .+|.-+++|++++++++.+ .++..
T Consensus 356 -erdGvm~kvDiIsGTLgKafG---cVGGYIAat~~LvDmiRSyAaGFIFTTSLPP~vl~GAleaVr~lk~~eg~~lR~~ 431 (570)
T KOG1360|consen 356 -ERDGVMHKVDIISGTLGKAFG---CVGGYIAATRKLVDMIRSYAAGFIFTTSLPPMVLAGALEAVRILKSEEGRVLRRQ 431 (570)
T ss_pred -ccCCcchhhhhcccchhhhcc---cccceehhhhhHHHHHHHhcCceEEecCCChHHHHhHHHHHHHHhhhhhHHHHHH
Confidence 44554 456776 889999 33456889999999998877666554 5677888899999998764 25566
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCeEeeeceeEEEEecCCchhHHHHHHHHH-HCCceec-------cCCCCEEEEeccCcC
Q psy6548 147 AYKMGEIFRSELRSRLSPDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMK-DAGLVTK-------PISNNIIRLSPALNI 218 (242)
Q Consensus 147 ~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~gi~~~-------~~~~~~lR~~~~~~~ 218 (242)
-+++.++++..| .+++-. ..+.-+.++.+.+.+. ..+.+..+.|+ ++||++- +.|...+|+.|+-.+
T Consensus 432 hqrnv~~~kq~l-~~~GiP---Vi~~pSHIiPv~vgda-~l~~~~sd~Li~~h~iYvQaINyPTV~rG~E~LRiaPTP~H 506 (570)
T KOG1360|consen 432 HQRNVKYVKQLL-MELGIP---VIPNPSHIIPVRVGDA-ALAKQASDILISKHNIYVQAINYPTVARGTERLRIAPTPHH 506 (570)
T ss_pred HHHHHHHHHHHH-HHcCCc---ccCCCcceeeeeccCH-HHHHHHHHHHHHhcCeEEEeccCCcccccceeeecCCCCCC
Confidence 667788888888 666632 2233456778888776 67788888888 4699884 347889999999999
Q ss_pred CHHHHHHHHHHHHHHHHHH
Q psy6548 219 TEQELREGLDIIINTINTM 237 (242)
Q Consensus 219 t~e~i~~~~~~l~~~l~~~ 237 (242)
|++.++.+++.+..+.+++
T Consensus 507 T~~mm~~lv~~l~~vw~~v 525 (570)
T KOG1360|consen 507 TPQMMNILVNALLDVWNEV 525 (570)
T ss_pred CHHHHHHHHHHHHHHHHHc
Confidence 9999999999999988875
No 113
>KOG1359|consensus
Probab=99.90 E-value=1.8e-22 Score=157.74 Aligned_cols=209 Identities=18% Similarity=0.262 Sum_probs=159.9
Q ss_pred CCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccc-cc-cCccCcccccccCCC--CCCEEE--eec
Q psy6548 17 KSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQ-TG-LGRTGKLLAIHYEDV--RPDIVI--LGK 90 (242)
Q Consensus 17 ~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~-~~-~~~~g~~~~~~~~~~--~~~~~~--~sK 90 (242)
..+.+.++|..+++++|.|++.| +++|.+++++||+++++||+| +| ||.+|.+-. +.++. .+|++. ++|
T Consensus 189 a~k~r~klv~TDg~FSMDGdiaP----l~ei~~La~kYgaLlfiDecHaTgf~G~tGrGt~-E~~~vm~~vdiinsTLgK 263 (417)
T KOG1359|consen 189 ACKMRLKLVVTDGVFSMDGDIAP----LEEISQLAKKYGALLFIDECHATGFFGETGRGTA-EEFGVMGDVDIINSTLGK 263 (417)
T ss_pred hhhheEEEEEecceeccCCCccc----HHHHHHHHHhcCcEEEEeecccceeecCCCCChH-HHhCCCCcceehhhhhhh
Confidence 34678999999999999999999 999999999999999999999 56 577776533 56665 345443 899
Q ss_pred cccCCccchheeEeChhhhhccCCCCCCCCCCCCH--HHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHHHHhhcCCCCC
Q psy6548 91 ALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNP--LACKLAMTALDVIL-EENMIENAYKMGEIFRSELRSRLSPDIV 167 (242)
Q Consensus 91 ~~~~g~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~--~~~~~a~a~l~~~~-~~~~~~~~~~~~~~l~~~l~~~l~~~~~ 167 (242)
++||. ..||..+++.++..+++....+.|+.+. .-...+.++++.+. +....+..+.+.+++++.+ ..-+-
T Consensus 264 AlGga--~GGyttgp~~li~llrqr~RpylFSnslppavV~~a~ka~dllm~s~~~i~~~~a~~qrfr~~m-e~aGf--- 337 (417)
T KOG1359|consen 264 ALGGA--SGGYTTGPKPLISLLRQRSRPYLFSNSLPPAVVGMAAKAYDLLMVSSKEIQSRQANTQRFREFM-EAAGF--- 337 (417)
T ss_pred hhcCC--CCCCccCChhHHHHHHhcCCceeecCCCChhhhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHH-HhcCc---
Confidence 99953 4678999999999998876666665442 22223445666554 4557788888999999988 44331
Q ss_pred CeEeeeceeEEEEecCCchhHHHHHHHHHHCCceec-------cCCCCEEEEeccCcCCHHHHHHHHHHHHHHHHHH
Q psy6548 168 PVVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTK-------PISNNIIRLSPALNITEQELREGLDIIINTINTM 237 (242)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~-------~~~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~ 237 (242)
+-.....++..+.+.+. +.+..+++.|+++||++- |.+...+|+..+..||+|||+++++++.++....
T Consensus 338 tIsg~~hPI~pv~lGda-~lA~~~ad~lLk~Gi~Vigfs~PvVP~gkariRVqiSAaHt~edid~~i~Af~~vgr~~ 413 (417)
T KOG1359|consen 338 TISGASHPICPVMLGDA-RLASKMADELLKRGIYVIGFSYPVVPKGKARIRVQISAAHTEEDIDRLIEAFSEVGRFL 413 (417)
T ss_pred eecCCCCCccceecccH-HHHHHHHHHHHhcCceEEeecCCcCCCCceEEEEEEehhcCHHHHHHHHHHHHHHHHhh
Confidence 11112235666777776 788899999999999983 4577889999999999999999999999887654
No 114
>PRK08068 transaminase; Reviewed
Probab=99.90 E-value=1.6e-22 Score=172.25 Aligned_cols=206 Identities=13% Similarity=0.132 Sum_probs=143.7
Q ss_pred CCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCc-ccc-cccCCCCCC-E--EEeecccc
Q psy6548 19 NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGK-LLA-IHYEDVRPD-I--VILGKALS 93 (242)
Q Consensus 19 ~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~-~~~-~~~~~~~~~-~--~~~sK~~~ 93 (242)
.++++++++.+++|++| ...+.+.+++|+++|++||+++|+||+|.++...+. ... ....+.... + .+|||.|+
T Consensus 165 ~~~~~~v~l~~P~NPTG-~~~s~~~~~~l~~la~~~~~~ii~Deay~~~~~~~~~~~s~~~~~~~~~~~i~~~S~SK~~g 243 (389)
T PRK08068 165 AEKAKLMYLNYPNNPTG-AVATKAFFEETVAFAKKHNIGVVHDFAYGAIGFDGQKPVSFLQTPGAKDVGIELYTLSKTFN 243 (389)
T ss_pred cccceEEEEECCCCCCC-CcCCHHHHHHHHHHHHHcCeEEEEehhhhhhccCCCCCcChhhCCCccCCEEEEecchhccC
Confidence 45788888887799999 466778899999999999999999999987644432 111 122222222 2 23999998
Q ss_pred -CCccchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHHhhcCCCCCCeE
Q psy6548 94 -GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILE--ENMIENAYKMGEIFRSELRSRLSPDIVPVV 170 (242)
Q Consensus 94 -~g~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~--~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~ 170 (242)
+| +|+||+++++++++.+.........+.+++.+.++.+++..... +...+.++++++.+.+.| +.++ +....
T Consensus 244 ~~G-lRiG~~~~~~~l~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~L-~~~g--~~~~~ 319 (389)
T PRK08068 244 MAG-WRVAFAVGNESVIEAINLLQDHLFVSLFGAIQDAAIEALLSDQSCVAELVARYESRRNAFISAC-REIG--WEVDA 319 (389)
T ss_pred Ccc-ceeEeEecCHHHHHHHHHHHhhccCCCChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHH-HHCC--CcccC
Confidence 89 99999999999988886543333334444455555555432111 345677778888888888 6654 22223
Q ss_pred eeeceeEEEEecCCchhHHHHHHHHHH-CCceeccC------CCCEEEEeccCcCCHHHHHHHHHHHHH
Q psy6548 171 RGKGLLNAIVLDKSILEVYDVCIKMKD-AGLVTKPI------SNNIIRLSPALNITEQELREGLDIIIN 232 (242)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~l~~-~gi~~~~~------~~~~lR~~~~~~~t~e~i~~~~~~l~~ 232 (242)
+..|+++|+.++.. .+..++++.|.+ +||.+.|+ +.+++|++. ..+++++++++++|.+
T Consensus 320 ~~g~~~~~v~~~~~-~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~--~~~~~~l~~al~~l~~ 385 (389)
T PRK08068 320 PKGSFFAWMPVPKG-YTSEQFADLLLEKAHVAVAPGNGFGEHGEGYVRVGL--LTDEERLREAVERIGK 385 (389)
T ss_pred CCeeEEEEEECCCC-CCHHHHHHHHHHhCCEEEecchHhCccCCCeEEEEE--cCCHHHHHHHHHHHHH
Confidence 34567889998764 467899999986 69999875 257999995 4567788888888765
No 115
>PRK08153 histidinol-phosphate aminotransferase; Provisional
Probab=99.90 E-value=2.6e-22 Score=169.86 Aligned_cols=210 Identities=12% Similarity=0.088 Sum_probs=149.1
Q ss_pred cCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEE---eeccc
Q psy6548 16 LKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVI---LGKAL 92 (242)
Q Consensus 16 ~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~---~sK~~ 92 (242)
.+.+++++++++..++|++|.+ .+.+.++++.++|+ ++++||+||+|.++...+....+. ...+++++ |||.+
T Consensus 150 ~~~~~~~~~i~l~~P~NPtG~~-~~~~~l~~l~~~~~-~~~~lI~DE~y~~~~~~~~~~~~~--~~~~~~i~~~SfSK~~ 225 (369)
T PRK08153 150 AARRENAPLVYLANPDNPMGSW-HPAADIVAFIEALP-ETTLLVLDEAYCETAPAGAAPPID--TDDPNVIRMRTFSKAY 225 (369)
T ss_pred HhcccCCcEEEEeCCCCCCCCC-CCHHHHHHHHHhCC-CCcEEEEeCchhhhcCcccchhhh--hcCCCEEEEecchHhc
Confidence 3445678888888889999854 46677888888886 499999999998875443211111 12334433 99999
Q ss_pred c-CCccchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHHHHhhcCCCCCCeE
Q psy6548 93 S-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVIL-EENMIENAYKMGEIFRSELRSRLSPDIVPVV 170 (242)
Q Consensus 93 ~-~g~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~-~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~ 170 (242)
+ +| +|+||+++++++++.+.... .+++.+++++.++.++++..+ .+...+.++++++.+.+.| +..+ . ...
T Consensus 226 g~~G-lRiG~~v~~~~~~~~l~~~~--~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~~~~~L-~~~g--~-~~~ 298 (369)
T PRK08153 226 GLAG-ARVGYAIGAPGTIKAFDKVR--NHFGMNRIAQAAALAALKDQAYLAEVVGKIAAARDRIAAIA-RANG--L-TPL 298 (369)
T ss_pred cCcc-hheeeeecCHHHHHHHHHhh--cCCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHH-HHCC--C-ccC
Confidence 9 89 99999999999988776532 346788899888888775211 1223455556666666666 4443 2 223
Q ss_pred eeeceeEEEEecCCchhHHHHHHHHHHCCceec-cC---CCCEEEEeccCcCCHHHHHHHHHHHHHHHHHHhh
Q psy6548 171 RGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTK-PI---SNNIIRLSPALNITEQELREGLDIIINTINTMAA 239 (242)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~-~~---~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~~~ 239 (242)
+..+++++++++.+...+.++.++|.++||.++ |+ +.+++|+++ .++++++++++.|++++..+++
T Consensus 299 p~~~~f~~~~~~~~~~~a~~l~~~l~~~Gi~v~~p~~~~~~~~iRis~---~~~~~~~~~~~al~~~~~~~~~ 368 (369)
T PRK08153 299 PSATNFVAIDCGRDGAFARAVLDGLIARDIFVRMPGVAPLDRCIRVSC---GPDEELDLFAEALPEALEAARK 368 (369)
T ss_pred CCcCcEEEEECCCCcccHHHHHHHHHHCCeEEeeCCCCCCCCeEEEec---CCHHHHHHHHHHHHHHHHHhhc
Confidence 456788888875432467889999999999995 43 246899993 3789999999999999876543
No 116
>PRK05958 8-amino-7-oxononanoate synthase; Reviewed
Probab=99.90 E-value=6.6e-22 Score=168.18 Aligned_cols=220 Identities=20% Similarity=0.268 Sum_probs=157.9
Q ss_pred cccccCCCChhh--hcCCC--CCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEecccc-c-cCccCccccc
Q psy6548 3 LQFPVKSKQVPA--KLKSN--PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQT-G-LGRTGKLLAI 76 (242)
Q Consensus 3 ~~~~~~~~d~~~--~~~~~--~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~-~-~~~~g~~~~~ 76 (242)
++..+|.+|+++ +.+.+ +++++++++++++++|...+ +++|+++|++||+++|+||+|. + ++..|.....
T Consensus 146 ~~~~~~~~d~~~l~~~i~~~~~~~~lvi~~~~~~~~G~~~~----l~~i~~ia~~~~~~li~De~~~~g~~~~~g~~~~~ 221 (385)
T PRK05958 146 RVRRYPHNDVDALEALLAKWRAGRALIVTESVFSMDGDLAP----LAELVALARRHGAWLLVDEAHGTGVLGPQGRGLAA 221 (385)
T ss_pred ceEEeCCCCHHHHHHHHHhccCCCeEEEEEecccCCCCcCC----HHHHHHHHHHhCCEEEEECcccccccCCCCCchHH
Confidence 345677788887 44433 25888999999999996655 9999999999999999999995 3 3333332211
Q ss_pred -ccCCCCCC---EEEeeccccCCccchheeEeChhhhhccCCCC--CCCCCCCCHHHHHHHHHHHHHHHh-ccHHHHHHH
Q psy6548 77 -HYEDVRPD---IVILGKALSGGLYPISAVLADDEVMGTLVPGT--HGSTYGGNPLACKLAMTALDVILE-ENMIENAYK 149 (242)
Q Consensus 77 -~~~~~~~~---~~~~sK~~~~g~~~~g~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~a~a~l~~~~~-~~~~~~~~~ 149 (242)
......++ +.++||+++. +.||+++++++++.+.... ...+.+.++++++++.++++.++. +++.+++++
T Consensus 222 ~~~~~~~~~~i~~~s~sK~~~~---~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~aal~~~~~~~~~~~~~~~ 298 (385)
T PRK05958 222 EAGLAGEPDVILVGTLGKALGS---SGAAVLGSETLIDYLINRARPFIFTTALPPAQAAAARAALRILRREPERRERLAA 298 (385)
T ss_pred hhCCCCCCceEEEEechhhccc---CCcEEEcCHHHHHHHHHhCccceecCCCCHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 01222345 3448999972 3478888888877664321 222334667777777888887765 367788999
Q ss_pred HHHHHHHHHHhhcCCCCCCeEeeeceeEEEEecCCchhHHHHHHHHHHCCceeccC-------CCCEEEEeccCcCCHHH
Q psy6548 150 MGEIFRSELRSRLSPDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPI-------SNNIIRLSPALNITEQE 222 (242)
Q Consensus 150 ~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~-------~~~~lR~~~~~~~t~e~ 222 (242)
+++++++.| +.++-. ..++.+.++++.++.. .+..++.+.|.++||.+.+. +++++|++++..+++++
T Consensus 299 ~~~~l~~~L-~~~~~~---~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~gI~v~~~~~~~~~~~~~~lRis~~~~~~~~~ 373 (385)
T PRK05958 299 LIARLRAGL-RALGFQ---LMDSQSAIQPLIVGDN-ERALALAAALQEQGFWVGAIRPPTVPAGTSRLRITLTAAHTEAD 373 (385)
T ss_pred HHHHHHHHH-HHcCCC---cCCCCCCEEEEEeCCH-HHHHHHHHHHHHCCceEecccCCCCCCCCceEEEEecCCCCHHH
Confidence 999999999 665421 1234567788887654 56778999999999999752 34689999999999999
Q ss_pred HHHHHHHHHHHH
Q psy6548 223 LREGLDIIINTI 234 (242)
Q Consensus 223 i~~~~~~l~~~l 234 (242)
+++++++|++++
T Consensus 374 i~~~l~~l~~~~ 385 (385)
T PRK05958 374 IDRLLEALAEAL 385 (385)
T ss_pred HHHHHHHHHhcC
Confidence 999999998753
No 117
>TIGR03537 DapC succinyldiaminopimelate transaminase. Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade.
Probab=99.90 E-value=2e-22 Score=169.42 Aligned_cols=213 Identities=14% Similarity=0.143 Sum_probs=146.7
Q ss_pred Chhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEE---
Q psy6548 11 QVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIV--- 86 (242)
Q Consensus 11 d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~--- 86 (242)
|+++ +.....+++++++++++|++|. ..+.+.+++|+++|++||+++|+||+|.++...+........+. ..++
T Consensus 125 d~~~l~~~~~~~~~~i~i~~p~NPtG~-~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~-~~~i~~~ 202 (350)
T TIGR03537 125 RLEKVEKSILEETKIVWINYPHNPTGA-TAPRSYLKETIAMCREHGIILCSDECYTEIYFGEPPHSALEVGI-ENVLAFH 202 (350)
T ss_pred CHHHHHHhhhhccEEEEEeCCCCCcCc-ccCHHHHHHHHHHHHHcCcEEEEeccccccccCCCCCchhhcCc-CCEEEEe
Confidence 4454 3333457888999989999994 55678899999999999999999999976532222211111121 2232
Q ss_pred Eeecccc-CCccchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHHHHhhcCC
Q psy6548 87 ILGKALS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVIL-EENMIENAYKMGEIFRSELRSRLSP 164 (242)
Q Consensus 87 ~~sK~~~-~g~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~-~~~~~~~~~~~~~~l~~~l~~~l~~ 164 (242)
++||.++ +| +|+||+++++++++.+.......+.+.+++++.++.+++.... .....+.++++++.+.+.| +..+
T Consensus 203 s~SK~~g~~G-lRiG~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~r~~l~~~~~~~~~~l-~~~g- 279 (350)
T TIGR03537 203 SLSKRSGMTG-YRSGFVAGDEKLISFLRKLRANFGVASPDFVQAAAKAAWSDDNHVLERRKIFKRKRDLFIEFF-NKVG- 279 (350)
T ss_pred ecccccCCcc-ccceeeecCHHHHHHHHHHHHhhccCCCHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHH-HHCC-
Confidence 3899997 88 9999999999888877754333344455566666655543111 1234566667777777777 4443
Q ss_pred CCCCeEeeeceeEEEEecCCchhHHHHHHHHHHCCceeccC------CCCEEEEeccCcCCHHHHHHHHHHHHH
Q psy6548 165 DIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPI------SNNIIRLSPALNITEQELREGLDIIIN 232 (242)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~------~~~~lR~~~~~~~t~e~i~~~~~~l~~ 232 (242)
.....+..|+++|++++.. .+..+++++|.++||.+.++ ..+++|++. ..+++++++++++|++
T Consensus 280 -~~~~~~~g~~~~~~~~~~~-~~~~~l~~~L~~~gv~v~~g~~f~~~~~~~~Ri~~--~~~~~~~~~~l~~~~~ 349 (350)
T TIGR03537 280 -LEYLYPDATFYLWVKVPSG-IDAKDYALRLLENGIVVAPGENFGSGEEGYVRVAL--VPTLEECEEALRLWER 349 (350)
T ss_pred -CcccCCCeEEEEEEECCCC-CCHHHHHHHHHHCCEEEcCchhhCCCCCCEEEEEe--cCCHHHHHHHHHHHhc
Confidence 2222344577889998864 56789999999999999875 257899994 4688999999998865
No 118
>PRK07366 succinyldiaminopimelate transaminase; Validated
Probab=99.90 E-value=2.8e-22 Score=170.79 Aligned_cols=208 Identities=13% Similarity=0.174 Sum_probs=142.4
Q ss_pred CCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcc--cccccCC-CCCCEE---Eeeccc
Q psy6548 19 NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKL--LAIHYED-VRPDIV---ILGKAL 92 (242)
Q Consensus 19 ~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~--~~~~~~~-~~~~~~---~~sK~~ 92 (242)
..+++++++++++||+|. +.+.+.+++|+++|++||++||+||+|.+|...+.. ....... ....++ +|||.+
T Consensus 163 ~~~~k~i~l~~p~NPTG~-~~s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~ 241 (388)
T PRK07366 163 LAQARLMVLSYPHNPTTA-IAPLSFFQEAVAFCQQHDLVLVHDFPYVDLVFDGEVEPPSILQADPEKSVSIEFFTLSKSY 241 (388)
T ss_pred cccceEEEEeCCCCCCCc-cCCHHHHHHHHHHHHHcCeEEEEecchhhcccCCCCCCCChhhCCCCcccEEEEeeccccc
Confidence 346788899999999995 557788999999999999999999999887433321 1111111 112222 499999
Q ss_pred c-CCccchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHH--hccHHHHHHHHHHHHHHHHHhhcCCCCCCe
Q psy6548 93 S-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVIL--EENMIENAYKMGEIFRSELRSRLSPDIVPV 169 (242)
Q Consensus 93 ~-~g~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~--~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~ 169 (242)
+ +| +|+||+++++++++.+........++..+..+.++.+++...+ -+...+.++++++.+.+.| +.++ +...
T Consensus 242 g~~G-lRiG~~v~~~~li~~l~~~~~~~~~~~~~~~~~~a~~~l~~~~~~l~~~~~~~~~~r~~l~~~L-~~~~--~~~~ 317 (388)
T PRK07366 242 NMGG-FRIGFAIGNAQLIQALRQVKAVVDFNQYRGILNGAIAALTGPQATVQQTVQIFRQRRDAFINAL-HQIG--WPVP 317 (388)
T ss_pred CCcc-hhheehcCCHHHHHHHHHHHhhcccCCCHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHH-HHCC--Cccc
Confidence 7 99 9999999999998888754333333333333334444443111 1335666777788888888 5553 2223
Q ss_pred EeeeceeEEEEecCCc-hhHHHHHHHHH-HCCceeccC------CCCEEEEeccCcCCHHHHHHHHHHHHHH
Q psy6548 170 VRGKGLLNAIVLDKSI-LEVYDVCIKMK-DAGLVTKPI------SNNIIRLSPALNITEQELREGLDIIINT 233 (242)
Q Consensus 170 ~~~~~~~~~~~~~~~~-~~~~~~~~~l~-~~gi~~~~~------~~~~lR~~~~~~~t~e~i~~~~~~l~~~ 233 (242)
.+..|+++|++++... .+..++++.|. ++||.+.|+ +.+++|++. ..+++++++++++|++.
T Consensus 318 ~p~~g~f~~~~~~~~~~~~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRi~~--~~~~~~l~~~l~rl~~~ 387 (388)
T PRK07366 318 LPEATMYVWAKLPEPWQGNSVEFCTQLVAQTGVAASPGSGFGKSGEGYVRFAL--VHDPDILEEAVERIAAF 387 (388)
T ss_pred CCCeeEEEEEECCcccCCCHHHHHHHHHHhCCEEEeCchHhCcCCCCeEEEEe--cCCHHHHHHHHHHHHHh
Confidence 3557899999987631 23567877774 679999886 247899995 45789999999999764
No 119
>PRK06290 aspartate aminotransferase; Provisional
Probab=99.90 E-value=1.9e-22 Score=172.66 Aligned_cols=222 Identities=15% Similarity=0.181 Sum_probs=152.6
Q ss_pred Chhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCccccc-ccCCCCCC-EE-
Q psy6548 11 QVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAI-HYEDVRPD-IV- 86 (242)
Q Consensus 11 d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~-~~~~~~~~-~~- 86 (242)
|++. +....++++++++++++||+|. +.+.+.+++|+++|++||++||+||+|.++...+....+ ...+.... ++
T Consensus 168 d~~~l~~~~~~~~k~i~l~nP~NPTG~-v~s~e~l~~l~~la~~~~~~iI~DEaY~~~~~~~~~~s~~~~~~~~~~~I~i 246 (410)
T PRK06290 168 DLDSIPKDIKEKAKLLYLNYPNNPTGA-VATKEFYEEVVDFAKENNIIVVQDAAYAALTFDGKPLSFLSVPGAKEVGVEI 246 (410)
T ss_pred CHHHHHHhhcccceEEEEECCCCCCCc-CCCHHHHHHHHHHHHHcCeEEEEecchhhceeCCCCcChhcCCCccccEEEE
Confidence 4444 3333457889998888999995 557788999999999999999999999876333221111 11111112 33
Q ss_pred -Eeecccc-CCccchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHHHHhhcC
Q psy6548 87 -ILGKALS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVIL-EENMIENAYKMGEIFRSELRSRLS 163 (242)
Q Consensus 87 -~~sK~~~-~g~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~-~~~~~~~~~~~~~~l~~~l~~~l~ 163 (242)
+|||.++ +| +|+||+++++++++.+.........+.+.+++.++.++++..+ .+...+.++++++.+.+.| +..+
T Consensus 247 ~SfSK~~g~~G-lRiG~ii~~~~l~~~l~~~~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~l~~~L-~~~g 324 (410)
T PRK06290 247 HSLSKAYNMTG-WRLAFVVGNELIVKAFATVKDNNDSGQFIAIQKAGIYALDHPEITEKIREKYSRRLDKLVKIL-NEVG 324 (410)
T ss_pred eechhhcCCch-hheEeEEeCHHHHHHHHHHHhccccCCcHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHHHHHH-HhCC
Confidence 3999997 89 9999999999998888754333444455567776666665321 1335666777888888888 5553
Q ss_pred CCCCCeEeeeceeEEEEecCCc------hhHHHHHHHHHHCCcee-ccC--CCCEEEEecc-CcCCHHHHHHHHHHHHHH
Q psy6548 164 PDIVPVVRGKGLLNAIVLDKSI------LEVYDVCIKMKDAGLVT-KPI--SNNIIRLSPA-LNITEQELREGLDIIINT 233 (242)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~gi~~-~~~--~~~~lR~~~~-~~~t~e~i~~~~~~l~~~ 233 (242)
+....+..++++|+.++... .+..+++++|.++|+++ .|+ .++++|++.. ...++|+.+++++.|++.
T Consensus 325 --~~~~~p~g~f~l~v~lp~~~~~~~~~~~~~~~~~~Ll~~~~v~~~p~~~~~~~lRi~~~~~~~~~~~~~~~~~~l~~~ 402 (410)
T PRK06290 325 --FKAEMPGGTFYLYVKAPKGTKSGIKFENAEEFSQYLIKEKLISTVPWDDAGHFLRFSVTFEAKDEEEEDRILEEIKRR 402 (410)
T ss_pred --CeecCCCeeeEEEEECCCccccCCCCCCHHHHHHHHHHhCCEEEECCccccCeEEEEEEcccccccchhHHHHHHHHH
Confidence 22222345788888887531 25778999999886544 454 2468999943 234889999999999999
Q ss_pred HHHH
Q psy6548 234 INTM 237 (242)
Q Consensus 234 l~~~ 237 (242)
++++
T Consensus 403 ~~~~ 406 (410)
T PRK06290 403 LSDV 406 (410)
T ss_pred Hhhc
Confidence 9875
No 120
>PRK03317 histidinol-phosphate aminotransferase; Provisional
Probab=99.90 E-value=2.3e-22 Score=170.16 Aligned_cols=205 Identities=16% Similarity=0.145 Sum_probs=142.6
Q ss_pred hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEE---Eeecc
Q psy6548 15 KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIV---ILGKA 91 (242)
Q Consensus 15 ~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~---~~sK~ 91 (242)
+.+.+++++++++++++|++|.+.+ .+++.++++.+++++|+||+|.+|++.+........+..++++ +|||+
T Consensus 154 ~~~~~~~~~~i~l~~p~NPtG~~~~----~~~l~~l~~~~~~~lI~DE~y~~~~~~~~~~~~~~~~~~~~~i~~~SfSK~ 229 (368)
T PRK03317 154 AAIAEHRPDVVFLTSPNNPTGTALP----LDDVEAILDAAPGIVVVDEAYAEFRRSGTPSALTLLPEYPRLVVSRTMSKA 229 (368)
T ss_pred HHHhccCCCEEEEeCCCCCCCCCCC----HHHHHHHHHHCCceEEEeCCchhhcccCCcCHHHHHHhCCCEEEEEechhh
Confidence 4444557778888899999997665 4555556666689999999999886554332223333345655 59999
Q ss_pred cc-CCccchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHhhcCCCCCCe
Q psy6548 92 LS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILE-ENMIENAYKMGEIFRSELRSRLSPDIVPV 169 (242)
Q Consensus 92 ~~-~g~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~-~~~~~~~~~~~~~l~~~l~~~l~~~~~~~ 169 (242)
++ +| +|+||+++++++++.+.... .+++.+++++.++.++++.... .+..+.++++++.+.+.| +..+ ....
T Consensus 230 ~g~~G-lRiG~~~~~~~~~~~l~~~~--~~~~~s~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~L-~~~g--~~~~ 303 (368)
T PRK03317 230 FAFAG-GRLGYLAAAPAVVDALRLVR--LPYHLSAVTQAAARAALRHADELLASVAALRAERDRVVAWL-RELG--LRVA 303 (368)
T ss_pred hccch-hhhhhhhCCHHHHHHHHhcC--CCCCCCHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHH-HHCC--CEeC
Confidence 98 89 99999999999998887633 4667888998888888764322 223345566666777777 4443 2111
Q ss_pred EeeeceeEEEEecCCchhHHHHHHHHHHCCceeccCC-CCEEEEeccCcCCHHHHHHHHHHHHHHHHH
Q psy6548 170 VRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPIS-NNIIRLSPALNITEQELREGLDIIINTINT 236 (242)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~-~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~ 236 (242)
.+..++++|..+. +..++.+.|.++||.+.+.+ ++++|+++ .+.++++++++.|+++++.
T Consensus 304 ~~~~~~~~~~~~~----~~~~~~~~l~~~Gv~v~~~~~~~~iRi~~---~~~~~~~~~~~~l~~~~~~ 364 (368)
T PRK03317 304 PSDANFVLFGRFA----DRHAVWQGLLDRGVLIRDVGIPGWLRVTI---GTPEENDAFLAALAEVLAT 364 (368)
T ss_pred CCCCcEEEEeccC----CHHHHHHHHHHCCEEEEeCCCCCeEEEec---CCHHHHHHHHHHHHHHHHH
Confidence 1223444443432 35789999999999998754 57999993 3788999999999988764
No 121
>PRK09082 methionine aminotransferase; Validated
Probab=99.90 E-value=2.3e-22 Score=171.16 Aligned_cols=215 Identities=13% Similarity=0.164 Sum_probs=149.0
Q ss_pred Chhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcc-cc-cccCCCCCCEE-
Q psy6548 11 QVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKL-LA-IHYEDVRPDIV- 86 (242)
Q Consensus 11 d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~-~~-~~~~~~~~~~~- 86 (242)
|+++ +...+++++++++++++|++|.+ .+.+.++++.++|++||+++|+||+|.++...+.. .. ....+....++
T Consensus 152 d~~~l~~~~~~~~~~v~l~~p~NPtG~~-~~~~~~~~i~~~a~~~~i~li~De~y~~~~~~~~~~~s~~~~~~~~~~~i~ 230 (386)
T PRK09082 152 DWQRFAAAISPRTRLIILNTPHNPSGTV-WSAADMRALWQLIAGTDIYVLSDEVYEHIVFDGAGHASVLRHPELRERAFV 230 (386)
T ss_pred CHHHHHHhcCccceEEEEeCCCCCCCcC-CCHHHHHHHHHHHHHCCEEEEEehhhhhhccCCCCCCChhhCcCccCcEEE
Confidence 3444 33334578888888889999954 46788999999999999999999999876433321 11 11222223333
Q ss_pred --Eeecccc-CCccchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHH--hccHHHHHHHHHHHHHHHHHhh
Q psy6548 87 --ILGKALS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVIL--EENMIENAYKMGEIFRSELRSR 161 (242)
Q Consensus 87 --~~sK~~~-~g~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~--~~~~~~~~~~~~~~l~~~l~~~ 161 (242)
+|||.++ +| +|+||+++++++++.+........++.+.+++.++.+.++... .+.+.+.++++++.+.+.| +.
T Consensus 231 ~~S~SK~~~~~G-~RiG~iv~~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L-~~ 308 (386)
T PRK09082 231 VSSFGKTYHVTG-WKVGYCVAPAALSAEFRKVHQYNTFTVNTPAQLALADYLRAEPEHYLELPAFYQAKRDRFRAAL-AN 308 (386)
T ss_pred Eeechhhccchh-hhhhhhhCCHHHHHHHHHHHhhhcCCCChHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHH-Hh
Confidence 3899997 89 9999999999998888765444556677777776555554111 1234556677888888888 54
Q ss_pred cCCCCCCeEeeeceeEEEEecC-CchhHHHHHHHH-HHCCceeccC--------CCCEEEEeccCcCCHHHHHHHHHHHH
Q psy6548 162 LSPDIVPVVRGKGLLNAIVLDK-SILEVYDVCIKM-KDAGLVTKPI--------SNNIIRLSPALNITEQELREGLDIII 231 (242)
Q Consensus 162 l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l-~~~gi~~~~~--------~~~~lR~~~~~~~t~e~i~~~~~~l~ 231 (242)
.+ +....+..|+++|++++. +..+..++++.| .++||.+.|+ +.+++|++. ..+++++++++++|+
T Consensus 309 ~~--~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~v~pg~~f~~~~~~~~~~Ri~~--~~~~~~l~~~~~rl~ 384 (386)
T PRK09082 309 SR--FKLLPCEGTYFQLVDYSAISDLDDVEFCQWLTREHGVAAIPLSVFYADPFPHRLVRLCF--AKQEETLDAAAERLC 384 (386)
T ss_pred CC--CcccCCCeeEEEEEeccccCCCCHHHHHHHHHHhCCEEEeCcHHhCCCCCCCCEEEEEe--cCCHHHHHHHHHHHh
Confidence 43 222334567889998873 114678898886 5779999875 246899995 458899999999886
Q ss_pred H
Q psy6548 232 N 232 (242)
Q Consensus 232 ~ 232 (242)
+
T Consensus 385 ~ 385 (386)
T PRK09082 385 Q 385 (386)
T ss_pred h
Confidence 4
No 122
>PRK06939 2-amino-3-ketobutyrate coenzyme A ligase; Provisional
Probab=99.90 E-value=8.6e-22 Score=168.19 Aligned_cols=222 Identities=16% Similarity=0.283 Sum_probs=155.6
Q ss_pred ccccCCCChhh--hcCCC---C--CEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEecccc-cc-CccCccc
Q psy6548 4 QFPVKSKQVPA--KLKSN---P--NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQT-GL-GRTGKLL 74 (242)
Q Consensus 4 ~~~~~~~d~~~--~~~~~---~--~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~-~~-~~~g~~~ 74 (242)
++.++++|+++ +.+.+ + ++++|+++++++++|...+ +++|+++|++||+++|+||+|+ ++ +..+.+
T Consensus 150 ~~~~~~~d~~~l~~~i~~~~~~~~~~~~v~~~~v~~~~G~~~~----~~~l~~la~~~~~~li~De~~~~g~~~~~~~~- 224 (397)
T PRK06939 150 RYRYANNDMADLEAQLKEAKEAGARHKLIATDGVFSMDGDIAP----LPEICDLADKYDALVMVDDSHAVGFVGENGRG- 224 (397)
T ss_pred eEEeCCCCHHHHHHHHHhhhccCCCCeEEEEecCcCCCCCcCC----HHHHHHHHHHhCCEEEEECcccccCcCCCCCC-
Confidence 45567788887 33322 3 7889999999999996443 9999999999999999999994 33 222321
Q ss_pred ccccCCC--CCCEE--EeeccccCCccchheeEeChhhhhccCCCCCCCCC--CCCHHHHHHHHHHHHHHHh-ccHHHHH
Q psy6548 75 AIHYEDV--RPDIV--ILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTY--GGNPLACKLAMTALDVILE-ENMIENA 147 (242)
Q Consensus 75 ~~~~~~~--~~~~~--~~sK~~~~g~~~~g~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~a~a~l~~~~~-~~~~~~~ 147 (242)
.....++ .++++ ++||+++| +++||+++++++++.+.+......+ +.++..++++.++++.+.. +++.+++
T Consensus 225 ~~~~~~~~~~~~i~~~S~sK~~~g--~r~G~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~ 302 (397)
T PRK06939 225 TVEHFGVMDRVDIITGTLGKALGG--ASGGYTAGRKEVIDWLRQRSRPYLFSNSLAPAIVAASIKVLELLEESDELRDRL 302 (397)
T ss_pred HHHHcCCCCCCcEEEEECHHHhCc--cCceEEEeCHHHHHHHHHhCccccccCCCCHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 1222333 34566 48999964 5789999999988887653222222 2334455666777776654 3567888
Q ss_pred HHHHHHHHHHHHhhcCCCCCCeEeeeceeEEEEecCCchhHHHHHHHHHHCCceeccC-------CCCEEEEeccCcCCH
Q psy6548 148 YKMGEIFRSELRSRLSPDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPI-------SNNIIRLSPALNITE 220 (242)
Q Consensus 148 ~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~-------~~~~lR~~~~~~~t~ 220 (242)
+++++.+++.| +.++... ..+.+.++++.++.. .+..++++.|.++||.+.+. +.+++|+++++.+++
T Consensus 303 ~~~~~~l~~~L-~~~~~~~---~~~~~~~~~~~~~~~-~~~~~~~~~L~~~gI~v~~~~~~~~~~~~~~iRi~~~~~~~~ 377 (397)
T PRK06939 303 WENARYFREGM-TAAGFTL---GPGEHPIIPVMLGDA-KLAQEFADRLLEEGVYVIGFSFPVVPKGQARIRTQMSAAHTK 377 (397)
T ss_pred HHHHHHHHHHH-HHcCCCc---CCCCCCEEEEEECCH-HHHHHHHHHHHHCCceEeeeCCCCCCCCCceEEEEECCCCCH
Confidence 89999999999 6654211 112344444445443 46788999999999988642 246899999998999
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy6548 221 QELREGLDIIINTINTM 237 (242)
Q Consensus 221 e~i~~~~~~l~~~l~~~ 237 (242)
+++++++++|+++++++
T Consensus 378 ~~i~~~l~~L~~~~~~~ 394 (397)
T PRK06939 378 EQLDRAIDAFEKVGKEL 394 (397)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 99999999999988764
No 123
>PRK09276 LL-diaminopimelate aminotransferase; Provisional
Probab=99.90 E-value=3.2e-22 Score=170.25 Aligned_cols=206 Identities=14% Similarity=0.203 Sum_probs=142.9
Q ss_pred CCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCccc-cc-ccCCCC---CCEEEeecccc
Q psy6548 19 NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLL-AI-HYEDVR---PDIVILGKALS 93 (242)
Q Consensus 19 ~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~-~~-~~~~~~---~~~~~~sK~~~ 93 (242)
.++++++++++++|++|. +.+.+.+++|+++|++||+++|+||+|.++...+... .. ...+.. ..+.+|||.|+
T Consensus 164 ~~~~~~v~l~~p~NPtG~-~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g 242 (385)
T PRK09276 164 AKKAKLMFINYPNNPTGA-VADLEFFEEVVDFAKKYDIIVCHDAAYSEIAYDGYKPPSFLEVPGAKDVGIEFHSLSKTYN 242 (385)
T ss_pred cccceEEEEeCCCCCCCC-CCCHHHHHHHHHHHHHCCcEEEEecchhheecCCCCCCChhccCCCcCCEEEEecchhhcC
Confidence 457889999988999995 5577889999999999999999999998764332211 11 111111 12334999998
Q ss_pred -CCccchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHHhhcCCCCCCeE
Q psy6548 94 -GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILE--ENMIENAYKMGEIFRSELRSRLSPDIVPVV 170 (242)
Q Consensus 94 -~g~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~--~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~ 170 (242)
+| +|+||+++++++++.+.........+.+.+.+.++.++++..+. +...+.++++++.+.+.| +..+ +....
T Consensus 243 ~~G-lRiG~~i~~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L-~~~~--~~~~~ 318 (385)
T PRK09276 243 MTG-WRIGFAVGNADLIAGLGKVKSNVDSGVFQAIQEAGIAALNGPQEVVEELRKIYQERRDILVEGL-RKLG--LEVEP 318 (385)
T ss_pred Ccc-hhheeeeCCHHHHHHHHHHHhhccCCCCHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHH-HhCC--CcccC
Confidence 89 99999999999888876532222334455666666666542111 234566677777788888 5543 22222
Q ss_pred eeeceeEEEEecCCchhHHHHHHHHH-HCCceeccC------CCCEEEEeccCcCCHHHHHHHHHHHHH
Q psy6548 171 RGKGLLNAIVLDKSILEVYDVCIKMK-DAGLVTKPI------SNNIIRLSPALNITEQELREGLDIIIN 232 (242)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~l~-~~gi~~~~~------~~~~lR~~~~~~~t~e~i~~~~~~l~~ 232 (242)
+..++++|+.++.. .+..+++++|+ ++||.+.|+ +++++|+++ ..+++++.+++++|.+
T Consensus 319 ~~~~~~~~v~~~~~-~~~~~l~~~ll~~~gi~v~~g~~f~~~~~~~~Ris~--~~~~~~l~~~l~~l~~ 384 (385)
T PRK09276 319 PKATFYVWAPVPKG-YTSAEFATLLLDKAGVVVTPGNGFGEYGEGYFRIAL--TVPDERIEEAVERIKK 384 (385)
T ss_pred CCcceEEEEECCCC-CCHHHHHHHHHHhCCEEECCchhhCCCCCCeEEEEe--CCCHHHHHHHHHHHhh
Confidence 34577889998765 56788888887 579999886 247999995 4578888888888754
No 124
>PRK15481 transcriptional regulatory protein PtsJ; Provisional
Probab=99.89 E-value=3.6e-22 Score=172.32 Aligned_cols=206 Identities=16% Similarity=0.123 Sum_probs=148.5
Q ss_pred CCCEEEEEEc-ccccCCCcccCCHHHHHHHHHHHHhh-CCEEEEeccccccCccCcccccccCCCCCCEEE---eecccc
Q psy6548 19 NPNICAFMVE-PIQGEAGAVVPDDGYLKKVRALCSQY-NVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVI---LGKALS 93 (242)
Q Consensus 19 ~~~~~~i~~e-~~~~~~G~~~~~~~~l~~l~~l~~~~-~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~---~sK~~~ 93 (242)
+.+++++++. +++||+|. ..+.+.+++|.++|++| +++||+||+|.+|...+....... ..+.+++ |||.|+
T Consensus 209 ~~~~k~i~~~p~p~NPTG~-~~s~~~~~~l~~la~~~~~~~ii~De~Y~~~~~~~~~~~~~~--~~~~vi~~~SfSK~~~ 285 (431)
T PRK15481 209 AQGARAVILTPRAHNPTGC-SLSARRAAALRNLLARYPQVLVIIDDHFALLSSSPYHSVIPQ--TTQRWALIRSVSKALG 285 (431)
T ss_pred hcCCCEEEECCCCCCCCCc-cCCHHHHHHHHHHHHhcCCceEEecCchhhhccCCCCCCCcC--CCCCEEEEeeeccccC
Confidence 3467787887 68999995 55678899999999999 999999999988743221111111 1233333 999999
Q ss_pred CCccchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHh----ccHHHHHHHHHHHHHHHHHhhcCCCCCCe
Q psy6548 94 GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILE----ENMIENAYKMGEIFRSELRSRLSPDIVPV 169 (242)
Q Consensus 94 ~g~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~----~~~~~~~~~~~~~l~~~l~~~l~~~~~~~ 169 (242)
+| +|+||+++++++++.+.......+++.+.+++.++.++++...- +...+.++++++.+.+.| +..+ +...
T Consensus 286 ~G-lRiG~~i~~~~~~~~~~~~~~~~~~~~s~~~q~a~~~~l~~~~~~~~l~~~~~~~~~~r~~~~~~L-~~~~--~~~~ 361 (431)
T PRK15481 286 PD-LRLAFVASDSATSARLRLRLNSGTQWVSHLLQDLVYACLTDPEYQARLAQARLFYAQRRQKLARAL-QQYG--IAIP 361 (431)
T ss_pred CC-ceeEEEeCCHHHHHHHHHHHhccccCCCHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHH-HHcC--Cccc
Confidence 99 99999999998888876433333455778888887777763211 234566677777777777 5443 2222
Q ss_pred EeeeceeEEEEecCCchhHHHHHHHHHHCCceeccCC-------CCEEEEeccCcCCHHHHHHHHHHHHHHHH
Q psy6548 170 VRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPIS-------NNIIRLSPALNITEQELREGLDIIINTIN 235 (242)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~-------~~~lR~~~~~~~t~e~i~~~~~~l~~~l~ 235 (242)
.+..|+++|++++.. ..++++.|.++||.+.|+. .+++|+++... +++++++++++|+++++
T Consensus 362 ~p~gg~f~~~~l~~~---~~~~~~~l~~~gV~v~pg~~f~~~~~~~~iRis~~~~-~~~~i~~~~~~l~~~~~ 430 (431)
T PRK15481 362 SPGDGLNLWLPLDTD---SQATALTLAKSGWLVREGEAFGVSAPSHGLRITLSTL-NDAEINRLAADLHQALN 430 (431)
T ss_pred cCCCeEEEEEECCCC---HHHHHHHHHHCCcEEecCCccccCCCCCeEEEEcCCC-ChHHHHHHHHHHHHHhc
Confidence 456789999998753 5788899999999998851 35799996543 68999999999998875
No 125
>TIGR01825 gly_Cac_T_rel pyridoxal phosphate-dependent acyltransferase, putative. This model represents an enzyme subfamily related to three known enzymes; it appears closest to glycine C-acteyltransferase, shows no overlap with it in species distribution, and may share that function. The three closely related enzymes are glycine C-acetyltransferase (2-amino-3-ketobutyrate coenzyme A ligase), 5-aminolevulinic acid synthase, and 8-amino-7-oxononanoate synthase. All transfer the R-group (acetyl, succinyl, or 6-carboxyhexanoyl) from coenzyme A to an amino acid (Gly, Gly, Ala, respectively), with release of CO2 for the latter two reactions.
Probab=99.89 E-value=1.1e-21 Score=167.04 Aligned_cols=219 Identities=16% Similarity=0.243 Sum_probs=153.8
Q ss_pred ccCCCChhh--hcCC---CCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccc--cCccCccccccc
Q psy6548 6 PVKSKQVPA--KLKS---NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTG--LGRTGKLLAIHY 78 (242)
Q Consensus 6 ~~~~~d~~~--~~~~---~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~--~~~~g~~~~~~~ 78 (242)
.+++.|+++ +.+. +.++++|+++++++++|.+.+ +++|.++|++||+++|+||+|+. +++.+.+ ....
T Consensus 143 ~~~~~d~~~l~~~l~~~~~~~~~~v~~~~v~~~tG~~~~----~~~i~~l~~~~~~~li~De~~~~~~~~~~~~~-~~~~ 217 (385)
T TIGR01825 143 IYKHADMDDLDRVLRENPSYGKKLIVTDGVFSMDGDVAP----LPEIVELAERYGAVTYVDDAHGSGVMGEAGRG-TVHH 217 (385)
T ss_pred EeCCCCHHHHHHHHHhhccCCCeEEEEecCCcCCCCccC----HHHHHHHHHHhCCEEEEECcccccCcCCCCCc-cHhh
Confidence 355666665 3333 247899999999999997776 89999999999999999999964 3333321 1222
Q ss_pred CCCCCC----EEEeeccccCCccchheeEeChhhhhccCCCCCCC--CCCCCHHHHHHHHHHHHHHHh-ccHHHHHHHHH
Q psy6548 79 EDVRPD----IVILGKALSGGLYPISAVLADDEVMGTLVPGTHGS--TYGGNPLACKLAMTALDVILE-ENMIENAYKMG 151 (242)
Q Consensus 79 ~~~~~~----~~~~sK~~~~g~~~~g~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~a~a~l~~~~~-~~~~~~~~~~~ 151 (242)
+++.++ +.++||+++ .+.||+++++++++.+......+ +...++..++++.++++.+.. .+..+++++++
T Consensus 218 ~~~~~~~~i~~~s~sK~~~---~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~ 294 (385)
T TIGR01825 218 FGLEDKVDIQVGTLSKAIG---VVGGYAAGHKELIEYLKNRARPFLFSTAQPPAVVAALAAAVDELQRSPELMERLWDNT 294 (385)
T ss_pred cCCCcCCcEEEEeccHHhh---cCCCEEecCHHHHHHHHHhCccccccCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 333333 345999997 34588888988888775432212 123456777777888876643 45678888899
Q ss_pred HHHHHHHHhhcCCCCCCeEeeeceeEEEEecCCchhHHHHHHHHHHCCceecc-------CCCCEEEEeccCcCCHHHHH
Q psy6548 152 EIFRSELRSRLSPDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKP-------ISNNIIRLSPALNITEQELR 224 (242)
Q Consensus 152 ~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~-------~~~~~lR~~~~~~~t~e~i~ 224 (242)
+++++.| +.++-.+. .+.+.++++.++.. .+..++++.|+++||.+.+ .+..++|+++++.+++++++
T Consensus 295 ~~l~~~L-~~~g~~~~---~~~~~~~~~~~~~~-~~~~~~~~~L~~~gi~v~~~~~~~~~~~~~~iRi~~~~~~~~e~i~ 369 (385)
T TIGR01825 295 RFFKAGL-GKLGYDTG---GSETPITPVVIGDE-KAAQEFSRRLFDEGIFAQSIVFPTVPRGTARIRNIPTAEHTKDDLD 369 (385)
T ss_pred HHHHHHH-HHcCCCCC---CCCCCEEEEEECCH-HHHHHHHHHHHHCCcEEcccCCCCCCCCCceEEEEEcCCCCHHHHH
Confidence 9999999 66542211 12234555555443 3567899999999999853 23478999999999999999
Q ss_pred HHHHHHHHHHHHH
Q psy6548 225 EGLDIIINTINTM 237 (242)
Q Consensus 225 ~~~~~l~~~l~~~ 237 (242)
+++++|+++++++
T Consensus 370 ~~~~~l~~~~~~~ 382 (385)
T TIGR01825 370 QALDAYEKVGKEL 382 (385)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999988653
No 126
>TIGR03540 DapC_direct LL-diaminopimelate aminotransferase. This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia, so it seems quite reasonable that these enzymes catalyze the same transformation.
Probab=99.89 E-value=4.7e-22 Score=169.12 Aligned_cols=206 Identities=13% Similarity=0.187 Sum_probs=143.9
Q ss_pred CCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCc-ccccccC-CCCCC---EEEeecccc
Q psy6548 19 NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGK-LLAIHYE-DVRPD---IVILGKALS 93 (242)
Q Consensus 19 ~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~-~~~~~~~-~~~~~---~~~~sK~~~ 93 (242)
..+++++++++++|++| ...+.+.+++|+++|++||+++|+||+|.++...+. ....... +.... +.+|||.||
T Consensus 162 ~~~~~~v~i~~P~NPtG-~~~~~~~~~~i~~~a~~~~~~ii~De~y~~l~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~g 240 (383)
T TIGR03540 162 AKKAKLMFINYPNNPTG-AVAPLKFFKELVEFAKEYNIIVCHDNAYSEITFDGYKAPSFLEVDGAKDVGIEFHSLSKTYN 240 (383)
T ss_pred cccceEEEEeCCCCCcC-ccCCHHHHHHHHHHHHHcCEEEEEecchhhhccCCCCCcCcccCCCcccCEEEEEecccccC
Confidence 45788888888899999 456778899999999999999999999987643332 1111111 11122 334999997
Q ss_pred -CCccchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHHhhcCCCCCCeE
Q psy6548 94 -GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILE--ENMIENAYKMGEIFRSELRSRLSPDIVPVV 170 (242)
Q Consensus 94 -~g~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~--~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~ 170 (242)
+| +|+||+++++++++.+.........+.+.+++.++.++++.... ++..+.++++++.+.+.| +..+ +....
T Consensus 241 ~~G-lRiG~~i~~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L-~~~~--~~~~~ 316 (383)
T TIGR03540 241 MTG-WRIGMAVGNADLIAGLGKVKTNVDSGVFQAIQYAAIAALNGPQDVVKEIRKIYQRRRDLLLEAL-KKIG--IDVEK 316 (383)
T ss_pred Ccc-ceeeEEeCCHHHHHHHHHHHHhcccCCChHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHH-HhCC--CEecC
Confidence 89 99999999999888776532222334455667666666653211 234566777788888888 5543 22223
Q ss_pred eeeceeEEEEecCCchhHHHHHHHHH-HCCceeccC------CCCEEEEeccCcCCHHHHHHHHHHHHH
Q psy6548 171 RGKGLLNAIVLDKSILEVYDVCIKMK-DAGLVTKPI------SNNIIRLSPALNITEQELREGLDIIIN 232 (242)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~l~-~~gi~~~~~------~~~~lR~~~~~~~t~e~i~~~~~~l~~ 232 (242)
+..|+++|+.++.. .+..+++++|+ ++||.+.++ +.+++|+++ ..+++++++++++|++
T Consensus 317 ~~~~~~~~~~l~~~-~~~~~~~~~ll~~~gi~v~~g~~f~~~~~~~~Ris~--~~~~~~l~~~l~~l~~ 382 (383)
T TIGR03540 317 PKATFYVWVPVPEG-YTSAEFAARLLEETGVVVTPGVGFGEYGEGYIRISL--TVPDERLEEAVARIKK 382 (383)
T ss_pred CCcceEEEEECCCC-CCHHHHHHHHHHHCCEEEecchhhCccCCCeEEEEe--cCCHHHHHHHHHHHhh
Confidence 34578899998764 56788999876 679999875 257899995 4678888888888754
No 127
>PRK08960 hypothetical protein; Provisional
Probab=99.89 E-value=1.2e-21 Score=166.89 Aligned_cols=210 Identities=13% Similarity=0.137 Sum_probs=147.6
Q ss_pred CCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEE---eecccc-
Q psy6548 18 SNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVI---LGKALS- 93 (242)
Q Consensus 18 ~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~---~sK~~~- 93 (242)
.+.+++++++..++|++|.++ +.+.+++|+++|++||+++|+||+|.++...+... ......+++++ |||.++
T Consensus 162 ~~~~~~~i~i~~p~NPtG~~~-~~~~~~~l~~~~~~~~~~li~De~Y~~~~~~~~~~--~~~~~~~~vi~~~S~SK~~g~ 238 (387)
T PRK08960 162 WNADTVGALVASPANPTGTLL-SRDELAALSQALRARGGHLVVDEIYHGLTYGVDAA--SVLEVDDDAFVLNSFSKYFGM 238 (387)
T ss_pred hCccceEEEEECCCCCCCcCc-CHHHHHHHHHHHHHcCCEEEEEccccccccCCCCC--ChhhccCCEEEEeecccccCC
Confidence 344566777777889999554 67889999999999999999999998764322211 11233445544 899998
Q ss_pred CCccchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHH-H--hccHHHHHHHHHHHHHHHHHhhcCCCCCCeE
Q psy6548 94 GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVI-L--EENMIENAYKMGEIFRSELRSRLSPDIVPVV 170 (242)
Q Consensus 94 ~g~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~-~--~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~ 170 (242)
+| +|+||+++++++++.+.......+.+.+.+.+.++.++++.. . -+...+.++++++.+.+.| +.++... ...
T Consensus 239 ~G-lRiG~~~~~~~~~~~~~~~~~~~~~~~s~~~q~a~~~~l~~~~~~~l~~~~~~~~~~~~~l~~~L-~~~~~~~-~~~ 315 (387)
T PRK08960 239 TG-WRLGWLVAPPAAVPELEKLAQNLYISASTPAQHAALACFEPETLAILEARRAEFARRRDFLLPAL-RELGFGI-AVE 315 (387)
T ss_pred cc-cEEEEEEcCHHHHHHHHHHHhhhccCCCHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHH-HhcCCcC-CcC
Confidence 89 999999999998887765444445566778877777666421 0 1234556677777788888 5544211 123
Q ss_pred eeeceeEEEEecCCchhHHHHHHHHH-HCCceeccC-------CCCEEEEeccCcCCHHHHHHHHHHHHHHHH
Q psy6548 171 RGKGLLNAIVLDKSILEVYDVCIKMK-DAGLVTKPI-------SNNIIRLSPALNITEQELREGLDIIINTIN 235 (242)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~l~-~~gi~~~~~-------~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~ 235 (242)
+..|+++|++++....+..++++.|. ++||.+.|+ ..+++|+++. .+.+++++++++|.+.+.
T Consensus 316 p~g~~f~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~iRi~~~--~~~~~l~~al~~l~~~~~ 386 (387)
T PRK08960 316 PQGAFYLYADISAFGGDAFAFCRHFLETEHVAFTPGLDFGRHQAGQHVRFAYT--QSLPRLQEAVERIARGLR 386 (387)
T ss_pred CCeeEEEEEeccccCCCHHHHHHHHHHhCCEEEcCchHhCCCCCCCeEEEEec--CCHHHHHHHHHHHHHHHh
Confidence 45688999998752135678888876 579999875 2468999965 377889999998887664
No 128
>PLN00143 tyrosine/nicotianamine aminotransferase; Provisional
Probab=99.89 E-value=1.8e-21 Score=166.81 Aligned_cols=224 Identities=14% Similarity=0.163 Sum_probs=144.3
Q ss_pred Chhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCccc-ccccCCCCCCEEE-
Q psy6548 11 QVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLL-AIHYEDVRPDIVI- 87 (242)
Q Consensus 11 d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~-~~~~~~~~~~~~~- 87 (242)
|+++ +.+.+.+++.+++..++|++|. +.+.+.+++|+++|++|+++||+||+|.++...+... ....+.....+++
T Consensus 159 d~~~l~~~~~~~~~~~~~~nP~NPTG~-~~s~~~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~vi~~ 237 (409)
T PLN00143 159 DLDAVEAIADENTIAMVIINPGNPCGS-VYSYEHLNKIAETARKLGILVIADEVYGHIVFGSKPFVPMGLFASIVPVITL 237 (409)
T ss_pred CHHHHHHhcccCCEEEEEECCCCCCCC-ccCHHHHHHHHHHHHHcCCeEEEEccccccccCCCCCcchhhhcccCcEEEE
Confidence 3455 4333455666666677999994 5577889999999999999999999998875443221 1111221223333
Q ss_pred --eecccc-CCccchheeEeC-h-hhh------hccCCCCCCCCCCCCHHHHHHHHHHHHHH-H--hccHHHHHHHHHHH
Q psy6548 88 --LGKALS-GGLYPISAVLAD-D-EVM------GTLVPGTHGSTYGGNPLACKLAMTALDVI-L--EENMIENAYKMGEI 153 (242)
Q Consensus 88 --~sK~~~-~g~~~~g~~~~~-~-~~~------~~l~~~~~~~~~~~~~~~~~~a~a~l~~~-~--~~~~~~~~~~~~~~ 153 (242)
|||.|+ +| +|+||++++ + .++ +.+........+ .+.+++.++.++++.. . -++..+.+++.++.
T Consensus 238 ~SfSK~f~~pG-lRvG~~v~~~p~~~~~~~~~~~~~~~~~~~~~~-~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~ 315 (409)
T PLN00143 238 GSISKRWMIPG-WGLGWLVTCDPSGLLQICEIADSIKKALNPAPF-PPTFIQAAIPEILEKTTEDFFSKTINILRAALAF 315 (409)
T ss_pred ccchhhcCCCc-cceEEEEeeCchhhhhhHHHHHHHHHHHhccCC-CCchHHHHHHHHHhcChHHHHHHHHHHHHHHHHH
Confidence 899987 89 999999983 3 332 222221111222 3667777766666521 1 12345666666777
Q ss_pred HHHHHHhhcCCCCCCeEeeeceeEEEEecCC---c-hhHHHHHH-HHHHCCceeccC----CCCEEEEeccCcCCHHHHH
Q psy6548 154 FRSELRSRLSPDIVPVVRGKGLLNAIVLDKS---I-LEVYDVCI-KMKDAGLVTKPI----SNNIIRLSPALNITEQELR 224 (242)
Q Consensus 154 l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~-~l~~~gi~~~~~----~~~~lR~~~~~~~t~e~i~ 224 (242)
+.+.| +.++.......+..|+++|++++.. . .+..+++. .+.++||.+.|+ ..+++|+++ ..++++++
T Consensus 316 ~~~~L-~~~~~~~~~~~p~gg~f~w~~l~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~~iRi~~--~~~~~~l~ 392 (409)
T PLN00143 316 CYDKL-KEIPCIMCPQKAEGAFFALVKLNLLLLEDIEDDMEFCLKLAKEESLIILPGVTVGLKNWLRITF--AVEQSSLE 392 (409)
T ss_pred HHHHH-hcCCCCCCCCCCCeeEEEEEecchhhcCCCCCHHHHHHHHHHhCCEEEeCccccCCCCeEEEEE--cCCHHHHH
Confidence 77777 5553211122345689999998741 0 13455554 557889999986 357899995 46789999
Q ss_pred HHHHHHHHHHHHHhhh
Q psy6548 225 EGLDIIINTINTMAAK 240 (242)
Q Consensus 225 ~~~~~l~~~l~~~~~~ 240 (242)
+++++|.+.+++..++
T Consensus 393 ~al~rl~~~l~~~~~~ 408 (409)
T PLN00143 393 DGLGRLKSFCGRHAKK 408 (409)
T ss_pred HHHHHHHHHHHHhccC
Confidence 9999999999876654
No 129
>TIGR00858 bioF 8-amino-7-oxononanoate synthase. This model represents 8-amino-7-oxononanoate synthase, the BioF protein of biotin biosynthesis. This model is based on a careful phylogenetic analysis to separate members of this family from 2-amino-3-ketobutyrate and other related pyridoxal phosphate-dependent enzymes. In several species, including Staphylococcus and Coxiella, a candidate 8-amino-7-oxononanoate synthase is confirmed by location in the midst of a biotin biosynthesis operon but scores below the trusted cutoff of this model.
Probab=99.89 E-value=1.3e-21 Score=164.92 Aligned_cols=215 Identities=16% Similarity=0.233 Sum_probs=153.0
Q ss_pred ccccCCCChhh--hcCCC---CCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEecccccc--CccCccccc
Q psy6548 4 QFPVKSKQVPA--KLKSN---PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGL--GRTGKLLAI 76 (242)
Q Consensus 4 ~~~~~~~d~~~--~~~~~---~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~--~~~g~~~~~ 76 (242)
+..++..|++. +.+.+ .++++++++++++++|...+ +++|.++|++||+++|+||+|..+ +..+.. ..
T Consensus 124 ~~~~~~~d~~~l~~~~~~~~~~~~~~v~~~~~~~~~G~~~~----~~~i~~l~~~~~~~li~De~~~~~~~~~~~~~-~~ 198 (360)
T TIGR00858 124 VRRYRHNDVEHLERLLEKNRGERRKLIVTDGVFSMDGDIAP----LPQLVALAERYGAWLMVDDAHGTGVLGEDGRG-TL 198 (360)
T ss_pred eEEecCCCHHHHHHHHHHcccCCCeEEEEeCCccCCCCCcC----HHHHHHHHHHcCcEEEEECcccccCcCCCCCc-hH
Confidence 44567777777 44433 36899999999999996665 899999999999999999999632 222111 12
Q ss_pred ccCCCCC---C--EEEeeccccCCccchheeEeChhhhhccCCCCCCC--CCCCCHHHHHHHHHHHHHHHh-ccHHHHHH
Q psy6548 77 HYEDVRP---D--IVILGKALSGGLYPISAVLADDEVMGTLVPGTHGS--TYGGNPLACKLAMTALDVILE-ENMIENAY 148 (242)
Q Consensus 77 ~~~~~~~---~--~~~~sK~~~~g~~~~g~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~a~a~l~~~~~-~~~~~~~~ 148 (242)
..+++.+ + +.++||+|++ +.||+++++++++.+.+..... +.+.++..++++.++++.++. +...++++
T Consensus 199 ~~~~~~~~~~~i~i~s~sK~~~~---~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~ 275 (360)
T TIGR00858 199 EHFGLKPEPVDIQVGTLSKALGS---YGAYVAGSQALIDYLINRARTLIFSTALPPAVAAAALAALELIQEEPWRREKLL 275 (360)
T ss_pred HhcCCCccCCcEEEEechhhhhc---cCcEEEcCHHHHHHHHHhCccceecCCCCHHHHHHHHHHHHHHhhCHHHHHHHH
Confidence 2333322 2 3448999983 3488989888887765432222 223456666677778876654 35678899
Q ss_pred HHHHHHHHHHHhhcCCCCCCeEeeeceeEEEEecCCchhHHHHHHHHHHCCceeccC-------CCCEEEEeccCcCCHH
Q psy6548 149 KMGEIFRSELRSRLSPDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPI-------SNNIIRLSPALNITEQ 221 (242)
Q Consensus 149 ~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~-------~~~~lR~~~~~~~t~e 221 (242)
++++++.+.| ++++... .+..+.++|+.++.. .+..+++++|.++||++.+. +++++|++++..++++
T Consensus 276 ~~~~~l~~~L-~~~~~~~---~~~~~~~~~~~~~~~-~~~~~~~~~l~~~gI~v~~~~~~~~~~~~~~iRis~~~~~~~~ 350 (360)
T TIGR00858 276 ALIARLRAGL-EALGFTL---MPSCTPIVPVIIGDN-ASALALAEELQQQGIFVGAIRPPTVPAGTSRLRLTLSAAHTPG 350 (360)
T ss_pred HHHHHHHHHH-HHcCCcc---CCCCCCEEEEEeCCH-HHHHHHHHHHHHCCeeEeeeCCCCCCCCCceEEEEEcCCCCHH
Confidence 9999999999 6664211 234567888888654 46788999999999999642 3468999999999999
Q ss_pred HHHHHHHHHH
Q psy6548 222 ELREGLDIII 231 (242)
Q Consensus 222 ~i~~~~~~l~ 231 (242)
++++++++|+
T Consensus 351 ~i~~~l~~l~ 360 (360)
T TIGR00858 351 DIDRLAEALK 360 (360)
T ss_pred HHHHHHHhhC
Confidence 9999998763
No 130
>PLN02187 rooty/superroot1
Probab=99.89 E-value=1.1e-21 Score=170.05 Aligned_cols=224 Identities=16% Similarity=0.134 Sum_probs=146.2
Q ss_pred hhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCccc-ccccCCCCCCEEE--
Q psy6548 12 VPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLL-AIHYEDVRPDIVI-- 87 (242)
Q Consensus 12 ~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~-~~~~~~~~~~~~~-- 87 (242)
+++ +...+.+++++++..++|++| .+.+.+.+++|+++|++||++||+||+|.++...+..+ ....+.-...+++
T Consensus 194 ~~~l~~~~~~~~~~v~i~nP~NPTG-~v~s~e~l~~i~~~a~~~~i~iI~DE~Y~~l~f~~~~~~s~~~~~~~~~vi~l~ 272 (462)
T PLN02187 194 LEGIEAIADENTVAMVVINPNNPCG-NVYSHDHLKKVAETARKLGIMVISDEVYDRTIFGDNPFVSMGKFASIVPVLTLA 272 (462)
T ss_pred HHHHHHhcCCCcEEEEEeCCCCCCC-CccCHHHHHHHHHHHHHCCCEEEEeccccccccCCCCceeHHHhccCCcEEEEe
Confidence 444 444455677788877889999 55678889999999999999999999998864433221 1111111112333
Q ss_pred -eecccc-CCccchheeEeC-hh-h---hhccCCCCCCCCC--CCCHHHHHHHHHHHHHHHh---ccHHHHHHHHHHHHH
Q psy6548 88 -LGKALS-GGLYPISAVLAD-DE-V---MGTLVPGTHGSTY--GGNPLACKLAMTALDVILE---ENMIENAYKMGEIFR 155 (242)
Q Consensus 88 -~sK~~~-~g~~~~g~~~~~-~~-~---~~~l~~~~~~~~~--~~~~~~~~~a~a~l~~~~~---~~~~~~~~~~~~~l~ 155 (242)
|||.|+ +| +|+||++++ ++ + ++.+........+ +.+.+++.++.++++.... +...+.++++++.+.
T Consensus 273 SfSK~f~~pG-lRiG~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~a~~~~L~~~~~~~l~~~~~~l~~~r~~l~ 351 (462)
T PLN02187 273 GISKGWVVPG-WKIGWIALNDPEGVFETTKVLQSIKQNLDVTPDPATIIQAALPAILEKADKNFFAKKNKILKHNVDLVC 351 (462)
T ss_pred cchhhcCCcc-ceeEEEEecCchhHHHHHHHHHHHHHhccccCCCCHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHH
Confidence 899988 89 999999974 32 2 2233322122222 3467788777777652111 234566777788888
Q ss_pred HHHHhhcCCCCCCeEeeeceeEEEEecCC---c-hhHHHHH-HHHHHCCceeccC----CCCEEEEeccCcCCHHHHHHH
Q psy6548 156 SELRSRLSPDIVPVVRGKGLLNAIVLDKS---I-LEVYDVC-IKMKDAGLVTKPI----SNNIIRLSPALNITEQELREG 226 (242)
Q Consensus 156 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~-~~l~~~gi~~~~~----~~~~lR~~~~~~~t~e~i~~~ 226 (242)
+.| +.++.......+..|+++|+.++.. . .+..+++ +.+.++||.+.|+ ..+++|++ +..++++++++
T Consensus 352 ~~L-~~~~~~~~~~~P~gg~fl~~~l~~~~~~~~~~~~~~~~~ll~~~gV~v~pG~~fg~~~~iRis--~~~~~e~l~~a 428 (462)
T PLN02187 352 DRL-KDIPCVVCPKKPESCTYLLTKLELSLMDNIKDDIDFCVKLAREENLVFLPGDALGLKNWMRIT--IGVEAHMLEDA 428 (462)
T ss_pred HHH-hhCCCCcCCCCCCEeEEEEeecChhhCCCCCCHHHHHHHHHhhCCEEEECccccCCCCeEEEE--eCCCHHHHHHH
Confidence 888 5554221122344578888876531 0 1244454 4557889999986 35899999 45678999999
Q ss_pred HHHHHHHHHHHhhh
Q psy6548 227 LDIIINTINTMAAK 240 (242)
Q Consensus 227 ~~~l~~~l~~~~~~ 240 (242)
+++|.+.+++..++
T Consensus 429 l~rL~~~l~~~~~~ 442 (462)
T PLN02187 429 LERLKGFCTRHAKK 442 (462)
T ss_pred HHHHHHHHHHhhhc
Confidence 99999999877654
No 131
>COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]
Probab=99.89 E-value=1.1e-21 Score=169.60 Aligned_cols=220 Identities=19% Similarity=0.187 Sum_probs=162.8
Q ss_pred hcCCCCCEEEEEEcc-cccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCccc-ccccC---CCCCCEEEee
Q psy6548 15 KLKSNPNICAFMVEP-IQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLL-AIHYE---DVRPDIVILG 89 (242)
Q Consensus 15 ~~~~~~~~~~i~~e~-~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~-~~~~~---~~~~~~~~~s 89 (242)
+.+..++++++++.| .|||+|.++ +.+.-++|.++|++||++||.||.|..|...+.+. +...+ +...-+.+||
T Consensus 220 ~~~~~~~~k~~y~~P~~qNPtG~tm-s~~rR~~Ll~lA~~~~~~IIEDD~y~el~~~~~p~~~l~~ld~~~rViy~gSFS 298 (459)
T COG1167 220 EALAQWKPKAVYVTPTFQNPTGVTM-SLERRKALLALAEKYDVLIIEDDYYGELRYDGPPPPPLKALDAPGRVIYLGSFS 298 (459)
T ss_pred HHHhhcCCcEEEECCCCCCCCCCcc-CHHHHHHHHHHHHHcCCeEEeeCcchhhhcCCCCCCChHhhCCCCCEEEEeeeh
Confidence 455567899999999 588888555 56789999999999999999999998875554322 11222 2222244599
Q ss_pred ccccCCccchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHH--Hh--ccHHHHHHHHHHHHHHHHHhhcCCC
Q psy6548 90 KALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVI--LE--ENMIENAYKMGEIFRSELRSRLSPD 165 (242)
Q Consensus 90 K~~~~g~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~--~~--~~~~~~~~~~~~~l~~~l~~~l~~~ 165 (242)
|.+.+| +|+||+++++++++.+.......+.+.+.+.+.+....+... .. ..++..++++++.+.+.|++.++..
T Consensus 299 K~l~Pg-lRlG~vv~p~~~~~~~~~~k~~~~~~~s~~~Q~~la~~l~~G~~~~hl~~lR~~y~~rr~~l~~~L~~~~~~~ 377 (459)
T COG1167 299 KTLAPG-LRLGYVVAPPELIEKLLRLKQAADLGPSSLSQAALAAFLLSGHYDRHLRRLRREYARRRDALLEALAEYLPEL 377 (459)
T ss_pred hhcccc-cceeeeeCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 999999 999999999999999887767777788888876544434311 11 2244555556666666663333323
Q ss_pred CCCeEeeeceeEEEEecCCchhHHHHHHHHHHCCceecc-C--------CCCEEEEeccCcCCHHHHHHHHHHHHHHHHH
Q psy6548 166 IVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKP-I--------SNNIIRLSPALNITEQELREGLDIIINTINT 236 (242)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~-~--------~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~ 236 (242)
..+..+..|+++|++++.. .+..++.+.+.++|+.+.+ + ..+++|++++.. +++++++++++|.+++.+
T Consensus 378 ~~~~~p~gG~flwl~l~~~-~~~~~l~~~a~~~gv~i~~~g~~f~~~~~~~~~~Rl~~s~~-~~e~i~~gi~~l~~~~~~ 455 (459)
T COG1167 378 ATWTRPEGGLFLWLELPEG-IDARELLAAALEKGVVVTPLGSAFSADGDPRNGLRLSFSSP-SEEEIEEGIKRLAALLRE 455 (459)
T ss_pred eeeecCCceEEEEEEcCCC-CCHHHHHHHHHHCCCEEEcCCccccCCCCCCCeEEEEcCCC-CHHHHHHHHHHHHHHHHH
Confidence 3445566699999999998 7899999999999999987 3 245899998766 688999999999999887
Q ss_pred Hh
Q psy6548 237 MA 238 (242)
Q Consensus 237 ~~ 238 (242)
..
T Consensus 456 ~~ 457 (459)
T COG1167 456 AA 457 (459)
T ss_pred Hh
Confidence 54
No 132
>PRK12414 putative aminotransferase; Provisional
Probab=99.89 E-value=8.4e-22 Score=167.60 Aligned_cols=211 Identities=17% Similarity=0.174 Sum_probs=145.4
Q ss_pred hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCccc-ccc-cCCCCCCEEE---ee
Q psy6548 15 KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLL-AIH-YEDVRPDIVI---LG 89 (242)
Q Consensus 15 ~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~-~~~-~~~~~~~~~~---~s 89 (242)
+...+++++++++++++|++|.+ .+++.+++|+++|++||+++|+||+|.++...+... ... ..+...++++ ||
T Consensus 156 ~~~l~~~~~~v~i~~p~NPTG~~-~s~~~~~~i~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~i~~~SfS 234 (384)
T PRK12414 156 AAAITPRTRMIIVNTPHNPSATV-FSAADLARLAQLTRNTDIVILSDEVYEHVVFDGARHHSMARHRELAERSVIVSSFG 234 (384)
T ss_pred HhhcCcccEEEEEcCCCCCCCcC-CCHHHHHHHHHHHHHCCeEEEEhhhhhhccCCCCCccCcccCcCccCcEEEEeccc
Confidence 33334578889999999999964 467889999999999999999999998764333211 111 1122223333 99
Q ss_pred cccc-CCccchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHhhcCCCCC
Q psy6548 90 KALS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILE-ENMIENAYKMGEIFRSELRSRLSPDIV 167 (242)
Q Consensus 90 K~~~-~g~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~-~~~~~~~~~~~~~l~~~l~~~l~~~~~ 167 (242)
|.|+ +| +|+||+++++++++.+........++.+.+++.++.++++.... ....+.++++++.+.+.| +..+ +.
T Consensus 235 K~~~~pG-lRiG~~v~~~~l~~~l~~~~~~~~~~~s~~~q~a~~~~l~~~~~~~~~~~~~~~~r~~l~~~L-~~~g--~~ 310 (384)
T PRK12414 235 KSYHVTG-WRVGYCLAPAELMDEIRKVHQFMVFSADTPMQHAFAEALAEPASYLGLGAFYQRKRDLLAREL-AGSR--FE 310 (384)
T ss_pred ccccCcc-ceEEEEecCHHHHHHHHHHHhheecCCCcHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHH-HhCC--Ce
Confidence 9998 99 99999999999988877644444567777888777666542111 124566777888888888 5543 22
Q ss_pred CeEeeeceeEEEEecCC-chhHHHHH-HHHHHCCceeccCC--------CCEEEEeccCcCCHHHHHHHHHHHHH
Q psy6548 168 PVVRGKGLLNAIVLDKS-ILEVYDVC-IKMKDAGLVTKPIS--------NNIIRLSPALNITEQELREGLDIIIN 232 (242)
Q Consensus 168 ~~~~~~~~~~~~~~~~~-~~~~~~~~-~~l~~~gi~~~~~~--------~~~lR~~~~~~~t~e~i~~~~~~l~~ 232 (242)
...+..++++|++++.. ..+..+++ +.|.++||.+.|+. .+++|++.. .+++++++++++|.+
T Consensus 311 ~~~~~gg~~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~pg~~f~~~~~~~~~iRis~~--~~~~~~~~~~~rl~~ 383 (384)
T PRK12414 311 LLPSEGSFFMLARFRHFSDESDSDFVLRLIRDARVATIPLSAFYTDGTDTGLIRLSFS--KDDATLVEGARRLCS 383 (384)
T ss_pred ecCCCcceEEEEcccccCCCCHHHHHHHHHHhCCEEEecchhhcCCCCCCCEEEEEec--CCHHHHHHHHHHHhh
Confidence 22344678888877641 02344555 55668899998851 468999954 578999999999864
No 133
>PRK07683 aminotransferase A; Validated
Probab=99.89 E-value=1.9e-21 Score=165.54 Aligned_cols=211 Identities=16% Similarity=0.183 Sum_probs=145.8
Q ss_pred CCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccC-CCCCCEE---Eeecccc-
Q psy6548 19 NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYE-DVRPDIV---ILGKALS- 93 (242)
Q Consensus 19 ~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~-~~~~~~~---~~sK~~~- 93 (242)
+.+++++++..++|++|. ..+.+.+++|+++|+++|+++|+||+|.++...+.......+ +...+++ +|||.++
T Consensus 159 ~~~~~~i~i~~p~NPtG~-~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~ 237 (387)
T PRK07683 159 TEKTRCVVLPYPSNPTGV-TLSKEELQDIADVLKDKNIFVLSDEIYSELVYEQPHTSIAHFPEMREKTIVINGLSKSHSM 237 (387)
T ss_pred CcCceEEEEeCCCCCCCc-CCCHHHHHHHHHHHHHcCeEEEEecccccceeCCCcCChhhccCCcCCeEEEeeccccccC
Confidence 456788889889999995 556788999999999999999999999876433222111111 2222333 3899999
Q ss_pred CCccchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHH--hccHHHHHHHHHHHHHHHHHhhcCCCCCCeEe
Q psy6548 94 GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVIL--EENMIENAYKMGEIFRSELRSRLSPDIVPVVR 171 (242)
Q Consensus 94 ~g~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~--~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~ 171 (242)
+| +|+||+++++++++.+.........+.+.+++.++.+.++... .+...+.++++++.+.+.| +..+ +....+
T Consensus 238 pG-lRiG~i~~~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~--~~~~~~ 313 (387)
T PRK07683 238 TG-WRIGFLFAPSYLAKHILKVHQYNVTCASSISQYAALEALTAGKDDAKMMRHQYKKRRDYVYNRL-ISMG--LDVEKP 313 (387)
T ss_pred cc-ceeEEEEcCHHHHHHHHHHHHhccCCCChHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHH-HHcC--CcccCC
Confidence 99 9999999999988887653222223345667766665654221 1234556677777777877 5543 222334
Q ss_pred eeceeEEEEecCCchhHHHHHHH-HHHCCceeccC------CCCEEEEeccCcCCHHHHHHHHHHHHHHHHH
Q psy6548 172 GKGLLNAIVLDKSILEVYDVCIK-MKDAGLVTKPI------SNNIIRLSPALNITEQELREGLDIIINTINT 236 (242)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~-l~~~gi~~~~~------~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~ 236 (242)
..++++|+.++....+..++++. +.++||.+.|+ +++++|++.. .+++++++++++|.+.+++
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~Ri~~~--~~~~~~~~al~~l~~~l~~ 383 (387)
T PRK07683 314 TGAFYLFPSIGHFTMSSFDFALDLVEEAGLAVVPGSAFSEYGEGYVRLSYA--YSIETLKEGLDRLEAFLQQ 383 (387)
T ss_pred CeeEEEEEecccCCCCHHHHHHHHHHhCCEEEcCchhhCCCCCCeEEEEec--CCHHHHHHHHHHHHHHHHh
Confidence 56778888776521345667766 46789999885 3579999954 5899999999999998865
No 134
>PRK01533 histidinol-phosphate aminotransferase; Validated
Probab=99.89 E-value=4.2e-22 Score=168.20 Aligned_cols=212 Identities=14% Similarity=0.142 Sum_probs=149.5
Q ss_pred hhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCc-ccccccCCCCCCEEE--
Q psy6548 12 VPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGK-LLAIHYEDVRPDIVI-- 87 (242)
Q Consensus 12 ~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~-~~~~~~~~~~~~~~~-- 87 (242)
+++ +...+++++++++++++|++|.+. +.+.+++|+++|++++ ++|+||+|.+|...+. ..........+.+++
T Consensus 141 ~~~l~~~~~~~~~~v~i~~P~NPTG~~~-~~~~l~~l~~~~~~~~-~~iiDe~y~~~~~~~~~~~~~~~~~~~~~vi~~~ 218 (366)
T PRK01533 141 LDEISSVVDNDTKIVWICNPNNPTGTYV-NDRKLTQFIEGISENT-LIVIDEAYYEYVTAKDFPETLPLLEKHKNILVLR 218 (366)
T ss_pred HHHHHHHhCcCCcEEEEeCCCCCCCCCc-CHHHHHHHHHhCCCCC-EEEEEccHHHhhccccCcchhHHhccCCCEEEEe
Confidence 444 333345778888888999999655 6678999999998877 5778999987643221 111111122233333
Q ss_pred -eecccc-CCccchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHhhcCC
Q psy6548 88 -LGKALS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILE-ENMIENAYKMGEIFRSELRSRLSP 164 (242)
Q Consensus 88 -~sK~~~-~g~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~-~~~~~~~~~~~~~l~~~l~~~l~~ 164 (242)
|||.|+ +| +|+||+++++++++.+.... ..++.+.+++.++.++++...- +...+..++.++++.+.+ +.++
T Consensus 219 SfSK~~~l~G-lRiG~~i~~~~~~~~l~~~~--~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~r~~~~~~l-~~~g- 293 (366)
T PRK01533 219 TFSKAYGLAS-FRVGYAVGHEELIEKLNVVR--LPFNVSSLAQKAATIAFGDDEFIEEIVRVNTEGLRQYESFC-KENE- 293 (366)
T ss_pred CchHHhcChH-HHHhHHhCCHHHHHHHHHhc--CCCCcCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHH-HhCC-
Confidence 899999 99 99999999999998887632 4577888998888887753211 223444555566666666 4443
Q ss_pred CCCCeEeeeceeEEEEecCCchhHHHHHHHHHHCCceeccCCCCEEEEeccCcCCHHHHHHHHHHHHHHHHHHhhh
Q psy6548 165 DIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINTMAAK 240 (242)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~~~~ 240 (242)
+ ...++.+.++|+.++. ..++.++|.++||.+++. .+++|++ ..+.++++++++.|+++++..+++
T Consensus 294 -~-~~~~~~~nf~~~~~~~----~~~~~~~l~~~GI~Vr~~-~~~iRis---~~~~~~~~~l~~al~~~~~~~~~~ 359 (366)
T PRK01533 294 -I-PFYQSQTNFIFLPVEN----GGEIYEACAHAGFIIRPF-PNGVRIT---VGTREQNEGVISVLQQHFENKKRK 359 (366)
T ss_pred -C-ccCCCcCcEEEEeCCC----HHHHHHHHHHCCcEEccC-CCceEEe---CCCHHHHHHHHHHHHHHHHhcccc
Confidence 1 2224567889998753 467899999999999986 6789999 558899999999999988776554
No 135
>PRK09147 succinyldiaminopimelate transaminase; Provisional
Probab=99.89 E-value=1.1e-21 Score=167.60 Aligned_cols=206 Identities=14% Similarity=0.064 Sum_probs=142.6
Q ss_pred CCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCc--ccc-c---ccCCC--CCCEEE---
Q psy6548 19 NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGK--LLA-I---HYEDV--RPDIVI--- 87 (242)
Q Consensus 19 ~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~--~~~-~---~~~~~--~~~~~~--- 87 (242)
.++++++++++++||+|. +.+++.+++|+++|++|+++||+||+|.++...+. ... . ...+. ...+++
T Consensus 164 ~~~~k~i~l~nP~NPTG~-~~s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S 242 (396)
T PRK09147 164 WARTQLLFVCSPGNPTGA-VLPLDDWKKLFALSDRYGFVIASDECYSEIYFDEAAPPLGLLEAAAELGRDDFKRLVVFHS 242 (396)
T ss_pred hhccEEEEEcCCCCCcCc-cCCHHHHHHHHHHHHHcCeEEEeeccccccccCCCCCCchhhhhccccCccccccEEEEec
Confidence 347888888899999995 55788999999999999999999999987643321 111 1 01111 123333
Q ss_pred eecccc-CCccchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHHHHhhcCCC
Q psy6548 88 LGKALS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVIL-EENMIENAYKMGEIFRSELRSRLSPD 165 (242)
Q Consensus 88 ~sK~~~-~g~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~-~~~~~~~~~~~~~~l~~~l~~~l~~~ 165 (242)
|||.++ +| +|+||+++++++++.+.......+++.+++.+.++.+++..-. -....+.++++++.+.+.| +..
T Consensus 243 ~SK~~~~~G-lRiG~~~~~~~l~~~~~~~~~~~~~~~~~~~q~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~L-~~~--- 317 (396)
T PRK09147 243 LSKRSNVPG-LRSGFVAGDAALLKKFLLYRTYHGCAMPPAVQAASIAAWNDEAHVRENRALYREKFDAVTPIL-APV--- 317 (396)
T ss_pred cccccCCcc-ceeeeecCCHHHHHHHHHHhhhcccCCCHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHH-HHh---
Confidence 999987 89 9999999999988877653333345667777777665553111 1223455666666677777 332
Q ss_pred CCCeEeeeceeEEEEecCCchhHHHHHHHHH-HCCceeccCC------------CCEEEEeccCcCCHHHHHHHHHHHHH
Q psy6548 166 IVPVVRGKGLLNAIVLDKSILEVYDVCIKMK-DAGLVTKPIS------------NNIIRLSPALNITEQELREGLDIIIN 232 (242)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~gi~~~~~~------------~~~lR~~~~~~~t~e~i~~~~~~l~~ 232 (242)
.....+..|+++|++++. +..++++.|. ++||.+.|+. .+++|+++ ..+++++++++++|.+
T Consensus 318 ~~~~~p~~g~f~~~~~~~---~~~~~~~~ll~~~gv~v~pg~~f~~~~~~~~~~~~~iRi~~--~~~~~~l~~~l~rl~~ 392 (396)
T PRK09147 318 LDVQLPDAGFYLWAKVPG---DDTEFARRLYADYNVTVLPGSYLAREAHGVNPGAGRVRIAL--VAPLAECVEAAERIVD 392 (396)
T ss_pred cCCCCCCeeEEEEEECCC---CHHHHHHHHHHhCCEEEeCCccccccccCCCCCCCeEEEEe--cCCHHHHHHHHHHHHH
Confidence 122235578999999873 3567878876 6799997751 46899994 4578899999999988
Q ss_pred HHH
Q psy6548 233 TIN 235 (242)
Q Consensus 233 ~l~ 235 (242)
.++
T Consensus 393 ~~~ 395 (396)
T PRK09147 393 FCR 395 (396)
T ss_pred Hhc
Confidence 764
No 136
>PRK05942 aspartate aminotransferase; Provisional
Probab=99.88 E-value=1.6e-21 Score=166.37 Aligned_cols=213 Identities=14% Similarity=0.178 Sum_probs=145.7
Q ss_pred hhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcc-cccc-cCC---CCCCE
Q psy6548 12 VPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKL-LAIH-YED---VRPDI 85 (242)
Q Consensus 12 ~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~-~~~~-~~~---~~~~~ 85 (242)
++. +...+++++++++.+++|++| .+.+.+.+++|.++|++||+++|+||+|.++...+.. .... ..+ ....+
T Consensus 160 ~~~l~~~~~~~~k~i~l~~P~NPtG-~~~s~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~ 238 (394)
T PRK05942 160 LSSIPEEVAQQAKILYFNYPSNPTT-ATAPREFFEEIVAFARKYEIMLVHDLCYAELAFDGYQPTSLLEIPGAKDIGVEF 238 (394)
T ss_pred HHHHHHhccccceEEEEcCCCCCCC-CcCCHHHHHHHHHHHHHcCeEEEEeccchhhccCCCCCCChhhCCCccccEEEE
Confidence 444 333356889999998899999 4567788999999999999999999999876433321 1111 111 11123
Q ss_pred EEeecccc-CCccchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHHhhc
Q psy6548 86 VILGKALS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILE--ENMIENAYKMGEIFRSELRSRL 162 (242)
Q Consensus 86 ~~~sK~~~-~g~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~--~~~~~~~~~~~~~l~~~l~~~l 162 (242)
.+|||.|+ +| +|+||+++++++++.+........++.+.+++.++.++++..+. +...+.++++++.+.+.| +.+
T Consensus 239 ~SfSK~~~~~G-lRiG~i~~~~~l~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L-~~~ 316 (394)
T PRK05942 239 HTLSKTYNMAG-WRVGFVVGNRHIIQGLRTLKTNLDYGIFSALQKAAETALQLPDSYLQQVQERYRTRRDFLIQGL-GEL 316 (394)
T ss_pred ecchhccCChh-hheeeeecCHHHHHHHHHHHhhcccCCCHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHH-HHC
Confidence 34999997 89 99999999999998887644434456666777777777753222 335566777777788888 554
Q ss_pred CCCCCCeEeeeceeEEEEecCCchhHHHHHHHH-HHCCceeccC------CCCEEEEeccCcCCHHHHHHHHHHHHH
Q psy6548 163 SPDIVPVVRGKGLLNAIVLDKSILEVYDVCIKM-KDAGLVTKPI------SNNIIRLSPALNITEQELREGLDIIIN 232 (242)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~gi~~~~~------~~~~lR~~~~~~~t~e~i~~~~~~l~~ 232 (242)
+ +....+..++++|++++.. .+..++...+ .++||.+.++ +.+++|+++. .+.+.+.+++++|.+
T Consensus 317 ~--~~~~~~~~~~f~~~~~~~~-~~~~~~~~~~l~~~gV~v~~g~~f~~~~~~~iRis~~--~~~~~l~~~l~~l~~ 388 (394)
T PRK05942 317 G--WNIPPTKATMYLWVPCPVG-MGSTDFALNVLQKTGVVVTPGNAFGEGGEGYVRISLI--ADCDRLGEALDRLKQ 388 (394)
T ss_pred C--CeecCCCeeeEEEEECCCC-CCHHHHHHHHHHHCCEEEeCChhhCcCCCCeEEEEec--CCHHHHHHHHHHHHH
Confidence 3 2222334667899998764 4556676655 4789999875 3579999964 456667777766654
No 137
>PRK07309 aromatic amino acid aminotransferase; Validated
Probab=99.88 E-value=2e-21 Score=165.71 Aligned_cols=211 Identities=16% Similarity=0.195 Sum_probs=148.2
Q ss_pred CCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcc-cccccCCCCCCEE---Eeecccc-C
Q psy6548 20 PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKL-LAIHYEDVRPDIV---ILGKALS-G 94 (242)
Q Consensus 20 ~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~-~~~~~~~~~~~~~---~~sK~~~-~ 94 (242)
+++++++++.++|++| .+.+.+.+++++++|++||+++|+||+|.++...+.. ....... ..+++ +|||.++ +
T Consensus 165 ~~~~~i~l~~P~NPtG-~~~s~~~~~~l~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~-~~~~i~~~S~SK~~g~~ 242 (391)
T PRK07309 165 DKLKAVILNYPANPTG-VTYSREQIKALADVLKKYDIFVISDEVYSELTYTGEPHVSIAEYL-PDQTILINGLSKSHAMT 242 (391)
T ss_pred CCeEEEEEECCCCCCC-cCcCHHHHHHHHHHHHHcCcEEEEEccccceeeCCCCCCCHHHhc-cCCEEEEecChhhccCc
Confidence 4688999887899999 5556778999999999999999999999886443321 1111111 12222 3899998 8
Q ss_pred CccchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHHhhcCCCCCCeEee
Q psy6548 95 GLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILE--ENMIENAYKMGEIFRSELRSRLSPDIVPVVRG 172 (242)
Q Consensus 95 g~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~--~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~ 172 (242)
| +|+||+++++++++.+.........+.+.+++.++..+++.... ....+.++++++.+.+.| +..+ +....+.
T Consensus 243 G-lRvG~~v~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~--~~~~~p~ 318 (391)
T PRK07309 243 G-WRIGLIFAPAEFTAQLIKSHQYLVTAATTMAQFAAVEALTNGKDDALPMKKEYIKRRDYIIEKM-TDLG--FKIIKPD 318 (391)
T ss_pred c-ceeEEEEeCHHHHHHHHHHHhhcccCCChHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHH-HHCC--CeecCCC
Confidence 9 99999999999988887533333345677777777666653211 234566777788888888 5543 2222344
Q ss_pred eceeEEEEecCCc-hhHHHHHHHH-HHCCceeccC------CCCEEEEeccCcCCHHHHHHHHHHHHHHHHHHh
Q psy6548 173 KGLLNAIVLDKSI-LEVYDVCIKM-KDAGLVTKPI------SNNIIRLSPALNITEQELREGLDIIINTINTMA 238 (242)
Q Consensus 173 ~~~~~~~~~~~~~-~~~~~~~~~l-~~~gi~~~~~------~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~~ 238 (242)
.|+++|+.++... .+..++++.+ .++||.+.|+ +++++|+++. .+.+++++++++|++.+++++
T Consensus 319 gg~~~~~~l~~~~~~~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRi~~~--~~~~~l~~~i~~l~~~~~~~~ 390 (391)
T PRK07309 319 GAFYIFAKIPAGYNQDSFKFLQDFARKKAVAFIPGAAFGPYGEGYVRLSYA--ASMETIKEAMKRLKEYMEEHA 390 (391)
T ss_pred eeEEEEEECCCCCCCCHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEec--CCHHHHHHHHHHHHHHHHhhc
Confidence 5778888877531 2456788765 4689999876 2579999954 478899999999999887653
No 138
>PRK07568 aspartate aminotransferase; Provisional
Probab=99.88 E-value=2.6e-21 Score=165.29 Aligned_cols=220 Identities=16% Similarity=0.223 Sum_probs=152.8
Q ss_pred hhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCccc-c-cccCCCCCCEE--
Q psy6548 12 VPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLL-A-IHYEDVRPDIV-- 86 (242)
Q Consensus 12 ~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~-~-~~~~~~~~~~~-- 86 (242)
++. +...+.+++++++..++|++|. +.+.+.+++|+++|++||+++|+||+|.+|...+... . ....+..++++
T Consensus 152 ~~~l~~~~~~~~~~v~i~~p~NPtG~-~~~~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~s~~~~~~~~~~~i~~ 230 (397)
T PRK07568 152 KEEIEKLITPKTKAILISNPGNPTGV-VYTKEELEMLAEIAKKHDLFLISDEVYREFVYDGLKYTSALSLEGLEDRVIII 230 (397)
T ss_pred HHHHHHhcCccceEEEEECCCCCCCc-cCCHHHHHHHHHHHHHCCcEEEEeccchhcccCCCCccChhhcCCCcCCEEEE
Confidence 344 3444567888888888999994 5566789999999999999999999998875444211 1 11112223444
Q ss_pred -Eeecccc-CCccchheeEeC-hhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHH--hccHHHHHHHHHHHHHHHHHhh
Q psy6548 87 -ILGKALS-GGLYPISAVLAD-DEVMGTLVPGTHGSTYGGNPLACKLAMTALDVIL--EENMIENAYKMGEIFRSELRSR 161 (242)
Q Consensus 87 -~~sK~~~-~g~~~~g~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~--~~~~~~~~~~~~~~l~~~l~~~ 161 (242)
+|||.++ +| +|+||++++ +++++.+..... ..++.+.+.+.++.++++..+ -+.+.+.++++++.+.+.| +.
T Consensus 231 ~S~SK~~~~~G-~R~G~~~~~~~~~~~~~~~~~~-~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L-~~ 307 (397)
T PRK07568 231 DSVSKRYSACG-ARIGCLISKNKELIAAAMKLCQ-ARLSPPTLEQIGAAALLDTPESYFDEVREEYKKRRDILYEEL-NK 307 (397)
T ss_pred ecchhhccCCC-cceEEEecCCHHHHHHHHHHhh-ccCCCCcHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHH-hc
Confidence 3899999 79 999999874 677766543222 235667777777766665321 1235566777888888888 55
Q ss_pred cCCCCCCeEeeeceeEEEEecCCchhHHHHHHHHHH------CCceeccC---------CCCEEEEeccCcCCHHHHHHH
Q psy6548 162 LSPDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKD------AGLVTKPI---------SNNIIRLSPALNITEQELREG 226 (242)
Q Consensus 162 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~------~gi~~~~~---------~~~~lR~~~~~~~t~e~i~~~ 226 (242)
++. +....+..|+++|++++.. +..+++++|.+ +||.+.|+ +++++|+++. .++++++++
T Consensus 308 ~~~-~~~~~p~g~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~gv~v~pg~~f~~~~~~~~~~iRls~~--~~~~~~~~~ 382 (397)
T PRK07568 308 IPG-VVCEKPKGAFYIIAKLPVD--DAEDFAKWLLTDFNYNGETVMVAPASGFYATPGLGKNEIRIAYV--LNEEDLKRA 382 (397)
T ss_pred CCC-ceecCCCcceEEEEecCCC--CHHHHHHHHHhhcccccceEEEeCchHhcCCCCCCCCeEEEEEe--CCHHHHHHH
Confidence 532 2222334567889988763 56788888876 59999874 2368999954 578999999
Q ss_pred HHHHHHHHHHHhhh
Q psy6548 227 LDIIINTINTMAAK 240 (242)
Q Consensus 227 ~~~l~~~l~~~~~~ 240 (242)
+++|++++++...+
T Consensus 383 ~~~l~~~l~~~~~~ 396 (397)
T PRK07568 383 MEILKEALEKYNKR 396 (397)
T ss_pred HHHHHHHHHHhhcc
Confidence 99999999887654
No 139
>PRK09148 aminotransferase; Validated
Probab=99.88 E-value=2.7e-21 Score=165.53 Aligned_cols=213 Identities=15% Similarity=0.177 Sum_probs=151.3
Q ss_pred CCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCccc-ccccCCCCCC-E---EEeecccc
Q psy6548 19 NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLL-AIHYEDVRPD-I---VILGKALS 93 (242)
Q Consensus 19 ~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~-~~~~~~~~~~-~---~~~sK~~~ 93 (242)
..++++++++.++|++|. +.+.+.+++|.++|++||+++|+||+|.++...+... .........+ + -+|||.++
T Consensus 163 ~~~~~~v~l~~P~NPtG~-~~s~~~l~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~s~~~~~~~~~~~i~~~SfSK~~~ 241 (405)
T PRK09148 163 IPKPIALIVNYPSNPTAY-VADLDFYKDVVAFAKKHDIIILSDLAYSEIYFDGNPPPSVLQVPGAKDVTVEFTSMSKTFS 241 (405)
T ss_pred cccceEEEEeCCCCCCCc-CCCHHHHHHHHHHHHHcCeEEEEeccchhhhcCCCCCCChhhCCCccCcEEEEeccccccC
Confidence 357888888888999995 5567889999999999999999999998764322211 1111111122 2 23899999
Q ss_pred -CCccchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHHhhcCCCCCCeE
Q psy6548 94 -GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILE--ENMIENAYKMGEIFRSELRSRLSPDIVPVV 170 (242)
Q Consensus 94 -~g~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~--~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~ 170 (242)
+| +|+||+++++++++.+.......+++.+.+++.++.++++.... +...+.++++++.+.+.| +.++ .....
T Consensus 242 ~pG-lR~G~~v~~~~~i~~l~~~~~~~~~~~~~~~q~~~~~~L~~~~~~~~~~~~~~~~~r~~l~~~L-~~~~--~~~~~ 317 (405)
T PRK09148 242 MAG-WRMGFAVGNERLIAALTRVKSYLDYGAFTPIQVAATAALNGPQDCIAEMRELYKKRRDVLVESF-GRAG--WDIPP 317 (405)
T ss_pred Ccc-hheeeeeCCHHHHHHHHHHHHHhccCCChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHH-HHcC--CccCC
Confidence 99 99999999999998887543333455677777777666652111 234566777888888888 5543 22223
Q ss_pred eeeceeEEEEecCCc--hhHHHHHHHHH-HCCceeccC------CCCEEEEeccCcCCHHHHHHHHHHHHHHHHHHh
Q psy6548 171 RGKGLLNAIVLDKSI--LEVYDVCIKMK-DAGLVTKPI------SNNIIRLSPALNITEQELREGLDIIINTINTMA 238 (242)
Q Consensus 171 ~~~~~~~~~~~~~~~--~~~~~~~~~l~-~~gi~~~~~------~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~~ 238 (242)
+..|+++|+.++... .+..++.+.|. ++||.+.|+ +.+++|+++. .+.+++++++++|.+.+++..
T Consensus 318 p~~g~f~~~~l~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~~~~~Ri~~~--~~~~~l~~al~~l~~~l~~~~ 392 (405)
T PRK09148 318 PAASMFAWAPIPEAFRHLGSLEFSKLLVEKADVAVAPGVGFGEHGDGYVRIALV--ENEQRIRQAARNIKRFLSSAD 392 (405)
T ss_pred CCeeEEEEEECCCccCCCCHHHHHHHHHHhCCEEEeCchhhCCCCCCeEEEEec--CCHHHHHHHHHHHHHHHHHHH
Confidence 456789999987531 23567888876 689999885 2578999954 688999999999999887653
No 140
>PRK08912 hypothetical protein; Provisional
Probab=99.88 E-value=1.5e-21 Score=166.24 Aligned_cols=215 Identities=17% Similarity=0.221 Sum_probs=148.5
Q ss_pred hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCccc--ccccCCCCCC-EEE--ee
Q psy6548 15 KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLL--AIHYEDVRPD-IVI--LG 89 (242)
Q Consensus 15 ~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~--~~~~~~~~~~-~~~--~s 89 (242)
+...+++++++++..++|++|. ..+.+.+++|.++|++|++++|+||+|.++...+... .....+.... +++ +|
T Consensus 153 ~~~~~~~~~~v~l~~p~NPtG~-~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~S 231 (387)
T PRK08912 153 AAAFSPRTKAVLLNNPLNPAGK-VFPREELALLAEFCQRHDAVAICDEVWEHVVFDGRRHIPLMTLPGMRERTVKIGSAG 231 (387)
T ss_pred HHHhCccceEEEEeCCCCCcCc-ccCHHHHHHHHHHHHHCCeEEEEhhhhhhcccCCCCCcChhhCCCccCceEEEeech
Confidence 3333457788888888999995 5566889999999999999999999998754333211 1111122222 232 89
Q ss_pred cccc-CCccchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHHhhcCCCC
Q psy6548 90 KALS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILE--ENMIENAYKMGEIFRSELRSRLSPDI 166 (242)
Q Consensus 90 K~~~-~g~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~--~~~~~~~~~~~~~l~~~l~~~l~~~~ 166 (242)
|.++ +| +|+||+++++++++.+........++.++..+.++.+++..... ++..+.++++++.+.+.| +..+ .
T Consensus 232 K~~g~~G-lRiG~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L-~~~g--~ 307 (387)
T PRK08912 232 KIFSLTG-WKVGFVCAAPPLLRVLAKAHQFLTFTTPPNLQAAVAYGLGKPDDYFEGMRADLARSRDRLAAGL-RRIG--F 307 (387)
T ss_pred hhccCcC-ceeEEEecCHHHHHHHHHHHhhccccCChHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHH-HhCC--C
Confidence 9999 99 99999999999888876543333455666666655555531111 345677778888888888 5554 2
Q ss_pred CCeEeeeceeEEEEecCC--chhHHHHHHHHH-HCCceeccC--------CCCEEEEeccCcCCHHHHHHHHHHHHHHHH
Q psy6548 167 VPVVRGKGLLNAIVLDKS--ILEVYDVCIKMK-DAGLVTKPI--------SNNIIRLSPALNITEQELREGLDIIINTIN 235 (242)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~-~~gi~~~~~--------~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~ 235 (242)
....+..++++|+.++.. ..+..++++.|. ++||.+.|+ ..+++|+++. .+++++++++++|.+.++
T Consensus 308 ~~~~~~g~~~l~~~l~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~~~~~~~~~iRl~~~--~~~~~l~~~l~rl~~~l~ 385 (387)
T PRK08912 308 PVLPSQGTYFLTVDLAPLGLAEDDVAFCRRLVEEAGVAAIPVSAFYEEDPVTSVVRFCFA--KRDATLDEAVERLAAARR 385 (387)
T ss_pred cccCCCcceEEEecccccCCCCCHHHHHHHHHhcCCEEEecchhhCCCCCCCCEEEEEEe--CCHHHHHHHHHHHHHHHh
Confidence 222334578889888751 135778888876 579999875 1478999954 578999999999988775
Q ss_pred H
Q psy6548 236 T 236 (242)
Q Consensus 236 ~ 236 (242)
+
T Consensus 386 ~ 386 (387)
T PRK08912 386 R 386 (387)
T ss_pred c
Confidence 3
No 141
>TIGR02539 SepCysS Sep-tRNA:Cys-tRNA synthase. Aminoacylation of tRNA(Cys) with Cys, and cysteine biosynthesis in the process, happens in Methanocaldococcus jannaschii and several other archaea by misacylation of tRNA(Cys) with O-phosphoserine (Sep), followed by modification of the phosphoserine to cysteine. In some species, direct tRNA-cys aminoacylation also occurs but this pathway is required for Cys biosynthesis. Members of this protein catalyze the second step in this two step pathway, using pyridoxal phosphate and a sulfur donor to synthesize Cys from Sep while attached to the tRNA.
Probab=99.88 E-value=2.8e-21 Score=163.61 Aligned_cols=221 Identities=14% Similarity=0.121 Sum_probs=147.7
Q ss_pred cccccCCC-------Chhh--hcCCC------CCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEecccccc
Q psy6548 3 LQFPVKSK-------QVPA--KLKSN------PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGL 67 (242)
Q Consensus 3 ~~~~~~~~-------d~~~--~~~~~------~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~ 67 (242)
++..+|++ |+++ +.+.+ .++++|+++.+++++|...+ +++|.++|++||+++|+||+|+.
T Consensus 113 ~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~lv~~~~p~~~~G~~~~----l~~i~~la~~~~~~livDea~~~- 187 (370)
T TIGR02539 113 NVKEVPHTGHPEYKVDPEGYGEVIEEVEDESGKPPVLALLTHVDGEYGNLPD----AGKVAKVCREKGVPLLLNCAYTV- 187 (370)
T ss_pred EEEEEecCCcccCCcCHHHHHHHHHHhhhccCCCcEEEEEECCCCCCccccC----HHHHHHHHHHcCCeEEEECcccc-
Confidence 35567776 6777 33432 36789999999999997766 89999999999999999999973
Q ss_pred CccCcccccccCCCCCCEEE--eeccccCCccchheeEeChhhhhccCCCCCCCCCC--------CCHHHHHHHHHHHHH
Q psy6548 68 GRTGKLLAIHYEDVRPDIVI--LGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYG--------GNPLACKLAMTALDV 137 (242)
Q Consensus 68 ~~~g~~~~~~~~~~~~~~~~--~sK~~~~g~~~~g~~~~~~~~~~~l~~~~~~~~~~--------~~~~~~~~a~a~l~~ 137 (242)
+..+... . ....|+++ ++|++++| .|+||+++++++++.+......+.+. ....++.++.++++.
T Consensus 188 g~~~~~~--~--~~~~di~v~s~sK~~~~~-g~~G~l~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~ 262 (370)
T TIGR02539 188 GRMPVSA--K--EIGADFIVGSGHKSMAAS-GPCGVLGMSEEWEDIVLRKSRYSPVKEVELLGCTSRGAPIVTMMASFPH 262 (370)
T ss_pred CCcCCCH--H--HcCCCEEEeeCcccccCC-CCEEEEEECHHHHhhhcccccCCccceeeeecccccccHHHHHHHHHHH
Confidence 2212111 1 12356555 88999976 67999999999999887643322221 111244455555654
Q ss_pred HHh--ccHHHHHHHHHHHHHHHHHhhcCCCCCCeEeeeceeEEEEecCC-------chhHHHHHHHHHHCCce-eccCCC
Q psy6548 138 ILE--ENMIENAYKMGEIFRSELRSRLSPDIVPVVRGKGLLNAIVLDKS-------ILEVYDVCIKMKDAGLV-TKPISN 207 (242)
Q Consensus 138 ~~~--~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~l~~~gi~-~~~~~~ 207 (242)
..+ +...+ ..++.+++++.| ++++-......+..++++.++++.. ......+.++|.++||. ++++..
T Consensus 263 ~~~~l~~~~~-~~~~~~~l~~~L-~~~g~~~~~~~~s~t~~v~~~~~~~~~~~~~~~~~~~~~~~~L~e~GI~~ir~~~~ 340 (370)
T TIGR02539 263 VVERVKRWDE-EVKKTRWFVAEL-EDIGFIQLGQKPKEHDLVKFETPGFHEIAQKHKRRGYFLYEELKKRGIHGIRSGQT 340 (370)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHH-HhCCcEEEccCCCcCceEEEECCchhHHhhhhccccHHHHHHHHhCCCccccCCcc
Confidence 222 11222 233456788888 6665211111234567777776531 02345799999999997 777656
Q ss_pred CEEEEeccCcCCHHHHHHHHHHHHHHHHH
Q psy6548 208 NIIRLSPALNITEQELREGLDIIINTINT 236 (242)
Q Consensus 208 ~~lR~~~~~~~t~e~i~~~~~~l~~~l~~ 236 (242)
+++|++.+ .++++|++++++.|++++++
T Consensus 341 ~~iRis~~-~~t~e~i~~l~~~L~~~~~~ 368 (370)
T TIGR02539 341 KYFKLSVY-GLTKEQVEYVVDSFEEIVEE 368 (370)
T ss_pred eEEEEEec-CCCHHHHHHHHHHHHHHHHh
Confidence 79999974 57999999999999988765
No 142
>PRK07777 aminotransferase; Validated
Probab=99.88 E-value=2.3e-21 Score=165.09 Aligned_cols=217 Identities=16% Similarity=0.192 Sum_probs=148.9
Q ss_pred Chhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcc-cccccC-CCCCC-E-
Q psy6548 11 QVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKL-LAIHYE-DVRPD-I- 85 (242)
Q Consensus 11 d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~-~~~~~~-~~~~~-~- 85 (242)
|++. +...++++++|++++++|++|... +.+.+++|+++|++|++++|+||+|.++...+.. .....+ +...+ +
T Consensus 148 d~~~l~~~~~~~~~~v~l~~p~NPtG~~~-~~~~~~~l~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~i~ 226 (387)
T PRK07777 148 DLDALRAAVTPRTRALIVNSPHNPTGTVL-TAAELAAIAELAVEHDLLVITDEVYEHLVFDGARHLPLATLPGMRERTVT 226 (387)
T ss_pred CHHHHHHhcCcccEEEEEcCCCCCCCccC-CHHHHHHHHHHHHhcCcEEEEeccchhcccCCCCcccHhhCCCCcCcEEE
Confidence 3444 333345788999999999999655 6788999999999999999999999876433321 111111 11222 2
Q ss_pred -EEeecccc-CCccchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHHhh
Q psy6548 86 -VILGKALS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILE--ENMIENAYKMGEIFRSELRSR 161 (242)
Q Consensus 86 -~~~sK~~~-~g~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~--~~~~~~~~~~~~~l~~~l~~~ 161 (242)
.+|||.|+ +| +|+||+++++++++.+.......++..+.+.+.++..+++..+. +...+.++++++.+.+.| +.
T Consensus 227 ~~S~SK~~g~~G-lRiG~~~~~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L-~~ 304 (387)
T PRK07777 227 ISSAAKTFNVTG-WKIGWACGPAPLIAAVRAAKQYLTYVGGAPFQPAVAHALDHEDAWVAALRDSLQAKRDRLAAGL-AE 304 (387)
T ss_pred EeechhhccCcC-ceeEEEecCHHHHHHHHHHHhhcccCCCCHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHH-Hh
Confidence 23899999 89 99999999998888776543434555555566555555542111 234567778888888888 55
Q ss_pred cCCCCCCeEeeeceeEEEEecC-CchhHHHHHHHHH-HCCceeccCC---------CCEEEEeccCcCCHHHHHHHHHHH
Q psy6548 162 LSPDIVPVVRGKGLLNAIVLDK-SILEVYDVCIKMK-DAGLVTKPIS---------NNIIRLSPALNITEQELREGLDII 230 (242)
Q Consensus 162 l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~-~~gi~~~~~~---------~~~lR~~~~~~~t~e~i~~~~~~l 230 (242)
++ +....+..++++|+.++. ...+..++++.|. ++||.+.|+. .+++|+++ ..+++++++++++|
T Consensus 305 ~~--~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~~~~~Ri~~--~~~~~~l~~~l~~l 380 (387)
T PRK07777 305 AG--FEVHDSAGTYFLCADPRPLGYDDGTEFCRALPERVGVAAIPMSVFYDPADAWNHLVRFAF--CKRDDTLDEAIRRL 380 (387)
T ss_pred CC--CCccCCCcceEEEecccccCCCCHHHHHHHHHHhCCEEEeCchHhCCCCcCCCCeEEEEe--cCCHHHHHHHHHHH
Confidence 53 222233457888888653 1135788999997 5799997751 35899995 45799999999999
Q ss_pred HHHH
Q psy6548 231 INTI 234 (242)
Q Consensus 231 ~~~l 234 (242)
++..
T Consensus 381 ~~~~ 384 (387)
T PRK07777 381 RALR 384 (387)
T ss_pred HHHh
Confidence 8754
No 143
>PRK07590 L,L-diaminopimelate aminotransferase; Validated
Probab=99.88 E-value=3.6e-21 Score=165.05 Aligned_cols=207 Identities=14% Similarity=0.104 Sum_probs=142.7
Q ss_pred CCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCc-ccccccC-CCCCCEE---Eeecccc
Q psy6548 19 NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGK-LLAIHYE-DVRPDIV---ILGKALS 93 (242)
Q Consensus 19 ~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~-~~~~~~~-~~~~~~~---~~sK~~~ 93 (242)
+++++++++.+++||+|. +.+.+.+++|+++|++||++||+||+|.+|...+. ....... +....++ +|||.++
T Consensus 174 ~~~~k~i~l~nP~NPTG~-~~s~~~~~~l~~~a~~~~~~iI~De~Y~~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~ 252 (409)
T PRK07590 174 EEKVDIIYLCFPNNPTGT-VLTKEQLKAWVDYAKENGSLILFDAAYEAFISDPSLPHSIYEIEGARECAIEFRSFSKTAG 252 (409)
T ss_pred ccCceEEEEeCCCCCcCC-cCCHHHHHHHHHHHHHcCeEEEEEccchhhccCCCCCcchhhCCCcccceEEEecCccccC
Confidence 467888888888999995 55788999999999999999999999987643332 1111111 1111233 3999998
Q ss_pred -CCccchheeEeChhhhhccCC-----------CCCCCCC-CCCHHHHHHHHHHHHH-HH--hccHHHHHHHHHHHHHHH
Q psy6548 94 -GGLYPISAVLADDEVMGTLVP-----------GTHGSTY-GGNPLACKLAMTALDV-IL--EENMIENAYKMGEIFRSE 157 (242)
Q Consensus 94 -~g~~~~g~~~~~~~~~~~l~~-----------~~~~~~~-~~~~~~~~~a~a~l~~-~~--~~~~~~~~~~~~~~l~~~ 157 (242)
+| +|+||+++++++++.+.. ......+ +.+.+++.++.++++. .. -++..+.++++++.+.+.
T Consensus 253 ~pG-lRiG~~i~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~q~a~~~~l~~~~~~~~~~~~~~~~~~r~~l~~~ 331 (409)
T PRK07590 253 FTG-TRCAYTVVPKELKGKTSDGEGVSLNSLWNRRQSTKFNGVSYIVQRAAEAVYSPEGKAQIKELIDYYMENAKIIREG 331 (409)
T ss_pred CcC-ceeEEEEcCHHHhhhccccchhhhHHHHHHHHhhcccCcCHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 99 999999999988863210 0111222 4566777776665542 11 123456677777888888
Q ss_pred HHhhcCCCCCCeEeeeceeEEEEecCCchhHHHHHHHHH-HCCceeccC------CCCEEEEeccCcCCHHHHHHHHHHH
Q psy6548 158 LRSRLSPDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMK-DAGLVTKPI------SNNIIRLSPALNITEQELREGLDII 230 (242)
Q Consensus 158 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~gi~~~~~------~~~~lR~~~~~~~t~e~i~~~~~~l 230 (242)
| +..+ +....+..++++|++++.. .+..++++.|. ++||.+.|+ +.+++|++ +..+++++++++++|
T Consensus 332 L-~~~~--~~~~~~~g~~f~wi~~~~~-~~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRi~--~~~~~~~l~~~l~rl 405 (409)
T PRK07590 332 L-ESAG--FEVYGGVNAPYIWVKTPDG-MSSWDFFDKLLQEANVVGTPGSGFGPSGEGYFRLS--AFGSRENVLEAMERI 405 (409)
T ss_pred H-HhcC--CceecCCcceEEEEECCCC-CCHHHHHHHHHHHCCEEEeChhHhCCCCCCEEEEE--ccCCHHHHHHHHHHH
Confidence 8 5543 2222234678999999865 45678888877 469999875 24689999 456899999999999
Q ss_pred HHH
Q psy6548 231 INT 233 (242)
Q Consensus 231 ~~~ 233 (242)
.++
T Consensus 406 ~~~ 408 (409)
T PRK07590 406 KKA 408 (409)
T ss_pred Hhh
Confidence 765
No 144
>PRK02610 histidinol-phosphate aminotransferase; Provisional
Probab=99.88 E-value=1.6e-21 Score=165.41 Aligned_cols=201 Identities=16% Similarity=0.193 Sum_probs=140.9
Q ss_pred CCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEE---eecccc-CC
Q psy6548 20 PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVI---LGKALS-GG 95 (242)
Q Consensus 20 ~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~---~sK~~~-~g 95 (242)
++++++++++++||+|.++ +.+.++++.++| ++++||+||+|.+|...... ......+++++ |||.++ +|
T Consensus 167 ~~~k~i~l~~P~NPTG~~~-s~~~l~~l~~~~--~~~~iI~De~Y~~~~~~~~~---~~~~~~~~~ivi~SfSK~~g~~G 240 (374)
T PRK02610 167 PPVRVVFVVHPNSPTGNPL-TAAELEWLRSLP--EDILVVIDEAYFEFSQTTLV---GELAQHPNWVILRTFSKAFRLAA 240 (374)
T ss_pred CCceEEEEeCCCCCCCCCC-CHHHHHHHHhcc--CCcEEEEeccccccCccchH---HHHhcCCCEEEEEecchhccCcc
Confidence 6889999888999999655 667789998886 49999999999877422111 11111223333 999997 89
Q ss_pred ccchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHhhcCCCCCCeEeeec
Q psy6548 96 LYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILE-ENMIENAYKMGEIFRSELRSRLSPDIVPVVRGKG 174 (242)
Q Consensus 96 ~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~-~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~ 174 (242)
+|+||+++++++++.+.... ..++.+.+++.++.++++.... .+......+.++.+.+.| +.++. + ...+..|
T Consensus 241 -lRiG~~v~~~~l~~~l~~~~--~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~r~~l~~~L-~~~~~-~-~~~p~~g 314 (374)
T PRK02610 241 -HRVGYAIGHPELIAVLEKVR--LPYNLPSFSQLAAQLALEHRQELLAAIPEILQERDRLYQAL-QELPQ-L-RVWPSAA 314 (374)
T ss_pred -cceeeeecCHHHHHHHHHhc--CCCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHH-HhCCC-c-EeCCCcc
Confidence 99999999999988887643 3455677888877766653221 111122233355566666 44432 2 1235567
Q ss_pred eeEEEEecCCchhHHHHHHHHHHCCceeccCCCCEEEEeccCcCCHHHHHHHHHHHHHHHHHH
Q psy6548 175 LLNAIVLDKSILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINTM 237 (242)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~ 237 (242)
+++|++++.. .+..++.+.|.++||.+.+. .+++|++. . +++++++++++|++++.++
T Consensus 315 ~f~~~~l~~~-~~~~~~~~~l~~~gi~v~~~-~~~lRls~--~-~~~~~~~~l~~l~~~l~~~ 372 (374)
T PRK02610 315 NFLYLRLSQD-AALAALHQALKAQGTLVRHT-GGGLRITI--G-TPEENQRTLERLQAALTQL 372 (374)
T ss_pred eEEEEeCCCC-CCHHHHHHHHHHCCEEEEeC-CCeEEEeC--C-CHHHHHHHHHHHHHHHhhc
Confidence 8999998765 46788999999999999875 67899993 3 5678999999999988764
No 145
>PRK08361 aspartate aminotransferase; Provisional
Probab=99.88 E-value=1.8e-21 Score=165.93 Aligned_cols=219 Identities=15% Similarity=0.151 Sum_probs=149.5
Q ss_pred hhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCc-ccccccCCCCCCEE--E
Q psy6548 12 VPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGK-LLAIHYEDVRPDIV--I 87 (242)
Q Consensus 12 ~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~-~~~~~~~~~~~~~~--~ 87 (242)
+++ +...+.+++++++++++|++|. ..+.+.+++|+++|++|++++|+||+|.++...+. ............++ +
T Consensus 156 ~~~l~~~i~~~~~~v~i~~p~NPtG~-~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~i~~~s 234 (391)
T PRK08361 156 PDELLELITKRTRMIVINYPNNPTGA-TLDKEVAKAIADIAEDYNIYILSDEPYEHFLYEGAKHYPMIKYAPDNTILANS 234 (391)
T ss_pred HHHHHHhcccccEEEEEeCCCCCCCc-CcCHHHHHHHHHHHHHcCeEEEEEcccccceeCCCCCCCHhhcCCCCEEEEec
Confidence 444 3334457888888888999995 55667899999999999999999999987633221 11111111112233 3
Q ss_pred eecccc-CCccchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHh----ccHHHHHHHHHHHHHHHHHhhc
Q psy6548 88 LGKALS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILE----ENMIENAYKMGEIFRSELRSRL 162 (242)
Q Consensus 88 ~sK~~~-~g~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~----~~~~~~~~~~~~~l~~~l~~~l 162 (242)
+||.++ +| +|+||+++++++++.+.......+++.+.+.+.++.++++.... +...+.++++++.+.+.| +.+
T Consensus 235 ~SK~~~~~G-lRiG~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L-~~~ 312 (391)
T PRK08361 235 FSKTFAMTG-WRLGFVIAPEQVIKDMIKLHAYIIGNVASFVQIAGIEALRSKESWKAVEEMRKEYNERRKLVLKRL-KEM 312 (391)
T ss_pred CchhcCCcH-hhhhhhccCHHHHHHHHHHHhhhccCCChHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHHHHHH-HhC
Confidence 899999 89 99999999998888775432233455667777776666643111 234555666777777777 555
Q ss_pred CCCCCCeEeeeceeEEEEecCCchhHHHHHHHHHH-CCceeccC------CCCEEEEeccCcCCHHHHHHHHHHHHHHHH
Q psy6548 163 SPDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKD-AGLVTKPI------SNNIIRLSPALNITEQELREGLDIIINTIN 235 (242)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~gi~~~~~------~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~ 235 (242)
+. +....+..|+++|++++....+..++++.|.+ +||.+.|+ +.+++|++.. .+++++++++++|++.++
T Consensus 313 ~~-~~~~~p~g~~~~~~~l~~~~~~~~~l~~~l~~~~gv~v~pg~~f~~~~~~~iRi~~~--~~~~~l~~al~~l~~~l~ 389 (391)
T PRK08361 313 PH-IKVFEPKGAFYVFANIDETGMSSEDFAEWLLEKARVVVIPGTAFGKAGEGYIRISYA--TSKEKLIEAMERMEKALE 389 (391)
T ss_pred CC-CeecCCCEEEEEEEECCCCCCCHHHHHHHHHHhCCEEEcCchhhCCCCCCEEEEEec--CCHHHHHHHHHHHHHHHh
Confidence 32 22223345778898887522467788888874 79999875 2478999954 578899999999998876
Q ss_pred H
Q psy6548 236 T 236 (242)
Q Consensus 236 ~ 236 (242)
+
T Consensus 390 ~ 390 (391)
T PRK08361 390 E 390 (391)
T ss_pred c
Confidence 4
No 146
>PRK08636 aspartate aminotransferase; Provisional
Probab=99.88 E-value=3.1e-21 Score=165.10 Aligned_cols=211 Identities=15% Similarity=0.161 Sum_probs=146.2
Q ss_pred CCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcc-cccccCCCCCC-E---EEeecccc-
Q psy6548 20 PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKL-LAIHYEDVRPD-I---VILGKALS- 93 (242)
Q Consensus 20 ~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~-~~~~~~~~~~~-~---~~~sK~~~- 93 (242)
.++++++++.++||+| .+.+.+.+++|+++|++|+++||+||+|.++...+.. .......-..+ + .+|||.++
T Consensus 174 ~~~~~i~~~~P~NPTG-~~~s~~~~~~l~~~a~~~~~~II~De~Y~~l~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~ 252 (403)
T PRK08636 174 PKPKYVVVNFPHNPTT-ATVEKSFYERLVALAKKERFYIISDIAYADITFDGYKTPSILEVEGAKDVAVESYTLSKSYNM 252 (403)
T ss_pred CCceEEEEeCCCCCCC-ccCCHHHHHHHHHHHHHcCcEEEEeccchhhccCCCCCCChhcCCCccccEEEEEecccccCC
Confidence 4688889988899999 5567788999999999999999999999876433321 11111111122 2 23899997
Q ss_pred CCccchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHHhhcCCCCCCeEe
Q psy6548 94 GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILE--ENMIENAYKMGEIFRSELRSRLSPDIVPVVR 171 (242)
Q Consensus 94 ~g~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~--~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~ 171 (242)
+| +|+||+++++++++.+........++.+.+++.++..+++.... +.+.+.++++++.+.+.| +..+ +....+
T Consensus 253 ~G-lRiG~iv~~~~li~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L-~~~~--~~~~~p 328 (403)
T PRK08636 253 AG-WRVGFVVGNKKLVGALKKIKSWLDYGMFTPIQVAATIALDGDQSCVEEIRETYRKRRDVLIESF-ANAG--WELQKP 328 (403)
T ss_pred cc-ceeeeeeCCHHHHHHHHHHHHHhcccCChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHH-HHCC--CcccCC
Confidence 89 99999999999988876543333345555666555544431111 234556666777777777 4442 222234
Q ss_pred eeceeEEEEecCCc--hhHHHHHHHHH-HCCceeccC------CCCEEEEeccCcCCHHHHHHHHHHHHHHHHHH
Q psy6548 172 GKGLLNAIVLDKSI--LEVYDVCIKMK-DAGLVTKPI------SNNIIRLSPALNITEQELREGLDIIINTINTM 237 (242)
Q Consensus 172 ~~~~~~~~~~~~~~--~~~~~~~~~l~-~~gi~~~~~------~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~ 237 (242)
..|+++|+.++... .+..+++..+. ++||.+.|+ +++++|++.. .+++++++++++|++.++.+
T Consensus 329 ~~g~~~~~~l~~~~~~~~~~~l~~~ll~~~gV~v~pg~~f~~~~~~~iRi~~~--~~~~~l~~~~~rl~~~l~~~ 401 (403)
T PRK08636 329 RASMFVWAKIPEPARHLGSLEFSKQLLTEAKVAVSPGIGFGEYGDEYVRIALI--ENENRIRQAARNIKKFLKEL 401 (403)
T ss_pred CcceEEEEECCCccCCCCHHHHHHHHHHhCCEEEecchhhCcCCCCeEEEEec--CCHHHHHHHHHHHHHHHHhh
Confidence 57899999987531 23577887755 689999886 2578999954 68999999999999988764
No 147
>PRK06959 putative threonine-phosphate decarboxylase; Provisional
Probab=99.88 E-value=4.1e-21 Score=160.66 Aligned_cols=200 Identities=18% Similarity=0.150 Sum_probs=145.8
Q ss_pred EEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEE---eecccc-CCcc
Q psy6548 22 ICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVI---LGKALS-GGLY 97 (242)
Q Consensus 22 ~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~---~sK~~~-~g~~ 97 (242)
+..+++..++||+|.+ .+.+.++++++.|++++.++|+||+|.+|... .... ...+ .+++++ |||.|+ +| +
T Consensus 131 ~~~v~l~nPnNPTG~~-~s~~~l~~l~~~~~~~~~~vI~DEay~~~~~~-~s~~-~~~~-~~~vi~l~SfSK~~gl~G-l 205 (339)
T PRK06959 131 LTHLIVVNPNNPTAER-LPAARLLRWHAQLAARGGTLIVDEAFADTLPA-ASLA-AHTD-RPGLVVLRSVGKFFGLAG-V 205 (339)
T ss_pred CCEEEEeCCCCCCCCC-CCHHHHHHHHHHHHHcCCEEEEECCCccCCCc-ccch-hccC-CCCEEEEecChhhcCCcc-h
Confidence 3466666668999955 56677999999999999999999999887422 1111 1111 233333 999999 99 9
Q ss_pred chheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHHHHhhcCCCCCCeEeeecee
Q psy6548 98 PISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVIL-EENMIENAYKMGEIFRSELRSRLSPDIVPVVRGKGLL 176 (242)
Q Consensus 98 ~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~-~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~ 176 (242)
|+||+++++++++.+... ...++.+.+++.++.++++... .+...+.+++.++++.+.| +.++-.. ...+++
T Consensus 206 RiGy~v~~~~li~~l~~~--~~~~~vs~~~q~a~~~~L~~~~~~~~~~~~~~~~r~~l~~~L-~~~g~~~----~~~~~f 278 (339)
T PRK06959 206 RAGFVLAAPALLAALRDA--LGAWTVSGPARHAVRAAFADAAWQAAMRERLAADGARLAALL-RAHGFAV----HATPLF 278 (339)
T ss_pred heEEEecCHHHHHHHHHh--cCCCCCcHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHH-HHCCCCc----cCcceE
Confidence 999999999999988764 3356678888888887776322 1345677777888888888 6654211 124677
Q ss_pred EEEEecCCchhHHHHHHHHHHCCceeccC-CCCEEEEeccCcCCHHHHHHHHHHHHHHHHHHhh
Q psy6548 177 NAIVLDKSILEVYDVCIKMKDAGLVTKPI-SNNIIRLSPALNITEQELREGLDIIINTINTMAA 239 (242)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~l~~~gi~~~~~-~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~~~ 239 (242)
+|++++ +..++.+.|.++||.++.. ..+++|++ ...+.++++++++.|+++++.+..
T Consensus 279 ~~~~~~----~~~~l~~~l~~~GI~vr~~~~~~~lRis--i~~~~~e~~~l~~al~~~~~~~~~ 336 (339)
T PRK06959 279 SWTDDP----RAAALHAALARRGIWTRYFAPPPSVRFG--LPADEAEWQRLEDALAECVPTLAA 336 (339)
T ss_pred EEEeCC----CHHHHHHHHHhCCeEEEECCCCCeEEEE--CCCCHHHHHHHHHHHHHHHHHHhh
Confidence 788764 3568999999999999865 35689999 435888999999999998887654
No 148
>PRK05937 8-amino-7-oxononanoate synthase; Provisional
Probab=99.88 E-value=7.1e-21 Score=161.11 Aligned_cols=213 Identities=21% Similarity=0.307 Sum_probs=146.5
Q ss_pred ccccCCCChhh--hcCCC-----CCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEecccc-c-cCccCccc
Q psy6548 4 QFPVKSKQVPA--KLKSN-----PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQT-G-LGRTGKLL 74 (242)
Q Consensus 4 ~~~~~~~d~~~--~~~~~-----~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~-~-~~~~g~~~ 74 (242)
.+.|+|+|+++ +.+.+ +++.+|++++++|++|.+.| +++|.++|++||+++++||+|+ | ++..+.+.
T Consensus 119 ~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~v~~v~s~~G~i~p----l~eI~~l~~~~~~~livDea~~~G~~g~~g~g~ 194 (370)
T PRK05937 119 HQSFRHNDLDHLESLLESCRQRSFGRIFIFVCSVYSFKGTLAP----LEQIIALSKKYHAHLIVDEAHAMGIFGDDGKGF 194 (370)
T ss_pred eEEecCCCHHHHHHHHHhhhccCCCcEEEEEecCCCCCCCccC----HHHHHHHHHHcCCEEEEECCccccccCCCCCch
Confidence 45689999998 44431 35678889999999998888 9999999999999999999996 4 45554332
Q ss_pred ccccCC---CCCCEEEeeccccC-CccchheeEeChhhhhccCC--CCCCCCCCCCHHHHHHHHHHHHHHHhc--cHHHH
Q psy6548 75 AIHYED---VRPDIVILGKALSG-GLYPISAVLADDEVMGTLVP--GTHGSTYGGNPLACKLAMTALDVILEE--NMIEN 146 (242)
Q Consensus 75 ~~~~~~---~~~~~~~~sK~~~~-g~~~~g~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~a~a~l~~~~~~--~~~~~ 146 (242)
. ..++ ..+++.++||++|+ | +.+++.++..+.+.. .....+.+.+++.++++.++++.++.. ...++
T Consensus 195 ~-~~~~~~~~~~~~~tlsK~~g~~G----~~vl~~~~~~~~~~~~~~~~~~s~~~~~~~~~a~~aal~~l~~~~~~~~~~ 269 (370)
T PRK05937 195 C-HSLGYENFYAVLVTYSKALGSMG----AALLSSSEVKQDLMLNSPPLRYSTGLPPHLLISIQVAYDFLSQEGELARKQ 269 (370)
T ss_pred H-HhhCCCCCcEEEEechhhhhcCc----eEEEcCHHHHHHHHHhCCCCeecCCCCHHHHHHHHHHHHHHHhCcHHHHHH
Confidence 1 1222 22456779999983 3 234555555444331 112233346777777777888887653 24566
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCeEeeeceeEEEEecCCchhHHHHHHHHHHCCceeccC---CCCEEEEeccCcCCHHHH
Q psy6548 147 AYKMGEIFRSELRSRLSPDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPI---SNNIIRLSPALNITEQEL 223 (242)
Q Consensus 147 ~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~---~~~~lR~~~~~~~t~e~i 223 (242)
++++++++++.| ..... +....+.++. ...+.+.+.|.++||.+... ..+.+|++++..+|+||+
T Consensus 270 l~~l~~~l~~~l-~~~~~---------~~~~~i~~~~--~~~~~~~~~L~~~gi~v~~~~~~~~~~iRis~~~~~t~edi 337 (370)
T PRK05937 270 LFRLKEYFAQKF-SSAAP---------GCVQPIFLPG--ISEQELYSKLVETGIRVGVVCFPTGPFLRVNLHAFNTEDEV 337 (370)
T ss_pred HHHHHHHHHHhc-CCCCC---------CCEEEEEeCC--hhHHHHHHHHHHCCeeEEeeCCCCCCEEEEEcCCCCCHHHH
Confidence 666666666666 32111 1122344444 35678999999999988732 256899999999999999
Q ss_pred HHHHHHHHHHHHHH
Q psy6548 224 REGLDIIINTINTM 237 (242)
Q Consensus 224 ~~~~~~l~~~l~~~ 237 (242)
+++++.|+++++++
T Consensus 338 d~l~~~L~~~~~~~ 351 (370)
T PRK05937 338 DILVSVLATYLEKY 351 (370)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999998775
No 149
>PRK02731 histidinol-phosphate aminotransferase; Validated
Probab=99.88 E-value=2.7e-21 Score=163.59 Aligned_cols=212 Identities=18% Similarity=0.198 Sum_probs=147.8
Q ss_pred Chhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCc-ccccccCCCCCCEE--
Q psy6548 11 QVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGK-LLAIHYEDVRPDIV-- 86 (242)
Q Consensus 11 d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~-~~~~~~~~~~~~~~-- 86 (242)
|++. +...++++++|++++++|++|.+.+ .+.+.++++.|+ +|+++|+||+|.++...+. .......+..++++
T Consensus 143 ~~~~l~~~~~~~~~~v~l~~p~nptG~~~~-~~~l~~l~~~~~-~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~i~~ 220 (367)
T PRK02731 143 DLDAMLAAVTPRTRLVFIANPNNPTGTYLP-AEEVERFLAGVP-PDVLVVLDEAYAEYVRRKDYEDGLELVAKFPNVVVT 220 (367)
T ss_pred CHHHHHHHhCCCCcEEEEeCCCCCCCcCCC-HHHHHHHHHhCC-CCcEEEEECcHHHhccCcCcccHHHHHhhcCCEEEE
Confidence 4454 3333467889999999999996665 455666666554 5999999999976543321 11112222234444
Q ss_pred -Eeecccc-CCccchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHHHHhhcC
Q psy6548 87 -ILGKALS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVIL-EENMIENAYKMGEIFRSELRSRLS 163 (242)
Q Consensus 87 -~~sK~~~-~g~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~-~~~~~~~~~~~~~~l~~~l~~~l~ 163 (242)
++||.++ +| +|+||+++++++++.+.... .++..+.+++.++.++++... -++..+.++++++.+++.| +..+
T Consensus 221 ~S~SK~~g~~G-~RiG~l~~~~~~~~~l~~~~--~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~L-~~~g 296 (367)
T PRK02731 221 RTFSKAYGLAG-LRVGYGIAPPEIIDALNRVR--QPFNVNSLALAAAVAALDDDAFVEKSRALNAEGMAWLTEFL-AELG 296 (367)
T ss_pred eeehHhhcCcc-cceeeeeCCHHHHHHHHHcc--CCCCCCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHH-HHCC
Confidence 3899998 89 99999999999888877532 345667788877776665221 1334566667777777877 5553
Q ss_pred CCCCCeEeeeceeEEEEecCCchhHHHHHHHHHHCCceeccCC----CCEEEEeccCcCCHHHHHHHHHHHHHHHH
Q psy6548 164 PDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPIS----NNIIRLSPALNITEQELREGLDIIINTIN 235 (242)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~----~~~lR~~~~~~~t~e~i~~~~~~l~~~l~ 235 (242)
- .. .++.|+++|+.++.. .+..+++++|.++||.+.++. ++++|+++ ++.++++++++.|+++++
T Consensus 297 ~--~~-~~~~g~~~~i~~~~~-~~~~~~~~~L~~~gI~v~~~~~~~~~~~iRis~---~~~~e~~~l~~aL~~~~~ 365 (367)
T PRK02731 297 L--EY-IPSVGNFILVDFDDG-KDAAEAYQALLKRGVIVRPVAGYGLPNALRITI---GTEEENRRFLAALKEFLA 365 (367)
T ss_pred C--cc-CCCCceEEEEECCCC-CCHHHHHHHHHHCCEEEEeCCCCCCCCeEEEec---CCHHHHHHHHHHHHHHHh
Confidence 2 11 234578999998654 578899999999999998762 46899994 378999999999988764
No 150
>TIGR03539 DapC_actino succinyldiaminopimelate transaminase. This family of actinobacterial succinyldiaminopimelate transaminase enzymes (DapC) are members of the pfam00155 superfamily. Many of these genes appear adjacent to other genes encoding enzymes of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).
Probab=99.88 E-value=3.3e-21 Score=162.47 Aligned_cols=202 Identities=13% Similarity=0.129 Sum_probs=143.4
Q ss_pred CCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccc-ccc--CC-CCCCEE---Eeecc
Q psy6548 19 NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLA-IHY--ED-VRPDIV---ILGKA 91 (242)
Q Consensus 19 ~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~-~~~--~~-~~~~~~---~~sK~ 91 (242)
.++++++++++++|++|. +.+.+.+++|.++|++||+++|+||+|.++...+.... +.. .+ ....++ +|||.
T Consensus 140 ~~~~~~v~~~~p~NPtG~-~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~ 218 (357)
T TIGR03539 140 PVGPDLIWLNSPGNPTGR-VLSVDELRAIVAWARERGAVVASDECYLELGWEGRPVSILDPRVCGGDHTGLLAVHSLSKR 218 (357)
T ss_pred ccCccEEEEeCCCCCcCc-cCCHHHHHHHHHHHHHcCeEEEEecchhhhccCCCCccceecccCCCccccEEEEeccccc
Confidence 467899999999999995 55667899999999999999999999987654332211 110 01 111233 38999
Q ss_pred cc-CCccchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHHHHhhcCCCCCCe
Q psy6548 92 LS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVIL-EENMIENAYKMGEIFRSELRSRLSPDIVPV 169 (242)
Q Consensus 92 ~~-~g~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~-~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~ 169 (242)
++ +| +|+||+++++++++.+........++.+.+++.++.++++... .+...+.++++++.+.+.| +..+ ....
T Consensus 219 ~~~~G-~R~G~~i~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L-~~~g--~~~~ 294 (357)
T TIGR03539 219 SNLAG-YRAGFVAGDPALVAELLTVRKHAGLMVPAPVQAAMVAALGDDGHVAEQKARYAARRAQLKPAL-EKAG--FRID 294 (357)
T ss_pred cCCCc-eeEEEEecCHHHHHHHHHHHhhcccCCCHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHH-HHcC--CCCc
Confidence 96 88 9999999999988877654334456677788877776664311 1234566677777788888 5543 2222
Q ss_pred EeeeceeEEEEecCCchhHHHHHHHHHHCCceeccC------CCCEEEEeccCcCCHHHHHHHHHHH
Q psy6548 170 VRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPI------SNNIIRLSPALNITEQELREGLDII 230 (242)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~------~~~~lR~~~~~~~t~e~i~~~~~~l 230 (242)
.+..++++|+.++. +..++.+.|.++||.+.|+ +.+++|+++ ..+++++++++++|
T Consensus 295 ~p~~~~~~~~~~~~---~~~~~~~~l~~~gV~v~pg~~f~~~~~~~iRis~--~~~~~~i~~~~~~l 356 (357)
T TIGR03539 295 HSEAGLYLWATRGE---DAWDTVDRLAELGILVAPGDFYGPAGSQHVRVAL--TATDERIAAAVARL 356 (357)
T ss_pred CCCccEEEEEECCC---CHHHHHHHHHhCCEEECCccccCCCCCCeEEEEe--cCCHHHHHHHHHhh
Confidence 34457788887754 3567889999999999885 257999995 44789999999876
No 151
>PLN02656 tyrosine transaminase
Probab=99.88 E-value=5.1e-21 Score=164.05 Aligned_cols=222 Identities=16% Similarity=0.139 Sum_probs=147.0
Q ss_pred hhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCccc-ccccCCCCCCEEE--
Q psy6548 12 VPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLL-AIHYEDVRPDIVI-- 87 (242)
Q Consensus 12 ~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~-~~~~~~~~~~~~~-- 87 (242)
+++ +...+.+++++++..++|++|.+ .+++.+++|+++|++||++||+||+|.+|...+... .....+-...+++
T Consensus 159 ~~~l~~~~~~~~~~v~l~~P~NPtG~~-~s~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~ 237 (409)
T PLN02656 159 LDAVEALADQNTVALVIINPGNPCGNV-YSYQHLKKIAETAEKLKILVIADEVYGHLAFGSNPFVPMGVFGSIVPVLTLG 237 (409)
T ss_pred HHHHHHHhccCceEEEEECCCCCCCCC-CCHHHHHHHHHHHHHcCCEEEEehhhhhcccCCCCcccHHHhcccCcEEEEc
Confidence 444 33334566777777779999955 567889999999999999999999998875443221 1111111122333
Q ss_pred -eecccc-CCccchheeEeC--------hhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHh---ccHHHHHHHHHHHH
Q psy6548 88 -LGKALS-GGLYPISAVLAD--------DEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILE---ENMIENAYKMGEIF 154 (242)
Q Consensus 88 -~sK~~~-~g~~~~g~~~~~--------~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~---~~~~~~~~~~~~~l 154 (242)
|||.|+ +| +|+||++++ +++++.+...... ..+.+.+++.++.++++.... +...+.++++++.+
T Consensus 238 SfSK~f~~pG-lRiG~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~q~a~~~~l~~~~~~~~~~~~~~~~~~r~~~ 315 (409)
T PLN02656 238 SLSKRWIVPG-WRLGWFVTTDPSGSFRDPKIVERIKKYFDI-LGGPATFIQAAVPTILEQTDESFFKKTINILKQSSDIC 315 (409)
T ss_pred ccchhccCcc-eeEEEEEEeCcccccccHHHHHHHHHHHhh-hcCCCHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHH
Confidence 999977 89 999999983 4677666542111 224567788777777752111 23455667777777
Q ss_pred HHHHHhhcCCCCCCeEeeeceeEEEEecCCc----hhHHH-HHHHHHHCCceeccC----CCCEEEEeccCcCCHHHHHH
Q psy6548 155 RSELRSRLSPDIVPVVRGKGLLNAIVLDKSI----LEVYD-VCIKMKDAGLVTKPI----SNNIIRLSPALNITEQELRE 225 (242)
Q Consensus 155 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~----~~~~~-~~~~l~~~gi~~~~~----~~~~lR~~~~~~~t~e~i~~ 225 (242)
.+.| +.++.......+..|+++|++++... .+..+ +.+.|.++||.+.|+ .++++|+++. .+++++++
T Consensus 316 ~~~L-~~~~~~~~~~~p~gg~~~w~~l~~~~~~~~~~~~~~~~~~l~~~gV~v~pg~~fg~~~~iRi~~~--~~~e~l~e 392 (409)
T PLN02656 316 CDRI-KEIPCITCPHKPEGSMAVMVKLNLSLLEDISDDIDFCFKLAREESVIILPGTAVGLKNWLRITFA--ADPSSLEE 392 (409)
T ss_pred HHHH-hhCCCCcCCcCCCeEEEEEEecchhhcCCCCCHHHHHHHHHHhCCEEEecchhcCCCCeEEEEeC--CCHHHHHH
Confidence 7878 55532111223456789999886310 12334 456777899999986 3578999955 58999999
Q ss_pred HHHHHHHHHHHHhh
Q psy6548 226 GLDIIINTINTMAA 239 (242)
Q Consensus 226 ~~~~l~~~l~~~~~ 239 (242)
++++|++.+.+...
T Consensus 393 al~rl~~~~~~~~~ 406 (409)
T PLN02656 393 ALGRIKSFYLRHSK 406 (409)
T ss_pred HHHHHHHHHHHhcc
Confidence 99999998876544
No 152
>PRK07865 N-succinyldiaminopimelate aminotransferase; Reviewed
Probab=99.88 E-value=4.5e-21 Score=162.07 Aligned_cols=202 Identities=14% Similarity=0.163 Sum_probs=142.2
Q ss_pred CCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccc-ccc--CC-CCCCEE---Eeeccc
Q psy6548 20 PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLA-IHY--ED-VRPDIV---ILGKAL 92 (242)
Q Consensus 20 ~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~-~~~--~~-~~~~~~---~~sK~~ 92 (242)
++++++++++++|++|.++ +.+.+++|+++|++||+++|+||+|.++...+.... ... .+ ....++ +|||.+
T Consensus 147 ~~~~~v~~~~p~NPtG~~~-~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~ 225 (364)
T PRK07865 147 QRPALIWLNSPSNPTGRVL-GVDHLRKVVAWARERGAVVASDECYLELGWDAEPVSILDPRVCGGDHTGLLAVHSLSKQS 225 (364)
T ss_pred ccceEEEEcCCCCCCCccC-CHHHHHHHHHHHHHcCCEEEEecchhhhccCCCCCccccccccCCccceEEEEeechhcc
Confidence 6788999999999999555 567899999999999999999999987644332111 111 01 112223 289999
Q ss_pred c-CCccchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHHHHhhcCCCCCCeE
Q psy6548 93 S-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVIL-EENMIENAYKMGEIFRSELRSRLSPDIVPVV 170 (242)
Q Consensus 93 ~-~g~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~-~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~ 170 (242)
+ +| +|+||+++++++++.+........++.+.+.+.++.++++..+ .+...+.++++++.+.+.| +..+ +....
T Consensus 226 ~~~G-lRiG~i~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L-~~~g--~~~~~ 301 (364)
T PRK07865 226 NLAG-YRAGFVAGDPALVAELLEVRKHAGMMVPAPVQAAMVAALGDDAHVREQRERYARRRAVLRPAL-EAAG--FRVDH 301 (364)
T ss_pred CCCc-eeeEEEecCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHH-HHcC--CcccC
Confidence 7 88 9999999999988887654333445667777777666665311 1234566677777777888 5543 22222
Q ss_pred eeeceeEEEEecCCchhHHHHHHHHHHCCceeccC------CCCEEEEeccCcCCHHHHHHHHHHHH
Q psy6548 171 RGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPI------SNNIIRLSPALNITEQELREGLDIII 231 (242)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~------~~~~lR~~~~~~~t~e~i~~~~~~l~ 231 (242)
+..++++|+.++. +..++.+.|.++||.+.|+ +++++|+++. .+++++++++++|+
T Consensus 302 ~~~~~~~~~~~~~---~~~~~~~~l~~~gv~v~pg~~f~~~~~~~iRi~~~--~~~~~~~~~~~~l~ 363 (364)
T PRK07865 302 SEAGLYLWATRGE---DCWDTVAWLAERGILVAPGDFYGPAGAQHVRVALT--ATDERIAAAVERLA 363 (364)
T ss_pred CCccEEEEEeCCC---CHHHHHHHHHHCCEEEeCccccCcCCCCEEEEEec--CCHHHHHHHHHHhh
Confidence 3456788887643 3567889999999999874 3578999954 47899999999885
No 153
>PRK05664 threonine-phosphate decarboxylase; Reviewed
Probab=99.88 E-value=8e-21 Score=158.42 Aligned_cols=199 Identities=15% Similarity=0.140 Sum_probs=139.8
Q ss_pred CEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEE---eecccc-CCc
Q psy6548 21 NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVI---LGKALS-GGL 96 (242)
Q Consensus 21 ~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~---~sK~~~-~g~ 96 (242)
+++++++..++||+|.++ +.+.+++++++|+++|++||+||+|.++...... ......+++++ |||+++ +|
T Consensus 124 ~~~~v~l~nP~NPTG~~~-s~~~l~~l~~~~~~~~~~iI~DE~y~~~~~~~s~---~~~~~~~~vi~~~SfSK~~gl~G- 198 (330)
T PRK05664 124 SLDVLVVVNPNNPTGRRF-DPARLLAWHARLAARGGWLVVDEAFMDNTPQHSL---AACAHRPGLIVLRSFGKFFGLAG- 198 (330)
T ss_pred CCCEEEEeCCcCCCCCcc-CHHHHHHHHHHHHhcCCEEEEECCcccCCCcccc---cccccCCCEEEEeeccccccCCC-
Confidence 344555556679999655 6677999999999999999999999766322111 11111233333 999999 99
Q ss_pred cchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHHHHhhcCCCCCCeEeeece
Q psy6548 97 YPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVIL-EENMIENAYKMGEIFRSELRSRLSPDIVPVVRGKGL 175 (242)
Q Consensus 97 ~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~-~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~ 175 (242)
+|+||+++++++++.+... ..+++.+.+++.++.++++... .+...+.++++++.+.+.| +.++ . ....+.++
T Consensus 199 lRiG~~v~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~r~~l~~~L-~~~~--~-~~~~~~~~ 272 (330)
T PRK05664 199 ARLGFVLAEPALLRALAEL--LGPWTVSGPTRWLAQAALADTPWQRRQRERLLAASQRLAALL-RRHG--L-TPAGGCAL 272 (330)
T ss_pred cceEEEEeCHHHHHHHHHh--cCCCCCCHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHH-HHCC--C-cccCCcce
Confidence 9999999999998888763 2345567777777777776432 1345677777788888888 5553 1 11123346
Q ss_pred eEEEEecCCchhHHHHHHHHHHCCceeccC-CCCEEEEeccCcCCHHHHHHHHHHHHHHHHH
Q psy6548 176 LNAIVLDKSILEVYDVCIKMKDAGLVTKPI-SNNIIRLSPALNITEQELREGLDIIINTINT 236 (242)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~-~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~ 236 (242)
++|+..+ +..++.+.|.++||.+... ..+++|+++. .+.++++++.+.|++..++
T Consensus 273 f~~~~~~----~~~~~~~~l~~~gi~v~~f~~~~~iRis~~--~~~~~~~~l~~al~~~~~~ 328 (330)
T PRK05664 273 FQWVRTE----DAAALHEFLARRGILTRLFEQPASLRFGLP--ADEADWARLDQALLAYRKE 328 (330)
T ss_pred EEEEecC----CHHHHHHHHHHCCeEEEECCCCCeEEEECC--CCHHHHHHHHHHHHHHHhh
Confidence 7777653 3578899999999999864 4579999944 3678889998888776554
No 154
>PRK00950 histidinol-phosphate aminotransferase; Validated
Probab=99.88 E-value=2.6e-21 Score=163.37 Aligned_cols=198 Identities=15% Similarity=0.191 Sum_probs=133.8
Q ss_pred CCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEEeecccc-CCcc
Q psy6548 19 NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALS-GGLY 97 (242)
Q Consensus 19 ~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~sK~~~-~g~~ 97 (242)
++++++++++.++|++|.+.+ .+++.++|+++|+++|+||+|.+|............+....+.+|||.++ +| +
T Consensus 156 ~~~~~~v~~~~p~nptG~~~~----~~~l~~l~~~~~~~li~De~y~~~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G-l 230 (361)
T PRK00950 156 TEKTKVIFLCTPNNPTGNLIP----EEDIRKILESTDALVFVDEAYVEFAEYDYTPLALEYDNLIIGRTFSKVFGLAG-L 230 (361)
T ss_pred ccCCCEEEEeCCCCCCCCCcC----HHHHHHHHHHCCcEEEEECchhhhCccchHHHHHhcCCEEEEEeehHhhcCch-h
Confidence 457788888888999998776 66788889999999999999987641111001111111111234899998 89 9
Q ss_pred chheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhhcCCCCCCeEeeeceeE
Q psy6548 98 PISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELRSRLSPDIVPVVRGKGLLN 177 (242)
Q Consensus 98 ~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~ 177 (242)
|+||+++++++++.+... ...++.+++++.++.++++ ..++.+..++..+..++.+.+.+. . ...+..++++
T Consensus 231 RiG~~~~~~~~~~~~~~~--~~~~~~~~~~~~~a~~~l~---~~~~~~~~~~~~~~~r~~l~~~l~--~-~~~~~~~~~i 302 (361)
T PRK00950 231 RIGYGFVPEWLIDYYMRA--KTPFSLTRLSQAAAIAALS---DKEYIEKSIEHGIKSREYLYNELP--F-KVYPSEANFV 302 (361)
T ss_pred hcchhcCCHHHHHHHHHh--cCCCCCCHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHHHhhcC--e-eECCCcceEE
Confidence 999999999988877653 3344567777777666664 223333333333333333322332 1 1123456788
Q ss_pred EEEecCCchhHHHHHHHHHHCCceeccC------CCCEEEEeccCcCCHHHHHHHHHHHHHHH
Q psy6548 178 AIVLDKSILEVYDVCIKMKDAGLVTKPI------SNNIIRLSPALNITEQELREGLDIIINTI 234 (242)
Q Consensus 178 ~~~~~~~~~~~~~~~~~l~~~gi~~~~~------~~~~lR~~~~~~~t~e~i~~~~~~l~~~l 234 (242)
|+.++. .+..+++++|.++||.+.++ +++++|++++ +.++++++++.|++++
T Consensus 303 ~~~~~~--~~~~~~~~~l~~~gv~v~~~~~f~~~~~~~lRis~~---~~~~~~~l~~~L~~il 360 (361)
T PRK00950 303 LVDVTP--MTAKEFCEELLKRGVIVRDCTSFRGLGDYYIRVSIG---TFEENERFLEILKEIV 360 (361)
T ss_pred EEECCC--CCHHHHHHHHHHCCEEEeeCCccCCCCCCeEEEECC---CHHHHHHHHHHHHHHh
Confidence 888843 47889999999999999864 2568999943 7889999999998875
No 155
>PF00155 Aminotran_1_2: Aminotransferase class I and II 1-aminocyclopropane-1-carboxylate synthase signature aspartate aminotransferase signature; InterPro: IPR004839 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into class I and class II. This entry includes proteins from both subfamilies.; GO: 0016769 transferase activity, transferring nitrogenous groups, 0030170 pyridoxal phosphate binding, 0009058 biosynthetic process; PDB: 3NRA_B 3P6K_B 3OP7_A 3ASB_A 3ASA_A 1W7M_A 3FVX_A 1W7N_A 3FVU_B 3FVS_A ....
Probab=99.88 E-value=7.5e-22 Score=166.65 Aligned_cols=212 Identities=18% Similarity=0.244 Sum_probs=149.1
Q ss_pred CCChhh--hcCCC---C--CEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCccc-c-cccC
Q psy6548 9 SKQVPA--KLKSN---P--NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLL-A-IHYE 79 (242)
Q Consensus 9 ~~d~~~--~~~~~---~--~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~-~-~~~~ 79 (242)
+.|+++ +.+.+ + ++.++++++++||+|. ..+.+.+++|+++|++||+++|+||+|.++......+ . ....
T Consensus 129 ~~d~~~l~~~l~~~~~~~~~~~~v~~~~p~nPtG~-~~~~~~l~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~ 207 (363)
T PF00155_consen 129 HLDPEALEEALDELPSKGPRPKAVLICNPNNPTGS-VLSLEELRELAELAREYNIIIIVDEAYSDLIFGDPDFGPIRSLL 207 (363)
T ss_dssp EETHHHHHHHHHTSHTTTETEEEEEEESSBTTTTB-B--HHHHHHHHHHHHHTTSEEEEEETTTTGBSSSSHTHHHHGHH
T ss_pred cccccccccccccccccccccceeeeccccccccc-ccccccccchhhhhcccccceeeeeceeccccCCCccCcccccc
Confidence 456666 33333 2 5789999999999995 5567889999999999999999999998764332211 1 1111
Q ss_pred CCCCCEEE---eecccc-CCccchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHH-----hccHHHHHHHH
Q psy6548 80 DVRPDIVI---LGKALS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVIL-----EENMIENAYKM 150 (242)
Q Consensus 80 ~~~~~~~~---~sK~~~-~g~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~-----~~~~~~~~~~~ 150 (242)
....++++ +||.++ .| +|+||+++++++++.+......+ ..+.+.+.++.+.+.... .+...+.++++
T Consensus 208 ~~~~~vi~~~S~SK~~g~~G-lRvG~i~~~~~~~~~l~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~ 284 (363)
T PF00155_consen 208 DEDDNVIVVGSLSKSFGLPG-LRVGYIVAPPELIERLRRFQRSG--LSSSPMQAAAAAALSDPELVEKWLEELRERLREN 284 (363)
T ss_dssp TTTSTEEEEEESTTTTTSGG-GTEEEEEEEHHHHHHHHHHHHHT--TSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccceeeeeccccccccc-cccccccchhhhhhhhhhccccc--cccchhhHHHHHhhhcccccccccccchhhHHHH
Confidence 22333332 889998 88 99999999999988887633333 236555555555544332 13466777788
Q ss_pred HHHHHHHHHhhcCCCCCCeEeeeceeEEEEecCCchhHHHHHHHHHHC-CceeccC----CCCEEEEeccCcCCHHHHHH
Q psy6548 151 GEIFRSELRSRLSPDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDA-GLVTKPI----SNNIIRLSPALNITEQELRE 225 (242)
Q Consensus 151 ~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-gi~~~~~----~~~~lR~~~~~~~t~e~i~~ 225 (242)
++.+++.| +..+ +....+..+++.|+.+... +..++.++|.++ ||.+.|+ .++++|+++ ...++|++++
T Consensus 285 ~~~l~~~L-~~~~--~~~~~~~~~~~~~~~~~~~--~~~~l~~~L~~~~gi~v~pg~~~~~~~~iRi~~-a~~~~e~~~~ 358 (363)
T PF00155_consen 285 RDLLREAL-EEIG--ITVLPPEAGFFLWVRLDPN--DAEELAQELLEEYGILVRPGSYFGVPGYIRISL-ASHSEEDLEE 358 (363)
T ss_dssp HHHHHHHH-HHTT--SEEEHHSBSSEEEEEESHH--HHHHHHHHHHHHHTEEEEEGGGGTSTTEEEEEG-GCSCHHHHHH
T ss_pred HHHHHHHH-HHhh--hheeeccCccEEEEEcccc--hHHHHHHHHHHhCCEEEEecCCCCCCCEEEEEe-ccCCHHHHHH
Confidence 88888888 5543 2223334678888877663 678999999998 9999874 367999997 6789999999
Q ss_pred HHHHH
Q psy6548 226 GLDII 230 (242)
Q Consensus 226 ~~~~l 230 (242)
++++|
T Consensus 359 ~~~~l 363 (363)
T PF00155_consen 359 ALERL 363 (363)
T ss_dssp HHHHH
T ss_pred HHhhC
Confidence 99886
No 156
>PRK07337 aminotransferase; Validated
Probab=99.88 E-value=6.9e-21 Score=162.24 Aligned_cols=212 Identities=16% Similarity=0.171 Sum_probs=147.6
Q ss_pred hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEE---Eeecc
Q psy6548 15 KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIV---ILGKA 91 (242)
Q Consensus 15 ~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~---~~sK~ 91 (242)
+...+++++++++..++|++|. ..+.+.+++|+++|++|++++|+||+|.++...+.... ......+++ ++||.
T Consensus 157 ~~~~~~~~~~v~l~~p~NPtG~-~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~--~~~~~~~vi~~~S~SK~ 233 (388)
T PRK07337 157 EAAWGERTRGVLLASPSNPTGT-SIAPDELRRIVEAVRARGGFTIVDEIYQGLSYDAAPVS--ALSLGDDVITINSFSKY 233 (388)
T ss_pred HhhcCccceEEEEECCCCCCCc-CcCHHHHHHHHHHHHHCCCEEEEeccccccccCCCCcC--hhhccCCEEEEEechhh
Confidence 3333557788888888999994 55678899999999999999999999987754332111 112234443 38999
Q ss_pred cc-CCccchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHH--H-hccHHHHHHHHHHHHHHHHHhhcCCCCC
Q psy6548 92 LS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVI--L-EENMIENAYKMGEIFRSELRSRLSPDIV 167 (242)
Q Consensus 92 ~~-~g~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~--~-~~~~~~~~~~~~~~l~~~l~~~l~~~~~ 167 (242)
++ +| +|+||+++++++++.+.........+.+.+++.++.++++.. . -.+..+.++++++.+.+.| +.++...
T Consensus 234 ~~~~G-~RiG~~~~~~~l~~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~L-~~~~~~~- 310 (388)
T PRK07337 234 FNMTG-WRLGWLVVPEALVGTFEKLAQNLFICASALAQHAALACFEPDTLAIYERRRAEFKRRRDFIVPAL-ESLGFKV- 310 (388)
T ss_pred cCCch-hheeeeecCHHHHHHHHHHHHHhccCCChHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHH-HhcCCcc-
Confidence 97 88 999999999988887765433334456777777766665421 1 1234566777778888888 5554211
Q ss_pred CeEeeeceeEEEEecCC----chhHHHHHHHH-HHCCceeccC-------CCCEEEEeccCcCCHHHHHHHHHHHHHHH
Q psy6548 168 PVVRGKGLLNAIVLDKS----ILEVYDVCIKM-KDAGLVTKPI-------SNNIIRLSPALNITEQELREGLDIIINTI 234 (242)
Q Consensus 168 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~l-~~~gi~~~~~-------~~~~lR~~~~~~~t~e~i~~~~~~l~~~l 234 (242)
...+..|+++|++++.. ..+..++++++ .++||.+.|+ +.+++|+++. .+++++++++++|.+.+
T Consensus 311 ~~~p~~g~f~~~~~~~~~~~~~~~~~~~~~~ll~~~gv~v~pg~~f~~~~~~~~~Ri~~~--~~~~~l~~~l~rl~~~l 387 (388)
T PRK07337 311 PVMPDGAFYVYADCRGVAHPAAGDSAALTQAMLHDAGVVLVPGRDFGPHAPRDYIRLSYA--TSMSRLEEAVARLGKLF 387 (388)
T ss_pred ccCCCeeEEEEEecccccCCCCCCHHHHHHHHHHhCCEEEeCchhhCCCCCCCEEEEEec--CCHHHHHHHHHHHHHHh
Confidence 12345689999998741 12567788775 4689999875 2479999955 47899999999998754
No 157
>PRK04781 histidinol-phosphate aminotransferase; Provisional
Probab=99.87 E-value=4.5e-21 Score=161.96 Aligned_cols=203 Identities=15% Similarity=0.158 Sum_probs=146.3
Q ss_pred cCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEE---eeccc
Q psy6548 16 LKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVI---LGKAL 92 (242)
Q Consensus 16 ~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~---~sK~~ 92 (242)
.+.+++++++++++++|++|.+. +.+.++++++.|+ +++++|+||+|.+|...... ....+..+++++ |||+|
T Consensus 147 ~~~~~~~~lv~l~~p~NPTG~~~-~~~~~~~l~~~~~-~~~~iI~Deay~~f~~~~~~--~~~~~~~~~vi~~~SfSK~~ 222 (364)
T PRK04781 147 AALASNAKLVFLCSPSNPAGSAI-ALDQIERALQALQ-GKALVVVDEAYGEFSDVPSA--VGLLARYDNLAVLRTLSKAH 222 (364)
T ss_pred HHhccCCeEEEEcCCCCCCCCCc-CHHHHHHHHHhCC-CCcEEEEeCcchhhcCCcch--HHHHhhCCCEEEEecChhhc
Confidence 34466889999999999999655 5677888888875 47899999999887532211 111122344444 99999
Q ss_pred c-CCccchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHH---hccHHHHHHHHHHHHHHHHHhhcCCCCCC
Q psy6548 93 S-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVIL---EENMIENAYKMGEIFRSELRSRLSPDIVP 168 (242)
Q Consensus 93 ~-~g~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~---~~~~~~~~~~~~~~l~~~l~~~l~~~~~~ 168 (242)
+ +| +|+||+++++++++.+... ...++.+.+++.++.++++... ..+..+.+++.++.+.+.| +.++. ...
T Consensus 223 gl~G-lRvGy~v~~~~l~~~l~~~--~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L-~~~~~-~~~ 297 (364)
T PRK04781 223 ALAA-ARIGSLIANAELIAVLRRC--QAPYPVPTPCAALAEQALSAPALAVTARRVAEVRAERERLHAAL-AQLPG-VRR 297 (364)
T ss_pred cccc-ceeeeeeCCHHHHHHHHhc--cCCCCCCHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH-HhCCC-CCe
Confidence 9 99 9999999999999988864 3355677777777776665321 1223455677778888888 66642 222
Q ss_pred eEeeeceeEEEEecCCchhHHHHHHHHHHCCceeccCC-----CCEEEEeccCcCCHHHHHHHHHHHHHHH
Q psy6548 169 VVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPIS-----NNIIRLSPALNITEQELREGLDIIINTI 234 (242)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~-----~~~lR~~~~~~~t~e~i~~~~~~l~~~l 234 (242)
..+..|+++|++++. .+++.+.|.++||.+.++. .+++|++ ..++++++++++.|+++.
T Consensus 298 ~~p~~g~f~~~~~~~----~~~~~~~l~~~gI~v~~~~~~~~~~~~~Ris---~~~~~~~~~l~~al~~~~ 361 (364)
T PRK04781 298 VYPSQGNFLLVRFDD----AEAAFQALLAAGVVVRDQRAAPRLSDALRIT---LGTPEQNDRVLAALQRTQ 361 (364)
T ss_pred ECCCCCcEEEEEcCC----HHHHHHHHHHCCeEEeeCCCCCCCCCeEEEe---CCCHHHHHHHHHHHHHHH
Confidence 235668999998863 4678899999999998762 5789999 347899999999998754
No 158
>TIGR01264 tyr_amTase_E tyrosine aminotransferase, eukaryotic. This model describes tyrosine aminotransferase as found in animals and Trypanosoma cruzi. It is the first enzyme of a pathway of tyrosine degradation via homogentisate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway. These plant sequences are excluded from the model seed and score between the trusted an noise cutoffs.
Probab=99.87 E-value=8.6e-21 Score=162.32 Aligned_cols=211 Identities=13% Similarity=0.165 Sum_probs=144.7
Q ss_pred CCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCC--CEEE---eecccc
Q psy6548 19 NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRP--DIVI---LGKALS 93 (242)
Q Consensus 19 ~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~--~~~~---~sK~~~ 93 (242)
+.++++++++.++|++|. ..+.+.+++|+++|++||+++|+||+|.+|...+.... ......+ .+++ |||.|+
T Consensus 166 ~~~~~~v~~~~p~NPtG~-~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~-~~~~~~~~~~vi~~~SfSK~~~ 243 (401)
T TIGR01264 166 DEKTAALIVNNPSNPCGS-VFSRQHLEEILAVAERQCLPIIADEIYGDMVFSGATFE-PLASLSSTVPILSCGGLAKRWL 243 (401)
T ss_pred ccCceEEEEcCCCCCCCC-CCCHHHHHHHHHHHHHCCCEEEEEhhhhhhccCCcccc-cHHHcCCCCcEEEEccCcccCC
Confidence 456788888888999995 55678899999999999999999999988754432111 1111122 2333 999987
Q ss_pred -CCccchheeEeCh------hhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHh---ccHHHHHHHHHHHHHHHHHhhcC
Q psy6548 94 -GGLYPISAVLADD------EVMGTLVPGTHGSTYGGNPLACKLAMTALDVILE---ENMIENAYKMGEIFRSELRSRLS 163 (242)
Q Consensus 94 -~g~~~~g~~~~~~------~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~---~~~~~~~~~~~~~l~~~l~~~l~ 163 (242)
+| +|+||+++++ ++++.+..... ..++.+++++.++.++++...+ +...+.++++++.+.+.| +.++
T Consensus 244 ~~G-lRiG~iv~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~q~a~~~~l~~~~~~~l~~~~~~~~~~r~~l~~~L-~~~~ 320 (401)
T TIGR01264 244 VPG-WRLGWIIIHDRRGILRDIRDGLVKLSQ-RILGPCTIVQGALPSILLRTPQEYFDGTLSVLESNAMLCYGAL-AAVP 320 (401)
T ss_pred Ccc-ceEEEEEecCcchhHHHHHHHHHHHhh-ccCCCCcHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHH-HhCC
Confidence 89 9999999863 34444333211 2345567777777666653111 234566777777788888 5553
Q ss_pred CCCCCeEeeeceeEEEEecCC----chhHHHHHHHHH-HCCceeccC----CCCEEEEeccCcCCHHHHHHHHHHHHHHH
Q psy6548 164 PDIVPVVRGKGLLNAIVLDKS----ILEVYDVCIKMK-DAGLVTKPI----SNNIIRLSPALNITEQELREGLDIIINTI 234 (242)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~-~~gi~~~~~----~~~~lR~~~~~~~t~e~i~~~~~~l~~~l 234 (242)
++....+..|+++|+.++.. ..+..++++.|+ ++||.+.|+ ..+++|++. ..+++++++++++|.+.+
T Consensus 321 -~~~~~~p~~g~f~~~~~~~~~~~~~~~~~~~~~~l~~~~gI~v~pg~~f~~~~~iRis~--~~~~~~l~~~l~rl~~~~ 397 (401)
T TIGR01264 321 -GLRPVMPSGAMYMMVGIEMEHFPEFKNDVEFTERLVAEQSVFCLPGSCFEYPGFFRVVL--TVPVVMMEEACSRIQEFC 397 (401)
T ss_pred -CCcccCCCeeeEEEEEecccccCCCCCHHHHHHHHHHhCCEEEeCchhcCCCCeEEEEE--cCCHHHHHHHHHHHHHHH
Confidence 22223456789999997531 024577888876 789999875 368999995 457899999999999988
Q ss_pred HHH
Q psy6548 235 NTM 237 (242)
Q Consensus 235 ~~~ 237 (242)
+++
T Consensus 398 ~~~ 400 (401)
T TIGR01264 398 ERH 400 (401)
T ss_pred hcc
Confidence 653
No 159
>PRK03321 putative aminotransferase; Provisional
Probab=99.87 E-value=2.7e-21 Score=162.74 Aligned_cols=210 Identities=18% Similarity=0.185 Sum_probs=143.6
Q ss_pred Chhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcc-cccccCCCCCCEEE-
Q psy6548 11 QVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKL-LAIHYEDVRPDIVI- 87 (242)
Q Consensus 11 d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~-~~~~~~~~~~~~~~- 87 (242)
|++. +...+++++++++++++|++|.+++ .+.+.++++.| ++++++|+||+|.+|...+.. .........+++++
T Consensus 134 ~~~~l~~~~~~~~~~v~l~~p~NPtG~~~~-~~~l~~l~~~~-~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~ 211 (352)
T PRK03321 134 DLDAMAAAITDRTRLIFVCNPNNPTGTVVT-PAELARFLDAV-PADVLVVLDEAYVEYVRDDDVPDGLELVRDHPNVVVL 211 (352)
T ss_pred CHHHHHHhhccCCCEEEEeCCCCCcCCCcC-HHHHHHHHHhC-CCCeEEEEechHHHhccCcCCCcHHHHHhhCCCEEEE
Confidence 3444 3333457888888899999997765 34444444433 369999999999876443321 11112222344443
Q ss_pred --eecccc-CCccchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHhhcC
Q psy6548 88 --LGKALS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILE-ENMIENAYKMGEIFRSELRSRLS 163 (242)
Q Consensus 88 --~sK~~~-~g~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~-~~~~~~~~~~~~~l~~~l~~~l~ 163 (242)
|||.|+ +| +|+||+++++++++.+.+. ...++.+.+++.++.++++.... .+..+...+.++.+.+.| +..+
T Consensus 212 ~S~SK~~g~~G-lRiG~~v~~~~~~~~~~~~--~~~~~~s~~~q~~a~~~l~~~~~~~~~~~~~~~~r~~~~~~L-~~~~ 287 (352)
T PRK03321 212 RTFSKAYGLAG-LRVGYAVGHPEVIAALRKV--AVPFSVNSLAQAAAIASLAAEDELLERVDAVVAERDRVRAAL-RAAG 287 (352)
T ss_pred ecchHHhhhHH-HhhhhhcCCHHHHHHHHHh--cCCCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHH-HHCC
Confidence 899998 89 9999999999999988763 34567788888877777652221 122333444556666777 4443
Q ss_pred CCCCCeEeeeceeEEEEecCCchhHHHHHHHHHHCCceeccCCCCEEEEeccCcCCHHHHHHHHHHHHHHHH
Q psy6548 164 PDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTIN 235 (242)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~ 235 (242)
.. ..+..|+++|+.++. +..++.+.|.++||.+.+.+.+++|++ ..+.+++++++++|+++++
T Consensus 288 --~~-~~~~~g~~i~i~l~~---~~~~~~~~l~~~gI~v~~~~~~~iRi~---~~~~~~~~~~~~al~~~~~ 350 (352)
T PRK03321 288 --WT-VPPSQANFVWLPLGE---RTADFAAAAAEAGVVVRPFAGEGVRVT---IGAPEENDAFLRAARAWRA 350 (352)
T ss_pred --Cc-cCCCCCCEEEEeCCC---CHHHHHHHHHHCCEEEEccCCCcEEEe---eCCHHHHHHHHHHHHHHhc
Confidence 21 123457889988754 467899999999999998777789999 3588999999999998765
No 160
>PRK08056 threonine-phosphate decarboxylase; Provisional
Probab=99.87 E-value=6.6e-21 Score=160.56 Aligned_cols=202 Identities=14% Similarity=0.168 Sum_probs=142.6
Q ss_pred CCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCccc--ccccCCCCCCEE--Eeecccc-
Q psy6548 19 NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLL--AIHYEDVRPDIV--ILGKALS- 93 (242)
Q Consensus 19 ~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~--~~~~~~~~~~~~--~~sK~~~- 93 (242)
.++++++++..++|++|. ..+++.+++|+++|++|++++|+||+|.+|...+... ..... ...++ +|||.++
T Consensus 140 ~~~~k~v~l~~p~NPTG~-~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~--~~~i~~~S~SK~~~~ 216 (356)
T PRK08056 140 TPDLDCLFLCTPNNPTGL-LPERQLLQAIAERCKSLNIALILDEAFIDFIPDETGFIPQLADN--PHLWVLRSLTKFYAI 216 (356)
T ss_pred cCCCCEEEEeCCcCCCCC-CCCHHHHHHHHHHHHhcCCEEEEecchhccCCcchHHHHHhccC--CCEEEEEechhhccC
Confidence 467889999999999996 6678899999999999999999999998875433211 11111 11223 3899999
Q ss_pred CCccchheeEeC-hhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHHHHhhcCCCCCCeEe
Q psy6548 94 GGLYPISAVLAD-DEVMGTLVPGTHGSTYGGNPLACKLAMTALDVIL-EENMIENAYKMGEIFRSELRSRLSPDIVPVVR 171 (242)
Q Consensus 94 ~g~~~~g~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~-~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~ 171 (242)
+| +|+||++++ +++++.+... ...++.+.+++.++.++++... .....+.++++++.+.+.| +.++. . ...+
T Consensus 217 ~G-~RiG~~v~~~~~~~~~l~~~--~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~r~~l~~~L-~~~~~-~-~~~~ 290 (356)
T PRK08056 217 PG-LRLGYLVNSDDAAVARMRRQ--QMPWSINAFAALAGEVILQDRAYQQATWQWLAEEGARFYQAL-CALPL-L-TVWP 290 (356)
T ss_pred cc-hhheeeecCCHHHHHHHHHh--CCCCchhHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHH-hcCCC-c-EEcC
Confidence 99 999999974 6676777642 2345566677666665553111 1234566677777788888 65532 1 1223
Q ss_pred eeceeEEEEecCCchhHHHHHHHHHHCCceeccC------CCCEEEEeccCcCCHHHHHHHHHHHHHHHH
Q psy6548 172 GKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPI------SNNIIRLSPALNITEQELREGLDIIINTIN 235 (242)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~------~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~ 235 (242)
+.++++|+.++.+ ..++++.|.++||.+.++ +.+++|++ ..++++.+++++.|+++++
T Consensus 291 ~~~~~~~~~~~~~---~~~~~~~l~~~gI~v~~~~~f~~~~~~~iRis---~~~~~~~~~l~~~l~~~~~ 354 (356)
T PRK08056 291 GRANYLFLRCERP---DIDLQRALLTQRILIRSCANYPGLDSRYYRVA---IRSAAENERLLAALRNVLT 354 (356)
T ss_pred CCCcEEEEEcCCC---hHHHHHHHHHCCeEEEECCCCCCCCCCEEEEE---EcCHHHHHHHHHHHHHHHc
Confidence 4578888887643 467999999999999865 23689999 3478899999999987653
No 161
>PRK08175 aminotransferase; Validated
Probab=99.87 E-value=8.1e-21 Score=162.16 Aligned_cols=211 Identities=15% Similarity=0.180 Sum_probs=149.1
Q ss_pred CCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCccc-ccccCCCCCC--E--EEeecccc-
Q psy6548 20 PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLL-AIHYEDVRPD--I--VILGKALS- 93 (242)
Q Consensus 20 ~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~-~~~~~~~~~~--~--~~~sK~~~- 93 (242)
++++++++++++|++| ...+.+.+++|+++|++||+++|+||+|.++...+... .........+ + .+|||.|+
T Consensus 163 ~~~~~v~i~~p~NPtG-~~~~~~~~~~i~~~a~~~~i~ii~De~y~~l~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~ 241 (395)
T PRK08175 163 PKPKMMILGFPSNPTA-QCVELEFFEKVVALAKRYDVLVVHDLAYADIVYDGWKAPSIMQVPGAKDVAVEFFTLSKSYNM 241 (395)
T ss_pred CCceEEEEeCCCCCCC-CCCCHHHHHHHHHHHHHcCcEEEEecchHhhccCCCCCcchhcCCCcccCEEEEeeccccccC
Confidence 4788999888899999 56677889999999999999999999998764333211 1111110112 2 23899997
Q ss_pred CCccchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHHhhcCCCCCCeEe
Q psy6548 94 GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILE--ENMIENAYKMGEIFRSELRSRLSPDIVPVVR 171 (242)
Q Consensus 94 ~g~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~--~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~ 171 (242)
+| +|+||+++++++++.+........++.+.+++.++.++++..+. +.+.+.++++++.+.+.| +..+ +....+
T Consensus 242 pG-lRiG~~~~~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L-~~~~--~~~~~p 317 (395)
T PRK08175 242 AG-WRIGFMVGNPELVSALARIKSYHDYGTFTPLQVAAIAALEGDQQCVRDIAEQYKRRRDVLVKGL-HEAG--WMVEMP 317 (395)
T ss_pred cc-hhheeeeCCHHHHHHHHHHHhhcccCCCcHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHH-HHcC--CcccCC
Confidence 89 99999999999988877543333455566666666666642211 234566667778888888 5553 222334
Q ss_pred eeceeEEEEecCCc--hhHHHHHHHHH-HCCceeccC------CCCEEEEeccCcCCHHHHHHHHHHHHHHHHHH
Q psy6548 172 GKGLLNAIVLDKSI--LEVYDVCIKMK-DAGLVTKPI------SNNIIRLSPALNITEQELREGLDIIINTINTM 237 (242)
Q Consensus 172 ~~~~~~~~~~~~~~--~~~~~~~~~l~-~~gi~~~~~------~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~ 237 (242)
..|+++|++++... .+..++++.|. ++||.+.|+ +++++|++. ..+++.+++++++|.+.+.+.
T Consensus 318 ~~g~~i~i~l~~~~~~~~~~~~~~~l~~~~gv~v~p~~~f~~~~~~~lRis~--~~~~~~~~~al~~l~~~l~~~ 390 (395)
T PRK08175 318 KASMYVWAKIPEPYAAMGSLEFAKKLLNEAKVCVSPGIGFGDYGDTHVRFAL--IENRDRIRQAIRGIKAMFRAD 390 (395)
T ss_pred CEEEEEEEECCcccCCCCHHHHHHHHHHhCCEEEeCchhhCcCCCCeEEEEe--CCCHHHHHHHHHHHHHHHHhc
Confidence 56899999998641 13678888776 679999886 246899995 458899999999999988753
No 162
>TIGR03542 DAPAT_plant LL-diaminopimelate aminotransferase. This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). This clade includes characterized species in plants and Chlamydia. Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh).
Probab=99.87 E-value=9e-21 Score=162.24 Aligned_cols=206 Identities=13% Similarity=0.069 Sum_probs=139.5
Q ss_pred CCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCc-ccccccC-CCCCCEE---Eeecccc-
Q psy6548 20 PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGK-LLAIHYE-DVRPDIV---ILGKALS- 93 (242)
Q Consensus 20 ~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~-~~~~~~~-~~~~~~~---~~sK~~~- 93 (242)
++++++++++++||+|. +.+.+.+++|+++|++||++||+||+|.+|...+. ....... +....++ +|||.|+
T Consensus 172 ~~~~~i~l~nP~NPTG~-~~s~~~~~~l~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~g~ 250 (402)
T TIGR03542 172 PKIDIIYLCSPNNPTGT-VLTKEQLKELVDYANEHGSLILFDAAYSAFISDPSLPHSIFEIPGAKECAIEFRSFSKTAGF 250 (402)
T ss_pred CCceEEEEeCCCCCCCc-cCCHHHHHHHHHHHHHcCeEEEEEchhhhhccCCCCCcchhhCCCCcccEEEEecCccccCC
Confidence 57888888899999995 66778899999999999999999999988743332 1111111 1112233 3899998
Q ss_pred CCccchheeEeChhhh--------hccCCCCCCCCCCCCHHHHHHHHHHHHHH--H-hccHHHHHHHHHHHHHHHHHhhc
Q psy6548 94 GGLYPISAVLADDEVM--------GTLVPGTHGSTYGGNPLACKLAMTALDVI--L-EENMIENAYKMGEIFRSELRSRL 162 (242)
Q Consensus 94 ~g~~~~g~~~~~~~~~--------~~l~~~~~~~~~~~~~~~~~~a~a~l~~~--~-~~~~~~~~~~~~~~l~~~l~~~l 162 (242)
+| +|+||++++++++ ..+.........+.+.+++.++.++++.. . .....+.++++++.+.+.| +..
T Consensus 251 pG-lRiG~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L-~~~ 328 (402)
T TIGR03542 251 TG-VRLGWTVVPKELTYADGHSVIQDWERRQCTKFNGASYPVQRAAEAAYAGEGLQPILEAISYYMENARILRKAL-EAA 328 (402)
T ss_pred CC-cceEEEEecHHHhhcchhhHHHHHHHHhhhcccCCCHHHHHHHHHHHcCcchhHHHHHHHHHHHHHHHHHHHH-Hhc
Confidence 89 9999999998876 11111011112245667776665555421 1 1123455667777787888 554
Q ss_pred CCCCCCeEeeeceeEEEEecCCchhHHHHHHHHH-HCCceeccC------CCCEEEEeccCcCCHHHHHHHHHHHHHH
Q psy6548 163 SPDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMK-DAGLVTKPI------SNNIIRLSPALNITEQELREGLDIIINT 233 (242)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~gi~~~~~------~~~~lR~~~~~~~t~e~i~~~~~~l~~~ 233 (242)
+ .....+..++++|+.++.. .+..++++.|. ++||.+.|+ +.+++|++ +..+++++++++++|+++
T Consensus 329 ~--~~~~~~~~~~f~~v~l~~~-~~~~~l~~~l~~~~gv~v~pg~~f~~~~~~~iRis--~~~~~~~l~~~l~~l~~~ 401 (402)
T TIGR03542 329 G--FKVYGGEHAPYLWVKTPEG-ISSWDFFDFLLYQYHVVGTPGSGFGPSGEGFVRFS--AFGKRENIVEACERIKEA 401 (402)
T ss_pred C--ceecCCCceeEEEEECCCC-CCHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEE--ecCCHHHHHHHHHHHHhh
Confidence 3 2111223578999999874 46778888887 569999886 25789999 445889999999999875
No 163
>PRK09440 avtA valine--pyruvate transaminase; Provisional
Probab=99.87 E-value=5.9e-21 Score=164.12 Aligned_cols=216 Identities=17% Similarity=0.140 Sum_probs=148.5
Q ss_pred CCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEE---EeeccccCC
Q psy6548 19 NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIV---ILGKALSGG 95 (242)
Q Consensus 19 ~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~---~~sK~~~~g 95 (242)
+.+++++++.+++||+|.+ .+.+.+++|+++|++||++||+||+|..+........... ....+++ +|||...+|
T Consensus 177 ~~~~~~i~l~~P~NPTG~~-~s~~~~~~l~~~a~~~~~~iI~De~Y~~~~~~~~~~~~~~-~~~~~vI~~~SfSK~~~pG 254 (416)
T PRK09440 177 DEDTGAICVSRPTNPTGNV-LTDEELEKLDALARQHNIPLLIDNAYGPPFPGIIFSEATP-LWNPNIILCMSLSKLGLPG 254 (416)
T ss_pred CCCceEEEEecCCCCCCcc-CCHHHHHHHHHHHHHcCCcEEEeCCccccCCCcchhhcCc-cccCCeEEEecccccCCCc
Confidence 5578889999999999955 5678899999999999999999999964311110000000 1122333 399974489
Q ss_pred ccchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHh-----ccHHHHHHHHHHHHHHHHHhhcCC-CCCCe
Q psy6548 96 LYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILE-----ENMIENAYKMGEIFRSELRSRLSP-DIVPV 169 (242)
Q Consensus 96 ~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~-----~~~~~~~~~~~~~l~~~l~~~l~~-~~~~~ 169 (242)
+|+||+++++++++.+........++.+.+.+.++.++++...- +.+...++++++.+++.|.+.+.. .+...
T Consensus 255 -lRiG~~i~~~~l~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~L~~~l~~~~~~~~ 333 (416)
T PRK09440 255 -VRCGIVIADEEIIEALSNMNGIISLAPGRLGPAIAAEMIESGDLLRLSETVIRPFYRQKVQLAIALLRRYLPDEPCLIH 333 (416)
T ss_pred -ceEEEEeCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCeEEe
Confidence 99999999999988887644444456677888777766653211 113344556667777777333332 11112
Q ss_pred EeeeceeEEEEecCCchhHHHHHHHHHHCCceeccC-----C--------CCEEEEeccCcCCHHHHHHHHHHHHHHHHH
Q psy6548 170 VRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPI-----S--------NNIIRLSPALNITEQELREGLDIIINTINT 236 (242)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~-----~--------~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~ 236 (242)
.+..|+++|++++....+..++.+.|.++||.+.|+ + .+++|+++. .+++++++++++|++++++
T Consensus 334 ~p~gg~fiw~~~~~~~~~~~~~~~~l~~~gV~v~pg~~F~~~~~~~~~~~~~~iRis~~--~~~~~l~~~i~~l~~~~~~ 411 (416)
T PRK09440 334 KPEGAIFLWLWFKDLPITTEELYQRLKARGVLVVPGHYFFPGLDEDWPHAHQCIRMNYV--QDDEEIEKGIAILAEEVEK 411 (416)
T ss_pred cCCCceEEEEECCCCCCCHHHHHHHHHHCCEEEechHhhCCCCccccCCcCceEEEEec--CCHHHHHHHHHHHHHHHHH
Confidence 344589999998762145678999999999999875 1 248999944 5899999999999999887
Q ss_pred Hhh
Q psy6548 237 MAA 239 (242)
Q Consensus 237 ~~~ 239 (242)
..+
T Consensus 412 ~~~ 414 (416)
T PRK09440 412 AYA 414 (416)
T ss_pred Hhh
Confidence 543
No 164
>PRK08363 alanine aminotransferase; Validated
Probab=99.87 E-value=9e-21 Score=162.05 Aligned_cols=216 Identities=13% Similarity=0.079 Sum_probs=143.7
Q ss_pred cCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEE---Eeeccc
Q psy6548 16 LKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIV---ILGKAL 92 (242)
Q Consensus 16 ~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~---~~sK~~ 92 (242)
...+.+++++++.+++|++|.+. +.+.+++|+++|++||+++|+||+|.++...+............+++ +|||.+
T Consensus 161 ~~~~~~~~~v~l~~p~NPtG~~~-~~~~~~~l~~~a~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~ 239 (398)
T PRK08363 161 KKITEKTKAIAVINPNNPTGALY-EKKTLKEILDIAGEHDLPVISDEIYDLMTYEGKHVSPGSLTKDVPVIVMNGLSKVY 239 (398)
T ss_pred hhCCcceEEEEEECCCCCCCcCc-CHHHHHHHHHHHHHcCeEEEEhhhhhhhccCCcccCHHHcCcCCcEEEEecchhcc
Confidence 33345788888888899999544 67889999999999999999999998763333211111111122333 389997
Q ss_pred c-CCccchheeEe--ChhhhhccCCCC---CCCCCCCCHHHHHHHHHHHHHHH--hccHHHHHHHHHHHHHHHHHhhcCC
Q psy6548 93 S-GGLYPISAVLA--DDEVMGTLVPGT---HGSTYGGNPLACKLAMTALDVIL--EENMIENAYKMGEIFRSELRSRLSP 164 (242)
Q Consensus 93 ~-~g~~~~g~~~~--~~~~~~~l~~~~---~~~~~~~~~~~~~~a~a~l~~~~--~~~~~~~~~~~~~~l~~~l~~~l~~ 164 (242)
+ +| +|+||+++ ++++++.+.... ....++.+.+++.++.+++.... -++..+.++++++.+.+.| +.++.
T Consensus 240 ~~~G-lRiG~~~~~~~~~~~~~l~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~l~~~~~~~~~~~~~l~~~L-~~~~~ 317 (398)
T PRK08363 240 FATG-WRLGYIYFVDPEGKLAEVREAIDKLARIRLCPNTPAQFAAIAGLTGPMDYLEEYMKKLKERRDYIYKRL-NEIPG 317 (398)
T ss_pred CCcc-ceEEEEEEeCcHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHH-hcCCC
Confidence 6 89 99999987 665555443221 11235567777777766664211 1234566777888888888 55532
Q ss_pred CCCCeEeeeceeEEEEecCCc-hhHHHH-HHHHHHCCceeccC------CCCEEEEeccCcCCHHHHHHHHHHHHHHHHH
Q psy6548 165 DIVPVVRGKGLLNAIVLDKSI-LEVYDV-CIKMKDAGLVTKPI------SNNIIRLSPALNITEQELREGLDIIINTINT 236 (242)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~l~~~gi~~~~~------~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~ 236 (242)
+....+..++++|+.++... .+..++ .+.|.++||.+.|+ +++++|++. ..+++++++++++|++.+++
T Consensus 318 -~~~~~p~g~~~~~~~l~~~~~~~~~~~~~~~l~~~gV~v~~g~~f~~~~~~~iRis~--~~~~~~l~~~l~~l~~~~~~ 394 (398)
T PRK08363 318 -ISTTKPQGAFYIFPRIEEGPWKDDKEFVLDVLHEAHVLFVHGSGFGEYGAGHFRLVF--LPPVEILEEAMDRFEEFMRE 394 (398)
T ss_pred -CEecCCCeEEEEEEEeccCCCCCHHHHHHHHHHhCCEEEeCchhhCCCCCCeEEEEe--cCCHHHHHHHHHHHHHHHHH
Confidence 22223456778887776520 123444 45567899999875 247899995 46789999999999998876
Q ss_pred H
Q psy6548 237 M 237 (242)
Q Consensus 237 ~ 237 (242)
.
T Consensus 395 ~ 395 (398)
T PRK08363 395 R 395 (398)
T ss_pred h
Confidence 3
No 165
>PRK05839 hypothetical protein; Provisional
Probab=99.87 E-value=9.4e-21 Score=160.60 Aligned_cols=200 Identities=13% Similarity=0.082 Sum_probs=135.6
Q ss_pred CCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccc-ccc-----CCCCCCEEE---eec
Q psy6548 20 PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLA-IHY-----EDVRPDIVI---LGK 90 (242)
Q Consensus 20 ~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~-~~~-----~~~~~~~~~---~sK 90 (242)
.+++++++..++||+|. ..+++.+++|+++|++||++||+||+|.++...+.... ... ....+++++ |||
T Consensus 154 ~~~k~v~i~nP~NPTG~-~~s~~~l~~i~~~~~~~~~~ii~DE~Y~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~SfSK 232 (374)
T PRK05839 154 QEVDLVILNSPNNPTGR-TLSLEELIEWVKLALKHDFILINDECYSEIYENTPPPSLLEASILVGNESFKNVLVINSISK 232 (374)
T ss_pred ccccEEEEeCCCCCcCc-ccCHHHHHHHHHHHHHcCCEEEeccchhhcccCCCCCCHhhhhcccCccccCcEEEEecccc
Confidence 35888888899999995 45678899999999999999999999987642221111 110 001123333 999
Q ss_pred ccc-CCccchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHHHHhhcCCCCCC
Q psy6548 91 ALS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVIL-EENMIENAYKMGEIFRSELRSRLSPDIVP 168 (242)
Q Consensus 91 ~~~-~g~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~-~~~~~~~~~~~~~~l~~~l~~~l~~~~~~ 168 (242)
.|+ +| +|+||+++++++++.+........++.+.+++.++.+++..-. -+.+.+.++++++.+.+ .++. .
T Consensus 233 ~~~~~G-lRiG~ii~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~----~l~~--~- 304 (374)
T PRK05839 233 RSSAPG-LRSGFIAGDASILKKYKAYRTYLGCASPLPLQKAAAVAWLDDEHAEFFRNIYAKNLKLARE----ILGI--T- 304 (374)
T ss_pred ccCCcc-ceeEEEecCHHHHHHHHHHHhhcCCCCChHHHHHHHHHhccchHHHHHHHHHHHHHHHHHH----hcCC--C-
Confidence 987 89 9999999999888877654333344556666766655543100 01223333444443333 2321 1
Q ss_pred eEeeeceeEEEEecCCchhHHHHHHHHHH-CCceeccC--------CCCEEEEeccCcCCHHHHHHHHHHHHHHHH
Q psy6548 169 VVRGKGLLNAIVLDKSILEVYDVCIKMKD-AGLVTKPI--------SNNIIRLSPALNITEQELREGLDIIINTIN 235 (242)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~gi~~~~~--------~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~ 235 (242)
.+..|+++|++++. ..+++++|.+ +||.+.|+ +.+++|++. ..+++++++++++|++.++
T Consensus 305 -~p~gg~fi~~~~~~----~~~~~~~l~~~~gi~v~pg~~f~~~~~~~~~iRis~--~~~~~~~~~~l~~l~~~l~ 373 (374)
T PRK05839 305 -IPPATFYVWLPVDN----DEEFTKKLYQNEGIKVLPGSFLGRNGIGKGYVRIAL--VYDTPKLEKALEIIKTYLE 373 (374)
T ss_pred -CCCeeEEEEEeCCC----hHHHHHHHHHHCCEEEeCchhhCCCCCCCCeEEEEe--cCCHHHHHHHHHHHHHHhh
Confidence 45568999998864 3578888875 99999885 147999995 4578999999999988764
No 166
>PLN00145 tyrosine/nicotianamine aminotransferase; Provisional
Probab=99.87 E-value=1.7e-20 Score=161.52 Aligned_cols=225 Identities=16% Similarity=0.172 Sum_probs=147.0
Q ss_pred Chhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCccc-ccccCCCCCCEEE-
Q psy6548 11 QVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLL-AIHYEDVRPDIVI- 87 (242)
Q Consensus 11 d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~-~~~~~~~~~~~~~- 87 (242)
|+++ +.+.+.+++++++.+++|++|. +.+.+.+++|+++|++||+++|+||+|.+|...+..+ ....++-...+++
T Consensus 179 d~~~l~~~~~~~~~~i~i~~P~NPtG~-v~~~~~l~~i~~~a~~~~i~ii~De~Y~~~~~~~~~~~~~~~~~~~~~vi~~ 257 (430)
T PLN00145 179 DLEGVEALADENTVAMVIINPNNPCGS-VYSYEHLAKIAETARKLGILVIADEVYDHLTFGSKPFVPMGVFGEVAPVLTL 257 (430)
T ss_pred CHHHHHHHhCcCceEEEEeCCCCCCCC-CCCHHHHHHHHHHHHHcCCEEEEeccchhhccCCCCccchhhhcccCcEEEE
Confidence 3444 4444567788888888999995 5667889999999999999999999998764333211 1111121223333
Q ss_pred --eecccc-CCccchheeEe--Chhhhh------ccCCCCCCCCCCCCHHHHHHHHHHHHHHHh---ccHHHHHHHHHHH
Q psy6548 88 --LGKALS-GGLYPISAVLA--DDEVMG------TLVPGTHGSTYGGNPLACKLAMTALDVILE---ENMIENAYKMGEI 153 (242)
Q Consensus 88 --~sK~~~-~g~~~~g~~~~--~~~~~~------~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~---~~~~~~~~~~~~~ 153 (242)
|||.++ +| +|+||+++ ++.+++ .+... .......+.+.+.++..+++...+ +...+.+++.++.
T Consensus 258 ~S~SK~~~~pG-~RlG~iv~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~Q~a~~~~l~~~~~~~~~~~~~~~~~~~~~ 335 (430)
T PLN00145 258 GSISKRWVVPG-WRLGWIATCDPNGILKETKVVDSIRNY-LNISTDPATFVQGAIPQIIANTKEEFFTKTLGLLKETADI 335 (430)
T ss_pred eccccccCCCC-eeEEEEEEecchhhhhhhHHHHHHHHH-hcccCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence 899977 89 99999986 333322 22221 112223456777777666652111 2345666677777
Q ss_pred HHHHHHhhcCCCCCCeEeeeceeEEEEecCC---c-hhHHHHHHHHH-HCCceeccC----CCCEEEEeccCcCCHHHHH
Q psy6548 154 FRSELRSRLSPDIVPVVRGKGLLNAIVLDKS---I-LEVYDVCIKMK-DAGLVTKPI----SNNIIRLSPALNITEQELR 224 (242)
Q Consensus 154 l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~l~-~~gi~~~~~----~~~~lR~~~~~~~t~e~i~ 224 (242)
+.+.| +.++.......+..++++|++++.. . .+..+++.+|. ++||.+.|+ .++++|+++. .+.++++
T Consensus 336 ~~~~L-~~~~g~~~~~~P~ga~y~~v~l~~~~~~~~~~~~~~~~~ll~~~gV~v~pG~~fg~~~~lRis~~--~~~~~l~ 412 (430)
T PLN00145 336 CYEKI-KEIKCITCPHKPEGSMFVMVKLDLSCLSGIKDDMDFCCKLAKEESVVVLPGSALGMKNWLRITFA--IDPPSLE 412 (430)
T ss_pred HHHHH-hcCCCCCCCcCCCeeeEEEeccChhhcCCCCCHHHHHHHHHHhCCEEEeCccccCCCCeEEEEeC--CCHHHHH
Confidence 77777 5543211122356788999988642 0 24556776555 679999886 4689999954 5889999
Q ss_pred HHHHHHHHHHHHHhhhc
Q psy6548 225 EGLDIIINTINTMAAKK 241 (242)
Q Consensus 225 ~~~~~l~~~l~~~~~~~ 241 (242)
+++++|.+.+.+..+++
T Consensus 413 ~al~rl~~~~~~~~~~~ 429 (430)
T PLN00145 413 DGLERLKSFCLRHAKLA 429 (430)
T ss_pred HHHHHHHHHHHHhcccc
Confidence 99999999998876654
No 167
>PRK07550 hypothetical protein; Provisional
Probab=99.87 E-value=7.3e-21 Score=161.99 Aligned_cols=217 Identities=14% Similarity=0.138 Sum_probs=148.8
Q ss_pred Chhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCc-cc-ccccCCCCCCEE-
Q psy6548 11 QVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGK-LL-AIHYEDVRPDIV- 86 (242)
Q Consensus 11 d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~-~~-~~~~~~~~~~~~- 86 (242)
|++. +...+.+++++++.+++|++|.++ +.+.+++|+++|++||+++|+||+|.+|...+. .. .....+...+++
T Consensus 152 ~~~~l~~~~~~~~~~v~~~~P~NPtG~~~-~~~~~~~i~~~~~~~~~~iI~Dd~y~~~~~~~~~~~~~~~~~~~~~~~i~ 230 (386)
T PRK07550 152 DPAAAEALITPRTRAIALVTPNNPTGVVY-PPELLHELYDLARRHGIALILDETYRDFDSGGGAPHDLFADPDWDDTLVH 230 (386)
T ss_pred CHHHHHHHhcccCcEEEEeCCCCCCCccc-CHHHHHHHHHHHHHcCeEEEEeccchhhccCCCCCcchhhCCCccccEEE
Confidence 3444 333345677777777789999655 678899999999999999999999987633221 11 111111122333
Q ss_pred --Eeecccc-CCccchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHHhh
Q psy6548 87 --ILGKALS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILE--ENMIENAYKMGEIFRSELRSR 161 (242)
Q Consensus 87 --~~sK~~~-~g~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~--~~~~~~~~~~~~~l~~~l~~~ 161 (242)
+|||.++ +| +|+||+++++++++.+.......+.+.+.+++.++..+++.+.. +...+.++++++.+++.| +.
T Consensus 231 ~~S~SK~~g~~G-~RiG~i~~~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L-~~ 308 (386)
T PRK07550 231 LYSFSKSYALTG-HRVGAVVASPARIAEIEKFMDTVAICAPRIGQIAVAWGLPNLADWRAGNRAEIARRRDAFRAVF-AR 308 (386)
T ss_pred EecchhhccCcc-cceEeeecCHHHHHHHHHHHhhcccCCCcHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHH-Hh
Confidence 4899999 89 99999999998888777644444455667777766666653322 234566777888888888 55
Q ss_pred cCCCCCCeEeeeceeEEEEecCCchhHHHHHHHHH-HCCceeccC------CCCEEEEeccCcCCHHHHHHHHHHHHHH
Q psy6548 162 LSPDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMK-DAGLVTKPI------SNNIIRLSPALNITEQELREGLDIIINT 233 (242)
Q Consensus 162 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~gi~~~~~------~~~~lR~~~~~~~t~e~i~~~~~~l~~~ 233 (242)
.. .+ ...+..+++.|+.++..+.+..+++++|. ++||.+.|+ +.+++|+++.. .+++++++++++|.+.
T Consensus 309 ~~-~~-~~~~~g~~~~~~~~~~~~~~~~~l~~~l~~~~gv~v~pg~~f~~~~~~~iRis~~~-~~~~~~~~~~~~l~~~ 384 (386)
T PRK07550 309 LP-GW-ELLASGAYFAYVRHPFPDRPSREVARRLAKEAGILCLPGTMFGPGQEGYLRLAFAN-ADVAGIGELVERLRAF 384 (386)
T ss_pred CC-Cc-eeCCCceEEEEecCCCCCCCHHHHHHHHHHhcCEEEeCchhhCCCCCCEEEEEeec-CCHHHHHHHHHHHHhh
Confidence 42 12 12234578889988762257888999875 579999885 25789999753 3688999999998764
No 168
>PRK06358 threonine-phosphate decarboxylase; Provisional
Probab=99.87 E-value=1.4e-20 Score=158.42 Aligned_cols=202 Identities=16% Similarity=0.202 Sum_probs=143.3
Q ss_pred CCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCccc-ccccCCCCCCEEE---eecccc-
Q psy6548 19 NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLL-AIHYEDVRPDIVI---LGKALS- 93 (242)
Q Consensus 19 ~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~-~~~~~~~~~~~~~---~sK~~~- 93 (242)
..+++++++..++|++|. ..+.+.+++|+++|++||+++|+||+|.+|...+... ........+++++ |||.++
T Consensus 139 ~~~~~~v~~~~P~NPtG~-~~~~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~gl 217 (354)
T PRK06358 139 KEEIDLVFLCNPNNPTGQ-LISKEEMKKILDKCEKRNIYLIIDEAFMDFLEENETISMINYLENFKNLIIIRAFTKFFAI 217 (354)
T ss_pred ccCCCEEEEeCCCCCCCC-ccCHHHHHHHHHHHHhcCCEEEEeCcccccCCCccchhHHHhccCCCCEEEEEechhhccC
Confidence 345777777777999995 5577889999999999999999999998875433211 1112222234443 899999
Q ss_pred CCccchheeEeC-hhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHhhcCCCCCCeEe
Q psy6548 94 GGLYPISAVLAD-DEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILE-ENMIENAYKMGEIFRSELRSRLSPDIVPVVR 171 (242)
Q Consensus 94 ~g~~~~g~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~-~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~ 171 (242)
+| +|+||++++ +.+++.+.... ..++.+.+++.++.++++.... +...+.+++.++.+.+.| +.++. . ...+
T Consensus 218 ~G-~RiG~lv~~~~~~~~~~~~~~--~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L-~~~~~-~-~~~~ 291 (354)
T PRK06358 218 PG-LRLGYGLTSNKNLAEKLLQMR--EPWSINTFADLAGQTLLDDKEYIKKTIQWIKEEKDFLYNGL-SEFKG-I-KVYK 291 (354)
T ss_pred cc-hhheeeecCCHHHHHHHHHhC--CCCcchHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHH-hcCCC-c-EEcC
Confidence 99 999999874 67777776532 2466777888777777752211 234566677778888888 55532 1 1123
Q ss_pred eeceeEEEEecCCchhHHHHHHHHHHCCceeccC------CCCEEEEeccCcCCHHHHHHHHHHHHHHH
Q psy6548 172 GKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPI------SNNIIRLSPALNITEQELREGLDIIINTI 234 (242)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~------~~~~lR~~~~~~~t~e~i~~~~~~l~~~l 234 (242)
+.|.++|+.++.. .+++++|.++||.+.++ +++++|++ ..+.++++++++.|++.+
T Consensus 292 ~~g~f~~~~~~~~----~~~~~~l~~~gI~v~~~~~f~~~~~~~iRls---~~~~~~~~~l~~~l~~~~ 353 (354)
T PRK06358 292 PSVNFIFFKLEKP----IDLRKELLKKGILIRSCSNYRGLDENYYRVA---VKSREDNKKLLKALEVIL 353 (354)
T ss_pred CcceEEEEEcCch----HHHHHHHHHCCeEEEECCCCCCCCCCEEEEE---eCCHHHHHHHHHHHHHHh
Confidence 3466888887652 68999999999999875 24689999 558899999999998764
No 169
>PRK05764 aspartate aminotransferase; Provisional
Probab=99.87 E-value=1.5e-20 Score=160.51 Aligned_cols=213 Identities=17% Similarity=0.222 Sum_probs=147.6
Q ss_pred CCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcc-ccccc--CCCCCCEE---Eeeccc
Q psy6548 19 NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKL-LAIHY--EDVRPDIV---ILGKAL 92 (242)
Q Consensus 19 ~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~-~~~~~--~~~~~~~~---~~sK~~ 92 (242)
+++++++++.+++|++|.+ .+.+.+++|+++|++||+++|+||+|.++...+.. ..... .+....++ +|||.+
T Consensus 162 ~~~~~~v~~~~p~NPtG~~-~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~ 240 (393)
T PRK05764 162 TPKTKALILNSPSNPTGAV-YSPEELEAIADVAVEHDIWVLSDEIYEKLVYDGAEFTSIASLSPELRDRTITVNGFSKAY 240 (393)
T ss_pred CccceEEEEECCCCCCCcc-cCHHHHHHHHHHHHHCCcEEEEeccccceeeCCCCcccHHHcCCCCcCCEEEEecCcccc
Confidence 4578888888889999854 55678999999999999999999999876433321 11111 12222222 389999
Q ss_pred c-CCccchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHHhhcCCCCCCe
Q psy6548 93 S-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILE--ENMIENAYKMGEIFRSELRSRLSPDIVPV 169 (242)
Q Consensus 93 ~-~g~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~--~~~~~~~~~~~~~l~~~l~~~l~~~~~~~ 169 (242)
+ +| +|+||+++++++++.+.......++..+++++.++.+.++.... +++.+.++++++.+++.| ++++. +...
T Consensus 241 ~~~G-~RiG~i~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L-~~~~g-~~~~ 317 (393)
T PRK05764 241 AMTG-WRLGYAAGPKELIKAMSKLQSHSTSNPTSIAQYAAVAALNGPQDEVEEMRQAFEERRDLMVDGL-NEIPG-LECP 317 (393)
T ss_pred cCcc-ceeEEEecCHHHHHHHHHHHhhcccCCChHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHH-hhCCC-Cccc
Confidence 9 89 89999999999888876543334446677777777666651111 234566667777788888 55522 2222
Q ss_pred EeeeceeEEEEecCCch----hHHHHHHHHH-HCCceeccCC----CCEEEEeccCcCCHHHHHHHHHHHHHHHHHH
Q psy6548 170 VRGKGLLNAIVLDKSIL----EVYDVCIKMK-DAGLVTKPIS----NNIIRLSPALNITEQELREGLDIIINTINTM 237 (242)
Q Consensus 170 ~~~~~~~~~~~~~~~~~----~~~~~~~~l~-~~gi~~~~~~----~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~ 237 (242)
.+..++++|+.++.... +..++.+.|. ++||.+.++. .+++|++ +.++++++++++++|.++++++
T Consensus 318 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~vRis--~~~~~~~~~~~i~~l~~~~~~~ 392 (393)
T PRK05764 318 KPEGAFYVFPNVSKLLGKSITDSLEFAEALLEEAGVAVVPGIAFGAPGYVRLS--YATSLEDLEEGLERIERFLESL 392 (393)
T ss_pred CCCcceEEEEecccccccccCCHHHHHHHHHHhCCEEEccccccCCCCEEEEE--ecCCHHHHHHHHHHHHHHHHhh
Confidence 23446778887765311 2478888876 4799998752 4789999 5568999999999999988753
No 170
>PRK06107 aspartate aminotransferase; Provisional
Probab=99.87 E-value=9.1e-21 Score=162.18 Aligned_cols=213 Identities=13% Similarity=0.138 Sum_probs=150.2
Q ss_pred CCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhh-CCEEEEeccccccCccCccc-cc-cc-CCCCCCEEE---eecc
Q psy6548 19 NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQY-NVLFIADEVQTGLGRTGKLL-AI-HY-EDVRPDIVI---LGKA 91 (242)
Q Consensus 19 ~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~-~~~li~De~~~~~~~~g~~~-~~-~~-~~~~~~~~~---~sK~ 91 (242)
+++++++++.+++|++| ...+.+.+++++++|++| ++++|+||+|.++...+..+ .+ .. .+....+++ |||.
T Consensus 164 ~~~~~~v~l~~p~NPtG-~~~s~~~~~~l~~~a~~~~~~~iI~De~y~~l~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~ 242 (402)
T PRK06107 164 TPRTRWLILNAPSNPTG-AVYSRAELRALADVLLRHPHVLVLTDDIYDHIRFDDEPTPHLLAAAPELRDRVLVTNGVSKT 242 (402)
T ss_pred CcCceEEEEECCCCCCC-cCcCHHHHHHHHHHHHHcCCeEEEEehhccccccCCCCCCCHHHhCcCccCCEEEEeccchh
Confidence 45778888888899999 566778899999999998 99999999998764333211 11 11 112223444 7899
Q ss_pred cc-CCccchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHH--hccHHHHHHHHHHHHHHHHHhhcCCCCCC
Q psy6548 92 LS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVIL--EENMIENAYKMGEIFRSELRSRLSPDIVP 168 (242)
Q Consensus 92 ~~-~g~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~--~~~~~~~~~~~~~~l~~~l~~~l~~~~~~ 168 (242)
|+ +| +|+||+++++++++.+.......+++.+.+++.++..+++... -+...+.++++++.+.+.| +.++. ...
T Consensus 243 ~~~pG-lRiG~~~~~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L-~~~~g-~~~ 319 (402)
T PRK06107 243 YAMTG-WRIGYAAGPADLIAAINKLQSQSSSCPSSISQAAAAAALNGDQSFVTESVAVYKQRRDYALALL-NAIPG-LSC 319 (402)
T ss_pred hcCcc-cceeeeecCHHHHHHHHHHHHhcccCCChHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHH-hcCCC-Ccc
Confidence 98 89 9999999999999888775444556778888888776664211 1234566777788888888 55532 222
Q ss_pred eEeeeceeEEEEecC-------Cc---hhHHHHHHHH-HHCCceeccC----CCCEEEEeccCcCCHHHHHHHHHHHHHH
Q psy6548 169 VVRGKGLLNAIVLDK-------SI---LEVYDVCIKM-KDAGLVTKPI----SNNIIRLSPALNITEQELREGLDIIINT 233 (242)
Q Consensus 169 ~~~~~~~~~~~~~~~-------~~---~~~~~~~~~l-~~~gi~~~~~----~~~~lR~~~~~~~t~e~i~~~~~~l~~~ 233 (242)
..+..|+++|++++. .. .+..++...| .++||.+.|+ ..+++|++.. .++|++++++++|.+.
T Consensus 320 ~~p~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gv~v~pg~~Fg~~~~iRis~~--~~~e~l~~~l~~l~~~ 397 (402)
T PRK06107 320 LVPDGAFYLYVNCAGLIGKTTPEGKVLETDQDVVLYLLDSAGVAVVQGTAYGLSPYFRLSIA--TSLETLEEACARIERA 397 (402)
T ss_pred cCCCcceEEeeecccccccccccccCCCCHHHHHHHHHHhCCEEEeCccccCCCCeEEEEeC--CCHHHHHHHHHHHHHH
Confidence 234568888988731 00 1345677665 4679999986 2578999954 6899999999999998
Q ss_pred HHHH
Q psy6548 234 INTM 237 (242)
Q Consensus 234 l~~~ 237 (242)
++++
T Consensus 398 l~~~ 401 (402)
T PRK06107 398 VAAL 401 (402)
T ss_pred HHhc
Confidence 8765
No 171
>PTZ00433 tyrosine aminotransferase; Provisional
Probab=99.87 E-value=2.5e-20 Score=159.97 Aligned_cols=213 Identities=15% Similarity=0.178 Sum_probs=144.4
Q ss_pred CCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCccc-ccccCCCC-CCEEE--eecccc-
Q psy6548 19 NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLL-AIHYEDVR-PDIVI--LGKALS- 93 (242)
Q Consensus 19 ~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~-~~~~~~~~-~~~~~--~sK~~~- 93 (242)
+.+++++++.+++|++|. ..+.+.+++|+++|++||++||+||+|.+|...+... ....+... +.+++ |||.++
T Consensus 175 ~~~~~~i~~~~p~NPtG~-~~s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~~~ 253 (412)
T PTZ00433 175 DDRTKALIMTNPSNPCGS-NFSRKHVEDIIRLCEELRLPLISDEIYAGMVFNGATFTSVADFDTTVPRVILGGTAKNLVV 253 (412)
T ss_pred ccCceEEEEeCCCCCCCc-ccCHHHHHHHHHHHHHcCCeEEEeccccccccCCCCccchhhccCCCceEEEccchhhcCC
Confidence 457888889889999995 5567889999999999999999999998864333211 11111111 22333 899996
Q ss_pred CCccchheeEe------ChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHH---HhccHHHHHHHHHHHHHHHHHhhcCC
Q psy6548 94 GGLYPISAVLA------DDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVI---LEENMIENAYKMGEIFRSELRSRLSP 164 (242)
Q Consensus 94 ~g~~~~g~~~~------~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~---~~~~~~~~~~~~~~~l~~~l~~~l~~ 164 (242)
+| +|+||+++ .+++++.+.... ...++.+.+++.++.++++.. .-++..+.++++++.+.+.| +...
T Consensus 254 pG-lRlG~~i~~~p~~~~~~~~~~~~~~~-~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L-~~~~- 329 (412)
T PTZ00433 254 PG-WRLGWLLLVDPHGNGGDFLDGMKRLG-MLVCGPCSVVQAALGEALLNTPQEHLEQIVAKLEEGAMVLYNHI-GECI- 329 (412)
T ss_pred CC-eeEEEEEEeCCcccHHHHHHHHHHHh-hccCCCChHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHH-hcCC-
Confidence 89 99999986 235666554421 123466778887776666421 01234556666677777777 4332
Q ss_pred CCCCeEeeeceeEEEEecCC----chhHHHHHHHHH-HCCceeccC----CCCEEEEeccCcCCHHHHHHHHHHHHHHHH
Q psy6548 165 DIVPVVRGKGLLNAIVLDKS----ILEVYDVCIKMK-DAGLVTKPI----SNNIIRLSPALNITEQELREGLDIIINTIN 235 (242)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~-~~gi~~~~~----~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~ 235 (242)
.+....+..|+++|+.++.. ..+..++++.|. ++||.+.++ ..+++|+++. ..++++++++++|.+.++
T Consensus 330 ~~~~~~p~gg~f~~~~l~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~~iRis~~--~~~e~l~~al~~l~~~~~ 407 (412)
T PTZ00433 330 GLSPTMPRGSMFLMSRLDLEKFRDIKSDVEFYEKLLEEENVQVLPGEIFHMPGFTRLTIS--RPVEVLREAVERIKAFCE 407 (412)
T ss_pred CCcccCCCeeEEEEEEechhhcCCCCCHHHHHHHHHHhcCEEEeCccccCCCCeEEEEec--CCHHHHHHHHHHHHHHHH
Confidence 12223345688999988642 014678899988 479999886 2579999954 568899999999999887
Q ss_pred HHh
Q psy6548 236 TMA 238 (242)
Q Consensus 236 ~~~ 238 (242)
+.+
T Consensus 408 ~~~ 410 (412)
T PTZ00433 408 RHK 410 (412)
T ss_pred Hhc
Confidence 643
No 172
>cd00609 AAT_like Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary hi
Probab=99.87 E-value=1.1e-20 Score=158.33 Aligned_cols=210 Identities=24% Similarity=0.260 Sum_probs=154.8
Q ss_pred hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccc-cccCC-CCCCEE--Eeec
Q psy6548 15 KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLA-IHYED-VRPDIV--ILGK 90 (242)
Q Consensus 15 ~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~-~~~~~-~~~~~~--~~sK 90 (242)
+...++++++++++++++++|.+ .+.+.+++|+++|++||+++|+|++|+++...+.... ....+ ...+++ +++|
T Consensus 126 ~~~~~~~~~~v~i~~~~~~tG~~-~~~~~l~~l~~~~~~~~~~~ivD~a~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~K 204 (350)
T cd00609 126 EAAKTPKTKLLYLNNPNNPTGAV-LSEEELEELAELAKKHGILIISDEAYAELVYDGEPPPALALLDAYERVIVLRSFSK 204 (350)
T ss_pred HhhcCccceEEEEECCCCCCCcc-cCHHHHHHHHHHHHhCCeEEEEecchhhceeCCcccccccCcCccCcEEEEeeccc
Confidence 44557789999999999999964 5667899999999999999999999987654443211 01111 122343 3889
Q ss_pred ccc-CCccchheeEeCh-hhhhccCCCCCCCCCCCCHHHHHHHHHHHHHH--HhccHHHHHHHHHHHHHHHHHhhcCCCC
Q psy6548 91 ALS-GGLYPISAVLADD-EVMGTLVPGTHGSTYGGNPLACKLAMTALDVI--LEENMIENAYKMGEIFRSELRSRLSPDI 166 (242)
Q Consensus 91 ~~~-~g~~~~g~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~--~~~~~~~~~~~~~~~l~~~l~~~l~~~~ 166 (242)
+++ +| .++|++++++ ++.+.+.......++..+..++.++..+++.. ..+...+.++++++++++.| +..+...
T Consensus 205 ~~~~~g-~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L-~~~~~~~ 282 (350)
T cd00609 205 TFGLPG-LRIGYLIAPPEELLERLKKLLPYTTSGPSTLSQAAAAAALDDGEEHLEELRERYRRRRDALLEAL-KELGPLV 282 (350)
T ss_pred ccCCcc-cceEEEecCHHHHHHHHHHHHHhcccCCChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHH-HhcCCcc
Confidence 999 88 8999999998 78888776544445667777777777777765 22446677888888898988 6554322
Q ss_pred CCeEeeeceeEEEEecCCchhHHHHHHHHHHCCceeccC------CCCEEEEeccCcCCHHHHHHHHHHHH
Q psy6548 167 VPVVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPI------SNNIIRLSPALNITEQELREGLDIII 231 (242)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~------~~~~lR~~~~~~~t~e~i~~~~~~l~ 231 (242)
. ..+..+.+.++.++.. .....+.+.|.+.||.+.+. ++.++|++++.. .+|+++++++|+
T Consensus 283 ~-~~~~~g~~~~~~~~~~-~~~~~~~~~l~~~gi~i~~~~~~~~~~~~~iRi~~~~~--~~~i~~~~~al~ 349 (350)
T cd00609 283 V-VKPSGGFFLWLDLPEG-DDEEFLERLLLEAGVVVRPGSAFGEGGEGFVRLSFATP--EEELEEALERLA 349 (350)
T ss_pred c-cCCCccEEEEEecCCC-ChHHHHHHHHHhCCEEEecccccccCCCCeEEEEeeCC--HHHHHHHHHHhh
Confidence 1 3445678888887764 35666777888889999876 568999998877 899999999886
No 173
>PRK03158 histidinol-phosphate aminotransferase; Provisional
Probab=99.87 E-value=4.4e-21 Score=161.86 Aligned_cols=208 Identities=11% Similarity=0.067 Sum_probs=141.7
Q ss_pred Chhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCc-ccccccCCCCCC-E--
Q psy6548 11 QVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGK-LLAIHYEDVRPD-I-- 85 (242)
Q Consensus 11 d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~-~~~~~~~~~~~~-~-- 85 (242)
|++. +...+++++++++++++|++|.+.+ .+.+.++++.|+ +|+++|+||+|.+|...+. .......+..+. +
T Consensus 140 d~~~l~~~~~~~~~~v~i~~p~NPtG~~~~-~~~l~~~~~~~~-~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~ 217 (359)
T PRK03158 140 DLEAMLKAIDEQTKIVWICNPNNPTGTYVN-HEELLSFLESVP-SHVLVVLDEAYYEYVTAEDYPDTLPLLEKYENLIVL 217 (359)
T ss_pred CHHHHHHhcCCCCCEEEEeCCCCCCCCCCC-HHHHHHHHHhCC-CCcEEEEECchHhhcCCcccccHHHHHHhcCCEEEE
Confidence 4454 3333557888888889999997665 455666666553 6999999999987633221 111111111122 2
Q ss_pred EEeecccc-CCccchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHHHHhhcC
Q psy6548 86 VILGKALS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVIL-EENMIENAYKMGEIFRSELRSRLS 163 (242)
Q Consensus 86 ~~~sK~~~-~g~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~-~~~~~~~~~~~~~~l~~~l~~~l~ 163 (242)
.+|||.++ +| +|+||+++++++++.+.... .+++.+.+++.++.++++... .+...+.+++.++.+.+.| +..+
T Consensus 218 ~S~SK~~g~~G-lRiG~~v~~~~~~~~~~~~~--~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l-~~~~ 293 (359)
T PRK03158 218 RTFSKAYGLAA-LRVGYGIASEELIEKLNIAR--PPFNTTRIAQYAAIAALEDQAFLKECVEKNAEGLEQYYAFC-KEYG 293 (359)
T ss_pred EechHhhcCcc-hhhehhcCCHHHHHHHHHhc--CCCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHH-HHCC
Confidence 24999999 89 99999999999988887632 346778888888887775221 1223444555666666666 4432
Q ss_pred CCCCCeEeeeceeEEEEecCCchhHHHHHHHHHHCCceeccC----CCCEEEEeccCcCCHHHHHHHHHHHHHH
Q psy6548 164 PDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPI----SNNIIRLSPALNITEQELREGLDIIINT 233 (242)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~----~~~~lR~~~~~~~t~e~i~~~~~~l~~~ 233 (242)
+ ...++.|+++|++++. +..+++++|.++||.+.++ .++++|++ ..+++++++++++|+++
T Consensus 294 --~-~~~~~~g~~i~~~~~~---~~~~~~~~l~~~gv~v~~g~~f~~~~~iRi~---~~~~~~~~~l~~al~~~ 358 (359)
T PRK03158 294 --L-FYYPSQTNFIFVDTGR---DANELFEALLKKGYIVRSGAALGFPTGVRIT---IGLKEQNDKIIELLKEL 358 (359)
T ss_pred --C-eeCCCcCcEEEEECCC---CHHHHHHHHHHCCeEEeeCCCCCCCCeEEEe---cCCHHHHHHHHHHHHHh
Confidence 1 1224457888888743 4678999999999999985 36789999 34889999999999875
No 174
>COG0520 csdA Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=4.4e-20 Score=156.57 Aligned_cols=208 Identities=20% Similarity=0.243 Sum_probs=158.1
Q ss_pred hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEEee--ccc
Q psy6548 15 KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILG--KAL 92 (242)
Q Consensus 15 ~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~s--K~~ 92 (242)
+...+++|+++.+..+.|.+|.+.| +++|+++|++||+++++|.+|+ .+ + .+. +.-....|+++|| |++
T Consensus 156 ~~~i~~~Tklvais~vSn~tG~~~p----v~~I~~la~~~ga~v~VDaaq~-~~-h-~~i--dv~~l~~Df~afsgHKwl 226 (405)
T COG0520 156 EKLITPKTKLVALSHVSNVTGTVNP----VKEIAELAHEHGALVLVDAAQA-AG-H-LPI--DVQELGCDFLAFSGHKWL 226 (405)
T ss_pred HHhcCCCceEEEEECccccccccch----HHHHHHHHHHcCCEEEEECccc-cC-c-cCC--CchhcCCCEEEEcccccc
Confidence 5567889999999999999998888 9999999999999999999996 21 1 122 2234467999887 989
Q ss_pred cCCccchheeEeChhhhhccCCCCCCC------------CC----------CCCHHHHHHHHHHHHHHHh---ccHHHHH
Q psy6548 93 SGGLYPISAVLADDEVMGTLVPGTHGS------------TY----------GGNPLACKLAMTALDVILE---ENMIENA 147 (242)
Q Consensus 93 ~~g~~~~g~~~~~~~~~~~l~~~~~~~------------~~----------~~~~~~~~~a~a~l~~~~~---~~~~~~~ 147 (242)
.|+ .++|.+.+++++.+.+.|...++ ++ +.+.....+..++++.++. +++.++.
T Consensus 227 ~gP-~GiGvLy~r~~~l~~l~P~~~gg~~~~~~~~~~~~~~~~~p~rfe~gTpn~~~~i~l~aAl~~~~~ig~~~i~~~e 305 (405)
T COG0520 227 LGP-TGIGVLYVRKELLEELEPFLGGGGMIEYVSRDEGVTLAELPLRFEAGTPNIAGAIGLAAALDYLLEIGMEAIEAHE 305 (405)
T ss_pred cCC-CceEEEEEchHHHhhcCCcccCCCceeeecccccccccCcchhhccCCchHHHHHhHHHHHHHHHHHhHHHHHHHH
Confidence 887 78999999999999987642221 11 1223344444566776655 4578888
Q ss_pred HHHHHHHHHHHHhhcCCCCCCeEe--eeceeEEEEecCCchhHHHHHHHHHHCCceeccCCC------------CEEEEe
Q psy6548 148 YKMGEIFRSELRSRLSPDIVPVVR--GKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPISN------------NIIRLS 213 (242)
Q Consensus 148 ~~~~~~l~~~l~~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~------------~~lR~~ 213 (242)
+++..++.+.| ++++......++ ..+.++.|.+... .+.++++.|.++||.++.+.. ..+|+|
T Consensus 306 ~~L~~~~~~~L-~~~~~v~i~g~~~~~r~~~vsF~v~~~--~~~dv~~~L~~~gI~vr~g~~ca~p~~~~~~~~~~iR~S 382 (405)
T COG0520 306 RELTEYLLEGL-SELPGVEIYGPPDADRGGIVSFNVKGI--HPHDVATLLDEKGIAVRAGHHCAQPLHRLLGVDATIRAS 382 (405)
T ss_pred HHHHHHHHHHH-hcCCCeEEecCCcccCceEEEEEeCCC--CHHHHHHHHHhCCeEEEeccccccHHHHhcCCCCceEEE
Confidence 89999999999 777642222222 4577888888774 789999999999988876522 239999
Q ss_pred ccCcCCHHHHHHHHHHHHHHHH
Q psy6548 214 PALNITEQELREGLDIIINTIN 235 (242)
Q Consensus 214 ~~~~~t~e~i~~~~~~l~~~l~ 235 (242)
+++++|+||||++++.|++...
T Consensus 383 ~~~YNt~edid~l~~aL~~~~~ 404 (405)
T COG0520 383 LHLYNTEEDVDRLLEALKKALA 404 (405)
T ss_pred EeecCCHHHHHHHHHHHHHHhh
Confidence 9999999999999999998764
No 175
>TIGR03538 DapC_gpp succinyldiaminopimelate transaminase. This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).
Probab=99.86 E-value=8.6e-21 Score=161.92 Aligned_cols=204 Identities=13% Similarity=0.014 Sum_probs=140.2
Q ss_pred CCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccC--cccc----cccCC--CCCCEEE---
Q psy6548 19 NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTG--KLLA----IHYED--VRPDIVI--- 87 (242)
Q Consensus 19 ~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g--~~~~----~~~~~--~~~~~~~--- 87 (242)
..+++++++.+++|++|. +.+.+.+++|+++|++||++||+||+|.++...+ .... ....+ ..+.+++
T Consensus 163 ~~~~k~i~l~~p~NPtG~-~~s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S 241 (393)
T TIGR03538 163 WRRCQLLFVCSPGNPTGA-VLSLDTLKKLIELADQYGFIIASDECYSELYFDEGNPPAGLLQAAAQLGRDDFRRCLVFHS 241 (393)
T ss_pred hhcceEEEEeCCCCCcCc-ccCHHHHHHHHHHHHHCCEEEEECcchhhcccCCCCCCcCHHHhcccccccccccEEEEec
Confidence 347888888889999995 5577899999999999999999999998764332 1110 11111 1123333
Q ss_pred eecccc-CCccchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHHHHhhcCCC
Q psy6548 88 LGKALS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVIL-EENMIENAYKMGEIFRSELRSRLSPD 165 (242)
Q Consensus 88 ~sK~~~-~g~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~-~~~~~~~~~~~~~~l~~~l~~~l~~~ 165 (242)
|||.++ +| +|+||+++++++++.+.......+++.+++.+.++.+++..-+ -+...+.++++++.+.+.| +..
T Consensus 242 ~SK~~~~~G-lRvG~~i~~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L-~~~--- 316 (393)
T TIGR03538 242 LSKRSNLPG-LRSGFVAGDAEILKAFLRYRTYHGCAMPIPTQLASIAAWNDEQHVRENRALYREKFAAVLEIL-GQV--- 316 (393)
T ss_pred chhhcCCcc-cceEEEecCHHHHHHHHHHHHhhccCcCHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHH-Hhh---
Confidence 899887 89 9999999999888877653332344567777777665553211 1223455666666777777 332
Q ss_pred CCCeEeeeceeEEEEecCCchhHHHHHHHHH-HCCceeccCC------------CCEEEEeccCcCCHHHHHHHHHHHHH
Q psy6548 166 IVPVVRGKGLLNAIVLDKSILEVYDVCIKMK-DAGLVTKPIS------------NNIIRLSPALNITEQELREGLDIIIN 232 (242)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~gi~~~~~~------------~~~lR~~~~~~~t~e~i~~~~~~l~~ 232 (242)
.....+..|+++|++++. +..++++.|+ ++||.+.|+. .+++|+++ ..+++++++++++|++
T Consensus 317 ~~~~~p~gg~f~~~~~~~---~~~~~~~~l~~~~gV~v~pg~~f~~~~~~~~~~~~~~Ris~--~~~~~~l~~~l~~l~~ 391 (393)
T TIGR03538 317 LDLELPDAGFYLWPKVPG---DDEAFARALYEEENVTVLPGRFLAREAEGVNPGEGRVRIAL--VAPLEECVEAAERIRS 391 (393)
T ss_pred CcccCCCeeEEEEEECCC---CHHHHHHHHHHHCCEEEeCCccccccccCCCCCCCEEEEEe--cCCHHHHHHHHHHHHH
Confidence 112235678999999872 3567888886 5799997652 46899994 4578999999999876
Q ss_pred H
Q psy6548 233 T 233 (242)
Q Consensus 233 ~ 233 (242)
.
T Consensus 392 ~ 392 (393)
T TIGR03538 392 F 392 (393)
T ss_pred h
Confidence 3
No 176
>TIGR03392 FeS_syn_CsdA cysteine desulfurase, catalytic subunit CsdA. Members of this protein family are CsdS. This protein, found Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, and related to SufS, works together with and physically interacts with CsdE (a paralog of SufE). CsdA has cysteine desulfurase activity that is enhanced by CsdE, a sulfur acceptor protein. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems.
Probab=99.86 E-value=6.3e-20 Score=156.86 Aligned_cols=212 Identities=14% Similarity=0.149 Sum_probs=149.5
Q ss_pred Chhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEEee
Q psy6548 11 QVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILG 89 (242)
Q Consensus 11 d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~s 89 (242)
|+++ +...+++++++++..++|++|.+.+ +++|.++|++||+++++|++|+ ++.. ..... ....|+.++|
T Consensus 146 ~~~~l~~~i~~~t~lv~i~~~~n~tG~~~~----~~~i~~~~~~~~~~~ivD~a~~-~~~~--~~~~~--~~~~d~~~~s 216 (398)
T TIGR03392 146 DIRQLPELLTPRTRILALGQMSNVTGGCPD----LARAITLAHQYGAVVVVDGAQG-VVHG--PPDVQ--ALDIDFYAFS 216 (398)
T ss_pred CHHHHHHHhccCceEEEEECccccccccCC----HHHHHHHHHHcCCEEEEEhhhh-cCCC--CCChh--hcCCCEEEEe
Confidence 4455 4444567999999999999998876 8999999999999999999995 2211 11222 2346888877
Q ss_pred --ccccCCccchheeEeChhhhhccCCCCCCCC---------------------CCCCHHHHHHHHHHHHHHHhc---cH
Q psy6548 90 --KALSGGLYPISAVLADDEVMGTLVPGTHGST---------------------YGGNPLACKLAMTALDVILEE---NM 143 (242)
Q Consensus 90 --K~~~~g~~~~g~~~~~~~~~~~l~~~~~~~~---------------------~~~~~~~~~~a~a~l~~~~~~---~~ 143 (242)
|.++ + .++|+++.++++++.+.+...+.. .+.+..+..++.++++.+.+. .+
T Consensus 217 ~~K~~g-p-~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~GT~~~~~~~a~~~al~~l~~~g~~~i 294 (398)
T TIGR03392 217 GHKLYG-P-TGIGVLYGKTELLEAMPPWQGGGKMLSHVSFDGFIPQAVPHRFEAGTPNIAGVIGLSAALEWLTDIDIAAA 294 (398)
T ss_pred cccccC-C-CceEEEEEcHHHHhhCCCeecCCceEeeccccccccCCChhhccCCCCCHHHHHHHHHHHHHHHHhCHHHH
Confidence 9766 3 458999999888877765321110 123445666677778776543 35
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCCeEeeeceeEEEEecCCchhHHHHHHHHHHCCceeccCC------------CCEEE
Q psy6548 144 IENAYKMGEIFRSELRSRLSPDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPIS------------NNIIR 211 (242)
Q Consensus 144 ~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~------------~~~lR 211 (242)
.++.+++++++++.| +.++. +.......+.++++.++. .+.+++.+.|.++||.++++. .+.+|
T Consensus 295 ~~~~~~l~~~l~~~l-~~l~g-~~~~~~~~~~i~~~~~~~--~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~g~~~~iR 370 (398)
T TIGR03392 295 EAWSVSLADLAEERL-AQLPG-FRSFRCPGSSLLAFDFAG--VHHSDLAALLAESGIALRAGQHCAQPLMAALGVSGTLR 370 (398)
T ss_pred HHHHHHHHHHHHHHH-hcCCC-eEEeCCCCCcEEEEEeCC--cCHHHHHHHHHhCCEEEecCccchHHHHHHhCCCCEEE
Confidence 567777788888888 55532 111111234566666654 356789999999999997642 46899
Q ss_pred EeccCcCCHHHHHHHHHHHHHHHHHH
Q psy6548 212 LSPALNITEQELREGLDIIINTINTM 237 (242)
Q Consensus 212 ~~~~~~~t~e~i~~~~~~l~~~l~~~ 237 (242)
++++.++|++|++++++.|+++++.+
T Consensus 371 vS~~~~~t~~ei~~l~~~l~~~~~~~ 396 (398)
T TIGR03392 371 ASFAPYNTQQDVDALVDAVGAALELL 396 (398)
T ss_pred EEeeccCCHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999988764
No 177
>TIGR01140 L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxylase. This family contains pyridoxal phosphate-binding class II aminotransferases (see PFAM:PF00222) closely related to, yet distinct from, histidinol-phosphate aminotransferase (HisC). It is found in cobalamin biosynthesis operons in Salmonella typhimurium and Bacillus halodurans (each of which also has HisC) and has been shown to have L-threonine-O-3-phosphate decarboxylase activity in Salmonella. Although the gene symbol cobD was assigned in Salmonella, cobD in other contexts refers to a different cobalamin biosynthesis enzyme, modeled by pfam03186 and called cbiB in Salmonella.
Probab=99.86 E-value=1.3e-20 Score=157.15 Aligned_cols=203 Identities=13% Similarity=0.114 Sum_probs=140.1
Q ss_pred Chhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEE---
Q psy6548 11 QVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIV--- 86 (242)
Q Consensus 11 d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~--- 86 (242)
|++. +...+ ++++++++.++|++|. +++.+.+++|+++|++||+++|+||+|.++..... .....+...+++
T Consensus 115 d~~~l~~~~~-~~~~v~i~~p~NPtG~-~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~--~~~~~~~~~~~i~~~ 190 (330)
T TIGR01140 115 DLDRLPAALE-ELDVLVLCNPNNPTGR-LIPPETLLALAARLRARGGWLVVDEAFIDFTPDAS--LAPQAARFPGLVVLR 190 (330)
T ss_pred CHHHHHhhcc-cCCEEEEeCCCCCCCC-CCCHHHHHHHHHHhHhcCCEEEEECcccccCCccc--hhhHhccCCCEEEEE
Confidence 6776 33332 4567777777899995 55778899999999999999999999987643311 111111122333
Q ss_pred Eeecccc-CCccchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHHHHhhcCC
Q psy6548 87 ILGKALS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVIL-EENMIENAYKMGEIFRSELRSRLSP 164 (242)
Q Consensus 87 ~~sK~~~-~g~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~-~~~~~~~~~~~~~~l~~~l~~~l~~ 164 (242)
++||.++ +| +|+||+++++++++.+... ...++.+++++.++.+.++... .+...++++++++.+++.| +.++.
T Consensus 191 S~SK~~g~~G-~R~G~i~~~~~~~~~l~~~--~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L-~~~~~ 266 (330)
T TIGR01140 191 SLTKFFGLAG-LRLGFVVAHPALLARLREA--LGPWTVNGPARAAGRAALADTAWQAATRARLAAERARLAALL-ARLGG 266 (330)
T ss_pred ecchhhcCch-hhhhheeCCHHHHHHHHhc--CCCCCchHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHH-HhCCC
Confidence 3899999 89 9999999999998888763 3345667777777666665221 1234567777777777877 55542
Q ss_pred CCCCeEeeeceeEEEEecCCchhHHHHHHHHHHCCceeccC------CCCEEEEeccCcCCHHHHHHHHHHH
Q psy6548 165 DIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPI------SNNIIRLSPALNITEQELREGLDII 230 (242)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~------~~~~lR~~~~~~~t~e~i~~~~~~l 230 (242)
....++.+++.|+.++. ..+++++|.++||.+.|+ +.+++|+++ ....++ ++++++|
T Consensus 267 --~~~~~~~~~f~~~~~~~----~~~l~~~l~~~gi~v~pg~~f~~~~~~~iRi~~--~~~~~~-~~~~~~l 329 (330)
T TIGR01140 267 --LEVVGGTALFLLVRTPD----AAALHEALARRGILIRDFDNFPGLDPRYLRFAL--PTDEEN-DRLEEAL 329 (330)
T ss_pred --ceECCCCCeEEEEEcCC----HHHHHHHHHHCCEEEEECCCCCCCCCCEEEEEe--cCHHHH-HHHHHhh
Confidence 12224467888887654 468999999999999875 246899994 333344 7777765
No 178
>PLN03026 histidinol-phosphate aminotransferase; Provisional
Probab=99.86 E-value=1.9e-20 Score=159.05 Aligned_cols=201 Identities=9% Similarity=0.075 Sum_probs=140.6
Q ss_pred hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEE---eecc
Q psy6548 15 KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVI---LGKA 91 (242)
Q Consensus 15 ~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~---~sK~ 91 (242)
+.+.+++++++++++++|++|.+.+ .+++.++++.. +++|+||+|.+|...+... ......+++++ |||.
T Consensus 169 ~~~~~~~~~~v~l~~P~NPTG~~~~----~~~l~~l~~~~-~~vi~DeaY~~~~~~~~~~--~~~~~~~~viv~~SfSK~ 241 (380)
T PLN03026 169 EAVETHKPKLLFLTSPNNPDGSIIS----DDDLLKILELP-ILVVLDEAYIEFSTQESRM--KWVKKYDNLIVLRTFSKR 241 (380)
T ss_pred HHHhccCCcEEEEeCCCCCCCCCCC----HHHHHHHHhcC-CEEEEECcchhhcCCcchH--HHHHhCCCEEEEecchHh
Confidence 3333678899999999999997665 34444455433 8999999998774332211 11111233333 9999
Q ss_pred cc-CCccchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHHHHhhcCCCCCCe
Q psy6548 92 LS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVIL-EENMIENAYKMGEIFRSELRSRLSPDIVPV 169 (242)
Q Consensus 92 ~~-~g~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~-~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~ 169 (242)
++ +| +|+||+++++++++.+.... ..++.+.+++.++.++++... -++..+.+++.++++.+.| +.++. ...
T Consensus 242 ~glaG-lRiGy~~~~~~~i~~l~~~~--~~~~~~~~~q~aa~~aL~~~~~~~~~~~~~~~~r~~l~~~L-~~~~~--~~~ 315 (380)
T PLN03026 242 AGLAG-LRVGYGAFPLSIIEYLWRAK--QPYNVSVAAEVAACAALSNPKYLEDVKNALVEERERLFGLL-KEVPF--LEP 315 (380)
T ss_pred hcCcc-ccceeeecCHHHHHHHHHhc--CCCCCCHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHH-HHCCC--CeE
Confidence 99 99 99999999999988876532 245677788888887775321 1334566777888888888 66542 122
Q ss_pred EeeeceeEEEEecCCchhHHHHHHHHHHCCceeccC----CCCEEEEeccCcCCHHHHHHHHHHHHH
Q psy6548 170 VRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPI----SNNIIRLSPALNITEQELREGLDIIIN 232 (242)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~----~~~~lR~~~~~~~t~e~i~~~~~~l~~ 232 (242)
.+..++++|+.++.. .+..++.++|.++||.++++ ..+++|+++ .++++++++++.|++
T Consensus 316 ~p~~~~f~~~~~~~~-~~~~~~~~~l~~~gI~v~~~~~~~~~~~lRis~---~~~~~~~~l~~al~~ 378 (380)
T PLN03026 316 YPSDANFILCRVTSG-RDAKKLKEDLAKMGVMVRHYNSKELKGYIRVSV---GKPEHTDALMEALKQ 378 (380)
T ss_pred CCCCCeEEEEECCCC-CCHHHHHHHHHHCCeEEEECCCCCCCCEEEEec---CCHHHHHHHHHHHHH
Confidence 345678899988753 46788999999999999875 357899993 377889999988865
No 179
>TIGR03576 pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 family. Members of this archaeal protein family are pyridoxal phosphate enzymes of unknown function. Sequence similarity to SelA, a bacterial enzyme of selenocysteine biosynthesis, has led to some members being misannotated as functionally equivalent, but selenocysteine is made on tRNA in Archaea by a two-step process that does not involve a SelA homolog.
Probab=99.86 E-value=3.8e-20 Score=154.78 Aligned_cols=210 Identities=11% Similarity=0.092 Sum_probs=143.8
Q ss_pred cCCCChhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEecccccc--CccCcccccccCCCCC
Q psy6548 7 VKSKQVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGL--GRTGKLLAIHYEDVRP 83 (242)
Q Consensus 7 ~~~~d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~--~~~g~~~~~~~~~~~~ 83 (242)
+.++|++. +. ..++++|++++ .+++|++. +.+.+++|+++|++||+++++||+|..+ +..+.+.. ..++ +
T Consensus 123 ~~~~~l~~l~~--~~~~~lIiitg-~s~~G~v~-~~~~L~~i~~la~~~~~~livDEAy~~~~~~~~~~~~~-~~~~--~ 195 (346)
T TIGR03576 123 FESDELSELKK--IDGTSLVVITG-STMDLKVV-SEEDLKRVIKQAKSKEAIVLVDDASGARVRRLYGQPPA-LDLG--A 195 (346)
T ss_pred eccCCHHHHhh--CcCceEEEEEC-CCCCCccc-CHHHHHHHHHHHHHcCCEEEEECCccccccccCCCCCH-HHcC--C
Confidence 34566665 32 24567888877 58888665 4677999999999999999999999642 21232211 1223 4
Q ss_pred CEEE--eeccccCCccchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhh
Q psy6548 84 DIVI--LGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELRSR 161 (242)
Q Consensus 84 ~~~~--~sK~~~~g~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l~~~ 161 (242)
|+++ +||+++| +++||+++++++++.+.+....+.++.++++++++.++|+....+...+.++++++.+++.+ +.
T Consensus 196 divv~s~SKalaG--~r~G~v~~~~~li~~l~~~~~~~~~s~~~~~~~aa~~aL~~~~~~~~~~~l~~r~~~~~~~l-~~ 272 (346)
T TIGR03576 196 DLVVTSTDKLMDG--PRGGLLAGRKELVDKIKSVGEQFGLEAQAPLLAAVVRALEEFELSRIRDAFKRKEEVYLRLF-DK 272 (346)
T ss_pred cEEEeccchhccc--cceEEEEeCHHHHHHHHHhhcCcccCccHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHH-Hh
Confidence 5544 8997643 78999999999999998765555566788888888888876544455677777777777777 44
Q ss_pred cCCCCCCeEeeeceeEEEEecCCchhHHHHHHHHHHCCceeccCC-----CCEEEEeccCcCCHH---HHHHHHHHHHHH
Q psy6548 162 LSPDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPIS-----NNIIRLSPALNITEQ---ELREGLDIIINT 233 (242)
Q Consensus 162 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~-----~~~lR~~~~~~~t~e---~i~~~~~~l~~~ 233 (242)
+. + . +. .+.+++++++.. ...+...+.|.++||.+.|+. ++++|++ +..+++ +++++++.|++.
T Consensus 273 ~~--~-~-~~-~~~f~~~~~~~~-~~~~~~~~ll~~~gV~v~~~~~f~~~~~~vRis--~~~~~~~~~~~~~~~~al~~~ 344 (346)
T TIGR03576 273 LN--V-E-RT-PTGFVIKGVEEE-KLIEIGLDLLRNYGIITITAVGMPGASKTLRFD--LAAKDAERIGDDYLVEAVKDS 344 (346)
T ss_pred CC--C-C-cC-CCeEEEEeCCCC-CHHHHHHHHHHhCCEEEeCCcccCCCCCeEEEE--EecChHHhcCHHHHHHHHHhc
Confidence 32 1 1 12 233778877642 123455566667899999852 5799999 443443 699999999875
Q ss_pred H
Q psy6548 234 I 234 (242)
Q Consensus 234 l 234 (242)
+
T Consensus 345 ~ 345 (346)
T TIGR03576 345 L 345 (346)
T ss_pred c
Confidence 4
No 180
>PRK01688 histidinol-phosphate aminotransferase; Provisional
Probab=99.86 E-value=1.1e-20 Score=158.83 Aligned_cols=195 Identities=17% Similarity=0.193 Sum_probs=138.1
Q ss_pred CCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEE---eecccc-CC
Q psy6548 20 PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVI---LGKALS-GG 95 (242)
Q Consensus 20 ~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~---~sK~~~-~g 95 (242)
.+++++++++++|++|. ..+.+.++++++.|++ ++++|+||+|.+|..... ........+++++ |||++| +|
T Consensus 144 ~~~~lv~l~nPnNPTG~-~~~~~~l~~l~~~~~~-~~~vivDEay~~f~~~~s--~~~~~~~~~n~iv~rSfSK~~glaG 219 (351)
T PRK01688 144 DGVKVVYVCSPNNPTGN-LINPQDLRTLLELTRG-KAIVVADEAYIEFCPQAS--LAGWLAEYPHLVILRTLSKAFALAG 219 (351)
T ss_pred cCCcEEEEeCCCCCCCC-CCCHHHHHHHHHhCCC-CcEEEEECchhhcCCCCC--hHHHHhhCCCEEEEecchHhhcCHH
Confidence 47888999999999995 5566788999988876 688999999988742211 1111122345444 999999 89
Q ss_pred ccchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHH--H-hccHHHHHHHHHHHHHHHHHhhcCCCCCCeEee
Q psy6548 96 LYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVI--L-EENMIENAYKMGEIFRSELRSRLSPDIVPVVRG 172 (242)
Q Consensus 96 ~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~--~-~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~ 172 (242)
+|+||+++++++++.+.+. ...|..+.+++.++.++++.. + -++..+.+++.++++.+.| +.++. +....++
T Consensus 220 -lRiGy~i~~~~~i~~l~~~--~~~~~v~~~~~~~a~~~L~~~~~~~~~~~~~~~~~~r~~l~~~L-~~~~~-~~~~~ps 294 (351)
T PRK01688 220 -LRCGFTLANEEVINLLLKV--IAPYPLSTPVADIAAQALSPQGIAAMRERVAEINANRQWLIAAL-KEIPC-VEQVFDS 294 (351)
T ss_pred -HHHhHHhCCHHHHHHHHhc--cCCCCCCHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHH-HhCCC-CCeECCC
Confidence 9999999999998888763 334566767776666666521 1 1233455666777888888 65532 1112345
Q ss_pred eceeEEEEecCCchhHHHHHHHHHHCCceeccC-----CCCEEEEeccCcCCHHHHHHHHHHH
Q psy6548 173 KGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPI-----SNNIIRLSPALNITEQELREGLDII 230 (242)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~-----~~~~lR~~~~~~~t~e~i~~~~~~l 230 (242)
.++++++.++ +.+++.++|.++||.++++ ..+++|+++ .++++++++++.|
T Consensus 295 ~~nfi~~~~~----~~~~l~~~L~~~gi~vr~~~~~~~~~~~iRis~---~~~~e~~~l~~al 350 (351)
T PRK01688 295 ETNYILARFT----ASSAVFKSLWDQGIILRDQNKQPGLSNCLRITI---GTREECQRVIDAL 350 (351)
T ss_pred CCcEEEEEcC----CHHHHHHHHHHCCeEEEECCCcCCCCCeEEEeC---CCHHHHHHHHHhh
Confidence 6788888775 2578999999999999854 257899993 3789999999887
No 181
>TIGR01265 tyr_nico_aTase tyrosine/nicotianamine aminotransferases. This subfamily of pyridoxal phosphate-dependent enzymes includes known examples of both tyrosine aminotransferase from animals and nicotianamine aminotransferase from barley.
Probab=99.85 E-value=7e-20 Score=156.80 Aligned_cols=219 Identities=15% Similarity=0.176 Sum_probs=146.2
Q ss_pred hhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCccc-ccccCCCCCCEEE--
Q psy6548 12 VPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLL-AIHYEDVRPDIVI-- 87 (242)
Q Consensus 12 ~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~-~~~~~~~~~~~~~-- 87 (242)
++. +...+.+++++++..++|++|. +.+.+.+++|+++|++||+++|+||+|.+|...+..+ ....+.-..++++
T Consensus 159 ~~~l~~~~~~~~~~v~i~~p~NPtG~-~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~ 237 (403)
T TIGR01265 159 LDGLEALADEKTVAIVVINPSNPCGS-VFSRDHLQKIAEVARKLGIPIIADEIYGHMVFGDAPFIPMASFASIVPVLSLG 237 (403)
T ss_pred HHHHHHHhCcCccEEEEecCCCCCCC-CCCHHHHHHHHHHHHHCCCEEEEEccccccccCCCCccchhhhccCCcEEEEe
Confidence 444 3344557888888888999994 5566789999999999999999999998875444221 1111211223333
Q ss_pred -eecccc-CCccchheeEeCh--h-----hhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHh---ccHHHHHHHHHHHHH
Q psy6548 88 -LGKALS-GGLYPISAVLADD--E-----VMGTLVPGTHGSTYGGNPLACKLAMTALDVILE---ENMIENAYKMGEIFR 155 (242)
Q Consensus 88 -~sK~~~-~g~~~~g~~~~~~--~-----~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~---~~~~~~~~~~~~~l~ 155 (242)
|||.|+ +| +|+||++++. . +++.+.... ..+++.+.+++.++.++++.... +...+.++++++.+.
T Consensus 238 S~SK~~~~pG-lRiG~~v~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~ 315 (403)
T TIGR01265 238 GISKRWVVPG-WRLGWIIIHDPHGIFRDTVLQGLKNLL-QRILGPATIVQGALPDILENTPQEFFDGKISVLKSNAELCY 315 (403)
T ss_pred ecccccCCCc-ceEEEEEEeCchhhhHHHHHHHHHHHh-hhhcCCChHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHH
Confidence 899977 88 9999998742 2 333333221 12345677788777766653111 234556667777777
Q ss_pred HHHHhhcCCCCCCeEeeeceeEEEEecCCc----hhHHHHHHHH-HHCCceeccC----CCCEEEEeccCcCCHHHHHHH
Q psy6548 156 SELRSRLSPDIVPVVRGKGLLNAIVLDKSI----LEVYDVCIKM-KDAGLVTKPI----SNNIIRLSPALNITEQELREG 226 (242)
Q Consensus 156 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~l-~~~gi~~~~~----~~~~lR~~~~~~~t~e~i~~~ 226 (242)
+.| +.++ ......+..|+++|++++... .+..++++.| .++||.+.|+ ..+++|+++. .++++++++
T Consensus 316 ~~L-~~~~-~~~~~~p~~g~f~~~~~~~~~~~~~~~~~~~~~~l~~~~gv~v~pg~~f~~~~~iRis~~--~~~~~l~~~ 391 (403)
T TIGR01265 316 EEL-KDIP-GLVCPKPEGAMYLMVKLELELFPEIKDDVDFCEKLVREESVICLPGSAFGLPNWVRITIT--VPESMLEEA 391 (403)
T ss_pred HHH-hcCC-CceecCCCceeEEEEeccccccCCCCCHHHHHHHHHHhCCEEEeCccccCCCCeEEEEec--CCHHHHHHH
Confidence 777 5543 222223557899999986531 2467788886 4789999886 3679999954 578899999
Q ss_pred HHHHHHHHHHH
Q psy6548 227 LDIIINTINTM 237 (242)
Q Consensus 227 ~~~l~~~l~~~ 237 (242)
+++|.+.+++.
T Consensus 392 l~~l~~~~~~~ 402 (403)
T TIGR01265 392 CSRIKEFCERH 402 (403)
T ss_pred HHHHHHHHHhc
Confidence 99999888653
No 182
>PRK13355 bifunctional HTH-domain containing protein/aminotransferase; Provisional
Probab=99.85 E-value=5.7e-20 Score=161.82 Aligned_cols=218 Identities=16% Similarity=0.156 Sum_probs=141.4
Q ss_pred Chhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCccc-ccccCCCCCC--EE
Q psy6548 11 QVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLL-AIHYEDVRPD--IV 86 (242)
Q Consensus 11 d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~-~~~~~~~~~~--~~ 86 (242)
|+++ +...+++++++++.+++|++|.+ .+++.+++|+++|++||++||+||+|.+|...+... .... ..++ ++
T Consensus 270 d~~~l~~~~~~~~k~i~i~nP~NPTG~v-~~~~~l~~i~~~a~~~~~~ii~DE~Y~~~~~~~~~~~s~~~--~~~~~~vi 346 (517)
T PRK13355 270 DIDDIRSKITSRTKAIVIINPNNPTGAL-YPREVLQQIVDIAREHQLIIFSDEIYDRLVMDGLEHTSIAS--LAPDLFCV 346 (517)
T ss_pred CHHHHHHhcCcCceEEEEECCCCCCCcC-cCHHHHHHHHHHHHHcCcEEEEehhhhhhcCCCCCcccHHH--hCCCCeEE
Confidence 4555 44445678888888889999955 467889999999999999999999998764333211 1111 1223 22
Q ss_pred ---Eeecccc-CCccchheeEeC--hh----hhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHh-ccHH---HHHHHHHH
Q psy6548 87 ---ILGKALS-GGLYPISAVLAD--DE----VMGTLVPGTHGSTYGGNPLACKLAMTALDVILE-ENMI---ENAYKMGE 152 (242)
Q Consensus 87 ---~~sK~~~-~g~~~~g~~~~~--~~----~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~-~~~~---~~~~~~~~ 152 (242)
+|||.++ +| +|+||++.+ ++ +++.+... ....++.+.+++.++.++++.... +++. ....+.++
T Consensus 347 ~~~S~SK~~~~~G-~RiG~~i~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~q~a~~~aL~~~~~~~~~~~~~~~~~~~r~ 424 (517)
T PRK13355 347 TFSGLSKSHMIAG-YRIGWMILSGNKRIAKDYIEGLNML-ANMRLCSNVPAQSIVQTALGGHQSVKDYLVPGGRVYEQRE 424 (517)
T ss_pred EEecchhhccCcc-cceEEEEeeCchhhHHHHHHHHHHH-hcCcCCcChHHHHHHHHHhcCCccHHHHHHHHHHHHHHHH
Confidence 2899997 89 999999843 43 33333211 122245667788777777742110 1111 23344567
Q ss_pred HHHHHHHhhcCCCCCCeEeeeceeEEEEecCCc---hhHHHH-HHHHHHCCceeccC------CCCEEEEeccCcCCHHH
Q psy6548 153 IFRSELRSRLSPDIVPVVRGKGLLNAIVLDKSI---LEVYDV-CIKMKDAGLVTKPI------SNNIIRLSPALNITEQE 222 (242)
Q Consensus 153 ~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-~~~l~~~gi~~~~~------~~~~lR~~~~~~~t~e~ 222 (242)
.+.+.| +.++ ++....+..++++|++++... .+..++ .+.|.++||.+.|+ +++++|+++ ..++++
T Consensus 425 ~l~~~L-~~~~-g~~~~~p~g~fy~~~~l~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~F~~~~~~~~Ris~--~~~~~~ 500 (517)
T PRK13355 425 LVYNAL-NAIP-GISAVKPKAAFYIFPKIDVKKFNIHDDEQFALDLLHDKKVLIVQGTGFNWDKPDHFRVVY--LPRLED 500 (517)
T ss_pred HHHHHH-hcCC-CcccCCCCeeeEEEeecCcccCCCCCHHHHHHHHHHhCCEEEeCcchhCCCCcCEEEEEe--CCCHHH
Confidence 777777 5553 222333456777887776420 123344 45677889999875 367999994 578999
Q ss_pred HHHHHHHHHHHHHHH
Q psy6548 223 LREGLDIIINTINTM 237 (242)
Q Consensus 223 i~~~~~~l~~~l~~~ 237 (242)
+++++++|.+.+...
T Consensus 501 l~~a~~rl~~~~~~~ 515 (517)
T PRK13355 501 LEDAMDRLADFFSYY 515 (517)
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999998764
No 183
>KOG0257|consensus
Probab=99.85 E-value=3e-21 Score=157.82 Aligned_cols=209 Identities=15% Similarity=0.235 Sum_probs=146.9
Q ss_pred hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCc---ccccccCCC---CCCEEEe
Q psy6548 15 KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGK---LLAIHYEDV---RPDIVIL 88 (242)
Q Consensus 15 ~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~---~~~~~~~~~---~~~~~~~ 88 (242)
+...+.+|++|+++.++|++| -+.+++.|++|+++|++||+++|+||+|..+...+. .++ ...|+ +..+-++
T Consensus 166 e~~~t~kTk~Ii~ntPhNPtG-kvfsReeLe~ia~l~~k~~~lvisDevYe~~v~d~~~h~r~a-slPgm~ertitvgS~ 243 (420)
T KOG0257|consen 166 ESKITEKTKAIILNTPHNPTG-KVFSREELERIAELCKKHGLLVISDEVYEWLVYDGNKHIRIA-SLPGMYERTITVGSF 243 (420)
T ss_pred HhhccCCccEEEEeCCCCCcC-cccCHHHHHHHHHHHHHCCEEEEEhhHhHHHhhCCCcceeee-cCCchhheEEEeccc
Confidence 556677899999999999999 566889999999999999999999999976544443 112 11233 3334458
Q ss_pred ecccc-CCccchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHH---h-------ccHHHHHHHHHHHHHHH
Q psy6548 89 GKALS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVIL---E-------ENMIENAYKMGEIFRSE 157 (242)
Q Consensus 89 sK~~~-~g~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~---~-------~~~~~~~~~~~~~l~~~ 157 (242)
||+|+ .| ||+||+++++.+.....+.....++..+...+.|..+++..-. + .++.+.++++++.+.+.
T Consensus 244 gKtf~~TG-WrlGW~igp~~L~~~~~~vh~~~~~~~~Tp~q~A~a~a~~~~~~~~~p~~~y~~~~~~~~y~~krdil~k~ 322 (420)
T KOG0257|consen 244 GKTFGVTG-WRLGWAIGPKHLYSALFPVHQNFVFTCPTPIQEASAAAFALELACLQPGGSYFITELVKEYKEKRDILAKA 322 (420)
T ss_pred cceeeeee-eeeeeeechHHhhhhHHHHhhccccccCcHHHHHHHHHHhhhhhccCCcchhHHHHHHHHHHHHHHHHHHH
Confidence 99999 89 9999999998898888876666666666666666555544322 1 23678889999999999
Q ss_pred HHhhcCCCCCCeEeeeceeEEEEecCCc-----------hhHHHHHHHHHH-CCceeccC-----------CCCEEEEec
Q psy6548 158 LRSRLSPDIVPVVRGKGLLNAIVLDKSI-----------LEVYDVCIKMKD-AGLVTKPI-----------SNNIIRLSP 214 (242)
Q Consensus 158 l~~~l~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~l~~-~gi~~~~~-----------~~~~lR~~~ 214 (242)
| ..++ .....+..++++|.+++..+ -+.-.+.+.|.+ .|+.+-|. ..+.+|++
T Consensus 323 L-~~lg--~~v~~p~gayyl~adfs~~~~~~~~~~~~~~~~d~~~~~wl~~~~Gv~~IP~saF~s~~~~~~~~~~~r~~- 398 (420)
T KOG0257|consen 323 L-EELG--LKVTGPEGAYYLWADFSLAKSWPFFEEILEKPDDFKFVRWLIKEGGVVVIPPSAFGSREHIKVAERLVRFC- 398 (420)
T ss_pred H-HhcC--CccccCCCceEEEEeccccccCCcchhhccCCCceeeehhhhccCcEEEeCchhcCCchhhHHHHHHHHHH-
Confidence 9 7775 33344566788999888211 012235666664 47776554 13456666
Q ss_pred cCcCCHHHHHHHHHHHH
Q psy6548 215 ALNITEQELREGLDIII 231 (242)
Q Consensus 215 ~~~~t~e~i~~~~~~l~ 231 (242)
..-+.+.++.+.++|+
T Consensus 399 -~~k~~~~L~~a~e~l~ 414 (420)
T KOG0257|consen 399 -FCKADETLRKAIERLK 414 (420)
T ss_pred -HHhhHHHHHHHHHHHh
Confidence 5556666777777765
No 184
>PLN02721 threonine aldolase
Probab=99.85 E-value=4.8e-20 Score=155.08 Aligned_cols=210 Identities=15% Similarity=0.193 Sum_probs=135.0
Q ss_pred CCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccC-cccccccCCCCCC--EEEeeccccCCc
Q psy6548 20 PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTG-KLLAIHYEDVRPD--IVILGKALSGGL 96 (242)
Q Consensus 20 ~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g-~~~~~~~~~~~~~--~~~~sK~~~~g~ 96 (242)
++++++++++++++.|+..++.+.+++|.++|++||+++|+||+|. ++... ............| ++++||++++
T Consensus 136 ~~~~~v~l~~~~~np~G~~~~~~~l~~l~~l~~~~g~~livD~a~~-~~~~~~~~~~~~~~~~~~d~~~~s~sK~l~~-- 212 (353)
T PLN02721 136 PTTRLICLENTHANCGGRCLSVEYTDKVGELAKRHGLKLHIDGARI-FNASVALGVPVHRLVKAADSVSVCLSKGLGA-- 212 (353)
T ss_pred CcceEEEEeccccccCCccccHHHHHHHHHHHHHcCCEEEEEchhh-hcchhhhCCCHHHHhhhCCEEEEecccccCC--
Confidence 4789999999876655577778889999999999999999999985 21110 0001111111234 3448899984
Q ss_pred cchhe-eEeChhhhhccCCCCCCCCCCCCHH--HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhhcCCCCCCeEeee
Q psy6548 97 YPISA-VLADDEVMGTLVPGTHGSTYGGNPL--ACKLAMTALDVILEENMIENAYKMGEIFRSELRSRLSPDIVPVVRGK 173 (242)
Q Consensus 97 ~~~g~-~~~~~~~~~~l~~~~~~~~~~~~~~--~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~ 173 (242)
++|+ +++++++++.+...........+.. ..+++..+++.... ..++..++++++++.| +.++.......+..
T Consensus 213 -~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~l~~~L-~~~~~~~~~~~~~~ 288 (353)
T PLN02721 213 -PVGSVIVGSKSFIRKAKRLRKTLGGGMRQVGVLAAAALVALQENVP--KLEDDHKKAKLLAEGL-NQIKGLRVNVAAVE 288 (353)
T ss_pred -ceeeEEecCHHHHHhHHHHHHhcCCCeehhHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH-HhCCCcEEecCCcc
Confidence 3454 6678888776543211111111122 22223333332211 2233456677888888 66532101011233
Q ss_pred ceeEEEEecCC-chhHHHHHHHHHHCCceeccCCCCEEEEeccCcCCHHHHHHHHHHHHHHHHH
Q psy6548 174 GLLNAIVLDKS-ILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINT 236 (242)
Q Consensus 174 ~~~~~~~~~~~-~~~~~~~~~~l~~~gi~~~~~~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~ 236 (242)
+.+++++++.. ..+.+.++++|.++||.+.+.+.+++|+++++.++++|+++++++|++++..
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~L~~~gi~v~~~~~~~lR~~~~~~~~~~~i~~~~~~l~~~~~~ 352 (353)
T PLN02721 289 TNIVYFDITDGSRITAEKLCKSLEEHGVLLMPGNSSRIRVVTHHQISDSDVQYTLSCFQQAALT 352 (353)
T ss_pred ceEEEEEccCCccccHHHHHHHHHhCCcEEecCCCceEEEEecCcCCHHHHHHHHHHHHHHhhc
Confidence 56788887642 1357889999999999999998899999999899999999999999987653
No 185
>PRK09265 aminotransferase AlaT; Validated
Probab=99.85 E-value=9.2e-20 Score=156.13 Aligned_cols=219 Identities=17% Similarity=0.131 Sum_probs=143.9
Q ss_pred hhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcc-cccccCCCCCCEEE--
Q psy6548 12 VPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKL-LAIHYEDVRPDIVI-- 87 (242)
Q Consensus 12 ~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~-~~~~~~~~~~~~~~-- 87 (242)
++. +...+.++++++++.++|++|. +.+.+.+++|+++|++||+++|+||+|.++...+.. .......-...+++
T Consensus 158 ~~~l~~~~~~~~~~v~l~~P~NPtG~-~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~ 236 (404)
T PRK09265 158 LDDIRSKITPRTKAIVIINPNNPTGA-VYSKELLEEIVEIARQHNLIIFADEIYDKILYDGAVHISIASLAPDLLCVTFN 236 (404)
T ss_pred HHHHHHhccccceEEEEECCCCCCCc-CCCHHHHHHHHHHHHHCCCEEEEehhhhhccCCCCCcCCHHHcCCCceEEEEe
Confidence 444 3333557888888888999995 456688999999999999999999999876433321 11111111112332
Q ss_pred -eecccc-CCccchheeEe--Chh----hhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHh-ccHH---HHHHHHHHHHH
Q psy6548 88 -LGKALS-GGLYPISAVLA--DDE----VMGTLVPGTHGSTYGGNPLACKLAMTALDVILE-ENMI---ENAYKMGEIFR 155 (242)
Q Consensus 88 -~sK~~~-~g~~~~g~~~~--~~~----~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~-~~~~---~~~~~~~~~l~ 155 (242)
|||.++ +| +|+||++. +++ +++.+... ...+++.+.+++.++.++++..+. +.+. +.++++++.+.
T Consensus 237 S~SK~~~~pG-lRiG~~v~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~r~~~~ 314 (404)
T PRK09265 237 GLSKAYRVAG-FRVGWMVLSGPKKHAKGYIEGLDML-ASMRLCANVPAQHAIQTALGGYQSINELILPGGRLYEQRDRAW 314 (404)
T ss_pred cchhhccCcc-cceEEEEEeCchHHHHHHHHHHHHH-hccccCCCcHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHH
Confidence 899996 89 99999985 333 33333211 122345677777777776642111 1121 34556677777
Q ss_pred HHHHhhcCCCCCCeEeeeceeEEEEecCCc----hhHHHHHHHHHHCCceeccC------CCCEEEEeccCcCCHHHHHH
Q psy6548 156 SELRSRLSPDIVPVVRGKGLLNAIVLDKSI----LEVYDVCIKMKDAGLVTKPI------SNNIIRLSPALNITEQELRE 225 (242)
Q Consensus 156 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~l~~~gi~~~~~------~~~~lR~~~~~~~t~e~i~~ 225 (242)
+.| +.++ .+....+..|+++|++++... .+.+.+.+.|.++||.+.|+ +++++|++. ..++|++++
T Consensus 315 ~~L-~~~~-~~~~~~p~~g~~l~~~~~~~~~~~~~~~~~~~~~l~~~gv~v~pg~~F~~~~~~~~Ri~~--~~~~e~l~~ 390 (404)
T PRK09265 315 ELL-NAIP-GVSCVKPKGALYAFPKLDPKVYPIHDDEQFVLDLLLQEKVLLVQGTGFNWPEPDHFRIVT--LPRVDDLEE 390 (404)
T ss_pred HHH-hcCC-CCcccCCCcceEEEEEecccccCCCCHHHHHHHHHHhCCEEEECchhhCCCCCCeEEEEe--CCCHHHHHH
Confidence 777 5553 222334556889999887531 23455778888999999875 257899995 468999999
Q ss_pred HHHHHHHHHHHH
Q psy6548 226 GLDIIINTINTM 237 (242)
Q Consensus 226 ~~~~l~~~l~~~ 237 (242)
++++|++++++.
T Consensus 391 ~l~rl~~~l~~~ 402 (404)
T PRK09265 391 AIGRIGRFLSGY 402 (404)
T ss_pred HHHHHHHHHHHh
Confidence 999999988764
No 186
>PTZ00377 alanine aminotransferase; Provisional
Probab=99.85 E-value=5.8e-20 Score=160.49 Aligned_cols=213 Identities=14% Similarity=0.109 Sum_probs=141.2
Q ss_pred CEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccC-ccc-cc----ccCCC----CCCEEE---
Q psy6548 21 NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTG-KLL-AI----HYEDV----RPDIVI--- 87 (242)
Q Consensus 21 ~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g-~~~-~~----~~~~~----~~~~~~--- 87 (242)
+++++++.+++|++|. +.+.+.+++|+++|++||++||+||+|.++...+ ..+ ++ ..+.- ...+++
T Consensus 218 ~~k~l~l~~P~NPTG~-~~s~e~~~~i~~~a~~~~~~iI~De~Y~~l~~~~~~~~~s~~~~~~~l~~~~~~~~~vi~~~S 296 (481)
T PTZ00377 218 TPRALVVINPGNPTGQ-VLTRDVMEEIIKFCYEKGIVLMADEVYQENIYDGEKPFISFRKVLLELPAEYNTDVELVSFHS 296 (481)
T ss_pred CeeEEEEECCCCCCCc-CCCHHHHHHHHHHHHHCCCEEEEehhhHhhccCCCCCcccHHHHHHhhcccccCCeEEEEEec
Confidence 7888777788999995 5577889999999999999999999998764322 111 11 01110 112333
Q ss_pred eeccc-c-CCccchheeEe---ChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHH-----------Hh-ccHHHHHHHH
Q psy6548 88 LGKAL-S-GGLYPISAVLA---DDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVI-----------LE-ENMIENAYKM 150 (242)
Q Consensus 88 ~sK~~-~-~g~~~~g~~~~---~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~-----------~~-~~~~~~~~~~ 150 (242)
|||++ + +| +|+||+++ ++++++.+.... ...++.+.+++.++.++++.. +. ....+.++++
T Consensus 297 ~SK~~~~~~G-lRiG~~~~~~~p~~li~~l~~~~-~~~~~~~~~~Q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r 374 (481)
T PTZ00377 297 TSKGIIGECG-RRGGYFELTNIPPEVREQIYKLA-SINLCSNVVGQLMTGLMCNPPREGDASYPLYKRERDAIFTSLKRR 374 (481)
T ss_pred CCcccccCCc-CceEEEEEeCCCHHHHHHHHHHh-heecCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHHHHH
Confidence 89985 6 79 99999986 788888776633 234467778888877776421 00 1222345667
Q ss_pred HHHHHHHHHhhcCCCCCCeEeeeceeEEEEecCCc-h----------hHHHH-HHHHHHCCceeccC-------CCCEEE
Q psy6548 151 GEIFRSELRSRLSPDIVPVVRGKGLLNAIVLDKSI-L----------EVYDV-CIKMKDAGLVTKPI-------SNNIIR 211 (242)
Q Consensus 151 ~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~-~----------~~~~~-~~~l~~~gi~~~~~-------~~~~lR 211 (242)
++.+.+.| +.++ ++....+..|+++|+++.-.. . +...+ .+.|.++||.+.|+ +.+++|
T Consensus 375 r~~l~~~L-~~~~-g~~~~~p~gg~fl~~~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pG~~F~~~~~~~~~R 452 (481)
T PTZ00377 375 AELLTDEL-NKIE-GVSCQPVEGAMYAFPRIELPEKAIQEAKERGLAPDVLYCLELLESTGIVVVPGSGFGQKPGTYHFR 452 (481)
T ss_pred HHHHHHHH-hcCC-CcEeecCCeeEEEEeeccCchhhHHHHHhcCCCcHHHHHHHHHHHcCEEEeCCcccCCCCCCCEEE
Confidence 77777777 5553 222223445788887654210 0 12334 35556779999876 235899
Q ss_pred EeccCcCCHHHHHHHHHHHHHHHHHHhhh
Q psy6548 212 LSPALNITEQELREGLDIIINTINTMAAK 240 (242)
Q Consensus 212 ~~~~~~~t~e~i~~~~~~l~~~l~~~~~~ 240 (242)
+++. .+++++++++++|++.+++..++
T Consensus 453 ls~~--~~~e~l~~~l~rl~~~~~~~~~~ 479 (481)
T PTZ00377 453 ITIL--PPEEQIEEMVKKIKEFHESFMKK 479 (481)
T ss_pred EEEC--CCHHHHHHHHHHHHHHHHHHHHh
Confidence 9954 67889999999999999876554
No 187
>TIGR01141 hisC histidinol-phosphate aminotransferase. Histidinol-phosphate aminotransferase is a pyridoxal-phosphate dependent enzyme.
Probab=99.85 E-value=3.6e-20 Score=155.52 Aligned_cols=204 Identities=16% Similarity=0.207 Sum_probs=143.4
Q ss_pred Chhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEE---
Q psy6548 11 QVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIV--- 86 (242)
Q Consensus 11 d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~--- 86 (242)
|++. +...++++++|+++.++|++|.+.+ .+.++++++.|+ +|+++|+||+|.++...+.... .....++++
T Consensus 131 d~~~l~~~~~~~~~~v~l~~p~NptG~~~~-~~~~~~l~~~~~-~~~~ii~D~~y~~~~~~~~~~~--~~~~~~~~i~~~ 206 (346)
T TIGR01141 131 DLEDILVAIDDKPKLVFLCSPNNPTGNLLS-RSDIEAVLERTP-EDALVVVDEAYGEFSGEPSTLP--LLAEYPNLIVLR 206 (346)
T ss_pred CHHHHHHhcCCCCCEEEEeCCCCCCCCCCC-HHHHHHHHHhCC-CCcEEEEECchhhhcCCccHHH--HHhhCCCEEEEe
Confidence 4555 4444667899999999999996665 455666666555 5999999999987643221111 111123433
Q ss_pred Eeecccc-CCccchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHHHHhhcCC
Q psy6548 87 ILGKALS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVIL-EENMIENAYKMGEIFRSELRSRLSP 164 (242)
Q Consensus 87 ~~sK~~~-~g~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~-~~~~~~~~~~~~~~l~~~l~~~l~~ 164 (242)
++||+++ +| +|+||+++++++++.+.+. ...++.+++++.++.++++... .+...++++++++.+++.| +.++
T Consensus 207 S~sK~~g~~G-~r~G~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L-~~~~- 281 (346)
T TIGR01141 207 TLSKAFGLAG-LRIGYAIANAEIIDALNKV--RAPFNLSRLAQAAAIAALRDDDFIEKTVEEINAERERLYDGL-KKLP- 281 (346)
T ss_pred hhhHhhhchh-hhceeeecCHHHHHHHHhc--cCCCCCCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHH-HhcC-
Confidence 3889996 78 8999999999998888763 2345667888877776665432 2345677778888888888 6553
Q ss_pred CCCCeEeeeceeEEEEecCCchhHHHHHHHHHHCCceeccCC-----CCEEEEeccCcCCHHHHHHHHHHH
Q psy6548 165 DIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPIS-----NNIIRLSPALNITEQELREGLDII 230 (242)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~-----~~~lR~~~~~~~t~e~i~~~~~~l 230 (242)
++. ..+..|.++|+.++. +.+++.++|.++||.+.++. .+++|++++ ++++++++++.|
T Consensus 282 g~~-~~~~~g~~~~~~~~~---~~~~~~~~L~~~gI~v~~g~~f~~~~~~iRls~~---~~~~i~~~~~~l 345 (346)
T TIGR01141 282 GLE-VYPSDANFVLIRFPR---DADALFEALLEKGIIVRDLNSYPGLPNCLRITVG---TREENDRFLAAL 345 (346)
T ss_pred CCE-ECCCcCCEEEEecCC---CHHHHHHHHHHCCeEEEeCCCcCCCCCeEEEecC---CHHHHHHHHHHh
Confidence 121 223457888888864 46889999999999998863 588999944 889999999876
No 188
>PLN02376 1-aminocyclopropane-1-carboxylate synthase
Probab=99.85 E-value=1.7e-19 Score=157.46 Aligned_cols=210 Identities=16% Similarity=0.159 Sum_probs=138.5
Q ss_pred CCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCccc-c---c-ccCC---CCCC-E---EE
Q psy6548 20 PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLL-A---I-HYED---VRPD-I---VI 87 (242)
Q Consensus 20 ~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~-~---~-~~~~---~~~~-~---~~ 87 (242)
.+++++++.+++||+|. +.+.+.+++|+++|++||++||+||+|.++...+..+ + . ...+ ..++ + .+
T Consensus 198 ~~~k~l~l~nP~NPTG~-~~s~e~l~~L~~~a~~~~i~lI~DEiY~~~~f~~~~~~si~~l~~~~~~~~~~~~~v~vv~S 276 (496)
T PLN02376 198 KKVKGLILTNPSNPLGT-MLDKDTLTNLVRFVTRKNIHLVVDEIYAATVFAGGDFVSVAEVVNDVDISEVNVDLIHIVYS 276 (496)
T ss_pred CCeeEEEEcCCCCCCCc-cCCHHHHHHHHHHHHHcCCEEEEEcCccccccCCCCcccHHHhhccccccccCCCeEEEEEe
Confidence 57898899999999995 5577889999999999999999999998754333211 1 1 1111 1223 2 23
Q ss_pred eecccc-CCccchheeEeC-hhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHh-cc----HHHHHHHHHHHHHHHHHh
Q psy6548 88 LGKALS-GGLYPISAVLAD-DEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILE-EN----MIENAYKMGEIFRSELRS 160 (242)
Q Consensus 88 ~sK~~~-~g~~~~g~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~-~~----~~~~~~~~~~~l~~~l~~ 160 (242)
|||.|+ +| +|+||++++ +.+.+.+... ......+.+++.++.+.++...- +. ..+.+++.++.+.+.| +
T Consensus 277 ~SK~~glpG-lRvG~li~~~~~l~~~~~~~--~~~~~vs~~~Q~a~~~~L~d~~~~~~~l~~~r~~l~~r~~~l~~~L-~ 352 (496)
T PLN02376 277 LSKDMGLPG-FRVGIVYSFNDSVVSCARKM--SSFGLVSSQTQLMLASMLSDDQFVDNFLMESSRRLGIRHKVFTTGI-K 352 (496)
T ss_pred ccccCCCCc-ceEEEEEECCHHHHHHHHHH--hhcCCCCHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHHHH-H
Confidence 899998 99 999999985 5555544332 11223566677666555542110 11 2344455556666666 4
Q ss_pred hcCCCCCCeEeeeceeEEEEecCCc------hhHHHHHHHHHHC-CceeccC------CCCEEEEeccCcCCHHHHHHHH
Q psy6548 161 RLSPDIVPVVRGKGLLNAIVLDKSI------LEVYDVCIKMKDA-GLVTKPI------SNNIIRLSPALNITEQELREGL 227 (242)
Q Consensus 161 ~l~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~-gi~~~~~------~~~~lR~~~~~~~t~e~i~~~~ 227 (242)
+.+ +....+..|+++|++++... ....++.+.+.++ ||.+.|+ .++++|+++.. .+++++++++
T Consensus 353 ~~g--i~~~~~~aG~flwi~l~~~~~~~~~~~~e~~l~~~ll~~~gV~v~pGs~F~~~~~g~~Ri~fa~-~~~~~l~~al 429 (496)
T PLN02376 353 KAD--IACLTSNAGLFAWMDLRHLLRDRNSFESEIELWHIIIDKVKLNVSPGSSFRCTEPGWFRICFAN-MDDDTLHVAL 429 (496)
T ss_pred HCC--CcccCCCceEEEEEEchhhhccCCchhHHHHHHHHHHHcCCEEEeCccccCCCCCCEEEEEeeC-CCHHHHHHHH
Confidence 432 22223456799999986421 1235688888764 9999986 35799999543 4789999999
Q ss_pred HHHHHHHHHH
Q psy6548 228 DIIINTINTM 237 (242)
Q Consensus 228 ~~l~~~l~~~ 237 (242)
++|++.+.+.
T Consensus 430 ~rl~~~l~~~ 439 (496)
T PLN02376 430 GRIQDFVSKN 439 (496)
T ss_pred HHHHHHHHHh
Confidence 9999988653
No 189
>PRK10874 cysteine sulfinate desulfinase; Provisional
Probab=99.84 E-value=3.8e-19 Score=152.19 Aligned_cols=212 Identities=13% Similarity=0.137 Sum_probs=148.5
Q ss_pred Chhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEEee
Q psy6548 11 QVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILG 89 (242)
Q Consensus 11 d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~s 89 (242)
|+++ +...++++++++++.++|++|.+.+ +++|.++|++||+++++|++|+ ++.. +.... ....|+.++|
T Consensus 149 d~~~l~~~i~~~t~lv~i~~~~n~tG~~~~----~~~i~~l~~~~g~~~ivD~a~~-~g~~--~~~~~--~~~~d~~~~s 219 (401)
T PRK10874 149 DVDLLPELITPRTRILALGQMSNVTGGCPD----LARAITLAHQAGMVVMVDGAQG-AVHF--PADVQ--ALDIDFYAFS 219 (401)
T ss_pred CHHHHHHhcCcCcEEEEEeCCcccccCcCC----HHHHHHHHHHcCCEEEEECCcc-cccc--cCCch--hcCCCEEEEe
Confidence 4555 4444678999999999999998876 8999999999999999999995 2212 11222 2346777755
Q ss_pred --ccccCCccchheeEeChhhhhccCCCCCCC------------------CC---CCCHHHHHHHHHHHHHHHhc---cH
Q psy6548 90 --KALSGGLYPISAVLADDEVMGTLVPGTHGS------------------TY---GGNPLACKLAMTALDVILEE---NM 143 (242)
Q Consensus 90 --K~~~~g~~~~g~~~~~~~~~~~l~~~~~~~------------------~~---~~~~~~~~~a~a~l~~~~~~---~~ 143 (242)
|.++ + .++|+++.++++++.+.+...++ .| +.+..++.+..++++.+.+. ..
T Consensus 220 ~~K~~g-p-~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Gt~~~~~~~al~~al~~l~~~g~~~~ 297 (401)
T PRK10874 220 GHKLYG-P-TGIGVLYGKSELLEAMSPWQGGGKMLTEVSFDGFTPQSAPWRFEAGTPNVAGVIGLSAALEWLADIDINQA 297 (401)
T ss_pred cccccC-C-CccEEEEEchHHHhcCCCeecCCcceEeeccCccCCCCChhhccCCCcCHHHHHHHHHHHHHHHHhCHHHH
Confidence 9766 3 35799999998888776432110 01 23445666666777766543 34
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCCeEeeeceeEEEEecCCchhHHHHHHHHHHCCceeccCC------------CCEEE
Q psy6548 144 IENAYKMGEIFRSELRSRLSPDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPIS------------NNIIR 211 (242)
Q Consensus 144 ~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~------------~~~lR 211 (242)
.++.+++++++++.| +.++. +.......+.++.+.++. .+.+++.+.|.++||.++++. .+.+|
T Consensus 298 ~~~~~~l~~~l~~~l-~~~~g-~~~~~~~~~~i~~~~~~~--~~~~~~~~~L~~~gI~v~~g~~~~~~~~~~~g~~~~iR 373 (401)
T PRK10874 298 ESWSRSLATLAEDAL-AKLPG-FRSFRCQDSSLLAFDFAG--VHHSDLVTLLAEYGIALRAGQHCAQPLLAALGVTGTLR 373 (401)
T ss_pred HHHHHHHHHHHHHHH-hcCCC-EEEeCCCCCcEEEEEECC--cCHHHHHHHHHHCCcEEeccccchHHHHHHhCCCCEEE
Confidence 667777788888888 55532 111111234566677654 356789999999999997642 47899
Q ss_pred EeccCcCCHHHHHHHHHHHHHHHHHH
Q psy6548 212 LSPALNITEQELREGLDIIINTINTM 237 (242)
Q Consensus 212 ~~~~~~~t~e~i~~~~~~l~~~l~~~ 237 (242)
++++.++|++|++++++.|+++++.+
T Consensus 374 iS~~~~nt~edid~ll~al~~~~~~~ 399 (401)
T PRK10874 374 ASFAPYNTQSDVDALVNAVDRALELL 399 (401)
T ss_pred EEecccCCHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999987754
No 190
>PRK09295 bifunctional cysteine desulfurase/selenocysteine lyase; Validated
Probab=99.84 E-value=3.7e-19 Score=152.51 Aligned_cols=211 Identities=16% Similarity=0.131 Sum_probs=148.5
Q ss_pred Chhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEEee
Q psy6548 11 QVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILG 89 (242)
Q Consensus 11 d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~s 89 (242)
|+++ +...+++++++++..++|++|.+.+ +++|.++|++||+++++|++|+ ++.. +..+. ...+|++++|
T Consensus 153 d~~~l~~~i~~~t~lv~l~~~~n~tG~~~~----~~~i~~~~~~~~~~vivD~a~~-~g~~--~~~~~--~~~~D~~~~s 223 (406)
T PRK09295 153 QLETLPALFDERTRLLAITHVSNVLGTENP----LAEMIALAHQHGAKVLVDGAQA-VMHH--PVDVQ--ALDCDFYVFS 223 (406)
T ss_pred CHHHHHHhcCCCcEEEEEecchhcccccCC----HHHHHHHHHHcCCEEEEEcccc-cCcc--ccCch--hcCCCEEEee
Confidence 4555 4444568999999999999998877 8999999999999999999995 3222 22222 2346777755
Q ss_pred --ccccCCccchheeEeChhhhhccCCCCCCC----------------------CCCCCHHHHHHHHHHHHHHHh---cc
Q psy6548 90 --KALSGGLYPISAVLADDEVMGTLVPGTHGS----------------------TYGGNPLACKLAMTALDVILE---EN 142 (242)
Q Consensus 90 --K~~~~g~~~~g~~~~~~~~~~~l~~~~~~~----------------------~~~~~~~~~~~a~a~l~~~~~---~~ 142 (242)
|.+| + .++|+++.++++++.+.+...++ ..+.+..+..++.++++.+.+ +.
T Consensus 224 ~~K~~g-p-~G~G~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~r~e~GT~~~~~~~~l~~al~~~~~~g~~~ 301 (406)
T PRK09295 224 GHKLYG-P-TGIGILYVKEALLQEMPPWEGGGSMIATVSLTEGTTWAKAPWRFEAGTPNTGGIIGLGAALDYVSALGLNN 301 (406)
T ss_pred hhhccC-C-CCcEEEEEchHhHhhCCCcccCCceeeeeecCCccccCCchhhcCCCCccHHHHHHHHHHHHHHHHhCHHH
Confidence 9665 3 45899999988877665421111 113455677777788887765 34
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCCeEeeeceeEEEEecCCchhHHHHHHHHHHCCceeccCC------------CCEE
Q psy6548 143 MIENAYKMGEIFRSELRSRLSPDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPIS------------NNII 210 (242)
Q Consensus 143 ~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~------------~~~l 210 (242)
+.++.+++.+++++.| ++++............++.+.++. ...+++.+.|.++||.++.+. ++.+
T Consensus 302 i~~~~~~l~~~l~~~l-~~~~~~~~~~~~~~~~iv~~~~~~--~~~~~~~~~L~~~gI~v~~g~~c~~~~~~~~~~~~~i 378 (406)
T PRK09295 302 IAEYEQNLMHYALSQL-ESVPDLTLYGPQNRLGVIAFNLGK--HHAYDVGSFLDNYGIAVRTGHHCAMPLMAYYNVPAMC 378 (406)
T ss_pred HHHHHHHHHHHHHHHH-hcCCCEEEeCCCCCceEEEEEECC--cCHHHHHHHHHhCCeEEeccccchHHHHHHHCCCCEE
Confidence 5677888888888888 655421111111224566677665 356778889999999997542 3579
Q ss_pred EEeccCcCCHHHHHHHHHHHHHHHH
Q psy6548 211 RLSPALNITEQELREGLDIIINTIN 235 (242)
Q Consensus 211 R~~~~~~~t~e~i~~~~~~l~~~l~ 235 (242)
|++++.++|++|++++++.|+++..
T Consensus 379 RiS~~~ynt~~did~l~~~l~~i~~ 403 (406)
T PRK09295 379 RASLAMYNTHEEVDRLVAGLQRIHR 403 (406)
T ss_pred EEEccCCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999988754
No 191
>PRK14809 histidinol-phosphate aminotransferase; Provisional
Probab=99.84 E-value=5.2e-20 Score=155.20 Aligned_cols=194 Identities=15% Similarity=0.224 Sum_probs=134.0
Q ss_pred CEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCE---EEeecccc-CCc
Q psy6548 21 NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDI---VILGKALS-GGL 96 (242)
Q Consensus 21 ~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~---~~~sK~~~-~g~ 96 (242)
+++++++++++|++|.+. +.+.+++++++|++ +++||+||+|.+|...+... .......++ .+|||.++ +|
T Consensus 154 ~~k~i~l~~p~NPTG~~~-s~~~~~~l~~~~~~-~~~iI~De~y~~~~~~~~~~--~~~~~~~~vi~~~SfSK~~~~~G- 228 (357)
T PRK14809 154 GERIVYLTSPHNPTGSEI-PLDEVEALAERTDE-ETLVVVDEAYGEFAERPSAV--ALVEERDDVAVLRTFSKAYGLAG- 228 (357)
T ss_pred CCcEEEEeCCCCCCCcCC-CHHHHHHHHHhCcc-CcEEEEechhhhccCCchhH--HHHhhCCCEEEEecchhHhcCcc-
Confidence 577888889999999555 56678888888865 78999999998875433211 111111233 33999998 89
Q ss_pred cchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHHHHhhcCCCCCCeEeeece
Q psy6548 97 YPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVIL-EENMIENAYKMGEIFRSELRSRLSPDIVPVVRGKGL 175 (242)
Q Consensus 97 ~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~-~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~ 175 (242)
+|+||+++++++++.+... ..+++.+.+++.++.++++.-. -+...+.++++++.+.+.| ... ..+..|+
T Consensus 229 lRiG~~~~~~~~~~~~~~~--~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~r~~l~~~L-~~~------~~~~~g~ 299 (357)
T PRK14809 229 LRLGYAVVPEEWADAYARV--NTPFAASELACRAGLAALDDDEHVERTVETARWAREYIREEL-DAP------TWESAGN 299 (357)
T ss_pred hhheeeecCHHHHHHHHHh--CCCCCCCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHh-cCc------cCCCCCC
Confidence 9999999999998888763 3356677888777776664210 0122334444444444444 221 1135678
Q ss_pred eEEEEecCCchhHHHHHHHHHHCCceeccCC----CCEEEEeccCcCCHHHHHHHHHHHHHHHH
Q psy6548 176 LNAIVLDKSILEVYDVCIKMKDAGLVTKPIS----NNIIRLSPALNITEQELREGLDIIINTIN 235 (242)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~----~~~lR~~~~~~~t~e~i~~~~~~l~~~l~ 235 (242)
++|+++++ ..++.+.|.++||.+.++. ++++|+++ .+.+++++++++|+++++
T Consensus 300 f~~~~~~~----~~~~~~~l~~~gv~v~~g~~f~~~~~iRls~---~~~~~~~~~l~~L~~~l~ 356 (357)
T PRK14809 300 FVLAEVGD----ASAVAEAAQERGVIVRDCTSFGLPECIRITC---GTREETERAVEVLNEVLA 356 (357)
T ss_pred EEEEECCC----HHHHHHHHHHCCEEEEECccCCCCCeEEEec---CCHHHHHHHHHHHHHHhc
Confidence 88888743 4678899999999998863 47899993 367899999999988764
No 192
>PLN02450 1-aminocyclopropane-1-carboxylate synthase
Probab=99.84 E-value=1.5e-19 Score=156.98 Aligned_cols=211 Identities=15% Similarity=0.136 Sum_probs=142.1
Q ss_pred CCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCccc-c-cccC------C--CCCCEE---
Q psy6548 20 PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLL-A-IHYE------D--VRPDIV--- 86 (242)
Q Consensus 20 ~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~-~-~~~~------~--~~~~~~--- 86 (242)
.+++++++.+++||+|. +.+.+.+++|+++|++||++||+||+|.++...+..+ . .... + ....++
T Consensus 190 ~~~k~v~l~nP~NPTG~-~~s~e~l~~ll~~a~~~~~~iI~DE~Y~~~~f~~~~~~s~l~~~~~~~~~~~~~~~~vi~l~ 268 (468)
T PLN02450 190 LKVKGVLITNPSNPLGT-TTTRTELNLLVDFITAKNIHLISDEIYSGTVFDSPGFVSVMEVLKDRKLENTDVSNRVHIVY 268 (468)
T ss_pred CCeeEEEEecCCCCCCc-ccCHHHHHHHHHHHHHCCcEEEEEccccccccCCCCcccHHHHhhhcccccCCCCCcEEEEE
Confidence 47888888889999995 5567889999999999999999999998753333211 1 1111 1 112233
Q ss_pred Eeecccc-CCccchheeEeChh-hhhccCCCCCCCCCCCCHHHHHHHHHHHHHHH-----hccHHHHHHHHHHHHHHHHH
Q psy6548 87 ILGKALS-GGLYPISAVLADDE-VMGTLVPGTHGSTYGGNPLACKLAMTALDVIL-----EENMIENAYKMGEIFRSELR 159 (242)
Q Consensus 87 ~~sK~~~-~g~~~~g~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~-----~~~~~~~~~~~~~~l~~~l~ 159 (242)
+|||.|+ +| +|+||++++++ +++.+... ......+.+++.++.++++... -++..+.+++.++.+.+.|
T Consensus 269 S~SK~~~l~G-lRiG~li~~~~~l~~~~~~~--~~~~~~s~~~Q~a~~~~L~~~~~~~~~l~~~~~~l~~rr~~l~~~L- 344 (468)
T PLN02450 269 SLSKDLGLPG-FRVGAIYSNDEMVVSAATKM--SSFGLVSSQTQYLLSALLSDKKFTKNYLEENQKRLKQRQKKLVSGL- 344 (468)
T ss_pred eccccCCCCC-ccEEEEEECCHHHHHHHHHH--hhcCCCCHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 3999998 99 99999999754 45544432 1112356777777666665321 0223456666777777777
Q ss_pred hhcCCCCCCeEeeeceeEEEEecCCc-----hhHHHHHHHHH-HCCceeccC------CCCEEEEeccCcCCHHHHHHHH
Q psy6548 160 SRLSPDIVPVVRGKGLLNAIVLDKSI-----LEVYDVCIKMK-DAGLVTKPI------SNNIIRLSPALNITEQELREGL 227 (242)
Q Consensus 160 ~~l~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~l~-~~gi~~~~~------~~~~lR~~~~~~~t~e~i~~~~ 227 (242)
+.++ +....+..|+++|++++... ....++.+.|. ++||.+.|+ +++++|+++.. .+++++++++
T Consensus 345 ~~~g--i~~~~~~~g~flwi~l~~~~~~~~~~~~~~l~~~ll~~~gV~v~PG~~f~~~~~g~~Rl~f~~-~~~~~l~~~l 421 (468)
T PLN02450 345 EAAG--IKCLKSNAGLFCWVDMRHLLKSNTFEAEMELWKKIVYEVKLNISPGSSCHCTEPGWFRVCFAN-MSEETLDLAM 421 (468)
T ss_pred HHcC--CcccCCCceEEEEEEchHhcCcCCchHHHHHHHHHHHhCCEEEeCccccCCCCCCEEEEEecC-CCHHHHHHHH
Confidence 5553 22233456789999986420 12345666766 479999886 25799999443 3789999999
Q ss_pred HHHHHHHHHHh
Q psy6548 228 DIIINTINTMA 238 (242)
Q Consensus 228 ~~l~~~l~~~~ 238 (242)
++|++++.+..
T Consensus 422 ~ri~~~l~~~~ 432 (468)
T PLN02450 422 KRLKSFVESDS 432 (468)
T ss_pred HHHHHHHHhcc
Confidence 99999987654
No 193
>PRK06855 aminotransferase; Validated
Probab=99.84 E-value=1.5e-19 Score=155.94 Aligned_cols=222 Identities=13% Similarity=0.151 Sum_probs=142.6
Q ss_pred Chhh--hcCCC-CCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCccc-cc-ccCCCCCCE
Q psy6548 11 QVPA--KLKSN-PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLL-AI-HYEDVRPDI 85 (242)
Q Consensus 11 d~~~--~~~~~-~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~-~~-~~~~~~~~~ 85 (242)
|+++ +.+.. ++++++++..++||+|. +.+.+.+++|+++|++||++||+||+|.++...+... .. ....-...+
T Consensus 158 d~~~l~~~~~~~~~~~~i~l~~P~NPTG~-~~s~~~~~~l~~~a~~~~~~II~De~Y~~l~~~~~~~~sl~~~~~~~~~I 236 (433)
T PRK06855 158 DLDDLENKVKYNPSIAGILLINPDNPTGA-VYPKEILREIVDIAREYDLFIICDEIYNNIVYNGKKTVPLSEVIGDVPGI 236 (433)
T ss_pred CHHHHHHHHhcCCCceEEEEECCCCCCCc-CCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCCCHHHHcCcCCeE
Confidence 4455 33432 46777777788999995 6677889999999999999999999998874433211 11 111111123
Q ss_pred E--Eeecccc-CCccchheeEeC-----h---hhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHH----hccHHHHHHHH
Q psy6548 86 V--ILGKALS-GGLYPISAVLAD-----D---EVMGTLVPGTHGSTYGGNPLACKLAMTALDVIL----EENMIENAYKM 150 (242)
Q Consensus 86 ~--~~sK~~~-~g~~~~g~~~~~-----~---~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~----~~~~~~~~~~~ 150 (242)
. +|||.++ +| +|+||++++ + .+++.+..... ...+.+.+++.++.++++... -++..+.++++
T Consensus 237 ~~~S~SK~~~~pG-lRiG~ii~p~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Q~a~~~~l~~~~~~~~~~~~~~~~~~r 314 (433)
T PRK06855 237 ALKGISKELPWPG-SRCGWIEVYNADKDEVFKKYINSILNAKM-IEVCSTTLPQMAIPRIMSHPEYKNYLKERNKRYEKR 314 (433)
T ss_pred EEecCccccCCCc-ceEEEEEEeCCchhhHHHHHHHHHHHhhc-cccCCChHHHHHHHHhhcCCcHHHHHHHHHHHHHHH
Confidence 3 3999997 99 999999872 2 23333322111 233456777777766664211 12344556666
Q ss_pred HHHHHHHHHhhcCCCCCCeEeeeceeEEEEecCCc--------------------------hhHHHHHHH-HHHCCceec
Q psy6548 151 GEIFRSELRSRLSPDIVPVVRGKGLLNAIVLDKSI--------------------------LEVYDVCIK-MKDAGLVTK 203 (242)
Q Consensus 151 ~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~--------------------------~~~~~~~~~-l~~~gi~~~ 203 (242)
++.+.+.| +.++ ......+..|+++|++++... .+..+++.. +.++||.+.
T Consensus 315 ~~~~~~~L-~~~~-~~~~~~p~gg~~~w~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~ 392 (433)
T PRK06855 315 SNIAYEKL-KDVP-GLKVNRTNGAFYMTVVFEDGVLNNKQSLPIENPEVKEYVEGLVKGPVSPDKRFVYYLLASTGICVV 392 (433)
T ss_pred HHHHHHHH-hcCC-CeeccCCCeeEEEeeccccccccccccCCcchhhhHHHHHHHHhcCCCchHHHHHHHHHHcCEEEe
Confidence 67777777 5442 222233456799999987530 024456655 557899998
Q ss_pred cC-----CCCEEEEeccCcCCHHHHHHHHHHHHHHHHHHh
Q psy6548 204 PI-----SNNIIRLSPALNITEQELREGLDIIINTINTMA 238 (242)
Q Consensus 204 ~~-----~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~~ 238 (242)
|+ ..+.+|+++.. .+.+++++++++|.+++++..
T Consensus 393 PG~~F~~~~~~~Rls~~~-~~~~~i~~~~~~l~~~~~~~~ 431 (433)
T PRK06855 393 PLSSFCTELNGFRVTLLE-RDEEKFEWIYQTLAEKIEEYL 431 (433)
T ss_pred cCCcCCCCCCceEEEECC-CcHHHHHHHHHHHHHHHHHHh
Confidence 86 22469999654 388999999999999998643
No 194
>PRK14807 histidinol-phosphate aminotransferase; Provisional
Probab=99.84 E-value=1e-19 Score=153.00 Aligned_cols=200 Identities=14% Similarity=0.173 Sum_probs=138.2
Q ss_pred hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEE---eecc
Q psy6548 15 KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVI---LGKA 91 (242)
Q Consensus 15 ~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~---~sK~ 91 (242)
+.+.+++++++++++++|++|...+ .+++.++|++++.++|+||+|.+|. +.... .......++++ |||.
T Consensus 142 ~~~~~~~~k~v~l~~p~NPtG~~~~----~~~l~~l~~~~~~~~ivDe~y~~~~--~~~~~-~~~~~~~~vi~~~S~SK~ 214 (351)
T PRK14807 142 KVIEKYQPKLVFLCNPNNPTGSVIE----REDIIKIIEKSRGIVVVDEAYFEFY--GNTIV-DVINEFENLIVLRTLSKA 214 (351)
T ss_pred HHhhccCCCEEEEeCCCCCCCCCCC----HHHHHHHHHhCCCEEEEeCcchhhc--ccchH-HHhhhCCCEEEEecchHh
Confidence 4444558899999999999997766 5666777778888999999997763 22111 11111123333 8999
Q ss_pred cc-CCccchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhhcCCCCCCeE
Q psy6548 92 LS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELRSRLSPDIVPVV 170 (242)
Q Consensus 92 ~~-~g~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~ 170 (242)
++ +| +|+||+++++++++.+..... .++.+.+++.++.++++...-++..+.++++++.+.+.| +.+.. +. ..
T Consensus 215 ~~~~G-lRiG~~v~~~~~~~~~~~~~~--~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~r~~l~~~l-~~~~g-~~-~~ 288 (351)
T PRK14807 215 FGLAG-LRVGYAVANENILKYLNLVKS--PYNINSLSQVIALKVLRTGVLKERVNYILNERERLIKEL-SKIPG-IK-VY 288 (351)
T ss_pred cccch-hceeeeecCHHHHHHHHHccC--CCCcCHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH-HhCCC-cE-EC
Confidence 98 99 999999999999888875322 345677888777777653222334455667777777777 55432 21 22
Q ss_pred eeeceeEEEEecCCchhHHHHHHHHHHCCceeccC-----CCCEEEEeccCcCCHHHHHHHHHHHHHHH
Q psy6548 171 RGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPI-----SNNIIRLSPALNITEQELREGLDIIINTI 234 (242)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~-----~~~~lR~~~~~~~t~e~i~~~~~~l~~~l 234 (242)
++.|.++|+.++. ...+.+.|.++||.+.+. ..+++|+++ .+.++.+++++.|++++
T Consensus 289 ~~~~~~~~i~~~~----~~~~~~~l~~~gV~v~~~~~~~~~~~~iRis~---~~~~~~~~l~~~l~~~~ 350 (351)
T PRK14807 289 PSKTNFILVKFKD----ADYVYQGLLERGILVRDFSKVEGLEGALRITV---SSCEANDYLINGLKELL 350 (351)
T ss_pred cCCccEEEEEcCC----HHHHHHHHHHCCEEEEECCCCCCCCCeEEEEc---CCHHHHHHHHHHHHHhh
Confidence 4457788888764 467899999999999764 247899993 36788899999987753
No 195
>cd06451 AGAT_like Alanine-glyoxylate aminotransferase (AGAT) family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway.
Probab=99.84 E-value=2.9e-19 Score=150.60 Aligned_cols=214 Identities=16% Similarity=0.193 Sum_probs=148.8
Q ss_pred CChhh--hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEE
Q psy6548 10 KQVPA--KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVI 87 (242)
Q Consensus 10 ~d~~~--~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~ 87 (242)
.|+++ +.+.+++++++++.++++++|.+.+ +++|.++|++||+++++|++|. +|.. ......+ ..|+++
T Consensus 111 ~~~~~l~~~i~~~~~~~v~i~~~~~~~G~~~~----~~~i~~~a~~~~~~li~D~~~~-~g~~--~~~~~~~--~~d~~~ 181 (356)
T cd06451 111 VSPEEIAEALEQHDIKAVTLTHNETSTGVLNP----LEGIGALAKKHDALLIVDAVSS-LGGE--PFRMDEW--GVDVAY 181 (356)
T ss_pred CCHHHHHHHHhccCCCEEEEeccCCCcccccC----HHHHHHHHHhcCCEEEEeeehh-ccCc--ccccccc--CccEEE
Confidence 35555 3444458899999999999997765 8899999999999999999985 3221 1222222 346665
Q ss_pred --eeccccCCccchheeEeChhhhhccCC--CCCC-----------------CCCCCCHHHHHHHHHHHHHHHh---ccH
Q psy6548 88 --LGKALSGGLYPISAVLADDEVMGTLVP--GTHG-----------------STYGGNPLACKLAMTALDVILE---ENM 143 (242)
Q Consensus 88 --~sK~~~~g~~~~g~~~~~~~~~~~l~~--~~~~-----------------~~~~~~~~~~~~a~a~l~~~~~---~~~ 143 (242)
.+|+|+++ .++|+++.++++++.+.. ...+ ...+.++..+.++.++++.+.. +.+
T Consensus 182 ~s~~K~l~~p-~g~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~aal~~l~~~~~~~~ 260 (356)
T cd06451 182 TGSQKALGAP-PGLGPIAFSERALERIKKKTKPKGFYFDLLLLLKYWGEGYSYPHTPPVNLLYALREALDLILEEGLENR 260 (356)
T ss_pred ecCchhccCC-CCcceeEECHHHHHHHHhcCCCCceeecHHHHHhhhcccCCCCCCChHHHHHHHHHHHHHHHHhhHHHH
Confidence 56999977 678999999988877653 1111 1112344556666677776654 345
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCCeEee-eceeEEEEecCCchhHHHHHHHHHHC-CceeccC----CCCEEEEeccCc
Q psy6548 144 IENAYKMGEIFRSELRSRLSPDIVPVVRG-KGLLNAIVLDKSILEVYDVCIKMKDA-GLVTKPI----SNNIIRLSPALN 217 (242)
Q Consensus 144 ~~~~~~~~~~l~~~l~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~-gi~~~~~----~~~~lR~~~~~~ 217 (242)
.++.+++++++++.| +.++-........ .+.+.++.++.. .+..++++.|.++ ||.+.++ .++.+|++++..
T Consensus 261 ~~~~~~~~~~l~~~L-~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~L~~~~gI~~~~g~~~~~~~~iRis~~~~ 338 (356)
T cd06451 261 WARHRRLAKALREGL-EALGLKLLAKPELRSPTVTAVLVPEG-VDGDEVVRRLMKRYNIEIAGGLGPTAGKVFRIGHMGE 338 (356)
T ss_pred HHHHHHHHHHHHHHH-HHcCCeeccCcccCCCceEEEECCCC-CCHHHHHHHHHHhCCEEEecccccccCCEEEEecCCC
Confidence 677788888999998 5554222111111 234445665543 4678999999998 9999764 346899999999
Q ss_pred CCHHHHHHHHHHHHHHHH
Q psy6548 218 ITEQELREGLDIIINTIN 235 (242)
Q Consensus 218 ~t~e~i~~~~~~l~~~l~ 235 (242)
+|+||++++++.|+++++
T Consensus 339 ~~~e~v~~~~~~l~~~~~ 356 (356)
T cd06451 339 ATREDVLGVLSALEEALK 356 (356)
T ss_pred CCHHHHHHHHHHHHHHhC
Confidence 999999999999988763
No 196
>cd06454 KBL_like KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life.
Probab=99.84 E-value=2.7e-19 Score=150.21 Aligned_cols=218 Identities=18% Similarity=0.241 Sum_probs=148.4
Q ss_pred cccCCCChhh--hcCCC----CCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEecccc-c-cCccCccc-c
Q psy6548 5 FPVKSKQVPA--KLKSN----PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQT-G-LGRTGKLL-A 75 (242)
Q Consensus 5 ~~~~~~d~~~--~~~~~----~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~-~-~~~~g~~~-~ 75 (242)
..++..|.+. +.+.+ .++++++++++++++|...+ +++|+++|++||+++|+||+|. | ++..+... .
T Consensus 110 ~~~~~~~~~~le~~i~~~~~~~~~~~v~~~~~~~~tG~~~~----~~~i~~~~~~~~~~livD~a~~~g~~~~~~~~~~~ 185 (349)
T cd06454 110 RIFKHNDMEDLEKLLREARRPYGKKLIVTEGVYSMDGDIAP----LPELVDLAKKYGAILFVDEAHSVGVYGPHGRGVEE 185 (349)
T ss_pred EEecCCCHHHHHHHHHHhhccCCCeEEEEeccccCCCCccC----HHHHHHHHHHcCCEEEEEccccccccCCCCCChhh
Confidence 3455556665 33332 46789999999999996655 8999999999999999999995 3 21222111 0
Q ss_pred cccCCCCCCEEE--eeccccCCccchheeEeChhhhhccCCCCCC--CCCCCCHHHHHHHHHHHHHHHh-ccHHHHHHHH
Q psy6548 76 IHYEDVRPDIVI--LGKALSGGLYPISAVLADDEVMGTLVPGTHG--STYGGNPLACKLAMTALDVILE-ENMIENAYKM 150 (242)
Q Consensus 76 ~~~~~~~~~~~~--~sK~~~~g~~~~g~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~~a~a~l~~~~~-~~~~~~~~~~ 150 (242)
........++++ ++|++++ +.|+++.++++++.+.+.... .+.+.++..++++.++++.+.. +...++++++
T Consensus 186 ~~~~~~~~~i~~~s~sK~~~~---~gG~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~ 262 (349)
T cd06454 186 FGGLTDDVDIIMGTLGKAFGA---VGGYIAGSKELIDYLRSYARGFIFSTSLPPAVAAAALAALEVLQGGPERRERLQEN 262 (349)
T ss_pred hccccccCcEEEeechhhhcc---cCCEEECCHHHHHHHHHhchhhhccCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 111112345554 7899983 447888888887766543222 2224566777777888887654 4567888889
Q ss_pred HHHHHHHHHhhcCCCCCCeEeeeceeEEEEecCCchhHHHHHHHHHHCCceeccC-------CCCEEEEeccCcCCHHHH
Q psy6548 151 GEIFRSELRSRLSPDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPI-------SNNIIRLSPALNITEQEL 223 (242)
Q Consensus 151 ~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~-------~~~~lR~~~~~~~t~e~i 223 (242)
++.+++.| +.++.... ....+.+.++..+.. .+.+++.+.|.++||.+.+. +.+.+|++++...+++++
T Consensus 263 ~~~l~~~l-~~~g~~~~--~~~~~~~~~~~~~~~-~~~~~~~~~L~~~gI~~~~~~~~~~~~~~~~iRi~~~~~~~~~~i 338 (349)
T cd06454 263 VRYLRRGL-KELGFPVG--GSPSHIIPPLIGDDP-AKAVAFSDALLERGIYVQAIRYPTVPRGTARLRISLSAAHTKEDI 338 (349)
T ss_pred HHHHHHHH-HhcCCccc--CCCCCcEEEEeCCCh-HHHHHHHHHHHhCCceEEEecCCccCCCCCeEEEEEeCCCCHHHH
Confidence 99999999 66542111 112233344444433 56788999999999999752 246899999998999999
Q ss_pred HHHHHHHHHH
Q psy6548 224 REGLDIIINT 233 (242)
Q Consensus 224 ~~~~~~l~~~ 233 (242)
++++++|+++
T Consensus 339 ~~~~~~l~~~ 348 (349)
T cd06454 339 DRLLEALKEV 348 (349)
T ss_pred HHHHHHHHHh
Confidence 9999999764
No 197
>PRK09105 putative aminotransferase; Provisional
Probab=99.84 E-value=1.5e-19 Score=152.92 Aligned_cols=198 Identities=12% Similarity=0.083 Sum_probs=136.7
Q ss_pred CCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEE---eecccc-C
Q psy6548 19 NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVI---LGKALS-G 94 (242)
Q Consensus 19 ~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~---~sK~~~-~ 94 (242)
..+++++++.+++|++|.+ .+.+.++++++.| ++++++|+||+|.+|+... ......+..+++++ |||.+| +
T Consensus 163 ~~~~~~v~l~nP~NPTG~~-~~~~~l~~l~~~~-~~~~~lIvDEaY~~f~~~~--s~~~~~~~~~~vi~~~SfSK~~g~~ 238 (370)
T PRK09105 163 DPNAGLIYICNPNNPTGTV-TPRADIEWLLANK-PAGSVLLVDEAYIHFSDAP--SVVDLVAQRKDLIVLRTFSKLYGMA 238 (370)
T ss_pred CCCCCEEEEeCCCCCCCcC-cCHHHHHHHHHhC-CCCcEEEEECchHHhccCc--chHHHHhhCCCEEEEecccHhhcCC
Confidence 3467888888889999965 5667788888875 4599999999997664321 11111122345444 899998 8
Q ss_pred CccchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHHHHhhcCCCCCCeEeee
Q psy6548 95 GLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVIL-EENMIENAYKMGEIFRSELRSRLSPDIVPVVRGK 173 (242)
Q Consensus 95 g~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~-~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~ 173 (242)
| +|+||+++++++++.+.+. ..+..+.+++.++.++++... -++..+.++++++.+.+.| +.++.. ..++.
T Consensus 239 G-lRiG~~v~~~~~i~~l~~~---~~~~~~~~~~~aa~~~L~~~~~~~~~~~~~~~~r~~l~~~L-~~~g~~---~~~~~ 310 (370)
T PRK09105 239 G-MRLGLAAARPDLLAKLARF---GHNPLPVPAAAAGLASLRDPKLVPQRRAENAAVREDTIAWL-KKKGYK---CTPSQ 310 (370)
T ss_pred c-cceeeeecCHHHHHHHHhc---CCCCcCHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHH-HHCCCC---cCCCC
Confidence 9 9999999999999888764 233456667666666665311 1334566777788888888 555421 12233
Q ss_pred ceeEEEEecCCchhHHHHHHHHHHCCceeccC---CCCEEEEeccCcCCHHHHHHHHHHHHHHH
Q psy6548 174 GLLNAIVLDKSILEVYDVCIKMKDAGLVTKPI---SNNIIRLSPALNITEQELREGLDIIINTI 234 (242)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~---~~~~lR~~~~~~~t~e~i~~~~~~l~~~l 234 (242)
+.+++++++. +..++++.|.++||.++.. .++++|++ ..++++++++++.|++.+
T Consensus 311 ~~f~~~~~~~---~~~~l~~~L~~~gI~v~~~~~~~~~~~Ris---~~~~~~~~~l~~al~~~~ 368 (370)
T PRK09105 311 ANCFMVDVKR---PAKAVADAMAKQGVFIGRSWPIWPNWVRVT---VGSEEEMAAFRSAFAKVM 368 (370)
T ss_pred CcEEEEeCCC---CHHHHHHHHHHCCcEEecCCCCCCCeEEEE---cCCHHHHHHHHHHHHHHh
Confidence 4455566642 4678999999999999422 36899999 337889999999988765
No 198
>PRK14808 histidinol-phosphate aminotransferase; Provisional
Probab=99.84 E-value=9.6e-20 Score=152.19 Aligned_cols=194 Identities=13% Similarity=0.107 Sum_probs=134.9
Q ss_pred CEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEEeecccc-CCccch
Q psy6548 21 NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALS-GGLYPI 99 (242)
Q Consensus 21 ~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~sK~~~-~g~~~~ 99 (242)
+++++++..++||+|...+ .+.+++| + +|+++||+||+|.+|................-+.+|||+++ +| +|+
T Consensus 138 ~~~~i~i~nP~NPTG~~~s-~~~l~~l---~-~~~~~ii~DE~Y~~f~~~~~~~~~~~~~~vi~~~S~SK~~~l~G-lRv 211 (335)
T PRK14808 138 EGDVVFIPNPNNPTGHVFE-REEIERI---L-KTGAFVALDEAYYEFHGESYVDLLKKYENLAVIRTFSKAFSLAA-QRI 211 (335)
T ss_pred CCCEEEEeCCCCCCCCCcC-HHHHHHH---H-hcCCEEEEECchhhhcCCchHHHHHhCCCEEEEEechhhccCcc-cce
Confidence 4688999999999997664 4555555 4 58999999999988731111001111111111223899999 99 999
Q ss_pred heeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHhhcCCCCCCeEeeeceeEE
Q psy6548 100 SAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILE-ENMIENAYKMGEIFRSELRSRLSPDIVPVVRGKGLLNA 178 (242)
Q Consensus 100 g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~-~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ 178 (242)
||+++++++++.+.... ..++.+.+++.++.++++..+. .+..+.+++.++.+.+.| +.++ . ...++.|.++|
T Consensus 212 G~~v~~~~~~~~l~~~~--~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~r~~l~~~L-~~~g--~-~~~~~~g~f~~ 285 (335)
T PRK14808 212 GYVVSSEKFIDAYNRVR--LPFNVSYVSQMFAKVALDHREIFEERTKFIVEERERMKSAL-REMG--Y-RITDSRGNFVF 285 (335)
T ss_pred EEEEeCHHHHHHHHHhc--CCCCCCHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHH-HHCC--C-EECCCCCeEEE
Confidence 99999999998886533 3456677888777777763321 233455666677777777 5553 2 22234678889
Q ss_pred EEecCCchhHHHHHHHHHHCCceeccCCCCEEEEeccCcCCHHHHHHHHHHHHH
Q psy6548 179 IVLDKSILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIIN 232 (242)
Q Consensus 179 ~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~lR~~~~~~~t~e~i~~~~~~l~~ 232 (242)
+.++.. +..++.++|.++||.++.. .+++|++ ..+.++++++++.|++
T Consensus 286 ~~l~~~--~~~~~~~~l~~~Gi~V~~~-~~~~Ris---i~~~~~~~~~~~~l~~ 333 (335)
T PRK14808 286 IFMEKE--EKERLLEHLRAKNIAVRSF-REGVRIT---IGKREENDMILKELEV 333 (335)
T ss_pred EeCCCc--cHHHHHHHHHHCCeEEEEC-CCCeEEe---cCCHHHHHHHHHHHHh
Confidence 988753 4578999999999999976 5789999 4578999999998864
No 199
>PRK09275 aspartate aminotransferase; Provisional
Probab=99.84 E-value=1.2e-19 Score=157.82 Aligned_cols=214 Identities=14% Similarity=0.146 Sum_probs=136.6
Q ss_pred hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHh--hCCEEEEeccccccCccCcccccccCCCCCCEE---Eee
Q psy6548 15 KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQ--YNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIV---ILG 89 (242)
Q Consensus 15 ~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~--~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~---~~s 89 (242)
+.+.+++++++++.+++||+|. +.+++.+++|+++|++ ++++||+||+|.+|...... ..... ..+++ +||
T Consensus 235 ~~~~~~~tkai~l~nP~NPTG~-v~s~e~l~~I~~ia~~~~~~l~II~DEvY~~f~~~~~s-~~~~~--~~~~I~v~SfS 310 (527)
T PRK09275 235 EKLRDPSIKALFLVNPSNPPSV-AMSDESLEKIADIVNEKRPDLMIITDDVYGTFVDDFRS-LFAVL--PYNTILVYSFS 310 (527)
T ss_pred HhhcCCCCCEEEEeCCcCCcCC-CCCHHHHHHHHHHHHhcCCCcEEEECCCChhhcccccC-HHHhC--CCCEEEEeehh
Confidence 5566778999999899999995 5578899999999965 59999999999877421111 11111 11222 389
Q ss_pred cccc-CCccchheeEeChh-----hhhcc--------------------------------CCCCCCCCCCCCHHHHHH-
Q psy6548 90 KALS-GGLYPISAVLADDE-----VMGTL--------------------------------VPGTHGSTYGGNPLACKL- 130 (242)
Q Consensus 90 K~~~-~g~~~~g~~~~~~~-----~~~~l--------------------------------~~~~~~~~~~~~~~~~~~- 130 (242)
|.|+ +| ||+||++++++ ++..+ ++.....+.+.+.+.|.+
T Consensus 311 K~f~mtG-~RlG~i~~~~~~v~~~~i~~l~~~~~~~~~~ry~~~~~~p~~~~fidrlvad~~~v~~~~t~~~s~p~Q~a~ 389 (527)
T PRK09275 311 KYFGATG-WRLGVIALHEDNVFDKLIAKLPEEKKKELDKRYSSLTTDPEKLKFIDRLVADSRQVALNHTAGLSTPQQVQM 389 (527)
T ss_pred hhccCcH-hHHhhhhcCchhHHHHHHHhccHHHHHHHHhhhhhccCCcchhhhHHHHHHHHHHHHHhhccCCCCHHHHHH
Confidence 9998 89 99999999876 44333 111223344556566554
Q ss_pred H----HHHHHHHHh--ccHHHHHHHHHHHHHHHHHhhcCCCCCCeEeeeceeEEEEecCCc---------------hhHH
Q psy6548 131 A----MTALDVILE--ENMIENAYKMGEIFRSELRSRLSPDIVPVVRGKGLLNAIVLDKSI---------------LEVY 189 (242)
Q Consensus 131 a----~a~l~~~~~--~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~ 189 (242)
+ .++++.... ++..+.++++++.+.+.| +.......+..+++.++++.... .+..
T Consensus 390 al~~~~all~~~~~~~~~~~~~~~~Rr~~l~~~L----g~~~~~~~p~g~fY~~~di~~~~~~~~g~~f~~~l~~~~~~~ 465 (527)
T PRK09275 390 ALFSLFALLDEEDAYKKAMKDIIRRRYKALYEGL----GLPEPEDPNNAAYYTLIDLEEWAEKNYGKEFADYLKKNYSPV 465 (527)
T ss_pred HHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHc----CCCCcCCCCCeeEEEEEEhHHhhhhccCchhhhhhhccCCHH
Confidence 2 122321110 122334444444443333 32222224566788888876410 1456
Q ss_pred HHHHHHHH-CCceeccC-----CCCEEEEeccCc-CCHHHHHHHHHHHHHHHHHHhh
Q psy6548 190 DVCIKMKD-AGLVTKPI-----SNNIIRLSPALN-ITEQELREGLDIIINTINTMAA 239 (242)
Q Consensus 190 ~~~~~l~~-~gi~~~~~-----~~~~lR~~~~~~-~t~e~i~~~~~~l~~~l~~~~~ 239 (242)
+++.+|.+ .||++.|+ .++++|++ +. .+++++.++.++|.+.+.+..+
T Consensus 466 ~f~~~Ll~e~gV~v~PG~~Fg~~~~~vRis--~a~~~~~~~~~~~~rl~~~l~~y~~ 520 (527)
T PRK09275 466 DLLFRLAEETGVVLLPGGGFGGPEWSVRVS--LANLNEEDYAKIGKAIRKLLDEYYE 520 (527)
T ss_pred HHHHHHHhcCCEEEeCchhhCCCCCeEEEE--EecCCHHHHHHHHHHHHHHHHHHHH
Confidence 77888875 59999886 24789999 44 4788999999999999987643
No 200
>cd00613 GDC-P Glycine cleavage system P-protein, alpha- and beta-subunits. This family consists of Glycine cleavage system P-proteins EC:1.4.4.2 from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex EC:2.1.2.10 (GDC) also annotated as glycine cleavage system or glycine synthase. GDC consists of four proteins P, H, L and T. The reaction catalysed by this protein is: Glycine + lipoylprotein <= S-aminomethyldihydrolipoylprotein + CO2. Alpha-beta-type dimers associate to form an alpha(2)beta(2) tetramer, where the alpha- and beta-subunits are structurally similar and appear to have arisen by gene duplication and subsequent divergence with a loss of one active site. The members of this CD are widely dispersed among all three forms of cellular life.
Probab=99.84 E-value=2.7e-19 Score=152.95 Aligned_cols=215 Identities=17% Similarity=0.146 Sum_probs=143.0
Q ss_pred ccccCCC-----Chhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccc
Q psy6548 4 QFPVKSK-----QVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIH 77 (242)
Q Consensus 4 ~~~~~~~-----d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~ 77 (242)
+..+|++ |+++ +...++++++|++++++ ++|.+. +++++|+++|++||+++|+|++|....... ...
T Consensus 136 ~~~v~~~~~~~~d~~~l~~~i~~~t~~viv~~~~-~~G~~~---~~l~~i~~la~~~g~~livD~~~~~~~~~~---~~~ 208 (398)
T cd00613 136 VVEVPSDEGGTVDLEALKEEVSEEVAALMVQYPN-TLGVFE---DLIKEIADIAHSAGALVYVDGDNLNLTGLK---PPG 208 (398)
T ss_pred EEEeccCCCCCcCHHHHHHhcCCCeEEEEEECCC-CCceec---chHHHHHHHHHhcCCEEEEEeccccccCCC---ChH
Confidence 3445554 3455 44446689999999975 677663 468999999999999999999885221111 111
Q ss_pred cCCCCCCEEE--eecccc----CCccchheeEeChhhhhccCCCC-----------------------------CCCCCC
Q psy6548 78 YEDVRPDIVI--LGKALS----GGLYPISAVLADDEVMGTLVPGT-----------------------------HGSTYG 122 (242)
Q Consensus 78 ~~~~~~~~~~--~sK~~~----~g~~~~g~~~~~~~~~~~l~~~~-----------------------------~~~~~~ 122 (242)
. ..+|+++ ++|+++ || +++|+++.++++++.+.+.. ...+++
T Consensus 209 ~--~~~d~~~~s~~K~~~p~g~Gg-p~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~e~~~~~~~~ 285 (398)
T cd00613 209 E--YGADIVVGNLQKTGVPHGGGG-PGAGFFAVKKELVRFLPGRLVGVTKDAEGNRAFRLALQTREQHIRREKATSNICT 285 (398)
T ss_pred H--cCCCEEEeeccccCCCCCCCC-CceeEEEEhhhhHhhCCCCeeccccccCCCcceEEecccchhhccccccccccee
Confidence 1 2467776 668873 46 88999999988877653210 011233
Q ss_pred CCHHHHHHHHHHHHHHHhc---cHHHHHHHHHHHHHHHHHhhcCCCCCCeEeeeceeEEEEecCC-chhHHHHHHHHHHC
Q psy6548 123 GNPLACKLAMTALDVILEE---NMIENAYKMGEIFRSELRSRLSPDIVPVVRGKGLLNAIVLDKS-ILEVYDVCIKMKDA 198 (242)
Q Consensus 123 ~~~~~~~~a~a~l~~~~~~---~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~ 198 (242)
.+++...++.++++.+..+ ++.++.+++++++++.| ++++..... .......+++.++.. +.+..+++++|.++
T Consensus 286 ~~~~~~~~a~~~l~~~~~~g~~~~~~~~~~~~~~l~~~L-~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~~~L~~~ 363 (398)
T cd00613 286 GQALLALMAAMYIVYLGPEGLKEIAERAHLNANYLAKRL-KEVGGVLPF-NGPFFHEFVLRLPPLYGIRAEDLAKALIDG 363 (398)
T ss_pred cHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHH-HhcCCcccC-CCCeeEEEEEEcCCcchHHHHHHHHhhhhc
Confidence 3445555555555555432 35688889999999999 666532111 111223345666541 14678899999999
Q ss_pred CceeccC---CCCEEEEeccCcCCHHHHHHHHHHH
Q psy6548 199 GLVTKPI---SNNIIRLSPALNITEQELREGLDII 230 (242)
Q Consensus 199 gi~~~~~---~~~~lR~~~~~~~t~e~i~~~~~~l 230 (242)
||.+... +.+.+|++|+.++|+||+|++++.|
T Consensus 364 gi~~~~~~~~~~~~lRis~~~~~t~edid~~~~~L 398 (398)
T cd00613 364 GFHAPTMYLPVDGTLMIEPTETETKEELDALLEAL 398 (398)
T ss_pred CccccccccCCCCeEEEEcCCCCCHHHHHHHHHhC
Confidence 9988653 5689999999999999999998764
No 201
>PLN02607 1-aminocyclopropane-1-carboxylate synthase
Probab=99.84 E-value=3.8e-19 Score=153.50 Aligned_cols=211 Identities=17% Similarity=0.172 Sum_probs=138.1
Q ss_pred CCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCccc-cc----ccCC---CCCCEE---Ee
Q psy6548 20 PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLL-AI----HYED---VRPDIV---IL 88 (242)
Q Consensus 20 ~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~-~~----~~~~---~~~~~~---~~ 88 (242)
.+++++++.+++||+|. +.+++.+++|.++|++||+.+|+||+|.++...+..+ +. ...+ ....+. ++
T Consensus 199 ~~vk~lll~nP~NPtG~-~~s~e~l~~l~~~~~~~~i~lI~DEiYa~~~f~~~~f~S~~s~~~~~~~~~~~~~v~vi~s~ 277 (447)
T PLN02607 199 IRVRGVLITNPSNPLGA-TVQRSVLEDILDFVVRKNIHLVSDEIYSGSVFSASEFVSVAEIVEARGYKGVAERVHIVYSL 277 (447)
T ss_pred CCeeEEEEeCCCCCcCc-ccCHHHHHHHHHHHHHCCCEEEEeccccccccCCCCcccHHHHHhhcCCCCCcCcEEEEEcc
Confidence 57899999999999995 5567899999999999999999999998742222111 11 1111 112233 28
Q ss_pred ecccc-CCccchheeEe-ChhhhhccCCCCCCCCC-CCCHHHHHHHHHHHHHHH--h---ccHHHHHHHHHHHHHHHHHh
Q psy6548 89 GKALS-GGLYPISAVLA-DDEVMGTLVPGTHGSTY-GGNPLACKLAMTALDVIL--E---ENMIENAYKMGEIFRSELRS 160 (242)
Q Consensus 89 sK~~~-~g~~~~g~~~~-~~~~~~~l~~~~~~~~~-~~~~~~~~~a~a~l~~~~--~---~~~~~~~~~~~~~l~~~l~~ 160 (242)
||.|| +| +|+||+++ +++++..+... ..+ ..+.+++.++.+.++... + ....+++++.++.+.+.| +
T Consensus 278 SK~fg~~G-lRvG~ivs~n~~l~~~~~~~---~~~~~~s~~~q~~~~~~L~d~~~~~~~l~~~r~~l~~~~~~~~~~L-~ 352 (447)
T PLN02607 278 SKDLGLPG-FRVGTIYSYNDKVVTTARRM---SSFTLVSSQTQHLLASMLSDEEFTENYIRTNRERLRKRYEMIVQGL-R 352 (447)
T ss_pred hhcCCCCc-ceEEEEEEcCHHHHHHHHHH---hhcCCCCHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHH-H
Confidence 99999 99 99999997 56666655532 122 345566655544443210 0 112344455555666666 4
Q ss_pred hcCCCCCCeEeeeceeEEEEecCCc-----hhHHHHHHHHHH-CCceeccC------CCCEEEEeccCcCCHHHHHHHHH
Q psy6548 161 RLSPDIVPVVRGKGLLNAIVLDKSI-----LEVYDVCIKMKD-AGLVTKPI------SNNIIRLSPALNITEQELREGLD 228 (242)
Q Consensus 161 ~l~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~l~~-~gi~~~~~------~~~~lR~~~~~~~t~e~i~~~~~ 228 (242)
..+ +....+..|+++|++++..- ....++.+++.+ .||.+.|+ .++++|+++.. .++++++++++
T Consensus 353 ~~g--i~~~~~~ag~fvw~~L~~~~~~~~~~~e~~l~~~ll~~~gV~v~pG~~f~~~~~g~fRi~fa~-~~~~~l~~gl~ 429 (447)
T PLN02607 353 RAG--IECLKGNAGLFCWMNLSPLLETPTREGELALWDSILREVKLNISPGSSCHCSEPGWFRVCFAN-MSEDTLEVALK 429 (447)
T ss_pred hCC--CCcccCCeeEEEEEEchHhhcCCCchhHHHHHHHHHHhCCEEEcCccccCCCCCCEEEEEecc-CCHHHHHHHHH
Confidence 433 22233456899999986420 123467777765 69999886 26899999443 37899999999
Q ss_pred HHHHHHHHHhh
Q psy6548 229 IIINTINTMAA 239 (242)
Q Consensus 229 ~l~~~l~~~~~ 239 (242)
+|.+++++-.+
T Consensus 430 Ri~~~l~~~~~ 440 (447)
T PLN02607 430 RIHRFMDRRKT 440 (447)
T ss_pred HHHHHHHHHHh
Confidence 99999986543
No 202
>PTZ00376 aspartate aminotransferase; Provisional
Probab=99.83 E-value=9.2e-20 Score=156.07 Aligned_cols=203 Identities=14% Similarity=0.162 Sum_probs=135.2
Q ss_pred CCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccC---cccccccC-CCCCCEE---Eeeccc
Q psy6548 20 PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTG---KLLAIHYE-DVRPDIV---ILGKAL 92 (242)
Q Consensus 20 ~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g---~~~~~~~~-~~~~~~~---~~sK~~ 92 (242)
++++++++.++|||+|. +.+++.+++|+++|++||++||+||+|.+|...+ .......+ ....+++ +|||.+
T Consensus 175 ~~~~~~~~~~p~NPTG~-~~s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~~vi~i~SfSK~~ 253 (404)
T PTZ00376 175 NGSVVLLHACAHNPTGV-DPTEEQWKEIADVMKRKNLIPFFDMAYQGFASGDLDKDAYAIRLFAERGVEFLVAQSFSKNM 253 (404)
T ss_pred CCCEEEEeCCCCCCCCC-CCCHHHHHHHHHHHHhCCcEEEEehhhcCccCCCHHHHHHHHHHHHhcCCcEEEEEeCCCcc
Confidence 45678888999999994 5578899999999999999999999998874432 10011111 1112333 399999
Q ss_pred c-CCccchhee---EeChhhhhccCCC---CCCCCC-CCCHHHHHHHHHHHHHHH--------hccHHHHHHHHHHHHHH
Q psy6548 93 S-GGLYPISAV---LADDEVMGTLVPG---THGSTY-GGNPLACKLAMTALDVIL--------EENMIENAYKMGEIFRS 156 (242)
Q Consensus 93 ~-~g~~~~g~~---~~~~~~~~~l~~~---~~~~~~-~~~~~~~~~a~a~l~~~~--------~~~~~~~~~~~~~~l~~ 156 (242)
+ +| +|+||+ .+++++++.+... ....++ +.+++++.++.++++... .++..+.++++++.+.+
T Consensus 254 ~~~G-lRvG~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~l~~ 332 (404)
T PTZ00376 254 GLYG-ERIGALHIVCANKEEAANVLSQLKLIIRPMYSSPPIHGARIADRILSDPELRAEWLSELKEMSGRIQNMRQLLYD 332 (404)
T ss_pred cccc-cccceEEEEeCCHHHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9 99 999998 4677655443211 012233 345677777766665321 01234566778888888
Q ss_pred HHHhhcCCC--CCCeEeeeceeEEEEecCCchhHHHHHHHHHHC-CceeccCCCCEEEEeccCcCCHHHHHHHHHHHHHH
Q psy6548 157 ELRSRLSPD--IVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDA-GLVTKPISNNIIRLSPALNITEQELREGLDIIINT 233 (242)
Q Consensus 157 ~l~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-gi~~~~~~~~~lR~~~~~~~t~e~i~~~~~~l~~~ 233 (242)
.| +..+.. +....+..|+++|+.++ .+++++|.++ ||.+.|++ |++.+. .+.+++++++++|+++
T Consensus 333 ~L-~~~~~~~~~~~~~p~gg~f~~~~~~------~~~~~~L~~~~~v~v~p~~----Ris~~~-~~~~~~~~~~~~l~~~ 400 (404)
T PTZ00376 333 EL-KALGSPGDWEHIINQIGMFSFTGLT------KEQVERLIEKYHIYLLDNG----RISVAG-LTSKNVDYVAEAIHDV 400 (404)
T ss_pred HH-HhcCCCCcccccccCceEEEecCCC------HHHHHHHHHhCCEeecCCC----eEEEec-cCHHhHHHHHHHHHHH
Confidence 88 554311 11123456788888653 3678888877 99998873 998533 6899999999999988
Q ss_pred HHH
Q psy6548 234 INT 236 (242)
Q Consensus 234 l~~ 236 (242)
+..
T Consensus 401 ~~~ 403 (404)
T PTZ00376 401 VRN 403 (404)
T ss_pred Hhc
Confidence 653
No 203
>TIGR03801 asp_4_decarbox aspartate 4-decarboxylase. This enzyme, aspartate 4-decarboxylase (EC 4.1.1.12), removes the side-chain carboxylate from L-aspartate, converting it to L-alanine plus carbon dioxide. It is a PLP-dependent enzyme, homologous to aspartate aminotransferase (EC 2.6.1.1).
Probab=99.83 E-value=2.2e-19 Score=156.01 Aligned_cols=219 Identities=13% Similarity=0.132 Sum_probs=133.5
Q ss_pred hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhh--CCEEEEeccccccCccCcccccccCCCCCCEE---Eee
Q psy6548 15 KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQY--NVLFIADEVQTGLGRTGKLLAIHYEDVRPDIV---ILG 89 (242)
Q Consensus 15 ~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~--~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~---~~s 89 (242)
+.+.+++++++++.+++||+|. +.+++.+++|+++|++| +++||+||+|..|...... ..... ..+++ +||
T Consensus 234 ~~~~~~~~kai~l~nP~NPTG~-vls~e~l~~I~~ia~~~~~~l~II~DEvY~~f~~~~~s-l~~~~--~~~vI~v~SfS 309 (521)
T TIGR03801 234 EKLRDPSIKALFVVNPSNPPSV-AMSDESIEKIVDIVANDRPDLMILTDDVYGTFVDDFRS-LFAEL--PYNTIGVYSFS 309 (521)
T ss_pred HHhcCCCCcEEEEeCCCCCCCC-CCCHHHHHHHHHHHHhcCCCeEEEECCCchhhcccccc-hhhhC--CCCEEEEEcch
Confidence 5556778999998888999995 55678899999999987 9999999999876431111 11111 11322 399
Q ss_pred cccc-CCccchheeEeChh-----hhh--------ccCC------------------------CCCCCCCCCCHHHHH--
Q psy6548 90 KALS-GGLYPISAVLADDE-----VMG--------TLVP------------------------GTHGSTYGGNPLACK-- 129 (242)
Q Consensus 90 K~~~-~g~~~~g~~~~~~~-----~~~--------~l~~------------------------~~~~~~~~~~~~~~~-- 129 (242)
|.|+ +| ||+||++++++ ++. .+.. .....+.+.+.+.+.
T Consensus 310 K~fg~~G-~RlG~i~~~~~~v~d~li~~lp~~~~~~l~~ry~~~~~~p~~~~fidr~vadsr~v~~~~~~g~s~p~Q~q~ 388 (521)
T TIGR03801 310 KYFGATG-WRLGTIALHKDNIFDKLIAELPEEKKKELDKRYSSLTTEPRKLKFIDRLVADSRQVALNHTAGLSTPQQVQM 388 (521)
T ss_pred hhccCch-hhhhhhhcCchHHHHHHHHhccHHHHHHHhhhhccccCChhhhhhHHHHHHHHHHHHHhccCCCCcHHHHHH
Confidence 9998 89 99999998754 221 1111 111223344444443
Q ss_pred HHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHhhcCCCCCCeEeeeceeEEEEecCCc---------------hhHHHHHH
Q psy6548 130 LAMTALDVILE-ENMIENAYKMGEIFRSELRSRLSPDIVPVVRGKGLLNAIVLDKSI---------------LEVYDVCI 193 (242)
Q Consensus 130 ~a~a~l~~~~~-~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~ 193 (242)
+..++...+.. +.+.+..++..+.-++.+.+.++-......+..++++++++.... .+..+++.
T Consensus 389 al~a~~all~~~~~y~~~~~~~~~~R~~~l~~~Lg~~~~~~~~~g~~Y~~~di~~~~~~~~~~~f~~~l~~~~~~~~~~~ 468 (521)
T TIGR03801 389 ALFSLFALMDKENAYKAETKDICRRREKLLFRGLGLPLQEDPNDVAYYTLIDLEEWAEKNYGEEFSSYLKKNYSPVDVLF 468 (521)
T ss_pred HHHHHHHHhccchhHHHHHHHHHHHHHHHHHHhcCCCCcCCCCCeEEEEEeehHHHHHHhcchHHHHHHhccCCHHHHHH
Confidence 21112222222 223333332222222333233332121223556789999887421 13567777
Q ss_pred HHHH-CCceeccC-----CCCEEEEeccCcCCHHHHHHHHHHHHHHHHHHhh
Q psy6548 194 KMKD-AGLVTKPI-----SNNIIRLSPALNITEQELREGLDIIINTINTMAA 239 (242)
Q Consensus 194 ~l~~-~gi~~~~~-----~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~~~ 239 (242)
+|.+ .||++.|+ .++++|+++. ..++++++++.++|++.+++...
T Consensus 469 ~L~~e~gV~v~PG~~Fg~~~~~vRisla-~l~~~~~~~~~~rl~~~~~~~~~ 519 (521)
T TIGR03801 469 RLAEETGIVLLPGGGFGGPEWSVRVSLA-NLNEYDYAEIGRAIRKILDEYYE 519 (521)
T ss_pred HHHHhCCEEEeCchhcCCCCCeEEEEec-CCCHHHHHHHHHHHHHHHHHHHH
Confidence 7775 59999886 2468999942 25888999999999999877643
No 204
>PRK06836 aspartate aminotransferase; Provisional
Probab=99.83 E-value=5e-19 Score=151.08 Aligned_cols=214 Identities=16% Similarity=0.173 Sum_probs=144.8
Q ss_pred hhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHh------hCCEEEEeccccccCccCcccccccCCCCCC
Q psy6548 12 VPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQ------YNVLFIADEVQTGLGRTGKLLAIHYEDVRPD 84 (242)
Q Consensus 12 ~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~------~~~~li~De~~~~~~~~g~~~~~~~~~~~~~ 84 (242)
+++ +...+++++++++.+++|++|.++ +.+.+++|+++|++ ||+++|+||+|.++...+.... .......+
T Consensus 158 ~~~l~~~~~~~~~~v~~~~p~NPtG~~~-~~~~~~~l~~la~~~~~~~~~~~~ii~De~y~~~~~~~~~~~-~~~~~~~~ 235 (394)
T PRK06836 158 LDALEAAITPKTKAVIINSPNNPTGVVY-SEETLKALAALLEEKSKEYGRPIYLISDEPYREIVYDGAEVP-YIFKYYDN 235 (394)
T ss_pred HHHHHhhcCcCceEEEEeCCCCCCCcCC-CHHHHHHHHHHHHHhhhccCCCeEEEEeccccccccCCCCCC-ChHHccCc
Confidence 444 333355788999988999999544 56789999999999 8999999999987643332111 00111123
Q ss_pred EEE---eecccc-CCccchheeEeChhhhhc---cCCC---CC-CCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Q psy6548 85 IVI---LGKALS-GGLYPISAVLADDEVMGT---LVPG---TH-GSTYGGNPLACKLAMTALDVILEENMIENAYKMGEI 153 (242)
Q Consensus 85 ~~~---~sK~~~-~g~~~~g~~~~~~~~~~~---l~~~---~~-~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~ 153 (242)
+++ +||.|+ +| +|+||+++++++.+. +... .. ...+..+++.+.++...++ +....+.++++++.
T Consensus 236 ~i~~~S~SK~~~~pG-lRiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~---~~~~~~~~~~~r~~ 311 (394)
T PRK06836 236 SIVVYSFSKSLSLPG-ERIGYIAVNPEMEDADDLVAALVFANRILGFVNAPALMQRVVAKCLD---ATVDVSIYKRNRDL 311 (394)
T ss_pred EEEEecchhhccCcc-eeeEEEecCHHHhhhHHHHHHHHHHhhccccccCCHHHHHHHHHHhC---ChHHHHHHHHHHHH
Confidence 333 899999 89 999999998765331 1110 01 1113455566655544443 22234566777788
Q ss_pred HHHHHHhhcCCCCCCeEeeeceeEEEEecCCchhHHHHHHHHHHCCceeccCC----CCEEEEeccCcCCHHHHHHHHHH
Q psy6548 154 FRSELRSRLSPDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPIS----NNIIRLSPALNITEQELREGLDI 229 (242)
Q Consensus 154 l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~----~~~lR~~~~~~~t~e~i~~~~~~ 229 (242)
+.+.| +..+ .....+..|+++|+.++.. +..++++.|.++||.+.|+. .+++|+++. .+++++++++++
T Consensus 312 l~~~L-~~~g--~~~~~~~gg~~~~~~~~~~--~~~~~~~~l~~~gv~v~~g~~f~~~~~iRi~~~--~~~~~~~~~i~~ 384 (394)
T PRK06836 312 LYDGL-TELG--FECVKPQGAFYLFPKSPEE--DDVAFCEKAKKHNLLLVPGSGFGCPGYFRLSYC--VDTETIERSLPA 384 (394)
T ss_pred HHHHH-HhCC--CEeecCCceEEEEEeCCCC--CHHHHHHHHHhCCEEEECchhcCCCCeEEEEec--CCHHHHHHHHHH
Confidence 88888 5543 2222344578889887763 56788899999999999872 578999965 589999999999
Q ss_pred HHHHHHHHh
Q psy6548 230 IINTINTMA 238 (242)
Q Consensus 230 l~~~l~~~~ 238 (242)
|++++++.+
T Consensus 385 l~~~l~~~~ 393 (394)
T PRK06836 385 FEKLAKEYK 393 (394)
T ss_pred HHHHHHHhc
Confidence 999987653
No 205
>TIGR03301 PhnW-AepZ 2-aminoethylphosphonate aminotransferase. This family includes a number of 2-aminoethylphosphonate aminotransferases, some of which are indicated to operate in the catabolism of 2-aminoethylphosphonate (AEP) and others which are involved in the biosynthesis of the same compound. The catabolic enzyme (PhnW, ) is known to use pyruvate:alanine as the transfer partner and is modeled by the equivalog-level alignment (TIGR02326). The PhnW family is apparently a branch of a larger tree including genes (AepZ) adjacent to others responsible for the biosynthesis of phosphonoacetaldehyde. The identity of the transfer partner is unknown for these enzymes and considering the reversed flux compared to PhnW, it may very well be different.
Probab=99.83 E-value=7.8e-19 Score=147.74 Aligned_cols=212 Identities=16% Similarity=0.212 Sum_probs=147.2
Q ss_pred Chhh--hcCC-CCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEE
Q psy6548 11 QVPA--KLKS-NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVI 87 (242)
Q Consensus 11 d~~~--~~~~-~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~ 87 (242)
|+++ +.+. +.+++.+++..+++++|...+ +++|.++|++||+++|+|++|+ ++. .++.+..++ .|+++
T Consensus 112 d~~~l~~~l~~~~~~~~v~~~~~~~~~G~~~~----~~~i~~l~~~~~~~livD~~~s-~g~--~~~~~~~~~--~d~~~ 182 (355)
T TIGR03301 112 DLNRIEEALAADPDITHVATVHHETTTGILNP----LEAIAKVARSHGAVLIVDAMSS-FGA--IPIDIEELD--VDALI 182 (355)
T ss_pred CHHHHHHHHHhCCCceEEEEEecCCcccchhH----HHHHHHHHHHcCCEEEEEeccc-cCC--cccchhhcC--ccEEE
Confidence 4555 3333 346677777777788887665 8999999999999999999876 332 223333333 45554
Q ss_pred --eeccccCCccchheeEeChhhhhccCCCCC-----------------CCCCCCCHHHHHHHHHHHHHHHhc----cHH
Q psy6548 88 --LGKALSGGLYPISAVLADDEVMGTLVPGTH-----------------GSTYGGNPLACKLAMTALDVILEE----NMI 144 (242)
Q Consensus 88 --~sK~~~~g~~~~g~~~~~~~~~~~l~~~~~-----------------~~~~~~~~~~~~~a~a~l~~~~~~----~~~ 144 (242)
++|+++|+ .++|++++++++++.+..... ...++.+...+.++.++++.+.++ +..
T Consensus 183 ~s~~K~l~~~-~G~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~ 261 (355)
T TIGR03301 183 ASANKCLEGV-PGFGFVIARRDLLEASAGNARSLYLDLYDQWAYMEKTGKWRFTPPTHTVYAFAQALEELEAEGGVPARI 261 (355)
T ss_pred ecCCcccccC-CceeEEEECHHHHHHhhCCCCCceeeHHHHHHHhhhcCCCCCCCcHHHHHHHHHHHHHHHHcccHHHHH
Confidence 77999866 668999999998877652110 123345666777777777766443 345
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCCe-EeeeceeEEEEecCCc-hhHHHHHHHHHHCCceeccCC---CCEEEEeccCcCC
Q psy6548 145 ENAYKMGEIFRSELRSRLSPDIVPV-VRGKGLLNAIVLDKSI-LEVYDVCIKMKDAGLVTKPIS---NNIIRLSPALNIT 219 (242)
Q Consensus 145 ~~~~~~~~~l~~~l~~~l~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~gi~~~~~~---~~~lR~~~~~~~t 219 (242)
++++++++++++.| ++++...... ....+.++++.++... .+..++.++|.++||.+.++. .+++|++++..++
T Consensus 262 ~~~~~~~~~~~~~L-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~i~~~~~~~~~~iRis~~~~~~ 340 (355)
T TIGR03301 262 ARYRRNRELLVDGL-RALGFQPLLPERWQSPIIVSFLYPDDPDFDFDDFYQELKERGFVIYPGKLTLADTFRIGTIGEID 340 (355)
T ss_pred HHHHHHHHHHHHHH-HHcCCeeecCCCCCCCcEEEEECCCCCcchHHHHHHHHHHCCEEEECCccccccEEEEecCCCCC
Confidence 67788889999999 6665221111 1234456777776521 355789999999999998863 3789999988889
Q ss_pred HHHHHHHHHHHHHH
Q psy6548 220 EQELREGLDIIINT 233 (242)
Q Consensus 220 ~e~i~~~~~~l~~~ 233 (242)
+++++++++.|+++
T Consensus 341 ~~~i~~~~~~l~~~ 354 (355)
T TIGR03301 341 AADIERLLEAIKDA 354 (355)
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999999875
No 206
>PRK05387 histidinol-phosphate aminotransferase; Provisional
Probab=99.83 E-value=2.3e-19 Score=151.09 Aligned_cols=199 Identities=16% Similarity=0.257 Sum_probs=136.9
Q ss_pred CEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCE-EE--eecccc-CCc
Q psy6548 21 NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDI-VI--LGKALS-GGL 96 (242)
Q Consensus 21 ~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~-~~--~sK~~~-~g~ 96 (242)
.++++++..++|++|.+.+ .+.+++|++.++ ++++|+||+|.+|+.... .. .....+++ ++ |||.++ +|
T Consensus 144 ~~~~v~~~~P~NPtG~~~~-~~~~~~l~~~~~--~~~livDe~y~~~~~~~~-~~--~~~~~~~~i~~~S~SK~~~~~G- 216 (353)
T PRK05387 144 PNGGIIFPNPNAPTGIALP-LAEIERILAANP--DSVVVIDEAYVDFGGESA-IP--LIDRYPNLLVVQTFSKSRSLAG- 216 (353)
T ss_pred cCCEEEEeCCCCCCCCCCC-HHHHHHHHHhCC--CcEEEEeCcccccCCcch-HH--HHhhCCCEEEEEehhHhhcchh-
Confidence 3466777778999997665 455666655432 999999999987642211 11 11112222 22 899999 89
Q ss_pred cchheeEeChhhhhccCCCCCC-CCCCCCHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHHHHhhcCCCCCCeEeeec
Q psy6548 97 YPISAVLADDEVMGTLVPGTHG-STYGGNPLACKLAMTALDVIL-EENMIENAYKMGEIFRSELRSRLSPDIVPVVRGKG 174 (242)
Q Consensus 97 ~~~g~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~a~a~l~~~~-~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~ 174 (242)
+|+||+++++++++.+...... .+++.+.+++.++.++++... -++..++++++++.+.+.| +.++ +. ..+..+
T Consensus 217 lR~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L-~~~g--~~-~~~~~~ 292 (353)
T PRK05387 217 LRVGFAIGHPELIEALNRVKNSFNSYPLDRLAQAGAIAAIEDEAYFEETRAKVIATRERLVEEL-EALG--FE-VLPSKA 292 (353)
T ss_pred hhceeeecCHHHHHHHHHhhccCCCCCcCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHH-HHCC--Ce-ECCCcC
Confidence 9999999999988887654322 245667788877776665221 1345666777888888888 6554 21 123456
Q ss_pred eeEEEEecCCchhHHHHHHHHHHCCceeccC----CCCEEEEeccCcCCHHHHHHHHHHHHHHHH
Q psy6548 175 LLNAIVLDKSILEVYDVCIKMKDAGLVTKPI----SNNIIRLSPALNITEQELREGLDIIINTIN 235 (242)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~----~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~ 235 (242)
+++|+.++. .+..++.++|.++||.+.+. ..+++|++++ ++++++++++.|+++++
T Consensus 293 ~~~~~~~~~--~~~~~~~~~l~~~gi~v~~~~~~~~~~~iRis~~---~~~~~~~~~~~L~~~~~ 352 (353)
T PRK05387 293 NFVFARHPS--HDAAELAAKLRERGIIVRHFNKPRIDQFLRITIG---TDEEMEALVDALKEILA 352 (353)
T ss_pred cEEEEECCC--CCHHHHHHHHHHCCEEEEECCCCCCCCeEEEEeC---CHHHHHHHHHHHHHHhh
Confidence 788888764 46788999999999999654 2468999943 77999999999988764
No 207
>PRK04870 histidinol-phosphate aminotransferase; Provisional
Probab=99.83 E-value=1.6e-19 Score=152.22 Aligned_cols=198 Identities=15% Similarity=0.167 Sum_probs=138.3
Q ss_pred hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEE---eecc
Q psy6548 15 KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVI---LGKA 91 (242)
Q Consensus 15 ~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~---~sK~ 91 (242)
+.+.+++++++++.+++|++|.+. +.+.+++++++| ++++|+||+|.+|........... ..++++ |||
T Consensus 147 ~~~~~~~~~~v~l~~p~NPtG~~~-~~~~~~~i~~~~---~~~ii~De~y~~~~~~~~~~~~~~---~~~vi~~~S~SK- 218 (356)
T PRK04870 147 AAIAEHRPALVFLAYPNNPTGNLF-DDADVERIIEAA---PGLVVVDEAYQPFAGDSWLPRLAR---FPNLLVMRTVSK- 218 (356)
T ss_pred HHhhcCCCCEEEEcCCCCCCCCCC-CHHHHHHHHHHC---CCEEEEECCchhhcCcchHHHHhh---CCCEEEEecchh-
Confidence 444456889999888899999655 567788888877 789999999987743211001111 123333 899
Q ss_pred cc-CCccchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHhhcCCCCCCe
Q psy6548 92 LS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILE-ENMIENAYKMGEIFRSELRSRLSPDIVPV 169 (242)
Q Consensus 92 ~~-~g~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~-~~~~~~~~~~~~~l~~~l~~~l~~~~~~~ 169 (242)
++ +| +|+||+++++++++.+.... ..++.+.+++.++..+++.... ++..+.++++++.+.+.| +.++. + ..
T Consensus 219 ~~~~G-lRiG~~i~~~~~i~~~~~~~--~~~~~~~~~q~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~L-~~~~~-~-~~ 292 (356)
T PRK04870 219 LGLAG-LRLGYLAGHPAWIAELDKVR--PPYNVNVLTQATALFALEHVDVLDAQAAQLRAERTRLAAAL-AALPG-V-TV 292 (356)
T ss_pred hhhHH-HhhhhhhCCHHHHHHHHHcc--CCCcCCHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHH-HhCCC-c-EE
Confidence 77 78 99999999999888877533 3345677777776666653221 334566777888888888 66532 2 22
Q ss_pred EeeeceeEEEEecCCchhHHHHHHHHHHCCceeccC------CCCEEEEeccCcCCHHHHHHHHHHHHHH
Q psy6548 170 VRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPI------SNNIIRLSPALNITEQELREGLDIIINT 233 (242)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~------~~~~lR~~~~~~~t~e~i~~~~~~l~~~ 233 (242)
.+..+.++|+.++. ..++.+.|.++||.++++ .++++|+++ .+.++++++++.|+++
T Consensus 293 ~~~~~~~~~~~~~~----~~~~~~~l~~~gI~v~~~~~f~~~~~~~iRis~---~~~~~~~~l~~al~~~ 355 (356)
T PRK04870 293 FPSAANFILVRVPD----AAAVFDGLKTRGVLVKNLSGMHPLLANCLRVTV---GTPEENAQFLAALKAA 355 (356)
T ss_pred CCCCCeEEEEECCC----HHHHHHHHHHCCEEEEECCCCCCCCCCeEEEeC---CCHHHHHHHHHHHHHh
Confidence 34456788888762 467889999999999865 256899993 3789999999999875
No 208
>PRK08637 hypothetical protein; Provisional
Probab=99.82 E-value=4.6e-19 Score=151.01 Aligned_cols=209 Identities=13% Similarity=0.145 Sum_probs=139.8
Q ss_pred CCEEEEEEcccccCCCcccCCHHHHHHHHHHHHh-----hCCEEEEeccccccCccCccc-c-c-ccCCCCCCE--E---
Q psy6548 20 PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQ-----YNVLFIADEVQTGLGRTGKLL-A-I-HYEDVRPDI--V--- 86 (242)
Q Consensus 20 ~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~-----~~~~li~De~~~~~~~~g~~~-~-~-~~~~~~~~~--~--- 86 (242)
+...++++.+++||+| .+.+.+.+++|+++|++ |+++||+||+|.+|...+... . + ...+...++ +
T Consensus 145 ~~~~~~~~~~P~NPTG-~~~s~~~~~~l~~~~~~~~~~~~~~~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~vi~i~~~ 223 (388)
T PRK08637 145 KGKVIVILNFPNNPTG-YTPTEKEATAIVEAIKELADAGTKVVAVVDDAYFGLFYEDSYKESLFAALANLHSNILAVKLD 223 (388)
T ss_pred CCCEEEEEeCCCCCCC-CCCCHHHHHHHHHHHHHHHhcCCcEEEEecccchhcccCCccchhhHHHhhcccccceEEEec
Confidence 4556677777899999 56678889999999875 999999999998874443211 1 1 111222232 2
Q ss_pred Eeecccc-CCccchheeEeC------hhhhhccCCC----CCCCCCCCCHHHHHHHHHHHHHHHhccHHHH-------HH
Q psy6548 87 ILGKALS-GGLYPISAVLAD------DEVMGTLVPG----THGSTYGGNPLACKLAMTALDVILEENMIEN-------AY 148 (242)
Q Consensus 87 ~~sK~~~-~g~~~~g~~~~~------~~~~~~l~~~----~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~-------~~ 148 (242)
++||.++ +| +|+||++.+ +++++.+... .....++.|.+++.++.++++ ++.+.++ ++
T Consensus 224 s~SK~~~~pG-lRlG~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~s~~~q~a~~~~l~---~~~~~~~~~~~~~~~~ 299 (388)
T PRK08637 224 GATKEEFVWG-FRVGFITFGTKAGSSQTVKEALEKKVKGLIRSNISNGPHPSQSAVLRALN---SPEFDKEKQEKFQILK 299 (388)
T ss_pred cccccCCCcc-cceEEEEEccccCCcHHHHHHHHHHHHHHhhcccCCCCcHHHHHHHHHhC---CHHHHHHHHHHHHHHH
Confidence 4899877 89 999999853 5666665431 111223567788877776664 2233333 33
Q ss_pred HHHHHHHHHHHhhcC--CCCCCeEeeeceeEEEEecCCchhHHHHHHHHH-HCCceeccCCCCEEEEeccCcCCHHHHHH
Q psy6548 149 KMGEIFRSELRSRLS--PDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMK-DAGLVTKPISNNIIRLSPALNITEQELRE 225 (242)
Q Consensus 149 ~~~~~l~~~l~~~l~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~gi~~~~~~~~~lR~~~~~~~t~e~i~~ 225 (242)
++.+.+.+.| +..+ ..+....+..|+++|++++. .+..+++++|. ++||.+.+.+++++|++... .+++++++
T Consensus 300 ~r~~~~~~~l-~~~~~~~~~~~~~~~~g~~~~~~l~~--~~~~~l~~~l~~~~gv~~~~~~~~~iRi~~~~-~~~~~i~~ 375 (388)
T PRK08637 300 ERYEKTKEVL-YDGKYDDAWQAYPFNSGYFMCLKLKG--VDAEELRVHLLEKYGIGTIALNETDLRIAFSC-VEEEDIPE 375 (388)
T ss_pred HHHHHHHHHH-HhhCCCCCcccccccceEEEEecCCh--HHHHHHHHHHhhhcceEEEeccCCceEEEeec-CCHHHHHH
Confidence 3444444445 3321 12223344578899999864 46788999996 57998887677899999655 47899999
Q ss_pred HHHHHHHHHHHH
Q psy6548 226 GLDIIINTINTM 237 (242)
Q Consensus 226 ~~~~l~~~l~~~ 237 (242)
++++|.++++.+
T Consensus 376 ~~~~l~~~~~~~ 387 (388)
T PRK08637 376 LFDSIYKAIKDL 387 (388)
T ss_pred HHHHHHHHHHhc
Confidence 999999998764
No 209
>PRK05166 histidinol-phosphate aminotransferase; Provisional
Probab=99.82 E-value=3.8e-19 Score=150.69 Aligned_cols=208 Identities=17% Similarity=0.147 Sum_probs=140.5
Q ss_pred hhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCc-ccccccC-CCCCCEEE-
Q psy6548 12 VPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGK-LLAIHYE-DVRPDIVI- 87 (242)
Q Consensus 12 ~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~-~~~~~~~-~~~~~~~~- 87 (242)
+++ +...+++++++++.+++|++|.+. +.+.+++|+++|++ ++++|+||+|.+|...+. ....... ...+++++
T Consensus 149 ~~~l~~~~~~~~~~v~l~~p~NPtG~~~-~~~~~~~l~~~~~~-~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~vi~i 226 (371)
T PRK05166 149 LDALCAAVARAPRMLMFSNPSNPVGSWL-TADQLARVLDATPP-ETLIVVDEAYAEYAAGDDYPSALTLLKARGLPWIVL 226 (371)
T ss_pred HHHHHHhhhcCCCEEEEeCCCCCCCCCC-CHHHHHHHHHhCCC-CcEEEEECcHHHhcCCcCcccHHHHHhhcCCCEEEE
Confidence 444 333345678888888999999654 66778888888864 889999999987752221 1111111 11223333
Q ss_pred --eecccc-CCccchheeEe-ChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHHHHhhc
Q psy6548 88 --LGKALS-GGLYPISAVLA-DDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVIL-EENMIENAYKMGEIFRSELRSRL 162 (242)
Q Consensus 88 --~sK~~~-~g~~~~g~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~-~~~~~~~~~~~~~~l~~~l~~~l 162 (242)
|||.|+ +| +|+||++. ++++++.+... ...++.+.+++.++.+++.... -+...+.++++++.+.+.| +..
T Consensus 227 ~SfSK~~~l~G-lRiG~~i~~~~~l~~~~~~~--~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L-~~~ 302 (371)
T PRK05166 227 RTFSKAYGLAG-LRVGYGLVSDPELVGLLDRV--RTPFNVNGAAQAAALAALDDEEHLAKGVALALAERERLKKEL-AEM 302 (371)
T ss_pred eechHhhhcch-hheeeeecCCHHHHHHHHHh--ccCCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHH-HHC
Confidence 999999 99 99999765 67787777542 2345677788777666664211 1234456667777788888 554
Q ss_pred CCCCCCeEeeeceeEEEEecCCchhHHHHHHHHHHCCceeccC----CCCEEEEeccCcCCHHHHHHHHHHHHHHH
Q psy6548 163 SPDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPI----SNNIIRLSPALNITEQELREGLDIIINTI 234 (242)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~----~~~~lR~~~~~~~t~e~i~~~~~~l~~~l 234 (242)
+ .. ..+..|+++|++++. +..+++++|.++||.+.|+ ..+++|+++ .++++++++.+.|++++
T Consensus 303 g--~~-~~p~~g~fl~~~~~~---~~~~l~~~l~~~gi~v~p~~~~~~~~~iRi~~---~~~~~~~~l~~~l~~i~ 369 (371)
T PRK05166 303 G--YR-IAPSRANFLFFDARR---PASAVAEALLRQGVIVKPWKQPGFETFIRVSI---GSPEENDHFVAALDKVL 369 (371)
T ss_pred c--Ce-eCCCcCCEEEEeCCC---CHHHHHHHHHHCCeEEecCCCCCCCCeEEEEc---CCHHHHHHHHHHHHHHh
Confidence 3 22 234557888988654 3678999999999999876 257899993 36778888888887764
No 210
>PLN02231 alanine transaminase
Probab=99.82 E-value=5.4e-19 Score=155.25 Aligned_cols=213 Identities=12% Similarity=0.120 Sum_probs=141.5
Q ss_pred CEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCcc-Cccc-cccc----CCC---CCCEEE---e
Q psy6548 21 NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRT-GKLL-AIHY----EDV---RPDIVI---L 88 (242)
Q Consensus 21 ~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~-g~~~-~~~~----~~~---~~~~~~---~ 88 (242)
+++++++.+++|++| .+.+.+.+++|+++|++||++||+||+|.++... +..+ ++.. .+. ...+++ +
T Consensus 271 ~~k~ivl~nP~NPTG-~vls~e~l~~Iv~~a~~~~l~lI~DEvY~~l~y~~~~~~~s~~~~~~~~g~~~~~~~vi~l~S~ 349 (534)
T PLN02231 271 TVRALVVINPGNPTG-QVLAEENQRDIVEFCKQEGLVLLADEVYQENVYVPDKKFHSFKKVARSMGYGEKDISLVSFQSV 349 (534)
T ss_pred CeEEEEEeCCCCCCC-cCCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCcccHHHHHhhhccccCCceEEEEecc
Confidence 688888888899999 5667899999999999999999999999886442 2211 1111 111 123443 8
Q ss_pred eccc-c-CCccchheeEe---ChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHH-------H----H-hccHHHHHHHHH
Q psy6548 89 GKAL-S-GGLYPISAVLA---DDEVMGTLVPGTHGSTYGGNPLACKLAMTALDV-------I----L-EENMIENAYKMG 151 (242)
Q Consensus 89 sK~~-~-~g~~~~g~~~~---~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~-------~----~-~~~~~~~~~~~~ 151 (242)
||++ + +| +|+||+++ ++++++.+..... .+.+.+.+.+.++..+++. . + .+.+.+.+++++
T Consensus 350 SK~~~g~pG-lRiGy~~~~~~~~~l~~~l~k~~~-~~~~s~~~~Q~~~~~~l~~p~~~~~~y~~~~~~~~~i~~~~~~r~ 427 (534)
T PLN02231 350 SKGYYGECG-KRGGYMEVTGFTSDVREQIYKVAS-VNLCSNISGQILASLVMSPPKPGDESYESYMAEKDGILSSLARRA 427 (534)
T ss_pred CcccccCCc-cceEEEEEecCCHHHHHHHHHHHh-hhcCCChHHHHHHHHHhCCCCCCcchHHHHHHHHHHHHHHHHHHH
Confidence 9987 5 79 99999976 5778877755322 2334455666665555521 1 0 123456788888
Q ss_pred HHHHHHHHhhcCCCCCCeEeeeceeEEEEe--cCCch---------hHHHHHHHHH-HCCceeccC-------CCCEEEE
Q psy6548 152 EIFRSELRSRLSPDIVPVVRGKGLLNAIVL--DKSIL---------EVYDVCIKMK-DAGLVTKPI-------SNNIIRL 212 (242)
Q Consensus 152 ~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~--~~~~~---------~~~~~~~~l~-~~gi~~~~~-------~~~~lR~ 212 (242)
+.+.+.| +.++ ++....+..+++.|.++ +.... ....++.+|+ +.||.+.|+ +..++|+
T Consensus 428 ~~l~~~L-~~~~-gi~~~~p~Ggfylw~~l~lp~~~~~~~~~~~~~~d~~~~~~Ll~~~GV~vvPGs~Fg~~~g~~~~Ri 505 (534)
T PLN02231 428 KTLEDAL-NSLE-GVTCNKAEGAMYLFPRIHLPQKAIKAAEAAKTAPDAFYCKRLLNATGIVVVPGSGFGQVPGTWHFRC 505 (534)
T ss_pred HHHHHHH-hcCC-CceecCCCeeeEEeccccCcHHHHHHHhhcCCCcHHHHHHHHHHhcCEEEeCCcccCCCCCCCeEEE
Confidence 8888888 6663 22223345677888444 32100 1223556666 569999986 2346999
Q ss_pred eccCcCCHHHHHHHHHHHHHHHHHHhhh
Q psy6548 213 SPALNITEQELREGLDIIINTINTMAAK 240 (242)
Q Consensus 213 ~~~~~~t~e~i~~~~~~l~~~l~~~~~~ 240 (242)
+ +..+++++++++++|.+.+++..++
T Consensus 506 t--~~~~~e~l~eal~RL~~~~~~~~~~ 531 (534)
T PLN02231 506 T--ILPQEDKIPAIVSRLTEFHKSFMDE 531 (534)
T ss_pred E--eCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9 5678999999999999998876543
No 211
>TIGR01979 sufS cysteine desulfurases, SufS subfamily. This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved.
Probab=99.82 E-value=2.2e-18 Score=147.56 Aligned_cols=213 Identities=13% Similarity=0.142 Sum_probs=148.8
Q ss_pred Chhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEE--
Q psy6548 11 QVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVI-- 87 (242)
Q Consensus 11 d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~-- 87 (242)
|+++ +...+++++++++..+++++|...+ +++|.++|++||+++++|++|+ ++.. ...... ..+|+++
T Consensus 148 ~~~~l~~~i~~~~~lv~~~~~~~~tG~~~~----~~~i~~~~~~~~~~~ivD~a~~-~g~~--~~~~~~--~~~d~~~~s 218 (403)
T TIGR01979 148 DLDDLEKLLTEKTKLVAITHVSNVLGTVNP----VEEIAKLAHQVGAKVLVDGAQA-VPHM--PVDVQA--LDCDFYVFS 218 (403)
T ss_pred CHHHHHHHhccCCeEEEEEcccccccccCC----HHHHHHHHHHcCCEEEEEchhh-cCcc--ccCccc--cCCCEEEEe
Confidence 3454 4444668999999999999998877 8999999999999999999995 2211 122222 3457766
Q ss_pred eeccccCCccchheeEeChhhhhccCCCCCCC---------------------CCCCCHHHHHHHHHHHHHHHh---ccH
Q psy6548 88 LGKALSGGLYPISAVLADDEVMGTLVPGTHGS---------------------TYGGNPLACKLAMTALDVILE---ENM 143 (242)
Q Consensus 88 ~sK~~~~g~~~~g~~~~~~~~~~~l~~~~~~~---------------------~~~~~~~~~~~a~a~l~~~~~---~~~ 143 (242)
++|.+| + .++|+++.++++++.+.+...++ ..+.+..++.++.++++.+.+ +.+
T Consensus 219 ~~K~~g-p-~G~g~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~~~~~g~~~~ 296 (403)
T TIGR01979 219 GHKMYG-P-TGIGVLYGKEELLEQMPPFLGGGEMIAEVSFEETTYNEAPHKFEAGTPNIAGVIGLGAAIDYLEAIGLENI 296 (403)
T ss_pred cccccC-C-CCceEEEEchHHHhcCCCeecCCCceeecccCccccCCChhhcCCCCccHHHHHHHHHHHHHHHHhCHHHH
Confidence 569775 3 45889989988877765432111 012344566666677776654 345
Q ss_pred HHHHHHHHHHHHHHHHhhcCC-CCCC--eEeeeceeEEEEecCCchhHHHHHHHHHHCCceeccCC------------CC
Q psy6548 144 IENAYKMGEIFRSELRSRLSP-DIVP--VVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPIS------------NN 208 (242)
Q Consensus 144 ~~~~~~~~~~l~~~l~~~l~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~------------~~ 208 (242)
.++..++++++++.| +.++. .+.. .....+.++.+.++. .+..++.+.|.++||.++.+. ++
T Consensus 297 ~~~~~~l~~~l~~~l-~~~~g~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~~~L~~~gI~v~~g~~~~~~~~~~~~~~~ 373 (403)
T TIGR01979 297 EAHEHELTAYALERL-GEIPGLRIYGPRDAEDRGGIISFNVEG--VHPHDVGTILDEEGIAVRSGHHCAQPLMRRFGVPA 373 (403)
T ss_pred HHHHHHHHHHHHHHH-hcCCCEEEeCCCCccccCceEEEEeCC--cCHHHHHHHHhhCCEEEcchhhhhHHHHHHhCCCC
Confidence 678888888888888 65532 1111 111235677777765 356788899999999997532 57
Q ss_pred EEEEeccCcCCHHHHHHHHHHHHHHHHHH
Q psy6548 209 IIRLSPALNITEQELREGLDIIINTINTM 237 (242)
Q Consensus 209 ~lR~~~~~~~t~e~i~~~~~~l~~~l~~~ 237 (242)
.+|++++.++|++|++++++.|+++++.+
T Consensus 374 ~iRiS~~~~~t~~di~~l~~~l~~~~~~~ 402 (403)
T TIGR01979 374 TCRASFYIYNTEEDIDALVEALKKVRKFF 402 (403)
T ss_pred EEEEEeccCCCHHHHHHHHHHHHHHHHHh
Confidence 89999999999999999999999877654
No 212
>TIGR01976 am_tr_V_VC1184 cysteine desulfurase family protein, VC1184 subfamily. This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family (pfam00266). The most closely related characterized proteins are active as cysteine desulfurases, selenocysteine lyases, or both; some are involved in FeS cofactor biosynthesis and are designated NifS. An active site Cys residue present in those sequences, in motifs resembling GHHC or GSAC, is not found in this family. The function of members of this family is unknown, but seems unlike to be as an aminotransferase.
Probab=99.82 E-value=1.2e-18 Score=148.84 Aligned_cols=205 Identities=16% Similarity=0.170 Sum_probs=139.0
Q ss_pred Chhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEE--
Q psy6548 11 QVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVI-- 87 (242)
Q Consensus 11 d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~-- 87 (242)
|++. +...++++++++++.++|++|.+.+ +++|.++|++||+++++|++|. .+ .. ...+. ...+|+++
T Consensus 145 ~~~~l~~~i~~~~~lv~i~~~~n~tG~~~~----~~~i~~~~~~~~~~~ivD~a~~-~~-~~-~~~~~--~~~~d~~~~s 215 (397)
T TIGR01976 145 HPDDLASLLSPRTRLVAVTAASNTLGSIVD----LAAITELVHAAGALVVVDAVHY-AP-HG-LIDVQ--ATGADFLTCS 215 (397)
T ss_pred CHHHHHHhcCCCceEEEEeCCCCCCCccCC----HHHHHHHHHHcCCEEEEehhhh-cc-cc-CCCHH--HcCCCEEEEe
Confidence 3455 4444567999999999999998776 9999999999999999999985 21 11 11222 23457665
Q ss_pred eeccccCCccchheeEeChhhhhccCCCCCCCCC----------CCCHHHHHHHHHHHHHHHhc----------------
Q psy6548 88 LGKALSGGLYPISAVLADDEVMGTLVPGTHGSTY----------GGNPLACKLAMTALDVILEE---------------- 141 (242)
Q Consensus 88 ~sK~~~~g~~~~g~~~~~~~~~~~l~~~~~~~~~----------~~~~~~~~~a~a~l~~~~~~---------------- 141 (242)
++|++| .++|++++++++++.+.+....+.+ +.+....++..++++.+.+.
T Consensus 216 ~~K~~g---~~~G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~~~~~~ 292 (397)
T TIGR01976 216 AYKFFG---PHMGILWGRPELLMNLPPYKLTFSYDTGPERFELGTPQYELLAGVVAAVDYLAGLGESANGSRRERLVASF 292 (397)
T ss_pred chhhcC---CceEEEEEcHHHHhhCCCccccCccCCCcchhcCCCCCHHHHHHHHHHHHHHHHhCcccccchhhhhhHHH
Confidence 669986 5689999999988877764221111 22334455555666665432
Q ss_pred -cHHHHHHHHHHHHHHHHHhhcCC-CCCCe--EeeeceeEEEEecCCchhHHHHHHHHHHCCceeccC------------
Q psy6548 142 -NMIENAYKMGEIFRSELRSRLSP-DIVPV--VRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPI------------ 205 (242)
Q Consensus 142 -~~~~~~~~~~~~l~~~l~~~l~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~------------ 205 (242)
...++..++.+++++.| +.++. .+... ....+.++.+.++. .+..++.++|.++||.++.+
T Consensus 293 ~~~~~~~~~l~~~l~~~L-~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~ 369 (397)
T TIGR01976 293 QAIDAYENRLAEYLLVGL-SDLPGVTLYGVARLAARVPTVSFTVHG--LPPQRVVRRLADQGIDAWAGHFYAVRLLRRLG 369 (397)
T ss_pred HHHHHHHHHHHHHHHHHH-hcCCCEEEeCCCCccCCCceEEEEeCC--cCHHHHHHHHHHCCeEEEeCccchHHHHHHhC
Confidence 12445566777777777 55542 11111 12245566666654 35778999999999999754
Q ss_pred ---CCCEEEEeccCcCCHHHHHHHHHHH
Q psy6548 206 ---SNNIIRLSPALNITEQELREGLDII 230 (242)
Q Consensus 206 ---~~~~lR~~~~~~~t~e~i~~~~~~l 230 (242)
..+.+|++++.++|++|++++++.|
T Consensus 370 ~~~~~~~iRis~~~~~t~~di~~l~~~l 397 (397)
T TIGR01976 370 LNDEGGVVRVGLAHYNTAEEVDRLLEAL 397 (397)
T ss_pred CCCCCCeEEEEeeccCCHHHHHHHHHhC
Confidence 2468999999999999999999864
No 213
>PLN02855 Bifunctional selenocysteine lyase/cysteine desulfurase
Probab=99.82 E-value=2.2e-18 Score=148.51 Aligned_cols=216 Identities=14% Similarity=0.178 Sum_probs=150.7
Q ss_pred Chhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEE--
Q psy6548 11 QVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVI-- 87 (242)
Q Consensus 11 d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~-- 87 (242)
|+++ +...+.++++|++..++|++|.+.| +++|.++|++||+++++|++|. ++.. +.... ...+|+++
T Consensus 162 ~~~~l~~~i~~~t~lv~i~~~~n~tG~~~~----~~~I~~l~~~~g~~vivD~a~~-~g~~--~~~~~--~~~~d~~~~s 232 (424)
T PLN02855 162 DVEQLKELLSEKTKLVATHHVSNVLGSILP----VEDIVHWAHAVGAKVLVDACQS-VPHM--PVDVQ--TLGADFLVAS 232 (424)
T ss_pred CHHHHHHHhccCceEEEEeCccccccccCC----HHHHHHHHHHcCCEEEEEhhhh-cCCc--CCCch--hcCCCEEEee
Confidence 4455 3333558999999999999998887 8899999999999999999995 2211 12222 23457766
Q ss_pred eeccccCCccchheeEeChhhhhccCCCCCCCC------------------C---CCCHHHHHHHHHHHHHHHh---ccH
Q psy6548 88 LGKALSGGLYPISAVLADDEVMGTLVPGTHGST------------------Y---GGNPLACKLAMTALDVILE---ENM 143 (242)
Q Consensus 88 ~sK~~~~g~~~~g~~~~~~~~~~~l~~~~~~~~------------------~---~~~~~~~~~a~a~l~~~~~---~~~ 143 (242)
++|.+| + .++|++++++++++.+.+...++. | +.+..+.++..++++.+.+ +.+
T Consensus 233 ~~K~~g-p-~G~G~l~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~r~e~GT~~~~~~~~l~~al~~~~~~g~~~i 310 (424)
T PLN02855 233 SHKMCG-P-TGIGFLWGKSDLLESMPPFLGGGEMISDVFLDHSTYAPPPSRFEAGTPAIGEAIGLGAAIDYLSEIGMDRI 310 (424)
T ss_pred cccccC-C-CccEEEEEchhhhhcCCCEecCCCceeeeecCccccCCChhhccCCChHHHHHHHHHHHHHHHHHhCHHHH
Confidence 669544 4 468999999888877765321110 1 1334455556667776654 346
Q ss_pred HHHHHHHHHHHHHHHHhhcCC-CCCCe----EeeeceeEEEEecCCchhHHHHHHHHHHC-CceeccCC-----------
Q psy6548 144 IENAYKMGEIFRSELRSRLSP-DIVPV----VRGKGLLNAIVLDKSILEVYDVCIKMKDA-GLVTKPIS----------- 206 (242)
Q Consensus 144 ~~~~~~~~~~l~~~l~~~l~~-~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-gi~~~~~~----------- 206 (242)
.++.+++++++++.| +.++. .+... ....+.++.+.++. ....++.+.|.++ ||.++.+.
T Consensus 311 ~~~~~~l~~~l~~~L-~~~~g~~i~~~~~~~~~~r~~~v~~~~~~--~~~~~v~~~L~~~~gI~v~~g~~c~~~~~~~~g 387 (424)
T PLN02855 311 HEYEVELGTYLYEKL-SSVPGVRIYGPKPSEGVGRAALCAFNVEG--IHPTDLSTFLDQQHGVAIRSGHHCAQPLHRYLG 387 (424)
T ss_pred HHHHHHHHHHHHHHH-hcCCCEEEeCCCcccccCcccEEEEEECC--cCHHHHHHHhcccCCEEEechhhhhHHHHHHhC
Confidence 677888888888888 55532 11111 11234577777765 3567899999887 99987532
Q ss_pred -CCEEEEeccCcCCHHHHHHHHHHHHHHHHHHhhh
Q psy6548 207 -NNIIRLSPALNITEQELREGLDIIINTINTMAAK 240 (242)
Q Consensus 207 -~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~~~~ 240 (242)
.+.+|++++.++|++|++++++.|+++++.+..-
T Consensus 388 ~~~~iRiS~~~ynt~~di~~l~~~l~~~~~~~~~~ 422 (424)
T PLN02855 388 VNASARASLYFYNTKEEVDAFIHALKDTIAFFSSF 422 (424)
T ss_pred CCCeEEEEeccCCCHHHHHHHHHHHHHHHHHHHhh
Confidence 3679999999999999999999999998876543
No 214
>PRK04635 histidinol-phosphate aminotransferase; Provisional
Probab=99.82 E-value=3e-19 Score=150.36 Aligned_cols=195 Identities=20% Similarity=0.247 Sum_probs=134.6
Q ss_pred CCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEE---eecccc-CC
Q psy6548 20 PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVI---LGKALS-GG 95 (242)
Q Consensus 20 ~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~---~sK~~~-~g 95 (242)
+++++|++++++|++|.+. +.+.++++++.|+ +++||+||+|.+|.... .. .......+++++ |||+++ +|
T Consensus 146 ~~~~li~i~nP~NPTG~~~-~~~~l~~l~~~~~--~~~vivDeay~~~~~~~-s~-~~~~~~~~~~iv~~S~SK~~~l~G 220 (354)
T PRK04635 146 DGAKLVFICNPNNPTGTVI-DRADIEQLIEMTP--DAIVVVDEAYIEFCPEY-SV-ADLLASYPNLVVLRTLSKAFALAG 220 (354)
T ss_pred cCCCEEEEeCCCCCCCccC-CHHHHHHHHHhCC--CcEEEEeCchHhhccCc-ch-HHHHhhCCCEEEEechHHHhhhhH
Confidence 5788999999999999665 5566777777665 49999999998774221 11 111112234433 899998 89
Q ss_pred ccchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHH--Hh-ccHHHHHHHHHHHHHHHHHhhcCCCCCCeEee
Q psy6548 96 LYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVI--LE-ENMIENAYKMGEIFRSELRSRLSPDIVPVVRG 172 (242)
Q Consensus 96 ~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~--~~-~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~ 172 (242)
+|+||+++++++++.+... ...++.+.+.+.++.++++.. +. ++..+.+++.++.+.+.| +.++. + ...++
T Consensus 221 -lRlG~~i~~~~~~~~l~~~--~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L-~~~~~-~-~~~~~ 294 (354)
T PRK04635 221 -ARCGFTLANEELIEILMRV--IAPYPVPLPVSEIATQALSEAGLARMKFQVLDLNAQGARLQAAL-SMYGG-A-KVLEG 294 (354)
T ss_pred -HHHhhhhCCHHHHHHHHhh--cCCCCCCHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH-HhCCC-c-eECCC
Confidence 9999999999998887653 224556666766666666421 11 223455667778888888 55542 1 11233
Q ss_pred eceeEEEEecCCchhHHHHHHHHHHCCceeccCC----CCEEEEeccCcCCHHHHHHHHHHHHH
Q psy6548 173 KGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPIS----NNIIRLSPALNITEQELREGLDIIIN 232 (242)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~----~~~lR~~~~~~~t~e~i~~~~~~l~~ 232 (242)
.|.++|+.++. ..++.+.|.++||.++..+ ++++|++ ..+.++++++++.|++
T Consensus 295 ~g~f~~~~~~~----~~~~~~~l~~~gv~v~~~~~~~~~~~lRis---~~~~e~~~~l~~al~~ 351 (354)
T PRK04635 295 NGNYVLAKFDD----VDAVFKALWDAGIVARAYKDPRLANCIRFS---FSNRAETDKLIGLIRN 351 (354)
T ss_pred CCcEEEEECCC----HHHHHHHHHHCCEEEEECCCCCCCCeEEEE---eCCHHHHHHHHHHHHH
Confidence 46788887753 4678889999999997542 5689999 3588999999999875
No 215
>cd06453 SufS_like Cysteine desulfurase (SufS)-like. This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine.
Probab=99.82 E-value=3.1e-18 Score=145.23 Aligned_cols=206 Identities=16% Similarity=0.211 Sum_probs=143.9
Q ss_pred Chhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEEee
Q psy6548 11 QVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILG 89 (242)
Q Consensus 11 d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~s 89 (242)
|+++ +...+.++++|++..+++++|...+ +++|.++|++||+++++|++|+ ++.. ..... ...+|++++|
T Consensus 128 d~~~l~~~l~~~~~~v~~~~~~~~tG~~~~----~~~i~~~~~~~~~~li~D~a~~-~~~~--~~~~~--~~~~d~~~~s 198 (373)
T cd06453 128 DLEALEKLLTERTKLVAVTHVSNVLGTINP----VKEIGEIAHEAGVPVLVDGAQS-AGHM--PVDVQ--DLGCDFLAFS 198 (373)
T ss_pred CHHHHHHHhcCCceEEEEeCcccccCCcCC----HHHHHHHHHHcCCEEEEEhhhh-cCce--eeecc--ccCCCEEEec
Confidence 4555 3333458899999999999997776 8999999999999999999986 2211 11112 2356888877
Q ss_pred --ccccCCccchheeEeChhhhhccCCCCCCC------------------CC---CCCHHHHHHHHHHHHHHHhc---cH
Q psy6548 90 --KALSGGLYPISAVLADDEVMGTLVPGTHGS------------------TY---GGNPLACKLAMTALDVILEE---NM 143 (242)
Q Consensus 90 --K~~~~g~~~~g~~~~~~~~~~~l~~~~~~~------------------~~---~~~~~~~~~a~a~l~~~~~~---~~ 143 (242)
|++++ .++|++++++++++.+.+...++ .+ +.+..++.+..++++.+... ++
T Consensus 199 ~~K~~~~--~g~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~l~~~g~~~~ 276 (373)
T cd06453 199 GHKMLGP--TGIGVLYGKEELLEEMPPYGGGGEMIEEVSFEETTYADLPHKFEAGTPNIAGAIGLGAAIDYLEKIGMEAI 276 (373)
T ss_pred cccccCC--CCcEEEEEchHHhhcCCCeecCCCccccccccccccCCCccccCCCCCCHHHHHHHHHHHHHHHHcCHHHH
Confidence 99885 46899999998888777532111 01 23344555556677776653 35
Q ss_pred HHHHHHHHHHHHHHHHhhcCC-CCCCeEeeeceeEEEEecCCchhHHHHHHHHHHCCceeccCC------------CCEE
Q psy6548 144 IENAYKMGEIFRSELRSRLSP-DIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPIS------------NNII 210 (242)
Q Consensus 144 ~~~~~~~~~~l~~~l~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~------------~~~l 210 (242)
.++.+++++++++.| +.++. .........+.++++.++. .+..++.++|.++||.+.++. .+.+
T Consensus 277 ~~~~~~~~~~l~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~l~~~gi~i~~g~~~~~~~~~~~~~~~~i 353 (373)
T cd06453 277 AAHEHELTAYALERL-SEIPGVRVYGDAEDRAGVVSFNLEG--IHPHDVATILDQYGIAVRAGHHCAQPLMRRLGVPGTV 353 (373)
T ss_pred HHHHHHHHHHHHHHH-hcCCCeEEeCCccccCCeEEEEECC--cCHHHHHHHHHHCCEEeccCccchhHHHHHhCCCCeE
Confidence 677777888888888 66542 1111112235677777764 367889999999999986432 5689
Q ss_pred EEeccCcCCHHHHHHHHHHH
Q psy6548 211 RLSPALNITEQELREGLDII 230 (242)
Q Consensus 211 R~~~~~~~t~e~i~~~~~~l 230 (242)
|++++..+|.+|+|++++.|
T Consensus 354 Ris~~~~~t~~di~~~~~~l 373 (373)
T cd06453 354 RASFGLYNTEEEIDALVEAL 373 (373)
T ss_pred EEEecCCCCHHHHHHHHhhC
Confidence 99999999999999999764
No 216
>TIGR02326 transamin_PhnW 2-aminoethylphosphonate--pyruvate transaminase. Members of this family are 2-aminoethylphosphonate--pyruvate transaminase. This enzyme acts on the most common type of naturally occurring phosphonate. It interconverts 2-aminoethylphosphonate plus pyruvate with 2-phosphonoacetaldehyde plus alanine. The enzyme phosphonoacetaldehyde hydrolase (EC 3.11.1.1), usually encoded by an adjacent gene, then cleaves the C-P bond of phosphonoacetaldehyde, adding water to yield acetaldehyde plus inorganic phosphate. Species with this pathway generally have an identified phosphonate ABC transporter but do not also have the multisubunit C-P lysase complex as found in Escherichia coli.
Probab=99.81 E-value=4.5e-18 Score=143.74 Aligned_cols=214 Identities=14% Similarity=0.146 Sum_probs=150.3
Q ss_pred Chhh--hcCCC-CCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEE
Q psy6548 11 QVPA--KLKSN-PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVI 87 (242)
Q Consensus 11 d~~~--~~~~~-~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~ 87 (242)
|+++ +.+.+ .+++.+.+..+.+++|.+.+ +++|.++|++||+++++|++|+ +|.. +..+..+ .+|+++
T Consensus 116 d~~~l~~~l~~~~~~~~v~~~~~~~~tG~~~~----i~~I~~l~~~~g~~livD~~~~-~g~~--~~~~~~~--~~D~~~ 186 (363)
T TIGR02326 116 DVVEVEAILAADPAITHIALVHCETTTGILNP----IEAVAKLAHRHGKVTIVDAMSS-FGGI--PIDIAEL--HIDYLI 186 (363)
T ss_pred CHHHHHHHHhhCCCccEEEEEeecCCccccCc----HHHHHHHHHHcCCEEEEEcccc-ccCc--ccchhhc--CccEEE
Confidence 4555 33333 35677788888899998776 8999999999999999999886 4322 2333333 457666
Q ss_pred --eeccccCCccchheeEeChhhhhccCCCCC------------------CCCCCCCHHHHHHHHHHHHHHHhc----cH
Q psy6548 88 --LGKALSGGLYPISAVLADDEVMGTLVPGTH------------------GSTYGGNPLACKLAMTALDVILEE----NM 143 (242)
Q Consensus 88 --~sK~~~~g~~~~g~~~~~~~~~~~l~~~~~------------------~~~~~~~~~~~~~a~a~l~~~~~~----~~ 143 (242)
++|+++|+ .++|+++.+++.++.+.+... ...|+.+...+.+..++++.+..+ +.
T Consensus 187 ~s~~K~l~~p-~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ft~~~~~~~al~~al~~l~~~g~~~~~ 265 (363)
T TIGR02326 187 SSANKCIQGV-PGFGFVIARQAELAACKGNARSLSLDLYDQWRCMEDNHGKWRFTSPTHVVHAFAQALLELEKEGGVAAR 265 (363)
T ss_pred ecCccccccC-CcceEEEECHHHHHHhhcCCCceeecHHHHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHHhhCHHHH
Confidence 66999877 678999999888776543111 123455666777777777766442 35
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCCeE-eeeceeEEEEecCC-chhHHHHHHHHHHCCceeccCC---CCEEEEeccCcC
Q psy6548 144 IENAYKMGEIFRSELRSRLSPDIVPVV-RGKGLLNAIVLDKS-ILEVYDVCIKMKDAGLVTKPIS---NNIIRLSPALNI 218 (242)
Q Consensus 144 ~~~~~~~~~~l~~~l~~~l~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~l~~~gi~~~~~~---~~~lR~~~~~~~ 218 (242)
.++++++++++++.| ++++....... ...+...++.++.. ..+...+.+.|.++||.++++. .+.+|++++..+
T Consensus 266 ~~~~~~~~~~l~~~L-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~L~~~gi~v~~g~~~~~~~iRi~~~~~~ 344 (363)
T TIGR02326 266 HQRYQQNQKTLVAGM-RALGFEPLLDDEIQSPIITSFYSPEDPDYRFADFYQRLKEQGFVIYPGKVSQVDCFRIGNIGEV 344 (363)
T ss_pred HHHHHHHHHHHHHHH-HHcCCeeccCcccCCceEEEEECCCCCCCCHHHHHHHHHHCCEEEECCcCCCCCEEEEecCCCC
Confidence 678888899999999 66653222111 12334566777652 1356789999999999998763 478999987788
Q ss_pred CHHHHHHHHHHHHHHHH
Q psy6548 219 TEQELREGLDIIINTIN 235 (242)
Q Consensus 219 t~e~i~~~~~~l~~~l~ 235 (242)
+.++++++++.|++++.
T Consensus 345 ~~edv~~~l~~l~~~l~ 361 (363)
T TIGR02326 345 DAADITRLLTAIGKAMY 361 (363)
T ss_pred CHHHHHHHHHHHHHHhC
Confidence 99999999999988753
No 217
>PRK07908 hypothetical protein; Provisional
Probab=99.81 E-value=2e-18 Score=145.21 Aligned_cols=197 Identities=12% Similarity=0.133 Sum_probs=135.2
Q ss_pred CCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEE---Eeecccc-C
Q psy6548 19 NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIV---ILGKALS-G 94 (242)
Q Consensus 19 ~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~---~~sK~~~-~ 94 (242)
+.+++++++.+++|++|.+.+ .++|.++|+ ++.++|+||+|.++. .+.......... ++++ +|||.++ +
T Consensus 137 ~~~~~~i~l~np~NPTG~~~~----~~~l~~l~~-~~~~iIvDe~y~~~~-~~~~~~l~~~~~-~~~i~i~S~SK~~~l~ 209 (349)
T PRK07908 137 PDDADLVVIGNPTNPTSVLHP----AEQLLALRR-PGRILVVDEAFADAV-PGEPESLAGDDL-PGVLVLRSLTKTWSLA 209 (349)
T ss_pred ccCCCEEEEcCCCCCCCCCcC----HHHHHHHHh-cCCEEEEECcchhhc-cCCccccccccC-CCEEEEeecccccCCc
Confidence 346788888889999997776 446677776 477888999998763 222212111111 2333 3899998 9
Q ss_pred CccchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHH--H-hccHHHHHHHHHHHHHHHHHhhcCCCCCCeEe
Q psy6548 95 GLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVI--L-EENMIENAYKMGEIFRSELRSRLSPDIVPVVR 171 (242)
Q Consensus 95 g~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~--~-~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~ 171 (242)
| +|+||+++++++++.+.+... .+..+++.+.++.+.++.. . -+...+.++++++.+.+.| +.++ +....+
T Consensus 210 G-lRiG~~~~~~~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L-~~~~--~~~~~p 283 (349)
T PRK07908 210 G-LRVGYALGAPDVLARLTRGRA--HWPVGTLQLEAIAACCAPRAVAEAAADAARLAADRAEMVAGL-RAVG--ARVVDP 283 (349)
T ss_pred c-ceeeeeecCHHHHHHHHhcCC--CCCccHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHH-HhCC--cEeccC
Confidence 9 999999999999888876432 2445566555544443310 0 1234566777788888888 5542 222233
Q ss_pred eeceeEEEEecCCchhHHHHHHHHHHCCceeccC------CCCEEEEeccCcCCHHHHHHHHHHHHHHHH
Q psy6548 172 GKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPI------SNNIIRLSPALNITEQELREGLDIIINTIN 235 (242)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~------~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~ 235 (242)
..|+++|++++. .+.+.+.|.++||.+.++ +++++|+++ .++++++++++.|++++.
T Consensus 284 ~~g~~~~~~~~~----~~~~~~~l~~~gI~v~~g~~f~~~~~~~vRis~---~~~~~~~~l~~al~~~~~ 346 (349)
T PRK07908 284 AAAPFVLVRVPD----AELLRKRLRERGIAVRRGDTFPGLDPDYLRLAV---RPRAEVPVLVQALAEILK 346 (349)
T ss_pred CCceEEEEECCc----HHHHHHHHHhCCEEEEECCCCCCCCCCeEEEEe---CCCccHHHHHHHHHHHHh
Confidence 568899998875 367888899999999875 257999994 478899999999988764
No 218
>TIGR01814 kynureninase kynureninase. This model describes kynureninase, a pyridoxal-phosphate enzyme. Kynurinine is a Trp breakdown product and a precursor for NAD. In Chlamydia psittaci, an obligate intracellular pathogen, kynureninase makes anthranilate, a Trp precursor, from kynurenine. This counters the tryptophan hydrolysis that occurs in the host cell in response to the pathogen.
Probab=99.81 E-value=5.3e-18 Score=145.33 Aligned_cols=201 Identities=14% Similarity=0.178 Sum_probs=139.8
Q ss_pred CCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEEe--eccccCCc
Q psy6548 19 NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVIL--GKALSGGL 96 (242)
Q Consensus 19 ~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~--sK~~~~g~ 96 (242)
++++++|+++++++++|.+.| +++|.++|++||+++++|++|+ +|.. ++.+..+ ..|++++ .|+++||
T Consensus 169 ~~~t~lv~~~~v~~~tG~~~~----~~~i~~~~~~~g~~~~vD~aq~-~G~~--~id~~~~--gvD~~~~s~hK~l~g~- 238 (406)
T TIGR01814 169 GDDIAVILLSGVQYYTGQLFD----MAAITRAAHAKGALVGFDLAHA-VGNV--PLDLHDW--GVDFACWCTYKYLNAG- 238 (406)
T ss_pred CCCeEEEEEeccccccceecC----HHHHHHHHHHcCCEEEEEcccc-cCCc--ccccccC--CCCEEEEcCccccCCC-
Confidence 578999999999999998887 9999999999999999999996 3222 2222333 4577764 4999877
Q ss_pred cchheeEeChhhhhccCCCCCCC-----------------------CCCCCHHHHHHHHHHHHHHHh---ccHHHHHHHH
Q psy6548 97 YPISAVLADDEVMGTLVPGTHGS-----------------------TYGGNPLACKLAMTALDVILE---ENMIENAYKM 150 (242)
Q Consensus 97 ~~~g~~~~~~~~~~~l~~~~~~~-----------------------~~~~~~~~~~~a~a~l~~~~~---~~~~~~~~~~ 150 (242)
.+ |.++..++..+.+.+...++ ..+.+..+++++.++++.+.+ +...++.+.+
T Consensus 239 pG-~~l~v~~~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~GT~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l 317 (406)
T TIGR01814 239 PG-AGAFVHEKHAHTERPRLAGWWGHARPTRFKMDNTLGLIPCGFRISNPPILSVAALRGSLDIFDQAGMEALRKKSLLL 317 (406)
T ss_pred CC-eEEEEehhhhhhcCCCCCcccCCCCccccccccccCCCccceeeCCccHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 55 55554443333343321110 012345566667778888755 3466788888
Q ss_pred HHHHHHHHHhhc-C--CCC--CC--eEeeeceeEEEEecCCchhHHHHHHHHHHCCceeccCCCCEEEEec-cCcCCHHH
Q psy6548 151 GEIFRSELRSRL-S--PDI--VP--VVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPISNNIIRLSP-ALNITEQE 222 (242)
Q Consensus 151 ~~~l~~~l~~~l-~--~~~--~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~lR~~~-~~~~t~e~ 222 (242)
.+++++.| +.+ + ..+ .. .....+.++.+.++ . +.+++.+.|.++||.+....++.+|+++ ++++|++|
T Consensus 318 ~~~l~~~l-~~~~~~~~~~~i~~~~~~~~r~~~v~~~~~-~--~~~~~~~~L~~~gi~v~~~~~~~iRiS~~~~~nt~~d 393 (406)
T TIGR01814 318 TDYLEELI-KARCGGPPVLTIITPRDHAQRGCQLSLTHP-V--PGKAVFQALIKRGVIGDKREPSVIRVAPVPLYNTFVD 393 (406)
T ss_pred HHHHHHHH-HhhcCCCCceEEeCCCChhhcCCeEEEEec-C--CHHHHHHHHHHCCEEEeccCCCeEEEechhccCCHHH
Confidence 88888888 443 1 111 11 11123456667666 2 4678999999999999877678999999 78999999
Q ss_pred HHHHHHHHHHHH
Q psy6548 223 LREGLDIIINTI 234 (242)
Q Consensus 223 i~~~~~~l~~~l 234 (242)
++++++.|++++
T Consensus 394 id~l~~~l~~~~ 405 (406)
T TIGR01814 394 VYDAVNVLEEIL 405 (406)
T ss_pred HHHHHHHHHHHh
Confidence 999999998764
No 219
>PLN02397 aspartate transaminase
Probab=99.80 E-value=1.4e-18 Score=149.40 Aligned_cols=203 Identities=13% Similarity=0.094 Sum_probs=134.0
Q ss_pred CCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCc--c-cccccC-CCCCCEE---Eeecc
Q psy6548 19 NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGK--L-LAIHYE-DVRPDIV---ILGKA 91 (242)
Q Consensus 19 ~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~--~-~~~~~~-~~~~~~~---~~sK~ 91 (242)
++++.++++.+++||+|. +.+.+.+++|+++|++||+++|+||+|.+|...+. . .....+ ....+++ +|||.
T Consensus 192 ~~~~~~i~~~~P~NPTG~-v~s~e~l~~i~~~a~~~~~~vI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vI~~~SfSK~ 270 (423)
T PLN02397 192 PDGSFVLLHACAHNPTGV-DPTPEQWEQISDLIKSKNHLPFFDSAYQGFASGDLDADAQSVRMFVEDGHEILVAQSYAKN 270 (423)
T ss_pred CCCCEEEEeCCCCCCCCC-CCCHHHHHHHHHHHHhCCcEEEEecccCCccCCchhhhhHHHHHHHhcCCcEEEEEECccc
Confidence 356888888989999995 55778899999999999999999999998754321 1 111111 1112333 38999
Q ss_pred cc-CCccchheeE--e-Chhhhhc----cCCCCCCCCCCCCHHHHHHHHHHHHHHH--------hccHHHHHHHHHHHHH
Q psy6548 92 LS-GGLYPISAVL--A-DDEVMGT----LVPGTHGSTYGGNPLACKLAMTALDVIL--------EENMIENAYKMGEIFR 155 (242)
Q Consensus 92 ~~-~g~~~~g~~~--~-~~~~~~~----l~~~~~~~~~~~~~~~~~~a~a~l~~~~--------~~~~~~~~~~~~~~l~ 155 (242)
++ +| +|+||++ . ++++++. +.........+.+.+++.++.++++... -++..+.++++++.+.
T Consensus 271 ~~~~G-~RvG~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~L~~~~~~~~~~~~~~~~~~~~~~rr~~l~ 349 (423)
T PLN02397 271 MGLYG-ERVGALSVVCKSADVAVRVKSQLKLIARPMYSNPPIHGASIVATILGDPELFSEWTKELKGMADRIISMRQKLY 349 (423)
T ss_pred CCCcc-ccceEEEEEeCCHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99 89 9999984 3 5554432 2221112223345566666555554211 1234567788888888
Q ss_pred HHHHhhcCC--CCCCeEeeeceeEEEEecCCchhHHHHHHHHH-HCCceeccCCCCEEEEeccCcCCHHHHHHHHHHHHH
Q psy6548 156 SELRSRLSP--DIVPVVRGKGLLNAIVLDKSILEVYDVCIKMK-DAGLVTKPISNNIIRLSPALNITEQELREGLDIIIN 232 (242)
Q Consensus 156 ~~l~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~gi~~~~~~~~~lR~~~~~~~t~e~i~~~~~~l~~ 232 (242)
+.| +.++. .+....+..|+++|+.++ .+++++|+ +.||.+.+.+ |+++.. .+.+.+++++++|.+
T Consensus 350 ~~L-~~~~~~~~~~~~~p~gg~fl~~~l~------~~~~~~Ll~~~~V~v~~~~----Ri~~~~-~~~~~i~~~~~~i~~ 417 (423)
T PLN02397 350 DAL-EARGSPGDWSHITKQIGMFSFTGLN------KEQVDRMTKEYHIYMTRDG----RISMAG-LSSKNVPYLADAIHA 417 (423)
T ss_pred HHH-HhcCCCCCCCcccCCceEEEecCCC------HHHHHHHHHhCCEEECCCC----eEEEee-CCHHHHHHHHHHHHH
Confidence 888 66541 121123557788888763 34777886 4599997543 888432 688999999999999
Q ss_pred HHH
Q psy6548 233 TIN 235 (242)
Q Consensus 233 ~l~ 235 (242)
++.
T Consensus 418 ~~~ 420 (423)
T PLN02397 418 VVT 420 (423)
T ss_pred HHh
Confidence 874
No 220
>PRK07392 threonine-phosphate decarboxylase; Validated
Probab=99.80 E-value=2.8e-18 Score=144.88 Aligned_cols=199 Identities=14% Similarity=0.133 Sum_probs=132.7
Q ss_pred CCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccc-cccCCCCCCEEE---eecccc-C
Q psy6548 20 PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLA-IHYEDVRPDIVI---LGKALS-G 94 (242)
Q Consensus 20 ~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~-~~~~~~~~~~~~---~sK~~~-~ 94 (242)
.+++++++.+++||+|.+++ .++|.++++++++ +|+||+|.+|...+.... .......+.+++ |||.|+ +
T Consensus 147 ~~~~~~~l~nP~NPTG~~~~----~~~l~~l~~~~~~-~IiDE~y~~~~~~~~~~s~~~~~~~~~~vi~i~S~SK~~~l~ 221 (360)
T PRK07392 147 TPNDGLLLNNPHNPTGKLWS----REAILPLLEQFAL-VVVDEAFMDFLPPDAEQSLIPCLAEYPNLIILRSLTKFYSLP 221 (360)
T ss_pred cCCCEEEEeCCCCCCCCCcC----HHHHHHHHHHCCE-EEEECchhhhccCccccchHHHhhcCCCEEEEEechhhhcCC
Confidence 46788888889999997775 4566777888885 666999988754332111 111122233333 899999 9
Q ss_pred CccchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHHHHhhcCCCCCCeEeee
Q psy6548 95 GLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVIL-EENMIENAYKMGEIFRSELRSRLSPDIVPVVRGK 173 (242)
Q Consensus 95 g~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~-~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~ 173 (242)
| +|+||+++++++++.+.... ..++.+.+++.++.++++... .+...+.++++++.+.+.| +.++. +. ..++.
T Consensus 222 G-lRiG~~v~~~~~~~~~~~~~--~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L-~~~~~-~~-~~~~~ 295 (360)
T PRK07392 222 G-LRLGYAIAHPDRLQRWQQWR--DPWPVNGLAAAAAIAALADRDFQQQTWAWLPPAREALFQGL-ASLPG-LT-PLPSA 295 (360)
T ss_pred c-hheeeeeCCHHHHHHHHhhC--CCCCCCHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHH-HhCCC-cE-ECCCC
Confidence 9 99999999998888876532 346678888888777765321 1223445666777777777 55532 11 12355
Q ss_pred ceeEEEEecCCchhHHHHHHHHH-HCCceeccC------CCCEEEEeccCcCCHHHHHHHHHHHHHHHH
Q psy6548 174 GLLNAIVLDKSILEVYDVCIKMK-DAGLVTKPI------SNNIIRLSPALNITEQELREGLDIIINTIN 235 (242)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~l~-~~gi~~~~~------~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~ 235 (242)
++++|++++. +..++++.++ ++||.+.|+ +++++|+++ .+.++.+++.+.|++++.
T Consensus 296 ~~fl~~~~~~---~~~~l~~~ll~~~gv~v~pg~~f~~~~~~~iRi~~---~~~~~~~~l~~al~~~~~ 358 (360)
T PRK07392 296 ANFLLVQSQG---SALQLQEKLLQQHRILIRDCLSFPELGDRYFRVAV---RTEAENQRLLEALAAILA 358 (360)
T ss_pred CCEEEEEcCC---CHHHHHHHHHhhCCEEEEeCCCCCCCCCCEEEEEe---CCHHHHHHHHHHHHHHhh
Confidence 7888888754 4577887764 679999876 247999993 345566777777666543
No 221
>cd06502 TA_like Low-specificity threonine aldolase (TA). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). TA catalyzes the conversion of L-threonine or L-allo-threonine to glycine and acetaldehyde in a secondary glycine biosynthetic pathway.
Probab=99.80 E-value=8e-19 Score=146.80 Aligned_cols=201 Identities=14% Similarity=0.114 Sum_probs=133.3
Q ss_pred CEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEecccccc--CccCcccccccCCCCCCEEE--eeccccCCc
Q psy6548 21 NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGL--GRTGKLLAIHYEDVRPDIVI--LGKALSGGL 96 (242)
Q Consensus 21 ~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~--~~~g~~~~~~~~~~~~~~~~--~sK~~~~g~ 96 (242)
++++|++++++|+ |... +.+.+++|+++|++||+++|+||+|..+ ...|.. .......+|+++ ++|+++.
T Consensus 127 ~~~~v~l~~p~n~-g~~~-~~~~l~~i~~~~~~~~~~livDea~~~~~~~~~~~~--~~~~~~~~d~~~~s~sK~~~~-- 200 (338)
T cd06502 127 PPSLVSLENTTEG-GTVY-PLDELKAISALAKENGLPLHLDGARLANAAAALGVA--LKTYKSGVDSVSFCLSKGGGA-- 200 (338)
T ss_pred cceEEEEEeecCC-cccc-CHHHHHHHHHHHHHcCCeEeechHHHHHHHHhcCCC--HHHHHhcCCEEEEeccccCCC--
Confidence 7899999998886 4344 6678999999999999999999998422 112221 111112345554 8899983
Q ss_pred cchhe-eEeChhhhhccCCCC--CCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhhcCCCCCCeEeee
Q psy6548 97 YPISA-VLADDEVMGTLVPGT--HGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELRSRLSPDIVPVVRGK 173 (242)
Q Consensus 97 ~~~g~-~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~ 173 (242)
+.|+ +++++++++.+.+.. .+++++.++++++++.++++.-......+++.++++++++.| +.++.. ..+..
T Consensus 201 -~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~L~~~~~~~~~~~~~~~~~~l~~~L-~~~~~~---~~~~~ 275 (338)
T cd06502 201 -PVGAVVVGNRDFIARARRRRKQAGGGMRQSGFLAAAGLAALENDLWLRRLRHDHEMARRLAEAL-EELGGL---ESEVQ 275 (338)
T ss_pred -ccceEEECCHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHH-HhcCCC---ccccc
Confidence 2244 557888888776532 224445556666666666653111234577777888899999 666531 11234
Q ss_pred ceeEEEEecCCchhHHHHHHHHH---HCCceeccCCCCEEEEeccCcCCHHHHHHHHHHHHH
Q psy6548 174 GLLNAIVLDKSILEVYDVCIKMK---DAGLVTKPISNNIIRLSPALNITEQELREGLDIIIN 232 (242)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~l~---~~gi~~~~~~~~~lR~~~~~~~t~e~i~~~~~~l~~ 232 (242)
+.++.+.++........+.+.+. ++|+.+.+.+.+++|+++++.++++|++++++++++
T Consensus 276 ~~~~~v~~~~~~~~~~~l~~~l~~~~~~gi~~~~~~~~~lRi~~~~~~~~~~i~~~~~~l~~ 337 (338)
T cd06502 276 TNIVLLDPVEANAVFVELSKEAIERRGEGVLFYAWGEGGVRFVTHWDTTEEDVDELLSALKA 337 (338)
T ss_pred CCeEEEecCCccHHHHHHHHHHHHhhhCCEEEEecCCCeEEEEeecCCCHHHHHHHHHHHhc
Confidence 55666666433233444555554 689999887669999999999999999999998864
No 222
>TIGR03402 FeS_nifS cysteine desulfurase NifS. Members of this protein family are NifS, one of several related families of cysteine desulfurase involved in iron-sulfur (FeS) cluster biosynthesis. NifS is part of the NIF system, usually associated with other nif genes involved in nitrogenase expression and nitrogen fixation. The protein family is given a fairly broad interpretation here. It includes a clade nearly always found in extended nitrogen fixation genomic regions, plus a second clade more closely related to the first than to IscS and also part of NifS-like/NifU-like systems. This model does not extend to a more distantly clade found in the epsilon proteobacteria such as Helicobacter pylori, also named NifS in the literature, built instead in TIGR03403.
Probab=99.80 E-value=1.2e-17 Score=141.89 Aligned_cols=212 Identities=16% Similarity=0.195 Sum_probs=142.4
Q ss_pred Chhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEEee
Q psy6548 11 QVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILG 89 (242)
Q Consensus 11 d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~s 89 (242)
|+++ +...++++++++++.++|++|.+.+ +++|.++|++||+++++|++|+ ++.. +. +......|++++|
T Consensus 125 ~~~~l~~~i~~~~~lv~i~~~~n~tG~~~~----~~~I~~l~~~~g~~vivD~~~~-~g~~--~~--~~~~~~~D~~~~s 195 (379)
T TIGR03402 125 DLEELRAAITDDTALVSVMWANNETGTIFP----IEEIGEIAKERGALFHTDAVQA-VGKI--PI--DLKEMNIDMLSLS 195 (379)
T ss_pred CHHHHHHhcCCCcEEEEEEcccCCeeeccc----HHHHHHHHHHcCCEEEEECccc-cccc--cc--CcccCCCCEEEEc
Confidence 4455 4444568899999999999998776 7899999999999999999996 3211 22 2223467888887
Q ss_pred --ccccCCccchheeEeChhhhhccCCCCCC-------CCCCCCHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHH
Q psy6548 90 --KALSGGLYPISAVLADDEVMGTLVPGTHG-------STYGGNPLACKLAMTALDVILE--ENMIENAYKMGEIFRSEL 158 (242)
Q Consensus 90 --K~~~~g~~~~g~~~~~~~~~~~l~~~~~~-------~~~~~~~~~~~~a~a~l~~~~~--~~~~~~~~~~~~~l~~~l 158 (242)
| +.|+ .++|+++.+++. .+.+...+ ...+.+.....+..++++.+.+ ++..++.+++++++++.|
T Consensus 196 ~~K-~~gp-~G~g~l~v~~~~--~~~p~~~g~~~~~~~~~gt~~~~~~~~l~~al~~~~~~~~~~~~~~~~l~~~l~~~l 271 (379)
T TIGR03402 196 GHK-LHGP-KGVGALYIRKGT--RFRPLLRGGHQERGRRAGTENVPGIVGLGKAAELATEHLEEENTRVRALRDRLEAGL 271 (379)
T ss_pred HHH-cCCC-CceEEEEECCCC--CCCCcccCCccCCCcCCCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 9 5555 568888777654 23332211 1123445556666667776644 344577778888888888
Q ss_pred Hhh-cCCC-CCCeEe-eeceeEEEEecCCchhHHHHHHHHHHCCceeccCC-----------------------CCEEEE
Q psy6548 159 RSR-LSPD-IVPVVR-GKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPIS-----------------------NNIIRL 212 (242)
Q Consensus 159 ~~~-l~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~-----------------------~~~lR~ 212 (242)
+. ++.. ...... .....+.+.++. .+..++...|.++||.++.+. .+.+|+
T Consensus 272 -~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~gI~v~~g~~c~~~~~~~~~~~~~lg~~~~~~~~~vR~ 348 (379)
T TIGR03402 272 -LARIPDARLNGDPTKRLPNTVNISFEY--IEGEAILLLLDMEGICASSGSACTSGSLEPSHVLRAMGVPHTAAHGSIRF 348 (379)
T ss_pred -HhhCCCEEEeCCCccCCCCEEEEEecC--CCHHHHHHhhccCCEEEEchhhcCCCCCCcCHHHHHcCCChhhcCceEEE
Confidence 43 4321 111111 111234344443 356788999989999997531 368999
Q ss_pred eccCcCCHHHHHHHHHHHHHHHHHHh
Q psy6548 213 SPALNITEQELREGLDIIINTINTMA 238 (242)
Q Consensus 213 ~~~~~~t~e~i~~~~~~l~~~l~~~~ 238 (242)
+++.++|++||+++++.|+++++.+.
T Consensus 349 S~~~~~t~~di~~~~~~l~~~~~~~~ 374 (379)
T TIGR03402 349 SLSRYNTEEDIDYVLEVLPPIIARLR 374 (379)
T ss_pred EcCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999887754
No 223
>PRK02948 cysteine desulfurase; Provisional
Probab=99.79 E-value=1.2e-17 Score=141.99 Aligned_cols=216 Identities=18% Similarity=0.213 Sum_probs=145.9
Q ss_pred CChhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEE-
Q psy6548 10 KQVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVI- 87 (242)
Q Consensus 10 ~d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~- 87 (242)
.|+++ +...++++++|+++.++|++|.+.+ +++|.++|++||+++++|++|. ++.. +.....+ ..|+++
T Consensus 126 ~d~~~l~~~l~~~~~lv~~~~~~n~tG~~~~----~~~I~~l~~~~~~~vivD~~~~-~g~~--~~~~~~~--~~d~~~~ 196 (381)
T PRK02948 126 IRLVDLERAITPDTVLASIQHANSEIGTIQP----IAEIGALLKKYNVLFHSDCVQT-FGKL--PIDVFEM--GIDSLSV 196 (381)
T ss_pred CCHHHHHHhcCCCCEEEEEECCcCCcEeehh----HHHHHHHHHHcCCEEEEEChhh-cccc--ccCcccC--CCCEEEe
Confidence 35565 3333457889999999999998876 8899999999999999998875 4322 2222333 356666
Q ss_pred -eeccccCCccchheeEeChhh-hhccCCC---CCC-CCCCCCHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHH
Q psy6548 88 -LGKALSGGLYPISAVLADDEV-MGTLVPG---THG-STYGGNPLACKLAMTALDVILE--ENMIENAYKMGEIFRSELR 159 (242)
Q Consensus 88 -~sK~~~~g~~~~g~~~~~~~~-~~~l~~~---~~~-~~~~~~~~~~~~a~a~l~~~~~--~~~~~~~~~~~~~l~~~l~ 159 (242)
++|.+| + .++|+++.++++ +..+.+. ... ..++.+.+++.++.++++...+ ++..++++++++++++.|
T Consensus 197 s~~K~~g-p-~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~l~~~L- 273 (381)
T PRK02948 197 SAHKIYG-P-KGVGAVYINPQVRWKPVFPGTTHEKGFRPGTVNVPGIAAFLTAAENILKNMQEESLRFKELRSYFLEQI- 273 (381)
T ss_pred cHHhcCC-C-CcEEEEEEcCCCCCCCcccCCCCCCCcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 679877 2 347888777654 1111110 001 2335677788888888876532 456788888999999999
Q ss_pred hhcCCCCCCeE-e--eeceeEEEEecCCchhHHHHHHHHHHCCceeccCC-----------------------CCEEEEe
Q psy6548 160 SRLSPDIVPVV-R--GKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPIS-----------------------NNIIRLS 213 (242)
Q Consensus 160 ~~l~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~-----------------------~~~lR~~ 213 (242)
+.++..+.... . ....++.+.++. .+..++...|.++||.++.+. .+.+|++
T Consensus 274 ~~~~~~v~~~~~~~~~~~~i~~~~~~~--~~~~~~~~~l~~~gI~v~~g~~c~~~~~~p~~~~~~~~~~~~~~~~~lRis 351 (381)
T PRK02948 274 QTLPLPIEVEGHSTSCLPHIIGVTIKG--IEGQYTMLECNRRGIAISTGSACQVGKQEPSKTMLAIGKTYEEAKQFVRFS 351 (381)
T ss_pred hcCCCCEEEeCCCccCcCCEEEEEeCC--CCHHHHHHhcccCCEEEEchHhcCCCCCCCCHHHHHcCCChHHhCceEEEE
Confidence 66652111100 0 112234444443 246777888889999997532 3689999
Q ss_pred ccCcCCHHHHHHHHHHHHHHHHHHhh
Q psy6548 214 PALNITEQELREGLDIIINTINTMAA 239 (242)
Q Consensus 214 ~~~~~t~e~i~~~~~~l~~~l~~~~~ 239 (242)
++..+|++|++++++.|+++++.+.+
T Consensus 352 ~~~~~t~~di~~l~~~l~~~~~~~~~ 377 (381)
T PRK02948 352 FGQQTTKDQIDTTIHALETIGNQFYR 377 (381)
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999887654
No 224
>PRK08354 putative aminotransferase; Provisional
Probab=99.79 E-value=1e-17 Score=138.73 Aligned_cols=184 Identities=13% Similarity=0.101 Sum_probs=116.3
Q ss_pred EEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEE---Eeecccc-CCcc
Q psy6548 22 ICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIV---ILGKALS-GGLY 97 (242)
Q Consensus 22 ~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~---~~sK~~~-~g~~ 97 (242)
++.+++..++||+|. ..+.+.+++|+++|++||+++|+||+|.+|...+... . .+.++ +|||+|+ +| +
T Consensus 118 ~~~vi~~~P~NPTG~-~~~~~~l~~l~~~a~~~~~~li~De~y~~f~~~~~~~--~----~~~vi~~~S~SK~~~l~G-l 189 (311)
T PRK08354 118 NSVVFFCNPNNPDGK-FYNFKELKPLLDAVEDRNALLILDEAFIDFVKKPESP--E----GENIIKLRTFTKSYGLPG-I 189 (311)
T ss_pred CCEEEEecCCCCCCC-ccCHHHHHHHHHHhhhcCcEEEEeCcchhcccccccc--C----CCcEEEEeccHhhcCCcc-c
Confidence 345666666899995 5567889999999999999999999998874332211 1 22333 3899999 99 9
Q ss_pred chheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhhcCCCCCCeEeeeceeE
Q psy6548 98 PISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELRSRLSPDIVPVVRGKGLLN 177 (242)
Q Consensus 98 ~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~ 177 (242)
|+||+++. .+.++... ..+..+..+++++.+.++ +. .+++++..+.++... +.+..... .++.+.++
T Consensus 190 RiG~~v~~---~~~l~~~~--~~~~~~~~~~~~~~~~~~----~~-~~~~~~~~~~~~~~~-~~l~~~l~--~~~~~~~~ 256 (311)
T PRK08354 190 RVGYVKGF---EEAFRSVR--MPWSIGSTGYAFLEFLIE----DD-FEHLRKTMPLIWREK-ERFEKALY--VKSDANFF 256 (311)
T ss_pred eeeeeeeh---HHHHHHcC--CCccCCHHHHHHHHHHHH----hH-HHHHHHHHHHHHHHH-HHHHHhcC--CCCCCcEE
Confidence 99999883 33343322 233445555555444433 11 133334344444433 32221111 12344555
Q ss_pred EEEecCCchhHHHHHHHHHHCCceeccCC----CCEEEEeccCcCCHHHHHHHHHHHHHH
Q psy6548 178 AIVLDKSILEVYDVCIKMKDAGLVTKPIS----NNIIRLSPALNITEQELREGLDIIINT 233 (242)
Q Consensus 178 ~~~~~~~~~~~~~~~~~l~~~gi~~~~~~----~~~lR~~~~~~~t~e~i~~~~~~l~~~ 233 (242)
++.++ +..++++.|.++||.+.++. ++++|++ ..+.++.+++++.|+++
T Consensus 257 ~~~~~----~~~~~~~~l~~~gv~v~~g~~f~~~~~iRi~---~~~~~~~~~l~~al~~~ 309 (311)
T PRK08354 257 IKDVG----DAEKFVEFLKRNGILVRDCTSFGLPGYIRFS---VRDREENEKLIRALREW 309 (311)
T ss_pred EEECC----CHHHHHHHHHHCCeEEEecccCCCCCeEEEE---eCCHHHHHHHHHHHHHh
Confidence 56543 35779999999999999862 4799999 33667788888888764
No 225
>PLN02672 methionine S-methyltransferase
Probab=99.79 E-value=1e-17 Score=154.62 Aligned_cols=207 Identities=14% Similarity=0.176 Sum_probs=132.8
Q ss_pred EEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCccc---ccc----cC-CCCC--CEEE---e
Q psy6548 22 ICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLL---AIH----YE-DVRP--DIVI---L 88 (242)
Q Consensus 22 ~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~---~~~----~~-~~~~--~~~~---~ 88 (242)
..+++++|.+||+| .+++++.+++|+++|++||++||+||+|.++...+... ... .+ ...+ .+++ |
T Consensus 830 ~~I~L~nPnhNPTG-~v~S~eeLe~Llela~k~di~VIsDEaYsdL~Fd~~~~s~~sl~s~l~~~~~~sks~nVIvL~Sf 908 (1082)
T PLN02672 830 PWVYISGPTINPTG-LLYSNSEIEEILSVCAKYGARVIIDTSFSGLEYDTSGWGGWDLKSILSRLKSSNPSFAVALLGGL 908 (1082)
T ss_pred CEEEEECcCCCCcC-ccCCHHHHHHHHHHHHHcCCEEEEeCCCCccccCCCCCcccchhhHHHHhccccCCceEEEEeCc
Confidence 34555566569999 56688999999999999999999999998764433211 010 11 1101 2333 8
Q ss_pred ecccc-CCccchheeEeCh-hhhhccCCCCCCCC-CCCCHHHHHHHHHHHHH----HH--hccHHHHHHHHHHHHHHHHH
Q psy6548 89 GKALS-GGLYPISAVLADD-EVMGTLVPGTHGST-YGGNPLACKLAMTALDV----IL--EENMIENAYKMGEIFRSELR 159 (242)
Q Consensus 89 sK~~~-~g~~~~g~~~~~~-~~~~~l~~~~~~~~-~~~~~~~~~~a~a~l~~----~~--~~~~~~~~~~~~~~l~~~l~ 159 (242)
||.++ +| +|+||+++++ ++++.+........ +..+.+++.+++++++. +. -.+..+.++++++++.+.|
T Consensus 909 SKkf~lpG-LRIGylIap~~eLi~~l~~~~~~s~~~~~~q~Aaaaalall~~~~~~~~~~l~e~r~~Lk~rRd~L~e~L- 986 (1082)
T PLN02672 909 STELLSGG-HEFGFLALNDSVLIDAFHSAPGLSRPHSTLKYTIKKLLGLKNQKSSDLLDGVAEQKKILKSRAERLKETL- 986 (1082)
T ss_pred HHhhccHH-HHheeEEeCCHHHHHHHHHhhhhcCCCcHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 99988 89 9999999864 47777765311111 11223333333332210 00 1234455777788888888
Q ss_pred hhcCCCCCCeEeeeceeEEEEecC----------C------chhHHHHHHHHHHC-CceeccC----CCCEEEEeccCcC
Q psy6548 160 SRLSPDIVPVVRGKGLLNAIVLDK----------S------ILEVYDVCIKMKDA-GLVTKPI----SNNIIRLSPALNI 218 (242)
Q Consensus 160 ~~l~~~~~~~~~~~~~~~~~~~~~----------~------~~~~~~~~~~l~~~-gi~~~~~----~~~~lR~~~~~~~ 218 (242)
+..+ +....+..|+++|+.++. . ..+..+++++|+++ ||.+.|+ .++++|++ +..
T Consensus 987 ~~~G--i~v~~PeGGFfLwl~l~~~l~~~~~~~~~~~~~~~~lds~efae~LLee~GVaV~PGs~FG~~g~~RIs--fa~ 1062 (1082)
T PLN02672 987 EACG--WDVLEPQGGISMVAKPSAYLGKTVKLKSIDGDTGIKLDSSNIREAILKSTGLCINSSSWTGIPGYCRFS--FAL 1062 (1082)
T ss_pred HHCC--CeEecCCcEEEEEEEccccccccccccccccccccCCCHHHHHHHHHHcCCEEEecCcccCCCCeEEEE--ecC
Confidence 5543 222234467888886531 0 12567899999876 9999986 35799999 456
Q ss_pred CHHHHHHHHHHHHHHHH
Q psy6548 219 TEQELREGLDIIINTIN 235 (242)
Q Consensus 219 t~e~i~~~~~~l~~~l~ 235 (242)
+++++++++++|++..+
T Consensus 1063 ~~e~LeeALerL~kf~~ 1079 (1082)
T PLN02672 1063 EDSEFDRALKAIARFKE 1079 (1082)
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 88899999999988654
No 226
>PRK10534 L-threonine aldolase; Provisional
Probab=99.79 E-value=3.7e-18 Score=142.63 Aligned_cols=197 Identities=13% Similarity=0.178 Sum_probs=131.5
Q ss_pred CEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCcc---CcccccccCCCCCC-EEEeeccccCCc
Q psy6548 21 NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRT---GKLLAIHYEDVRPD-IVILGKALSGGL 96 (242)
Q Consensus 21 ~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~---g~~~~~~~~~~~~~-~~~~sK~~~~g~ 96 (242)
++++|++++++ +|.+. +.+.++++.++|++|++++++||+|. |+.. +.... ......+. +++|||+++
T Consensus 129 ~~~lv~l~np~--~G~v~-~~~~l~~i~~~~~~~~~~lvvDEA~~-~~~~~~~~~~~~-~~~~~~~~~~~s~SK~~~--- 200 (333)
T PRK10534 129 RTRLLSLENTH--NGKVL-PREYLKQAWEFTRERNLALHVDGARI-FNAVVAYGCELK-EITQYCDSFTICLSKGLG--- 200 (333)
T ss_pred cceEEEEecCC--CCeec-CHHHHHHHHHHHHHcCCeEEeeHHHH-HHHHHHcCCCHH-HHHhcCCEEEEEeEcCCC---
Confidence 57888888644 47544 56789999999999999999999986 3211 11110 00011111 345999888
Q ss_pred cchh-eeEeChhhhhccCCCCCCCC--CCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhhcCCCCCCeEeee
Q psy6548 97 YPIS-AVLADDEVMGTLVPGTHGST--YGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELRSRLSPDIVPVVRGK 173 (242)
Q Consensus 97 ~~~g-~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~ 173 (242)
.++| |+++++++++.++.....+. ++.+.++++++.++++.. .+..+..++.++++.+.| ++++-.+ .++.
T Consensus 201 ~~~G~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~a~~~~~l~~~--~~~~~~~~~~r~~l~~~L-~~~g~~~---~~~~ 274 (333)
T PRK10534 201 TPVGSLLVGNRDYIKRARRWRKMTGGGMRQAGILAAAGLYALKHN--VARLQEDHDNAAWLAEQL-REAGADV---MRQD 274 (333)
T ss_pred CcccceEEcCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHhh--HHHHHHHHHHHHHHHHHH-HhCCCcc---CCCC
Confidence 4567 57789999888875332221 222345555566565532 223444556678888888 6654211 2235
Q ss_pred ceeEEEEecCCchhHHHHHHHHHHCCceeccCCCCEEEEeccCcCCHHHHHHHHHHHHHHHH
Q psy6548 174 GLLNAIVLDKSILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTIN 235 (242)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~ 235 (242)
++++++.++. .+..++.+.|.++||.++++ ..+|++.+..+|+|++++++++|++.+.
T Consensus 275 ~nfv~~~~~~--~~~~~~~~~l~~~gi~v~~~--~~~rl~~~~r~t~e~~~~~~~~l~~~~~ 332 (333)
T PRK10534 275 TNMLFVRVGE--EQAAALGEYMRERNVLINAS--PIVRLVTHLDVSREQLAEVVAHWRAFLA 332 (333)
T ss_pred ceEEEEECCc--hhHHHHHHHHHHcCeeecCC--ceEEEEEEeCCCHHHHHHHHHHHHHHhc
Confidence 7888888864 25678899999999999886 3589987667899999999999987653
No 227
>TIGR03403 nifS_epsilon cysteine desulfurase, NifS family, epsilon proteobacteria type. Members of this family are the NifS-like cysteine desulfurase of the epsilon division of the Proteobacteria, similar to the NifS protein of nitrogen-fixing bacteria. Like NifS, and unlike IscS, this protein is found as part of a system of just two proteins, a cysteine desulfurase and a scaffold, for iron-sulfur cluster biosynthesis. This protein is called NifS by Olsen, et al. (PubMed:11123951), so we use this designation.
Probab=99.78 E-value=3.2e-17 Score=139.50 Aligned_cols=213 Identities=18% Similarity=0.203 Sum_probs=142.6
Q ss_pred Chhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEEee
Q psy6548 11 QVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILG 89 (242)
Q Consensus 11 d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~s 89 (242)
|+++ +...++++++++++.++|++|.+.+ +++|.++|++||+++++|++|. ++.. +.... ....|++++|
T Consensus 129 d~~~l~~~i~~~t~lv~~~~~~n~tG~~~~----~~~I~~la~~~g~~~ivD~a~~-~g~~--~~~~~--~~~~D~~~~s 199 (382)
T TIGR03403 129 TAEQVREAITEKTALVSVMWANNETGMIFP----IKEIGEICKERGVLFHTDAVQA-IGKI--PVDVQ--KAGVDFLSFS 199 (382)
T ss_pred CHHHHHHhcccCCeEEEEEcccCCCccccC----HHHHHHHHHHcCCEEEEechhh-cCCC--ccCcc--ccCCCEEEEc
Confidence 4555 4444567899999999999998877 8899999999999999999985 2211 12222 3346788766
Q ss_pred --ccccCCccchheeEeChhhhhccCCCCC-------CCCCCCCHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHH
Q psy6548 90 --KALSGGLYPISAVLADDEVMGTLVPGTH-------GSTYGGNPLACKLAMTALDVILE--ENMIENAYKMGEIFRSEL 158 (242)
Q Consensus 90 --K~~~~g~~~~g~~~~~~~~~~~l~~~~~-------~~~~~~~~~~~~~a~a~l~~~~~--~~~~~~~~~~~~~l~~~l 158 (242)
|.+| + .++|+++.++.. .+.+... ...++.+..++.++.++++...+ +...++.+++++++++.|
T Consensus 200 ~~K~~g-p-~G~g~l~vr~~~--~~~p~~~g~~~~~~~~~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~L 275 (382)
T TIGR03403 200 AHKFHG-P-KGVGGLYIRKGV--ELTPLFHGGEHMGGRRSGTLNVPYIVAMGEAMRLANEYLDFEKSHVRRLRDRLEDAL 275 (382)
T ss_pred chhhCC-C-CceEEEEECCCC--CCCCcccCCCCCCCcccCCcChHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 9765 2 346777665443 1222111 11234566666666677775543 334577778888888888
Q ss_pred HhhcCCC-CCCeE-eeeceeEEEEecCCchhHHHHHHHHHHCCceeccCC-----------------------CCEEEEe
Q psy6548 159 RSRLSPD-IVPVV-RGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPIS-----------------------NNIIRLS 213 (242)
Q Consensus 159 ~~~l~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~-----------------------~~~lR~~ 213 (242)
++++.. +.... .....++.+.++. .+..++..+|.++||.++.+. .+.+|++
T Consensus 276 -~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~L~~~gI~v~~g~~c~~~~~~~~~v~~~~g~~~~~~~~~iR~s 352 (382)
T TIGR03403 276 -LELPDVFVVGDREHRVPNTILISIKG--VEGEAMLWDLNKAGIAASTGSACASEDLEANPVMVAIGADKELAHTAIRLS 352 (382)
T ss_pred -hcCCCEEEECCCCCCcCCEEEEEeCC--CCHHHHHHhhccCCEEEEchhccCCCCCCcCHHHHHcCCChHHhCeeEEEE
Confidence 655421 11111 1113355666654 357788888999999998421 2579999
Q ss_pred ccCcCCHHHHHHHHHHHHHHHHHHhh
Q psy6548 214 PALNITEQELREGLDIIINTINTMAA 239 (242)
Q Consensus 214 ~~~~~t~e~i~~~~~~l~~~l~~~~~ 239 (242)
++.++|++|++++++.|+++++++..
T Consensus 353 ~~~~~t~~did~~~~~l~~~~~~~~~ 378 (382)
T TIGR03403 353 LSRFTTEEEIDYTIEVFKKAVQRLRA 378 (382)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999887653
No 228
>PRK09257 aromatic amino acid aminotransferase; Provisional
Probab=99.78 E-value=4e-18 Score=145.66 Aligned_cols=201 Identities=15% Similarity=0.158 Sum_probs=128.6
Q ss_pred CCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCcc-Cc-cccccc-CCCCCCEE---Eeecccc
Q psy6548 20 PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRT-GK-LLAIHY-EDVRPDIV---ILGKALS 93 (242)
Q Consensus 20 ~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~-g~-~~~~~~-~~~~~~~~---~~sK~~~ 93 (242)
.++.++++.++|||+|. +.+++.+++|+++|++||+++|+||+|.+|... +. ...... .+...+++ +|||.++
T Consensus 171 ~~~~~~i~~~p~NPTG~-~~s~~~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~vi~i~SfSK~~~ 249 (396)
T PRK09257 171 AGDVVLLHGCCHNPTGA-DLTPEQWDELAELLKERGLIPFLDIAYQGFGDGLEEDAYGLRAFAAAGLELLVASSFSKNFG 249 (396)
T ss_pred CCCEEEEeCCCCCCCCC-CCCHHHHHHHHHHHHhCCcEEEEeccccccccchHHHHHHHHHHHhcCCcEEEEEEcCCcCc
Confidence 34667777889999995 567889999999999999999999999887532 11 111111 11122333 3999999
Q ss_pred -CCccchheeEe---Chh----hhhccCCCCCCCCCCCCHHHHHHHHHHHHHH------Hh--ccHHHHHHHHHHHHHHH
Q psy6548 94 -GGLYPISAVLA---DDE----VMGTLVPGTHGSTYGGNPLACKLAMTALDVI------LE--ENMIENAYKMGEIFRSE 157 (242)
Q Consensus 94 -~g~~~~g~~~~---~~~----~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~------~~--~~~~~~~~~~~~~l~~~ 157 (242)
+| +|+||+++ +++ ++..+.........+.+.+.+.++.+.++.. .. ++..+.++++++.+.+.
T Consensus 250 ~~G-lRiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~~~~rr~~l~~~ 328 (396)
T PRK09257 250 LYG-ERVGALSVVAEDAEEADRVLSQLKATIRTNYSNPPAHGAAIVATILNDPELRAEWEAELEEMRERIKAMRQLLVEA 328 (396)
T ss_pred ccc-ccceeEEEEeCCHHHHHHHHHHHHHHhhhhcCCCcHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 69 99999873 333 3333322212222234566665555554421 11 23566777788888888
Q ss_pred HHhhcCC--CCCCeEeeeceeEEEEecCCchhHHHHHHHHHHCCceeccCCCCEEEEeccCcCCHHHHHHHHHHHHHH
Q psy6548 158 LRSRLSP--DIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINT 233 (242)
Q Consensus 158 l~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~lR~~~~~~~t~e~i~~~~~~l~~~ 233 (242)
| +.... ......+..|+++|+.++. +.+.+.+.++||.+.|.+ |++++. .+++++++++++|.++
T Consensus 329 L-~~~~~~~~~~~~~p~gg~~~w~~l~~-----~~~~~l~~~~~V~~~p~~----ri~~~~-~~~~~i~~~~~~i~~~ 395 (396)
T PRK09257 329 L-KAKGPSRDFDFIARQRGMFSYSGLTP-----EQVDRLREEFGVYAVGSG----RINVAG-LNESNIDYVAEAIAAV 395 (396)
T ss_pred H-HhcCCCCCcccccccceEEEecCCCH-----HHHHHHHHcCCEEEcCCC----eEEEee-CCHHHHHHHHHHHHhh
Confidence 8 55432 1222345568899987643 233444467799998752 888543 6899999999999875
No 229
>PRK13520 L-tyrosine decarboxylase; Provisional
Probab=99.78 E-value=2.2e-17 Score=139.90 Aligned_cols=211 Identities=14% Similarity=0.137 Sum_probs=138.0
Q ss_pred Chhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCc-c-Ccc--cccccCCCCCCE
Q psy6548 11 QVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGR-T-GKL--LAIHYEDVRPDI 85 (242)
Q Consensus 11 d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~-~-g~~--~~~~~~~~~~~~ 85 (242)
|+++ +...+++++++++..+.+++|.+.| +++|.++|++||+++++|++|+++.. . ... +.... ...|.
T Consensus 140 d~~~l~~~i~~~~~~vi~~~~~~~tG~~~~----l~~I~~l~~~~g~~livD~a~~~~~~~~~~~~~~~~~~~--~~vd~ 213 (371)
T PRK13520 140 DVKAVEDLIDDNTIGIVGIAGTTELGQVDP----IPELSKIALENGIFLHVDAAFGGFVIPFLDDPPNFDFSL--PGVDS 213 (371)
T ss_pred CHHHHHHHHhhCCEEEEEEcCCcCCcccCC----HHHHHHHHHHcCCCEEEEecchhHHHHhhcCCCCccccC--CCCce
Confidence 5666 4433445666665556678887776 99999999999999999999975421 1 111 11111 13455
Q ss_pred EEe--eccccCCccchheeEe-ChhhhhccCCCC---CCC-----CCCCCHHHHHHHHHHHHHHHhc---cHHHHHHHHH
Q psy6548 86 VIL--GKALSGGLYPISAVLA-DDEVMGTLVPGT---HGS-----TYGGNPLACKLAMTALDVILEE---NMIENAYKMG 151 (242)
Q Consensus 86 ~~~--sK~~~~g~~~~g~~~~-~~~~~~~l~~~~---~~~-----~~~~~~~~~~~a~a~l~~~~~~---~~~~~~~~~~ 151 (242)
+++ .|+..+| .++|+++. ++++++.+.... .+. ..+.+...+.++.++++.+..+ +..++..+++
T Consensus 214 ~~~s~~K~~~a~-~~~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~gt~~~~~~~~~~~al~~l~~~g~~~~~~~~~~~~ 292 (371)
T PRK13520 214 ITIDPHKMGLAP-IPAGGILFRDESYLDALAVDTPYLTSKKQATLTGTRSGAGVAATYAVMKYLGREGYRKVVERCMENT 292 (371)
T ss_pred EEECCccccCcc-CCceEEEEcCHHHHHhhcccCccccCCCCcceEeeccChHHHHHHHHHhhhcHhHHHHHHHHHHHHH
Confidence 553 3765567 78887775 555666553210 000 0112334566667777765443 3677888888
Q ss_pred HHHHHHHHhhcCCCCCCeEeeeceeEEEEecCCchhHHHHHHHHHHCCceeccCC-CCEEEEeccCcCCHHHHHHHHHHH
Q psy6548 152 EIFRSELRSRLSPDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPIS-NNIIRLSPALNITEQELREGLDII 230 (242)
Q Consensus 152 ~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~-~~~lR~~~~~~~t~e~i~~~~~~l 230 (242)
+++++.| +.++-. ........++.+.++ +.+++.++|.++||.++.+. .+.+|++++..+|++|++++++.|
T Consensus 293 ~~l~~~L-~~~g~~--~~~~~~~~~v~~~~~----~~~~v~~~L~~~gi~v~~~~~~~~iRis~~~~~t~edi~~~~~~l 365 (371)
T PRK13520 293 RWLAEEL-KERGFE--PVIEPVLNIVAFDDP----NPDEVREKLRERGWRVSVTRCPEALRIVCMPHVTREHIENFLEDL 365 (371)
T ss_pred HHHHHHH-HhCCCE--EecCCCceEEEEecC----CHHHHHHHHHHCCceeccCCCCCEEEEEEECCCCHHHHHHHHHHH
Confidence 9999988 555311 011223446666654 36789999999999998764 568999988889999999999999
Q ss_pred HHHHH
Q psy6548 231 INTIN 235 (242)
Q Consensus 231 ~~~l~ 235 (242)
+++++
T Consensus 366 ~~~~~ 370 (371)
T PRK13520 366 KEVKK 370 (371)
T ss_pred HHHhh
Confidence 88764
No 230
>PLN02409 serine--glyoxylate aminotransaminase
Probab=99.78 E-value=3.1e-17 Score=140.32 Aligned_cols=207 Identities=20% Similarity=0.208 Sum_probs=150.0
Q ss_pred CCEEEEEEcccccCCCcccCCHHHHHHHHHH--HHhhCCEEEEeccccccCccCcccccccCCCCCCEEE--eeccccCC
Q psy6548 20 PNICAFMVEPIQGEAGAVVPDDGYLKKVRAL--CSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVI--LGKALSGG 95 (242)
Q Consensus 20 ~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l--~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~--~sK~~~~g 95 (242)
++++++++.++.+++|.+.| +++|.++ |++||+++++|++++ ++. .+..++.+ ..|+++ .+|+|+++
T Consensus 136 ~~~k~v~~~~~~~~tG~~~~----~~~i~~l~~~~~~g~~~vvD~v~s-~g~--~~id~~~~--~~D~~~~s~~K~l~~P 206 (401)
T PLN02409 136 HKIKAVCVVHNETSTGVTND----LAGVRKLLDCAQHPALLLVDGVSS-IGA--LDFRMDEW--GVDVALTGSQKALSLP 206 (401)
T ss_pred CCccEEEEEeecccccccCC----HHHHHHHHhhhccCcEEEEEcccc-cCC--cccccccc--CccEEEEcCccccCcC
Confidence 47999999999999997776 7778888 999999999999986 321 12222333 456666 56999977
Q ss_pred ccchheeEeChhhhhccCCCCC---------------CC---CCCCCHHHHHHHHHHHHHHHh---ccHHHHHHHHHHHH
Q psy6548 96 LYPISAVLADDEVMGTLVPGTH---------------GS---TYGGNPLACKLAMTALDVILE---ENMIENAYKMGEIF 154 (242)
Q Consensus 96 ~~~~g~~~~~~~~~~~l~~~~~---------------~~---~~~~~~~~~~~a~a~l~~~~~---~~~~~~~~~~~~~l 154 (242)
.++|+++.++++++.+.+... .. .++.+...+.+..++++.+.+ +++.++.+++++++
T Consensus 207 -~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~Tp~~~~~~al~~al~~~~~~G~e~i~~~~~~l~~~l 285 (401)
T PLN02409 207 -TGLGIVCASPKALEASKTAKSPRVFFDWADYLKFYKLGTYWPYTPSIQLLYGLRAALDLIFEEGLENVIARHARLGEAT 285 (401)
T ss_pred -CCcceeEECHHHHHHHhcCCCCCeecCHHHHHHHHhcCCCCCCCccHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 789999999988887654210 01 224455566777778887654 35678888899999
Q ss_pred HHHHHhhcCCCCCCe-Ee-eeceeEEEEecCCchhHHHHHHHHH-HCCceeccC----CCCEEEEeccCcCCHHHHHHHH
Q psy6548 155 RSELRSRLSPDIVPV-VR-GKGLLNAIVLDKSILEVYDVCIKMK-DAGLVTKPI----SNNIIRLSPALNITEQELREGL 227 (242)
Q Consensus 155 ~~~l~~~l~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~l~-~~gi~~~~~----~~~~lR~~~~~~~t~e~i~~~~ 227 (242)
++.| +.++-..... .. ....+.++.++.. .+..++.+.|. +.||.+..+ .++.+|++...+++.+++..++
T Consensus 286 ~~~L-~~~g~~~~~~~~~~~s~~v~~~~~p~~-~~~~~l~~~l~~~~~i~i~~G~~~~~~~~~Rig~~g~~~~~~~~~~~ 363 (401)
T PLN02409 286 RLAV-EAWGLKLCTKKPEWRSDTVTAVVVPEG-IDSAEIVKNAWKKYNLSLGLGLNKVAGKVFRIGHLGNVNELQLLGAL 363 (401)
T ss_pred HHHH-HHcCCeeccCChhhcccceEEEeCCCC-CCHHHHHHHHHHhCCEEEEcCCCcccCCEEEEcCCCCCCHHHHHHHH
Confidence 9999 6665322221 11 1334566777654 56778887775 569999865 3578999998899999999999
Q ss_pred HHHHHHHHHHh
Q psy6548 228 DIIINTINTMA 238 (242)
Q Consensus 228 ~~l~~~l~~~~ 238 (242)
+.|+++++++.
T Consensus 364 ~~~~~~l~~~g 374 (401)
T PLN02409 364 AGVEMVLKDVG 374 (401)
T ss_pred HHHHHHHHHcC
Confidence 99999998753
No 231
>PRK09331 Sep-tRNA:Cys-tRNA synthetase; Provisional
Probab=99.78 E-value=1.8e-17 Score=141.11 Aligned_cols=207 Identities=12% Similarity=0.102 Sum_probs=134.1
Q ss_pred CCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEE--eeccccCCcc
Q psy6548 20 PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVI--LGKALSGGLY 97 (242)
Q Consensus 20 ~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~--~sK~~~~g~~ 97 (242)
+++++|+++++++++|...+ +++|+++|++||+++++|++|+ +|..+ .....++ .|+++ ++|+++++ .
T Consensus 157 ~~~~lV~l~~~~~~tG~~~~----l~~I~~la~~~g~~livD~a~~-~g~~~--~~~~~~g--~D~~~~s~~K~l~~~-~ 226 (387)
T PRK09331 157 KPPALALLTHVDGNYGNLAD----AKKVAKVAHEYGIPFLLNGAYT-VGRMP--VDGKKLG--ADFIVGSGHKSMAAS-A 226 (387)
T ss_pred CCCEEEEEECCCCCCccccc----HHHHHHHHHHcCCEEEEECCcc-cCCcC--CCHHHcC--CCEEEeeCcccccCC-C
Confidence 37899999999999997766 9999999999999999999996 22111 2222333 45555 77999977 7
Q ss_pred chheeEeChhhhhccCCCCCCCC------C--CCCHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHhhcC-CCCC
Q psy6548 98 PISAVLADDEVMGTLVPGTHGST------Y--GGNPLACKLAMTALDVILE-ENMIENAYKMGEIFRSELRSRLS-PDIV 167 (242)
Q Consensus 98 ~~g~~~~~~~~~~~l~~~~~~~~------~--~~~~~~~~~a~a~l~~~~~-~~~~~~~~~~~~~l~~~l~~~l~-~~~~ 167 (242)
++|++.+++++++.+........ + +.++....+++++++.+.. .+..++..++.+++++.| +.++ -...
T Consensus 227 ~~G~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aal~~~~~~~~~~~~~~~~~~~l~~~L-~~l~g~~~~ 305 (387)
T PRK09331 227 PSGVLATTEEYADKVFRTSRKFGVKEVELLGCTLRGAPLVTLMASFPHVVERVKRWDEEVKKARWFVDEL-EKIEGFKQL 305 (387)
T ss_pred CEEEEEECHHHHhhcccccCCCcccceeeeceecCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCCCEEEe
Confidence 89999999998887755321110 1 1122233334455554432 223445566777888888 6663 1111
Q ss_pred CeEeeeceeEEEEecCC-------chhHHHHHHHHHHCCceeccCCCCEEEEeccCcCCHHHHHHHHHHHHHHHHHH
Q psy6548 168 PVVRGKGLLNAIVLDKS-------ILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINTM 237 (242)
Q Consensus 168 ~~~~~~~~~~~~~~~~~-------~~~~~~~~~~l~~~gi~~~~~~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~ 237 (242)
........++.++.+.- .....++.+.|.++||...+.+.+.+|...+..+++++++++++.|+++++++
T Consensus 306 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gI~~~~~~~~~i~ri~~~g~t~~di~~l~~aL~~i~~~~ 382 (387)
T PRK09331 306 GEKPRNHDLMKFETPSFDEIAKKHKRRGFFLYEELKKRGIHGIKPGATKEFKLSTYGLTWEQVEYVADAFKEIAEKY 382 (387)
T ss_pred ccCcCcCCeEEEeCCchhHHhhhccccchhHHHHHHHcCceEEccCCceEEEEEeccCCHHHHHHHHHHHHHHHHhc
Confidence 11122344555554421 02235699999999998544445555554455689999999999999988764
No 232
>KOG0634|consensus
Probab=99.78 E-value=4.6e-17 Score=133.68 Aligned_cols=216 Identities=17% Similarity=0.147 Sum_probs=151.0
Q ss_pred CCEEEEEEcc-cccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCcc---Cc------ccc--------cc---c
Q psy6548 20 PNICAFMVEP-IQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRT---GK------LLA--------IH---Y 78 (242)
Q Consensus 20 ~~~~~i~~e~-~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~---g~------~~~--------~~---~ 78 (242)
.+.....+-| .||++|. ..+.+.-++|.+||++|+.+||.||.|--+... +. ... .+ .
T Consensus 202 ~~p~vlYTIPTgqNPTG~-tls~errk~iy~LArKyDfLIVeDdpYy~Lq~~~y~~~~~~~~p~~s~~~f~k~l~~sfls 280 (472)
T KOG0634|consen 202 PKPHVLYTIPTGQNPTGN-TLSLERRKKIYQLARKYDFLIVEDDPYYFLQMNTYNPSLELESPAHSSSMFLKSLVPSFLS 280 (472)
T ss_pred CCCeEEEeCcCCCCCCCC-ccCHHHHHHHHHHHHHcCEEEEecCccceeeccccCCCccccCccccHHHHHHhhcCCccc
Confidence 4567777777 5889995 456688999999999999999999999533211 10 000 00 0
Q ss_pred CCCCCCEE---EeeccccCCccchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHhccHH-------HHHH
Q psy6548 79 EDVRPDIV---ILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMI-------ENAY 148 (242)
Q Consensus 79 ~~~~~~~~---~~sK~~~~g~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~~~~~-------~~~~ 148 (242)
.+...+++ +|||-++.| +|+||+.+++-+++++.......|.+.+.+.+...-+.++.+-++++. ....
T Consensus 281 lDtdGrVIr~dSFSKiiaPG-lRlG~it~~~~~l~ril~~ae~~t~~pSg~sq~iv~a~l~~wgqeG~~~wi~~l~~~Yt 359 (472)
T KOG0634|consen 281 LDTDGRVIRNDSFSKIIAPG-LRLGWITGNSLFLKRILDLAEVATSGPSGFSQGIVYAMLKRWGQEGFLRWIQHLRSSYT 359 (472)
T ss_pred ccccccEEeccchhhhhcCc-ceeEEeecCHHHHHHHhhhcceeecCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11122333 399999999 999999999988887776555556666667666666666665554333 3333
Q ss_pred HHHHHHHHHHHhhcCCC-CCCeEeeeceeEEEEec-------CCch-hHHHHHHHHHHCCceeccC----------CCC-
Q psy6548 149 KMGEIFRSELRSRLSPD-IVPVVRGKGLLNAIVLD-------KSIL-EVYDVCIKMKDAGLVTKPI----------SNN- 208 (242)
Q Consensus 149 ~~~~~l~~~l~~~l~~~-~~~~~~~~~~~~~~~~~-------~~~~-~~~~~~~~l~~~gi~~~~~----------~~~- 208 (242)
.+++.+...|.+-++.. +...++..|+++|++++ .... ..+.+...+.++||.+.++ +.+
T Consensus 360 ~Rrn~~l~Al~kylp~~~~~~~~P~aGmFiwv~i~~~~~~~~~~i~q~~e~i~~~~vk~gV~~v~G~~F~v~p~~s~~ki 439 (472)
T KOG0634|consen 360 ERRNALLSALDKYLPKSVCEYHPPKAGMFIWVEIPYINFDTKKSINQIEEIIFIKAVKNGVKLVCGSWFMVDPESSWSKI 439 (472)
T ss_pred HHHHHHHHHHHHhCCCCeeEEecCCcceEEEEEecccccccccchHHHHHHHHHHHHHCCeEEecCceeEEcCccCCCcc
Confidence 46666667776667654 55667788999999997 3311 2344666777899999765 133
Q ss_pred EEEEeccCcCCHHHHHHHHHHHHHHHHHHh
Q psy6548 209 IIRLSPALNITEQELREGLDIIINTINTMA 238 (242)
Q Consensus 209 ~lR~~~~~~~t~e~i~~~~~~l~~~l~~~~ 238 (242)
++|++.++. +.|+++++++++..++++.-
T Consensus 440 ffRls~a~a-~~e~l~~g~~rf~~~ike~f 468 (472)
T KOG0634|consen 440 FFRLSIAFA-EPEKLDEGIERFGSVIKEHF 468 (472)
T ss_pred eEEEEeecC-CHHHHHHHHHHHHHHHHHHh
Confidence 999998877 77899999999999998753
No 233
>PRK13479 2-aminoethylphosphonate--pyruvate transaminase; Provisional
Probab=99.78 E-value=9.2e-17 Score=136.01 Aligned_cols=216 Identities=13% Similarity=0.145 Sum_probs=147.0
Q ss_pred Chhh--hcCC-CCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEE
Q psy6548 11 QVPA--KLKS-NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVI 87 (242)
Q Consensus 11 d~~~--~~~~-~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~ 87 (242)
|+++ +.+. +.+++++++..+++++|...| +++|.++|++||+++|+|++|. ++.. +..... ..+|+++
T Consensus 118 d~~~l~~~l~~~~~~~~v~~~~~~~~tG~~~~----~~~i~~l~~~~~~~livDa~~~-~g~~--~~~~~~--~~~d~~v 188 (368)
T PRK13479 118 DAAEVEAALAADPRITHVALVHCETTTGILNP----LDEIAAVAKRHGKRLIVDAMSS-FGAI--PIDIAE--LGIDALI 188 (368)
T ss_pred CHHHHHHHHHhCCCCcEEEEEcccCccccccC----HHHHHHHHHHcCCEEEEEcccc-cCCc--cccccc--cCceEEE
Confidence 4555 3333 345778888889999998776 8899999999999999997764 4322 222222 3456666
Q ss_pred --eeccccCCccchheeEeChhhhhccCCCCC-----------------CCCCCCCHHHHHHHHHHHHHHHh----ccHH
Q psy6548 88 --LGKALSGGLYPISAVLADDEVMGTLVPGTH-----------------GSTYGGNPLACKLAMTALDVILE----ENMI 144 (242)
Q Consensus 88 --~sK~~~~g~~~~g~~~~~~~~~~~l~~~~~-----------------~~~~~~~~~~~~~a~a~l~~~~~----~~~~ 144 (242)
++|++.|+ .++||+++++++++.+..... ...++.+...+.+..++++.+.+ ++..
T Consensus 189 ~s~~K~l~g~-~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~l~~al~~l~~~~~~~~~~ 267 (368)
T PRK13479 189 SSANKCIEGV-PGFGFVIARRSELEACKGNSRSLSLDLYDQWAYMEKTGQWRFTPPTHVVAAFYQALLELEEEGGVPARG 267 (368)
T ss_pred ecCccccccC-CCceEEEECHHHHHHhhcCCCCeeecHHHHHhhhcccCCCCCCCcHHHHHHHHHHHHHHHHhhCHHHHH
Confidence 66998766 668999999988877665321 11134555666666677776543 2455
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCCeEe-eeceeEEEEecCCc-hhHHHHHHHHHHCCceeccCC---CCEEEEeccCcCC
Q psy6548 145 ENAYKMGEIFRSELRSRLSPDIVPVVR-GKGLLNAIVLDKSI-LEVYDVCIKMKDAGLVTKPIS---NNIIRLSPALNIT 219 (242)
Q Consensus 145 ~~~~~~~~~l~~~l~~~l~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~l~~~gi~~~~~~---~~~lR~~~~~~~t 219 (242)
++++++++++++.| +.++........ .......+.++... .+..++.++|.++||.++++. .+.+|++...+++
T Consensus 268 ~~~~~~~~~l~~~L-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~gi~v~~g~~~~~~~iRis~~~~~t 346 (368)
T PRK13479 268 ARYANNQRTLVAGM-RALGFEPLLDAEIQSPIIVTFHAPADPAYDFKEFYERLKEQGFVIYPGKLTQVDTFRIGCIGDVD 346 (368)
T ss_pred HHHHHHHHHHHHHH-HHcCCcccCCchhcCceEEEEECCCCCCcCHHHHHHHHHHCCEEEecCCCCCCCEEEEecCCCCC
Confidence 77788888888888 666532211111 11122334433321 356789999999999998753 3589999767789
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy6548 220 EQELREGLDIIINTINTM 237 (242)
Q Consensus 220 ~e~i~~~~~~l~~~l~~~ 237 (242)
++|++++++.|+++++++
T Consensus 347 ~edi~~~l~~L~~~l~~~ 364 (368)
T PRK13479 347 AADIRRLVAAIAEALYWM 364 (368)
T ss_pred HHHHHHHHHHHHHHHHHc
Confidence 999999999999998865
No 234
>PRK03967 histidinol-phosphate aminotransferase; Provisional
Probab=99.77 E-value=8.3e-18 Score=140.71 Aligned_cols=188 Identities=19% Similarity=0.231 Sum_probs=126.4
Q ss_pred CCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEE---eecccc-CC
Q psy6548 20 PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVI---LGKALS-GG 95 (242)
Q Consensus 20 ~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~---~sK~~~-~g 95 (242)
.+++++++..++|++|.+.+ .+++.+++ ++++++|+||+|.+|... ... ......+++++ |||.|+ +|
T Consensus 139 ~~~~~v~~~~P~NPtG~~~~----~~~l~~i~-~~~~~ii~De~y~~~~~~--~~~-~~~~~~~~vi~l~S~SK~~~l~G 210 (337)
T PRK03967 139 KNASAVFICSPNNPTGNLQP----EEEILKVL-ETGKPVVLDEAYAEFSGK--SLI-GLIDEYPNLILLRTFSKAFGLAG 210 (337)
T ss_pred cCCCEEEEeCCCCCCCCCCC----HHHHHHHH-hcCCEEEEECchhhhccc--chH-HHHhhCCCEEEEecchHhhcchh
Confidence 45667777888999997665 45556666 479999999999877421 111 11111234443 899999 99
Q ss_pred ccchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHhhcCCCCCCeEeeec
Q psy6548 96 LYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILE-ENMIENAYKMGEIFRSELRSRLSPDIVPVVRGKG 174 (242)
Q Consensus 96 ~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~-~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~ 174 (242)
+|+||+++++++++.+.... ..++.+.+++.++.++++..+. .+..+...+.++.+.+.| ... ..++.+
T Consensus 211 -lRiG~iv~~~~~i~~~~~~~--~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L-~~~------~~~~~~ 280 (337)
T PRK03967 211 -IRAGYAIANEEIIDALYRIK--PPFSLNILTMKIVRLALDHYDLIEERIDYIIKERERVRREL-GEY------AYPSDA 280 (337)
T ss_pred -hhheeeecCHHHHHHHHhhc--CCCCCCHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHh-ccC------cCCCCC
Confidence 99999999999988887632 3456677888887766653211 122334445555555555 322 124567
Q ss_pred eeEEEEecCCchhHHHHHHHHHHCCceeccC---CCCEEEEeccCcCCHHHHHHHHHHHHHHHHH
Q psy6548 175 LLNAIVLDKSILEVYDVCIKMKDAGLVTKPI---SNNIIRLSPALNITEQELREGLDIIINTINT 236 (242)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~---~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~ 236 (242)
+++|+.++ +.+.|.++||.+++. ..+++|++ ..+.++.+++++.|+++...
T Consensus 281 ~~~~~~~~--------~~~~l~~~gi~v~~~~~~~~~~~Ri~---~~~~~~~~~l~~~l~~~~~~ 334 (337)
T PRK03967 281 NFLLLKLD--------AYDYLLENGIVVRKLSGRLEGHIRVT---VGKREENDEFIKALKEIKEG 334 (337)
T ss_pred cEEEEhHH--------HHHHHHHCCEEEEeCCCCCCCeEEEe---cCCHHHHHHHHHHHHHHHHh
Confidence 78887542 678889999999754 35689999 33678889999999887654
No 235
>PRK13580 serine hydroxymethyltransferase; Provisional
Probab=99.76 E-value=2.1e-16 Score=135.34 Aligned_cols=211 Identities=19% Similarity=0.202 Sum_probs=140.7
Q ss_pred hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccc-cccCccCcccccccC-C-CCCCEEE--ee
Q psy6548 15 KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQ-TGLGRTGKLLAIHYE-D-VRPDIVI--LG 89 (242)
Q Consensus 15 ~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~-~~~~~~g~~~~~~~~-~-~~~~~~~--~s 89 (242)
+.+.+..+..+++.+..+.++ ..| +++++++|++||+++++|++| .|+.. +.... ..+ . ...|+++ ++
T Consensus 213 ~~~~~~~~plvii~g~S~~~~-~~d----l~~i~eia~~~gA~L~VD~AH~~Glig-g~~~~-~~~~~~~~~D~vtgT~h 285 (493)
T PRK13580 213 AALAREFKPLILVAGYSAYPR-RVN----FAKLREIADEVGAVLMVDMAHFAGLVA-GKVFT-GDEDPVPHADIVTTTTH 285 (493)
T ss_pred HHHHhhcCCEEEEeCccccCC-CcC----HHHHHHHHHHcCCEEEEECchhhceec-cccch-hhcCCCCCCcEEEeCCh
Confidence 334455666777777666644 554 999999999999999999999 44311 11111 111 1 1457666 67
Q ss_pred ccccCCccchheeEeChhhhhccCCCCCCCCCCCC-HHHHHHHHHHHHHHHhc---cHHHHHHHHHHHHHHHHHhhcCCC
Q psy6548 90 KALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGN-PLACKLAMTALDVILEE---NMIENAYKMGEIFRSELRSRLSPD 165 (242)
Q Consensus 90 K~~~~g~~~~g~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~a~a~l~~~~~~---~~~~~~~~~~~~l~~~l~~~l~~~ 165 (242)
|+|.|+ +.|++++++++++.+... ..+.++++ +...+++..+++.+.++ ++.+++.++.+++++.| ++.+..
T Consensus 286 KaL~GP--~GG~I~~~~~l~~~L~~a-~P~i~gg~l~p~iAA~avAl~e~~~~ef~~y~~~l~~Na~~La~~L-~~~G~~ 361 (493)
T PRK13580 286 KTLRGP--RGGLVLAKKEYADAVDKG-CPLVLGGPLPHVMAAKAVALAEARTPEFQKYAQQVVDNARALAEGF-LKRGAR 361 (493)
T ss_pred hhccCC--CeEEEEecHHHHHHHhhC-CCcccCCCccHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHH-HhcCCC
Confidence 999764 358888999988888432 22333322 22333333345544433 37888999999999999 766632
Q ss_pred CCCeEeeeceeEEEEecCCchhHHHHHHHHHHCCceecc-------CC---CCEEEEeccC----cCCHHHHHHHHHHHH
Q psy6548 166 IVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKP-------IS---NNIIRLSPAL----NITEQELREGLDIII 231 (242)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~-------~~---~~~lR~~~~~----~~t~e~i~~~~~~l~ 231 (242)
+... ...++++++.+.+.......+.+.|.+.||.+.+ .+ ...||++++. .++++|++++++.|.
T Consensus 362 vv~g-gTdshIV~V~lg~~~~~g~~a~~~L~e~GI~vn~i~~Ptvp~g~~~~srLRIg~~A~ttrg~teedi~~iad~l~ 440 (493)
T PRK13580 362 LVTG-GTDNHLVLIDVTSFGLTGRQAESALLDAGIVTNRNSIPSDPNGAWYTSGIRLGTPALTTLGMGSDEMDEVAELIV 440 (493)
T ss_pred ccCC-CCCCCEEEEEeCCHHHHHHHHHHHHHHCCeEEccccCCCCCCCCCCCceEEeccchhhhcCCCHHHHHHHHHHHH
Confidence 2211 1345788888877523345777899999999963 23 5789999887 667999999999999
Q ss_pred HHHHHH
Q psy6548 232 NTINTM 237 (242)
Q Consensus 232 ~~l~~~ 237 (242)
++++..
T Consensus 441 ~~l~~~ 446 (493)
T PRK13580 441 KVLSNT 446 (493)
T ss_pred HHHHhh
Confidence 888754
No 236
>TIGR01977 am_tr_V_EF2568 cysteine desulfurase family protein. This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family. Related families contain members active as cysteine desulfurases, selenocysteine lyases, or both. The members of this family form a distinct clade and all are shorter at the N-terminus. The function of this subfamily is unknown.
Probab=99.76 E-value=2.1e-16 Score=134.18 Aligned_cols=209 Identities=17% Similarity=0.223 Sum_probs=140.8
Q ss_pred Chhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEEe-
Q psy6548 11 QVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVIL- 88 (242)
Q Consensus 11 d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~- 88 (242)
|+++ +...+.++++++++.++|++|.+.+ +++|.++|++||+++|+|++|+ +|.. .+.... ..+|++++
T Consensus 126 d~~~l~~~~~~~~~~v~~~~~~n~tG~~~~----~~~i~~l~~~~~~~livD~a~~-~g~~--~~~~~~--~~~D~~~~s 196 (376)
T TIGR01977 126 SPERIKRAIKTNTKLIVVSHASNVTGTILP----IEEIGELAQENGIFFILDAAQT-AGVI--PIDMTE--LAIDMLAFT 196 (376)
T ss_pred CHHHHHHhcCCCCeEEEEECCCCCccccCC----HHHHHHHHHHcCCEEEEEhhhc-cCcc--CCCchh--cCCCEEEec
Confidence 4555 3333557899999999999998776 8899999999999999999995 3222 112222 34677764
Q ss_pred -eccccCCccchheeEeChhh-hhccCCCC---CC-------------CCCCCCHHHHHHHHHHHHHHHhc---cHHHHH
Q psy6548 89 -GKALSGGLYPISAVLADDEV-MGTLVPGT---HG-------------STYGGNPLACKLAMTALDVILEE---NMIENA 147 (242)
Q Consensus 89 -sK~~~~g~~~~g~~~~~~~~-~~~l~~~~---~~-------------~~~~~~~~~~~~a~a~l~~~~~~---~~~~~~ 147 (242)
.|+++++ .++|.++.+++. +..+.... .. ...+.+.....+..++++.+.+. .+.++.
T Consensus 197 ~~K~l~~p-~g~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~ 275 (376)
T TIGR01977 197 GHKGLLGP-QGTGGLYIREGIKLKPLKSGGTGSHSALIDQPSELPDRFESGTLNTPGIAGLNAGIKFIEKIGIANIAKKE 275 (376)
T ss_pred ccccccCC-CCceEEEEcCCcCcCceecCCCccccccccccccchhhccCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHH
Confidence 4999865 567777666543 12221110 00 01123445566666778877653 356777
Q ss_pred HHHHHHHHHHHHhhcCC-CCCC--eEeeeceeEEEEecCCchhHHHHHHHHHHC-CceeccC--------------CCCE
Q psy6548 148 YKMGEIFRSELRSRLSP-DIVP--VVRGKGLLNAIVLDKSILEVYDVCIKMKDA-GLVTKPI--------------SNNI 209 (242)
Q Consensus 148 ~~~~~~l~~~l~~~l~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-gi~~~~~--------------~~~~ 209 (242)
+.+.+++++.| ++... .+.. .....+.++++.++. .+..++.+.|.++ ||.++.+ ..+.
T Consensus 276 ~~l~~~~~~~l-~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~~~L~~~~gi~v~~g~~~~~~~~~~~g~~~~~~ 352 (376)
T TIGR01977 276 CMLTEKLLNGL-REINKVKIYGPADPANRVGVVSFTVEG--IDSEEVADILDEKFDIATRTGLHCAPLAHKTIGTFATGT 352 (376)
T ss_pred HHHHHHHHHHH-hcCCCeEEeCCCCccccCCeEEEEECC--CCHHHHHHHHhccCCEEEEcccccchHHHHHhCCCCCCe
Confidence 88888888888 54432 1111 111235677777764 4678899999988 9888653 3478
Q ss_pred EEEeccCcCCHHHHHHHHHHHHH
Q psy6548 210 IRLSPALNITEQELREGLDIIIN 232 (242)
Q Consensus 210 lR~~~~~~~t~e~i~~~~~~l~~ 232 (242)
+|++++..+|++|++++++.|++
T Consensus 353 iRis~~~~~t~~dv~~~~~~l~~ 375 (376)
T TIGR01977 353 IRLSLGYFNTEEEIEKLLEALSE 375 (376)
T ss_pred EEEecCCCCCHHHHHHHHHHHhh
Confidence 99999999999999999999875
No 237
>PRK13034 serine hydroxymethyltransferase; Reviewed
Probab=99.75 E-value=2.2e-16 Score=135.40 Aligned_cols=214 Identities=14% Similarity=0.132 Sum_probs=135.0
Q ss_pred CChhh--hcCCCCCEEEEEEc-ccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEE
Q psy6548 10 KQVPA--KLKSNPNICAFMVE-PIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIV 86 (242)
Q Consensus 10 ~d~~~--~~~~~~~~~~i~~e-~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~ 86 (242)
+|+++ +.+...++++|+++ +++++. .+ +++|.++|++||+++|+|++|+ +|-.+.+......+ ..|++
T Consensus 155 ~d~~~le~~l~~~~~klVi~~~~~~g~~---~d----l~~l~~la~~~g~~livD~Aha-~G~~~~g~~~~~~~-~~Di~ 225 (416)
T PRK13034 155 IDYDEVEELAKEHKPKLIIAGFSAYPRE---LD----FARFREIADEVGALLMVDMAHI-AGLVAAGEHPNPFP-HAHVV 225 (416)
T ss_pred cCHHHHHHHHhhcCCeEEEECCCccccc---cC----HHHHHHHHHHcCCEEEEeCccc-ccCcccCCCCCCCC-CceEE
Confidence 67776 44444567888884 444432 22 8899999999999999999994 22222221111111 35666
Q ss_pred E--eeccccCCccchheeEeCh-hhhhccCCCCCCC-CCCCCHHHHHH-HHHHHHHHHh--ccHHHHHHHHHHHHHHHHH
Q psy6548 87 I--LGKALSGGLYPISAVLADD-EVMGTLVPGTHGS-TYGGNPLACKL-AMTALDVILE--ENMIENAYKMGEIFRSELR 159 (242)
Q Consensus 87 ~--~sK~~~~g~~~~g~~~~~~-~~~~~l~~~~~~~-~~~~~~~~~~~-a~a~l~~~~~--~~~~~~~~~~~~~l~~~l~ 159 (242)
+ ++|+++|+ . .|++++++ .+.+.++.....+ +.+.++...++ +.+.++.++. +++.++++++.+++++.|
T Consensus 226 ~~s~~K~l~g~-~-GG~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~al~~~~~~~~~~~~~~l~~~a~~l~~~L- 302 (416)
T PRK13034 226 TTTTHKTLRGP-R-GGMILTNDEEIAKKINSAVFPGLQGGPLMHVIAAKAVAFGEALQPEFKTYAKQVIANAQALAEVL- 302 (416)
T ss_pred EEeCcccCCCC-C-CeEEEECcHHHHHHHHhhcCCcccCCccHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHH-
Confidence 6 67999765 3 45666654 4445554422221 11122333333 3344444322 345789999999999999
Q ss_pred hhcCCCCCCeEeeeceeEEEEecCCchhHHHHHHHHHHCCceecc----------CCCCEEEEeccC----cCCHHHHHH
Q psy6548 160 SRLSPDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKP----------ISNNIIRLSPAL----NITEQELRE 225 (242)
Q Consensus 160 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~----------~~~~~lR~~~~~----~~t~e~i~~ 225 (242)
++++-.... ....++++.+.+.........+.++|.++||++.+ ..+..+|++++. .++++|+++
T Consensus 303 ~~~G~~~~~-~~~~t~i~~v~~~~~~~~~~~~~~~L~~~GI~v~~~~~p~~~~~p~~~~~lR~~~~~~t~~~~~~~di~~ 381 (416)
T PRK13034 303 KERGYDLVS-GGTDNHLLLVDLRPKGLSGKDAEQALERAGITVNKNTVPGDTESPFVTSGIRIGTPAGTTRGFGEAEFRE 381 (416)
T ss_pred HHcCCEecc-CCCCCcEEEEEcCCCCCCHHHHHHHHHhCCcEEeccCCCCCCcCCCCCCeeEeCcHHHHhCCCCHHHHHH
Confidence 665522211 11345777777766534567777899999999974 134579999888 888999999
Q ss_pred HHHHHHHHHHH
Q psy6548 226 GLDIIINTINT 236 (242)
Q Consensus 226 ~~~~l~~~l~~ 236 (242)
+++.|++++..
T Consensus 382 l~~~l~~~~~~ 392 (416)
T PRK13034 382 IANWILDVLDD 392 (416)
T ss_pred HHHHHHHHHhc
Confidence 99999988874
No 238
>KOG0259|consensus
Probab=99.75 E-value=2e-16 Score=128.07 Aligned_cols=219 Identities=16% Similarity=0.186 Sum_probs=143.4
Q ss_pred Chhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccc-cccC-CCCCCEEE
Q psy6548 11 QVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLA-IHYE-DVRPDIVI 87 (242)
Q Consensus 11 d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~-~~~~-~~~~~~~~ 87 (242)
|++. +.+.+.+|+++++.+++|++| .+++++-|++|+++|+++++++|.||+|..+.+.+.++. +..+ .+.| +++
T Consensus 188 DL~~veal~DENT~AivviNP~NPcG-nVys~~HL~kiae~A~klgi~vIaDEVY~~~vfg~~pfvpmg~fssiVP-Vit 265 (447)
T KOG0259|consen 188 DLDGVEALADENTVAIVVINPNNPCG-NVYSEDHLKKIAETAKKLGIMVIADEVYGHTVFGDKPFVPMGKFSSIVP-VIT 265 (447)
T ss_pred chHHHHHhhccCeeEEEEeCCCCCCc-ccccHHHHHHHHHHHHHhCCeEEehhhcceeecCCCCccchhhccccCc-eEe
Confidence 4555 778889999999999999999 567888999999999999999999999977655555442 2222 2334 444
Q ss_pred ---eecccc-CCccchheeEeChhh--------hhccCCCCCCCCCCCCHHHHHHHHHHHHHHHhcc----HHHHHHHHH
Q psy6548 88 ---LGKALS-GGLYPISAVLADDEV--------MGTLVPGTHGSTYGGNPLACKLAMTALDVILEEN----MIENAYKMG 151 (242)
Q Consensus 88 ---~sK~~~-~g~~~~g~~~~~~~~--------~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~~~----~~~~~~~~~ 151 (242)
+||.+- .| ||+||++....- .+.+..... -+...+.+.|+|.-.-|+.- .++ -..-++.+.
T Consensus 266 lggisKrW~VPG-WRlGWi~~hD~~gvf~~~~~~q~~~~~~~-~~~~p~TiiQ~AlP~IL~kT-p~efF~k~~~~lk~na 342 (447)
T KOG0259|consen 266 LGGISKRWIVPG-WRLGWIALHDPRGVFRDTKVVQGIKNFLD-IIPGPATIIQGALPDILEKT-PEEFFDKKLSFLKSNA 342 (447)
T ss_pred ecccccccccCC-ceeeeEEEecccccccchHHHHHHHHHHh-ccCCccHhHHHHhHHHHHhC-hHHHHHHHHHHHHhhH
Confidence 778766 89 999999865321 111111111 12233344444332222210 122 345667778
Q ss_pred HHHHHHHHhhcCCCC-CCeEeeeceeEEEEecCCc----hhHHHHHHHHH-HCCceeccC----CCCEEEEeccCcCCHH
Q psy6548 152 EIFRSELRSRLSPDI-VPVVRGKGLLNAIVLDKSI----LEVYDVCIKMK-DAGLVTKPI----SNNIIRLSPALNITEQ 221 (242)
Q Consensus 152 ~~l~~~l~~~l~~~~-~~~~~~~~~~~~~~~~~~~----~~~~~~~~~l~-~~gi~~~~~----~~~~lR~~~~~~~t~e 221 (242)
+..-+.| ++++.-. ...+++. .+.++.+.-.. .+-.+|++.|. |+.+++-|+ -++++|++ .....+
T Consensus 343 ~l~y~~L-k~IP~l~cp~kPeg~-mylmv~l~~s~~~~~~dD~dFc~kL~~Eesv~~LPG~af~~~nw~Ri~--i~~~~~ 418 (447)
T KOG0259|consen 343 DLCYSRL-KDIPCLTCPVKPEGC-MYLMVKLNLSLFPDIEDDVDFCQKLAREESVICLPGQAFGLKNWLRIV--ITVEEE 418 (447)
T ss_pred HHHHHHH-hcCCCcccCcCCCcc-eEEEeccchhhhccccccHHHHHHHhhhcceEEeccccccCCCeEEEE--EccChH
Confidence 8888888 7877532 3333433 44554443321 44567888876 568888776 47899999 678889
Q ss_pred HHHHHHHHHHHHHHHHh
Q psy6548 222 ELREGLDIIINTINTMA 238 (242)
Q Consensus 222 ~i~~~~~~l~~~l~~~~ 238 (242)
.++++.+||++.-.+..
T Consensus 419 ~leea~~Rik~Fc~RH~ 435 (447)
T KOG0259|consen 419 MLEEAFSRIKEFCDRHS 435 (447)
T ss_pred HHHHHHHHHHHHHHhhh
Confidence 99999999988766544
No 239
>PF00266 Aminotran_5: Aminotransferase class-V; InterPro: IPR000192 Aminotransferases share certain mechanistic features with other pyridoxal- phosphate dependent enzymes, such as the covalent binding of the pyridoxal- phosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. This entry represents the class V aminotransferases and the related, though functionally distinct, cysteine desulfurases.; GO: 0008152 metabolic process; PDB: 3FFR_A 1N2T_B 1ELQ_A 1N31_A 1ELU_B 1QZ9_A 1VJO_A 3ISL_B 1BJO_B 1BJN_B ....
Probab=99.75 E-value=1.1e-16 Score=135.58 Aligned_cols=202 Identities=20% Similarity=0.294 Sum_probs=147.6
Q ss_pred Chhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEEee
Q psy6548 11 QVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILG 89 (242)
Q Consensus 11 d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~s 89 (242)
|+++ +...+++++++++..+.+.+|...| +++|.++|++||+++++|.+|+ ++.. +..++ ...+|++++|
T Consensus 128 ~~~~~~~~l~~~~~lv~~~~~~~~tG~~~p----i~~I~~~~~~~~~~~~vD~~~~-~g~~--~id~~--~~~~D~~~~s 198 (371)
T PF00266_consen 128 DLEDLEEALNPDTRLVSISHVENSTGVRNP----IEEIAKLAHEYGALLVVDAAQS-AGCV--PIDLD--ELGADFLVFS 198 (371)
T ss_dssp SHHHHHHHHHTTESEEEEESBETTTTBBSS----HHHHHHHHHHTTSEEEEE-TTT-TTTS--S--TT--TTTESEEEEE
T ss_pred hhhhhhhhhccccceEEeecccccccEEee----eceehhhhhccCCceeEechhc-cccc--ccccc--ccccceeeec
Confidence 3444 3333589999999999999998777 9999999999999999999996 3222 22223 3456888866
Q ss_pred --ccccCCccchheeEeChhhhhccCCCCCCCC------------------C---CCCHHHHHHHHHHHHHHHh---ccH
Q psy6548 90 --KALSGGLYPISAVLADDEVMGTLVPGTHGST------------------Y---GGNPLACKLAMTALDVILE---ENM 143 (242)
Q Consensus 90 --K~~~~g~~~~g~~~~~~~~~~~l~~~~~~~~------------------~---~~~~~~~~~a~a~l~~~~~---~~~ 143 (242)
| |+|+ .++|++..+++.++++.+...++. + +.+.....+..++++.+.. +.+
T Consensus 199 ~~K-l~gp-~G~g~l~v~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~~~~~~~l~~al~~~~~~g~~~i 276 (371)
T PF00266_consen 199 SHK-LGGP-PGLGFLYVRPEAIERLRPAKPGGGYLDFPSLQEYGLADDARRFEGGTPNVPAIYALNEALKLLEEIGIERI 276 (371)
T ss_dssp STS-TTSS-STEEEEEEEHHHHHHHHTSSSSSSTTTHHHHHHHCHHSTTTGSSSSS--HHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccc-cCCC-CchhhheehhhhhhccccccccccccccccchhcccccccccccccceeeehhhhHHHHHhhhhccccccc
Confidence 9 8887 789999999999998865433222 1 2445566666677887744 456
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCC---CeEeeeceeEEEEecCCchhHHHHHHHHHHCCceeccCC------------CC
Q psy6548 144 IENAYKMGEIFRSELRSRLSPDIV---PVVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPIS------------NN 208 (242)
Q Consensus 144 ~~~~~~~~~~l~~~l~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~------------~~ 208 (242)
.++..++.+++++.| +.++.... ......+.++.+.++. .+...+.+.|.++||.++.+. .+
T Consensus 277 ~~~~~~l~~~~~~~l-~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~~~~~~L~~~~I~~~~G~~~~~~~~~~~~~~~ 353 (371)
T PF00266_consen 277 RERIRELAEYLREAL-EELPGIEVLGPDDEPRRPSIVSFNLPG--SDADDVVKYLEERGIAVSTGSACAGPSLDILGMGG 353 (371)
T ss_dssp HHHHHHHHHHHHHHH-HHTTTEEESSSSCGGBGTTEEEEEETT--SSHHHHHHHHHHHTEEEEESTTTCHHHHHHHHTTT
T ss_pred hhhhhhHHHHHHhhh-hcCCceeEeeecccccccceEEEeecC--CCHHHHHHHHhhcCEEEeccCcccHHHHHHhCCCC
Confidence 788889999999999 77764211 2234456778888855 478999999999999998741 38
Q ss_pred EEEEeccCcCCHHHHHHH
Q psy6548 209 IIRLSPALNITEQELREG 226 (242)
Q Consensus 209 ~lR~~~~~~~t~e~i~~~ 226 (242)
.+|++++.++|++|++++
T Consensus 354 ~iRvS~~~~nt~~dv~~l 371 (371)
T PF00266_consen 354 VIRVSLHYYNTEEDVDRL 371 (371)
T ss_dssp EEEEE-GTTSSHHHHHHH
T ss_pred EEEEeccCCCCHHHHhhC
Confidence 999999999999999985
No 240
>cd00378 SHMT Serine-glycine hydroxymethyltransferase (SHMT). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). SHMT carries out interconversion of serine and glycine; it catalyzes the transfer of hydroxymethyl group of N5, N10-methylene tetrahydrofolate to glycine resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers; the mammalian enzyme forms a homotetramer comprising four pyridoxal phosphate-bound active sites.
Probab=99.75 E-value=1.4e-16 Score=136.51 Aligned_cols=213 Identities=16% Similarity=0.149 Sum_probs=135.8
Q ss_pred Chhh--hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccc-cccCccCcccccccCCCCCCEEE
Q psy6548 11 QVPA--KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQ-TGLGRTGKLLAIHYEDVRPDIVI 87 (242)
Q Consensus 11 d~~~--~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~-~~~~~~g~~~~~~~~~~~~~~~~ 87 (242)
|+++ +.+.+++++++++.+..+ |...+ +++|+++|++||+++|+|++| .|+...|.. ... .. ..|+++
T Consensus 149 d~~~l~~~i~~~~~~~v~~~~~~~--~~~~~----~~~I~~l~~~~~~~li~D~a~~~g~~~~g~~-~~~-~~-~~dv~~ 219 (402)
T cd00378 149 DYDALEKMALEFKPKLIVAGASAY--PRPID----FKRFREIADEVGAYLLVDMAHVAGLVAGGVF-PNP-LP-GADVVT 219 (402)
T ss_pred CHHHHHHHHHhCCCCEEEecCccc--CCCcC----HHHHHHHHHhcCCEEEEEccchhhhhhcccC-CCc-cc-CCcEEE
Confidence 5666 444455677777765433 32222 899999999999999999997 544222211 111 11 346554
Q ss_pred --eeccccCCccchheeEeCh-hhhhccCCCCCCCCCCCC-HHHHHHHHHHHHHHHh---ccHHHHHHHHHHHHHHHHHh
Q psy6548 88 --LGKALSGGLYPISAVLADD-EVMGTLVPGTHGSTYGGN-PLACKLAMTALDVILE---ENMIENAYKMGEIFRSELRS 160 (242)
Q Consensus 88 --~sK~~~~g~~~~g~~~~~~-~~~~~l~~~~~~~~~~~~-~~~~~~a~a~l~~~~~---~~~~~~~~~~~~~l~~~l~~ 160 (242)
++|+| +| +++|++++++ ++++.+......+.++.+ .....++..++..... +++.++++++++++++.| +
T Consensus 220 ~s~sK~l-~G-~~gg~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L-~ 296 (402)
T cd00378 220 TTTHKTL-RG-PRGGLILTRKGELAKKINSAVFPGLQGGPHLHVIAAKAVALKEALEPEFKAYAKQVVENAKALAEAL-K 296 (402)
T ss_pred eccccCC-CC-CCceEEEeccHHHHHHHHHHhCccccCCchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH-H
Confidence 78999 55 7889998876 787777543222223322 2233232233332222 346677888899999999 6
Q ss_pred hcCCCCCCeEeeeceeEEEEecCCchhHHHHHHHHHHCCceeccC----------CCCEEEEeccCc----CCHHHHHHH
Q psy6548 161 RLSPDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPI----------SNNIIRLSPALN----ITEQELREG 226 (242)
Q Consensus 161 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~----------~~~~lR~~~~~~----~t~e~i~~~ 226 (242)
.++-... ..+..++++|+.++....+...+.+.|.++||.+.+. ..+.+|++++.. ++++|++++
T Consensus 297 ~~g~~~~-~~~~~~~~v~v~~~~~~~~~~~~~~~l~~~gI~v~~~~~p~~~~~~~~~~~lRi~~~~~~~~~~~~~di~~~ 375 (402)
T cd00378 297 ERGFKVV-SGGTDNHLVLVDLRPKGITGKAAEDALEEAGITVNKNTLPWDPSSPFVPSGIRIGTPAMTTRGMGEEEMEEI 375 (402)
T ss_pred hCCCeEe-ecCCCCeEEEEeCCccCCCHHHHHHHHHHcCcEEcCCcCCCCCCCCCCCCeeEecCHHHHHhCCCHHHHHHH
Confidence 5542111 1123578889988753234567788888899999631 346899987664 479999999
Q ss_pred HHHHHHHHHH
Q psy6548 227 LDIIINTINT 236 (242)
Q Consensus 227 ~~~l~~~l~~ 236 (242)
++.|++++++
T Consensus 376 ~~~l~~~~~~ 385 (402)
T cd00378 376 ADFIARALKD 385 (402)
T ss_pred HHHHHHHHhc
Confidence 9999998765
No 241
>KOG1368|consensus
Probab=99.73 E-value=2.2e-17 Score=129.60 Aligned_cols=210 Identities=14% Similarity=0.136 Sum_probs=151.9
Q ss_pred CCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCE--EEeeccccCCc
Q psy6548 19 NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDI--VILGKALSGGL 96 (242)
Q Consensus 19 ~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~--~~~sK~~~~g~ 96 (242)
.+.+++|++|+.++++|+.+.+-+|+.++.++|++||+.+..|.+.-.-.....+.....+.-..|- +++||++|+++
T Consensus 152 ~p~T~LIclENT~~~~Gg~vlPle~~~~v~~lak~~glkLH~DGARi~NAavasgV~vk~i~~~fDSVsiCLSKglgAPV 231 (384)
T KOG1368|consen 152 MPPTKLICLENTHNNCGGKVLPLEELDRVKALAKRHGLKLHMDGARIFNAAVASGVPVKKICSAFDSVSICLSKGLGAPV 231 (384)
T ss_pred CCCceEEEeeccccccCceEeeHHHHHHHHHHHhccCCeeecchhhhhhHHHHcCCCHHHHHHhhhhhhhhhhccCCCCc
Confidence 4579999999999999988889999999999999999999999876311111111111222222343 34999999652
Q ss_pred cchheeEeChhhhhccCCC--CCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhhcCCCCCCeEe-ee
Q psy6548 97 YPISAVLADDEVMGTLVPG--THGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELRSRLSPDIVPVVR-GK 173 (242)
Q Consensus 97 ~~~g~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~-~~ 173 (242)
.+.+++++++++..+.. ..++.+..+.+.+++++-+++. .-....+.+++++.+.+.+ +..+. +...++ ..
T Consensus 232 --GSViVG~k~FI~kA~~~RKalGGGmRQsGvLaaaaLval~~--~~~~L~~dHk~A~~lAe~~-~~~~~-i~v~v~a~e 305 (384)
T KOG1368|consen 232 --GSVIVGSKDFIDKARHFRKALGGGMRQSGVLAAAALVALDE--NVPLLRADHKRAKELAEYI-NTPEE-IRVEVPAVE 305 (384)
T ss_pred --ccEEEccHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHhhc--chHHHHHHHHHHHHHHHHh-ccccc-eeeecchhh
Confidence 33566888888765432 3455556666666666666652 2225667778888888888 65442 333333 45
Q ss_pred ceeEEEEecCCchhHHHHHHHHHHCCceeccCCCCEEEEeccCcCCHHHHHHHHHHHHHHH
Q psy6548 174 GLLNAIVLDKSILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTI 234 (242)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~lR~~~~~~~t~e~i~~~~~~l~~~l 234 (242)
+.++.+.+.+...+++++++.+.+.||.+.++...++|+.+|...|.++++.++..+.+.+
T Consensus 306 tNiv~~~l~q~~~~~~~l~~~~~k~gi~lm~~~s~r~Rivlh~Qvt~~~ve~~~~~~~k~~ 366 (384)
T KOG1368|consen 306 TNIVNMVLCQARLTAEELCKFLEKNGILLMGGASRRIRIVLHHQVTDEDVEYVKSVLSKKF 366 (384)
T ss_pred cceeeeecccccCCHHHHHHHHHHCCeEEeeccccceEEEEEEecCHHHHHHHHHHHHHHH
Confidence 6788888877767899999999999999999888889999999999999999999995443
No 242
>TIGR03812 tyr_de_CO2_Arch tyrosine decarboxylase MnfA. Members of this protein family are the archaeal form, MnfA, of tyrosine decarboxylase, and are involved in methanofuran biosynthesis. Members show clear homology to the Enterococcus form, Tdc, that is involved in tyrosine decarboxylation for resistance to acidic conditions.
Probab=99.73 E-value=2.7e-16 Score=133.34 Aligned_cols=209 Identities=12% Similarity=0.138 Sum_probs=135.4
Q ss_pred Chhh--hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCc-c---Cccc-ccccCCCCC
Q psy6548 11 QVPA--KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGR-T---GKLL-AIHYEDVRP 83 (242)
Q Consensus 11 d~~~--~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~-~---g~~~-~~~~~~~~~ 83 (242)
|+++ +.+.++...++++.| .+++|.+.+ +++|.++|++||+++++|++|.++.. . |... ..+..-...
T Consensus 142 d~~~l~~~l~~~~~~vv~~~~-~~~tG~~~~----~~~i~~l~~~~~~~livD~a~~~~~~~~~~~~~~~~~~d~~~~~~ 216 (373)
T TIGR03812 142 DVKDVEDLIDDNTIGIVGIAG-TTELGQIDD----IEELSKIALENGIYLHVDAAFGGFVIPFLKKGYNPPPFDFSLPGV 216 (373)
T ss_pred CHHHHHHHHhhCcEEEEEECC-CCCCCccCC----HHHHHHHHHHcCCeEEEEcCchhHHHHHHhcCCCCCCccccCCCC
Confidence 5666 333333345666665 678887765 99999999999999999999964311 0 0000 001100133
Q ss_pred CEEEe--eccccCCccchheeE-eChhhhhccCCCCC--CCC------CCCCHHHHHHHHHHHHHHHhc---cHHHHHHH
Q psy6548 84 DIVIL--GKALSGGLYPISAVL-ADDEVMGTLVPGTH--GST------YGGNPLACKLAMTALDVILEE---NMIENAYK 149 (242)
Q Consensus 84 ~~~~~--sK~~~~g~~~~g~~~-~~~~~~~~l~~~~~--~~~------~~~~~~~~~~a~a~l~~~~~~---~~~~~~~~ 149 (242)
|.+++ .|+..++ .++|+++ .++++++.+..... ... .+.+....+++.++++.+..+ ++.++..+
T Consensus 217 d~~~~s~~K~~~~~-~~~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~gt~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~ 295 (373)
T TIGR03812 217 QSITIDPHKMGLSP-IPAGGILFRSKSYLKYLSVDAPYLTVKKQATITGTRSGASAAATYAVIKYLGREGYRKIVAECME 295 (373)
T ss_pred CEEEECccccCCCc-CCceEEEEeCHHHHhhhcccCcccCCCCCcceEeechhHHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence 55554 3854466 6777655 57777766542110 000 123345666677778766443 46788889
Q ss_pred HHHHHHHHHHhhcCCCCCCeEeeeceeEEEEecCCchhHHHHHHHHHHCCceeccC-CCCEEEEeccCcCCHHHHHHHHH
Q psy6548 150 MGEIFRSELRSRLSPDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPI-SNNIIRLSPALNITEQELREGLD 228 (242)
Q Consensus 150 ~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~-~~~~lR~~~~~~~t~e~i~~~~~ 228 (242)
+++++++.| +.++.... ..+...++.+.+++ ..++.++|.++||.++.. .++.+|++++..+|++|++++++
T Consensus 296 ~~~~l~~~L-~~~g~~~~--~~~~~~~v~~~~~~----~~~v~~~L~~~gi~v~~~~~~~~iRis~~~~~t~edid~l~~ 368 (373)
T TIGR03812 296 NTRYLVEEL-KKIGFEPV--IEPVLNIVAFEVDD----PEEVRKKLRDRGWYVSVTRCPKALRIVVMPHVTREHIEEFLE 368 (373)
T ss_pred HHHHHHHHH-HhCCCeEE--cCCCceEEEEEeCC----HHHHHHHHHHCCceeccCCCCCEEEEEEECCCCHHHHHHHHH
Confidence 999999999 66652111 12334556666543 357999999999999876 56789999988899999999999
Q ss_pred HHHH
Q psy6548 229 IIIN 232 (242)
Q Consensus 229 ~l~~ 232 (242)
.|++
T Consensus 369 ~L~~ 372 (373)
T TIGR03812 369 DLKE 372 (373)
T ss_pred HHhh
Confidence 9975
No 243
>COG3977 Alanine-alpha-ketoisovalerate (or valine-pyruvate) aminotransferase [Amino acid transport and metabolism]
Probab=99.73 E-value=6e-16 Score=121.82 Aligned_cols=216 Identities=14% Similarity=0.159 Sum_probs=146.1
Q ss_pred CCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccC-CCCCCEEE---eecccc
Q psy6548 18 SNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYE-DVRPDIVI---LGKALS 93 (242)
Q Consensus 18 ~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~-~~~~~~~~---~sK~~~ 93 (242)
...++.+||+.-+-|++| .+.+++++.+|.++++.||+++|+|.+|. .-..+--+. +.. -..++++. +||.=-
T Consensus 176 i~e~~g~ic~SRPtNPTG-NVlTdeE~~kldalA~~~giPliIDnAYg-~PFP~iifs-d~~~~w~~NiilC~SLSK~GL 252 (417)
T COG3977 176 IGESTGAICVSRPTNPTG-NVLTDEELAKLDALARQHGIPLIIDNAYG-VPFPGIIFS-DATPLWNENIILCMSLSKLGL 252 (417)
T ss_pred cccccceEEecCCCCCCC-CcccHHHHHHHHHHhhhcCCcEEEecccC-CCCCceecc-cccccCCCCEEEEeehhhcCC
Confidence 357899999999999999 56678899999999999999999999984 211221121 111 12345443 667444
Q ss_pred CCccchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHH---H--HHhccHHHHHHHHHHHHHHHHHhhcCC-CCC
Q psy6548 94 GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALD---V--ILEENMIENAYKMGEIFRSELRSRLSP-DIV 167 (242)
Q Consensus 94 ~g~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~---~--~~~~~~~~~~~~~~~~l~~~l~~~l~~-~~~ 167 (242)
.| .|+|.+++++++++.+...--..+........+.+...++ + +.++-++.-.++..+...+.|++.++. .+.
T Consensus 253 PG-~R~GIiIane~viqaitnmn~iisLap~~~G~Aia~~mie~gdl~rlseqVIrPFY~~~~q~~~~~l~~~lp~~~~~ 331 (417)
T COG3977 253 PG-SRCGIIIANEKVIQAITNMNGIISLAPGRMGPAIAAEMIESGDLLRLSEQVIRPFYRNRVQTTIAILRRYLPEYRCL 331 (417)
T ss_pred CC-cceeEEEccHHHHHHHHhccceeeecCCCccHHHHHHHhhcchHHHHHHHhhhHHHHHHHHHHHHHHHHhcCcccee
Confidence 67 8999999999999988764222222222233322222222 1 111223444555666666666555653 333
Q ss_pred CeEeeeceeEEEEecCCchhHHHHHHHHHHCCceeccC-------------CCCEEEEeccCcCCHHHHHHHHHHHHHHH
Q psy6548 168 PVVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPI-------------SNNIIRLSPALNITEQELREGLDIIINTI 234 (242)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~-------------~~~~lR~~~~~~~t~e~i~~~~~~l~~~l 234 (242)
.+-+....+.|+.+.+-....++++++|+++|+++.|+ .+.++|++ +..+++++++.+++|.+.+
T Consensus 332 iHkpEGAIFlWLWf~dLPItt~~LYq~LKa~Gvl~VPG~~FFpGl~~ewpH~hqC~Rmn--~~~~~~~ie~Gva~lae~v 409 (417)
T COG3977 332 IHKPEGAIFLWLWFKDLPITTEELYQRLKARGVLMVPGHYFFPGLDKEWPHTHQCMRMN--YVPEPEKIEKGVAILAEEV 409 (417)
T ss_pred eecCCcceeehhhhccCCCCHHHHHHHHHhCeEEEecccccCCCCCCCCCCccceEEEe--cCCCHHHHHHHHHHHHHHH
Confidence 44444556777776665567899999999999999886 24689999 8889999999999999988
Q ss_pred HHHhh
Q psy6548 235 NTMAA 239 (242)
Q Consensus 235 ~~~~~ 239 (242)
++.-+
T Consensus 410 e~~yq 414 (417)
T COG3977 410 ERAYQ 414 (417)
T ss_pred HHHHh
Confidence 87644
No 244
>PTZ00094 serine hydroxymethyltransferase; Provisional
Probab=99.73 E-value=2.9e-16 Score=136.22 Aligned_cols=213 Identities=13% Similarity=0.122 Sum_probs=135.9
Q ss_pred Chhh--hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCccc-ccccCCCCCCEEE
Q psy6548 11 QVPA--KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLL-AIHYEDVRPDIVI 87 (242)
Q Consensus 11 d~~~--~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~-~~~~~~~~~~~~~ 87 (242)
|+++ +.+.+.+++.+++. .+..|...+ +++|.++|+++|+++++|++|+ +|..+... ..+.. ..|+++
T Consensus 170 d~~~L~~~l~~~~~~lvi~~--~s~~g~~~d----i~~I~~i~~~~ga~l~vDaaq~-~G~i~~~~~~~~~~--~~D~l~ 240 (452)
T PTZ00094 170 DYDKLEELAKAFRPKLIIAG--ASAYPRDID----YKRFREICDSVGAYLMADIAHT-SGLVAAGVLPSPFP--YADVVT 240 (452)
T ss_pred CHHHHHHHHHHhCCCEEEEe--CCCCCCccC----HHHHHHHHHHcCCEEEEeccch-hccccCCCCCCCCC--CCcEEE
Confidence 7777 44544455555552 345675665 9999999999999999999995 33232111 11111 468887
Q ss_pred ee--ccccCCccchheeEeChhhhhccCC----CCC-CCCCCCCHHHHHHHHHHHHHHHh---ccHHHHHHHHHHHHHHH
Q psy6548 88 LG--KALSGGLYPISAVLADDEVMGTLVP----GTH-GSTYGGNPLACKLAMTALDVILE---ENMIENAYKMGEIFRSE 157 (242)
Q Consensus 88 ~s--K~~~~g~~~~g~~~~~~~~~~~l~~----~~~-~~~~~~~~~~~~~a~a~l~~~~~---~~~~~~~~~~~~~l~~~ 157 (242)
+| |+|+|+ . .|+++.++++.+.+.+ ... ....+.++...++..++++.+.. +++.+++.++.+++++.
T Consensus 241 ~S~hK~l~GP-~-Gg~l~~~~~~~~~l~~~~~~~~~p~~~G~~~~~~iaal~~al~~~~~~~~~~~~~~i~~l~~~l~~~ 318 (452)
T PTZ00094 241 TTTHKSLRGP-R-SGLIFYRKKVKPDIENKINEAVFPGLQGGPHNHQIAAIAVQLKEVQSPEWKEYAKQVLKNAKALAAA 318 (452)
T ss_pred cCCccCCCCC-C-ceEEEEecccchHHHHhhccccCCCCCCCchHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHH
Confidence 54 999876 4 4777776654332211 111 11113455566666677887744 34678889999999999
Q ss_pred HHhhcCCCCCCeEeeeceeEEEEecCCchhHHHHHHHHHHCCceecc----C-----CCCEEEEeccCcCC----HHHHH
Q psy6548 158 LRSRLSPDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKP----I-----SNNIIRLSPALNIT----EQELR 224 (242)
Q Consensus 158 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~----~-----~~~~lR~~~~~~~t----~e~i~ 224 (242)
| ++.+..+..... ......+.+...+.+..++...|.++||.+.. + .++.+|++++...+ ++|++
T Consensus 319 L-~~~g~~v~~~~~-~~~~~~v~~~~~~~~~~~~~~~L~~~gI~vs~~~~p~~~~~~~~~~vRis~~~~tt~g~~~~di~ 396 (452)
T PTZ00094 319 L-EKRGYDLVTGGT-DNHLVLVDLRPFGITGSKMEKLLDAVNISVNKNTIPGDKSALNPSGVRLGTPALTTRGAKEKDFK 396 (452)
T ss_pred H-HhCCcEEecCCC-CCceEeecCCcCCCCHHHHHHHHHHCCcEEecccCCCCCcCCCCCeEEECCHHHHhCCCCHHHHH
Confidence 9 554321111101 12344555544334677888888888999952 2 24789999977765 99999
Q ss_pred HHHHHHHHHHHH
Q psy6548 225 EGLDIIINTINT 236 (242)
Q Consensus 225 ~~~~~l~~~l~~ 236 (242)
++++.|.+++..
T Consensus 397 ~l~~~l~~~~~~ 408 (452)
T PTZ00094 397 FVADFLDRAVKL 408 (452)
T ss_pred HHHHHHHHHHHH
Confidence 999999998875
No 245
>TIGR02006 IscS cysteine desulfurase IscS. This model represents IscS, one of several cysteine desulfurases from a larger protein family designated (misleadingly, in this case) class V aminotransferases. IscS is one of at least 6 enzymes characteristic of the IscSUA-hscAB-fsx system of iron-sulfur cluster assembly. Scoring almost as well as proteobacterial sequences included in the model are mitochondrial cysteine desulfurases, apparently from an analogous system in eukaryotes. The sulfur, taken from cysteine, may be used in other systems as well, such as tRNA base modification and biosynthesis of other cofactors.
Probab=99.73 E-value=1.4e-15 Score=130.35 Aligned_cols=211 Identities=12% Similarity=0.169 Sum_probs=136.7
Q ss_pred Chhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEEee
Q psy6548 11 QVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILG 89 (242)
Q Consensus 11 d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~s 89 (242)
|+++ +...++++++++++.++|++|...+ +++|.++|++||+++++|++|+ ++.. +.. ..+..+|++++|
T Consensus 131 d~~~l~~~l~~~~~lv~v~~~~n~tG~~~~----~~~I~~l~~~~g~~livD~a~a-~g~~--~~~--~~~~~~D~~~~s 201 (402)
T TIGR02006 131 DLEELKAAIRDDTILVSIMHVNNEIGVIQD----IAAIGEICRERKVFFHVDAAQS-VGKI--PIN--VNELKVDLMSIS 201 (402)
T ss_pred CHHHHHHhcCCCCEEEEEECCCcCceeccc----HHHHHHHHHHcCCEEEEEcchh-cCCc--ccC--ccccCCCEEEEe
Confidence 4555 4444567899999999999998776 8999999999999999999996 3222 122 224467898887
Q ss_pred --ccccCCccchheeEeChhhhhccCCCCCCC-------CCCCCHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHH
Q psy6548 90 --KALSGGLYPISAVLADDEVMGTLVPGTHGS-------TYGGNPLACKLAMTALDVILE--ENMIENAYKMGEIFRSEL 158 (242)
Q Consensus 90 --K~~~~g~~~~g~~~~~~~~~~~l~~~~~~~-------~~~~~~~~~~~a~a~l~~~~~--~~~~~~~~~~~~~l~~~l 158 (242)
|.++ + .++|+++.+++....+.+...++ ..+.+.....+..++++.+.. +...++.+++++++++.|
T Consensus 202 ~~K~~g-p-~G~G~l~~~~~~~~~~~~~~~g~~~~~~~~~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~l 279 (402)
T TIGR02006 202 GHKIYG-P-KGIGALYVRRKPRVRLEALIHGGGHERGMRSGTLPTHQIVGMGEAFRIAKEEMAQDTAHVLALRDRLLNGI 279 (402)
T ss_pred hhhhcC-C-CceEEEEEccCCCCCCCceecCCCccCCccCCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 9765 4 56888888876555555432221 113344455555567776654 345677888888888888
Q ss_pred HhhcCCC-CCCeEeeec-eeEEEEecCCchhHHHHHHHHHHCCceeccC-----------------------CCCEEEEe
Q psy6548 159 RSRLSPD-IVPVVRGKG-LLNAIVLDKSILEVYDVCIKMKDAGLVTKPI-----------------------SNNIIRLS 213 (242)
Q Consensus 159 ~~~l~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~-----------------------~~~~lR~~ 213 (242)
+.++.. ......... ..+.+.+.. ...+.+...| +++.++.+ ..+.+|++
T Consensus 280 -~~~~~v~~~~~~~~~~p~~~~v~f~~--~~~~~~~~~l--~~i~v~~G~~c~~~~~~~~~~l~~lg~~~~~~~~~vR~S 354 (402)
T TIGR02006 280 -KSIEEVYLNGDLEHRVPGNLNVSFNY--VEGESLIMAL--KDLAVSSGSACTSASLEPSYVLRALGINDELAHSSIRFT 354 (402)
T ss_pred -hcCCCEEEeCCccccCCCeEEEEEeC--cCHHHHHHhc--CCEEEechhhcCCCCCCccHHHHHcCCChhhcCceEEEE
Confidence 655421 111111111 122233332 2334555444 45554321 13789999
Q ss_pred ccCcCCHHHHHHHHHHHHHHHHHH
Q psy6548 214 PALNITEQELREGLDIIINTINTM 237 (242)
Q Consensus 214 ~~~~~t~e~i~~~~~~l~~~l~~~ 237 (242)
++.++|++|++++++.|+++++.+
T Consensus 355 ~~~~~t~edid~l~~~l~~~~~~~ 378 (402)
T TIGR02006 355 IGRFTTEEEIDYAVKLVKSAIDKL 378 (402)
T ss_pred ecCCCCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999988775
No 246
>COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]
Probab=99.73 E-value=7e-16 Score=127.36 Aligned_cols=213 Identities=17% Similarity=0.222 Sum_probs=153.1
Q ss_pred Chhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEEee
Q psy6548 11 QVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILG 89 (242)
Q Consensus 11 d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~s 89 (242)
|+++ +.+..++|.+|.+..++|.+|.+.| +++|.++|+++++++.+|.+|+ +|+.. . +......|+++||
T Consensus 130 ~~e~L~~al~~~T~LVSim~aNnE~G~IQp----I~ei~~i~k~~~i~fHvDAvQa-~Gkip--i--~~~~~~vD~ls~S 200 (386)
T COG1104 130 DLEQLEEALRPDTILVSIMHANNETGTIQP----IAEIGEICKERGILFHVDAVQA-VGKIP--I--DLEELGVDLLSFS 200 (386)
T ss_pred cHHHHHHhcCCCceEEEEEecccCeeeccc----HHHHHHHHHHcCCeEEEehhhh-cCcee--c--cccccCcceEEee
Confidence 4555 5556678999999999999998888 9999999999999999999996 43332 2 2223347999987
Q ss_pred --ccccCCccchheeEeChhhhhccCCCCCCCCC-------CCCHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHH
Q psy6548 90 --KALSGGLYPISAVLADDEVMGTLVPGTHGSTY-------GGNPLACKLAMTALDVILE--ENMIENAYKMGEIFRSEL 158 (242)
Q Consensus 90 --K~~~~g~~~~g~~~~~~~~~~~l~~~~~~~~~-------~~~~~~~~~a~a~l~~~~~--~~~~~~~~~~~~~l~~~l 158 (242)
|-.| + -++|+++.++.. .+.+..+++.+ +.|..+.++.-+|++...+ +....+++++++++.+.|
T Consensus 201 aHK~~G-p-kGiGaLyv~~~~--~~~p~i~GGgQE~g~RsGTenv~~Ivg~~~A~~~a~~~~~~~~~~~~~lr~~l~~~l 276 (386)
T COG1104 201 AHKFGG-P-KGIGALYVRPGV--RLEPLIHGGGQERGLRSGTENVPGIVGFGKAAEIAVEELEEENARLRKLRDRLEDGL 276 (386)
T ss_pred hhhccC-C-CceEEEEECCCC--ccCceeccCcCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555 3 457887775543 34444444332 3355566555556665543 346788899999999999
Q ss_pred Hhhc-CCCCCC-e-EeeeceeEEEEecCCchhHHHHHHHHHHCCceeccC-----------------------CCCEEEE
Q psy6548 159 RSRL-SPDIVP-V-VRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPI-----------------------SNNIIRL 212 (242)
Q Consensus 159 ~~~l-~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~-----------------------~~~~lR~ 212 (242)
+.. +..... . .+.....+.+.++. ...+.+.-.|-.+||.++.+ -.+.|||
T Consensus 277 -~~~~p~~~~~g~~~~rlP~~~~~~f~g--v~gE~ll~~L~~~gI~vStGSACsS~~~~pShVL~AmG~~~e~a~~siR~ 353 (386)
T COG1104 277 -LEIIPDVYLNGDDEPRLPNILNFSFPG--VEGESLLLALDLAGIAVSTGSACSSGSLEPSHVLRAMGISEELAHGSIRF 353 (386)
T ss_pred -HhcCCcEEEcCCcccCCCCeEEEEeCC--CcHHHHHHhccccCeEEeccccccCCCCCccHHHHHcCCChHHhCccEEE
Confidence 544 432111 1 23344566677776 47888888888899999753 1368999
Q ss_pred eccCcCCHHHHHHHHHHHHHHHHHHhh
Q psy6548 213 SPALNITEQELREGLDIIINTINTMAA 239 (242)
Q Consensus 213 ~~~~~~t~e~i~~~~~~l~~~l~~~~~ 239 (242)
++...+|++|++++++.+.+++++++.
T Consensus 354 S~g~~tt~eei~~~~~~l~~~i~~lr~ 380 (386)
T COG1104 354 SLGRFTTEEEIDAAAEALKEIIKRLRE 380 (386)
T ss_pred EcCCCCCHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999998765
No 247
>KOG1357|consensus
Probab=99.72 E-value=5.2e-17 Score=133.91 Aligned_cols=221 Identities=18% Similarity=0.251 Sum_probs=154.0
Q ss_pred cccccCCCChhh--hcCC---------CC---CEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccc--
Q psy6548 3 LQFPVKSKQVPA--KLKS---------NP---NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTG-- 66 (242)
Q Consensus 3 ~~~~~~~~d~~~--~~~~---------~~---~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~-- 66 (242)
.+..|.|||..+ +.++ ++ +.-.|++|+.+++.|.++. ++++++++++|.++++.||+|+.
T Consensus 244 tiRVfkHNdm~~LEr~Lrd~I~~gqP~Thrp~kki~iivegiysmEg~iv~----Lp~vvalkkkykayl~lDEAHSiGA 319 (519)
T KOG1357|consen 244 TTRVFRHNDMQGLERLLRDAIVYGQPKTHRPWKKILICVEGIYSMEGTIVD----LPEVVALKKKYKAYLYLDEAHSIGA 319 (519)
T ss_pred eEEEEecCCHHHHHHHHHHHHhcCCCCcCCcchheeeeeccceeccCeecc----cHHHHHhhccccEEEEeeccccccc
Confidence 567899999988 4442 11 3457999999999998886 89999999999999999999963
Q ss_pred cCccCcccccccCCCCCC-----EEEeeccccCCccchheeEeChhhhhccCCCCCCCCC--CCCHHHHHHHHHHHHHHH
Q psy6548 67 LGRTGKLLAIHYEDVRPD-----IVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTY--GGNPLACKLAMTALDVIL 139 (242)
Q Consensus 67 ~~~~g~~~~~~~~~~~~~-----~~~~sK~~~~g~~~~g~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~a~a~l~~~~ 139 (242)
.|++|.+ ..+.++.++. +.+|.|+|+++ .|++.+++++++.++..+....+ +.+|+.+.....+++.+.
T Consensus 320 ~g~tGrg-vce~~g~d~~dvDImMGtftKSfga~---GGyiagsk~lid~lrt~s~~~~yat~~sppvaqq~~ssl~~i~ 395 (519)
T KOG1357|consen 320 MGATGRG-VCEYFGVDPEDVDIMMGTFTKSFGAA---GGYIAGSKELIDYLRTPSPSALYATSLSPPVAQQILTSVKHIM 395 (519)
T ss_pred cCCCCcc-eeeccCCCchhheeecceehhhcccc---cceecCcHHHHhhhccCCCceeecccCChHHHHHHHHHHHhhc
Confidence 4566654 4466666543 23378999932 46799999999998875444333 234444434455677664
Q ss_pred h-------ccHHHHHHHHHHHHHHHHHhhcCCCCCCeEeeeceeEEEEecCCchhHHHHHHHHHHCCceeccC-------
Q psy6548 140 E-------ENMIENAYKMGEIFRSELRSRLSPDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPI------- 205 (242)
Q Consensus 140 ~-------~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~------- 205 (242)
- ++..+++.++..++|..+ +..+ +.......++.+.+-+-.. .....+.++|+++++.+...
T Consensus 396 G~dgt~~g~~k~~~l~~ns~yfr~~l-~~~g--fivyG~~dSpVvplll~~~-~k~~~f~r~~l~~nigvVvvgfPatpl 471 (519)
T KOG1357|consen 396 GEDGTNRGRQKIERLAENSRYFRWEL-QKMG--FIVYGNNDSPVVPLLLYGP-AKIVAFSREMLERNIGVVVVGFPATPL 471 (519)
T ss_pred CCCcccHHHHHHHHHHhhhHHHHHhh-hcCc--EEEecCCCCCcceeeecCc-ccccHHHHHHHhcCceEEEEeCCCchH
Confidence 2 234567777888888777 5443 2333333444444444444 45678899999997766422
Q ss_pred CCCEEEEeccCcCCHHHHHHHHHHHHHHHH
Q psy6548 206 SNNIIRLSPALNITEQELREGLDIIINTIN 235 (242)
Q Consensus 206 ~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~ 235 (242)
-..+.|++.+..++.|+++++++.+.+.-+
T Consensus 472 ~e~r~R~c~Sa~ht~e~ld~~l~~i~~~g~ 501 (519)
T KOG1357|consen 472 LESRARFCLSASHTKEDLDRALEVIDRVGD 501 (519)
T ss_pred HHhHHHhhhcccccHHHHHHHHHHHhhhch
Confidence 246789999999999999999999877653
No 248
>PLN02242 methionine gamma-lyase
Probab=99.71 E-value=1.9e-16 Score=135.53 Aligned_cols=215 Identities=14% Similarity=0.153 Sum_probs=139.5
Q ss_pred cccCCCChhh-hcCCCC-CEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCC
Q psy6548 5 FPVKSKQVPA-KLKSNP-NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVR 82 (242)
Q Consensus 5 ~~~~~~d~~~-~~~~~~-~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~ 82 (242)
..++.+|++. +...+. ++++|+++.++|++|.+.+ +++|+++|++||+++|+|++|..+. .. + ..++
T Consensus 145 ~~~d~~d~e~l~~~i~~~~tklV~lesp~NPtG~v~d----l~~I~~la~~~gi~livDea~~~~~-~~-~---~~~g-- 213 (418)
T PLN02242 145 TFVDITDLEAVKKAVVPGKTKVLYFESISNPTLTVAD----IPELARIAHEKGVTVVVDNTFAPMV-LS-P---ARLG-- 213 (418)
T ss_pred EEcCCCCHHHHHHhcCcCCCEEEEEecCCCCCCcccC----HHHHHHHHHHhCCEEEEECCCCccC-CC-H---HHcC--
Confidence 3456667877 444444 6999999999999997774 9999999999999999999996432 11 1 1123
Q ss_pred CCEEE--eecccc-CCccc-hheeEeChhhhhccCCCCCC--CCCCCCHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHH
Q psy6548 83 PDIVI--LGKALS-GGLYP-ISAVLADDEVMGTLVPGTHG--STYGGNPLACKLAMTALDVILE-ENMIENAYKMGEIFR 155 (242)
Q Consensus 83 ~~~~~--~sK~~~-~g~~~-~g~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~~a~a~l~~~~~-~~~~~~~~~~~~~l~ 155 (242)
.|+++ +||+++ +| .+ .||+++++++++.+.....+ ...+.++..+.+++.+.. ++. +...++.+++++.+.
T Consensus 214 ~divv~S~SK~l~g~g-~~~gG~iv~~~~li~~l~~~~~~~~~~~g~~~~~~~A~l~~~~-l~tl~~r~~~~~~~a~~la 291 (418)
T PLN02242 214 ADVVVHSISKFISGGA-DIIAGAVCGPAELVNSMMDLHHGALMLLGPTMNPKVAFELSER-LPHLSLRMKEHCRRAMEYA 291 (418)
T ss_pred CcEEEEeCccccCCCC-CceEEEEEcCHHHHHHHHHHhhhhhhccCCCCCHHHHHHHHcC-CCcHHHHHHHHHHHHHHHH
Confidence 46555 889998 45 55 58899998888877654232 122333444444443332 211 234567888999999
Q ss_pred HHHHhhcCCCCC-----C---------eE---eeeceeEEEEecCCchhHHHHHHHHHHC----CceeccC---------
Q psy6548 156 SELRSRLSPDIV-----P---------VV---RGKGLLNAIVLDKSILEVYDVCIKMKDA----GLVTKPI--------- 205 (242)
Q Consensus 156 ~~l~~~l~~~~~-----~---------~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~----gi~~~~~--------- 205 (242)
+.| +..+..+. . .. .+.|.++.|++... ..+..|++.|.-- .+.++.+
T Consensus 292 ~~L-~~~~~~V~yP~l~~~p~~~~~~~~~~~~~g~g~~~sf~l~~~-~~~~~f~~~l~~~~~~~~~~~slG~~~sl~~~p 369 (418)
T PLN02242 292 KRM-KELGLKVIYPGLEDHPQHALLKSMANKGYGFGGLLCLDMDTE-ERANRLMRYLQNSTQFGFMAVSLGYYETLMSCS 369 (418)
T ss_pred HHH-HhCCCEEECCCCCCCccHHHHHHhcccCCCceeEEEEEECCH-HHHHHHHHHhhcccccceeeecCCCCCceeeCC
Confidence 999 65542110 0 01 24577889999653 5677788887621 1122111
Q ss_pred ------------------CCCEEEEeccCcCCHHH-HHHHHHHHHHHHHHHh
Q psy6548 206 ------------------SNNIIRLSPALNITEQE-LREGLDIIINTINTMA 238 (242)
Q Consensus 206 ------------------~~~~lR~~~~~~~t~e~-i~~~~~~l~~~l~~~~ 238 (242)
..+.+|++ ...|+ .+.+++.|+++++.++
T Consensus 370 ~~~~~~~~~~~~~~~~gi~~~liRls----vGlE~~~~dli~dl~~al~~~~ 417 (418)
T PLN02242 370 GSSTSSELDPEEKAAAGISPGLVRMS----VGYTGTLEQRWSQFEKALSAMK 417 (418)
T ss_pred CccccccCCHHHHHhcCCCCCeEEEE----ecCCCCHHHHHHHHHHHHHHhh
Confidence 24689999 44564 8888888888888764
No 249
>PRK06460 hypothetical protein; Provisional
Probab=99.71 E-value=4e-16 Score=132.13 Aligned_cols=216 Identities=14% Similarity=0.160 Sum_probs=137.8
Q ss_pred ccccCCCChhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCC
Q psy6548 4 QFPVKSKQVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVR 82 (242)
Q Consensus 4 ~~~~~~~d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~ 82 (242)
+..+|.++.+. +.+.++++++|++++++|++|.+.+ +++|+++|++||+++|+||+|.... ... .....
T Consensus 112 v~~~~~~~~~~l~~~~~~~tklV~l~sp~NPtG~v~d----~~~I~~la~~~g~~vivDea~~~~~-~~~-----~l~~~ 181 (376)
T PRK06460 112 VDASNPGSDNIIEKAKSKRYDVVFVENITNPLLRVVD----ITELSKVCKENGSILIVDATFSTPI-NQK-----PLELG 181 (376)
T ss_pred EEEECCCCHHHHHHhcCCCceEEEEECCCCCCCcccC----HHHHHHHHHHcCCEEEEECCcCccc-cCC-----hhhcC
Confidence 34456665444 5555678999999999999997776 7889999999999999999986321 111 11123
Q ss_pred CCEEE--eeccccC--CccchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Q psy6548 83 PDIVI--LGKALSG--GLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSEL 158 (242)
Q Consensus 83 ~~~~~--~sK~~~~--g~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l 158 (242)
.|+++ +||+++| + .++|++++++++++.+.........+.++..+..++..++.++ ...+++.+++.++.+.|
T Consensus 182 ~divv~S~sK~l~G~~~-~~~G~~~~~~~l~~~l~~~~~~~g~~~~~~~a~~~l~~~~~l~--~r~~~~~~n~~~l~~~L 258 (376)
T PRK06460 182 ADIVVHSASKFLAGHND-VIAGLAAGYGKLLNVIDQMRRTLGTSLDPHAAYLTLRGIKTLK--IRMDVINRNAEQIAEFL 258 (376)
T ss_pred CCEEEeecceeccCCCC-ceEEEEecCHHHHHHHHHHHHhcCCCCCHHHHHHHHhchhhHH--HHHHHHHHHHHHHHHHH
Confidence 46655 7899974 3 4689999999888877653323333344444333333344433 35677888999999999
Q ss_pred HhhcCCC-------CCC---------eEeeeceeEEEEecCCchhHHHHHHHHHH--CCcee--------ccC-------
Q psy6548 159 RSRLSPD-------IVP---------VVRGKGLLNAIVLDKSILEVYDVCIKMKD--AGLVT--------KPI------- 205 (242)
Q Consensus 159 ~~~l~~~-------~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~gi~~--------~~~------- 205 (242)
++.+.. ... ...+.|.++.|++..+...+..|.+.|.- .+.-+ .|.
T Consensus 259 -~~~p~v~~v~yp~l~~~p~~~~~~~~~~g~gg~~s~~~~~~~~~~~~~~~~l~~~~~~~s~Gg~~sl~~~p~~~~~~~~ 337 (376)
T PRK06460 259 -EGHPKVVKVYYPGLKSHVDYEIARRVLKGFGGVLSFEVNGGQESALKVMKSLKLIIPAQTLGGVNSVISHPATMSHRTL 337 (376)
T ss_pred -HcCCCccEEECCCCCCCccHHHHHhhCCCCceEEEEEEcCcHHHHHHHHHhCCcceeccCCCCCceEEeCccccccccC
Confidence 554420 111 11345788999987542445566666631 11111 110
Q ss_pred ----------CCCEEEEeccCcCCHHHHHHHHHHHHHHHHHH
Q psy6548 206 ----------SNNIIRLSPALNITEQELREGLDIIINTINTM 237 (242)
Q Consensus 206 ----------~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~ 237 (242)
..+.+|++ ...|+.+.+++.|+++++.+
T Consensus 338 ~~~~~~~~gi~~~liR~s----vGlE~~~dl~~dl~~al~~~ 375 (376)
T PRK06460 338 SLEERKIVGITDSLLRLS----VGIEDVNDLIEDLDRALSTL 375 (376)
T ss_pred CHHHHHhcCCCCCeEEEE----eccCCHHHHHHHHHHHHHhh
Confidence 24689999 45567788888888887654
No 250
>KOG1358|consensus
Probab=99.71 E-value=5.9e-16 Score=125.70 Aligned_cols=226 Identities=19% Similarity=0.212 Sum_probs=156.8
Q ss_pred ccccccCCCChhh--hcCCCCC------------EEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEecccc-c
Q psy6548 2 SLQFPVKSKQVPA--KLKSNPN------------ICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQT-G 66 (242)
Q Consensus 2 ~~~~~~~~~d~~~--~~~~~~~------------~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~-~ 66 (242)
|.++.|.|||.+. +.+.+.. .+.|++|+.+.|+|+++| +++|.++..+|...+|.||.++ |
T Consensus 200 S~i~~Fkhndm~~lerll~E~~~~~~K~~k~~~~Rrfiv~EGl~~N~g~i~p----l~~iv~lk~Kyk~RvildEs~SfG 275 (467)
T KOG1358|consen 200 STISYFKHNDMEDLERLLPEQEDEDQKNPKKALTRRFIVVEGLYANTGDICP----LPEIVKLKNKYKFRVILDESLSFG 275 (467)
T ss_pred heeEEecCCCHHHHHHhccCcchhhhhccccccceEEEEEEeeccCCCcccc----cHHHHHHHhhheEEEEEecccccc
Confidence 5678999999999 4443322 678999999999999998 8999999999999999999994 3
Q ss_pred -cCccCcccccccCCCC---CCEEEee--ccccCCccchheeEeChhhhhccCCCCCCCCCCC--CHHHHHHHHHHHHHH
Q psy6548 67 -LGRTGKLLAIHYEDVR---PDIVILG--KALSGGLYPISAVLADDEVMGTLVPGTHGSTYGG--NPLACKLAMTALDVI 138 (242)
Q Consensus 67 -~~~~g~~~~~~~~~~~---~~~~~~s--K~~~~g~~~~g~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~a~a~l~~~ 138 (242)
+|.+|.+ ...++++. .|+++.| -+++. ..|++.|+.-+.++-+-...++.|+. +|....+|..++..+
T Consensus 276 ~lg~~GrG-vteH~~v~~~~iDiv~~sm~~alas---~GgFc~G~~~i~~hQrLSg~~Y~fSAslPp~la~aa~~ai~i~ 351 (467)
T KOG1358|consen 276 VLGKTGRG-VTEHFGVPITDIDIVTASMETALAS---GGGFCAGKSFIADHQRLSGSGYCFSASLPPYLAGAAIKAILIE 351 (467)
T ss_pred cccccCcc-ccccCCCCccceeeeeecccccccc---cCceeecceeeEeeeeccccceeeeccCchhhhhhHHHHHHHH
Confidence 5677765 44777774 3566643 45652 23556665443333222235556654 455555666677666
Q ss_pred Hh-ccHHHHHHHHHHHHHHHHHhhcCCCCCCeEeeeceeEEEEecCCc-------hhHHHHHHHHHHCCceeccC-----
Q psy6548 139 LE-ENMIENAYKMGEIFRSELRSRLSPDIVPVVRGKGLLNAIVLDKSI-------LEVYDVCIKMKDAGLVTKPI----- 205 (242)
Q Consensus 139 ~~-~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~l~~~gi~~~~~----- 205 (242)
+. +++.+.++.....+...| +... .+.......++++-+.+.+.. ...+++++.++.+|+.+...
T Consensus 352 ~~~p~~~~~L~~k~~~~H~~l-~~~s-~~~v~~~~~SPi~hl~l~~~~~s~e~e~~lL~eivd~~i~~~~ll~~a~~~~~ 429 (467)
T KOG1358|consen 352 EWNPEIVQPLRAKVAKFHAAL-SSNS-GFIVSGSPESPIIHLQLERSYGSREKEEKLLEEIVDKCIAEGVLLTRAKYLEK 429 (467)
T ss_pred hhCcchhhhhhccccccchhh-hcCC-ceEEecCcCCceeeeeecccccchHHHHHHHHHHHHHHHhhcceehhhhhhhh
Confidence 54 567777888777777777 4422 112222334566666665522 44678889988888888532
Q ss_pred -----CCCEEEEeccCcCCHHHHHHHHHHHHHHHHHH
Q psy6548 206 -----SNNIIRLSPALNITEQELREGLDIIINTINTM 237 (242)
Q Consensus 206 -----~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~ 237 (242)
-+..+|++++..+++||++++...|+++...+
T Consensus 430 ~e~~~~~pSiri~~~a~~seeel~ra~~~ik~~~~~~ 466 (467)
T KOG1358|consen 430 LERCPIPPSIRICVSAGMSEEELERAAELIKEVASAV 466 (467)
T ss_pred cccCCCCCcEEEEEeCCCCHHHHHHHHHHHHHHHHhh
Confidence 25689999999999999999999999887654
No 251
>PRK00011 glyA serine hydroxymethyltransferase; Reviewed
Probab=99.70 E-value=1.5e-15 Score=130.72 Aligned_cols=213 Identities=15% Similarity=0.180 Sum_probs=133.3
Q ss_pred Chhh--hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEecccc-ccCccCcccccccCCCCCCEEE
Q psy6548 11 QVPA--KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQT-GLGRTGKLLAIHYEDVRPDIVI 87 (242)
Q Consensus 11 d~~~--~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~-~~~~~g~~~~~~~~~~~~~~~~ 87 (242)
|+++ +.+.+++++++++.+. +.|...+ +++|.++|++||+++|+|++|. |+...|.. . ...+ ..|+++
T Consensus 153 d~~~l~~~i~~~~~k~v~~~~~--~~~~~~~----~~~I~~la~~~~~~livD~a~~~g~~~~g~~-~-~~~~-~~di~~ 223 (416)
T PRK00011 153 DYDEVEKLALEHKPKLIIAGAS--AYSRPID----FKRFREIADEVGAYLMVDMAHIAGLVAAGVH-P-SPVP-HADVVT 223 (416)
T ss_pred CHHHHHHHHHhcCCCEEEECCC--cCCCccC----HHHHHHHHHHcCCEEEEECcchhcccccCcc-C-CCCC-CCcEEE
Confidence 4444 3344457777777532 3343333 8999999999999999999984 32111210 1 1112 346655
Q ss_pred --eeccccCCccchheeEeC-hhhhhccCCCCCCCCCCCC-HHHHHHHHHH-HHHHHh--ccHHHHHHHHHHHHHHHHHh
Q psy6548 88 --LGKALSGGLYPISAVLAD-DEVMGTLVPGTHGSTYGGN-PLACKLAMTA-LDVILE--ENMIENAYKMGEIFRSELRS 160 (242)
Q Consensus 88 --~sK~~~~g~~~~g~~~~~-~~~~~~l~~~~~~~~~~~~-~~~~~~a~a~-l~~~~~--~~~~~~~~~~~~~l~~~l~~ 160 (242)
++|+++ | .+.|+++++ +++++.++.....+.++.+ ...+++...+ .+.+.. +++.++++++++++++.| +
T Consensus 224 ~S~~K~l~-g-~~gg~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~aa~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L-~ 300 (416)
T PRK00011 224 TTTHKTLR-G-PRGGLILTNDEELAKKINSAVFPGIQGGPLMHVIAAKAVAFKEALEPEFKEYAQQVVKNAKALAEAL-A 300 (416)
T ss_pred ecCCcCCC-C-CCceEEEeCCHHHHHHHHHHhCccccCCccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH-H
Confidence 779995 4 678899885 6787777643322222222 2233332333 333322 446788889999999999 6
Q ss_pred hcCCCCCCeEeeeceeEEEEecCCchhHHHHHHHHHHCCceecc----C------CCCEEEEecc----CcCCHHHHHHH
Q psy6548 161 RLSPDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKP----I------SNNIIRLSPA----LNITEQELREG 226 (242)
Q Consensus 161 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~----~------~~~~lR~~~~----~~~t~e~i~~~ 226 (242)
.++-.+.. ....++++++.+++...+..++.+.|.++||.+.. . .++.+|++.. ..++++|++++
T Consensus 301 ~~g~~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~L~~~GI~v~~~~~p~~~~~~~~~~~~Ri~~~~~~~~~~t~~di~~l 379 (416)
T PRK00011 301 ERGFRVVS-GGTDNHLVLVDLRSKGLTGKEAEAALEEANITVNKNAVPFDPRSPFVTSGIRIGTPAITTRGFKEAEMKEI 379 (416)
T ss_pred hCCCeeee-cCCCCeEEEEeCcccCCCHHHHHHHHHHcCcEEccCcCCCCCCCCCCCCceEecCHHHhhcCcCHHHHHHH
Confidence 65421111 11234778888764323567899999999999973 1 2456999642 25689999999
Q ss_pred HHHHHHHHHH
Q psy6548 227 LDIIINTINT 236 (242)
Q Consensus 227 ~~~l~~~l~~ 236 (242)
++.|+++++.
T Consensus 380 ~~~l~~~~~~ 389 (416)
T PRK00011 380 AELIADVLDN 389 (416)
T ss_pred HHHHHHHHhc
Confidence 9999988765
No 252
>cd06452 SepCysS Sep-tRNA:Cys-tRNA synthase. This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Cys-tRNA(Cys) is produced by O-phosphoseryl-tRNA synthetase which ligates O-phosphoserine (Sep) to tRNA(Cys), and Sep-tRNA:Cys-tRNA synthase (SepCysS) converts Sep-tRNA(Cys) to Cys-tRNA(Cys), in methanogenic archaea. SepCysS forms a dimer, each monomer is composed of a large and small domain; the larger, a typical pyridoxal 5'-phosphate (PLP)-dependent-like enzyme fold. In the active site of each monomer, PLP is covalently bound to a conserved Lys residue near the dimer interface.
Probab=99.70 E-value=6.8e-16 Score=130.40 Aligned_cols=203 Identities=14% Similarity=0.145 Sum_probs=127.5
Q ss_pred CCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEE--eeccccCCcc
Q psy6548 20 PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVI--LGKALSGGLY 97 (242)
Q Consensus 20 ~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~--~sK~~~~g~~ 97 (242)
+++++++++++++++|...+ +++|.++|++||+++|+|++|. ++.. ++....++ .|+++ ++|+++++ .
T Consensus 138 ~~~~lv~l~~p~n~tG~~~~----~~~i~~~~~~~~~~vivD~a~~-~g~~--~~~~~~~~--~d~~~~s~~K~l~~~-~ 207 (361)
T cd06452 138 KPPALALLTHVDGNYGNLHD----AKKIAKVCHEYGVPLLLNGAYT-VGRM--PVSGKELG--ADFIVGSGHKSMAAS-A 207 (361)
T ss_pred CCceEEEEECCCCCCeeecc----HHHHHHHHHHcCCeEEEECCcc-cCCc--CCCHHHcC--CCEEEecCCccccCC-C
Confidence 47889999999999996654 8999999999999999999996 2211 12222233 35555 77999977 7
Q ss_pred chheeEeChhhhhccCCCCCCC------CC--CCCHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHhhcCC-CCC
Q psy6548 98 PISAVLADDEVMGTLVPGTHGS------TY--GGNPLACKLAMTALDVILE-ENMIENAYKMGEIFRSELRSRLSP-DIV 167 (242)
Q Consensus 98 ~~g~~~~~~~~~~~l~~~~~~~------~~--~~~~~~~~~a~a~l~~~~~-~~~~~~~~~~~~~l~~~l~~~l~~-~~~ 167 (242)
++|++++++++++.+....... .+ +.+...+.++.++++.+.. -....+..++.+++++.| +.++. ...
T Consensus 208 ~~G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~L-~~l~g~~v~ 286 (361)
T cd06452 208 PIGVLATTEEWADIVFRTSQMFKIKEVELLGCTLRGAPLVTLMASFPHVKERVKRWDEEVEKARWFVAEL-EKIEGIKQL 286 (361)
T ss_pred CeEEEEECHHHHHHHhccccccccceeeeeccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCCCeEEE
Confidence 8999999998888876532110 01 1112233344455554322 112222334457788888 66631 111
Q ss_pred CeEeeeceeEEEEecCC-------chhHHHHHHHHHHCCceeccC-CCCEEEEeccCcCCHHHHHHHHHHHHHHH
Q psy6548 168 PVVRGKGLLNAIVLDKS-------ILEVYDVCIKMKDAGLVTKPI-SNNIIRLSPALNITEQELREGLDIIINTI 234 (242)
Q Consensus 168 ~~~~~~~~~~~~~~~~~-------~~~~~~~~~~l~~~gi~~~~~-~~~~lR~~~~~~~t~e~i~~~~~~l~~~l 234 (242)
........++.++.+.- .....++.++|.++||.+... ..+.+|++. ..+++|+++.+++.|+++.
T Consensus 287 ~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gI~~~~~~~~~~~ri~~-~g~~~e~~~~l~~al~~~~ 360 (361)
T cd06452 287 GEKPKNHDLMFFETPSFDEIAKKHKRRGYFLYSELKKRGIHGIKPGLTRYFKLST-YGLTWEQVEYVVDAFKEIA 360 (361)
T ss_pred CCCCCCCceEEEEcCCcchhhhhccccchhHHHHHHHcCceEEcCCCceEEEEEe-cCCCHHHHHHHHHHHHHHh
Confidence 11123445566655421 012346999999999997433 345788875 3369999999999998654
No 253
>cd00614 CGS_like CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis. This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life.
Probab=99.69 E-value=3.5e-16 Score=132.40 Aligned_cols=214 Identities=14% Similarity=0.117 Sum_probs=138.7
Q ss_pred ccccCCCChhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCC
Q psy6548 4 QFPVKSKQVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVR 82 (242)
Q Consensus 4 ~~~~~~~d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~ 82 (242)
+..++++|+++ +...++++++|++|+++|++|.+.+ +++|+++|++||+++|+|++|.... .. ......
T Consensus 107 ~~~v~~~d~~~l~~~i~~~~~~v~~e~~~np~g~~~d----l~~i~~la~~~g~~livD~t~~~~~-~~-----~~~~~g 176 (369)
T cd00614 107 VTFVDPDDPEALEAAIKPETKLVYVESPTNPTLKVVD----IEAIAELAHEHGALLVVDNTFATPY-LQ-----RPLELG 176 (369)
T ss_pred EEEeCCCCHHHHHHhcCCCCeEEEEECCCCCCCeecC----HHHHHHHHHHcCCEEEEECCCcchh-cC-----ChhhhC
Confidence 44578888888 5544558999999999999997776 9999999999999999999985211 11 112334
Q ss_pred CCEEE--eeccccC-CccchheeEeCh-hhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Q psy6548 83 PDIVI--LGKALSG-GLYPISAVLADD-EVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSEL 158 (242)
Q Consensus 83 ~~~~~--~sK~~~~-g~~~~g~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l 158 (242)
.|+++ ++|.++| |-.++|++++++ ++++.++..........++..+..+...++.+ +...++..+++.++.+.|
T Consensus 177 ~Divv~S~tK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~g~~~~p~~a~~~l~~l~tl--~~r~~~~~~na~~la~~L 254 (369)
T cd00614 177 ADIVVHSATKYIGGHSDVIAGVVVGSGEALIQRLRFLRLALGTILSPFDAWLLLRGLKTL--PLRMERHSENALKVAEFL 254 (369)
T ss_pred CcEEEeccceeccCCCCceEEEEEeCcHHHHHHHHHHHHhhCCCCCHHHHHHHHcCCCCH--HHHHHHHHHHHHHHHHHH
Confidence 57775 7899984 215688999876 77777765322223345666655554444433 234567778888899999
Q ss_pred HhhcCCC----CC---C---------eEeeeceeEEEEecCCchhHHHHHHHHHHCCceec----------cC-------
Q psy6548 159 RSRLSPD----IV---P---------VVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTK----------PI------- 205 (242)
Q Consensus 159 ~~~l~~~----~~---~---------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~----------~~------- 205 (242)
+..+.. .+ . ...+.|.++.|.+......+..|.+.|.--.+.++ |.
T Consensus 255 -~~~~~v~~V~~p~l~~~~~~~~~~~~~~g~g~i~s~~l~~~~~~~~~f~~~l~~~~~~~s~G~~~sl~~~~~~~~~~~~ 333 (369)
T cd00614 255 -EKHPKVERVYYPGLPSHPQHELAKKQMSGYGGVFSFELKGGLEAAKKFLNALKLFSLAVSLGGVESLVEHPASMTHSQL 333 (369)
T ss_pred -HcCCCccEEECCCCCCCchHHHHHHhcCCCceEEEEEeCCCHHHHHHHHHcCCcceEcccCCCCceeeeCCcccccccC
Confidence 665521 01 0 11345788889886432455666666642221111 10
Q ss_pred ----------CCCEEEEeccCcCCHHHHHHHHHHHHHHH
Q psy6548 206 ----------SNNIIRLSPALNITEQELREGLDIIINTI 234 (242)
Q Consensus 206 ----------~~~~lR~~~~~~~t~e~i~~~~~~l~~~l 234 (242)
.++.+|+++.+ |+.+.+++.|++++
T Consensus 334 ~~~~~~~~g~~~~liR~svGl----E~~~dl~~dl~~al 368 (369)
T cd00614 334 PPEERAAAGITPGLVRLSVGI----EDVEDLIADLEQAL 368 (369)
T ss_pred CHHHHHhcCCCCCeEEEEeCc----CCHHHHHHHHHHhh
Confidence 24689999443 67788888887765
No 254
>PLN02651 cysteine desulfurase
Probab=99.68 E-value=1.9e-15 Score=127.80 Aligned_cols=198 Identities=17% Similarity=0.209 Sum_probs=135.4
Q ss_pred Chhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEEee
Q psy6548 11 QVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILG 89 (242)
Q Consensus 11 d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~s 89 (242)
|+++ +...+++++++++..+++++|.+.| +++|.++|++||+++++|.+|+ +|.. ++.++ ....|++++|
T Consensus 127 d~~~l~~~i~~~t~lv~v~~~~n~tG~~~~----l~~I~~~~~~~g~~~~vD~a~~-~g~~--~~~~~--~~~~D~~~~s 197 (364)
T PLN02651 127 DLDELAAAIRPDTALVSVMAVNNEIGVIQP----VEEIGELCREKKVLFHTDAAQA-VGKI--PVDVD--DLGVDLMSIS 197 (364)
T ss_pred CHHHHHHhcCCCcEEEEEECCCCCceeccc----HHHHHHHHHHcCCEEEEEcchh-hCCc--ccCcc--cCCCCEEEec
Confidence 4555 4444567999999999999998776 9999999999999999999996 2211 22223 3346888865
Q ss_pred --ccccCCccchheeEeChhhhhccCCCCCCC-------CCCCCHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHH
Q psy6548 90 --KALSGGLYPISAVLADDEVMGTLVPGTHGS-------TYGGNPLACKLAMTALDVILE--ENMIENAYKMGEIFRSEL 158 (242)
Q Consensus 90 --K~~~~g~~~~g~~~~~~~~~~~l~~~~~~~-------~~~~~~~~~~~a~a~l~~~~~--~~~~~~~~~~~~~l~~~l 158 (242)
|+ +|+ .++|+++.+++..+.+.+...++ ..+.+..++.+..++++.+.. +.+.++.+++.+++++.|
T Consensus 198 ~hK~-~gp-~G~g~l~v~~~~~~~l~p~~~g~~~~~~~~~GT~~~~~~~~l~~al~~~~~~~~~i~~~~~~l~~~l~~~l 275 (364)
T PLN02651 198 GHKI-YGP-KGVGALYVRRRPRVRLEPLMSGGGQERGRRSGTENTPLVVGLGAACELAMKEMDYDEKHMKALRERLLNGL 275 (364)
T ss_pred hhhh-CCC-CceEEEEEcCCCCCCCCccccCCCccCCccCCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 95 555 67899988888777776543221 123455666666777887754 345678888888888888
Q ss_pred Hhh-cCC-CCCC--eEe-eeceeEEEEecCCchhHHHHHHHHHHCCceeccCC-----------------------CCEE
Q psy6548 159 RSR-LSP-DIVP--VVR-GKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPIS-----------------------NNII 210 (242)
Q Consensus 159 ~~~-l~~-~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~-----------------------~~~l 210 (242)
++ ++. .+.. ... ....++.|.++. .+.+++.++|.+ |.++.+. .+.+
T Consensus 276 -~~~~~~~~i~~~~~~~~~~~~i~~~~~~~--~~~~~~~~~L~~--i~v~~g~~c~~~~~~~~~~~~~~g~~~~~~~~~v 350 (364)
T PLN02651 276 -RAKLGGVRVNGPRDPEKRYPGTLNLSFAY--VEGESLLMGLKE--VAVSSGSACTSASLEPSYVLRALGVPEEMAHGSL 350 (364)
T ss_pred -HhhCCCEEEECCCCcccCcCCEEEEEeCC--CCHHHHHHHhCC--EEEEchhhcCCCCCCcCHHHHHcCCChHHhCceE
Confidence 43 332 1111 111 123466677764 467888888854 7774321 3689
Q ss_pred EEeccCcCCHHHHH
Q psy6548 211 RLSPALNITEQELR 224 (242)
Q Consensus 211 R~~~~~~~t~e~i~ 224 (242)
|++++.++|++|||
T Consensus 351 R~S~~~~~t~~did 364 (364)
T PLN02651 351 RLGVGRFTTEEEVD 364 (364)
T ss_pred EEEcCCCCCHHHcC
Confidence 99999999999975
No 255
>PRK03080 phosphoserine aminotransferase; Provisional
Probab=99.67 E-value=1e-14 Score=123.86 Aligned_cols=203 Identities=11% Similarity=-0.003 Sum_probs=139.4
Q ss_pred EEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEEee--ccccCCccch
Q psy6548 22 ICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILG--KALSGGLYPI 99 (242)
Q Consensus 22 ~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~s--K~~~~g~~~~ 99 (242)
++.|.+..+.+.+|.+.| +++|++ ++||+++++|.+++ +|. .++.++ . .|++++| |+++++ .++
T Consensus 137 ~~~V~~~h~~t~tG~~~p----i~~I~~--~~~g~~~vVDa~qs-~G~--~pidv~--~--iD~~~~s~~K~l~~P-~G~ 202 (378)
T PRK03080 137 DRDVVFTWNGTTTGVRVP----VARWIG--ADREGLTICDATSA-AFA--LPLDWS--K--LDVYTFSWQKVLGGE-GGH 202 (378)
T ss_pred CCCEEEEecCCccceecc----chhhcc--ccCCCeEEEecccc-ccc--CCCCHH--H--CcEEEEehhhhCCCC-Cce
Confidence 455888889999998887 778878 78999999999986 321 222222 2 4888866 999977 789
Q ss_pred heeEeChhhhhccCCCCC----------------------CCCCC-CCHHHHHHHHHHHHHHHhc-c---HHHHHHHHHH
Q psy6548 100 SAVLADDEVMGTLVPGTH----------------------GSTYG-GNPLACKLAMTALDVILEE-N---MIENAYKMGE 152 (242)
Q Consensus 100 g~~~~~~~~~~~l~~~~~----------------------~~~~~-~~~~~~~~a~a~l~~~~~~-~---~~~~~~~~~~ 152 (242)
|+++.+++.++.+.+... .++.. .+..+..+..++++.+.+. + +.++.+++.+
T Consensus 203 g~l~v~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~tp~i~~i~~l~~al~~l~~~gG~e~i~~r~~~l~~ 282 (378)
T PRK03080 203 GMAILSPRAVERLESYTPARPIPKFFRLTKGGKAIENSFKGQTINTPSMLTVEDYLDQLDWANSIGGLDALIARTAANAS 282 (378)
T ss_pred EEEEECHHHHHhhhcccCCCCCchhheeccchHHhhhhhcCCcccCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999998877765311 11222 2233455556788877653 3 4567777888
Q ss_pred HHHHHHHhhcCC-CCCC-eEe-eeceeEEEEecCCc-hhHHHHHHHHHHCCceeccCC----CCEEEEeccCcCCHHHHH
Q psy6548 153 IFRSELRSRLSP-DIVP-VVR-GKGLLNAIVLDKSI-LEVYDVCIKMKDAGLVTKPIS----NNIIRLSPALNITEQELR 224 (242)
Q Consensus 153 ~l~~~l~~~l~~-~~~~-~~~-~~~~~~~~~~~~~~-~~~~~~~~~l~~~gi~~~~~~----~~~lR~~~~~~~t~e~i~ 224 (242)
++++.| ++++. .... ... ..+.++.+.+++.. ....++...|.++|+++..++ .+.+|++++.+++++|++
T Consensus 283 ~l~~~l-~~~~~~~~~~~~~~~~s~~i~~~~~~~~~~~~~~~~~~~l~~~~i~v~~g~~~~~~~~vRis~~~~~t~~di~ 361 (378)
T PRK03080 283 VLYDWA-EKTPWATPLVADPATRSNTSVTLDFVDAQAAVDAAAVAKLLRENGAVDIEPYRDAPNGLRIWCGPTVEPADVE 361 (378)
T ss_pred HHHHHH-HhCCCcccccCCccccCccEEEEEcCCchHHHHHHHHHHHHHcCCeeccccccCCCCcEEEecCCCCCHHHHH
Confidence 888888 66652 1211 111 22346677766510 123346777778888886532 478999999999999999
Q ss_pred HHHHHHHHHHHHHhh
Q psy6548 225 EGLDIIINTINTMAA 239 (242)
Q Consensus 225 ~~~~~l~~~l~~~~~ 239 (242)
++++.|++++++++.
T Consensus 362 ~l~~al~~~~~~~~~ 376 (378)
T PRK03080 362 ALTPWLDWAFERLKA 376 (378)
T ss_pred HHHHHHHHHHHHHhh
Confidence 999999998887643
No 256
>PLN03226 serine hydroxymethyltransferase; Provisional
Probab=99.67 E-value=1.2e-14 Score=126.05 Aligned_cols=216 Identities=12% Similarity=0.045 Sum_probs=141.4
Q ss_pred ccCCC------Chhh--hcCCCCCEEEEEE-cccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccc-cccCcc-Cccc
Q psy6548 6 PVKSK------QVPA--KLKSNPNICAFMV-EPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQ-TGLGRT-GKLL 74 (242)
Q Consensus 6 ~~~~~------d~~~--~~~~~~~~~~i~~-e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~-~~~~~~-g~~~ 74 (242)
.|+|| |+++ +.+.+.+++.|++ ++++++.+ + +++|+++|++||+++++|++| .|+... +...
T Consensus 160 ~y~~~~~~g~iD~d~Le~~l~~~~pklIv~~~S~~s~~~---D----~a~i~~ia~~~ga~LlvD~AH~~Gli~~~~~~~ 232 (475)
T PLN03226 160 PYRLDESTGLIDYDKLEKKAMLFRPKLIIAGASAYPRDW---D----YARMRKIADKVGALLMCDMAHISGLVAAQEAAS 232 (475)
T ss_pred eeeecCCCCCcCHHHHHHHHhhcCCeEEEEecCcCCCcc---C----HHHHHHHHHHcCCEEEEEchhhhCcccCCCCCC
Confidence 56778 8888 4455555666655 55554433 2 789999999999999999999 443222 1111
Q ss_pred ccccCCCCCCEEE--eeccccCCccchheeEeChhhh-----------hc---cCCC-CCCCCCCCCHHHHHHHHHHHHH
Q psy6548 75 AIHYEDVRPDIVI--LGKALSGGLYPISAVLADDEVM-----------GT---LVPG-THGSTYGGNPLACKLAMTALDV 137 (242)
Q Consensus 75 ~~~~~~~~~~~~~--~sK~~~~g~~~~g~~~~~~~~~-----------~~---l~~~-~~~~~~~~~~~~~~~a~a~l~~ 137 (242)
. .+ ..|+++ ++|+|.|+ .+ |+++++++.+ +. +... ......+.++...++..++++.
T Consensus 233 p---~~-~~Div~~t~hK~L~GP-~G-g~I~~~~~~~~~~~~g~~~~~d~~~~i~~a~~~~~~g~p~~~~iaal~aAl~~ 306 (475)
T PLN03226 233 P---FE-YCDVVTTTTHKSLRGP-RG-GMIFFRKGPKPPKGQGEGAVYDYEDKINFAVFPGLQGGPHNHTIAALAVALKQ 306 (475)
T ss_pred C---CC-CCeEEEecCcccccCC-Cc-eEEEEchhhcccccCCCccHHHHHHHhccccCCccCCCchHHHHHHHHHHHHH
Confidence 1 11 367766 67999765 43 7787776543 11 2211 1112223345555556667887
Q ss_pred HHhc---cHHHHHHHHHHHHHHHHHhhcCCCCCCeEeeeceeEEEEecCCchhHHHHHHHHHHCCceeccC---------
Q psy6548 138 ILEE---NMIENAYKMGEIFRSELRSRLSPDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPI--------- 205 (242)
Q Consensus 138 ~~~~---~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~--------- 205 (242)
+.+. .+.+++.++.+++++.| ++.+-.+.... ....++++++...+.+..++.+.|.+.||.+..+
T Consensus 307 i~~~~~~~~~~~~~~na~~L~~~L-~~~G~~l~~~~-t~~hi~lv~~~~~gi~~~~~~~~L~~~~I~~nk~~~p~~~~~~ 384 (475)
T PLN03226 307 AMTPEFKAYQKQVKANAAALANRL-MSKGYKLVTGG-TDNHLVLWDLRPLGLTGSRVEKVLDLAHITLNKNAVPGDSSAL 384 (475)
T ss_pred HhCcCHHHHHHHHHHHHHHHHHHH-HhCCCEEEcCC-CCCCEEEEEccCCCCCHHHHHHHHHHCCCEECCCCCCCCcccC
Confidence 7653 36788899999999999 66542222111 1246777777443356778889999999999643
Q ss_pred CCCEEEE----eccCcCCHHHHHHHHHHHHHHHHH
Q psy6548 206 SNNIIRL----SPALNITEQELREGLDIIINTINT 236 (242)
Q Consensus 206 ~~~~lR~----~~~~~~t~e~i~~~~~~l~~~l~~ 236 (242)
.++.+|+ ..+..++++|++++.+.|.++++.
T Consensus 385 ~~~giRiGt~~lt~~g~~~~d~~~ia~~i~~~~~~ 419 (475)
T PLN03226 385 VPGGVRIGTPAMTSRGLVEKDFEKVAEFLHRAVTI 419 (475)
T ss_pred CCCCcccCcHHHHHCCCCHHHHHHHHHHHHHHHHH
Confidence 3567998 456788999999999999999874
No 257
>KOG0633|consensus
Probab=99.67 E-value=2e-15 Score=116.75 Aligned_cols=207 Identities=12% Similarity=0.084 Sum_probs=133.4
Q ss_pred hcCC-CCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEE---eec
Q psy6548 15 KLKS-NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVI---LGK 90 (242)
Q Consensus 15 ~~~~-~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~---~sK 90 (242)
+.+. +..++++++.++.|++|.+.- .+.+.++.+.-. |.++++||+|-+|...+ ..+.....-|++++ +||
T Consensus 153 evl~~ds~iK~~F~tSPgNPtg~~ik-~~di~KiLe~p~--nglVVvDEAYidFsg~~--S~~~lV~kYpNLivlqTlSK 227 (375)
T KOG0633|consen 153 EVLELDSKIKCIFLTSPGNPTGSIIK-EDDILKILEMPD--NGLVVVDEAYIDFSGVE--SRMKLVKKYPNLIVLQTLSK 227 (375)
T ss_pred HHHhccccceEEEEcCCCCCCccccc-HHHHHHHHhCCC--CcEEEEeeeeEeecccc--ccchHhHhCCceeehhhhhh
Confidence 3344 458999999999999997664 455666665533 78999999998873322 22222233466666 999
Q ss_pred ccc-CCccchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHH--Hh-ccHHHHHHHHHHHHHHHHHhhcCCCC
Q psy6548 91 ALS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVI--LE-ENMIENAYKMGEIFRSELRSRLSPDI 166 (242)
Q Consensus 91 ~~~-~g~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~--~~-~~~~~~~~~~~~~l~~~l~~~l~~~~ 166 (242)
+|| +| .|+|+...+..+++.+......++ .+..+..+|++|+..- .. +..++.+.+.+-++...| ++++...
T Consensus 228 sfGLAG-iRvG~~~~~~~ia~iln~~KaPYN--iS~~~s~~AL~Als~~n~kkme~~rdaiv~er~RL~keL-t~v~~~~ 303 (375)
T KOG0633|consen 228 SFGLAG-IRVGYGAFPLSIAEILNRAKAPYN--ISVAGSVAALAALSDSNGKKMEDVRDAIVRERERLFKEL-TEVPFLN 303 (375)
T ss_pred hcCcce-eEeecccccHHHHHHHHhccCCcc--ccchhHHHHHHhcCcccchHHHHHHHHHHHHHHHHHHHh-hcCcccc
Confidence 999 99 999999999998888877545443 4445555556555421 11 234444555555566666 5554211
Q ss_pred CCeEeeeceeEEEEecCCc--hhHHHHHHHHHHCCceeccC-----CCCEEEEeccCcCCHHHHHHHHHHHHHH
Q psy6548 167 VPVVRGKGLLNAIVLDKSI--LEVYDVCIKMKDAGLVTKPI-----SNNIIRLSPALNITEQELREGLDIIINT 233 (242)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~gi~~~~~-----~~~~lR~~~~~~~t~e~i~~~~~~l~~~ 233 (242)
.........|+.+++.+.. .......+.+.+.|++++.. -.+++|++ ..|+|+..-+++.|++.
T Consensus 304 ~~~gg~daNFiLi~v~~~~n~~akkly~q~at~~gVvVRfrgse~~c~G~lRit---vGt~EentvL~k~~K~~ 374 (375)
T KOG0633|consen 304 DYPGGSDANFILIEVTGGDNGMAKKLYKQDATKMGVVVRFRGSEEGCKGYLRIT---VGTPEENTVLMKCLKQF 374 (375)
T ss_pred CCCCcccccEEEEEEcCCCcHHHHHHHHHHHHhcceEEEEcCCccccceeEEEE---cCCcccchHHHHHHHhh
Confidence 1112234567777766431 22333455556789999754 36899999 55889999999988764
No 258
>PRK13238 tnaA tryptophanase/L-cysteine desulfhydrase, PLP-dependent; Provisional
Probab=99.66 E-value=3e-14 Score=123.40 Aligned_cols=212 Identities=14% Similarity=0.109 Sum_probs=137.8
Q ss_pred CCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccc----cCcc---C-cccccc----cCCCCCCEEE
Q psy6548 20 PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTG----LGRT---G-KLLAIH----YEDVRPDIVI 87 (242)
Q Consensus 20 ~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~----~~~~---g-~~~~~~----~~~~~~~~~~ 87 (242)
+++++|+++.++|++|+.+.+.+.+++|+++|++||+++|+|++|.. |... + ...... ..+-..|..+
T Consensus 176 ~~tk~Ivl~~p~NptGG~v~s~~~l~~I~~ia~~~gi~li~Daa~~~e~a~f~~~~e~g~~~~si~~i~~~~~s~~D~~~ 255 (460)
T PRK13238 176 ENVPFIVMTITNNSAGGQPVSMANLRAVYEIAKKYGIPVVIDAARFAENAYFIKQREPGYKDKSIKEIAREMFSYADGLT 255 (460)
T ss_pred CceeEEEEecCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEECcchhhhhhhhhhccccccCCCHHHHhhhhcccCcEEE
Confidence 47999999999999887788889999999999999999999998842 1110 1 010100 0011256666
Q ss_pred ee--ccccCCccchheeEeC-hhhhhccCCCC---CCC-CCCCCHHH-HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Q psy6548 88 LG--KALSGGLYPISAVLAD-DEVMGTLVPGT---HGS-TYGGNPLA-CKLAMTALDVILEENMIENAYKMGEIFRSELR 159 (242)
Q Consensus 88 ~s--K~~~~g~~~~g~~~~~-~~~~~~l~~~~---~~~-~~~~~~~~-~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l~ 159 (242)
+| |...++ . .|+++++ +++++.+++.. ++. ++++.+.. +.+...+++...++++.....+.++++.+.|
T Consensus 256 ~Sg~K~g~~~-~-GG~i~~~d~~l~~~~~~~~~~~~g~~t~~g~~~~~~~Ala~~l~e~~~~~~~~~~~~~~~~l~~~L- 332 (460)
T PRK13238 256 MSAKKDAMVN-I-GGLLCFRDEDLFTECRTLCILYEGFPTYGGLAGRDMEALAVGLYEGMDEDYLAYRIGQVEYLGEGL- 332 (460)
T ss_pred EecccCCCCc-c-eeEEEcChHHHHHHhhhcccccCCcccccCcHHHHHHHHHhhHHHhhChHHHHHHHHHHHHHHHHH-
Confidence 55 433333 2 3556666 57888877642 233 56665544 4443334554434555666666788899999
Q ss_pred hhcCCCCCCeEeeeceeEEEEecCC-------chhHHHHHHHHH-HCCceeccCC-----------------CCEEEEec
Q psy6548 160 SRLSPDIVPVVRGKGLLNAIVLDKS-------ILEVYDVCIKMK-DAGLVTKPIS-----------------NNIIRLSP 214 (242)
Q Consensus 160 ~~l~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~l~-~~gi~~~~~~-----------------~~~lR~~~ 214 (242)
++.+ +....+..|+++++++..- +....+++..|. +.||.+.|.+ ...+|++.
T Consensus 333 ~~~G--~~~~~p~Gg~~v~~d~~~~~~~~~~~~~~~~~~a~~L~~e~GV~~~~~~~f~~~~~~~~~~~~~~~~~~~Rla~ 410 (460)
T PRK13238 333 EEAG--VPIQTPAGGHAVFVDAGKFLPHIPAEQFPAQALACELYLEAGIRGVEIGSLLLGRDPKTGEQLPAPAELLRLAI 410 (460)
T ss_pred HHCC--CCeEccCCceEEEEEchhcCCCCCCCCCchHHHHHHHHHHcCeeeecccceecccCCCCccccCCccceEEEec
Confidence 6654 3333355678888877542 123467888877 5699887642 47899985
Q ss_pred cC-cCCHHHHHHHHHHHHHHHHH
Q psy6548 215 AL-NITEQELREGLDIIINTINT 236 (242)
Q Consensus 215 ~~-~~t~e~i~~~~~~l~~~l~~ 236 (242)
+- ..|.++++.+.++|+++.+.
T Consensus 411 ~rr~~~~~~~~~~~~~l~~~~~~ 433 (460)
T PRK13238 411 PRRVYTQSHMDYVAEALKAVKEN 433 (460)
T ss_pred ccccCCHHHHHHHHHHHHHHHHh
Confidence 42 44999999999999887754
No 259
>cd06450 DOPA_deC_like DOPA decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine.
Probab=99.66 E-value=2e-15 Score=126.62 Aligned_cols=183 Identities=16% Similarity=0.093 Sum_probs=121.3
Q ss_pred CEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCC-CCCEEE--eeccccCCcc
Q psy6548 21 NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDV-RPDIVI--LGKALSGGLY 97 (242)
Q Consensus 21 ~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~-~~~~~~--~sK~~~~g~~ 97 (242)
+++++++..+++++|.+.+ +++|+++|++||+++++|++|.++............+. ..|.++ ++|+++++ .
T Consensus 148 ~~~~v~~~~~~~~tG~~~~----~~~i~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~l~~p-~ 222 (345)
T cd06450 148 NPIMVVATAGTTDTGAIDP----LEEIADLAEKYDLWLHVDAAYGGFLLPFPEPRHLDFGIERVDSISVDPHKYGLVP-L 222 (345)
T ss_pred CcEEEEEecccCCCCCCCC----HHHHHHHHHHhCCeEEEechhhHHHhhChhhHHHhcCccccCEEEEchhHhhCCC-c
Confidence 6778888888888897654 99999999999999999999975321111000000111 346544 67998887 7
Q ss_pred chheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHh---ccHHHHHHHHHHHHHHHHHhhcCCCCCCeEeeec
Q psy6548 98 PISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILE---ENMIENAYKMGEIFRSELRSRLSPDIVPVVRGKG 174 (242)
Q Consensus 98 ~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~---~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~ 174 (242)
++|+++.+ ..+.+++++.+.. ++..++..++++++++.| +.++.... ..+..+
T Consensus 223 g~g~~~~~----------------------~~~~~~~l~~l~~~g~~~~~~~~~~~~~~l~~~L-~~~~~~~~-~~~~~~ 278 (345)
T cd06450 223 GCSAVLVR----------------------ALKLWATLRRFGRDGYGEHIDRIVDLAKYLAELI-RADPGFEL-LGEPNL 278 (345)
T ss_pred chHHHHHH----------------------HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH-hcCCCeEE-ecCCce
Confidence 88887544 2223344444433 345677778888888888 65542111 112234
Q ss_pred eeEEEEecCC---chhHHHHHHHHHHCCceeccC----CCCEEEEeccCcC-CHHHHHHHHHHHHH
Q psy6548 175 LLNAIVLDKS---ILEVYDVCIKMKDAGLVTKPI----SNNIIRLSPALNI-TEQELREGLDIIIN 232 (242)
Q Consensus 175 ~~~~~~~~~~---~~~~~~~~~~l~~~gi~~~~~----~~~~lR~~~~~~~-t~e~i~~~~~~l~~ 232 (242)
.++.+.++.. ..+..++.+.|.++|+++.+. .+..+|++++..+ |++|++++++.|++
T Consensus 279 ~iv~f~~~~~~~~~~~~~~i~~~L~~~g~~~~~~~~~~~~~~lRis~~~~~~t~~di~~l~~~l~~ 344 (345)
T cd06450 279 SLVCFRLKPSVKLDELNYDLSDRLNERGGWHVPATTLGGPNVLRFVVTNPLTTRDDADALLEDIER 344 (345)
T ss_pred eEEEEEECCcchhhHHHHHHHHHHHhcCCEEEEeeEECCeEEEEEEecCCCCCHHHHHHHHHHHHh
Confidence 5666766652 146778999999997655432 3578999998765 99999999999875
No 260
>PLN02368 alanine transaminase
Probab=99.65 E-value=5.5e-16 Score=132.37 Aligned_cols=159 Identities=9% Similarity=0.084 Sum_probs=109.3
Q ss_pred CEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCc-cc-cc-c---cCC----CCCCEEE---
Q psy6548 21 NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGK-LL-AI-H---YED----VRPDIVI--- 87 (242)
Q Consensus 21 ~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~-~~-~~-~---~~~----~~~~~~~--- 87 (242)
+++++++..++|++|. +.+++.+++|+++|++||++||+||+|.++...+. .+ +. . ..+ ....+++
T Consensus 210 ~~k~l~l~nP~NPTG~-v~s~e~l~~l~~~a~~~~~~II~DE~Y~~l~y~~~~~~~s~~~~~~~~~~~~~~~~~vI~~~S 288 (407)
T PLN02368 210 TVRAMVIINPGNPTGQ-CLSEANLREILKFCYQERLVLLGDEVYQQNIYQDERPFISAKKVLMDMGPPISKEVQLVSFHT 288 (407)
T ss_pred CeEEEEEECCCCCCCc-cCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCcccHHHHHhhhcccccccceEEEEec
Confidence 6888888888999995 55788999999999999999999999988644332 11 11 1 111 1123443
Q ss_pred eeccc-c-CCccchheeE---eChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHH-----------Hh-ccHHHHHHHH
Q psy6548 88 LGKAL-S-GGLYPISAVL---ADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVI-----------LE-ENMIENAYKM 150 (242)
Q Consensus 88 ~sK~~-~-~g~~~~g~~~---~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~-----------~~-~~~~~~~~~~ 150 (242)
|||+| + +| +|+||++ +++++++.+.... ..+++.+.+++.++.++++.. +. ..+.+.++++
T Consensus 289 fSK~~~~~~G-lRiGy~i~~~~~~~li~~~~~~~-~~~~~~~~~~Q~aa~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r 366 (407)
T PLN02368 289 VSKGYWGECG-QRGGYFEMTNIPPKTVEEIYKVA-SIALSPNVSGQIFMGLMVNPPKPGDISYDQFVRESKGILESLRRR 366 (407)
T ss_pred CCcccccCCc-cceEEEEEeCCCHHHHHHHHHHh-cccCCCCcHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHHHHHH
Confidence 89998 5 89 9999998 4788888877642 335667888888888777521 11 2346777888
Q ss_pred HHHHHHHHHhhcCCCCCCeEeeeceeEEEEecCC
Q psy6548 151 GEIFRSELRSRLSPDIVPVVRGKGLLNAIVLDKS 184 (242)
Q Consensus 151 ~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 184 (242)
++.+.+.| +.++. +....+..++++|.+++-+
T Consensus 367 r~~~~~~L-~~~~g-~~~~~P~Gafy~~~~i~lp 398 (407)
T PLN02368 367 ARMMTDGF-NSCKN-VVCNFTEGAMYSFPQIKLP 398 (407)
T ss_pred HHHHHHHH-hCCCC-eEeCCCCeeeEeccCCCCC
Confidence 88888888 66532 2222344577778655554
No 261
>PRK00451 glycine dehydrogenase subunit 1; Validated
Probab=99.65 E-value=3e-14 Score=123.67 Aligned_cols=211 Identities=15% Similarity=0.147 Sum_probs=131.7
Q ss_pred ccccCCC----Chhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEE--eccccccCccCccccc
Q psy6548 4 QFPVKSK----QVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIA--DEVQTGLGRTGKLLAI 76 (242)
Q Consensus 4 ~~~~~~~----d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~--De~~~~~~~~g~~~~~ 76 (242)
+..+|.+ |+++ +...++++++|+++.+ +++|.+.+ +++|.++|++||+++++ |.+..++ .. ..
T Consensus 182 ~~~v~~~~~~~d~~~l~~~i~~~t~~v~l~~p-n~tG~v~~----l~~I~~~a~~~~~~~iv~~d~~~~g~--~~---~~ 251 (447)
T PRK00451 182 VVEVPYEDGVTDLEALEAAVDDDTAAVVVQYP-NFFGVIED----LEEIAEIAHAGGALFIVGVDPVSLGL--LK---PP 251 (447)
T ss_pred EEEecCCCCCCCHHHHHHhcCCCeEEEEEECC-CCCCeeCC----HHHHHHHHHHCCCEEEEEcChHHhcc--CC---Cc
Confidence 3445554 5565 5555678999999887 77887755 99999999999999988 5443221 11 11
Q ss_pred ccCCCCCCEEEe-----ecccc-CCccchheeEeChhhhhccCCC--------------------------CCCCCC--C
Q psy6548 77 HYEDVRPDIVIL-----GKALS-GGLYPISAVLADDEVMGTLVPG--------------------------THGSTY--G 122 (242)
Q Consensus 77 ~~~~~~~~~~~~-----sK~~~-~g~~~~g~~~~~~~~~~~l~~~--------------------------~~~~~~--~ 122 (242)
. ....|++++ ||.+. +| +++|++..++++++.+.+. ...++. .
T Consensus 252 ~--~~~~D~~~~s~~k~~~~~~~~G-pg~G~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (447)
T PRK00451 252 G--EYGADIVVGEGQPLGIPLSFGG-PYLGFFATRKKLVRQMPGRLVGETVDADGKRGFVLTLQAREQHIRREKATSNIC 328 (447)
T ss_pred c--cCCCCEEEECCCcCCCCCCCCC-CCchHHHhhHHHHhhCCCCEeeeecccCCCeeeEeecccccccccccccccccc
Confidence 1 234577763 45555 67 7899999988888775321 001111 1
Q ss_pred CCHHHH-HHHHHHHHHHHh---ccHHHHHHHHHHHHHHHHHhhcCCCCCCeEeeecee--EEEEecCCchhHHHHHHHHH
Q psy6548 123 GNPLAC-KLAMTALDVILE---ENMIENAYKMGEIFRSELRSRLSPDIVPVVRGKGLL--NAIVLDKSILEVYDVCIKMK 196 (242)
Q Consensus 123 ~~~~~~-~~a~a~l~~~~~---~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~ 196 (242)
.+...+ .++..+++.+.+ ++..++++++++++++.| +.++..... ....+ +.+.++ .+..++.++|.
T Consensus 329 ~~~~~~~~aaa~~l~~~~~~g~~~~~~~~~~~~~~l~~~L-~~~~g~~~~---~~~~~~~~~v~~~---~~~~~~~~~L~ 401 (447)
T PRK00451 329 TNQALNALAAAIYMSLLGPEGLRELAEQNHQKAHYLAERL-AEIGGVELF---DGPFFNEFVVRLP---KPAEEVNEALL 401 (447)
T ss_pred ccHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH-hhcCCEEec---CCCeEEEEEEecC---CCHHHHHHHHH
Confidence 111111 222223443322 345678888888899988 665421111 11222 224432 24688999999
Q ss_pred HCCceecc-------CCCCEEEEeccCcCCHHHHHHHHHHHHHHH
Q psy6548 197 DAGLVTKP-------ISNNIIRLSPALNITEQELREGLDIIINTI 234 (242)
Q Consensus 197 ~~gi~~~~-------~~~~~lR~~~~~~~t~e~i~~~~~~l~~~l 234 (242)
++|++... ...+.+|++++..+|+++++++++.|++++
T Consensus 402 ~~gi~~~~~~~~~~~~~~~~~rvs~~~~~t~e~i~~l~~~L~~~~ 446 (447)
T PRK00451 402 EKGILGGYDLGRYYPELGNHLLVCVTEKRTKEDIDALVAALGEVL 446 (447)
T ss_pred hcCCCCCcccccccCCcCCEEEEecCCCCCHHHHHHHHHHHHHHh
Confidence 99887531 123689999998999999999999998764
No 262
>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]
Probab=99.65 E-value=8.6e-14 Score=115.76 Aligned_cols=223 Identities=20% Similarity=0.257 Sum_probs=158.4
Q ss_pred ccccCCCC---hhh--hcCC-CCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccc
Q psy6548 4 QFPVKSKQ---VPA--KLKS-NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIH 77 (242)
Q Consensus 4 ~~~~~~~d---~~~--~~~~-~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~ 77 (242)
++.++|+. +++ +.+. ++++.++.+...-.++|...| +++|+++|++||+++|+|.+-+ + .|..+.++
T Consensus 108 ~~~~~wg~~v~p~~v~~~L~~~~~~~~V~~vH~ETSTGvlnp----l~~I~~~~k~~g~l~iVDaVsS-~--Gg~~~~vd 180 (383)
T COG0075 108 VLEVEWGEAVDPEEVEEALDKDPDIKAVAVVHNETSTGVLNP----LKEIAKAAKEHGALLIVDAVSS-L--GGEPLKVD 180 (383)
T ss_pred EEeCCCCCCCCHHHHHHHHhcCCCccEEEEEeccCcccccCc----HHHHHHHHHHcCCEEEEEeccc-C--CCcccchh
Confidence 34555643 333 4454 567889999888888897665 9999999999999999999876 3 33445566
Q ss_pred cCCCCCCEEEe--eccccCCccchheeEeChhhhhccCCCC------------------CCCCCCCCHHHHHHHHHHHHH
Q psy6548 78 YEDVRPDIVIL--GKALSGGLYPISAVLADDEVMGTLVPGT------------------HGSTYGGNPLACKLAMTALDV 137 (242)
Q Consensus 78 ~~~~~~~~~~~--sK~~~~g~~~~g~~~~~~~~~~~l~~~~------------------~~~~~~~~~~~~~~a~a~l~~ 137 (242)
.|++ |+++. -|+++++ .++|.+..+++.++.+.... ..+.++.+.....+..++++.
T Consensus 181 ~wgi--Dv~itgSQK~l~~P-PGla~v~~S~~a~e~~~~~~~~~~ylDL~~~~~~~~~~~~~p~Tppv~~i~aL~~al~~ 257 (383)
T COG0075 181 EWGI--DVAITGSQKALGAP-PGLAFVAVSERALEAIEERKHPSFYLDLKKWLKYMEKKGSTPYTPPVNLIYALREALDL 257 (383)
T ss_pred hcCc--cEEEecCchhccCC-CccceeEECHHHHHHHhcCCCCceeecHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHH
Confidence 7766 66663 3999976 67899999998888876431 123334444566666778888
Q ss_pred HHhc---cHHHHHHHHHHHHHHHHHhhcCCCCCCeE-eeeceeEEEEecCCchhHHHHHHHHHHC-CceeccC----CCC
Q psy6548 138 ILEE---NMIENAYKMGEIFRSELRSRLSPDIVPVV-RGKGLLNAIVLDKSILEVYDVCIKMKDA-GLVTKPI----SNN 208 (242)
Q Consensus 138 ~~~~---~~~~~~~~~~~~l~~~l~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~-gi~~~~~----~~~ 208 (242)
+..+ +..++.++++++++..+ ++++-...... ........+..+.. .+...+...++++ |+.+.++ .+.
T Consensus 258 i~~EGle~r~~RH~~~~~a~r~~~-~alGl~~~~~~~~~s~tvta~~~P~g-~~~~~~~~~~~~~~g~~i~gg~~~l~gk 335 (383)
T COG0075 258 ILEEGLEARIARHRRLAEALRAGL-EALGLELFADPERRSPTVTAIKVPEG-VDDKKVRRALLKEYGVEIAGGQGPLKGK 335 (383)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHH-HHcCCccccCcccCCCceEEEECCCC-CCcHHHHHHHHHhCCEEecccccccCcc
Confidence 8775 45677788999999999 88875333222 22334555666665 4443444455555 8888776 457
Q ss_pred EEEEeccCcCCHHHHHHHHHHHHHHHHHHh
Q psy6548 209 IIRLSPALNITEQELREGLDIIINTINTMA 238 (242)
Q Consensus 209 ~lR~~~~~~~t~e~i~~~~~~l~~~l~~~~ 238 (242)
.+||..-...+..++...+++|+.++.++.
T Consensus 336 ifRIGhMG~~~~~dv~~~l~ale~~L~~~g 365 (383)
T COG0075 336 IFRIGHMGNVRPEDVLAALAALEAALRELG 365 (383)
T ss_pred EEEEecCccCCHHHHHHHHHHHHHHHHHcC
Confidence 899987668899999999999999998763
No 263
>PRK06767 methionine gamma-lyase; Provisional
Probab=99.64 E-value=5.7e-15 Score=125.64 Aligned_cols=211 Identities=15% Similarity=0.120 Sum_probs=137.1
Q ss_pred CCCChhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEE
Q psy6548 8 KSKQVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIV 86 (242)
Q Consensus 8 ~~~d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~ 86 (242)
+..|+++ +...++++++|++|.++|++|.+.+ +++|.++|+++|+++|+|++|+.. ..+.+. ....|++
T Consensus 132 ~~~d~~~l~~~i~~~tklV~lesp~NptG~v~d----l~~I~~la~~~g~~vivD~a~a~~-~~~~pl-----~~g~Div 201 (386)
T PRK06767 132 DMETEADIENKIRPNTKLIFVETPINPTMKLID----LKQVIRVAKRNGLLVIVDNTFCSP-YLQRPL-----ELGCDAV 201 (386)
T ss_pred CCCCHHHHHHhhCcCceEEEEeCCCCCCceecC----HHHHHHHHHHcCCEEEEECCCccc-ccCCch-----hcCCcEE
Confidence 3345666 4444568999999999999997776 899999999999999999998521 111111 1234666
Q ss_pred E--eeccccC-Cccc-hheeEeChhhhhccCCCCCC-CCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhh
Q psy6548 87 I--LGKALSG-GLYP-ISAVLADDEVMGTLVPGTHG-STYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELRSR 161 (242)
Q Consensus 87 ~--~sK~~~~-g~~~-~g~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l~~~ 161 (242)
+ ++|.++| | .+ .|+++++++.++.+...... .....+++.+..+...++.+ +...++.++++..+.+.| ++
T Consensus 202 ~~S~sK~l~g~g-~~~gG~v~~~~~~i~~~~~~~~~~~g~~~~~~~a~l~~~~L~tl--~~r~~~~~~~a~~la~~L-~~ 277 (386)
T PRK06767 202 VHSATKYIGGHG-DVVAGVTICKTRALAEKIRPMRKDIGGIMAPFDAWLLLRGLKTL--AVRMDRHCDNAEKIVSFL-KN 277 (386)
T ss_pred EecCcceecCCC-CceeEEEEeChHHHHHHHHHHHHHhCCCCCHHHHHHHHcCCCcH--HHHHHHHHHHHHHHHHHH-Hc
Confidence 6 6799985 5 55 48888888776654321111 11123455444444444433 234577788899999999 66
Q ss_pred cCCCC-CC---------eEeeeceeEEEEecCCchhHHHHHHHHHHCCceeccC--------------------------
Q psy6548 162 LSPDI-VP---------VVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPI-------------------------- 205 (242)
Q Consensus 162 l~~~~-~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~-------------------------- 205 (242)
.+... .. ...+.|.++.|++.....++..|.+.|...++.++-+
T Consensus 278 ~p~v~~v~~p~~~~~~~~~~~~gg~vsf~l~~~~~~~~~f~~~l~~~~~~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~g 357 (386)
T PRK06767 278 HDAVEGVWYPEGELASRQMKRGGGVISFSIKGGKEETQAFINDLHFITIAVSLGDTETLIQHPATMTHAAIPAELRQEMG 357 (386)
T ss_pred CCCccEEECCCcHHHHHhCCCCCceEEEEEcCCHHHHHHHHHhCCccEEecCCCCcCccccCCCccccccCCHHHHHhcC
Confidence 65311 11 1123467888888654356788999998776666422
Q ss_pred -CCCEEEEeccCcCCHHHHHHHHHHHHHHHHH
Q psy6548 206 -SNNIIRLSPALNITEQELREGLDIIINTINT 236 (242)
Q Consensus 206 -~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~ 236 (242)
..+.+|++ ...|+.+.+++-|+++++.
T Consensus 358 i~~~l~R~s----vGlE~~~dl~~dl~~al~~ 385 (386)
T PRK06767 358 IYDNLIRLS----VGLESWEDIVSDLEQALKK 385 (386)
T ss_pred CCCCeEEEE----eccCCHHHHHHHHHHHHhh
Confidence 24689999 4556778888888877764
No 264
>PRK06234 methionine gamma-lyase; Provisional
Probab=99.64 E-value=6.8e-15 Score=125.64 Aligned_cols=216 Identities=14% Similarity=0.124 Sum_probs=139.2
Q ss_pred ccccCCCChhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhh--CCEEEEeccccccCccCcccccccCC
Q psy6548 4 QFPVKSKQVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQY--NVLFIADEVQTGLGRTGKLLAIHYED 80 (242)
Q Consensus 4 ~~~~~~~d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~--~~~li~De~~~~~~~~g~~~~~~~~~ 80 (242)
+..++.+|+++ +...++++++|++|.++|++|.+.+ +++|.++|++| |+++|+||+|... ..+.+ .+
T Consensus 131 v~~vd~~d~e~l~~~i~~~tklI~iesP~NPtG~v~d----l~~I~~la~~~~~~i~livDea~~~~-~~~~~-----l~ 200 (400)
T PRK06234 131 VTFVDTSNLEEVRNALKANTKVVYLETPANPTLKVTD----IKAISNIAHENNKECLVFVDNTFCTP-YIQRP-----LQ 200 (400)
T ss_pred EEEECCCCHHHHHHHhccCCeEEEEECCCCCCCCcCC----HHHHHHHHHhcCCCCEEEEECCCCch-hcCCc-----hh
Confidence 34567778888 5555668999999999999997765 99999999997 9999999999632 11111 12
Q ss_pred CCCCEEE--eeccccC-Cccc-hheeEeChhhhhccCCCC-C-CCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Q psy6548 81 VRPDIVI--LGKALSG-GLYP-ISAVLADDEVMGTLVPGT-H-GSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIF 154 (242)
Q Consensus 81 ~~~~~~~--~sK~~~~-g~~~-~g~~~~~~~~~~~l~~~~-~-~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l 154 (242)
...|+++ ++|.+++ | .+ .||+++++++++.++... . ......++..+..++..++.+ +...++.+++..++
T Consensus 201 ~g~Divv~S~sK~l~g~g-~~~gG~v~~~~~~~~~l~~~~~~~~~g~~l~p~~a~l~~~~l~tl--~~r~~~~~~na~~~ 277 (400)
T PRK06234 201 LGADVVVHSATKYLNGHG-DVIAGFVVGKEEFINQVKLFGIKDMTGSVIGPFEAFLIIRGMKTL--QIRMEKHCKNAMKV 277 (400)
T ss_pred hCCcEEEeeccccccCCC-CceeEEEEecHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhccCcH--HHHHHHHHHHHHHH
Confidence 2456666 7799984 5 55 488999988888775321 1 122345566555555444433 23456667788888
Q ss_pred HHHHHhhcCC-------CCCCe---------EeeeceeEEEEecCCchhHHHHHHHHHHCCceeccC-------------
Q psy6548 155 RSELRSRLSP-------DIVPV---------VRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPI------------- 205 (242)
Q Consensus 155 ~~~l~~~l~~-------~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~------------- 205 (242)
.+.| +..+. +.... ..+.|.++.|++.........|.+.|.--++.++-+
T Consensus 278 a~~L-~~~~~V~~V~~p~l~~~~~~~~~~~~~~~~g~l~s~~l~~~~~~~~~f~~~l~~~~~~~s~G~~~sl~~~p~~~~ 356 (400)
T PRK06234 278 AKFL-ESHPAVEKVYYPGLESFEYYELAKKQMSLPGAMISFELKGGVEEGKVVMNNVKLATLAVSLGDAETLIQHPASMT 356 (400)
T ss_pred HHHH-HcCCCeeEEECCCCCCCCcHHHHHHhCCCCCceEEEEecCcHHHHHHHHHhCCcceEeccCCCCCceecCCccCC
Confidence 8888 54432 11111 123577888998754244567777776544333211
Q ss_pred --------------CCCEEEEeccCcCCHHHHHHHHHHHHHHHHHH
Q psy6548 206 --------------SNNIIRLSPALNITEQELREGLDIIINTINTM 237 (242)
Q Consensus 206 --------------~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~ 237 (242)
.++.+|+++ ..|+.+.+++.|+++++.+
T Consensus 357 ~~~~~~~~~~~~gi~~~l~R~sv----GlE~~~dl~~dl~~al~~~ 398 (400)
T PRK06234 357 HSPYTAEERKEAGISDGLVRLSV----GLEDVDDIIADLKQALDLI 398 (400)
T ss_pred CCCCCHHHHHhcCCCCCeEEEEe----CCCCHHHHHHHHHHHHHHH
Confidence 246899994 4456677777777777653
No 265
>PRK08249 cystathionine gamma-synthase; Provisional
Probab=99.64 E-value=1.3e-14 Score=123.74 Aligned_cols=216 Identities=13% Similarity=0.132 Sum_probs=138.4
Q ss_pred cccCCCChhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCC
Q psy6548 5 FPVKSKQVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRP 83 (242)
Q Consensus 5 ~~~~~~d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~ 83 (242)
..++..|++. +...++++++|++|.++|++|.+++ +++|+++|++||+++|+|++|..+.. ..+ .....
T Consensus 132 ~~vd~~d~e~l~~~i~~~tklV~ie~p~NPtg~v~d----l~~I~~la~~~gi~livD~t~a~~~~-~~~-----l~~~~ 201 (398)
T PRK08249 132 TLCETGDHEQIEAEIAKGCDLLYLETPTNPTLKIVD----IERLAAAAKKVGALVVVDNTFATPIN-QNP-----LALGA 201 (398)
T ss_pred EEcCCCCHHHHHHhcCCCCeEEEEECCCCCCCccCC----HHHHHHHHHHcCCEEEEECCcCcccc-CCc-----hhhCC
Confidence 3456667777 5545568999999999999997776 89999999999999999999963211 111 12345
Q ss_pred CEEE--eeccccC-Cccch-heeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Q psy6548 84 DIVI--LGKALSG-GLYPI-SAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELR 159 (242)
Q Consensus 84 ~~~~--~sK~~~~-g~~~~-g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l~ 159 (242)
|+++ ++|.++| | -++ |++++++++++.+...........++..+..+...++.+.. ..++.++++..+.+.|
T Consensus 202 Divv~S~sK~l~g~~-~~~gG~vv~~~~l~~~l~~~~~~~g~~~s~~~a~l~l~~l~tL~~--R~~~~~~na~~la~~L- 277 (398)
T PRK08249 202 DLVIHSATKFLSGHA-DALGGVVCGSKELMEQVYHYREINGATMDPMSAYLILRGMKTLKL--RVRQQQESAMALAKYL- 277 (398)
T ss_pred CEEeccCceecCCCC-CceEEEEECCHHHHHHHHHHHHhcCCCCCHHHHHHHHhCcchHHH--HHHHHHHHHHHHHHHH-
Confidence 6666 7799985 3 343 66778888877766433323345566666666666665532 3466678888888888
Q ss_pred hhcCC-------CCCCe---------EeeeceeEEEEecCCchhHHHHHHHHHH--CCcee--------ccC--------
Q psy6548 160 SRLSP-------DIVPV---------VRGKGLLNAIVLDKSILEVYDVCIKMKD--AGLVT--------KPI-------- 205 (242)
Q Consensus 160 ~~l~~-------~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~gi~~--------~~~-------- 205 (242)
+..+. +.... ..+.|.++.|++..+...+..|.+.|.- .+.-+ .|.
T Consensus 278 ~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~g~~~sf~~~~~~~~~~~f~~~l~l~~~~~s~G~~~sl~~~~~~~~~~~~~ 357 (398)
T PRK08249 278 QTHPKVEAVYYPGLETHPNHEIAKAQMRGFGGILSFVLKGGMDTVKRLLPKLRYAHRAANLGAVETIYGPARTTSHVENT 357 (398)
T ss_pred HcCCCeeEEECCCCCCCccHHHHHhhCCCCCceEEEEEcCCHHHHHHHHHhCCcceEccCCCCCCceeeCCcccccccCC
Confidence 55432 11111 1245778889886542345566666632 22211 110
Q ss_pred ---------CCCEEEEeccCcCCHHHHHHHHHHHHHHHHHHh
Q psy6548 206 ---------SNNIIRLSPALNITEQELREGLDIIINTINTMA 238 (242)
Q Consensus 206 ---------~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~~ 238 (242)
.++.+|++ ...|+.+.+++.|+++++.+.
T Consensus 358 ~~~~~~~gi~~~liR~s----vGlE~~~dl~~dl~~al~~~~ 395 (398)
T PRK08249 358 LEERAALGIPEGLVRIS----VGIEDTEDLIADLEQAFAHLE 395 (398)
T ss_pred HHHHHhcCCCCCeEEEE----eccCCHHHHHHHHHHHHHHhh
Confidence 24689999 445677777777777777643
No 266
>PRK08247 cystathionine gamma-synthase; Reviewed
Probab=99.63 E-value=4.5e-15 Score=125.48 Aligned_cols=213 Identities=15% Similarity=0.156 Sum_probs=132.9
Q ss_pred ccccCCCChhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEecccc-ccCccCcccccccCCC
Q psy6548 4 QFPVKSKQVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQT-GLGRTGKLLAIHYEDV 81 (242)
Q Consensus 4 ~~~~~~~d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~-~~~~~g~~~~~~~~~~ 81 (242)
+..++..|++. +...++++++|++|.++|+++... .+++|+++|++||+++|+||+|. ++ ...+ ...
T Consensus 118 v~~vd~~d~~~l~~~i~~~tklv~le~P~NP~~~~~----dl~~I~~la~~~g~~lIvD~t~~~~~--~~~p-----~~~ 186 (366)
T PRK08247 118 FVYVNTASLKAIEQAITPNTKAIFIETPTNPLMQET----DIAAIAKIAKKHGLLLIVDNTFYTPV--LQRP-----LEE 186 (366)
T ss_pred EEEECCCCHHHHHHhcccCceEEEEECCCCCCCcHH----HHHHHHHHHHHcCCEEEEECCCcccc--ccCc-----hhc
Confidence 34566677877 555556899999999999876443 49999999999999999999984 22 1111 112
Q ss_pred CCCEEE--eeccccC--CccchheeEeC-hhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Q psy6548 82 RPDIVI--LGKALSG--GLYPISAVLAD-DEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRS 156 (242)
Q Consensus 82 ~~~~~~--~sK~~~~--g~~~~g~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~ 156 (242)
..|+++ +||.++| + ...|+++++ +++++.+...........+++.+..+...++.+. ...+..+++++.+.+
T Consensus 187 g~di~i~S~sK~~~g~~d-~~~G~iv~~~~~l~~~~~~~~~~~g~~~s~~~a~l~~~~l~tl~--~r~~~~~~~a~~l~~ 263 (366)
T PRK08247 187 GADIVIHSATKYLGGHND-VLAGLVVAKGQELCERLAYYQNAAGAVLSPFDSWLLIRGMKTLA--LRMRQHEENAKAIAA 263 (366)
T ss_pred CCcEEEeecceeccCCCc-eeeeEEecChHHHHHHHHHHHHhcCCCCChHHHHHHHhccCcHH--HHHHHHHHHHHHHHH
Confidence 345655 7899984 4 467888876 5666665533222233455666555555555332 234566888899999
Q ss_pred HHHhhcCCCCCCeEeeeceeEEEEecCCchhHHHHHHHHH----------HCCceeccC-----------------CCCE
Q psy6548 157 ELRSRLSPDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMK----------DAGLVTKPI-----------------SNNI 209 (242)
Q Consensus 157 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~----------~~gi~~~~~-----------------~~~~ 209 (242)
.| +..+.......++.|.++.+.+... .....|.+.+. .+++++.|. ..+.
T Consensus 264 ~L-~~~p~v~~v~~P~~gg~~sf~~~~~-~~~~~~~~~l~~~~~~~slg~~~sl~~~p~~~~~~~~~~~~r~~~gi~~~~ 341 (366)
T PRK08247 264 FL-NEQPGVTDVLYPGRGGMLSFRLQDE-EWVNPFLKSLKLITFAESLGGVESFITYPATQTHADIPEEIRIANGVCNRL 341 (366)
T ss_pred HH-HhCCCeeEEecCCcCcEEEEEECCH-HHHHHHHHcCCcceEccCCCCCceEEECCcccccccCCHHHHHhcCCCCCe
Confidence 99 6654311122344566777777542 33344444332 123333332 2468
Q ss_pred EEEeccCcCCHHHHHHHHHHHHHHHHH
Q psy6548 210 IRLSPALNITEQELREGLDIIINTINT 236 (242)
Q Consensus 210 lR~~~~~~~t~e~i~~~~~~l~~~l~~ 236 (242)
+|++ ...|+.+.+++.|+++++.
T Consensus 342 ~R~s----vGlE~~~dl~~dl~~al~~ 364 (366)
T PRK08247 342 LRFS----VGIENVEDLIADLKQAFKQ 364 (366)
T ss_pred EEEE----eccCCHHHHHHHHHHHHhh
Confidence 9999 4556777888888877765
No 267
>PRK07504 O-succinylhomoserine sulfhydrylase; Reviewed
Probab=99.63 E-value=9.4e-15 Score=124.65 Aligned_cols=215 Identities=15% Similarity=0.154 Sum_probs=135.2
Q ss_pred ccCCCChhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCC
Q psy6548 6 PVKSKQVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPD 84 (242)
Q Consensus 6 ~~~~~d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~ 84 (242)
.++..|+++ +...++++++|++|+++|++|.+.+ +++|.++|+++|+++|+|++|+... ...+ .....|
T Consensus 134 ~vd~~d~e~l~~ai~~~tklV~lesp~NptG~v~d----l~~I~~la~~~gi~lvvD~a~a~~~-~~~~-----~~~gaD 203 (398)
T PRK07504 134 LVDGLDLDNWEKAVRPNTKVFFLESPTNPTLEVID----IAAVAKIANQAGAKLVVDNVFATPL-FQKP-----LELGAH 203 (398)
T ss_pred EECCCCHHHHHHhcCcCceEEEEECCCCCCcEecC----HHHHHHHHHHcCCEEEEECCccccc-cCCc-----hhhCCC
Confidence 344566777 5555678999999999999997776 9999999999999999999996321 1111 122457
Q ss_pred EEE--eecccc-CCccchh-eeEeChhhhhc-cCCCCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Q psy6548 85 IVI--LGKALS-GGLYPIS-AVLADDEVMGT-LVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELR 159 (242)
Q Consensus 85 ~~~--~sK~~~-~g~~~~g-~~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l~ 159 (242)
+++ ++|+++ .| .++| +++++++.+.. ++..........+++.++.++..++.+.. ..++.+++...+.+.|
T Consensus 204 ivv~S~sK~l~g~g-~~~GG~vv~~~~~i~~~~~~~~~~~g~~~s~~~A~~~l~~L~tl~~--R~~~~~~na~~la~~L- 279 (398)
T PRK07504 204 IVVYSATKHIDGQG-RCLGGVVLSDKAWIEEHLQDYFRHTGPSLSPFNAWTLLKGLETLPV--RVRQQTESAAAIADFL- 279 (398)
T ss_pred EEEeeccccccCCc-cceEEEEEeCcHHHHHHHHHHHHHhCCCCCHHHHHHHHhccchHHH--HHHHHHHHHHHHHHHH-
Confidence 666 679998 46 7775 56676665532 32111111224566666666666665533 4556668888888888
Q ss_pred hhcCC-------CCCCeE---------eeeceeEEEEecCCchhHHHHHHHHHHCCceec----------cC--------
Q psy6548 160 SRLSP-------DIVPVV---------RGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTK----------PI-------- 205 (242)
Q Consensus 160 ~~l~~-------~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~----------~~-------- 205 (242)
+..+. +....+ .+.|.++.|++......+..|.+.|.--.+.++ |.
T Consensus 280 ~~~p~v~~v~yp~l~~~~~~~~~~~~~~g~g~~~s~~~~~~~~~~~~~~~~l~~~~~~~slG~~~sl~~~p~~~~~~~~~ 359 (398)
T PRK07504 280 AGHPKVARVIYPGRADHPQADIIAKQMTGGSTLVAFELKGGKEAAFRFLNALKIVRISNNLGDAKSLITHPATTTHKNLS 359 (398)
T ss_pred HcCCCccEEECCCCCCCccHHHHHHhCCCCccEEEEEeCCCHHHHHHHHHhCCcceecccCCCCCeeeeCCCCCCcccCC
Confidence 55442 111111 234778999996432445566666642222221 10
Q ss_pred ---------CCCEEEEeccCcCCHHHHHHHHHHHHHHHHHHh
Q psy6548 206 ---------SNNIIRLSPALNITEQELREGLDIIINTINTMA 238 (242)
Q Consensus 206 ---------~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~~ 238 (242)
..+.+|++ ...|+.+.+++.|+++++.+.
T Consensus 360 ~~~~~~~gi~~~liR~s----vGlE~~~dl~~dl~~al~~~~ 397 (398)
T PRK07504 360 PEARAELGISEGFLRLS----AGLEDTDDLIEDLAAALKKVR 397 (398)
T ss_pred HHHHHhcCCCCCeEEEE----eccCCHHHHHHHHHHHHHhhh
Confidence 24689999 344567777888877777543
No 268
>PRK14012 cysteine desulfurase; Provisional
Probab=99.62 E-value=1.1e-13 Score=118.57 Aligned_cols=210 Identities=13% Similarity=0.175 Sum_probs=130.4
Q ss_pred Chhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEEee
Q psy6548 11 QVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILG 89 (242)
Q Consensus 11 d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~s 89 (242)
|+++ +...+.+++++++..++|++|.+.+ +++|.++|++||+++|+|++|+ ++... .. .....+|++++|
T Consensus 133 d~~~l~~~i~~~t~lv~~~~~~n~tG~~~~----~~~I~~la~~~g~~vivD~a~~-~g~~~--~~--~~~~~~D~~~~s 203 (404)
T PRK14012 133 DLEKLEAAMRDDTILVSIMHVNNEIGVIQD----IAAIGEICRERGIIFHVDAAQS-VGKVP--ID--LSKLKVDLMSFS 203 (404)
T ss_pred CHHHHHHhcCCCCEEEEEECcCCCccchhh----HHHHHHHHHHcCCEEEEEcchh-cCCcc--cC--cccCCCCEEEEe
Confidence 5555 4444667899999999999997776 8999999999999999999996 22221 11 113457888866
Q ss_pred --ccccCCccchheeEeChhhhhccCCCCCCCC------C-CCCHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHH
Q psy6548 90 --KALSGGLYPISAVLADDEVMGTLVPGTHGST------Y-GGNPLACKLAMTALDVILE--ENMIENAYKMGEIFRSEL 158 (242)
Q Consensus 90 --K~~~~g~~~~g~~~~~~~~~~~l~~~~~~~~------~-~~~~~~~~~a~a~l~~~~~--~~~~~~~~~~~~~l~~~l 158 (242)
|.++ + .++|+++.+++....+.+...++. . +.+.....+..++++..+. ++..++.+++.+++.+.|
T Consensus 204 ~~K~~g-p-~g~G~l~~~~~~~~~~~~~~~g~~~~~~~~~gt~~~~~~~~l~~al~~~~~~~~~~~~~~~~l~~~l~~~L 281 (404)
T PRK14012 204 AHKIYG-P-KGIGALYVRRKPRVRLEAQMHGGGHERGMRSGTLPTHQIVGMGEAARIAKEEMATENERIRALRDRLWNGI 281 (404)
T ss_pred hhhccC-C-CceEEEEEecCCCCCCCceecCCCccCCccCCCcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 9665 3 357888877665444443222211 1 1233333333345554432 335677777888888888
Q ss_pred HhhcCCC-CC-CeEee--eceeEEEEecCCchhHHHHHHHHHHCCceeccC-----------------------CCCEEE
Q psy6548 159 RSRLSPD-IV-PVVRG--KGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPI-----------------------SNNIIR 211 (242)
Q Consensus 159 ~~~l~~~-~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~-----------------------~~~~lR 211 (242)
+.++.. .. ..... ....+++...+ ...+...|. ++.+..+ ..+.+|
T Consensus 282 -~~~~~i~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~l~--~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iR 354 (404)
T PRK14012 282 -KDIEEVYLNGDLEQRVPGNLNVSFNYVE----GESLIMALK--DLAVSSGSACTSASLEPSYVLRALGLNDELAHSSIR 354 (404)
T ss_pred -hcCCCEEEeCCccccCCCEEEEEEeCcC----HHHHHHhCC--CeEEEchhhhCCCCCCCCHHHHHcCCChhhcCceEE
Confidence 555421 11 00111 11234444332 245566553 4333211 136899
Q ss_pred EeccCcCCHHHHHHHHHHHHHHHHHHh
Q psy6548 212 LSPALNITEQELREGLDIIINTINTMA 238 (242)
Q Consensus 212 ~~~~~~~t~e~i~~~~~~l~~~l~~~~ 238 (242)
++++...|++|++++++.|+++++.+.
T Consensus 355 ls~~~~~t~~dvd~~~~~l~~~~~~~~ 381 (404)
T PRK14012 355 FSLGRFTTEEEIDYAIELVRKSIGKLR 381 (404)
T ss_pred EEecCCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999887753
No 269
>TIGR01325 O_suc_HS_sulf O-succinylhomoserine sulfhydrylase. This model describes O-succinylhomoserine sulfhydrylase, one of several related pyridoxal phosphate-dependent enzymes of cysteine and methionine metabolism. This enzyme is part of an alternative pathway of homocysteine biosynthesis, a step in methionine biosynthesis.
Probab=99.62 E-value=7e-15 Score=124.84 Aligned_cols=211 Identities=14% Similarity=0.207 Sum_probs=133.3
Q ss_pred ccccCCCChhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCC
Q psy6548 4 QFPVKSKQVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVR 82 (242)
Q Consensus 4 ~~~~~~~d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~ 82 (242)
+..+|.+|++. +...++++++|++|+++|++|...+ +++|.++|+++|+++|+|++|.... ...+ ....
T Consensus 121 v~~v~~~d~~~l~~~i~~~tklV~le~p~np~g~~~d----l~~I~~la~~~gi~livD~a~~~~~-~~~p-----l~~g 190 (380)
T TIGR01325 121 VSFVDPTDLNAWEAAVKPNTKLVFVETPSNPLGELVD----IAALAELAHAIGALLVVDNVFATPV-LQQP-----LKLG 190 (380)
T ss_pred EEEECCCCHHHHHHhcCCCceEEEEECCCCCCCeeeC----HHHHHHHHHHcCCEEEEECCCcccc-cCCc-----hhhC
Confidence 34466777777 5544568999999999999997765 9999999999999999999996321 1111 1234
Q ss_pred CCEEE--eeccccC-Cccch-heeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Q psy6548 83 PDIVI--LGKALSG-GLYPI-SAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSEL 158 (242)
Q Consensus 83 ~~~~~--~sK~~~~-g~~~~-g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l 158 (242)
+|+++ ++|+++| | .++ |++++++++++.++..........++..+..++..++.+.. ..++..+++..+.+.|
T Consensus 191 ~Divv~S~sK~l~g~g-~~~gG~vv~~~~~~~~l~~~~~~~g~~~~p~~a~~~l~~l~tl~~--r~~~~~~~a~~la~~L 267 (380)
T TIGR01325 191 ADVVVYSATKHIDGQG-RVMGGVIAGSEELMAEVAVYLRHTGPAMSPFNAWVLLKGLETLSL--RMQKQFDSALAIAEWL 267 (380)
T ss_pred CCEEEeeccceecCCC-CeEEEEEEeCHHHHHHHHHHHHhhCCCCCHHHHHHHHhccCcHHH--HHHHHHHHHHHHHHHH
Confidence 67776 7799985 4 454 77778888777666432222223345554444444554433 3566777888888888
Q ss_pred HhhcCC-------CCCCe---------EeeeceeEEEEecCCchhHHHHHHHHHHCCcee----------ccC-------
Q psy6548 159 RSRLSP-------DIVPV---------VRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVT----------KPI------- 205 (242)
Q Consensus 159 ~~~l~~-------~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~----------~~~------- 205 (242)
+..+. ..... ..+.|.++.|++.+. ..+..|.+.|.--.+.+ .|.
T Consensus 268 -~~~p~v~~V~yp~l~s~~~~~~~~~~~~g~g~~~s~~l~~~-~~~~~f~~~l~~~~~~~s~G~~~sl~~~p~~~~~~~~ 345 (380)
T TIGR01325 268 -QAQPQVQAVYYPGLPDHPQHELARRQQSGGGTVIGFDVADR-AAAWKVLDAVELVSITNNLGDAKSTITHPATTTHGRM 345 (380)
T ss_pred -HcCCCccEEECCCCCCCccHHHHHhhCCCCceEEEEEECCH-HHHHHHHHcCCcceEcccCCCCCeeeeCCCccCcccC
Confidence 55442 11111 124577899998732 45667777764222111 110
Q ss_pred ----------CCCEEEEeccCcCCHHHHHHHHHHHHHH
Q psy6548 206 ----------SNNIIRLSPALNITEQELREGLDIIINT 233 (242)
Q Consensus 206 ----------~~~~lR~~~~~~~t~e~i~~~~~~l~~~ 233 (242)
.++.+|++ ...|+.+.+++.|+++
T Consensus 346 ~~~~~~~~gi~~~liR~s----vGlE~~~dl~~dl~~a 379 (380)
T TIGR01325 346 QPEERAAAGIGDGLVRLS----VGLEDVDDLIADLKRA 379 (380)
T ss_pred CHHHHHhcCCCCCeEEEE----eccCCHHHHHHHHHhh
Confidence 24689999 3445667777776654
No 270
>TIGR01437 selA_rel uncharacterized pyridoxal phosphate-dependent enzyme. This model describes a protein related to a number of pyridoxal phosphate-dependent enzymes, and in particular to selenocysteine synthase (SelA), which converts Ser to selenocysteine on its tRNA. While resembling SelA, this protein is found only in species that have a better candidate SelA or else lack the other genes (selB, selC, and selD) required for selenocysteine incorporation.
Probab=99.62 E-value=7.1e-14 Score=118.01 Aligned_cols=208 Identities=14% Similarity=0.105 Sum_probs=128.7
Q ss_pred Chhh-hcCCCCCEEEEE-EcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEEe
Q psy6548 11 QVPA-KLKSNPNICAFM-VEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVIL 88 (242)
Q Consensus 11 d~~~-~~~~~~~~~~i~-~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~ 88 (242)
|+++ +...+++|++++ ++++++++|.+.+ +++|+++|++||+++|+|++|.. ... ....+ ..|++++
T Consensus 137 d~~~le~ai~~~t~ai~~v~~~~~~~g~~~~----~~~i~~~a~~~gi~vivD~a~~~---~~~--~~~~~--g~D~~~~ 205 (363)
T TIGR01437 137 SAEQLEAAITEKTAAILYIKSHHCVQKSMLS----VEDAAQVAQEHNLPLIVDAAAEE---DLQ--KYYRL--GADLVIY 205 (363)
T ss_pred CHHHHHHhcChhceEEEEEecCCCCcCCcCC----HHHHHHHHHHcCCeEEEECCCCC---chH--HHHHc--CCCEEEE
Confidence 4555 555566777665 5666777886665 88999999999999999999961 111 00112 3577775
Q ss_pred e--ccccCCccchheeEeChhhhhccCCCCCCC--CCCCCHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHHhhc
Q psy6548 89 G--KALSGGLYPISAVLADDEVMGTLVPGTHGS--TYGGNPLACKLAMTALDVILE--ENMIENAYKMGEIFRSELRSRL 162 (242)
Q Consensus 89 s--K~~~~g~~~~g~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~a~a~l~~~~~--~~~~~~~~~~~~~l~~~l~~~l 162 (242)
| |+++| ++.|++++++++++.+++...+. .+......+++..++++.+.. .+..+...++++.+++.| +++
T Consensus 206 S~~K~l~g--p~~G~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~gl~aAl~~~~~~~~~~~~~~~~~~~~l~~~L-~~i 282 (363)
T TIGR01437 206 SGAKAIEG--PTSGLVLGKKKYIEWVKLQSKGIGRAMKVGKENILGLTAALEQYLSTGKESGAEMVAKLTPFIEAL-NTL 282 (363)
T ss_pred eCCcccCC--CceEEEEEcHHHHHHHHhccCCCcceeccCHHHHHHHHHHHHHHHccCcccHHHHHHHHHHHHHHH-hcC
Confidence 4 98876 45899888888877664322211 111112334444456665543 234445556677788888 666
Q ss_pred CCC-CCCeEee--ec---eeEEEEecCCchhHHHHHHHHHHCC--ceecc--CCCCEEEEeccCcCCHHHHHHHHHHHHH
Q psy6548 163 SPD-IVPVVRG--KG---LLNAIVLDKSILEVYDVCIKMKDAG--LVTKP--ISNNIIRLSPALNITEQELREGLDIIIN 232 (242)
Q Consensus 163 ~~~-~~~~~~~--~~---~~~~~~~~~~~~~~~~~~~~l~~~g--i~~~~--~~~~~lR~~~~~~~t~e~i~~~~~~l~~ 232 (242)
+.- ....... .. ..+.++....+.+..++.++|.++| |.+++ ...+.+|+.+.. .+++|++.++++|++
T Consensus 283 ~g~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~l~~~L~~~~~~I~~r~~~~~~~~~~l~~~~-~~~~e~~~~~~~l~~ 361 (363)
T TIGR01437 283 KGVSASIVQDEAGRDIARAEIRFDESELGMTAADVVQALRQGEPAIYTRGYKANEGIIEIDPRS-VTGGQLDIIVERIRE 361 (363)
T ss_pred CCeEEEEecCCCCCcCceEEEEEeccCCCCCHHHHHHHHhcCCCCEEEeeeeecCCeEEEEeec-CCHHHHHHHHHHHHH
Confidence 421 1100011 11 1222333212257899999998877 66664 357889999885 579999999999987
Q ss_pred H
Q psy6548 233 T 233 (242)
Q Consensus 233 ~ 233 (242)
.
T Consensus 362 ~ 362 (363)
T TIGR01437 362 I 362 (363)
T ss_pred h
Confidence 5
No 271
>TIGR01366 serC_3 phosphoserine aminotransferase, putative. This model represents a putative variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in Mycobacterium tuberculosis and related high-GC Gram-positive bacteria.
Probab=99.61 E-value=9e-14 Score=117.27 Aligned_cols=204 Identities=11% Similarity=0.157 Sum_probs=138.4
Q ss_pred CCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEEee--ccccC
Q psy6548 17 KSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILG--KALSG 94 (242)
Q Consensus 17 ~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~s--K~~~~ 94 (242)
..+.++++|++....+.+|...| +++| ++++|+++++|.+++ ++ +....++ ..|++++| |++++
T Consensus 124 ~~~~~~~lV~~~h~et~tG~~~p----i~~I---~~~~g~~~iVDavqs-~g--~~~idv~----~~D~~~~s~~K~lg~ 189 (361)
T TIGR01366 124 QADPGVDVIAWAHNETSTGVAVP----VRRP---EGSDDALVVIDATSG-AG--GLPVDIA----ETDVYYFAPQKNFAS 189 (361)
T ss_pred ccCCCCCEEEEcccCCccceecc----cccc---cccCCCeEEEEcCcc-cc--CCCCCHH----HCCEEEEEchhhcCC
Confidence 34568999999999999998887 5544 589999999999996 32 1222222 15888876 99984
Q ss_pred CccchheeEeChhhhhccCCCCC--------------------CCCCCCCHH-HHHHHHHHHHHHHhc-c---HHHHHHH
Q psy6548 95 GLYPISAVLADDEVMGTLVPGTH--------------------GSTYGGNPL-ACKLAMTALDVILEE-N---MIENAYK 149 (242)
Q Consensus 95 g~~~~g~~~~~~~~~~~l~~~~~--------------------~~~~~~~~~-~~~~a~a~l~~~~~~-~---~~~~~~~ 149 (242)
. -+++.++.++++++++.+... +.+...+++ ...+..++++.+++. + ..++.++
T Consensus 190 ~-~Gl~~~~~s~~~~~~~~~~~~~~~~~p~~~d~~~~~~~~~~~~t~~tp~i~~i~~l~~al~~l~~~gg~e~~~~r~~~ 268 (361)
T TIGR01366 190 D-GGLWLAIMSPAALERIEAIAASGRWVPEFLSLPTAVDNSLKNQTYNTPAIATLALLAEQIDWMNGNGGLDWAVARTAD 268 (361)
T ss_pred C-CceEEEEECHHHHhhhhcccCCCCCCchhhhHHHHHhccccCCCCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 3 335566778888777653211 122233333 344556778877653 2 4577778
Q ss_pred HHHHHHHHHHhhcCC-CCC-CeEe-eeceeEEEEecCCchhHHHHHHHHHHCCceeccC----CCCEEEEeccCcCCHHH
Q psy6548 150 MGEIFRSELRSRLSP-DIV-PVVR-GKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPI----SNNIIRLSPALNITEQE 222 (242)
Q Consensus 150 ~~~~l~~~l~~~l~~-~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~----~~~~lR~~~~~~~t~e~ 222 (242)
+.+++++.+ ++++. ... .... .......+.+++. .+..++.+.|.++||.+.++ +.+.+|+++..++|.+|
T Consensus 269 l~~~l~~~l-~~~~~~~~~~~~~~~~s~~v~~v~~~~g-~~~~~v~~~L~~~gI~i~~~~~~l~~~~vRis~~~~~t~~d 346 (361)
T TIGR01366 269 SSSRLYSWA-QERPYATPFVTDPGKRSQVVGTIDFVDD-IDAATVAKILRANGIVDTEPYRKLGRNQLRVAMFPAIDPDD 346 (361)
T ss_pred HHHHHHHHH-HhCCCcccCCCChhhcccceEEEECCCc-cCHHHHHHHHHHCCCeeccCccccCCCcEEEEcCCCCCHHH
Confidence 888888888 66652 111 1111 1112233444443 67889999999999999765 34579999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q psy6548 223 LREGLDIIINTINTM 237 (242)
Q Consensus 223 i~~~~~~l~~~l~~~ 237 (242)
++++++.|+++++++
T Consensus 347 i~~l~~al~~~~~~~ 361 (361)
T TIGR01366 347 VEALTECVDWVVERL 361 (361)
T ss_pred HHHHHHHHHHHHhhC
Confidence 999999999988763
No 272
>PRK07049 methionine gamma-lyase; Validated
Probab=99.61 E-value=1.1e-14 Score=125.21 Aligned_cols=202 Identities=14% Similarity=0.155 Sum_probs=128.3
Q ss_pred CCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHh---hCCEEEEeccccccCccCcccccccCCCCCCEEE--eecccc
Q psy6548 19 NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQ---YNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVI--LGKALS 93 (242)
Q Consensus 19 ~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~---~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~--~sK~~~ 93 (242)
.+++++|++|+++||+|.++ +.+.+.++++.|++ +++++|+||+|.+..... +. ....|+++ +||.++
T Consensus 172 ~~~tklv~lesP~NPtg~v~-d~~~l~~la~~~~~~~~~~~~vvvDety~~~~~~~-pl-----~~g~divv~S~SK~~g 244 (427)
T PRK07049 172 KGRVSLILIETPANPTNSLV-DVAAVRRVADAIEARQGHRPIIACDNTLLGPVFQK-PL-----EHGADLSVYSLTKYVG 244 (427)
T ss_pred CCCceEEEEECCCCCCCccc-CHHHHHHHHHHhhhcccCCCEEEEECCccccccCC-cc-----ccCCCEEEEcCceeec
Confidence 46899999999999999665 44445555555432 799999999985431111 11 12346665 889999
Q ss_pred --CCccchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhhcCCC------
Q psy6548 94 --GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELRSRLSPD------ 165 (242)
Q Consensus 94 --~g~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~------ 165 (242)
+| +++||+++++++++.+...........+++.+..+...++.+.. ..++..+++..+.+.| +..+..
T Consensus 245 G~~g-lr~G~vv~~~~l~~~l~~~~~~~g~~ls~~~a~l~~r~L~tl~~--R~~~~~~~a~~la~~L-~~~p~V~~v~yp 320 (427)
T PRK07049 245 GHSD-LVAGAVLGRKALIRQVRALRSAIGTQLDPHSCWMLGRSLETLVL--RMERANRNARAVAEFL-RDHPKVEKLHYL 320 (427)
T ss_pred CCCC-cEEEEEECCHHHHHHHHHHHHhcCCCCCHHHHHHHHcCCChHHH--HHHHHHHHHHHHHHHH-HhCCCccEEECC
Confidence 68 89999999988888776533333344667777666666654432 3455577888888888 655421
Q ss_pred -C--CC---------eEeeeceeEEEEecCCchhHHHHHHHHHHCCceec----------cC-----------------C
Q psy6548 166 -I--VP---------VVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTK----------PI-----------------S 206 (242)
Q Consensus 166 -~--~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~----------~~-----------------~ 206 (242)
. .. ...+.|.++.|++......+..|.+.|.--.+.++ |. .
T Consensus 321 ~~l~~~~~~~~~~~~~~~g~g~~~s~~~~~~~~~~~~f~~~l~l~~~~~slG~~~sli~~~~~~~h~~~~~~~~~~~gi~ 400 (427)
T PRK07049 321 PFLDPDSAYGAVYKRQCTGAGSTFSFDIKGGQAAAFRFLNALQIFKLAVSLGGTESLASHPASMTHSGVPADVRERIGVL 400 (427)
T ss_pred CCCCCCCccHHHHHhhCCCCccEEEEEEcCCHHHHHHHHHcCcccEEcccCCCCCceeeCCCccccccCCHHHHHhcCCC
Confidence 1 00 01244778888886542445666666642221111 10 2
Q ss_pred CCEEEEeccCcCCHHHHHHHHHHHHHHHH
Q psy6548 207 NNIIRLSPALNITEQELREGLDIIINTIN 235 (242)
Q Consensus 207 ~~~lR~~~~~~~t~e~i~~~~~~l~~~l~ 235 (242)
++.||++ ...|+.+.+++.|+++++
T Consensus 401 ~~liR~s----vGlE~~~dl~~dl~~al~ 425 (427)
T PRK07049 401 ESTIRLS----IGIEHPDDLIADLAQALD 425 (427)
T ss_pred cCeEEEE----eCcCCHHHHHHHHHHHHh
Confidence 4689999 445677778888877775
No 273
>PRK08133 O-succinylhomoserine sulfhydrylase; Validated
Probab=99.61 E-value=1.4e-14 Score=123.31 Aligned_cols=214 Identities=14% Similarity=0.177 Sum_probs=131.4
Q ss_pred ccccCCCChhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCC
Q psy6548 4 QFPVKSKQVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVR 82 (242)
Q Consensus 4 ~~~~~~~d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~ 82 (242)
+..++.+|+++ +...++++++|++|.++|++|.+.+ +++|+++|++||+++|+|+++... ....+. ...
T Consensus 128 v~~vd~~d~~~l~~~i~~~tklV~ie~p~NptG~v~d----l~~I~~la~~~gi~livD~t~~~~-~~~~pl-----~~g 197 (390)
T PRK08133 128 TTFVDLTDLDAWRAAVRPNTKLFFLETPSNPLTELAD----IAALAEIAHAAGALLVVDNCFCTP-ALQQPL-----KLG 197 (390)
T ss_pred EEEECCCCHHHHHHhcCcCCeEEEEECCCCCCCCcCC----HHHHHHHHHHcCCEEEEECCCccc-ccCCch-----hhC
Confidence 44567777887 5555678999999999999997765 899999999999999999998521 111111 123
Q ss_pred CCEEE--eeccccC-Cccch-heeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Q psy6548 83 PDIVI--LGKALSG-GLYPI-SAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSEL 158 (242)
Q Consensus 83 ~~~~~--~sK~~~~-g~~~~-g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l 158 (242)
.|+++ ++|.+++ | .++ |+++++++.++.+...........++..+..++..++.+.. ..++..+++..+.+.|
T Consensus 198 ~Divv~S~sK~~~g~g-~~~GG~vv~~~~~~~~~~~~~~~~g~~~~~~~a~~~l~gl~tl~~--R~~~~~~~a~~la~~L 274 (390)
T PRK08133 198 ADVVIHSATKYLDGQG-RVLGGAVVGSKELMEEVFGFLRTAGPTLSPFNAWVFLKGLETLSL--RMEAHSANALALAEWL 274 (390)
T ss_pred CcEEEeecceeecCCc-ceEeEEEEcCHHHHHHHHHHHHHhCCCCCHHHHHHHHcccchHHH--HHHHHHHHHHHHHHHH
Confidence 46666 7799984 5 666 56667777665554322222223445554444444443322 3455556777888888
Q ss_pred HhhcCC-------CCCC---------eEeeeceeEEEEecCCchhHHHHHHHHHHCCceec----------cC-------
Q psy6548 159 RSRLSP-------DIVP---------VVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTK----------PI------- 205 (242)
Q Consensus 159 ~~~l~~-------~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~----------~~------- 205 (242)
+..+. +... ...+.|.++.|++......+..|.+.|.--.+.++ |.
T Consensus 275 -~~~p~v~~v~yp~l~~~p~~~~~~~~~~g~g~~~s~~l~~~~~~~~~f~~~l~l~~~~~slG~~~sl~~~p~~~~~~~~ 353 (390)
T PRK08133 275 -EAHPGVERVFYPGLPSHPQHELAKRQQKGGGAIVSFEVKGGREAAWRVIDATRLISITANLGDTKTTITHPATTTHGRL 353 (390)
T ss_pred -HhCCCeeEEECCCCCCCccHHHHHHhCCCCceEEEEEEcCCHHHHHHHHHhCCcceEeccCCCcceeeecCCCCCcccC
Confidence 54432 1111 12345778999986432345566666642211111 10
Q ss_pred ----------CCCEEEEeccCcCCHHHHHHHHHHHHHHHH
Q psy6548 206 ----------SNNIIRLSPALNITEQELREGLDIIINTIN 235 (242)
Q Consensus 206 ----------~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~ 235 (242)
.++.+|++ ...|+.+.+++-|+++++
T Consensus 354 ~~~~~~~~gi~~~liR~s----vGlE~~~dl~~dl~~al~ 389 (390)
T PRK08133 354 SPEARAAAGITEGLIRVA----VGLEDVADIKADLARGLA 389 (390)
T ss_pred CHHHHHhcCCCCCeEEEE----eCcCCHHHHHHHHHHHhh
Confidence 24689999 444567778887777764
No 274
>PRK04366 glycine dehydrogenase subunit 2; Validated
Probab=99.60 E-value=2.7e-13 Score=118.41 Aligned_cols=217 Identities=16% Similarity=0.129 Sum_probs=134.5
Q ss_pred Chhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEEe-
Q psy6548 11 QVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVIL- 88 (242)
Q Consensus 11 d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~- 88 (242)
|+++ +...++++++|++..++ ++|.+ ...+++|+++|+++|+++++|+++. .+..|.. .... ...|++++
T Consensus 197 D~e~L~~~i~~~t~~V~v~~Pn-~tG~~---~~dl~eI~~~a~~~gal~iVD~a~~-~~~~g~~-~~~~--~GaD~~~~~ 268 (481)
T PRK04366 197 DLEALKAAVGEDTAALMLTNPN-TLGLF---ERNILEIAEIVHEAGGLLYYDGANL-NAILGKA-RPGD--MGFDVVHLN 268 (481)
T ss_pred CHHHHHhhcccCCeEEEEeCCC-Ccccc---chHHHHHHHHHHHcCCEEEEEecCh-hhhcccC-Cccc--cCCCEEEEe
Confidence 4555 44446678888887755 67743 1349999999999999999999984 1112211 1122 34688774
Q ss_pred -ecccc-----CCccchheeEeChhhhhccCCCCC-----CC--------------CCCCCHHHHHHHHHHHHHHHhccH
Q psy6548 89 -GKALS-----GGLYPISAVLADDEVMGTLVPGTH-----GS--------------TYGGNPLACKLAMTALDVILEENM 143 (242)
Q Consensus 89 -sK~~~-----~g~~~~g~~~~~~~~~~~l~~~~~-----~~--------------~~~~~~~~~~~a~a~l~~~~~~~~ 143 (242)
.|+|+ || ..+|++..++++.+.+..... .+ .++++.+.+.+++..+..+-.+++
T Consensus 269 ~hK~l~~P~g~Gg-p~~G~l~~~~~~~~~lp~~~v~~~g~~~~l~~~r~~~i~r~~a~t~~~l~~~~a~~~l~~~G~~Gl 347 (481)
T PRK04366 269 LHKTFSTPHGGGG-PGSGPVGVKEELAPFLPVPVVEKDGDRYRLDYDRPKSIGRVRAFYGNFGVLVRAYAYIRSLGAEGL 347 (481)
T ss_pred chhhcCCCCCCCC-CCeeeeeehhhhHhhCCCCeeeccCCceeecccccccCCCcccccCchHHHHHHHHHHHHHHHHHH
Confidence 49887 33 456788888777766632110 00 112223333344444444433433
Q ss_pred ---HHHHHHHHHHHHHHHHhhcCCCCCCeEeeeceeEEEEec---CCchhHHHHHHHHHHCCceeccC-----CCCEEEE
Q psy6548 144 ---IENAYKMGEIFRSELRSRLSPDIVPVVRGKGLLNAIVLD---KSILEVYDVCIKMKDAGLVTKPI-----SNNIIRL 212 (242)
Q Consensus 144 ---~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~gi~~~~~-----~~~~lR~ 212 (242)
.++...+.++++++| +++. ..... ...-..+.+..+ ..+.+..++.++|.++||.+... ..+.+|+
T Consensus 348 ~~~a~~~~~~a~~l~~~L-~~~~-~~~~~-~~~~~~~~~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~~~p~~~~~~l~i 424 (481)
T PRK04366 348 REVSEDAVLNANYLKARL-KDIY-DLPYD-RPCMHEFVLSGKKLKETGVRTLDIAKRLLDYGFHPPTIYFPLIVPEALMI 424 (481)
T ss_pred HHHHHHHHHHHHHHHHHh-HhhC-cccCC-CCeeEEEEEECccccccCCCHHHHHHHHHHCCccCCccccccccCCeEEE
Confidence 355566788999999 5542 11111 111111223221 11136788999999999987621 2568999
Q ss_pred eccCcCCHHHHHHHHHHHHHHHHHHhh
Q psy6548 213 SPALNITEQELREGLDIIINTINTMAA 239 (242)
Q Consensus 213 ~~~~~~t~e~i~~~~~~l~~~l~~~~~ 239 (242)
+++..+|++|||++++.|+++.+++.+
T Consensus 425 s~~e~~t~edid~l~~~l~~i~~~~~~ 451 (481)
T PRK04366 425 EPTETESKETLDAFIAAMKQIAEEAKE 451 (481)
T ss_pred cccCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999887654
No 275
>PRK07810 O-succinylhomoserine sulfhydrylase; Provisional
Probab=99.60 E-value=2.1e-14 Score=122.61 Aligned_cols=213 Identities=15% Similarity=0.183 Sum_probs=132.9
Q ss_pred ccccCCCChhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCC
Q psy6548 4 QFPVKSKQVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVR 82 (242)
Q Consensus 4 ~~~~~~~d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~ 82 (242)
+..++.+|+++ +...+.++++|++|.+.|++|.+++ +++|+++|++||+++|+|++|... ....+. ...
T Consensus 137 v~~vd~~d~~~l~~ai~~~tklV~~esp~Nptg~v~d----l~~I~~la~~~g~~vivD~a~a~~-~~~~~~-----~~g 206 (403)
T PRK07810 137 TVFVDGEDLSQWEEALSVPTQAVFFETPSNPMQSLVD----IAAVSELAHAAGAKVVLDNVFATP-LLQRGL-----PLG 206 (403)
T ss_pred EEEECCCCHHHHHHhcCcCceEEEEECCCCCCCeecC----HHHHHHHHHHcCCEEEEECCCCcc-ccCChh-----hcC
Confidence 45567788888 5555568999999999999997775 999999999999999999999521 111111 223
Q ss_pred CCEEE--eeccccC-Cccch-heeEeChhhhh-ccCCCCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Q psy6548 83 PDIVI--LGKALSG-GLYPI-SAVLADDEVMG-TLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSE 157 (242)
Q Consensus 83 ~~~~~--~sK~~~~-g~~~~-g~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~ 157 (242)
.|+++ ++|.++| | .++ |+++++++.+. .++..........++..+..++..++.+. ...++.+++..++.+.
T Consensus 207 aDivv~S~tK~l~g~g-~~~gG~v~~~~~~~~~~l~~~~~~~g~~~s~~~a~l~l~~L~tl~--~R~~~~~~~a~~~a~~ 283 (403)
T PRK07810 207 ADVVVYSGTKHIDGQG-RVLGGAILGDREYIDGPVQKLMRHTGPALSAFNAWVLLKGLETLA--LRVRHSNASALRIAEF 283 (403)
T ss_pred CcEEEccCCceecCCc-CceeEEEEeChHHHHHHHHHHHHHhCCCCCHHHHHHHHhccCcHH--HHHHHHHHHHHHHHHH
Confidence 57777 6699984 5 555 77777776543 23321111222456666666666666443 3456677778888888
Q ss_pred HHhhcCCC-------CCCe---------EeeeceeEEEEecCC----chhHHHHHHHHHHC----------CceeccC--
Q psy6548 158 LRSRLSPD-------IVPV---------VRGKGLLNAIVLDKS----ILEVYDVCIKMKDA----------GLVTKPI-- 205 (242)
Q Consensus 158 l~~~l~~~-------~~~~---------~~~~~~~~~~~~~~~----~~~~~~~~~~l~~~----------gi~~~~~-- 205 (242)
| +..+.. .... ..+.|.++.|++... ...+..|++.|.-- .++..|.
T Consensus 284 L-~~~p~v~~V~yP~l~~~p~~~~~~~~~~g~g~~~s~~l~~~~~~~~~~~~~f~~~l~l~~~~~slG~~~sl~~~p~~~ 362 (403)
T PRK07810 284 L-EGHPAVRWVRYPFLPSHPQYDLAKRQMSGGGTVVTFELDAPEDAAKKRAFEVLDKLRVIDISNNLGDAKSLITHPATT 362 (403)
T ss_pred H-hcCCCccEEECCCCCCCccHHHHHhhCCCCceEEEEEEcCCCCcCHHHHHHHHHhCCceEEeccCCCCcceeeCCCcc
Confidence 8 555421 1111 124577888988652 13345566544311 2222221
Q ss_pred ---------------CCCEEEEeccCcCCHHHHHHHHHHHHHHH
Q psy6548 206 ---------------SNNIIRLSPALNITEQELREGLDIIINTI 234 (242)
Q Consensus 206 ---------------~~~~lR~~~~~~~t~e~i~~~~~~l~~~l 234 (242)
..+.+|++ ...|+.+.+++.|++++
T Consensus 363 ~h~~~~~~~~~~~gi~~~lvR~s----vGlE~~~dli~dl~~Al 402 (403)
T PRK07810 363 THRAMGPEGRAAIGLGDGVVRLS----VGLEDTDDLIADLDRAL 402 (403)
T ss_pred ccccCCHHHHHhcCCCCCeEEEE----eccCCHHHHHHHHHHhh
Confidence 24689999 44567777777777664
No 276
>cd00616 AHBA_syn 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn). AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary metabolites. Some well studied proteins in this CD are AHBA_synthase, protein product of pleiotropic regulatory gene degT, Arnb aminotransferase and pilin glycosylation protein. The prototype of this family, the AHBA_synthase, is a dimeric PLP dependent enzyme. AHBA_syn is the terminal enzyme of 3-amino-5-hydroxybenzoic acid (AHBA) formation which is involved in the biosynthesis of ansamycin antibiotics, including rifamycin B. Some members of this CD are involved in 4-amino-6-deoxy-monosaccharide D-perosamine synthesis. Perosamine is an important element in the glycosylation of several cell products, such as antibiotics and lipopolysaccharides of gram-positive and gram-negative bacteria. The pilin glycosylation protein
Probab=99.60 E-value=8.6e-14 Score=117.05 Aligned_cols=205 Identities=19% Similarity=0.208 Sum_probs=129.1
Q ss_pred Chhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEEee
Q psy6548 11 QVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILG 89 (242)
Q Consensus 11 d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~s 89 (242)
|+++ +...++++++|++++ ++|...+ +++|.++|++||+++|+|++|+ +|..... ...+...|+.++|
T Consensus 95 d~~~l~~~i~~~~~~v~~~~---~~G~~~~----~~~i~~l~~~~~i~li~D~a~~-~g~~~~~---~~~~~~~d~~~~S 163 (352)
T cd00616 95 DPELIEAAITPRTKAIIPVH---LYGNPAD----MDAIMAIAKRHGLPVIEDAAQA-LGATYKG---RKVGTFGDAGAFS 163 (352)
T ss_pred CHHHHHHhcCcCCeEEEEEC---CCCCcCC----HHHHHHHHHHcCCeEEEECCCC-CCCeECC---EEcccCcceeEEc
Confidence 4555 333356788888765 4665544 8999999999999999999996 2211111 1123334666655
Q ss_pred ----ccccCCccchheeEeC-hhhhhccCCCC---------------CCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHH
Q psy6548 90 ----KALSGGLYPISAVLAD-DEVMGTLVPGT---------------HGSTYGGNPLACKLAMTALDVILEENMIENAYK 149 (242)
Q Consensus 90 ----K~~~~g~~~~g~~~~~-~~~~~~l~~~~---------------~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~ 149 (242)
|++++| ..|+++.+ +++.+.++... .+.++..+++..+.++..++.+ +.+.++.++
T Consensus 164 ~~~~K~~~~~--~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~~~l~~~--~~~~~~~~~ 239 (352)
T cd00616 164 FHPTKNLTTG--EGGAVVTNDEELAERARLLRNHGRDRDRFKYEHEILGYNYRLSEIQAAIGLAQLEKL--DEIIARRRE 239 (352)
T ss_pred CCCCCCCccc--CceEEEECCHHHHHHHHHHHHcCCCCCCCccccceeeeccCcCHHHHHHHHHHHHhh--HHHHHHHHH
Confidence 999754 35666665 56665544210 1112234455555554444433 345677888
Q ss_pred HHHHHHHHHHhhcCC-CCCCeEe---eeceeEEEEecCC-chhHHHHHHHHHHCCceeccC---------C---------
Q psy6548 150 MGEIFRSELRSRLSP-DIVPVVR---GKGLLNAIVLDKS-ILEVYDVCIKMKDAGLVTKPI---------S--------- 206 (242)
Q Consensus 150 ~~~~l~~~l~~~l~~-~~~~~~~---~~~~~~~~~~~~~-~~~~~~~~~~l~~~gi~~~~~---------~--------- 206 (242)
+.+++++.| +.++. .+..... ....++.+.++.. +.+..++.+.|.++||.++.. .
T Consensus 240 ~~~~~~~~L-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~L~~~gI~~~~~~~~~~~~~~~~~~~~~~~~ 318 (352)
T cd00616 240 IAERYKELL-ADLPGIRLPDVPPGVKHSYHLYVIRLDPEAGESRDELIEALKEAGIETRVHYPPLHHQPPYKKLLGYPPG 318 (352)
T ss_pred HHHHHHHHh-cCCCCccCCCCCCCCceeeEEEEEEECCcCCCCHHHHHHHHHHCCCCeeeecCccccCHhhhhccCCCcC
Confidence 999999999 66542 1221111 2345666666531 157889999999999976521 0
Q ss_pred ---------CCEEEEeccCcCCHHHHHHHHHHHH
Q psy6548 207 ---------NNIIRLSPALNITEQELREGLDIII 231 (242)
Q Consensus 207 ---------~~~lR~~~~~~~t~e~i~~~~~~l~ 231 (242)
.+.+|+.++..+|++|++++++.|+
T Consensus 319 ~~~~a~~~~~~~l~l~~~~~~t~~di~~i~~~l~ 352 (352)
T cd00616 319 DLPNAEDLAERVLSLPLHPSLTEEEIDRVIEALR 352 (352)
T ss_pred CChHHHHHHhCeEEccCCCCCCHHHHHHHHHHhC
Confidence 1579999999999999999998873
No 277
>TIGR01328 met_gam_lyase methionine gamma-lyase. This model describes a methionine gamma-lyase subset of a family of PLP-dependent trans-sulfuration enzymes. The member from the parasite Trichomonas vaginalis is described as catalyzing alpha gamma- and alpha-beta eliminations and gamma-replacement reactions on methionine, cysteine, and some derivatives. Likewise, the enzyme from Pseudomonas degrades cysteine as well as methionine.
Probab=99.59 E-value=3.6e-14 Score=120.83 Aligned_cols=214 Identities=13% Similarity=0.089 Sum_probs=135.0
Q ss_pred cccCCCChhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCC
Q psy6548 5 FPVKSKQVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRP 83 (242)
Q Consensus 5 ~~~~~~d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~ 83 (242)
..++.+|+++ +...++++++|++|.++|++|.+.+ +++|.++|++||+++|+|++|... ..+.+ .+...
T Consensus 127 ~~vd~~d~e~l~~~i~~~tklV~le~p~Np~G~v~d----l~~I~~la~~~gi~livD~a~a~~-~~~~~-----~~~g~ 196 (391)
T TIGR01328 127 DFINMAIPEEVKAHIKDNTKIVYFETPANPTMKLID----MERVCRDAHSQGVKVIVDNTFATP-MLTNP-----VALGV 196 (391)
T ss_pred EEECCCCHHHHHHhhccCCeEEEEECCCCCCCcccC----HHHHHHHHHHcCCEEEEECCCchh-ccCCc-----hhcCC
Confidence 3456677777 5555668999999999999997765 999999999999999999999521 11211 12345
Q ss_pred CEEE--eeccccC-Cccc-hheeEeChhhhhccCCCCC--CCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Q psy6548 84 DIVI--LGKALSG-GLYP-ISAVLADDEVMGTLVPGTH--GSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSE 157 (242)
Q Consensus 84 ~~~~--~sK~~~~-g~~~-~g~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~ 157 (242)
|+++ ++|.+++ | .+ .|++++++++++.++.... ......++..+..++..++.+ +...++.+++...+.+.
T Consensus 197 Divv~S~sK~lgg~g-~~~gG~v~~~~~li~~l~~~~~~~~~g~~l~~~~a~l~l~~L~tl--~~r~~~~~~na~~la~~ 273 (391)
T TIGR01328 197 DVVVHSATKYIGGHG-DVVAGLICGKAELLQQIRMVGIKDMTGSVISPFDAWLILRGLKTL--NIRMKRHSENAMKVAEY 273 (391)
T ss_pred CEEEccccccccCCC-CceEEEEEcCHHHHHHHHHHHHHhCCCCCCCcHHHHHHHhCcCcH--HHHHHHHHHHHHHHHHH
Confidence 6666 7799983 4 44 5777788888877763211 112234455554444444433 23456677888888888
Q ss_pred HHhhcCC-------CCCCe---------EeeeceeEEEEecCCchhHHHHHHHHHHCCceec----------cC------
Q psy6548 158 LRSRLSP-------DIVPV---------VRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTK----------PI------ 205 (242)
Q Consensus 158 l~~~l~~-------~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~----------~~------ 205 (242)
| +..+. +.... ..+.|.++.|++.........|.+.|.--.+..+ |.
T Consensus 274 L-~~~p~v~~v~yp~l~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~f~~~l~~~~~~~s~G~~~sl~~~~~~~~~~~ 352 (391)
T TIGR01328 274 L-KSHPAVEKVYYPGFEDHPGHDIAAKQMRMGGGMITFELKGGFAGAKKLLNNLKLIRLAVSLGDAETLIQHPASMTHAV 352 (391)
T ss_pred H-HhCCCccEEECCCCCCCccHHHHHHhCCCCCceEEEEeCCCHHHHHHHHHhCCcceEecCCCCCcccCcCCCcccccc
Confidence 8 65442 11111 1234678889986432345566666532111111 10
Q ss_pred -----------CCCEEEEeccCcCCHHHHHHHHHHHHHHHHH
Q psy6548 206 -----------SNNIIRLSPALNITEQELREGLDIIINTINT 236 (242)
Q Consensus 206 -----------~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~ 236 (242)
..+.+|++ ...|+.+.+++.|+++++.
T Consensus 353 ~~~~~~~~~gi~~~liR~s----vGlE~~~dl~~dl~~al~~ 390 (391)
T TIGR01328 353 VPKEEREAAGITDGMIRLS----VGLEDADDLIADLKQALDA 390 (391)
T ss_pred CCHHHHHhcCCCCCeEEEE----eCcCCHHHHHHHHHHHHhh
Confidence 24689999 4556788888888888765
No 278
>PRK08776 cystathionine gamma-synthase; Provisional
Probab=99.59 E-value=7e-14 Score=119.43 Aligned_cols=178 Identities=15% Similarity=0.139 Sum_probs=114.5
Q ss_pred cccCCCChhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCC
Q psy6548 5 FPVKSKQVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRP 83 (242)
Q Consensus 5 ~~~~~~d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~ 83 (242)
..++..|++. +...++++++|+++.++|++|.+.+ +++|.++|++||+++|+|++|..-. ...+. ....
T Consensus 128 ~~v~~~d~~~l~~~i~~~tklV~l~~P~NPtG~v~d----l~~I~~la~~~gi~vIvD~a~a~~~-~~~pl-----~~ga 197 (405)
T PRK08776 128 ITADLTDPRSLADALAQSPKLVLIETPSNPLLRITD----LRFVIEAAHKVGALTVVDNTFLSPA-LQKPL-----EFGA 197 (405)
T ss_pred EEECCCCHHHHHHhcCcCCeEEEEECCCCCCCccCC----HHHHHHHHHHcCCEEEEECCCcccc-cCCcc-----cccC
Confidence 4455667777 4444568999999999999997654 9999999999999999999996311 11111 2345
Q ss_pred CEEE--eeccccC--CccchheeEe-ChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Q psy6548 84 DIVI--LGKALSG--GLYPISAVLA-DDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSEL 158 (242)
Q Consensus 84 ~~~~--~sK~~~~--g~~~~g~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l 158 (242)
|+++ .+|.++| + ...|+++. ++++.+++........+..+++.+......++.+. ...++.+++...+.+.|
T Consensus 198 Divv~S~tK~l~g~~~-~~~G~vv~~~~~l~~~l~~~~~~~g~~~s~~~a~l~~~gl~tl~--~r~~~~~~na~~la~~L 274 (405)
T PRK08776 198 DLVLHSTTKYINGHSD-VVGGAVVARDAELHQQLVWWANALGLTGSPFDAFLTLRGLRTLD--ARLRVHQENADAIAALL 274 (405)
T ss_pred CEEEecCceeecCCCC-ceEEEEEeCCHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhCcHH--HHHHHHHHHHHHHHHHH
Confidence 7766 5699984 4 44677765 46666665432222223457777666665555443 35677888888888888
Q ss_pred HhhcCC-------CCCC---------eEeeeceeEEEEecCCchhHHHHHHHHH
Q psy6548 159 RSRLSP-------DIVP---------VVRGKGLLNAIVLDKSILEVYDVCIKMK 196 (242)
Q Consensus 159 ~~~l~~-------~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 196 (242)
+..+. +... ...+.|.++.|++.........|.+.|.
T Consensus 275 -~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~g~~~s~~~~~~~~~~~~f~~~l~ 327 (405)
T PRK08776 275 -DGHAAVNQVYYPGLASHPGHALAARQQKGFGAMLSFELEGGEAAVRAFVDGLR 327 (405)
T ss_pred -HcCCCeeEEECCCCCCCcCHHHHHhcCCCCceEEEEEEcCCHHHHHHHHHhCC
Confidence 55542 1111 1134577899998654233456666664
No 279
>PRK07503 methionine gamma-lyase; Provisional
Probab=99.57 E-value=1.1e-13 Score=118.22 Aligned_cols=216 Identities=14% Similarity=0.115 Sum_probs=132.6
Q ss_pred cccCCCChhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCC
Q psy6548 5 FPVKSKQVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRP 83 (242)
Q Consensus 5 ~~~~~~d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~ 83 (242)
..++.+|++. +...++++++|++|.++|++|.+.+ +++|.++|++||+++|+|++|+.. ..+.+ .+...
T Consensus 133 ~~vd~~d~~~l~~~i~~~tklV~le~p~NPtG~~~d----i~~I~~la~~~gi~lIvD~a~a~~-~~~~~-----l~~g~ 202 (403)
T PRK07503 133 RHVDLTDPAALKAAISDKTRMVYFETPANPNMRLVD----IAAVAEIAHGAGAKVVVDNTYCTP-YLQRP-----LELGA 202 (403)
T ss_pred EEeCCCCHHHHHHhcCccCcEEEEeCCCCCCCeeeC----HHHHHHHHHHcCCEEEEECCCccc-ccCCc-----hhhCC
Confidence 3456667777 4444558999999999999997665 899999999999999999999632 11211 12345
Q ss_pred CEEE--eeccccC-CccchheeEeChhhhhccCCC--CCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Q psy6548 84 DIVI--LGKALSG-GLYPISAVLADDEVMGTLVPG--THGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSEL 158 (242)
Q Consensus 84 ~~~~--~sK~~~~-g~~~~g~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l 158 (242)
|+++ ++|.+++ |-.++|+++.+++++++++.. ........+++.+..++..++.+. ...++..++...+.+.|
T Consensus 203 Di~v~S~tK~l~g~gd~~gG~v~~~~~l~~~l~~~~~~~~~g~~~s~~~a~l~l~~L~tl~--~r~~~~~~na~~~a~~L 280 (403)
T PRK07503 203 DLVVHSATKYLGGHGDITAGLVVGGKALADRIRLEGLKDMTGAVMSPFDAFLLMRGLKTLA--LRMDRHCASAQAVAEWL 280 (403)
T ss_pred CEEEccccccccCCCceeEEEEEcCHHHHHHHHhhhHHhCcCCCCCHHHHHHHHcCcchHH--HHHHHHHHHHHHHHHHH
Confidence 6666 7799994 215678888888888877632 122234556666655555555442 23455567778888888
Q ss_pred HhhcCC-------CCCCe---------EeeeceeEEEEecCCchhHHHHHHHHHH--CCceec--------cC-------
Q psy6548 159 RSRLSP-------DIVPV---------VRGKGLLNAIVLDKSILEVYDVCIKMKD--AGLVTK--------PI------- 205 (242)
Q Consensus 159 ~~~l~~-------~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~gi~~~--------~~------- 205 (242)
+..+. +.... ..+.|.++.+.+..+......|.+.|.- .+.-+. |.
T Consensus 281 -~~~p~v~~V~~P~l~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~l~l~~~~~slG~~~sl~~~~~~~~h~~~ 359 (403)
T PRK07503 281 -ARHPAVELVHYPGLPSFAQHALAQRQMALPGGMIAFELKGGIAAGRRFMNALQLFARAVSLGDAESLAQHPASMTHSTY 359 (403)
T ss_pred -HhCCCccEEECCCCCCCccHHHHHHhCCCCCceEEEEECCCHHHHHHHHHhCCcceeecccCCCCccCcCCCCCccccC
Confidence 55432 11110 1124667888886542234455544431 221110 10
Q ss_pred ----------CCCEEEEeccCcCCHHHHHHHHHHHHHHHHHH
Q psy6548 206 ----------SNNIIRLSPALNITEQELREGLDIIINTINTM 237 (242)
Q Consensus 206 ----------~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~ 237 (242)
..+.+|+++ ..|+.+.+++.|+++++..
T Consensus 360 ~~~~~~~~gi~~~liR~sv----GlE~~~dl~~dl~~Al~~~ 397 (403)
T PRK07503 360 TPEERAEHGISEGLVRLSV----GLEDVADILADLAQALDAC 397 (403)
T ss_pred CHHHHHhcCCCCCeEEEEE----ecCCHHHHHHHHHHHHHHH
Confidence 246899994 4456667777777766653
No 280
>TIGR01364 serC_1 phosphoserine aminotransferase. This model represents the common form of the phosphoserine aminotransferase SerC. The phosphoserine aminotransferase of the archaeon Methanosarcina barkeri and putative phosphoserine aminotransferase of Mycobacterium tuberculosis are represented by separate models. All are members of the class V aminotransferases (pfam00266).
Probab=99.57 E-value=5.2e-13 Score=112.04 Aligned_cols=210 Identities=11% Similarity=0.085 Sum_probs=144.6
Q ss_pred cCCCChhh-h-cCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCC
Q psy6548 7 VKSKQVPA-K-LKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPD 84 (242)
Q Consensus 7 ~~~~d~~~-~-~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~ 84 (242)
+||.++.+ + ...++++++|.+...-+++|...+ ++++.+++++++|.+++ + .+.+..++.+ |
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~v~~th~ETstGv~~~---------~l~~~~~~l~iVDavss-~--g~~~id~~~~----d 177 (349)
T TIGR01364 114 GNYTKIPDPSTWEISEDAAYVHYCANETIHGVEFR---------ELPDVKNAPLVADMSSN-I--LSRPIDVSKF----G 177 (349)
T ss_pred CCCCCCCCHHhcCCCCCCCEEEEcCCCCcccEecc---------eecccCCCeEEEEcccc-c--cCccCCHHHc----c
Confidence 45766665 3 334568899999999888996544 67778999999999986 2 2223333333 3
Q ss_pred EEEee--ccccCCccchheeEeChhhhhccCCCC-----------CCCCC-CCCHHHHHHHHHHHHHHHhc-c---HHHH
Q psy6548 85 IVILG--KALSGGLYPISAVLADDEVMGTLVPGT-----------HGSTY-GGNPLACKLAMTALDVILEE-N---MIEN 146 (242)
Q Consensus 85 ~~~~s--K~~~~g~~~~g~~~~~~~~~~~l~~~~-----------~~~~~-~~~~~~~~~a~a~l~~~~~~-~---~~~~ 146 (242)
++++| |++| + .++|++..++++++++.+.. ...++ +.|.....+..++++.+.++ + +.++
T Consensus 178 ~~~~ssqK~lg-P-~Glg~l~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~Tp~~~~i~al~~al~~l~~~gG~e~i~~r 255 (349)
T TIGR01364 178 LIYAGAQKNIG-P-AGLTVVIVRKDLLGRASRITPSMLNYKIHAENDSMYNTPPTFAIYVSGLVFKWLKEQGGVKAIEKR 255 (349)
T ss_pred EEEEecccccC-C-CceEEEEECHHHHhhcccCCCCcchHHHHHhcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 66655 9997 4 56899999999988775531 01222 34455666666788887664 3 5677
Q ss_pred HHHHHHHHHHHHHhhcCCC-CC-CeEeeec-eeEEEEecCCchhHHHHHHHHHHCCceeccCC--CCEEEEeccCcCCHH
Q psy6548 147 AYKMGEIFRSELRSRLSPD-IV-PVVRGKG-LLNAIVLDKSILEVYDVCIKMKDAGLVTKPIS--NNIIRLSPALNITEQ 221 (242)
Q Consensus 147 ~~~~~~~l~~~l~~~l~~~-~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~--~~~lR~~~~~~~t~e 221 (242)
.+++.+++++.| +.++.- .. ......+ ..+.|.++.. ....++.+.+.++|+++.++. .+.+|+++..++|.|
T Consensus 256 ~~~l~~~l~~~l-~~~~gl~~~~~~~~~rs~~v~sf~~~~~-~~~~~~~~~~~~~Gi~~~~~~~~~g~vRvS~~~~nt~e 333 (349)
T TIGR01364 256 NQAKAQLLYDTI-DNSNGFYRNPVDPRNRSRMNVVFTLGNE-ELEKRFLKEAEERGLVSLKGHRSVGGMRASIYNAMPLE 333 (349)
T ss_pred HHHHHHHHHHHH-HhCCCeeccCCCHHHcCCeEEEEecCCh-hHhHHHHHHHHHCCCcccCCccccCeeEEECcCCCCHH
Confidence 778899999999 777521 11 1111123 4567776654 234677788899999666653 478999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q psy6548 222 ELREGLDIIINTINT 236 (242)
Q Consensus 222 ~i~~~~~~l~~~l~~ 236 (242)
||+++++.|++++++
T Consensus 334 did~l~~al~~~~~~ 348 (349)
T TIGR01364 334 GVQALVDFMKEFQKK 348 (349)
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999986653
No 281
>PRK08045 cystathionine gamma-synthase; Provisional
Probab=99.56 E-value=1.8e-13 Score=116.29 Aligned_cols=212 Identities=16% Similarity=0.131 Sum_probs=133.4
Q ss_pred CCCChhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEE
Q psy6548 8 KSKQVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIV 86 (242)
Q Consensus 8 ~~~d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~ 86 (242)
+..|+++ +...++++++|+++.++|++|.+.+ +++|.++|+++|+++|+||+|.... ...+ .....|++
T Consensus 123 d~~d~e~l~~~l~~~tklV~l~sP~NPtG~v~d----i~~I~~ia~~~g~~vivDeay~~~~-~~~p-----l~~gaDiv 192 (386)
T PRK08045 123 DQGDEQALRAALAEKPKLVLVESPSNPLLRVVD----IAKICHLAREAGAVSVVDNTFLSPA-LQNP-----LALGADLV 192 (386)
T ss_pred CCCCHHHHHHhcccCCeEEEEECCCCCCCEecC----HHHHHHHHHHcCCEEEEECCCCccc-cCCc-----hhhCCCEE
Confidence 4446666 4444558899999999999997775 8899999999999999999995321 1111 12344766
Q ss_pred E--eeccccC--CccchheeEe-ChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhh
Q psy6548 87 I--LGKALSG--GLYPISAVLA-DDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELRSR 161 (242)
Q Consensus 87 ~--~sK~~~~--g~~~~g~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l~~~ 161 (242)
+ ++|.++| + ...|+++. ++++++.+...........+++.+..+...++.+.. ..++..+++..+.+.| +.
T Consensus 193 v~S~tK~l~G~~d-~~~G~vi~~~~~~~~~l~~~~~~~g~~~~p~~~~l~~rgl~tl~~--R~~~~~~na~~la~~L-~~ 268 (386)
T PRK08045 193 LHSCTKYLNGHSD-VVAGVVIAKDPDVVTELAWWANNIGVTGGAFDSYLLLRGLRTLVP--RMELAQRNAQAIVKYL-QT 268 (386)
T ss_pred EeecceeccCCCC-ceeEEEEeCcHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhccHHH--HHHHHHHHHHHHHHHH-Hc
Confidence 6 7799984 4 45777766 466666554322223334667766666656654432 3466777788888888 54
Q ss_pred cCC-------CCCC---------eEeeeceeEEEEecCCchhHHHHHHHHHHCCceec----------cC----------
Q psy6548 162 LSP-------DIVP---------VVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTK----------PI---------- 205 (242)
Q Consensus 162 l~~-------~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~----------~~---------- 205 (242)
.+. +... ...+.|.++.|++..+......|.+.|.--.+.++ |.
T Consensus 269 ~p~v~~V~yp~l~~~p~~~~~~~~~~g~g~~~s~~~~~~~~~~~~f~~~l~~~~~~~s~G~~~sl~~~~~~~~~~~~~~~ 348 (386)
T PRK08045 269 QPLVKKLYHPSLPENQGHEIAARQQKGFGAMLSFELDGDEQTLRRFLGGLSLFTLAESLGGVESLISHAATMTHAGMAPE 348 (386)
T ss_pred CCCEeEEECCCCCCCcCHHHHHHhCCCCCceEEEEecCcHHHHHHHHHhccceeEeccCCCCceeEeCCCCcccccCCHH
Confidence 442 1111 11245778889986542334667776653222221 10
Q ss_pred -------CCCEEEEeccCcCCHHHHHHHHHHHHHHHHHH
Q psy6548 206 -------SNNIIRLSPALNITEQELREGLDIIINTINTM 237 (242)
Q Consensus 206 -------~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~ 237 (242)
.++.+|++ ...|+.+.+++-|+++++..
T Consensus 349 ~~~~~gi~~~liR~s----vGlE~~~dl~~dl~~al~~~ 383 (386)
T PRK08045 349 ARAAAGISETLLRIS----TGIEDGEDLIADLENGFRAA 383 (386)
T ss_pred HHHhcCCCCCeEEEE----eCcCCHHHHHHHHHHHHHHh
Confidence 24689999 34456777777777777654
No 282
>KOG0256|consensus
Probab=99.56 E-value=6.6e-13 Score=108.79 Aligned_cols=208 Identities=14% Similarity=0.193 Sum_probs=135.2
Q ss_pred CCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccc--cCccCccccc---cc-CCCCCC----EEEe
Q psy6548 19 NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTG--LGRTGKLLAI---HY-EDVRPD----IVIL 88 (242)
Q Consensus 19 ~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~--~~~~g~~~~~---~~-~~~~~~----~~~~ 88 (242)
+.+++++++.+++||-|++. +++.|..+..++.++|+.+|+||+|++ |+..+ ..++ .. ....+| +..+
T Consensus 224 ~~kVkGvlitNPsNPLG~~~-~~e~L~~ll~Fa~~kniHvI~DEIya~sVF~~~~-F~Sv~ev~~~~~~~~~rvHivysl 301 (471)
T KOG0256|consen 224 GLKVKGVLITNPSNPLGTTL-SPEELISLLNFASRKNIHVISDEIYAGSVFDKSE-FRSVLEVRKDPHLDPDRVHIVYSL 301 (471)
T ss_pred CCceeEEEEeCCCCCCCCcc-CHHHHHHHHHHHhhcceEEEeehhhcccccCccC-ceEHHHHhhccccCCCcEEEEEEe
Confidence 56899999999999999654 667899999999999999999999987 43332 1111 11 111344 3448
Q ss_pred ecccc-CCccchheeEeC-hhhhhccCCCCCCCCCCCCHHHHHHHHHHHHH--HHh---ccHHHHHHHHHHHHHHHHHhh
Q psy6548 89 GKALS-GGLYPISAVLAD-DEVMGTLVPGTHGSTYGGNPLACKLAMTALDV--ILE---ENMIENAYKMGEIFRSELRSR 161 (242)
Q Consensus 89 sK~~~-~g~~~~g~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~--~~~---~~~~~~~~~~~~~l~~~l~~~ 161 (242)
||=|| +| +|.|.+... +.+.....+....+ ..++..+..+...|.. +.+ ++..++++...+++.++| ++
T Consensus 302 SKD~GlpG-fRvGviYS~ne~VvsaA~kmssf~--~vSs~tQ~~la~LLSD~~f~~~yl~en~~Rl~~rh~~~~~gL-k~ 377 (471)
T KOG0256|consen 302 SKDFGLPG-FRVGVIYSNNEDVVSAATKMSSFG--LVSSQTQYLLASLLSDEEFTREYLRENNKRLRIRHRYIVEGL-KA 377 (471)
T ss_pred ccccCCCc-eEEEEEEecChHHHHHHHHHhhcc--CCcHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHhhH-Hh
Confidence 99999 89 999999875 45555444422111 2344444433322322 111 223456666777777888 77
Q ss_pred cCCCCCCeEeeeceeEEEEecCCc-----hhHHHHHHHHHHC-CceeccC------CCCEEEEeccCcC-CHHHHHHHHH
Q psy6548 162 LSPDIVPVVRGKGLLNAIVLDKSI-----LEVYDVCIKMKDA-GLVTKPI------SNNIIRLSPALNI-TEQELREGLD 228 (242)
Q Consensus 162 l~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~l~~~-gi~~~~~------~~~~lR~~~~~~~-t~e~i~~~~~ 228 (242)
++ +.-.....|++.|+++..-- ...-++.+.+.++ ++.++|+ -++.+|++ +.+ .++.++-+++
T Consensus 378 lg--I~cl~s~AGlF~wvDlr~lL~s~tfe~El~Lw~~i~~~vklnlSpG~s~~C~EpGWFRvc--FAn~~~~t~~~am~ 453 (471)
T KOG0256|consen 378 LG--IPCLKSNAGLFCWVDLRKLLTSLTFEGELELWERILDNVKLNLSPGSSCHCHEPGWFRVC--FANMSEETLEVAMR 453 (471)
T ss_pred cC--CceeecCCeeEEEEEhHHhcCcCChHHHHHHHHHHHHhhccccCCCCcceecCCCeEEEE--eccCCHHHHHHHHH
Confidence 76 33334567899999876521 2233466666666 9999887 47899999 444 4445555999
Q ss_pred HHHHHHHH
Q psy6548 229 IIINTINT 236 (242)
Q Consensus 229 ~l~~~l~~ 236 (242)
+|...+.+
T Consensus 454 Ri~~~~~~ 461 (471)
T KOG0256|consen 454 RLKQFLDS 461 (471)
T ss_pred HHHHHHHh
Confidence 99887764
No 283
>TIGR02080 O_succ_thio_ly O-succinylhomoserine (thiol)-lyase. This family consists of O-succinylhomoserine (thiol)-lyase, one of three different enzymes designated cystathionine gamma-synthase and involved in methionine biosynthesis. In all three cases, sulfur is added by transsulfuration from Cys to yield cystathionine rather than by a sulfhydrylation step that uses H2S directly and bypasses cystathionine.
Probab=99.56 E-value=1.7e-13 Score=116.31 Aligned_cols=210 Identities=15% Similarity=0.150 Sum_probs=132.6
Q ss_pred CCCChhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEE
Q psy6548 8 KSKQVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIV 86 (242)
Q Consensus 8 ~~~d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~ 86 (242)
+-.|++. +...++++++|+++.++|++|.+++ +++|+++|+++|+++|+|++|..+... .+. ....|++
T Consensus 122 d~~d~~~l~~ai~~~tklV~l~~p~NPtG~~~d----l~~I~~la~~~g~~vvvD~a~~~~~~~-~pl-----~~gaDiv 191 (382)
T TIGR02080 122 DQGDEQALRAALAQKPKLVLIETPSNPLLRVVD----IAKICHLAKAVGAVVVVDNTFLSPALQ-NPL-----ALGADLV 191 (382)
T ss_pred CCCCHHHHHHhcCcCceEEEEECCCCCCCEecC----HHHHHHHHHHcCCEEEEECCCcccccC-Cch-----hhCCCEE
Confidence 3345666 4444567999999999999997765 889999999999999999999632111 111 1234666
Q ss_pred E--eecccc--CCccchheeEe-ChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhh
Q psy6548 87 I--LGKALS--GGLYPISAVLA-DDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELRSR 161 (242)
Q Consensus 87 ~--~sK~~~--~g~~~~g~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l~~~ 161 (242)
+ ++|.++ ++ .+.|++.. ++++++.+...........+++.+..++..++.+... .++..+++..+.+.| +.
T Consensus 192 v~S~sK~l~G~~~-~~~G~i~~~~~~~~~~l~~~~~~~g~~~sp~~a~l~lr~l~tl~~R--~~~~~~na~~~a~~L-~~ 267 (382)
T TIGR02080 192 LHSCTKYLNGHSD-VIAGAVIAKDPQVAEELAWWANNLGVTGGAFDSYLTLRGLRTLVAR--MRLQQRNAQAIVEYL-QT 267 (382)
T ss_pred EeecceeccCCCC-ceeEEEEeCCHHHHHHHHHHHHccCCCCCHHHHHHHHcccchHHHH--HHHHHHHHHHHHHHH-Hh
Confidence 6 789997 35 56888766 5667666654323333456677666655556554432 456667888888888 55
Q ss_pred cCC-------CCCC---------eEeeeceeEEEEecCCchhHHHHHHHHHHCCceec----------cC----------
Q psy6548 162 LSP-------DIVP---------VVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTK----------PI---------- 205 (242)
Q Consensus 162 l~~-------~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~----------~~---------- 205 (242)
.+. +... ...+.|.++.|++..+......|.+.|.--++.++ |.
T Consensus 268 ~p~v~~V~yP~l~~~~~~~~~~~~~~g~g~~~s~~~~~~~~~~~~f~~~l~~~~~~~s~G~~~sl~~~p~~~~~~~~~~~ 347 (382)
T TIGR02080 268 QPLVKKIYYPGLPDHPGHEIAARQQKGFGAMLSFELKGGEQTVRRFLGGLSLFTLAESLGGVESLIAHPATMTHAAMGPE 347 (382)
T ss_pred CCCeeEEECCCCCCCccHHHHHhhCCCCCceEEEEecCcHHHHHHHHHcCCcceEeccCCCCcceeECCCccCcccCCHH
Confidence 442 1111 11245778999996532334556666542222221 10
Q ss_pred -------CCCEEEEeccCcCCHHHHHHHHHHHHHHHH
Q psy6548 206 -------SNNIIRLSPALNITEQELREGLDIIINTIN 235 (242)
Q Consensus 206 -------~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~ 235 (242)
..+.+|++ ...|+.+.+++.|+++++
T Consensus 348 ~~~~~gi~~~liRls----vGlE~~~dl~~dl~~al~ 380 (382)
T TIGR02080 348 ARAEAGISDTLLRLS----VGLEDADDLIADLEQGLR 380 (382)
T ss_pred HHHhcCCCcCeEEEE----eccCCHHHHHHHHHHHHh
Confidence 24689999 445567777777777765
No 284
>PRK07811 cystathionine gamma-synthase; Provisional
Probab=99.55 E-value=1.3e-13 Score=117.45 Aligned_cols=213 Identities=15% Similarity=0.198 Sum_probs=128.4
Q ss_pred ccCCCChhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCC
Q psy6548 6 PVKSKQVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPD 84 (242)
Q Consensus 6 ~~~~~d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~ 84 (242)
.++..|++. +...++++++|++|.++|++|...+ +++|+++|++||+++|+|++|... ....+ .+...|
T Consensus 130 ~~d~~d~e~l~~~i~~~tklV~ie~p~NPtg~~~d----l~~I~~la~~~gi~lIvD~a~a~~-~~~~p-----~~~gaD 199 (388)
T PRK07811 130 PVDLSDLDAVRAAITPRTKLIWVETPTNPLLSITD----IAALAELAHDAGAKVVVDNTFASP-YLQQP-----LALGAD 199 (388)
T ss_pred EeCCCCHHHHHHhcCcCCeEEEEECCCCCcceecC----HHHHHHHHHHcCCEEEEECCCCcc-ccCCc-----hhhCCc
Confidence 345567777 4444568999999999999986654 999999999999999999998532 11111 123457
Q ss_pred EEE--eeccccC-CccchheeEeC-hhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHh
Q psy6548 85 IVI--LGKALSG-GLYPISAVLAD-DEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELRS 160 (242)
Q Consensus 85 ~~~--~sK~~~~-g~~~~g~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l~~ 160 (242)
+++ ++|+++| |-...|+++++ +++.+.+...........++..+..++..++.+ +...++.+++...+.+.| +
T Consensus 200 ivv~S~sK~l~g~~~~~gG~vv~~~~~l~~~~~~~~~~~g~~~s~~~a~l~~~~L~tl--~~R~~~~~~na~~la~~L-~ 276 (388)
T PRK07811 200 VVVHSTTKYIGGHSDVVGGALVTNDEELDEAFAFLQNGAGAVPGPFDAYLTLRGLKTL--AVRMDRHSENAEAVAEFL-A 276 (388)
T ss_pred EEEecCceeecCCCCcEEEEEEECCHHHHHHHHHHHHhcCCCCCHHHHHHHHhccCcH--HHHHHHHHHHHHHHHHHH-H
Confidence 666 6799985 21346887764 566565543212212233454443334334432 234566677888888888 5
Q ss_pred hcCC-------CCCC---------eEeeeceeEEEEecCCchhHHHHHHHHHHCCceec----------cC---------
Q psy6548 161 RLSP-------DIVP---------VVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTK----------PI--------- 205 (242)
Q Consensus 161 ~l~~-------~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~----------~~--------- 205 (242)
..+. +... ...+.|.++.|++......+..|.+.|.--.+.++ |.
T Consensus 277 ~~p~v~~V~yP~l~~~~~~~~~~~~~~g~g~~~s~~~~~~~~~~~~f~~~l~~~~~~~s~G~~~sl~~~~~~~~~~~~~~ 356 (388)
T PRK07811 277 GHPEVSTVLYPGLPSHPGHEVAARQMRGFGGMVSVRLAGGEEAARDFCARTKVFTLAESLGGVESLIEHPSAMTHASTAG 356 (388)
T ss_pred hCCCeeEEECCCCCCCchHHHHHHhcCCCCceEEEEeCCCHHHHHHHHHhCCcceeeccCCCCcceEeCCcccCcccCCH
Confidence 5442 1111 11245778999996432445566666642111111 10
Q ss_pred -----CCCEEEEeccCcCCHHHHHHHHHHHHHHHH
Q psy6548 206 -----SNNIIRLSPALNITEQELREGLDIIINTIN 235 (242)
Q Consensus 206 -----~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~ 235 (242)
.++.+|+++. .|+.+.+++.|.++++
T Consensus 357 ~~~gi~~~liR~svG----lE~~~dl~~dl~~al~ 387 (388)
T PRK07811 357 SQLEVPDDLVRLSVG----IEDVADLLADLEQALG 387 (388)
T ss_pred hhcCCCCCEEEEEeC----CCCHHHHHHHHHHHhh
Confidence 2468999944 4566677777766654
No 285
>TIGR01324 cysta_beta_ly_B cystathionine beta-lyase, bacterial. This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.
Probab=99.55 E-value=1.7e-13 Score=116.03 Aligned_cols=212 Identities=13% Similarity=0.034 Sum_probs=130.3
Q ss_pred cCCCChhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCE
Q psy6548 7 VKSKQVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDI 85 (242)
Q Consensus 7 ~~~~d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~ 85 (242)
++.++.+. +...++++++|++|.+.|++|.+.+ +++|+++|++||+++|+|++|+. +....+ .....|+
T Consensus 120 ~d~~~~e~l~~~i~~~tklV~lesp~Np~g~~~d----l~~I~~la~~~g~~livD~t~a~-g~~~~p-----l~~gaDi 189 (377)
T TIGR01324 120 YDPLIGEDIATLIQPNTKVLFLEAPSSITFEIQD----IPAIAKAARNPGIVIMIDNTWAA-GLLFKP-----LEHGVDI 189 (377)
T ss_pred ECCCCHHHHHHhcCCCceEEEEECCCCCCCcHHH----HHHHHHHHHHcCCEEEEECCCcc-ccccCc-----cccCceE
Confidence 34444455 5555668999999999999987665 99999999999999999999952 111111 1335677
Q ss_pred EE--eeccccC--CccchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhh
Q psy6548 86 VI--LGKALSG--GLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELRSR 161 (242)
Q Consensus 86 ~~--~sK~~~~--g~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l~~~ 161 (242)
++ ++|+++| + ...|+++++++.++.+...........+|..+...+..++.+. -..++..+++..+.+.| +.
T Consensus 190 vv~S~tK~l~G~~d-~~gG~v~~~~~~~~~l~~~~~~~G~~l~p~~a~~~~rgl~tl~--~R~~~~~~~a~~la~~L-~~ 265 (377)
T TIGR01324 190 SIQAGTKYLVGHSD-IMIGTVVANARTWDQLREHSYLMGQMVDADDAYTTLRGLRTLG--VRLKQHQESSLAIAKWL-SE 265 (377)
T ss_pred EEecCceeccCCCC-ceEEEEEeCHHHHHHHHHHHHHhCCCCCHHHHHHHHhhhhhHH--HHHHHHHHHHHHHHHHH-Hh
Confidence 77 5799984 3 3467888888776666532111222334544444444444332 23455666666777888 44
Q ss_pred cCC-------CCCC---------eEeeeceeEEEEecC-CchhHHHHHHHHHHCCceeccC-------------------
Q psy6548 162 LSP-------DIVP---------VVRGKGLLNAIVLDK-SILEVYDVCIKMKDAGLVTKPI------------------- 205 (242)
Q Consensus 162 l~~-------~~~~---------~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~gi~~~~~------------------- 205 (242)
.+. +... ...+.|.++.|++.. .......|.+.|.--++.++-+
T Consensus 266 ~p~v~~v~yp~l~~~p~~~~~~~~~~~~g~~~s~~l~~~~~~~~~~~~~~l~~~~~~~slG~~~sl~~~~~~~~~~~~~~ 345 (377)
T TIGR01324 266 QPEVARVLHPALPSCPGHEFWKRDFSGSSGLFSFVLQRLTQKQVHAFLDHLQLFGLGYSWGGYESLALCNQPELGHRPNI 345 (377)
T ss_pred CCCcCEEECCCCCCCccHHHHHHhccCCCceEEEEECCCCHHHHHHHHHhCCcceEeccCCCccceeecCCCCCCHHHHH
Confidence 332 1111 112457788899864 2245667777776544443211
Q ss_pred ----CCCEEEEeccCcCCHHHHHHHHHHHHHHHHH
Q psy6548 206 ----SNNIIRLSPALNITEQELREGLDIIINTINT 236 (242)
Q Consensus 206 ----~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~ 236 (242)
.++.+|+++ ..|+.+.+++.|+++++.
T Consensus 346 ~~~~~~~liR~sv----GlE~~~dl~~dl~~al~~ 376 (377)
T TIGR01324 346 KRNLEGPLIRVHI----GLENVDDLKADLKAGFEA 376 (377)
T ss_pred hccCCCCEEEEEe----CCCCHHHHHHHHHHHHhc
Confidence 125789993 445667777777777654
No 286
>PRK05355 3-phosphoserine/phosphohydroxythreonine aminotransferase; Provisional
Probab=99.55 E-value=9.7e-13 Score=110.89 Aligned_cols=198 Identities=13% Similarity=0.094 Sum_probs=139.6
Q ss_pred CCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEEee--ccccCCc
Q psy6548 19 NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILG--KALSGGL 96 (242)
Q Consensus 19 ~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~s--K~~~~g~ 96 (242)
+.++++|.+...-+++|...++ ++++ ||+++++|.+++ + .+.+..++.+ |++++| |++| +
T Consensus 139 ~~~~~~V~~th~eTstGv~~~~---i~~i------~g~l~vVDavss-~--g~~~idv~~~----d~~~~ssqK~lg-P- 200 (360)
T PRK05355 139 SDDAAYVHYTSNETIDGTEFHE---LPDT------GDVPLVADMSSD-I--LSRPIDVSKF----GLIYAGAQKNIG-P- 200 (360)
T ss_pred CCCCCEEEEccCCCcceEecCc---cccc------CCCcEEEEcCcc-c--cCccCCHHHc----cEEEEecccccc-C-
Confidence 4478999999999999966542 5444 899999999986 2 2223333333 467766 9997 4
Q ss_pred cchheeEeChhhhhccCCC-----------CCCC-CCCCCHHHHHHHHHHHHHHHhc----cHHHHHHHHHHHHHHHHHh
Q psy6548 97 YPISAVLADDEVMGTLVPG-----------THGS-TYGGNPLACKLAMTALDVILEE----NMIENAYKMGEIFRSELRS 160 (242)
Q Consensus 97 ~~~g~~~~~~~~~~~l~~~-----------~~~~-~~~~~~~~~~~a~a~l~~~~~~----~~~~~~~~~~~~l~~~l~~ 160 (242)
.++|+++.++++++++.+. .... .++.|.....+..++++.+.+. ++.++.+++.+++++.| +
T Consensus 201 ~Glg~l~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~Tp~~~~i~aL~~aL~~i~~~gG~e~i~~r~~~l~~~l~~~l-~ 279 (360)
T PRK05355 201 AGLTIVIVREDLLGRALPSIPSMLDYKTHADNDSMYNTPPTFAIYLAGLVFKWLKEQGGVAAMEKRNQEKAALLYDAI-D 279 (360)
T ss_pred CceEEEEECHHHHhhcccCCChHHHHHHHHhcCCccCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHH-H
Confidence 6689999999998887662 1111 2234455666667788888765 35677788899999999 7
Q ss_pred hcCCC-CCCeE-eeeceeEEEEecCCchhHHHHHHHHHHCCceeccCC--CCEEEEeccCcCCHHHHHHHHHHHHHHHHH
Q psy6548 161 RLSPD-IVPVV-RGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPIS--NNIIRLSPALNITEQELREGLDIIINTINT 236 (242)
Q Consensus 161 ~l~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~--~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~ 236 (242)
.++.. ..... ......+.|.++.. .+..++.+.+.++|+.+.++. .+.+|+++..++|.|||+++++.|++++..
T Consensus 280 ~~~~~~~~~~~~~rs~~v~sf~~~~~-~~~~~~~~~~~~~Gi~~~~~~~~~g~vRiS~~~~nt~eei~~l~~~l~~~~~~ 358 (360)
T PRK05355 280 SSDFYRNPVAPEDRSRMNVPFTLADE-ELDKKFLAEAKAAGLVGLKGHRSVGGMRASIYNAMPLEGVQALVDFMKEFERR 358 (360)
T ss_pred hCCCcccCCChhhcCCcEEEEEcCCh-HHHHHHHHHHHHCCCcccCCCCccCcEEEECCCCCCHHHHHHHHHHHHHHHHh
Confidence 77621 11111 12235677777664 455678788899999985553 478999999999999999999999987653
No 287
>cd00617 Tnase_like Tryptophanase family (Tnase). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to tryptophanase (Tnase) and tyrosine phenol-lyase (TPL). Tnase and TPL are active as tetramers and catalyze beta-elimination reactions. Tnase catalyzes degradation of L-tryptophan to yield indole, pyruvate and ammonia and TPL catalyzes degradation of L-tyrosine to yield phenol, pyruvate and ammonia.
Probab=99.54 E-value=2.4e-13 Score=116.40 Aligned_cols=211 Identities=17% Similarity=0.135 Sum_probs=128.2
Q ss_pred CEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccc----c------CccCcccc-c-ccCCCCCCEEEe
Q psy6548 21 NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTG----L------GRTGKLLA-I-HYEDVRPDIVIL 88 (242)
Q Consensus 21 ~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~----~------~~~g~~~~-~-~~~~~~~~~~~~ 88 (242)
++++|+++.++|++|+.+.+.+.++++.++|++||++||.|+++.. | +..+.... . ....-..|..++
T Consensus 152 ~~~~I~v~~p~N~~gG~~~s~~~l~~i~eia~~~gi~li~DaAr~~~na~~i~~r~~g~~~~si~ei~~e~~s~sd~~~m 231 (431)
T cd00617 152 NIPYIVLTITNNTAGGQPVSMANLREVRELAHKYGIPVVLDAARFAENAYFIKEREEGYRDKSIAEIAREMFSYADGCTM 231 (431)
T ss_pred CccEEEEECCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEEchhhHhhhhhhhcccccccCCCHHHHHHHhhccCCEEEE
Confidence 4889999988888755777889999999999999999999999741 1 01111110 0 000012344443
Q ss_pred e--ccccCCccchheeEeCh-hhhhccCCCC---CCC-CCC-CCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHh
Q psy6548 89 G--KALSGGLYPISAVLADD-EVMGTLVPGT---HGS-TYG-GNPLACKLAMTALDVILEENMIENAYKMGEIFRSELRS 160 (242)
Q Consensus 89 s--K~~~~g~~~~g~~~~~~-~~~~~l~~~~---~~~-~~~-~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l~~ 160 (242)
| |.++++ . .||+++++ ++++.++... .+. +++ .+...+.+...+++...+.++.....+.++++.+.| +
T Consensus 232 S~~K~~~~~-~-GG~i~~~d~~l~~~~~~~~~~~~~~~~~gG~~~r~~~A~A~gL~e~~~~~~l~~~~~~r~~l~~~L-~ 308 (431)
T cd00617 232 SAKKDGLVN-I-GGFLALRDDELYEEARQRVVLYEGFVTYGGMAGRDMEALAQGLREAVEEDYLRHRVEQVRYLGDRL-D 308 (431)
T ss_pred EeecCCCCc-c-ceEEEeCcHHHHHHHHHhccccCCccccccccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH-H
Confidence 3 444432 1 45788875 5888776421 111 122 233333332224543222233444445568888888 6
Q ss_pred hcCCCCCCeEeeeceeEEEEecCC-------chhHHHHHHHHHH-CCceeccC-----------------CCCEEEEecc
Q psy6548 161 RLSPDIVPVVRGKGLLNAIVLDKS-------ILEVYDVCIKMKD-AGLVTKPI-----------------SNNIIRLSPA 215 (242)
Q Consensus 161 ~l~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~l~~-~gi~~~~~-----------------~~~~lR~~~~ 215 (242)
+.+ +....+..+++++++.+.- .....+++..|.+ .||.+... .-..+|+..+
T Consensus 309 ~~G--~~v~~P~Ggh~v~~d~~~~~~~~~~~~~~~~~la~~L~~e~gV~~~~~g~~~~~~~~~~~~~~~~~~~~~rl~~p 386 (431)
T cd00617 309 EAG--VPIVEPAGGHAVFIDAREFLPHIPQEQFPAQALAAELYLEAGVRAVELGIFSAGRDPNTGENKYPELELVRLAIP 386 (431)
T ss_pred HCC--CCccCCCcceEEEEEhHHhcCCCCcccCcHHHHHHHHHHHcCeeEEeecceecccCCCCCcccCCccceeEEecc
Confidence 655 3333456678899887641 1247788866664 57776421 1368999754
Q ss_pred -CcCCHHHHHHHHHHHHHHHHH
Q psy6548 216 -LNITEQELREGLDIIINTINT 236 (242)
Q Consensus 216 -~~~t~e~i~~~~~~l~~~l~~ 236 (242)
...|.++++.+.+.|.++.++
T Consensus 387 rr~~t~~~~~~~~~~~~~~~~~ 408 (431)
T cd00617 387 RRVYTQDHMDYVAAAVIALYER 408 (431)
T ss_pred ccccCHHHHHHHHHHHHHHHhh
Confidence 467999999999999988876
No 288
>PRK07269 cystathionine gamma-synthase; Reviewed
Probab=99.54 E-value=9.8e-14 Score=116.97 Aligned_cols=207 Identities=17% Similarity=0.144 Sum_probs=130.6
Q ss_pred Chhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEE--
Q psy6548 11 QVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVI-- 87 (242)
Q Consensus 11 d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~-- 87 (242)
|++. +...++++++|++|.+.|++|.... +++|+++|++||+++|+|+++..- ... ...+...|+++
T Consensus 125 d~~~l~~~i~~~TklV~lesP~NPtg~~~d----i~~I~~la~~~gi~vvvD~t~~~~-~~~-----~pl~~gaDivv~S 194 (364)
T PRK07269 125 TEEELIAAIEEDTDIVYIETPTNPLMVEFD----IEKVAKLAHAKGAKVIVDNTFYSP-IYQ-----RPIELGADIVLHS 194 (364)
T ss_pred CHHHHHHhcCcCceEEEEECCCCCCCeeeC----HHHHHHHHHHcCCEEEEECCCccc-ccC-----CchhhCCcEEEec
Confidence 4566 5555678999999999999997664 999999999999999999997421 011 11244578877
Q ss_pred eeccccCC-ccchheeEe-ChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhhcCCC
Q psy6548 88 LGKALSGG-LYPISAVLA-DDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELRSRLSPD 165 (242)
Q Consensus 88 ~sK~~~~g-~~~~g~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~ 165 (242)
++|.++|. =.-.|++++ ++++++.++..........+++.+..++..++.+ +...++.++++..+.+.| +..+..
T Consensus 195 ~tK~l~g~~d~~gG~v~~~~~~l~~~~~~~~~~~G~~~s~~~a~l~~~~L~tL--~~r~~~~~~na~~~a~~L-~~~p~v 271 (364)
T PRK07269 195 ATKYLSGHNDVLAGVVVTNDLELYEKLFYNLNTTGAVLSPFDSYLLMRGLKTL--SLRMERSTANAQEVVAFL-KKSPAV 271 (364)
T ss_pred CceeccCCCcccceEEEeCcHHHHHHHHHHHHHhCCCCCHHHHHHHHcCCCcH--HHHHHHHHHHHHHHHHHH-HhCCCc
Confidence 55999852 012566666 4666666643211112345666666555555544 234567788888898999 655532
Q ss_pred CCCeEeeeceeEEEEecCCchhHHHHHHHHHHC----------CceeccC-----------------CCCEEEEeccCcC
Q psy6548 166 IVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDA----------GLVTKPI-----------------SNNIIRLSPALNI 218 (242)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----------gi~~~~~-----------------~~~~lR~~~~~~~ 218 (242)
.....++.|.++.|.+... .....|.+.+.-- ++++.|. .++.+|++ .
T Consensus 272 ~~v~ypg~gg~~sf~~~~~-~~~~~f~~~l~~~~~~~slG~~~sl~~~p~~~~~~~~~~~~r~~~Gi~~~liRls----v 346 (364)
T PRK07269 272 KEVLYTGKGGMISFKVADE-TRIPHILNSLKVFTFAESLGGVESLITYPTTQTHADIPAEVRHSYGLTDDLLRLS----I 346 (364)
T ss_pred cEEeCCCcCcEEEEEECCH-HHHHHHHHhCCcceEccCCCCcCeEeeCCcccccccCCHHHHHhcCCCCCeEEEE----e
Confidence 2223356678888888642 3455555555322 2232231 24689999 4
Q ss_pred CHHHHHHHHHHHHHHHH
Q psy6548 219 TEQELREGLDIIINTIN 235 (242)
Q Consensus 219 t~e~i~~~~~~l~~~l~ 235 (242)
..|+.+.+++-|+++++
T Consensus 347 GlE~~~dli~dl~~al~ 363 (364)
T PRK07269 347 GIEDARDLIADLKQALE 363 (364)
T ss_pred ccCCHHHHHHHHHHHhc
Confidence 45577777777777663
No 289
>PLN02414 glycine dehydrogenase (decarboxylating)
Probab=99.53 E-value=2.4e-12 Score=119.04 Aligned_cols=219 Identities=15% Similarity=0.118 Sum_probs=140.4
Q ss_pred Chhh--hcCCC--CCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEE
Q psy6548 11 QVPA--KLKSN--PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIV 86 (242)
Q Consensus 11 d~~~--~~~~~--~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~ 86 (242)
|+++ +.+.+ +++++|++..+++.+|...+ +++|.++|+++|+++++|.++.- +......-..+..|++
T Consensus 652 Dle~L~~~i~~~~~~ta~V~vt~pSn~gg~e~~----I~eI~~iah~~Galv~vDgAq~~----a~~~l~~p~~~GaD~~ 723 (993)
T PLN02414 652 NIEELRKAAEAHKDNLAALMVTYPSTHGVYEEG----IDEICDIIHDNGGQVYMDGANMN----AQVGLTSPGFIGADVC 723 (993)
T ss_pred CHHHHHHHHhccCCCeEEEEEECCCccccccch----HHHHHHHHHHcCCEEEEEecCHH----hccCcCCccccCCCEE
Confidence 5566 33433 58999999999999886655 99999999999999999999941 1111111113456888
Q ss_pred Eee--cccc-----CCccchheeEeChhhhhccCCCCC--------------CCCCC----CCHHHHHHHHHHHHHHHhc
Q psy6548 87 ILG--KALS-----GGLYPISAVLADDEVMGTLVPGTH--------------GSTYG----GNPLACKLAMTALDVILEE 141 (242)
Q Consensus 87 ~~s--K~~~-----~g~~~~g~~~~~~~~~~~l~~~~~--------------~~~~~----~~~~~~~~a~a~l~~~~~~ 141 (242)
+++ |+|+ || .++|.+.+++++...+-.... .++.. ++.+.+..++.-++.+-.+
T Consensus 724 ~~s~HK~f~~P~G~GG-Pg~G~l~~~~~L~p~lPg~~v~~~~~~~~r~~~s~iGt~~~a~~g~al~l~~A~~yi~~lG~~ 802 (993)
T PLN02414 724 HLNLHKTFCIPHGGGG-PGMGPIGVKKHLAPFLPSHPVVPTGGIPRPEKTQPLGTISAAPWGSALILPISYTYIAMMGSE 802 (993)
T ss_pred EecCCccCCcCcccCC-CCeeeEEEchhhcccCCCCccccCCCcccccCCCCcCCccchhhhhHHHHHHHHHHHHHHCHh
Confidence 864 8777 45 568889888877766542110 01111 1223333334344444334
Q ss_pred cH---HHHHHHHHHHHHHHHHhhcCCCCCCeEe-eeceeEEEEecC----CchhHHHHHHHHHHCCceecc---CCCCEE
Q psy6548 142 NM---IENAYKMGEIFRSELRSRLSPDIVPVVR-GKGLLNAIVLDK----SILEVYDVCIKMKDAGLVTKP---ISNNII 210 (242)
Q Consensus 142 ~~---~~~~~~~~~~l~~~l~~~l~~~~~~~~~-~~~~~~~~~~~~----~~~~~~~~~~~l~~~gi~~~~---~~~~~l 210 (242)
++ .++...++++++++| +.........+. ....-+.+.+.. .+.++.++.++|.+.|+.... ...+.+
T Consensus 803 Gl~~~a~~a~~nAnYl~~rL-~~~~~~~~~~~~~~~~hEfv~~~~~l~~~~g~~~~di~krL~d~Gihapt~~~pv~~~l 881 (993)
T PLN02414 803 GLTDASKIAILNANYMAKRL-EGHYPVLFRGKNGTCAHEFIIDLRPFKNTAGIEPEDVAKRLMDYGFHAPTMSWPVPGTL 881 (993)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HhhCCccccCCCCCeeeeEEEeccccccccCCCHHHHHHHHHHcCcEEeeeccccCCEE
Confidence 45 667778999999999 442211111111 111122233331 114568899999999987642 137889
Q ss_pred EEeccCcCCHHHHHHHHHHHHHHHHHHhh
Q psy6548 211 RLSPALNITEQELREGLDIIINTINTMAA 239 (242)
Q Consensus 211 R~~~~~~~t~e~i~~~~~~l~~~l~~~~~ 239 (242)
|++|+...+++|+|++++.+..+..+...
T Consensus 882 miepTE~~skeelDrf~~al~~i~~e~~~ 910 (993)
T PLN02414 882 MIEPTESESKAELDRFCDALISIREEIAD 910 (993)
T ss_pred EEEeeeeCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999988887653
No 290
>PRK08861 cystathionine gamma-synthase; Provisional
Probab=99.53 E-value=2.8e-13 Score=114.92 Aligned_cols=214 Identities=14% Similarity=0.098 Sum_probs=130.4
Q ss_pred cCCCChhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccc-cCccCcccccccCCCCCC
Q psy6548 7 VKSKQVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTG-LGRTGKLLAIHYEDVRPD 84 (242)
Q Consensus 7 ~~~~d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~-~~~~g~~~~~~~~~~~~~ 84 (242)
++..|+++ +...++++++|++|.++|++|.+.+ +++|.++|+++|+++|+|++|.. +. ..+ .....|
T Consensus 123 vd~~d~e~l~~~i~~~tklV~lesP~NPtG~v~d----l~~I~~la~~~gi~vIvDea~~~~~~--~~p-----l~~GaD 191 (388)
T PRK08861 123 VDQSDAAALDAALAKKPKLILLETPSNPLVRVVD----IAELCQKAKAVGALVAVDNTFLTPVL--QKP-----LELGAD 191 (388)
T ss_pred ECCCCHHHHHHhcCcCCeEEEEECCCCCCCcccC----HHHHHHHHHHcCCEEEEECCcccccc--CCC-----cccCCC
Confidence 34456776 5444568999999999999998776 88999999999999999999952 21 111 123467
Q ss_pred EEE--eeccccCC-ccchheeEeC-hhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHh
Q psy6548 85 IVI--LGKALSGG-LYPISAVLAD-DEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELRS 160 (242)
Q Consensus 85 ~~~--~sK~~~~g-~~~~g~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l~~ 160 (242)
+++ ++|.++|. =...|+++++ +++.+.++..........+|..+...+..++.+.- ..++..+++..+.+.| +
T Consensus 192 ivv~S~tK~l~G~~d~~gG~i~~~~~~~~~~~~~~~~~~G~~~~p~~a~l~~rgl~Tl~l--R~~~~~~~a~~~a~~L-~ 268 (388)
T PRK08861 192 FVIHSTTKYINGHSDVIGGVLITKTKEHAEELAWWGNCIGATGTPFDSYMTLRGIRTLGA--RMRVHEESAQQILAYL-Q 268 (388)
T ss_pred EEEeecceeccCCCcceeEEEEecHHHHHHHHHHHHhccCCCCChHHHHHHHhcCCCHHH--HHHHHHHHHHHHHHHH-H
Confidence 777 56999853 0346777664 55655554321222223455555444444443322 3455667777788888 5
Q ss_pred hcCC-------CCCC---------eEeeeceeEEEEecCCchhHHHHHHHHHHCCceec----------cC---------
Q psy6548 161 RLSP-------DIVP---------VVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTK----------PI--------- 205 (242)
Q Consensus 161 ~l~~-------~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~----------~~--------- 205 (242)
..+. +... ...+.|.++.|++.........|.+.|.--.+.++ |.
T Consensus 269 ~~p~v~~V~yP~l~~~p~~~~~~~~~~g~gg~~sf~~~~~~~~~~~f~~~l~l~~~~~s~G~~~sl~~~p~~~~h~~~~~ 348 (388)
T PRK08861 269 TQSLVGTIYHPSLPEHPGHEIAKKQQSGFGSMLSFEFAGSFEQLKVFVKALALFSLAESLGGVESLICHPASMTHRAMGE 348 (388)
T ss_pred hCCCeeEEECCCCCCCchHHHHHHhCCCCCceEEEEeCCCHHHHHHHHhcCCcceEccCCCCCcceeeCCCcccccccCH
Confidence 5442 1111 11245778899986432345556665542111111 10
Q ss_pred --------CCCEEEEeccCcCCHHHHHHHHHHHHHHHHHHh
Q psy6548 206 --------SNNIIRLSPALNITEQELREGLDIIINTINTMA 238 (242)
Q Consensus 206 --------~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~~ 238 (242)
..+.+|++ ...|+.+.+++.|+++++.+.
T Consensus 349 ~~~~~~gi~~~liRls----vGlE~~~dli~Dl~~al~~~~ 385 (388)
T PRK08861 349 EALAEAGVSQQLLRLS----VGLEDAQDLIADLDQAFAKAA 385 (388)
T ss_pred HHHHhcCCCCCeEEEE----eCcCCHHHHHHHHHHHHHHHH
Confidence 24689999 344577777777777777654
No 291
>PRK07582 cystathionine gamma-lyase; Validated
Probab=99.53 E-value=3.2e-13 Score=114.12 Aligned_cols=194 Identities=16% Similarity=0.102 Sum_probs=121.4
Q ss_pred CCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEE--eeccccC--C
Q psy6548 20 PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVI--LGKALSG--G 95 (242)
Q Consensus 20 ~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~--~sK~~~~--g 95 (242)
+++++|++|.++|++|.+.+ +++|+++|+++|+++++|++|... .+.. .. ....|+++ ++|+++| |
T Consensus 131 ~~t~lV~le~p~NPtg~v~d----i~~I~~~a~~~g~~lvVD~t~~~~--~~~~-p~---~~g~Divv~S~sK~l~G~~g 200 (366)
T PRK07582 131 AGADLVLAETPSNPGLDVCD----LAALAAAAHAAGALLVVDNTTATP--LGQR-PL---ELGADLVVASDTKALTGHSD 200 (366)
T ss_pred cCceEEEEECCCCCCCCccC----HHHHHHHHHHcCCEEEEECCCCCc--cccC-ch---hcCCcEEEecccccccCCCC
Confidence 57899999999999986665 999999999999999999998421 1211 11 23457666 7799974 6
Q ss_pred ccchheeEeC-hhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhhcCCC-------CC
Q psy6548 96 LYPISAVLAD-DEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELRSRLSPD-------IV 167 (242)
Q Consensus 96 ~~~~g~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~-------~~ 167 (242)
.++||++++ +++++.+...........+++.+..+...++.+. ...++.++++..+.+.| +..+.. ..
T Consensus 201 -~~~G~v~~~~~~l~~~l~~~~~~~g~~~~~~~a~l~~r~l~tl~--~R~~~~~~na~~la~~L-~~~p~v~~v~yp~l~ 276 (366)
T PRK07582 201 -LLLGYVAGRDPELMAAVERWRLLAGAIPGPFEAWLAHRSLGTLG--LRFARQCANALAVAELL-AGHPAVRGVRYPGLP 276 (366)
T ss_pred -eeEEEEEcCcHHHHHHHHHHHHHhCCCCCHHHHHHHHhccccHH--HHHHHHHHHHHHHHHHH-HhCCCccEEECCCCC
Confidence 678998874 6776666532222222345565554444444332 23477778899999999 665531 11
Q ss_pred CeE---------eeeceeEEEEecCCchhHHHHHHHHHHCCceec---c----------------CCCCEEEEeccCcCC
Q psy6548 168 PVV---------RGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTK---P----------------ISNNIIRLSPALNIT 219 (242)
Q Consensus 168 ~~~---------~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~---~----------------~~~~~lR~~~~~~~t 219 (242)
..+ .+.|.++.|++.+ .++..+.+...++... - ..++.||+++++..+
T Consensus 277 ~~p~~~~~~~~~~~~gg~~s~~~~~----~~~~~~~~~~l~~~~~~~s~G~~~sl~~~~~~~~~~~~~~liR~svGlE~~ 352 (366)
T PRK07582 277 GDPAHEVAARQMRRFGGLVSFELAD----AAAAERFVAASRLVVAATSFGGVHTSADRRARWGDAVPEGFVRLSCGIEDT 352 (366)
T ss_pred CCccHHHHHhhCCCCcceEEEEeCC----HHHHHHHHHhCCcceecccCCCccchhhhHHHcCCCCCCCeEEEEeccCCH
Confidence 111 1357788888863 2334444444444432 0 124689999777766
Q ss_pred HHHHHHHHHHHH
Q psy6548 220 EQELREGLDIII 231 (242)
Q Consensus 220 ~e~i~~~~~~l~ 231 (242)
++.++.+.++|+
T Consensus 353 ~dli~dl~~al~ 364 (366)
T PRK07582 353 DDLVADLERALD 364 (366)
T ss_pred HHHHHHHHHHHh
Confidence 555555555543
No 292
>TIGR01329 cysta_beta_ly_E cystathionine beta-lyase, eukaryotic. This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.
Probab=99.52 E-value=2.6e-13 Score=115.08 Aligned_cols=215 Identities=14% Similarity=0.156 Sum_probs=133.2
Q ss_pred ccccCCCChhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCC
Q psy6548 4 QFPVKSKQVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVR 82 (242)
Q Consensus 4 ~~~~~~~d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~ 82 (242)
+..++.+|++. +...++++++|++|.+.|++|.+.+ +++|+++|++||+++|+|++|... ....+ . ...
T Consensus 113 v~~vd~~d~~~le~~i~~~tklv~le~psnptg~v~d----l~~I~~la~~~g~~vivD~a~~~~-~~~~~--l---~~g 182 (378)
T TIGR01329 113 VVHVDTTDLDKVKAALGPKTKLVLLESPTNPLQKIVD----IRKISEMAHAQNALVVVDNTMMSP-LLCNP--L---ELG 182 (378)
T ss_pred EEEeCCCCHHHHHHhcCcCceEEEEECCCCCCCeeec----HHHHHHHHHHcCCEEEEECCCccc-ccCCh--h---hcC
Confidence 34556667777 5445678999999999999997775 999999999999999999998411 11111 1 224
Q ss_pred CCEEE--eeccccCC-ccchheeEeC-hhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Q psy6548 83 PDIVI--LGKALSGG-LYPISAVLAD-DEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSEL 158 (242)
Q Consensus 83 ~~~~~--~sK~~~~g-~~~~g~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l 158 (242)
.|+++ ++|+++|+ -...|+++++ +++.+++.+.........++..+..+...++.+ +...++..++...+.+.|
T Consensus 183 ~Di~v~S~tK~l~G~~~~~~G~v~~~~~~~~~~~~~~~~~~G~~~~~~~a~l~~~~l~tl--~~R~e~~~~na~~la~~L 260 (378)
T TIGR01329 183 ADIVYHSATKFLAGHSDVMAGVLAVKGEEIAKKVYFLQNSTGSGLAPFDCWLLLRGIKTL--AIRIEKQQENARAIAMFL 260 (378)
T ss_pred CcEEEEecceeccCCccceeEEEEeCcHHHHHHHHHHHHhcCCcCCHHHHHHHHccCCCH--HHHHHHHHHHHHHHHHHH
Confidence 57776 56999853 0347888764 555565554322112233444433222222222 223455666677777777
Q ss_pred HhhcCCC-------CCC---------eEeeeceeEEEEecCCchhHHHHHHHHHHCCceeccC-----------------
Q psy6548 159 RSRLSPD-------IVP---------VVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPI----------------- 205 (242)
Q Consensus 159 ~~~l~~~-------~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~----------------- 205 (242)
+..+.. ... ...+.+.++.|++.+. ..+.+|++.|..-++.++.+
T Consensus 261 -~~~~~v~~v~~p~l~~~p~~~l~~~~~~g~~~~~sf~~~~~-~~~~~~~~~L~~~~i~~s~G~~~sl~~~p~~~~~~~~ 338 (378)
T TIGR01329 261 -STHPRVKKVRYAGLPSHPGFHLHFSQAKGAGSVLSFETGSV-ALSKRLVEATKLFSITVSFGSVNSLISMPCFMSHASI 338 (378)
T ss_pred -HhCCCccEEECCCCCCCccHHHHHHhCCCcceEEEEEECCH-HHHHHHHHhCcCcccccCCCCCCceeeCCCccccccC
Confidence 443320 111 1124567889998432 34788999996656555422
Q ss_pred ----------CCCEEEEeccCcCCHHHHHHHHHHHHHHHHH
Q psy6548 206 ----------SNNIIRLSPALNITEQELREGLDIIINTINT 236 (242)
Q Consensus 206 ----------~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~ 236 (242)
.++.+|++ ...|+.+.+++-|+++++.
T Consensus 339 ~~~~~~~~gi~~~liR~s----vGlE~~~dl~~dl~~al~~ 375 (378)
T TIGR01329 339 PAEVREERGLPEDLVRLS----VGIEDVDDLISDLDIAFVT 375 (378)
T ss_pred CHHHHHhcCCCCCeEEEE----eccCCHHHHHHHHHHHHHh
Confidence 24689999 4456778888888887764
No 293
>PRK05968 hypothetical protein; Provisional
Probab=99.52 E-value=2.3e-13 Score=115.88 Aligned_cols=213 Identities=14% Similarity=0.034 Sum_probs=132.2
Q ss_pred cccCCCChhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCC
Q psy6548 5 FPVKSKQVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRP 83 (242)
Q Consensus 5 ~~~~~~d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~ 83 (242)
..++.+|++. +... .++++|++|.+.++.+.. ..+++|+++|++||+++|+|++|.... ...+. .++ .
T Consensus 131 ~~vd~~d~~~l~~~i-~~tklV~ie~pt~~~~~~----~dl~~i~~la~~~gi~vivD~a~a~~~-~~~p~---~~g--~ 199 (389)
T PRK05968 131 DYVDGRDEEAVAKAL-PGAKLLYLESPTSWVFEL----QDVAALAALAKRHGVVTMIDNSWASPV-FQRPI---TLG--V 199 (389)
T ss_pred EEeCCCCHHHHHHhc-ccCCEEEEECCCCCCCcH----HHHHHHHHHHHHcCCEEEEECCCcchh-ccCch---hcC--C
Confidence 3456667777 3333 468899999877665544 459999999999999999999985321 11111 123 4
Q ss_pred CEEE--eeccccC-CccchheeEeChhhhhccCCCCC-CCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Q psy6548 84 DIVI--LGKALSG-GLYPISAVLADDEVMGTLVPGTH-GSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELR 159 (242)
Q Consensus 84 ~~~~--~sK~~~~-g~~~~g~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l~ 159 (242)
|+++ ++|.++| |-.+.|+++++++++++++.... ......+++.+..++..++.+ +...++.+++...+.+.|
T Consensus 200 Divv~S~tK~l~g~~~~~gG~i~~~~~~~~~l~~~~~~~~g~~~~~~~A~~~l~~L~tl--~~r~~~~~~~a~~la~~L- 276 (389)
T PRK05968 200 DLVIHSASKYLGGHSDTVAGVVAGSKEHIARINAEAYPYLGAKLSPFEAWLLLRGLRTL--PLRMKAHEASALEIARRL- 276 (389)
T ss_pred cEEEeeccccccCCCCeEEEEEEECHHHHHHHHHHHHHhCCCCCChHHHHHHHcccCcH--HHHHHHHHHHHHHHHHHH-
Confidence 6666 6799994 21457888888888777664211 111234566555555555544 334556666788888888
Q ss_pred hhcCCCC-CCeE----------eeeceeEEEEecCCchhHHHHHHHHHHCCceeccC-----------------------
Q psy6548 160 SRLSPDI-VPVV----------RGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPI----------------------- 205 (242)
Q Consensus 160 ~~l~~~~-~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~----------------------- 205 (242)
+..+... ...+ .+.|.++.|++... .+..+|++.|...++.++.+
T Consensus 277 ~~~p~v~~v~~p~l~~~~~~~~~g~g~~~sf~~~~~-~~~~~f~~~L~~~~~~~s~G~~~slv~p~~~~~~~~~~~~~~~ 355 (389)
T PRK05968 277 KAHPVVERVCHPALANHPPAGLSGTSGLFSFIFREG-IDVRAFADALKLFRLGVSWGGHESLVVPAEVVLQQKAQPNSAA 355 (389)
T ss_pred HhCCCccEEECCCCCCChHHhCCCCceEEEEEECCH-HHHHHHHHhCCccEEecCCCCCCceeeeCcccccccCCHHHHH
Confidence 6655311 1000 13456888888754 57788999997765444311
Q ss_pred ----CCCEEEEeccCcCCHHHHHHHHHHHHHHHHH
Q psy6548 206 ----SNNIIRLSPALNITEQELREGLDIIINTINT 236 (242)
Q Consensus 206 ----~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~ 236 (242)
..+.+|+++.+. +.+.+++-|+++++.
T Consensus 356 ~~gi~~~liR~SvGlE----~~~dl~~dl~~al~~ 386 (389)
T PRK05968 356 RFGVSPRSVRLHVGLE----GTEALWADLEQALAA 386 (389)
T ss_pred hcCCCCCeEEEEeccC----CHHHHHHHHHHHHHH
Confidence 146899996655 445555555555554
No 294
>PLN02509 cystathionine beta-lyase
Probab=99.52 E-value=4.3e-13 Score=115.81 Aligned_cols=214 Identities=12% Similarity=0.148 Sum_probs=130.9
Q ss_pred ccccCCCChhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCC
Q psy6548 4 QFPVKSKQVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVR 82 (242)
Q Consensus 4 ~~~~~~~d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~ 82 (242)
+..++.+|+++ +...++++++|++|.++|++|.+.+ +++|+++|++||+++|+|++|.. +..+.+ .+..
T Consensus 199 v~~vd~~d~e~l~~ai~~~TklV~lesPsNPtG~i~D----l~~I~~lAk~~g~~lIVD~A~a~-~~~~~p-----l~~g 268 (464)
T PLN02509 199 VKRVNTTNLDEVAAAIGPQTKLVWLESPTNPRQQISD----IRKIAEMAHAQGALVLVDNSIMS-PVLSRP-----LELG 268 (464)
T ss_pred EEEeCCCCHHHHHHhCCcCCeEEEEECCCCCCCCHHH----HHHHHHHHHHcCCEEEEECCccc-cccCCh-----hhcC
Confidence 34567778887 5555678999999999999997654 99999999999999999999842 111221 1334
Q ss_pred CCEEE--eeccccCC-ccchheeEeC-hhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Q psy6548 83 PDIVI--LGKALSGG-LYPISAVLAD-DEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSEL 158 (242)
Q Consensus 83 ~~~~~--~sK~~~~g-~~~~g~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l 158 (242)
.|+++ ++|+++|. =.-.|.+.++ +.+.+.+...........++..+..++..++.+. ...++.++++.++.+.|
T Consensus 269 aDivv~S~tK~l~G~gdv~gG~v~~~~~~l~~~~~~~~~~~g~~l~p~~A~l~lr~L~tL~--~R~~r~~~nA~~la~~L 346 (464)
T PLN02509 269 ADIVMHSATKFIAGHSDVMAGVLAVKGEKLAKEVYFLQNSEGSGLAPFDCWLCLRGIKTMA--LRIEKQQENARKIAMYL 346 (464)
T ss_pred CcEEEecCcccccCCCccceeEEEeccHHHHHHHHHHHHhcCCCcCHHHHHHHHhhhhhHH--HHHHHHHHHHHHHHHHH
Confidence 67777 66999852 0225666654 3333332211011111235666655566666553 35677788888888888
Q ss_pred HhhcCCC-------CCC---------eEeeeceeEEEEecCCchhHHHHHHHHHHCCceec----------cC-------
Q psy6548 159 RSRLSPD-------IVP---------VVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTK----------PI------- 205 (242)
Q Consensus 159 ~~~l~~~-------~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~----------~~------- 205 (242)
+..+.. ... ...+.|.++.|.+.+. ..+..|.+.|.--.+.++ |.
T Consensus 347 -~~~p~V~~V~yPgL~~~p~~~l~~~~~~g~gg~~sf~~~~~-~~~~~f~~~l~l~~~a~slG~~~SLi~~p~~~sh~~~ 424 (464)
T PLN02509 347 -SSHPRVKKVYYAGLPDHPGHHLHFSQAKGAGSVFSFITGSV-ALSKHLVETTKYFSIAVSFGSVKSLISMPCFMSHASI 424 (464)
T ss_pred -hcCCCccEEECCCCCCCccHHHHHHhCCCCceEEEEEeCCH-HHHHHHHHcCCcceEcccCCCCCceeeCCcccccccC
Confidence 655421 111 1124477888888432 445566666642111111 11
Q ss_pred ----------CCCEEEEeccCcCCHHHHHHHHHHHHHHHH
Q psy6548 206 ----------SNNIIRLSPALNITEQELREGLDIIINTIN 235 (242)
Q Consensus 206 ----------~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~ 235 (242)
..+.||++ ...|+.+.+++-|+++++
T Consensus 425 ~~~~~~~~Gi~~~liRlS----vGlE~~~DLi~Dl~~Al~ 460 (464)
T PLN02509 425 PAEVREARGLTEDLVRIS----AGIEDVDDLISDLDIAFR 460 (464)
T ss_pred CHHHHHhcCCCCCeEEEE----eccCCHHHHHHHHHHHHc
Confidence 24689999 444577778887777764
No 295
>PRK09028 cystathionine beta-lyase; Provisional
Probab=99.51 E-value=4.7e-13 Score=113.56 Aligned_cols=214 Identities=14% Similarity=0.074 Sum_probs=128.7
Q ss_pred cCCCChhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCE
Q psy6548 7 VKSKQVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDI 85 (242)
Q Consensus 7 ~~~~d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~ 85 (242)
++.+|.+. +...++++++|++|.+.|++|.+.+ +++|+++|++||+++++|++|+. + ..+.-.....|+
T Consensus 131 v~~~~~e~l~~~l~~~TklV~lespsNPtg~v~d----l~~I~~la~~~g~~lvvD~t~a~----p--~~~~Pl~~GaDi 200 (394)
T PRK09028 131 YDPMIGEGIRELIRPNTKVLFLESPGSITMEVQD----VPTLSRIAHEHDIVVMLDNTWAS----P--INSRPFEMGVDI 200 (394)
T ss_pred ECCCCHHHHHHhcCcCceEEEEECCCCCCCcHHH----HHHHHHHHHHcCCEEEEECCccc----c--ccCCccccCceE
Confidence 44455555 5455678999999999999987654 99999999999999999999952 1 111122345688
Q ss_pred EE--eeccccC--CccchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhh
Q psy6548 86 VI--LGKALSG--GLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELRSR 161 (242)
Q Consensus 86 ~~--~sK~~~~--g~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l~~~ 161 (242)
++ .+|+++| . .-.|+++.+++..+.+...........+|..+......++.+.- ..++..+++..+.+.| +.
T Consensus 201 vv~S~tK~l~Gh~d-~~~G~~~~~~~~~~~l~~~~~~~G~~~~p~~a~l~~rgl~TL~l--R~~~~~~na~~la~~L-~~ 276 (394)
T PRK09028 201 SIQAATKYIVGHSD-VMLGTATANEKHWDQLREHSYLMGQCTSPDDVYLAMRGLRTLGV--RLAQHEKNALKVANWL-AT 276 (394)
T ss_pred EEEeCCeEecCCCC-EEEEEEECCHHHHHHHHHHHHhcCCCCCHHHHHHHHcccCcHHH--HHHHHHHHHHHHHHHH-hc
Confidence 77 5699983 4 34566666676655554221111123455554444444443322 3466677788888888 55
Q ss_pred cCCC-------CCC---------eEeeeceeEEEEecC-CchhHHHHHHHHHHCCcee----------ccC---------
Q psy6548 162 LSPD-------IVP---------VVRGKGLLNAIVLDK-SILEVYDVCIKMKDAGLVT----------KPI--------- 205 (242)
Q Consensus 162 l~~~-------~~~---------~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~gi~~----------~~~--------- 205 (242)
.+.. ... ...+.|.++.|++.. +......|.+.|.--.+.+ .|.
T Consensus 277 ~p~v~~V~yPgl~s~p~~~~~~~~~~g~gg~~sf~l~~~~~~~~~~f~~~l~l~~~~~slG~~~sLv~~p~~~~~~~~~~ 356 (394)
T PRK09028 277 RPEVDHVRHPAFETCPGHEFFKRDFSGSNGLFSFVLKQGDPKAVTALVEGMQHFKMGFSWGGFESLILGVFGINKLRTAT 356 (394)
T ss_pred CCCccEEECCCCCCCccHHHHHHhccCCCceEEEEECCCCHHHHHHHHHhCCcceEecccCCCcceeECCCCcCccCchh
Confidence 4421 111 112457789999963 2134556666664221111 110
Q ss_pred ----CCCEEEEeccCcCCHHHHHHHHHHHHHHHHHHh
Q psy6548 206 ----SNNIIRLSPALNITEQELREGLDIIINTINTMA 238 (242)
Q Consensus 206 ----~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~~ 238 (242)
.++.+|++.. .|+.+.+++.|+++++...
T Consensus 357 ~~~~~~~liR~svG----lEd~~dLi~Dl~~Al~~~~ 389 (394)
T PRK09028 357 NWDFSKPLIRLHIG----LEDVDDLIADLEAGFERYN 389 (394)
T ss_pred hhcCCCCeEEEEeC----cCCHHHHHHHHHHHHHHHH
Confidence 2367999944 4566666666666666543
No 296
>PRK06084 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=99.50 E-value=4.5e-13 Score=115.10 Aligned_cols=215 Identities=14% Similarity=0.147 Sum_probs=130.1
Q ss_pred cccCCCChhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCC
Q psy6548 5 FPVKSKQVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRP 83 (242)
Q Consensus 5 ~~~~~~d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~ 83 (242)
..++.+|+++ +...++++++|++|+++|++|.+.+ +++|.++|++||+++|+|++|+.. ... .......
T Consensus 126 ~~~d~~d~e~le~ai~~~tklV~lesp~NPtG~v~d----l~~I~~la~~~~i~vVvD~a~a~~-~~~-----~p~~~ga 195 (425)
T PRK06084 126 RFAAHDDIAALEALIDERTKAVFCESIGNPAGNIID----IQALADAAHRHGVPLIVDNTVATP-VLC-----RPFEHGA 195 (425)
T ss_pred EEECCCCHHHHHHHhccCCcEEEEeCCCCCCCeecC----HHHHHHHHHHcCCEEEEECCCccc-ccC-----ChhhcCC
Confidence 3466778888 5555567899999999999997775 899999999999999999999521 111 1123356
Q ss_pred CEEE--eeccccC-CccchheeEeC-hhh-hhccC-CC--------------------------------CCCCCCCCCH
Q psy6548 84 DIVI--LGKALSG-GLYPISAVLAD-DEV-MGTLV-PG--------------------------------THGSTYGGNP 125 (242)
Q Consensus 84 ~~~~--~sK~~~~-g~~~~g~~~~~-~~~-~~~l~-~~--------------------------------~~~~~~~~~~ 125 (242)
|+++ ++|.++| | .++|.++.. +.. ..... .. ..+.....++
T Consensus 196 Divv~S~tK~l~G~g-~~~gG~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~l~~ 274 (425)
T PRK06084 196 DIVVHSLTKYIGGHG-TSIGGIVVDSGKFPWAEHKERFALLNTPDPSYHGVTYTEAFGPAAFIGRCRVVPLRNMGAALSP 274 (425)
T ss_pred CEEEECchhcccccc-cceeEEEEeCCccchhhccccccccccCCcccccchhhhhcchHHHHHHHHHHHHHhcCCCCCH
Confidence 7776 7799984 4 666665543 221 00000 00 0111223344
Q ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhhcCCC-------CCC---------eEee-eceeEEEEecCCchhH
Q psy6548 126 LACKLAMTALDVILEENMIENAYKMGEIFRSELRSRLSPD-------IVP---------VVRG-KGLLNAIVLDKSILEV 188 (242)
Q Consensus 126 ~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~-------~~~---------~~~~-~~~~~~~~~~~~~~~~ 188 (242)
..+...+..++.+ +...++.++++..+.+.| +..+.. ... ...+ .|.++.|++.......
T Consensus 275 ~~a~l~lrgl~tl--~~R~~~~~~na~~la~~L-~~~p~v~~V~yP~l~~~p~~~~~~~~~~g~~gg~~s~~~~~~~~~~ 351 (425)
T PRK06084 275 FNAFLILQGLETL--ALRMERHTENALKVARYL-QQHPQVAWVKYAGLPDHPEHELARRYMGGKPASILSFGIKGGQAAG 351 (425)
T ss_pred HHHHHHHcCcCcH--HHHHHHHHHHHHHHHHHH-HhCCCccEEECCCCCCcccHHHHHHhCCCCcceEEEEEecCCHHHH
Confidence 4444444334433 334677778888888888 655531 111 1123 4778889886542345
Q ss_pred HHHHHHHHHCCceec----------cC-----------------CCCEEEEeccCcCCHHHHHHHHHHHHHHHHHH
Q psy6548 189 YDVCIKMKDAGLVTK----------PI-----------------SNNIIRLSPALNITEQELREGLDIIINTINTM 237 (242)
Q Consensus 189 ~~~~~~l~~~gi~~~----------~~-----------------~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~ 237 (242)
..|.+.|.--.+.++ |. ..+.+|++ ...|+.+.+++.|+++++..
T Consensus 352 ~~f~~~l~l~~~~~slG~~~slv~~p~~~~h~~~~~~~~~~~gi~~~liR~s----vGlEd~~dLi~dl~~Al~~~ 423 (425)
T PRK06084 352 ARFIDALKLVVRLVNIGDAKSLACHPASTTHRQLNDEELEKAGVSRDMVRLS----IGIEHIDDIIADLAQALDAS 423 (425)
T ss_pred HHHHHhCCcceeccccCCCceeeeCCCcCCcccCCHHHHHhcCCCCCeEEEE----eccCCHHHHHHHHHHHHHhh
Confidence 567766642222111 10 24689999 45567788888888887653
No 297
>PRK08574 cystathionine gamma-synthase; Provisional
Probab=99.50 E-value=5.4e-13 Score=113.38 Aligned_cols=208 Identities=13% Similarity=0.118 Sum_probs=126.9
Q ss_pred Chhh--hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEecccc-ccCccCcccccccCCCCCCEEE
Q psy6548 11 QVPA--KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQT-GLGRTGKLLAIHYEDVRPDIVI 87 (242)
Q Consensus 11 d~~~--~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~-~~~~~g~~~~~~~~~~~~~~~~ 87 (242)
|++. +.+.++++++|++|.++|++|.+++ +++|+++|++||+++|+|++|+ ++ ...+. ....|+++
T Consensus 125 d~~~l~~~i~~~~tklV~ie~p~NPtG~v~d----l~~I~~la~~~gi~livD~t~a~~~--~~~~l-----~~GaDivv 193 (385)
T PRK08574 125 STEDIIEAIKEGRTKLVFIETMTNPTLKVID----VPEVAKAAKELGAILVVDNTFATPL--LYRPL-----RHGADFVV 193 (385)
T ss_pred CHHHHHHhcCccCceEEEEECCCCCCCEecC----HHHHHHHHHHcCCEEEEECCCCccc--cCChh-----hhCCcEEE
Confidence 4555 4444448999999999999997776 8899999999999999999994 22 11111 12346666
Q ss_pred --eeccccCCccc-hheeE-eChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhhcC
Q psy6548 88 --LGKALSGGLYP-ISAVL-ADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELRSRLS 163 (242)
Q Consensus 88 --~sK~~~~g~~~-~g~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l~~~l~ 163 (242)
++|+++|.--. .|+++ .++++.+.+...........++..+..++..++.+.. ..++..+++..+.+.| +..+
T Consensus 194 ~S~sK~l~g~~d~~gG~vi~~~~~~~~~~~~~~~~~g~~~~p~~a~l~l~~l~tL~~--R~~~~~~na~~la~~L-~~~p 270 (385)
T PRK08574 194 HSLTKYIAGHNDVVGGVAVAWSGEFLEELWEWRRRLGTIMQPFEAYLVLRGLKTLEV--RFERQCRNAMAIAEFL-SEHP 270 (385)
T ss_pred eeCceeecCCCCceeEEEEECcHHHHHHHHHHHHhcCCCCCHHHHHHHHcccCcHHH--HHHHHHHHHHHHHHHH-HcCC
Confidence 77999852022 45444 4677777665322222234456655555555554432 4566667888888888 5544
Q ss_pred C-------CCCCe---------E--eeeceeEEEEecCCchhHHHHHHHHHHCCceec----------cC----------
Q psy6548 164 P-------DIVPV---------V--RGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTK----------PI---------- 205 (242)
Q Consensus 164 ~-------~~~~~---------~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~----------~~---------- 205 (242)
. +.... . .+.|.++.|++......+..|.+.|.=-.+.++ |.
T Consensus 271 ~v~~V~yP~l~~~~~~~~~~~~~~~~g~g~~~s~~l~~~~~~~~~~~~~l~l~~~~~s~G~~~sl~~~~~~~~~~~~~~~ 350 (385)
T PRK08574 271 KVAEVYYPGLPSDPYHGVAKRLFGKDLYGGVVSFRVKGGRDAVLKFLRSLKLIKPSPSLGGVESLATYPVKSAASPIPEE 350 (385)
T ss_pred CcCEEECCCCCCCchHHHHHHhCCCCCcceEEEEEeCCCHHHHHHHHHcCCcceEccCCCCCcceeeCCCcCCcccCCHH
Confidence 2 11111 1 135778899986432445666666642221111 10
Q ss_pred -------CCCEEEEeccCcCCHHHHHHHHHHHHHHHHH
Q psy6548 206 -------SNNIIRLSPALNITEQELREGLDIIINTINT 236 (242)
Q Consensus 206 -------~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~ 236 (242)
.++.+|++ ...|+.+.+++-|+++++.
T Consensus 351 ~~~~~gi~~~liR~s----vGlE~~~dli~dl~~al~~ 384 (385)
T PRK08574 351 DRKALGITEDLVRLS----VGLEDVEDLIEDLDQALGS 384 (385)
T ss_pred HHHhcCCCCCeEEEE----eccCCHHHHHHHHHHHHhc
Confidence 14689999 4456677788888777754
No 298
>KOG2862|consensus
Probab=99.48 E-value=3.2e-12 Score=101.44 Aligned_cols=211 Identities=16% Similarity=0.156 Sum_probs=149.1
Q ss_pred hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEE--eeccc
Q psy6548 15 KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVI--LGKAL 92 (242)
Q Consensus 15 ~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~--~sK~~ 92 (242)
+.+..+++.++++....+.+|-..+ .+....++|++|++++++|.+-+ + .|..|.++.|++ |+.. --|++
T Consensus 136 ~~lsqh~p~~vfv~hgdsSTgV~q~---~~~~~g~lc~k~~~lllVD~VaS-l--ggt~F~mDewgV--DvaytgSQKaL 207 (385)
T KOG2862|consen 136 EKLSQHKPKAVFVTHGDSSTGVLQD---LLAISGELCHKHEALLLVDTVAS-L--GGTEFEMDEWGV--DVAYTGSQKAL 207 (385)
T ss_pred HHHHhcCCceEEEEecCccccccch---HHHHHHHHhhcCCeEEEEechhh-c--CCccceehhhcc--cEEEecchhhc
Confidence 5566789999999999999995444 47778899999999999999876 3 445678888877 5444 33999
Q ss_pred cCCccchheeEeChhhhhccCCCCC-----------------------CCCCCCCHHHHHHHHHHHHHHHhc---cHHHH
Q psy6548 93 SGGLYPISAVLADDEVMGTLVPGTH-----------------------GSTYGGNPLACKLAMTALDVILEE---NMIEN 146 (242)
Q Consensus 93 ~~g~~~~g~~~~~~~~~~~l~~~~~-----------------------~~~~~~~~~~~~~a~a~l~~~~~~---~~~~~ 146 (242)
+++ -+++.+..++...+.++.... .+..+.+.-.+.+.+++|..+-++ +..++
T Consensus 208 ~aP-~GLsiisfS~ka~~~~~~rK~~~~~~yFd~~~~~~~wgc~~e~~~yhhT~pv~lly~Lr~AL~~I~eeGL~~~~~r 286 (385)
T KOG2862|consen 208 GAP-AGLSIISFSDKALEAIRDRKTKPVSFYFDILRLGNFWGCDGEPRAYHHTPPVQLLYSLRAALALIAEEGLENSWRR 286 (385)
T ss_pred CCC-CCcceeecCHHHHHHHhhccCCceEEEEeHHhhcchhccCCcccccccCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 966 667778888888888764311 011133344566667777766554 45677
Q ss_pred HHHHHHHHHHHHHhhcCCC--CCCeEeeeceeEEEEecCCchhHHHHHHHHHHC-Cceec----cCCCCEEEEec-cCcC
Q psy6548 147 AYKMGEIFRSELRSRLSPD--IVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDA-GLVTK----PISNNIIRLSP-ALNI 218 (242)
Q Consensus 147 ~~~~~~~l~~~l~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-gi~~~----~~~~~~lR~~~-~~~~ 218 (242)
.+++.++++..| +.++.. ...+....-....+.++.. .|..+++.+++.+ ++.+. +..+..+||.+ ....
T Consensus 287 H~e~s~~l~~~l-~~~GLq~fv~~e~~rlptvttv~vp~g-vDw~dVv~~~~~~~~vei~gglg~~~gKv~RIGl~gcna 364 (385)
T KOG2862|consen 287 HREMSKWLKLSL-EALGLQLFVVDEELRLPTVTTVKVPYG-VDWKDVVAYAMSHYVVEIGGGLGPTVGKVFRIGLLGCNA 364 (385)
T ss_pred HHHHHHHHHHHH-HHhCccceecChhhccCcceeeecCCC-CCHHHHHHHHHHhcCEEeccccCCCcccEEEEEEeeccC
Confidence 778899999999 776532 1222222333445666665 7899999999998 44443 33578999975 3445
Q ss_pred CHHHHHHHHHHHHHHHHH
Q psy6548 219 TEQELREGLDIIINTINT 236 (242)
Q Consensus 219 t~e~i~~~~~~l~~~l~~ 236 (242)
+.|.|+..++.|..++++
T Consensus 365 ~~e~i~~v~~ll~~alq~ 382 (385)
T KOG2862|consen 365 NVEYIDNVVELLKLALQR 382 (385)
T ss_pred CcHHHHHHHHHHHHHHhh
Confidence 778999999999888876
No 299
>PRK08064 cystathionine beta-lyase; Provisional
Probab=99.48 E-value=1e-12 Score=112.03 Aligned_cols=213 Identities=16% Similarity=0.132 Sum_probs=127.6
Q ss_pred ccccCCCChhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCC
Q psy6548 4 QFPVKSKQVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVR 82 (242)
Q Consensus 4 ~~~~~~~d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~ 82 (242)
+..+|.+|+++ +...++++++|++|.++|++|.+.+ +++|.++|+++|+++|+|++|..+. ...+ . ...
T Consensus 120 v~~v~~~d~~~l~~~l~~~tklV~l~~p~NptG~~~d----l~~I~~la~~~g~~vvvD~a~~~~~-~~~~--~---~~g 189 (390)
T PRK08064 120 HTFVDMTNLEEVAQNIKPNTKLFYVETPSNPLLKVTD----IRGVVKLAKAIGCLTFVDNTFLTPL-LQKP--L---DLG 189 (390)
T ss_pred EEEECCCCHHHHHHhcCCCceEEEEECCCCCCcEecc----HHHHHHHHHHcCCEEEEECCCCccc-ccCc--h---hhC
Confidence 44567777887 5555668999999999999997765 8999999999999999999985321 1111 1 223
Q ss_pred CCEEE--eeccccCCc-cchheeEe-ChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Q psy6548 83 PDIVI--LGKALSGGL-YPISAVLA-DDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSEL 158 (242)
Q Consensus 83 ~~~~~--~sK~~~~g~-~~~g~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l 158 (242)
.|+++ ++|.++|.- .-.|+++. ++++++.+.+....+....++.....+...++.+ +...++..+++..+.+.|
T Consensus 190 ~Divv~S~tK~~~G~~~~laG~~v~~~~~~~~~l~~~~~~~g~~~~~~~a~l~~~gl~tl--~~R~~~~~~~a~~la~~L 267 (390)
T PRK08064 190 ADVVLHSATKFLAGHSDVLAGLAVVKDEELAQKLYFLQNSFGAVLGVQDCWLVLRGLKTL--HVRLEHSSETANKIALYL 267 (390)
T ss_pred CcEEEeecceeccCCccceeEEEEeCCHHHHHHHHHHHHhcCCCCCHHHHHHHHcccCcH--HHHHHHHHHHHHHHHHHH
Confidence 57766 679997430 22465555 4677777765333333333333333222223322 223455566666777777
Q ss_pred HhhcCC-------CCCC---------eEeeeceeEEEEecCCchhHHHHHHHHHHCCce---eccC--------------
Q psy6548 159 RSRLSP-------DIVP---------VVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLV---TKPI-------------- 205 (242)
Q Consensus 159 ~~~l~~-------~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~---~~~~-------------- 205 (242)
+..+. .... ...+.|.++.|++.+. .+...|.+.+ ++. ++.+
T Consensus 268 -~~~~~v~~v~yp~l~~~p~~~~~~~~~~g~gg~~sf~~~~~-~~~~~f~~~l---~l~~~~~s~G~~~sl~~~~~~~~h 342 (390)
T PRK08064 268 -QEHPKVQNVYYPGLQTHLGFDIQQSQATSAGAVLSFTLQSE-EAVRQFVSHV---KLPVFAVSLGAVESILSYPAKMSH 342 (390)
T ss_pred -hcCCCcceEECCCCCCCccHHHHHHhCCCcceEEEEEECCH-HHHHHHHHhC---CcceEcccCCCCcceeECCccccc
Confidence 54432 1110 1234577888988643 3344444443 431 1100
Q ss_pred -------------CCCEEEEeccCcCCHHHHHHHHHHHHHH
Q psy6548 206 -------------SNNIIRLSPALNITEQELREGLDIIINT 233 (242)
Q Consensus 206 -------------~~~~lR~~~~~~~t~e~i~~~~~~l~~~ 233 (242)
..+.+|+|+.+..+++.++.+.++|+++
T Consensus 343 ~~~~~~~~~~~gi~~~liR~SvGle~~~dli~dl~~Al~~~ 383 (390)
T PRK08064 343 AAMPKEERDERGITDGLLRLSVGLENVDDLIADFEQALSYV 383 (390)
T ss_pred ccCCHHHHHhcCCCCCeEEEEeccCCHHHHHHHHHHHHHhc
Confidence 2578999988887777777777777653
No 300
>TIGR03235 DNA_S_dndA cysteine desulfurase DndA. This model describes DndA, a protein related to IscS and part of a larger family of cysteine desulfurases. It is encoded, typically, divergently from a conserved, sparsely distributed operon for sulfur modification of DNA. This modification system is designated dnd, after the phenotype of DNA degradation during electrophoresis. The system is sporadically distributed in bacteria, much like some restriction enzyme operons. DndB is described as a putative ATPase.
Probab=99.47 E-value=7.9e-13 Score=111.41 Aligned_cols=180 Identities=13% Similarity=0.132 Sum_probs=115.2
Q ss_pred Chhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEEee
Q psy6548 11 QVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILG 89 (242)
Q Consensus 11 d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~s 89 (242)
|+++ +...++++++++++.+++++|.+.+ +++|.++|++||+++++|++|. ++.. ....+ ....|++++|
T Consensus 127 d~~~l~~~l~~~~~lv~~~~~~n~tG~~~~----~~~I~~l~~~~~~~~ivD~a~~-~g~~--~~~~~--~~~~D~~~~s 197 (353)
T TIGR03235 127 DVDELADAIRPDTLLVSIMHVNNETGSIQP----IREIAEVLEAHEAFFHVDAAQV-VGKI--TVDLS--ADRIDLISCS 197 (353)
T ss_pred CHHHHHHhCCCCCEEEEEEcccCCceeccC----HHHHHHHHHHcCCEEEEEchhh-cCCc--ccccc--ccCCCEEEee
Confidence 4555 4444567899999999999998876 8999999999999999999986 2222 12222 2346888866
Q ss_pred --ccccCCccchheeEeChhhhhc--cCCCCCC-------CCCCCCHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHH
Q psy6548 90 --KALSGGLYPISAVLADDEVMGT--LVPGTHG-------STYGGNPLACKLAMTALDVILE--ENMIENAYKMGEIFRS 156 (242)
Q Consensus 90 --K~~~~g~~~~g~~~~~~~~~~~--l~~~~~~-------~~~~~~~~~~~~a~a~l~~~~~--~~~~~~~~~~~~~l~~ 156 (242)
|+++ + .++|+++.+++.... +.+...+ ...+.+.....+..++++.+.. ++..++++++.+.+++
T Consensus 198 ~~K~~g-p-~g~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~ 275 (353)
T TIGR03235 198 GHKIYG-P-KGIGALVIRKRGKPKAPLKPIMFGGGQERGLRPGTLPVHLIVGMGEAAEIARRNAQAWEVKLRAMRNQLRD 275 (353)
T ss_pred hhhcCC-C-CceEEEEEccCcccccccCceeeCCCCcCccccCCCChHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 9865 3 457888888764322 2321111 1223445555566667776643 3567888888888888
Q ss_pred HHHhhcCCCCCCeE-eeeceeEEEEecCCchhHHHHHHHHHHCCceeccC
Q psy6548 157 ELRSRLSPDIVPVV-RGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPI 205 (242)
Q Consensus 157 ~l~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~ 205 (242)
.| +..+-...... .....++.+.++. .+.+++.++|. ++|.++++
T Consensus 276 ~l-~~~g~~~~~~~~~~~~~i~~~~~~~--~~~~~v~~~L~-~~i~v~~g 321 (353)
T TIGR03235 276 AL-QTLGVKLNGDPAETIPHILNFSIDG--VNSEALIVNLR-ADAAVSTG 321 (353)
T ss_pred Hh-ccCCeEEeCCcccccCCEEEEEeCC--cCHHHHHHHHh-CCeEEEch
Confidence 88 55432111111 1123345555544 46788888885 48888765
No 301
>cd00611 PSAT_like Phosphoserine aminotransferase (PSAT) family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major group in this CD corresponds to phosphoserine aminotransferase (PSAT). PSAT is active as a dimer and catalyzes the conversion of phosphohydroxypyruvate to phosphoserine.
Probab=99.46 E-value=8.9e-12 Score=105.07 Aligned_cols=200 Identities=13% Similarity=0.045 Sum_probs=133.6
Q ss_pred cCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEEeeccccCC
Q psy6548 16 LKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGG 95 (242)
Q Consensus 16 ~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~sK~~~~g 95 (242)
...++++++|.+....+.+|...+ ++++.||+++++|.+++ +| +.+..++.++ ..+...-|.+| +
T Consensus 133 ~~~~~~~~lV~~~h~~t~tG~~~~---------~i~~~~g~~~~VDa~qs-~g--~~~idv~~~~--~~~ss~~K~lG-P 197 (355)
T cd00611 133 WDLAPDAAYVHYCSNETIHGVEFD---------EVPDTGGVPLVADMSSN-IL--SRPIDVSKFG--VIYAGAQKNLG-P 197 (355)
T ss_pred cCCCCCCCEEEEeCCcccccEEcc---------eecccCCCeEEEEcccc-cc--CCCCCHHHhC--EEEeecccccC-C
Confidence 344678999999999999997543 45566999999999996 22 2223333333 12222349886 5
Q ss_pred ccchheeEeChhhhhccCCCC-----------CCCCC-CCCHHHHHHHHHHHHHHHhc----cHHHHHHHHHHHHHHHHH
Q psy6548 96 LYPISAVLADDEVMGTLVPGT-----------HGSTY-GGNPLACKLAMTALDVILEE----NMIENAYKMGEIFRSELR 159 (242)
Q Consensus 96 ~~~~g~~~~~~~~~~~l~~~~-----------~~~~~-~~~~~~~~~a~a~l~~~~~~----~~~~~~~~~~~~l~~~l~ 159 (242)
.++|+++.++++.+++.+.. ...++ +.|.....+..++++.+... .+.++.+++.+++++.|
T Consensus 198 -~G~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Tpn~~~i~~L~aal~~l~~~gg~e~i~~~~~~l~~~l~~~l- 275 (355)
T cd00611 198 -AGVTVVIVRKDLLGKARKITPSMLNYKTHADNNSLYNTPPTFAIYMMGLVLKWLKEQGGVEAMEKRNRQKAQLLYDTI- 275 (355)
T ss_pred -CceEEEEECHHHHhhcccCCCCcccHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHH-
Confidence 67899999999888766531 01112 33445666667788887654 35677788999999999
Q ss_pred hhcCCC--CCCeEeeec-eeEEEEecCCchhHHHHHHHHHHCCceeccCC--CCEEEEeccCcCCHHHHHHHHHHHHHH
Q psy6548 160 SRLSPD--IVPVVRGKG-LLNAIVLDKSILEVYDVCIKMKDAGLVTKPIS--NNIIRLSPALNITEQELREGLDIIINT 233 (242)
Q Consensus 160 ~~l~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~--~~~lR~~~~~~~t~e~i~~~~~~l~~~ 233 (242)
++++.- ........+ ..+.|.++.. ....++.+.+.++|++..++. .+.+|+++..++|+|||+++++.|+++
T Consensus 276 ~~~~gl~~~~~~~~~rs~~vvsf~~~~~-~l~~~~~~~~~r~G~~~~~~~~~~g~vR~S~~~~nt~edi~~l~~al~~~ 353 (355)
T cd00611 276 DNSNGFYRGPVDKRARSRMNVPFRLGKE-ELEKEFLKEAEAAGMIGLKGHRSVGGIRASIYNALSLEGVQALADFMKEF 353 (355)
T ss_pred HhCccccccCCCHHHcCceEEEEEcCCh-hhhHHHHHHHHHCCCcccCCCcccCeEEEEccCCCCHHHHHHHHHHHHHH
Confidence 777321 111111123 4577776653 233566678889999854442 478999999999999999999999874
No 302
>TIGR02379 ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase. This family consists of TDP-4-keto-6-deoxy-D-glucose transaminases, the WecE (formerly RffA) protein of enterobacterial common antigen (ECA) biosynthesis, from enterobacteria. It also includes closely matching sequence from species not expected to make ECA, but which contain other genes for the biosynthesis of TDP-4-keto-6-deoxy-D-Glc, an intermediate in the biosynthesis of other compounds as well and the substrate of WecA. This family belongs to the DegT/DnrJ/EryC1/StrS aminotransferase family (pfam01041).
Probab=99.46 E-value=2e-11 Score=103.58 Aligned_cols=203 Identities=13% Similarity=0.178 Sum_probs=126.8
Q ss_pred hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccC-ccCcccccccCCCCCCEEEee----
Q psy6548 15 KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLG-RTGKLLAIHYEDVRPDIVILG---- 89 (242)
Q Consensus 15 ~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~-~~g~~~~~~~~~~~~~~~~~s---- 89 (242)
+...++++++|+ |+ +++|...+ +++|.++|++||+++|+|++|+-.. ..|. ..+...++.+||
T Consensus 113 e~~i~~~tk~Ii--p~-~~~G~~~d----~~~I~~la~~~~i~vIeDaa~~~g~~~~~~-----~~g~~~~~~~fSf~~~ 180 (376)
T TIGR02379 113 ESAITHRTKAIV--PV-HYAGVACD----MDTIMALANKHQLFVIEDAAQGVMSTYKGR-----ALGSIGHLGTFSFHET 180 (376)
T ss_pred HHhcCcCceEEE--Ee-CCCCCccC----HHHHHHHHHHCCCEEEEECccccCCccCCc-----ccCCCCCEEEEeCCCC
Confidence 444456788886 33 34665554 8899999999999999999996321 1121 223344788888
Q ss_pred ccccCCccchheeEeC-hhhhhccCCCC---------------------CCCCCCCCHHHHHHHHHHHHHHHhccHHHHH
Q psy6548 90 KALSGGLYPISAVLAD-DEVMGTLVPGT---------------------HGSTYGGNPLACKLAMTALDVILEENMIENA 147 (242)
Q Consensus 90 K~~~~g~~~~g~~~~~-~~~~~~l~~~~---------------------~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~ 147 (242)
|.+..| .+.|+++.+ ++++++++... .++++..+.+.++.+++.++.+ +++.+..
T Consensus 181 K~l~~g-~~gG~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~n~~~~~~~Aa~g~~qL~~l--~~~~~~r 257 (376)
T TIGR02379 181 KNYTSG-GEGGALLINDQAFIERAEIIREKGTNRSQFFRGEVDKYTWRDIGSSYLPSELQAAYLWAQLEQA--DRINQDR 257 (376)
T ss_pred CcCccc-CCceEEEECCHHHHHHHHHHHHhCCCCccccccCCCcceeeeecccCCccHHHHHHHHHHHHHh--HHHHHHH
Confidence 988866 578887765 67777665321 1223334445555555555544 3355666
Q ss_pred HHHHHHHHHHHHhhcCC-C---CC---CeEeeeceeEEEEecCCchhHHHHHHHHHHCCceeccC----C----------
Q psy6548 148 YKMGEIFRSELRSRLSP-D---IV---PVVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPI----S---------- 206 (242)
Q Consensus 148 ~~~~~~l~~~l~~~l~~-~---~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~----~---------- 206 (242)
+++.++..+.| +.+.. . .. ........++++.++.. .+.+++.++|.++||.+++. .
T Consensus 258 ~~~~~~y~~~L-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~r~~l~~~L~~~gI~~~~~~~p~~~~~~~~~~~~ 335 (376)
T TIGR02379 258 LATWQLYQDAL-KPLEEKGIIELPSIPNGCQHNAHMFYIKLKDE-DDRNELIKYLKEQEIMAVFHYVPLHSSPAGRYFGR 335 (376)
T ss_pred HHHHHHHHHHh-ccCCcCCeeeCCCCCCCCeeeeEEEEEEECCc-CCHHHHHHHHHHCCCCccccCcCCCcchhHHhhCC
Confidence 67777777777 54431 0 11 11111223445666543 46789999999999987621 0
Q ss_pred ------------CCEEEEeccCcCCHHHHHHHHHHHHHHH
Q psy6548 207 ------------NNIIRLSPALNITEQELREGLDIIINTI 234 (242)
Q Consensus 207 ------------~~~lR~~~~~~~t~e~i~~~~~~l~~~l 234 (242)
...+.+=++...+++|+++.++.|++.+
T Consensus 336 ~~~~~p~~~~~~~~~l~LP~~~~l~~~~~~~i~~~i~~~~ 375 (376)
T TIGR02379 336 FHGEDIYTTKESERLVRLPLYYGLSKEDQARVIQTICDYL 375 (376)
T ss_pred CCCCChHHHHHHhceEEccCCCCCCHHHHHHHHHHHHHHh
Confidence 1245555567789999999999998754
No 303
>PLN02724 Molybdenum cofactor sulfurase
Probab=99.46 E-value=9.6e-12 Score=114.84 Aligned_cols=206 Identities=14% Similarity=0.153 Sum_probs=139.2
Q ss_pred CCEEEEEEcccccCCCcccCCHHHHHHHHHHHHh---h-----CCEEEEeccccccCccCcccccccCCCCCCEEEee--
Q psy6548 20 PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQ---Y-----NVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILG-- 89 (242)
Q Consensus 20 ~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~---~-----~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~s-- 89 (242)
+++++|.+..+.|.+|.+.| ++++..+++. + ++++++|.+|+ ++.. +. +...+.+|++++|
T Consensus 191 ~~t~LVa~~~vsN~tG~i~p----i~~i~~~~~~~~~~~~~~g~~~v~vDaaQ~-~g~~--pi--Dv~~~~~Dfl~~S~H 261 (805)
T PLN02724 191 EAYNLFAFPSECNFSGAKFP----LDLVKLIKDNQHSNFSKSGRWMVLLDAAKG-CGTS--PP--DLSRYPADFVVVSFY 261 (805)
T ss_pred CCcceEEEEccccCCCCcCC----HHHHHHHHHhcccccccCcceEEEeehhhh-cCCC--CC--ChhhcCCCEEEEecc
Confidence 46789999999999998888 5544444432 2 36799999995 2211 12 2223467998876
Q ss_pred ccccCCccchheeEeChhhhhccCCCCCCC-C---------C--------------CCCHHHHHHHHHHHHHHHh---cc
Q psy6548 90 KALSGGLYPISAVLADDEVMGTLVPGTHGS-T---------Y--------------GGNPLACKLAMTALDVILE---EN 142 (242)
Q Consensus 90 K~~~~g~~~~g~~~~~~~~~~~l~~~~~~~-~---------~--------------~~~~~~~~~a~a~l~~~~~---~~ 142 (242)
|++|++ .++|+++.++++.+.+.+...++ + + +.|..+.++..++++.+.. +.
T Consensus 262 K~~GgP-~G~G~L~vr~~~~~~l~p~~~GGg~~~~~~~~~~~~~~~~~~~~rfE~GT~n~~~i~~l~aal~~l~~ig~~~ 340 (805)
T PLN02724 262 KIFGYP-TGLGALLVRRDAAKLLKKKYFGGGTVAASIADIDFVKRRERVEQRFEDGTISFLSIAALRHGFKLLNRLTISA 340 (805)
T ss_pred eeccCC-CCceEEEEehhhhhhhcCCccCCCceEEEecccceeeccccHHHHhcCCCcchhHHHHHHHHHHHHHHhChHH
Confidence 999866 67999999988887777643332 1 0 2345566666677887765 45
Q ss_pred HHHHHHHHHHHHHHHHHhhcCC--C-----CCCe------EeeeceeEEEEecCCc---hhHHHHHHHHHHCCceeccC-
Q psy6548 143 MIENAYKMGEIFRSELRSRLSP--D-----IVPV------VRGKGLLNAIVLDKSI---LEVYDVCIKMKDAGLVTKPI- 205 (242)
Q Consensus 143 ~~~~~~~~~~~l~~~l~~~l~~--~-----~~~~------~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~gi~~~~~- 205 (242)
+.++.+++.+++.+.| +.+.. + +... ....+.++.|.+.... ....++...+-+.||.++.+
T Consensus 341 I~~~~~~L~~~l~~~L-~~l~~~~g~~~v~iyg~~~~~~~~~~r~~ivsFnv~~~~~~~v~~~~v~~l~~~~gI~vR~G~ 419 (805)
T PLN02724 341 IAMHTWALTHYVANSL-RNLKHGNGAPVCVLYGNHTFKLEFHIQGPIVTFNLKRADGSWVGHREVEKLASLSGIQLRTGC 419 (805)
T ss_pred HHHHHHHHHHHHHHHH-HhccCCCCCeEEEEcCCCCCCCCcccccCEEEEEEEcCCCCEeCHHHHHHHHHhcCcEEeecc
Confidence 7788999999999999 76642 1 1110 1235667777776531 11333444445678888532
Q ss_pred --------------------------------------CCCEEEEeccCcCCHHHHHHHHHHHHHHHHH
Q psy6548 206 --------------------------------------SNNIIRLSPALNITEQELREGLDIIINTINT 236 (242)
Q Consensus 206 --------------------------------------~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~ 236 (242)
..+.+|+|+++++|.+|++++++.|++....
T Consensus 420 ~Ca~~~~~~~lg~~~~~l~~~~~~~~~c~~~~~~~~~~~~G~vRvS~g~ynt~eDvd~lv~~l~~~~~~ 488 (805)
T PLN02724 420 FCNPGACAKYLGLSHKDLQANFEAGHVCWDDQDVIHGRPTGAVRVSFGYMSTFEDCQKFIDFIISSFVS 488 (805)
T ss_pred ccCchHHHHHcCCCHHHHHHHhhcCCccCchhheecCcccceEEEEcCccCCHHHHHHHHHHHHHHhhc
Confidence 0277999999999999999999999986643
No 304
>COG2008 GLY1 Threonine aldolase [Amino acid transport and metabolism]
Probab=99.45 E-value=1.2e-12 Score=106.23 Aligned_cols=206 Identities=16% Similarity=0.143 Sum_probs=130.2
Q ss_pred CCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccc--cCccCcccccccCCCCCCEEE--eeccccCC
Q psy6548 20 PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTG--LGRTGKLLAIHYEDVRPDIVI--LGKALSGG 95 (242)
Q Consensus 20 ~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~--~~~~g~~~~~~~~~~~~~~~~--~sK~~~~g 95 (242)
..+..++.+..++.+| .+++.++|++|.++|++||+.|..|.+--. ....+ .....+.-..|.++ +||+.+
T Consensus 129 ~~~~~~~~e~~~te~G-tVy~l~el~~i~~~~k~~~l~LHmDGAR~~nA~valg--~~~~~~~~~~D~v~~~~tK~g~-- 203 (342)
T COG2008 129 APTPLAVLENTATEGG-TVYPLDELEAISAVCKEHGLPLHMDGARLANALVALG--VALKTIKSYVDSVSFCLTKGGG-- 203 (342)
T ss_pred CCCceEEEeeccCCCc-eecCHHHHHHHHHHHHHhCCceeechHHHHHHHHHcC--CCHHHHHhhCCEEEEecccCCc--
Confidence 4677888888888777 566778899999999999999999987632 11122 11122223457666 668777
Q ss_pred ccchhe-eEeChhhhhccCCC--CCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhhcCCCCCCeEee
Q psy6548 96 LYPISA-VLADDEVMGTLVPG--THGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELRSRLSPDIVPVVRG 172 (242)
Q Consensus 96 ~~~~g~-~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~ 172 (242)
++.|. ++++.++++.+... ..++-++-..+..+....+|+..--.....+..+++++|.+.+ ...+. .....+.
T Consensus 204 -~~~gAiv~gn~~~~~~a~~~rK~~Ggl~~k~r~laA~~~~~l~~~~~~~~~~Han~mA~~La~~~-~~~~G-~~~~~~~ 280 (342)
T COG2008 204 -APVGAIVFGNRDFAKRARRWRKRAGGLMRKARFLAAQGLYALEDDVWRLAADHANAMAARLAEGL-EAKPG-VKLAFPV 280 (342)
T ss_pred -ceeeeEEEcCHHHHHHHHHHHHHhcccHhhhhHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHhh-hhcCC-ceeccCC
Confidence 45565 45788887766532 2444444444444444444442111112233444488888888 53321 2222336
Q ss_pred eceeEEEEecCCchhHHHHHHHHHHCCceeccCCCCEEEEeccCcCCHHHHHHHHHHHHHHH
Q psy6548 173 KGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTI 234 (242)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~lR~~~~~~~t~e~i~~~~~~l~~~l 234 (242)
..+++.+.+++...+.......+...|++..+.+ ..+||..|...+++++++++..+++..
T Consensus 281 ~tN~vf~~l~~~~i~~l~~~~~~~~~~~~~~~~~-~~vRfvts~a~~~edv~~~~~~~~~~~ 341 (342)
T COG2008 281 ETNMVFVRLPESAIEALRLAGALFYRGVLIGAHG-EIVRFVTSWATSEEDVDELVAAIKALL 341 (342)
T ss_pred cccEEEEECChHHHHHHHhhchhheeeeeccCCC-ceEEEEeeccCCHHHHHHHHHHHHHhh
Confidence 6788898888753334445555556666665543 579999999999999999999887653
No 305
>TIGR01326 OAH_OAS_sulfhy OAH/OAS sulfhydrylase. This model describes a distinct clade of the Cys/Met metabolism pyridoxal phosphate-dependent enzyme superfamily. Members include examples of OAH/OAS sulfhydrylase, an enzyme with activity both as O-acetylhomoserine (OAH) sulfhydrylase (EC 2.5.1.49) and O-acetylserine (OAS) sulphydrylase (EC 2.5.1.47). An alternate name for OAH sulfhydrylase is homocysteine synthase. This model is designated subfamily because it may or may not have both activities.
Probab=99.45 E-value=1.3e-12 Score=112.30 Aligned_cols=92 Identities=22% Similarity=0.198 Sum_probs=69.6
Q ss_pred ccccCCCChhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCC
Q psy6548 4 QFPVKSKQVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVR 82 (242)
Q Consensus 4 ~~~~~~~d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~ 82 (242)
+..+|.+|+++ +...++++++|++|+++|++|.+.+ +++|+++|++||+++|+|++|... . ........
T Consensus 124 v~~v~~~d~~~l~~~l~~~t~~V~le~p~NPtg~v~d----l~~I~~la~~~~i~livD~t~~~~-~-----~~~~l~~g 193 (418)
T TIGR01326 124 VRFVDPDDPEEFEKAIDENTKAVFAETIGNPAINVPD----IEAIAEVAHAHGVPLIVDNTFATP-Y-----LCRPIDHG 193 (418)
T ss_pred EEEECCCCHHHHHHhcCcCCeEEEEECCCCCCCeecC----HHHHHHHHHHcCCEEEEECCCchh-h-----cCCchhcC
Confidence 44567778888 5555668899999999999997665 899999999999999999998521 1 11112234
Q ss_pred CCEEE--eeccccC-CccchheeEeCh
Q psy6548 83 PDIVI--LGKALSG-GLYPISAVLADD 106 (242)
Q Consensus 83 ~~~~~--~sK~~~~-g~~~~g~~~~~~ 106 (242)
.|+++ ++|++++ | .++|+++.++
T Consensus 194 ~Divv~S~sK~l~g~G-~~lGg~v~~~ 219 (418)
T TIGR01326 194 ADIVVHSATKYIGGHG-TAIGGVIVDG 219 (418)
T ss_pred CeEEEECccccccCCc-cceEEEEEec
Confidence 67776 7899994 8 8999988754
No 306
>PRK07050 cystathionine beta-lyase; Provisional
Probab=99.45 E-value=2e-12 Score=110.19 Aligned_cols=214 Identities=15% Similarity=0.085 Sum_probs=126.8
Q ss_pred cCCCChhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCE
Q psy6548 7 VKSKQVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDI 85 (242)
Q Consensus 7 ~~~~d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~ 85 (242)
++-.+.++ +...++++++|++|.+.|++|... .+++|+++|++||+++|+|++|.. +.. ........|+
T Consensus 135 vd~~~~~~l~~~i~~~tklV~le~p~Np~~~~~----di~~I~~ia~~~gi~livD~a~a~----~~~--~~~l~~GaDi 204 (394)
T PRK07050 135 YDPLIGAGIADLIQPNTRLIWLEAPGSVTMEVP----DVPAITAAARARGVVTAIDNTYSA----GLA--FKPFEHGVDI 204 (394)
T ss_pred ECCCCHHHHHHhcCCCCeEEEEECCCCCCccHh----hHHHHHHHHHHcCCEEEEECCccc----ccc--cCHHHcCCeE
Confidence 33334454 555567899999999999887444 499999999999999999999952 111 1111223466
Q ss_pred EE--eeccccCCc-cchheeEe-ChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhh
Q psy6548 86 VI--LGKALSGGL-YPISAVLA-DDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELRSR 161 (242)
Q Consensus 86 ~~--~sK~~~~g~-~~~g~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l~~~ 161 (242)
++ ++|.++|+. .+.|+++. ++++++.++........+.++.....++..++.+. ...++..+++..+.+.| +.
T Consensus 205 ~v~S~tK~~~g~~~~~gG~v~~~~~~~~~~~~~~~~~~G~~~~~~~a~l~lr~l~tl~--~Rl~~~~~~a~~la~~L-~~ 281 (394)
T PRK07050 205 SVQALTKYQSGGSDVLMGATITADAELHAKLKLARMRLGIGVSADDCSLVLRGLPSLQ--VRLAAHDRSALEVAEWL-KA 281 (394)
T ss_pred EEEECCceecCCCCeeEEEEEECCHHHHHHHHHHHHhcCCCCCHHHHHHHHcCCCcHH--HHHHHHHHHHHHHHHHH-Hh
Confidence 65 789998540 34676665 57777766543221122344444333322222222 13455556666777777 44
Q ss_pred cCC-------CCCC---------eEeeeceeEEEEecCC--chhHHHHHHHHHHCCceeccC------------------
Q psy6548 162 LSP-------DIVP---------VVRGKGLLNAIVLDKS--ILEVYDVCIKMKDAGLVTKPI------------------ 205 (242)
Q Consensus 162 l~~-------~~~~---------~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~gi~~~~~------------------ 205 (242)
.+. .... ...+.|.++.|.+... ..+..+|.+.|...++.++-+
T Consensus 282 ~p~v~~v~~p~l~~~p~~~~~~~~~~~~g~~~s~~l~~~~~~~~~~~~~~~l~~~~~~~s~G~~~sl~~~~~~~~~~~~~ 361 (394)
T PRK07050 282 RPEIATVLHPALPDCPGHAFWMRDFTGAGGLFSVVFDERYSPAQVDAFVEALELFAIGWSWGGACSLAMPYDVASMRTAK 361 (394)
T ss_pred CCCccEEECCCCCCCccHHHHHHhCCCCceEEEEEECCCCCHHHHHHHHHcCCCCeeccccCCccceEeeCcccccchhh
Confidence 332 1110 1123466778888652 256777888887666544322
Q ss_pred ---CCCEEEEeccCcCCHHHHHHHHHHHHHHHHHH
Q psy6548 206 ---SNNIIRLSPALNITEQELREGLDIIINTINTM 237 (242)
Q Consensus 206 ---~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~ 237 (242)
.++.+|+++ ..|+.+.+++.|++++...
T Consensus 362 ~~~~~~~iR~sv----GlE~~~dl~~dl~~al~~~ 392 (394)
T PRK07050 362 WPHRGTLVRLYI----GLEDEADLIADLEQALEAA 392 (394)
T ss_pred cCCCCCEEEEEe----CcCCHHHHHHHHHHHHHHh
Confidence 125799994 4456677777777776653
No 307
>PRK11706 TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisional
Probab=99.44 E-value=2.2e-11 Score=103.42 Aligned_cols=207 Identities=17% Similarity=0.209 Sum_probs=126.4
Q ss_pred Chhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCc-cCcccccccCCCCCCEEEe
Q psy6548 11 QVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGR-TGKLLAIHYEDVRPDIVIL 88 (242)
Q Consensus 11 d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~-~g~~~~~~~~~~~~~~~~~ 88 (242)
|+++ +...+.++++|++.+ ++|...+ +++|.++|++||+++|+|++|+-... .+.. .+-..|+.+|
T Consensus 108 d~~~le~~i~~~tk~i~~~~---~~G~~~~----~~~i~~la~~~~i~vIeD~a~a~g~~~~~~~-----~g~~~~~~~~ 175 (375)
T PRK11706 108 DETLIEAAITPKTRAIVPVH---YAGVACE----MDTIMALAKKHNLFVVEDAAQGVMSTYKGRA-----LGTIGHIGCF 175 (375)
T ss_pred CHHHHHHhcCCCCeEEEEeC---CCCCccC----HHHHHHHHHHcCCEEEEECccccccccCCee-----eecCcCEEEE
Confidence 4555 444455788887643 4665443 89999999999999999999963221 1211 1223477777
Q ss_pred e----ccccCCccchheeEeChhhhhccCCCC---------------------CCCCCCCCHHHHHHHHHHHHHHHhccH
Q psy6548 89 G----KALSGGLYPISAVLADDEVMGTLVPGT---------------------HGSTYGGNPLACKLAMTALDVILEENM 143 (242)
Q Consensus 89 s----K~~~~g~~~~g~~~~~~~~~~~l~~~~---------------------~~~~~~~~~~~~~~a~a~l~~~~~~~~ 143 (242)
| |.+++| .+.+++..++++.++++... .++++..+.+..+.+.+.++.+ +..
T Consensus 176 Sf~~~K~l~~g-~gG~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~~~ql~~l--~~~ 252 (375)
T PRK11706 176 SFHETKNYTAG-EGGALLINDPALIERAEIIREKGTNRSQFFRGQVDKYTWVDIGSSYLPSELQAAYLWAQLEAA--DRI 252 (375)
T ss_pred eCCCCcccccc-CCeEEEECCHHHHHHHHHHHHcCCCcchhhccCCCcceeeecccccCcCHHHHHHHHHHHHHH--HHH
Confidence 7 999866 66667776777776443211 1122222334444444444433 345
Q ss_pred HHHHHHHHHHHHHHHHhhcCC-C-C--CCeE---eeeceeEEEEecCCchhHHHHHHHHHHCCceeccC-----------
Q psy6548 144 IENAYKMGEIFRSELRSRLSP-D-I--VPVV---RGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPI----------- 205 (242)
Q Consensus 144 ~~~~~~~~~~l~~~l~~~l~~-~-~--~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~----------- 205 (242)
.++.+++.+.+++.| +.++. + . .... .....++++.++.. .+..++.+.|.++||.++..
T Consensus 253 ~~~R~~~~~~~~~~L-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~r~~l~~~L~~~gI~~~~~~~p~~~~~~~~ 330 (375)
T PRK11706 253 NQRRLALWQRYYDAL-APLAEAGRIELPSIPDDCKHNAHMFYIKLRDL-EDRSALINFLKEAGIMAVFHYIPLHSSPAGE 330 (375)
T ss_pred HHHHHHHHHHHHHHh-cCCCcCCeeecCCCCCCCceeeEEEEEEECCc-CCHHHHHHHHHHCCCCccccCCccCcchhhH
Confidence 566777778888888 65541 1 1 1111 12344556666554 46889999999999986411
Q ss_pred ---------------CCCEEEEeccCcCCHHHHHHHHHHHHHHH
Q psy6548 206 ---------------SNNIIRLSPALNITEQELREGLDIIINTI 234 (242)
Q Consensus 206 ---------------~~~~lR~~~~~~~t~e~i~~~~~~l~~~l 234 (242)
....+.+=++...+++|++..++.|++.+
T Consensus 331 ~~~~~~~~~p~a~~~~~~~l~lP~~~~l~~~~~~~i~~~i~~~~ 374 (375)
T PRK11706 331 RFGRFHGEDRYTTKESERLLRLPLFYNLTDVEQRTVIDTILEFF 374 (375)
T ss_pred hcCCCCCCChHHHHHHhCcEeccCCCCCCHHHHHHHHHHHHHHh
Confidence 11234444455678999999999988754
No 308
>PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=99.43 E-value=3.1e-12 Score=110.09 Aligned_cols=217 Identities=16% Similarity=0.192 Sum_probs=128.6
Q ss_pred ccccCCCChhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCC
Q psy6548 4 QFPVKSKQVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVR 82 (242)
Q Consensus 4 ~~~~~~~d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~ 82 (242)
+..+|..|+++ +...++++++|+++.+.|++|.+.+ +++|.++|++||+++|+|+++.. +.. .......
T Consensus 131 v~~vd~~d~e~l~~ai~~~tklV~l~sp~NPtG~v~d----i~~I~~la~~~gi~vIvD~t~a~----~~~--~~pl~~g 200 (431)
T PRK08248 131 VKFVDPSDPENFEAAITDKTKALFAETIGNPKGDVLD----IEAVAAIAHEHGIPLIVDNTFAS----PYL--LRPIEHG 200 (431)
T ss_pred EEEECCCCHHHHHHhcCCCCeEEEEECCCCCCCcccC----HHHHHHHHHHcCCEEEEeCCCCc----ccc--CChhHcC
Confidence 45567778888 5555568999999999999997776 88999999999999999999851 111 1111235
Q ss_pred CCEEE--eeccccC-CccchheeEe-Chhhh-h---c---cCC--------------------------CCCCCCCCCCH
Q psy6548 83 PDIVI--LGKALSG-GLYPISAVLA-DDEVM-G---T---LVP--------------------------GTHGSTYGGNP 125 (242)
Q Consensus 83 ~~~~~--~sK~~~~-g~~~~g~~~~-~~~~~-~---~---l~~--------------------------~~~~~~~~~~~ 125 (242)
.|+++ ++|.++| | .++|+++. +.+.. . . +.. .........+|
T Consensus 201 aDivv~S~tK~lgg~g-~~~Gg~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~p 279 (431)
T PRK08248 201 ADIVVHSATKFIGGHG-TSIGGVIVDSGKFDWKGSGKFPGLTEPDPSYHGLVYTDAVGEAAYITKARVQLLRDLGAALSP 279 (431)
T ss_pred CCEEEEcCccccCCCC-CceEEEEEeCCccccccccccccccCCccccccchhhhhhchhhHHHHHHHHHHHhcCCCCCH
Confidence 67776 6699994 5 56777655 32210 0 0 000 00000012233
Q ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhhcCCC-------CCC---------eE-eeeceeEEEEecCCchhH
Q psy6548 126 LACKLAMTALDVILEENMIENAYKMGEIFRSELRSRLSPD-------IVP---------VV-RGKGLLNAIVLDKSILEV 188 (242)
Q Consensus 126 ~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~-------~~~---------~~-~~~~~~~~~~~~~~~~~~ 188 (242)
..+......++.+ +...++..+++..+.+.| +..+.. ... .. .+.|.++.|++......+
T Consensus 280 ~~a~l~~rgl~tl--~~R~~~~~~nA~~la~~L-~~~p~v~~V~yPgl~s~p~~~~~~~~~~~g~gg~~sf~l~~~~~~~ 356 (431)
T PRK08248 280 FNSFLLLQGLETL--HLRMERHSENALAVAKFL-EEHEAVEWVSYPGLPSHPSYELAKKYLPKGQGAILTFGIKGGVEAG 356 (431)
T ss_pred HHHHHHhcCcCcH--HHHHHHHHHHHHHHHHHH-HhCCCcceEECCCCCCCccHHHHHHhCcCCCceEEEEEecCCHHHH
Confidence 3332222223322 224566777888899999 655431 111 01 245778899986542445
Q ss_pred HHHHHHHHHCCceec----------cC-----------------CCCEEEEeccCcCCHHHHHHHHHHHHHHHHHHh
Q psy6548 189 YDVCIKMKDAGLVTK----------PI-----------------SNNIIRLSPALNITEQELREGLDIIINTINTMA 238 (242)
Q Consensus 189 ~~~~~~l~~~gi~~~----------~~-----------------~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~~ 238 (242)
..|.+.|.--.+.++ |. .++.+|++ ...|+.+.+++-|+++++..+
T Consensus 357 ~~f~~~l~l~~~~~slG~~~sl~~~p~~~~h~~~~~~~~~~~gi~~~liRls----vGlEd~~dL~~Dl~~Al~~~~ 429 (431)
T PRK08248 357 KKLIDSVKLFSHLANVGDSKSLIIHPASTTHQQLSEEEQLAAGVTPGLVRLS----VGTEAIDDILDDLRQAIRQSQ 429 (431)
T ss_pred HHHHHhCCcceeccccCCCCeeeeCCCcCccccCCHHHHHhcCCCCCeEEEE----eccCCHHHHHHHHHHHHHhhh
Confidence 567666642221211 10 24689999 455677888888888887643
No 309
>PRK07671 cystathionine beta-lyase; Provisional
Probab=99.42 E-value=3.5e-12 Score=108.16 Aligned_cols=213 Identities=15% Similarity=0.114 Sum_probs=126.2
Q ss_pred ccccCCCChhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCC
Q psy6548 4 QFPVKSKQVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVR 82 (242)
Q Consensus 4 ~~~~~~~d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~ 82 (242)
+..++..|+++ +...++++++|++|.++|++|...+ +++|.++|+++|+++|+|++|... ....+ ....
T Consensus 116 v~~v~~~d~~~l~~ai~~~tklV~le~P~NPtg~~~d----l~~I~~la~~~g~~lvvD~a~~~~-~~~~p-----~~~g 185 (377)
T PRK07671 116 HTFVDTSNLEEVEEAIRPNTKAIYVETPTNPLLKITD----IKKISTIAKEKGLLTIVDNTFMTP-YWQSP-----ISLG 185 (377)
T ss_pred EEEECCCCHHHHHHhcCCCCeEEEEECCCCCCCcccC----HHHHHHHHHHcCCEEEEECCCCcc-ccCCh-----hhhC
Confidence 34556667777 5555668999999999999996654 999999999999999999998531 11111 1234
Q ss_pred CCEEE--eeccccCCc-cchheeEe-ChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Q psy6548 83 PDIVI--LGKALSGGL-YPISAVLA-DDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSEL 158 (242)
Q Consensus 83 ~~~~~--~sK~~~~g~-~~~g~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l 158 (242)
.|+++ ++|+++|.- .-.|++++ ++++++.+...........++..+..++..++.+.. ..+..+++...+.+.|
T Consensus 186 ~Divv~S~sK~l~G~~~~~~G~~v~~~~~l~~~~~~~~~~~g~~~~~~~a~l~~~~l~tl~~--R~~~~~~na~~la~~L 263 (377)
T PRK07671 186 ADIVLHSATKYLGGHSDVVAGLVVVNSPELAEDLHFVQNSTGGILGPQDSWLLLRGLKTLGI--RMEEHETNSRAIAEFL 263 (377)
T ss_pred CeEEEecCcccccCCccceeEEEEeCcHHHHHHHHHHHHhhcCCCCHHHHHHHHcCcChHHH--HHHHHHHHHHHHHHHH
Confidence 46666 779998430 12454554 466766665322221223344444333333333322 3566667888888888
Q ss_pred HhhcCC-------CCCC---------eEeeeceeEEEEecCCchhHHHHHHHHHH--CCcee--------ccC-------
Q psy6548 159 RSRLSP-------DIVP---------VVRGKGLLNAIVLDKSILEVYDVCIKMKD--AGLVT--------KPI------- 205 (242)
Q Consensus 159 ~~~l~~-------~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~gi~~--------~~~------- 205 (242)
+..+. .... ...+.|.++.|++.+ ...+..|.+.|.= .+.-+ .|.
T Consensus 264 -~~~~~v~~v~~p~l~~~~~~~~~~~~~~g~g~~~s~~~~~-~~~~~~f~~~l~l~~~~~s~G~~~sl~~~~~~~~~~~~ 341 (377)
T PRK07671 264 -NNHPAVNKVYYPGLPSHPNHELAKEQANGFGGMISFDVGS-EETANKVLERLQYFTLAESLGAVESLISIPSQMTHASI 341 (377)
T ss_pred -HcCCCeeEEECCCCCCCccHHHHHhhCCCCCceEEEEeCC-HHHHHHHHHhCCcceEccCCCCCCeEeECCCccccccC
Confidence 54432 1101 112457788888843 2445566666641 11111 111
Q ss_pred ----------CCCEEEEeccCcCCHHHHHHHHHHHHHHH
Q psy6548 206 ----------SNNIIRLSPALNITEQELREGLDIIINTI 234 (242)
Q Consensus 206 ----------~~~~lR~~~~~~~t~e~i~~~~~~l~~~l 234 (242)
.++.+|++ ...|+.+.+++-|++++
T Consensus 342 ~~~~~~~~gi~~~liR~s----vGlE~~~dl~~dl~~al 376 (377)
T PRK07671 342 PADRRKELGITDGLIRIS----VGIEDGEDLIEDLAQAL 376 (377)
T ss_pred CHHHHHhcCCCCCeEEEE----eccCCHHHHHHHHHHHh
Confidence 24689999 34456777777777665
No 310
>PRK05967 cystathionine beta-lyase; Provisional
Probab=99.42 E-value=4.5e-12 Score=107.49 Aligned_cols=213 Identities=14% Similarity=0.051 Sum_probs=126.2
Q ss_pred cCCCChhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCE
Q psy6548 7 VKSKQVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDI 85 (242)
Q Consensus 7 ~~~~d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~ 85 (242)
++.++.+. +...++++++|++|.+.|+++.+.+ +++|+++|++||+++++|+++... ..+.......|+
T Consensus 134 vd~~~~e~l~~al~~~TklV~lesPsNP~l~v~d----l~~I~~la~~~g~~vvVD~t~a~p------~~~~pl~~GaDi 203 (395)
T PRK05967 134 YDPEIGAGIAKLMRPNTKVVHTEAPGSNTFEMQD----IPAIAEAAHRHGAIVMMDNTWATP------LYFRPLDFGVDI 203 (395)
T ss_pred eCCCCHHHHHHhcCcCceEEEEECCCCCCCcHHH----HHHHHHHHHHhCCEEEEECCccCc------eecChhHcCCCE
Confidence 44444455 5555668999999999998875554 999999999999999999998631 111222345677
Q ss_pred EE--eeccccC--CccchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhh
Q psy6548 86 VI--LGKALSG--GLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELRSR 161 (242)
Q Consensus 86 ~~--~sK~~~~--g~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l~~~ 161 (242)
++ .+|.++| . .-+|++..+++..+.+...........+|..+......++.+.- ..++..+++..+.+.| +.
T Consensus 204 vv~S~tKy~~Gh~d-~~~G~v~~~~~~~~~l~~~~~~~G~~~~p~da~l~~rgl~Tl~l--R~~~~~~na~~lA~~L-~~ 279 (395)
T PRK05967 204 SIHAATKYPSGHSD-ILLGTVSANEKCWPQLLEAHGTLGLCAGPDDTYQILRGLRTMGI--RLEHHRKSALEIARWL-EG 279 (395)
T ss_pred EEEecccccCCCCC-eeEEEEEcCHHHHHHHHHHHHHcCCCCCHHHHHHHHcCcccHHH--HHHHHHHHHHHHHHHH-Hh
Confidence 76 7799884 4 44666777776655554211111113445544433333443322 2455566777777888 54
Q ss_pred cCCC-------CCC---------eEeeeceeEEEEecCC----chhHHHHHHHHHHCCceecc-----------------
Q psy6548 162 LSPD-------IVP---------VVRGKGLLNAIVLDKS----ILEVYDVCIKMKDAGLVTKP----------------- 204 (242)
Q Consensus 162 l~~~-------~~~---------~~~~~~~~~~~~~~~~----~~~~~~~~~~l~~~gi~~~~----------------- 204 (242)
.+.. ... ...+.|.++.|++... ...+..|.+.|.--.+.++-
T Consensus 280 hp~v~~V~yPgl~s~p~~~~~~~~~~g~gg~~sf~l~~~~~~~~~~~~~f~~~l~l~~~~~slG~~~sLi~~~~~~~~~~ 359 (395)
T PRK05967 280 RPDVARVLHPALPSFPGHEIWKRDFSGASGIFSFVLAAGPEKGKAKAHAFLDALEIFGLGYSWGGYESLALHVKLGDRTV 359 (395)
T ss_pred CCCCcEEECCCCCCCccHHHHHHhCCCCceEEEEEEcCCCcccHHHHHHHHHhCCcceEccCCCCcceeeeeCCCChhHh
Confidence 4421 111 1124577889999642 13455666666421111111
Q ss_pred ----CCCCEEEEeccCcCCHHHHHHHHHHHHHHHHHH
Q psy6548 205 ----ISNNIIRLSPALNITEQELREGLDIIINTINTM 237 (242)
Q Consensus 205 ----~~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~ 237 (242)
..++.+|++ ...|+.+.+++-|+++++..
T Consensus 360 ~~~~~~~~liRlS----vGlEd~~dLi~Dl~~Al~~~ 392 (395)
T PRK05967 360 AKAPYAGPVIRLQ----IGLEDVPDLKADLERGFAAA 392 (395)
T ss_pred hhccCCCCeEEEE----eccCCHHHHHHHHHHHHHhh
Confidence 123579999 34456777777777777654
No 311
>PRK05939 hypothetical protein; Provisional
Probab=99.40 E-value=3.1e-12 Score=109.09 Aligned_cols=211 Identities=17% Similarity=0.235 Sum_probs=123.6
Q ss_pred ccccCCCChhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCC
Q psy6548 4 QFPVKSKQVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVR 82 (242)
Q Consensus 4 ~~~~~~~d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~ 82 (242)
+..+|..|+++ +...++++++|++|.++|++|.+.+ +++|+++|++||+++|+|++|.. +. .++.....
T Consensus 113 v~~v~~~d~e~l~~~l~~~tklV~vesp~NptG~v~d----l~~I~~la~~~gi~livD~t~a~----~~--~~~~~~~g 182 (397)
T PRK05939 113 VTMVDATDVQNVAAAIRPNTRMVFVETIANPGTQVAD----LAGIGALCRERGLLYVVDNTMTS----PW--LFRPKDVG 182 (397)
T ss_pred EEEECCCCHHHHHHhCCCCCeEEEEECCCCCCCCHHh----HHHHHHHHHHcCCEEEEECCccc----cc--ccCccccC
Confidence 44566677888 5555678999999999999997754 99999999999999999999841 11 11111224
Q ss_pred CCEEE--eeccccC-CccchheeEeChhhhhc----------------------cCCC---CCCCCCCCCHHHHHHHHHH
Q psy6548 83 PDIVI--LGKALSG-GLYPISAVLADDEVMGT----------------------LVPG---THGSTYGGNPLACKLAMTA 134 (242)
Q Consensus 83 ~~~~~--~sK~~~~-g~~~~g~~~~~~~~~~~----------------------l~~~---~~~~~~~~~~~~~~~a~a~ 134 (242)
.|+++ ++|.++| | ..+|+++..+..... ++.. ..+. ..+|..+......
T Consensus 183 aDivv~S~sK~~~g~g-~~igg~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~--~~~p~~a~l~~rg 259 (397)
T PRK05939 183 ASLVINSLSKYIAGHG-NALGGAVTDTGLFDWSAYPNIFPAYRKGDPQQWGLTQIRKKGLRDMGA--TLSSEAAHRIAIG 259 (397)
T ss_pred CEEEEecCeecccCCC-CeEEEEEecCcccccccccchhhhhhccchhhHHHHHHHHHHHHhcCC--CCCHHHHHHHHcC
Confidence 56665 7899995 6 777877654221100 0000 0111 1233332222222
Q ss_pred HHHHHhccHHHHHHHHHHHHHHHHHhhcCCC-------CCC---------eEeeeceeEEEEecCCchhHHHHHHHHHH-
Q psy6548 135 LDVILEENMIENAYKMGEIFRSELRSRLSPD-------IVP---------VVRGKGLLNAIVLDKSILEVYDVCIKMKD- 197 (242)
Q Consensus 135 l~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~-------~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~- 197 (242)
++.+. -..++..+++..+.+.| +..+.. ... ...+.|.++.|++.+. .....|.+.|.-
T Consensus 260 l~tl~--~R~~~~~~na~~la~~L-~~~p~V~~V~yP~l~~~p~~~~~~~~~~g~g~l~sf~~~~~-~~~~~f~~~l~l~ 335 (397)
T PRK05939 260 AETLA--LRVDRSCSNALALAQFL-EAHPKVARVYYPGLASHPQHARATELFRHYGGLLSFELADG-IDCFDFLNRLKLV 335 (397)
T ss_pred cCcHH--HHHHHHHHHHHHHHHHH-HhCCCccEEECCCCCCCchHHHHHHhccCCceEEEEEeCCH-HHHHHHHHhCCcc
Confidence 33222 12344555777888888 554421 111 1135578889998754 445566665532
Q ss_pred -CCcee--------ccC-----------------CCCEEEEeccCcCCHHHHHHHHHHHHHHHH
Q psy6548 198 -AGLVT--------KPI-----------------SNNIIRLSPALNITEQELREGLDIIINTIN 235 (242)
Q Consensus 198 -~gi~~--------~~~-----------------~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~ 235 (242)
.+.-+ .|. .++.+|++ ...|+.+.+++.|+++++
T Consensus 336 ~~~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~lvR~s----vGlEd~~dLi~dl~~Al~ 395 (397)
T PRK05939 336 IKATHLGDTRTLVIPVAPTIYYEMGAERRASMGIADSLIRVS----VGIEDEADLIADFEQALD 395 (397)
T ss_pred eEccCCCCCCeeeecCcccccccCCHHHHHhcCCCCCeEEEE----eCCCCHHHHHHHHHHHHh
Confidence 11111 110 24689999 344577778887777775
No 312
>PRK06176 cystathionine gamma-synthase/cystathionine beta-lyase; Validated
Probab=99.39 E-value=7.6e-12 Score=106.20 Aligned_cols=213 Identities=15% Similarity=0.099 Sum_probs=122.4
Q ss_pred ccCCCChhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCC
Q psy6548 6 PVKSKQVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPD 84 (242)
Q Consensus 6 ~~~~~d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~ 84 (242)
.++-.|++. +...++++++|++|.++|++|.+.+ +++|.++|++||+++|+|++|+.. ....+ .+...|
T Consensus 118 ~vd~~d~e~l~~ai~~~t~lV~lesP~Nptg~~~d----i~~I~~la~~~gi~vivD~t~a~~-~~~~p-----~~~gaD 187 (380)
T PRK06176 118 IIDTSDLSQIKKAIKPNTKALYLETPSNPLLKITD----LAQCASVAKDHGLLTIVDNTFATP-YYQNP-----LLLGAD 187 (380)
T ss_pred EcCCCCHHHHHHhcCcCceEEEEECCCCCCceecC----HHHHHHHHHHcCCEEEEECCcccc-ccCCc-----cccCCC
Confidence 455567777 5555668999999999999997665 899999999999999999999632 11111 133567
Q ss_pred EEE--eeccccCCc-cchheeEeC-hhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHh
Q psy6548 85 IVI--LGKALSGGL-YPISAVLAD-DEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELRS 160 (242)
Q Consensus 85 ~~~--~sK~~~~g~-~~~g~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l~~ 160 (242)
+++ ++|.++|.- .-.|+++++ +++.+++...........++.........++.+. -..++..++...+.+.| +
T Consensus 188 ivv~S~tK~l~g~~d~~gG~vv~~~~~~~~~~~~~~~~~G~~~~~~~~~l~~~gl~tl~--~R~~~~~~~a~~la~~L-~ 264 (380)
T PRK06176 188 IVVHSGTKYLGGHSDVVAGLVTTNNEALAQEIAFFQNAIGGVLGPQDSWLLQRGIKTLG--LRMEAHQKNALCVAEFL-E 264 (380)
T ss_pred EEEecCceeccCCccceeeEEEecHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccCcHH--HHHHHHHHHHHHHHHHH-H
Confidence 777 559998420 124556654 5555555432111111123333222222232221 12344445566666666 4
Q ss_pred hcCC-------CCCC---------eEeeeceeEEEEecCCchhHHHHHHHHHHCCceec----------cC---------
Q psy6548 161 RLSP-------DIVP---------VVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTK----------PI--------- 205 (242)
Q Consensus 161 ~l~~-------~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~----------~~--------- 205 (242)
..+. .... ...+.|.++.|++... ..+..|.+.|.--.+.++ |.
T Consensus 265 ~~p~v~~v~~p~l~~~~~~~~~~~~~~g~g~~~s~~~~~~-~~~~~f~~~l~~~~~~~s~G~~~sl~~~p~~~~~~~~~~ 343 (380)
T PRK06176 265 KHPKVEKVYYPGLPTHPNHELAKKQMRGFSGMLSFTLKND-SEAVAFVESLKLFILGESLGGVESLVGIPAFMTHACIPK 343 (380)
T ss_pred hCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEECCH-HHHHHHHHcCCcceEccCCCCCCceeeCCcccccccCCH
Confidence 3321 1111 1224577889998753 455566665532111111 11
Q ss_pred --------CCCEEEEeccCcCCHHHHHHHHHHHHHHHHH
Q psy6548 206 --------SNNIIRLSPALNITEQELREGLDIIINTINT 236 (242)
Q Consensus 206 --------~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~ 236 (242)
..+.+|++ ...|+.+.+++-|+++++.
T Consensus 344 ~~~~~~gi~~~liR~s----vGlE~~~dli~dl~~Al~~ 378 (380)
T PRK06176 344 EQREAAGIRDGLVRLS----VGIEHEQDLLEDLEQAFAK 378 (380)
T ss_pred HHHHhcCCCcCeEEEE----eccCCHHHHHHHHHHHHhh
Confidence 24689999 4556778888888877764
No 313
>PRK07812 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=99.38 E-value=1.2e-11 Score=106.34 Aligned_cols=212 Identities=17% Similarity=0.182 Sum_probs=123.4
Q ss_pred CCChhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEE
Q psy6548 9 SKQVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVI 87 (242)
Q Consensus 9 ~~d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~ 87 (242)
.+|++. +...++++++|++|.+.|++|.+.+ +++|+++|++||+++|+|+++.. +.. ........|+++
T Consensus 142 ~~d~e~l~~ai~~~tklV~ie~~sNp~G~v~D----l~~I~~la~~~gi~liVD~t~a~----~~~--~~pl~~GaDivv 211 (436)
T PRK07812 142 PDDLDAWRAAVRPNTKAFFAETISNPQIDVLD----IPGVAEVAHEAGVPLIVDNTIAT----PYL--IRPLEHGADIVV 211 (436)
T ss_pred CCCHHHHHHhCCCCCeEEEEECCCCCCCeecC----HHHHHHHHHHcCCEEEEECCCcc----ccc--CCchhcCCCEEE
Confidence 356666 5555678999999999999998887 99999999999999999999851 111 111223567766
Q ss_pred --eeccccC-CccchheeEe-Chhhh--hc----------------------------cCC-CCCCCCCCCCHHHHHHHH
Q psy6548 88 --LGKALSG-GLYPISAVLA-DDEVM--GT----------------------------LVP-GTHGSTYGGNPLACKLAM 132 (242)
Q Consensus 88 --~sK~~~~-g~~~~g~~~~-~~~~~--~~----------------------------l~~-~~~~~~~~~~~~~~~~a~ 132 (242)
++|.++| | -.+|.++. +.... .. .+. .........+|..+...+
T Consensus 212 ~S~tK~lgg~G-~~i~G~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~p~~a~l~~ 290 (436)
T PRK07812 212 HSATKYLGGHG-TAIAGVIVDGGTFDWTQGRFPGFTTPDPSYHGVVFAELGPPAYALKARVQLLRDLGSAISPFNAFLIA 290 (436)
T ss_pred EecccccCCCC-CeEEEEEEcCCccccccccccccccCCcccccchhhhcchhHHHHHHHHHHHHhcCCCCCHHHHHHHh
Confidence 6699983 2 12444333 22110 00 000 000001123333333222
Q ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHhhcCCC-------CCC---------eE-eeeceeEEEEecCCchhHHHHHHHH
Q psy6548 133 TALDVILEENMIENAYKMGEIFRSELRSRLSPD-------IVP---------VV-RGKGLLNAIVLDKSILEVYDVCIKM 195 (242)
Q Consensus 133 a~l~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~-------~~~---------~~-~~~~~~~~~~~~~~~~~~~~~~~~l 195 (242)
..++.+ +...++..+++..+.+.| +..+.. ... .. .+.|.++.|++..+...+..|.+.|
T Consensus 291 rgl~tL--~~R~~~~~~nA~~la~~L-~~~p~v~~V~yPgl~s~p~~~~~~~~~~~g~gg~~sf~l~~~~~~~~~f~~~l 367 (436)
T PRK07812 291 QGLETL--SLRIERHVANAQRVAEFL-EARDEVASVNYAGLPSSPWYERAKRLAPKGTGAVLSFELAGGVEAGKAFVNAL 367 (436)
T ss_pred cCcCcH--HHHHHHHHHHHHHHHHHH-HhCCCccEEECCCCCCCccHHHHHHhCcCCCceEEEEEecCCHHHHHHHHHhC
Confidence 223322 234567778888888888 655421 111 01 3457788999865424466777776
Q ss_pred HHCCceec----------cC-----------------CCCEEEEeccCcCCHHHHHHHHHHHHHHHHHHh
Q psy6548 196 KDAGLVTK----------PI-----------------SNNIIRLSPALNITEQELREGLDIIINTINTMA 238 (242)
Q Consensus 196 ~~~gi~~~----------~~-----------------~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~~ 238 (242)
.--....+ |. ..+.+|++ ...|+.+.+++.|+++++..+
T Consensus 368 ~l~~~a~slG~~~sLi~~p~~~~h~~~~~~~~~~~gi~~~liRlS----vGlEd~~dli~dl~~Al~~~~ 433 (436)
T PRK07812 368 TLHSHVANIGDVRSLVIHPASTTHSQLTPEEQLATGVTPGLVRLA----VGIEGIDDILADLEAGFAAAK 433 (436)
T ss_pred CcceEecccCCCcceeeCCCCCCcccCCHHHHHhcCCCCCeEEEE----eccCCHHHHHHHHHHHHHhhh
Confidence 43222221 10 24689999 455677888888888887654
No 314
>PRK05994 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=99.37 E-value=2.3e-11 Score=104.79 Aligned_cols=214 Identities=14% Similarity=0.180 Sum_probs=124.1
Q ss_pred cccCCCChhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCC
Q psy6548 5 FPVKSKQVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRP 83 (242)
Q Consensus 5 ~~~~~~d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~ 83 (242)
..++-+|+++ +...++++++|++|+++|++|.+++ +++|+++|++||+++|+|++|+. + .........+
T Consensus 131 ~~vd~~d~~~l~~ai~~~tklV~vesp~NptG~v~d----l~~I~~la~~~gi~livD~a~a~----~--~~~~pl~~ga 200 (427)
T PRK05994 131 RWADADDPASFERAITPRTKAIFIESIANPGGTVTD----IAAIAEVAHRAGLPLIVDNTLAS----P--YLIRPIEHGA 200 (427)
T ss_pred EEECCCCHHHHHHhcCcCCeEEEEECCCCCCCeecC----HHHHHHHHHHcCCEEEEECCccc----c--ccCCccccCC
Confidence 3455567777 5555668999999999999997776 89999999999999999999952 1 1112224567
Q ss_pred CEEE--eeccccCCccchheeEe-Chh-----------------------hhhccC-------C---CCCCCCCCCCHHH
Q psy6548 84 DIVI--LGKALSGGLYPISAVLA-DDE-----------------------VMGTLV-------P---GTHGSTYGGNPLA 127 (242)
Q Consensus 84 ~~~~--~sK~~~~g~~~~g~~~~-~~~-----------------------~~~~l~-------~---~~~~~~~~~~~~~ 127 (242)
|+++ ++|.++|.--.+|.++. ... +.+.+. . .........++..
T Consensus 201 Divv~S~tK~lgg~~~~~gG~v~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~ 280 (427)
T PRK05994 201 DIVVHSLTKFLGGHGNSMGGIIVDGGTFDWSKSGKYPMLSEPRPEYHGLVLHETFGNFAFAIAARVLGLRDLGPAISPFN 280 (427)
T ss_pred cEEEEcCccccCCCCCcEEEEEEeCCccccccccccccccCCcchhhhhhHHHHhhhhhhHHHHHHHHHHhcCCCCCHHH
Confidence 8777 67999842023443333 111 000000 0 0000111234444
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhhcCCC-------CCC---------e-EeeeceeEEEEecCCchhHHH
Q psy6548 128 CKLAMTALDVILEENMIENAYKMGEIFRSELRSRLSPD-------IVP---------V-VRGKGLLNAIVLDKSILEVYD 190 (242)
Q Consensus 128 ~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~-------~~~---------~-~~~~~~~~~~~~~~~~~~~~~ 190 (242)
+...+..++.+ +...++.++++..+.+.| +..+.. ... . ..+.|.++.|++.........
T Consensus 281 A~l~~~~l~tL--~~r~~~~~~~a~~la~~L-~~~p~v~~v~yP~l~~~~~~~~~~~~~~~g~g~~~sf~l~~~~~~~~~ 357 (427)
T PRK05994 281 AFLILTGIETL--PLRMQRHSDNALAVAEWL-KGHPKVSWVNYAGLPDDPYHALAQKYSPKGAGAVFTFGLKGGYEAGVK 357 (427)
T ss_pred HHHHHcCcccH--HHHHHHHHHHHHHHHHHH-HhCCCccEEECCCCCCCccHHHHHHhcCCCceEEEEEEecCCHHHHHH
Confidence 44433334333 334577778888888888 655531 101 0 134577888988643234556
Q ss_pred HHHHHHHCCceec----------cC-----------------CCCEEEEeccCcCCHHHHHHHHHHHHHHHH
Q psy6548 191 VCIKMKDAGLVTK----------PI-----------------SNNIIRLSPALNITEQELREGLDIIINTIN 235 (242)
Q Consensus 191 ~~~~l~~~gi~~~----------~~-----------------~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~ 235 (242)
|.+.|.--.+.++ |. ..+.+|++ ...|+.+.+++.|+++++
T Consensus 358 ~~~~l~l~~~~~s~G~~~sl~~~p~~~~h~~~~~~~~~~~gi~~~liRls----vGlE~~~dli~dl~~Al~ 425 (427)
T PRK05994 358 LVSSLKLFSHLANIGDTRSLVIHPASTTHRQLTDEQKVAAGAGPDVVRLS----IGIEDVDDIIADLEQALA 425 (427)
T ss_pred HHHhCCcceeccccCCCcceeeCCCCCCcccCCHHHHHhcCCCCCcEEEE----eccCCHHHHHHHHHHHHh
Confidence 6666542222211 10 14689999 344567777777777765
No 315
>PF12897 Aminotran_MocR: Alanine-glyoxylate amino-transferase; InterPro: IPR024551 This entry represents a family of putative aminotransferases.; PDB: 3D6K_C 3EZ1_A 3PPL_B.
Probab=99.37 E-value=2.6e-11 Score=99.43 Aligned_cols=217 Identities=15% Similarity=0.185 Sum_probs=126.7
Q ss_pred Chhh--hcC-CCCCEEEEEEcccccCCCcccCCHHHHHHHHHH-HHhhCCEEEEeccccc--cC-ccCccc------ccc
Q psy6548 11 QVPA--KLK-SNPNICAFMVEPIQGEAGAVVPDDGYLKKVRAL-CSQYNVLFIADEVQTG--LG-RTGKLL------AIH 77 (242)
Q Consensus 11 d~~~--~~~-~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l-~~~~~~~li~De~~~~--~~-~~g~~~------~~~ 77 (242)
|+|. +.. .++.++.|++-|.++|..++..+++..++++++ +.+.+..|+.|.+|.= +. .....- ...
T Consensus 159 DmD~Ve~LV~~D~svKGiWcVP~ySNPtG~tySde~vrrlA~m~~AA~DFRI~WDNAY~vHhL~~~~~~~~~~nil~~~~ 238 (425)
T PF12897_consen 159 DMDMVEELVAEDPSVKGIWCVPKYSNPTGITYSDEVVRRLAAMKTAAPDFRIFWDNAYAVHHLYDEEPRDALLNILDACA 238 (425)
T ss_dssp -HHHHHHHTHTSTTEEEEEE-SSS-TTT-----HHHHHHHHHS--SSTT-EEEEE-TTTT-BSSSSSS------HHHHHH
T ss_pred CHHHHHHHHhcCCccceEEeCCCccCCCCccCCHHHHHHHhcCCcCCcCeEEEeecCceEeeccccccchhhhHHHHHHH
Confidence 4555 333 478999999999877666688999999999999 4468999999999951 21 111100 001
Q ss_pred cCCCCCC----EEEeeccccCCccchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHh-c-cHHHHHHHHH
Q psy6548 78 YEDVRPD----IVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILE-E-NMIENAYKMG 151 (242)
Q Consensus 78 ~~~~~~~----~~~~sK~~~~g~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~-~-~~~~~~~~~~ 151 (242)
..| .|| +.+.||.--+| .+++++.++++-++.+.......+.+.+-+.|..- .+.+.+ + ++.+++++.+
T Consensus 239 ~AG-npdrv~~F~STSKITf~G-aGva~~aaS~~Nl~~~~~~~~~~tIgpdKvNQLRH---vrff~d~~gGv~aHM~kHa 313 (425)
T PF12897_consen 239 KAG-NPDRVYVFASTSKITFPG-AGVAFFAASEANLAWIKKHLSVQTIGPDKVNQLRH---VRFFKDAEGGVRAHMRKHA 313 (425)
T ss_dssp HTT--TTSEEEEEESTTTS-TT-SS-EEEEE-HHHHHHHHHHHHHH-S---HHHHHHH---HHHHHSHHTHHHHHHHHHH
T ss_pred HcC-CCCeEEEEecccccccCC-cceeeeecCHHHHHHHHHHhcCceeCccHHHHHHH---HHHhcChhhHHHHHHHHHH
Confidence 112 344 33367966555 67999999988777777644444555555665432 234443 4 6777777766
Q ss_pred HHHH-------HHHHhhcC-C-C-CCCeEeeeceeEEEEecCCchhHHHHHHHHHHCCceeccCC----------CCEEE
Q psy6548 152 EIFR-------SELRSRLS-P-D-IVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPIS----------NNIIR 211 (242)
Q Consensus 152 ~~l~-------~~l~~~l~-~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~----------~~~lR 211 (242)
..++ +.|.++|+ . . ..+..+..|+|++++..+. .+..+++.+.+.||.+++.| ...||
T Consensus 314 ~il~PKF~~V~~~L~~~L~~~~~ia~Wt~P~GGYFIsld~~~G--~AkrvV~lakeAGV~LT~AGAtfPyg~DP~D~nIR 391 (425)
T PF12897_consen 314 AILRPKFEAVLEILEEELGDGLGIASWTKPKGGYFISLDVLDG--TAKRVVELAKEAGVALTPAGATFPYGKDPRDSNIR 391 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHGTGGTSEEE---SBSS-EEEEESTT---HHHHHHHHHHTTEE---TTTTSGGG--TTS-EEE
T ss_pred HHHhhhHHHHHHHHHHhcCCCCCeeEecCCCCceEEEEecCCC--hHHHHHHHHHHhCceeCCCCCCCCCCCCCCCCcEE
Confidence 6555 44545555 2 2 2344566789999999885 89999999999999998752 45799
Q ss_pred EeccCcCCHHHHHHHHHHHHHHHH
Q psy6548 212 LSPALNITEQELREGLDIIINTIN 235 (242)
Q Consensus 212 ~~~~~~~t~e~i~~~~~~l~~~l~ 235 (242)
++|++. +.||++.+++.+.-+.+
T Consensus 392 iAPS~P-~leel~~Am~~~~~cv~ 414 (425)
T PF12897_consen 392 IAPSYP-SLEELETAMDVFATCVK 414 (425)
T ss_dssp E--SSS--HHHHHHHHHHHHHHHH
T ss_pred ecCCCC-CHHHHHHHHHHHHHHHH
Confidence 999987 89999999999876544
No 316
>PRK08114 cystathionine beta-lyase; Provisional
Probab=99.37 E-value=1.5e-11 Score=104.29 Aligned_cols=217 Identities=14% Similarity=0.051 Sum_probs=132.3
Q ss_pred ccccCCCChhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhC--CEEEEeccccccCccCcccccccCC
Q psy6548 4 QFPVKSKQVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYN--VLFIADEVQTGLGRTGKLLAIHYED 80 (242)
Q Consensus 4 ~~~~~~~d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~--~~li~De~~~~~~~~g~~~~~~~~~ 80 (242)
+..++..|.+. +...++++++|++|.+.|++|.+.+ +++|+++|+++| +++++|.+++ .+. .++...
T Consensus 129 v~~vd~~d~~~l~~~l~~~TrlV~~EtpsNp~~~v~D----I~~Ia~ia~~~g~g~~lvVDnT~a----~p~--~~~pl~ 198 (395)
T PRK08114 129 TTWFDPLIGADIAKLIQPNTKVVFLESPGSITMEVHD----VPAIVAAVRSVNPDAVIMIDNTWA----AGV--LFKALD 198 (395)
T ss_pred EEEECCCCHHHHHHhcCCCceEEEEECCCCCCCEeec----HHHHHHHHHHhCCCCEEEEECCCc----ccc--ccCHHH
Confidence 44566777777 5555668999999999999998887 999999999985 9999999985 221 123334
Q ss_pred CCCCEEE--eeccccCC-ccchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Q psy6548 81 VRPDIVI--LGKALSGG-LYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSE 157 (242)
Q Consensus 81 ~~~~~~~--~sK~~~~g-~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~ 157 (242)
+..|+++ .+|+++|. =..+|.++.+++.++.+...........+|..+......++.+.- ..++..+++..+.+.
T Consensus 199 ~GaDivv~S~tKyl~Ghsdv~~G~v~~~~~~~~~l~~~~~~~G~~~~p~~a~l~~rgl~TL~l--R~~~~~~na~~va~~ 276 (395)
T PRK08114 199 FGIDISIQAGTKYLVGHSDAMIGTAVANARCWEQLRENSYLMGQMVDADTAYMTSRGLRTLGV--RLRQHEESSLKVAEW 276 (395)
T ss_pred cCCcEEEEcCcccccCCCcceeEEEEcCHHHHHHHHHHHHhccCCCCHHHHHHHHcCCCcHHH--HHHHHHHHHHHHHHH
Confidence 5678888 55999953 034666666766655444211111113344444333333333321 346667778888888
Q ss_pred HHhhcCC-------CCCC---------eEeeeceeEEEEecCC--chhHHHHHHHHHHCCcee---------c---c---
Q psy6548 158 LRSRLSP-------DIVP---------VVRGKGLLNAIVLDKS--ILEVYDVCIKMKDAGLVT---------K---P--- 204 (242)
Q Consensus 158 l~~~l~~-------~~~~---------~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~gi~~---------~---~--- 204 (242)
| +..+. +... ...+.|.++.|++... ......|.+.|.--.+.+ . |
T Consensus 277 L-~~hp~V~~V~yPgl~~~p~~~~~~~~~~g~gg~~sf~l~~~~~~~~~~~f~~~l~l~~~a~SlGg~~SLi~~~~~~~~ 355 (395)
T PRK08114 277 L-AEHPEVARVNHPALPGCKGHEFWKRDFTGSSGLFSFVLKKKLTDEQLANYLDNFSLFSMAYSWGGFESLILANQPEEI 355 (395)
T ss_pred H-HcCCCEeEEECCCCCCCccHHHHHhhCCCCceEEEEEecCcccHHHHHHHHHhCCcceeecccCCccceeccCCchhh
Confidence 8 55442 1111 1124577889998642 134455655553211111 1 0
Q ss_pred ----------CCCCEEEEeccCcCCHHHHHHHHHHHHHHHHHH
Q psy6548 205 ----------ISNNIIRLSPALNITEQELREGLDIIINTINTM 237 (242)
Q Consensus 205 ----------~~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~ 237 (242)
..++.+|++ ...|+.+.+++-|+++++.+
T Consensus 356 ~~~~~~~~~~~~~~liRlS----vGlEd~~DLi~Dl~~Al~~~ 394 (395)
T PRK08114 356 AAIRPAGEVDFTGTLIRLH----IGLEDVDDLIADLAAGFARI 394 (395)
T ss_pred hccCChhHhcCCCCeEEEE----eccCCHHHHHHHHHHHHHhh
Confidence 123689999 34567788888888877653
No 317
>TIGR01788 Glu-decarb-GAD glutamate decarboxylase. This model represents the pyridoxal phosphate-dependent glutamate (alpha) decarboxylase found in bacteria (low and hi-GC gram positive, proteobacteria and cyanobacteria), plants, fungi and at least one archaon (Methanosarcina). The product of the enzyme is gamma-aminobutyrate (GABA).
Probab=99.36 E-value=1.3e-10 Score=99.82 Aligned_cols=218 Identities=12% Similarity=0.088 Sum_probs=139.2
Q ss_pred Chhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhh------CCEEEEeccccccCc---cCc-ccccccC
Q psy6548 11 QVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQY------NVLFIADEVQTGLGR---TGK-LLAIHYE 79 (242)
Q Consensus 11 d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~------~~~li~De~~~~~~~---~g~-~~~~~~~ 79 (242)
|+++ +...+.++.+|++.-+++.+|.+-| +++|+++|++| |+++.+|.+|.|+.. .++ .+.+.
T Consensus 175 d~~~L~~~i~~~t~lV~~t~g~t~tG~idp----i~~I~~i~~~~~~~~~~~~~~HvDaaq~g~~~p~~~~~~~~~~~-- 248 (431)
T TIGR01788 175 DPEQVVEAVDENTIGVVCILGTTYTGEYED----VKALNDALDEYNAKTGWDIPIHVDAASGGFIAPFVYPDLEWDFR-- 248 (431)
T ss_pred CHHHHHHHHhhCCeEEEEEeCCCCCcccCC----HHHHHHHHHHHHhhhCCCceEEEecccHHHHHHHhCCCchhhcC--
Confidence 4455 4444567889999999999998887 99999999999 999999999986311 111 11111
Q ss_pred CCCCCEEEee--ccccCCccchheeEeChh--hhhccCCC--CCC-----CCCCCCH--HHHHHHHHHHHHHHh---ccH
Q psy6548 80 DVRPDIVILG--KALSGGLYPISAVLADDE--VMGTLVPG--THG-----STYGGNP--LACKLAMTALDVILE---ENM 143 (242)
Q Consensus 80 ~~~~~~~~~s--K~~~~g~~~~g~~~~~~~--~~~~l~~~--~~~-----~~~~~~~--~~~~~a~a~l~~~~~---~~~ 143 (242)
....|.++++ |++.++ .++|+++..++ +...+... ..+ .+...+. ......+..++.+.. +++
T Consensus 249 ~~~~DSis~s~HK~~~~P-~g~G~l~~r~~~~l~~~~~~~~~yl~~~~~~~t~~~sR~g~~al~~w~~l~~lG~~G~~~i 327 (431)
T TIGR01788 249 LPRVKSINVSGHKYGLVY-PGVGWVIWRDEEALPEELIFHVNYLGGDEPTFTLNFSRPANQVIAQYYNFLRLGREGYRKI 327 (431)
T ss_pred CCCceEEEECchhccCCC-CCcEEEEEeChHHcchhheecccccCCCCCCcceecCchHHHHHHHHHHHHHhcHHHHHHH
Confidence 1245667755 987666 78898887643 22222110 111 1121121 122234444443333 345
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCCeEe-eeceeEEEEecCC---chhHHHHHHHHHHCCceec----cC---CCCEEEE
Q psy6548 144 IENAYKMGEIFRSELRSRLSPDIVPVVR-GKGLLNAIVLDKS---ILEVYDVCIKMKDAGLVTK----PI---SNNIIRL 212 (242)
Q Consensus 144 ~~~~~~~~~~l~~~l~~~l~~~~~~~~~-~~~~~~~~~~~~~---~~~~~~~~~~l~~~gi~~~----~~---~~~~lR~ 212 (242)
.++..++.+++.+.| ++.+. +....+ ....++.|.+... ..+..++.+.|.++|+.+. |. +..++|+
T Consensus 328 ~~~~~~la~~l~~~L-~~~~~-~el~~~~~~~~iV~Fr~~~~~~~~~~~~~l~~~L~~~G~~~~~~~~p~~~~~~~~lR~ 405 (431)
T TIGR01788 328 MQNSLDVARYLAEEI-AKLGP-FEIISDGSGIPLVAFKLKDDADPGYTLYDLSHRLRERGWIVPAYTLPKNAEDIVVMRI 405 (431)
T ss_pred HHHHHHHHHHHHHHH-HhCCC-EEEeeCCCCceEEEEEeCCCCCCCcCHHHHHHHHHHCCCcccCCCCCCccCCeEEEEE
Confidence 677778888898988 66553 111111 2345666777641 1467789999999998752 21 3457999
Q ss_pred eccCcCCHHHHHHHHHHHHHHHHHH
Q psy6548 213 SPALNITEQELREGLDIIINTINTM 237 (242)
Q Consensus 213 ~~~~~~t~e~i~~~~~~l~~~l~~~ 237 (242)
+.....+.+.++.+++.|++++..+
T Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (431)
T TIGR01788 406 VVREGFSRDLAELLIEDIEAALAYL 430 (431)
T ss_pred EecCCCCHHHHHHHHHHHHHHHHhh
Confidence 9777788999999999999988764
No 318
>TIGR03588 PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase. This family of enzymes are aminotransferases of the pfam01041 family involved in the biosynthesis of pseudaminic acid. They convert UDP-4-keto-6-deoxy-N-acetylglucosamine into UDP-4-amino-4,6-dideoxy-N-acetylgalactose. Pseudaminic acid has a role in surface polysaccharide in Pseudomonas as well as in the modification of flagellin in Campylobacter and Helicobacter species.
Probab=99.35 E-value=2.5e-10 Score=97.25 Aligned_cols=199 Identities=16% Similarity=0.160 Sum_probs=120.3
Q ss_pred CCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCC--CCCEEEee----cccc
Q psy6548 20 PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDV--RPDIVILG----KALS 93 (242)
Q Consensus 20 ~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~--~~~~~~~s----K~~~ 93 (242)
+++++|++.+ .+|...+ +++|.++|++||+++|+|++|+ +|.. +.....+. ..|+.++| |.++
T Consensus 120 ~~t~~v~~~~---~~G~~~~----~~~i~~l~~~~~~~lI~D~a~a-~g~~---~~~~~~g~~~~~d~~~~S~~~~K~~~ 188 (380)
T TIGR03588 120 KLPKAIVPVD---FAGKSVD----MQAIAALAKKHGLKIIEDASHA-LGAE---YGGKPVGNCRYADATVFSFHPVKIIT 188 (380)
T ss_pred CCceEEEEeC---CCCccCC----HHHHHHHHHHcCCEEEEECCCc-ccCc---cCCEeCCCccccceEEEecCCCCccc
Confidence 5788877533 3565443 8999999999999999999996 2211 11011233 34777755 8887
Q ss_pred CCccchheeEe-ChhhhhccCCCC-------------------------CCCCCCCCHHHHHHHHHHHHHHHhccHHHHH
Q psy6548 94 GGLYPISAVLA-DDEVMGTLVPGT-------------------------HGSTYGGNPLACKLAMTALDVILEENMIENA 147 (242)
Q Consensus 94 ~g~~~~g~~~~-~~~~~~~l~~~~-------------------------~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~ 147 (242)
.| ..|+++. ++++.++++... .+..+..+.+..+.+++.|+.+ +.+.++.
T Consensus 189 ~~--~GG~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~n~~m~~l~aa~g~~qL~~l--~~~~~~r 264 (380)
T TIGR03588 189 TA--EGGAVTTNDEELAERMRLLRSHGITKDPLLFEKQDEGPWYYEQQELGFNYRMTDIQAALGLSQLKKL--DRFVAKR 264 (380)
T ss_pred cc--CceEEEECCHHHHHHHHHHHHCCCCCCcccccccccCcceeeeeccccccCccHHHHHHHHHHHHHH--HHHHHHH
Confidence 54 2444554 466665543210 1112233445444444444433 4467778
Q ss_pred HHHHHHHHHHHHhhcCCCCCCeE----eeeceeEEEEecC-CchhHHHHHHHHHHCCceeccC----C------------
Q psy6548 148 YKMGEIFRSELRSRLSPDIVPVV----RGKGLLNAIVLDK-SILEVYDVCIKMKDAGLVTKPI----S------------ 206 (242)
Q Consensus 148 ~~~~~~l~~~l~~~l~~~~~~~~----~~~~~~~~~~~~~-~~~~~~~~~~~l~~~gi~~~~~----~------------ 206 (242)
+++.+++++.| +.++....... ........+.+.. .+.+.+++.+.|.++||.++.. .
T Consensus 265 ~~~~~~~~~~L-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~r~~l~~~L~~~gI~~~~~~~~~~~~~~~~~~~~~~ 343 (380)
T TIGR03588 265 REIAARYDRLL-KDLPYFTPLTIPLGSKSAWHLYPILLDQEFGCTRKEVFEALRAAGIGVQVHYIPVHLQPYYRQGFGDG 343 (380)
T ss_pred HHHHHHHHHHh-cCCCCccCCCCCCCCEeEEEEEEEEECCcCCCCHHHHHHHHHHCCCCcccCCcccccChhhhccCCcC
Confidence 88888999999 66653111111 1111222333332 1146789999999999987521 0
Q ss_pred ---------CCEEEEeccCcCCHHHHHHHHHHHHHHH
Q psy6548 207 ---------NNIIRLSPALNITEQELREGLDIIINTI 234 (242)
Q Consensus 207 ---------~~~lR~~~~~~~t~e~i~~~~~~l~~~l 234 (242)
...+++-++...|++|+++.++.|++++
T Consensus 344 ~~p~a~~~~~~~l~lP~~~~l~~~dv~~i~~~l~~~~ 380 (380)
T TIGR03588 344 DLPSAENFYLAEISLPLHPALTLEQQQRVVETLRKVL 380 (380)
T ss_pred CCcHHHHHHhceEEcCCCCCCCHHHHHHHHHHHHHhC
Confidence 1457887788889999999999998763
No 319
>PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=99.35 E-value=3.1e-11 Score=103.51 Aligned_cols=214 Identities=14% Similarity=0.140 Sum_probs=128.9
Q ss_pred ccCCC-Chhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCC
Q psy6548 6 PVKSK-QVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRP 83 (242)
Q Consensus 6 ~~~~~-d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~ 83 (242)
.++++ |++. +...+++|++|++|.+.|+++.++. +++|+++|++||+++|+|+++. .+...+......
T Consensus 130 ~vd~~~d~~~l~~~I~~~Tk~I~~e~pgnP~~~v~D----i~~I~~iA~~~gi~livD~T~~------tP~~~~pl~~GA 199 (432)
T PRK06702 130 FFNPNLTADEIVALANDKTKLVYAESLGNPAMNVLN----FKEFSDAAKELEVPFIVDNTLA------TPYLCQAFEHGA 199 (432)
T ss_pred EECCCCCHHHHHHhCCcCCeEEEEEcCCCccccccC----HHHHHHHHHHcCCEEEEECCCC------chhhCChhhcCC
Confidence 44554 6677 6666778999999999999887765 9999999999999999999874 122333334566
Q ss_pred CEEE--eeccccCCccchh-eeEeCh----------hhhh---------------------ccC-CCCCCCCCCCCHHHH
Q psy6548 84 DIVI--LGKALSGGLYPIS-AVLADD----------EVMG---------------------TLV-PGTHGSTYGGNPLAC 128 (242)
Q Consensus 84 ~~~~--~sK~~~~g~~~~g-~~~~~~----------~~~~---------------------~l~-~~~~~~~~~~~~~~~ 128 (242)
|+++ ++|.++|....+| .++... ++.+ ... .....+....+++..
T Consensus 200 DIvv~S~TKy~~Ghsd~l~G~v~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~sp~~a 279 (432)
T PRK06702 200 NIIVHSTTKYIDGHASSLGGIVIDGGNFDWTNGKYPELVEPDPSYHGVSYVQNFGAAAYIVKARVQLLRDYGNCMSPFNA 279 (432)
T ss_pred CEEEEccccccCCCcceeceEEEeCCCcccccccccccccccccccccchhhccchhhHHHHHHHHHHHHccCCCCHHHH
Confidence 7777 7897773212222 222111 1110 000 001122335667766
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhhcCC-------CCCCe---------E-eeeceeEEEEecCCchhHHHH
Q psy6548 129 KLAMTALDVILEENMIENAYKMGEIFRSELRSRLSP-------DIVPV---------V-RGKGLLNAIVLDKSILEVYDV 191 (242)
Q Consensus 129 ~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l~~~l~~-------~~~~~---------~-~~~~~~~~~~~~~~~~~~~~~ 191 (242)
..++..|+.+. ...++.+++...+.+.| +..+. +.... . .+.|.++.|++......+..|
T Consensus 280 ~l~~rgL~Tl~--lR~~r~~~Na~~la~~L-~~~p~V~~V~yPgl~~~p~~~l~~~~~~~g~gg~~sf~l~~~~~~~~~f 356 (432)
T PRK06702 280 YISNIGLETLH--LRMERHSENALAVAKWL-ADHERIEWVNYPGLDSNENYSLAQKYLKKGASGVLTFGIKGGLEAAKEF 356 (432)
T ss_pred HHHHhccCcHH--HHHHHHHHHHHHHHHHH-HhCCCcceEECCCCCCCccHHHHHHhCcCCCceEEEEEecCCHHHHHHH
Confidence 66555555433 24566678888888999 65542 11110 0 245678889986432445566
Q ss_pred HHHHHHCCcee----------ccC-----------------CCCEEEEeccCcCCHHHHHHHHHHHHHHHHH
Q psy6548 192 CIKMKDAGLVT----------KPI-----------------SNNIIRLSPALNITEQELREGLDIIINTINT 236 (242)
Q Consensus 192 ~~~l~~~gi~~----------~~~-----------------~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~ 236 (242)
.+.|.--.+.+ .|. ..+.+|++ ...|+.+.+++-|+++++.
T Consensus 357 ~~~l~l~~~a~slGg~~Slv~~p~~~th~~~~~~~~~~~Gi~~~liRlS----vGlEd~eDLi~Dl~~Al~~ 424 (432)
T PRK06702 357 IANVKLATLVTHVADARTCVIHPASTTHRQLSAEDQRLAGVTSDLIRLS----VGIEDVSDIIADLEAALVG 424 (432)
T ss_pred HHhCccceeccccCCCCcceECCCCCCcccCCHHHHHhcCCCCCeEEEE----eccCCHHHHHHHHHHHHhc
Confidence 66664222111 111 24689999 4556788888888888765
No 320
>PRK08134 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=99.34 E-value=6e-11 Score=102.18 Aligned_cols=217 Identities=18% Similarity=0.176 Sum_probs=125.3
Q ss_pred ccccCCCChhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCC
Q psy6548 4 QFPVKSKQVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVR 82 (242)
Q Consensus 4 ~~~~~~~d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~ 82 (242)
+..++-+|+++ +...+++|++|+++.+.|++|.+.+ +++|+++|++||+++|+|.++. .+.. . ......
T Consensus 131 v~~vd~~d~~~l~~~i~~~TklV~~e~~~np~g~v~D----i~~I~~la~~~gi~livD~t~a----~~~~-~-~pl~~G 200 (433)
T PRK08134 131 TTFVKPGDIDGWRAAIRPNTRLLFGETLGNPGLEVLD----IPTVAAIAHEAGVPLLVDSTFT----TPYL-L-RPFEHG 200 (433)
T ss_pred EEEECCCCHHHHHHhcCCCCeEEEEECCCcccCcccC----HHHHHHHHHHcCCEEEEECCCc----cccc-C-CchhcC
Confidence 33455567887 6666778999999999999997776 9999999999999999999984 1111 1 112345
Q ss_pred CCEEEee--ccccC-CccchheeEe-Chhh-------hhccCCCC--------------------------CCCCCCCCH
Q psy6548 83 PDIVILG--KALSG-GLYPISAVLA-DDEV-------MGTLVPGT--------------------------HGSTYGGNP 125 (242)
Q Consensus 83 ~~~~~~s--K~~~~-g~~~~g~~~~-~~~~-------~~~l~~~~--------------------------~~~~~~~~~ 125 (242)
.|++++| |.++| | -.+|.++. .... ...+.+.. .......++
T Consensus 201 aD~vv~S~tK~l~g~g-~~~gG~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~~ls~ 279 (433)
T PRK08134 201 ADLVYHSATKFLGGHG-TAIGGVLVDGGRFDWEASGKFPELTEPYAGFHGMVFAEESTVAAFLLRARREGLRDFGACLSP 279 (433)
T ss_pred CCEEEeccccccCCCC-CceEEEEEecCccccccccccccccCCcccccccchhhccchhHHHHHHHHHHHHhcCCCCCH
Confidence 6887754 98884 2 22343332 1110 00111000 000112233
Q ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhhcCC-------CCCCe---------E-eeeceeEEEEecCCchhH
Q psy6548 126 LACKLAMTALDVILEENMIENAYKMGEIFRSELRSRLSP-------DIVPV---------V-RGKGLLNAIVLDKSILEV 188 (242)
Q Consensus 126 ~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l~~~l~~-------~~~~~---------~-~~~~~~~~~~~~~~~~~~ 188 (242)
..+...+..++.+ +...++..+++..+.+.| +..+. ..... . .+.|.++.|++..+...+
T Consensus 280 ~~A~l~~~gL~tl--~~R~~~~~~nA~~la~~L-~~~p~V~~V~yP~l~~~p~~~~~~~~~~~g~gg~~s~~l~~~~~~~ 356 (433)
T PRK08134 280 MNAWQLLQGIETL--PLRMERHVANTRKVVAFL-ASHPAVARVAHPELESHPDHALAKRLLPRGAGSVFSFDLKGGRAAG 356 (433)
T ss_pred HHHHHHhcCCCcH--HHHHHHHHHHHHHHHHHH-HhCCCccEEECCCCCCCccHHHHHHhCCCCCceEEEEEecCCHHHH
Confidence 3333333333322 234566777888888888 55442 11111 1 345788899986532445
Q ss_pred HHHHHHHHHCCcee----------ccC-----------------CCCEEEEeccCcCCHHHHHHHHHHHHHHHHHHh
Q psy6548 189 YDVCIKMKDAGLVT----------KPI-----------------SNNIIRLSPALNITEQELREGLDIIINTINTMA 238 (242)
Q Consensus 189 ~~~~~~l~~~gi~~----------~~~-----------------~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~~ 238 (242)
..|.+.|.--.+.. .|. ..+.||++ ...|+.+.+++.|+++++.+.
T Consensus 357 ~~f~~~l~l~~~~~slG~~~sL~~~p~~~~h~~~~~~~~~~~Gi~~~liRls----vGlE~~~dli~dl~~Al~~~~ 429 (433)
T PRK08134 357 RKFIESLKLFSHLANVGDARSLVIHPASTTHFRMDAAALAAAGIGEGTIRLS----IGLEDADDLIDDLKRALKAAE 429 (433)
T ss_pred HHHHHhCCcceeccccCCCCceeeCCCccCcccCCHHHHHhcCCCCCeEEEE----eccCCHHHHHHHHHHHHHhhh
Confidence 66766664222111 111 24689999 445677778888888777643
No 321
>PRK12566 glycine dehydrogenase; Provisional
Probab=99.33 E-value=2.5e-10 Score=104.46 Aligned_cols=207 Identities=12% Similarity=0.118 Sum_probs=123.1
Q ss_pred CCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEecccc-ccCccCcccccccCCCCCCEEEee--cccc---
Q psy6548 20 PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQT-GLGRTGKLLAIHYEDVRPDIVILG--KALS--- 93 (242)
Q Consensus 20 ~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~-~~~~~g~~~~~~~~~~~~~~~~~s--K~~~--- 93 (242)
+++++|.+..+++.++ +. +.+++|+++|+++|+++++|.++. +.... . .--.+..|+++++ |+|+
T Consensus 640 ~~laaVmiT~Pnt~Gv-~e---~~V~eI~~iah~~Galv~vDgA~~~a~~~l----~-~Pg~~GADi~~~s~HKtf~~P~ 710 (954)
T PRK12566 640 DRLSCLMITYPSTHGV-YE---EGIREICEVVHQHGGQVYMDGANLNAQVGL----A-RPADIGADVSHMNLHKTFCIPH 710 (954)
T ss_pred CCEEEEEEEecCcCce-ec---chHHHHHHHHHHcCCEEEEEeeChhhccCC----C-ChhhcCCCEEEecCCcccCcCc
Confidence 6788777777666553 22 339999999999999999999984 22111 1 0113467998865 9887
Q ss_pred --CCccchheeEeChhhhhccCCCC----------CCCC---CCCCHHHHHHHHHHHHHHHhccHH---HHHHHHHHHHH
Q psy6548 94 --GGLYPISAVLADDEVMGTLVPGT----------HGST---YGGNPLACKLAMTALDVILEENMI---ENAYKMGEIFR 155 (242)
Q Consensus 94 --~g~~~~g~~~~~~~~~~~l~~~~----------~~~~---~~~~~~~~~~a~a~l~~~~~~~~~---~~~~~~~~~l~ 155 (242)
|| ..+|.+...+++...+.... .+.+ .+.+...+..++.-++.+-.+ +. .....++++++
T Consensus 711 G~GG-P~vG~iav~~~L~pfLp~~P~~d~~G~~~r~ga~S~~~~gsa~~l~~A~~Yi~~lG~e-Lk~aa~~ailnAnYla 788 (954)
T PRK12566 711 GGGG-PGMGPIGVRAHLAPFVANHPVVPVEGPDPNNGAVSAAPWGSASILPISWMYIAMMGPQ-LADASEVAILSANYLA 788 (954)
T ss_pred cCCC-CccchhhhhhhhhhhccCCCCcCCCCCCCCCCceeecccchHHHHHHHHHHHHHHCHH-HHHHHHHHHHHHHHHH
Confidence 33 45666666665555544311 1111 111212222233333333223 22 22245888899
Q ss_pred HHHHhhcCCCCCCeEe--eeceeEEEEec---C-CchhHHHHHHHHHHCCceecc---CCCCEEEEeccCcCCHHHHHHH
Q psy6548 156 SELRSRLSPDIVPVVR--GKGLLNAIVLD---K-SILEVYDVCIKMKDAGLVTKP---ISNNIIRLSPALNITEQELREG 226 (242)
Q Consensus 156 ~~l~~~l~~~~~~~~~--~~~~~~~~~~~---~-~~~~~~~~~~~l~~~gi~~~~---~~~~~lR~~~~~~~t~e~i~~~ 226 (242)
++| +.... ...... ....-..+.+. . .+.+..++.++|.+.|+.... ...+.+|++|+...+++|+|++
T Consensus 789 ~rL-~~~~~-v~~~~~~~~~~hEfii~~~~l~~~~g~~~~dvakRL~d~Gihapt~~fPv~~~LmIepTE~eskeEIDrf 866 (954)
T PRK12566 789 NQL-GGAFP-VLYRGRNERVAHECILDLRPLKAQTGISEEDVAKRLMDYGFHAPTMSFPVPGTLMVEPTESESKAELDRF 866 (954)
T ss_pred HHh-HhhCC-CCcCCCCCCeeeEEEEEccccccccCCCHHHHHHHHHHCCcEEeEEeeccCCEEEEEeeeeCCHHHHHHH
Confidence 989 44221 111111 11122223332 1 114568899999998887642 2377899999999999999999
Q ss_pred HHHHHHHHHHHhh
Q psy6548 227 LDIIINTINTMAA 239 (242)
Q Consensus 227 ~~~l~~~l~~~~~ 239 (242)
++.|..+.+++.+
T Consensus 867 ~eAL~~I~~e~~~ 879 (954)
T PRK12566 867 VEAMLSIRAEIGK 879 (954)
T ss_pred HHHHHHHHHHHHH
Confidence 9999998887543
No 322
>PRK02769 histidine decarboxylase; Provisional
Probab=99.33 E-value=2.5e-10 Score=96.70 Aligned_cols=196 Identities=12% Similarity=0.108 Sum_probs=131.8
Q ss_pred CEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhC---CEEEEeccccccCc-cCcc-cccccCCCCCCEEEee--cccc
Q psy6548 21 NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYN---VLFIADEVQTGLGR-TGKL-LAIHYEDVRPDIVILG--KALS 93 (242)
Q Consensus 21 ~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~---~~li~De~~~~~~~-~g~~-~~~~~~~~~~~~~~~s--K~~~ 93 (242)
++.+|++....+++|.+-| +++|+++|++|| +++++|.+|.++.- .-.. ..++... ..|.+++| |.++
T Consensus 160 ~t~lvv~t~gtt~tG~idp----i~~I~~i~~~~g~~~~~lHVDaA~gg~~~p~~~~~~~~d~~~-~vDsis~s~HK~~~ 234 (380)
T PRK02769 160 QPPIIFANIGTTMTGAIDN----IKEIQEILKKIGIDDYYIHADAALSGMILPFVNNPPPFSFAD-GIDSIAISGHKFIG 234 (380)
T ss_pred CcEEEEEEeCCCCCcccCC----HHHHHHHHHHhCCCceEEEEEecccceeecccCccccCCccC-CCCEEEECCcccCC
Confidence 5889999999999998877 999999999998 69999999976311 0000 0111111 46877755 9888
Q ss_pred CCccchheeEeChhhhhccCCCC-----CCCCC--CCCHHHHHHHHHHHHHHHhc---cHHHHHHHHHHHHHHHHHhhcC
Q psy6548 94 GGLYPISAVLADDEVMGTLVPGT-----HGSTY--GGNPLACKLAMTALDVILEE---NMIENAYKMGEIFRSELRSRLS 163 (242)
Q Consensus 94 ~g~~~~g~~~~~~~~~~~l~~~~-----~~~~~--~~~~~~~~~a~a~l~~~~~~---~~~~~~~~~~~~l~~~l~~~l~ 163 (242)
++ .++|.++.+++..+.+.+.. ...++ +.+....++.+++++.+..+ +..++..++++++.++| +..+
T Consensus 235 ~P-~g~G~l~~r~~~~~~~~~~~~yl~~~d~t~~GSR~g~~~l~lw~aL~~lg~~G~~~~~~~~~~la~~l~~~L-~~~g 312 (380)
T PRK02769 235 SP-MPCGIVLAKKKYVERISVDVDYIGSRDQTISGSRNGHTALLLWAAIRSLGSKGLRQRVQHCLDMAQYAVDRL-QANG 312 (380)
T ss_pred CC-CCcEEEEEehhhhhhcccCccccCCCCCCccCCCCcHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH-HhCC
Confidence 77 88999988877766553311 11122 23345666777888877553 45677778888888888 5543
Q ss_pred CCCCCeEeeeceeEEEEecCCchhHHHHHHHHHHCCceeccCCCCEEEEeccCcCCHHHHHHHHHHHHHHHHH
Q psy6548 164 PDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINT 236 (242)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~ 236 (242)
+.....+....+.|..+.+ .+ .+|..+.+. ++.+|++....++.|.++.+++.|.+....
T Consensus 313 --~~~~~~p~~~~v~f~~~~~-----~~-----~~~w~l~~~-~~~~hi~~~~~~~~~~~~~f~~dl~~~~~~ 372 (380)
T PRK02769 313 --IPAWRNPNSITVVFPCPSE-----RI-----WKKWHLATS-GNQAHIITMPHHNKQQIDSLIDELIFDLKN 372 (380)
T ss_pred --CEEEcCCCceEEEEcCCCH-----HH-----HhCeeEccc-CCEEEEEECCCCCHHHHHHHHHHHHHHHhc
Confidence 2222233444555543331 22 267777766 458999988888999999999999887653
No 323
>PRK11658 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase; Provisional
Probab=99.32 E-value=2.2e-10 Score=97.48 Aligned_cols=208 Identities=20% Similarity=0.244 Sum_probs=121.0
Q ss_pred Chhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEecccc-ccCccCcccccccCCCCCCEEEe
Q psy6548 11 QVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQT-GLGRTGKLLAIHYEDVRPDIVIL 88 (242)
Q Consensus 11 d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~-~~~~~g~~~~~~~~~~~~~~~~~ 88 (242)
|+++ +...++++++|+ +++ ++|...+ +++|.++|++||+++|+|++|+ |....|.. ...++ .++.+|
T Consensus 110 d~~~l~~~i~~~tkav~--~~~-~~G~~~d----~~~i~~~a~~~gi~vi~D~a~a~g~~~~~~~--~g~~g--~~~~Sf 178 (379)
T PRK11658 110 TPEAIEAAITPRTKAII--PVH-YAGAPAD----LDAIRAIGERYGIPVIEDAAHAVGTYYKGRH--IGARG--TAIFSF 178 (379)
T ss_pred CHHHHHHhcccCCeEEE--EeC-CCCCcCC----HHHHHHHHHHcCCeEEEECCCccCCeECCee--cCCCC--CEEEeC
Confidence 4555 444456788877 333 3565443 8999999999999999999996 32222211 12223 255565
Q ss_pred e--ccccCCccchheeEeC-hhhhhccCCCC-C-----------------------CCCCCCCHHHHHHHHHHHHHHHhc
Q psy6548 89 G--KALSGGLYPISAVLAD-DEVMGTLVPGT-H-----------------------GSTYGGNPLACKLAMTALDVILEE 141 (242)
Q Consensus 89 s--K~~~~g~~~~g~~~~~-~~~~~~l~~~~-~-----------------------~~~~~~~~~~~~~a~a~l~~~~~~ 141 (242)
+ |.+.+| ..|+++.+ +++.+++++.. + ++++..+.+..+.++..++- -+
T Consensus 179 ~~~K~l~~g--~GG~v~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~G~n~~~~~l~AAl~~~ql~~--l~ 254 (379)
T PRK11658 179 HAIKNITCA--EGGLVVTDDDELADRLRSLKFHGLGVDAFDRQTQGRAPQAEVLTPGYKYNLADINAAIALVQLAK--LE 254 (379)
T ss_pred CCCCcCccc--CceEEEECCHHHHHHHHHHHHcCCCcchhhhhcccCCCcceeeccccccCcCHHHHHHHHHHHHH--HH
Confidence 5 777654 46666654 67766554310 0 11222233333333333332 24
Q ss_pred cHHHHHHHHHHHHHHHHHhhcCCCCCCeE----eeeceeEEEEecCC--chhHHHHHHHHHHCCceecc----C------
Q psy6548 142 NMIENAYKMGEIFRSELRSRLSPDIVPVV----RGKGLLNAIVLDKS--ILEVYDVCIKMKDAGLVTKP----I------ 205 (242)
Q Consensus 142 ~~~~~~~~~~~~l~~~l~~~l~~~~~~~~----~~~~~~~~~~~~~~--~~~~~~~~~~l~~~gi~~~~----~------ 205 (242)
+..++.+++.+++++.| +.++......+ ........+.++.. +.+.+++.++|.++||.++. .
T Consensus 255 ~~~~~r~~~a~~~~~~L-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~L~~~gI~~~~~~~~~~~~~~~ 333 (379)
T PRK11658 255 ALNARRREIAARYLQAL-ADLPFQPLSLPAWPHQHAWHLFIIRVDEERCGISRDALMEALKERGIGTGLHFRAAHTQKYY 333 (379)
T ss_pred HHHHHHHHHHHHHHHHh-cCCCCccCcCCCCCCceeEEEEEEEECCccccCCHHHHHHHHHHCCCCCcccCcCcccChhh
Confidence 46677788888888888 66542111111 11112333444321 13578999999999987652 1
Q ss_pred ---------------CCCEEEEeccCcCCHHHHHHHHHHHHHHH
Q psy6548 206 ---------------SNNIIRLSPALNITEQELREGLDIIINTI 234 (242)
Q Consensus 206 ---------------~~~~lR~~~~~~~t~e~i~~~~~~l~~~l 234 (242)
....+.+-++...++|++++.++.|++++
T Consensus 334 ~~~~~~~~~p~~~~~~~~~l~lP~~~~l~~~~~~~i~~~i~~~~ 377 (379)
T PRK11658 334 RERFPTLSLPNTEWNSERICSLPLFPDMTDADVDRVITALQQIA 377 (379)
T ss_pred hccCCCCCChHHHHHHhCeEEccCCCCCCHHHHHHHHHHHHHHH
Confidence 11345555567789999999999998865
No 324
>PRK05367 glycine dehydrogenase; Provisional
Probab=99.32 E-value=3.6e-10 Score=105.12 Aligned_cols=209 Identities=13% Similarity=0.157 Sum_probs=125.7
Q ss_pred CCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEecccc-ccCccCcccccccCCCCCCEEEee--cccc---
Q psy6548 20 PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQT-GLGRTGKLLAIHYEDVRPDIVILG--KALS--- 93 (242)
Q Consensus 20 ~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~-~~~~~g~~~~~~~~~~~~~~~~~s--K~~~--- 93 (242)
.++++|++..+... |.+..+ +++|+++|+++|+++++|.++. ++.....+ . ....|+++++ |+|+
T Consensus 639 ~~la~V~it~pst~-G~~e~~---I~eI~~i~h~~G~~v~VDgA~~~al~~l~~p---g--~~GADi~~~s~HK~f~~P~ 709 (954)
T PRK05367 639 DNLAAIMITYPSTH-GVFEET---IREICEIVHEHGGQVYLDGANMNAQVGLARP---G--DIGADVSHLNLHKTFCIPH 709 (954)
T ss_pred CCeEEEEEEcCCCC-eeecCC---HHHHHHHHHHcCCEEEEECcChhhccCCCCh---h--hcCCCEEEecCcccCCCCc
Confidence 36777777665544 433332 9999999999999999999995 22111111 1 2356888866 9987
Q ss_pred --CCccchheeEeChhhhhccCCCCCC--------CCCCCCHH----HHHHHHHHHHHHHhccHHHHHH---HHHHHHHH
Q psy6548 94 --GGLYPISAVLADDEVMGTLVPGTHG--------STYGGNPL----ACKLAMTALDVILEENMIENAY---KMGEIFRS 156 (242)
Q Consensus 94 --~g~~~~g~~~~~~~~~~~l~~~~~~--------~~~~~~~~----~~~~a~a~l~~~~~~~~~~~~~---~~~~~l~~ 156 (242)
|| -.+|.+...+++...+.....+ ++....+. .+..++..+..+-.+++.+..+ .+++++.+
T Consensus 710 G~GG-Pg~G~l~vr~~l~p~lpg~~v~~~~~~~~~g~v~ta~~g~al~~~~a~~yi~~~G~~Glr~~a~~~~~~A~Yl~~ 788 (954)
T PRK05367 710 GGGG-PGVGPIGVKAHLAPFLPGHPVQIAGGETGIGAVSAAPFGSASILPISWMYIRMMGAEGLRQATEVAILNANYIAK 788 (954)
T ss_pred CCCC-CceEEEeecccccccCCCCccCcCCCCCCcCcchhHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
Confidence 34 4466777776555444322110 11111122 1122333334333455555555 78999999
Q ss_pred HHHhhcCCCCCCe---EeeeceeEEE-EecCC-chhHHHHHHHHHHCCceeccC---CCCEEEEeccCcCCHHHHHHHHH
Q psy6548 157 ELRSRLSPDIVPV---VRGKGLLNAI-VLDKS-ILEVYDVCIKMKDAGLVTKPI---SNNIIRLSPALNITEQELREGLD 228 (242)
Q Consensus 157 ~l~~~l~~~~~~~---~~~~~~~~~~-~~~~~-~~~~~~~~~~l~~~gi~~~~~---~~~~lR~~~~~~~t~e~i~~~~~ 228 (242)
+| +..-...... .....+++.+ .++.. +....++.++|.+.|+..... ..+.+|++|+...+++|+|++++
T Consensus 789 ~L-~~~~~~~~~~~~~~~~~e~i~~~~~~~~~~g~~~~di~krL~d~G~~~~t~~~pv~~~l~i~ptE~~s~~elDr~~~ 867 (954)
T PRK05367 789 RL-KDHYPVLYTGANGRVAHECILDLRPLKESTGITVDDIAKRLIDYGFHAPTMSFPVAGTLMVEPTESESKAELDRFCD 867 (954)
T ss_pred HH-HhhcCccccCCCCCcccceEEEeecccccCCCCHHHHHHHHHHCCCeEeecCCccCCEEEEEeeecCCHHHHHHHHH
Confidence 99 4432111111 0011122222 12211 145788999999999987532 37789999999999999999999
Q ss_pred HHHHHHHHHhh
Q psy6548 229 IIINTINTMAA 239 (242)
Q Consensus 229 ~l~~~l~~~~~ 239 (242)
.+..+..++.+
T Consensus 868 al~~i~~e~~~ 878 (954)
T PRK05367 868 AMIAIRAEIDE 878 (954)
T ss_pred HHHHHHHHHHH
Confidence 99988887654
No 325
>COG2873 MET17 O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism]
Probab=99.31 E-value=2.4e-10 Score=93.12 Aligned_cols=217 Identities=17% Similarity=0.196 Sum_probs=132.5
Q ss_pred ccccCCCChhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCC
Q psy6548 4 QFPVKSKQVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVR 82 (242)
Q Consensus 4 ~~~~~~~d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~ 82 (242)
+..++-+|++. +...+.+|++|++|..-||.++++. ++.++++|++||+++|+|.... .++.++-....
T Consensus 129 v~fvd~~d~~~~~~aI~~nTkavf~EtigNP~~~v~D----ie~ia~iAh~~gvpliVDNT~a------tpyl~rP~~hG 198 (426)
T COG2873 129 VRFVDPDDPENFEAAIDENTKAVFAETIGNPGLDVLD----IEAIAEIAHRHGVPLIVDNTFA------TPYLCRPIEHG 198 (426)
T ss_pred EEEeCCCCHHHHHHHhCcccceEEEEeccCCCccccC----HHHHHHHHHHcCCcEEEecCCC------cceecchhhcC
Confidence 45566777787 8888999999999999999997765 9999999999999999998764 12344444567
Q ss_pred CCEEE--eeccccC-CccchheeEeCh---hhhh--cc------CCCCCCCCC----CCCHHHHHHHHHHHHHH------
Q psy6548 83 PDIVI--LGKALSG-GLYPISAVLADD---EVMG--TL------VPGTHGSTY----GGNPLACKLAMTALDVI------ 138 (242)
Q Consensus 83 ~~~~~--~sK~~~~-g~~~~g~~~~~~---~~~~--~l------~~~~~~~~~----~~~~~~~~~a~a~l~~~------ 138 (242)
.|+++ .+|.++| | -.+|.++... ++.. ++ .+.+++..+ ....+...+-...++.+
T Consensus 199 ADIVvHS~TK~igGhG-t~iGG~iVD~G~FDw~~~~rfP~~~~p~p~YhGl~~~~~~g~~af~~~~r~~~lRDlGa~lsP 277 (426)
T COG2873 199 ADIVVHSATKYIGGHG-TAIGGVIVDGGKFDWTANGRFPEFTTPDPSYHGLVYTETFGNAAFIIKARVQLLRDLGATLSP 277 (426)
T ss_pred CCEEEEeecccccCCc-cccceEEEeCCccccccCCCCcccCCCCccccceehhhhcccHHHHHHHHHHHHHhcccccCc
Confidence 88888 7799994 4 5566554322 2220 11 111233222 11111111111112221
Q ss_pred ----------Hh-ccHHHHHHHHHHHHHHHHHhhcCCC-------C----------CCeEeeeceeEEEEecCCchhHHH
Q psy6548 139 ----------LE-ENMIENAYKMGEIFRSELRSRLSPD-------I----------VPVVRGKGLLNAIVLDKSILEVYD 190 (242)
Q Consensus 139 ----------~~-~~~~~~~~~~~~~l~~~l~~~l~~~-------~----------~~~~~~~~~~~~~~~~~~~~~~~~ 190 (242)
++ .=..++-.+++..+.+.| +..+.. . ...+.+.|.++.|.+....+..+.
T Consensus 278 fnAfl~lqGlETL~LRmerH~~NA~~vA~~L-~~HpkV~~V~YpgL~~~~~h~la~kyl~~g~g~vltF~~kgg~ea~~~ 356 (426)
T COG2873 278 FNAFLLLQGLETLSLRMERHCENALKVAEFL-ENHPKVAWVNYPGLASHPYHALAKKYLPKGAGAVLTFGVKGGYEAGKK 356 (426)
T ss_pred HHHHHHHhchhhhHHHHHHHHHhHHHHHHHH-hcCCCeeeeecCCCCCCcchhHHHhhccCCCceEEEEEecChHHHHHH
Confidence 11 112355556778888888 554431 0 012345577888888887444455
Q ss_pred HHHHHHH----------CCceeccC-----------------CCCEEEEeccCcCCHHHHHHHHHHHHHHHHH
Q psy6548 191 VCIKMKD----------AGLVTKPI-----------------SNNIIRLSPALNITEQELREGLDIIINTINT 236 (242)
Q Consensus 191 ~~~~l~~----------~gi~~~~~-----------------~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~ 236 (242)
|.+.|.- +-+++.|. .++.||+| ..-|+++.++.-|++++++
T Consensus 357 fi~~l~L~s~laNvGD~rsLvIHPAsTTH~ql~~ee~~~aGv~~~~IRlS----VGIEd~~DiiaDl~qAl~~ 425 (426)
T COG2873 357 FIDALKLFSHLANIGDARSLVIHPASTTHRQLSEEEQAAAGVTPDLIRLS----VGIEDIDDIIADLEQALEA 425 (426)
T ss_pred HHHHHHHHHhhccccccceeEecCcccchhcCCHHHHHhcCCCCCcEEEE----eccCCHHHHHHHHHHHHhc
Confidence 5555531 24444442 46789999 4457888888888887754
No 326
>PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B ....
Probab=99.30 E-value=1.3e-11 Score=104.32 Aligned_cols=215 Identities=18% Similarity=0.138 Sum_probs=123.5
Q ss_pred ccccCCCChhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhC-CEEEEeccccccCccCcccccccCCC
Q psy6548 4 QFPVKSKQVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYN-VLFIADEVQTGLGRTGKLLAIHYEDV 81 (242)
Q Consensus 4 ~~~~~~~d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~-~~li~De~~~~~~~~g~~~~~~~~~~ 81 (242)
+..++-+|+++ +...++++++|++|++.|+...++. +++++++|+++| +++++|.+... +..+..+..
T Consensus 122 v~~~d~~d~~~l~~~l~~~t~~v~~EspsNP~l~v~D----l~~i~~~a~~~g~~~~vVDnT~at------p~~~~pL~~ 191 (386)
T PF01053_consen 122 VTFVDPTDLEALEAALRPNTKLVFLESPSNPTLEVPD----LEAIAKLAKEHGDILVVVDNTFAT------PYNQNPLEL 191 (386)
T ss_dssp EEEESTTSHHHHHHHHCTTEEEEEEESSBTTTTB-------HHHHHHHHHHTTT-EEEEECTTTH------TTTC-GGGG
T ss_pred EEEeCchhHHHHHhhccccceEEEEEcCCCccccccc----HHHHHHHHHHhCCceEEeeccccc------eeeeccCcC
Confidence 34566677888 6555669999999999999876664 999999999998 99999998742 112222233
Q ss_pred CCCEEE--eeccccCCc-cchheeEeC--hhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Q psy6548 82 RPDIVI--LGKALSGGL-YPISAVLAD--DEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRS 156 (242)
Q Consensus 82 ~~~~~~--~sK~~~~g~-~~~g~~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~ 156 (242)
..|+++ .+|.++|.- .=.|.++.+ +++.+.++..........+|..+......++.+ +-..++..+++..+.+
T Consensus 192 GaDivv~S~TKyl~Ghsdv~~G~vv~~~~~~~~~~l~~~~~~~G~~~~p~da~ll~rgl~Tl--~~R~~~~~~nA~~lA~ 269 (386)
T PF01053_consen 192 GADIVVHSATKYLSGHSDVMGGAVVVNGSSELYDRLREFRRLLGATLSPFDAWLLLRGLRTL--PLRMERQNENAEALAE 269 (386)
T ss_dssp T-SEEEEETTTTTTTSSSE-EEEEEESSHHHHHHHHHHHHHHHT-B--HHHHHHHHHHHTTH--HHHHHHHHHHHHHHHH
T ss_pred CceEEEeeccccccCCcceeeEEEEECchhhhhhhhcchhhhcCccchHHHHHHHhcCCCcH--HHHHHHHHHHHHHHHH
Confidence 468777 669988420 225566654 466665543211111122333333323333322 2245667778888888
Q ss_pred HHHhhcCCC-------CCC---------eEeeeceeEEEEecCCchhHHHHHHHHHHC--Ccee--------ccC-----
Q psy6548 157 ELRSRLSPD-------IVP---------VVRGKGLLNAIVLDKSILEVYDVCIKMKDA--GLVT--------KPI----- 205 (242)
Q Consensus 157 ~l~~~l~~~-------~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--gi~~--------~~~----- 205 (242)
.| +..+.. ... ...+.|.++.|++......+..|.+.|.-- |.-+ .|.
T Consensus 270 ~L-~~hp~V~~V~yPgl~s~p~~~~~~~~~~g~ggl~sf~l~~~~~~~~~f~~~l~l~~~~~SlGg~~SLi~~p~~~~h~ 348 (386)
T PF01053_consen 270 FL-EEHPKVKRVYYPGLPSHPQHELAKRQMSGGGGLLSFELKGGEEAARRFLDALKLFSIAPSLGGVESLISHPASTSHR 348 (386)
T ss_dssp HH-HTSTTEEEEEETTSTTSTTHHHHHHHCSSCTSEEEEEESSHHHHHHHHHHH-SSSEESSS-SSSS-EEEETTCTTTT
T ss_pred HH-HhCCCCCeEEEcccccccceeeeeecccccCceeEEEeccchhhhHhHHhhhhhHhhhhhcCCcccccccccchhhc
Confidence 88 555421 110 112445699999988722566777777421 1111 111
Q ss_pred ------------CCCEEEEeccCcCCHHHHHHHHHHHHHHHH
Q psy6548 206 ------------SNNIIRLSPALNITEQELREGLDIIINTIN 235 (242)
Q Consensus 206 ------------~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~ 235 (242)
.++.+|++ ...|+.+.+++.|+++++
T Consensus 349 ~~~~e~~~~~Gi~~~liRlS----vGlEd~~dLi~Dl~~AL~ 386 (386)
T PF01053_consen 349 SLSPEERAEAGISDGLIRLS----VGLEDPDDLIADLEQALE 386 (386)
T ss_dssp TSCHHHHHHTTS-TTEEEEE------SS-HHHHHHHHHHHHH
T ss_pred cCChhhhhccCCCCCeeEEE----eccCCHHHHHHHHHHhcC
Confidence 24789999 345678888888887764
No 327
>PRK04311 selenocysteine synthase; Provisional
Probab=99.28 E-value=9.1e-10 Score=95.33 Aligned_cols=218 Identities=14% Similarity=0.121 Sum_probs=128.0
Q ss_pred CChhh-hcCCCCCEEEEEEcccccC--CC--cccCCHHHHHHHHHHHHhhCCEEEEeccccccCcc------Cccccccc
Q psy6548 10 KQVPA-KLKSNPNICAFMVEPIQGE--AG--AVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRT------GKLLAIHY 78 (242)
Q Consensus 10 ~d~~~-~~~~~~~~~~i~~e~~~~~--~G--~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~------g~~~~~~~ 78 (242)
.++++ +...+++|++++++...|+ .| ..++ +++|+++|++||+++|+|....-++.. +.+...+.
T Consensus 204 t~~~dle~aI~~~TklV~~vh~sN~~i~G~~~~~d----l~eI~~lak~~gi~vivD~gsG~l~~~~~~gl~~~p~~~~~ 279 (464)
T PRK04311 204 THLRDYEQAINENTALLLKVHTSNYRIEGFTKEVS----LAELAALGKEHGLPVVYDLGSGSLVDLSQYGLPDEPTVQEL 279 (464)
T ss_pred CCHHHHHHhcCccCeEEEEEcCCCccccccCCcCC----HHHHHHHHHHcCCeEEEECCCcccccchhccCCCCCchhhH
Confidence 34555 5555678999999887664 34 2333 999999999999999999853212111 11111111
Q ss_pred CCCCCCEEEee--ccccCCccchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHh--ccH-----------
Q psy6548 79 EDVRPDIVILG--KALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILE--ENM----------- 143 (242)
Q Consensus 79 ~~~~~~~~~~s--K~~~~g~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~--~~~----------- 143 (242)
.....|++++| |+++|+ ..|++++++++++++++....-.+...-..+++..+++....+ +.+
T Consensus 280 l~~GaDiv~fSg~K~LgGp--~~G~i~g~~~li~~l~~~~~~r~lr~dk~~l~~l~~~l~~~~~~~~~~~~i~~l~~l~~ 357 (464)
T PRK04311 280 LAAGVDLVTFSGDKLLGGP--QAGIIVGKKELIARLKKHPLKRALRVDKLTLAALEATLRLYLDPEKLAEEIPTLRLLTR 357 (464)
T ss_pred HhcCCcEEEecCcccccCC--ceEEEEEcHHHHHHHhhchhHHHHhcchHHHHHHHHHHHHHhChhhhhhhCcHHHHhcC
Confidence 22467999987 999876 3788999999988877422222222222333333444442211 111
Q ss_pred -HHHHHHHHHHHHHHHHhhcCCCCCCeEe------ee-------ceeEEEEecCCchhHHHHHHHHHHC--CceeccCCC
Q psy6548 144 -IENAYKMGEIFRSELRSRLSPDIVPVVR------GK-------GLLNAIVLDKSILEVYDVCIKMKDA--GLVTKPISN 207 (242)
Q Consensus 144 -~~~~~~~~~~l~~~l~~~l~~~~~~~~~------~~-------~~~~~~~~~~~~~~~~~~~~~l~~~--gi~~~~~~~ 207 (242)
.+..++++..+.+.|+...+........ +. -+-+.+.+......+.++.++|++- .|+.+. ..
T Consensus 358 ~~~~~~~~A~~la~~L~~~~~~~~~~~~~~~~~~~gggs~p~~~~~~~~v~~~~~~~~~~~l~~~lr~~~~~i~~r~-~~ 436 (464)
T PRK04311 358 SPEELRARAERLAAALKAALGAAFAVEVVPSFSQVGGGSLPVDRLPSAAVTLTPKDRSLEALAARLRLLPPPVIGRI-ED 436 (464)
T ss_pred CHHHHHHHHHHHHHHHHhccCCCeeEEEEEccCccCCCCCcCCCCCeEEEEEeCCCCCHHHHHHHHhcCCCCEEEEE-EC
Confidence 2566667888888883322111100000 00 1233344443224678899999874 566653 46
Q ss_pred CEEEEeccCcCCHHHHHHHHHHHHHHHH
Q psy6548 208 NIIRLSPALNITEQELREGLDIIINTIN 235 (242)
Q Consensus 208 ~~lR~~~~~~~t~e~i~~~~~~l~~~l~ 235 (242)
+.+.+-+... .++|++.++++|.+++.
T Consensus 437 ~~~~ld~r~~-~~~~~~~~~~~~~~~~~ 463 (464)
T PRK04311 437 GRLLLDLRTL-EEEDEERLAAALLEALN 463 (464)
T ss_pred CEEEEEeCcC-CHHHHHHHHHHHHHHhh
Confidence 7777765544 77899999999988754
No 328
>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=99.26 E-value=2.1e-10 Score=96.36 Aligned_cols=211 Identities=17% Similarity=0.155 Sum_probs=130.6
Q ss_pred cCCCChhh--hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCC
Q psy6548 7 VKSKQVPA--KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPD 84 (242)
Q Consensus 7 ~~~~d~~~--~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~ 84 (242)
++-.+.+. +++.++++++|++|++-|++-.+.. +++++++|+++|+++|+|.+.+. +..++-+....|
T Consensus 133 ~d~~~~~~~~~~~~~~~tk~v~lEtPsNP~l~v~D----I~~i~~~A~~~g~~vvVDNTfat------P~~q~PL~~GaD 202 (396)
T COG0626 133 VDPGDDEALEAAIKEPNTKLVFLETPSNPLLEVPD----IPAIARLAKAYGALVVVDNTFAT------PVLQRPLELGAD 202 (396)
T ss_pred ECCCChHHHHHHhcccCceEEEEeCCCCccccccc----HHHHHHHHHhcCCEEEEECCccc------ccccChhhcCCC
Confidence 34334433 5555579999999999999875554 99999999999999999998752 223334455678
Q ss_pred EEE--eeccccCCc-cchheeEeC-hhhhhccCC--C-CCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Q psy6548 85 IVI--LGKALSGGL-YPISAVLAD-DEVMGTLVP--G-THGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSE 157 (242)
Q Consensus 85 ~~~--~sK~~~~g~-~~~g~~~~~-~~~~~~l~~--~-~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~ 157 (242)
+++ .+|-++|.. .=.|.++++ +++.+.+.. . ..+. ..+|..+...+..++.+.- ..++..+++..+.+.
T Consensus 203 IVvhSaTKyl~GHsDvl~G~v~~~~~~~~~~~~~~~~~~~G~--~l~p~dA~l~lRGlkTL~~--Rm~~~~~nA~~IA~~ 278 (396)
T COG0626 203 IVVHSATKYLGGHSDVLGGVVLTPNEELYELLFFAQRANTGA--VLSPFDAWLLLRGLRTLAL--RMERHNENALKIAEF 278 (396)
T ss_pred EEEEeccccccCCcceeeeEEecChHHHHHHHHHHHHhhcCC--CCCHHHHHHHHhccchHHH--HHHHHHHHHHHHHHH
Confidence 888 669999641 114445544 455555421 1 1222 2344444333444443322 245566678888888
Q ss_pred HHhhcCCC---CCC-------------eEeeeceeEEEEecCCchhHHHHHHHHHHCCceeccC----------------
Q psy6548 158 LRSRLSPD---IVP-------------VVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPI---------------- 205 (242)
Q Consensus 158 l~~~l~~~---~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~---------------- 205 (242)
| +..+.. ... ...+.|.++.|++..+ ..+..|.+.|.--.+..+.+
T Consensus 279 L-~~~p~V~~V~yPgl~shp~he~~~rq~~g~gg~~Sf~l~~~-~~~~~f~~~L~l~~~a~SlGgveSLi~~pa~~th~~ 356 (396)
T COG0626 279 L-ADHPKVKKVYYPGLPSHPGHELAKRQMTGYGGLFSFELKNE-EAAKKFLDSLKLFKLAESLGGVESLISHPATMTHAS 356 (396)
T ss_pred H-hcCCCeEEEECCCCCCCCcHHHHHHhcCCCceEEEEEeCCh-HHHHHHHHhCCccEEeccCCCcccccccccccCccc
Confidence 8 554321 000 1114788999999885 46777777765333222211
Q ss_pred -----------CCCEEEEeccCcCCHHHHHHHHHHHHHHHHHH
Q psy6548 206 -----------SNNIIRLSPALNITEQELREGLDIIINTINTM 237 (242)
Q Consensus 206 -----------~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~ 237 (242)
.++.+|++ ...|+++.+++-|+++++.+
T Consensus 357 ~~~~~r~~~Gi~~~LvRlS----VGlEd~eDLi~Dl~~Al~~~ 395 (396)
T COG0626 357 IPLEERAKAGITDGLVRLS----VGLEDVEDLIADLEQALAKA 395 (396)
T ss_pred CCHhHHHhcCCCCCeEEEE----ecCCCHHHHHHHHHHHHHhh
Confidence 35789999 45567778888888777653
No 329
>TIGR03531 selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium transferase. In the archaea and eukaryotes, the conversion of the mischarged serine to selenocysteine (Sec) on its tRNA is accomplished in two steps. This enzyme, O-phosphoseryl-tRNA(Sec) selenium transferase, acts second, after a phosphophorylation step catalyzed by a homolog of the bacterial SelA protein.
Probab=99.26 E-value=2.2e-10 Score=98.30 Aligned_cols=187 Identities=11% Similarity=0.121 Sum_probs=107.6
Q ss_pred HHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCC-CCCEEE--eeccccCCccchheeEe-ChhhhhccCCCCCC
Q psy6548 43 YLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDV-RPDIVI--LGKALSGGLYPISAVLA-DDEVMGTLVPGTHG 118 (242)
Q Consensus 43 ~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~-~~~~~~--~sK~~~~g~~~~g~~~~-~~~~~~~l~~~~~~ 118 (242)
.+++|+++|++||+++|+|++|......-.......... ..|+++ ++|.+..+ ...|.++. ++++++.+.....+
T Consensus 223 dL~eIa~la~k~gI~lIvDaAyg~~~~~~~~~~~~g~~~Grad~vv~s~hK~l~~p-g~Gg~I~~~d~el~~~i~~~y~g 301 (444)
T TIGR03531 223 DIEEIAKICANYDIPHIVNNAYGLQSNKYMELINKAIKVGRVDAVVSSTDKNFMVP-VGGAIIYSFDENFIQEISKSYPG 301 (444)
T ss_pred CHHHHHHHHHHcCCEEEEECcCcCcChhhhhhhhccccccCCCeEEEeCccCCCCC-CCEEEEEECCHHHHHHHHHhccC
Confidence 499999999999999999999963111100000011112 246666 56998842 12444545 57777777653222
Q ss_pred CCCCCCHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHHhhcCC--C-CCCeEeeeceeEEEEecCC-chhHHHHH
Q psy6548 119 STYGGNPLACKLAMTALDVILE--ENMIENAYKMGEIFRSELRSRLSP--D-IVPVVRGKGLLNAIVLDKS-ILEVYDVC 192 (242)
Q Consensus 119 ~~~~~~~~~~~~a~a~l~~~~~--~~~~~~~~~~~~~l~~~l~~~l~~--~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 192 (242)
.. .+..++.+...++....+ +++.++..++++++.+.| +.+.. + .....+....-..+.+..- +.+..++.
T Consensus 302 ~~--~~s~~~~~~~~ll~~G~~g~~~li~~~~~~a~~l~~~L-~~l~~~~~~~~~~~~~n~is~~~~~~~~~~~~~~~~g 378 (444)
T TIGR03531 302 RA--SASPSLDVLITLLSLGSKGYLELLKERKEMYKYLKELL-QKLAERHGERLLDTPENPISSAMTLSTLKGKDPTMLG 378 (444)
T ss_pred CC--CChHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhCcEeecCCCCceeEEEecccccccCHHHHH
Confidence 11 223444444444433322 456777778888888888 66531 1 1112222222223333311 14688899
Q ss_pred HHHHHCCce----eccCC--------------------CCEEEEeccCcCCHHHHHHHHHHHHHH
Q psy6548 193 IKMKDAGLV----TKPIS--------------------NNIIRLSPALNITEQELREGLDIIINT 233 (242)
Q Consensus 193 ~~l~~~gi~----~~~~~--------------------~~~lR~~~~~~~t~e~i~~~~~~l~~~ 233 (242)
..|+.++|- +.++. ..++-++.....+.+|++.++++|+++
T Consensus 379 ~~l~~~~v~g~r~v~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~g~~~~~~~~~~~~l~~~ 443 (444)
T TIGR03531 379 SMLYSRRVTGPRVVTNGDSKTVGGCEFKGYGSHTSNYPCPYITAAAAIGMTKEDVDTFVSRLEKS 443 (444)
T ss_pred HHHHhCCCCCceeecCCCceEECCEEeecccccccCCCchhHHHHHHhCCcHHHHHHHHHHHhhc
Confidence 999998762 22221 125556666788999999999999875
No 330
>KOG1549|consensus
Probab=99.24 E-value=5.7e-10 Score=93.16 Aligned_cols=210 Identities=14% Similarity=0.147 Sum_probs=121.9
Q ss_pred hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEEee--ccc
Q psy6548 15 KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILG--KAL 92 (242)
Q Consensus 15 ~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~s--K~~ 92 (242)
+...+.+|+++.++.++|+.|...| ++||.++|+++|+.+++|.+|. .|. ...+.-.+.+|+.+++ |++
T Consensus 175 ~~~i~~~T~lv~I~~Vnn~~gv~~P----v~EI~~icr~~~v~v~~DaAQa----vG~-i~vDV~eln~D~~s~s~HK~y 245 (428)
T KOG1549|consen 175 REAIRSKTRLVSIMHVNNEIGVLQP----VKEIVKICREEGVQVHVDAAQA----VGK-IPVDVQELNADFLSISAHKIY 245 (428)
T ss_pred HHhcCCCceEEEEEecccCcccccc----HHHHHHHhCcCCcEEEeehhhh----cCC-ccccHHHcCchheeeeccccc
Confidence 5566889999999999999998888 9999999999999999999996 333 2334445677888755 999
Q ss_pred cCCccchheeEeChhhhhccC--CCCCCC-------CCCCCHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHHhh
Q psy6548 93 SGGLYPISAVLADDEVMGTLV--PGTHGS-------TYGGNPLACKLAMTALDVILE--ENMIENAYKMGEIFRSELRSR 161 (242)
Q Consensus 93 ~~g~~~~g~~~~~~~~~~~l~--~~~~~~-------~~~~~~~~~~~a~a~l~~~~~--~~~~~~~~~~~~~l~~~l~~~ 161 (242)
|+. ++|++++.+ ...++. +...++ ..+.+.+.+.+.-++.++... ......++++-..+...+-..
T Consensus 246 gp~--~iGaLYvr~-~~~~~~~~p~~~GGgq~r~~rsGT~~~~~~~~~gsA~e~~~~~~~~~~~~~~~~~~~ll~~i~~~ 322 (428)
T KOG1549|consen 246 GPP--GIGALYVRR-KRPRLRVEPPLSGGGQERGLRSGTVATPLAVGLGSAAEFVNKEMAYDEAIIKRLSEKLLMGIGQS 322 (428)
T ss_pred CCC--cceEEEEcc-CCCcccccCcccCCccccccccCCcCchhhhhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHhhh
Confidence 943 288888775 111222 211111 011223333344455565544 233455555555565555222
Q ss_pred cCCCCCCe--EeeeceeEEEEec--CCchhHHHHHH------------------HHHHCCceeccCCCCEEEEeccCcCC
Q psy6548 162 LSPDIVPV--VRGKGLLNAIVLD--KSILEVYDVCI------------------KMKDAGLVTKPISNNIIRLSPALNIT 219 (242)
Q Consensus 162 l~~~~~~~--~~~~~~~~~~~~~--~~~~~~~~~~~------------------~l~~~gi~~~~~~~~~lR~~~~~~~t 219 (242)
+....... .........+.++ .......+... .|+..|+-... ...++||+...+++
T Consensus 323 ~~~~~~~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~s~~a~~~~~~epsy~l~~~G~~~~~-~~~~iRis~G~y~t 401 (428)
T KOG1549|consen 323 LPEVTLNGSGKSRYPGLVSLSFPYVEGESLLMDLKDVALSSGSACTSASLEPSYVLRAIGVDEDL-AHSSIRISIGRYTT 401 (428)
T ss_pred CchhhccCCcccccccceeeecccccCcchhhhhhhhhhcccchhhcCCCCcchhhhhcCcchhh-hcceeEEeeeeeCc
Confidence 33211111 1111122222222 21111111111 12222221111 25789999999999
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy6548 220 EQELREGLDIIINTINTM 237 (242)
Q Consensus 220 ~e~i~~~~~~l~~~l~~~ 237 (242)
++|++++++.+.+..+.+
T Consensus 402 ~~di~~~~~~i~~~v~~~ 419 (428)
T KOG1549|consen 402 EEDIDYLVDAIKKLVSLL 419 (428)
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 999999999998877654
No 331
>PLN02271 serine hydroxymethyltransferase
Probab=99.24 E-value=1.4e-09 Score=94.41 Aligned_cols=212 Identities=13% Similarity=0.056 Sum_probs=132.8
Q ss_pred Chhh--hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccc-cccCccCcccccccCCCCCCEEE
Q psy6548 11 QVPA--KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQ-TGLGRTGKLLAIHYEDVRPDIVI 87 (242)
Q Consensus 11 d~~~--~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~-~~~~~~g~~~~~~~~~~~~~~~~ 87 (242)
|.+. +.+...++++|++.....+ ...+ +++++++|+++|+++++|-+| .|+...+.. ..+. ...|+++
T Consensus 286 Dyd~lek~a~~~rPKLII~g~Sayp--r~~D----~~~i~eIAdevGA~LmvD~AH~aGLIa~g~~-~sP~--~~aDvvt 356 (586)
T PLN02271 286 DYDKLEEKALDFRPKILICGGSSYP--REWD----YARFRQIADKCGAVLMCDMAHISGLVAAKEC-VNPF--DYCDIVT 356 (586)
T ss_pred CHHHHHHHhhhcCCeEEEECchhcc--CcCC----HHHHHHHHHHcCCEEEEECcccccccccCcC-CCCC--cCCcEEE
Confidence 5555 4466889999999775443 1233 899999999999999999999 554333211 1011 1368887
Q ss_pred e--eccccCCccchheeEeChh--------------------hhhccCCCCCCCCCCCCH-HHHHHHHHHHHHHHh---c
Q psy6548 88 L--GKALSGGLYPISAVLADDE--------------------VMGTLVPGTHGSTYGGNP-LACKLAMTALDVILE---E 141 (242)
Q Consensus 88 ~--sK~~~~g~~~~g~~~~~~~--------------------~~~~l~~~~~~~~~~~~~-~~~~~a~a~l~~~~~---~ 141 (242)
+ .|+|.|+ .+ |.++.+++ +.+.+....+....+++. -.+++...+++.... .
T Consensus 357 ~TTHKtLrGP-rG-G~I~~r~~~~~~~~g~~gs~s~~~~~~d~~~kI~~aVfPglqgGphn~~IAalAvalkea~~~efk 434 (586)
T PLN02271 357 STTHKSLRGP-RG-GIIFYRKGPKLRKQGMLLSHGDDNSHYDFEEKINFAVFPSLQGGPHNNHIAALAIALKQVATPEYK 434 (586)
T ss_pred eCCcccCCCC-Cc-eEEEecccccccccCCccccccccccHHHHHHhhcccCCccccChhHHHHHHHHHHHHHHhChHHH
Confidence 4 4999876 44 77766643 223333221221112221 123332334565544 3
Q ss_pred cHHHHHHHHHHHHHHHHHhhcCCCCCCeEeeeceeEEEEecCCchhHHHHHHHHHHCCceeccC---------CCCEEEE
Q psy6548 142 NMIENAYKMGEIFRSELRSRLSPDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPI---------SNNIIRL 212 (242)
Q Consensus 142 ~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~---------~~~~lR~ 212 (242)
++.+++.++.+.|.+.| .+.+..+.... ...+++++++...+.+.....+.|.+.||.+... .++.||+
T Consensus 435 ~Ya~QVv~NAkaLA~~L-~~~G~~vv~gg-TdnHlvLvDl~~~g~~G~~ae~~Le~~~I~~Nkn~iP~d~~~~~psGiRi 512 (586)
T PLN02271 435 AYMQQVKKNAQALASAL-LRRKCRLVTGG-TDNHLLLWDLTTLGLTGKNYEKVCEMCHITLNKTAIFGDNGTISPGGVRI 512 (586)
T ss_pred HHHHHHHHHHHHHHHHH-HHCCCeEeeCC-CCcceeeecCcccCCCHHHHHHHHHHcCeEeccccCCCCCCCCCCCcccc
Confidence 46777888999999999 66553333222 2347888888664345677778888889998532 3567999
Q ss_pred ecc----CcCCHHHHHHHHHHHHHHHH
Q psy6548 213 SPA----LNITEQELREGLDIIINTIN 235 (242)
Q Consensus 213 ~~~----~~~t~e~i~~~~~~l~~~l~ 235 (242)
..+ ..+.++|+++..+.|.++++
T Consensus 513 GT~alT~rG~~e~d~~~iA~~i~~~~~ 539 (586)
T PLN02271 513 GTPAMTSRGCLESDFETIADFLLRAAQ 539 (586)
T ss_pred cCHHHHhcCCCcHHHHHHHHHHHHHHh
Confidence 643 45677899998888888876
No 332
>TIGR00474 selA seryl-tRNA(sec) selenium transferase. In bacteria, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes SelA. This model excludes homologs that appear to differ in function from Frankia alni, Helicobacter pylori, Methanococcus jannaschii and other archaea, and so on.
Probab=99.21 E-value=3.2e-09 Score=91.72 Aligned_cols=213 Identities=14% Similarity=0.127 Sum_probs=120.5
Q ss_pred CChhh-hcCCCCCEEEEEEcccccC--CCc--ccCCHHHHHHHHHHHHhhCCEEEEeccccccCccC------ccccccc
Q psy6548 10 KQVPA-KLKSNPNICAFMVEPIQGE--AGA--VVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTG------KLLAIHY 78 (242)
Q Consensus 10 ~d~~~-~~~~~~~~~~i~~e~~~~~--~G~--~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g------~~~~~~~ 78 (242)
+|+++ +...+++|++++++...|. .|. .++ +++|+++|++||+++++|....-++..+ .+...+.
T Consensus 199 ~~l~dle~aI~~~T~lv~~~h~sN~~~~G~~~~~d----l~~I~~la~~~g~~vivD~~sG~l~~~~~~gl~~~p~~~~~ 274 (454)
T TIGR00474 199 THLKDYEDAITENTALLLKVHTSNYRIVGFTEEVS----IAELVALGREHGLPVMEDLGSGSLVDLSRYGLPDEPTVQEV 274 (454)
T ss_pred CCHHHHHHhcCcCCEEEEEEccCcccccCCCCCCC----HHHHHHHHHHcCCeEEEECCCcccccchhccCCCCcccccH
Confidence 45666 5555678999888887665 353 444 9999999999999999996421121111 1111122
Q ss_pred CCCCCCEEEee--ccccCCccchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHhc--cH-----------
Q psy6548 79 EDVRPDIVILG--KALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEE--NM----------- 143 (242)
Q Consensus 79 ~~~~~~~~~~s--K~~~~g~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~~--~~----------- 143 (242)
.....|++++| |+++|+ . .|++++++++++.+++....-.+...-..+++..+++....++ .+
T Consensus 275 ~~~GaDiv~fSg~K~LgGp-~-~G~i~g~~~~i~~l~~~~l~r~lr~~k~~la~l~~~l~~~~~~~~a~~~~~~l~~l~~ 352 (454)
T TIGR00474 275 IAAGVDLVTFSGDKLLGGP-Q-AGIIVGKKELIERLKKNPLTRALRVDKLTLAALEATLRLYLDPEKALEKIPTLRMLTQ 352 (454)
T ss_pred hHcCCCEEEecCccccCCC-e-EEEEEECHHHHHhhhhchhHHHHhhChHHHHHHHHHHHHHhCchhhhhhchHHHHhcc
Confidence 23457899988 999876 3 7889999988887664211111111222233333334332111 01
Q ss_pred -HHHHHHHHHHHHHHHHhhcCCCCCCeE------------eee-ceeEEEEecCCchhHHHHHHHHHHCC--ceeccCCC
Q psy6548 144 -IENAYKMGEIFRSELRSRLSPDIVPVV------------RGK-GLLNAIVLDKSILEVYDVCIKMKDAG--LVTKPISN 207 (242)
Q Consensus 144 -~~~~~~~~~~l~~~l~~~l~~~~~~~~------------~~~-~~~~~~~~~~~~~~~~~~~~~l~~~g--i~~~~~~~ 207 (242)
.+..++++..+.+.|++.++..+.... +.. -+-+.+.+......+.++.++|++.. |+.+ ...
T Consensus 353 ~~~~~~~~A~~la~~L~~~~~~~~~~~~~~~~~~~ggg~~p~~~l~~~~v~~~~~~~~~~~l~~~lr~~~~~ii~r-~~~ 431 (454)
T TIGR00474 353 SPEELRARAERLAKRLKAALGPGFELEIVPGLSQVGGGSLPDERLPSYAVTLTPDGLSAEKLEARLRELPPPIIGR-IED 431 (454)
T ss_pred CHHHHHHHHHHHHHHHHhhccCCceEEEEEcCCcccCCCCcCCCCCeEEEEEecCCCCHHHHHHHHhcCCCCEEEE-EEC
Confidence 235666777777888332221110000 000 12233444332246788999998765 5554 346
Q ss_pred CEEEEeccCcCCHHHHHHHHHHH
Q psy6548 208 NIIRLSPALNITEQELREGLDII 230 (242)
Q Consensus 208 ~~lR~~~~~~~t~e~i~~~~~~l 230 (242)
+.+.+-+... .++|++.++++|
T Consensus 432 ~~~~ld~r~~-~~~~~~~~~~~~ 453 (454)
T TIGR00474 432 DRFLLDLRTL-LEDEEELLIEAL 453 (454)
T ss_pred CEEEEEeCcC-CHHHHHHHHHHh
Confidence 7677765443 667888887765
No 333
>PLN02880 tyrosine decarboxylase
Probab=99.20 E-value=5e-10 Score=97.94 Aligned_cols=212 Identities=14% Similarity=0.113 Sum_probs=126.4
Q ss_pred EEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCC-CCCEEE--eeccccCCccc
Q psy6548 22 ICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDV-RPDIVI--LGKALSGGLYP 98 (242)
Q Consensus 22 ~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~-~~~~~~--~sK~~~~g~~~ 98 (242)
+.+|+..-.-.++|.+-| +++|+++|++||+++.+|.+|.|+......+.....++ ..|.++ +.|++..+ ++
T Consensus 240 p~~vvataGTT~~GaiDp----l~eI~~i~~~~~iwlHVDaA~gg~~~~~~~~~~~l~gie~aDSit~d~HKwl~~P-~~ 314 (490)
T PLN02880 240 PFFLCATVGTTSSTAVDP----LLELGKIAKSNGMWFHVDAAYAGSACICPEYRHYIDGVEEADSFNMNAHKWFLTN-FD 314 (490)
T ss_pred cEEEEEecCCCcCcccCc----HHHHHHHHHHcCCEEEEehhhHHHHHhCHHHHHHhcCchhcCEEEECchhhcCCC-cc
Confidence 455555555566676666 99999999999999999999976421111111112243 467666 66999988 88
Q ss_pred hheeEeChh--hhhccCCC-------CC--CCC-----CC---CCHHHHHHHHHHHHHHHhccHHHHHH---HHHHHHHH
Q psy6548 99 ISAVLADDE--VMGTLVPG-------TH--GST-----YG---GNPLACKLAMTALDVILEENMIENAY---KMGEIFRS 156 (242)
Q Consensus 99 ~g~~~~~~~--~~~~l~~~-------~~--~~~-----~~---~~~~~~~~a~a~l~~~~~~~~~~~~~---~~~~~l~~ 156 (242)
+|.++..+. +.+.+... .. ..+ ++ +..+.....+.+++.+-.+++.+.++ ++++++.+
T Consensus 315 ~g~llvr~~~~l~~~~~~~~~Yl~~~~~~~~~~~~~~~~~i~~~rr~~alklw~~l~~~G~~g~~~~i~~~~~lA~~~~~ 394 (490)
T PLN02880 315 CSLLWVKDRNALIQSLSTNPEFLKNKASQANSVVDYKDWQIPLGRRFRSLKLWMVLRLYGVENLQSYIRNHIKLAKEFEQ 394 (490)
T ss_pred EEEEEEeCHHHHHHHHccCHHHhcCccccccCCCChhccCcCCCCcccHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHH
Confidence 998887632 21211110 00 000 00 01111223444566554556666666 88888888
Q ss_pred HHHhhcCCCCCCeEeeeceeEEEEecCCc-------hhHHHHHHHHHHCCceecc----CCCCEEEEeccCcCC-HHHHH
Q psy6548 157 ELRSRLSPDIVPVVRGKGLLNAIVLDKSI-------LEVYDVCIKMKDAGLVTKP----ISNNIIRLSPALNIT-EQELR 224 (242)
Q Consensus 157 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~l~~~gi~~~~----~~~~~lR~~~~~~~t-~e~i~ 224 (242)
.| ++.+. +....+....++.|.++... ....++.++|.+.|-+... .+..++|++++...| +++++
T Consensus 395 ~l-~~~~~-~el~~~~~~~iv~Fr~~~~~~~~~~~~~~n~~l~~~l~~~g~~~v~~t~~~g~~~lR~~~~n~~tt~~di~ 472 (490)
T PLN02880 395 LV-AQDSR-FEVVTPRIFSLVCFRLVPPKNNEDNGNKLNHDLLDAVNSSGKIFISHTVLSGKYVLRFAVGAPLTEERHVT 472 (490)
T ss_pred HH-hcCCC-EEEecCCceEEEEEEEeCCCCChhhHHHHHHHHHHHHHhCCCEEEEEEEECCEEEEEEEecCCCCCHHHHH
Confidence 88 54432 11111223446666665421 1224567777766655532 367799999866665 59999
Q ss_pred HHHHHHHHHHHHHhhh
Q psy6548 225 EGLDIIINTINTMAAK 240 (242)
Q Consensus 225 ~~~~~l~~~l~~~~~~ 240 (242)
.+++.|.+...++..+
T Consensus 473 ~~~~~i~~~~~~~~~~ 488 (490)
T PLN02880 473 AAWKVLQDEASKLLGK 488 (490)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999988887554
No 334
>PRK05613 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=99.17 E-value=7.4e-10 Score=95.46 Aligned_cols=209 Identities=13% Similarity=0.172 Sum_probs=119.3
Q ss_pred CChhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEEe
Q psy6548 10 KQVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVIL 88 (242)
Q Consensus 10 ~d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~ 88 (242)
+|++. +...++++++|++|.+.|+.|.+.+ +++|+++|+++|+++|+|.+++. +... .......|++++
T Consensus 143 ~d~e~l~~~l~~~tk~V~~e~~~Np~~~v~d----i~~I~~la~~~gi~livD~t~a~----g~~~--~p~~~GaDivv~ 212 (437)
T PRK05613 143 DDPESWQAAVQPNTKAFFGETFANPQADVLD----IPAVAEVAHRNQVPLIVDNTIAT----AALV--RPLELGADVVVA 212 (437)
T ss_pred CCHHHHHHhCCccCeEEEEECCCCCCCcccC----HHHHHHHHHHcCCeEEEECCCcc----cccc--ChHHhCCCEEEe
Confidence 46676 5555667999999998888886665 99999999999999999999852 1111 111234588875
Q ss_pred e--ccccC-Cccchhe-eEeChhhh-hc------c-----C------------------------CCCCCCCCCCCHHHH
Q psy6548 89 G--KALSG-GLYPISA-VLADDEVM-GT------L-----V------------------------PGTHGSTYGGNPLAC 128 (242)
Q Consensus 89 s--K~~~~-g~~~~g~-~~~~~~~~-~~------l-----~------------------------~~~~~~~~~~~~~~~ 128 (242)
| |.++| | -.+|. ++.+.+.. .. + . ..........+|..+
T Consensus 213 S~~K~l~G~g-d~~gG~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~p~~a 291 (437)
T PRK05613 213 SLTKFYTGNG-SGLGGVLIDGGKFDWTVERDGKPVFPYFVTPDPAYHGLKYADLGAPAFGLKARAGLLRDTGATLSPFNA 291 (437)
T ss_pred eccceecCCC-cceeEEEEecCcccccccccccccCCCCCCCccccccccccccchHHHHHHHHHHHHHhcCCCCCHHHH
Confidence 4 98885 3 33344 43332210 00 0 0 000011112344443
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhhcCC-------CCCCe----------EeeeceeEEEEecCCchhHHHH
Q psy6548 129 KLAMTALDVILEENMIENAYKMGEIFRSELRSRLSP-------DIVPV----------VRGKGLLNAIVLDKSILEVYDV 191 (242)
Q Consensus 129 ~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l~~~l~~-------~~~~~----------~~~~~~~~~~~~~~~~~~~~~~ 191 (242)
......++.+. -..++..+++..+.+.| +..+. +.... ..+.|.++.|++......+..|
T Consensus 292 ~l~~rgl~TL~--lR~~~~~~nA~~lA~~L-~~hp~V~~V~yPgl~~~p~~~~~~~~~~~g~gg~~sf~l~~~~~~~~~f 368 (437)
T PRK05613 292 WVTAQGLDTLS--LRLERHNENAIKVAEFL-NNHEKVAKVNFAGLKDSPWYATKEKLGLKYTGSVLSFDIKGGKDEAWAF 368 (437)
T ss_pred HHHHcccCcHH--HHHHHHHHHHHHHHHHH-HcCCCcceEECCCCCCCccHHHHHHhcCCCCceEEEEEecCCHHHHHHH
Confidence 33333333332 23466677888888888 65543 11111 1234678889986432445666
Q ss_pred HHHHHHCCceec----------cC-----------------CCCEEEEeccCcCCHHHHHHHHHHHHHHHHH
Q psy6548 192 CIKMKDAGLVTK----------PI-----------------SNNIIRLSPALNITEQELREGLDIIINTINT 236 (242)
Q Consensus 192 ~~~l~~~gi~~~----------~~-----------------~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~ 236 (242)
.+.|.--.+..+ |. .++.+|++ ...|+.+.+++.|+++++.
T Consensus 369 ~~~l~l~~~~~slG~~~sLv~~p~~~~h~~~~~~~~~~~Gi~~~liRls----vGlE~~~dLi~Dl~~Al~~ 436 (437)
T PRK05613 369 IDALKLHSNLANIGDVRSLVVHPATTTHSQSDEAGLARAGITQATVRLS----VGIEDIDDIIADLEGGFAA 436 (437)
T ss_pred HHhCCcceEccCCCCCchhhcCCCccCCccCCHHHHHhcCCCCCeEEEE----eccCCHHHHHHHHHHHHhh
Confidence 666642222111 10 24689999 4556777788888777764
No 335
>COG3844 Kynureninase [Amino acid transport and metabolism]
Probab=99.17 E-value=5.7e-09 Score=83.77 Aligned_cols=211 Identities=15% Similarity=0.220 Sum_probs=143.0
Q ss_pred hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEE--eeccc
Q psy6548 15 KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVI--LGKAL 92 (242)
Q Consensus 15 ~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~--~sK~~ 92 (242)
....+++++.+++.+|+--+|+... +.+|-.++++||++++.|=+|+ .|. ...+...-..|+.+ .-|-+
T Consensus 160 ~~~~~dd~AvV~L~~V~y~TGql~d----m~aiT~~AH~~galv~wDLAHs----aGa-vp~~Lh~~gaDfaigcsyKYL 230 (407)
T COG3844 160 EEAITDDVAVVLLSHVNYKTGQLLD----MRAITALAHQHGALVGWDLAHS----AGA-VPVDLHAAGADFAIGCSYKYL 230 (407)
T ss_pred HHhhccceEEEEeccccccccceee----HHHHHHHHHhcCceEEeehhcc----cCC-cceeecccCCCeeeeeeceec
Confidence 3445789999999999999998775 9999999999999999999996 111 12233333456555 44888
Q ss_pred cCCccc-hheeEeChhhhhccCCCCCC--------------------CCC---CCCHHHHHHHHHHHHHHHhc---cHHH
Q psy6548 93 SGGLYP-ISAVLADDEVMGTLVPGTHG--------------------STY---GGNPLACKLAMTALDVILEE---NMIE 145 (242)
Q Consensus 93 ~~g~~~-~g~~~~~~~~~~~l~~~~~~--------------------~~~---~~~~~~~~~a~a~l~~~~~~---~~~~ 145 (242)
.|| .+ .+++...++..+...+...+ .-| +.+.+++++...+|++..+- ++++
T Consensus 231 NgG-PGapa~l~v~~~h~e~~~~~lsgW~gha~pf~m~~~y~p~~ga~rf~~gt~~V~s~aal~~aLDifa~~~i~~lR~ 309 (407)
T COG3844 231 NGG-PGAPAGLFVAPRHRERSWPPLSGWWGHARPFAMEEVYAPGPGARRFLCGTQPVLSLAALEGALDIFADVDITELRK 309 (407)
T ss_pred cCC-CCCceeEEeccccccccccccccccCCCCcchhhhccCcCccccceeeCCcchhhhHHHhhhhhhhhhcCHHHHHH
Confidence 743 21 33444444443333221000 001 22345666666678877552 3555
Q ss_pred HHHHHHHHHHHHHHhhcCC-----CCCCeEeeeceeEEEEecCCchhHHHHHHHHHHCCceeccCCCCEEEEec-cCcCC
Q psy6548 146 NAYKMGEIFRSELRSRLSP-----DIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPISNNIIRLSP-ALNIT 219 (242)
Q Consensus 146 ~~~~~~~~l~~~l~~~l~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~lR~~~-~~~~t 219 (242)
+.-.+.+++.+.++...+. ..++.....|..+.+..+. ..++.++|.++||+.--..++.+||.+ +++.+
T Consensus 310 kSlaLTd~fieLvEa~~~~~~l~l~tPr~~~~rGsqvS~~hp~----~~~V~qaLi~rGVigD~R~P~vlRfgftPlY~~ 385 (407)
T COG3844 310 KSLALTDYFIELVEARCEYYGLTLVTPRAHEERGSQVSLYHPH----GYQVMQALIDRGVIGDFREPDVLRFGFTPLYVS 385 (407)
T ss_pred hhhHHHHHHHHHHHhccccCCcEEeccchhhhccceeeEecCc----HHHHHHHHHHcCccccccCCCeeeecCccceec
Confidence 5566777887777444442 1223334557777777665 588999999999999877799999987 78899
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q psy6548 220 EQELREGLDIIINTINTMAA 239 (242)
Q Consensus 220 ~e~i~~~~~~l~~~l~~~~~ 239 (242)
.+|+-.+++.|++++....-
T Consensus 386 ~~DVw~AV~~L~evL~t~a~ 405 (407)
T COG3844 386 FVDVWDAVDALEEVLDTLAW 405 (407)
T ss_pred hhHHHHHHHHHHHHHHhhcc
Confidence 99999999999999987653
No 336
>PRK15407 lipopolysaccharide biosynthesis protein RfbH; Provisional
Probab=99.17 E-value=6.6e-09 Score=89.86 Aligned_cols=209 Identities=16% Similarity=0.172 Sum_probs=125.6
Q ss_pred Chhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEEee
Q psy6548 11 QVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILG 89 (242)
Q Consensus 11 d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~s 89 (242)
|+++ +...++++++|+++++.+ ... .+++|.++|++||+++|+|++|+ +|..-.+. ..|-..|+.+||
T Consensus 148 d~~~le~~i~~~tkaVi~~~~~G---~p~----dl~~I~~la~~~gi~vIeDaa~a-~G~~~~g~---~~G~~gd~~~fS 216 (438)
T PRK15407 148 DASLLEAAVSPKTKAIMIAHTLG---NPF----DLAAVKAFCDKHNLWLIEDNCDA-LGSTYDGR---MTGTFGDIATLS 216 (438)
T ss_pred CHHHHHHHcCcCCeEEEEeCCCC---Chh----hHHHHHHHHHHCCCEEEEECccc-hhhhcCCe---eeeccCceEEEe
Confidence 4555 444566899999988543 222 38999999999999999999996 22211111 123334777765
Q ss_pred ----ccccCCccchheeEeC-hhhhhccCCC---------------------------------------CCCCCCCCCH
Q psy6548 90 ----KALSGGLYPISAVLAD-DEVMGTLVPG---------------------------------------THGSTYGGNP 125 (242)
Q Consensus 90 ----K~~~~g~~~~g~~~~~-~~~~~~l~~~---------------------------------------~~~~~~~~~~ 125 (242)
|.+.+| - .|+++.+ +++.+.++.. ..++++..+.
T Consensus 217 f~~~k~~~~g-e-GG~l~t~d~~l~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~n~rmse 294 (438)
T PRK15407 217 FYPAHHITMG-E-GGAVFTNDPLLKKIIESFRDWGRDCWCAPGCDNTCGKRFGWQLGELPFGYDHKYTYSHLGYNLKITD 294 (438)
T ss_pred CCCCCCcccc-C-ceEEEECCHHHHHHHHHHHHhCcccccccccccccccccccccccccccccccccccccccccCccH
Confidence 667755 3 4677765 4444322210 0233444556
Q ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhhcCCC--CCCeEe---eeceeEEEEecCC-chhHHHHHHHHHHCC
Q psy6548 126 LACKLAMTALDVILEENMIENAYKMGEIFRSELRSRLSPD--IVPVVR---GKGLLNAIVLDKS-ILEVYDVCIKMKDAG 199 (242)
Q Consensus 126 ~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~--~~~~~~---~~~~~~~~~~~~~-~~~~~~~~~~l~~~g 199 (242)
+.++.++..|+.+ ++..+..+++.+++.+.| +.++.. .....+ ...+.+.+.+... ..+.+++.++|.++|
T Consensus 295 l~AAig~~qL~~l--~~~~~~R~~~a~~y~~~L-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~Rd~l~~~L~~~G 371 (438)
T PRK15407 295 MQAAIGLAQLEKL--PGFIEARKANFAYLKEGL-ASLEDFLILPEATPNSDPSWFGFPITVKEDAGFTRVELVKYLEENK 371 (438)
T ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHh-ccCCCccccCcCCCCCeeEEEEEEEEECCcCCCCHHHHHHHHHHCC
Confidence 6666666666544 446777888888888888 665421 111111 1222333444331 135789999999999
Q ss_pred ceeccC-----C-----------------------CCEEEEeccCcCCHHHHHHHHHHHHHHHH
Q psy6548 200 LVTKPI-----S-----------------------NNIIRLSPALNITEQELREGLDIIINTIN 235 (242)
Q Consensus 200 i~~~~~-----~-----------------------~~~lR~~~~~~~t~e~i~~~~~~l~~~l~ 235 (242)
|-.++. . ...+-+=++...+++|+++.++.|++.++
T Consensus 372 I~~~~~~~~~~~~~p~~~~~~~~~~~~~P~ae~~~~~~l~LP~~~~l~~~~v~~i~~~i~~~~~ 435 (438)
T PRK15407 372 IGTRLLFAGNLTRQPYFKGVKYRVVGELTNTDRIMNDTFWIGVYPGLTEEMLDYVIEKIEEFFG 435 (438)
T ss_pred CCccccCCCccccChhhhhcCCCCCCCChHHHHHHhCeEEecCCCCCCHHHHHHHHHHHHHHHh
Confidence 966421 0 01233333456789999999999998774
No 337
>TIGR00461 gcvP glycine dehydrogenase (decarboxylating). This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment.
Probab=99.17 E-value=1.1e-08 Score=94.30 Aligned_cols=217 Identities=15% Similarity=0.148 Sum_probs=136.7
Q ss_pred Chhh--hcCCC--CCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccc-cCccCcccccccCCCCCCE
Q psy6548 11 QVPA--KLKSN--PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTG-LGRTGKLLAIHYEDVRPDI 85 (242)
Q Consensus 11 d~~~--~~~~~--~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~-~~~~g~~~~~~~~~~~~~~ 85 (242)
|+++ +.+.+ .++++|++..+.+ .|.+.++ +++|.++|+++|.++++|.++.. .... . ..-....|+
T Consensus 614 Dle~L~~~i~~~~~~taaV~iT~pst-~G~~e~~---I~eI~~iah~~G~~v~VDgAq~~al~~l----~-~Pg~~GaDi 684 (939)
T TIGR00461 614 DLVDLKNKAEQHGDELAAVMVTYPST-HGVFEPT---IQHACDIVHSFGGQVYLDGANMNAQVGL----T-SPGDLGADV 684 (939)
T ss_pred CHHHHHHHHhhcCCceEEEEEEeCCc-Cceeccc---HHHHHHHHHHcCCEEEEEecChhhCCCC----C-CccccCCCE
Confidence 4555 33433 5899999988877 4655543 99999999999999999999842 2111 1 111345799
Q ss_pred EEee--cccc-----CCccchheeEeChhhhhccCCCCCC----------------CCCCCCHHHHHHHHHHHHHHHhcc
Q psy6548 86 VILG--KALS-----GGLYPISAVLADDEVMGTLVPGTHG----------------STYGGNPLACKLAMTALDVILEEN 142 (242)
Q Consensus 86 ~~~s--K~~~-----~g~~~~g~~~~~~~~~~~l~~~~~~----------------~~~~~~~~~~~~a~a~l~~~~~~~ 142 (242)
++++ |+|+ || ..+|.+.+++++..++.....+ ....++...+..++..+..+-.++
T Consensus 685 ~~~s~HKtf~~P~G~GG-Pg~G~i~vr~~L~~~lPg~~v~~t~d~~greq~Iga~s~~~~g~a~~~l~a~~yi~~lG~~G 763 (939)
T TIGR00461 685 CHLNLHKTFCIPHGGGG-PGMGPIGVKSHLIPFLPKHDVVSMITGIGGSKSIGSVSAAPYGSASILPISWMYIKMMGNEG 763 (939)
T ss_pred EEecCCccCCCCCCCCC-CCeEEEEEhhhchhhcCCCcccccccCCCCccccccccccccCcHHHHHHHHHHHHHHCHHH
Confidence 8875 9888 66 6789998887765544322111 111233333344455556554444
Q ss_pred H---HHHHHHHHHHHHHHHHhhcCCCCCCeEe--eeceeEEEEecCC----chhHHHHHHHHHHCCceeccC---CCCEE
Q psy6548 143 M---IENAYKMGEIFRSELRSRLSPDIVPVVR--GKGLLNAIVLDKS----ILEVYDVCIKMKDAGLVTKPI---SNNII 210 (242)
Q Consensus 143 ~---~~~~~~~~~~l~~~l~~~l~~~~~~~~~--~~~~~~~~~~~~~----~~~~~~~~~~l~~~gi~~~~~---~~~~l 210 (242)
+ .+..-.+++++.++| +.... ...... ....-+.++++.. +....++.++|.+.|++.... ..+.+
T Consensus 764 L~~~a~~ailnAnYl~~rL-~~~~~-~l~~~~~~~~~hEfv~~~~~~~~~~g~~~~dIakrL~d~G~hapt~~~pv~g~l 841 (939)
T TIGR00461 764 LPKASVVAILNANYMATRL-KDHYP-ILFVGTLKHVAHECILDLRPLKAKTGIEAIDVAKRLQDYGFHAPTLSFPVPGTL 841 (939)
T ss_pred HHHHHHHHHHHHHHHHHHh-hccCc-ccccCCCCceeEEEEEeccchhhhcCCCHHHHHHHHHhCCeeccccCCccCCeE
Confidence 3 344556888999999 44221 111100 1122344555421 146789999999999986321 23467
Q ss_pred EEeccCcCCHHHHHHHHHHHHHHHHHHhh
Q psy6548 211 RLSPALNITEQELREGLDIIINTINTMAA 239 (242)
Q Consensus 211 R~~~~~~~t~e~i~~~~~~l~~~l~~~~~ 239 (242)
-+.|+-..+++|+|++++.+.++..++.+
T Consensus 842 miepTE~eskeelD~f~~al~~I~~e~~~ 870 (939)
T TIGR00461 842 MVEPTESESLEELDRFCDAMIAIKEEINA 870 (939)
T ss_pred EEEeeccCCHHHHHHHHHHHHHHHHHHHH
Confidence 77787889999999999999888777644
No 338
>COG0399 WecE Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=99.17 E-value=8.1e-09 Score=86.34 Aligned_cols=209 Identities=20% Similarity=0.281 Sum_probs=130.9
Q ss_pred hhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEEee-
Q psy6548 12 VPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILG- 89 (242)
Q Consensus 12 ~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~s- 89 (242)
.+. +...+++|++|+.-..++.. .+ +++|.++|++||++||.|.+|+ +|..-++ +..|-..|+.+||
T Consensus 112 ~~~ie~aIt~~tKAIipVhl~G~~----~d---m~~i~~la~~~~l~vIEDaAqa-~Ga~y~g---k~vGt~Gd~~~fSF 180 (374)
T COG0399 112 PDLIEAAITPRTKAIIPVHLAGQP----CD---MDAIMALAKRHGLPVIEDAAQA-HGATYKG---KKVGSFGDIGAFSF 180 (374)
T ss_pred HHHHHHHcccCCeEEEEehhccCC----CC---HHHHHHHHHHcCCeEEEEcchh-ccCeecC---cccccccceEEEEe
Confidence 444 66667779999988876643 22 9999999999999999999996 3322111 2224455777766
Q ss_pred ---ccccCCccchheeEeC-hhhhhccCCC----------------CCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHH
Q psy6548 90 ---KALSGGLYPISAVLAD-DEVMGTLVPG----------------THGSTYGGNPLACKLAMTALDVILEENMIENAYK 149 (242)
Q Consensus 90 ---K~~~~g~~~~g~~~~~-~~~~~~l~~~----------------~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~ 149 (242)
|.++.| - .|.++.+ +++++.++.. ..++++..+-+.++.+++-|+.+ +++.+..++
T Consensus 181 ~~~K~ittg-E-GGav~tnd~ela~k~~~lr~hG~~~~~~~~y~~~~~G~N~rm~~iqAAigl~QL~~l--~~~~~~R~~ 256 (374)
T COG0399 181 HATKNLTTG-E-GGAVVTNDEELAEKARSLRNHGLSRDAVFKYLHEELGYNYRLTEIQAAIGLAQLERL--DEINERRRE 256 (374)
T ss_pred cCCCCcccc-C-ceEEEeCCHHHHHHHHHHHHhCcCCCccccceeeecccccCHHHHHHHHHHHHHHHH--HHHHHHHHH
Confidence 999854 2 3455554 6677666532 12233333444544444444432 557778888
Q ss_pred HHHHHHHHHHhhcCC-CCCCeEeee---ceeEEEEecCCchhHHHHHHHHHHCCce----eccC----------------
Q psy6548 150 MGEIFRSELRSRLSP-DIVPVVRGK---GLLNAIVLDKSILEVYDVCIKMKDAGLV----TKPI---------------- 205 (242)
Q Consensus 150 ~~~~l~~~l~~~l~~-~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~gi~----~~~~---------------- 205 (242)
+.+.+.+.| +.++. ......... -.+..+.++..+...+.+...|.++||. ..|.
T Consensus 257 ~a~~Y~~~l-~~~~~~~~p~~~~~~~~~~~~~~i~~~~~~~~R~~l~~~L~~~gi~~~~~~~P~~~~~~~~~~~~~~~~~ 335 (374)
T COG0399 257 IAQIYAEAL-KGLPGITLPPEPDGAVHAWHLYTILVDEEGISRDALMESLKEAGVGAVVYFRPLHLQPAYRQLGYFPEGD 335 (374)
T ss_pred HHHHHHHHh-hcCCCccccCCCCCceeeeeeeEEEecCCCCCHHHHHHHHHhCCCCceEEeeccccchhhhcccccccCC
Confidence 888888888 76642 112222221 1223333443224568899999999555 3331
Q ss_pred -------CCCEEEEeccCcCCHHHHHHHHHHHHHHHHH
Q psy6548 206 -------SNNIIRLSPALNITEQELREGLDIIINTINT 236 (242)
Q Consensus 206 -------~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~ 236 (242)
....+++=++...+++++++.++.|++++.+
T Consensus 336 lp~ae~~~~r~l~LP~~p~l~~~~~~~V~~~l~~~~~~ 373 (374)
T COG0399 336 LPNAEDLSERILSLPLHPNLSEEDVDRVIEALKEVLGS 373 (374)
T ss_pred CchHHHHhhCeEEccCCCCCCHHHHHHHHHHHHHHhcc
Confidence 1245777667788999999999999988754
No 339
>TIGR01365 serC_2 phosphoserine aminotransferase, Methanosarcina type. This model represents a variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in a small number of distantly related species, including Caulobacter crescentus, Mesorhizobium loti, and the archaeon Methanosarcina barkeri.
Probab=99.16 E-value=3.1e-09 Score=89.65 Aligned_cols=213 Identities=13% Similarity=0.085 Sum_probs=132.4
Q ss_pred cccccCCCChhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHh-hCCEEEEeccccccCccCcccccccCC
Q psy6548 3 LQFPVKSKQVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQ-YNVLFIADEVQTGLGRTGKLLAIHYED 80 (242)
Q Consensus 3 ~~~~~~~~d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~-~~~~li~De~~~~~~~~g~~~~~~~~~ 80 (242)
.++.++|+..-+ +.++..+ .+++...-.++|...| +++ ++++ +++++|+|.+-+ +| +.++.++ +
T Consensus 110 ~~l~~~~g~~~~~~~ve~~~--~v~~vhnETSTGv~np----v~~---i~~~~~~~lliVDavSs-~g--~~~l~~d--~ 175 (374)
T TIGR01365 110 RVLEAEYGKLPDLKKVDFKN--DVVFTWNGTTSGVRVP----NGD---FIPADREGLTICDATSA-AF--AQDLDYH--K 175 (374)
T ss_pred EEEcCCCCCCCCHHHcCCCC--CEEEecCCCchheecc----ccc---cccccCCCcEEEEccch-hc--CCCCChh--H
Confidence 355678876554 4333221 2455555566675555 333 3333 589999998765 32 2233333 2
Q ss_pred CCCCEEEee--ccccCCccchheeEeChhhhhccCCC----------------------CCCCCCCC-CHHHHHHHHHHH
Q psy6548 81 VRPDIVILG--KALSGGLYPISAVLADDEVMGTLVPG----------------------THGSTYGG-NPLACKLAMTAL 135 (242)
Q Consensus 81 ~~~~~~~~s--K~~~~g~~~~g~~~~~~~~~~~l~~~----------------------~~~~~~~~-~~~~~~~a~a~l 135 (242)
.|+++.| |++++. -++++++.+++.+++.... ..+++... +...+.++..++
T Consensus 176 --iDv~~tgsQK~L~~p-pGls~v~vs~~Al~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~t~~TP~v~~l~a~~~~l 252 (374)
T TIGR01365 176 --LDVVTFSWQKVLGGE-GAHGMLILSPRAVARLESYTPAWPLPKIFRLTKGGKLNKKIFEGSTINTPSMLCVEDWLDAL 252 (374)
T ss_pred --CcEEEEechhccCCC-CceEEEEECHHHHHHHhhcCCCCCChhhhccccccchhhhhhcCCCCCChHHHHHHHHHHHH
Confidence 6777754 999955 5688899998887665421 01222222 233555555666
Q ss_pred HHHHhc----cHHHHHHHHHHHHHHHHHhhcC-CCCCCe-Ee-eeceeEEEEecCCch-----h-----HHHHHHHHHHC
Q psy6548 136 DVILEE----NMIENAYKMGEIFRSELRSRLS-PDIVPV-VR-GKGLLNAIVLDKSIL-----E-----VYDVCIKMKDA 198 (242)
Q Consensus 136 ~~~~~~----~~~~~~~~~~~~l~~~l~~~l~-~~~~~~-~~-~~~~~~~~~~~~~~~-----~-----~~~~~~~l~~~ 198 (242)
+.++++ +..++.+++++.+++.+ +.++ ...... .. ..-....+.++.+.. + ..++.+.|.++
T Consensus 253 ~~i~~egGle~~~~Rh~~~a~~l~~~l-~~lg~l~~~~~~~~~rS~tvt~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 331 (374)
T TIGR01365 253 KWAESIGGLKPLIARADDNLAVLEAFV-AKNNWIHFLAETPEIRSNTSVCLKVVDPAIDALDEDAQADFAKELISTLEKE 331 (374)
T ss_pred HHHHHccCHHHHHHHHHHHHHHHHHHH-HHCCCcccCCCChhhcCCCeEEEEeCCccccccccchhhHHHHHHHHHHHHC
Confidence 655543 35677888999999999 7777 322221 11 222334455533311 3 68899999999
Q ss_pred CceeccC----CCCEEEEeccCcCCHHHHHHHHHHHHHH
Q psy6548 199 GLVTKPI----SNNIIRLSPALNITEQELREGLDIIINT 233 (242)
Q Consensus 199 gi~~~~~----~~~~lR~~~~~~~t~e~i~~~~~~l~~~ 233 (242)
|+.+.++ .++.+||..-...+.+|++.+++.|+=+
T Consensus 332 gi~i~~G~~~~~~~~fRIg~~G~i~~~di~~l~~~l~~~ 370 (374)
T TIGR01365 332 GVAYDIGSYRDAPSGLRIWCGATVEKSDLECLCPWLDWA 370 (374)
T ss_pred CEEEeccccccCCCceEEecCCcCCHHHHHHHHHHHHHH
Confidence 9999865 2478999887788999999999998644
No 340
>PRK06434 cystathionine gamma-lyase; Validated
Probab=99.16 E-value=7.7e-10 Score=93.81 Aligned_cols=196 Identities=21% Similarity=0.270 Sum_probs=118.1
Q ss_pred CCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEEee--ccccCCc
Q psy6548 19 NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILG--KALSGGL 96 (242)
Q Consensus 19 ~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~s--K~~~~g~ 96 (242)
.+++++|++|.+.|+++.+.+ +++|+++|++++ +++|.++.. +......+...|++++| |.++|.
T Consensus 146 ~~~tklv~~e~~snpt~~v~D----i~~I~~la~~~~--lvVD~t~~s------~~~~~pl~~gaDivv~S~tK~i~G~- 212 (384)
T PRK06434 146 PSNYDLIYAESITNPTLKVPD----IKNVSSFCHEND--VIVDATFAS------PYNQNPLDLGADVVIHSATKYISGH- 212 (384)
T ss_pred CCCeeEEEEEcCCCCCceeec----HHHHHHHHHHcC--eEEECCCCC------cccCCchhcCCCEEEeecccccCCC-
Confidence 447999999999999886654 999999999998 466998731 11112224567888865 999852
Q ss_pred cc--hheeEe-ChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhhcCCC---CCC--
Q psy6548 97 YP--ISAVLA-DDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELRSRLSPD---IVP-- 168 (242)
Q Consensus 97 ~~--~g~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~---~~~-- 168 (242)
-. .|.++. ++++.+.++..........+++.++.++..++.+ +...++.++++..+.+.| +..+.. ...
T Consensus 213 ~d~~gG~vv~~~~~~~~~~~~~~~~~G~~~~~~~A~l~~~gL~tL--~~R~~r~~~~a~~~a~~L-~~~p~v~~V~yPgl 289 (384)
T PRK06434 213 SDVVMGVAGTNNKSIFNNLVERRKTLGSNPDPIQAYLALRGLKTL--GLRMEKHNKNGMELARFL-RDSKKISNVYYPDT 289 (384)
T ss_pred CCceEEEEecCcHHHHHHHHHHHHhcCCCCCHHHHHHHHhCCCcH--HHHHHHHHHHHHHHHHHH-HcCCCccEEECCCh
Confidence 21 444545 4556555542211112233555444444334433 335677788888899999 665531 000
Q ss_pred -----eEeeeceeEEEEecCCchhHHHHHHHHHHCCceec----------cC-----------------CCCEEEEeccC
Q psy6548 169 -----VVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTK----------PI-----------------SNNIIRLSPAL 216 (242)
Q Consensus 169 -----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~----------~~-----------------~~~~lR~~~~~ 216 (242)
...+.|.++.|++... ..+..|.+.|.--.+.++ |. ..+.+|++
T Consensus 290 ~~~~~~~~g~g~~~sf~l~~~-~~~~~f~~~l~l~~~~~slG~~~sl~~~p~~~~h~~~~~e~~~~~gi~~~liRls--- 365 (384)
T PRK06434 290 EIGKKVLRGFGGMLSFELRSM-EDVHKFIRNLEIPMVAASLGGVESLITLPVETSHSSLSPEERERLGISDNLVRFS--- 365 (384)
T ss_pred HHHHHhcCCCCceEEEEECCH-HHHHHHHHhCCcceEccCCCCCCeeeECCCccccccCCHHHHHhcCCCcCeEEEE---
Confidence 1134678899998753 556667666642111111 10 24689999
Q ss_pred cCCHHHHHHHHHHHHHHHH
Q psy6548 217 NITEQELREGLDIIINTIN 235 (242)
Q Consensus 217 ~~t~e~i~~~~~~l~~~l~ 235 (242)
...|+.+.+++.|++++.
T Consensus 366 -vGlEd~~dLi~dl~~Al~ 383 (384)
T PRK06434 366 -IGIEDIDDLIKDIENALS 383 (384)
T ss_pred -eCcCCHHHHHHHHHHHhc
Confidence 344577777777777764
No 341
>PF01041 DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransferase family; InterPro: IPR000653 This entry represents a family that are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions. The family includes StsA P72454 from SWISSPROT, StsC P77952 from SWISSPROT and StsS []. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase 2.6.1.50 from EC, which catalyses the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin [].; PDB: 2FNI_A 2FNU_A 2FN6_A 2PO3_A 3UWC_A 1O61_B 1O62_B 1O69_B 1B9I_A 1B9H_A ....
Probab=99.09 E-value=5.1e-09 Score=88.63 Aligned_cols=201 Identities=17% Similarity=0.222 Sum_probs=122.4
Q ss_pred hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEEee----c
Q psy6548 15 KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILG----K 90 (242)
Q Consensus 15 ~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~s----K 90 (242)
+...+.++++|++.+.++... .+++|.++|++||++||.|.+|+ +|..-.+ ...|-..|+.+|| |
T Consensus 107 ~~~i~~~t~ai~~~h~~G~~~-------d~~~i~~~~~~~~i~lIeD~a~a-~g~~~~g---~~~G~~gd~~~fSf~~~K 175 (363)
T PF01041_consen 107 EKAITPKTKAILVVHLFGNPA-------DMDAIRAIARKHGIPLIEDAAQA-FGARYKG---RPVGSFGDIAIFSFHPTK 175 (363)
T ss_dssp HHHHHTTEEEEEEE-GGGB----------HHHHHHHHHHTT-EEEEE-TTT-TT-EETT---EETTSSSSEEEEESSTTS
T ss_pred HHHhccCccEEEEecCCCCcc-------cHHHHHHHHHHcCCcEEEccccc-cCceeCC---EeccCCCCceEecCCCCC
Confidence 444567889999988766432 29999999999999999999996 3221111 2234456888876 9
Q ss_pred cccCCccchheeEeC-hhhhhccCCC---C--------------CCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHH
Q psy6548 91 ALSGGLYPISAVLAD-DEVMGTLVPG---T--------------HGSTYGGNPLACKLAMTALDVILEENMIENAYKMGE 152 (242)
Q Consensus 91 ~~~~g~~~~g~~~~~-~~~~~~l~~~---~--------------~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~ 152 (242)
.+.+| - .|+++.+ +++.++++.. . .+..+..+.+..+.+++.|+.+ ++..+..+++.+
T Consensus 176 ~i~~g-e-GG~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~n~rm~~~~AAigl~QL~~L--~~~~~~R~~~a~ 251 (363)
T PF01041_consen 176 IITTG-E-GGAVVTNDPELAERARALRNHGRSRDAFRRYRHELPPGYNFRMSELQAAIGLAQLKRL--DEIIARRRENAQ 251 (363)
T ss_dssp SS-SS-S--EEEEESTHHHHHHHHHHTBTTEETSECSTTEESSSS--B-B-BHHHHHHHHHHHHTH--HHHHHHHHHHHH
T ss_pred CCcCC-C-CeeEEecHHHHHHHhhhhhccCcCccccccccccccCCcccccHHHHHHHHHHHHHHh--hhhHHHHHHHHH
Confidence 88754 2 4666665 4555554321 0 2334455666666566555533 446677888888
Q ss_pred HHHHHHHhhcCCC----CCCeEe-eeceeEEEEecCCc-hhHHHHHHHHHHCCceeccCC--------------------
Q psy6548 153 IFRSELRSRLSPD----IVPVVR-GKGLLNAIVLDKSI-LEVYDVCIKMKDAGLVTKPIS-------------------- 206 (242)
Q Consensus 153 ~l~~~l~~~l~~~----~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~l~~~gi~~~~~~-------------------- 206 (242)
.+++.| +.++.. ...... ...+.+.+.+++.. .+.+++.+.|.++||.+.+..
T Consensus 252 ~y~~~L-~~~~~~~~~~~~~~~~~~~~~~f~i~~~~~~~~~rd~l~~~L~~~GI~~~~~~~~pl~~~~~~~~~~~~~~~~ 330 (363)
T PF01041_consen 252 RYREAL-AGIPGIKPPPIPDGAERSSYYRFPIRLPDEALADRDELVEALRARGIETRPHYPKPLHRQPVYRSYPYYAPGD 330 (363)
T ss_dssp HHHHHH-TTGTTEEEEGCGTTTEEBCESSEEEEETCCGCSTHHHHHHHHHHTTBEEBCSTSSCGGGSGGGTTGEEEETSS
T ss_pred HHHHHH-hcCCCcccccccccccccccccccccccccccchHHHHHHHHHHCCCcccccccCchhhhHHHHhcCccccCC
Confidence 888988 666531 111111 23334455555431 257889999999999996431
Q ss_pred --------CCEEEEeccCcCCHHHHHHHHHHHH
Q psy6548 207 --------NNIIRLSPALNITEQELREGLDIII 231 (242)
Q Consensus 207 --------~~~lR~~~~~~~t~e~i~~~~~~l~ 231 (242)
...+.+-.+...+++++++.++.|+
T Consensus 331 ~P~ae~l~~r~l~LP~~~~lt~edv~~I~~~ir 363 (363)
T PF01041_consen 331 LPNAERLSQRLLSLPIHPRLTEEDVDYIAEAIR 363 (363)
T ss_dssp SHHHHHHHHHEEEEEHSTTSCHHHHHHHHHHHH
T ss_pred CHHHHHHHhCeEECcCCCCCCHHHHHHHhhccC
Confidence 1256666677889999999988774
No 342
>PF00464 SHMT: Serine hydroxymethyltransferase; InterPro: IPR001085 Synonym(s): Serine hydroxymethyltransferase, Serine aldolase, Threonine aldolase Serine hydroxymethyltransferase (SHMT) is a pyridoxal phosphate (PLP) dependent enzyme and belongs to the aspartate aminotransferase superfamily (fold type I) []. The pyridoxal-P group is attached to a lysine residue around which the sequence is highly conserved in all forms of the enzyme []. The enzyme carries out interconversion of serine and glycine using PLP as the cofactor. SHMT catalyses the transfer of a hydroxymethyl group from N5, N10- methylene tetrahydrofolate to glycine, resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers and the mammalian enzyme forms a homotetramer [, ]. PLP dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalysed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), D-amino acid superfamily (fold type IV) and glycogen phophorylase family (fold type V) [, ]. In vertebrates, glycine hydroxymethyltransferase exists in a cytoplasmic and a mitochondrial form whereas only one form is found in prokaryotes.; GO: 0004372 glycine hydroxymethyltransferase activity, 0006544 glycine metabolic process, 0006563 L-serine metabolic process; PDB: 3GBX_B 3H7F_A 1YJS_A 2VMW_A 2W7H_A 2W7E_A 2VMY_B 2W7L_A 2VMZ_A 2VMS_A ....
Probab=99.09 E-value=8.9e-10 Score=92.88 Aligned_cols=201 Identities=16% Similarity=0.166 Sum_probs=119.0
Q ss_pred hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccc-cccCccCcccccccCCCCCCEEEee--cc
Q psy6548 15 KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQ-TGLGRTGKLLAIHYEDVRPDIVILG--KA 91 (242)
Q Consensus 15 ~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~-~~~~~~g~~~~~~~~~~~~~~~~~s--K~ 91 (242)
+.+...++++|++-....+ ... .+++++++|++.|++|++|-+| +|+...|. +.-+ ++. .|+++.| |+
T Consensus 163 ~~a~~~kPklIi~G~S~y~---~~~---d~~~~reIad~vga~l~~D~sH~~GLIa~g~-~~~P-~~~-ADvvt~sThKt 233 (399)
T PF00464_consen 163 KLAKEHKPKLIICGASSYP---RPI---DFKRFREIADEVGAYLMADISHIAGLIAGGL-FPNP-FPY-ADVVTGSTHKT 233 (399)
T ss_dssp HHHHHH--SEEEEE-SSTS---S------HHHHHHHHHHTT-EEEEE-TTTHHHHHTTS-S--G-CCT-SSEEEEESSGG
T ss_pred HHHhhcCCCEEEECchhcc---Ccc---CHHHHHHHHHhcCcEEEecccccccceehhe-ecCc-ccc-ceEEEeecccc
Confidence 4455678888888774322 222 2899999999999999999999 66644432 1111 122 6888866 99
Q ss_pred ccCCccchheeEeC--------------hhhhhccCCCCCCCCCCCCHHHHHHHH-HHHHHHHh---ccHHHHHHHHHHH
Q psy6548 92 LSGGLYPISAVLAD--------------DEVMGTLVPGTHGSTYGGNPLACKLAM-TALDVILE---ENMIENAYKMGEI 153 (242)
Q Consensus 92 ~~~g~~~~g~~~~~--------------~~~~~~l~~~~~~~~~~~~~~~~~~a~-a~l~~~~~---~~~~~~~~~~~~~ 153 (242)
|.|+ +.|.++.+ +++.+.+......+..+++-.-..+++ .++....+ .++.+++.++.+.
T Consensus 234 l~GP--rggiI~~~~~~~~~~~~~~~~~~~l~~~I~~avfP~~qg~~h~~~iaalAval~ea~~~~fk~Ya~qVv~NAk~ 311 (399)
T PF00464_consen 234 LRGP--RGGIILTNKGSKNVDKKGKEIDEELAEKIDSAVFPGLQGGPHMHRIAALAVALKEALSPEFKEYAKQVVKNAKA 311 (399)
T ss_dssp G-SS--S-EEEEES-SEEEE-TTS-EEEHHHHHHHHHHHTTTT-SS--HHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHH
T ss_pred cccc--CceEEEEcCCccccCCcccccHHHHHHHhccccCCCcccCcchhHHHHHHHHHhcccCHHHHHHHHHHHHHHHH
Confidence 9985 67888888 677777765433333333323222222 23443322 3577888899999
Q ss_pred HHHHHHhhcCCCCCCeEeeeceeEEEEecCCchhHHHHHHHHHHCCceecc----C-----CCCEEEEecc----CcCCH
Q psy6548 154 FRSELRSRLSPDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKP----I-----SNNIIRLSPA----LNITE 220 (242)
Q Consensus 154 l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~----~-----~~~~lR~~~~----~~~t~ 220 (242)
|.+.| ++.+-.+... ....+++++++...+.+..+..+.|.+.||.+.. . ....||+..+ ....+
T Consensus 312 La~~L-~~~G~~v~~g-gTd~H~vlvd~~~~~~~g~~a~~~Le~~gI~vnkn~iP~d~~~~~~sGlRlGT~~lT~rG~~e 389 (399)
T PF00464_consen 312 LAEAL-QERGFKVVTG-GTDNHQVLVDLRSFGIDGKEAEKALEEAGIIVNKNTIPGDRSPFVPSGLRLGTPALTRRGMKE 389 (399)
T ss_dssp HHHHH-HHTT-EEGGG-S-SSSEEEEEGGGGTS-HHHHHHHHHHTTEE-EEE--TTTSTTTT-SEEEEESHHHHHTT--H
T ss_pred HHHHH-hhCCcEEEEC-CCCCCeEEEEecccccchHHHHHHHHhcCeeecccccCCCCCCCCCCEEEECCHHHHhCCCCH
Confidence 99999 6666433322 2345788999876435678888899999999952 2 2468999743 34566
Q ss_pred HHHHHHHH
Q psy6548 221 QELREGLD 228 (242)
Q Consensus 221 e~i~~~~~ 228 (242)
+|++++.+
T Consensus 390 ~dm~~iA~ 397 (399)
T PF00464_consen 390 EDMKEIAE 397 (399)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 66666544
No 343
>PLN03032 serine decarboxylase; Provisional
Probab=99.08 E-value=2.3e-08 Score=84.46 Aligned_cols=191 Identities=13% Similarity=0.043 Sum_probs=123.0
Q ss_pred CEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhC-----CEEEEecccccc-CccC---cccccccCCCCCCEEEee--
Q psy6548 21 NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYN-----VLFIADEVQTGL-GRTG---KLLAIHYEDVRPDIVILG-- 89 (242)
Q Consensus 21 ~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~-----~~li~De~~~~~-~~~g---~~~~~~~~~~~~~~~~~s-- 89 (242)
++.++++.-..+++|.+-| +++|+++|++|| +++.+|.++.++ .+.- ..+.+ ....|.++++
T Consensus 161 ~~~lvv~tagtt~tG~idp----i~eI~~i~~~~g~~~~~~~lHvDaA~gg~~~p~~~~~~~~~~---~~~vDSis~s~H 233 (374)
T PLN03032 161 KPAILNVNIGTTVKGAVDD----LDRILRILKELGYTEDRFYIHCDGALFGLMMPFVSRAPEVTF---RKPIGSVSVSGH 233 (374)
T ss_pred CCEEEEEEecCcCCccCCC----HHHHHHHHHHhCCCCCCeeEEEEccchhhhhhccCCCcccCC---CcCCcEEEECcc
Confidence 6788888888889998766 999999999997 489999999653 1110 01111 1236767754
Q ss_pred ccccCCccchheeEeChhhhhccCCCC-----CCCCCCC--CHHHHHHHHHHHHHHHhcc---HHHHHHHHHHHHHHHHH
Q psy6548 90 KALSGGLYPISAVLADDEVMGTLVPGT-----HGSTYGG--NPLACKLAMTALDVILEEN---MIENAYKMGEIFRSELR 159 (242)
Q Consensus 90 K~~~~g~~~~g~~~~~~~~~~~l~~~~-----~~~~~~~--~~~~~~~a~a~l~~~~~~~---~~~~~~~~~~~l~~~l~ 159 (242)
|.++.+ .++|.++..+...+.+.... .-.+..+ +....+..+++++.+-.++ ..++..++++++.+.|
T Consensus 234 K~~g~P-~g~G~ll~r~~~~~~~~~~~~Yl~~~d~ti~gSR~g~~~l~~w~~l~~~G~~g~~~~~~~~~~~a~~l~~~l- 311 (374)
T PLN03032 234 KFLGCP-MPCGVALTRKKHVKALSQNVEYLNSRDATIMGSRNGHAPLYLWYTLRRKGYRGIKRDVQHCMRNAHYLKDRL- 311 (374)
T ss_pred cccCCC-cCeEEEEEEchhhHhhccCCcccCCCCCcccCCCchHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHH-
Confidence 988867 78999988876665443210 1122222 3345566677777665443 5667777888888888
Q ss_pred hhcCCCCCCeEeeeceeEEEEecCCchhHHHHHHHHHHCCceeccCCCCEEEEeccCcCCHHHHHHHHHHHHH
Q psy6548 160 SRLSPDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIIN 232 (242)
Q Consensus 160 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~lR~~~~~~~t~e~i~~~~~~l~~ 232 (242)
++.+ ......+....+.|.-+.. +. ..+|..+.+. ++.+|++....++.+.++++++.|++
T Consensus 312 ~~~~--~~~~~~p~~~~V~f~~~~~----~~-----~~~~w~l~~~-~~~~hi~vm~~~~~~~id~fi~dl~~ 372 (374)
T PLN03032 312 TEAG--LTCRLNELSSTVVFERPMD----EA-----FIKKWQLACE-GDIAHVVVMPNVTVEKLDEFVEELVE 372 (374)
T ss_pred HhCC--CcEEECCCceEEEEcCCCc----Hh-----Hhheeeeccc-CCEEEEEECCCCCHHHHHHHHHHHhc
Confidence 5543 2222233344454443332 11 2367777764 46899987777888999999988865
No 344
>KOG0053|consensus
Probab=99.04 E-value=7.4e-09 Score=86.41 Aligned_cols=212 Identities=14% Similarity=0.119 Sum_probs=123.1
Q ss_pred CCCChhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEE
Q psy6548 8 KSKQVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIV 86 (242)
Q Consensus 8 ~~~d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~ 86 (242)
+-+|++. ....+.++.+|++|++-||...++. +++++++|+++|+++++|++..+. ...+.+....|++
T Consensus 148 d~~~~~~~~~~i~~~t~~V~~ESPsNPll~v~D----I~~l~~la~~~g~~vvVDnTf~~p------~~~~pL~lGADIV 217 (409)
T KOG0053|consen 148 DVDDLKKILKAIKENTKAVFLESPSNPLLKVPD----IEKLARLAHKYGFLVVVDNTFGSP------YNQDPLPLGADIV 217 (409)
T ss_pred chhhHHHHHHhhccCceEEEEECCCCCcccccc----HHHHHHHHhhCCCEEEEeCCcCcc------cccChhhcCCCEE
Confidence 3344555 4455569999999999999985553 999999999999999999987532 2233445568998
Q ss_pred E--eeccccCCc-cchheeEeC-hhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhhc
Q psy6548 87 I--LGKALSGGL-YPISAVLAD-DEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELRSRL 162 (242)
Q Consensus 87 ~--~sK~~~~g~-~~~g~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l~~~l 162 (242)
+ .+|.++|.- .=.|.++.+ +++...+......-.+..+|..+.-....++.+.- ..++..+++..+...| ...
T Consensus 218 ~hSaTKyi~Ghsdvi~G~iv~n~~~~~~~l~~~~~~lg~~~~p~~~~ll~Rglktl~l--Ri~~~~ena~~~A~~L-e~~ 294 (409)
T KOG0053|consen 218 VHSATKYIGGHSDVIGGSVVLNSEELASRLKFLQEDLGWCEDPFDLFLLSRGLKTLHL--RINKHSENALKIALLL-EAH 294 (409)
T ss_pred EEeeeeeecCCcceeeeEEecCcHHHHHHHHHHHHHhcCCCCHHHHHHHhcCcchhhh--hHHHHHHHHHHHHHHh-hhC
Confidence 8 679999531 113445564 66666665432222234555554433333332211 2334444555555666 333
Q ss_pred CC-------CCCCe---------E-eeeceeEEEEecCCchhHHHHHHHHHH--CCceecc-------------------
Q psy6548 163 SP-------DIVPV---------V-RGKGLLNAIVLDKSILEVYDVCIKMKD--AGLVTKP------------------- 204 (242)
Q Consensus 163 ~~-------~~~~~---------~-~~~~~~~~~~~~~~~~~~~~~~~~l~~--~gi~~~~------------------- 204 (242)
+. +.... . .+.|.+..+..... ..+.+|++.|+= .+.-+..
T Consensus 295 ~~v~kv~YPgL~Shp~h~~~~~~~~g~~G~l~~~~~~~~-~~a~kf~~~LK~~~~a~SlG~~eSL~~~p~~mth~~~~e~ 373 (409)
T KOG0053|consen 295 PKVKKVYYPGLPSHPNHELAKRQKKGGYGGLSSVIFGNE-EHAKKFYDALKLFTKAPSLGGNESLAEPPAIMTHASELEE 373 (409)
T ss_pred CceeEEEcCCCCCCccHHHHHhhhcCCcceEEEEEcCCH-HHHHHHHHhhhhhhcccCcCccchhhcchhhhccCCCHHH
Confidence 32 11111 1 11233333333333 566667776642 2222211
Q ss_pred -----CCCCEEEEeccCcCCHHHHHHHHHHHHHHHHHH
Q psy6548 205 -----ISNNIIRLSPALNITEQELREGLDIIINTINTM 237 (242)
Q Consensus 205 -----~~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~ 237 (242)
..++.+|+|+ .-|+++.+++.|.++++.+
T Consensus 374 ~~~~Gi~~~LVRvSV----GiEd~~dL~~d~~~Al~~~ 407 (409)
T KOG0053|consen 374 REKFGIDPNLVRVSV----GIEDIEDLIKDFQQALEKA 407 (409)
T ss_pred HHhcCCCCCcEEEEe----ccCCHHHHHHHHHHHHHhh
Confidence 1467899993 3578888888888887764
No 345
>PLN02590 probable tyrosine decarboxylase
Probab=99.02 E-value=3.2e-08 Score=87.11 Aligned_cols=212 Identities=13% Similarity=0.083 Sum_probs=124.7
Q ss_pred EEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCC-CCCEEE--eeccccCCccc
Q psy6548 22 ICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDV-RPDIVI--LGKALSGGLYP 98 (242)
Q Consensus 22 ~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~-~~~~~~--~sK~~~~g~~~ 98 (242)
+.+|+..---.++|.+=| +++|+++|++||+++.+|.+|.|+............|+ ..|-++ ..|++..+ +.
T Consensus 288 P~~VvaTaGTT~tGaiDp----l~~Ia~i~~~~g~WlHVDaA~GG~al~~~~~r~~~~Gie~ADSit~D~HK~l~~p-~~ 362 (539)
T PLN02590 288 PFFICATVGTTSSAAVDP----LVPLGNIAKKYGIWLHVDAAYAGNACICPEYRKFIDGIENADSFNMNAHKWLFAN-QT 362 (539)
T ss_pred cEEEEEEeCCCCCcccCC----HHHHHHHHHHhCCeEEEecchhhhhhcChhhHHHhcCCccCCEEEECchhhcCcC-cC
Confidence 444444444555564444 99999999999999999999987532211111011233 346555 66999977 78
Q ss_pred hheeEeChh--hhh-------ccCCCC-------CCC--CCCC-CHHHHHHHHHHHHHHHhcc---HHHHHHHHHHHHHH
Q psy6548 99 ISAVLADDE--VMG-------TLVPGT-------HGS--TYGG-NPLACKLAMTALDVILEEN---MIENAYKMGEIFRS 156 (242)
Q Consensus 99 ~g~~~~~~~--~~~-------~l~~~~-------~~~--~~~~-~~~~~~~a~a~l~~~~~~~---~~~~~~~~~~~l~~ 156 (242)
+|.++...+ +.. ++.... ... +... -.+.....+.+++.+-.++ ++.+.-++++++.+
T Consensus 363 cg~llvr~~~~l~~a~~~~~~YL~~~~~~~~~~~d~~d~~i~lsRr~raLklW~~lr~~G~~G~~~~i~~~~~lA~~~~~ 442 (539)
T PLN02590 363 CSPLWVKDRYSLIDALKTNPEYLEFKVSKKDTVVNYKDWQISLSRRFRSLKLWMVLRLYGSENLRNFIRDHVNLAKHFED 442 (539)
T ss_pred EEEEEecCHHHHHHHhhcCHHHhCCcccccccCCCccccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 898877642 222 221100 000 1111 1233444566677654444 45555567888888
Q ss_pred HHHhhcCCCCCCeEeeeceeEEEEecCCc-------hhHHHHHHHHHHCCceec-c---CCCCEEEEec-cCcCCHHHHH
Q psy6548 157 ELRSRLSPDIVPVVRGKGLLNAIVLDKSI-------LEVYDVCIKMKDAGLVTK-P---ISNNIIRLSP-ALNITEQELR 224 (242)
Q Consensus 157 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~l~~~gi~~~-~---~~~~~lR~~~-~~~~t~e~i~ 224 (242)
.| ++.+. +....+..-.++.|.+.... ....++.++|.+.|.... + .+..+||++. +...++++++
T Consensus 443 ~l-~~~~~-fel~~~~~l~iVcFr~~~~~~~~~~~~~ln~~l~~~l~~~G~~~vs~t~~~g~~~lR~~i~n~~T~~~dv~ 520 (539)
T PLN02590 443 YV-AQDPS-FEVVTTRYFSLVCFRLAPVDGDEDQCNERNRELLAAVNSTGKIFISHTALSGKFVLRFAVGAPLTEEKHVT 520 (539)
T ss_pred HH-hcCCC-eEEecCCceEEEEEEecCCCCCHHHHHHHHHHHHHHHHhCCCEEEEeeEECCEEEEEEEecCCCCCHHHHH
Confidence 88 54442 11111223345555554310 224567777777776653 2 2567899986 5556789999
Q ss_pred HHHHHHHHHHHHHhhh
Q psy6548 225 EGLDIIINTINTMAAK 240 (242)
Q Consensus 225 ~~~~~l~~~l~~~~~~ 240 (242)
.+++.|.+...++.++
T Consensus 521 ~~~~~i~~~a~~~~~~ 536 (539)
T PLN02590 521 EAWQIIQKHASKFTRN 536 (539)
T ss_pred HHHHHHHHHHHHhccc
Confidence 9999999988877654
No 346
>PLN02414 glycine dehydrogenase (decarboxylating)
Probab=99.00 E-value=4.7e-08 Score=91.12 Aligned_cols=194 Identities=12% Similarity=0.106 Sum_probs=118.9
Q ss_pred CEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEEee--ccc---c-C
Q psy6548 21 NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILG--KAL---S-G 94 (242)
Q Consensus 21 ~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~s--K~~---~-~ 94 (242)
.+++++ ....+.+|.+.+ +++|.++|+++|+++++ .++. ++-.+-. ... .+..|+++.+ |+. | |
T Consensus 234 ~v~~vl-vq~P~~~G~v~d----v~~I~~~ah~~GaL~iV-aad~-lal~~l~-~pg--e~GADi~vgsgqKwg~P~G~G 303 (993)
T PLN02414 234 DVCGVL-VQYPATDGEVLD----YAEFVKNAHANGVKVVM-ATDL-LALTMLK-PPG--EWGADIVVGSAQRFGVPMGYG 303 (993)
T ss_pred ceEEEE-EecCCCCeEEcC----HHHHHHHHHHcCCEEEE-EECH-HHhcCCC-CHh--hccCcEEEECCCccccCCCCC
Confidence 455554 344456776765 99999999999999999 4442 1111100 111 3456888843 543 2 4
Q ss_pred CccchheeEeChhhhhccCCCCCCCC------------------------CCCCH---HHHHHHHHHHH--HHHh---cc
Q psy6548 95 GLYPISAVLADDEVMGTLVPGTHGST------------------------YGGNP---LACKLAMTALD--VILE---EN 142 (242)
Q Consensus 95 g~~~~g~~~~~~~~~~~l~~~~~~~~------------------------~~~~~---~~~~~a~a~l~--~~~~---~~ 142 (242)
| ..+|++..++++...+.....+++ .+.|. .++.+++++.. ++.. ++
T Consensus 304 G-P~aGflavr~~~~r~~PgriVG~s~d~~g~~~~~l~LqtReqhiRrEkaTsNict~qaL~A~la~~y~~~~g~~Gl~~ 382 (993)
T PLN02414 304 G-PHAAFLATSQEYKRLMPGRIIGVSVDSSGKPALRMAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKT 382 (993)
T ss_pred C-CCeeEEEECHHHHhhCCCcccCcccCCCCCcccccccccccchhhhcccccchhHHHHHHHHHHHHHHHHhccccHHH
Confidence 4 448999999887654432111110 01122 13333333221 1112 23
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCCeEeeeceeEEEEecCCchhHHHHHHHHHHCCceeccCCCCEEEEeccCcCCHHH
Q psy6548 143 MIENAYKMGEIFRSELRSRLSPDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQE 222 (242)
Q Consensus 143 ~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~lR~~~~~~~t~e~ 222 (242)
+.+++.++..+++++| +.++-..... ...-.+.+.++ +..++.++|.++||.++....+.+|+|++..+|++|
T Consensus 383 Ia~ri~~la~~l~~~L-~~~G~~~~~~--~~f~~vt~~~~----~~~~v~~~L~~~gI~l~~~~~~~lrvs~~e~~T~ed 455 (993)
T PLN02414 383 IAQRVHGLAGVFAAGL-KKLGFQVQSL--PFFDTVKVKCS----DADAIADAAAKVGINLRVVDANTVTVSFDETTTLED 455 (993)
T ss_pred HHHHHHHHHHHHHHHH-hhcCCccCCC--CCcCeEEEecC----CHHHHHHHHHHCCCeeEEecCCeEEEEeeccCCHHH
Confidence 5677888889999999 6655222221 11123344443 347899999999999987767789999999999999
Q ss_pred HHHHHHHHHH
Q psy6548 223 LREGLDIIIN 232 (242)
Q Consensus 223 i~~~~~~l~~ 232 (242)
|+++++.|..
T Consensus 456 Id~L~~~l~~ 465 (993)
T PLN02414 456 VDKLFKVFAG 465 (993)
T ss_pred HHHHHHHHcc
Confidence 9999999963
No 347
>PRK05367 glycine dehydrogenase; Provisional
Probab=98.99 E-value=5.2e-08 Score=90.99 Aligned_cols=195 Identities=13% Similarity=0.117 Sum_probs=123.3
Q ss_pred CCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEEee--cc---cc-
Q psy6548 20 PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILG--KA---LS- 93 (242)
Q Consensus 20 ~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~s--K~---~~- 93 (242)
++++++++ .+.+.+|.+.+ +++|.++|+++|+++++|-.+..++-. . ... .+..|+++.+ |+ +|
T Consensus 205 ~~~~~vlv-q~p~~~G~i~d----~~~i~~~ah~~Gal~~vda~~~Al~~l-~--~pg--e~GaDi~vgs~qkfg~P~g~ 274 (954)
T PRK05367 205 DDVFGVLL-QYPGTSGEVRD----YTALIAAAHARGALVAVAADLLALTLL-T--PPG--EMGADIAVGSAQRFGVPMGF 274 (954)
T ss_pred ccEEEEEE-ecCCCCeeecc----HHHHHHHHHHcCCEEEEEehhhhccCC-C--Chh--hcCCCEEEeeCcccCCCCCC
Confidence 45666544 44567786765 999999999999999999866322111 1 111 3456888844 54 12
Q ss_pred CCccchheeEeChhhhhccCCCCCCCC--------C----------------CCC---HHHHHHHHHH--HHHHHh---c
Q psy6548 94 GGLYPISAVLADDEVMGTLVPGTHGST--------Y----------------GGN---PLACKLAMTA--LDVILE---E 141 (242)
Q Consensus 94 ~g~~~~g~~~~~~~~~~~l~~~~~~~~--------~----------------~~~---~~~~~~a~a~--l~~~~~---~ 141 (242)
|| -.+|++..++++...+.+...+++ + +.| .-++.++.++ +.++.. +
T Consensus 275 GG-P~aGflavr~~~~r~lpgrivG~s~d~~g~~~~~lalqtReqhiRrekaTsNict~qaL~a~~a~~y~~~~g~~Gl~ 353 (954)
T PRK05367 275 GG-PHAAYFAVRDAYKRSMPGRIVGVSVDAAGNPALRLALQTREQHIRREKATSNICTAQVLLAVMASMYAVYHGPEGLK 353 (954)
T ss_pred CC-CCEEEEEECHHHHhhCCCCeeeeecccCCCcccccccccccccccccccccccchHHHHHHHHHHHHHHHHhhhhHH
Confidence 34 458999999888777764322211 0 011 1112222222 122323 2
Q ss_pred cHHHHHHHHHHHHHHHHHhhcCCCCCCeEeeeceeEEEEecCCchhHHHHHHHHHHCCceeccCCCCEEEEeccCcCCHH
Q psy6548 142 NMIENAYKMGEIFRSELRSRLSPDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQ 221 (242)
Q Consensus 142 ~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~lR~~~~~~~t~e 221 (242)
++.+++..+..++++.| +..+-..... ...-.+.+.++ .+..++.++|.++||.++....+.+|++++...|++
T Consensus 354 ~Ia~~~~~la~~l~~~L-~~~G~~~~~~--~~f~~~~~~~~---~~~~~i~~~l~~~gi~~~~~~~~~l~is~~e~~t~~ 427 (954)
T PRK05367 354 AIARRVHRLAAILAAGL-RALGLEVVHD--SFFDTLTVEVG---GDAAAVLARALAAGINLRRVDDDHVGISLDETTTRE 427 (954)
T ss_pred HHHHHHHHHHHHHHHHH-HhcCcccCCC--CCCCeEEEeCC---CCHHHHHHHHHHCCceeccccCCEEEEEecccCCHH
Confidence 45677888888889988 5544222111 11122333432 257899999999999997776788999999999999
Q ss_pred HHHHHHHHHH
Q psy6548 222 ELREGLDIII 231 (242)
Q Consensus 222 ~i~~~~~~l~ 231 (242)
||+++++.|.
T Consensus 428 did~l~~~l~ 437 (954)
T PRK05367 428 DLAALLAVFG 437 (954)
T ss_pred HHHHHHHHHc
Confidence 9999999996
No 348
>PLN02452 phosphoserine transaminase
Probab=98.99 E-value=8.4e-08 Score=80.95 Aligned_cols=200 Identities=13% Similarity=0.073 Sum_probs=135.2
Q ss_pred CCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEEeeccccCCccc
Q psy6548 19 NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYP 98 (242)
Q Consensus 19 ~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~sK~~~~g~~~ 98 (242)
+++...+.+.+.-..+|....+ ++++. ++++|+|-+.+ + .+.+..++.+++ ++.+.-|.+| + .+
T Consensus 143 ~~~~~~v~~~hnETstGv~~~~---~~~i~------~~~lvVDa~Ss-~--g~~pidv~~~~v--~~~saqK~lG-P-~G 206 (365)
T PLN02452 143 TPDAKFVHICANETIHGVEFKD---YPDVG------NVPLVADMSSN-F--LSKPVDVSKYGV--IYAGAQKNVG-P-SG 206 (365)
T ss_pred CCCCcEEEECCCCCCCcEecCc---ccccC------CCeEEEECCcc-c--cCcccCHHHcCE--EEEecccccC-C-CC
Confidence 4568888888888888854332 44332 38999999886 3 223344445544 4544559997 3 55
Q ss_pred hheeEeChhhhhccCCC-----------CCCCCC-CCCHHHHHHHHHHHHHHHhc----cHHHHHHHHHHHHHHHHHhhc
Q psy6548 99 ISAVLADDEVMGTLVPG-----------THGSTY-GGNPLACKLAMTALDVILEE----NMIENAYKMGEIFRSELRSRL 162 (242)
Q Consensus 99 ~g~~~~~~~~~~~l~~~-----------~~~~~~-~~~~~~~~~a~a~l~~~~~~----~~~~~~~~~~~~l~~~l~~~l 162 (242)
+|.++.++++++++.+. .....+ +.+.....+..++++.++++ .+.++.+++.+.+++.| ++.
T Consensus 207 l~~v~vr~~~l~~~~~~~~~~~~~~~~~~~~s~~~TP~v~~i~~l~~aL~~l~~~gGl~~~~~r~~~~a~~l~~~l-~~~ 285 (365)
T PLN02452 207 VTIVIIRKDLIGNARPITPGMLDYKIHAENDSLYNTPPCFGIYMCGLVFEDLLAQGGLKAMEKRNIRKADLLYDAI-DES 285 (365)
T ss_pred eEEEEEcHHHHhhcccCCCchhhHHHHHhcCCccCChhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHH-HhC
Confidence 88999999998776542 111222 34455677777788888763 46778888999999999 543
Q ss_pred CC--CCCCeEe-eeceeEEEEecCCchhHHHHHHHHHHCCceeccCC--CCEEEEeccCcCCHHHHHHHHHHHHHHHHH
Q psy6548 163 SP--DIVPVVR-GKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPIS--NNIIRLSPALNITEQELREGLDIIINTINT 236 (242)
Q Consensus 163 ~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~--~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~ 236 (242)
.. ....... .....+.|.++.. ...++|.+.+.++|++..++. -+.+|++.=...+.++++++++.+++.-++
T Consensus 286 ~G~y~~~~~~~~rs~~~vsF~~~~~-~~~~~f~~~~~~~g~~~~~G~r~~gg~R~s~yna~~~~~v~~L~~~m~~f~~~ 363 (365)
T PLN02452 286 NGFYVCPVEKSVRSLMNVPFTLGGS-ELEAEFVKEAAKAGMVQLKGHRSVGGMRASIYNAMPLAGVEKLVAFMKDFQAK 363 (365)
T ss_pred CCcccCCCChHHhCCeEEEEEcCCc-hhHHHHHHHHHHCCCcccCCccccCceEEECcCCCCHHHHHHHHHHHHHHHHh
Confidence 21 1111111 2345677787776 578899999999999998763 234999977788999999999988876543
No 349
>COG0112 GlyA Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism]
Probab=98.96 E-value=1.2e-07 Score=78.36 Aligned_cols=208 Identities=17% Similarity=0.202 Sum_probs=136.8
Q ss_pred hcCCCCCEEEEEEcc-cccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccc-cccCccCcccccccCCCCCCEEE--eec
Q psy6548 15 KLKSNPNICAFMVEP-IQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQ-TGLGRTGKLLAIHYEDVRPDIVI--LGK 90 (242)
Q Consensus 15 ~~~~~~~~~~i~~e~-~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~-~~~~~~g~~~~~~~~~~~~~~~~--~sK 90 (242)
+.+.+.+++.|+.=. .++. ..+ +++++++|++.|++|++|-+| +|+...|.. . .-.. ..|+++ ..|
T Consensus 160 k~a~e~kPK~ii~G~SaY~r---~id----~~~~reIad~VGA~L~~DmAHiaGLVA~G~~-p-~P~~-~AdvVTtTTHK 229 (413)
T COG0112 160 KLAKEVKPKLIIAGGSAYSR---PID----FKRFREIADEVGAYLMVDMAHVAGLIAGGVH-P-NPLP-HADVVTTTTHK 229 (413)
T ss_pred HHHHHhCCCEEEECcccccc---ccC----HHHHHHHHHHhCceEEehHHHHHHHHhcccC-C-CCCC-ccceEeCCccc
Confidence 555577777777644 3332 232 999999999999999999999 776444431 1 1112 267887 449
Q ss_pred cccCCccchheeEeC-hhhhhccCCCCCCCCCCCCHHHHHHHHH-HHHHHHh---ccHHHHHHHHHHHHHHHHHhhcCCC
Q psy6548 91 ALSGGLYPISAVLAD-DEVMGTLVPGTHGSTYGGNPLACKLAMT-ALDVILE---ENMIENAYKMGEIFRSELRSRLSPD 165 (242)
Q Consensus 91 ~~~~g~~~~g~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~a~a-~l~~~~~---~~~~~~~~~~~~~l~~~l~~~l~~~ 165 (242)
+|.|+ |.|.++++ +++...+....+.+..+++..-..++.+ +++...+ +++.+++.++++.+.+.| ...+-.
T Consensus 230 TlrGP--rGG~Il~~~eel~kkin~aVFPg~qggpl~HviAakaVa~~Eal~p~fk~Ya~qVv~NAkaLAe~l-~~~G~~ 306 (413)
T COG0112 230 TLRGP--RGGIILTNDEELAKKINSAVFPGLQGGPLMHVIAAKAVAFKEALEPEFKEYAKQVVKNAKALAEAL-KERGFK 306 (413)
T ss_pred CCCCC--CceEEEeccHHHHHHhhhhcCCccCCChHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHH-HHcCCe
Confidence 99975 67888888 4888888875555555554432223332 2333333 356788889999999999 665533
Q ss_pred CCCeEeeeceeEEEEecCCchhHHHHHHHHHHCCceecc----------CCCCEEEEecc----CcCCHHHHHHHHHHHH
Q psy6548 166 IVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKP----------ISNNIIRLSPA----LNITEQELREGLDIII 231 (242)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~----------~~~~~lR~~~~----~~~t~e~i~~~~~~l~ 231 (242)
+.... ....++.+++...+...+.....|-+-||.+.. ..+..||+..+ ..+.++|+++..+.+.
T Consensus 307 vvsGg-TdnHl~lVDl~~~~~~Gk~ae~~L~~~~It~NKN~iP~D~~~p~~tSGIRiGtpa~TtrG~~e~e~~~Ia~~I~ 385 (413)
T COG0112 307 VVSGG-TDNHLVLVDLRSKGLTGKKAEAALERAGITVNKNAIPFDPESPFVTSGIRIGTPAVTTRGFGEAEMEEIADLIA 385 (413)
T ss_pred EecCC-ccceEEEEEcccCCCCHHHHHHHHHHcCEeeccCCCCCCCCCCCCCccceeccHHHhhcCCCHHHHHHHHHHHH
Confidence 32211 124677788874334567777777788999852 23567999643 4567889999888888
Q ss_pred HHHHH
Q psy6548 232 NTINT 236 (242)
Q Consensus 232 ~~l~~ 236 (242)
+++..
T Consensus 386 ~vl~~ 390 (413)
T COG0112 386 DVLDG 390 (413)
T ss_pred HHHhc
Confidence 88765
No 350
>cd00615 Orn_deC_like Ornithine decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life.
Probab=98.95 E-value=2e-09 Score=88.53 Aligned_cols=140 Identities=14% Similarity=0.122 Sum_probs=80.2
Q ss_pred Chhh--hcCC-CCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccc-cCccCcccccccCCCCCCEE
Q psy6548 11 QVPA--KLKS-NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTG-LGRTGKLLAIHYEDVRPDIV 86 (242)
Q Consensus 11 d~~~--~~~~-~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~-~~~~g~~~~~~~~~~~~~~~ 86 (242)
|+++ +.+. ..+++++++..+ +.+|.+.+ +++|+++|++||+++++||+|.. +...+. ..........|++
T Consensus 141 ~~~~l~~~l~~~~~~k~v~l~~p-~~~G~~~d----l~~I~~~~~~~g~~livDeA~~~~~~~~~~-~~~~~~~~~~div 214 (294)
T cd00615 141 PPETFKKALIEHPDAKAAVITNP-TYYGICYN----LRKIVEEAHHRGLPVLVDEAHGAHFRFHPI-LPSSAAMAGADIV 214 (294)
T ss_pred CHHHHHHHHHhCCCceEEEEECC-CCCCEecC----HHHHHHHHHhcCCeEEEECcchhhhccCcc-cCcchhhcCCcEE
Confidence 4455 4443 356777777754 56786665 89999999999999999999964 322221 1111112245766
Q ss_pred E--eeccccCCccch-heeEeChhhh--hccCCC-CCCCCCCCCHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHH
Q psy6548 87 I--LGKALSGGLYPI-SAVLADDEVM--GTLVPG-THGSTYGGNPLACKLAMTALDVILE--ENMIENAYKMGEIFRSEL 158 (242)
Q Consensus 87 ~--~sK~~~~g~~~~-g~~~~~~~~~--~~l~~~-~~~~~~~~~~~~~~~a~a~l~~~~~--~~~~~~~~~~~~~l~~~l 158 (242)
+ ++|+++| ++. |++..+.+.. +++... ....+.+.+.+.+++..++++.+.. +++.++..++...+|+.|
T Consensus 215 ~~S~hK~l~g--~~~~~~l~~~~~~~~~~~~~~~~~~~~ttsps~~~~asl~~a~~~~~~~g~~~~~~~~~~~~~~r~~l 292 (294)
T cd00615 215 VQSTHKTLPA--LTQGSMIHVKGDLVNPDRVNEALNLHQSTSPSYLILASLDVARAMMALEGKELVEELIELALYARQEI 292 (294)
T ss_pred EEchhcccch--HhHHHHHHhCCCcCCHHHHHHHHHHHCCCCcHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 6 6699864 444 4443443311 112111 1122334455555555566665543 345666777777777766
No 351
>COG1103 Archaea-specific pyridoxal phosphate-dependent enzymes [General function prediction only]
Probab=98.91 E-value=1.3e-07 Score=74.24 Aligned_cols=202 Identities=16% Similarity=0.221 Sum_probs=124.2
Q ss_pred CCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEEee--ccccCCcc
Q psy6548 20 PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILG--KALSGGLY 97 (242)
Q Consensus 20 ~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~s--K~~~~g~~ 97 (242)
+.+++.++..+.++.|.... .+.++++|+++|++++...+|+ .|+.. .....+.+|+++-| |++++. -
T Consensus 155 ~~~~lallTh~Dg~YGNl~D----akkva~ic~e~gvPlllN~AYt-~Grmp----vs~ke~g~DFiVgSGHKsmAAs-~ 224 (382)
T COG1103 155 DPPALALLTHVDGEYGNLAD----AKKVAKICREYGVPLLLNCAYT-VGRMP----VSGKEIGADFIVGSGHKSMAAS-A 224 (382)
T ss_pred CCceEEEEeccCCCcCCchh----hHHHHHHHHHcCCceEeeccee-ecccc----ccccccCCCEEEecCccchhcc-C
Confidence 45899999999999996553 8889999999999999999996 33222 22335678999865 899966 6
Q ss_pred chheeEeChhhhhccCCCC-----------CCCCCCCCHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHHhhcCC
Q psy6548 98 PISAVLADDEVMGTLVPGT-----------HGSTYGGNPLACKLAMTALDVILE--ENMIENAYKMGEIFRSELRSRLSP 164 (242)
Q Consensus 98 ~~g~~~~~~~~~~~l~~~~-----------~~~~~~~~~~~~~~a~a~l~~~~~--~~~~~~~~~~~~~l~~~l~~~l~~ 164 (242)
|+|.+..++++.+...+.+ .+-|..+- .+....|++-...+ ..+.+.+ ++++++.+.| ..++.
T Consensus 225 PiGvl~~~eE~ae~V~r~Sg~~~~~KEvellGCT~rGa--pivTlmASfP~V~eRVkrWdeEv-~kaR~fv~el-Ekigg 300 (382)
T COG1103 225 PIGVLAMSEEWAEIVLRRSGRAFPKKEVELLGCTVRGA--PIVTLMASFPHVVERVKRWDEEV-EKARWFVAEL-EKIGG 300 (382)
T ss_pred CeeEEeehhHHHHHHHhhcccccccceeeeecccccCc--hHHHHHhcCHHHHHHHHHHHHHH-HHHHHHHHHH-HHhhh
Confidence 8999999988877664422 11111111 22223344433322 1222222 3456666666 55542
Q ss_pred CCC-CeEeeeceeEEEEecCCchhHH-------HHHHHHHHCCcee-ccCCCCEEEEeccCcCCHHHHHHHHHHHHHHHH
Q psy6548 165 DIV-PVVRGKGLLNAIVLDKSILEVY-------DVCIKMKDAGLVT-KPISNNIIRLSPALNITEQELREGLDIIINTIN 235 (242)
Q Consensus 165 ~~~-~~~~~~~~~~~~~~~~~~~~~~-------~~~~~l~~~gi~~-~~~~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~ 235 (242)
... ...+-..-...|+.+.-...++ =+++.|.++||.- .|+-...+.++ .+..+.|+++..++.++++++
T Consensus 301 ~~qlG~rPk~HdLm~Fetp~f~eIakk~~r~gyFlY~ELK~RgI~GI~~G~Tk~~K~s-vyGl~~Eqve~V~~afkeI~e 379 (382)
T COG1103 301 VKQLGERPKNHDLMKFETPVFHEIAKKHKRKGYFLYEELKKRGIHGIQPGQTKYFKLS-VYGLSWEQVEYVVDAFKEIAE 379 (382)
T ss_pred HHHhCCCCcccceeeecCchHHHHHHhCcCCceeeHHHHHhcCccccccCceeEEEEE-eecCCHHHHHHHHHHHHHHHH
Confidence 111 1111222234444444211111 1577888888764 35555667776 356799999999999999887
Q ss_pred H
Q psy6548 236 T 236 (242)
Q Consensus 236 ~ 236 (242)
+
T Consensus 380 k 380 (382)
T COG1103 380 K 380 (382)
T ss_pred h
Confidence 6
No 352
>PRK13237 tyrosine phenol-lyase; Provisional
Probab=98.89 E-value=2.9e-07 Score=78.80 Aligned_cols=211 Identities=14% Similarity=0.101 Sum_probs=123.6
Q ss_pred CEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEecccc-c---cC------ccCcccc--cccCCCCCCEEEe
Q psy6548 21 NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQT-G---LG------RTGKLLA--IHYEDVRPDIVIL 88 (242)
Q Consensus 21 ~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~-~---~~------~~g~~~~--~~~~~~~~~~~~~ 88 (242)
+++.+.++...|..|+.+.+.+.++++.++|++||+.+|.|.++. | |- ..+.... .....-..|.++|
T Consensus 177 ~~~lV~a~itvn~~GGqpvs~~~m~~I~elA~~~Gl~Vi~DaAra~gna~fI~~re~~y~~~~i~ei~~e~~s~aD~~t~ 256 (460)
T PRK13237 177 NIAYICLAVTVNLAGGQPVSMANMRAVRELCDKHGIKVFFDATRCVENAYFIKEREEGYQDKSIKEIVHEMFSYADGCTM 256 (460)
T ss_pred ccCceEEEEecccCCCeeCCHHhHHHHHHHHHHcCCEEEEECcchhcChhhhcccccccCCCcHhHHhhhccCcCcEEEE
Confidence 455666666666665566666789999999999999999999994 2 11 1111100 0111123577776
Q ss_pred e--ccccCCccchheeEe-ChhhhhccCCCCC---CC-CCCCC-HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHh
Q psy6548 89 G--KALSGGLYPISAVLA-DDEVMGTLVPGTH---GS-TYGGN-PLACKLAMTALDVILEENMIENAYKMGEIFRSELRS 160 (242)
Q Consensus 89 s--K~~~~g~~~~g~~~~-~~~~~~~l~~~~~---~~-~~~~~-~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l~~ 160 (242)
| |.++++ . .|+++. +++++++++.... +. ++.+- .--+.+....++...++++..+.-...++|.+.| .
T Consensus 257 S~~K~~~~~-~-GG~i~t~D~eL~~~~r~~~~~~eG~~tygg~~grd~~alAvgl~E~~~~~y~~~ri~~~~~l~~~L-~ 333 (460)
T PRK13237 257 SGKKDCLVN-I-GGFLAMNDEELFDEAKELVVVYEGMPSYGGMAGRDMEAMAIGIEESVQYEYIEHRVGQVRYLGEKL-L 333 (460)
T ss_pred eCCCCCCCC-C-ceEEEECCHHHHHHHHHhccccCCCcCCCChhhhHHHHHHhHHHhhchHHHHHHHHHHHHHHHHHH-H
Confidence 5 777744 2 345544 5778887775421 21 33221 1122221113443434456666667778888888 5
Q ss_pred hcCCCCCCeEeeeceeEEEEecC-------CchhHHHHHHHHHHC-Cceec-------cC----------CCCEEEEec-
Q psy6548 161 RLSPDIVPVVRGKGLLNAIVLDK-------SILEVYDVCIKMKDA-GLVTK-------PI----------SNNIIRLSP- 214 (242)
Q Consensus 161 ~l~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~l~~~-gi~~~-------~~----------~~~~lR~~~- 214 (242)
+.+ ++...+..|+-++++... ...-++.++-.|..+ ||=.. .. .-..+|++.
T Consensus 334 ~~G--vpv~~p~ggH~v~vda~~~lph~~~~~~p~~al~~~ly~~~GiR~~e~g~~~~~~~~~~~~~~~~~~el~rlaip 411 (460)
T PRK13237 334 AAG--VPIVEPVGGHAVFLDARRFLPHLPQDQFPAQALAAELYIESGVRSMERGIVSAGRDPKTGENHYPKLELVRLTIP 411 (460)
T ss_pred HCC--CceecCCCceEEEEEhHHhCCCCCcccChHHHHHHHHHHHhCcCeEeecceecccCCCCCccCCCccceeeeccc
Confidence 544 333335566777765332 224566777777643 43221 11 125799974
Q ss_pred cCcCCHHHHHHHHHHHHHHHHH
Q psy6548 215 ALNITEQELREGLDIIINTINT 236 (242)
Q Consensus 215 ~~~~t~e~i~~~~~~l~~~l~~ 236 (242)
.-.-|.+++|...++|..+.++
T Consensus 412 rr~yt~~h~~~v~~~~~~~~~~ 433 (460)
T PRK13237 412 RRVYTYAHMDVVADSVIKLYKH 433 (460)
T ss_pred cccccHHHHHHHHHHHHHHHHh
Confidence 4556999999999999887765
No 353
>PRK12462 phosphoserine aminotransferase; Provisional
Probab=98.89 E-value=4.3e-07 Score=76.18 Aligned_cols=208 Identities=14% Similarity=0.078 Sum_probs=136.4
Q ss_pred CCCChhh-hcCC-CCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCE
Q psy6548 8 KSKQVPA-KLKS-NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDI 85 (242)
Q Consensus 8 ~~~d~~~-~~~~-~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~ 85 (242)
+|+.+.. ..+. +.+...+.+.+.-..+|...+ ++.+.+++++|+|-+-+ + .+.++.++.| |+
T Consensus 128 ~~~~~p~~~~~~~~~d~~~v~~t~NETstGv~~~---------~~~~~~~~llvvD~sS~-~--~s~pid~~~~----dv 191 (364)
T PRK12462 128 GYRTLPSLAELDWDARAPFRHYVSNETVEGLQFP---------DAAGLPDSPLIADMSSD-F--MSRPFDVEAY----GM 191 (364)
T ss_pred CCCcCCCHHHhccCCCCcEEEEccCCCCceEecC---------cccccCCCeEEEEcCch-h--hCCCCChHHc----cE
Confidence 4444433 3333 345777888888888886554 23334789999997754 3 2233333333 67
Q ss_pred EEee--ccccCCccchheeEeChhhhhccCCC-----------CCCCCC-CCCHHHHHHHHHHHHHHHhc--c---HHHH
Q psy6548 86 VILG--KALSGGLYPISAVLADDEVMGTLVPG-----------THGSTY-GGNPLACKLAMTALDVILEE--N---MIEN 146 (242)
Q Consensus 86 ~~~s--K~~~~g~~~~g~~~~~~~~~~~l~~~-----------~~~~~~-~~~~~~~~~a~a~l~~~~~~--~---~~~~ 146 (242)
+..| |++| + -+++.++.+++++++..+. ...+++ +.+.....++..+++.+.++ + +.++
T Consensus 192 i~agsQKnlg-P-~Gltvvivs~~al~~~~~~~p~~ldy~~~~~~~s~~nTPpv~~iy~l~~~l~~i~~e~GGl~~~~~r 269 (364)
T PRK12462 192 VYAHAQKNLG-P-AGVTVAIIRRALLERVPDTLPPMLDFRTHVEHRSNYNTPPVFAIYVMALVLRWIRDEIGGVHAMRDI 269 (364)
T ss_pred EEeeccccCC-C-CceEEEEECHHHHhhccccCCchhhHHHHHhcCCCCCCchHHHHHHHHHHHHHHHHhccCHHHHHHH
Confidence 7654 9999 3 4578889999988776542 122333 34455777777788888655 3 5677
Q ss_pred HHHHHHHHHHHHHhhcCC--CCCCeEeeec-eeEEEEecCCchhHHHHHHHHHHCCceeccC--CCCEEEEeccCcCCHH
Q psy6548 147 AYKMGEIFRSELRSRLSP--DIVPVVRGKG-LLNAIVLDKSILEVYDVCIKMKDAGLVTKPI--SNNIIRLSPALNITEQ 221 (242)
Q Consensus 147 ~~~~~~~l~~~l~~~l~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~--~~~~lR~~~~~~~t~e 221 (242)
.+++++.+++.+ +.... .........+ .-+.|.+.++ ....+|.+.+.++|+.--.+ .-+.+|.+.=-.++.|
T Consensus 270 ~~~ka~~ly~~i-d~~~~~~~~~~~~~~RS~mnv~f~~~~~-~l~~~f~~~a~~~gl~~lkGhr~vgg~Ras~yna~~~e 347 (364)
T PRK12462 270 NARKAAMLYATL-DALNEVIDCHAHRAARSTMNVAFRFRQP-RLDTLFKEQSTEAGFCGLSGHRSIGGIRASLYNAVSEQ 347 (364)
T ss_pred HHHHHHHHHHHH-HhCCCcccCCCChhhcCcceEEEEcCCH-HHHHHHHHHHHHCCCccccCCcccCceEEEcCCCCCHH
Confidence 778888888888 66542 1112222223 3445566665 67788999999999988654 3466999977778999
Q ss_pred HHHHHHHHHHHHHH
Q psy6548 222 ELREGLDIIINTIN 235 (242)
Q Consensus 222 ~i~~~~~~l~~~l~ 235 (242)
+++++++-+++.-+
T Consensus 348 ~v~~L~~fm~~f~~ 361 (364)
T PRK12462 348 AVSRLCAFLKDFAI 361 (364)
T ss_pred HHHHHHHHHHHHHH
Confidence 99998888776544
No 354
>TIGR03799 NOD_PanD_pyr putative pyridoxal-dependent aspartate 1-decarboxylase. This enzyme is proposed here to be a form of aspartate 1-decarboxylase, pyridoxal-dependent, that represents a non-orthologous displacement to the more widely distributed pyruvoyl-dependent form (TIGR00223). Aspartate 1-decarboxylase makes beta-alanine, used usually in pathothenate biosynthesis, by decarboxylation from asparatate. A number of species with the PanB and PanC enzymes, however, lack PanD. This protein family occurs in a number of Proteobacteria that lack PanD. This enzyme family appears to be a pyridoxal-dependent enzyme (see pfam00282). The family was identified by Partial Phylogenetic Profiling; members in Geobacter sulfurreducens, G. metallireducens, and Pseudoalteromonas atlantica are clustered with the genes for PanB and PanC. We suggest the gene symbol panP (panthothenate biosynthesis enzyme, Pyridoxal-dependent).
Probab=98.87 E-value=2.6e-07 Score=81.39 Aligned_cols=200 Identities=17% Similarity=0.129 Sum_probs=117.0
Q ss_pred EEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCC-CCCEEEee--ccccCCccc
Q psy6548 22 ICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDV-RPDIVILG--KALSGGLYP 98 (242)
Q Consensus 22 ~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~-~~~~~~~s--K~~~~g~~~ 98 (242)
+.+|+.....+.+|.+-| +++|+++|++||+++++|.+|.+.............++ ..|.++++ |++.++ ++
T Consensus 266 ~~~vvataGtt~tGaiDp----l~eIa~i~~~~g~~lHVDaA~gg~~~~~~~~r~~l~gle~aDSit~d~HK~l~~P-~g 340 (522)
T TIGR03799 266 PLAIVGVAGTTETGNIDP----LDEMADIAQELGCHFHVDAAWGGATLLSNTYRHLLKGIERADSVTIDAHKQLYVP-MG 340 (522)
T ss_pred cEEEEEEecCcCCCCcCC----HHHHHHHHHHcCCeEEEEchhhhHHHhCHHHHHHhcCchhCCEEEEChhhcCCcC-cc
Confidence 333443344556787776 99999999999999999999975311111000011243 56888865 999988 88
Q ss_pred hheeEeC-hhhhhccCCC--C---CC------CCC--CCCHHHHHHHHHHHHHHHhc---cHHHHHHHHHHHHHHHHHhh
Q psy6548 99 ISAVLAD-DEVMGTLVPG--T---HG------STY--GGNPLACKLAMTALDVILEE---NMIENAYKMGEIFRSELRSR 161 (242)
Q Consensus 99 ~g~~~~~-~~~~~~l~~~--~---~~------~~~--~~~~~~~~~a~a~l~~~~~~---~~~~~~~~~~~~l~~~l~~~ 161 (242)
+|.++.+ +...+.+... + .+ .++ +.+..+ ...+++++.+... .+.++..++++++.+.| ++
T Consensus 341 ~G~llvr~~~~~~~~~~~~~Yl~~~~~~d~~~~~legsR~~~a-l~lw~aL~~lG~~G~~~ii~~~~~la~~l~~~L-~~ 418 (522)
T TIGR03799 341 AGMVLFKDPALMSAIEHHAEYILRKGSKDLGSHTLEGSRPGMA-MLVYAGLHIIGRKGYELLIDQSIEKAKYFADLI-QQ 418 (522)
T ss_pred cEEEEEeCHHHHHHhccCcchhcCCCCCccccceeecCcchHH-HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH-hh
Confidence 9988775 4454444431 0 00 111 122233 2356777776553 45677777888888888 55
Q ss_pred cCCCCCCeEeeeceeEEEEecCCc---------------------hhHHHHHHHHHHCCceeccC-----------CCCE
Q psy6548 162 LSPDIVPVVRGKGLLNAIVLDKSI---------------------LEVYDVCIKMKDAGLVTKPI-----------SNNI 209 (242)
Q Consensus 162 l~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~l~~~gi~~~~~-----------~~~~ 209 (242)
.+. +....++.-.++.|.+.... .....+.+++.+.|..+... +...
T Consensus 419 ~~~-~el~~~p~l~iv~Fr~~p~~~~~~l~~~~~~~~~~~~~~~~~ln~~i~~~~~~~G~~~vs~t~l~~~~~~g~~~~~ 497 (522)
T TIGR03799 419 QPD-FELVTEPELCLLTYRYVPEEVQQALAKADEEQREKINELLDRLTKFIQKRQREAGKSFVSRTRLTPAQYDHQPTVV 497 (522)
T ss_pred CCC-eEEecCCCccEEEEEEeChhhcccccccchhhhhhHHHHHHHHHHHHHHHHHhcCCEEEEEEEecccccCCCCcEE
Confidence 543 11111222234555543210 12246677777778776431 1246
Q ss_pred EEEec-cCcCCHHHHHHHHHH
Q psy6548 210 IRLSP-ALNITEQELREGLDI 229 (242)
Q Consensus 210 lR~~~-~~~~t~e~i~~~~~~ 229 (242)
+|+++ +...|+++++.+++.
T Consensus 498 lR~~~~np~tt~~~i~~~l~~ 518 (522)
T TIGR03799 498 FRVVLANPLTTHEILQDILDE 518 (522)
T ss_pred EEEEecCCCCCHHHHHHHHHH
Confidence 99985 555678888887764
No 355
>COG0403 GcvP Glycine cleavage system protein P (pyridoxal-binding), N-terminal domain [Amino acid transport and metabolism]
Probab=98.85 E-value=6.2e-07 Score=74.77 Aligned_cols=215 Identities=13% Similarity=0.130 Sum_probs=134.2
Q ss_pred ccccCCCChhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEE--eccccccCccCcccccccCC
Q psy6548 4 QFPVKSKQVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIA--DEVQTGLGRTGKLLAIHYED 80 (242)
Q Consensus 4 ~~~~~~~d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~--De~~~~~~~~g~~~~~~~~~ 80 (242)
+...+++|+++ +...++++++++++.++..| .+.. .++++.+.++++|+++++ |=.-.++ .-.++ .
T Consensus 192 i~~~~~~d~~~l~~~~~~~~~gv~vQyP~~~G-~~~~---d~~~l~~~~h~~~al~~v~aDplaL~L--L~pPG-----e 260 (450)
T COG0403 192 IEVVDADDLDDLESADDGDVFGVLVQYPNTFG-IVEE---DLRALIEAAHSAGALVIVAADPLALGL--LKPPG-----E 260 (450)
T ss_pred EEEeccchhhhhhhccccCeEEEEEecCCCCC-ccch---hHHHHHHHHhhcCCEEEEEechhHhhc--cCCcc-----c
Confidence 55677888888 55566799999999987544 2343 399999999999998874 3222111 11111 2
Q ss_pred CCCCEEE-----eecccc-CCccchheeEeChhhhhccCCCCCC----------------------------CCCCCCHH
Q psy6548 81 VRPDIVI-----LGKALS-GGLYPISAVLADDEVMGTLVPGTHG----------------------------STYGGNPL 126 (242)
Q Consensus 81 ~~~~~~~-----~sK~~~-~g~~~~g~~~~~~~~~~~l~~~~~~----------------------------~~~~~~~~ 126 (242)
+..|+++ |+=.++ || ..+|++.++++....+--...+ ++.+.+..
T Consensus 261 ~GADIvvG~~QrfGvPmgfGG-Phag~fA~~~~~~R~mPGRlVG~S~D~~G~~A~rLaLQTREQHIRReKATSNICTnQa 339 (450)
T COG0403 261 FGADIVVGSAQRFGVPMGFGG-PHAGYFAVKDEFKRQMPGRLVGVSVDAAGKRAFRLALQTREQHIRREKATSNICTNQA 339 (450)
T ss_pred cCCceEEecCcccCCCcCCCC-cceeeeeEhHhHhhcCCCceeeeeecCCCCchhhhhHHHHHHHHhhhccchhhhHHHH
Confidence 3568887 444455 66 6789999988876655432111 22222322
Q ss_pred --HHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHHhhcCCCCCCeEeeeceeEEEEecCCchhHHHHHHHHHHCCcee
Q psy6548 127 --ACKLAMTALDVILE--ENMIENAYKMGEIFRSELRSRLSPDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVT 202 (242)
Q Consensus 127 --~~~~a~a~l~~~~~--~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~ 202 (242)
+.+++..+.-...+ .++..++.++..++.++| +..+.+.. +....+|.-+.+.-+......+.++....|+-+
T Consensus 340 LlA~~As~y~~~hGp~GLk~iA~r~~~~a~~la~~L-~~~~~g~~--~~~~~fFdt~~v~~~~~~~~~l~~~~~~~G~~L 416 (450)
T COG0403 340 LLALAASMYAVYHGPQGLKEIAERIHRLAAYLAAGL-KEIGAGVE--LVFDHFFDTFTVRVPEEVAEALLAAAIAGGINL 416 (450)
T ss_pred HHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHH-hhcCCceE--eccccceeeEEEecchhHHHHHHHHHHhcCCce
Confidence 22222222111111 245677778888888888 65442211 111144444444433135667778888889999
Q ss_pred ccCCCCEEEEeccCcCCHHHHHHHHHHHHHH
Q psy6548 203 KPISNNIIRLSPALNITEQELREGLDIIINT 233 (242)
Q Consensus 203 ~~~~~~~lR~~~~~~~t~e~i~~~~~~l~~~ 233 (242)
+..+...+=+++.-..|+++++.+++.+...
T Consensus 417 ~~~~~~~~~ia~tEt~t~~~i~~l~~~~~~~ 447 (450)
T COG0403 417 RRVDADTVLIALTETTTKEDIDALVAAFGGV 447 (450)
T ss_pred eeecCCceEEEeecccCHHHHHHHHHHHhhh
Confidence 8887778888888888999999999988764
No 356
>TIGR02618 tyr_phenol_ly tyrosine phenol-lyase. This model describes a group of tyrosine phenol-lyase (4.1.99.2) (beta-tyrosinase), a pyridoxal-phosphate enzyme closely related to tryptophanase (4.1.99.1) (see model TIGR02617). Both belong to the beta-eliminating lyase family (pfam01212)
Probab=98.83 E-value=4.9e-07 Score=77.27 Aligned_cols=209 Identities=15% Similarity=0.104 Sum_probs=122.7
Q ss_pred CEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCc-----cCcccc----c----ccCCCCCCEEE
Q psy6548 21 NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGR-----TGKLLA----I----HYEDVRPDIVI 87 (242)
Q Consensus 21 ~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~-----~g~~~~----~----~~~~~~~~~~~ 87 (242)
+++.++++...|..|+.+.+.+.++++.++|++||+.+|.|.++. +++ ..+... . ...--..|..+
T Consensus 170 ~~~lV~~e~t~N~~GG~pvs~~~l~~I~elA~~~Gl~vi~DaAR~-~gNA~~I~~re~g~~~~~i~ei~~e~~~~aD~~~ 248 (450)
T TIGR02618 170 KIPYICLAVTVNLAGGQPVSMANMREVRELCEAHGIKVFYDATRC-VENAYFIKEREQGYEDKSIAEILKEMMSYADGCT 248 (450)
T ss_pred ccCceEEEEecccCCCeeCCHHHHHHHHHHHHHcCCEEEEEccch-hhChhhhhcccccccCCCHHHHHHHHhccCcEEE
Confidence 566778888777765577777889999999999999999999985 211 000000 0 00001245544
Q ss_pred ee--ccccCCccchh-eeE-eChhhhhccCCCC--CCC--CCCC-CHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Q psy6548 88 LG--KALSGGLYPIS-AVL-ADDEVMGTLVPGT--HGS--TYGG-NPLACKLAMTALDVILEENMIENAYKMGEIFRSEL 158 (242)
Q Consensus 88 ~s--K~~~~g~~~~g-~~~-~~~~~~~~l~~~~--~~~--~~~~-~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l 158 (242)
+| |-++ .++| ++. .+++++++++... ..+ ++++ ....+.+..-+++...++.+.++.....++|.+.|
T Consensus 249 ~S~~Kd~~---~~~GG~l~~~d~~l~~k~r~~~~~~eG~~tyGgla~r~~~ala~gL~e~~~~~y~~~r~~~a~~La~~L 325 (450)
T TIGR02618 249 MSGKKDCL---VNIGGFLCMNDDEMFQSAKELVVVFEGMPSYGGLAGRDMEAMAIGIREAVDYEYIEHRVKQVRYLGDKL 325 (450)
T ss_pred EeeccCCC---CCCceEEEeCCHHHHHHHHHHhhhcCCccccCchhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 44 4444 3333 344 4678888776541 111 1111 11122222223444444456666667788999999
Q ss_pred HhhcCCCCCCeEeeeceeEEEEecC-------CchhHHHHHHHHHHC-Cceecc-------C----------CCCEEEEe
Q psy6548 159 RSRLSPDIVPVVRGKGLLNAIVLDK-------SILEVYDVCIKMKDA-GLVTKP-------I----------SNNIIRLS 213 (242)
Q Consensus 159 ~~~l~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~l~~~-gi~~~~-------~----------~~~~lR~~ 213 (242)
++.+ +....+..|+.++++... .+.-++.++-.|... ||=... . .-..+|++
T Consensus 326 -~~~G--vpv~~p~ggh~V~vda~~~lph~~~~~~p~~al~~~ly~~~gir~~e~g~~~~~~~~~~~~~~~~~~el~rla 402 (450)
T TIGR02618 326 -KAAG--VPIVEPVGGHAVFLDARRFLPHIPQDQFPAQSLAASIYVETGVRSMERGIVSAGRNNVTGEHHRPKLELVRLT 402 (450)
T ss_pred -HHCC--CcccCCCCcceEEEEhHHhCCCCChhhChHHHHHHHHHHHhCccEEeecceecccCCCCCcccCCccceeeec
Confidence 6664 222335566778776443 224566777777643 432211 1 12579997
Q ss_pred c-cCcCCHHHHHHHHHHHHHHHHH
Q psy6548 214 P-ALNITEQELREGLDIIINTINT 236 (242)
Q Consensus 214 ~-~~~~t~e~i~~~~~~l~~~l~~ 236 (242)
. .-.-|.++++...+++..+.++
T Consensus 403 iprr~yt~~h~~~v~~~~~~~~~~ 426 (450)
T TIGR02618 403 IPRRVYTYAHMDVVADGIIKLYKH 426 (450)
T ss_pred cccccccHhHHHHHHHHHHHHHhh
Confidence 4 4556899999999999887765
No 357
>PLN02263 serine decarboxylase
Probab=98.80 E-value=1.3e-06 Score=75.38 Aligned_cols=195 Identities=14% Similarity=0.010 Sum_probs=118.3
Q ss_pred EEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCC-----EEEEeccccccCc-cCcccccccCC--CCCCEEE--eecc
Q psy6548 22 ICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNV-----LFIADEVQTGLGR-TGKLLAIHYED--VRPDIVI--LGKA 91 (242)
Q Consensus 22 ~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~-----~li~De~~~~~~~-~g~~~~~~~~~--~~~~~~~--~sK~ 91 (242)
+.+|+..-...+.|.+=| +++|.++|++||+ ++.+|.++.|+.- ..+. .+.+. ...|-++ .-|.
T Consensus 229 P~iVvataGTT~~GAiDp----i~eIa~i~~~~g~~~~~iwlHVDAA~GG~~lPf~~~--~~~~df~~~vDSIsvD~HK~ 302 (470)
T PLN02263 229 PAIINVNIGTTVKGAVDD----LDLVIKTLEECGFSQDRFYIHCDGALFGLMMPFVKR--APKVTFKKPIGSVSVSGHKF 302 (470)
T ss_pred cEEEEEEecCCCCcCCCC----HHHHHHHHHHcCCccCCeeEEEeccchhhHhhhccc--ccccCCCcCccEEEECCccc
Confidence 455555544455564443 9999999999997 9999999987421 1110 01111 1245444 4599
Q ss_pred ccCCccchheeEeChhhhhccCCC-----CCCCCCC--CCHHHHHHHHHHHHHHHhccH---HHHHHHHHHHHHHHHHhh
Q psy6548 92 LSGGLYPISAVLADDEVMGTLVPG-----THGSTYG--GNPLACKLAMTALDVILEENM---IENAYKMGEIFRSELRSR 161 (242)
Q Consensus 92 ~~~g~~~~g~~~~~~~~~~~l~~~-----~~~~~~~--~~~~~~~~a~a~l~~~~~~~~---~~~~~~~~~~l~~~l~~~ 161 (242)
++.+ +++|.++..+.....+... ..-.+.. .+.......+.+++.+-.+++ .++..++++++.+.| ++
T Consensus 303 l~~P-~~cgvll~R~~~~~~~~~~~~Yl~~~d~ti~gSR~g~~al~lW~~L~~~G~~G~~~~i~~~~~~A~~l~~~l-~~ 380 (470)
T PLN02263 303 VGCP-MPCGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKGYRGFQKEVQKCLRNAHYLKDRL-RE 380 (470)
T ss_pred cCCC-cCEEEEEEehhhHhhhccChHhhCCCCCCcCCCCCcHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHH-Hh
Confidence 9988 8999988886554333221 0111222 222334556777776554444 455556778888888 55
Q ss_pred cCCCCCCeEeeeceeEEEEecCCchhHHHHHHHHHHCCceeccCCCCEEEEeccCcCCHHHHHHHHHHHHHHHHH
Q psy6548 162 LSPDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINT 236 (242)
Q Consensus 162 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~ 236 (242)
.+ .....++.+..+.|.-+.+ .+..+|..+... ++.++++.....+.+.++++++.|++..+.
T Consensus 381 ~g--~~~~~~p~s~~V~f~~p~~---------~~~~~gW~L~~~-~~~~Hivvmphv~~~~id~fi~DL~~~~~~ 443 (470)
T PLN02263 381 AG--ISAMLNELSSTVVFERPKD---------EEFVRRWQLACQ-GNIAHVVVMPSVTIEKLDYFLKELVEKRST 443 (470)
T ss_pred CC--CeEEeCCCceEEEEecCch---------HHhhcceEEccC-CCcEEEEEcCCCCHHHHHHHHHHHHHHHhh
Confidence 54 2222234445555543332 123578887765 456888876667889999999999887764
No 358
>PF02347 GDC-P: Glycine cleavage system P-protein; InterPro: IPR020580 This family consists of glycine cleavage system P-proteins (1.4.4.2 from EC) from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex (2.1.2.10 from EC (GDC) also annotated as glycine cleavage system or glycine synthase. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor, carbon dioxide is released and the remaining methylamin moiety is then transferred to the lipoamide cofactor of the H protein. GDC consists of four proteins P, H, L and T []. The reaction catalysed by this protein is: Glycine + lipoylprotein = S-aminomethyldihydrolipoylprotein + CO2 ; GO: 0004375 glycine dehydrogenase (decarboxylating) activity, 0055114 oxidation-reduction process; PDB: 1WYV_A 1WYT_C 1WYU_A.
Probab=98.79 E-value=9e-07 Score=75.30 Aligned_cols=195 Identities=15% Similarity=0.175 Sum_probs=101.5
Q ss_pred CCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccc-cccCccCcccccccCCCCCCEEE-eecccc---
Q psy6548 19 NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQ-TGLGRTGKLLAIHYEDVRPDIVI-LGKALS--- 93 (242)
Q Consensus 19 ~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~-~~~~~~g~~~~~~~~~~~~~~~~-~sK~~~--- 93 (242)
++++++|++..++..| ++-+ ++++.++++++|+++++ .+. ..++-.-.+ . .+..|+++ .+|.||
T Consensus 195 ~~~~a~v~vq~Pn~~G--~~ed---~~~i~~~~h~~gal~~~-~ad~~aL~~l~~P---g--e~GADI~vg~~Q~fg~p~ 263 (429)
T PF02347_consen 195 DDDTAAVMVQNPNTFG--VFED---IKEIADIAHAAGALVIV-GADPNALGGLKSP---G--EYGADIVVGEHQTFGIPM 263 (429)
T ss_dssp STTEEEEEEESS-TTS--B--T---HHHHHHHHHHTT-EEEE-CGGCCGCCTC--G---G--GGT-SEEEECCTTTT---
T ss_pred ccCeEEEEeecCCCCc--eEee---HHHHHHHHHHcCCEEEE-ecCHHHHhCcCCh---h--hcCccEEeeCCCCCcccC
Confidence 6789999999987654 3432 99999999999999987 433 111111111 1 23568887 557776
Q ss_pred --CCccchheeEeChhhhhccCCC----------------------------CCCCCCCCCHHHHHH-HHHHHHHHHh--
Q psy6548 94 --GGLYPISAVLADDEVMGTLVPG----------------------------THGSTYGGNPLACKL-AMTALDVILE-- 140 (242)
Q Consensus 94 --~g~~~~g~~~~~~~~~~~l~~~----------------------------~~~~~~~~~~~~~~~-a~a~l~~~~~-- 140 (242)
|| -.+|++.++++++.++-.. ...++++.+...++. +..-+..+-.
T Consensus 264 ~~GG-P~~G~~a~~~~l~r~lPGRiVG~t~D~~G~~~~~ltLqtREQHIrReKAtSNIctnqaL~A~~a~~Yl~~~G~~G 342 (429)
T PF02347_consen 264 GFGG-PGAGFFAVREDLVRQLPGRIVGQTKDADGKRAFVLTLQTREQHIRREKATSNICTNQALLALAAAIYLAYLGPEG 342 (429)
T ss_dssp CCC--S--EEEEE-GGGGGGS-S-EEEEEEBCCCSCCEEEE-GGGTCHHHGCCSTT---SS-HHHHHHHHHHHHHHHHHH
T ss_pred CCCC-CCeeeEEEhhhhhhhCCCceecccccccccceeeeccccccccccccchhhhhhhhHHHHHHHHHHHHHHhCHHH
Confidence 56 6688999998877766432 111223334333221 1112222323
Q ss_pred -ccHHHHHHHHHHHHHHHHHhhcCCCCCCeEeeeceeEEE-EecCCchhHHHHHHHHHHCCceeccCCCCEEEEeccCcC
Q psy6548 141 -ENMIENAYKMGEIFRSELRSRLSPDIVPVVRGKGLLNAI-VLDKSILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNI 218 (242)
Q Consensus 141 -~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~lR~~~~~~~ 218 (242)
.++-+....++.++++.| +.... ... ....++-.+ ....+ ....++.+++...|+.......+.+-+++.-..
T Consensus 343 L~~iA~~~~~~A~yl~~~L-~~~~~-~~~--~~~~f~e~v~~~~~~-~~~~~l~~~~~~~gl~~~~~~~~~~li~~TE~~ 417 (429)
T PF02347_consen 343 LREIAERIHLNAHYLAERL-KKIYG-LPF--DNPFFFEFVVVFSKD-KEVEELLKRGIEGGLNLRYPDDGALLICVTETR 417 (429)
T ss_dssp HHHHHHHHHHHHHHHHHHH-CCTTB-ECS--SSSSBSSEEEEESS--HHHHHHHHTT----EEEGGG-SSEEEEE--TT-
T ss_pred HHHHHHHHHHHHHHHHHHH-HHhcC-ccc--CCCCceeeeeecCCc-HHHHHHHHHHHhcCCCccccCCCeEEEEccCCC
Confidence 345677788999999999 65421 111 111122222 22232 344456677777787666556679999999999
Q ss_pred CHHHHHHHHHHH
Q psy6548 219 TEQELREGLDII 230 (242)
Q Consensus 219 t~e~i~~~~~~l 230 (242)
|+||||++++.|
T Consensus 418 t~edid~lv~~f 429 (429)
T PF02347_consen 418 TKEDIDRLVEAF 429 (429)
T ss_dssp -HHHHHHHHH--
T ss_pred CHHHHHHHHhcC
Confidence 999999999864
No 359
>KOG3846|consensus
Probab=98.79 E-value=1e-06 Score=70.56 Aligned_cols=207 Identities=14% Similarity=0.182 Sum_probs=132.5
Q ss_pred CCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEE-ee-ccccCCc
Q psy6548 19 NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVI-LG-KALSGGL 96 (242)
Q Consensus 19 ~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~-~s-K~~~~g~ 96 (242)
.++++.|++.++|--+|+... +.+|-..-+..|+++=.|=+|+ +|+.. .-...| ..|+.+ .| |.+.+|-
T Consensus 212 gDeiA~v~fSGvqyYTGQ~Fd----i~aIT~Agq~kgc~VGfDLAHA-vgNVp--L~LHdW--gVDFACWCSYKYlnaGa 282 (465)
T KOG3846|consen 212 GDEIALVCFSGVQYYTGQYFD----IGAITFAGQFKGCLVGFDLAHA-VGNVP--LQLHDW--GVDFACWCSYKYLNAGA 282 (465)
T ss_pred CCeEEEEEeecceeecccccc----hhhhhhcccCCCcEechhhhhh-hcCCc--eEEeec--CCceEEEeeecccccCC
Confidence 468999999999999998765 7777766667789999998886 43332 222334 457766 33 7665220
Q ss_pred cchheeEeC-hhhhhccC-----------------------CCCCCCCCCCCHH-HHHHHHHHHHHHHh---ccHHHHHH
Q psy6548 97 YPISAVLAD-DEVMGTLV-----------------------PGTHGSTYGGNPL-ACKLAMTALDVILE---ENMIENAY 148 (242)
Q Consensus 97 ~~~g~~~~~-~~~~~~l~-----------------------~~~~~~~~~~~~~-~~~~a~a~l~~~~~---~~~~~~~~ 148 (242)
=++|..... +..-+... ++..+...+.+|+ ..++.+.+|++..+ .+++.+.-
T Consensus 283 GgIgGlFvHekh~~~~~prl~GWwgh~~s~RF~Mdnvl~lipGa~GfRiSNPpi~~v~al~~SLe~F~q~~~~~lRkrS~ 362 (465)
T KOG3846|consen 283 GGIGGLFVHEKHTKESLPRLAGWWGHDPSKRFQMDNVLELIPGALGFRISNPPIIDVVALRSSLELFAQFNINELRKRSL 362 (465)
T ss_pred CccceeeeehhhhcchhhHHhhhccCCcchhhhhccccccCccccccccCCCcHhHHHHHHhhHHHHHHhhHHHHhhhhh
Confidence 123333332 22221111 1123333344444 33444556777655 33444444
Q ss_pred HHHHHHHHHHHhhc-CCC-------------CCCeEeeeceeEEEEecCCchhHHHHHHHHHHCCceeccCCCCEEEEec
Q psy6548 149 KMGEIFRSELRSRL-SPD-------------IVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPISNNIIRLSP 214 (242)
Q Consensus 149 ~~~~~l~~~l~~~l-~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~lR~~~ 214 (242)
-+..++...+ +.. +.. .++.....|....+.+..+ ...+.+.|.++|+++-...++.||++|
T Consensus 363 lLTgYleyL~-k~~~g~~~~~rt~Kl~~~IiTP~~~~erGcQLsl~Fssp---~~~vfqeL~krGv~~DkR~PNvIRvAP 438 (465)
T KOG3846|consen 363 LLTGYLEYLL-KASKGYKHPLRTEKLFFTIITPTSTDERGCQLSLYFSSP---TPKVFQELHKRGVIGDKRRPNVIRVAP 438 (465)
T ss_pred hHHhHHHHHH-HHhcccCchhhhcceeEEEeCCcccccccceEEEEeCCC---chHHHHHHHHcCeeccccCCCceEeec
Confidence 5667777777 433 211 1223344566677777665 578999999999999888899999997
Q ss_pred -cCcCCHHHHHHHHHHHHHHHHHHh
Q psy6548 215 -ALNITEQELREGLDIIINTINTMA 238 (242)
Q Consensus 215 -~~~~t~e~i~~~~~~l~~~l~~~~ 238 (242)
+++++-.|+.++++.|.+++..+.
T Consensus 439 vpLYN~f~Dvy~f~n~L~e~~d~~e 463 (465)
T KOG3846|consen 439 VPLYNTFSDVYIFVNALNEAMDKLE 463 (465)
T ss_pred chhhccHHHHHHHHHHHHHHHHHhh
Confidence 899999999999999999988754
No 360
>cd01494 AAT_I Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis
Probab=98.74 E-value=5.1e-08 Score=72.87 Aligned_cols=81 Identities=26% Similarity=0.498 Sum_probs=60.6
Q ss_pred cCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEEee--cccc
Q psy6548 16 LKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILG--KALS 93 (242)
Q Consensus 16 ~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~s--K~~~ 93 (242)
...+.++++++++++++++|...+ +++++++|+++|+++|+|++|.++...... .......+|+++.| |+|+
T Consensus 87 ~~~~~~~~~v~~~~~~~~~g~~~~----~~~l~~~~~~~~~~li~D~a~~~~~~~~~~--~~~~~~~~d~~~~s~~K~~~ 160 (170)
T cd01494 87 LKAKPNVALIVITPNTTSGGVLVP----LKEIRKIAKEYGILLLVDAASAGGASPAPG--VLIPEGGADVVTFSLHKNLG 160 (170)
T ss_pred ccccCceEEEEEecCcCCCCeEcC----HHHHHHHHHHcCCEEEEecccccccccccc--cccccccCCEEEEEcccccC
Confidence 344678999999999999997776 589999999999999999999765332211 11223457888866 9998
Q ss_pred CCccchheeEe
Q psy6548 94 GGLYPISAVLA 104 (242)
Q Consensus 94 ~g~~~~g~~~~ 104 (242)
+ .++|++.+
T Consensus 161 ~--~~~G~l~~ 169 (170)
T cd01494 161 G--EGGGVVIV 169 (170)
T ss_pred C--CceEEEEe
Confidence 6 56788764
No 361
>COG1003 GcvP Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain [Amino acid transport and metabolism]
Probab=98.72 E-value=4e-06 Score=70.17 Aligned_cols=218 Identities=15% Similarity=0.142 Sum_probs=135.8
Q ss_pred Chhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEecccc-c-cCccCcccccccCCCCCCEEE
Q psy6548 11 QVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQT-G-LGRTGKLLAIHYEDVRPDIVI 87 (242)
Q Consensus 11 d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~-~-~~~~g~~~~~~~~~~~~~~~~ 87 (242)
|+++ +...+++++++.+..++.- | +. . +-+.+|+++.+++|.++..|.+.. . +|... ++ .+..|++-
T Consensus 193 DlddLk~k~~~~~AalMiTnPsT~-G-vF-E-~~I~ei~~ivH~~Gg~vY~DGANlNA~vG~~r-PG-----d~G~DV~H 262 (496)
T COG1003 193 DLDDLRAKAEDNLAALMITNPSTL-G-VF-E-EDIREICEIVHEAGGQVYYDGANLNAIVGLAR-PG-----DMGFDVVH 262 (496)
T ss_pred cHHHHHHHhccceeEEEeccCccc-c-cc-h-hhHHHHHHHHHHcCCEEEecCcchhhhhcccc-cc-----ccccceEE
Confidence 5666 5555688999888876443 4 33 2 459999999999999999999873 2 22111 11 23446665
Q ss_pred --eecccc-----CCccchheeEeChhhhhccCC----CC---------------CCCCCCCCHHHHHHHHHHHHHHHhc
Q psy6548 88 --LGKALS-----GGLYPISAVLADDEVMGTLVP----GT---------------HGSTYGGNPLACKLAMTALDVILEE 141 (242)
Q Consensus 88 --~sK~~~-----~g~~~~g~~~~~~~~~~~l~~----~~---------------~~~~~~~~~~~~~~a~a~l~~~~~~ 141 (242)
+-|+|+ || -+.|-+..++++..++-. .. ....+.+|......+++-+..+-.+
T Consensus 263 lNLHKTF~iPHGGGG-PG~GPvgVk~~L~pfLP~p~~~~~~~~y~~~~~~~~s~g~~~a~~Gs~~il~~a~~YI~~mG~~ 341 (496)
T COG1003 263 LNLHKTFCIPHGGGG-PGAGPVGVKAHLAPFLPGPVVYHDVGEYRLDYDGKKSIGVSAAPYGSASILPIAWAYIRMMGAD 341 (496)
T ss_pred eecccccccCCCCCC-CCCCceehHhhccccCCCCcccCCCccccccCCCCccceeeccccCcchHHHHHHHHHHHHhHH
Confidence 568776 45 667777777777765543 10 0112233444444455555544444
Q ss_pred cHH---HHHHHHHHHHHHHHHhhcCCCCCCeEeeeceeEEEEec----CCchhHHHHHHHHHHCCceeccC-----CCCE
Q psy6548 142 NMI---ENAYKMGEIFRSELRSRLSPDIVPVVRGKGLLNAIVLD----KSILEVYDVCIKMKDAGLVTKPI-----SNNI 209 (242)
Q Consensus 142 ~~~---~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~gi~~~~~-----~~~~ 209 (242)
++. +..--+++++..+|+....- ..........-+.++.. +.+..+.+++++|++.|+..-.. -.+.
T Consensus 342 GL~~ase~AvLNANYia~rL~~~y~~-~y~~~~~~~HE~ild~r~l~~~~Gv~~~DvAKrLlD~GfHaPT~~FPliV~~t 420 (496)
T COG1003 342 GLKQASEVAVLNANYIARRLKGYYPV-PYTGENRVAHECILDARPLKKETGVRALDVAKRLLDYGFHAPTMYFPLIVAGT 420 (496)
T ss_pred HHHHHHHHHHHhHHHHHHHhhhcCcc-ccCCCCcceeEEEeechHhHhhcCCcHHHHHHHHHhcCCCCCcccCccccccc
Confidence 432 33345788898888322221 11111112333444443 11267889999999999876321 3678
Q ss_pred EEEeccCcCCHHHHHHHHHHHHHHHHHHhhh
Q psy6548 210 IRLSPALNITEQELREGLDIIINTINTMAAK 240 (242)
Q Consensus 210 lR~~~~~~~t~e~i~~~~~~l~~~l~~~~~~ 240 (242)
+.+=|+-.-+++++|++++++.++.++..+.
T Consensus 421 LMIEPTEsEsk~eLDrf~dami~I~~Ea~~~ 451 (496)
T COG1003 421 LMIEPTESESKEELDRFIDAMIAIREEADAV 451 (496)
T ss_pred eeecCCCCCCHHHHHHHHHHHHHHHHHHHhc
Confidence 8998888899999999999999988876554
No 362
>TIGR00461 gcvP glycine dehydrogenase (decarboxylating). This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment.
Probab=98.62 E-value=4.7e-06 Score=77.32 Aligned_cols=194 Identities=9% Similarity=0.079 Sum_probs=118.9
Q ss_pred CEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEE-eecccc-----C
Q psy6548 21 NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVI-LGKALS-----G 94 (242)
Q Consensus 21 ~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~-~sK~~~-----~ 94 (242)
+++++++..++. .|.+- .+++|.++++++|++++++--...++-.-.+ . .+..|+++ .+|.|| |
T Consensus 194 ~~~~v~~q~Pn~-~G~ie----d~~~i~~~~h~~gal~~~~ad~~al~ll~~P---g--e~GaDi~vg~~q~fg~p~g~G 263 (939)
T TIGR00461 194 DVFGCLLQYPAT-DGSIL----DYKQLIDALHSHKSLVSVAADLMALTLLTPP---G--HYGADIVLGSSQRFGVPMGYG 263 (939)
T ss_pred CEEEEEEECCCC-CeEEe----cHHHHHHHHHHcCCEEEEEechHHhCCcCCH---H--HcCCcEEeeCCCccCCCCCCC
Confidence 577776665544 45444 3999999999999999986433222111111 1 23568877 446555 4
Q ss_pred CccchheeEeChhhhhccCCCCCCC----------------------------CCCCCHHHHHHHHHH--HHHHHhc---
Q psy6548 95 GLYPISAVLADDEVMGTLVPGTHGS----------------------------TYGGNPLACKLAMTA--LDVILEE--- 141 (242)
Q Consensus 95 g~~~~g~~~~~~~~~~~l~~~~~~~----------------------------~~~~~~~~~~~a~a~--l~~~~~~--- 141 (242)
| ...|++.+++++...+.....+. +...+...+ +..++ +.++-.+
T Consensus 264 G-P~aG~~a~~~~l~r~lPgrivG~s~D~~G~~~~~l~LqtReqhIrRekAtSNICt~qaL~-a~~a~~Y~~~~G~~GL~ 341 (939)
T TIGR00461 264 G-PHAAFFAVKDEYNRKMPGRIVGVSKDALGNTALRLALQTREQHIRRDKATSNICTAQVLL-ANVASSYCVYHGPKGLK 341 (939)
T ss_pred C-CceeeeeecHhhHhhCCCCceeEEecCCCCccceeecccccccccccccCcchhHHHHHH-HHHHHHHHHHHCHHHHH
Confidence 5 55888888888776665321110 001111111 11222 2233233
Q ss_pred cHHHHHHHHHHHHHHHHHhhcCCCCCCeEeeeceeEEEEecCCchhHHHHHHHHHHCCceeccCCCCEEEEeccCcCCHH
Q psy6548 142 NMIENAYKMGEIFRSELRSRLSPDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQ 221 (242)
Q Consensus 142 ~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~lR~~~~~~~t~e 221 (242)
++.+++..++.++.+.| +..+-..... .++-.+.+.-+..+++++.+.+.++||.++....+.++++++-.+|.+
T Consensus 342 ~iA~~~~~~a~~l~~~L-~~~G~~~~~~----~fF~~~~v~~~~~~~~~i~~~~~~~gi~l~~~~~~~i~~s~~E~~t~~ 416 (939)
T TIGR00461 342 NIARRIHSLTSILANGL-ENDPHELINK----TWFDTLTVKVGNGISSELLKAAEEFNINLRAVDTTTVGIALDETTTKA 416 (939)
T ss_pred HHHHHHHHHHHHHHHHH-HhCCCcccCC----CccceEEEEeCCCCHHHHHHHHHHCCCeeeecCCCEEEEEeecCCCHH
Confidence 34566777888889999 6655322221 223233322111357889999999999998776789999999999999
Q ss_pred HHHHHHHHHH
Q psy6548 222 ELREGLDIII 231 (242)
Q Consensus 222 ~i~~~~~~l~ 231 (242)
||+.+++.+.
T Consensus 417 di~~l~~~~~ 426 (939)
T TIGR00461 417 DVENLLKVFD 426 (939)
T ss_pred HHHHHHHHhc
Confidence 9999999994
No 363
>COG1448 TyrB Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]
Probab=98.55 E-value=7.1e-07 Score=73.55 Aligned_cols=199 Identities=15% Similarity=0.199 Sum_probs=116.4
Q ss_pred EEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCc--ccccccC-CCCCCEEE---eecccc-C
Q psy6548 22 ICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGK--LLAIHYE-DVRPDIVI---LGKALS-G 94 (242)
Q Consensus 22 ~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~--~~~~~~~-~~~~~~~~---~sK~~~-~ 94 (242)
...++-..-||||| +-++.+-+++|.++.++.+.+-++|=+|-||+.... ......+ ...+.+.+ +||.|| =
T Consensus 173 ~vvLLH~CcHNPTG-~D~t~~qW~~l~~~~~~r~lip~~D~AYQGF~~GleeDa~~lR~~a~~~~~~lva~S~SKnfgLY 251 (396)
T COG1448 173 SVVLLHGCCHNPTG-IDPTEEQWQELADLIKERGLIPFFDIAYQGFADGLEEDAYALRLFAEVGPELLVASSFSKNFGLY 251 (396)
T ss_pred CEEEEecCCCCCCC-CCCCHHHHHHHHHHHHHcCCeeeeehhhhhhccchHHHHHHHHHHHHhCCcEEEEehhhhhhhhh
Confidence 34455555799999 666788899999999999999999999998853322 1111111 22344444 889999 4
Q ss_pred CccchheeE---eChhhhhccCCC---CCCCCCCCCHH-HHHHHHHHH-----H-HHHh--ccHHHHHHHHHHHHHHHHH
Q psy6548 95 GLYPISAVL---ADDEVMGTLVPG---THGSTYGGNPL-ACKLAMTAL-----D-VILE--ENMIENAYKMGEIFRSELR 159 (242)
Q Consensus 95 g~~~~g~~~---~~~~~~~~l~~~---~~~~~~~~~~~-~~~~a~a~l-----~-~~~~--~~~~~~~~~~~~~l~~~l~ 159 (242)
| -|+|.+. -+++...++... ..-.+|+.+|- .+......| + .++. .++++++.++++.+.+.|
T Consensus 252 g-ERVGa~~vva~~~~~a~~v~sqlk~~iR~~ySnPP~~Ga~vva~IL~~p~Lra~W~~El~~Mr~Ri~~mR~~lv~~L- 329 (396)
T COG1448 252 G-ERVGALSVVAEDAEEADRVLSQLKAIIRTNYSNPPAHGAAVVATILNNPELRAEWEQELEEMRQRILEMRQALVDAL- 329 (396)
T ss_pred h-hccceeEEEeCCHHHHHHHHHHHHHHHHhccCCCchhhHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 4 6777643 234444433321 12234443331 111111111 1 1111 356788888999999999
Q ss_pred hhcCC--CCCCeEeeeceeEEEEecCCchhHHHHHHHHHHCCceeccCCCCEEEEeccCcCCHHHHHHHHHHHHHH
Q psy6548 160 SRLSP--DIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINT 233 (242)
Q Consensus 160 ~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~lR~~~~~~~t~e~i~~~~~~l~~~ 233 (242)
+.... .+..-....|++... . ...+++-+...+.||++...| |+++... ++..++.+.+.|.++
T Consensus 330 ~~~~~~~~f~~i~~Q~GMFsy~---G--ls~~QV~rLree~~IY~v~sG----Ri~vaGl-~~~ni~~va~ai~~v 395 (396)
T COG1448 330 KALGAPRNFDFIISQRGMFSYT---G--LSPEQVDRLREEFGIYLVASG----RINVAGL-NTSNIDYVAKAIAAV 395 (396)
T ss_pred HhhCCCcccchHhhcCceeecC---C--CCHHHHHHHHHhccEEEecCC----eeeeccC-ChhhHHHHHHHHHhh
Confidence 55432 222222334443332 2 234554444446799887754 7776544 778999999888765
No 364
>PF04864 Alliinase_C: Allinase; InterPro: IPR006948 Allicin is a thiosulphinate that gives rise to dithiines, allyl sulphides and ajoenes, the three groups of active compounds in Allium species. Allicin is synthesised from sulphoxide cysteine derivatives by alliinase, whose C-S lyase activity cleaves C(beta)-S(gamma) bonds. It is thought that this enzyme forms part of a primitive plant defence system [].; GO: 0016846 carbon-sulfur lyase activity; PDB: 1LK9_B 2HOX_C 2HOR_A 3BWO_D 3BWN_B.
Probab=98.45 E-value=2.1e-06 Score=70.00 Aligned_cols=193 Identities=17% Similarity=0.160 Sum_probs=107.3
Q ss_pred CCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEE--eecccc-CCc
Q psy6548 20 PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVI--LGKALS-GGL 96 (242)
Q Consensus 20 ~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~--~sK~~~-~g~ 96 (242)
...-+=+|.+++||.|.+-- .+.+.-+..+|.|-+| ++++-.+... ..+.|+.. +||.-| +|
T Consensus 136 ~~~~IElVTSPNNPDG~lr~---------~V~~g~~~k~I~D~AY--YWPhyTpI~~---~aD~DiMLFT~SK~TGHAG- 200 (363)
T PF04864_consen 136 PSPYIELVTSPNNPDGQLRE---------AVLNGSSGKVIHDLAY--YWPHYTPITA---PADHDIMLFTLSKLTGHAG- 200 (363)
T ss_dssp CCGEEEEEESS-TTT---------------SSTTTEEEEEEE-TT---STTTS---S----B--SEEEEEHHHHCS-GG-
T ss_pred CCCeEEEEeCCCCCcccccc---------hhcCCCCcceeeeeee--ecccccccCC---CCCCceEEEEEecccCccc-
Confidence 35666778888898885431 2334556678999877 3444333221 12446555 789999 88
Q ss_pred cchheeEeC-hhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHh----c----cH----HHHHHHHHHHHHHHHHhhcC
Q psy6548 97 YPISAVLAD-DEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILE----E----NM----IENAYKMGEIFRSELRSRLS 163 (242)
Q Consensus 97 ~~~g~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~----~----~~----~~~~~~~~~~l~~~l~~~l~ 163 (242)
.|+||.+.+ +++.+.+.......|.+.+-=++.-++..|+.+.+ + ++ .+.++++-.+|++.+ ..-.
T Consensus 201 SR~GWAlVKD~~Va~kM~~y~~lnTiGvS~dsQLRa~kiLk~v~~~~~~~~~~~~~F~f~~~~M~~RW~~L~~~~-~~S~ 279 (363)
T PF04864_consen 201 SRFGWALVKDEEVAKKMTKYMELNTIGVSRDSQLRALKILKVVLDGYGTEKGTEDIFHFGYSTMRERWEKLRAAV-SASK 279 (363)
T ss_dssp G-EEEEEES-HHHHHHHHHHHHHHCSS--HHHHHHHHHHHHHHHHHCCHHTTTTSHHHHHHHHHHHHHHHHHHHH-CCSS
T ss_pred cccceeeecCHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHhcccCCCCccchHHHHHHHHHHHHHHHHHHH-HhcC
Confidence 999999887 55666666544445556565555555555554422 1 23 234444445555555 2211
Q ss_pred C-----------C-CCCeEeeeceeEEEEecCCchhHHHHHHHHHHCCceeccC-----CCCEEEEeccCcCCHHHHHHH
Q psy6548 164 P-----------D-IVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPI-----SNNIIRLSPALNITEQELREG 226 (242)
Q Consensus 164 ~-----------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~-----~~~~lR~~~~~~~t~e~i~~~ 226 (242)
. . ......+...+.|+....+ . -++-...|++.||+.+.+ +..++|++ ...++++.+.+
T Consensus 280 rFSLq~~~~~yC~ff~~~~~psPafAWlkCe~e-e-d~DC~~~l~~~~I~tr~G~~fga~~ryVRlS--ml~~~d~Fd~l 355 (363)
T PF04864_consen 280 RFSLQKFSPQYCNFFKRVREPSPAFAWLKCERE-E-DEDCYAVLREAKIITRSGVLFGADSRYVRLS--MLKRDDDFDQL 355 (363)
T ss_dssp SEEE---SCEEETTTTCEEE---SEEEEEESSC-G-GSSHHHHHHCTTEEEEEGGGGTS-TTEEEEE--SSS-HHHHHHH
T ss_pred ceecCcCCchhccccccccCCCCCeEEEecCCc-c-cccHHHHHHhCCcccCCCCccCCCCCeEEEe--ccCCHHHHHHH
Confidence 0 1 1112233467888888765 2 233445667889888765 67899999 88899999999
Q ss_pred HHHHHH
Q psy6548 227 LDIIIN 232 (242)
Q Consensus 227 ~~~l~~ 232 (242)
+++|.+
T Consensus 356 ~~rL~~ 361 (363)
T PF04864_consen 356 LERLSK 361 (363)
T ss_dssp HHHHHC
T ss_pred HHHHHh
Confidence 999864
No 365
>PRK15029 arginine decarboxylase; Provisional
Probab=98.45 E-value=3e-05 Score=70.88 Aligned_cols=189 Identities=14% Similarity=0.078 Sum_probs=106.9
Q ss_pred HHHHHHHHHhhCCEEEEeccccc-cCccCccccc-ccC-----C-CCCC-EEE--eeccccCCccchheeEeChh--hh-
Q psy6548 44 LKKVRALCSQYNVLFIADEVQTG-LGRTGKLLAI-HYE-----D-VRPD-IVI--LGKALSGGLYPISAVLADDE--VM- 109 (242)
Q Consensus 44 l~~l~~l~~~~~~~li~De~~~~-~~~~g~~~~~-~~~-----~-~~~~-~~~--~sK~~~~g~~~~g~~~~~~~--~~- 109 (242)
+++|+++|++++++|++||+|.. |+.+. .+.. ... . ..+| +++ .-|.+++- -..+++-.+.. .+
T Consensus 330 i~~I~~~~h~~~~~llvDEAhGah~~F~~-~~p~~sa~~~~~~~~~Gad~~vvqStHKtL~al-TQaS~LHv~~~~~~id 407 (755)
T PRK15029 330 AKEAQDLLEKTSDRLHFDEAWYGYARFNP-IYADHYAMRGEPGDHNGPTVFATHSTHKLLNAL-SQASYIHVREGRGAIN 407 (755)
T ss_pred HHHHHHHHHhcCCeEEEECccccccccCc-cccccccccccccccCCCceEEEEchhhcccch-hhhhhheeCCCccccC
Confidence 99999999999999999999955 33332 1210 111 1 3467 666 44988742 23344333211 11
Q ss_pred -hccCCC-CCCCCCCCCHHHHHHHHHHHHHHHh---ccHHHHHHHHHHHHHHHHHhhcCCC----------------C--
Q psy6548 110 -GTLVPG-THGSTYGGNPLACKLAMTALDVILE---ENMIENAYKMGEIFRSELRSRLSPD----------------I-- 166 (242)
Q Consensus 110 -~~l~~~-~~~~~~~~~~~~~~~a~a~l~~~~~---~~~~~~~~~~~~~l~~~l~~~l~~~----------------~-- 166 (242)
+++... ...+|-|.+.+.++..-.+.+.++. +++.+...+....+|+.+ +.+... +
T Consensus 408 ~~r~~~~l~~~qSTSPSY~LmASLD~ar~~m~~~~G~~l~~~~i~~~~~~r~~l-~~~~~~~~~~~~~~~~~~~~~~v~~ 486 (755)
T PRK15029 408 FSRFNQAYMMHATTSPLYAICASNDVAVSMMDGNSGLSLTQEVIDEAVDFRQAM-ARLYKEFTADGSWFFKPWNKEVVTD 486 (755)
T ss_pred HHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH-HhccccccccccccccccCcccccc
Confidence 122211 1222334444455444444455543 234566667777777777 444310 0
Q ss_pred ----------------------CCeE-e-----e-----------eceeEEEEecCCchh---------HHHHHHHHHHC
Q psy6548 167 ----------------------VPVV-R-----G-----------KGLLNAIVLDKSILE---------VYDVCIKMKDA 198 (242)
Q Consensus 167 ----------------------~~~~-~-----~-----------~~~~~~~~~~~~~~~---------~~~~~~~l~~~ 198 (242)
.+.. + + .-.-+.+..+..+.. +.++.+.|.++
T Consensus 487 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~lDp~Klti~~~~~g~sG~~~~~gip~~~l~~~L~~~ 566 (755)
T PRK15029 487 PQTGKTYDFADAPTKLLTTVQDCWVMHPGESWHGFKDLPDNWSMLDPIKVSILAPGMGEDGELEETGVPAALVTAWLGRH 566 (755)
T ss_pred ccccccccccccchhhhccccceeeecccccccCcccccccccccCCceEEEEcCCCCCCCcccccCCcHHHHHHHHHHc
Confidence 0000 0 0 001112222221122 33788999889
Q ss_pred CceeccCCCCEEEEeccCcCCHHHHHHHHHHHHHHHH
Q psy6548 199 GLVTKPISNNIIRLSPALNITEQELREGLDIIINTIN 235 (242)
Q Consensus 199 gi~~~~~~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~ 235 (242)
||.+--.+...+=+.++...|+++++++++.|.+..+
T Consensus 567 gI~~E~~~~~~vL~l~s~g~t~~~~~~L~~aL~~~~~ 603 (755)
T PRK15029 567 GIVPTRTTDFQIMFLFSMGVTRGKWGTLVNTLCSFKR 603 (755)
T ss_pred CCEEEecCCCeEEEEeCCCCCHHHHHHHHHHHHHHHH
Confidence 9999888888888888889999999999999987744
No 366
>COG1921 SelA Selenocysteine synthase [seryl-tRNASer selenium transferase] [Amino acid transport and metabolism]
Probab=98.37 E-value=2.8e-06 Score=70.92 Aligned_cols=119 Identities=15% Similarity=0.145 Sum_probs=79.6
Q ss_pred hcCCCCCEEEEE--EcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEEee--c
Q psy6548 15 KLKSNPNICAFM--VEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILG--K 90 (242)
Q Consensus 15 ~~~~~~~~~~i~--~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~s--K 90 (242)
+.+.+.++++++ ..+.+..+|... +++++++|++||+++++|.+-....+ ..+...+.....+|+++|| |
T Consensus 150 ~~AIne~ta~llkV~s~~~~f~~~l~-----~~~l~~ia~~~~lpvivD~aSg~~v~-~e~~l~~~la~GaDLV~~SgdK 223 (395)
T COG1921 150 ELAINENTALLLKVHSSNYGFTGMLS-----EEELVEIAHEKGLPVIVDLASGALVD-KEPDLREALALGADLVSFSGDK 223 (395)
T ss_pred HHHhccCCeeEEEEeecccccccccc-----HHHHHHHHHHcCCCEEEecCCccccc-cccchhHHHhcCCCEEEEecch
Confidence 444444444432 333334555433 78899999999999999986532211 1111222234578999988 8
Q ss_pred cccCCccchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHhc
Q psy6548 91 ALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEE 141 (242)
Q Consensus 91 ~~~~g~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~~ 141 (242)
-|+|+ +.|.++|++++++.+++......+-.....+++..++|+.+..+
T Consensus 224 llgGP--qaGii~GkKelI~~lq~~~l~Ralrv~K~tla~l~~aLe~y~~~ 272 (395)
T COG1921 224 LLGGP--QAGIIVGKKELIEKLQSHPLKRALRVDKETLAALEAALELYLQP 272 (395)
T ss_pred hcCCC--ccceEechHHHHHHHHhhhhhhhhhcCcHhHHHHHHHHHHHcCc
Confidence 88874 68999999999999987545555556677788888888887764
No 367
>TIGR02617 tnaA_trp_ase tryptophanase, leader peptide-associated. Members of this family belong to the beta-eliminating lyase family (pfam01212) and act as tryptophanase (L-tryptophan indole-lyase). The tryptophanases of this family, as a rule, are found with a tryptophanase leader peptide (TnaC) encoded upstream. Both tryptophanases (4.1.99.1) and tyrosine phenol-lyases (EC 4.1.99.2) are found between trusted and noise cutoffs, but this model captures nearly all tryptophanases for which the leader peptide gene tnaC can be found upstream.
Probab=98.32 E-value=6.8e-05 Score=64.05 Aligned_cols=210 Identities=12% Similarity=0.105 Sum_probs=120.2
Q ss_pred CCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccc----c------CccCcccc--cccCCCCCCEEE
Q psy6548 20 PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTG----L------GRTGKLLA--IHYEDVRPDIVI 87 (242)
Q Consensus 20 ~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~----~------~~~g~~~~--~~~~~~~~~~~~ 87 (242)
+++..+.+.-.+|..|+.+.+.+.++++.++|++||+.++.|.+-.. | +..+.... ....--..|.++
T Consensus 182 ~~i~~v~~tlt~N~~GGqpvslenlr~V~~la~~~GIplhLDgARl~nNA~fIk~rE~~a~~~si~eI~rE~~~~aDsvt 261 (467)
T TIGR02617 182 NNVPYIVATITCNSAGGQPVSLANLKAVYEIAKKYDIPVVMDSARFAENAYFIKQREAEYKNWSIEQITRETYKYADMLA 261 (467)
T ss_pred CCceeeeeeEEEecCCCEEeCHHHHHHHHHHHHHcCCcEEEEhHHHHHHhhhhhhcchhhcCCCHHHHHHHhhccCCEEE
Confidence 45667777767777788888999999999999999999999987621 1 11111110 000001245444
Q ss_pred --eeccccCCccchh-eeEeChh----hhhccCCC----CCCCCCCC-CHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Q psy6548 88 --LGKALSGGLYPIS-AVLADDE----VMGTLVPG----THGSTYGG-NPLACKLAMTALDVILEENMIENAYKMGEIFR 155 (242)
Q Consensus 88 --~sK~~~~g~~~~g-~~~~~~~----~~~~l~~~----~~~~~~~~-~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~ 155 (242)
+||.+++. +| ++.++++ +.+..+.. .-..|+++ +.--+.+....|+...++++..+--.-.++|.
T Consensus 262 ~slsKglgAp---vGg~Lag~d~~~~~l~~~~~~~~i~~EGf~tYGGlagrd~ea~a~Gl~e~~~~~yl~~ri~qv~yl~ 338 (467)
T TIGR02617 262 MSAKKDAMVP---MGGLLCFKDDSFFDVYTECRTLCVVQEGFPTYGGLEGGAMERLAVGLYDGMNLDWLAYRINQVQYLV 338 (467)
T ss_pred EEcCCCCCCc---ccceEEecchhHHHHHHHHHhhcccccCCcCcCchhHHHHHHHHhhhhhcccHHHHHHHHHHHHHHH
Confidence 77999943 34 4556543 34444332 11223432 22222222223444434555555556667788
Q ss_pred HHHHhhcCCCCCCeEeeeceeEEEE-------ecCCchhHHHHHHHHHHC-Cceec----------cC-------CCCEE
Q psy6548 156 SELRSRLSPDIVPVVRGKGLLNAIV-------LDKSILEVYDVCIKMKDA-GLVTK----------PI-------SNNII 210 (242)
Q Consensus 156 ~~l~~~l~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~l~~~-gi~~~----------~~-------~~~~l 210 (242)
+.| .+.+ ++... ..|+-+.++ ++..+.-+..++-.|..+ ||=.. |. .-..+
T Consensus 339 ~~L-~~~G--vpi~~-~Gghav~iDa~~~lphip~~~fpa~al~~~ly~~~GiR~~e~G~~~~~rd~~~~~~~~~~~el~ 414 (467)
T TIGR02617 339 NGL-EEIG--VVCQQ-AGGHAAFVDAGKLLPHIPADQFPAHALACELYKVAGIRAVEIGSLLLGRDPKTGKQLPCPAELL 414 (467)
T ss_pred HHH-HhCC--CcEEe-cCccEEEEehhhhCCCCChhhCcHHHHHHHHHHHcCcceEeecceecccCCCCCccCCCcccee
Confidence 888 5544 33333 445555553 233324566777777643 43321 10 12579
Q ss_pred EEec-cCcCCHHHHHHHHHHHHHHHHH
Q psy6548 211 RLSP-ALNITEQELREGLDIIINTINT 236 (242)
Q Consensus 211 R~~~-~~~~t~e~i~~~~~~l~~~l~~ 236 (242)
|++. .-.-|.+++|...+++..+.++
T Consensus 415 RlaipRrvyt~~h~d~v~~~~~~~~~~ 441 (467)
T TIGR02617 415 RLTIPRATYTQTHMDFIIEAFKHVKEN 441 (467)
T ss_pred eeccccccccHhHHHHHHHHHHHHHhh
Confidence 9974 4556999999999999887765
No 368
>PF01276 OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain; InterPro: IPR000310 Pyridoxal-dependent decarboxylases are bacterial proteins acting on ornithine, lysine, arginine and related substrates []. One of the regions of sequence similarity contains a conserved lysine residue, which is the site of attachment of the pyridoxal-phosphate group.; GO: 0003824 catalytic activity; PDB: 1C4K_A 1ORD_A 2X3L_B 3Q16_C 3N75_A 2VYC_D.
Probab=98.26 E-value=4.1e-05 Score=65.30 Aligned_cols=188 Identities=18% Similarity=0.190 Sum_probs=98.5
Q ss_pred EEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccc-cCccCcccccccCCCCCC-------EEEee--cccc
Q psy6548 24 AFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTG-LGRTGKLLAIHYEDVRPD-------IVILG--KALS 93 (242)
Q Consensus 24 ~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~-~~~~g~~~~~~~~~~~~~-------~~~~s--K~~~ 93 (242)
++++.|.+ .|.... +++|+++|++++.+|++||+|.. ++.. . +.........| +++-| |.++
T Consensus 172 vvlt~PTY--~Gv~~d----i~~I~~~~h~~~~~llvDEAhGah~~F~-~-lp~~a~~~gad~~~~~~~~vvqS~HKtL~ 243 (417)
T PF01276_consen 172 VVLTSPTY--YGVCYD----IKEIAEICHKHGIPLLVDEAHGAHFGFH-P-LPRSALALGADRPNDPGIIVVQSTHKTLP 243 (417)
T ss_dssp EEEESS-T--TSEEE-----HHHHHHHHCCTECEEEEE-TT-TTGGCS-G-GGTTCSSTTSS-CTSBEEEEEEEHHHHSS
T ss_pred EEEeCCCC--CeEEEC----HHHHHHHhcccCCEEEEEccccccccCC-C-CccchhhccCccccccceeeeechhhccc
Confidence 45555533 353443 99999999999999999999955 4333 2 22233455666 77754 9888
Q ss_pred CCccchheeEeChhh---hhccCCC-CCCCCCCCCHHHHHHHHHHHHHH-Hh--ccHHHHHHHHHHHHHHHHHhhcCCC-
Q psy6548 94 GGLYPISAVLADDEV---MGTLVPG-THGSTYGGNPLACKLAMTALDVI-LE--ENMIENAYKMGEIFRSELRSRLSPD- 165 (242)
Q Consensus 94 ~g~~~~g~~~~~~~~---~~~l~~~-~~~~~~~~~~~~~~~a~a~l~~~-~~--~~~~~~~~~~~~~l~~~l~~~l~~~- 165 (242)
+- -..+++-.+... .++++.. ..-+|-+.+.+.++..-.+.+.+ .. +.+.++..++...+|+.| +.+...
T Consensus 244 al-tQts~lh~~~~~~v~~~~~~~~l~~~~TTSPSY~lmASlD~a~~~m~~~~G~~l~~~~i~~a~~~R~~i-~~~~~~~ 321 (417)
T PF01276_consen 244 AL-TQTSMLHVKGDRIVDHERVNEALSMHQTTSPSYPLMASLDVARAQMEEEEGRELLEEAIELAEEFRKKI-NRLNDIW 321 (417)
T ss_dssp S--TT-EEEEEETCCCTTHHHHHHHHHHHS-SS--HHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHH-HHHCCT-
T ss_pred cc-ccceEEEecCCCcccHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH-HhcCCCc
Confidence 53 445555444321 1222221 12233355555655555555666 22 346677777888888888 433320
Q ss_pred --CCC---eEeeec-------------------------eeEEEEec---------CCchhHHHHHHHHHHCCceeccCC
Q psy6548 166 --IVP---VVRGKG-------------------------LLNAIVLD---------KSILEVYDVCIKMKDAGLVTKPIS 206 (242)
Q Consensus 166 --~~~---~~~~~~-------------------------~~~~~~~~---------~~~~~~~~~~~~l~~~gi~~~~~~ 206 (242)
.+. .....+ .-+.+..+ +.+..+..+.++|.++||.+--.+
T Consensus 322 ~~~~~~~~~v~~~~~~~~~~~~~whgf~~~~~~~~~lDP~K~ti~~pG~~~~g~~~~~Gi~g~~~~~~L~~~~I~~Ek~d 401 (417)
T PF01276_consen 322 GFKVLGPEDVGGEGCWDLDPGENWHGFEGLADDYYMLDPTKLTINTPGIDADGELSELGIPGYIVEKYLREHGIQVEKTD 401 (417)
T ss_dssp SSEESS-SEECTCCGCB--TT-TTT--TT--TTSEEE-TTEEEEE-STBETTSSB-SS---HHHHHHHHHHTTEE-SEEE
T ss_pred eEecCCccccCCccccccCccccchhchhcccCccccCCcEEEEEccCcCcCCcccccCCCHHHHHHHHHHcCCEEEecc
Confidence 001 011110 11223331 222567788999999999998777
Q ss_pred CCEEEEeccCcCCHH
Q psy6548 207 NNIIRLSPALNITEQ 221 (242)
Q Consensus 207 ~~~lR~~~~~~~t~e 221 (242)
...+=+-.+...|++
T Consensus 402 ~~~vL~l~t~G~t~~ 416 (417)
T PF01276_consen 402 LYNVLFLFTIGDTKE 416 (417)
T ss_dssp SSEEEEE--TTS-HH
T ss_pred CccEEEEecCCCCCC
Confidence 777777666665553
No 369
>KOG0258|consensus
Probab=98.24 E-value=2e-05 Score=65.16 Aligned_cols=206 Identities=16% Similarity=0.174 Sum_probs=111.0
Q ss_pred CCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccc-cCccC-ccccc----ccCC-CCC---CEEE-
Q psy6548 19 NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTG-LGRTG-KLLAI----HYED-VRP---DIVI- 87 (242)
Q Consensus 19 ~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~-~~~~g-~~~~~----~~~~-~~~---~~~~- 87 (242)
.=+++++++-++.|++|+ +.+++-+++|..+|.+++++++.||+|-+ ++..+ +..++ .+.+ ..+ ..++
T Consensus 213 ~i~~r~lvvINPGNPTGq-vls~e~ie~i~~fa~~~~l~llaDEVYQ~Nvy~~~skFhSfKKvl~emg~~~~~~v~L~Sf 291 (475)
T KOG0258|consen 213 GINPRALVVINPGNPTGQ-VLSEENIEGIICFAAEEGLVLLADEVYQDNVYTTGSKFHSFKKVLHEMGNPYPDNVSLASF 291 (475)
T ss_pred cCCceEEEEECCCCccch-hhcHHHHHHHHHHHHHcCeEEechHHHHhhccCCCcchHhHHHHHHHhcCccCCceEEEee
Confidence 335666666666677885 55788999999999999999999999965 33333 22222 1122 122 2333
Q ss_pred --eecccc--CCccchheeEe---ChhhhhccCCC---CCCCCC--------CCCHHHHHHHHHHHHHH--HhccHHHHH
Q psy6548 88 --LGKALS--GGLYPISAVLA---DDEVMGTLVPG---THGSTY--------GGNPLACKLAMTALDVI--LEENMIENA 147 (242)
Q Consensus 88 --~sK~~~--~g~~~~g~~~~---~~~~~~~l~~~---~~~~~~--------~~~~~~~~~a~a~l~~~--~~~~~~~~~ 147 (242)
.||++. .| .|.||+-. +++..+.+.+. ....+- -.+|+-- +-...+.. +.+.+...+
T Consensus 292 hSvSKGy~gECG-~RGGYmEv~n~~prv~~qi~Kl~si~lc~~V~GQ~~vdl~VnPP~P--gd~Sy~~~~~Ekd~il~~l 368 (475)
T KOG0258|consen 292 HSVSKGYMGECG-QRGGYMESLNRDPRVKQQIKKLASIKLCPQVSGQKLVDLVVNPPKP--GDPSYDLFSSEKDGILSSL 368 (475)
T ss_pred ecccccceeeec-ccCCeeecccCChhHHHHHHHHHhhhhcCCccchhhhceecCCCCC--CCcchhhhhhhhHhHHHHH
Confidence 678877 68 78898753 34444444321 000000 0011000 01111111 234567778
Q ss_pred HHHHHHHHHHHHhhcCCCCCCeEeeeceeEE---EEecCCc--------hhHHH-HHHHHHH-CCceeccC-------CC
Q psy6548 148 YKMGEIFRSELRSRLSPDIVPVVRGKGLLNA---IVLDKSI--------LEVYD-VCIKMKD-AGLVTKPI-------SN 207 (242)
Q Consensus 148 ~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~---~~~~~~~--------~~~~~-~~~~l~~-~gi~~~~~-------~~ 207 (242)
++.++.+.+.+ +.+....+. +..|.|.. +.+|..- ...+. .+..|++ -||.+.|+ |.
T Consensus 369 ~~ra~l~~~~~-ns~~gi~cn--~~qGAMY~fP~i~lP~kaie~A~~~~~~PD~FYc~~LLe~tGIcvVPGSGFGQ~~Gt 445 (475)
T KOG0258|consen 369 RSRAKLTEDAF-NSLEGISCN--PVQGAMYLFPQISLPPKAIEAAKALGIAPDEFYCLKLLEATGICVVPGSGFGQKEGT 445 (475)
T ss_pred HHHhHHHHHHH-hhcCceeec--cCccceeecccccCCHHHHHHHHHhCCCCcHHHHHHHHHhcCeEEecCCCCCCCCce
Confidence 88888888888 777642222 33344444 3333321 11122 2444554 59999987 34
Q ss_pred CEEEEeccCcCCHHHHHHHHHHHHHHHHH
Q psy6548 208 NIIRLSPALNITEQELREGLDIIINTINT 236 (242)
Q Consensus 208 ~~lR~~~~~~~t~e~i~~~~~~l~~~l~~ 236 (242)
.++|.+. ...+ + +.++++.+.-++
T Consensus 446 yH~R~Ti---Lp~~-~-~~i~~~~~fH~~ 469 (475)
T KOG0258|consen 446 YHFRTTI---LPPG-L-EIIEKFKKFHAE 469 (475)
T ss_pred eEEEEee---cCch-h-HHHHHHHHHHHH
Confidence 5788872 2222 3 555666555444
No 370
>COG0076 GadB Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism]
Probab=98.23 E-value=2.4e-05 Score=67.93 Aligned_cols=170 Identities=12% Similarity=0.092 Sum_probs=97.6
Q ss_pred EEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCc-cCcccccc-cCCC-CCCEEE--eeccccCCccch
Q psy6548 25 FMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGR-TGKLLAIH-YEDV-RPDIVI--LGKALSGGLYPI 99 (242)
Q Consensus 25 i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~-~g~~~~~~-~~~~-~~~~~~--~sK~~~~g~~~~ 99 (242)
|+..-...++|.+=| +++|.++|++|++++.+|.++.|+.. .... ... .+++ ..|-++ +-|.+..+ +++
T Consensus 211 vV~~aGtT~~G~iDd----i~~ia~ia~~~~i~lHVDAA~GG~~~pf~~~-~~~~~f~l~~vdSIt~d~HK~g~aP-~~~ 284 (460)
T COG0076 211 VVGTAGTTDTGSIDD----IEELADIAEEYGIWLHVDAAFGGFLLPFLEP-DGRWDFGLEGVDSITVDGHKYGLAP-IGC 284 (460)
T ss_pred EEEEecCCCCCccCC----HHHHHHHHHHcCCcEEEEccccceeecccCc-cchhhcCCCCceEEEECcccccCCC-CCc
Confidence 444444444564333 99999999999999999999987522 1111 101 1222 335444 55988887 899
Q ss_pred heeEeChh--hhhccCC--CCCC----CCC----CCCHHHHHHHHHHHHHHHhcc---HHHHHHHHHHHHHHHHHhhcCC
Q psy6548 100 SAVLADDE--VMGTLVP--GTHG----STY----GGNPLACKLAMTALDVILEEN---MIENAYKMGEIFRSELRSRLSP 164 (242)
Q Consensus 100 g~~~~~~~--~~~~l~~--~~~~----~~~----~~~~~~~~~a~a~l~~~~~~~---~~~~~~~~~~~l~~~l~~~l~~ 164 (242)
|+++..++ +.+.+.- .... .++ +.+.....++++.++.+-.++ +.++..++++++.+.| +..+.
T Consensus 285 G~il~rd~e~l~~~~~~~~~yl~~~~~~~~ti~~sr~~~~~~~~~~~l~~lG~eGy~~l~~~~~~~a~~la~~l-~~~~~ 363 (460)
T COG0076 285 GVVLFRDEEALRRILIFADYYLPGGGIPNFTILGSRPGRQALALYANLRRLGREGYRKLLDRTLELARYLAEEL-EKLGD 363 (460)
T ss_pred eEEEEECHHHhhhhhhcccccCCCCCcCceeEeeccchHHHHHHHHHHHHhCHhHHHHHHHHHHHHHHHHHHHH-HhCCC
Confidence 99987644 3333321 1111 111 122224445566666664444 4455558889999999 66542
Q ss_pred CCCCeEeeeceeEEEEecCCchh-HHHHHHHHHHCCceec
Q psy6548 165 DIVPVVRGKGLLNAIVLDKSILE-VYDVCIKMKDAGLVTK 203 (242)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~gi~~~ 203 (242)
+....++..+.+.+..++. .+ ..+....+.+.|..+.
T Consensus 364 -~e~~~~p~l~~V~fr~~~~-~~~~~~~~~~~~~~gw~v~ 401 (460)
T COG0076 364 -FELVNEPELPIVAFRLKDD-EDTLADLSERLDRRGWQVP 401 (460)
T ss_pred -cEeecCCccceEEEEcCCc-ccchhchHHHHHhcCceee
Confidence 1222233567778887553 23 4455566666776664
No 371
>PF03841 SelA: L-seryl-tRNA selenium transferase; InterPro: IPR018319 In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This family describes SelA. A close homologue of SelA is found in Helicobacter pylori, but all other required elements are missing and the protein is shorter at the N terminus than SelA from other species. The trusted cut-off is set above the score generated for Helicobacter pylori putative SelA.; PDB: 2AEV_A 2AEU_A.
Probab=98.19 E-value=2.6e-06 Score=70.50 Aligned_cols=123 Identities=16% Similarity=0.159 Sum_probs=53.8
Q ss_pred hhh-hcCCCCCEEEEEEcc--cccCCC-cccCCHHHHHHHHHHHHhhCCEEEEeccccc------cCccCcccccccCCC
Q psy6548 12 VPA-KLKSNPNICAFMVEP--IQGEAG-AVVPDDGYLKKVRALCSQYNVLFIADEVQTG------LGRTGKLLAIHYEDV 81 (242)
Q Consensus 12 ~~~-~~~~~~~~~~i~~e~--~~~~~G-~~~~~~~~l~~l~~l~~~~~~~li~De~~~~------~~~~g~~~~~~~~~~ 81 (242)
+++ +...+++|++++--. .+...| .-.++ ++++++++++|++++|+|-.-.. ++..+++-..+....
T Consensus 126 ~~Dye~AI~e~Ta~ll~Vh~Sn~~i~GFt~~~~---~~el~~la~~~~lp~i~DlgsG~l~dl~~~gl~~Ep~v~~~~~~ 202 (367)
T PF03841_consen 126 LSDYEKAITENTAALLKVHTSNFRIQGFTGEVS---LEELAELAKEHGLPVIVDLGSGLLVDLSPYGLPDEPTVQEYLAA 202 (367)
T ss_dssp --------------------------------------HHHHHHHHHT--EEEE-TTHHHHHHHTT----------CCCC
T ss_pred ccccccccccccccccccccccccccccccccc---HHHHHHHHhhcCCcEEEECCCCCCcCcccccCccccHHHHHhhc
Confidence 444 455567887765443 332222 11222 89999999999999999965411 111222323334455
Q ss_pred CCCEEEee--ccccCCccchheeEeChhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q psy6548 82 RPDIVILG--KALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVIL 139 (242)
Q Consensus 82 ~~~~~~~s--K~~~~g~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~ 139 (242)
..|+++|| |-+||+ ..|.++++++++++++.....-.+..+-..+++..++++...
T Consensus 203 GaDlV~fSGdKlLGGP--QaGiI~Gkk~lI~~lk~~pl~RalrvdK~tla~L~atL~~Y~ 260 (367)
T PF03841_consen 203 GADLVTFSGDKLLGGP--QAGIIVGKKELIEKLKKHPLGRALRVDKLTLAALEATLRLYL 260 (367)
T ss_dssp T-SEEEEETTSSSSS---S-EEEEEEHHHHHHHHHHHHTTT-B--HHHHHHHHHHHHH--
T ss_pred CCCEEEEECCCcCCCC--CeEEEEeCHHHHHHHhhCCCcceEeeCHHHHHHHHHHHHHHH
Confidence 78999998 888875 489999999999998753233344455667777777777554
No 372
>PF05889 SLA_LP_auto_ag: Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen); InterPro: IPR008829 This family consists of several eukaryotic and archaeal proteins which are related to the Homo sapiens soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen). Autoantibodies are a hallmark of autoimmune hepatitis, but most are not disease specific. Autoantibodies to soluble liver antigen (SLA) and to liver and pancreas antigen (LP) have been described as disease specific, occurring in about 30% of all patients with autoimmune hepatitis []. The function of SLA/LP is unknown, however, it has been suggested that the protein may function as a serine hydroxymethyltransferase and may be an important enzyme in the thus far poorly understood selenocysteine pathway []. The archaeal sequences Q8TXK0 from SWISSPROT and Q8TYR3 from SWISSPROT are annotated as being pyridoxal phosphate-dependent enzymes.; GO: 0016740 transferase activity; PDB: 2E7J_B 2E7I_B 2Z67_C 3HL2_D 3BC8_A 3BCA_A 3BCB_A.
Probab=98.12 E-value=4.6e-05 Score=63.74 Aligned_cols=206 Identities=10% Similarity=0.058 Sum_probs=103.4
Q ss_pred CEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCc--cc--ccccCCC-CCCEEEeeccccCC
Q psy6548 21 NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGK--LL--AIHYEDV-RPDIVILGKALSGG 95 (242)
Q Consensus 21 ~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~--~~--~~~~~~~-~~~~~~~sK~~~~g 95 (242)
+..++++..+....| +.| +.+++|+++|++||++.++..+|. +...-. .. +.. .|. +.++-...|-|--|
T Consensus 154 ~~iLcvltttscfap-r~~--D~i~~IakiC~~~~IPhlvNnAYg-vQ~~~~~~~i~~a~~-~GRvda~vqS~dkNF~VP 228 (389)
T PF05889_consen 154 DNILCVLTTTSCFAP-RLP--DDIEEIAKICKEYDIPHLVNNAYG-VQSSKCMHLIQQAWR-VGRVDAFVQSTDKNFMVP 228 (389)
T ss_dssp GGEEEEEEESSTTTT-B------HHHHHHHHHHHT--EEEEGTTT-TT-HHHHHHHHHHHH-HSTCSEEEEEHHHHHCEE
T ss_pred CCeEEEEEecCccCC-CCC--ccHHHHHHHHHHcCCceEEccchh-hhHHHHHHHHHHHHh-cCCcceeeeecCCCEEec
Confidence 445555555555555 343 349999999999999999999985 310000 00 111 122 22223355766632
Q ss_pred ccchheeEeC-hhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHHhhcCC---CCCCe
Q psy6548 96 LYPISAVLAD-DEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILE--ENMIENAYKMGEIFRSELRSRLSP---DIVPV 169 (242)
Q Consensus 96 ~~~~g~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~--~~~~~~~~~~~~~l~~~l~~~l~~---~~~~~ 169 (242)
.+-+.+.++ +..+..+.....+-.+..+ ..-.-...+.+..+ ..+.....+...+++++| +.+.. .....
T Consensus 229 -vGgai~As~~~~~i~~vs~~YpGRas~sp--~ld~~itLl~LG~~g~~~ll~~r~~~f~~l~erl-~~~aee~~e~ll~ 304 (389)
T PF05889_consen 229 -VGGAIMASFDPSGILAVSKEYPGRASASP--SLDLFITLLSLGCTGYGALLKERKASFPYLKERL-KKWAEEVGERLLE 304 (389)
T ss_dssp -SSHEEEEESSHHHHHHHHHTSHSHBTSHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHTTEEBSS
T ss_pred -CCCcEEEecCHHHHHHHHHHhhhhhhccc--chHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH-HHHHHHhhhhhcC
Confidence 223334443 4555555542222222211 12121222222222 234455555666666666 44321 11122
Q ss_pred EeeeceeEEEEecCCc----hhHHHHHHHHHHCCceecc----C-----------CCCEEEEeccCcCCHHHHHHHHHHH
Q psy6548 170 VRGKGLLNAIVLDKSI----LEVYDVCIKMKDAGLVTKP----I-----------SNNIIRLSPALNITEQELREGLDII 230 (242)
Q Consensus 170 ~~~~~~~~~~~~~~~~----~~~~~~~~~l~~~gi~~~~----~-----------~~~~lR~~~~~~~t~e~i~~~~~~l 230 (242)
.+.......+.++.-. .+...+...|+.+||.-.. . ...++-++..+..+.||+|.++++|
T Consensus 305 ~p~N~is~a~tl~~l~~~~~k~~~~lgs~Lf~R~VsG~RvV~~~~~~~tsh~~~yp~~Ylt~AsaiG~~~eevd~~v~rL 384 (389)
T PF05889_consen 305 TPRNHISMAFTLDTLYEISQKDGTFLGSMLFKRGVSGIRVVTPGGKKQTSHSSNYPCPYLTAASAIGMTREEVDYFVKRL 384 (389)
T ss_dssp STT-SSEEEEE-TTCCTCCSSHHHHHHHHHHHTTEESSEEEETSSCEEETTSS--SSSEEEEEE-TT--HHHHHHHHHHH
T ss_pred CCCCCeeEEEECccchhhccchhhhHHHHHHhCCcccceeeccCCCcccccCCCCchHHHHHHHHhCCCHHHHHHHHHHH
Confidence 2233344455555321 3467899999999765432 1 1268888888999999999999999
Q ss_pred HHHHH
Q psy6548 231 INTIN 235 (242)
Q Consensus 231 ~~~l~ 235 (242)
+++++
T Consensus 385 ~k~i~ 389 (389)
T PF05889_consen 385 DKIIK 389 (389)
T ss_dssp HHHHH
T ss_pred HHHhC
Confidence 99875
No 373
>KOG1383|consensus
Probab=98.10 E-value=0.00073 Score=57.38 Aligned_cols=214 Identities=15% Similarity=0.149 Sum_probs=120.6
Q ss_pred hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHh-hCCEEEEeccccccCcc-CcccccccCCCC-CCEEEee--
Q psy6548 15 KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQ-YNVLFIADEVQTGLGRT-GKLLAIHYEDVR-PDIVILG-- 89 (242)
Q Consensus 15 ~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~-~~~~li~De~~~~~~~~-g~~~~~~~~~~~-~~~~~~s-- 89 (242)
....+.+|.+++.+-.+.+.|.+= .+++|.++.-+ +++++.+|.+-.||-.. +. .....|++. |-+.+.|
T Consensus 212 ~~~i~eNti~lv~~~~~~p~G~~e----~ve~l~~l~~e~w~ipiHvDa~~GgFi~p~~~-~~~~~fdFr~p~V~Sisa~ 286 (491)
T KOG1383|consen 212 VRMIDENTIMLVGSLPNFPTGEIE----DVEKLADLLLEIWDIPIHVDACLGGFINPAGY-LNEEEFDFRVPGVTSISAD 286 (491)
T ss_pred HHHhccceEEEEEEcCCCCccchh----hHHHHHHHHHHHhCCceeecccCccccccccc-cCccccccCCCCceeEeec
Confidence 445677899999999888888443 48999999988 99999999998877432 22 112234432 2222222
Q ss_pred --c-ccc-CCccchheeEeC-hh-hhhccCCC--CCC-----CCC--CCCHHHHHHHHHHHHHHHhccH---HHHHHHHH
Q psy6548 90 --K-ALS-GGLYPISAVLAD-DE-VMGTLVPG--THG-----STY--GGNPLACKLAMTALDVILEENM---IENAYKMG 151 (242)
Q Consensus 90 --K-~~~-~g~~~~g~~~~~-~~-~~~~l~~~--~~~-----~~~--~~~~~~~~~a~a~l~~~~~~~~---~~~~~~~~ 151 (242)
| +|. .| ++|++-. ++ +..++.-. ..| .|. +-+....+++++++=-+-.+++ -+++.+..
T Consensus 287 ~HKYGl~~~G---~~~vl~r~k~~~~~q~~~~~~w~Gg~y~s~TlngSR~g~~va~~wa~~~~lG~eGY~~~~~~ive~~ 363 (491)
T KOG1383|consen 287 GHKYGLAPAG---SSWVLYRNKELLPHQLFFHTDWLGGIYASPTLNGSRPGSQVAAQWAALMSLGEEGYRENTQNIVETA 363 (491)
T ss_pred cceeeeeecC---cEEEEEcccccccceEEEeccccCccccCcccccCCcccHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 3 333 34 5676532 22 22222210 011 111 2222334445555332323333 45666788
Q ss_pred HHHHHHHHhhcCCCCCCeEeeeceeEEEEecCCc-hhHHHHHHHHHHCCceeccC-CCCEEEEeccCcCCHHH-HHHHHH
Q psy6548 152 EIFRSELRSRLSPDIVPVVRGKGLLNAIVLDKSI-LEVYDVCIKMKDAGLVTKPI-SNNIIRLSPALNITEQE-LREGLD 228 (242)
Q Consensus 152 ~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~gi~~~~~-~~~~lR~~~~~~~t~e~-i~~~~~ 228 (242)
..+++.+ +....-.+. .. +.+.+...+.. .+.-++.+.|.+.|..+..- .+..+-+++...+..++ .++++.
T Consensus 364 ~~l~egi-e~i~~i~i~-gk---p~vs~~~~~s~~~~i~elsd~l~~~GW~lnalq~P~a~Hi~vt~~~~~~~~A~~~v~ 438 (491)
T KOG1383|consen 364 RKLREGI-ENIKGIKIV-GK---PLVSFILFGSNDVNIFELSDLLRKKGWILNALQFPAAIHICVTRVHAREDVADRFVA 438 (491)
T ss_pred HHHHHhh-hccccceec-CC---CcEEEEEccCCccchhhhhHHHHhcCcCccccCCCCceEEEEEeeeccHHHHHHHHH
Confidence 8888888 554431111 11 22333333321 45667899999999888531 23355555544444444 688999
Q ss_pred HHHHHHHHHhhhc
Q psy6548 229 IIINTINTMAAKK 241 (242)
Q Consensus 229 ~l~~~l~~~~~~~ 241 (242)
-|++++.++...+
T Consensus 439 Di~~~~~el~~~p 451 (491)
T KOG1383|consen 439 DIRKVVEELKSLP 451 (491)
T ss_pred HHHHHHHHHHhCC
Confidence 9999988876543
No 374
>COG1932 SerC Phosphoserine aminotransferase [Coenzyme metabolism / Amino acid transport and metabolism]
Probab=98.05 E-value=0.0013 Score=54.34 Aligned_cols=196 Identities=17% Similarity=0.132 Sum_probs=120.7
Q ss_pred CEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCC-CCCEEEee--ccccCCcc
Q psy6548 21 NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDV-RPDIVILG--KALSGGLY 97 (242)
Q Consensus 21 ~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~-~~~~~~~s--K~~~~g~~ 97 (242)
+.+.|..++....+|-.++...+. ... .++++|-+-. + ++ ...++ ..|++.+| |-+|+ -
T Consensus 144 ~~ayv~~~~NeTi~Gv~v~~~p~~------~~~--~~~v~D~SS~-i------ls-r~iDvsk~dviyagaQKnlGp--a 205 (365)
T COG1932 144 NDAYVHFCWNETISGVEVPELPDI------GSD--GLLVADASSA-I------LS-RPIDVSKYDVIYAGAQKNLGP--A 205 (365)
T ss_pred CccEEEEecCCcccceEccCCCCC------CCC--ceEEEecccH-H------hc-CCCChhHcceEEEehhhccCc--c
Confidence 355577777767677666542211 111 6788885432 1 11 11122 34677777 99993 2
Q ss_pred chheeEeChhhhhccCCC------------CCCCCCCCCH-HHHHHHHHHHHHHHh----ccHHHHHHHHHHHHHHHHHh
Q psy6548 98 PISAVLADDEVMGTLVPG------------THGSTYGGNP-LACKLAMTALDVILE----ENMIENAYKMGEIFRSELRS 160 (242)
Q Consensus 98 ~~g~~~~~~~~~~~l~~~------------~~~~~~~~~~-~~~~~a~a~l~~~~~----~~~~~~~~~~~~~l~~~l~~ 160 (242)
+++.++.++++.+++.+. ..++++.++| ++......+++.++. +.+.++.+++.+.|-+.+ .
T Consensus 206 GltvvIvr~~~l~r~~~~~~P~if~y~~~~~~~s~yNTPptfa~y~~~lv~~Wlk~~GGl~~~~~rn~~ka~~LY~~i-d 284 (365)
T COG1932 206 GLTVVIVRPDLLERAESYTLPSIFDYLTHADNGSMYNTPPTFAWYLLGLVFKWLKSQGGLEALEARNQAKAQLLYDWI-D 284 (365)
T ss_pred ceEEEEEcHHHHhcccccCCchHhhchhhhccCCccCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHH-H
Confidence 367888999999988663 1234444443 344444556777765 346677777888888888 3
Q ss_pred hcCC--CCCCeEeeeceeEEEEecCCchhHHHHHHHHHHCCceeccC--CCCEEEEeccCcCCHHHHHHHHHHHHHHHHH
Q psy6548 161 RLSP--DIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPI--SNNIIRLSPALNITEQELREGLDIIINTINT 236 (242)
Q Consensus 161 ~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~--~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~ 236 (242)
.-+- ........+-.-+.|.+.++ .....|...+.++|++.-.+ ..+.+|++.-...+.|+++.+++-++...+.
T Consensus 285 ~s~fy~~~v~~~~RS~mnV~f~~~~~-~ld~~fv~eae~~gl~~lkGhr~vgGmRasiynA~~~e~veaL~~fm~~f~~~ 363 (365)
T COG1932 285 KSDFYRNLVAKANRSRMNVTFTLVDA-ELDKGFVAEAEAAGLIYLKGHRSVGGLRASIYNAVPLEDVEALTDFMDWFEET 363 (365)
T ss_pred hCCccccccchhhccceeEEEEcCcH-HHHHHHHHHHHHcCCceeccccCCCceeeeeecCCCHHHHHHHHHHHHHHHHh
Confidence 3231 11222122223455666665 56678889998988777543 2445999988888999999999988876554
No 375
>PRK15400 lysine decarboxylase CadA; Provisional
Probab=97.99 E-value=0.00053 Score=62.34 Aligned_cols=198 Identities=11% Similarity=0.050 Sum_probs=109.2
Q ss_pred EEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEecccccc-CccCcc---cccccCCCC-CC--EEE--eecccc
Q psy6548 23 CAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGL-GRTGKL---LAIHYEDVR-PD--IVI--LGKALS 93 (242)
Q Consensus 23 ~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~-~~~g~~---~~~~~~~~~-~~--~~~--~sK~~~ 93 (242)
.+++..|.+ .| ++.+ +++|.++|+.++ |++||+|.+. ..+... .++. .+-. .+ +++ .-|.++
T Consensus 300 ~~vit~pTY--dG-~~yd---~~~I~~~~~~~~--ilvDEAwgah~~F~p~~~~~sam~-~ga~~~~~i~vtQStHKtL~ 370 (714)
T PRK15400 300 HAVITNSTY--DG-LLYN---TDFIKKTLDVKS--IHFDSAWVPYTNFSPIYEGKCGMS-GGRVEGKVIYETQSTHKLLA 370 (714)
T ss_pred EEEEECCCC--cc-EecC---HHHHHHHhCCCC--EEEEccchhhhccCcccCCcChhh-cCCCCCCceEEEEchhhccc
Confidence 366666633 36 4443 888999998887 6899999653 222211 1111 1111 13 555 448777
Q ss_pred CCccchheeEeC-----hhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHh---ccHHHHHHHHHHHHHHHHHhhcCCC
Q psy6548 94 GGLYPISAVLAD-----DEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILE---ENMIENAYKMGEIFRSELRSRLSPD 165 (242)
Q Consensus 94 ~g~~~~g~~~~~-----~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~---~~~~~~~~~~~~~l~~~l~~~l~~~ 165 (242)
+- ...+++-.+ +++.+.+. .-.|-|.+.+.++..-.+...++. +.+.+...+....+|+.| ..+...
T Consensus 371 al-TQaS~LHvkg~vd~~~~n~a~~---m~~STSPsY~l~ASLD~a~~~m~~~~G~~l~~~~i~~a~~~R~~l-~~~~~~ 445 (714)
T PRK15400 371 AF-SQASMIHVKGDVNEETFNEAYM---MHTTTSPHYGIVASTETAAAMMKGNAGKRLINGSIERAIKFRKEI-KRLRTE 445 (714)
T ss_pred ch-hHHhHHHHcCCCCHHHHHHHHH---HHcCCCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH-HhCCCc
Confidence 42 223332111 11212111 112223333444444444444542 235666777777888888 554320
Q ss_pred -----C-CCeEe-----------------e-----------eceeEEEEecC---------CchhHHHHHHHHHHCCcee
Q psy6548 166 -----I-VPVVR-----------------G-----------KGLLNAIVLDK---------SILEVYDVCIKMKDAGLVT 202 (242)
Q Consensus 166 -----~-~~~~~-----------------~-----------~~~~~~~~~~~---------~~~~~~~~~~~l~~~gi~~ 202 (242)
+ .+... + .-.-+.+..+. .+..+..+.+.|.++||.+
T Consensus 446 ~~~w~~~~~~~~~~~~~~~w~~~p~~~whgf~~~~~~~~~lDP~Klti~tpgi~~~g~~~~~Gipg~~v~~~L~e~gI~~ 525 (714)
T PRK15400 446 SDGWFFDVWQPDHIDTTECWPLRSDSTWHGFKNIDNEHMYLDPIKVTLLTPGMKKDGTMSDFGIPASIVAKYLDEHGIVV 525 (714)
T ss_pred ccCceEEecChhhcccchhcccCccccccCcccccccccccCCceEEEEeCCCCCCccccccCCCHHHHHHHHHHcCCEE
Confidence 0 00000 0 00111222322 1134667889999999999
Q ss_pred ccCCCCEEEEeccCcCCHHHHHHHHHHHHHHH
Q psy6548 203 KPISNNIIRLSPALNITEQELREGLDIIINTI 234 (242)
Q Consensus 203 ~~~~~~~lR~~~~~~~t~e~i~~~~~~l~~~l 234 (242)
--.+...+-+.++...|+++++++++.|.+.-
T Consensus 526 E~~d~~~iLfl~s~g~t~~~~~~L~~aL~~f~ 557 (714)
T PRK15400 526 EKTGPYNLLFLFSIGIDKTKALSLLRALTDFK 557 (714)
T ss_pred EecCCCeEEEEeCCCCCHHHHHHHHHHHHHHH
Confidence 98888899998889999999999999998753
No 376
>PRK13578 ornithine decarboxylase; Provisional
Probab=97.97 E-value=0.00086 Score=61.07 Aligned_cols=48 Identities=10% Similarity=0.074 Sum_probs=42.0
Q ss_pred HHHHHHHHHHCCceeccCCCCEEEEeccCcCCHHHHHHHHHHHHHHHH
Q psy6548 188 VYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTIN 235 (242)
Q Consensus 188 ~~~~~~~l~~~gi~~~~~~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~ 235 (242)
+..+.+.|.++||.+--.+...+-+.++...|+++++++++.|.+.-+
T Consensus 517 g~~l~~~L~e~gI~~E~~d~~~vL~l~s~g~t~~~~~~Lv~aL~~f~~ 564 (720)
T PRK13578 517 ATILANYLRENGIVPEKCDLNSILFLLTPAEDMAKLQQLVAMLARFEK 564 (720)
T ss_pred HHHHHHHHHHcCCEEEecCCCeEEEEeCCCCCHHHHHHHHHHHHHHHH
Confidence 578899998999999888888888888889999999999999987644
No 377
>PRK12566 glycine dehydrogenase; Provisional
Probab=97.95 E-value=0.0016 Score=60.83 Aligned_cols=196 Identities=11% Similarity=0.094 Sum_probs=117.5
Q ss_pred CCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccc-cccCccCcccccccCCCCCCEEE-eecccc--
Q psy6548 18 SNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQ-TGLGRTGKLLAIHYEDVRPDIVI-LGKALS-- 93 (242)
Q Consensus 18 ~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~-~~~~~~g~~~~~~~~~~~~~~~~-~sK~~~-- 93 (242)
.+++++++++..++.. |.+ . .++++.++++++|+++|+- +. ..++-.-.+ . ....|+++ -++.||
T Consensus 205 ~~~~~~~v~vq~P~~~-G~i-~---d~~~i~~~~h~~gal~~~~-~d~laL~ll~~P---g--e~GADI~vG~~Q~fGvp 273 (954)
T PRK12566 205 AAHAVFGALLQYPDTH-GEI-R---DLRPLIDQLHGQQALACVA-ADLLSLLVLTPP---G--ELGADVVLGSTQRFGVP 273 (954)
T ss_pred CCCCEEEEEEECCCCc-eEE-c---cHHHHHHHHHHcCCEEEEE-eCHHHHhCCCCh---h--hcCCcEEeeCCCcCCCC
Confidence 3457999998776654 434 2 3999999999999987632 21 101111111 1 23568887 335444
Q ss_pred ---CCccchheeEeChhhhhccCCCCCC----------------------------CCCCCCHHHHHHHHHHHHHH-Hhc
Q psy6548 94 ---GGLYPISAVLADDEVMGTLVPGTHG----------------------------STYGGNPLACKLAMTALDVI-LEE 141 (242)
Q Consensus 94 ---~g~~~~g~~~~~~~~~~~l~~~~~~----------------------------~~~~~~~~~~~~a~a~l~~~-~~~ 141 (242)
|| -.+|++.+++++...+-....+ ++...+...++.+-+.+-.+ -.+
T Consensus 274 ~~~GG-P~ag~~a~~~~~~R~~PGRivG~s~D~~G~~a~~l~LqtREQHIRReKAtSNICT~qaL~A~~a~~Y~~~~Gp~ 352 (954)
T PRK12566 274 MGYGG-PHAAYFACRDDYKRAMPGRIIGVSRDARGNTALRMALQTREQHIRREKANSNICTAQVLLANIAGFYAVYHGPE 352 (954)
T ss_pred CCCCC-CCeeeeeehHHHHhhCCCCccceeecCCCCeeeehhhhHHHHHhhhccccchhhHHHHHHHHHHHHHHHHhChH
Confidence 55 5688898888776666432222 11122222222211112112 123
Q ss_pred c---HHHHHHHHHHHHHHHHHhhcCCCCCCeEeeeceeEEEEecCCchhHHHHHHHHHHCCceeccCCCCEEEEeccCcC
Q psy6548 142 N---MIENAYKMGEIFRSELRSRLSPDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNI 218 (242)
Q Consensus 142 ~---~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~lR~~~~~~~ 218 (242)
+ +-.++..++.++.+.| +..+-.... ..+|--|.+.-. ....++.+...++||-++..+.+.+.+++.-..
T Consensus 353 Gl~~ia~~~~~~a~~l~~~l-~~~g~~~~~----~~fF~~~~v~~~-~~~~~~~~~a~~~~~n~r~~~~~~~~~s~de~~ 426 (954)
T PRK12566 353 GLKRIAQRVHRLTAILAAGL-EAKGIKRLN----RHFFDTLTLEVG-GAQAAIIESAEAARINLRILGRGRLGVSLDETC 426 (954)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HhcCCcccc----CCccceEEEEcc-CCHHHHHHHHHHCCCeeEEeCCCeEEEEeCCCC
Confidence 3 3455667788888889 555422211 123333333322 246788889999999999887888999998899
Q ss_pred CHHHHHHHHHHHH
Q psy6548 219 TEQELREGLDIII 231 (242)
Q Consensus 219 t~e~i~~~~~~l~ 231 (242)
+.+|++.+++.+.
T Consensus 427 ~~~~~~~~~~~f~ 439 (954)
T PRK12566 427 DEATVARLFDIFL 439 (954)
T ss_pred CHHHHHHHHHHhc
Confidence 9999999999984
No 378
>KOG2467|consensus
Probab=97.83 E-value=0.0011 Score=54.73 Aligned_cols=181 Identities=18% Similarity=0.204 Sum_probs=103.2
Q ss_pred HHHHHHHHHhhCCEEEEeccc-cccCccCc-ccccccCCCCCCEEE--eeccccCCccchheeEeChhhhh---------
Q psy6548 44 LKKVRALCSQYNVLFIADEVQ-TGLGRTGK-LLAIHYEDVRPDIVI--LGKALSGGLYPISAVLADDEVMG--------- 110 (242)
Q Consensus 44 l~~l~~l~~~~~~~li~De~~-~~~~~~g~-~~~~~~~~~~~~~~~--~sK~~~~g~~~~g~~~~~~~~~~--------- 110 (242)
..+++++|.+.|+++++|=+| +|+...+. +..+++ .|+++ .-|++-|+ |.|.+.-.+-+..
T Consensus 206 YaR~R~Iad~~gA~Lm~DMAHISgLVAA~vipsPFey----~DiVTTTTHKsLRGP--Rg~mIFyRkGvk~~~~k~g~~i 279 (477)
T KOG2467|consen 206 YARFRKIADKVGAYLMADMAHISGLVAAGVIPSPFEY----CDIVTTTTHKSLRGP--RGAMIFYRKGVKSIKPKQGKEI 279 (477)
T ss_pred HHHHHHHHHhcCceeehhhhhHHHHHhcccCCCcccc----cceeeccccccccCC--cceeEEEeccCCcCCCCCCCcc
Confidence 788999999999999999999 77644442 222222 46666 45888864 5555543321111
Q ss_pred ------ccC----CCCCCCCCCCCHHHHHHHHHHHHHHHhc---cHHHHHHHHHHHHHHHHHhhcCCCCCCeEeeeceeE
Q psy6548 111 ------TLV----PGTHGSTYGGNPLACKLAMTALDVILEE---NMIENAYKMGEIFRSELRSRLSPDIVPVVRGKGLLN 177 (242)
Q Consensus 111 ------~l~----~~~~~~~~~~~~~~~~~a~a~l~~~~~~---~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~ 177 (242)
.+. |..+++. +.-..++...+|+...++ ++.+++.++.+.+.+.| ...+..+.+.... ..++
T Consensus 280 ~ydlE~kINfaVFP~lQGGP---HNhtIaalAvALkQa~tpefk~Yq~qV~~Nakala~~l-~~~Gy~lvtgGTD-nHlv 354 (477)
T KOG2467|consen 280 LYDLEDKINFAVFPGLQGGP---HNHTIAALAVALKQAMTPEFKEYQKQVLKNAKALASAL-ISRGYKLVTGGTD-NHLV 354 (477)
T ss_pred eechhhhhhhhccccccCCC---CcchHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHH-HHcCceEecCCcc-ceEE
Confidence 110 1112221 122233323345554443 46677888999999999 7766544333222 3566
Q ss_pred EEEecCCchhHHHHHHHHHHCCceec----cC-----CCCEEEEecc----CcCCHHHHHHHHHHHHHHHH
Q psy6548 178 AIVLDKSILEVYDVCIKMKDAGLVTK----PI-----SNNIIRLSPA----LNITEQELREGLDIIINTIN 235 (242)
Q Consensus 178 ~~~~~~~~~~~~~~~~~l~~~gi~~~----~~-----~~~~lR~~~~----~~~t~e~i~~~~~~l~~~l~ 235 (242)
.+++...+.+....-+-|-.-+|.+. |+ .++.+|+.-+ -...++|+++..+-|.++.+
T Consensus 355 LvDLr~~G~dGarvE~vle~~~I~~NKNtvpGD~Sal~PgGiRiGtPAmTsRG~~e~df~~v~~fi~~av~ 425 (477)
T KOG2467|consen 355 LVDLRPKGVDGARVEKVLELCHIALNKNTVPGDKSALSPGGIRIGTPAMTSRGFGEEDFEKVADFIDRAVK 425 (477)
T ss_pred EEeccccCCchHHHHHHHHHhhhhhcCCcCCCCccccCCCceeccchhhcccCccHHHHHHHHHHHHHHHH
Confidence 67777654333333333333344332 22 4678999643 34567888888888877654
No 379
>KOG1412|consensus
Probab=97.81 E-value=0.00029 Score=56.89 Aligned_cols=192 Identities=16% Similarity=0.165 Sum_probs=109.9
Q ss_pred cccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcc----cccccC-CCCCCE-EE--eecccc-CCccchh
Q psy6548 30 IQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKL----LAIHYE-DVRPDI-VI--LGKALS-GGLYPIS 100 (242)
Q Consensus 30 ~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~----~~~~~~-~~~~~~-~~--~sK~~~-~g~~~~g 100 (242)
.+|++| +=|+.|-+++|++.-+..+.+-++|-+|-||. .|.+ |+..++ ....++ ++ |+|-|| -+ -|+|
T Consensus 187 AhNPTG-mDPT~EQW~qia~vik~k~lf~fFDiAYQGfA-SGD~~~DawAiR~fV~~g~e~fv~QSFaKNfGlYn-eRvG 263 (410)
T KOG1412|consen 187 AHNPTG-MDPTREQWKQIADVIKSKNLFPFFDIAYQGFA-SGDLDADAWAIRYFVEQGFELFVCQSFAKNFGLYN-ERVG 263 (410)
T ss_pred ccCCCC-CCCCHHHHHHHHHHHHhcCceeeeehhhcccc-cCCccccHHHHHHHHhcCCeEEEEhhhhhhccccc-cccc
Confidence 588998 67788889999999999999999999999883 4432 332221 111233 33 999988 44 5777
Q ss_pred ee--Ee-ChhhhhccCC-C--CCCCCCCCCHHHHHHHHHHHHHHHhc-----------cHHHHHHHHHHHHHHHHHhhcC
Q psy6548 101 AV--LA-DDEVMGTLVP-G--THGSTYGGNPLACKLAMTALDVILEE-----------NMIENAYKMGEIFRSELRSRLS 163 (242)
Q Consensus 101 ~~--~~-~~~~~~~l~~-~--~~~~~~~~~~~~~~~a~a~l~~~~~~-----------~~~~~~~~~~~~l~~~l~~~l~ 163 (242)
-+ +. ++..+..+.. . ....+++ ||++. +|+-+-+.+.++ .+..++++.+..|++.| ..|+
T Consensus 264 nltvv~~n~a~i~~v~SQl~lviR~~~S-NPPAy-GArIV~kvL~tP~lre~W~~sik~MssRI~~MR~aLrd~L-~aL~ 340 (410)
T KOG1412|consen 264 NLTVVVNNPAVIAGVKSQLTLVIRSNWS-NPPAY-GARIVHKVLSTPELREQWIQSIKTMSSRIKKMRTALRDHL-VALK 340 (410)
T ss_pred ceEEEecChhHHHHHHHHHHHHHhhccC-CCcch-hhHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcC
Confidence 43 23 3344333322 1 1123333 34443 334444555432 23456677888888888 6665
Q ss_pred C-CC-CCeEeeeceeEEEEecCCchhHHHHHHHHHH-CCceeccCCCCEEEEeccCcCCHHHHHHHHHHHHHHHHHHh
Q psy6548 164 P-DI-VPVVRGKGLLNAIVLDKSILEVYDVCIKMKD-AGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINTMA 238 (242)
Q Consensus 164 ~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~gi~~~~~~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~~ 238 (242)
- +. ..-.+..|.+-.. . .....+++|.+ +.|++.+. + |++.+.- +...+|...++|.++...+.
T Consensus 341 TPGtWDHI~~QiGMFSyT---G---Ltp~qV~~li~~h~vyLl~~--G--RInisGL-N~~NveyVAkAIde~Vr~~~ 407 (410)
T KOG1412|consen 341 TPGTWDHITQQIGMFSYT---G---LTPAQVDHLIENHKVYLLSD--G--RINISGL-NMKNVEYVAKAIDETVRAIK 407 (410)
T ss_pred CCCcHHHHHhhccceeec---C---CCHHHHHHHHHhceEEEecC--C--cEeeecc-ccccHHHHHHHHHHHHHhhc
Confidence 2 21 1112333433222 2 23345667765 46666554 3 5544344 45578888888888776653
No 380
>PRK15399 lysine decarboxylase LdcC; Provisional
Probab=97.78 E-value=0.0047 Score=56.34 Aligned_cols=201 Identities=13% Similarity=0.052 Sum_probs=108.8
Q ss_pred EEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEE-EEecccccc-CccCcc---cccccCCCCCCEE---E--eeccc
Q psy6548 23 CAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLF-IADEVQTGL-GRTGKL---LAIHYEDVRPDIV---I--LGKAL 92 (242)
Q Consensus 23 ~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~l-i~De~~~~~-~~~g~~---~~~~~~~~~~~~~---~--~sK~~ 92 (242)
++++..|. -.| ++.+ +++|.++| |+.+ ++||+|.+. ..+... .++. .+-.+|.+ + .-|.+
T Consensus 300 ~vvit~pT--YdG-i~yd---~~~I~~~~---g~~~ilvDEAhgah~~F~p~~~~~sam~-~~~~aD~~i~~tQStHKtL 369 (713)
T PRK15399 300 HAVITNST--YDG-LLYN---TDWIKQTL---DVPSIHFDSAWVPYTHFHPIYQGKSGMS-GERVPGKVIFETQSTHKML 369 (713)
T ss_pred EEEEECCC--CCc-eeeC---HHHHHHHh---CCCEEEEeccchhhhhcCcccCCcChhh-CCCCCCeeeeeeeehhccc
Confidence 45555553 336 4444 77788887 5666 699999653 222211 1111 11135665 3 44877
Q ss_pred cCCccchheeEeChhhh-hccCCC-CCCCCCCCCHHHHHHHHHHHHHHHh---ccHHHHHHHHHHHHHHHHHhhcCC---
Q psy6548 93 SGGLYPISAVLADDEVM-GTLVPG-THGSTYGGNPLACKLAMTALDVILE---ENMIENAYKMGEIFRSELRSRLSP--- 164 (242)
Q Consensus 93 ~~g~~~~g~~~~~~~~~-~~l~~~-~~~~~~~~~~~~~~~a~a~l~~~~~---~~~~~~~~~~~~~l~~~l~~~l~~--- 164 (242)
++- ...+++-.+..+- +++... ..-.|-|.+.+.++..-.+...++. +.+.+...+.+..+|+.+ ..+..
T Consensus 370 ~al-TQaS~iHvk~~vd~~~~n~a~~m~~STSPsY~LmASLD~a~~~m~~~~G~~l~~~~i~~a~~fR~~l-~~~~~~~~ 447 (713)
T PRK15399 370 AAF-SQASLIHIKGEYDEETFNEAFMMHTSTSPSYPIVASVETAAAMLRGNPGKRLINRSVERALHFRKEV-QRLREESD 447 (713)
T ss_pred ccc-chheeeeecCCCCHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH-Hhcccccc
Confidence 752 3344443322111 111111 0112223333444443444444542 235666777777788877 44331
Q ss_pred CC---CCeE-----------------ee-----------eceeEEEEec---------CCchhHHHHHHHHHHCCceecc
Q psy6548 165 DI---VPVV-----------------RG-----------KGLLNAIVLD---------KSILEVYDVCIKMKDAGLVTKP 204 (242)
Q Consensus 165 ~~---~~~~-----------------~~-----------~~~~~~~~~~---------~~~~~~~~~~~~l~~~gi~~~~ 204 (242)
.+ .+.. ++ .-.-+.+..+ ..+..+..+.+.|.++||.+--
T Consensus 448 ~w~f~~~~~~~~~~~~~w~l~p~~~whgf~~~~~~~~~lDP~KltI~t~g~~~~g~~~~~Gi~g~~l~~~L~e~gI~~E~ 527 (713)
T PRK15399 448 GWFFDIWQPENVDEAECWPVAPGEQWHGFKDADADHMFLDPVKVTILTPGMDEQGNMSEEGIPAALVAKFLDERGIVVEK 527 (713)
T ss_pred CceeeecCccccCCccceecCCCcccccccccccccccCCCceEEEEecCcccccccccCCCCHHHHHHHHHHcCCEEEe
Confidence 00 0000 00 0011122232 1124567889999999999998
Q ss_pred CCCCEEEEeccCcCCHHHHHHHHHHHHHHHH
Q psy6548 205 ISNNIIRLSPALNITEQELREGLDIIINTIN 235 (242)
Q Consensus 205 ~~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~ 235 (242)
.+...+-+.++...|+++++++++.|.+.-+
T Consensus 528 ~d~~~vL~l~s~g~t~~~~~~L~~aL~~f~~ 558 (713)
T PRK15399 528 TGPYNLLFLFSIGIDKTKAMGLLRGLTEFKR 558 (713)
T ss_pred cCCCeEEEEeCCCCCHHHHHHHHHHHHHHHH
Confidence 8888888888899999999999999987633
No 381
>KOG2040|consensus
Probab=97.68 E-value=0.0022 Score=56.85 Aligned_cols=206 Identities=17% Similarity=0.164 Sum_probs=124.5
Q ss_pred CCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEecccc----ccCccCcccccccCCCCCCEEE--eeccc
Q psy6548 19 NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQT----GLGRTGKLLAIHYEDVRPDIVI--LGKAL 92 (242)
Q Consensus 19 ~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~----~~~~~g~~~~~~~~~~~~~~~~--~sK~~ 92 (242)
.++.+++.+.-+... | +.- +-++++.++.++||-.+..|.+.+ |+.+.|. +..|+.- +-|.|
T Consensus 678 ~~~Laa~MvTYPST~-G-vfE--~~i~d~cd~iHehGGQVYlDGANMNAqVGlc~pGd--------~GaDV~HLNLHKTF 745 (1001)
T KOG2040|consen 678 KDNLAALMVTYPSTH-G-VFE--EGIDDICDIIHEHGGQVYLDGANMNAQVGLCRPGD--------IGADVCHLNLHKTF 745 (1001)
T ss_pred hhhhheeEEeccccc-c-ccc--ccHHHHHHHHHhcCCEEEecCCCccceecccCCcc--------ccccceeeccccee
Confidence 567888877765443 3 322 349999999999999999998764 2322222 2234333 55766
Q ss_pred c-----CCccchheeEeChhhhhccCCCCCC---------------CCCCCCHHHHHHHHHHHHHHHhccH---HHHHHH
Q psy6548 93 S-----GGLYPISAVLADDEVMGTLVPGTHG---------------STYGGNPLACKLAMTALDVILEENM---IENAYK 149 (242)
Q Consensus 93 ~-----~g~~~~g~~~~~~~~~~~l~~~~~~---------------~~~~~~~~~~~~a~a~l~~~~~~~~---~~~~~~ 149 (242)
. || .+.|-+..+++++.++...... ....++...+...++-++.+-..++ .+..--
T Consensus 746 cIPHGGGG-Pg~gPIgVK~HLapfLP~HpVvs~~~~~~~~~~gsVsaaP~Gsa~ILpISwaYikmMG~~GL~~as~~AiL 824 (1001)
T KOG2040|consen 746 CIPHGGGG-PGMGPIGVKKHLAPFLPSHPVVSPGRPEDTSPVGSVSAAPWGSALILPISWAYIKMMGSGGLKDASKIAIL 824 (1001)
T ss_pred eecCCCCC-CCCCccchhhhccccCCCCCccCCCCCCCCCCccceeccCCCcceeehhHHHHHHHhcccccchhhHHHhh
Confidence 5 44 5566666677777666432111 1112333444456766776655443 233344
Q ss_pred HHHHHHHHHHhhcCCCCCCeEee-eceeEEEEecCC----chhHHHHHHHHHHCCceecc---CCCCEEEEeccCcCCHH
Q psy6548 150 MGEIFRSELRSRLSPDIVPVVRG-KGLLNAIVLDKS----ILEVYDVCIKMKDAGLVTKP---ISNNIIRLSPALNITEQ 221 (242)
Q Consensus 150 ~~~~l~~~l~~~l~~~~~~~~~~-~~~~~~~~~~~~----~~~~~~~~~~l~~~gi~~~~---~~~~~lR~~~~~~~t~e 221 (242)
++++..++| +..-..+.....+ .+.-+.+++.+- +.++.+++++|.+.|...-. .-.+.+.+-|.-.-+.+
T Consensus 825 NaNYMakRL-e~hYkil~~~~~~~vaHEFIlD~r~fK~~agieavDvAKRL~DYgFHaPTmswPV~gtLMIEPTESE~k~ 903 (1001)
T KOG2040|consen 825 NANYMAKRL-ESHYKILFRGENGLVAHEFILDLRPFKKTAGIEAVDVAKRLMDYGFHAPTMSWPVAGTLMIEPTESEDKA 903 (1001)
T ss_pred hhHHHHHHH-hhccceeEecCCcceeeeeeeechhhccccCCcHHHHHHHHHhccCCCCccccccCCceEeccCccccHH
Confidence 677888888 4432211111111 122333443332 16788999999999987632 24688999988888999
Q ss_pred HHHHHHHHHHHHHHHHh
Q psy6548 222 ELREGLDIIINTINTMA 238 (242)
Q Consensus 222 ~i~~~~~~l~~~l~~~~ 238 (242)
|+|++.+++-.+-+++.
T Consensus 904 ElDRfcdAliSIreEI~ 920 (1001)
T KOG2040|consen 904 ELDRFCDALISIREEIA 920 (1001)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999877766654
No 382
>PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ].; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 3MC6_A 1XEY_A 1ES0_B 2OKK_A 2JIS_B 2QMA_A 3MAF_B 3MAD_B 3MAU_A 3MBB_A ....
Probab=97.65 E-value=0.00076 Score=57.38 Aligned_cols=139 Identities=17% Similarity=0.225 Sum_probs=74.9
Q ss_pred CCCEEE-EEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCC-CCCEEE--eeccccC
Q psy6548 19 NPNICA-FMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDV-RPDIVI--LGKALSG 94 (242)
Q Consensus 19 ~~~~~~-i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~-~~~~~~--~sK~~~~ 94 (242)
++.+.+ |+..-.-..+|.+=| +++|+++|++|++++.+|.++.|.............++ ..|-++ ..|.++.
T Consensus 191 ~g~~p~~vvat~Gtt~~Ga~D~----l~~i~~i~~~~~~wlHVDaA~gg~~~~~~~~~~~~~gi~~adSit~d~HK~l~~ 266 (373)
T PF00282_consen 191 NGKTPFAVVATAGTTNTGAIDP----LEEIADICEKYNIWLHVDAAYGGSALLSPEYRHLLFGIERADSITIDPHKWLGV 266 (373)
T ss_dssp TTEEEEEEEEEBS-TTTSBB-S----HHHHHHHHHHCT-EEEEEETTGGGGGGHCTTGGGGTTGGGESEEEEETTTTTS-
T ss_pred ccccceeeeccCCCcccccccC----HHHHhhhccccceeeeecccccccccccccccccccccccccccccchhhhhcC
Confidence 445553 333334444564432 99999999999999999999987211111111111222 235555 5599998
Q ss_pred CccchheeEeChh-hh-hcc--CCCCCC--------------CCCCCC-HHHHHHHHHHHHHHHhcc---HHHHHHHHHH
Q psy6548 95 GLYPISAVLADDE-VM-GTL--VPGTHG--------------STYGGN-PLACKLAMTALDVILEEN---MIENAYKMGE 152 (242)
Q Consensus 95 g~~~~g~~~~~~~-~~-~~l--~~~~~~--------------~~~~~~-~~~~~~a~a~l~~~~~~~---~~~~~~~~~~ 152 (242)
+ +++|+++..++ .. ..+ .+.+.. .+...+ .......+.+++.+-.++ ..++..++++
T Consensus 267 P-~~~~~~l~r~~~~l~~~~~~~~~Yl~~~~~~~~~~~~~~~~tl~~SR~~~alk~w~~l~~~G~~G~~~~i~~~~~~a~ 345 (373)
T PF00282_consen 267 P-YGCGVLLVRDKSDLRDAFSINADYLGNDDRESDESYDYGDYTLQGSRRFRALKLWATLKSLGREGYRERIRRCIELAR 345 (373)
T ss_dssp S-SS-EEEEESSGGGHHGGGEEEETCTT-S-SSS-GGGCEEEGSSSSSGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred C-ccceeEEeecccchHHHhccChhhhcccccccccccccccccccccccchHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 8 89999887643 22 222 111011 111222 234444566666554443 4566667888
Q ss_pred HHHHHHHhhcC
Q psy6548 153 IFRSELRSRLS 163 (242)
Q Consensus 153 ~l~~~l~~~l~ 163 (242)
++++.| ++.+
T Consensus 346 ~l~~~l-~~~~ 355 (373)
T PF00282_consen 346 YLADRL-RKDP 355 (373)
T ss_dssp HHHHHH-HTST
T ss_pred HHHHHH-HhCC
Confidence 888888 5554
No 383
>KOG0628|consensus
Probab=97.61 E-value=0.0056 Score=52.17 Aligned_cols=62 Identities=13% Similarity=0.182 Sum_probs=45.0
Q ss_pred eEEEEecCCchhHHHHHHHHHHC-CceeccC---CCCEEEEeccC-cCCHHHHHHHHHHHHHHHHHH
Q psy6548 176 LNAIVLDKSILEVYDVCIKMKDA-GLVTKPI---SNNIIRLSPAL-NITEQELREGLDIIINTINTM 237 (242)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~l~~~-gi~~~~~---~~~~lR~~~~~-~~t~e~i~~~~~~l~~~l~~~ 237 (242)
++.|.+.+.....+++.+++... .|.+.|. +.-.||++... ..+++++++..+.|.+....+
T Consensus 406 LvcFRlk~~N~~ne~Ll~~in~~g~i~l~~~~l~gk~vlRf~V~s~~t~~~di~~a~~~I~~~a~~l 472 (511)
T KOG0628|consen 406 LVCFRLKGDNEINEALLNRLNSSGRIHLVPASLHGKFVLRFAVCSPLTNESDIDEAWKIIFEAADEL 472 (511)
T ss_pred eeEEeecCCcHHHHHHHHHHHhcCcEEEEEeeecceEEEEEEecCCCCcHHHHHHHHHHHHHHHHHH
Confidence 45566666556778888888765 5566654 56679998654 446788999999999887764
No 384
>PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases. It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B ....
Probab=97.51 E-value=0.00014 Score=59.57 Aligned_cols=88 Identities=15% Similarity=0.090 Sum_probs=56.4
Q ss_pred CCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccc--cCccCcccccccCCCCCCEEE--eeccccCC
Q psy6548 20 PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTG--LGRTGKLLAIHYEDVRPDIVI--LGKALSGG 95 (242)
Q Consensus 20 ~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~--~~~~g~~~~~~~~~~~~~~~~--~sK~~~~g 95 (242)
.++++|++|...+..|+.+++.+.+++|.++|++||+.++.|.+-.. ....+.. ....--..|.++ ++|.++..
T Consensus 123 ~~~~~v~le~t~~~~GG~~~s~~el~ai~~~a~~~gl~lhmDGARl~~a~~~~~~~--~~e~~~~~D~v~~~~tK~~g~~ 200 (290)
T PF01212_consen 123 PQPAVVSLENTTELAGGTVYSLEELRAISELAREHGLPLHMDGARLANAAAALGVS--LAEIAAGADSVSFGGTKNGGAP 200 (290)
T ss_dssp GGEEEEEEESSBTTTTSB---HHHHHHHHHHHHHHT-EEEEEETTHHHHHCHHHHH--HHHHHTTSSEEEEETTSTT-SS
T ss_pred CCccEEEEEecCcCCCCeeCCHHHHHHHHHHHHhCceEEEEehhhHHHhhhccccc--HHHHhhhCCEEEEEEEcccccc
Confidence 57999999999999888899999999999999999999999987521 1111111 111112457776 45877732
Q ss_pred ccchheeEeChhhhhc
Q psy6548 96 LYPISAVLADDEVMGT 111 (242)
Q Consensus 96 ~~~~g~~~~~~~~~~~ 111 (242)
..+.++++++.++.
T Consensus 201 --~Gavl~~~~~~i~~ 214 (290)
T PF01212_consen 201 --GGAVLAGNKEFIAK 214 (290)
T ss_dssp --SEEEEEESHHHHHH
T ss_pred --cceEEEechHHHHH
Confidence 13456688875443
No 385
>KOG0629|consensus
Probab=97.42 E-value=0.0024 Score=53.82 Aligned_cols=205 Identities=15% Similarity=0.133 Sum_probs=107.6
Q ss_pred EEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccc-c--CccCcccccccCCC-CCCEEE--eeccccCC
Q psy6548 22 ICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTG-L--GRTGKLLAIHYEDV-RPDIVI--LGKALSGG 95 (242)
Q Consensus 22 ~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~-~--~~~g~~~~~~~~~~-~~~~~~--~sK~~~~g 95 (242)
+..+.+..--...|+.=| |+.++++|++|+.++.+|.+..| + .+..+ ....|+ ..+-++ -.|.+|++
T Consensus 254 Pf~vnaTaGTTV~GAFDd----L~~iadiC~k~~lWmHvDAAwGGglLmS~k~R---~kl~Giera~SvtwnpHK~~gap 326 (510)
T KOG0629|consen 254 PFFVNATAGTTVLGAFDD----LNGIADICEKHKLWMHVDAAWGGGLLMSRKHR---HKLTGIERANSVTWNPHKLMGAP 326 (510)
T ss_pred CeEEEecCCceeeeccCc----HHHHHHHHHhcCEEEEeecccccccccChhhH---hhccCccccCceeecHHHhhcCc
Confidence 455554443333454433 99999999999999999999865 2 11111 122344 345555 34999988
Q ss_pred ccchheeEeChh-hhhccCCCCCCCCC-----------CCCHHHHHH-HHHHHHHH---Hh------ccHHHHHHHHHHH
Q psy6548 96 LYPISAVLADDE-VMGTLVPGTHGSTY-----------GGNPLACKL-AMTALDVI---LE------ENMIENAYKMGEI 153 (242)
Q Consensus 96 ~~~~g~~~~~~~-~~~~l~~~~~~~~~-----------~~~~~~~~~-a~a~l~~~---~~------~~~~~~~~~~~~~ 153 (242)
+.++.++...+ +.++-.+....+-| +++-..+.+ -...++++ +. +..+++.-+++++
T Consensus 327 -lqCsa~l~r~~gll~~Cn~~~A~YLFq~dK~YdvS~DTgdK~iQCGRh~D~FKlWlmwkaKG~~Gfe~~v~k~~~lA~y 405 (510)
T KOG0629|consen 327 -LQCSAFLTREEGLLQRCNQMSAIYLFQQDKFYDVSYDTGDKAIQCGRHVDVFKLWLMWKAKGTQGFEAQVDKCLRLAEY 405 (510)
T ss_pred -chhhHHHHHHHHHHHhhcccchhhhhccCceeecccccccchhhcCccccHHHHHHHHHhcccccHHHHHHHHHHHHHH
Confidence 88888776643 34333332222211 111111211 00112211 11 2345667778999
Q ss_pred HHHHHHhhcCC-CCCCe--EeeeceeEEEEecC-----Cc--------hhHHHHHHHHHHCCcee---ccC--CCCEEEE
Q psy6548 154 FRSELRSRLSP-DIVPV--VRGKGLLNAIVLDK-----SI--------LEVYDVCIKMKDAGLVT---KPI--SNNIIRL 212 (242)
Q Consensus 154 l~~~l~~~l~~-~~~~~--~~~~~~~~~~~~~~-----~~--------~~~~~~~~~l~~~gi~~---~~~--~~~~lR~ 212 (242)
+.+.| ++-+. ..... ++-.-..+|...+. .. ..+-.+..+++++|..- .|. .++++|.
T Consensus 406 l~~~l-rer~~~~~l~~~~pe~~nv~fw~vp~~lR~~~~~~e~~~rL~kVaPkIK~~Mm~~Gt~Mi~YqPl~~~~nffr~ 484 (510)
T KOG0629|consen 406 LYDRL-REREGFEMLFELEPEHVNVCFWYVPPSLRGWQENPERDSRLVKVAPKIKERMMKKGTTMIGYQPLGDKPNFFRM 484 (510)
T ss_pred HHHHH-HhcccceehhcCCCceEEEeeccCchHhccCcccchhhhHHHhhCcHHHHHHHhccceeeEecccccccchhhe
Confidence 99999 44432 22222 11111112211111 00 11234566777776443 232 3678888
Q ss_pred ec-cCcCCHHHHHHHHHHHHHHHH
Q psy6548 213 SP-ALNITEQELREGLDIIINTIN 235 (242)
Q Consensus 213 ~~-~~~~t~e~i~~~~~~l~~~l~ 235 (242)
.. +.+.+.+|++.+++.|++.-+
T Consensus 485 v~sn~a~~~ad~dflldEIerlgq 508 (510)
T KOG0629|consen 485 VISNPALTEADLDFLLDEIERLGQ 508 (510)
T ss_pred ecccchhhhhhHHHHHHHHHHhcc
Confidence 53 335688999999999887644
No 386
>COG3033 TnaA Tryptophanase [Amino acid transport and metabolism]
Probab=97.36 E-value=0.024 Score=47.11 Aligned_cols=210 Identities=13% Similarity=0.124 Sum_probs=116.0
Q ss_pred CCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEecccc-c---cCccCcccccccCCC---------CCCE
Q psy6548 19 NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQT-G---LGRTGKLLAIHYEDV---------RPDI 85 (242)
Q Consensus 19 ~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~-~---~~~~g~~~~~~~~~~---------~~~~ 85 (242)
.+++..|++.-.+|..|+-+-+-+-+++++++|++|++.++.|.+.. . |..-.+.. .+.|-+ -.|-
T Consensus 183 ~~nvp~I~~tiT~NsagGQpVSm~n~r~v~~ia~ky~ipvv~Da~RfaENaYFIk~rE~g-Yrd~sI~~IarEm~sYaD~ 261 (471)
T COG3033 183 ADNVPYIVLTITNNSAGGQPVSMANMKAVYEIAKKYDIPVVMDAARFAENAYFIKQREPG-YRDWSIEEIAREMYSYADG 261 (471)
T ss_pred cccCcEEEEEEeccccCCCcchHHhHHHHHHHHHHcCCcEEeehhhhhhhhhhhhhcCcc-cccccHHHHHHHHHhhhhh
Confidence 35677777777666666678888899999999999999999998762 1 11111110 011111 1234
Q ss_pred EEee-c--cccCCccchh-eeEeChh----hhhccCCC---CCC-CCCCC-CHHHHHHHHHHHHHHHhccHHHHHHHHHH
Q psy6548 86 VILG-K--ALSGGLYPIS-AVLADDE----VMGTLVPG---THG-STYGG-NPLACKLAMTALDVILEENMIENAYKMGE 152 (242)
Q Consensus 86 ~~~s-K--~~~~g~~~~g-~~~~~~~----~~~~l~~~---~~~-~~~~~-~~~~~~~a~a~l~~~~~~~~~~~~~~~~~ 152 (242)
.++| | ++. ++| ++....+ +.+.++.. ..+ .|+++ ..-.+.+....|....+.++.++.-.-.+
T Consensus 262 ~~mS~KKD~lv----nmGGfl~~~D~~~fDvy~~~~~~~V~~eG~~tYGgl~GrdmealAvGL~e~~~~~yl~~Rv~Qv~ 337 (471)
T COG3033 262 CTMSAKKDGLV----NMGGFLCFKDDSFFDVYEECRTLVVVQEGFPTYGGLAGRDMEALAVGLREGVNFDYLAHRVAQVQ 337 (471)
T ss_pred heeecccccee----ccccEEEecCccHHHHHHHHHhheEeeccccccCcccchhHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 4444 4 333 222 2334433 44444332 111 12221 12222222223443334556666666677
Q ss_pred HHHHHHHhhcCCCCCCeEeeeceeEEEEecC-------CchhHHHHHHHHHH-CCceecc-----------------CCC
Q psy6548 153 IFRSELRSRLSPDIVPVVRGKGLLNAIVLDK-------SILEVYDVCIKMKD-AGLVTKP-----------------ISN 207 (242)
Q Consensus 153 ~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~l~~-~gi~~~~-----------------~~~ 207 (242)
+|.+.| ...+ ++...+..|.-+.++... +..-++.++-.|.. .||=... +.-
T Consensus 338 YL~~~l-~~~G--Vpi~~paGGHavfvda~~~lphip~eqFpaqala~ely~e~GiRavElG~~~~~rd~ktg~q~~~~~ 414 (471)
T COG3033 338 YLADGL-EEAG--VPIVQPAGGHAVFVDAGKFLPHIPAEQFPAQALACELYKEAGIRAVELGSFSLGRDPKTGKQHPPPA 414 (471)
T ss_pred HHHHHH-HhcC--CeeEecCCCceEEeehhhhcCCCChhhCcHHHHHHHHHHHhCeeeeeeeceecccCCCccccCCCch
Confidence 888888 5544 334445566666665322 22445666666654 3554421 122
Q ss_pred CEEEEec-cCcCCHHHHHHHHHHHHHHHHH
Q psy6548 208 NIIRLSP-ALNITEQELREGLDIIINTINT 236 (242)
Q Consensus 208 ~~lR~~~-~~~~t~e~i~~~~~~l~~~l~~ 236 (242)
..+|+.. ...-|.+++|..++.++++.+.
T Consensus 415 elvRltipRrtYt~~HmD~V~~a~~~l~e~ 444 (471)
T COG3033 415 ELVRLTIPRRTYTQTHMDFVIEAFKALKEN 444 (471)
T ss_pred heeeEeccccccchhHHHHHHHHHHHHHhc
Confidence 5799974 4556889999999998877654
No 387
>PF06838 Met_gamma_lyase: Methionine gamma-lyase ; InterPro: IPR009651 This family represents the aluminium resistance protein, which confers resistance to aluminium in bacteria [].; PDB: 3JZL_A 3I16_C 3GWP_A 3FD0_B 3HT4_F.
Probab=97.30 E-value=0.0071 Score=50.34 Aligned_cols=167 Identities=17% Similarity=0.231 Sum_probs=90.4
Q ss_pred CCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhh--CCEEEEeccccccCccCcccccccCCCCCCEEEee--ccccC
Q psy6548 19 NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQY--NVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILG--KALSG 94 (242)
Q Consensus 19 ~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~--~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~s--K~~~~ 94 (242)
+.+++++++.-.-+-+--...+-+.++++.++.|+. ++++++|.+|.+|...-++. .+..|++.-| |-.||
T Consensus 152 ~~~tk~v~IQRSrGYs~R~sl~i~~I~~~i~~vk~~~p~~iifVDNCYGEFvE~~EP~-----~vGADl~aGSLIKNpGG 226 (403)
T PF06838_consen 152 KPNTKMVLIQRSRGYSWRPSLTIEEIKEIIKFVKEINPDVIIFVDNCYGEFVETQEPT-----EVGADLMAGSLIKNPGG 226 (403)
T ss_dssp HTTEEEEEEE-S-TTSSS----HHHHHHHHHHHHHH-TTSEEEEE-TTTTTTSSS-GG-----GGT-SEEEEETTSGGGT
T ss_pred ccCceEEEEecCCCCCCCCCCCHHHHHHHHHHHHhhCCCeEEEEeCCcceeccccCcc-----ccchhheeccceeCCCC
Confidence 478999998765443333456667788888888774 77999999998775444432 3467888755 99998
Q ss_pred Cccc-hheeEeChhhhhccCCC--------CCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhhcCCC
Q psy6548 95 GLYP-ISAVLADDEVMGTLVPG--------THGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELRSRLSPD 165 (242)
Q Consensus 95 g~~~-~g~~~~~~~~~~~l~~~--------~~~~~~~~~~~~~~~a~a~l~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~ 165 (242)
|+-+ .||+++++++.+..... ..+.++..+.. +.-+ +...+..+...-+-+......+ +.++..
T Consensus 227 giAptGGYIaGr~~lVe~~a~RLTaPGiG~e~G~t~~~~R~-~~QG-----lFlAP~vV~eAlKgaif~A~~f-e~lG~~ 299 (403)
T PF06838_consen 227 GIAPTGGYIAGRKDLVERAAYRLTAPGIGKEVGATLGTNRL-MFQG-----LFLAPHVVGEALKGAIFAAALF-EKLGFE 299 (403)
T ss_dssp TT-SS-EEEEESHHHHHHHHHHHS-TTTGGGSS--TTTHHH-HHHH-----HHHHHHHHHHHHHHHHHHHHHH-HHTT-E
T ss_pred CccCcCCEEechHHHHHHHHhhhcCCccccccccCcchHHH-HHhH-----HhhchHHHHHHHHHHHHHHHHH-HHcCCc
Confidence 7655 45899999998876531 23334432211 1111 1112333333333344444445 556531
Q ss_pred C--CCeEeeeceeEEEEecCCchhHHHHHHHHHHC
Q psy6548 166 I--VPVVRGKGLLNAIVLDKSILEVYDVCIKMKDA 198 (242)
Q Consensus 166 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 198 (242)
+ .+..+..-.+..+.+... +....|++...+.
T Consensus 300 v~P~~~~~R~DiIQai~l~~~-e~l~~FC~~iQ~~ 333 (403)
T PF06838_consen 300 VSPKPDDPRSDIIQAIELGSP-EKLIAFCQGIQAA 333 (403)
T ss_dssp EES-TTS--SSS-EEEE-SSH-HHHHHHHHHHHHT
T ss_pred CCCCCCCCCCceEEEEECCCH-HHHHHHHHHHHhc
Confidence 1 112234456778888887 6777888887665
No 388
>COG1982 LdcC Arginine/lysine/ornithine decarboxylases [Amino acid transport and metabolism]
Probab=96.80 E-value=0.097 Score=46.37 Aligned_cols=197 Identities=15% Similarity=0.092 Sum_probs=94.8
Q ss_pred EEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEecccc-ccCccCcccccccCCCCCCEEEee--ccccCCccc
Q psy6548 22 ICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQT-GLGRTGKLLAIHYEDVRPDIVILG--KALSGGLYP 98 (242)
Q Consensus 22 ~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~-~~~~~g~~~~~~~~~~~~~~~~~s--K~~~~g~~~ 98 (242)
..+++..|.+ .| +... ++++.++++.+++++.+||+|- -++..+.... ...+...++++-| |.+++. ..
T Consensus 168 k~~vitnpTY--dG-v~~n---~~~i~~~~~~~~a~v~~deah~~~~~~~~~l~~-~~~~~~~~~~tqS~HK~l~al-SQ 239 (557)
T COG1982 168 KLAVITNPTY--DG-VCYN---LRKIVELLHHYGAWVLYDEAHPAHFDFSPMLPE-SALNGGADFVTQSTHKLLAAL-SQ 239 (557)
T ss_pred eeEEEecCcc--ce-Eeec---HHHHHHHHhhcCceEEhhhcCcccccccccCcc-hhhhcCceEEEechhhhhhhh-hh
Confidence 3455555543 25 3433 8899999999999999999983 2333332211 1112344666644 777754 34
Q ss_pred hheeEeC-------hhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHh-c--cH----HHHHHHHHHHHHHHHHhhcCC
Q psy6548 99 ISAVLAD-------DEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILE-E--NM----IENAYKMGEIFRSELRSRLSP 164 (242)
Q Consensus 99 ~g~~~~~-------~~~~~~l~~~~~~~~~~~~~~~~~~a~a~l~~~~~-~--~~----~~~~~~~~~~l~~~l~~~l~~ 164 (242)
.+++-.. +++.+.+.- +.+| +.+...++ .+.+.+.+.. . .+ ....-+.++.+++.. +..+.
T Consensus 240 aS~iHv~~~~~~~~~r~nea~~~--h~ST-SPsY~l~A-SlD~Ar~~~~~~G~~l~~~~~~~~i~~r~~~~~~~-~~~~~ 314 (557)
T COG1982 240 ASMIHVKDGRAVNHERFNEALMM--HQST-SPSYPLMA-SLDVARMQEGNAGRELWQEVIDEAIDFRKALRRLI-NEIGF 314 (557)
T ss_pred hHHHhhCCCccCCHHHHHHHHHH--HccC-CchHHHHH-HHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHH-HhcCC
Confidence 4444333 222222221 2222 22222332 2322332222 1 12 233344455555544 44331
Q ss_pred CCCCeEe----ee----------------ceeEEEEecCCchhHHHHHHHHHHCCceeccCCCCEEEEeccC--cCCHHH
Q psy6548 165 DIVPVVR----GK----------------GLLNAIVLDKSILEVYDVCIKMKDAGLVTKPISNNIIRLSPAL--NITEQE 222 (242)
Q Consensus 165 ~~~~~~~----~~----------------~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~lR~~~~~--~~t~e~ 222 (242)
--..... .. -.-+.+..+..+..+-.+.+.|.++|++...++...+-+.++. .....+
T Consensus 315 ~~~~~~~~~~~~~~whgf~~~~~~~~~lDP~Klti~tp~~Gipg~~v~~~L~e~gii~e~~~d~~~lll~~~~~gk~~~l 394 (557)
T COG1982 315 FPVLQPEKLDPPTGWHGFEDYADDQYFLDPTKLTITTPEFGIPGAIVAKYLREHGIIPEETGDYSNLLLFSPGIGKWQTL 394 (557)
T ss_pred eeeccccccCCcccccccccccccceeccccEEEEecCCCCCcHHHHHHHHHHcCCeeeecCCceeeEEeeeccchHHHH
Confidence 0000000 00 1112344445446788899999999999988765554443222 233344
Q ss_pred HHHHHHHHH
Q psy6548 223 LREGLDIII 231 (242)
Q Consensus 223 i~~~~~~l~ 231 (242)
++.+++.++
T Consensus 395 v~~L~~f~r 403 (557)
T COG1982 395 VDRLLEFKR 403 (557)
T ss_pred HHHHHHHHH
Confidence 444444443
No 389
>TIGR03811 tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcus type. This model represents tyrosine decarboxylases in the family of the Enterococcus faecalis enzyme Tdc. These enzymes often are encoded next to tyrosine/tyramine antiporter, together comprising a system in which tyrosine decarboxylation can protect against exposure to acid conditions. This clade differs from the archaeal tyrosine decarboxylases associated with methanofuran biosynthesis.
Probab=96.31 E-value=0.72 Score=41.92 Aligned_cols=135 Identities=19% Similarity=0.187 Sum_probs=73.7
Q ss_pred EEEEEEcccccCCCcccCCHHHHHHHHHHH---HhhCC--EEEEeccccccCcc---Cc-----ccc-----------c-
Q psy6548 22 ICAFMVEPIQGEAGAVVPDDGYLKKVRALC---SQYNV--LFIADEVQTGLGRT---GK-----LLA-----------I- 76 (242)
Q Consensus 22 ~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~---~~~~~--~li~De~~~~~~~~---g~-----~~~-----------~- 76 (242)
+.+|+..-.-...|.+=| +++|+++| ++||+ ++.+|.+|.|+... .. ++. +
T Consensus 279 ~~~VVataGTT~~GaiDp----l~eI~~l~~~~~~~gl~~~lHVDAAyGG~~~~l~~~~~~~~~p~~~~~~~~~~~~~f~ 354 (608)
T TIGR03811 279 ILGVVGVVGSTEEGAVDG----IDKIVALRNKLMKEGIYFYLHVDAAYGGYGRAIFLDEDDNFIPYDDLQEVHAEYGVFT 354 (608)
T ss_pred eEEEEEEcCCcCCcccCC----HHHHHHHHHHHHHcCCceeEeeeccccchhhhhhccccccccccchhhcccccccccc
Confidence 334444433444464433 88888888 77898 69999999875310 00 000 0
Q ss_pred ------------ccCCC-CCCEEE--eeccccCCccchheeEeCh-hhhhccCC---CC--CC---------CCCCCCH-
Q psy6548 77 ------------HYEDV-RPDIVI--LGKALSGGLYPISAVLADD-EVMGTLVP---GT--HG---------STYGGNP- 125 (242)
Q Consensus 77 ------------~~~~~-~~~~~~--~sK~~~~g~~~~g~~~~~~-~~~~~l~~---~~--~~---------~~~~~~~- 125 (242)
...++ ..|-++ +-|.+..+ +++|.++..+ ++.+.+.. .. .+ ++..++.
T Consensus 355 ~~~~~l~~~~~~~l~gle~ADSItvDpHK~g~~P-y~~G~ll~Rd~~~~~~~~~~a~Yl~~~~~~~p~~~g~~~legSR~ 433 (608)
T TIGR03811 355 EKKEYISREVYNAYKAISEAESVTIDPHKMGYIP-YSAGGIVIQDIRMRDVISYFATYVFEKGADIPALLGAYILEGSKA 433 (608)
T ss_pred cccccccHhHHHHHhcCcCceEEEeCcccccccC-CCeEEEEEeCHHHHHHHhcCcchhccccccCcccccccceecCCc
Confidence 00022 244444 66998877 7889877664 33332221 10 00 1112222
Q ss_pred -HHHHHHHHHHHHH--Hh---ccHHHHHHHHHHHHHHHHHhhc
Q psy6548 126 -LACKLAMTALDVI--LE---ENMIENAYKMGEIFRSELRSRL 162 (242)
Q Consensus 126 -~~~~~a~a~l~~~--~~---~~~~~~~~~~~~~l~~~l~~~l 162 (242)
...++.+.+++.+ .. ..+..+..+.++++.+.| +..
T Consensus 434 ga~AlklW~~lr~l~~G~~Gyg~~i~~~i~~A~~~~~~L-~~~ 475 (608)
T TIGR03811 434 GATAASVWAAHKVLPLNVTGYGKLIGASIEGAHRFYDFL-NNL 475 (608)
T ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHH-Hhc
Confidence 3355566777776 22 345667777888888888 553
No 390
>KOG2040|consensus
Probab=94.39 E-value=2 Score=39.00 Aligned_cols=196 Identities=14% Similarity=0.172 Sum_probs=109.1
Q ss_pred CCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEE-----eecccc
Q psy6548 19 NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVI-----LGKALS 93 (242)
Q Consensus 19 ~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~-----~sK~~~ 93 (242)
.+.++.+++.-+... |.+.+ +.++++.+++.+.++++---...+.-. ....+ ...|+++ |+=.+|
T Consensus 245 ~~~v~gvlvQYP~t~-G~i~d----~~el~~~a~~~~s~vv~atDLLaLtiL---rpPge--fGaDIavGSsQRFGVPlG 314 (1001)
T KOG2040|consen 245 SKDVSGVLVQYPDTE-GSVLD----FDELVELAHANGSLVVMATDLLALTIL---RPPGE--FGADIAVGSSQRFGVPLG 314 (1001)
T ss_pred ccceeEEEEEcCCCC-CcccC----HHHHHHHhhccCceEEEeehhhHHHcc---CChhh--cCceeeeccccccCcccc
Confidence 346888888766554 44554 888999999999887643111111001 11112 3457777 333444
Q ss_pred -CCccchheeEeChhhhhccCCCCCCCCC-----------------------CCCHH----HHHHHHHH-HHHHHh----
Q psy6548 94 -GGLYPISAVLADDEVMGTLVPGTHGSTY-----------------------GGNPL----ACKLAMTA-LDVILE---- 140 (242)
Q Consensus 94 -~g~~~~g~~~~~~~~~~~l~~~~~~~~~-----------------------~~~~~----~~~~a~a~-l~~~~~---- 140 (242)
|| .-.|++..++.+...+.....+-+- ..+.+ ++.|..++ +-..+-
T Consensus 315 YGG-PHAaFfAv~~~l~R~mPGRiiGvtkD~~gk~a~RLALQTREQHIrRDKATSNICTAQALLANmaAmyaiYHGp~gL 393 (1001)
T KOG2040|consen 315 YGG-PHAAFFAVSESLVRMMPGRIIGVTKDALGKEAYRLALQTREQHIRRDKATSNICTAQALLANMAAMYAIYHGPHGL 393 (1001)
T ss_pred CCC-chHHHHHHHHHHHhhCCCceEeeeecccccHHHHHHHHHHHHHhhhhccchhhhHHHHHHHHHHHHHhhhcCcHHH
Confidence 55 5677776666554433322111111 00111 11111111 111221
Q ss_pred ccHHHHHHHHHHHHHHHHHhhcCCCCCCeEeeeceeEEEEecCCchhHHHHHHHHHHCCceeccCCCCEEEEeccCcCCH
Q psy6548 141 ENMIENAYKMGEIFRSELRSRLSPDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITE 220 (242)
Q Consensus 141 ~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~lR~~~~~~~t~ 220 (242)
+++.+++......|.+.| +..+. +.....+|-.+.+.-. -.++++.++..+++|-++-...+.+-+++--..++
T Consensus 394 ~~IArrvh~~T~~l~~~l-~~agh----el~~k~fFDTLkI~~~-~s~~~~l~rA~~~~iNlr~~ed~tigvslDETv~~ 467 (1001)
T KOG2040|consen 394 KEIARRVHNLTLILAEGL-KNAGH----ELQHKPFFDTLKIRCG-CSAEEVLDRAAKRQINLRLVEDGTIGVSLDETVTE 467 (1001)
T ss_pred HHHHHHHHHHHHHHHHHH-hhcch----hhccccccceEEEEec-CcHHHHHHHHHhhcCceEEeecCceEEeecccccH
Confidence 234556666677777777 54442 1122224444444333 25788888888999999887788888888788899
Q ss_pred HHHHHHHHHHH
Q psy6548 221 QELREGLDIII 231 (242)
Q Consensus 221 e~i~~~~~~l~ 231 (242)
+|++.++..+.
T Consensus 468 ~DvddLl~vf~ 478 (1001)
T KOG2040|consen 468 KDVDDLLWVFN 478 (1001)
T ss_pred HHHHHHHHHHc
Confidence 99999998885
No 391
>COG4100 Cystathionine beta-lyase family protein involved in aluminum resistance [Inorganic ion transport and metabolism]
Probab=94.18 E-value=2.1 Score=35.10 Aligned_cols=177 Identities=12% Similarity=0.093 Sum_probs=92.9
Q ss_pred hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhh--CCEEEEeccccccCccCcccccccCCCCCCEEE--eec
Q psy6548 15 KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQY--NVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVI--LGK 90 (242)
Q Consensus 15 ~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~--~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~--~sK 90 (242)
....+++|++|.+.-.-+-.---..+-+.+++++++.++- ++++.+|.+|..|...-++ ..+..|++. +-|
T Consensus 159 ~~~i~~~tkli~IQRS~GY~~RpS~~I~eI~~~i~~vk~inpn~ivFVDNCYGEFvE~~EP-----t~vGaDliAGSLIK 233 (416)
T COG4100 159 KTAISDRTKLIGIQRSKGYAWRPSLSIAEIEEMITFVKEINPNVIVFVDNCYGEFVEEKEP-----THVGADLIAGSLIK 233 (416)
T ss_pred HHhcCccceEEEEEeccCcCCCCcccHHHHHHHHHHHHhcCCCEEEEEeccchhhhhccCc-----cccchhhhccceee
Confidence 3344678999988664332221233445688888888774 6788899999776433332 234456655 558
Q ss_pred cccCCccc-hheeEeChhhhhccCCCCCC-CCCCCCHHHHHHHHHHHH-HHHhccHHHHHHHHHHHHHHHHHhhcCCC-C
Q psy6548 91 ALSGGLYP-ISAVLADDEVMGTLVPGTHG-STYGGNPLACKLAMTALD-VILEENMIENAYKMGEIFRSELRSRLSPD-I 166 (242)
Q Consensus 91 ~~~~g~~~-~g~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~a~a~l~-~~~~~~~~~~~~~~~~~l~~~l~~~l~~~-~ 166 (242)
--|||+.. .||+.+++++.+...-.... +.-.-...++...+..++ +...+......-+-.......| ..++-. .
T Consensus 234 NpGGgiaktGGYiaGk~~~ve~~~yRlTaPGIG~e~Gat~~~l~~myqGlFlAPhvv~qa~Kga~fta~~l-e~lg~~~~ 312 (416)
T COG4100 234 NPGGGIAKTGGYIAGKAELVEAAAYRLTAPGIGREGGATLYSLREMYQGLFLAPHVVSQAVKGAHFTARFL-EKLGFPVN 312 (416)
T ss_pred CCCCceeeccceeechHHHHHhhceeeecCCccccccccHHHHHHHHhhhccchHHHHHHhhhhHHHHHHH-HHcCCCCC
Confidence 88877433 45788999888765422110 000000011111121111 1112333444444444444555 555531 1
Q ss_pred -CCeEeeeceeEEEEecCCchhHHHHHHHHHHC
Q psy6548 167 -VPVVRGKGLLNAIVLDKSILEVYDVCIKMKDA 198 (242)
Q Consensus 167 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 198 (242)
.+..+..-.+..+.+.+. ...-+|++.+...
T Consensus 313 P~~~~kRtDlIQavkf~~~-eKmIaFcqaiQ~a 344 (416)
T COG4100 313 PKYDAKRTDLIQAVKFGSK-EKMIAFCQAIQAA 344 (416)
T ss_pred CcccccccchhhheecCCH-HHHHHHHHHHhhc
Confidence 122233445667777776 5666777777544
No 392
>KOG1411|consensus
Probab=93.85 E-value=0.042 Score=45.42 Aligned_cols=188 Identities=18% Similarity=0.184 Sum_probs=96.7
Q ss_pred cccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcc----cccccC-CCCCCEEE---eecccc-CCccchh
Q psy6548 30 IQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKL----LAIHYE-DVRPDIVI---LGKALS-GGLYPIS 100 (242)
Q Consensus 30 ~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~----~~~~~~-~~~~~~~~---~sK~~~-~g~~~~g 100 (242)
.+|++| +=|+.+-+++|.++-++.+.+-++|-+|.||. .|.. .+...+ ....++.+ ++|-+| =| -|+|
T Consensus 207 aHNPTG-vDPt~eqw~ki~~~~~~k~~~pffDmAYQGfa-SG~~d~DA~avR~F~~~g~~~~laQSyAKNMGLYg-ERvG 283 (427)
T KOG1411|consen 207 AHNPTG-VDPTKEQWEKISDLIKEKNLLPFFDMAYQGFA-SGDLDKDAQAVRLFVEDGHEILLAQSYAKNMGLYG-ERVG 283 (427)
T ss_pred hcCCCC-CCccHHHHHHHHHHhhhccccchhhhhhcccc-cCCchhhHHHHHHHHHcCCceEeehhhhhhcchhh-hccc
Confidence 688888 88899999999999999999999999998883 3332 111111 11234443 889988 33 5677
Q ss_pred ee--Ee-ChhhhhccCCC---CCCCCCCCCHHHHHHHHHHHHHHHh-----------ccHHHHHHHHHHHHHHHHHhhcC
Q psy6548 101 AV--LA-DDEVMGTLVPG---THGSTYGGNPLACKLAMTALDVILE-----------ENMIENAYKMGEIFRSELRSRLS 163 (242)
Q Consensus 101 ~~--~~-~~~~~~~l~~~---~~~~~~~~~~~~~~~a~a~l~~~~~-----------~~~~~~~~~~~~~l~~~l~~~l~ 163 (242)
.+ ++ +.+...++..- ....-++.+|+ .+|.-+-..+.+ ....+++...++.+.+.| +..+
T Consensus 284 a~svvc~~ad~A~rV~SQlk~liRpmYSnPP~--hGArIv~~Il~d~~l~~~W~~evk~MadRi~~mR~~L~d~L-~~~g 360 (427)
T KOG1411|consen 284 ALSVVCKDADEAKRVESQLKILIRPMYSNPPL--HGARIVATILSDPDLKNQWLGEVKGMADRIISMRQQLFDAL-EKEG 360 (427)
T ss_pred eeEEEecCHHHHHHHHHHHHHHhcccccCCCc--cchhhhhhccCChHHHHHHHHHHHHHHHhhhhhHHHHhHHh-hcCC
Confidence 54 23 34444444321 01111222221 111111122211 224566667777777777 4333
Q ss_pred CCCCC--eEeeeceeEEEEecCCchhHHHHHHHHHHCCceeccCCCCEEEEeccCcCCHHHHHHHHHHHHHH
Q psy6548 164 PDIVP--VVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINT 233 (242)
Q Consensus 164 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~lR~~~~~~~t~e~i~~~~~~l~~~ 233 (242)
....+ -....|.|... . ...+++-..-.+..|+.+.. + |+++... +...++.+.+.|.++
T Consensus 361 s~~~W~hI~~QIGMF~fT---g--l~peQv~~l~ke~~iYmT~d--G--RiS~aG~-ss~nV~yLa~aih~v 422 (427)
T KOG1411|consen 361 SPGNWSHITKQIGMFCFT---G--LNPEQVDWLTKEYHIYLTKD--G--RISMAGL-SSSNVPYLADAIHAV 422 (427)
T ss_pred CCccHHHHHHhhheeeec---C--CCHHHHHHHHhhheeeeccC--c--eEeeccc-cccCCcccchhhHhH
Confidence 21111 11222333322 1 23344433344556666543 2 6665444 444556665555443
No 393
>KOG3843|consensus
Probab=93.81 E-value=0.067 Score=42.69 Aligned_cols=190 Identities=12% Similarity=0.101 Sum_probs=89.3
Q ss_pred HHHHHHHHHHHhhCCEEEEeccccccCccCc--ccc-cccCCC-CCCEEEeeccccCCccchheeE-eChhhhhccCCCC
Q psy6548 42 GYLKKVRALCSQYNVLFIADEVQTGLGRTGK--LLA-IHYEDV-RPDIVILGKALSGGLYPISAVL-ADDEVMGTLVPGT 116 (242)
Q Consensus 42 ~~l~~l~~l~~~~~~~li~De~~~~~~~~g~--~~~-~~~~~~-~~~~~~~sK~~~~g~~~~g~~~-~~~~~~~~l~~~~ 116 (242)
+-+++|+.+|..|+++-|+..+|. +..... ... ....|. +.-+-++-|-|.-+ .+.+.+. .+...++.+.+.+
T Consensus 174 d~leaiaaica~~diphivnnayg-lqsee~i~~iaa~~~~grida~vqsldknf~vp-vggaiia~fk~n~iq~iak~y 251 (432)
T KOG3843|consen 174 DNLEAIAAICAAHDIPHIVNNAYG-LQSEECIHKIAAAAECGRIDAFVQSLDKNFMVP-VGGAIIAAFKDNFIQEIAKMY 251 (432)
T ss_pred chHHHHHHHHHccCchhhhccccc-cchHHHHHHHHHHhhhccHHHHHHHhhhcceee-cchhHhhHhHHHHHHHHHHhC
Confidence 569999999999999999999883 211111 111 111222 12233367887722 1111222 3455665555433
Q ss_pred CCCCCCCCHHHHH-----HHHHH-HHHHHh-ccHHHHHHHHHHHHHHHHHhhcCCCCCCeEe--eec-eeEEEEecCCc-
Q psy6548 117 HGSTYGGNPLACK-----LAMTA-LDVILE-ENMIENAYKMGEIFRSELRSRLSPDIVPVVR--GKG-LLNAIVLDKSI- 185 (242)
Q Consensus 117 ~~~~~~~~~~~~~-----~a~a~-l~~~~~-~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~--~~~-~~~~~~~~~~~- 185 (242)
-+-..+.+.+-.. .+..+ .+.+.+ .+...++++....+.+.+ +. +..+.+ ..+ .+..-.+++..
T Consensus 252 pgrasa~ps~dllitll~~gqn~f~e~~~eqkemf~~l~~ki~~~ae~~----~e-~l~~~p~n~is~amtl~ti~~~k~ 326 (432)
T KOG3843|consen 252 PGRASASPSLDLLITLLSLGQNAFKELFGEQKEMFLKLRNKIIKFAEAI----GE-CLLETPENEISLAMTLKTIDEAKD 326 (432)
T ss_pred CCccccCccHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHh----hh-hhhcCCCchhhhhhhhccCChHHh
Confidence 3322222221111 11111 222211 222222222222222222 21 111111 111 12222222221
Q ss_pred hhHHHHHHHHHHCCceec---cC----------------------CCCEEEEeccCcCCHHHHHHHHHHHHHHHHHHh
Q psy6548 186 LEVYDVCIKMKDAGLVTK---PI----------------------SNNIIRLSPALNITEQELREGLDIIINTINTMA 238 (242)
Q Consensus 186 ~~~~~~~~~l~~~gi~~~---~~----------------------~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~~ 238 (242)
.-...|...|+.+||--. |. ...++.......++..|+|.+..+|.+.++.+.
T Consensus 327 kavt~~gsilfak~isgarvv~~~q~kttieg~ef~~f~sht~e~~~~yln~a~aigm~~hdld~~~~rl~~~~a~~~ 404 (432)
T KOG3843|consen 327 KAVTLFGSILFAKGISGARVVPLGQMKTTIEGCEFIGFGSHTNEQHCAYLNAACAIGMKDHDLDEFFNRLDRCLAAFR 404 (432)
T ss_pred hHHHHHHHHHHhccccCceEeeccccceeeeceEEeccccccCcCchhHhhHHHhcCCcHhHHHHHHHHHHHHHHHHH
Confidence 223567788888876432 11 123566666678899999999999998887654
No 394
>smart00642 Aamy Alpha-amylase domain.
Probab=75.08 E-value=8.4 Score=28.77 Aligned_cols=48 Identities=15% Similarity=0.106 Sum_probs=34.9
Q ss_pred CCCCEEEEEEcccccCCC-------c----------ccCCHHHHHHHHHHHHhhCCEEEEecccc
Q psy6548 18 SNPNICAFMVEPIQGEAG-------A----------VVPDDGYLKKVRALCSQYNVLFIADEVQT 65 (242)
Q Consensus 18 ~~~~~~~i~~e~~~~~~G-------~----------~~~~~~~l~~l~~l~~~~~~~li~De~~~ 65 (242)
++-.+.+|.+.|++.... . ..-+.+.++++++-|+++|+-+|.|=+..
T Consensus 29 ~~lG~~~I~l~Pi~~~~~~~~~~~gY~~~d~~~i~~~~Gt~~d~~~lv~~~h~~Gi~vilD~V~N 93 (166)
T smart00642 29 KDLGVTAIWLSPIFESPQGYPSYHGYDISDYKQIDPRFGTMEDFKELVDAAHARGIKVILDVVIN 93 (166)
T ss_pred HHCCCCEEEECcceeCCCCCCCCCCcCccccCCCCcccCCHHHHHHHHHHHHHCCCEEEEEECCC
Confidence 344577788888754331 1 23355789999999999999999997764
No 395
>PF09840 DUF2067: Uncharacterized protein conserved in archaea (DUF2067); InterPro: IPR019202 This family of archaeal proteins, have no known function.
Probab=63.24 E-value=40 Score=25.89 Aligned_cols=59 Identities=10% Similarity=0.233 Sum_probs=44.2
Q ss_pred EEEecCCchhHHHHHHHHHHC--Ccee-ccCCCCEEEEeccCcCCHHHHHHHHHHHHHHHHHHhh
Q psy6548 178 AIVLDKSILEVYDVCIKMKDA--GLVT-KPISNNIIRLSPALNITEQELREGLDIIINTINTMAA 239 (242)
Q Consensus 178 ~~~~~~~~~~~~~~~~~l~~~--gi~~-~~~~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~~~ 239 (242)
.+.+++. .+..+|++.+.+. ...+ .....+.+++. ...++.++......++++...+..
T Consensus 2 ~~~~~~~-~E~~~fle~l~~~~~~~~~~v~~k~n~l~I~--i~G~~~eike~~~~Ik~~~~~vr~ 63 (190)
T PF09840_consen 2 SFKFRDD-EECEEFLERLSKMVKSIYIYVEVKGNSLKIE--IQGYEKEIKEAIRRIKELVRRVRS 63 (190)
T ss_pred eEEcCCh-HHHHHHHHHHHhhccCcEEEEEEeCCEEEEE--EecChHHHHHHHHHHHHHHHHHHH
Confidence 3556666 6788899999877 5555 23346778887 667888999999999999888765
No 396
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=62.78 E-value=6 Score=32.62 Aligned_cols=24 Identities=17% Similarity=0.462 Sum_probs=20.6
Q ss_pred HHHHHHHHHH-HhhCCEEEEecccc
Q psy6548 42 GYLKKVRALC-SQYNVLFIADEVQT 65 (242)
Q Consensus 42 ~~l~~l~~l~-~~~~~~li~De~~~ 65 (242)
..+++|.++| +.++.+||+||+|.
T Consensus 159 sRl~ql~~W~g~dfdgvivfDEcH~ 183 (303)
T PF13872_consen 159 SRLDQLVDWCGEDFDGVIVFDECHK 183 (303)
T ss_pred chHHHHHHHHhcCCCceEEeccchh
Confidence 4699999999 45788999999994
No 397
>PF12138 Spherulin4: Spherulation-specific family 4; InterPro: IPR021986 This protein is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 250 and 398 amino acids in length. There is a conserved NPG sequence motif and there are two completely conserved G residues that may be functionally important. Starvation will often induce spherulation - the production of spores - and this process may involve DNA-methylation. Changes in the methylation of spherulin4 are associated with the formation of spherules, but these changes are probably transient. Methylation of the gene accompanies its transcriptional activation, and spherulin4 mRNA is only detectable in late spherulating cultures and mature spherules. It is a spherulation-specific protein.
Probab=60.28 E-value=21 Score=28.72 Aligned_cols=57 Identities=19% Similarity=0.191 Sum_probs=39.7
Q ss_pred cccccCCCChhh-----hcC--CCCCEEEEEEcccccCCCc--ccCCHHHHHHHHHHHHhhCCEEE
Q psy6548 3 LQFPVKSKQVPA-----KLK--SNPNICAFMVEPIQGEAGA--VVPDDGYLKKVRALCSQYNVLFI 59 (242)
Q Consensus 3 ~~~~~~~~d~~~-----~~~--~~~~~~~i~~e~~~~~~G~--~~~~~~~l~~l~~l~~~~~~~li 59 (242)
|.|..|..+... .++ .......+|++|.+++|.. ..|+..+...+.++-+.-|+.+|
T Consensus 6 PlY~yP~~~~~~W~~l~~a~~~~p~~~f~vIiNP~sGPG~~~~~~pd~~Y~~~i~~L~~~~nv~vl 71 (253)
T PF12138_consen 6 PLYIYPLPGAAAWDPLYDAIAAHPSVPFTVIINPNSGPGSAPDPWPDANYAAAIPRLNSYANVRVL 71 (253)
T ss_pred EEeeCCCCCCcchHHHHHHHhcCCCCcEEEEEcCCCCCCCCCCCCCCHHHHHHHHHHHhcCCCcEE
Confidence 456677555422 122 2445688999998888832 44889999999999777777766
No 398
>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]
Probab=59.89 E-value=10 Score=29.63 Aligned_cols=22 Identities=36% Similarity=0.685 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHhhCCEEEEec
Q psy6548 41 DGYLKKVRALCSQYNVLFIADE 62 (242)
Q Consensus 41 ~~~l~~l~~l~~~~~~~li~De 62 (242)
.+..+++.++|++|++.+|+++
T Consensus 51 ~~~a~~~~~lc~~~~v~liINd 72 (211)
T COG0352 51 LALAEKLRALCQKYGVPLIIND 72 (211)
T ss_pred HHHHHHHHHHHHHhCCeEEecC
Confidence 3567899999999999998876
No 399
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=58.70 E-value=14 Score=33.80 Aligned_cols=35 Identities=17% Similarity=0.083 Sum_probs=29.3
Q ss_pred cCCHHHHHHHHHHHHhhCCEEEEeccccccCccCc
Q psy6548 38 VPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGK 72 (242)
Q Consensus 38 ~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~ 72 (242)
.-+++.++++++-|+++|+-||+|=|+.-|+..+.
T Consensus 210 yGtPedfk~fVD~aH~~GIgViLD~V~~HF~~d~~ 244 (628)
T COG0296 210 YGTPEDFKALVDAAHQAGIGVILDWVPNHFPPDGN 244 (628)
T ss_pred CCCHHHHHHHHHHHHHcCCEEEEEecCCcCCCCcc
Confidence 44668899999999999999999999976765443
No 400
>COG0108 RibB 3,4-dihydroxy-2-butanone 4-phosphate synthase [Coenzyme metabolism]
Probab=58.55 E-value=17 Score=28.06 Aligned_cols=37 Identities=11% Similarity=0.231 Sum_probs=27.8
Q ss_pred CCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEE
Q psy6548 19 NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIA 60 (242)
Q Consensus 19 ~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~ 60 (242)
.-+++++|+|-.+- .|.... .+++.+++++||+.+|.
T Consensus 154 Gl~Pa~VicEi~~~-dG~mar----~~~~~~fa~~h~l~~it 190 (203)
T COG0108 154 GLKPAGVICEIMND-DGTMAR----LPELEEFAKEHGLPVIT 190 (203)
T ss_pred CCCCcEEEEEEeCC-CccccC----hHHHHHHHHHcCCcEEE
Confidence 33567888888766 554554 77888999999999883
No 401
>KOG2790|consensus
Probab=56.86 E-value=1.1e+02 Score=25.26 Aligned_cols=107 Identities=11% Similarity=0.007 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHHhc-c---HHHHHHHHHHHHHHHHHhhcCC--CCCCeEeeec-eeEEEEecCCchhHHHHHHHHHHCC
Q psy6548 127 ACKLAMTALDVILEE-N---MIENAYKMGEIFRSELRSRLSP--DIVPVVRGKG-LLNAIVLDKSILEVYDVCIKMKDAG 199 (242)
Q Consensus 127 ~~~~a~a~l~~~~~~-~---~~~~~~~~~~~l~~~l~~~l~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~g 199 (242)
.+.+.--.++++.+. + +.+...++.+.+-+.+ ..-.. .++-++...+ .-+.|.+.++ ....+|.+...+++
T Consensus 252 ~iy~~~Lv~~~il~~GGl~a~e~~n~~KskllYd~i-D~s~gfy~cpVe~~~RS~MNV~Fri~~d-~Le~eFLkeA~~~~ 329 (370)
T KOG2790|consen 252 GIYVMGLVFEWILEKGGLAAMEKLNQEKSKLLYDAI-DNSNGFYRCPVEPSVRSRMNVPFRIEKD-ELEAEFLKEAAKEH 329 (370)
T ss_pred eeeehhhHHHHHHhcccHHHHHHHHHHHHHHHHHHH-HhcCCeEEcccchhhhhhcccceeecch-HHHHHHHHHHHHhh
Confidence 333333356666542 2 3444555666666666 33221 1222222222 3345666665 55667777777776
Q ss_pred ceeccC--CCCEEEEeccCcCCHHHHHHHHHHHHHHHH
Q psy6548 200 LVTKPI--SNNIIRLSPALNITEQELREGLDIIINTIN 235 (242)
Q Consensus 200 i~~~~~--~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~ 235 (242)
.+--.+ .-+.+|-++=-..+-++.++++.-+++..+
T Consensus 330 mv~LKGhRSVGGiRASlYNAisv~~~q~L~~~m~~F~k 367 (370)
T KOG2790|consen 330 MVQLKGHRSVGGIRASLYNAISVEEVQKLAAFMKEFQK 367 (370)
T ss_pred hhccccccccccchhhhhccccHHHHHHHHHHHHHHHH
Confidence 554333 456799997667789998888877766544
No 402
>cd04915 ACT_AK-Ectoine_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and various other halotolerant or halophilic bacteria. Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinas
Probab=54.66 E-value=46 Score=20.33 Aligned_cols=46 Identities=7% Similarity=0.144 Sum_probs=34.0
Q ss_pred hHHHHHHHHHHCCcee--ccCCCCEEEEeccCcCCHHHHHHHHHHHHHHH
Q psy6548 187 EVYDVCIKMKDAGLVT--KPISNNIIRLSPALNITEQELREGLDIIINTI 234 (242)
Q Consensus 187 ~~~~~~~~l~~~gi~~--~~~~~~~lR~~~~~~~t~e~i~~~~~~l~~~l 234 (242)
....+.+.|.+.||-+ ...+..-++++ ...++++.+++++.|-+.+
T Consensus 17 v~~ki~~~L~~~~I~v~~i~~~~s~~~is--~~V~~~~~~~av~~Lh~~f 64 (66)
T cd04915 17 VLARGLAALAEAGIEPIAAHQSMRNVDVQ--FVVDRDDYDNAIKALHAAL 64 (66)
T ss_pred HHHHHHHHHHHCCCCEEEEEecCCeeEEE--EEEEHHHHHHHHHHHHHHH
Confidence 4567888888999888 33344556666 5678899999999987654
No 403
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=54.24 E-value=19 Score=27.07 Aligned_cols=46 Identities=13% Similarity=0.205 Sum_probs=25.4
Q ss_pred hcCCC-CCEEEEEEcccccCCCcccCC----HHHHHHHHHHHHhhCCEEEE
Q psy6548 15 KLKSN-PNICAFMVEPIQGEAGAVVPD----DGYLKKVRALCSQYNVLFIA 60 (242)
Q Consensus 15 ~~~~~-~~~~~i~~e~~~~~~G~~~~~----~~~l~~l~~l~~~~~~~li~ 60 (242)
+.+.. .++.+|++++.....+.-..+ .++++.+.++|+++|+.+++
T Consensus 134 ~~~~~~~~~~lvviD~l~~~~~~~~~~~~~~~~~~~~l~~la~~~~~~vi~ 184 (193)
T PF13481_consen 134 AALKELYGPDLVVIDPLQSLHDGDENSNSAVAQLMQELKRLAKEYGVAVIL 184 (193)
T ss_dssp HHHTT----SEEEEE-GGGG--S-TT-HHHHHHHHHHHHHHHHHH--EEEE
T ss_pred HHHhhcCCCcEEEEcCHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCEEEE
Confidence 33445 678899999977666432211 35788899999999987663
No 404
>cd04920 ACT_AKiii-DAPDC_2 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC). This CD includes the second of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=52.77 E-value=35 Score=20.61 Aligned_cols=46 Identities=7% Similarity=-0.036 Sum_probs=33.9
Q ss_pred hHHHHHHHHHHCCceeccCCCCEEEEeccCcCCHHHHHHHHHHHHHHH
Q psy6548 187 EVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTI 234 (242)
Q Consensus 187 ~~~~~~~~l~~~gi~~~~~~~~~lR~~~~~~~t~e~i~~~~~~l~~~l 234 (242)
....+.+.|.+.|+.+...+..-++++ +..+.++.++++++|-+.+
T Consensus 16 v~~~~~~~L~~~~i~~i~~~~s~~~is--~vv~~~d~~~av~~LH~~f 61 (63)
T cd04920 16 KLGPALEVFGKKPVHLVSQAANDLNLT--FVVDEDQADGLCARLHFQL 61 (63)
T ss_pred HHHHHHHHHhcCCceEEEEeCCCCeEE--EEEeHHHHHHHHHHHHHHH
Confidence 456777788778888766556656666 5578889999999887654
No 405
>PRK03892 ribonuclease P protein component 3; Provisional
Probab=51.16 E-value=15 Score=28.47 Aligned_cols=49 Identities=12% Similarity=0.257 Sum_probs=37.7
Q ss_pred hhh---hcCCCCCEEE-EEEcc-cccCCCcccCCHHHHHHHHHHHHhhCCEEEE
Q psy6548 12 VPA---KLKSNPNICA-FMVEP-IQGEAGAVVPDDGYLKKVRALCSQYNVLFIA 60 (242)
Q Consensus 12 ~~~---~~~~~~~~~~-i~~e~-~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~ 60 (242)
++. +.+.+++++. +.+.| ..+.++.++-.-..++++.+++++|++++++
T Consensus 118 ~dHVLAKlAa~n~VAIe~~L~plL~~~G~~Rar~L~~~r~~l~L~rKYd~P~VI 171 (216)
T PRK03892 118 IDHVLARMAAKRGVAIGFSLSPLLRANPYERANILRFMMKAWQLVNKYKVPRFI 171 (216)
T ss_pred ccHHHHHHHHHcCeEEEEecHHHHhhCchhHHHHHHHHHHHHHHHHHcCCCEEE
Confidence 555 5566777776 45555 4777788887778899999999999998875
No 406
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=50.37 E-value=16 Score=29.57 Aligned_cols=26 Identities=15% Similarity=0.116 Sum_probs=23.2
Q ss_pred CHHHHHHHHHHHHhhCCEEEEecccc
Q psy6548 40 DDGYLKKVRALCSQYNVLFIADEVQT 65 (242)
Q Consensus 40 ~~~~l~~l~~l~~~~~~~li~De~~~ 65 (242)
+.+.+++|++.|+++|+-||.|=+..
T Consensus 50 t~~d~~~Lv~~~h~~gi~VilD~V~N 75 (316)
T PF00128_consen 50 TMEDFKELVDAAHKRGIKVILDVVPN 75 (316)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEEETS
T ss_pred hhhhhhhhhhccccccceEEEeeecc
Confidence 45689999999999999999998874
No 407
>PF03652 UPF0081: Uncharacterised protein family (UPF0081); InterPro: IPR005227 Holliday junction resolvases (HJRs) are key enzymes of DNA recombination. The principal HJRs are now known or confidently predicted for all bacteria and archaea whose genomes have been completely sequenced, with many species encoding multiple potential HJRs. Structural and evolutionary relationships of HJRs and related nucleases suggests that the HJR function has evolved independently from at least four distinct structural folds, namely RNase H, endonuclease, endonuclease VII-colicin E and RusA (IPR008822 from INTERPRO): The endonuclease fold, whose structural prototypes are the phage exonuclease, the very short patch repair nuclease (Vsr) and type II restriction enzymes, is shown to encompass by far a greater diversity of nucleases than previously suspected. This fold unifies archaeal HJRs (IPR002732 from INTERPRO), repair nucleases such as RecB (IPR004586 from INTERPRO) and Vsr (IPR004603 from INTERPRO), restriction enzymes and a variety of predicted nucleases whose specific activities remain to be determined. The RNase H fold characterises the RuvC family (IPR002176 from INTERPRO), which is nearly ubiquitous in bacteria, and in addition the YqgF family (IPR005227 from INTERPRO). The proteins of this family, typified by Escherichia coli YqgF, are likely to function as an alternative to RuvC in most bacteria, but could be the principal HJRs in low-GC Gram-positive bacteria and Aquifex. Endonuclease VII of phage T4 (IPR004211 from INTERPRO) is shown to serve as a structural template for many nucleases, including McrA and other type II restriction enzymes. Together with colicin E7, endonuclease VII defines a distinct metal-dependent nuclease fold. Horizontal gene transfer, lineage-specific gene loss and gene family expansion, and non-orthologous gene displacement seem to have been major forces in the evolution of HJRs and related nucleases. A remarkable case of displacement is seen in the Lyme disease spirochete Borrelia burgdorferi, which does not possess any of the typical HJRs, but instead encodes, in its chromosome and each of the linear plasmids, members of the exonuclease family predicted to function as HJRs. The diversity of HJRs and related nucleases in bacteria and archaea contrasts with their near absence in eukaryotes. The few detected eukaryotic representatives of the endonuclease fold and the RNase H fold have probably been acquired from bacteria via horizontal gene transfer. The identity of the principal HJR(s) involved in recombination in eukaryotes remains uncertain; this function could be performed by topoisomerase IB or by a novel, so far undetected, class of enzymes. Likely HJRs and related nucleases were identified in the genomes of numerous bacterial and eukaryotic DNA viruses. Gene flow between viral and cellular genomes has probably played a major role in the evolution of this class of enzymes. This family represents the YqgF family of putative Holliday junction resolvases. With the exception of the spirochetes, the YqgF family is represented in all bacterial lineages, including the mycoplasmas with their highly degenerate genomes. The RuvC resolvases are conspicuously absent in the low-GC Gram-positive bacterial lineage, with the exception of Ureaplasma parvum (Ureaplasma urealyticum biotype 1) (Q9PQY7 from SWISSPROT, []). Furthermore, loss of function ruvC mutants of E. coli show a residual HJR activity that cannot be ascribed to the prophage-encoded RusA resolvase []. This suggests that the YqgF family proteins could be alternative HJRs whose function partially overlaps with that of RuvC [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0006281 DNA repair, 0006310 DNA recombination, 0006974 response to DNA damage stimulus, 0005737 cytoplasm; PDB: 1NU0_A 1OVQ_A 1NMN_B 1VHX_B 1IV0_A.
Probab=50.22 E-value=45 Score=23.94 Aligned_cols=51 Identities=18% Similarity=0.165 Sum_probs=33.3
Q ss_pred hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHh-h-CCEE-EEecccc
Q psy6548 15 KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQ-Y-NVLF-IADEVQT 65 (242)
Q Consensus 15 ~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~-~-~~~l-i~De~~~ 65 (242)
+.+.+.++..+++=-+.++.|..-+.....++.++..++ + ++.+ .+||-++
T Consensus 45 ~li~~~~i~~iVvGlP~~~~G~~~~~~~~v~~f~~~L~~~~~~ipV~~~DEr~T 98 (135)
T PF03652_consen 45 KLIEEYQIDGIVVGLPLNMDGSESEQARRVRKFAEELKKRFPGIPVILVDERLT 98 (135)
T ss_dssp HHHHHCCECEEEEEEEBBCTSSC-CCHHHHHHHHHHHHHHH-TSEEEEEECSCS
T ss_pred HHHHHhCCCEEEEeCCcccCCCccHHHHHHHHHHHHHHHhcCCCcEEEECCChh
Confidence 444566777777766777777777766666666555544 4 8876 5999875
No 408
>PRK11633 cell division protein DedD; Provisional
Probab=48.45 E-value=1.4e+02 Score=23.72 Aligned_cols=58 Identities=14% Similarity=0.204 Sum_probs=42.5
Q ss_pred eEEEEecCCc--hhHHHHHHHHHHCCceecc-----CCCCEEEEeccCcCCHHHHHHHHHHHHHH
Q psy6548 176 LNAIVLDKSI--LEVYDVCIKMKDAGLVTKP-----ISNNIIRLSPALNITEQELREGLDIIINT 233 (242)
Q Consensus 176 ~~~~~~~~~~--~~~~~~~~~l~~~gi~~~~-----~~~~~lR~~~~~~~t~e~i~~~~~~l~~~ 233 (242)
-|.+.+..-. .+++.+...|...|+-... .++...|+...-..+.++.++...+|++.
T Consensus 149 ~~vVQlgaf~n~~~A~~l~~kL~~~G~~Ay~~~~~~~~G~~tRV~VGP~~sk~~ae~~~~~Lk~~ 213 (226)
T PRK11633 149 AYVVQLGALKNADKVNEIVAKLRLSGYRVYTVPSTPVQGKITRIYVGPDASKDKLKGSLGELKQL 213 (226)
T ss_pred cEEEEecccCCHHHHHHHHHHHHHCCCeeEEEeeecCCCcEEEEEeCCCCCHHHHHHHHHHHHHh
Confidence 3444444322 6788899999999987753 34456777776788999999999999774
No 409
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=47.43 E-value=19 Score=30.85 Aligned_cols=53 Identities=8% Similarity=0.043 Sum_probs=34.6
Q ss_pred CCCChhh--hcCCCCCEEEEEEcccccCCC--------cccCCHHHHHHHHHHHHhhCCEEEE
Q psy6548 8 KSKQVPA--KLKSNPNICAFMVEPIQGEAG--------AVVPDDGYLKKVRALCSQYNVLFIA 60 (242)
Q Consensus 8 ~~~d~~~--~~~~~~~~~~i~~e~~~~~~G--------~~~~~~~~l~~l~~l~~~~~~~li~ 60 (242)
+-.+++. +.+.+.++..+++++.+.... ....-++.+.+|.++++++|+.++.
T Consensus 143 ~e~~le~I~~~i~~~~~~lVVIDSIq~l~~~~~~~~~g~~~qvr~~~~~L~~lak~~~itvil 205 (372)
T cd01121 143 AETNLEDILASIEELKPDLVIIDSIQTVYSSELTSAPGSVSQVRECTAELMRFAKERNIPIFI 205 (372)
T ss_pred ccCcHHHHHHHHHhcCCcEEEEcchHHhhccccccCCCCHHHHHHHHHHHHHHHHHcCCeEEE
Confidence 3445555 445566889999999866421 1122234567788999999987653
No 410
>PF13113 DUF3970: Protein of unknown function (DUF3970)
Probab=47.28 E-value=28 Score=21.00 Aligned_cols=19 Identities=32% Similarity=0.364 Sum_probs=15.9
Q ss_pred EEEeccCcCCHHHHHHHHHHHHH
Q psy6548 210 IRLSPALNITEQELREGLDIIIN 232 (242)
Q Consensus 210 lR~~~~~~~t~e~i~~~~~~l~~ 232 (242)
+|+. .++|||+++++.+.+
T Consensus 4 VRl~----G~~eEi~~fi~~~~~ 22 (60)
T PF13113_consen 4 VRLS----GTKEEIEEFIKSFEK 22 (60)
T ss_pred EEec----CCHHHHHHHHHhhhh
Confidence 6776 789999999998876
No 411
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=47.27 E-value=21 Score=30.98 Aligned_cols=57 Identities=11% Similarity=0.079 Sum_probs=42.5
Q ss_pred cccccCCCChhh--hcCCCCCEEEEEEcccccCC--------CcccCCHHHHHHHHHHHHhhCCEEE
Q psy6548 3 LQFPVKSKQVPA--KLKSNPNICAFMVEPIQGEA--------GAVVPDDGYLKKVRALCSQYNVLFI 59 (242)
Q Consensus 3 ~~~~~~~~d~~~--~~~~~~~~~~i~~e~~~~~~--------G~~~~~~~~l~~l~~l~~~~~~~li 59 (242)
+++.++-.++++ +.+.+.++.+++++++|... |.+..-++--.+|.++|+..|+.++
T Consensus 148 ~l~l~aEt~~e~I~~~l~~~~p~lvVIDSIQT~~s~~~~SapGsVsQVRe~t~~L~~~AK~~~i~~f 214 (456)
T COG1066 148 NLYLLAETNLEDIIAELEQEKPDLVVIDSIQTLYSEEITSAPGSVSQVREVAAELMRLAKTKNIAIF 214 (456)
T ss_pred ceEEehhcCHHHHHHHHHhcCCCEEEEeccceeecccccCCCCcHHHHHHHHHHHHHHHHHcCCeEE
Confidence 456667777888 66777889999999865432 5555556677889999999999765
No 412
>smart00839 ELFV_dehydrog Glutamate/Leucine/Phenylalanine/Valine dehydrogenase. Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related. They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction.
Probab=46.91 E-value=89 Score=21.15 Aligned_cols=49 Identities=16% Similarity=0.206 Sum_probs=29.8
Q ss_pred HHHHHHHCCceeccC----CCCEEEEeccCcC----CHHHHH-HHHHHHHHHHHHHhh
Q psy6548 191 VCIKMKDAGLVTKPI----SNNIIRLSPALNI----TEQELR-EGLDIIINTINTMAA 239 (242)
Q Consensus 191 ~~~~l~~~gi~~~~~----~~~~lR~~~~~~~----t~e~i~-~~~~~l~~~l~~~~~ 239 (242)
-.+.|.++||.+.|. .++.+....-... +++++. +..+.+.+.+.++.+
T Consensus 40 a~~~L~~rGi~~~PD~~~NaGGvi~s~~E~~~~~~~~~e~v~~~~~~~i~~~~~~v~~ 97 (102)
T smart00839 40 ADDILEDRGVLYAPDFAANAGGVIVSALEMLQNLARTAEEVFTDLSEIMRNALEEIFE 97 (102)
T ss_pred HHHHHHHCCCEEcCcceecCCCEEeehhhhhcccCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 567788999999885 2333332221112 566655 777777777766543
No 413
>PF00926 DHBP_synthase: 3,4-dihydroxy-2-butanone 4-phosphate synthase; InterPro: IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase (4.1.99.12 from EC) (DHBP synthase) (RibB) catalyses the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate, the latter serving as the biosynthetic precursor for the xylene ring of riboflavin []. In Photobacterium leiognathi, the riboflavin synthesis genes ribB (DHBP synthase), ribE (riboflavin synthase), ribH (lumazone synthase) and ribA (GTP cyclohydrolase II) all reside in the lux operon []. RibB is sometimes found as a bifunctional enzyme with GTP cyclohydrolase II that catalyses the first committed step in the biosynthesis of riboflavin (IPR000926 from INTERPRO). No sequences with significant homology to DHBP synthase are found in the metazoa.; GO: 0008686 3,4-dihydroxy-2-butanone-4-phosphate synthase activity, 0009231 riboflavin biosynthetic process; PDB: 1K4O_A 1K4L_A 1K4P_A 1K49_A 1K4I_A 1TKU_A 1TKS_B 2RIS_A 2RIU_A 3MIO_A ....
Probab=46.51 E-value=36 Score=26.20 Aligned_cols=37 Identities=8% Similarity=0.197 Sum_probs=26.5
Q ss_pred CCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEE
Q psy6548 19 NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIA 60 (242)
Q Consensus 19 ~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~ 60 (242)
.-+..++++|-+.. .|.... .+++.+++++||+.++.
T Consensus 150 Gl~p~avi~eil~~-dG~~~~----~~~~~~fA~~~~l~~vs 186 (194)
T PF00926_consen 150 GLSPVAVICEILDD-DGDMAR----RDELEEFAKKHGLPIVS 186 (194)
T ss_dssp TS-SBEEEEEBBET-TSSBHC----HHHHHHHHHHTT-EEEE
T ss_pred CCCCcEEEEEEeCC-CCCcCC----HHHHHHHHHHcCCcEEE
Confidence 33567888888755 665554 88888999999999883
No 414
>TIGR00789 flhB_rel flhB C-terminus-related protein. This model describes a short protein (80-93 residues) homologous to the C-terminus of the flagellar biosynthetic protein FlhB. It is found so far only in species that also have FlhB. In a phylogenetic tree based on alignment of both this family and the homologous region of FlhB and its homologs, the members of this family form a monophyletic set.
Probab=45.85 E-value=20 Score=23.35 Aligned_cols=24 Identities=4% Similarity=0.130 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHhhCCEEEEecccc
Q psy6548 42 GYLKKVRALCSQYNVLFIADEVQT 65 (242)
Q Consensus 42 ~~l~~l~~l~~~~~~~li~De~~~ 65 (242)
+.-++|+++++++|++++.|....
T Consensus 27 ~~A~~I~~~A~e~~VPi~~~~~LA 50 (82)
T TIGR00789 27 EVAERIIEIAKKHGIPIVEDPDLV 50 (82)
T ss_pred HHHHHHHHHHHHcCCCEEeCHHHH
Confidence 457889999999999999998664
No 415
>TIGR00506 ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase. Several members of the family are bifunctional, involving both ribA and ribB function. In these cases, ribA tends to be on the C-terminal end of the protein and ribB tends to be on the N-terminal.
Probab=43.74 E-value=45 Score=25.78 Aligned_cols=34 Identities=12% Similarity=0.217 Sum_probs=25.9
Q ss_pred CEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEE
Q psy6548 21 NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFI 59 (242)
Q Consensus 21 ~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li 59 (242)
...++++|-++. .|.... .+++.+++++|++.+|
T Consensus 157 ~p~~vicEil~~-dG~m~~----~~~~~~fA~~~~l~~i 190 (199)
T TIGR00506 157 KPAGVICEMMND-DGTMAR----KPELMEYAKKHNLKLI 190 (199)
T ss_pred CceEEEEEEeCC-CCCccC----HHHHHHHHHHcCCcEE
Confidence 467888888655 565444 7788899999999987
No 416
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=43.59 E-value=24 Score=27.75 Aligned_cols=43 Identities=16% Similarity=0.236 Sum_probs=27.9
Q ss_pred CCCCEEEEEEcccccCCCcc-cCC-----HHHHHHHHHHHHhhCCEEEE
Q psy6548 18 SNPNICAFMVEPIQGEAGAV-VPD-----DGYLKKVRALCSQYNVLFIA 60 (242)
Q Consensus 18 ~~~~~~~i~~e~~~~~~G~~-~~~-----~~~l~~l~~l~~~~~~~li~ 60 (242)
...++..|++++.+...... ... .+.++.|.++|+++|+.+++
T Consensus 120 ~~~~~~~vvID~l~~l~~~~~~~~~~~~~~~~~~~L~~la~~~~~~ii~ 168 (242)
T cd00984 120 KEHGLGLIVIDYLQLMSGSKKKGNRQQEVAEISRSLKLLAKELNVPVIA 168 (242)
T ss_pred HhcCCCEEEEcCchhcCCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEE
Confidence 34578889999876543211 111 13577888888899988764
No 417
>cd04751 Commd3 COMM_Domain containing protein 3. The COMM Domain is found at the C-terminus of a variety of proteins; presumably all COMM_Domain containing proteins are located in the nucleus and the COMM domain plays a role in protein-protein interactions. Several family members have been shown to bind and inhibit NF-kappaB.
Probab=43.03 E-value=1e+02 Score=20.62 Aligned_cols=27 Identities=11% Similarity=0.219 Sum_probs=22.9
Q ss_pred EEEEeccCcCCHHHHHHHHHHHHHHHHHHhh
Q psy6548 209 IIRLSPALNITEQELREGLDIIINTINTMAA 239 (242)
Q Consensus 209 ~lR~~~~~~~t~e~i~~~~~~l~~~l~~~~~ 239 (242)
.+.|+ ++.|++..++..|+++-+.+.+
T Consensus 66 ~i~f~----c~~e~L~~Li~~Lk~A~~~~e~ 92 (95)
T cd04751 66 DINFT----CTLEQLQDLVNKLKDAAKNIER 92 (95)
T ss_pred eEEEE----eCHHHHHHHHHHHHHHHHHHHH
Confidence 56666 8999999999999999887654
No 418
>PRK05409 hypothetical protein; Provisional
Probab=42.07 E-value=39 Score=27.71 Aligned_cols=33 Identities=24% Similarity=0.439 Sum_probs=28.7
Q ss_pred ccCCCcccCCHHHHHHHHHHHHhhCCEEEEecc
Q psy6548 31 QGEAGAVVPDDGYLKKVRALCSQYNVLFIADEV 63 (242)
Q Consensus 31 ~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~ 63 (242)
.+-+|.-.+++++++++.+++++++...++|..
T Consensus 65 LslGs~~~ld~~~L~~l~~l~~~~~~~~vSeHL 97 (281)
T PRK05409 65 LSLGGAAPLDKDHLKRLKALADRYQPPLVSEHL 97 (281)
T ss_pred cccCCCCCCCHHHHHHHHHHHHHHCCCEEEeee
Confidence 456676788999999999999999999999953
No 419
>COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism]
Probab=41.81 E-value=1.9e+02 Score=26.08 Aligned_cols=49 Identities=10% Similarity=0.191 Sum_probs=30.1
Q ss_pred CCCEEEEEEcccccCCCccc-CCHHHHHHHHHHHHhhCCEEEEecccccc
Q psy6548 19 NPNICAFMVEPIQGEAGAVV-PDDGYLKKVRALCSQYNVLFIADEVQTGL 67 (242)
Q Consensus 19 ~~~~~~i~~e~~~~~~G~~~-~~~~~l~~l~~l~~~~~~~li~De~~~~~ 67 (242)
++++..|+.+.+-..+|..- .+.+.-.+.+++|..++++|++=.=..||
T Consensus 322 ~G~pVGiIANqp~~~~G~l~~~sa~KaArFI~~cd~~~iPlv~L~d~pGF 371 (526)
T COG4799 322 DGRPVGIIANQPRHLGGVLDIDSADKAARFIRLCDAFNIPLVFLVDTPGF 371 (526)
T ss_pred CCEEEEEEecCccccccccchHHHHHHHHHHHhhhccCCCeEEEeCCCCC
Confidence 56677777776555555432 23334556679999999988743223444
No 420
>PF05036 SPOR: Sporulation related domain; InterPro: IPR007730 This 70 residue domain is composed of two 35 residue repeats that are found in bacterial proteins involved in sporulation and cell division, such as FtsN, CwlM and RlpA. This repeat might be involved in binding peptidoglycan. FtsN is an essential cell division protein with a simple bitopic topology: a short N-terminal cytoplasmic segment fused to a large carboxy periplasmic domain through a single transmembrane domain. The repeats lie at the periplasmic C terminus, which has an RNP-like fold []. FtsN localises to the septum ring complex. The CwlM protein is a cell wall hydrolase, where the C-terminal region, including the repeats, determines substrate specificity []. RlpA is a rare lipoprotein A protein that may be important for cell division. Its N-terminal cysteine may be attached to thioglyceride and N-fatty acyl residues [].; PDB: 1X60_A 1UTA_A.
Probab=41.47 E-value=72 Score=19.48 Aligned_cols=46 Identities=13% Similarity=0.053 Sum_probs=32.0
Q ss_pred hhHHHHHHHHHHCCcee----ccCCCCEEEEeccCcCCHHHHHHHHHHHH
Q psy6548 186 LEVYDVCIKMKDAGLVT----KPISNNIIRLSPALNITEQELREGLDIII 231 (242)
Q Consensus 186 ~~~~~~~~~l~~~gi~~----~~~~~~~lR~~~~~~~t~e~i~~~~~~l~ 231 (242)
..++.+.+.|...|.-. ...+....|+......+.++.+...+.|.
T Consensus 16 ~~A~~~~~~l~~~g~~~~~~~~~~~~~~yrV~~G~f~~~~~A~~~~~~l~ 65 (76)
T PF05036_consen 16 ENAERLLAKLKKKGPDAYVVQVSKGGPWYRVRVGPFSSREEAEAALRKLK 65 (76)
T ss_dssp HHHHHHHHHHHHHT-----EEEEEETTCEEEEECCECTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCcceEEEecCCceEEEEECCCCCHHHHHHHHHHHh
Confidence 67788888888887642 23356667777666678888888888877
No 421
>PF06153 DUF970: Protein of unknown function (DUF970); InterPro: IPR010375 This is a family of uncharacterised bacterial proteins.; PDB: 3M05_A.
Probab=41.26 E-value=34 Score=23.65 Aligned_cols=46 Identities=15% Similarity=0.338 Sum_probs=31.7
Q ss_pred hhHHHHHHHHHHCCceeccC---------CCCEEEEeccCcCCHHHHHHHHHHHHHHHH
Q psy6548 186 LEVYDVCIKMKDAGLVTKPI---------SNNIIRLSPALNITEQELREGLDIIINTIN 235 (242)
Q Consensus 186 ~~~~~~~~~l~~~gi~~~~~---------~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~ 235 (242)
.|+..+.+.|.++|+.+..- ++..+-+ ...+|++++.++.|++.-+
T Consensus 11 ~Da~~l~~~L~~~g~~~TkLsstGGFLr~GNtTlli----Gvede~v~~vl~iIk~~c~ 65 (109)
T PF06153_consen 11 EDADDLSDALNENGFRVTKLSSTGGFLREGNTTLLI----GVEDEKVDEVLEIIKENCK 65 (109)
T ss_dssp HHHHHHHHHHHHTT--EEEEEEEETTTTEEEEEEEE----EEEGGGHHHHHHHHHHHH-
T ss_pred hhHHHHHHHHHHCCceEEEEecccceeccCCEEEEE----EecHHHHHHHHHHHHHhhc
Confidence 68999999999999998632 1222333 4688899999999987543
No 422
>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.
Probab=40.85 E-value=64 Score=29.21 Aligned_cols=46 Identities=11% Similarity=0.083 Sum_probs=33.5
Q ss_pred CCEEEEEEcccccCC----Ccc----------cCCHHHHHHHHHHHHhhCCEEEEecccc
Q psy6548 20 PNICAFMVEPIQGEA----GAV----------VPDDGYLKKVRALCSQYNVLFIADEVQT 65 (242)
Q Consensus 20 ~~~~~i~~e~~~~~~----G~~----------~~~~~~l~~l~~l~~~~~~~li~De~~~ 65 (242)
=.+.+|.+.|++... |.- ..+.+.++++++-|+++|+-+|.|=+..
T Consensus 39 lG~~~i~l~Pi~~~~~~~~gY~~~d~~~id~~~Gt~~~~~~lv~~ah~~gi~vilD~v~N 98 (543)
T TIGR02403 39 LGVDYIWLNPFYVSPQKDNGYDVSDYYAINPLFGTMADFEELVSEAKKRNIKIMLDMVFN 98 (543)
T ss_pred cCCCEEEECCcccCCCCCCCCCccccCccCcccCCHHHHHHHHHHHHHCCCEEEEEECcc
Confidence 346678888875543 211 2245789999999999999999997764
No 423
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=40.85 E-value=35 Score=23.57 Aligned_cols=25 Identities=20% Similarity=0.232 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHhhCC-EEEEecccc
Q psy6548 41 DGYLKKVRALCSQYNV-LFIADEVQT 65 (242)
Q Consensus 41 ~~~l~~l~~l~~~~~~-~li~De~~~ 65 (242)
.+..+.+.+..++++. ++|+||++.
T Consensus 73 ~~l~~~~~~~l~~~~~~~lviDe~~~ 98 (131)
T PF13401_consen 73 DELRSLLIDALDRRRVVLLVIDEADH 98 (131)
T ss_dssp HHHHHHHHHHHHHCTEEEEEEETTHH
T ss_pred HHHHHHHHHHHHhcCCeEEEEeChHh
Confidence 4567788888888887 899999996
No 424
>PF07905 PucR: Purine catabolism regulatory protein-like family; InterPro: IPR012914 This domain is found in the purine catabolism regulatory protein expressed by Bacillus subtilis (PucR, O32138 from SWISSPROT). PucR is thought to be a transcriptional regulator of genes involved in the purine degradation pathway, and may contain a LysR-like DNA-binding domain. It is similar to LysR-type regulators in that it represses its own expression []. The other members of this family are also putative regulatory proteins.
Probab=39.82 E-value=44 Score=23.39 Aligned_cols=52 Identities=4% Similarity=0.103 Sum_probs=33.0
Q ss_pred ccccccCCCChhh-----hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEE
Q psy6548 2 SLQFPVKSKQVPA-----KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIA 60 (242)
Q Consensus 2 ~~~~~~~~~d~~~-----~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~ 60 (242)
|+-+.++.++.+. +.+.+.+++++++.-..... .+ -+++.+.|++++.++|.
T Consensus 48 ttg~~~~~~~~~~~~~~i~~L~~~~~agL~i~~~~~~~--~i-----P~~~i~~A~~~~lPli~ 104 (123)
T PF07905_consen 48 TTGYALRDDDEEELREFIRELAEKGAAGLGIKTGRYLD--EI-----PEEIIELADELGLPLIE 104 (123)
T ss_pred ECCcccCCCCHHHHHHHHHHHHHCCCeEEEEeccCccc--cC-----CHHHHHHHHHcCCCEEE
Confidence 3445566644442 55557788888886642222 23 35678999999998873
No 425
>cd04937 ACT_AKi-DapG-BS_2 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI. This CD includes the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive AK isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The BS AKI is tetrameric consisting of two alpha and two beta subunits; th
Probab=39.80 E-value=81 Score=18.89 Aligned_cols=46 Identities=9% Similarity=0.234 Sum_probs=32.6
Q ss_pred hHHHHHHHHHHCCceeccCCCCEEEEeccCcCCHHHHHHHHHHHHHHH
Q psy6548 187 EVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTI 234 (242)
Q Consensus 187 ~~~~~~~~l~~~gi~~~~~~~~~lR~~~~~~~t~e~i~~~~~~l~~~l 234 (242)
....+.+.|.+.||-+.-....-..++ ....+++.++++++|.+.+
T Consensus 17 i~~~if~aL~~~~I~v~~~~~Se~~is--~~v~~~~~~~av~~Lh~~f 62 (64)
T cd04937 17 VMAKIVGALSKEGIEILQTADSHTTIS--CLVSEDDVKEAVNALHEAF 62 (64)
T ss_pred HHHHHHHHHHHCCCCEEEEEcCccEEE--EEEcHHHHHHHHHHHHHHh
Confidence 466788888899888854332334454 4578888999998887765
No 426
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=39.54 E-value=60 Score=22.06 Aligned_cols=31 Identities=10% Similarity=-0.004 Sum_probs=20.8
Q ss_pred EEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEE
Q psy6548 24 AFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIA 60 (242)
Q Consensus 24 ~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~ 60 (242)
-|++|-+.. .+.+..++|.++++++|..+.+
T Consensus 88 ~v~~EKP~~------~~~~~~~~l~~~a~~~~~~~~V 118 (120)
T PF01408_consen 88 HVLVEKPLA------LTLEEAEELVEAAKEKGVKVMV 118 (120)
T ss_dssp EEEEESSSS------SSHHHHHHHHHHHHHHTSCEEE
T ss_pred EEEEEcCCc------CCHHHHHHHHHHHHHhCCEEEE
Confidence 566666533 3456688888888888877665
No 427
>PLN03244 alpha-amylase; Provisional
Probab=39.14 E-value=57 Score=30.99 Aligned_cols=32 Identities=13% Similarity=0.072 Sum_probs=26.4
Q ss_pred cCCHHHHHHHHHHHHhhCCEEEEeccccccCc
Q psy6548 38 VPDDGYLKKVRALCSQYNVLFIADEVQTGLGR 69 (242)
Q Consensus 38 ~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~ 69 (242)
..+++.++++++-|++.|+-||.|=|++-++.
T Consensus 437 YGTPeDLK~LVD~aH~~GI~VILDvV~NH~~~ 468 (872)
T PLN03244 437 YGTPDDFKRLVDEAHGLGLLVFLDIVHSYAAA 468 (872)
T ss_pred cCCHHHHHHHHHHHHHCCCEEEEEecCccCCC
Confidence 33467899999999999999999999864443
No 428
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=38.78 E-value=1.6e+02 Score=22.54 Aligned_cols=65 Identities=12% Similarity=0.065 Sum_probs=46.1
Q ss_pred ceeEEEEe-cCCc--hhHHHHHHHHHHCCceeccCCCCEEEEec--cCcCCHHHHHHHHHHHHHHHHHHh
Q psy6548 174 GLLNAIVL-DKSI--LEVYDVCIKMKDAGLVTKPISNNIIRLSP--ALNITEQELREGLDIIINTINTMA 238 (242)
Q Consensus 174 ~~~~~~~~-~~~~--~~~~~~~~~l~~~gi~~~~~~~~~lR~~~--~~~~t~e~i~~~~~~l~~~l~~~~ 238 (242)
+..+||.= +..+ -.+.++.+.|.++|+.+.--++..+|-.+ .+..+.+|=.+=+.++.++.+-+.
T Consensus 23 ~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LDGDnvR~gL~~dLgFs~edR~eniRRvaevAkll~ 92 (197)
T COG0529 23 GAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLDGDNVRHGLNRDLGFSREDRIENIRRVAEVAKLLA 92 (197)
T ss_pred CeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEecChhHhhcccCCCCCChHHHHHHHHHHHHHHHHHH
Confidence 34566553 2322 34678899999999999887788888754 567788887777777777766543
No 429
>PF12310 Elf-1_N: Transcription factor protein N terminal; InterPro: IPR022084 This domain family is found in eukaryotes, and is approximately 110 amino acids in length. The family is found in association with PF00178 from PFAM. There is a conserved PAVIVE sequence motif. Elf-1 is an immune cell specific transcription factor. It is found in T cells, B cells, megakaryocytes,and mast cells and is involved in the control of transcription for various immune proteins. These include IL-2, GM-CSF, IL-5, IL-2 receptor alpha chain, and CD4 in T cells, IgH, blk, and lyn in B cells, TdT in T and B cells, IL-3 in megakaryocytes, and SCL and Fc-epsilon-RI alpha chain in mast cells.
Probab=38.24 E-value=40 Score=23.17 Aligned_cols=49 Identities=20% Similarity=0.249 Sum_probs=31.4
Q ss_pred cccccCCCChhh-hcCC-CCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEecccccc
Q psy6548 3 LQFPVKSKQVPA-KLKS-NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGL 67 (242)
Q Consensus 3 ~~~~~~~~d~~~-~~~~-~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~ 67 (242)
.++-|.-|..+. .... ...-.+||+|++.+. ++-+-|-. |..||.++++
T Consensus 10 lvfEfasn~~e~~~q~~~ps~~PAVIVE~VP~a---------------~l~~~Ysg-Lv~dde~t~~ 60 (108)
T PF12310_consen 10 LVFEFASNGMEDEQQLGDPSVFPAVIVEQVPSA---------------DLLQGYSG-LVYDDEPTYM 60 (108)
T ss_pred cEEEEecCCceeccccCCCCCCCeEEEeecCch---------------HHhccccc-eEEeecccce
Confidence 466777788877 4444 456789999997552 24445655 6666665543
No 430
>PRK06512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=37.41 E-value=44 Score=26.29 Aligned_cols=21 Identities=5% Similarity=-0.016 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHhhCCEEEEec
Q psy6548 42 GYLKKVRALCSQYNVLFIADE 62 (242)
Q Consensus 42 ~~l~~l~~l~~~~~~~li~De 62 (242)
+..+++.++|++||+.+|+++
T Consensus 58 ~~a~~l~~l~~~~gv~liINd 78 (221)
T PRK06512 58 KQAEKLVPVIQEAGAAALIAG 78 (221)
T ss_pred HHHHHHHHHHHHhCCEEEEeC
Confidence 357889999999999998875
No 431
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=36.36 E-value=43 Score=29.68 Aligned_cols=26 Identities=15% Similarity=0.038 Sum_probs=23.6
Q ss_pred CHHHHHHHHHHHHhhCCEEEEecccc
Q psy6548 40 DDGYLKKVRALCSQYNVLFIADEVQT 65 (242)
Q Consensus 40 ~~~~l~~l~~l~~~~~~~li~De~~~ 65 (242)
+++.|++|++-|+++|+.||.|-|..
T Consensus 79 t~~dl~~Li~~~H~~Gi~vi~D~V~N 104 (479)
T PRK09441 79 TKEELLNAIDALHENGIKVYADVVLN 104 (479)
T ss_pred CHHHHHHHHHHHHHCCCEEEEEECcc
Confidence 56789999999999999999999874
No 432
>PF07085 DRTGG: DRTGG domain; InterPro: IPR010766 This presumed domain is about 120 amino acids in length. It is found associated with CBS domains IPR000644 from INTERPRO, as well as the CbiA domain IPR002586 from INTERPRO. The function of this domain is unknown. It is named the DRTGG domain after some of the most conserved residues. This domain may be very distantly related to a pair of CBS domains. There are no significant sequence similarities, but its length and association with CBS domains supports this idea. ; PDB: 3L31_B 3L2B_A 2IOJ_A.
Probab=35.40 E-value=70 Score=21.49 Aligned_cols=45 Identities=13% Similarity=0.215 Sum_probs=26.4
Q ss_pred ccCCCChhh-hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEE
Q psy6548 6 PVKSKQVPA-KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIA 60 (242)
Q Consensus 6 ~~~~~d~~~-~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~ 60 (242)
..+-+..+. ..+....++++++.+ | ..| =+++.++|++.++.++.
T Consensus 45 It~gdR~di~~~a~~~~i~~iIltg-----~-~~~----~~~v~~la~~~~i~vi~ 90 (105)
T PF07085_consen 45 ITPGDREDIQLAAIEAGIACIILTG-----G-LEP----SEEVLELAKELGIPVIS 90 (105)
T ss_dssp EEETT-HHHHHHHCCTTECEEEEET-----T---------HHHHHHHHHHT-EEEE
T ss_pred EEeCCcHHHHHHHHHhCCCEEEEeC-----C-CCC----CHHHHHHHHHCCCEEEE
Confidence 344555555 555555688888874 2 344 34566899999998885
No 433
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=35.38 E-value=44 Score=26.65 Aligned_cols=21 Identities=19% Similarity=0.352 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHhhCCEEEEec
Q psy6548 42 GYLKKVRALCSQYNVLFIADE 62 (242)
Q Consensus 42 ~~l~~l~~l~~~~~~~li~De 62 (242)
+.++++++.|+++|+.+|+|=
T Consensus 62 ~~ld~~v~~a~~~gi~vild~ 82 (281)
T PF00150_consen 62 ARLDRIVDAAQAYGIYVILDL 82 (281)
T ss_dssp HHHHHHHHHHHHTT-EEEEEE
T ss_pred HHHHHHHHHHHhCCCeEEEEe
Confidence 568899999999999999974
No 434
>cd04918 ACT_AK1-AT_2 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the second of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine (SAM). This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. In its inactive state, Arabidopsis AK1 binds the effectors lysine and SAM (two molecules each) at the interface of two ACT1 domain subunits. The second ACT domain (ACT2), this CD, does not interact with an effector. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=35.23 E-value=1e+02 Score=18.54 Aligned_cols=46 Identities=9% Similarity=0.138 Sum_probs=31.7
Q ss_pred hHHHHHHHHHHCCceec--cCCCCEEEEeccCcCCHHHHHHHHHHHHHHH
Q psy6548 187 EVYDVCIKMKDAGLVTK--PISNNIIRLSPALNITEQELREGLDIIINTI 234 (242)
Q Consensus 187 ~~~~~~~~l~~~gi~~~--~~~~~~lR~~~~~~~t~e~i~~~~~~l~~~l 234 (242)
....+.+.|.+.||-+. ..+..-..++ .....++.+++++.|.+.+
T Consensus 16 ~~~~i~~aL~~~~I~v~~i~~g~s~~sis--~~v~~~~~~~av~~Lh~~f 63 (65)
T cd04918 16 ILERAFHVLYTKGVNVQMISQGASKVNIS--LIVNDSEAEGCVQALHKSF 63 (65)
T ss_pred HHHHHHHHHHHCCCCEEEEEecCccceEE--EEEeHHHHHHHHHHHHHHH
Confidence 45678888888888773 2233434554 4468889999998887755
No 435
>PF06877 RraB: Regulator of ribonuclease activity B; InterPro: IPR009671 This entry occurs in several hypothetical bacterial proteins of around 120 residues in length. The function of these proteins is unknown. The protein structure has been determined for one member of this group, the hypothetical protein VCO424 from Vibrio cholerae; it has an alpha+beta sandwich fold.; PDB: 1NXI_A.
Probab=35.19 E-value=1.4e+02 Score=19.98 Aligned_cols=60 Identities=3% Similarity=0.114 Sum_probs=38.7
Q ss_pred EEEEecCCchhHHHHHHHHHHCCceeccC------CCC--EEEEeccCcCCHHHHHHHHHHHHHHHHHH
Q psy6548 177 NAIVLDKSILEVYDVCIKMKDAGLVTKPI------SNN--IIRLSPALNITEQELREGLDIIINTINTM 237 (242)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~l~~~gi~~~~~------~~~--~lR~~~~~~~t~e~i~~~~~~l~~~l~~~ 237 (242)
.++.++.. .+.+.++..+.+.|.-+... +.. .++++.....+.+.|......|.+..++.
T Consensus 28 h~~~f~~~-~~~~~f~~~~~~~g~~v~~~~~~~~d~~~~~~~~~~~~~~~~~~~I~~~~~~l~~lA~~~ 95 (104)
T PF06877_consen 28 HWFYFEDE-EDAEKFAEELEKLGYEVESAEEDEEDGDGPYCLDISREMVLDYEDINAITQELEDLAKEF 95 (104)
T ss_dssp EEEEES-H-HHHHHHHHHHHHHS---B----B-SS-SSBEEEEEEEEE-S-HHHHHHHHHHHHHHHHHH
T ss_pred EEEEeCCH-HHHHHHHHHHHHCCCEEEEeecccCCCCceEEEEEEEecCCCHHHHHHHHHHHHHHHHHh
Confidence 34555565 78999999999999887542 222 46666666778899999999888877764
No 436
>COG4050 Uncharacterized protein conserved in archaea [Function unknown]
Probab=34.81 E-value=1e+02 Score=21.54 Aligned_cols=32 Identities=22% Similarity=0.321 Sum_probs=26.8
Q ss_pred CEEEEeccCcCCHHHHHHHHHHHHHHHHHHhhhc
Q psy6548 208 NIIRLSPALNITEQELREGLDIIINTINTMAAKK 241 (242)
Q Consensus 208 ~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~~~~~ 241 (242)
..+++- +..++|+-..+++.+...++++..+.
T Consensus 120 PiLelk--YP~s~Eea~~~VnkI~~FL~sLe~~n 151 (152)
T COG4050 120 PILELK--YPRSEEEAIDFVNKIANFLKSLEAQN 151 (152)
T ss_pred ceEEEe--CCCcHHHHHHHHHHHHHHHHhhhhhc
Confidence 456776 66789999999999999999988765
No 437
>PRK00910 ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase; Provisional
Probab=34.54 E-value=77 Score=24.92 Aligned_cols=34 Identities=12% Similarity=0.144 Sum_probs=26.1
Q ss_pred CEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEE
Q psy6548 21 NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFI 59 (242)
Q Consensus 21 ~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li 59 (242)
...++++|-++. .|.... .+++.++|++||+.++
T Consensus 168 ~p~~vicEil~~-dG~ma~----~~~l~~fA~~h~l~~i 201 (218)
T PRK00910 168 QPAGVLCELTNP-DGTMAK----TPEIIAFGKLHNMPVL 201 (218)
T ss_pred CceEEEEEEecC-CCCcCC----HHHHHHHHHHcCCcEE
Confidence 457888888664 465444 8888999999999987
No 438
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=34.50 E-value=58 Score=29.50 Aligned_cols=29 Identities=21% Similarity=0.163 Sum_probs=24.8
Q ss_pred CHHHHHHHHHHHHhhCCEEEEeccccccC
Q psy6548 40 DDGYLKKVRALCSQYNVLFIADEVQTGLG 68 (242)
Q Consensus 40 ~~~~l~~l~~l~~~~~~~li~De~~~~~~ 68 (242)
+.+.++++++-|+++|+-||.|=++..++
T Consensus 158 ~~~e~k~lV~~aH~~Gi~VilD~V~NH~~ 186 (542)
T TIGR02402 158 GPDDLKALVDAAHGLGLGVILDVVYNHFG 186 (542)
T ss_pred CHHHHHHHHHHHHHCCCEEEEEEccCCCC
Confidence 45679999999999999999999886443
No 439
>PRK11823 DNA repair protein RadA; Provisional
Probab=34.35 E-value=48 Score=29.14 Aligned_cols=51 Identities=12% Similarity=0.070 Sum_probs=33.5
Q ss_pred CChhh--hcCCCCCEEEEEEcccccCCC--------cccCCHHHHHHHHHHHHhhCCEEEE
Q psy6548 10 KQVPA--KLKSNPNICAFMVEPIQGEAG--------AVVPDDGYLKKVRALCSQYNVLFIA 60 (242)
Q Consensus 10 ~d~~~--~~~~~~~~~~i~~e~~~~~~G--------~~~~~~~~l~~l~~l~~~~~~~li~ 60 (242)
.+++. +.+.+.++..+++++.+.... ....-.+.+.+|.++++++|+.++.
T Consensus 143 ~~l~~i~~~i~~~~~~lVVIDSIq~l~~~~~~~~~g~~~qvr~~~~~L~~~ak~~~itvil 203 (446)
T PRK11823 143 TNLEAILATIEEEKPDLVVIDSIQTMYSPELESAPGSVSQVRECAAELMRLAKQRGIAVFL 203 (446)
T ss_pred CCHHHHHHHHHhhCCCEEEEechhhhccccccCCCCCHHHHHHHHHHHHHHHHHcCCEEEE
Confidence 45555 555566888999999875432 1111234566789999999996653
No 440
>COG3286 Uncharacterized protein conserved in archaea [Function unknown]
Probab=34.22 E-value=2.2e+02 Score=21.96 Aligned_cols=51 Identities=14% Similarity=0.114 Sum_probs=39.1
Q ss_pred HHHHHHHHHHCCceecc--CCCCEEEEeccCcCCHHHHHHHHHHHHHHHHHHhhh
Q psy6548 188 VYDVCIKMKDAGLVTKP--ISNNIIRLSPALNITEQELREGLDIIINTINTMAAK 240 (242)
Q Consensus 188 ~~~~~~~l~~~gi~~~~--~~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~~~~ 240 (242)
-.+|.+++-.+++.... .+.+.+++. ...+.++|.+.+.++++....+.++
T Consensus 15 ~e~flE~lqr~~~~~~v~~~g~n~vkV~--v~G~~~eireair~irel~~~vr~r 67 (204)
T COG3286 15 KEEFLERLQRMVKDTYVEIRGKNRVKVN--VFGTKDEIREAIRAIRELHRRVRRR 67 (204)
T ss_pred HHHHHHHHHHhCcceEEEEccCceEEEE--EecchHHHHHHHHHHHHHHHHHHhh
Confidence 36699999888766542 344778887 6677999999999999998876553
No 441
>cd04923 ACT_AK-LysC-DapG-like_2 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the second and fourth, of four, ACT domains present in cyanobacteria AK. Also included are the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (B. subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=32.82 E-value=98 Score=17.89 Aligned_cols=46 Identities=15% Similarity=0.254 Sum_probs=29.6
Q ss_pred hHHHHHHHHHHCCceeccCCCCEEEEeccCcCCHHHHHHHHHHHHHHH
Q psy6548 187 EVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTI 234 (242)
Q Consensus 187 ~~~~~~~~l~~~gi~~~~~~~~~lR~~~~~~~t~e~i~~~~~~l~~~l 234 (242)
....+.+.|.+.|+-+........+++ ...+.++.+++++.|.+.+
T Consensus 16 ~~~~i~~~L~~~~i~v~~i~~s~~~is--~~v~~~~~~~~~~~l~~~l 61 (63)
T cd04923 16 VAAKMFKALAEAGINIEMISTSEIKIS--CLVDEDDAEKAVRALHEAF 61 (63)
T ss_pred HHHHHHHHHHHCCCCEEEEEccCCeEE--EEEeHHHHHHHHHHHHHHh
Confidence 355688888888877643322223333 4467788888888887755
No 442
>PRK00014 ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase; Provisional
Probab=32.44 E-value=87 Score=24.84 Aligned_cols=39 Identities=10% Similarity=0.230 Sum_probs=27.9
Q ss_pred CEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEE-Eeccc
Q psy6548 21 NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFI-ADEVQ 64 (242)
Q Consensus 21 ~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li-~De~~ 64 (242)
...++++|-++. .|.... .+++.+++++||+.+| ++|..
T Consensus 172 ~P~~vicEil~~-dG~ma~----~~~l~~fA~~~~l~iisi~dli 211 (230)
T PRK00014 172 RPAGVLCELMNA-DGTMMR----GASLERYAAKEGLVALAIDELA 211 (230)
T ss_pred CceEEEEEEeCC-CCCccC----HHHHHHHHHHcCCcEEEHHHHH
Confidence 457788887554 465444 8888999999999987 44433
No 443
>PF14258 DUF4350: Domain of unknown function (DUF4350)
Probab=32.04 E-value=1.2e+02 Score=18.46 Aligned_cols=38 Identities=11% Similarity=0.057 Sum_probs=26.3
Q ss_pred CCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEe
Q psy6548 19 NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIAD 61 (242)
Q Consensus 19 ~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~D 61 (242)
..+...++++|....+ +++.+++|.++.++-|.++|+|
T Consensus 33 ~~~~tll~i~~~~~~~-----~~~~~~~l~~~v~~G~~lvl~a 70 (70)
T PF14258_consen 33 ADDGTLLVIGPDLRLS-----EPEEAEALLEWVEAGNTLVLAA 70 (70)
T ss_pred CCCCEEEEEeCCCCCC-----chHHHHHHHHHHHcCCEEEEeC
Confidence 3556667777753321 1366899999999888888875
No 444
>PF03460 NIR_SIR_ferr: Nitrite/Sulfite reductase ferredoxin-like half domain; InterPro: IPR005117 Sulphite reductases (SiRs) and related nitrite reductases (NiRs) catalyse the six-electron reduction reactions of sulphite to sulphide, and nitrite to ammonia, respectively. The Escherichia coli SiR enzyme is a complex composed of two proteins, a flavoprotein alpha-component (SiR-FP) and a hemoprotein beta-component (SiR-HP), and has an alpha(8)beta(4) quaternary structure []. SiR-FP contains both FAD and FMN, while SiR-HP contains a Fe(4)S(4) cluster coupled to a sirohaem through a cysteine bridge. Electrons are transferred from NADPH to FAD, and on to FMN in SiR-FP, from which they are transferred to the metal centre of SiR-HP, where they reduce the siroheme-bound sulphite. SiR-HP has a two-fold symmetry, which generates a distinctive three-domain alpha/beta fold that controls assembly and reactivity []. This entry describes the ferrodoxin-like (alpha/beta sandwich) domain, which consists of a duplication containing two subdomains of this fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3B0H_A 4GEP_A 2GEP_A 2AOP_A 5AOP_A 6GEP_A 4AOP_A 1AOP_A 3AOP_A 8GEP_A ....
Probab=32.03 E-value=46 Score=20.36 Aligned_cols=23 Identities=13% Similarity=0.293 Sum_probs=17.3
Q ss_pred cCCCcccCCHHHHHHHHHHHHhhCC
Q psy6548 32 GEAGAVVPDDGYLKKVRALCSQYNV 56 (242)
Q Consensus 32 ~~~G~~~~~~~~l~~l~~l~~~~~~ 56 (242)
.++|.+ +.+.++.|++++++|+.
T Consensus 16 ~~~G~i--~~~~l~~la~ia~~yg~ 38 (69)
T PF03460_consen 16 IPGGRI--SAEQLRALAEIAEKYGD 38 (69)
T ss_dssp -GGGEE--EHHHHHHHHHHHHHHST
T ss_pred CCCEEE--CHHHHHHHHHHHHHhCC
Confidence 344644 55789999999999994
No 445
>PRK13602 putative ribosomal protein L7Ae-like; Provisional
Probab=31.83 E-value=90 Score=20.18 Aligned_cols=41 Identities=17% Similarity=0.091 Sum_probs=29.5
Q ss_pred hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEecc
Q psy6548 15 KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEV 63 (242)
Q Consensus 15 ~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~ 63 (242)
+.++.++..++++-.. .++ ...+.+..+|++++++++.-..
T Consensus 21 kai~~gkaklViiA~D-------~~~-~~~~~i~~~c~~~~Vp~~~~~s 61 (82)
T PRK13602 21 KALKRGSVKEVVVAED-------ADP-RLTEKVEALANEKGVPVSKVDS 61 (82)
T ss_pred HHHHcCCeeEEEEECC-------CCH-HHHHHHHHHHHHcCCCEEEECC
Confidence 4556788888887663 212 4688899999999999875443
No 446
>PRK11895 ilvH acetolactate synthase 3 regulatory subunit; Reviewed
Probab=31.68 E-value=2.2e+02 Score=21.21 Aligned_cols=50 Identities=14% Similarity=0.092 Sum_probs=37.3
Q ss_pred hhHHHHHHHHHHCCceec-----cCC-CCEEEEeccCcCCHHHHHHHHHHHHHHHH
Q psy6548 186 LEVYDVCIKMKDAGLVTK-----PIS-NNIIRLSPALNITEQELREGLDIIINTIN 235 (242)
Q Consensus 186 ~~~~~~~~~l~~~gi~~~-----~~~-~~~lR~~~~~~~t~e~i~~~~~~l~~~l~ 235 (242)
.....+...+.++|+-+. +.. ++..|+......+++.++++++.|.+...
T Consensus 14 GvL~rI~~lf~rrg~NI~Sl~v~~te~~~~sriti~V~~~~~~i~qi~kQl~KLid 69 (161)
T PRK11895 14 GVLSRVAGLFSRRGYNIESLTVGPTEDPGLSRMTIVTSGDEQVIEQITKQLNKLID 69 (161)
T ss_pred cHHHHHHHHHHhCCCcEEEEEeeecCCCCEEEEEEEEECCHHHHHHHHHHHhcccc
Confidence 456778888889988773 433 56777776666788889999988887654
No 447
>COG2257 Uncharacterized homolog of the cytoplasmic domain of flagellar protein FhlB [Function unknown]
Probab=31.50 E-value=31 Score=22.82 Aligned_cols=25 Identities=12% Similarity=0.064 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHhhCCEEEEeccccc
Q psy6548 42 GYLKKVRALCSQYNVLFIADEVQTG 66 (242)
Q Consensus 42 ~~l~~l~~l~~~~~~~li~De~~~~ 66 (242)
+.-++|.+.+++||+++..|....+
T Consensus 32 ~iAe~II~~Ake~~Vpi~edp~Lv~ 56 (92)
T COG2257 32 EIAEKIIEKAKEHGVPIQEDPLLVE 56 (92)
T ss_pred HHHHHHHHHHHHcCCCcccCHHHHH
Confidence 4578899999999999999987643
No 448
>smart00545 JmjN Small domain found in the jumonji family of transcription factors. To date, this domain always co-occurs with the JmjC domain (although the reverse is not true).
Probab=30.99 E-value=75 Score=17.73 Aligned_cols=20 Identities=20% Similarity=0.481 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHhhCCEEEE
Q psy6548 41 DGYLKKVRALCSQYNVLFIA 60 (242)
Q Consensus 41 ~~~l~~l~~l~~~~~~~li~ 60 (242)
-+|++.+.+.+++||+.=|+
T Consensus 16 ~~yi~~i~~~~~~yGi~KIv 35 (42)
T smart00545 16 LAYISKIRPQAEKYGICKVV 35 (42)
T ss_pred HHHHHHHHHHHhhCCEEEEE
Confidence 46889999999999987654
No 449
>cd07571 ALP_N-acyl_transferase Apolipoprotein N-acyl transferase (class 9 nitrilases). ALP N-acyl transferase (Lnt), is an essential membrane-bound enzyme in gram-negative bacteria, which catalyzes the N-acylation of apolipoproteins, the final step in lipoprotein maturation. This is a reverse amidase (i.e. condensation) reaction. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 9.
Probab=30.79 E-value=1e+02 Score=24.90 Aligned_cols=37 Identities=11% Similarity=0.087 Sum_probs=26.4
Q ss_pred EEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEE
Q psy6548 24 AFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIA 60 (242)
Q Consensus 24 ~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~ 60 (242)
-+++-|-...+|........++++.++|+++++.+|+
T Consensus 41 ~lvvfPE~~l~g~~~~~~~~~~~l~~~ak~~~i~ii~ 77 (270)
T cd07571 41 DLVVWPETALPFDLQRDPDALARLARAARAVGAPLLT 77 (270)
T ss_pred CEEEecCCcCCcccccCHHHHHHHHHHHHhcCCeEEE
Confidence 3455555555564444567899999999999998874
No 450
>PF12122 DUF3582: Protein of unknown function (DUF3582); InterPro: IPR022732 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the N-terminal domain of membrane-bound serine endopeptidases belonging to MEROPS peptidase family S54 (rhomboid-1, clan ST). This domain contains a conserved ASW sequence motif and a single completely conserved residue F that may be functionally important. The tertiary structure of the GlpG protein from Escherichia coli has been determined []. The GlpG protein has six transmembrane domains (other members of the family are predicted to have seven), with the N- and C-terminal ends anchored in the cytoplasm. One transmembrane domain is shorter than the rest, creating an internal, aqueous cavity just below the membrane surface and it is here were proteolysis occurs. There is also a membrane-embedded loop between the first and second transmembrane domains which is postulated to act as a gate controlling substrate access to the active site. No other family of serine peptidases is known to have active site residues within transmembrane domains (although transmembrane active sites are known for aspartic peptidase and metallopeptidases), and the GlpG protein has the type structure for clan ST.; GO: 0004252 serine-type endopeptidase activity, 0016021 integral to membrane; PDB: 3UBB_A 3B45_A 3B44_A 2NRF_A 3TXT_A 2O7L_A 2XTU_A 2IRV_A 2XOW_A 2XTV_A ....
Probab=30.75 E-value=1.3e+02 Score=20.50 Aligned_cols=53 Identities=9% Similarity=0.043 Sum_probs=32.9
Q ss_pred EecCCchhHHHHHHHHHHCCceeccC--CCCEEEEeccCcCCHHHHHHHHHHHHHHHHH
Q psy6548 180 VLDKSILEVYDVCIKMKDAGLVTKPI--SNNIIRLSPALNITEQELREGLDIIINTINT 236 (242)
Q Consensus 180 ~~~~~~~~~~~~~~~l~~~gi~~~~~--~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~ 236 (242)
.+..+ ..+..|.++|..+||-+... +.+.+-+- ...+++++++-..+++.+..
T Consensus 6 ~~~n~-r~AqaF~DYl~sqgI~~~i~~~~~~~~~lw---l~de~~~~~a~~el~~Fl~n 60 (101)
T PF12122_consen 6 SLNNP-RAAQAFIDYLASQGIELQIEPEGQGQFALW---LHDEEHLEQAEQELEEFLQN 60 (101)
T ss_dssp EESSH-HHHHHHHHHHHHTT--EEEE-SSSE--EEE---ES-GGGHHHHHHHHHHHHHS
T ss_pred ecCCH-HHHHHHHHHHHHCCCeEEEEECCCCceEEE---EeCHHHHHHHHHHHHHHHHC
Confidence 44455 67899999999999887643 33334444 23777788888777776653
No 451
>COG0616 SppA Periplasmic serine proteases (ClpP class) [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=30.52 E-value=37 Score=28.34 Aligned_cols=45 Identities=18% Similarity=0.313 Sum_probs=34.8
Q ss_pred CCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccc
Q psy6548 19 NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQ 64 (242)
Q Consensus 19 ~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~ 64 (242)
++++++|++ -+++|||.+..+....++|.++..+..+++++++.-
T Consensus 95 ~~~vk~vvL-~inSPGG~v~as~~i~~~l~~l~~~~PV~v~v~~~A 139 (317)
T COG0616 95 DPSVKAVVL-RINSPGGSVVASELIARALKRLRAKKPVVVSVGGYA 139 (317)
T ss_pred CCCCceEEE-EEECcCCchhHHHHHHHHHHHHhhcCCEEEEECCee
Confidence 555666554 478889999999999999999988886777777644
No 452
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=30.26 E-value=69 Score=29.98 Aligned_cols=26 Identities=15% Similarity=0.060 Sum_probs=23.1
Q ss_pred CHHHHHHHHHHHHhhCCEEEEecccc
Q psy6548 40 DDGYLKKVRALCSQYNVLFIADEVQT 65 (242)
Q Consensus 40 ~~~~l~~l~~l~~~~~~~li~De~~~ 65 (242)
+.+.++++++-|++.|+-||.|=|+.
T Consensus 243 ~~~efk~LV~~~H~~GI~VIlDvV~N 268 (688)
T TIGR02100 243 QVAEFKTMVRALHDAGIEVILDVVYN 268 (688)
T ss_pred CHHHHHHHHHHHHHCCCEEEEEECcC
Confidence 35679999999999999999999884
No 453
>cd04922 ACT_AKi-HSDH-ThrA_2 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the second of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathwa
Probab=30.23 E-value=1.2e+02 Score=17.81 Aligned_cols=47 Identities=11% Similarity=0.077 Sum_probs=30.6
Q ss_pred hhHHHHHHHHHHCCceecc--CCCCEEEEeccCcCCHHHHHHHHHHHHHHH
Q psy6548 186 LEVYDVCIKMKDAGLVTKP--ISNNIIRLSPALNITEQELREGLDIIINTI 234 (242)
Q Consensus 186 ~~~~~~~~~l~~~gi~~~~--~~~~~lR~~~~~~~t~e~i~~~~~~l~~~l 234 (242)
.....+.+.|.+.||-+-- .+....+++ +..++++.++++++|.+.+
T Consensus 16 ~~~~~i~~~l~~~~I~v~~i~~~~s~~~is--~~v~~~~~~~~~~~lh~~~ 64 (66)
T cd04922 16 GVAATFFSALAKANVNIRAIAQGSSERNIS--AVIDEDDATKALRAVHERF 64 (66)
T ss_pred cHHHHHHHHHHHCCCCEEEEEecCcccEEE--EEEeHHHHHHHHHHHHHHH
Confidence 3466788889899887721 111224444 4467788888888887654
No 454
>PRK01792 ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase; Provisional
Probab=30.04 E-value=1e+02 Score=24.23 Aligned_cols=35 Identities=6% Similarity=0.237 Sum_probs=25.8
Q ss_pred CEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEE
Q psy6548 21 NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIA 60 (242)
Q Consensus 21 ~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~ 60 (242)
...++++|-++ ..|.... .+++.+++++||+.++.
T Consensus 167 ~p~~vicEil~-~dG~ma~----~~~~~~fA~~~~l~~is 201 (214)
T PRK01792 167 KEAGVICEITN-DDGTMAR----TPEIVEFAKKFGYAVVT 201 (214)
T ss_pred CceEEEEEEec-CCCCccC----HHHHHHHHHHcCCcEEE
Confidence 45778888764 3454443 88889999999999873
No 455
>PLN02361 alpha-amylase
Probab=29.87 E-value=65 Score=27.93 Aligned_cols=47 Identities=23% Similarity=0.239 Sum_probs=33.6
Q ss_pred CCCEEEEEEcccccCC---Cc----------ccCCHHHHHHHHHHHHhhCCEEEEecccc
Q psy6548 19 NPNICAFMVEPIQGEA---GA----------VVPDDGYLKKVRALCSQYNVLFIADEVQT 65 (242)
Q Consensus 19 ~~~~~~i~~e~~~~~~---G~----------~~~~~~~l~~l~~l~~~~~~~li~De~~~ 65 (242)
+-.+-+|.+.|++... |+ ...+++.++++++-|+++|+-+|.|=|..
T Consensus 40 ~lG~t~iwl~P~~~~~~~~GY~~~d~y~~~~~~Gt~~el~~li~~~h~~gi~vi~D~V~N 99 (401)
T PLN02361 40 KSGFTSAWLPPPSQSLAPEGYLPQNLYSLNSAYGSEHLLKSLLRKMKQYNVRAMADIVIN 99 (401)
T ss_pred HcCCCEEEeCCCCcCCCCCCCCcccccccCcccCCHHHHHHHHHHHHHcCCEEEEEEccc
Confidence 4456677777764321 21 12356789999999999999999998873
No 456
>PRK00109 Holliday junction resolvase-like protein; Reviewed
Probab=29.57 E-value=87 Score=22.55 Aligned_cols=6 Identities=33% Similarity=0.423 Sum_probs=2.9
Q ss_pred EEeccc
Q psy6548 59 IADEVQ 64 (242)
Q Consensus 59 i~De~~ 64 (242)
.+||-+
T Consensus 94 ~~DEr~ 99 (138)
T PRK00109 94 LVDERL 99 (138)
T ss_pred EEcCCc
Confidence 355544
No 457
>PRK11524 putative methyltransferase; Provisional
Probab=29.49 E-value=1e+02 Score=25.09 Aligned_cols=46 Identities=7% Similarity=0.074 Sum_probs=31.2
Q ss_pred hcCCCCCEEEEEEcccccCCCccc-------------CCHHHHHHHHHHHHhhCCEEEE
Q psy6548 15 KLKSNPNICAFMVEPIQGEAGAVV-------------PDDGYLKKVRALCSQYNVLFIA 60 (242)
Q Consensus 15 ~~~~~~~~~~i~~e~~~~~~G~~~-------------~~~~~l~~l~~l~~~~~~~li~ 60 (242)
+.+.+..+-+|+++|+++.+.... +..+++.++..+.+..|.++++
T Consensus 21 ~~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~ 79 (284)
T PRK11524 21 KKIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIM 79 (284)
T ss_pred HhcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 455677899999999987532110 1135677778888888877765
No 458
>COG1105 FruK Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) [Carbohydrate transport and metabolism]
Probab=29.15 E-value=70 Score=26.65 Aligned_cols=42 Identities=12% Similarity=0.059 Sum_probs=29.2
Q ss_pred CCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccc
Q psy6548 17 KSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQ 64 (242)
Q Consensus 17 ~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~ 64 (242)
+.++++ +++.+.-+++ + +.+++.++.++|++.|+.+++|-.-
T Consensus 127 l~~~d~--VvlsGSlP~g--~--~~d~y~~li~~~~~~g~~vilD~Sg 168 (310)
T COG1105 127 LESDDI--VVLSGSLPPG--V--PPDAYAELIRILRQQGAKVILDTSG 168 (310)
T ss_pred cccCCE--EEEeCCCCCC--C--CHHHHHHHHHHHHhcCCeEEEECCh
Confidence 344455 5555533322 2 3378999999999999999999754
No 459
>PLN00196 alpha-amylase; Provisional
Probab=29.05 E-value=70 Score=28.03 Aligned_cols=47 Identities=21% Similarity=0.182 Sum_probs=34.1
Q ss_pred CCCEEEEEEcccccCC---Cc-----------ccCCHHHHHHHHHHHHhhCCEEEEecccc
Q psy6548 19 NPNICAFMVEPIQGEA---GA-----------VVPDDGYLKKVRALCSQYNVLFIADEVQT 65 (242)
Q Consensus 19 ~~~~~~i~~e~~~~~~---G~-----------~~~~~~~l~~l~~l~~~~~~~li~De~~~ 65 (242)
+-.+-+|.+.|+.... |. ..-+++.++++++-|+++|+-+|.|-|..
T Consensus 55 ~LGvtaIWL~P~~~s~s~hGY~~~D~y~ld~~~fGt~~elk~Lv~~aH~~GIkVilDvV~N 115 (428)
T PLN00196 55 AAGITHVWLPPPSHSVSEQGYMPGRLYDLDASKYGNEAQLKSLIEAFHGKGVQVIADIVIN 115 (428)
T ss_pred HcCCCEEEeCCCCCCCCCCCCCccccCCCCcccCCCHHHHHHHHHHHHHCCCEEEEEECcc
Confidence 4456677777754321 22 23456789999999999999999998874
No 460
>PF05114 DUF692: Protein of unknown function (DUF692); InterPro: IPR007801 The proteins in this entry are functionally uncharacterised.; PDB: 3BWW_A.
Probab=29.03 E-value=65 Score=26.34 Aligned_cols=32 Identities=22% Similarity=0.405 Sum_probs=19.6
Q ss_pred ccCCCcccCCHHHHHHHHHHHHhhCCEEEEec
Q psy6548 31 QGEAGAVVPDDGYLKKVRALCSQYNVLFIADE 62 (242)
Q Consensus 31 ~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De 62 (242)
.+-+|.-.++.++++++.+++++++...++|-
T Consensus 63 lslG~~~~~d~~~L~~l~~l~~~~~~~~vSeH 94 (274)
T PF05114_consen 63 LSLGSADPLDKDYLRRLKALADRLNPPWVSEH 94 (274)
T ss_dssp --TT-SS---HHHHHHHHHHHHHTT----EE-
T ss_pred cccCCCCCCCHHHHHHHHHHHHHHCCCEEEeE
Confidence 56677778899999999999999999999995
No 461
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=28.20 E-value=63 Score=25.20 Aligned_cols=48 Identities=17% Similarity=0.281 Sum_probs=30.3
Q ss_pred CCCC-CEEEEEEcccccCCCc-ccCC----------HHHHHHHHHHHHhhCCEEE-Eeccc
Q psy6548 17 KSNP-NICAFMVEPIQGEAGA-VVPD----------DGYLKKVRALCSQYNVLFI-ADEVQ 64 (242)
Q Consensus 17 ~~~~-~~~~i~~e~~~~~~G~-~~~~----------~~~l~~l~~l~~~~~~~li-~De~~ 64 (242)
+.+. ++..|+++++...-.. .... .+++..|..+|++|++.++ ..++.
T Consensus 110 l~~~~~~~liVIDSis~~~~~~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~avl~tn~~~ 170 (235)
T cd01123 110 LIESSRIKLVIVDSVTALFRAEFDGRGELAERQQHLAKLLRTLKRLADEFNVAVVITNQVT 170 (235)
T ss_pred HhhcCCeeEEEEeCcHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHhCCEEEEeccEe
Confidence 3445 8999999998653110 0101 2456778888999999765 44443
No 462
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=28.16 E-value=11 Score=31.02 Aligned_cols=43 Identities=9% Similarity=0.265 Sum_probs=35.1
Q ss_pred CCCCCEEEEEEcccccC-CCcccCCHHHHHHHHHHHHhhCCEEE
Q psy6548 17 KSNPNICAFMVEPIQGE-AGAVVPDDGYLKKVRALCSQYNVLFI 59 (242)
Q Consensus 17 ~~~~~~~~i~~e~~~~~-~G~~~~~~~~l~~l~~l~~~~~~~li 59 (242)
+..-+++.++++-+|+. .|...--.+++..|.-++.+.++.+|
T Consensus 141 lr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV 184 (302)
T PF05621_consen 141 LRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIV 184 (302)
T ss_pred HHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeE
Confidence 34567889999998884 57777788889999999999988877
No 463
>COG3589 Uncharacterized conserved protein [Function unknown]
Probab=27.83 E-value=31 Score=28.92 Aligned_cols=76 Identities=9% Similarity=0.029 Sum_probs=45.8
Q ss_pred EEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEeccccccCccCcccccccCCCCCCEEEeecccc-CCccchheeEe
Q psy6548 26 MVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALS-GGLYPISAVLA 104 (242)
Q Consensus 26 ~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~sK~~~-~g~~~~g~~~~ 104 (242)
+..+.+.+.+..-.--+.+++|.+.|++.|..+|+|=.- ..+...|+.++-+.+-+-+| .| +|+=+-..
T Consensus 33 IFtsl~~~~~~~~~~~~~~~ell~~Anklg~~vivDvnP---------sil~~l~~S~~~l~~f~e~G~~g-lRlD~gfS 102 (360)
T COG3589 33 IFTSLLIPEEDAELYFHRFKELLKEANKLGLRVIVDVNP---------SILKELNISLDNLSRFQELGVDG-LRLDYGFS 102 (360)
T ss_pred eeeecccCCchHHHHHHHHHHHHHHHHhcCcEEEEEcCH---------HHHhhcCCChHHHHHHHHhhhhh-eeecccCC
Confidence 334444444443223357899999999999999999422 23344566665555556666 56 67666555
Q ss_pred Chhhhhc
Q psy6548 105 DDEVMGT 111 (242)
Q Consensus 105 ~~~~~~~ 111 (242)
.+++.+.
T Consensus 103 ~eei~~m 109 (360)
T COG3589 103 GEEIAEM 109 (360)
T ss_pred HHHHHHH
Confidence 5444443
No 464
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=27.77 E-value=68 Score=28.34 Aligned_cols=52 Identities=13% Similarity=0.087 Sum_probs=33.3
Q ss_pred CCCChhh--hcCCCCCEEEEEEcccccCC--------CcccCCHHHHHHHHHHHHhhCCEEE
Q psy6548 8 KSKQVPA--KLKSNPNICAFMVEPIQGEA--------GAVVPDDGYLKKVRALCSQYNVLFI 59 (242)
Q Consensus 8 ~~~d~~~--~~~~~~~~~~i~~e~~~~~~--------G~~~~~~~~l~~l~~l~~~~~~~li 59 (242)
...+++. +.+.+.+...+++++.+... |....-++.+..|.++++++|+.++
T Consensus 155 ~e~~~~~I~~~i~~~~~~~vVIDSIq~l~~~~~~~~~g~~~q~r~~~~~L~~~ak~~giTvl 216 (454)
T TIGR00416 155 SETNWEQICANIEEENPQACVIDSIQTLYSPDISSAPGSVSQVRECTAELMRLAKTRGIAIF 216 (454)
T ss_pred CCCCHHHHHHHHHhcCCcEEEEecchhhcccccccCCCCHHHHHHHHHHHHHHHHHhCCEEE
Confidence 3445555 44556678899999987643 1111123456678899999998654
No 465
>PF00586 AIRS: AIR synthase related protein, N-terminal domain; InterPro: IPR000728 This family includes Hydrogen expression/formation protein, HypE, which may be involved in the maturation of NifE hydrogenase; AIR synthase and FGAM synthase, which are involved in de novo purine biosynthesis; and selenide, water dikinase, an enzyme which synthesizes selenophosphate from selenide and ATP.; GO: 0003824 catalytic activity; PDB: 3VIU_A 2Z1T_A 2Z1U_A 3C9U_B 3C9S_A 3C9R_A 1VQV_A 3C9T_B 3M84_A 3QTY_A ....
Probab=27.71 E-value=79 Score=20.78 Aligned_cols=21 Identities=10% Similarity=0.384 Sum_probs=16.2
Q ss_pred CHHHHHHHHHHHHhhCCEEEE
Q psy6548 40 DDGYLKKVRALCSQYNVLFIA 60 (242)
Q Consensus 40 ~~~~l~~l~~l~~~~~~~li~ 60 (242)
-++.++.+.+.|+++|+.++-
T Consensus 73 l~~~~~Gi~~~~~~~g~~ivG 93 (96)
T PF00586_consen 73 LKEIVKGIAEACREFGIPIVG 93 (96)
T ss_dssp HHHHHHHHHHHHHHHT-EEEE
T ss_pred HHHHHHHHHHHHHHhCCcEeC
Confidence 456778888999999998873
No 466
>COG3286 Uncharacterized protein conserved in archaea [Function unknown]
Probab=27.30 E-value=2.9e+02 Score=21.29 Aligned_cols=50 Identities=8% Similarity=-0.068 Sum_probs=37.7
Q ss_pred hHHHHHHHHHHCCceeccCCCCEEEEeccCcCCHHHHHHHHHHHHHHHHHHhhhc
Q psy6548 187 EVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINTMAAKK 241 (242)
Q Consensus 187 ~~~~~~~~l~~~gi~~~~~~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~~~~~ 241 (242)
..+-+.+.|.-.|.-+.-. ++.|.-+ .+-+++-+++..|.++..+...++
T Consensus 90 p~~vl~daLk~~GyrVevr-~~~l~T~----ap~~ev~E~vreLse~~~E~~~~~ 139 (204)
T COG3286 90 PPDVLIDALKLLGYRVEVR-GGELKTN----APWSEVVELVRELSEVYREARFQP 139 (204)
T ss_pred CHHHHHHHHHhCCceEEee-CceeecC----CCHHHHHHHHHHHHHHHHHHHhcc
Confidence 4567888998899877665 3346665 677889999999999888876554
No 467
>PF07131 DUF1382: Protein of unknown function (DUF1382); InterPro: IPR009814 This entry is represented by Bacteriophage lambda, Xis. This entry overlaps with IPR009750, both representing lambda Xis. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several hypothetical Escherichia coli and Bacteriophage lambda-like proteins of around 60 residues in length. The function of this family is unknown.
Probab=27.22 E-value=1.5e+02 Score=17.91 Aligned_cols=42 Identities=21% Similarity=0.366 Sum_probs=28.3
Q ss_pred HHHHHHHHHHCCceeccCCCCEEEEeccCcCCHHHHHHHHHHHHHHHHHHhh
Q psy6548 188 VYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINTMAA 239 (242)
Q Consensus 188 ~~~~~~~l~~~gi~~~~~~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~~~ 239 (242)
+-+++..|.+-| |||.|--..+++|...+-+.+.+-+..+..
T Consensus 12 ~lE~A~~La~~G----------IRFVpiPv~~dee~~~L~s~~~~kLe~ma~ 53 (61)
T PF07131_consen 12 ALEMAHSLAHIG----------IRFVPIPVVTDEEFHTLSSQLSQKLERMAA 53 (61)
T ss_pred HHHHHHHHHHcC----------ceeeccccccHHHHHHHHHHHHHHHHHHHH
Confidence 344555565555 566665567899988888888777766543
No 468
>PF07282 OrfB_Zn_ribbon: Putative transposase DNA-binding domain; InterPro: IPR010095 This entry represents a region of a sequence similarity between a family of putative transposases of Thermoanaerobacter tengcongensis, smaller related proteins from Bacillus anthracis, putative transposes described by IPR001959 from INTERPRO, and other proteins. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=27.20 E-value=98 Score=18.91 Aligned_cols=24 Identities=17% Similarity=0.398 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHhhCCEEE-Eecccc
Q psy6548 42 GYLKKVRALCSQYNVLFI-ADEVQT 65 (242)
Q Consensus 42 ~~l~~l~~l~~~~~~~li-~De~~~ 65 (242)
.+.+.|...|.++|+.++ +|+.++
T Consensus 3 ~~~~~L~yka~~~G~~v~~v~~~~T 27 (69)
T PF07282_consen 3 QFRQRLEYKAEEYGIQVVEVDEAYT 27 (69)
T ss_pred HHHHHHHHHHHHhCCEEEEECCCCC
Confidence 467778888999999775 888774
No 469
>PRK00745 4-oxalocrotonate tautomerase; Provisional
Probab=27.03 E-value=1.4e+02 Score=17.57 Aligned_cols=32 Identities=9% Similarity=-0.014 Sum_probs=24.7
Q ss_pred CEEEEeccCcCCHHHHHHHHHHHHHHHHHHhh
Q psy6548 208 NIIRLSPALNITEQELREGLDIIINTINTMAA 239 (242)
Q Consensus 208 ~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~~~ 239 (242)
.++++.+....|.|+-.++.+.|.+.+.+...
T Consensus 2 P~i~I~~~~grs~eqk~~l~~~it~~l~~~~~ 33 (62)
T PRK00745 2 PTFHIELFEGRTVEQKRKLVEEITRVTVETLG 33 (62)
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHHHHHHHHcC
Confidence 35777766667999999999999988877543
No 470
>PF13167 GTP-bdg_N: GTP-binding GTPase N-terminal
Probab=26.92 E-value=2e+02 Score=19.28 Aligned_cols=26 Identities=15% Similarity=0.373 Sum_probs=13.9
Q ss_pred ccCCHHHHHHHHHHHHhhCC-EEEEec
Q psy6548 37 VVPDDGYLKKVRALCSQYNV-LFIADE 62 (242)
Q Consensus 37 ~~~~~~~l~~l~~l~~~~~~-~li~De 62 (242)
...-...+++|.++++++++ ++|+|+
T Consensus 39 ~~iG~GK~eei~~~~~~~~~d~vvfd~ 65 (95)
T PF13167_consen 39 TYIGSGKVEEIKELIEELDADLVVFDN 65 (95)
T ss_pred eeechhHHHHHHHHHhhcCCCEEEECC
Confidence 34444556666666666655 334443
No 471
>cd04936 ACT_AKii-LysC-BS-like_2 ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis strain 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive AK isoenzymes. The B. subtilis strain 168 AKII is induced by methionine and repressed and inhibited by lysine. Although C. glutamicum is known to contain a single AK, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regu
Probab=26.74 E-value=1.4e+02 Score=17.25 Aligned_cols=46 Identities=17% Similarity=0.256 Sum_probs=29.0
Q ss_pred hHHHHHHHHHHCCceeccCCCCEEEEeccCcCCHHHHHHHHHHHHHHH
Q psy6548 187 EVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTI 234 (242)
Q Consensus 187 ~~~~~~~~l~~~gi~~~~~~~~~lR~~~~~~~t~e~i~~~~~~l~~~l 234 (242)
...++.+.|.+.|+-+.-....-.+++ +..++++.+++++.|.+.+
T Consensus 16 ~~~~i~~~L~~~~i~v~~i~~s~~~is--~~v~~~d~~~~~~~l~~~~ 61 (63)
T cd04936 16 VAAKMFEALAEAGINIEMISTSEIKIS--CLIDEDDAEKAVRALHEAF 61 (63)
T ss_pred HHHHHHHHHHHCCCcEEEEEccCceEE--EEEeHHHHHHHHHHHHHHh
Confidence 355678888888877643211113333 3467788888888887655
No 472
>cd01822 Lysophospholipase_L1_like Lysophospholipase L1-like subgroup of SGNH-hydrolases. The best characterized member in this family is TesA, an E. coli periplasmic protein with thioesterase, esterase, arylesterase, protease and lysophospholipase activity.
Probab=26.72 E-value=49 Score=24.22 Aligned_cols=18 Identities=17% Similarity=0.357 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHhhCCEEE
Q psy6548 42 GYLKKVRALCSQYNVLFI 59 (242)
Q Consensus 42 ~~l~~l~~l~~~~~~~li 59 (242)
.+-+.+.++|+++++.++
T Consensus 122 ~~~~~~~~~a~~~~~~~~ 139 (177)
T cd01822 122 RFAAIYPELAEEYGVPLV 139 (177)
T ss_pred HHHHHHHHHHHHcCCcEe
Confidence 444455556666665444
No 473
>PRK02289 4-oxalocrotonate tautomerase; Provisional
Probab=26.55 E-value=1.5e+02 Score=17.60 Aligned_cols=31 Identities=6% Similarity=0.116 Sum_probs=24.4
Q ss_pred EEEEeccCcCCHHHHHHHHHHHHHHHHHHhh
Q psy6548 209 IIRLSPALNITEQELREGLDIIINTINTMAA 239 (242)
Q Consensus 209 ~lR~~~~~~~t~e~i~~~~~~l~~~l~~~~~ 239 (242)
.+++...-..+.|+..++++.+-+++.+...
T Consensus 3 ~i~i~~~~Grs~EqK~~L~~~it~a~~~~~~ 33 (60)
T PRK02289 3 FVRIDLFEGRSQEQKNALAREVTEVVSRIAK 33 (60)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHHHHhC
Confidence 4666665567999999999999998887644
No 474
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=26.53 E-value=73 Score=27.15 Aligned_cols=44 Identities=14% Similarity=0.033 Sum_probs=23.6
Q ss_pred CCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEecc
Q psy6548 19 NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEV 63 (242)
Q Consensus 19 ~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~ 63 (242)
+..-.-|+.. .+.+-++.....+.+++|.++|+++|.-+++|=.
T Consensus 25 ~~Gf~~iFTS-L~ipe~~~~~~~~~~~~l~~~a~~~~~~v~~Dis 68 (357)
T PF05913_consen 25 KYGFKRIFTS-LHIPEDDPEDYLERLKELLKLAKELGMEVIADIS 68 (357)
T ss_dssp CTTEEEEEEE-E---------HHHHHHHHHHHHHHCT-EEEEEE-
T ss_pred HCCCCEEECC-CCcCCCCHHHHHHHHHHHHHHHHHCCCEEEEECC
Confidence 4443334433 3333332333346799999999999999999943
No 475
>TIGR01766 tspaseT_teng_C transposase, IS605 OrfB family, central region. This model represents a region of a sequence similarity between a family of putative transposases of Thermoanaerobacter tengcongensis, smaller related proteins from Bacillus anthracis, putative transposes described by pfam model pfam01385, and other proteins.
Probab=26.44 E-value=94 Score=19.68 Aligned_cols=24 Identities=17% Similarity=0.337 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHhhCCEEE-Eecccc
Q psy6548 42 GYLKKVRALCSQYNVLFI-ADEVQT 65 (242)
Q Consensus 42 ~~l~~l~~l~~~~~~~li-~De~~~ 65 (242)
.+.+.|...|.++|+.++ +|+.|+
T Consensus 57 ~~~~~l~yka~~~Gi~v~~v~~~yT 81 (82)
T TIGR01766 57 KLISKIKYKAEEYGIEVIEVNPAYT 81 (82)
T ss_pred HHHHHHHHHHHHcCCeEEEeCcccc
Confidence 466777788899999875 777653
No 476
>cd04917 ACT_AKiii-LysC-EC_2 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The second ACT domain (ACT2), this CD, is not involved in the binding of heterotrophic effectors. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=26.38 E-value=1.5e+02 Score=17.59 Aligned_cols=46 Identities=9% Similarity=0.049 Sum_probs=29.6
Q ss_pred hHHHHHHHHHHCCceeccCCCCEEEEeccCcCCHHHHHHHHHHHHHHH
Q psy6548 187 EVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTI 234 (242)
Q Consensus 187 ~~~~~~~~l~~~gi~~~~~~~~~lR~~~~~~~t~e~i~~~~~~l~~~l 234 (242)
....+.+.|.+.++.....+..-..++ ...+.++.+++++.|.+.+
T Consensus 17 v~~~i~~~L~~i~i~~i~~~~s~~~is--~~V~~~~~~~a~~~Lh~~f 62 (64)
T cd04917 17 VEKRIFDALEDINVRMICYGASNHNLC--FLVKEEDKDEVVQRLHSRL 62 (64)
T ss_pred HHHHHHHHHHhCCeEEEEEecCccEEE--EEEeHHHHHHHHHHHHHHH
Confidence 345677777666666544344444554 4467888999998887654
No 477
>PRK01964 4-oxalocrotonate tautomerase; Provisional
Probab=26.36 E-value=1.5e+02 Score=17.69 Aligned_cols=32 Identities=9% Similarity=0.191 Sum_probs=24.7
Q ss_pred CEEEEeccCcCCHHHHHHHHHHHHHHHHHHhh
Q psy6548 208 NIIRLSPALNITEQELREGLDIIINTINTMAA 239 (242)
Q Consensus 208 ~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~~~ 239 (242)
.++++.+.-..|.|+-.++++.|.+.+.+...
T Consensus 2 P~v~i~l~~grt~eqk~~l~~~it~~l~~~lg 33 (64)
T PRK01964 2 PIVQIQLLEGRPEEKIKNLIREVTEAISATLD 33 (64)
T ss_pred CEEEEEEeCCCCHHHHHHHHHHHHHHHHHHhC
Confidence 35777765667999999999999988876543
No 478
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=26.33 E-value=1.2e+02 Score=23.47 Aligned_cols=45 Identities=16% Similarity=0.223 Sum_probs=28.9
Q ss_pred CCCEEEEEEcccccCCCcccC-----------CHHHHHHHHHHHHhhCCEEE-Eecc
Q psy6548 19 NPNICAFMVEPIQGEAGAVVP-----------DDGYLKKVRALCSQYNVLFI-ADEV 63 (242)
Q Consensus 19 ~~~~~~i~~e~~~~~~G~~~~-----------~~~~l~~l~~l~~~~~~~li-~De~ 63 (242)
+.++.+|++++....-..... -.+.+..|..+|+++++.++ ..++
T Consensus 112 ~~~~~lvVIDsis~l~~~~~~~~~~~~~~~~~l~~~~~~L~~~a~~~~~~vi~tnq~ 168 (226)
T cd01393 112 SGRVDLVVVDSVAALFRKEFIGRGMLAERARLLSQALRKLLRLADKFNVAVVFTNQV 168 (226)
T ss_pred cCCeeEEEEcCcchhhhhhhcCCchHHHHHHHHHHHHHHHHHHHHHhCcEEEEEEEE
Confidence 568999999997543211101 12345678999999999876 4433
No 479
>PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2.5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D ....
Probab=26.29 E-value=77 Score=23.79 Aligned_cols=21 Identities=24% Similarity=0.654 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHhhCCEEEEec
Q psy6548 42 GYLKKVRALCSQYNVLFIADE 62 (242)
Q Consensus 42 ~~l~~l~~l~~~~~~~li~De 62 (242)
+..+++.++|+++++.+++++
T Consensus 43 ~~a~~l~~~~~~~~~~liin~ 63 (180)
T PF02581_consen 43 ELARRLAELCQKYGVPLIIND 63 (180)
T ss_dssp HHHHHHHHHHHHTTGCEEEES
T ss_pred HHHHHHHHHhhcceEEEEecC
Confidence 568889999999998887765
No 480
>PRK10907 intramembrane serine protease GlpG; Provisional
Probab=25.98 E-value=1.8e+02 Score=23.86 Aligned_cols=53 Identities=8% Similarity=-0.014 Sum_probs=34.6
Q ss_pred EecCCchhHHHHHHHHHHCCceeccCCCCEEEEeccCcCCHHHHHHHHHHHHHHHHH
Q psy6548 180 VLDKSILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINT 236 (242)
Q Consensus 180 ~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~ 236 (242)
.++.+ ++++.|.++|..+||-.....++...+- ..++++.+++-+.+++.+++
T Consensus 6 ~~~~~-~~a~~f~dyl~~~~i~~~~~~~~~~~lw---l~d~~~~~~~~~~~~~f~~~ 58 (276)
T PRK10907 6 SFSNP-RLAQAFVDYMATQGVILTIQQHNQSDIW---LADESQAERVRAELARFLEN 58 (276)
T ss_pred cCCCH-HHHHHHHHHHHHCCCcEEEecCCceEEE---ecCHHHHHHHHHHHHHHHhC
Confidence 34455 7889999999999988854333333343 12667777777777666543
No 481
>cd01821 Rhamnogalacturan_acetylesterase_like Rhamnogalacturan_acetylesterase_like subgroup of SGNH-hydrolases. Rhamnogalacturan acetylesterase removes acetyl esters from rhamnogalacturonan substrates, and renders them susceptible to degradation by rhamnogalacturonases. Rhamnogalacturonans are highly branched regions in pectic polysaccharides, consisting of repeating -(1,2)-L-Rha-(1,4)-D-GalUA disaccharide units, with many rhamnose residues substituted by neutral oligosaccharides such as arabinans, galactans and arabinogalactans. Extracellular enzymes participating in the degradation of plant cell wall polymers, such as Rhamnogalacturonan acetylesterase, would typically be found in saprophytic and plant pathogenic fungi and bacteria.
Probab=25.97 E-value=98 Score=23.31 Aligned_cols=41 Identities=20% Similarity=0.307 Sum_probs=26.2
Q ss_pred CCCEEEEEEcccccCC---C--cccCCHHHHHHHHHHHHhhCCEEE
Q psy6548 19 NPNICAFMVEPIQGEA---G--AVVPDDGYLKKVRALCSQYNVLFI 59 (242)
Q Consensus 19 ~~~~~~i~~e~~~~~~---G--~~~~~~~~l~~l~~l~~~~~~~li 59 (242)
+.....|++.|+.... + ......++-+.+.++|+++|+.++
T Consensus 105 ~~~~~~il~tp~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~v 150 (198)
T cd01821 105 AKGATPILVTPVTRRTFDEGGKVEDTLGDYPAAMRELAAEEGVPLI 150 (198)
T ss_pred HCCCeEEEECCccccccCCCCcccccchhHHHHHHHHHHHhCCCEE
Confidence 4456677777753211 1 112345678899999999998775
No 482
>PF13991 BssS: BssS protein family
Probab=25.91 E-value=1.1e+02 Score=19.45 Aligned_cols=26 Identities=15% Similarity=0.242 Sum_probs=22.0
Q ss_pred cCcCCHHHHHHHHHHHHHHHHHHhhh
Q psy6548 215 ALNITEQELREGLDIIINTINTMAAK 240 (242)
Q Consensus 215 ~~~~t~e~i~~~~~~l~~~l~~~~~~ 240 (242)
++..|.|+...++..|.+.+..+..+
T Consensus 39 ~~~lT~e~Ar~Li~~L~~~I~kiE~s 64 (73)
T PF13991_consen 39 TYWLTTEMARQLISILEAGIDKIESS 64 (73)
T ss_pred eeEecHHHHHHHHHHHHHHHHHHHhC
Confidence 35789999999999999999887653
No 483
>PRK09314 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional
Probab=25.78 E-value=1.2e+02 Score=25.58 Aligned_cols=34 Identities=18% Similarity=0.307 Sum_probs=25.9
Q ss_pred CEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEE
Q psy6548 21 NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFI 59 (242)
Q Consensus 21 ~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li 59 (242)
.++++++|-++ ..|.... ++++.+++++||+.++
T Consensus 156 ~p~~vicEil~-~dG~ma~----~~~l~~fA~~h~l~~i 189 (339)
T PRK09314 156 KPVAVICEIMK-EDGTMAR----RDDLEDFAKKHNLKMI 189 (339)
T ss_pred CceEEEEEEec-CCCCccc----HHHHHHHHHHcCCcEE
Confidence 46888888764 4565444 7888899999999987
No 484
>PRK12313 glycogen branching enzyme; Provisional
Probab=25.46 E-value=83 Score=29.09 Aligned_cols=30 Identities=13% Similarity=-0.058 Sum_probs=25.1
Q ss_pred cCCHHHHHHHHHHHHhhCCEEEEecccccc
Q psy6548 38 VPDDGYLKKVRALCSQYNVLFIADEVQTGL 67 (242)
Q Consensus 38 ~~~~~~l~~l~~l~~~~~~~li~De~~~~~ 67 (242)
.-+.+.++++++-|+++|+-||.|=|+.-+
T Consensus 216 ~Gt~~d~k~lv~~~H~~Gi~VilD~V~nH~ 245 (633)
T PRK12313 216 YGTPEDFMYLVDALHQNGIGVILDWVPGHF 245 (633)
T ss_pred CCCHHHHHHHHHHHHHCCCEEEEEECCCCC
Confidence 345678999999999999999999887533
No 485
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=24.86 E-value=1.2e+02 Score=18.23 Aligned_cols=11 Identities=0% Similarity=-0.010 Sum_probs=4.7
Q ss_pred HHHHHHHHHhh
Q psy6548 44 LKKVRALCSQY 54 (242)
Q Consensus 44 l~~l~~l~~~~ 54 (242)
.+++.+.|++.
T Consensus 17 ~~~~~~~a~~~ 27 (67)
T smart00481 17 PEELVKRAKEL 27 (67)
T ss_pred HHHHHHHHHHc
Confidence 33444444443
No 486
>TIGR00119 acolac_sm acetolactate synthase, small subunit. acetohydroxyacid synthase is a synonym.
Probab=24.83 E-value=2.9e+02 Score=20.44 Aligned_cols=50 Identities=10% Similarity=0.105 Sum_probs=35.6
Q ss_pred hhHHHHHHHHHHCCceec-----cCC-CCEEEEeccCcCCHHHHHHHHHHHHHHHH
Q psy6548 186 LEVYDVCIKMKDAGLVTK-----PIS-NNIIRLSPALNITEQELREGLDIIINTIN 235 (242)
Q Consensus 186 ~~~~~~~~~l~~~gi~~~-----~~~-~~~lR~~~~~~~t~e~i~~~~~~l~~~l~ 235 (242)
.....+...+.++|+-+. +.. ++..|+......+++.++.+.+.|.+...
T Consensus 13 GvL~rI~~lf~rrg~NI~Sl~v~~t~~~~~sriti~V~~d~~~i~qi~kQl~Kli~ 68 (157)
T TIGR00119 13 GVLSRVAGLFTRRGFNIESLTVGPTEDPDLSRMTIVVVGDDKVLEQITKQLNKLVD 68 (157)
T ss_pred cHHHHHHHHHHhCCceEEEEEEeecCCCCEEEEEEEEECCHHHHHHHHHHHhcCcc
Confidence 456778888889988773 333 56777776665577788888888776543
No 487
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=24.73 E-value=1.1e+02 Score=24.90 Aligned_cols=16 Identities=13% Similarity=-0.037 Sum_probs=8.7
Q ss_pred hcCCCCCEEEEEEccc
Q psy6548 15 KLKSNPNICAFMVEPI 30 (242)
Q Consensus 15 ~~~~~~~~~~i~~e~~ 30 (242)
+.++++.+..|++-++
T Consensus 138 ~~~~~~gi~~I~lv~P 153 (263)
T CHL00200 138 SVCNLYNIELILLIAP 153 (263)
T ss_pred HHHHHcCCCEEEEECC
Confidence 4455556665555544
No 488
>COG4422 Bacteriophage protein gp37 [Function unknown]
Probab=24.34 E-value=1.6e+02 Score=22.57 Aligned_cols=25 Identities=12% Similarity=0.343 Sum_probs=20.6
Q ss_pred ccCCHHHHHHHHHHHHhhCCEEEEe
Q psy6548 37 VVPDDGYLKKVRALCSQYNVLFIAD 61 (242)
Q Consensus 37 ~~~~~~~l~~l~~l~~~~~~~li~D 61 (242)
..-+++++.+|.+.|+++++.+++-
T Consensus 198 R~idp~WvdeI~~~C~~~~~aFFFK 222 (250)
T COG4422 198 RPIDPQWVDEIEDMCRDAGTAFFFK 222 (250)
T ss_pred CCCCHHHHHHHHHHHHhcCccchhH
Confidence 5667899999999999999766543
No 489
>PF04002 RadC: RadC-like JAB domain; InterPro: IPR001405 This family was named initially with reference to the Escherichia coli radC102 mutation which suggested that RadC was involved in repair of DNA lesions []. However the relevant mutation has subsequently been shown to be in recG, not radC []. In addition all attempts to characterise a radiation-related function for RadC in Streptococcus pneumoniae failed, suggesting that it is not involved in repair of DNA lesions, in recombination during transformation, in gene conversion, nor in mismatch repair [].; PDB: 2QLC_A.
Probab=24.20 E-value=1.4e+02 Score=20.92 Aligned_cols=27 Identities=11% Similarity=0.308 Sum_probs=15.5
Q ss_pred cCCCcccCCHHHH---HHHHHHHHhhCCEE
Q psy6548 32 GEAGAVVPDDGYL---KKVRALCSQYNVLF 58 (242)
Q Consensus 32 ~~~G~~~~~~~~l---~~l~~l~~~~~~~l 58 (242)
.|+|...|+++.. ++|.+.|+.-|+-+
T Consensus 74 HPsG~~~PS~~D~~~T~~L~~~~~~l~I~l 103 (123)
T PF04002_consen 74 HPSGDPEPSDADIALTRRLKKAARLLGIEL 103 (123)
T ss_dssp -TTS--S--HHHHHHHHHHHHHHHHHT-EE
T ss_pred cCCCCCCCCHhHHHHHHHHHHHHHHcCCee
Confidence 3457788888888 77788887777654
No 490
>PRK09319 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II/unknown domain fusion protein; Provisional
Probab=24.11 E-value=1.3e+02 Score=27.35 Aligned_cols=35 Identities=17% Similarity=0.276 Sum_probs=25.9
Q ss_pred CEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEE
Q psy6548 21 NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIA 60 (242)
Q Consensus 21 ~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~ 60 (242)
.++++++|- .+..|.... ++++.++|++||+.+|.
T Consensus 161 ~PaaVicEi-~~~dG~mar----~~~l~~fA~~h~L~iis 195 (555)
T PRK09319 161 YPAGVICEI-QNPDGSMAR----LPELKEYAKQHGLKLIS 195 (555)
T ss_pred CceEEEEEE-ecCCCCccC----HHHHHHHHHHcCCcEEE
Confidence 357777774 455565554 78888999999999874
No 491
>cd00532 MGS-like MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase, which catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The family also includes the C-terminal domain in carbamoyl phosphate synthetase (CPS) where it catalyzes the last phosphorylation of a coaboxyphosphate intermediate to form the product carbamoyl phosphate and may also play a regulatory role. This family also includes inosine monophosphate cyclohydrolase. The known structures in this family show a common phosphate binding site.
Probab=24.09 E-value=2.4e+02 Score=19.19 Aligned_cols=45 Identities=7% Similarity=-0.072 Sum_probs=31.3
Q ss_pred hcCCC-CCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEec
Q psy6548 15 KLKSN-PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADE 62 (242)
Q Consensus 15 ~~~~~-~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De 62 (242)
..+.+ +++-+|+..|..... .+....-..|+..|.+|+++++.+-
T Consensus 61 ~~i~~~g~idlVIn~~~~~~~---~~~~~dg~~iRR~A~~~~Ip~~T~~ 106 (112)
T cd00532 61 AAIAEKGKFDVVINLRDPRRD---RCTDEDGTALLRLARLYKIPVTTPN 106 (112)
T ss_pred HHHhCCCCEEEEEEcCCCCcc---cccCCChHHHHHHHHHcCCCEEECH
Confidence 66778 899999887742211 1112336688999999999999763
No 492
>PF07505 Gp37_Gp68: Phage protein Gp37/Gp68; InterPro: IPR011101 This entry is represented by Burkholderia phage phiE125, Gp37. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=23.83 E-value=1.5e+02 Score=24.11 Aligned_cols=39 Identities=23% Similarity=0.339 Sum_probs=28.0
Q ss_pred EEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEe
Q psy6548 22 ICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIAD 61 (242)
Q Consensus 22 ~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~D 61 (242)
+--||+-+-.++ +.++...++.+.|++.|.++|+.+.+=
T Consensus 189 IdWVIvGGESG~-~ARp~~~~Wvr~irdqC~~~gvpFffK 227 (261)
T PF07505_consen 189 IDWVIVGGESGP-GARPMHPDWVRSIRDQCAAAGVPFFFK 227 (261)
T ss_pred CCEEEECCCcCC-CCCcCCHHHHHHHHHHHHHcCCcEEEE
Confidence 334444443333 346778899999999999999988865
No 493
>KOG2781|consensus
Probab=23.77 E-value=1.9e+02 Score=23.21 Aligned_cols=36 Identities=17% Similarity=0.185 Sum_probs=22.5
Q ss_pred EEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCC--EEEEec
Q psy6548 22 ICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNV--LFIADE 62 (242)
Q Consensus 22 ~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~--~li~De 62 (242)
.++++=+...-+-|... +.++++.|+++|+ ++|+-|
T Consensus 104 lkLvfPNaqr~nRG~~~-----~~~lv~a~ra~~~Td~iivHE 141 (290)
T KOG2781|consen 104 LKLVFPNAQRLNRGNYV-----VGELVDAARANGVTDLIIVHE 141 (290)
T ss_pred heEeccChhhhccccee-----HHHHHHHHHHCCCceEEEEec
Confidence 34444444444455444 7889999999987 455554
No 494
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=23.59 E-value=1.1e+02 Score=28.13 Aligned_cols=29 Identities=17% Similarity=0.083 Sum_probs=24.5
Q ss_pred CCHHHHHHHHHHHHhhCCEEEEecccccc
Q psy6548 39 PDDGYLKKVRALCSQYNVLFIADEVQTGL 67 (242)
Q Consensus 39 ~~~~~l~~l~~l~~~~~~~li~De~~~~~ 67 (242)
.+.+.++++++.|+++|+-||.|=|+.-+
T Consensus 203 Gt~~dlk~lV~~~H~~Gi~VilD~V~NH~ 231 (613)
T TIGR01515 203 GTPDDFMYFVDACHQAGIGVILDWVPGHF 231 (613)
T ss_pred CCHHHHHHHHHHHHHCCCEEEEEecccCc
Confidence 34568999999999999999999887533
No 495
>COG2159 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]
Probab=23.57 E-value=1.5e+02 Score=24.37 Aligned_cols=46 Identities=17% Similarity=0.258 Sum_probs=34.9
Q ss_pred cCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEecccccc
Q psy6548 16 LKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGL 67 (242)
Q Consensus 16 ~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~ 67 (242)
...+.....+.+.|.... ..+.+..+..+.+.|.++|+++++ |+|.
T Consensus 121 ~v~~~gf~g~~l~p~~~~---~~~~~~~~~pi~~~a~~~gvpv~i---htG~ 166 (293)
T COG2159 121 RVRELGFVGVKLHPVAQG---FYPDDPRLYPIYEAAEELGVPVVI---HTGA 166 (293)
T ss_pred HHHhcCceEEEecccccC---CCCCChHHHHHHHHHHHcCCCEEE---EeCC
Confidence 344667888888886553 455666789999999999999988 6553
No 496
>TIGR01712 phage_N6A_met phage N-6-adenine-methyltransferase. This is a model for a phage-borne DNA N-6-adenine-methyltransferase.
Probab=23.51 E-value=1.7e+02 Score=21.99 Aligned_cols=28 Identities=14% Similarity=0.178 Sum_probs=21.9
Q ss_pred EEEEcccccCCCcccCCHHHHHHHHHHHHhhCCE
Q psy6548 24 AFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVL 57 (242)
Q Consensus 24 ~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~ 57 (242)
.|+++|++|.- ..++++.++-+++.|..
T Consensus 64 ~vf~NPPYS~~------~~~v~kaae~~~~~g~~ 91 (166)
T TIGR01712 64 AVWLNPPYSRP------DIFVNKTAWFTEARQAA 91 (166)
T ss_pred eEEecCCCCcH------HHHHHHHHHHHHhhCCe
Confidence 79999999863 46899988877777643
No 497
>PRK10933 trehalose-6-phosphate hydrolase; Provisional
Probab=23.49 E-value=95 Score=28.20 Aligned_cols=48 Identities=15% Similarity=0.084 Sum_probs=34.8
Q ss_pred CCCCEEEEEEcccccCC----Ccc----------cCCHHHHHHHHHHHHhhCCEEEEecccc
Q psy6548 18 SNPNICAFMVEPIQGEA----GAV----------VPDDGYLKKVRALCSQYNVLFIADEVQT 65 (242)
Q Consensus 18 ~~~~~~~i~~e~~~~~~----G~~----------~~~~~~l~~l~~l~~~~~~~li~De~~~ 65 (242)
++=.+-+|.+.|++... |.- ..+.+.++++++.|+++|+-||.|=+..
T Consensus 43 ~~lGv~~i~l~P~~~~~~~~~gY~~~d~~~id~~~Gt~~d~~~lv~~~h~~gi~vilD~V~N 104 (551)
T PRK10933 43 QKLGVDAIWLTPFYVSPQVDNGYDVANYTAIDPTYGTLDDFDELVAQAKSRGIRIILDMVFN 104 (551)
T ss_pred HhCCCCEEEECCCCCCCCCCCCCCcccCCCcCcccCCHHHHHHHHHHHHHCCCEEEEEECCC
Confidence 34456788888875322 221 2245679999999999999999998874
No 498
>TIGR03677 rpl7ae 50S ribosomal protein L7Ae. Multifunctional RNA-binding protein that recognizes the K-turn motif in ribosomal RNA, box H/ACA, box C/D and box C'/D' sRNAs. Interacts with protein L15e.
Probab=23.45 E-value=95 Score=21.65 Aligned_cols=42 Identities=10% Similarity=0.092 Sum_probs=27.4
Q ss_pred hcCCCCCEEEEEEcccccCCCcccCCHHHHHHHHHHHHhhCCEEEEecc
Q psy6548 15 KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEV 63 (242)
Q Consensus 15 ~~~~~~~~~~i~~e~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De~ 63 (242)
+.++.++..+|++-.--+ +.+..+.+..+|++++++++.-..
T Consensus 36 kaikkgka~LVilA~D~s-------~~~~~~~i~~lc~~~~Ip~~~~~s 77 (117)
T TIGR03677 36 KAVERGIAKLVVIAEDVE-------PPEIVAHLPALCEEKGIPYVYVKK 77 (117)
T ss_pred HHHHcCCccEEEEeCCCC-------cHHHHHHHHHHHHHcCCCEEEeCC
Confidence 444567777777766321 223467888999999998765443
No 499
>cd02742 GH20_hexosaminidase Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. These enzymes are broadly distributed in microorganisms, plants and animals, and play roles in various key physiological and pathological processes. These processes include cell structural integrity, energy storage, cellular signaling, fertilization, pathogen defense, viral penetration, the development of carcinomas, inflammatory events and lysosomal storage disorders. The GH20 enzymes include the eukaryotic beta-N-acetylhexosaminidases A and B, the bacterial chitobiases, dispersin B, and lacto-N-biosidase. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by the solvent or the enzyme, but by the substrate itself.
Probab=23.31 E-value=1.1e+02 Score=25.28 Aligned_cols=24 Identities=13% Similarity=0.041 Sum_probs=21.4
Q ss_pred ccCCHHHHHHHHHHHHhhCCEEEE
Q psy6548 37 VVPDDGYLKKVRALCSQYNVLFIA 60 (242)
Q Consensus 37 ~~~~~~~l~~l~~l~~~~~~~li~ 60 (242)
-..+.+.+++|++.|+++|+-||-
T Consensus 67 ~~yT~~di~elv~yA~~rgI~viP 90 (303)
T cd02742 67 GFYTYAQLKDIIEYAAARGIEVIP 90 (303)
T ss_pred CeECHHHHHHHHHHHHHcCCEEEE
Confidence 377889999999999999998884
No 500
>PF02082 Rrf2: Transcriptional regulator; InterPro: IPR000944 The following uncharacterised bacterial proteins have been shown to be evolutionary related, Desulfovibrio vulgaris protein Rrf2; Escherichia coli hypothetical proteins yfhP and yjeB; Bacillus subtilis hypothetical proteins yhdE, yrzC and ywgB; Mycobacterium tuberculosis hypothetical protein Rv1287; and Synechocystis sp. (strain PCC 6803) hypothetical protein slr0846. These are small proteins of 12 to 18kDa which seem to contain a signal sequence, and may represent a family of probable transcriptional regulators.; PDB: 3T8T_A 3T8R_A 3K69_A 3LWF_C 1XD7_A 2Y75_E 1YLF_C.
Probab=23.03 E-value=2.1e+02 Score=18.18 Aligned_cols=40 Identities=25% Similarity=0.310 Sum_probs=26.5
Q ss_pred hhHHHHHHHHHHCCceeccCC-CCEEEEe-ccCcCCHHHHHH
Q psy6548 186 LEVYDVCIKMKDAGLVTKPIS-NNIIRLS-PALNITEQELRE 225 (242)
Q Consensus 186 ~~~~~~~~~l~~~gi~~~~~~-~~~lR~~-~~~~~t~e~i~~ 225 (242)
.....+.+.|.+.|++-+..| ++.++++ ++-..+..||-+
T Consensus 40 ~~l~kil~~L~~~Gli~s~~G~~GGy~L~~~~~~Itl~dI~~ 81 (83)
T PF02082_consen 40 SYLRKILQKLKKAGLIESSRGRGGGYRLARPPEEITLLDIVR 81 (83)
T ss_dssp HHHHHHHHHHHHTTSEEEETSTTSEEEESS-CCGSBHHHHHH
T ss_pred HHHHHHHHHHhhCCeeEecCCCCCceeecCCHHHCCHHHHHH
Confidence 356778899999999876544 5788886 344445555443
Done!