RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy6548
(242 letters)
>gnl|CDD|130940 TIGR01885, Orn_aminotrans, ornithine aminotransferase. This model
describes the final step in the biosynthesis of
ornithine from glutamate via the non-acetylated pathway.
Ornithine amino transferase takes L-glutamate
5-semialdehyde and makes it into ornithine, which is
used in the urea cycle, as well as in the biosynthesis
of arginine. This model includes low-GC bacteria and
eukaryotic species. The genes from two species are
annotated as putative acetylornithine aminotransferases
- one from Porphyromonas gingivalis (OMNI|PG1271), and
the other from Staphylococcus aureus (OMNI|SA0170).
After homology searching using BLAST it was determined
that these two sequences were most closely related to
ornithine aminotransferases. This model's seed includes
one characterized hit, from Bacillus subtilis
(SP|P38021).
Length = 401
Score = 367 bits (943), Expect = e-128
Identities = 141/218 (64%), Positives = 180/218 (82%), Gaps = 3/218 (1%)
Query: 20 PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYE 79
PN+CAF+VEPIQGEAG VVPDDGYLKKVR LC+++NVL IADE+QTGLGRTGKLL + +E
Sbjct: 185 PNVCAFIVEPIQGEAGVVVPDDGYLKKVRELCTKHNVLLIADEIQTGLGRTGKLLCVDHE 244
Query: 80 DVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVIL 139
+V+PDIV+LGKALSGG+YP+SAVLADD+VM T+ PG HGSTYGGNPLAC +A+ AL+V+
Sbjct: 245 NVKPDIVLLGKALSGGVYPVSAVLADDDVMLTIKPGEHGSTYGGNPLACAVAVAALEVLE 304
Query: 140 EENMIENAYKMGEIFRSELRSRLSPDIVPVVRGKGLLNAIVLDKSIL--EVYDVCIKMKD 197
EE + ENA K+GEIFR +L+ +L I+ VRG+GLLNAIV+D+S +D+C+K+K+
Sbjct: 305 EEKLAENAEKLGEIFRDQLK-KLPKPIITEVRGRGLLNAIVIDESKTGRTAWDLCLKLKE 363
Query: 198 AGLVTKPISNNIIRLSPALNITEQELREGLDIIINTIN 235
GL+ KP NIIRL+P L ITE++L EGL+II I+
Sbjct: 364 KGLLAKPTHGNIIRLAPPLVITEEQLDEGLEIIKKVID 401
>gnl|CDD|240281 PTZ00125, PTZ00125, ornithine aminotransferase-like protein;
Provisional.
Length = 400
Score = 342 bits (878), Expect = e-118
Identities = 134/229 (58%), Positives = 174/229 (75%), Gaps = 2/229 (0%)
Query: 15 KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLL 74
KL +PN+ AF+VEPIQGEAG +VPDDGYLK+V LC +YNVL I DE+QTGLGRTGKLL
Sbjct: 172 KLLQDPNVAAFIVEPIQGEAGVIVPDDGYLKQVYELCKKYNVLLIVDEIQTGLGRTGKLL 231
Query: 75 AIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTA 134
A +E V+PDIV+LGKALSGGLYPISAVLA+D+VM + PG HGSTYGGNPLAC +A+ A
Sbjct: 232 AHDHEGVKPDIVLLGKALSGGLYPISAVLANDDVMLVIKPGEHGSTYGGNPLACAVAVEA 291
Query: 135 LDVILEENMIENAYKMGEIFRSELRSRL-SPDIVPVVRGKGLLNAIVLDKS-ILEVYDVC 192
L+V+ EE + ENA ++GE+FR L+ L V +RGKGLLNAIV D S + +D+C
Sbjct: 292 LEVLKEEKLAENAQRLGEVFRDGLKELLKKSPWVKEIRGKGLLNAIVFDHSDGVNAWDLC 351
Query: 193 IKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINTMAAKK 241
+K+K+ GL+ KP +NIIR +P L IT+++L + L+II + + + K
Sbjct: 352 LKLKENGLLAKPTHDNIIRFAPPLVITKEQLDQALEIIKKVLKSFDSNK 400
>gnl|CDD|215335 PLN02624, PLN02624, ornithine-delta-aminotransferase.
Length = 474
Score = 331 bits (850), Expect = e-113
Identities = 121/238 (50%), Positives = 167/238 (70%), Gaps = 10/238 (4%)
Query: 14 AKLKSN-PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGK 72
+ + I AF+ EPIQGEAG V+P DGYLK VR LCS++NVL IADE+QTGL RTGK
Sbjct: 216 KIFEEDGDRIAAFLFEPIQGEAGVVIPPDGYLKAVRELCSKHNVLMIADEIQTGLARTGK 275
Query: 73 LLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAM 132
+LA +E+VRPD+VILGKAL GG+ P+SAVLAD +VM + PG HGST+GGNPLA +AM
Sbjct: 276 MLACDWEEVRPDVVILGKALGGGVIPVSAVLADKDVMLCIKPGEHGSTFGGNPLASAVAM 335
Query: 133 TALDVILEENMIENAYKMGEIFRSELRS--RLSPDIVPVVRGKGLLNAIVLDKSIL---E 187
AL V+ +E + E + K+G+ R +L+ + P ++ VRG+GLLNA+VL+ L
Sbjct: 336 AALQVVQDEKLAERSAKLGQELRDQLQKIQKQFPKLIKEVRGRGLLNAVVLNSPKLGPVS 395
Query: 188 VYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGL----DIIINTINTMAAKK 241
YDVC+K+K+ GL+ KP + IIRL+P L+I+E EL+E D++ + + + + K
Sbjct: 396 AYDVCLKLKERGLLAKPTHDTIIRLAPPLSISEDELQECSKALSDVLEHDLPKLQSAK 453
>gnl|CDD|227325 COG4992, ArgD, Ornithine/acetylornithine aminotransferase [Amino
acid transport and metabolism].
Length = 404
Score = 282 bits (725), Expect = 9e-95
Identities = 95/224 (42%), Positives = 134/224 (59%), Gaps = 3/224 (1%)
Query: 19 NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHY 78
+ + A +VEPIQGE G + +LK +R LC ++ L I DEVQTGLGRTGKL A +
Sbjct: 182 DEDTAAVIVEPIQGEGGVIPAPPEFLKALRELCDEHGALLILDEVQTGLGRTGKLFAYEH 241
Query: 79 EDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVI 138
V PDI+ L KAL GG +PI A+LA +E+ PG HGST+GGNPLAC +A+ L+V+
Sbjct: 242 YGVEPDILTLAKALGGG-FPIGAMLATEEIASAFTPGDHGSTFGGNPLACAVALAVLEVL 300
Query: 139 LEENMIENAYKMGEIFRSELRSRLSP-DIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKD 197
LEE ++EN + GE LR +V VRG+GL+ I L + D+ +++
Sbjct: 301 LEEGLLENVREKGEYLLQRLRELKRRYPLVKEVRGRGLMIGIELKEPY-RARDIVRALRE 359
Query: 198 AGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINTMAAKK 241
G++ P N+IR P L ITE+E+ E LD + + +A+
Sbjct: 360 EGVLVLPAGPNVIRFLPPLVITEEEIDEALDALERALAAASARV 403
>gnl|CDD|99735 cd00610, OAT_like, Acetyl ornithine aminotransferase family. This
family belongs to pyridoxal phosphate (PLP)-dependent
aspartate aminotransferase superfamily (fold I). The
major groups in this CD correspond to ornithine
aminotransferase, acetylornithine aminotransferase,
alanine-glyoxylate aminotransferase, dialkylglycine
decarboxylase, 4-aminobutyrate aminotransferase,
beta-alanine-pyruvate aminotransferase,
adenosylmethionine-8-amino-7-oxononanoate
aminotransferase, and glutamate-1-semialdehyde
2,1-aminomutase. All the enzymes belonging to this
family act on basic amino acids and their derivatives
are involved in transamination or decarboxylation.
Length = 413
Score = 261 bits (670), Expect = 2e-86
Identities = 102/224 (45%), Positives = 134/224 (59%), Gaps = 11/224 (4%)
Query: 17 KSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAI 76
+ + A +VEPIQGE G +VP GYLK +R LC ++ +L IADEVQTG GRTGK+ A
Sbjct: 187 EHPEEVAAVIVEPIQGEGGVIVPPPGYLKALRELCRKHGILLIADEVQTGFGRTGKMFAF 246
Query: 77 HYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLV--PGTHGSTYGGNPLACKLAMTA 134
+ V PDIV LGK L GGL P+ AVL +E+M PG HG T+GGNPLAC A+
Sbjct: 247 EHFGVEPDIVTLGKGLGGGL-PLGAVLGREEIMDAFPAGPGLHGGTFGGNPLACAAALAV 305
Query: 135 LDVILEENMIENAYKMGEIFRSELRS-RLSPDIVPVVRGKGLLNAIVLDK-------SIL 186
L+V+ EE ++ENA ++GE R LR +V VRG+GL+ I L K
Sbjct: 306 LEVLEEEGLLENAAELGEYLRERLRELAEKHPLVGDVRGRGLMIGIELVKDRATKPPDKE 365
Query: 187 EVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDII 230
+ + GL+ +P N+IRL P L ITE+E+ EGLD +
Sbjct: 366 LAAKIIKAALERGLLLRPSGGNVIRLLPPLIITEEEIDEGLDAL 409
>gnl|CDD|235056 PRK02627, PRK02627, acetylornithine aminotransferase; Provisional.
Length = 396
Score = 251 bits (645), Expect = 9e-83
Identities = 92/221 (41%), Positives = 132/221 (59%), Gaps = 5/221 (2%)
Query: 19 NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHY 78
A M+EPIQGE G D YL+ +R LC + +L I DEVQTG+GRTGKL A +
Sbjct: 180 TDKTAAVMLEPIQGEGGVNPADKEYLQALRELCDENGILLILDEVQTGMGRTGKLFAYQH 239
Query: 79 EDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVI 138
+ PDI+ L K L GG+ PI AVLA ++V PG HGST+GGNPLAC A+ +++I
Sbjct: 240 YGIEPDIMTLAKGLGGGV-PIGAVLAKEKVADVFTPGDHGSTFGGNPLACAAALAVIEII 298
Query: 139 LEENMIENAYKMGEIFRSELRSRLSP-DIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKD 197
EE ++ENA ++GE R++LR L + VRG GL+ I LD+ E+ K +
Sbjct: 299 EEEGLLENAAEVGEYLRAKLRELLEKYPGIKEVRGLGLMIGIELDRPAAEIVK---KALE 355
Query: 198 AGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINTMA 238
GL+ +N++RL P L I+++E+ E +D + + +
Sbjct: 356 KGLLINVTGDNVLRLLPPLIISKEEIDEAVDRLEEVLKELL 396
>gnl|CDD|179736 PRK04073, rocD, ornithine--oxo-acid transaminase; Provisional.
Length = 396
Score = 249 bits (637), Expect = 1e-81
Identities = 101/212 (47%), Positives = 144/212 (67%), Gaps = 4/212 (1%)
Query: 19 NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHY 78
PN AF+VEPIQGEAG +P +G+LK R LC + NVLFIADE+QTGLGRTGKL A +
Sbjct: 184 TPNTAAFLVEPIQGEAGINIPPEGFLKAARELCKEENVLFIADEIQTGLGRTGKLFACDW 243
Query: 79 EDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVI 138
++V PD+ ILGKAL GG++PIS V A+ +++G PG+HGST+GGNPLAC +++ AL+V+
Sbjct: 244 DNVTPDMYILGKALGGGVFPISCVAANRDILGVFTPGSHGSTFGGNPLACAVSIAALEVL 303
Query: 139 LEENMIENAYKMGEIFRSELRSRLSPDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDA 198
EE + E + ++GE F+ +L+ +P I VRG+GL + L++ C +K+
Sbjct: 304 EEEKLPERSLELGEYFKEQLKEIDNPMIKE-VRGRGLFIGVELNEP---ARPYCEALKEE 359
Query: 199 GLVTKPISNNIIRLSPALNITEQELREGLDII 230
GL+ K +IR +P L IT++EL + I
Sbjct: 360 GLLCKETHETVIRFAPPLVITKEELDWAFEKI 391
>gnl|CDD|234848 PRK00854, rocD, ornithine--oxo-acid transaminase; Reviewed.
Length = 401
Score = 244 bits (625), Expect = 8e-80
Identities = 110/218 (50%), Positives = 144/218 (66%), Gaps = 1/218 (0%)
Query: 19 NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHY 78
PN AF+VEPIQGEAG ++P GY +VR LC+ NV I DE+QTGLGRTGKLLA +
Sbjct: 185 TPNTVAFLVEPIQGEAGVIIPPAGYFTRVRELCTANNVTLILDEIQTGLGRTGKLLAEEH 244
Query: 79 EDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVI 138
E + D+ ++GKALSGG YP+SAVL++ EV+G L PG HGST+GGNPLAC +A AL V+
Sbjct: 245 EGIEADVTLIGKALSGGFYPVSAVLSNSEVLGVLKPGQHGSTFGGNPLACAVARAALKVL 304
Query: 139 LEENMIENAYKMGEIFRSELRSRLSPDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDA 198
EE MIENA +MG F LRS S IV VRG+GL+ A+ L+ C +K+
Sbjct: 305 TEEGMIENAAEMGAYFLEGLRSIRSN-IVREVRGRGLMLAVELEPEAGGARQYCEALKER 363
Query: 199 GLVTKPISNNIIRLSPALNITEQELREGLDIIINTINT 236
GL+ K ++ IRL+P L IT +++ L+ I +
Sbjct: 364 GLLAKDTHDHTIRLAPPLVITREQVDWALEQIAKVLAH 401
>gnl|CDD|201078 pfam00202, Aminotran_3, Aminotransferase class-III.
Length = 338
Score = 228 bits (584), Expect = 3e-74
Identities = 85/169 (50%), Positives = 112/169 (66%), Gaps = 1/169 (0%)
Query: 15 KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLL 74
K + NI A +VEPIQGE G V P G+L +R +C ++ VL IADEVQTG GRTGKL
Sbjct: 171 KAVHDDNIAAVIVEPIQGEGGVVPPPPGFLAGLREICKKHGVLLIADEVQTGFGRTGKLF 230
Query: 75 AIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTA 134
A + V PDI+ L KAL+GG P+SAVLA E+M PG+HG T+GGNPLAC A+
Sbjct: 231 ACEHYGVTPDIMTLAKALTGG-LPLSAVLATAEIMQAFHPGSHGGTFGGNPLACAAALAV 289
Query: 135 LDVILEENMIENAYKMGEIFRSELRSRLSPDIVPVVRGKGLLNAIVLDK 183
LD+I +EN+++NA + G+ R L + ++ VRGKGL+ AI + K
Sbjct: 290 LDIIEDENLLQNAQEKGDYLRKGLLALQDKPVIGDVRGKGLMIAIEIVK 338
>gnl|CDD|179270 PRK01278, argD, acetylornithine transaminase protein; Provisional.
Length = 389
Score = 220 bits (564), Expect = 1e-70
Identities = 95/228 (41%), Positives = 133/228 (58%), Gaps = 12/228 (5%)
Query: 11 QVP------AKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQ 64
QVP K PN A ++EPIQGE G D +LK +R LC + +L I DEVQ
Sbjct: 159 QVPFGDIEALKAAITPNTAAILIEPIQGEGGIRPAPDEFLKGLRQLCDENGLLLIFDEVQ 218
Query: 65 TGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGN 124
G+GRTGKL A + V PDI+ + K + GG +P+ A LA +E + PGTHGSTYGGN
Sbjct: 219 CGMGRTGKLFAHEWAGVTPDIMAVAKGIGGG-FPLGACLATEEAAKGMTPGTHGSTYGGN 277
Query: 125 PLACKLAMTALDVILEENMIENAYKMGEIFRSELRSRLS--PDIVPVVRGKGLLNAIVLD 182
PLA + LDVIL ++N +MG + +L + PD++ VRGKGLL +
Sbjct: 278 PLAMAVGNAVLDVILAPGFLDNVQRMGLYLKQKLEGLVDRFPDVIEEVRGKGLLLGL--- 334
Query: 183 KSILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDII 230
K ++ D+ ++D GL+T +N++RL P L ITE+E+ E L+ +
Sbjct: 335 KCVVPNRDLVQALRDEGLLTVGAGDNVVRLLPPLIITEEEIDEALERL 382
>gnl|CDD|223238 COG0160, GabT, 4-aminobutyrate aminotransferase and related
aminotransferases [Amino acid transport and metabolism].
Length = 447
Score = 217 bits (556), Expect = 9e-69
Identities = 97/218 (44%), Positives = 134/218 (61%), Gaps = 14/218 (6%)
Query: 24 AFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRP 83
A ++EPIQGE G +VP G+LK +R LC ++ +L IADEVQTG GRTGK+ A + V P
Sbjct: 225 AIIIEPIQGEGGIIVPPKGFLKALRKLCREHGILLIADEVQTGFGRTGKMFAFEHFGVEP 284
Query: 84 DIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENM 143
DIV L K+L GGL P+SAV+ E+M PG HG T+GGNP+AC A+ LDVI EEN+
Sbjct: 285 DIVTLAKSLGGGL-PLSAVVGRAEIM-DWPPGGHGGTFGGNPVACAAALAVLDVIEEENL 342
Query: 144 IENAYKMGEIFRSELRSRLSPD--IVPVVRGKGLLNAI--VLDKSILEVY-----DVCIK 194
+E A ++GE R L L ++ VRG GL+ + V D+ E + +
Sbjct: 343 LERAAELGEYLRDRLE-ELQEKHPLIGDVRGLGLMIGVELVKDRDTKEPDAELAAKIVAR 401
Query: 195 MKDAGLV--TKPISNNIIRLSPALNITEQELREGLDII 230
+ GL+ T N++R+ P L I+++EL EGLDI+
Sbjct: 402 AFERGLLLLTCGPHGNVLRILPPLTISDEELDEGLDIL 439
>gnl|CDD|233098 TIGR00707, argD, transaminase, acetylornithine/succinylornithine
family. This family of proteins, for which ornithine
aminotransferases form an outgroup, consists mostly of
proteins designated acetylornithine aminotransferase.
However, the two very closely related members from E.
coli are assigned different enzymatic activities. One is
acetylornithine aminotransferase (EC 2.6.1.11), ArgD, an
enzyme of arginine biosynthesis, while another is
succinylornithine aminotransferase, an enzyme of the
arginine succinyltransferase pathway, an
ammonia-generating pathway of arginine catabolism (See
MEDLINE:98361920). Members of this family may also act
on ornithine, like ornithine aminotransferase (EC
2.6.1.13) (see MEDLINE:90337349) and on
succinyldiaminopimelate, like
N-succinyldiaminopmelate-aminotransferase (EC 2.6.1.17,
DapC, an enzyme of lysine biosynthesis) (see
MEDLINE:99175097).
Length = 379
Score = 215 bits (550), Expect = 1e-68
Identities = 84/209 (40%), Positives = 116/209 (55%), Gaps = 4/209 (1%)
Query: 22 ICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDV 81
A +VEPIQGE G +LK +R +C + L I DEVQTG+GRTGK A + +
Sbjct: 171 TAAVIVEPIQGEGGVNPASAEFLKALREICKDKDALLIFDEVQTGIGRTGKFFAYEHYGI 230
Query: 82 RPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEE 141
PDI+ L K L GG+ PI A LA +EV PG HGST+GGNPLAC A+ L+VI +E
Sbjct: 231 EPDIITLAKGLGGGV-PIGATLAKEEVAEAFTPGDHGSTFGGNPLACAAALAVLEVIEKE 289
Query: 142 NMIENAYKMGEIFRSELRSRLSPDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLV 201
++EN + G+ F+ L VRGKGL+ I L+ D+ K + GL+
Sbjct: 290 RLLENVKEKGDYFKERLEELGKNYPNKEVRGKGLMLGIELEA---PCKDIVKKALEKGLL 346
Query: 202 TKPISNNIIRLSPALNITEQELREGLDII 230
++R P L IT++E+ E + +
Sbjct: 347 VNCAGPKVLRFLPPLIITKEEIDEAVSAL 375
>gnl|CDD|223239 COG0161, BioA, Adenosylmethionine-8-amino-7-oxononanoate
aminotransferase [Coenzyme metabolism].
Length = 449
Score = 208 bits (531), Expect = 4e-65
Identities = 90/234 (38%), Positives = 134/234 (57%), Gaps = 16/234 (6%)
Query: 21 NICAFMVEPI-QGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYE 79
I AF+VEP+ G G +VP GYLK+VR +C +Y +L IADEV TG GRTGK+ A +
Sbjct: 214 TIAAFIVEPVVGGAGGMLVPPPGYLKRVREICDKYGILLIADEVATGFGRTGKMFACEHA 273
Query: 80 DVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPG-----THGSTYGGNPLACKLAMTA 134
+ PDI+ L K L+GG P+SAVL D + G HG TY GNPLAC A+
Sbjct: 274 GIVPDILCLAKGLTGGYLPLSAVLTSDRIYEAFSDGDAGAFMHGHTYSGNPLACAAALAN 333
Query: 135 LDVILEENMIENAYKMGEIFRSELRSRL-SPDIVPVVRGKGLLNAIVL--DKSILEVYDV 191
LD++ EE+++E ++G ++ L++ L +V VRG GL+ AI L DK+ ++
Sbjct: 334 LDILEEEDLLERVAEIGAYLQAGLQAALADHPLVGDVRGLGLIGAIELVADKATKTPFEA 393
Query: 192 CI------KMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINTMAA 239
+ + GL+ +P+ ++I L P L IT +E+ E +D + ++ A
Sbjct: 394 RVGARVRAAALERGLLIRPL-GDVIYLMPPLIITREEIDELVDALREALDETLA 446
>gnl|CDD|235599 PRK05769, PRK05769, 4-aminobutyrate aminotransferase; Provisional.
Length = 441
Score = 207 bits (529), Expect = 8e-65
Identities = 92/220 (41%), Positives = 130/220 (59%), Gaps = 9/220 (4%)
Query: 22 ICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDV 81
+ A +VEPIQGE G VVP + K++R L +Y +L I DEVQTG+GRTGK+ AI + V
Sbjct: 222 VAAIIVEPIQGEGGYVVPPKNFFKELRKLADKYGILLIDDEVQTGMGRTGKMFAIEHFGV 281
Query: 82 RPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEE 141
PDI+ L KA++GGL P+ AV+ E+M L PG+H +T+GGNP+A A+ L+ + EE
Sbjct: 282 EPDIITLAKAIAGGL-PLGAVIGRAELM-FLPPGSHANTFGGNPVAAAAALATLEEL-EE 338
Query: 142 NMIENAYKMGEIFRSELRSRLSP-DIVPVVRGKGLLNAIVLDKSILEVY-----DVCIKM 195
++ENA K+GE R EL+ + + VRG GL+ + L K E V +
Sbjct: 339 GLLENAQKLGEYLRKELKELKEKYEFIGDVRGLGLMIGVELVKDRKEPDPKLRDKVLYEA 398
Query: 196 KDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTIN 235
GL+ + IR+ P L ITE+E GL+I+ I
Sbjct: 399 FKRGLLLLGAGKSAIRIIPPLIITEEEADIGLEILEEAIK 438
>gnl|CDD|235112 PRK03244, argD, acetylornithine aminotransferase; Provisional.
Length = 398
Score = 202 bits (515), Expect = 3e-63
Identities = 89/217 (41%), Positives = 127/217 (58%), Gaps = 4/217 (1%)
Query: 24 AFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRP 83
A +EPIQGEAG V P GYL R + ++ L + DEVQTG+GRTG A ++ V P
Sbjct: 186 AVFLEPIQGEAGVVPPPAGYLAAAREITDRHGALLVLDEVQTGIGRTGAWFAHQHDGVTP 245
Query: 84 DIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENM 143
D+V L K L GGL PI A LA L PG HGST+GGNP+AC A+ LD I E +
Sbjct: 246 DVVTLAKGLGGGL-PIGACLAFGPAADLLTPGLHGSTFGGNPVACAAALAVLDTIASEGL 304
Query: 144 IENAYKMGEIFRSELRSRLSPDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTK 203
+ENA ++GE R+ + + P +V VRG+GLL IVL + + V ++AG +
Sbjct: 305 LENAERLGEQLRAGIEALGHP-LVDHVRGRGLLLGIVLTAPVAK--AVEAAAREAGFLVN 361
Query: 204 PISNNIIRLSPALNITEQELREGLDIIINTINTMAAK 240
++ ++IRL+P L IT+ ++ + + ++ AA
Sbjct: 362 AVAPDVIRLAPPLIITDAQVDAFVAALPAILDAAAAA 398
>gnl|CDD|179933 PRK05093, argD, bifunctional
N-succinyldiaminopimelate-
aminotransferase/acetylornithine transaminase protein;
Reviewed.
Length = 403
Score = 188 bits (480), Expect = 6e-58
Identities = 81/217 (37%), Positives = 113/217 (52%), Gaps = 15/217 (6%)
Query: 20 PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYE 79
+ CA +VEPIQGE G + +L+ +R LC Q+N L I DEVQTG+GRTG L A +
Sbjct: 183 DHTCAVVVEPIQGEGGVIPATPEFLQGLRELCDQHNALLIFDEVQTGMGRTGDLFAYMHY 242
Query: 80 DVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVIL 139
V PDI+ KAL GG +PI A+L E+ GTHGSTYGGNPLAC +A D+I
Sbjct: 243 GVTPDILTSAKALGGG-FPIGAMLTTAEIASHFKVGTHGSTYGGNPLACAVAEAVFDIIN 301
Query: 140 EENMIENAYKMGEIFRSELRS---RLSPDIVPVVRGKGLLNAIVLDKSILEVY-----DV 191
++E + F L+ + + +RG GLL L Y D
Sbjct: 302 TPEVLEGVKARRQRFVDGLQKINQKY--GVFSEIRGMGLLIGAELK----PQYKGRARDF 355
Query: 192 CIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLD 228
+ G++ +++R +P+L I E ++ EGL
Sbjct: 356 LNAAAEEGVMVLVAGPDVLRFAPSLVIEEADIDEGLA 392
>gnl|CDD|183175 PRK11522, PRK11522, putrescine--2-oxoglutarate aminotransferase;
Provisional.
Length = 459
Score = 189 bits (483), Expect = 6e-58
Identities = 89/226 (39%), Positives = 131/226 (57%), Gaps = 9/226 (3%)
Query: 22 ICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDV 81
+ A ++EPIQGE G ++P +GYL VR LC ++ L I DEVQTG+GRTGK+ A +E+V
Sbjct: 232 VAAVILEPIQGEGGVILPPEGYLTAVRKLCDEFGALLILDEVQTGMGRTGKMFACEHENV 291
Query: 82 RPDIVILGKALSGGLYPISAVLADDEVMGTLV--PGTHGSTYGGNPLACKLAMTALDVIL 139
+PDI+ L KAL GG+ PI A +A +EV L P H +T+GGNPLAC A+ ++V+L
Sbjct: 292 QPDILCLAKALGGGVMPIGATIATEEVFSVLFDNPFLHTTTFGGNPLACAAALATINVLL 351
Query: 140 EENMIENAYKMGEIFRSELR--SRLSPDIVPVVRGKGLLNAIVLDKSILEV-YDVCIKMK 196
E+N+ A + G+ R +R PD+V RGKG+L AI + E+ Y+ +M
Sbjct: 352 EQNLPAQAEQKGDYLLDGFRQLAREYPDLVQEARGKGMLMAIEFVDN--EIGYNFASEMF 409
Query: 197 DAGLVTKPISNN--IIRLSPALNITEQELREGLDIIINTINTMAAK 240
++ NN IR+ P L +T ++ + L + M
Sbjct: 410 RQRVLVAGTLNNAKTIRIEPPLTLTIEQCEQVLKAARKALAAMRVS 455
>gnl|CDD|233000 TIGR00508, bioA, adenosylmethionine-8-amino-7-oxononanoate
transaminase. All members of the seed alignment have
been demonstrated experimentally to act as EC 2.6.1.62,
an enzyme in the biotin biosynthetic pathway. Alternate
names include 7,8-diaminopelargonic acid
aminotransferase, DAPA aminotransferase, and
adenosylmethionine-8-amino-7-oxononanoate
aminotransferase. The gene symbol is bioA in E. coli and
BIO3 in S. cerevisiae [Biosynthesis of cofactors,
prosthetic groups, and carriers, Biotin].
Length = 417
Score = 184 bits (469), Expect = 4e-56
Identities = 82/224 (36%), Positives = 116/224 (51%), Gaps = 10/224 (4%)
Query: 21 NICAFMVEPI-QGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYE 79
I AF+VEP+ QG G YL+K+R LC +Y VL IADE+ TG GRTGKL A +
Sbjct: 195 EIAAFIVEPLVQGAGGMRFYPPEYLRKLRELCDEYGVLLIADEIATGFGRTGKLFACEHA 254
Query: 80 DVRPDIVILGKALSGGLYPISAVLADDEV----MGTLVPGT--HGSTYGGNPLACKLAMT 133
V PDI+ L K L+GG P++A L DE+ HG TY GNPLAC A+
Sbjct: 255 GVTPDILCLSKGLTGGYLPLAATLTTDEIYEAFYSDDEGKAFMHGHTYTGNPLACAAALA 314
Query: 134 ALDVILEENMIENAYKMGEIFRSELRSRLSPDIVPVVRGKGLLNAIVL--DKSILEVYDV 191
+LD++ EE+ +E ++ R+ L V VR G + A+ L D +
Sbjct: 315 SLDLLEEEDWLEQVARIEAQLRAGLAPLRDHPGVADVRVLGAIGAVELVRDVEPYIGAKI 374
Query: 192 CIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTIN 235
+ G++ +P+ N+I L P IT++EL + I I+
Sbjct: 375 QQFFLERGVLLRPL-GNVIYLMPPYIITDEELEKLTAAIKEAID 417
>gnl|CDD|179505 PRK02936, argD, acetylornithine aminotransferase; Provisional.
Length = 377
Score = 179 bits (455), Expect = 2e-54
Identities = 80/217 (36%), Positives = 124/217 (57%), Gaps = 5/217 (2%)
Query: 19 NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHY 78
N + A M+E +QGE G + D +L++V+ LC ++ L I DEVQTG+GRTG L A
Sbjct: 165 NEEVAAVMLEVVQGEGGVIPADPAFLQEVQTLCKKFGALLIIDEVQTGIGRTGTLFAYEQ 224
Query: 79 EDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVI 138
+ PDIV + K L G+ P+ A++ E+ PG+HGST+GGNPLA A L VI
Sbjct: 225 FGLDPDIVTVAKGLGNGI-PVGAMIGKKELGTAFGPGSHGSTFGGNPLAMAAAKEVLQVI 283
Query: 139 LEENMIENAYKMGEIFRSELRSRLSP-DIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKD 197
+ + +E + GE F +L+ L + V +RGKGL+ I + EV V ++++
Sbjct: 284 KQPSFLEEVQEKGEYFLQKLQEELEHLECVKNIRGKGLMIGIECTE---EVAPVIEQLRE 340
Query: 198 AGLVTKPISNNIIRLSPALNITEQELREGLDIIINTI 234
GL+ N+IRL P L +T++EL + + ++ +
Sbjct: 341 EGLLVLSAGPNVIRLLPPLVVTKEELDQAVYLLKKVL 377
>gnl|CDD|181234 PRK08117, PRK08117, 4-aminobutyrate aminotransferase; Provisional.
Length = 433
Score = 179 bits (456), Expect = 4e-54
Identities = 85/230 (36%), Positives = 135/230 (58%), Gaps = 15/230 (6%)
Query: 22 ICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDV 81
+ A ++EP+ GE G +VP +LKK+R +C ++ +L I DEVQTG GRTG+ A V
Sbjct: 208 VAAVIIEPVLGEGGYIVPPKSFLKKLREICDRHGILLIFDEVQTGFGRTGEWFAAQTFGV 267
Query: 82 RPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEE 141
PDI+ + K ++ GL P+SAV+A E+M G+HG+T+GGNP+AC A+ L+VI EE
Sbjct: 268 VPDIMTIAKGIASGL-PLSAVVASKELMEQWPLGSHGTTFGGNPVACAAALATLEVIKEE 326
Query: 142 NMIENAYKMGEIFRSELRS-RLSPDIVPVVRGKGLLNAIVLDK--------SILEVYDVC 192
+++NA +MG L + ++ VRG GL+ I + ++ ++ D C
Sbjct: 327 KLLDNANEMGAYALERLEVLKEKHPVIGDVRGIGLMIGIEIVDPDGEPDGDAVEKILDKC 386
Query: 193 IKMKDAGLVTKPISN--NIIRLSPALNITEQELREGLDIIINTINTMAAK 240
+ + GL+ N N++R+ P L +T++E+ EGLDI+ + AK
Sbjct: 387 L---EKGLLFYLCGNAGNVLRMIPPLTVTKEEIDEGLDILDEALTEYEAK 433
>gnl|CDD|132290 TIGR03246, arg_catab_astC, succinylornithine transaminase family.
Members of the seed alignment for this protein family
are the enzyme succinylornithine transaminase (EC
2.6.1.81), which catalyzes the third of five steps in
arginine succinyltransferase (AST) pathway, an
ammonia-releasing pathway of arginine degradation. All
seed alignment sequences are found within arginine
succinyltransferase operons, and all proteins that score
above 820.0 bits should function as succinylornithine
transaminase. However, a number of sequences extremely
closely related in sequence, found in different genomic
contexts, are likely to act in different biological
processes and may act on different substrates. This
model is desigated subfamily rather than equivalog,
pending further consideration, for this reason [Energy
metabolism, Amino acids and amines].
Length = 397
Score = 178 bits (453), Expect = 4e-54
Identities = 82/211 (38%), Positives = 120/211 (56%), Gaps = 3/211 (1%)
Query: 20 PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYE 79
CA +VEPIQGE G V D +LK +R LC ++N L I DEVQTG+GRTG+L A +
Sbjct: 178 DKTCAVIVEPIQGEGGVVPADPAFLKGLRELCDRHNALLIFDEVQTGVGRTGELYAYMHY 237
Query: 80 DVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVIL 139
V PDI+ KAL GG +PI A+L E+ L GTHG+TYGGNPLAC +A LD++
Sbjct: 238 GVTPDILTSAKALGGG-FPIGAMLTTTEIAAHLKVGTHGTTYGGNPLACAVAGKVLDLVN 296
Query: 140 EENMIENAYKMGEIFRSELRS-RLSPDIVPVVRGKGLLNAIVLDKSIL-EVYDVCIKMKD 197
++ + ++F L ++ +RGKGLL VL ++ + +
Sbjct: 297 TPELLAGVKQRHDLFVDGLEKINARYNVFSEIRGKGLLIGAVLTEAYQGKAKQFVNAAAE 356
Query: 198 AGLVTKPISNNIIRLSPALNITEQELREGLD 228
G++ N++R +P+L I++ ++ EGL
Sbjct: 357 EGVIALIAGPNVVRFAPSLVISDDDIDEGLA 387
>gnl|CDD|181401 PRK08360, PRK08360, 4-aminobutyrate aminotransferase; Provisional.
Length = 443
Score = 176 bits (449), Expect = 4e-53
Identities = 82/217 (37%), Positives = 126/217 (58%), Gaps = 9/217 (4%)
Query: 22 ICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDV 81
+ A EPIQG+AG +VP + Y KK++ + ++ +L + DEVQ+GLGRTGK AI + V
Sbjct: 205 VAALFAEPIQGDAGMIVPPEDYFKKLKKILDEHGILLVVDEVQSGLGRTGKWFAIEHFGV 264
Query: 82 RPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEE 141
PDI+ LGK L GGL PISA + E+M +L P H T GNP+A A+ ++ I E+
Sbjct: 265 EPDIITLGKPLGGGL-PISATIGRAEIMDSLPPLAHAFTLSGNPVASAAALAVIEEIEEK 323
Query: 142 NMIENAYKMGEIFRSELRSRLSP-DIVPVVRGKGLLNAIVL-------DKSILEVYDVCI 193
N+++ A K+G + L +++ VRG GL+ + L +++ E V
Sbjct: 324 NLLKRAEKLGNYTKKRLEEMKKKHELIGDVRGIGLMIGVDLVKDRETKERAYEEAAKVVW 383
Query: 194 KMKDAGLVTKPISNNIIRLSPALNITEQELREGLDII 230
+ + GL+ S N++R+ P L I ++ L EGLDI+
Sbjct: 384 RAWELGLIVTFFSGNVLRIQPPLTIEKEVLDEGLDIL 420
>gnl|CDD|177748 PLN00144, PLN00144, acetylornithine transaminase.
Length = 382
Score = 173 bits (441), Expect = 2e-52
Identities = 87/218 (39%), Positives = 119/218 (54%), Gaps = 6/218 (2%)
Query: 22 ICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDV 81
A VEP+QGE G +L+ +RALC + L + DEVQ GLGRTG L A V
Sbjct: 168 TAAVFVEPVQGEGGIYPATKEFLQGLRALCDEAGALLVFDEVQCGLGRTGYLWAHEAYGV 227
Query: 82 RPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEE 141
PDI+ L K L+GGL PI AVL ++V + PG HGST+ G PL C A+ LD I +
Sbjct: 228 EPDIMTLAKPLAGGL-PIGAVLVTEKVASAINPGDHGSTFAGGPLVCNAALAVLDKISKP 286
Query: 142 NMIENAYKMGEIFRSELRSRLSP-DIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDAGL 200
+ + K GE R LR +L V VRG GLL I LD + D C +D+GL
Sbjct: 287 GFLASVAKKGEYLRELLRRKLGGNPHVKEVRGVGLLVGIQLDVPAGPLVDAC---RDSGL 343
Query: 201 VTKPISN-NIIRLSPALNITEQELREGLDIIINTINTM 237
+ +++RL P L I+E EL + ++I+ + + +
Sbjct: 344 LVLTAGKGDVVRLVPPLVISEAELEQAVEILADCLPAL 381
>gnl|CDD|183486 PRK12381, PRK12381, bifunctional succinylornithine
transaminase/acetylornithine transaminase; Provisional.
Length = 406
Score = 166 bits (421), Expect = 3e-49
Identities = 83/218 (38%), Positives = 121/218 (55%), Gaps = 15/218 (6%)
Query: 19 NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHY 78
+ CA +VEPIQGE G + D +L+ +R LC ++N L I DEVQTG+GRTG+L A +
Sbjct: 181 DDQTCAVIVEPIQGEGGVIPADKAFLQGLRELCDRHNALLIFDEVQTGVGRTGELYAYMH 240
Query: 79 EDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVI 138
V PD++ KAL GG +PI A+L ++ + GTHG+TYGGNPLA +A L++I
Sbjct: 241 YGVTPDVLTTAKALGGG-FPIGAMLTTEKCASVMTVGTHGTTYGGNPLASAVAGKVLELI 299
Query: 139 LEENMIENAYKMGEIFRSELRS-RLSPDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKD 197
M+ + + F L + + +RG GLL VL+ + K K
Sbjct: 300 NTPEMLNGVKQRHDWFVERLNTINARYGLFSEIRGLGLLIGCVLNA------EYAGKAKQ 353
Query: 198 -------AGLVTKPISNNIIRLSPALNITEQELREGLD 228
AG++ N++R +PALNI+E+E+ GLD
Sbjct: 354 ISQEAAKAGVMVLIAGPNVVRFAPALNISEEEITTGLD 391
>gnl|CDD|132415 TIGR03372, putres_am_tran, putrescine aminotransferase. Members of
this family are putrescine aminotransferase, as found in
Escherichia coli, Erwinia carotovora subsp. atroseptica,
and closely related species. This pyridoxal phosphate
enzyme, as characterized in E. coli, can act also on
cadaverine and, more weakly, spermidine [Central
intermediary metabolism, Polyamine biosynthesis].
Length = 442
Score = 166 bits (421), Expect = 6e-49
Identities = 85/219 (38%), Positives = 126/219 (57%), Gaps = 7/219 (3%)
Query: 10 KQVPAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGR 69
K + K+ ++ A ++EPIQGE G ++P +GYL VRALC ++ L I DEVQTG+GR
Sbjct: 213 KALNECKKTGDDVAAIILEPIQGEGGVILPPEGYLPAVRALCDEFGALLILDEVQTGMGR 272
Query: 70 TGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLV--PGTHGSTYGGNPLA 127
TGK+ A +E V+PDI+ L KAL GG+ PI A +A + V L P H +T+GGNPLA
Sbjct: 273 TGKMFACEHEGVQPDILCLAKALGGGVMPIGATIATEAVFSVLFDNPFLHTTTFGGNPLA 332
Query: 128 CKLAMTALDVILEENMIENAYKMGEIFRSELR--SRLSPDIVPVVRGKGLLNAIVLDKSI 185
C A+ ++ +LE+N+ A G+ + + PD++ RGKGLL AI +
Sbjct: 333 CAAALATINELLEKNLPAQAAIKGDFLLDGFQQLAAEYPDLIIEARGKGLLMAIEFRDNE 392
Query: 186 LEVYDVCIKMKDAGLVTKPISNN--IIRLSPALNITEQE 222
+ Y ++ ++ NN IR+ P L IT ++
Sbjct: 393 IG-YAFAKELFQQNILVAGTLNNAKSIRIEPPLTITIEQ 430
>gnl|CDD|235685 PRK06058, PRK06058, 4-aminobutyrate aminotransferase; Provisional.
Length = 443
Score = 164 bits (417), Expect = 2e-48
Identities = 89/231 (38%), Positives = 129/231 (55%), Gaps = 15/231 (6%)
Query: 9 SKQVPAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLG 68
KQV A N+ A ++EPIQGE G +VP +G+L + C + V+FIADEVQTG
Sbjct: 212 EKQVGAD-----NLAAVIIEPIQGEGGFIVPAEGFLPALLEWCRENGVVFIADEVQTGFA 266
Query: 69 RTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLAC 128
RTG A +E + PD++ K ++GGL P+SAV E+M PG G TYGGNP+AC
Sbjct: 267 RTGAWFACEHEGIVPDLITTAKGIAGGL-PLSAVTGRAEIMDAPHPGGLGGTYGGNPVAC 325
Query: 129 KLAMTALDVILEENMIENAYKMGEIFRSELRS-RLSPDIVPVVRGKGLLNAIVLDKSILE 187
A+ A++ I E++++ A ++ + LR+ D + VRG+G + AI L K
Sbjct: 326 AAALAAIETIEEDDLVARARQIEALMTDRLRALAAEDDRIGDVRGRGAMIAIELVKPGTT 385
Query: 188 VYD------VCIKMKDAGLV--TKPISNNIIRLSPALNITEQELREGLDII 230
D + AG++ T N+IRL P L I ++ LREGLD++
Sbjct: 386 EPDAELTKALAAAAHAAGVIVLTCGTYGNVIRLLPPLVIGDELLREGLDVL 436
>gnl|CDD|235884 PRK06917, PRK06917, hypothetical protein; Provisional.
Length = 447
Score = 162 bits (412), Expect = 1e-47
Identities = 87/244 (35%), Positives = 123/244 (50%), Gaps = 25/244 (10%)
Query: 22 ICAFMVEPIQGEAG-AVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYED 80
I AF+ EPI G AG AVVP GY K ++ +C Y++LFIADEV TGLGRTG + A+ +
Sbjct: 200 IAAFIAEPIIGAAGAAVVPPKGYYKVIKEICDHYDILFIADEVMTGLGRTGAMFAMEHWG 259
Query: 81 VRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTH----GSTYGGNPLACKLAMTALD 136
V PDI+ LGK L G PI+A + D VM ++ G+ G T NPL+ A+ L+
Sbjct: 260 VEPDIMTLGKGLGAGYTPIAATVVSDRVMEPILRGSRSIMSGHTLSANPLSAATALAVLE 319
Query: 137 VILEENMIENAYKMGEIFRSELRS--RLSPDIVPVVRGKGLLNAI--VLDKSILEVYD-- 190
+ + N+ E A + GE L+ + S I+ VRGKGLL + V DK + +
Sbjct: 320 YMEKHNLPEKAAEKGEYLIKGLQKVQQQST-IIGDVRGKGLLIGVEFVADKKTKQPFSKS 378
Query: 191 ------VCIKMKDAGLVTKPISNNI-------IRLSPALNITEQELREGLDIIINTINTM 237
+ GL+ P + ++P + IT EL E L I ++ M
Sbjct: 379 QAVASELISVAAKNGLLLYPAVAGQDGKEGDAVIIAPPMTITYSELDELLSIFAKSVEEM 438
Query: 238 AAKK 241
K
Sbjct: 439 MQKG 442
>gnl|CDD|180746 PRK06916, PRK06916, adenosylmethionine--8-amino-7-oxononanoate
transaminase; Provisional.
Length = 460
Score = 162 bits (412), Expect = 2e-47
Identities = 85/231 (36%), Positives = 125/231 (54%), Gaps = 19/231 (8%)
Query: 22 ICAFMVEP-IQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYED 80
I A +VEP +QG G + GYLK +R LC++YNVLFI DEV TG GRTGK+ A +E+
Sbjct: 224 IAAIIVEPLVQGAGGMITMPKGYLKGLRNLCTKYNVLFITDEVATGFGRTGKMFACEHEN 283
Query: 81 VRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGT-------HGSTYGGNPLACKLAMT 133
V PDI+ GK L+GG PI+ + DE+ HG +Y GNPL C +A+
Sbjct: 284 VTPDIMTAGKGLTGGYLPIAITVTTDEIYNAFYGDYEEQKTFFHGHSYTGNPLGCAVALA 343
Query: 134 ALDVILEENMIENAYKMGEIFRSELRSRLSPDIVPVVRGKGLLNAI--VLDKSILEVYD- 190
L++ + N+IE + E ++L + V +R GL+ I V +K E ++
Sbjct: 344 NLELYEKTNLIEQVARKTEYVATQLEDLFALKHVGDIRQLGLMVGIELVKNKETKEPFEW 403
Query: 191 -------VCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTI 234
VC + ++ G++T+P+ N I+ + P L T EL E L I+ I
Sbjct: 404 TERVGVQVCKRSRELGMLTRPLGNTIVFMPP-LASTIDELDEMLRILYKAI 453
>gnl|CDD|236027 PRK07483, PRK07483, hypothetical protein; Provisional.
Length = 443
Score = 158 bits (402), Expect = 5e-46
Identities = 83/244 (34%), Positives = 122/244 (50%), Gaps = 25/244 (10%)
Query: 21 NICAFMVEPIQGE-AGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYE 79
+ AF+ E + G AGAV P GY K++R +C +Y VL I DEV G+GRTG L A +
Sbjct: 199 TVAAFVAETVVGATAGAVPPVPGYFKRIREVCDRYGVLLILDEVMCGMGRTGTLFACEED 258
Query: 80 DVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGT----HGSTYGGNPLACKLAMTAL 135
V PD+V + K L G PI AVLA D + + G+ HG TY G+ AC A+
Sbjct: 259 GVAPDLVTIAKGLGAGYQPIGAVLASDRIYDAIADGSGFFQHGHTYLGHATACAAALAVQ 318
Query: 136 DVILEENMIENAYKMGEIFRSELRSRLS--PDIVPVVRGKGLLNAI--VLDKSILEVYDV 191
VI E+ ++ N GE R+ LR RL P V +RG+GL + V D++ +D
Sbjct: 319 RVIAEDGLLANVRARGEQLRARLRERLGQHPH-VGDIRGRGLFVGVELVADRATKAPFDP 377
Query: 192 CIKM--------KDAGLVTKPISNNI-------IRLSPALNITEQELREGLDIIINTINT 236
+K+ GL+ P+ I + L+P IT ++ E ++ + + I+
Sbjct: 378 ALKLHARIKREAMARGLMVYPMGGTIDGVRGDHVLLAPPFIITAAQIDEIVERLGDAIDA 437
Query: 237 MAAK 240
A
Sbjct: 438 ALAA 441
>gnl|CDD|129783 TIGR00700, GABAtrnsam, 4-aminobutyrate aminotransferase,
prokaryotic type. This enzyme is a class III
pyridoxal-phosphate-dependent aminotransferase. This
model describes known bacterial examples of the enzyme.
The best archaeal matches are presumed but not trusted
to have the equivalent function. The degree of sequence
difference between this set and known eukaryotic
(mitochondrial) examples is greater than the distance to
some proteins known to have different functions, and so
separate models are built for prokaryotic and eukaryotic
sets. E. coli has two isozymes. Alternate names include
GABA transaminase, gamma-amino-N-butyrate transaminase,
and beta-alanine--oxoglutarate aminotransferase [Central
intermediary metabolism, Other].
Length = 420
Score = 156 bits (397), Expect = 1e-45
Identities = 80/219 (36%), Positives = 118/219 (53%), Gaps = 10/219 (4%)
Query: 21 NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYED 80
N+ A ++EP+QGE G +VP G++ + C ++ ++FIADEVQTG RTG + A +E
Sbjct: 197 NVAALVIEPVQGEGGFIVPAKGFVPALLDWCREHGIVFIADEVQTGFARTGAMFACEHEG 256
Query: 81 VRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILE 140
PD++ K+L+ GL P+S V E+M PG G TY GNPLAC A+ L +I
Sbjct: 257 PEPDLITTAKSLADGL-PLSGVTGRAEIMDAPAPGGLGGTYAGNPLACAAALAVLAIIES 315
Query: 141 ENMIENAYKMGEIFRSELRS-RLSPDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDAG 199
E +IE A ++G + L + + + VRG G + A+ L D + + A
Sbjct: 316 EGLIERARQIGRLVTDRLTTLKAVDPRIGDVRGLGAMIAVELVDPGTTEPDAGLAERIAT 375
Query: 200 --------LVTKPISNNIIRLSPALNITEQELREGLDII 230
L+T + NIIR P L I ++ L EGLDI+
Sbjct: 376 AAHAAGLLLLTCGMFGNIIRFLPPLTIGDELLSEGLDIL 414
>gnl|CDD|181707 PRK09221, PRK09221, beta alanine--pyruvate transaminase;
Provisional.
Length = 445
Score = 156 bits (398), Expect = 2e-45
Identities = 74/230 (32%), Positives = 119/230 (51%), Gaps = 14/230 (6%)
Query: 21 NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYED 80
I A +VEP+ G AG +VP GYL+++R +C ++ +L I DEV TG GR G A
Sbjct: 218 TIAAVIVEPMAGSAGVLVPPKGYLQRLREICDKHGILLIFDEVITGFGRLGAAFAAERFG 277
Query: 81 VRPDIVILGKALSGGLYPISAVLADDEVMGTLVPG-------THGSTYGGNPLACKLAMT 133
V PDI+ K L+ G P+ AV+A DE+ + G HG TY +P+AC +
Sbjct: 278 VTPDIITFAKGLTNGAIPMGAVIASDEIYDAFMQGPEYAIEFFHGYTYSAHPVACAAGLA 337
Query: 134 ALDVILEENMIENAYKMGEIFRSELRS-RLSPDIVPVVRGKGLLNAIVL----DKSILEV 188
LD+ EE++ E A ++ F + S + P ++ +R GL+ I L
Sbjct: 338 TLDIYREEDLFERAAELAPYFEDAVHSLKGLPHVID-IRNIGLVAGIELAPRPGAPGARG 396
Query: 189 YDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINTMA 238
Y+ +K + GL+ + + + I LSP L I + ++ E +D + + + +A
Sbjct: 397 YEAFMKCFEKGLLVR-YTGDTIALSPPLIIEKAQIDELVDALGDALRAVA 445
>gnl|CDD|236032 PRK07495, PRK07495, 4-aminobutyrate aminotransferase; Provisional.
Length = 425
Score = 155 bits (394), Expect = 4e-45
Identities = 81/231 (35%), Positives = 118/231 (51%), Gaps = 28/231 (12%)
Query: 22 ICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDV 81
+ A ++EP+QGE G ++K +R LC Q+ +L IADEVQTG RTGKL A+ + +V
Sbjct: 199 VAAIIIEPVQGEGGFYPAPAAFMKALRELCDQHGILLIADEVQTGFARTGKLFAMEHHEV 258
Query: 82 RPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEE 141
D+ + K L+GG P++AV E+M PG G TYGGNPL A LDVI EE
Sbjct: 259 AADLTTMAKGLAGGF-PLAAVTGRAEIMDAPGPGGLGGTYGGNPLGIAAAHAVLDVIEEE 317
Query: 142 NMIENAYKMGEIFR---SELRSRLSPDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDA 198
++ E A ++G + + LR + P+I +RG G +NA+ E D + A
Sbjct: 318 DLCERANQLGNRLKQRLASLRETV-PEIAD-IRGPGFMNAV-------EFNDADSGLPSA 368
Query: 199 G---------------LVTKPISNNIIRLSPALNITEQELREGLDIIINTI 234
L+T + N+IR + I + E LDI+ +I
Sbjct: 369 EFANRVRLKALEKGLILLTCGVHGNVIRFLAPITIQDDVFAEALDILEASI 419
>gnl|CDD|179868 PRK04612, argD, acetylornithine transaminase protein; Provisional.
Length = 408
Score = 155 bits (392), Expect = 5e-45
Identities = 85/216 (39%), Positives = 123/216 (56%), Gaps = 17/216 (7%)
Query: 21 NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYED 80
++ A M+EPIQGE G + G+L +VRALC Q++ L + DE+Q G+GRTG L A E
Sbjct: 187 DVAAVMLEPIQGEGGVMPAAPGFLARVRALCDQHDALLVLDEIQCGMGRTGTLFAHWQEQ 246
Query: 81 VRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILE 140
V PDIV L KAL GG +PI A+LA +V T+ G HG+T+GGNPLA +A AL +
Sbjct: 247 VTPDIVTLAKALGGG-FPIGAMLAGPKVAETMQFGAHGTTFGGNPLAAAVARVALRKLAS 305
Query: 141 ENMIENAYKMGEIFRSELRSRLSPD--IVPVVRGKGLLNAIVLDK-------SILEVYDV 191
+ N + R+ L L+ + + VRG+GL+ VL +IL++
Sbjct: 306 PQIAANVARQSAALRAGL-EALNAEFGVFAQVRGRGLMLGAVLAPAHAGQAGAILDL--- 361
Query: 192 CIKMKDAGLVTKPISNNIIRLSPALNITEQELREGL 227
+ GL+ +++R PALN+T+ EL +GL
Sbjct: 362 ---AAEHGLLLLQAGPDVLRFVPALNLTDAELADGL 394
>gnl|CDD|179803 PRK04260, PRK04260, acetylornithine aminotransferase; Provisional.
Length = 375
Score = 153 bits (389), Expect = 7e-45
Identities = 76/213 (35%), Positives = 119/213 (55%), Gaps = 5/213 (2%)
Query: 19 NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHY 78
N N A M+E +QGE+G + D ++K + C + +L I DEVQTG+GRTGKL A +
Sbjct: 163 NKNTAAVMLELVQGESGVLPADKDFVKALADYCQETGILLIVDEVQTGMGRTGKLYAFEH 222
Query: 79 EDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVI 138
+ PDI L K L+ G+ P+ A+LA + G G+HGST+GGN L+ A LD++
Sbjct: 223 YGIEPDIFTLAKGLANGV-PVGAMLAKSSLGGAFGYGSHGSTFGGNKLSMAAASATLDIM 281
Query: 139 LEENMIENAYKMGEIFRSELRSRLS-PDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKD 197
L +E A + G + +L+ L + V VRG G + I + ++ + +D
Sbjct: 282 LTAGFLEQALENGNYLQEQLQKALQDKETVTTVRGLGYMIGIETTADLSQLVE---AARD 338
Query: 198 AGLVTKPISNNIIRLSPALNITEQELREGLDII 230
GL+ N+IRL P L +T++E+ +G+ I+
Sbjct: 339 KGLIVLTAGTNVIRLLPPLTLTKEEIEQGIAIL 371
>gnl|CDD|168967 PRK07481, PRK07481, hypothetical protein; Provisional.
Length = 449
Score = 154 bits (392), Expect = 1e-44
Identities = 78/234 (33%), Positives = 117/234 (50%), Gaps = 33/234 (14%)
Query: 22 ICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDV 81
I AF+ EP+QG G +VP + VR +C ++ +L IADEV TG GRTG V
Sbjct: 214 IAAFIAEPVQGAGGVIVPPANFWPLVREVCDRHGILLIADEVVTGFGRTGSWFGSRGWGV 273
Query: 82 RPDIVILGKALSGGLYPISAVLADDEVMGTLVPGT-------HGSTYGGNPLACKLAMTA 134
+PDI+ L K ++ G P+ A + + + HG TY G+P+AC A+
Sbjct: 274 KPDIMCLAKGITSGYVPLGATMVNARIADAFEANADFGGAIMHGYTYSGHPVACAAALAT 333
Query: 135 LDVILEENMIENAYKMGEIFRSELRSRLSP-----DIVPVVRGKGLLNAI--VLDKSILE 187
LD+++ E++ NA K G L L P ++V VRGKGL+ A+ V DK+ E
Sbjct: 334 LDIVVREDLPANAAKRGA----YLLEGLQPLKERFELVGDVRGKGLMLALDLVADKATRE 389
Query: 188 -----------VYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDII 230
V DV ++ G++ +P II LSP L I +++ +D +
Sbjct: 390 PIDPSKGYANAVADVA---RENGVLVRPSGTKII-LSPPLVIQREDVDRIVDAL 439
>gnl|CDD|235885 PRK06918, PRK06918, 4-aminobutyrate aminotransferase; Reviewed.
Length = 451
Score = 153 bits (387), Expect = 6e-44
Identities = 81/219 (36%), Positives = 129/219 (58%), Gaps = 11/219 (5%)
Query: 22 ICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDV 81
I A ++EP+QGE G +VP ++++VR +CS++ +LF+ADE+QTG RTGK AI + DV
Sbjct: 220 IAAVVMEPVQGEGGFIVPSKKFVQEVRNICSEHGILFVADEIQTGFARTGKYFAIEHFDV 279
Query: 82 RPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEE 141
PD++ + K+L G+ PIS V+ E+M PG G TY G+PL C A+ LD+I +E
Sbjct: 280 VPDLITVSKSLGAGV-PISGVIGRKEIMDESAPGELGGTYAGSPLGCAAALAVLDIIEKE 338
Query: 142 NMIENAYKMGEIFRSELRS-RLSPDIVPVVRGKGLLNAI--VLDKSILE-----VYDVCI 193
N+ + A ++G++ + + + + VRG G + A V D+ E ++C
Sbjct: 339 NLNDRAIELGKVVMNRFEEMKNKYNCIGDVRGLGAMCAFELVQDRKTKEPDKTLTANICK 398
Query: 194 KMKDAG--LVTKPISNNIIRLSPALNITEQELREGLDII 230
+ G L++ N+IR+ L IT+++L EGL II
Sbjct: 399 EANKRGLLLLSAGTYGNVIRVLMPLVITDEQLEEGLTII 437
>gnl|CDD|180330 PRK05965, PRK05965, hypothetical protein; Provisional.
Length = 459
Score = 152 bits (387), Expect = 9e-44
Identities = 78/220 (35%), Positives = 113/220 (51%), Gaps = 17/220 (7%)
Query: 21 NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYED 80
N+ AF EPIQG G +VP G+LK +R C + +LF+ADEV TG GRTG L A E
Sbjct: 215 NVAAFFCEPIQGSGGVIVPPKGWLKAMREACRELGILFVADEVITGFGRTGPLFACEAEG 274
Query: 81 VRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGT-------HGSTYGGNPLACKLAMT 133
V PD++ + K L+ G P+ AVL D V + G HG TY +P++ + +
Sbjct: 275 VVPDLMTVAKGLTSGYVPMGAVLMSDHVYQGIADGAGAAAPVGHGYTYSAHPVSAAVGLE 334
Query: 134 ALDVILEENMIENAYKMGEIFRSELRSRLSPDIVPVVRGKGLLNAI--VLDKSILEVYDV 191
L + E ++ N K G F + L + + +V VRG+GLL A+ V DK+ +D
Sbjct: 335 VLRLYHEGGLLANGQKAGPRFAAGLDALRAHPLVGDVRGRGLLGALELVADKATKTPFDA 394
Query: 192 CIKMKDA--------GLVTKPISNNIIRLSPALNITEQEL 223
+ D GLV + + ++ +PAL TE E
Sbjct: 395 ALDPADRIFDRAYANGLVFRAFGDGVLGFAPALCCTEGEF 434
>gnl|CDD|183999 PRK13360, PRK13360, omega amino acid--pyruvate transaminase;
Provisional.
Length = 442
Score = 151 bits (384), Expect = 2e-43
Identities = 75/230 (32%), Positives = 118/230 (51%), Gaps = 14/230 (6%)
Query: 21 NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYED 80
I A +VEP+ G G ++P GYL+++R +C ++ +L I DEV TG GR G A Y
Sbjct: 215 TIAAVIVEPVAGSTGVLIPPKGYLQRLREICDKHGILLIFDEVITGFGRLGAPFAAQYFG 274
Query: 81 VRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGT-------HGSTYGGNPLACKLAMT 133
V PD++ K L+ G P+ AV E+ + G HG TY G+PLAC A+
Sbjct: 275 VTPDLLTCAKGLTNGAIPMGAVFVSSEIHDAFMQGPEAGIEFFHGYTYSGHPLACAAALA 334
Query: 134 ALDVILEENMIENAYKMGEIFRSELRS-RLSPDIVPVVRGKGLLNAIVLD----KSILEV 188
LD+ E ++ A ++ + L S R +P ++ +R GL+ A+ L K
Sbjct: 335 TLDLYEREGLLTRAARLAPYWEDALHSLRDAPHVID-IRNLGLVGAVELAPRDGKPGKRA 393
Query: 189 YDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINTMA 238
Y+V +K + GL+ + + +I+ LSP L I E ++ E DI+ +
Sbjct: 394 YEVFLKCFEKGLMIR-YTGDILALSPPLIIEEAQIDELFDILAQALKETI 442
>gnl|CDD|235656 PRK05964, PRK05964, adenosylmethionine--8-amino-7-oxononanoate
transaminase; Provisional.
Length = 423
Score = 150 bits (382), Expect = 3e-43
Identities = 76/238 (31%), Positives = 112/238 (47%), Gaps = 28/238 (11%)
Query: 17 KSNPNICAFMVEP-IQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLA 75
K I AF+VEP +QG G + D YL ++R +C ++ VL I DE+ TG GRTG L A
Sbjct: 195 KHAGEIAAFIVEPLVQGAGGMLFYDPRYLAELRRICDRHGVLLIFDEIATGFGRTGTLFA 254
Query: 76 IHYEDVRPDIVILGKALSGGLYPISAVLADDEV---------MGTLVPGTHGSTYGGNPL 126
V PDI+ L K L+GG P++A L E+ + H +Y NPL
Sbjct: 255 CEQAGVSPDIMCLSKGLTGGYLPLAATLCTAEIFEAFYSDDRAKAFM---HSPSYTANPL 311
Query: 127 ACKLAMTALDVILEENMIENAYKMGEIFRSEL-RSRLSPDIVPVVRGKGLLNAIVLDKS- 184
AC A +LD+ +E ++E + L R P + VR G + A+ LD+
Sbjct: 312 ACAAANASLDLFEDEPVLERVAALSAGLAEGLEPFRDLPGVAD-VRVLGAIGAVELDRPV 370
Query: 185 ----ILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINTMA 238
+ + + G++ +P+ N I L P IT +E LD I + I +A
Sbjct: 371 LERDGPALRAFAL---ERGVLLRPL-GNTIYLMPPYIITAEE----LDRITDAIVEVA 420
>gnl|CDD|181078 PRK07678, PRK07678, aminotransferase; Validated.
Length = 451
Score = 151 bits (383), Expect = 3e-43
Identities = 80/236 (33%), Positives = 121/236 (51%), Gaps = 29/236 (12%)
Query: 22 ICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDV 81
I A ++EPI G ++P Y+K V+ +C ++ L I+DEV G GRTGK V
Sbjct: 214 IAAVIMEPIITGGGVLMPPQDYMKAVKEICQKHGALLISDEVICGFGRTGKAFGFMNYGV 273
Query: 82 RPDIVILGKALSGGLYPISAVLADDEVMGTLVPGT-------HGSTYGGNPLACKLAMTA 134
+PDI+ + K ++ P+SA E+ G H +T+GGNP AC LA+
Sbjct: 274 KPDIITMAKGITSAYLPLSATAVKKEIYEAFK-GKGEYEHFRHVNTFGGNPAACALALKN 332
Query: 135 LDVILEENMIENAYKMGEIFRSELRSRLS--PDIVPVVRGKGLLNAI--VLDKSILEVYD 190
L+++ EN+IE + ++GE+ +L+ L P +V +RGKGLL I V DK E D
Sbjct: 333 LEIMENENLIERSAQLGELLLEQLKEELGEHP-LVGDIRGKGLLVGIELVNDKETKEPAD 391
Query: 191 ------VCIKMKDAGLV------TKPISNNIIRLSPALNITEQELREGLDIIINTI 234
V K+ GL+ T NN++ LSP L I+ +E+ I+ T+
Sbjct: 392 NDKVASVVAACKEKGLIIGKNGDTVAGYNNVLTLSPPLVISSEEIA----FIVGTL 443
>gnl|CDD|179636 PRK03715, argD, acetylornithine transaminase protein; Provisional.
Length = 395
Score = 149 bits (379), Expect = 3e-43
Identities = 73/208 (35%), Positives = 112/208 (53%), Gaps = 3/208 (1%)
Query: 19 NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHY 78
A M+EP+QGE G + +++++RAL Q+ +L I DEVQTG GRTG L A
Sbjct: 177 TDKTVAVMLEPVQGEGGVIPATREFMQQLRALTKQHGLLLIVDEVQTGCGRTGTLFAYEL 236
Query: 79 EDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVI 138
+ PDI+ LGK + GG+ P++A+LA EV G G TY GNPL + + + +
Sbjct: 237 SGIEPDIMTLGKGIGGGV-PLAALLAKAEV-AVFEAGDQGGTYNGNPLMTAVGVAVISQL 294
Query: 139 LEENMIENAYKMGEIFRSELRSRLSPDIVPVVRGKGLLNAIVLDKSIL-EVYDVCIKMKD 197
L +E GE + +L + RG+GLL A++L K I ++ + M+
Sbjct: 295 LAPGFLEGVRARGEYLKEKLLELSEERGLEGERGEGLLRALLLGKDIGPQIVEKARDMQP 354
Query: 198 AGLVTKPISNNIIRLSPALNITEQELRE 225
GL+ N++R PALN+T +E+ +
Sbjct: 355 DGLLLNAPRPNLLRFMPALNVTTEEIDQ 382
>gnl|CDD|235687 PRK06062, PRK06062, hypothetical protein; Provisional.
Length = 451
Score = 150 bits (380), Expect = 7e-43
Identities = 82/234 (35%), Positives = 119/234 (50%), Gaps = 32/234 (13%)
Query: 21 NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYED 80
I A ++E + G AG +VP GYL VR LC ++ ++ IADEV G GRTGK AI +
Sbjct: 214 TIAAILLESVPGTAGILVPPPGYLAGVRELCDRHGIVLIADEVMAGFGRTGKWFAIEHFG 273
Query: 81 VRPDIVILGKALSGGLYPISAVLADDEVMGT----LVPGTHGSTYGGNPLACKLAMTALD 136
V PD++ K ++ G P+ V + + T PG G TY G+PLAC A+ ++
Sbjct: 274 VVPDLITFAKGVNSGYVPLGGVAISEAIAATFADRPYPG--GLTYSGHPLACAAAVATIN 331
Query: 137 VILEENMIENAYKMG-EIFRSELRSRLSPD--IVPVVRGKGLLNAIVL------------ 181
+ EE ++ENA ++G E+ LR L+ V VRG G+ A+ L
Sbjct: 332 AMEEEGIVENAARIGAEVLGPGLR-ELAERHPSVGEVRGLGVFWALELVADRETREPLAP 390
Query: 182 ----DKSILEVYDVCIKMKDAGLVTKPISN-NIIRLSPALNITEQELREGLDII 230
++ V C K+ GL+ P N N I + P +TE E+REGL I+
Sbjct: 391 YGASSAAMAAVKAAC---KERGLL--PFVNGNRIHVVPPCTVTEDEVREGLAIL 439
>gnl|CDD|181493 PRK08593, PRK08593, 4-aminobutyrate aminotransferase; Provisional.
Length = 445
Score = 149 bits (378), Expect = 1e-42
Identities = 72/224 (32%), Positives = 123/224 (54%), Gaps = 9/224 (4%)
Query: 26 MVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDI 85
++E IQG+ G + P GY + + C ++ +LF D++Q GLGRTGK +I + ++ PD+
Sbjct: 212 VIETIQGDGGLLEPVPGYFEALYKFCREHGILFAVDDIQQGLGRTGKWSSISHFNITPDL 271
Query: 86 VILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIE 145
+ GK+L+GG+ P+SA++ E+M +L H T G NP++C A+ +D+I +E++++
Sbjct: 272 MSFGKSLAGGM-PMSAIVGRKEIMESLEAPAHLFTTGANPVSCAAALATIDMIEDESLLQ 330
Query: 146 NAYKMGEIFRSELRSRLSP-DIVPVVRGKGLLNAI--VLDKSILE-----VYDVCIKMKD 197
+ + GE R +S + V VRG GL I V DK + +C +
Sbjct: 331 RSAEKGEYARKRFDQWVSKYNFVGDVRGYGLSIGIDIVSDKKLKTRDNEAALKICNYCFE 390
Query: 198 AGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINTMAAKK 241
G+V ++ N++R P L IT ++L L+ I + A K
Sbjct: 391 HGVVIIAVAGNVLRFQPPLVITYEQLDTALNTIEQAFTALEAGK 434
>gnl|CDD|180401 PRK06105, PRK06105, aminotransferase; Provisional.
Length = 460
Score = 148 bits (375), Expect = 5e-42
Identities = 71/236 (30%), Positives = 125/236 (52%), Gaps = 18/236 (7%)
Query: 22 ICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDV 81
I AF+ EP+ G G +VP Y +K++A+ +Y++L +ADEV G GRTG + +
Sbjct: 219 IAAFIGEPVMGAGGVIVPPKTYWEKIQAVLRKYDILLVADEVICGFGRTGNMFGCETFGI 278
Query: 82 RPDIVILGKALSGGLYPISAVLADDEVMGTLVP-----GT--HGSTYGGNPLACKLAMTA 134
+PDI+++ K LS P+SAVL +++V + GT HG T G+P+A +A+
Sbjct: 279 KPDILVMSKQLSSSYQPLSAVLMNEKVYDPIADESGKIGTFGHGFTASGHPVAAAVALEN 338
Query: 135 LDVILEENMIENAYKMGEIFRSELRSRLSPDIVPVVRGKGLLNAI--VLDKSILEVYD-- 190
L +I E +++ NA + G ++ LR+ +V VRG GL+ A+ V DK+ ++
Sbjct: 339 LAIIEERDLVGNAAERGARLQARLRALADHPLVGEVRGVGLIAAVELVADKATKTPFEPP 398
Query: 191 ------VCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINTMAAK 240
+ G++++ + + + P L IT ++ E +D ++ +AA
Sbjct: 399 GKVGARANAAAHEHGVISRAMGDT-LAFCPPLIITAAQVDEMVDRFGRALDDVAAW 453
>gnl|CDD|180994 PRK07480, PRK07480, putative aminotransferase; Validated.
Length = 456
Score = 143 bits (363), Expect = 2e-40
Identities = 72/228 (31%), Positives = 117/228 (51%), Gaps = 22/228 (9%)
Query: 21 NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYED 80
N+ AF+ EPIQG G ++P Y +++ +C +Y++L +ADEV G GRTG+ +
Sbjct: 219 NVAAFIGEPIQGAGGVIIPPATYWPEIQRICRKYDILLVADEVICGFGRTGEWFGSQHFG 278
Query: 81 VRPDIVILGKALSGGLYPISAVLADDEVMGTLVPG----THGSTYGGNPLACKLAMTALD 136
++PD++ + K L+ G P+ AV D V L+ HG TY G+P+A +A+ L
Sbjct: 279 IKPDLMTIAKGLTSGYIPMGAVGVGDRVAEVLIEEGGEFNHGFTYSGHPVAAAVALANLR 338
Query: 137 VILEENMIENAY-KMGEIFRSELRSRLSPDIVPVVRGKGLLNAIVL--DKSILEVY---- 189
++ +E ++E G + LR +V VRG GL+ AI L DK+ E +
Sbjct: 339 ILRDEGIVERVRDDTGPYLQKRLRELADHPLVGEVRGVGLVGAIELVKDKATRERFEAGG 398
Query: 190 -------DVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDII 230
D C GL+ + + + +I +SP L IT E+ E ++
Sbjct: 399 GVGTICRDHCFA---NGLIMRAVGDRMI-ISPPLVITHAEIDELVEKA 442
>gnl|CDD|236149 PRK08088, PRK08088, 4-aminobutyrate aminotransferase; Validated.
Length = 425
Score = 142 bits (360), Expect = 3e-40
Identities = 77/221 (34%), Positives = 123/221 (55%), Gaps = 13/221 (5%)
Query: 21 NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYED 80
+I A ++EP+QGE G +++++RALC ++ ++ IADEVQTG GRTG L A+
Sbjct: 199 DIAAIIIEPVQGEGGFYAASPAFMQRLRALCDEHGIMLIADEVQTGAGRTGTLFAMEQMG 258
Query: 81 VRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILE 140
V D+ K+++GG +P++ V EVM + PG G TY GNP+AC A+ L V +
Sbjct: 259 VAADLTTFAKSIAGG-FPLAGVTGRAEVMDAIAPGGLGGTYAGNPIACAAALAVLKVFEQ 317
Query: 141 ENMIENAYKMGEIFRSELRSRLS--PDIVPVVRGKGLLNAIVL------DKSILE-VYDV 191
EN+++ A +GE + L + P+I VRG G + AI L K + +
Sbjct: 318 ENLLQKANALGEKLKDGLLAIAEKHPEIGD-VRGLGAMIAIELFEDGDHSKPNAKLTAQI 376
Query: 192 CIKMKDAGLVTKPISN--NIIRLSPALNITEQELREGLDII 230
+ +D GL+ N++R+ L I + ++R+GL+II
Sbjct: 377 VARARDKGLILLSCGPYYNVLRILVPLTIEDAQIRQGLEII 417
>gnl|CDD|180390 PRK06082, PRK06082, 4-aminobutyrate aminotransferase; Provisional.
Length = 459
Score = 139 bits (353), Expect = 7e-39
Identities = 72/220 (32%), Positives = 116/220 (52%), Gaps = 15/220 (6%)
Query: 22 ICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDV 81
I AF+ E ++ VP Y K+VR +C ++NVL I DE+ G+GRTG+ +
Sbjct: 230 IGAFIAEAVRN-TDVQVPSKAYWKRVREICDKHNVLLIIDEIPNGMGRTGEWFTHQAYGI 288
Query: 82 RPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGS-TYGGNPLACKLAMTALDVILE 140
PDI+ +GK L GGL PI+A++ D+ T + G T+ +PL C A+ ++VI +
Sbjct: 289 EPDILCIGKGLGGGLVPIAAMITKDK-YNTAAQISLGHYTHEKSPLGCAAALATIEVIEQ 347
Query: 141 ENMIENAYKMGEIFR---SELRSRLSPDIVPVVRGKGLLNAIVL-------DKSILEVYD 190
E ++E + R E++++ ++ VRG GLL + L +++ E
Sbjct: 348 EGLLEKVKADSQFMRERLLEMKAKYP--LIGDVRGIGLLWGVELVTDRHTKERAYDEAEA 405
Query: 191 VCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDII 230
V + + GL K N+I+LSP L IT +EL + L I+
Sbjct: 406 VLYRCLNNGLSFKVSQGNVIQLSPPLIITREELTQALAIL 445
>gnl|CDD|235913 PRK07036, PRK07036, hypothetical protein; Provisional.
Length = 466
Score = 138 bits (349), Expect = 3e-38
Identities = 77/241 (31%), Positives = 124/241 (51%), Gaps = 23/241 (9%)
Query: 21 NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIH-YE 79
NI AF+ EPI G G +VP GY ++R +C +Y++L+I+DEV TG GR G A
Sbjct: 220 NIAAFIAEPILGSGGVIVPPPGYHARMREICRRYDILYISDEVVTGFGRLGHFFASEAVF 279
Query: 80 DVRPDIVILGKALSGGLYPISAVLADDEVMGTL----VPG---THGSTYGGNPLACKLAM 132
++PDI+ K L+ G P+ AV+ + ++ + G THG TY G+P+AC A+
Sbjct: 280 GIQPDIITFAKGLTSGYQPLGAVIISERLLDVISGPNAKGNVFTHGFTYSGHPVACAAAL 339
Query: 133 TALDVILEENMIENAYKMGEIFRSELRSRLSPDIVPVVRGKGLLNAI--VLDKSILEVYD 190
++++ E + E+ ++G F L S +V VRG L+ + V DK +
Sbjct: 340 KNIEIMEREGLCEHVREVGPYFEERLASLRELPLVGDVRGDHLMACVECVADKGSKALLP 399
Query: 191 VCI--------KMKDAGLVTKPISNNIIRLSPALNITEQELREGLDI----IINTINTMA 238
I ++ GL+ +P+ + + LSP L IT ++ E + I I T + +A
Sbjct: 400 EDIAIGQRIDRHCQERGLLVRPLEHLCV-LSPPLIITRAQIDEIVAILRAAIEETADELA 458
Query: 239 A 239
A
Sbjct: 459 A 459
>gnl|CDD|180690 PRK06777, PRK06777, 4-aminobutyrate aminotransferase; Provisional.
Length = 421
Score = 136 bits (345), Expect = 5e-38
Identities = 76/218 (34%), Positives = 119/218 (54%), Gaps = 10/218 (4%)
Query: 22 ICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDV 81
+ A ++EPIQGE G V ++ +R LC ++ +L IADEVQTG RTGKL A+ Y DV
Sbjct: 199 VAAILLEPIQGEGGFNVAPPEFMSALRTLCDEHGILLIADEVQTGFARTGKLFAMEYYDV 258
Query: 82 RPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEE 141
+PD++ + K+L GG PISAV+ EVM PG G TY GNPLA A+ LDVI EE
Sbjct: 259 KPDLITMAKSLGGG-MPISAVVGRAEVMDAPAPGGLGGTYAGNPLAVAAALAVLDVIAEE 317
Query: 142 NMIENAYKMGEIFRSEL-RSRLSPDIVPVVRGKGLLNAIVLD--KSILEVYDVCIKMKDA 198
+ + A +G L +++ S + +R +G + A+ + ++ + + +
Sbjct: 318 KLCQRALILGAHLVEVLEKAKASCPAIVDIRARGSMVAVEFNDPQTGKPSPEFTRQYQRQ 377
Query: 199 G------LVTKPISNNIIRLSPALNITEQELREGLDII 230
L++ + N+IR L I + + + L+I+
Sbjct: 378 ALEEGLLLLSCGVHGNVIRFLYPLTIPDAQFSKALNIL 415
>gnl|CDD|236224 PRK08297, PRK08297, L-lysine aminotransferase; Provisional.
Length = 443
Score = 136 bits (345), Expect = 7e-38
Identities = 78/238 (32%), Positives = 116/238 (48%), Gaps = 16/238 (6%)
Query: 10 KQVPAKLKSNP-NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLG 68
Q A + +P +I F+ EPIQGE G + +R LC +++ L I DEVQTG+G
Sbjct: 213 AQARAAFERHPHDIACFIAEPIQGEGGDNHFRPEFFAAMRELCDEHDALLIFDEVQTGVG 272
Query: 69 RTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLAD---DEVMGTL--VPGTHGSTYGG 123
TG A VRPDIV GK + ++A DEV + V ST+GG
Sbjct: 273 LTGTAWAYQQLGVRPDIVAFGKKTQ-----VCGIMAGRRVDEVEDNVFAVSSRINSTWGG 327
Query: 124 NPLACKLAMTALDVILEENMIENAYKMGEIFRSELRS--RLSPDIVPVVRGKGLLNAIVL 181
N + A L+VI E+ ++ENA + GE + L P +V VRG+GL+ A L
Sbjct: 328 NLVDMVRARRILEVIEEDGLVENAARQGEYLLARLEELAAEFPAVVSNVRGRGLMCAFDL 387
Query: 182 DKSILEVYD-VCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINTMA 238
+ D V ++ + G++ P IR PAL +T +E+ +D + + +A
Sbjct: 388 PTT--ADRDEVIRRLWEEGVLVLPCGERSIRFRPALTVTTEEIDAAIDALRRALPEVA 443
>gnl|CDD|101376 PRK04013, argD, acetylornithine/acetyl-lysine aminotransferase;
Provisional.
Length = 364
Score = 135 bits (340), Expect = 1e-37
Identities = 78/212 (36%), Positives = 112/212 (52%), Gaps = 17/212 (8%)
Query: 24 AFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRP 83
A + EPIQGE G V + ++K +R L L IADEVQ+GL RTGK LAI + V P
Sbjct: 165 AVIFEPIQGEGGIVPAKEEFVKTLRDLTEDVGALLIADEVQSGL-RTGKFLAIEHYKVEP 223
Query: 84 DIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENM 143
DIV +GK + G+ P+S L + +V G HGST+GGNPLACK L ++ E +
Sbjct: 224 DIVTMGKGIGNGV-PVSLTLTNFDVE----RGKHGSTFGGNPLACKAVAVTLRILRRERL 278
Query: 144 IENAYKMGEIFRSELRSRLSPDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTK 203
+E A E + + V RG+GL+ IVL K + + + ++++ G +
Sbjct: 279 VEKA--------GEKFIEIKGERVVTTRGRGLMIGIVLKKPVGKYVE---ELQNRGYLVH 327
Query: 204 PISNNIIRLSPALNITEQELREGLDIIINTIN 235
+IRL P L I++ + E I IN
Sbjct: 328 TAGQRVIRLLPPLIISKDTMEEAKSAIEGVIN 359
>gnl|CDD|235823 PRK06541, PRK06541, hypothetical protein; Provisional.
Length = 460
Score = 135 bits (341), Expect = 4e-37
Identities = 64/228 (28%), Positives = 109/228 (47%), Gaps = 19/228 (8%)
Query: 22 ICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDV 81
+ A +EP+Q G P GY ++VR +C +Y+VL ++DEV GR G++
Sbjct: 222 VAAVFLEPVQNAGGCFPPPPGYFERVREICDRYDVLLVSDEVICAFGRLGEMFGCERFGY 281
Query: 82 RPDIVILGKALSGGLYPISAVLADDEVMGTLVPGT----HGSTYGGNPLACKLAMTALDV 137
PDI+ K ++ G P+ A++A D + + G HG T+GG+P++ +A+ LD+
Sbjct: 282 VPDIITCAKGITSGYSPLGAMIASDRLFEPFLDGPTMFLHGYTFGGHPVSAAVALANLDI 341
Query: 138 ILEENMIENAYKMGEIFRSELRSRLSPDIVPVVRGKGLLNAI--VLDKSILEVYD----- 190
E ++++ FR+ L L IV VRG G I V DK+ E +
Sbjct: 342 FEREGLLDHVRDNEPAFRATLEKLLDLPIVGDVRGDGYFYGIELVKDKATKETFTDDESE 401
Query: 191 ------VCIKMKDAGLVTKPISNN--IIRLSPALNITEQELREGLDII 230
+ + +AGL + +++L+P L ++E E I+
Sbjct: 402 RLLRGFLSPALFEAGLYCRADDRGDPVVQLAPPLISGQEEFDEIEQIL 449
>gnl|CDD|168145 PRK05639, PRK05639, 4-aminobutyrate aminotransferase; Provisional.
Length = 457
Score = 131 bits (331), Expect = 7e-36
Identities = 79/228 (34%), Positives = 133/228 (58%), Gaps = 10/228 (4%)
Query: 22 ICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDV 81
+ A EPIQG+AG VVP + + K+++ L ++ +L + DEVQTG+GRTGK A + +V
Sbjct: 223 VAALFAEPIQGDAGIVVPPENFFKELKKLLDEHGILLVMDEVQTGIGRTGKWFASEWFEV 282
Query: 82 RPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEE 141
+PD++I GK ++ G+ +S V+ E+M L G+ T NP+ A L++I EE
Sbjct: 283 KPDLIIFGKGVASGM-GLSGVIGRKELM-DLTSGSALLTPAANPVISAAAEATLEIIEEE 340
Query: 142 NMIENAYKMGEIFRSELRS-RLSPDIVPVVRGKGLLNAIVL----DKSILEVY-DVCIKM 195
N+++NA K+GE + L + S +++ VRGKGL+ + + K E+ +C +
Sbjct: 341 NLLKNALKVGEFIKKRLLEMKESFEVIGDVRGKGLMIGVEIVKENGKPDPELTGKICWRA 400
Query: 196 KDAGLV--TKPISNNIIRLSPALNITEQELREGLDIIINTINTMAAKK 241
+ GL+ + + N+IR++P L IT++ +GL+I+ I A K
Sbjct: 401 FELGLILPSYGMFGNVIRITPPLVITKEIAEKGLEIMERAIKDALAGK 448
>gnl|CDD|215405 PLN02760, PLN02760, 4-aminobutyrate:pyruvate transaminase.
Length = 504
Score = 132 bits (333), Expect = 9e-36
Identities = 73/231 (31%), Positives = 120/231 (51%), Gaps = 25/231 (10%)
Query: 16 LKSNP-NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLL 74
LK P I AF+ EP+ G G + P Y +K++A+ +Y++LFIADEV GR G +
Sbjct: 254 LKEGPETIAAFIAEPVMGAGGVIPPPATYFEKIQAVLKKYDILFIADEVICAFGRLGTMF 313
Query: 75 AIHYEDVRPDIVILGKALSGGLYPISAVLADDEV----------MGTLVPGTHGSTYGGN 124
+++PD+V L KALS PI AVL E+ +G+ HG TY G+
Sbjct: 314 GCDKYNIKPDLVSLAKALSSAYMPIGAVLVSPEISDVIHSQSNKLGSF---AHGFTYSGH 370
Query: 125 PLACKLAMTALDVILEENMIENAYKMGEIFRSELRSRLSPDIVPVVRGKGLLNAI--VLD 182
P++C +A+ AL + E N+ E+ K+ F+ +++ I+ +RG GL+ V +
Sbjct: 371 PVSCAVALEALKIYKERNIPEHVNKIAPRFQDGIKAFSGSPIIGEIRGTGLILGTEFVDN 430
Query: 183 KSILEVYDV--------CIKMKDAGLVTKPISNNIIRLSPALNITEQELRE 225
KS + + + K G++ + ++ + I +SP L IT +E+ E
Sbjct: 431 KSPNDPFPAEWGVGAYFGAECKKRGMLVR-VAGDNIMMSPPLIITPEEVDE 480
>gnl|CDD|180441 PRK06173, PRK06173, adenosylmethionine--8-amino-7-oxononanoate
transaminase; Provisional.
Length = 429
Score = 127 bits (322), Expect = 1e-34
Identities = 64/164 (39%), Positives = 89/164 (54%), Gaps = 9/164 (5%)
Query: 22 ICAFMVEPI-QGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYED 80
I A ++EP+ QG G YL K R LC QY VL I DE+ TG GRTGKL A+ +
Sbjct: 207 IAALILEPVVQGAGGMYFYSPTYLVKARELCDQYGVLLIFDEIATGFGRTGKLFALEHAG 266
Query: 81 VRPDIVILGKALSGGLYPISAVLADDEVMGTLVPG-----THGSTYGGNPLACKLAMTAL 135
V PDI+ +GKAL+GG +SA + + + T+ G HG T+ NPLAC +A ++
Sbjct: 267 VVPDIMCIGKALTGGYLTLSATITTEAIAQTICSGEAKCFMHGPTFMANPLACAIAAESI 326
Query: 136 DVILEENMIENAYKMGEIFRSELRSRLSPDIVPVVRGKGLLNAI 179
++LE +N ++ + EL D V VR +L AI
Sbjct: 327 RLLLESPWQQNIQRIEAQLKQELAPAAEFDSVAEVR---VLGAI 367
>gnl|CDD|181189 PRK07986, PRK07986, adenosylmethionine--8-amino-7-oxononanoate
transaminase; Validated.
Length = 428
Score = 125 bits (315), Expect = 1e-33
Identities = 65/164 (39%), Positives = 89/164 (54%), Gaps = 9/164 (5%)
Query: 22 ICAFMVEPI-QGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYED 80
I A ++EPI QG G + +LK+VR LC + +L IADE+ TG GRTGKL A +
Sbjct: 205 IAAVILEPIVQGAGGMRIYHPEWLKRVRKLCDREGILLIADEIATGFGRTGKLFACEHAG 264
Query: 81 VRPDIVILGKALSGGLYPISAVLADDEVMGTLVPG-----THGSTYGGNPLACKLAMTAL 135
+ PDI+ LGKAL+GG +SA L EV T+ G HG T+ GNPLAC +A +L
Sbjct: 265 IAPDILCLGKALTGGTMTLSATLTTREVAETISNGEAGCFMHGPTFMGNPLACAVANASL 324
Query: 136 DVILEENMIENAYKMGEIFRSELRSRLSPDIVPVVRGKGLLNAI 179
++ + + + R EL +V VR +L AI
Sbjct: 325 SLLESGDWQQQVAAIEAQLREELAPLRDAPMVADVR---VLGAI 365
>gnl|CDD|236026 PRK07482, PRK07482, hypothetical protein; Provisional.
Length = 461
Score = 124 bits (314), Expect = 2e-33
Identities = 70/238 (29%), Positives = 122/238 (51%), Gaps = 19/238 (7%)
Query: 21 NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYED 80
I AF+ EP+ G G V P GY ++A+ +Y++L IADEV TG GR G + +
Sbjct: 220 TIAAFIAEPVLGTGGIVPPPAGYWPAIQAVLKKYDILLIADEVVTGFGRLGSMFGSDHYG 279
Query: 81 VRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGT-------HGSTYGGNPLACKLAMT 133
+ PD++ + K L+ P+S + ++V L G+ HG TY G+P+ A+
Sbjct: 280 IEPDLITVAKGLTSAYAPLSGSIVGEKVWDVLEQGSDEHGAIGHGWTYSGHPICAAAALA 339
Query: 134 ALDVILEENMIENAYKMGEIFRSELRSRLSPD-IVPVVRGKGLLNAI--VLDKSILEVYD 190
LD++ EN++ NA ++G FR+ LR+ +V VRG G+L A+ V D+ +D
Sbjct: 340 NLDILERENLVGNAAEVGAYFRARLRAAFGDHPLVGEVRGVGMLAAVEFVADRDDRTPFD 399
Query: 191 VCIK--------MKDAGLVTKPISN-NIIRLSPALNITEQELREGLDIIINTINTMAA 239
+K + G++ + + + +I+ +P L +T E E + I + ++ +
Sbjct: 400 PALKIGPQVSAAALERGVIARAMPHGDILGFAPPLVLTRAEADEIVAIAKDAVDEVLG 457
>gnl|CDD|236437 PRK09264, PRK09264, diaminobutyrate--2-oxoglutarate
aminotransferase; Validated.
Length = 425
Score = 121 bits (305), Expect = 4e-32
Identities = 75/229 (32%), Positives = 117/229 (51%), Gaps = 17/229 (7%)
Query: 24 AFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRP 83
A +VE +QGE G V +L+++ LC ++++L I D++Q G GRTG + + P
Sbjct: 201 AVIVETVQGEGGINVASAEWLQRLAKLCRKHDILLIVDDIQAGCGRTGTFFSFERAGITP 260
Query: 84 DIVILGKALSG-GLYPISAVLADDE--VMGTLVPGTHGSTYGGNPLACKLAMTALDVILE 140
DIV L K++SG GL P++ VL E V PG H T+ GN LA A AL+
Sbjct: 261 DIVTLSKSISGYGL-PMALVLIKPELDVWK---PGEHNGTFRGNNLAFVTATAALEEYWS 316
Query: 141 ENMIENAYK-MGEIFRSELRSRLS--PDIVPVVRGKGLLNAIVLDKSIL--EVYDVCIKM 195
++ E K GE+ R L + P + VRG+G++ I L ++
Sbjct: 317 DDAFEKEVKAKGELVRERLEEIAAKYPGLGAEVRGRGMMQGIDFGDGELAGKIAAEAF-- 374
Query: 196 KDAGLV--TKPISNNIIRLSPALNITEQELREGLDIIINTINTMAAKKT 242
+ GL+ T + +++L P L I E+EL EGLDI+ + + A++
Sbjct: 375 -ENGLIIETSGPEDEVVKLLPPLTIDEEELEEGLDILEEAVAEVLAEEE 422
>gnl|CDD|132295 TIGR03251, LAT_fam, L-lysine 6-transaminase. Characterized members
of this protein family are L-lysine 6-transaminase, also
called lysine epsilon-aminotransferase (LAT). The
immediate product of the reaction of this enzyme on
lysine, 2-aminoadipate 6-semialdehyde, becomes
1-piperideine 6-carboxylate, or P6C. This product may be
converted subsequently to pipecolate or
alpha-aminoadipate, lysine catabolites that may be
precursors of certain seconary metabolites.
Length = 431
Score = 121 bits (304), Expect = 5e-32
Identities = 75/229 (32%), Positives = 110/229 (48%), Gaps = 16/229 (6%)
Query: 11 QVPAKLKSNP-NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGR 69
Q A P +I F+ EPIQGE G +L+ +RALC +++ L I DEVQTG+G
Sbjct: 207 QARAAFAERPHDIACFIAEPIQGEGGDNHFRPEFLRAMRALCDEHDALLIFDEVQTGVGL 266
Query: 70 TGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLAD---DEVMGTL--VPGTHGSTYGGN 124
TG A V+PDIV GK + ++A DEV + VP ST+GGN
Sbjct: 267 TGTAWAYQQLGVQPDIVAFGKKTQ-----VCGIMAGRRVDEVADNVFAVPSRLNSTWGGN 321
Query: 125 PLACKLAMTALDVILEENMIENAYKMGEIFRSELR--SRLSPDIVPVVRGKGLLNAIVLD 182
+ A L++I EE +++NA G + L + P +V RG+GL+ A L
Sbjct: 322 LVDMVRATRILEIIEEERLVDNARVQGAHLLARLHELAAEFPHLVSNPRGRGLMCAFDLP 381
Query: 183 KSILEVYDVCIK-MKDAGLVTKPISNNIIRLSPALNITEQELREGLDII 230
+ D I+ + G++ IR P L +T +E+ +D I
Sbjct: 382 ST--ADRDEVIRQLYREGVLLLGCGERSIRFRPPLTVTREEIDAAIDAI 428
>gnl|CDD|180800 PRK07030, PRK07030, adenosylmethionine--8-amino-7-oxononanoate
transaminase; Provisional.
Length = 466
Score = 120 bits (302), Expect = 1e-31
Identities = 79/236 (33%), Positives = 113/236 (47%), Gaps = 32/236 (13%)
Query: 22 ICAFMVEP-IQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYED 80
I A +VEP IQG G + YLK +R C +Y V I DE+ G GRTG + A
Sbjct: 215 IAAVIVEPLIQGAGGMRMYHPVYLKLLREACDRYGVHLIHDEIAVGFGRTGTMFACEQAG 274
Query: 81 VRPDIVILGKALSGGLYPISAVLADDEV-------MGTLVPGTHGSTYGGNPLACKLAMT 133
+RPD + L KAL+GG P++AVL D V TL H +Y GNPLAC A+
Sbjct: 275 IRPDFLCLSKALTGGYLPLAAVLTTDTVYQAFYDDYPTLRAFLHSHSYTGNPLACAAALA 334
Query: 134 ALDVILEENMIENAYKMGEIFRSELRSRLSPDIVPVVRGKGLLNAI--VLDKSI------ 185
LD+ ++N+IEN + V VR G++ AI V DK+
Sbjct: 335 TLDIFEQDNVIENNRALARRMAEATAHLADHPHVAEVRQTGMILAIEMVQDKASKTPYPW 394
Query: 186 -----LEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELR-------EGLDI 229
L+VY ++ G + +P+ + + L P + IT +++ EG+DI
Sbjct: 395 QERRGLKVYQHALE---RGALLRPLGSVVYFLPPYV-ITPEQIDFLAEVASEGIDI 446
>gnl|CDD|235892 PRK06938, PRK06938, diaminobutyrate--2-oxoglutarate
aminotransferase; Provisional.
Length = 464
Score = 119 bits (300), Expect = 3e-31
Identities = 55/155 (35%), Positives = 85/155 (54%), Gaps = 5/155 (3%)
Query: 24 AFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRP 83
A ++E +QGE G + +L+ +R + + + I DE+Q+G GRTGK+ A + + P
Sbjct: 234 AVILEVVQGEGGVIPAPIEWLRGLRRITEEAGIPLIVDEIQSGFGRTGKMFAFEHAGIIP 293
Query: 84 DIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENM 143
D+V+L KA+ G L P++ V+ + + T PG H T+ GN +A L I E +
Sbjct: 294 DVVVLSKAIGGSL-PLAVVVYREW-LDTWQPGAHAGTFRGNQMAMAAGSATLRYIKEHRL 351
Query: 144 IENAYKMGEIFRSELRS--RLSPDIVPVVRGKGLL 176
E+A MGE R LR R P + VRG+GL+
Sbjct: 352 AEHAAAMGERLREHLRQLQRDYPQLGD-VRGRGLM 385
>gnl|CDD|235889 PRK06931, PRK06931, diaminobutyrate--2-oxoglutarate
aminotransferase; Provisional.
Length = 459
Score = 117 bits (294), Expect = 2e-30
Identities = 75/230 (32%), Positives = 115/230 (50%), Gaps = 36/230 (15%)
Query: 24 AFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRP 83
A ++E IQGE G +L+K+R + ++ +L I DEVQ G RTGK+ A + + P
Sbjct: 228 AVILEAIQGEGGVNPAPVEWLQKIREVTQKHGILLIVDEVQAGFARTGKMFAFEHAGIEP 287
Query: 84 DIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENM 143
DI+++ KA+ GGL P+ AVL + PG H T+ GN LA +T L ++ EEN+
Sbjct: 288 DIIVMSKAVGGGL-PL-AVLGIKKEFDAWQPGGHTGTFRGNQLAMATGLTTLKILKEENL 345
Query: 144 IENAYKMGEIFRSELRSRLSPDIVPV---VRGKGLLNAIVLDKSILEVYD---------- 190
+NA + GE +++L L P VRG+GL+ I E+ D
Sbjct: 346 AQNAAERGEWLKAQLA-ELQKRY-PCIGNVRGRGLMIGI-------EIVDERQPADAMGS 396
Query: 191 --------VCIKMK--DAGLVTKP--ISNNIIRLSPALNITEQELREGLD 228
I+ + GL+ + + N++RL P L IT+ E E +D
Sbjct: 397 YPADGELAAAIQKACFENGLLLERGGRNGNVVRLLPPLLITQAECEEFID 446
>gnl|CDD|129792 TIGR00709, dat, 2,4-diaminobutyrate 4-transaminases. This family
consists of L-diaminobutyric acid transaminases. This
general designation covers both 2.6.1.76
(diaminobutyrate-2-oxoglutarate transaminase, which uses
glutamate as the amino donor in DABA biosynthesis), and
2.6.1.46 (diaminobutyrate--pyruvate transaminase, which
uses alanine as the amino donor). Most members with
known function are 2.6.1.76, and at least some
annotations as 2.6.1.46 in current databases at time of
model revision are incorrect. A distinct branch of this
family contains examples of 2.6.1.76 nearly all of which
are involved in ectoine biosynthesis. A related enzyme
is 4-aminobutyrate aminotransferase (EC 2.6.1.19), also
called GABA transaminase. These enzymes all are
pyridoxal phosphate-containing class III
aminotransferase [Central intermediary metabolism,
Other].
Length = 442
Score = 116 bits (291), Expect = 3e-30
Identities = 69/228 (30%), Positives = 108/228 (47%), Gaps = 20/228 (8%)
Query: 24 AFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRP 83
A ++E IQGE G V +L+K+R + ++++ I DEVQ G GR+G + A + + P
Sbjct: 209 AVILEAIQGEGGVVAAPSEWLQKIREVTRKHDIKLILDEVQAGFGRSGTMFAFEHAGIEP 268
Query: 84 DIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENM 143
D V++ KA+ GGL P+ AVL P H T+ GN LA AL+ ++N+
Sbjct: 269 DFVVMSKAVGGGL-PL-AVLLIAPEFDAWQPAGHTGTFRGNQLAMVTGTEALNYWKDDNL 326
Query: 144 IENAYKMGEIFRSELR--SRLSPDIVPVVRGKGLLNAIVL-----DKSILEVYDVCIKMK 196
+NA + GE S L + P I VRG+GL+ I++ K Y ++
Sbjct: 327 AQNAQERGERITSFLDDMIKEHPCI-GNVRGRGLMQGIMIVDERQSKDATGAYPRDCELA 385
Query: 197 DA--------GLV--TKPISNNIIRLSPALNITEQELREGLDIIINTI 234
A GL+ T + RL + I ++E EG+ +
Sbjct: 386 AAIQGACFENGLLLETGGREGEVFRLLCPITIDQEECEEGISRFKQAV 433
>gnl|CDD|233853 TIGR02407, ectoine_ectB, diaminobutyrate--2-oxoglutarate
aminotransferase. Members of this family of class III
pyridoxal-phosphate-dependent aminotransferases are
diaminobutyrate--2-oxoglutarate aminotransferase (EC
2.6.1.76) that catalyze the first step in ectoine
biosynthesis from L-aspartate beta-semialdehyde. This
family is readily separated phylogenetically from
enzymes with the same substrate and product but involved
in other process such as siderophore (SP|Q9Z3R2) or
1,3-diaminopropane (SP|P44951) biosynthesis. The family
TIGR00709 previously included both groups but has now
been revised to exclude the ectoine biosynthesis
proteins of this family. Ectoine is a compatible solute
particularly effective in conferring salt tolerance
[Cellular processes, Adaptations to atypical
conditions].
Length = 412
Score = 115 bits (290), Expect = 4e-30
Identities = 69/214 (32%), Positives = 114/214 (53%), Gaps = 11/214 (5%)
Query: 24 AFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRP 83
A ++E +QGE G V D +L+++ LC ++++L I D++Q G GRTG + + P
Sbjct: 197 AVILETVQGEGGINVASDEWLQRLEKLCRRHDILLIVDDIQAGCGRTGTFFSFEPAGIEP 256
Query: 84 DIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENM 143
DIV L K++SG P++ L E + PG H T+ GN LA A AL+ ++
Sbjct: 257 DIVCLSKSISGYGLPLALTLIKPE-LDVWKPGEHNGTFRGNNLAFVTATAALEYYWSDDA 315
Query: 144 IENA-YKMGEIFRSELRSRLS--PDIVPVVRGKGLLNAIVLDKSIL--EVYDVCIKMKDA 198
E A + EI + L ++ P+++ VRG+GL+ I L ++ +
Sbjct: 316 FEKAVQRKSEIIQERLDRIVAEYPELIKQVRGRGLMQGIECGDGDLAGKIAKAAF---EN 372
Query: 199 GLV--TKPISNNIIRLSPALNITEQELREGLDII 230
GL+ T ++ +I+L P L I E+ L++GLDI+
Sbjct: 373 GLIIETSGPNDEVIKLLPPLTIDEETLQQGLDIL 406
>gnl|CDD|182078 PRK09792, PRK09792, 4-aminobutyrate transaminase; Provisional.
Length = 421
Score = 112 bits (280), Expect = 9e-29
Identities = 62/160 (38%), Positives = 95/160 (59%), Gaps = 6/160 (3%)
Query: 22 ICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAI-HYED 80
+ A + EP+QGE G V + +R LC ++ ++ IADEVQ+G RTGKL A+ HY D
Sbjct: 199 VAAIIFEPVQGEGGFNVAPKELVAAIRRLCDEHGIVMIADEVQSGFARTGKLFAMDHYAD 258
Query: 81 VRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILE 140
+PD++ + K+L+GG+ P+S V+ + +M PG G TY GNPLA A L++I +
Sbjct: 259 -KPDLMTMAKSLAGGM-PLSGVVGNANIMDAPAPGGLGGTYAGNPLAVAAAHAVLNIIDK 316
Query: 141 ENMIENAYKMGEIFRSELR--SRLSPDIVPVVRGKGLLNA 178
E++ E A ++G+ ++ L P I VRG G + A
Sbjct: 317 ESLCERANQLGQRLKNTLIDAKESVPAIA-AVRGLGSMIA 355
>gnl|CDD|180426 PRK06148, PRK06148, hypothetical protein; Provisional.
Length = 1013
Score = 113 bits (285), Expect = 9e-29
Identities = 60/172 (34%), Positives = 89/172 (51%), Gaps = 26/172 (15%)
Query: 24 AFMVEPIQGEAGAVVPDDGYLK----KVRA---LCSQYNVLFIADEVQTGLGRTGKLLAI 76
F+ E I AG + +GYL+ VRA +C IADEVQ G GR G
Sbjct: 787 FFIAESIPSVAGQIFLPEGYLREVYAMVRAAGGVC-------IADEVQVGFGRVGS---- 835
Query: 77 HY-----EDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGT-HGSTYGGNPLACKL 130
H+ + V PDIV +GK + G +P+ AV+ E+ + G + +T+GGNP++C +
Sbjct: 836 HWWAFETQGVVPDIVTMGKPIGNG-HPMGAVVTTREIADSFDNGMEYFNTFGGNPVSCAI 894
Query: 131 AMTALDVILEENMIENAYKMGEIFRSELRSRLSP-DIVPVVRGKGLLNAIVL 181
+ LD+I +E++ NA ++G + LR DI+ VRG GL I L
Sbjct: 895 GLAVLDIIEDEDLQRNALEIGNYLLAGLRELQDRFDIIGDVRGMGLFLGIEL 946
>gnl|CDD|235894 PRK06943, PRK06943, adenosylmethionine--8-amino-7-oxononanoate
transaminase; Provisional.
Length = 453
Score = 112 bits (281), Expect = 1e-28
Identities = 70/220 (31%), Positives = 102/220 (46%), Gaps = 41/220 (18%)
Query: 21 NICAFMVEP-IQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYE 79
I A +VEP +Q AG + D YL+ +RALC +Y V IADE+ G GRTG A
Sbjct: 221 KIAALIVEPLVQCAAGMAMHDPSYLRGLRALCDRYGVHLIADEIAVGCGRTGTFFACEQA 280
Query: 80 DVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGT------HGSTYGGNPLACKLAMT 133
V PD + L K +SGG P+S VL+ D + H +Y GNPLAC+ A+
Sbjct: 281 GVWPDFLCLSKGISGGYLPLSLVLSRDAIFAAFYDDDVTRGFLHSHSYTGNPLACRAALA 340
Query: 134 ALDVILEENMI-ENAYKMGEIFRSELRSRLSP----DIVPVVRGKGLLNAIVLDKSILEV 188
LD+ E++++ NA K + LR+ L+P V +R +G + A
Sbjct: 341 TLDLFAEDDVLARNARK-----SARLRAALAPLAAHPQVRHLRQRGTIFA---------- 385
Query: 189 YDVCIKMKDA--------------GLVTKPISNNIIRLSP 214
+DV + A L+ +PI + + P
Sbjct: 386 FDVALDGDAARTFSRRFFEAALERELLLRPIGTTVYLMPP 425
>gnl|CDD|180174 PRK05630, PRK05630, adenosylmethionine--8-amino-7-oxononanoate
transaminase; Provisional.
Length = 422
Score = 108 bits (270), Expect = 3e-27
Identities = 66/172 (38%), Positives = 93/172 (54%), Gaps = 18/172 (10%)
Query: 19 NPNICAFMVEPI-QGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIH 77
+ + A ++EPI QG G D ++ VR LC ++++L IADE+ TG GRTG+L A
Sbjct: 198 DETVAAIIIEPIVQGAGGMRFHDVALIEGVRTLCDKHDILLIADEIATGFGRTGELFATL 257
Query: 78 YEDVRPDIVILGKALSGGLYPISAVLADDEVM---------GTLVPGTHGSTYGGNPLAC 128
V PDI+ +GKAL+GG +A L D+V G L+ HG T+ NPLAC
Sbjct: 258 AAGVTPDIMCVGKALTGGFMSFAATLCTDKVAQLISTPNGGGALM---HGPTFMANPLAC 314
Query: 129 KLAMTALDVILEENMIENAYKMGEIFRSELRSRLSP-DIVPVVRGKGLLNAI 179
+A +L++I E M K E +EL + LSP +P V +L AI
Sbjct: 315 AVAHASLEII-ETGMWRKQVKRIE---AELIAGLSPLAHLPGVADVRVLGAI 362
>gnl|CDD|236336 PRK08742, PRK08742, adenosylmethionine--8-amino-7-oxononanoate
transaminase; Provisional.
Length = 472
Score = 108 bits (271), Expect = 3e-27
Identities = 52/143 (36%), Positives = 78/143 (54%), Gaps = 11/143 (7%)
Query: 22 ICAFMVEP-IQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYED 80
ICA ++EP +Q G + YL++ R LC + IADE+ TG GRTG L A
Sbjct: 237 ICALILEPRLQCAGGMRMHHPAYLRRARELCDAHGAFLIADEIATGFGRTGTLFACEQAG 296
Query: 81 VRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGT------HGSTYGGNPLACKLAMTA 134
V PD++ L K L+GG P+SAVLA ++ + + H +Y GNPLAC A+
Sbjct: 297 VMPDLLCLSKGLTGGFLPLSAVLATQQLYDAFLDDSRERAFLHSHSYTGNPLACAAALAT 356
Query: 135 LDVILEENMIEN----AYKMGEI 153
LD+ ++++I A +M ++
Sbjct: 357 LDIFADDDVIARNQPTAARMTQL 379
>gnl|CDD|223080 COG0001, HemL, Glutamate-1-semialdehyde aminotransferase [Coenzyme
metabolism].
Length = 432
Score = 105 bits (265), Expect = 2e-26
Identities = 53/145 (36%), Positives = 70/145 (48%), Gaps = 6/145 (4%)
Query: 22 ICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDV 81
I A +VEP+ G G V P+ G+L+ +R L ++ L I DEV TG R A Y V
Sbjct: 201 IAAVIVEPVAGNMGVVPPEPGFLEGLRELTEEHGALLIFDEVITGF-RVALGGAQGYYGV 259
Query: 82 RPDIVILGKALSGGLYPISAVLADDEVMGTLVPG---THGSTYGGNPLACKLAMTALDVI 138
PD+ LGK + GGL PI A E+M L P T GNPLA + L+ +
Sbjct: 260 EPDLTTLGKIIGGGL-PIGAFGGRAEIMEQLAPLGPVYQAGTLSGNPLAMAAGLATLEEL 318
Query: 139 -LEENMIENAYKMGEIFRSELRSRL 162
EE + E +GE LR+
Sbjct: 319 MTEEGVYERLDALGERLAEGLRAAA 343
>gnl|CDD|235716 PRK06149, PRK06149, hypothetical protein; Provisional.
Length = 972
Score = 104 bits (261), Expect = 1e-25
Identities = 70/229 (30%), Positives = 117/229 (51%), Gaps = 29/229 (12%)
Query: 24 AFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHY----- 78
F+ EP+ G AG + GYL++V A + IADEVQ G GR G HY
Sbjct: 747 GFICEPVYGNAGGIALPPGYLQQVYAAVRARGGVCIADEVQVGYGRLG-----HYFWGFE 801
Query: 79 -EDVRPDIVILGKALSGGLYPISAVLADDEVMGTL-VPGTHGSTYGGNPLACKLAMTALD 136
+ V PDI+ + K + G +P+ AV+ E+ L G S+ GG+P++C++ M LD
Sbjct: 802 QQGVVPDIITMAKGMGNG-HPLGAVITRREIAEALEAEGYFFSSTGGSPVSCRIGMAVLD 860
Query: 137 VILEENMIENAYKMGEIFRSELRSRLS--PDIVPVVRGKGLLNA--IVLDKSIL-----E 187
V+ EE + ENA ++G+ ++ L + P ++ V G GL +V D+ L E
Sbjct: 861 VLREEKLQENARRVGDHLKARLEALADRHP-LIGAVHGMGLYLGVELVRDRQTLEPATEE 919
Query: 188 VYDVCIKMKDAGLVTKPISN--NIIRLSPALNITEQELREGLDIIINTI 234
+C ++ + G++ +P + NI+++ P L + RE D ++ +
Sbjct: 920 TAAICDRLLELGVIMQPTGDHLNILKIKPPLCLD----RESADFFVDML 964
>gnl|CDD|171472 PRK12403, PRK12403, putative aminotransferase; Provisional.
Length = 460
Score = 96.9 bits (241), Expect = 4e-23
Identities = 51/165 (30%), Positives = 82/165 (49%), Gaps = 6/165 (3%)
Query: 21 NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYED 80
N+ F+ EP QG G + P + Y +++ +C QY+VL ADEV G GRTG+ A +
Sbjct: 222 NVAGFVAEPFQGAGGMIFPPESYWPEIQRICRQYDVLLCADEVIGGFGRTGEWFAHEHFG 281
Query: 81 VRPDIVILGKALSGGLYPISAVLADDEVMGTLVPG----THGSTYGGNPLACKLAMTALD 136
PD + + K L+ G P+ ++ + LV HG TY G+P+A +A+ L
Sbjct: 282 FEPDTLSIAKGLTSGYVPMGGLVLSKRIAEALVEQGGVFAHGLTYSGHPVAAAVAIANLK 341
Query: 137 VILEENMIENAYK-MGEIFRSELRSRL-SPDIVPVVRGKGLLNAI 179
+ +E ++ G + LR +V V+G GL+ A+
Sbjct: 342 ALRDEGVVTRVKDDTGPYLQRCLREVFGDHPLVGEVQGAGLVAAL 386
>gnl|CDD|234607 PRK00062, PRK00062, glutamate-1-semialdehyde aminotransferase;
Provisional.
Length = 426
Score = 94.7 bits (237), Expect = 2e-22
Identities = 52/154 (33%), Positives = 68/154 (44%), Gaps = 21/154 (13%)
Query: 21 NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYED 80
I A +VEP+ G G V P G+L+ +R LC ++ L I DEV TG R A Y
Sbjct: 197 EIAAVIVEPVAGNMGVVPPKPGFLEGLRELCDEHGALLIFDEVMTGF-RVALGGAQGYYG 255
Query: 81 VRPDIVILGKALSGGLYPISAVLADDEVMGTLVP-------GTHGSTYGGNPLACKLAMT 133
V PD+ LGK + GGL P+ A E+M L P G T GNP LAM
Sbjct: 256 VTPDLTTLGKIIGGGL-PVGAFGGRREIMEQLAPLGPVYQAG----TLSGNP----LAMA 306
Query: 134 A----LDVILEENMIENAYKMGEIFRSELRSRLS 163
A L ++ E E + + L+
Sbjct: 307 AGLATLKLLKEPGFYEELEALTKRLAEGLKEAAK 340
>gnl|CDD|233100 TIGR00713, hemL, glutamate-1-semialdehyde-2,1-aminomutase. This
enzyme, glutamate-1-semialdehyde-2,1-aminomutase
(glutamate-1-semialdehyde aminotransferase, GSA
aminotransferase), contains a pyridoxal phosphate
attached at a Lys residue at position 283 of the seed
alignment. It is in the family of class III
aminotransferases [Biosynthesis of cofactors, prosthetic
groups, and carriers, Heme, porphyrin, and cobalamin].
Length = 423
Score = 92.8 bits (231), Expect = 7e-22
Identities = 51/154 (33%), Positives = 68/154 (44%), Gaps = 5/154 (3%)
Query: 20 PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYE 79
I +VEP+ G G V P +L +RAL +Y L I DEV TG R A Y
Sbjct: 194 EEIAGVIVEPVAGNMGVVPPKPEFLAGLRALTEEYGSLLIFDEVMTGF-RVALGGAQEYF 252
Query: 80 DVRPDIVILGKALSGGLYPISAVLADDEVMGTLVP-GT--HGSTYGGNPLACKLAMTALD 136
V PD+ LGK + GGL P+ A E+M L P G T GNPLA + L
Sbjct: 253 GVEPDLTTLGKIIGGGL-PVGAFGGRREIMERLAPEGPVYQAGTLSGNPLAMAAGLATLK 311
Query: 137 VILEENMIENAYKMGEIFRSELRSRLSPDIVPVV 170
++ EE + ++ + L L +P
Sbjct: 312 LLDEEGVYTELDELAKRLAEGLSEVLEDTGIPHT 345
>gnl|CDD|129782 TIGR00699, GABAtrns_euk, 4-aminobutyrate aminotransferase,
eukaryotic type. This enzyme is a class III
pyridoxal-phosphate-dependent aminotransferase. This
model describes known eukaryotic examples of the enzyme.
The degree of sequence difference between this set and
known bacterial examples is greater than the distance
between either set the most similar enzyme with distinct
function, and so separate models are built for
prokaryotic and eukaryotic sets. Alternate names include
GABA transaminase, gamma-amino-N-butyrate transaminase,
and beta-alanine--oxoglutarate aminotransferase [Central
intermediary metabolism, Other].
Length = 464
Score = 85.6 bits (212), Expect = 3e-19
Identities = 58/219 (26%), Positives = 95/219 (43%), Gaps = 16/219 (7%)
Query: 22 ICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDV 81
+ A +VEPIQ E G + +K+R + ++NV FI DEVQTG+G TGK A + ++
Sbjct: 252 VAAIIVEPIQSEGGDNHASPDFFRKLRDITKKHNVAFIVDEVQTGVGATGKFWAHEHWNL 311
Query: 82 R--PDIVILG-KALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVI 138
PD+V K + G + D P +T+ G+P + + I
Sbjct: 312 DDPPDMVTFSKKFQTAGYF------FHDPAFRPNKPYRQFNTWMGDPSRALILREIIQEI 365
Query: 139 LEENMIENAYKMGEIFRSELR--SRLSPDIVPVVRGKGLLNAIVLDKSILEVYD-VCIKM 195
++++EN +G+ + L + P+ + +RGKG I D D + K
Sbjct: 366 KRKDLLENVAHVGDYLYTGLEDLQKKYPEFIQNLRGKGRGTFIAWDTPDEAKRDKLLKKA 425
Query: 196 KDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTI 234
++ G+ IRL P L + DI + I
Sbjct: 426 RNNGVNIGGCGVKAIRLRPMLVFQKHH----ADIFLEII 460
>gnl|CDD|235917 PRK07046, PRK07046, aminotransferase; Validated.
Length = 453
Score = 78.5 bits (194), Expect = 7e-17
Identities = 45/151 (29%), Positives = 66/151 (43%), Gaps = 27/151 (17%)
Query: 12 VPAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQT------ 65
+ A L ++ A + EP G V+P+ G+ + +R L +Y L + DE T
Sbjct: 210 LEAALADG-DVAAVLAEPAMTNIGMVLPEPGFHEALRELTRRYGTLLVIDETHTISSGPG 268
Query: 66 GLGRTGKLLAIHYEDVRPDIVILGKALSGGL----YPISAVLAD--DEVMGTLVPGTH-- 117
G R L PD +++GK ++GG+ Y SA LA+ + PG
Sbjct: 269 GYTRAHGL--------EPDFLVVGKPIAGGVPCAVYGFSAELAERAQAAKASAPPGHSGI 320
Query: 118 GSTYGGNPLACKLAMTALDVILEENMIENAY 148
G+T N LAM A+ L E M E AY
Sbjct: 321 GTTLSANA----LAMAAMRATLAEVMTEAAY 347
>gnl|CDD|234803 PRK00615, PRK00615, glutamate-1-semialdehyde aminotransferase;
Provisional.
Length = 433
Score = 78.7 bits (194), Expect = 8e-17
Identities = 51/164 (31%), Positives = 77/164 (46%), Gaps = 13/164 (7%)
Query: 20 PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYE 79
+ + EPI G V+P G+++ + C + L I DEV TG R + A
Sbjct: 200 HRVAGVIFEPICANMGVVLPKPGFIEGIIQTCRRTGSLSIMDEVVTGF-RVAQGGAAAIY 258
Query: 80 DVRPDIVILGKALSGGLYPISAVLADDEVMGTLVP-GT--HGSTYGGNPLACKLAMTALD 136
V+PDI + GK L GGL P +AV+A +M L P GT T GNPLA +++
Sbjct: 259 HVKPDITVYGKILGGGL-PAAAVVAHKSIMDHLAPEGTIFQAGTLSGNPLAMAAGKASIN 317
Query: 137 VILEENMIENAYKMGEIFRSELRSRLSPDIVPVVRGKGLLNAIV 180
+ E+ + + F LSP I ++R +G ++V
Sbjct: 318 LCREQGFYTQLSTLEQNF-------LSP-IEEMIRSQGFPVSLV 353
>gnl|CDD|183493 PRK12389, PRK12389, glutamate-1-semialdehyde aminotransferase;
Provisional.
Length = 428
Score = 73.5 bits (181), Expect = 4e-15
Identities = 45/141 (31%), Positives = 64/141 (45%), Gaps = 13/141 (9%)
Query: 20 PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGL----GRTGKLLA 75
+ A +VEPI G G V P G+L+ V L + L I DEV T G LL
Sbjct: 199 DEVAAVLVEPIVGNFGIVEPKPGFLEAVNELAHEAGALVIYDEVITAFRFMYGGAQDLLG 258
Query: 76 IHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGT---LVPGTHGSTYGGNPLACKLAM 132
+ PD+ LGK + GGL PI A ++M L P T GNP + +
Sbjct: 259 VE-----PDLTALGKIIGGGL-PIGAYGGRKDIMEQVAPLGPAYQAGTMAGNPASMAAGI 312
Query: 133 TALDVILEENMIENAYKMGEI 153
L+V+ +E + E ++G +
Sbjct: 313 ACLEVLQQEGVYEKLDRLGAM 333
>gnl|CDD|178100 PLN02482, PLN02482, glutamate-1-semialdehyde 2,1-aminomutase.
Length = 474
Score = 71.3 bits (175), Expect = 3e-14
Identities = 41/116 (35%), Positives = 58/116 (50%), Gaps = 9/116 (7%)
Query: 22 ICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDV 81
I A ++EP+ G +G +VP +L+ +R + + L + DEV TG R A Y +
Sbjct: 247 IAAVILEPVVGNSGFIVPKKEFLEGLREITKENGALLVFDEVMTGF-RIAYGGAQEYFGI 305
Query: 82 RPDIVILGKALSGGLYPISAVLADDEVMGTLVPGT---HGSTYGGNPLACKLAMTA 134
PD+ LGK + GGL P+ A E+M + P T GNP LAMTA
Sbjct: 306 TPDLTTLGKVIGGGL-PVGAYGGRREIMEMVAPAGPMYQAGTLSGNP----LAMTA 356
>gnl|CDD|215526 PLN02974, PLN02974, adenosylmethionine-8-amino-7-oxononanoate
transaminase.
Length = 817
Score = 70.5 bits (173), Expect = 6e-14
Identities = 55/185 (29%), Positives = 82/185 (44%), Gaps = 20/185 (10%)
Query: 14 AKLKSNPNICAFMVEP-IQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGK 72
N +I A ++EP + G G ++ D + + + +C + I DEV TGL R G
Sbjct: 577 EASAKNGHIAALIIEPVLHGAGGMLLIDPLFQRALVQVCRSRKIPVIFDEVFTGLWRLGV 636
Query: 73 LLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEV----------MGTLVPGTHGSTYG 122
A +PDI K L+GGL P++A LA +EV L HG +Y
Sbjct: 637 ESAWELLGCKPDIACYAKLLTGGLVPLAATLATEEVFEAFRGPSKLDALL----HGHSYT 692
Query: 123 GNPLACKLAMTAL----DVILEENMIENAYKMGEIFRSELRSRLSP-DIVPVVRGKGLLN 177
+P+ C A AL D N+I ++ E++ EL +S V V G +
Sbjct: 693 AHPMGCAAAAKALQWYKDPSTNPNLIPPGSRLRELWDEELVRAISSLPNVERVVSLGTVL 752
Query: 178 AIVLD 182
A+ LD
Sbjct: 753 ALELD 757
>gnl|CDD|180471 PRK06209, PRK06209, glutamate-1-semialdehyde 2,1-aminomutase;
Provisional.
Length = 431
Score = 65.1 bits (159), Expect = 3e-12
Identities = 45/143 (31%), Positives = 66/143 (46%), Gaps = 22/143 (15%)
Query: 22 ICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDV 81
I ++EP A A P DG+L +VR LC + LFI DE+ TG R A +
Sbjct: 188 IACVILEP----ATADEPQDGFLHEVRRLCHENGALFILDEMITGF-RWHMRGAQKLYGI 242
Query: 82 RPDIVILGKALSGGLYPISAVLADDEVM--GT----------LVPGTHGSTYGGNPLACK 129
PD+ GKAL G + +SA+ E M G L+ THG+ LA
Sbjct: 243 VPDLSCFGKALGNG-FAVSALAGKREYMELGGLEHTDRERVFLLSTTHGAETHA--LAA- 298
Query: 130 LAMTALDVILEENMIENAYKMGE 152
A+ + + +E++IE ++ G
Sbjct: 299 -AIATMAIYRDEDVIERLHEQGA 320
>gnl|CDD|99742 cd01494, AAT_I, Aspartate aminotransferase (AAT) superfamily (fold
type I) of pyridoxal phosphate (PLP)-dependent enzymes.
PLP combines with an alpha-amino acid to form a compound
called a Schiff base or aldimine intermediate, which
depending on the reaction, is the substrate in four
kinds of reactions (1) transamination (movement of amino
groups), (2) racemization (redistribution of
enantiomers), (3) decarboxylation (removing COOH
groups), and (4) various side-chain reactions depending
on the enzyme involved. Pyridoxal phosphate (PLP)
dependent enzymes were previously classified into alpha,
beta and gamma classes, based on the chemical
characteristics (carbon atom involved) of the reaction
they catalyzed. The availability of several structures
allowed a comprehensive analysis of the evolutionary
classification of PLP dependent enzymes, and it was
found that the functional classification did not always
agree with the evolutionary history of these enzymes.
Structure and sequence analysis has revealed that the
PLP dependent enzymes can be classified into four major
groups of different evolutionary origin: aspartate
aminotransferase superfamily (fold type I), tryptophan
synthase beta superfamily (fold type II), alanine
racemase superfamily (fold type III), and D-amino acid
superfamily (fold type IV) and Glycogen phophorylase
family (fold type V).
Length = 170
Score = 40.8 bits (96), Expect = 1e-04
Identities = 21/82 (25%), Positives = 35/82 (42%), Gaps = 8/82 (9%)
Query: 15 KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLL 74
+LK+ PN+ ++ P G +VP LK++R + +Y +L + D G +
Sbjct: 86 ELKAKPNVALIVITPNTTSGGVLVP----LKEIRKIAKEYGILLLVDAASAGGASPAPGV 141
Query: 75 AIHYEDVRPDIVILG--KALSG 94
I D+V K L G
Sbjct: 142 LIPEG--GADVVTFSLHKNLGG 161
>gnl|CDD|223234 COG0156, BioF, 7-keto-8-aminopelargonate synthetase and related
enzymes [Coenzyme metabolism].
Length = 388
Score = 36.5 bits (85), Expect = 0.008
Identities = 56/210 (26%), Positives = 84/210 (40%), Gaps = 36/210 (17%)
Query: 35 GAVVPDDGYLKKVRALCSQYNVLFIADEVQ-TG-LGRTGKLLAIH--YEDVRPDIVI--L 88
G + P L ++ L +Y L DE G LG G+ LA H E DI++ L
Sbjct: 185 GDIAP----LPELVELAEKYGALLYVDEAHAVGVLGPNGRGLAEHFGLEPEEVDIIVGTL 240
Query: 89 GKAL--SGGLYPISAVLADDEVMGTLVPGTHGSTYGGN--PLACKLAMTALDVILEENMI 144
GKAL SGG SA L D L + P A+ AL ++ E
Sbjct: 241 GKALGSSGGYIAGSAALIDY-----LRNRARPFIFSTALPPAVAAAALAALRILEEGPER 295
Query: 145 ENA-YKMGEIFRSELR-------SRLSPDIVPVVRGKGLLNAIVLDKSILE--VYDVCIK 194
++ FRS L+ SP I+PV+ G A+ +++LE +Y I+
Sbjct: 296 RERLQELAAFFRSLLKALGLVLLPSESP-IIPVILGDEER-ALEASRALLEEGIYVSAIR 353
Query: 195 MKDAGLVTKPISNNIIRLSPALNITEQELR 224
T P +R++ TE+++
Sbjct: 354 PP-----TVPKGTARLRITLTAAHTEEDID 378
>gnl|CDD|180734 PRK06855, PRK06855, aminotransferase; Validated.
Length = 433
Score = 34.9 bits (81), Expect = 0.029
Identities = 14/49 (28%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 15 KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEV 63
K+K NP+I ++ GAV P + L+++ + +Y++ I DE+
Sbjct: 165 KVKYNPSIAGILLINPDNPTGAVYPKE-ILREIVDIAREYDLFIICDEI 212
>gnl|CDD|129937 TIGR00858, bioF, 8-amino-7-oxononanoate synthase.
7-keto-8-aminopelargonic acid synthetase is an alternate
name. This model represents 8-amino-7-oxononanoate
synthase, the BioF protein of biotin biosynthesis. This
model is based on a careful phylogenetic analysis to
separate members of this family from
2-amino-3-ketobutyrate and other related pyridoxal
phosphate-dependent enzymes. In several species,
including Staphylococcus and Coxiella, a candidate
8-amino-7-oxononanoate synthase is confirmed by location
in the midst of a biotin biosynthesis operon but scores
below the trusted cutoff of this model [Biosynthesis of
cofactors, prosthetic groups, and carriers, Biotin].
Length = 360
Score = 34.9 bits (81), Expect = 0.030
Identities = 37/150 (24%), Positives = 57/150 (38%), Gaps = 28/150 (18%)
Query: 44 LKKVRALCSQYNVLFIADEVQ-TG-LGRTGKLLAIHY--EDVRPDIVI--LGKAL--SGG 95
L ++ AL +Y + D+ TG LG G+ H+ + DI + L KAL G
Sbjct: 165 LPQLVALAERYGAWLMVDDAHGTGVLGEDGRGTLEHFGLKPEPVDIQVGTLSKALGSYGA 224
Query: 96 LYPISAVLADDEVMGTLVPGTHGSTY----GGNPLACKLAMTALDVILEEN-MIENAYKM 150
V ++ L+ T P A+ AL++I EE E +
Sbjct: 225 -----YVAGSQALIDYLI--NRARTLIFSTALPPAVAAAALAALELIQEEPWRREKLLAL 277
Query: 151 GEIFRSELRSR-------LSPDIVPVVRGK 173
R+ L + +P IVPV+ G
Sbjct: 278 IARLRAGLEALGFTLMPSCTP-IVPVIIGD 306
>gnl|CDD|215756 pfam00155, Aminotran_1_2, Aminotransferase class I and II.
Length = 357
Score = 32.7 bits (75), Expect = 0.16
Identities = 41/208 (19%), Positives = 72/208 (34%), Gaps = 35/208 (16%)
Query: 44 LKKVRALCSQYNVLFIADEVQTGLGRTGKL--LAIHYEDVRPDIVI---LGKALSGGLY- 97
L+K+ L ++N+L + DE G P++++ KA GL
Sbjct: 164 LEKLLDLAKEHNILLLVDEAYAGFVFGSLDAVATRALLAEGPNLLVVGSFSKAF--GLAG 221
Query: 98 -PISAVLADDEV---MGTLVPGTHGSTYGGNPLACKLAMTALDVILE-ENMIENAYKMGE 152
+ +L + V + L + ST+ A L V E E M + + +
Sbjct: 222 WRVGYILGNAAVISQLRKLARPFYSSTHLQ-AAAAAALSDPLLVASELEEMRQRIKERRD 280
Query: 153 IFRSELRSR----LSPD--IVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPIS 206
R L + L + L + V ++ G+ P S
Sbjct: 281 YLRDGLEAAGLSVLPSQAGFFLLTGLDPEA--------ALALAQVLLEEV--GVYVTPGS 330
Query: 207 NNI----IRLSPALNITEQELREGLDII 230
+ +R++ A TE+EL E L+ I
Sbjct: 331 SFGGPGWLRITVA-GGTEEELEELLEAI 357
>gnl|CDD|130881 TIGR01822, 2am3keto_CoA, 2-amino-3-ketobutyrate coenzyme A ligase.
This model represents a narrowly defined clade of animal
and bacterial (almost exclusively Proteobacterial)
2-amino-3-ketobutyrate--CoA ligase. This enzyme can act
in threonine catabolism. The closest homolog from
Bacillus subtilis, and sequences like it, may be
functionally equivalent but were not included in the
model because of difficulty in finding reports of
function [Energy metabolism, Amino acids and amines].
Length = 393
Score = 32.1 bits (73), Expect = 0.23
Identities = 22/59 (37%), Positives = 29/59 (49%), Gaps = 7/59 (11%)
Query: 44 LKKVRALCSQYNVLFIADEVQ-TG-LGRTGKLLAIHYEDV--RPDIV--ILGKALSGGL 96
L ++ L +Y+ L + DE TG LG TG+ V R DI+ LGKAL G
Sbjct: 189 LDEICDLADKYDALVMVDECHATGFLGPTGRGSH-ELCGVMGRVDIITGTLGKALGGAS 246
>gnl|CDD|223153 COG0075, COG0075, Serine-pyruvate aminotransferase/archaeal
aspartate aminotransferase [Amino acid transport and
metabolism].
Length = 383
Score = 31.4 bits (72), Expect = 0.33
Identities = 26/102 (25%), Positives = 43/102 (42%), Gaps = 17/102 (16%)
Query: 6 PVKSKQVPAKLKSNPNICAFMVEPIQGE--AGAVVPDDGYLKKVRALCSQYNVLFIADEV 63
V ++V L +P+I A V + E G + P LK++ ++ L I D V
Sbjct: 116 AVDPEEVEEALDKDPDIKAVAV--VHNETSTGVLNP----LKEIAKAAKEHGALLIVDAV 169
Query: 64 QTGLGRTGKLLAIHYEDVRPDIVILG--KALSG--GLYPISA 101
+ LG + ++ D+ I G KAL GL ++
Sbjct: 170 -SSLGGE----PLKVDEWGIDVAITGSQKALGAPPGLAFVAV 206
>gnl|CDD|99734 cd00609, AAT_like, Aspartate aminotransferase family. This family
belongs to pyridoxal phosphate (PLP)-dependent aspartate
aminotransferase superfamily (fold I). Pyridoxal
phosphate combines with an alpha-amino acid to form a
compound called a Schiff base or aldimine intermediate,
which depending on the reaction, is the substrate in
four kinds of reactions (1) transamination (movement of
amino groups), (2) racemization (redistribution of
enantiomers), (3) decarboxylation (removing COOH
groups), and (4) various side-chain reactions depending
on the enzyme involved. Pyridoxal phosphate (PLP)
dependent enzymes were previously classified into alpha,
beta and gamma classes, based on the chemical
characteristics (carbon atom involved) of the reaction
they catalyzed. The availability of several structures
allowed a comprehensive analysis of the evolutionary
classification of PLP dependent enzymes, and it was
found that the functional classification did not always
agree with the evolutionary history of these enzymes.
The major groups in this CD corresponds to Aspartate
aminotransferase a, b and c, Tyrosine, Alanine,
Aromatic-amino-acid, Glutamine phenylpyruvate,
1-Aminocyclopropane-1-carboxylate synthase,
Histidinol-phosphate, gene products of malY and cobC,
Valine-pyruvate aminotransferase and Rhizopine
catabolism regulatory protein.
Length = 350
Score = 31.2 bits (71), Expect = 0.49
Identities = 29/143 (20%), Positives = 52/143 (36%), Gaps = 12/143 (8%)
Query: 35 GAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVI----LGK 90
GAV+ ++ L+++ L ++ +L I+DE L G+ + VI K
Sbjct: 146 GAVLSEE-ELEELAELAKKHGILIISDEAYAELVYDGEPPPALALLDAYERVIVLRSFSK 204
Query: 91 ALS-GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTAL----DVILEENMIE 145
GL I ++A E + + T G + A A + LEE + E
Sbjct: 205 TFGLPGLR-IGYLIAPPEELLERLKKLLPYTTSGPSTLSQAAAAAALDDGEEHLEE-LRE 262
Query: 146 NAYKMGEIFRSELRSRLSPDIVP 168
+ + L+ +V
Sbjct: 263 RYRRRRDALLEALKELGPLVVVK 285
>gnl|CDD|227766 COG5479, COG5479, Uncharacterized protein potentially involved in
peptidoglycan biosynthesis [Cell envelope biogenesis,
outer membrane].
Length = 556
Score = 31.3 bits (71), Expect = 0.50
Identities = 13/36 (36%), Positives = 16/36 (44%)
Query: 88 LGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGG 123
LG ALS P L + + GT P + GS Y
Sbjct: 156 LGGALSWLGPPTEGELNNPDGYGTRQPFSGGSIYWH 191
>gnl|CDD|168237 PRK05772, PRK05772, translation initiation factor IF-2B subunit
alpha; Provisional.
Length = 363
Score = 30.5 bits (69), Expect = 0.74
Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
Query: 157 ELRSRLSPDIVPVV-RGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPISNNIIRLSPA 215
E++ P ++P++ + L +LD+S+L V + +K V I N +R +PA
Sbjct: 7 EVKELFKPKLLPIIWKDNTL---TLLDQSLLPFETVYVDLKTVEEVALAIRNMQVRGAPA 63
Query: 216 LNIT 219
+ IT
Sbjct: 64 IGIT 67
>gnl|CDD|99747 cd06454, KBL_like, KBL_like; this family belongs to the pyridoxal
phosphate (PLP)-dependent aspartate aminotransferase
superfamily (fold I). The major groups in this CD
corresponds to serine palmitoyltransferase (SPT),
5-aminolevulinate synthase (ALAS),
8-amino-7-oxononanoate synthase (AONS), and
2-amino-3-ketobutyrate CoA ligase (KBL). SPT is
responsible for the condensation of L-serine with
palmitoyl-CoA to produce 3-ketodihydrospingosine, the
reaction of the first step in sphingolipid biosynthesis.
ALAS is involved in heme biosynthesis; it catalyzes the
synthesis of 5-aminolevulinic acid from glycine and
succinyl-coenzyme A. AONS catalyses the decarboxylative
condensation of l-alanine and pimeloyl-CoA in the first
committed step of biotin biosynthesis. KBL catalyzes the
second reaction step of the metabolic degradation
pathway for threonine converting 2-amino-3-ketobutyrate,
to glycine and acetyl-CoA. The members of this CD are
widely found in all three forms of life.
Length = 349
Score = 28.7 bits (65), Expect = 3.0
Identities = 44/208 (21%), Positives = 76/208 (36%), Gaps = 32/208 (15%)
Query: 35 GAVVPDDGYLKKVRALCSQYNVLFIADEVQ-TGL-GRTGKLLAIHYEDV-RPDIVI--LG 89
G + P L ++ L +Y + DE G+ G G+ + DI++ LG
Sbjct: 146 GDIAP----LPELVDLAKKYGAILFVDEAHSVGVYGPHGRGVEEFGGLTDDVDIIMGTLG 201
Query: 90 KAL--SGGLYPISAVLADDEVMGTLVPGTHGSTYGG--NPLACKLAMTALDVILEE-NMI 144
KA GG + E++ L G + P A+ AL+V+
Sbjct: 202 KAFGAVGG-----YIAGSKELIDYLRSYARGFIFSTSLPPAVAAAALAALEVLQGGPERR 256
Query: 145 ENAYKMGEIFRSELRSR-----LSPD-IVPVVRGKGLLNAIVLDKSILE--VYDVCIKMK 196
E + R L+ SP I+P + G A+ ++LE +Y I
Sbjct: 257 ERLQENVRYLRRGLKELGFPVGGSPSHIIPPLIGDDPAKAVAFSDALLERGIYVQAI--- 313
Query: 197 DAGLVTKPISNNIIRLSPALNITEQELR 224
T P +R+S + T++++
Sbjct: 314 --RYPTVPRGTARLRISLSAAHTKEDID 339
>gnl|CDD|148309 pfam06626, DUF1152, Protein of unknown function (DUF1152). This
family consists of several hypothetical archaeal
proteins of unknown function.
Length = 297
Score = 28.4 bits (64), Expect = 3.2
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 4/38 (10%)
Query: 151 GEIFRSELRSRLSPDIVPVVRGKGLLNAIVLDKSILEV 188
GE+ R L R+S + R GLL + LD+ +EV
Sbjct: 170 GELSREYLLQRISE----IAREGGLLGIVGLDREDVEV 203
>gnl|CDD|224090 COG1168, MalY, Bifunctional PLP-dependent enzyme with
beta-cystathionase and maltose regulon repressor
activities [Amino acid transport and metabolism].
Length = 388
Score = 28.4 bits (64), Expect = 3.2
Identities = 8/21 (38%), Positives = 14/21 (66%)
Query: 43 YLKKVRALCSQYNVLFIADEV 63
L+K+ LC ++ V I+DE+
Sbjct: 179 ELRKIAELCLRHGVRVISDEI 199
>gnl|CDD|224252 COG1333, ResB, ResB protein required for cytochrome c biosynthesis
[Posttranslational modification, protein turnover,
chaperones].
Length = 478
Score = 28.5 bits (64), Expect = 3.3
Identities = 9/43 (20%), Positives = 17/43 (39%), Gaps = 3/43 (6%)
Query: 85 IVILGKALSGGLYP---ISAVLADDEVMGTLVPGTHGSTYGGN 124
++IL AL Y + ++ D E + +P + G
Sbjct: 157 LIILVGALLDFFYEGMVVGEIVPDGETNCSALPAANDKFRAGP 199
>gnl|CDD|226974 COG4626, COG4626, Phage terminase-like protein, large subunit
[General function prediction only].
Length = 546
Score = 28.5 bits (64), Expect = 3.4
Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 4/58 (6%)
Query: 170 VRGKGLLNAIVLDKS-ILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREG 226
+R K L+ + D S E D + +AG+ I +LS A+ E++L EG
Sbjct: 422 IREKFLIKLVGFDPSGAGEFRD---ALAEAGIKVVGIPQGFKKLSGAIKTIERKLAEG 476
>gnl|CDD|235054 PRK02615, PRK02615, thiamine-phosphate pyrophosphorylase;
Provisional.
Length = 347
Score = 27.9 bits (63), Expect = 4.8
Identities = 8/15 (53%), Positives = 11/15 (73%)
Query: 45 KKVRALCSQYNVLFI 59
KK++ LC +Y LFI
Sbjct: 191 KKLKELCHRYGALFI 205
>gnl|CDD|102071 PRK05937, PRK05937, 8-amino-7-oxononanoate synthase; Provisional.
Length = 370
Score = 27.8 bits (62), Expect = 5.7
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 4/53 (7%)
Query: 44 LKKVRALCSQYNVLFIADEVQT-GL-GRTGKLL--AIHYEDVRPDIVILGKAL 92
L+++ AL +Y+ I DE G+ G GK ++ YE+ +V KAL
Sbjct: 162 LEQIIALSKKYHAHLIVDEAHAMGIFGDDGKGFCHSLGYENFYAVLVTYSKAL 214
>gnl|CDD|223513 COG0436, COG0436, Aspartate/tyrosine/aromatic aminotransferase
[Amino acid transport and metabolism].
Length = 393
Score = 27.6 bits (62), Expect = 6.5
Identities = 9/29 (31%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Query: 35 GAVVPDDGYLKKVRALCSQYNVLFIADEV 63
GAV + LK + L +++++ I+DE+
Sbjct: 177 GAVYSKE-ELKAIVELAREHDIIIISDEI 204
>gnl|CDD|224029 COG1104, NifS, Cysteine sulfinate desulfinase/cysteine desulfurase
and related enzymes [Amino acid transport and
metabolism].
Length = 386
Score = 27.5 bits (62), Expect = 7.3
Identities = 37/193 (19%), Positives = 66/193 (34%), Gaps = 53/193 (27%)
Query: 31 QGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGK 90
E G + P + ++ +C + +LF D VQ +G+ + I E++ D++
Sbjct: 151 NNETGTIQP----IAEIGEICKERGILFHVDAVQ-AVGK----IPIDLEELGVDLLSFSA 201
Query: 91 ALSGGLYPISAVLADDEVMGTLVPGTHGSTY-GGNP-------------LACKLAMTALD 136
GG I A+ V L P HG G A ++A+ L+
Sbjct: 202 HKFGGPKGIGALYVRPGVR--LEPLIHGGGQERGLRSGTENVPGIVGFGKAAEIAVEELE 259
Query: 137 VILEENMIENAYKMGEIFRSELRSRL------------SPDIV----PVVRGKGLLNAIV 180
K+ + L + P+I+ P V G+ LL A
Sbjct: 260 EENARLR-----KLRDRLEDGLLEIIPDVYLNGDDEPRLPNILNFSFPGVEGESLLLA-- 312
Query: 181 LDKSILEVYDVCI 193
L++ + +
Sbjct: 313 -----LDLAGIAV 320
>gnl|CDD|235465 PRK05437, PRK05437, isopentenyl pyrophosphate isomerase;
Provisional.
Length = 352
Score = 27.4 bits (62), Expect = 7.9
Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 4/44 (9%)
Query: 42 GYLKKVRALCSQYNVLFIADEVQTGLGR-TGKLLA---IHYEDV 81
G+L + + S V I EV G+ + T K LA + DV
Sbjct: 173 GWLDNIAEIVSALPVPVIVKEVGFGISKETAKRLADAGVKAIDV 216
>gnl|CDD|234590 PRK00043, thiE, thiamine-phosphate pyrophosphorylase; Reviewed.
Length = 212
Score = 26.7 bits (60), Expect = 8.8
Identities = 5/18 (27%), Positives = 10/18 (55%)
Query: 44 LKKVRALCSQYNVLFIAD 61
+ ++ LC +Y V I +
Sbjct: 54 ARALKELCRRYGVPLIVN 71
>gnl|CDD|223936 COG1004, Ugd, Predicted UDP-glucose 6-dehydrogenase [Cell envelope
biogenesis, outer membrane].
Length = 414
Score = 27.2 bits (61), Expect = 9.2
Identities = 12/33 (36%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Query: 199 GLVTKPISNNIIRLSPALNITEQELREGLDIII 231
GL KP ++++ R SPAL+I ++ +G ++I
Sbjct: 317 GLAFKPNTDDM-RESPALDIIKRLQEKGAEVIA 348
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.138 0.388
Gapped
Lambda K H
0.267 0.0730 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 12,583,821
Number of extensions: 1246936
Number of successful extensions: 1359
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1173
Number of HSP's successfully gapped: 124
Length of query: 242
Length of database: 10,937,602
Length adjustment: 94
Effective length of query: 148
Effective length of database: 6,768,326
Effective search space: 1001712248
Effective search space used: 1001712248
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.1 bits)