RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6548
(242 letters)
>1z7d_A Ornithine aminotransferase; structural genomics consortium, SGC,
malaria; 2.10A {Plasmodium yoelii yoelii} SCOP: c.67.1.4
PDB: 3lg0_A 3ntj_A
Length = 433
Score = 360 bits (926), Expect = e-125
Identities = 119/224 (53%), Positives = 164/224 (73%), Gaps = 1/224 (0%)
Query: 18 SNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIH 77
+PN+CAF+VEPIQGEAG +VP D YL+ V +C +YNVLF+ADEVQTGLGRTGKLL +H
Sbjct: 209 KDPNVCAFIVEPIQGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQTGLGRTGKLLCVH 268
Query: 78 YEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDV 137
+ +V+PD+++LGKALSGG YPISAVLA+D++M + PG HGSTYGGNPLA + + AL+V
Sbjct: 269 HYNVKPDVILLGKALSGGHYPISAVLANDDIMLVIKPGEHGSTYGGNPLAASICVEALNV 328
Query: 138 ILEENMIENAYKMGEIFRSELRSRLS-PDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMK 196
++ E + ENA K+G F L+ L IV VRGKGLL AI ++ V D+C+K+K
Sbjct: 329 LINEKLCENAEKLGGPFLENLKRELKDSKIVRDVRGKGLLCAIEFKNELVNVLDICLKLK 388
Query: 197 DAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINTMAAK 240
+ GL+T+ + + IRL+P L IT+++L E +II+ T+ +
Sbjct: 389 ENGLITRDVHDKTIRLTPPLCITKEQLDECTEIIVKTVKFFDER 432
>3ruy_A Ornithine aminotransferase; structural genomics, csgid, center for
structural genomics O infectious diseases, alpha and
beta protein; HET: LLP; 2.65A {Bacillus anthracis}
Length = 392
Score = 356 bits (916), Expect = e-124
Identities = 95/217 (43%), Positives = 144/217 (66%), Gaps = 4/217 (1%)
Query: 19 NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHY 78
PN AF++EPIQGEAG +P G+LK+ +C + NVLF+ADE+QTGLGRTGK+ A +
Sbjct: 180 TPNTAAFILEPIQGEAGINIPPAGFLKEALEVCKKENVLFVADEIQTGLGRTGKVFACDW 239
Query: 79 EDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVI 138
++V PD+ ILGKAL GG++PIS A+ +++G PG+HGST+GGNPLAC +++ AL+V+
Sbjct: 240 DNVTPDMYILGKALGGGVFPISCAAANRDILGVFEPGSHGSTFGGNPLACAVSIAALEVL 299
Query: 139 LEENMIENAYKMGEIFRSELRSRLSPDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDA 198
EE + E + ++GE +L+ + ++ VRGKGL I L++ C ++K A
Sbjct: 300 EEEKLTERSLQLGEKLVGQLK-EIDNPMITEVRGKGLFIGIELNEP---ARPYCEQLKAA 355
Query: 199 GLVTKPISNNIIRLSPALNITEQELREGLDIIINTIN 235
GL+ K N+IR++P L I+E++L I ++
Sbjct: 356 GLLCKETHENVIRIAPPLVISEEDLEWAFQKIKAVLS 392
>2oat_A Ornithine aminotransferase; 5-fluoromethylornithine, PLP-dependent
ENZ pyridoxal phosphate; HET: PFM; 1.95A {Homo sapiens}
SCOP: c.67.1.4 PDB: 1oat_A* 2byj_A* 2byl_A* 1gbn_A*
2can_A*
Length = 439
Score = 357 bits (919), Expect = e-124
Identities = 133/220 (60%), Positives = 172/220 (78%), Gaps = 2/220 (0%)
Query: 18 SNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIH 77
+PN+ AFMVEPIQGEAG VVPD GYL VR LC+++ VLFIADE+QTGL RTG+ LA+
Sbjct: 220 QDPNVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTGRWLAVD 279
Query: 78 YEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDV 137
YE+VRPDIV+LGKALSGGLYP+SAVL DD++M T+ PG HGSTYGGNPL C++A+ AL+V
Sbjct: 280 YENVRPDIVLLGKALSGGLYPVSAVLCDDDIMLTIKPGEHGSTYGGNPLGCRVAIAALEV 339
Query: 138 ILEENMIENAYKMGEIFRSELRSRLSPDIVPVVRGKGLLNAIVLDKSI-LEVYDVCIKMK 196
+ EEN+ ENA K+G I R+EL +L D+V VRGKGLLNAIV+ ++ + + VC++++
Sbjct: 340 LEEENLAENADKLGIILRNELM-KLPSDVVTAVRGKGLLNAIVIKETKDWDAWKVCLRLR 398
Query: 197 DAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINT 236
D GL+ KP +IIR +P L I E ELRE ++II TI +
Sbjct: 399 DNGLLAKPTHGDIIRFAPPLVIKEDELRESIEIINKTILS 438
>1vef_A Acetylornithine/acetyl-lysine aminotransferase; PLP, riken
structural genomics/proteomics initiative, RSGI,
structural genomics; HET: PLP; 1.35A {Thermus
thermophilus} SCOP: c.67.1.4 PDB: 1wkg_A* 1wkh_A*
Length = 395
Score = 269 bits (691), Expect = 8e-90
Identities = 67/212 (31%), Positives = 110/212 (51%), Gaps = 4/212 (1%)
Query: 19 NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHY 78
+ A ++EP+QGE G +L+ R + + L I DE+QTG+GRTGK A +
Sbjct: 183 DEETAAVILEPVQGEGGVRPATPEFLRAAREITQEKGALLILDEIQTGMGRTGKRFAFEH 242
Query: 79 EDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVI 138
+ PDI+ L KAL GG+ P+ + +EV ++ G HG+T+GGNPLA + A+ +
Sbjct: 243 FGIVPDILTLAKALGGGV-PLGVAVMREEVARSMPKGGHGTTFGGNPLAMAAGVAAIRYL 301
Query: 139 LEENMIENAYKMGEIFRSELRSRLSPDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDA 198
+ E A ++G F +LR+ SP I VRG GL+ + L + + K+
Sbjct: 302 ERTRLWERAAELGPWFMEKLRAIPSPKIRE-VRGMGLMVGLELKEKAAP--YIARLEKEH 358
Query: 199 GLVTKPISNNIIRLSPALNITEQELREGLDII 230
++ +IR P L I +++L ++ +
Sbjct: 359 RVLALQAGPTVIRFLPPLVIEKEDLERVVEAV 390
>2pb2_A Acetylornithine/succinyldiaminopimelate aminotran; ARGD, pyridoxal
5'-phosphate, arginine metabolism, lysine biosynthesis,
gabaculine; HET: PLP; 1.91A {Salmonella typhimurium}
PDB: 2pb0_A*
Length = 420
Score = 259 bits (665), Expect = 1e-85
Identities = 78/223 (34%), Positives = 117/223 (52%), Gaps = 3/223 (1%)
Query: 19 NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHY 78
+ + CA +VEPIQGE G +LK +R LC ++ L + DEVQ G+GRTG L A +
Sbjct: 199 DDHTCAVVVEPIQGEGGVQAATPEFLKGLRDLCDEHQALLVFDEVQCGMGRTGDLFAYMH 258
Query: 79 EDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVI 138
V PDI+ KAL GG P+SA+L E+ G+HGSTYGGNPLAC +A A D+I
Sbjct: 259 YGVTPDILTSAKALGGGF-PVSAMLTTQEIASAFHVGSHGSTYGGNPLACAVAGAAFDII 317
Query: 139 LEENMIENAYKMGEIFRSELRSRLS-PDIVPVVRGKGLLNAIVLDKSI-LEVYDVCIKMK 196
+++ + + F L++ DI +RG GLL L D
Sbjct: 318 NTPEVLQGIHTKRQQFVQHLQAIDEQFDIFSDIRGMGLLIGAELKPKYKGRARDFLYAGA 377
Query: 197 DAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINTMAA 239
+AG++ +++R +P+L + E ++ EG+ + + A
Sbjct: 378 EAGVMVLNAGADVMRFAPSLVVEEADIHEGMQRFAQAVGKVVA 420
>2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal
phosphate, PLP, RV3290C, lysine amino transferase; HET:
PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A*
2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A
Length = 449
Score = 258 bits (661), Expect = 9e-85
Identities = 63/219 (28%), Positives = 96/219 (43%), Gaps = 3/219 (1%)
Query: 14 AKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKL 73
A +I F+ EPIQGE G + +R LC +++ L I DEVQTG G TG
Sbjct: 224 AFETRPHDIACFVAEPIQGEGGDRHFRPEFFAAMRELCDEFDALLIFDEVQTGCGLTGTA 283
Query: 74 LAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMT 133
A DV PDIV GK + + VP ST+GGN A
Sbjct: 284 WAYQQLDVAPDIVAFGKKTQVCGVMAGRRVDEVADNVFAVPSRLNSTWGGNLTDMVRARR 343
Query: 134 ALDVILEENMIENAYKMGEIFRSELRSRLS--PDIVPVVRGKGLLNAIVLDKSILEVYDV 191
L+VI E + E A + G+ R+ L + P +V RG+GL+ A L + ++
Sbjct: 344 ILEVIEAEGLFERAVQHGKYLRARLDELAADFPAVVLDPRGRGLMCAFSLPTTAD-RDEL 402
Query: 192 CIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDII 230
++ ++ P + +R P L ++ E+ + +
Sbjct: 403 IRQLWQRAVIVLPAGADTVRFRPPLTVSTAEIDAAIAAV 441
>2eo5_A 419AA long hypothetical aminotransferase; PLP enzyme, structural
genomics, NPPSFA, N project on protein structural and
functional analyses; HET: PLP; 1.90A {Sulfolobus
tokodaii}
Length = 419
Score = 254 bits (652), Expect = 8e-84
Identities = 72/210 (34%), Positives = 118/210 (56%), Gaps = 10/210 (4%)
Query: 21 NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYED 80
+ EPIQGE G V+P + +++ L +Y +L + DEVQ GLGRTGKL AI +
Sbjct: 212 EVAGIFFEPIQGEGGYVIPPKNFFAELQKLAKKYGILLVDDEVQMGLGRTGKLFAIENFN 271
Query: 81 VRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILE 140
PD++ L KAL GG+ PI A + ++ PG H +T+GGN LAC + +D++
Sbjct: 272 TVPDVITLAKALGGGIMPIGATIFRKDLD--FKPGMHSNTFGGNALACAIGSKVIDIV-- 327
Query: 141 ENMIENAYKMGEIFRSELRSRLSPDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDAGL 200
++++ + ++G+IF EL+ + VRG GL + ++ + + + GL
Sbjct: 328 KDLLPHVNEIGKIFAEELQ-----GLADDVRGIGLAWGLEYNEKKV-RDRIIGESFKRGL 381
Query: 201 VTKPISNNIIRLSPALNITEQELREGLDII 230
+ P + IR+ P L I+E+E ++GLDI+
Sbjct: 382 LLLPAGRSAIRVIPPLVISEEEAKQGLDIL 411
>3nx3_A Acoat, acetylornithine aminotransferase; csgid, structural
genomics, center for structural genomics O infectious
diseases; 1.80A {Campylobacter jejuni subsp}
Length = 395
Score = 251 bits (644), Expect = 8e-83
Identities = 69/218 (31%), Positives = 112/218 (51%), Gaps = 4/218 (1%)
Query: 19 NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHY 78
N CA ++E +QGE G + + K +R LC + ++L IADE+Q G+GR+GK A +
Sbjct: 177 NEKTCAIILESVQGEGGINPANKDFYKALRKLCDEKDILLIADEIQCGMGRSGKFFAYEH 236
Query: 79 EDVRPDIVILGKALSGGLYPISAVLADDEV-MGTLVPGTHGSTYGGNPLACKLAMTALDV 137
+ PDI+ KAL GL + A + + +V +L G HGSTYGGNPL C ++
Sbjct: 237 AQILPDIMTSAKALGCGL-SVGAFVINQKVASNSLEAGDHGSTYGGNPLVCAGVNAVFEI 295
Query: 138 ILEENMIENAYKMGEIFRSELRSRLSP-DIVPVVRGKGLLNAIVLDKSILEVYDVCIKMK 196
EE ++EN K+ L ++ D +G G + + LDKS+ +V V K +
Sbjct: 296 FKEEKILENVNKLTPYLEQSLDELINEFDFCKKRKGLGFMQGLSLDKSV-KVAKVIQKCQ 354
Query: 197 DAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTI 234
+ L+ N +R P L + ++ + E + + +
Sbjct: 355 ENALLLISCGENDLRFLPPLILQKEHIDEMSEKLRKAL 392
>3oks_A 4-aminobutyrate transaminase; ssgcid, transferase, seattle
structural genomics center for infectious disease; HET:
LLP; 1.80A {Mycobacterium smegmatis} PDB: 3r4t_A* 3q8n_A
Length = 451
Score = 253 bits (648), Expect = 1e-82
Identities = 79/219 (36%), Positives = 124/219 (56%), Gaps = 10/219 (4%)
Query: 21 NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYED 80
N+ A ++EPIQGE G +VP DG+L + C + +V+FIADEVQTG RTG + A +E
Sbjct: 227 NLAAVVIEPIQGEGGFIVPADGFLPTLLDWCRKNDVVFIADEVQTGFARTGAMFACEHEG 286
Query: 81 VRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILE 140
+ PD+++ K ++GGL P+SAV E+M + G TYGGNP+AC A+ ++ I
Sbjct: 287 IDPDLIVTAKGIAGGL-PLSAVTGRAEIMDSPHVSGLGGTYGGNPIACAAALATIETIES 345
Query: 141 ENMIENAYKMGEIFRSELRS-RLSPDIVPVVRGKGLLNAIVLDKSILEVYD------VCI 193
E ++ A ++ +I + L + D + VRG+G + A+ L K+ D +C
Sbjct: 346 EGLVARAQQIEKIMKDRLGRLQAEDDRIGDVRGRGAMIAMELVKAGTTEPDADLTKALCA 405
Query: 194 KMKDAGLVTKP--ISNNIIRLSPALNITEQELREGLDII 230
AG++ N++R P L+I + L EGLD++
Sbjct: 406 GAHAAGVIVLSCGTYGNVVRFLPPLSIGDDLLNEGLDVL 444
>2ord_A Acoat, acetylornithine aminotransferase; TM1785, acetylornithine
aminotransferase (EC 2.6.1.11) (ACOA structural
genomics; HET: MSE PLP; 1.40A {Thermotoga maritima MSB8}
PDB: 2e54_A*
Length = 397
Score = 250 bits (641), Expect = 2e-82
Identities = 76/220 (34%), Positives = 119/220 (54%), Gaps = 4/220 (1%)
Query: 19 NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHY 78
+ ++CA +EPIQGE+G V +L++ R LC +Y+ L + DEVQ G+GRTGKL A
Sbjct: 181 SEDVCAVFLEPIQGESGIVPATKEFLEEARKLCDEYDALLVFDEVQCGMGRTGKLFAYQK 240
Query: 79 EDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVI 138
V PD++ K L GG+ PI AV+ ++ L PG HG+T+GGNPLAC+ +T + +
Sbjct: 241 YGVVPDVLTTAKGLGGGV-PIGAVIVNERA-NVLEPGDHGTTFGGNPLACRAGVTVIKEL 298
Query: 139 LEENMIENAYKMGEIFRSELRSRLSP-DIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKD 197
+E +E + G +L+ D+V VRG GL+ I + + +V K +
Sbjct: 299 TKEGFLEEVEEKGNYLMKKLQEMKEEYDVVADVRGMGLMIGIQFREEV-SNREVATKCFE 357
Query: 198 AGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINTM 237
L+ P NN IR P L + E+ ++ + + +
Sbjct: 358 NKLLVVPAGNNTIRFLPPLTVEYGEIDLAVETLKKVLQGI 397
>1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A
{Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A*
1szu_A* 1szs_A*
Length = 426
Score = 250 bits (642), Expect = 4e-82
Identities = 73/220 (33%), Positives = 121/220 (55%), Gaps = 11/220 (5%)
Query: 21 NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYED 80
+I A ++EP+QGE G +++++RALC ++ ++ IADEVQ+G GRTG L A+
Sbjct: 199 DIAAIVIEPVQGEGGFYASSPAFMQRLRALCDEHGIMLIADEVQSGAGRTGTLFAMEQMG 258
Query: 81 VRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILE 140
V PD+ K+++GG P++ V EVM + PG G TY GNP+AC A+ L V +
Sbjct: 259 VAPDLTTFAKSIAGGF-PLAGVTGRAEVMDAVAPGGLGGTYAGNPIACVAALEVLKVFEQ 317
Query: 141 ENMIENAYKMGEIFRSELRS-RLSPDIVPVVRGKGLLNAIVLDK-------SILEVYDVC 192
EN+++ A +G+ + L + + VRG G + AI L + ++
Sbjct: 318 ENLLQKANDLGQKLKDGLLAIAEKHPEIGDVRGLGAMIAIELFEDGDHNKPDAKLTAEIV 377
Query: 193 IKMKDAGLVTKP--ISNNIIRLSPALNITEQELREGLDII 230
+ +D GL+ N++R+ L I + ++R+GL+II
Sbjct: 378 ARARDKGLILLSCGPYYNVLRILVPLTIEDAQIRQGLEII 417
>2eh6_A Acoat, acetylornithine aminotransferase; ARGD, structural genomics,
NPPSFA, national project on prote structural and
functional analyses; HET: PLP; 1.90A {Aquifex aeolicus}
Length = 375
Score = 247 bits (634), Expect = 2e-81
Identities = 69/216 (31%), Positives = 123/216 (56%), Gaps = 10/216 (4%)
Query: 19 NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHY 78
+ ++E IQGE G + +L K++ +C + +VL I DEVQTG+GRTG+ A +
Sbjct: 170 DEETAGIIIEVIQGEGGVNEASEDFLSKLQEICKEKDVLLIIDEVQTGIGRTGEFYAYQH 229
Query: 79 EDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVI 138
+++PD++ L K L GG+ PI A+LA +EV + PG+HGST+GGNPLAC+ +D +
Sbjct: 230 FNLKPDVIALAKGLGGGV-PIGAILAREEVAQSFTPGSHGSTFGGNPLACRAGTVVVDEV 288
Query: 139 LEENMIENAYKMGEIFRSELRSRLSPDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDA 198
E ++ + ++G F+ +L+ V+G+GL+ + L++ E D +K +
Sbjct: 289 --EKLLPHVREVGNYFKEKLKELGKGK----VKGRGLMLGLELER---ECKDYVLKALEK 339
Query: 199 GLVTKPISNNIIRLSPALNITEQELREGLDIIINTI 234
GL+ + ++R P L I ++ + + ++ +
Sbjct: 340 GLLINCTAGKVLRFLPPLIIQKEHIDRAISVLREIL 375
>4ffc_A 4-aminobutyrate aminotransferase (GABT); structural genomics,
niaid, national institute of allergy AN infectious
diseases; HET: LLP; 1.80A {Mycobacterium abscessus}
Length = 453
Score = 248 bits (635), Expect = 9e-81
Identities = 82/230 (35%), Positives = 122/230 (53%), Gaps = 10/230 (4%)
Query: 21 NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYED 80
++ A ++EPIQGE G +VP G+L + A S+ V+FIADEVQTG RTG A +E
Sbjct: 225 SLAAIIIEPIQGEGGFIVPAPGFLATLTAWASENGVVFIADEVQTGFARTGAWFASEHEG 284
Query: 81 VRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILE 140
+ PDIV + K ++GG+ P+SAV E+M + G G TYGGNP+ C A+ AL V+ E
Sbjct: 285 IVPDIVTMAKGIAGGM-PLSAVTGRAELMDAVYAGGLGGTYGGNPVTCAAAVAALGVMRE 343
Query: 141 ENMIENAYKMGEIFRSELRS-RLSPDIVPVVRGKGLLNAIVLDKSILEVYD------VCI 193
++ A + S L + DI+ VRG+G + AI + K D +
Sbjct: 344 LDLPARARAIEASVTSRLSALAEEVDIIGEVRGRGAMLAIEIVKPGTLEPDAALTKSIAA 403
Query: 194 KMKDAGLVTKP--ISNNIIRLSPALNITEQELREGLDIIINTINTMAAKK 241
+ G++ N+IRL P L I + L EG+ + + I A+ +
Sbjct: 404 EALSQGVLILTCGTFGNVIRLLPPLVIGDDLLDEGITALSDIIRAKASHQ 453
>1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase;
HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP:
c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A*
1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A*
1d7r_A* 1d7v_A* 1z3z_A*
Length = 433
Score = 242 bits (621), Expect = 6e-79
Identities = 63/224 (28%), Positives = 106/224 (47%), Gaps = 15/224 (6%)
Query: 21 NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYED 80
N+ AF+ EPI G + DGY+ ++ C +L I DE QTG+GRTG + A +
Sbjct: 203 NLAAFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRTGTMFACQRDG 262
Query: 81 VRPDIVILGKALSGGLYPISAVLADDEVMGTLVPG--THGSTYGGNPLACKLAMTALDVI 138
V PDI+ L K L G P++A++ + +T+ +PL + + LDV+
Sbjct: 263 VTPDILTLSKTLGAG-LPLAAIVTSAAIEERAHELGYLFYTTHVSDPLPAAVGLRVLDVV 321
Query: 139 LEENMIENAYKMGEIFRSELRSRLSP-DIVPVVRGKGLLNAI--VLDKSILE-----VYD 190
+ ++ A MG+ R L + D + VRG+GLL + V D+ E
Sbjct: 322 QRDGLVARANVMGDRLRRGLLDLMERFDCIGDVRGRGLLLGVEIVKDRRTKEPADGLGAK 381
Query: 191 VCIKMKDAGLVTKPIS----NNIIRLSPALNITEQELREGLDII 230
+ + + GL + + R++P L ++E E+ GL ++
Sbjct: 382 ITRECMNLGLSMNIVQLPGMGGVFRIAPPLTVSEDEIDLGLSLL 425
>3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1,
pyridoxal-5'-phosphate dependent racemase, pyrid
phosphate, isomerase; HET: PLP; 2.21A {Achromobacter
obae} PDB: 2zuk_A* 3dxw_A*
Length = 439
Score = 237 bits (608), Expect = 6e-77
Identities = 69/229 (30%), Positives = 119/229 (51%), Gaps = 12/229 (5%)
Query: 21 NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYED 80
+I A +EPIQ + G +VP DG+L+K +C + +L + DEV+ GL R+G+L +E
Sbjct: 201 SIGAAFIEPIQSDGGLIVPPDGFLRKFADICRAHGILVVCDEVKVGLARSGRLHCFEHEG 260
Query: 81 VRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILE 140
PDI++LGK L GGL P+SAV+A E++ T GNP++ + L+ I
Sbjct: 261 FVPDILVLGKGLGGGL-PLSAVIAPAEIL-DCASAFAMQTLHGNPISAAAGLAVLETIDR 318
Query: 141 ENMIENAYKMGEIFRSELRS-RLSPDIVPVVRGKGLLNAI--VLDKSILE-----VYDVC 192
+++ A + G + R L ++ +RG+GL + V D+ E +
Sbjct: 319 DDLPAMAERKGRLLRDGLSELAKRHPLIGDIRGRGLACGMELVCDRQSREPARAETAKLI 378
Query: 193 IKMKDAGLVTKP--ISNNIIRLSPALNITEQELREGLDIIINTINTMAA 239
+ GLV ++ N++ +P L ITE ++ + LD++ + ++A
Sbjct: 379 YRAYQLGLVVYYVGMNGNVLEFTPPLTITETDIHKALDLLDRAFSELSA 427
>1ohv_A 4-aminobutyrate aminotransferase; PLP-dependent enzyme, 4- AMIN
acid, antiepileptic drug target; HET: PLP; 2.3A {Sus
scrofa} SCOP: c.67.1.4 PDB: 1ohw_A* 1ohy_A*
Length = 472
Score = 228 bits (584), Expect = 5e-73
Identities = 49/218 (22%), Positives = 88/218 (40%), Gaps = 11/218 (5%)
Query: 17 KSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAI 76
K + +VEPIQ E G D + +K+R + ++ F+ DEVQTG G TGK A
Sbjct: 254 KKKKTVAGIIVEPIQSEGGDNHASDDFFRKLRDISRKHGCAFLVDEVQTGGGSTGKFWAH 313
Query: 77 HYEDVR--PDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTA 134
+ + D++ K + G P +T+ G+P L
Sbjct: 314 EHWGLDDPADVMTFSKKMMTGG-FFHKEEFRPN-----APYRIFNTWLGDPSKNLLLAEV 367
Query: 135 LDVILEENMIENAYKMGEIFRSELRSRLS--PDIVPVVRGKGLLNAIVLDKSILEVYDVC 192
+++I E+++ NA G++ + L + P + VRG+G + + +
Sbjct: 368 INIIKREDLLSNAAHAGKVLLTGLLDLQARYPQFISRVRGRGTFCSFDTPDESI-RNKLI 426
Query: 193 IKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDII 230
++ G++ + IR P L + L+I
Sbjct: 427 SIARNKGVMLGGCGDKSIRFRPTLVFRDHHAHLFLNIF 464
>3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr;
aminotransferase, csgid; 2.05A {Bacillus anthracis}
Length = 452
Score = 223 bits (571), Expect = 3e-71
Identities = 76/238 (31%), Positives = 116/238 (48%), Gaps = 21/238 (8%)
Query: 21 NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYED 80
I AF++EPI G ++ Y+K V C ++ L I+DEV G GRTGK D
Sbjct: 215 TIAAFIMEPIITGGGILMAPQDYMKAVHETCQKHGALLISDEVICGFGRTGKAFGFMNYD 274
Query: 81 VRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGT------HGSTYGGNPLACKLAMTA 134
V+PDI+ + K ++ P+SA E+ H +T+GGNP AC LA+
Sbjct: 275 VKPDIITMAKGITSAYLPLSATAVKREIYEAFKGKGEYEFFRHINTFGGNPAACALALKN 334
Query: 135 LDVILEENMIENAYKMGEIFRSELRSRLSP-DIVPVVRGKGLLNAI--VLDKSILEVYD- 190
L++I EN+IE + +MG + +L+ + +V +RGKGLL I V DK E D
Sbjct: 335 LEIIENENLIERSAQMGSLLLEQLKEEIGEHPLVGDIRGKGLLVGIELVNDKETKEPIDN 394
Query: 191 -----VCIKMKDAGLVTKPI------SNNIIRLSPALNITEQELREGLDIIINTINTM 237
V K+ GL+ NNI+ L+P L I+ +E+ + + + +
Sbjct: 395 DKIASVVNACKEKGLIIGRNGMTTAGYNNILTLAPPLVISSEEIAFVIGTLKTAMERI 452
>3nui_A Pyruvate transaminase; amino transferase, transferase; 2.00A
{Vibrio fluvialis}
Length = 478
Score = 220 bits (562), Expect = 1e-69
Identities = 65/237 (27%), Positives = 111/237 (46%), Gaps = 18/237 (7%)
Query: 21 NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYED 80
I F EP+ G G + P GY + + + +Y++ I+DEV G GRTG D
Sbjct: 230 TIAGFFAEPVMGAGGVIPPAKGYFQAILPILRKYDIPVISDEVICGFGRTGNTWGCVTYD 289
Query: 81 VRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGT-------HGSTYGGNPLACKLAMT 133
PD +I K L+ G +P+ AV+ E+ L HG T G+P+ C +A+
Sbjct: 290 FTPDAIISSKNLTAGFFPMGAVILGPELSKRLETAIEAIEEFPHGFTASGHPVGCAIALK 349
Query: 134 ALDVILEENMIENAYKMGEIFRSELRSRLSPDIVPVVRGKGLLNAI--VLDKSILEVYD- 190
A+DV++ E + EN ++ F L+ + RG G + A+ V DK+ +D
Sbjct: 350 AIDVVMNEGLAENVRRLAPRFEERLKHIAERPNIGEYRGIGFMWALEAVKDKASKTPFDG 409
Query: 191 -------VCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINTMAAK 240
+ D GL+ +P+ +++ L P +TE ++ E D + ++ + A+
Sbjct: 410 NLSVSERIANTCTDLGLICRPLGQSVV-LCPPFILTEAQMDEMFDKLEKALDKVFAE 465
>3i4j_A Aminotransferase, class III; structural GENOMICS,NYSGXRC, target
11246C, pyridoxal phosphate, PSI-2, protein structure
initiative; 1.70A {Deinococcus radiodurans}
Length = 430
Score = 215 bits (551), Expect = 2e-68
Identities = 70/241 (29%), Positives = 123/241 (51%), Gaps = 22/241 (9%)
Query: 21 NICAFMVEPIQG-EAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAI-HY 78
+ AFM EP+ G A+ P GY ++VR +C + ++FIADEV +G+GR G LA+ +
Sbjct: 190 TVAAFMAEPVVGASDAALAPAPGYYERVRDICDEAGIIFIADEVMSGMGRCGSPLALSRW 249
Query: 79 EDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGT----HGSTYGGNPLACKLAMTA 134
V PDI +LGK L+ G P++ +LA +V T++ G+ HG TY G+P++ ++
Sbjct: 250 SGVTPDIAVLGKGLAAGYAPLAGLLAAPQVYETVMGGSGAFMHGFTYAGHPVSVAAGLSV 309
Query: 135 LDVILEENMIENAYKMGEIFRSELRSRLSP-DIVPVVRGKGLLNAI-VLDKSILEVYD-- 190
LD++ E++ A + G + L++ + + VRG GLL + + D + + ++
Sbjct: 310 LDIVEREDLTGAAKERGAQLLAGLQALQARFPQMMQVRGTGLLLGVVLGDLATGQAFETP 369
Query: 191 -----VCIKMKDAGLVTKP-------ISNNIIRLSPALNITEQELREGLDIIINTINTMA 238
+ GL+T P + + L P L+IT E+ L ++ + +
Sbjct: 370 GIASRIGAAALKRGLITYPGSGAEPNGRGDHLLLGPPLSITAAEVDGLLALLAGALEDVL 429
Query: 239 A 239
Sbjct: 430 G 430
>3a8u_X Omega-amino acid--pyruvate aminotransferase; large pleated sheet,
transaminase, pyridox phosphate; HET: PLP; 1.40A
{Pseudomonas putida}
Length = 449
Score = 213 bits (545), Expect = 2e-67
Identities = 68/230 (29%), Positives = 111/230 (48%), Gaps = 14/230 (6%)
Query: 21 NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYED 80
NI A VEP+ G AG +VP +GYLK+ R +C+Q+N+L + DEV TG GRTG +
Sbjct: 219 NIAAVFVEPLAGSAGVLVPPEGYLKRNREICNQHNILLVFDEVITGFGRTGSMFGADSFG 278
Query: 81 VRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGT---------HGSTYGGNPLACKLA 131
V PD++ + K ++ G P+ AV+A E+ T + HG TY +P+AC
Sbjct: 279 VTPDLMCIAKQVTNGAIPMGAVIASTEIYQTFMNQPTPEYAVEFPHGYTYSAHPVACAAG 338
Query: 132 MTALDVILEENMIENAYKMGEIFRSELRSRLSPDIVPVVRGKGLLNAI--VLDKSILEV- 188
+ AL ++ +EN++++ ++ F L V +R GL AI V
Sbjct: 339 LAALCLLQKENLVQSVAEVAPHFEKALHGIKGAKNVIDIRNFGLAGAIQIAPRDGDAIVR 398
Query: 189 -YDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINTM 237
++ + + AG + + + P N Q+L D + +N +
Sbjct: 399 PFEAGMALWKAGFYVRFGGDTLQ-FGPTFNSKPQDLDRLFDAVGEVLNKL 447
>3gju_A Putative aminotransferase; pyridoxal phosphate, PLP-dependent
transferase-like fold, ST genomics, joint center for
structural genomics, JCSG; HET: MSE LLP PLP; 1.55A
{Mesorhizobium loti} PDB: 3fcr_A*
Length = 460
Score = 213 bits (546), Expect = 2e-67
Identities = 71/239 (29%), Positives = 121/239 (50%), Gaps = 19/239 (7%)
Query: 21 NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYED 80
I AF+ EPI G G V P GY +K++A+ +Y+VL +ADEV TG GR G + +
Sbjct: 221 TIAAFIGEPILGTGGIVPPPAGYWEKIQAVLKKYDVLLVADEVVTGFGRLGTMFGSDHYG 280
Query: 81 VRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGT-------HGSTYGGNPLACKLAMT 133
++PD++ + K L+ P+S V+ D V LV G+ HG TY +P+ +
Sbjct: 281 IKPDLITIAKGLTSAYAPLSGVIVADRVWQVLVQGSDKLGSLGHGWTYSAHPICVAAGVA 340
Query: 134 ALDVILEENMIENAYKMGEIFRSELRSRLSP-DIVPVVRGKGLLNAI--VLDKSILEVYD 190
L++I E +++ NA + G FR+EL + V VRG G+L A+ V DK +D
Sbjct: 341 NLELIDEMDLVTNAGETGAYFRAELAKAVGGHKNVGEVRGDGMLAAVEFVADKDDRVFFD 400
Query: 191 --------VCIKMKDAGLVTKPI-SNNIIRLSPALNITEQELREGLDIIINTINTMAAK 240
V + +G++ + + +I+ +P L +T ++ + + + ++ A
Sbjct: 401 ASQKIGPQVATALAASGVIGRAMPQGDILGFAPPLCLTREQADIVVSKTADAVKSVFAN 459
>4a6r_A Omega transaminase; transferase, PLP-binding enzyme, transaminase
fold type I; HET: TA8; 1.35A {Chromobacterium violaceum}
PDB: 4a6t_A* 4a6u_A 4a72_A* 4ah3_A*
Length = 459
Score = 208 bits (531), Expect = 4e-65
Identities = 65/235 (27%), Positives = 107/235 (45%), Gaps = 16/235 (6%)
Query: 21 NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYED 80
+ AF+ EPIQG G +VP Y ++ +C +Y+VL +ADEV G GRTG+ +
Sbjct: 219 KVAAFVGEPIQGAGGVIVPPATYWPEIERICRKYDVLLVADEVICGFGRTGEWFGHQHFG 278
Query: 81 VRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGT---HGSTYGGNPLACKLAMTALDV 137
+PD+ K LS G PI AV V L+ G HG TY G+P+ +A +
Sbjct: 279 FQPDLFTAAKGLSSGYLPIGAVFVGKRVAEGLIAGGDFNHGFTYSGHPVCAAVAHANVAA 338
Query: 138 ILEENMIENA-YKMGEIFRSELRSRLSP-DIVPVVRGKGLLNAI--VLDKSILEVYD--- 190
+ +E +++ +G + R S + V VRG G++ A V +K+ E++
Sbjct: 339 LRDEGIVQRVKDDIGPYMQKRWRETFSRFEHVDDVRGVGMVQAFTLVKNKAKRELFPDFG 398
Query: 191 -----VCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINTMAAK 240
L+ + ++I+ +P L +T E+ E L + +
Sbjct: 399 EIGTLCRDIFFRNNLIMRACGDHIV-SAPPLVMTRAEVDEMLAVAERCLEEFEQT 452
>3hmu_A Aminotransferase, class III; structural genomics, pyridoxal
phosphate, PSI-2, protein structure initiative; 2.10A
{Silicibacter pomeroyi}
Length = 472
Score = 208 bits (531), Expect = 5e-65
Identities = 62/234 (26%), Positives = 112/234 (47%), Gaps = 15/234 (6%)
Query: 21 NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYED 80
+ AF+ EP+QG G +V D Y +++ +C +Y++L IADEV G GRTG
Sbjct: 223 RVAAFIAEPVQGAGGVIVAPDSYWPEIQRICDKYDILLIADEVICGFGRTGNWFGTQTMG 282
Query: 81 VRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGT--HGSTYGGNPLACKLAMTALDVI 138
+RP I+ + K LS G PI + DEV + HG TY G+P+A +A+ L ++
Sbjct: 283 IRPHIMTIAKGLSSGYAPIGGSIVCDEVAHVIGKDEFNHGYTYSGHPVAAAVALENLRIL 342
Query: 139 LEENMIENAYKMGE-IFRSELRSRLSPDIVPVVRGKGLLNAI--VLDKSILEVYD----- 190
EEN++++ + + + + +V + G++ +I +K+ +
Sbjct: 343 EEENILDHVRNVAAPYLKEKWEALTDHPLVGEAKIVGMMASIALTPNKASRAKFASEPGT 402
Query: 191 ----VCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINTMAAK 240
+ L+ + + + +I +SP L IT E+ E I +++ A+
Sbjct: 403 IGYICRERCFANNLIMRHVGDRMI-ISPPLVITPAEIDEMFVRIRKSLDEAQAE 455
>3i5t_A Aminotransferase; pyridoxal 5'-phosphate, PSI-2, NYSGXRC, ST
genomics, protein structure initiative; HET: PLP; 2.00A
{Rhodobacter sphaeroides 2}
Length = 476
Score = 206 bits (526), Expect = 3e-64
Identities = 61/238 (25%), Positives = 116/238 (48%), Gaps = 19/238 (7%)
Query: 21 NICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAI-HYE 79
I AF+ EPI G ++P GY + +A+C ++++L+I+DEV TG GR G+ A
Sbjct: 221 TIAAFLAEPILASGGVIIPPAGYHARFKAICEKHDILYISDEVVTGFGRCGEWFASEKVF 280
Query: 80 DVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGT-------HGSTYGGNPLACKLAM 132
V PDI+ K ++ G P+ + + V+ + +G TY P+AC A+
Sbjct: 281 GVVPDIITFAKGVTSGYVPLGGLAISEAVLARISGENAKGSWFTNGYTYSNQPVACAAAL 340
Query: 133 TALDVILEENMIENAYKMGEIFRSELRSRLSPDIVPVVRGKGLLNAI--VLDKSILEVYD 190
++++ E +++ A +M + F + L S V R GL+ + +LD + +
Sbjct: 341 ANIELMEREGIVDQAREMADYFAAALASLRDLPGVAETRSVGLVGCVQCLLDPTRADGTA 400
Query: 191 --------VCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINTMAAK 240
+ + + GL+ +P+ + + +SP L I+ ++ E + I+ I ++A
Sbjct: 401 EDKAFTLKIDERCFELGLIVRPLGDLCV-ISPPLIISRAQIDEMVAIMRQAITEVSAA 457
>3dod_A Adenosylmethionine-8-amino-7-oxononanoate aminotr;
aminotransferase, biotin biosynthesis, pyridoxal
phosphate, adenosyl-L-methionine; HET: PLP; 1.90A
{Bacillus subtilis} PDB: 3drd_A 3du4_A*
Length = 448
Score = 204 bits (521), Expect = 9e-64
Identities = 75/237 (31%), Positives = 120/237 (50%), Gaps = 19/237 (8%)
Query: 21 NICAFMVEP-IQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYE 79
I A +E +QG +G +V +GYL VR LC+ Y+VL I DEV TG GRTGK+ A +E
Sbjct: 210 EIAALSIESMVQGASGMIVMPEGYLAGVRELCTTYDVLMIVDEVATGFGRTGKMFACEHE 269
Query: 80 DVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGT-------HGSTYGGNPLACKLAM 132
+V+PD++ GK ++GG PI+ A +++ HG +Y GN L C +A+
Sbjct: 270 NVQPDLMAAGKGITGGYLPIAVTFATEDIYKAFYDDYENLKTFFHGHSYTGNQLGCAVAL 329
Query: 133 TALDVILEENMIENAYKMGEIFRSELRSRLSPDIVPVVRGKGLLNAI--VLDKSILEVYD 190
L + EN++E + + L+ + V +R G + V K E Y
Sbjct: 330 ENLALFESENIVEQVAEKSKKLHFLLQDLHALPHVGDIRQLGFMCGAELVRSKETKEPYP 389
Query: 191 --------VCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINTMAA 239
V +KM++ G++T+P+ + I P L T +EL E + I+ I+ + +
Sbjct: 390 ADRRIGYKVSLKMRELGMLTRPLGDVIA-FLPPLASTAEELSEMVAIMKQAIHEVTS 445
>3tfu_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; transferase,
transferase-transferase inhibitor complex; HET: PL8;
1.94A {Mycobacterium tuberculosis} PDB: 3tft_A* 3bv0_A*
3lv2_A*
Length = 457
Score = 191 bits (488), Expect = 8e-59
Identities = 64/225 (28%), Positives = 110/225 (48%), Gaps = 8/225 (3%)
Query: 21 NICAFMVEPI-QGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYE 79
+ A +VEP+ QG G D YL +R +C +Y VL I DE+ TG GRTG L A +
Sbjct: 233 ELAAVVVEPVVQGAGGMRFHDPRYLHDLRDICRRYEVLLIFDEIATGFGRTGALFAADHA 292
Query: 80 DVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGT-----HGSTYGGNPLACKLAMTA 134
V PDI+ +GKAL+GG ++A L +V T+ G HG T+ NPLAC +++ +
Sbjct: 293 GVSPDIMCVGKALTGGYLSLAATLCTADVAHTISAGAAGALMHGPTFMANPLACAVSVAS 352
Query: 135 LDVILEENMIENAYKMGEIFRSELRSRLSPDIVPVVRGKGLLNAIVLDKSILEVYDVCIK 194
++++L ++ ++ + L + + V VR G + I D+ + ++
Sbjct: 353 VELLLGQDWRTRITELAAGLTAGLDTARALPAVTDVRVCGAIGVIECDRPV-DLAVATPA 411
Query: 195 MKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINTMAA 239
D G+ +P N++ P T E+ + ++ + +
Sbjct: 412 ALDRGVWLRPF-RNLVYAMPPYICTPAEITQITSAMVEVARLVGS 455
>1s0a_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; fold
type I, subclass II, homodimer; HET: LLP; 1.71A
{Escherichia coli} SCOP: c.67.1.4 PDB: 1qj5_A* 1mlz_A*
1qj3_A* 1mly_A* 1s06_A* 1s08_A* 1s09_A* 1s07_A* 1mgv_A*
1dty_A*
Length = 429
Score = 190 bits (486), Expect = 9e-59
Identities = 67/224 (29%), Positives = 107/224 (47%), Gaps = 14/224 (6%)
Query: 21 NICAFMVEPI-QGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYE 79
I A ++EPI QG G + +LK++R +C + +L IADE+ TG GRTGKL A +
Sbjct: 204 EIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTGKLFACEHA 263
Query: 80 DVRPDIVILGKALSGGLYPISAVLADDEV--------MGTLVPGTHGSTYGGNPLACKLA 131
++ PDI+ LGKAL+GG +SA L EV G + HG T+ GNPLAC A
Sbjct: 264 EIAPDILCLGKALTGGTMTLSATLTTREVAETISNGEAGCFM---HGPTFMGNPLACAAA 320
Query: 132 MTALDVILEENMIENAYKMGEIFRSELRSRLSPDIVPVVRGKGLLNAIVLDKSILEVYDV 191
+L ++ + + + R +L ++V VR G + + + + +
Sbjct: 321 NASLAILESGDWQQQVADIEVQLREQLAPARDAEMVADVRVLGAIGVVETTHPV-NMAAL 379
Query: 192 CIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTIN 235
+ G+ +P +I L P I Q+L+ + +
Sbjct: 380 QKFFVEQGVWIRPF-GKLIYLMPPYIILPQQLQRLTAAVNRAVQ 422
>4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase;
BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A
{Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A*
Length = 831
Score = 195 bits (498), Expect = 5e-58
Identities = 53/240 (22%), Positives = 91/240 (37%), Gaps = 20/240 (8%)
Query: 14 AKLKSNPNICAFMVEPI-QGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGK 72
+ ++ + ++ A ++EP+ G G + D + + + C + I DEV TG R G
Sbjct: 587 SGVRQSAHVGALIIEPVIHGAGGMHMVDPLFQRVLVNECRNRKIPVIFDEVFTGFWRLGV 646
Query: 73 LLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEV----MGTLVPGT--HGSTYGGNPL 126
+PDI K L+GG+ P++ LA D V G HG +Y + +
Sbjct: 647 ETTTELLGCKPDIACFAKLLTGGMVPLAVTLATDAVFDSFSGDSKLKALLHGHSYSAHAM 706
Query: 127 ACKLAMTALDVILEENMIENAYKMGEIFRSEL-RSRLSP----DIVPVVRGKGLLNAIVL 181
C A A+ + N G+ R + V V G L A+ L
Sbjct: 707 GCATAAKAIQWFKDPETNHNITSQGKTLRELWDEELVQQISSHSAVQRVVVIGTLFALEL 766
Query: 182 DKSI-------LEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTI 234
L + I +++ G+ T+P+ N I L + + R L + +
Sbjct: 767 KADASNSGYASLYAKSLLIMLREDGIFTRPLGNVIY-LMCGPCTSPEICRRLLTKLYKRL 825
>2cy8_A D-phgat, D-phenylglycine aminotransferase; structural genomics,
NPPSFA, national PROJ protein structural and functional
analyses; 2.30A {Pseudomonas stutzeri}
Length = 453
Score = 102 bits (257), Expect = 1e-25
Identities = 47/156 (30%), Positives = 73/156 (46%), Gaps = 11/156 (7%)
Query: 22 ICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTG--LGRTGKLLAIHYE 79
I AF+ EP+ G D +L++ L QY LFI DEV +G +G G
Sbjct: 202 IAAFIAEPVGSHFGVTPVSDSFLREGAELARQYGALFILDEVISGFRVGNHG---MQALL 258
Query: 80 DVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTY-----GGNPLACKLAMTA 134
DV+PD+ L KA +GGL P + ++VMG L G+ GNP+ A+ A
Sbjct: 259 DVQPDLTCLAKASAGGL-PGGILGGREDVMGVLSRGSDRKVLHQGTFTGNPITAAAAIAA 317
Query: 135 LDVILEENMIENAYKMGEIFRSELRSRLSPDIVPVV 170
+D ILE+++ +G+ R + + + +
Sbjct: 318 IDTILEDDVCAKINDLGQFAREAMNHLFARKGLNWL 353
>2yky_A Beta-transaminase; transferase; HET: PLP SFE; 1.69A {Mesorhizobium
SP} PDB: 2ykv_A* 2yku_A* 2ykx_A*
Length = 465
Score = 101 bits (255), Expect = 3e-25
Identities = 43/167 (25%), Positives = 63/167 (37%), Gaps = 11/167 (6%)
Query: 11 QVPAKLKSNPN-ICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTG-LG 68
LK + + A +VEP+ G G V + +L +RA S+ L I DEV T L
Sbjct: 222 GTADLLKRHGHDCAAILVEPMLGAGGCVPAERAFLDLLRAEASRCGALLIFDEVMTSRLS 281
Query: 69 RTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTY--G---G 123
G A + D+ LGK + GG+ A ++M P G+ G
Sbjct: 282 GGG---AQEMLGISADLTTLGKYIGGGM-SFGAFGGRRDLMERFDPARDGAFAHAGTFNN 337
Query: 124 NPLACKLAMTALDVILEENMIENAYKMGEIFRSELRSRLSPDIVPVV 170
N L AL I + G+ FR+ L + P+
Sbjct: 338 NILTMSAGHAALTQIYTRQAASDLSASGDRFRANLNRIAVENQAPLQ 384
>2epj_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA,
structural genomics, NPPSFA; HET: PMP; 1.70A {Aeropyrum
pernix} PDB: 2zsl_A* 2zsm_A*
Length = 434
Score = 94.5 bits (236), Expect = 1e-22
Identities = 44/168 (26%), Positives = 69/168 (41%), Gaps = 14/168 (8%)
Query: 11 QVPAKLKSNPN-ICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTG--L 67
+ + I +VEP+ AG + P +L ++ L + L I DEV TG L
Sbjct: 192 ALERVFAEYGDRIAGVIVEPVIANAGVIPPRREFLAALQRLSRESGALLILDEVVTGFRL 251
Query: 68 GRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTY--G--- 122
G G A Y ++ DI++LGK + GG P+ AV EVM L P G + G
Sbjct: 252 GLEG---AQGYFNIEGDIIVLGKIIGGGF-PVGAVAGSREVMSLLTPQ--GKVFNAGTFN 305
Query: 123 GNPLACKLAMTALDVILEENMIENAYKMGEIFRSELRSRLSPDIVPVV 170
+P+ + L + EE + + + + L +P
Sbjct: 306 AHPITMAAGLATLKALEEEPVYSVSREAAKALEEAASEVLDRTGLPYT 353
>3l44_A Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha beta class,
PLP-dependent transferase-like, bacillus A csgid,
porphyrin biosynthesis; HET: LLP; 2.05A {Bacillus
anthracis}
Length = 434
Score = 93.3 bits (233), Expect = 3e-22
Identities = 49/168 (29%), Positives = 73/168 (43%), Gaps = 14/168 (8%)
Query: 11 QVPAKLKSNPN-ICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTG--L 67
+ L + + A +VEPI G G V P G+L+KV L + L I DEV T
Sbjct: 191 TLKEALDKWGHEVAAILVEPIVGNFGIVEPKPGFLEKVNELVHEAGALVIYDEVITAFRF 250
Query: 68 GRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTY--G--- 122
G A V PD+ LGK + GGL PI A E+M + P G Y G
Sbjct: 251 MYGG---AQDLLGVTPDLTALGKVIGGGL-PIGAYGGKKEIMEQVAPL--GPAYQAGTMA 304
Query: 123 GNPLACKLAMTALDVILEENMIENAYKMGEIFRSELRSRLSPDIVPVV 170
GNP + + L+V+ +E + E ++G + + + + +
Sbjct: 305 GNPASMASGIACLEVLQQEGLYEKLDELGATLEKGILEQAAKHNIDIT 352
>3fq8_A Glutamate-1-semialdehyde 2,1-aminomutase; drug resistance,
microev0lution, integrated approach, chlorophyll
biosynthesis; HET: PMP; 2.00A {Synechococcus elongatus
pcc 6301} PDB: 2hp1_A* 2hoz_A* 2hoy_A* 2hp2_A* 3fq7_A*
2gsa_A* 3gsb_A* 4gsa_A* 3fqa_A* 2cfb_A*
Length = 427
Score = 92.5 bits (231), Expect = 6e-22
Identities = 48/168 (28%), Positives = 75/168 (44%), Gaps = 14/168 (8%)
Query: 11 QVPAKLKSNPN-ICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTG--L 67
V A NP I ++EPI G +G +VPD G+L+ +R + +++ L + DEV TG +
Sbjct: 188 AVKALFAENPGEIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVFDEVITGFRI 247
Query: 68 GRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTY--G--- 122
G V PD+ LGK + GGL P+ A E+M + P G Y G
Sbjct: 248 AYGG---VQEKFGVTPDLTTLGKIIGGGL-PVGAYGGKREIMQLVAPA--GPMYQAGTLS 301
Query: 123 GNPLACKLAMTALDVILEENMIENAYKMGEIFRSELRSRLSPDIVPVV 170
GNPLA + L+++ + E ++ + L +
Sbjct: 302 GNPLAMTAGIKTLELLRQPGTYEYLDQITKRLSDGLLAIAQETGHAAC 349
>4e77_A Glutamate-1-semialdehyde 2,1-aminomutase; structural genomics,
center for structural genomics of infec diseases, csgid,
porphyrin biosynthesis; 2.00A {Yersinia pestis}
Length = 429
Score = 91.8 bits (229), Expect = 9e-22
Identities = 51/168 (30%), Positives = 75/168 (44%), Gaps = 14/168 (8%)
Query: 11 QVPAKLKSNPN-ICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTG--L 67
V + P + +VEP+ G + P +L +RALC ++ L I DEV TG +
Sbjct: 189 SVRQAFEQYPQEVACIIVEPVAGNMNCIPPLPEFLPGLRALCDEFGALLIIDEVMTGFRV 248
Query: 68 GRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTY--G--- 122
G A Y V PD+ LGK + GG+ P+ A EVM L P G Y G
Sbjct: 249 ALAG---AQDYYHVIPDLTCLGKIIGGGM-PVGAFGGRREVMNALAPT--GPVYQAGTLS 302
Query: 123 GNPLACKLAMTALDVILEENMIENAYKMGEIFRSELRSRLSPDIVPVV 170
GNP+A L I + + E ++ + + LR + +P+V
Sbjct: 303 GNPIAMAAGFACLTEISQVGVYETLTELTDSLATGLRHAAKEENIPLV 350
>3k28_A Glutamate-1-semialdehyde 2,1-aminomutase 2; biosynthesis of
cofactors, prosthetic groups, and carriers, csgid,
cytoplasm, isomerase; HET: MSE PLP; 1.95A {Bacillus
anthracis str} PDB: 3bs8_A*
Length = 429
Score = 89.1 bits (222), Expect = 9e-21
Identities = 44/120 (36%), Positives = 56/120 (46%), Gaps = 17/120 (14%)
Query: 22 ICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTG--LGRTGKLLAIHYE 79
I +VEP+ G G V P G+L+ +R + Q L I DEV TG + Y
Sbjct: 201 IACVIVEPVAGNMGVVPPQPGFLEGLREVTEQNGALLIFDEVMTGFRVAYNC---GQGYY 257
Query: 80 DVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTY--G---GNPLACKLAMTA 134
V PD+ LGK + GGL P+ A E+M + P G Y G GNP LAM A
Sbjct: 258 GVTPDLTCLGKVIGGGL-PVGAYGGKAEIMRQVAPS--GPIYQAGTLSGNP----LAMAA 310
>2e7u_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA,
structural genomics, NPPSFA; HET: PMP; 1.90A {Thermus
thermophilus}
Length = 424
Score = 82.9 bits (206), Expect = 1e-18
Identities = 51/139 (36%), Positives = 68/139 (48%), Gaps = 15/139 (10%)
Query: 11 QVPAKLKSNPN-ICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTG--L 67
+ LK I A + EP+ G AG +VP + +LK + Y VL IADEV TG L
Sbjct: 188 GLREVLKRRGEEIAAIIFEPVVGNAGVLVPTEDFLKALHE-AKAYGVLLIADEVMTGFRL 246
Query: 68 GRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTY--G--- 122
G A ++PD+V LGK L GGL P +A E+M + P G Y G
Sbjct: 247 AFGG---ATELLGLKPDLVTLGKILGGGL-PAAAYAGRREIMEKVAPL--GPVYQAGTLS 300
Query: 123 GNPLACKLAMTALDVILEE 141
GNPLA + L+++ E
Sbjct: 301 GNPLAMAAGLATLELLEEN 319
>1bs0_A Protein (8-amino-7-oxonanoate synthase); PLP-dependent acyl-COA
synthase, biotin biosynthesis, 8-AMIN oxonanoate
synthase; 1.65A {Escherichia coli} SCOP: c.67.1.4 PDB:
2g6w_A* 1dje_A* 1dj9_A*
Length = 384
Score = 43.7 bits (104), Expect = 2e-05
Identities = 32/154 (20%), Positives = 58/154 (37%), Gaps = 30/154 (19%)
Query: 41 DGY---LKKVRALCSQYNVLFIADEVQ-TG-LGRTGKLLAIHYEDVRPDIVI--LGKAL- 92
DG L +++ + Q+N + D+ TG +G G+ + V+P++++ GK
Sbjct: 181 DGDSAPLAEIQQVTQQHNGWLMVDDAHGTGVIGEQGRGSC-WLQKVKPELLVVTFGKGFG 239
Query: 93 -SGGLYPISAVLADDEVMGTLVPGTHGSTY----GGNPLACKLAMTALDVILEENMIENA 147
SG AVL V L+ P + +L VI +
Sbjct: 240 VSGA-----AVLCSSTVADYLL--QFARHLIYSTSMPPAQAQALRASLAVIRSDEGDARR 292
Query: 148 YKMGE---IFRSELRS---RLSPD---IVPVVRG 172
K+ FR+ ++ L+ I P++ G
Sbjct: 293 EKLAALITRFRAGVQDLPFTLADSCSAIQPLIVG 326
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 41.8 bits (97), Expect = 1e-04
Identities = 48/263 (18%), Positives = 78/263 (29%), Gaps = 64/263 (24%)
Query: 16 LKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCS-QY-NVLFIADEVQT-------G 66
+ +PN + + + R L S Y N L + VQ
Sbjct: 207 YQIDPNWTS---RSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFN 263
Query: 67 LG-RTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTY---- 121
L + LL ++ V D + L S L DEV L+
Sbjct: 264 LSCKI--LLTTRFKQV-TDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPR 320
Query: 122 ---GGNPLACKLAMTALDVILEENMIEN-----AYKMGEIFRS--------ELRSR---L 162
NP L++ A + +N K+ I S E R L
Sbjct: 321 EVLTTNPRR--LSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRL 378
Query: 163 S--PDIVPVVRGKGLLNAIVLDKSIL-------EVYDVCIKMKDAGLVTKPISNNIIRLS 213
S P + I+L S++ +V V K+ LV K + I +
Sbjct: 379 SVFPPSAHI-------PTILL--SLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISI- 428
Query: 214 PALNITEQELREGL----DIIIN 232
P++ + + E I++
Sbjct: 429 PSIYLELKVKLENEYALHRSIVD 451
>1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase,
pyridoxal 5'-phosphate, monovalent cation binding site;
HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2
Length = 467
Score = 41.3 bits (96), Expect = 1e-04
Identities = 41/181 (22%), Positives = 62/181 (34%), Gaps = 22/181 (12%)
Query: 20 PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTG------LGRTGKL 73
NI A + AG LK+V + Q+ + + D + R K
Sbjct: 182 DNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHGIFVVMDSARFCENAYFIKARDPKY 241
Query: 74 LAIHYEDVRPDIVILGKALS-----GGLYPISAVLA--DDEVMGT-----LVPGTHGSTY 121
++V D+ AL+ L I ++A D+E + T VP TY
Sbjct: 242 KNATIKEVIFDMYKYADALTMSAKKDPLLNIGGLVAIRDNEEIFTLARQRCVPMEGFVTY 301
Query: 122 GGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELRSRLSPDIVPVVRGKGLLNAIVL 181
GG M A+ LEE E L RL +P+ G +A+ +
Sbjct: 302 GGLA---GRDMAAMVQGLEEGTEEEYLHYRIGQVKYLGDRLREAGIPIQYPTG-GHAVFV 357
Query: 182 D 182
D
Sbjct: 358 D 358
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 40.4 bits (94), Expect = 4e-04
Identities = 36/216 (16%), Positives = 72/216 (33%), Gaps = 59/216 (27%)
Query: 68 GRTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLA 127
G GK + +Y + + ++ GK + +++ + + T+
Sbjct: 1678 GEKGKRIRENYSAMIFETIVDGKLKT------------EKIFKEINEHSTSYTFRSEKGL 1725
Query: 128 CKL------AMTALDV----ILEENMIENAYKM------GEIFRSELRSR---LSP-DIV 167
A+T ++ L+ + A GE + L S +S +V
Sbjct: 1726 LSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHSLGEY--AALASLADVMSIESLV 1783
Query: 168 PVV--RGKGLLNAIVLDKSILEVYDVCIKMKDAGLVTKPISNNIIR-------------L 212
VV RG + A+ D+ Y + + G V S ++ +
Sbjct: 1784 EVVFYRGMTMQVAVPRDELGRSNYGMI--AINPGRVAASFSQEALQYVVERVGKRTGWLV 1841
Query: 213 SPA-LNI-TEQ-----ELREGLDIIINTINTMAAKK 241
N+ +Q +LR LD + N +N + +K
Sbjct: 1842 EIVNYNVENQQYVAAGDLR-ALDTVTNVLNFIKLQK 1876
Score = 38.1 bits (88), Expect = 0.002
Identities = 39/213 (18%), Positives = 66/213 (30%), Gaps = 84/213 (39%)
Query: 33 EAGAVVPDD-------G-YLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPD 84
G + D G Y AL S +V+ I V +++ R
Sbjct: 1749 SKGLIPADATFAGHSLGEY----AALASLADVMSIESLV--------EVVFY-----R-- 1789
Query: 85 IVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMI 144
G + P + + M + PG +A + AL ++E
Sbjct: 1790 ----GMTMQ-VAVPRDELGRSNYGMIAINPGR---------VAASFSQEALQYVVE---- 1831
Query: 145 ENAYKMGEIFRSELRSRLSPDIV----P----VVRGKGLLNAIVLDK--SILEVYDVCIK 194
+ G + + IV V G L A LD ++L IK
Sbjct: 1832 RVGKRTGWL--------VE--IVNYNVENQQYVAAGD--LRA--LDTVTNVLNF----IK 1873
Query: 195 MKDAGLVTKPISNNIIRLSPALNITEQELREGL 227
+ + I +II L +L++ +E+ L
Sbjct: 1874 L-------QKI--DIIELQKSLSL--EEVEGHL 1895
>1m32_A 2-aminoethylphosphonate-pyruvate aminotransferase; PLP-dependent
aminotransferase fold; HET: PLP; 2.20A {Salmonella
typhimurium} SCOP: c.67.1.3
Length = 366
Score = 39.5 bits (93), Expect = 6e-04
Identities = 21/102 (20%), Positives = 40/102 (39%), Gaps = 17/102 (16%)
Query: 6 PVKSKQVPAKLKSNPNICAFMVEPIQGE--AGAVVPDDGYLKKVRALCSQYNVLFIADEV 63
+ + A L ++P I + + E G + P + +V AL +Y +I D +
Sbjct: 116 RPDVQAIDAILNADPTISHIAM--VHSETTTGMLNP----IDEVGALAHRYGKTYIVDAM 169
Query: 64 QTGLGRTGKLLAIHYEDVRPDIVILG--KALSG--GLYPISA 101
+ G G + + + D +I K + G G + A
Sbjct: 170 -SSFG--G--IPMDIAALHIDYLISSANKCIQGVPGFAFVIA 206
>1fc4_A 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino-3-ketobutyrate
COA ligase, pyridoxal phosphate, COEN transferase,
structural genomics; HET: PLP; 2.00A {Escherichia coli}
SCOP: c.67.1.4
Length = 401
Score = 37.9 bits (89), Expect = 0.002
Identities = 37/153 (24%), Positives = 62/153 (40%), Gaps = 27/153 (17%)
Query: 41 DGY---LKKVRALCSQYNVLFIADEVQ-TG-LGRTGKLLAIHYE-DVRPDIVI--LGKAL 92
DG LK V L +Y+ L + D+ G +G G+ + + R DI+ LGKAL
Sbjct: 190 DGVIANLKGVCDLADKYDALVMVDDSHAVGFVGENGRGSHEYCDVMGRVDIITGTLGKAL 249
Query: 93 SG--GLYPISAVLADDEVMGTLVPGTHGSTY----GGNPLACKLAMTALDVILEEN-MIE 145
G G Y A EV+ L Y P ++ L+++ + + +
Sbjct: 250 GGASGGY----TAARKEVVEWLR--QRSRPYLFSNSLAPAIVAASIKVLEMVEAGSELRD 303
Query: 146 NAYKMGEIFRSELRS---RLSPD---IVPVVRG 172
+ FR ++ + L+ I+PV+ G
Sbjct: 304 RLWANARQFREQMSAAGFTLAGADHAIIPVMLG 336
>3tqx_A 2-amino-3-ketobutyrate coenzyme A ligase; energy metabolism,
transferase; HET: PLP; 2.30A {Coxiella burnetii}
Length = 399
Score = 37.6 bits (88), Expect = 0.002
Identities = 38/155 (24%), Positives = 62/155 (40%), Gaps = 30/155 (19%)
Query: 41 DGY---LKKVRALCSQYNVLFIADEVQ-TG-LGRTGKLLAIHY--EDVRPDIVI--LGKA 91
DG LK + L +YN L + D+ G +G G+ + D R DI+ LGKA
Sbjct: 188 DGIIADLKSICDLADKYNALVMVDDSHAVGFIGENGRGTPEYCGVAD-RVDILTGTLGKA 246
Query: 92 LSG--GLYPISAVLADDEVMGTLVPGTHGSTY----GGNPLACKLAMTALDVILEEN--M 143
L G G Y E++ L Y P+ ++ L+++ E +
Sbjct: 247 LGGASGGY----TSGHKEIIEWLR--NRSRPYLFSNTVAPVIVATSLKVLELLKTEGPQL 300
Query: 144 IENAYKMGEIFRSELRS---RLSPD---IVPVVRG 172
+ + FR+ + +L P I+PV+ G
Sbjct: 301 RKQLQENSRYFRAGMEKLGFQLVPGNHPIIPVMLG 335
>2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A
{Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A*
Length = 392
Score = 37.2 bits (87), Expect = 0.003
Identities = 25/101 (24%), Positives = 39/101 (38%), Gaps = 17/101 (16%)
Query: 6 PVKSKQVPAKLKSNPNICAFMVEPIQGE--AGAVVPDDGYLKKVRALCSQYNVLFIADEV 63
+ + V LK++P I V + +G + P + + AL S + I D V
Sbjct: 119 AIDPQAVADMLKAHPEITVVSV--CHHDTPSGTINP----IDAIGALVSAHGAYLIVDAV 172
Query: 64 QTGLGRTGKLLAIHYEDVRPDIVILG--KALSG--GLYPIS 100
+ G H ED + DI + G K L GL +
Sbjct: 173 -SSFGGM----KTHPEDCKADIYVTGPNKCLGAPPGLTMMG 208
>2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase;
PLP, structural genomics, NPPSFA; HET: PLP; 1.90A
{Pyrococcus horikoshii}
Length = 386
Score = 36.8 bits (86), Expect = 0.004
Identities = 21/102 (20%), Positives = 40/102 (39%), Gaps = 17/102 (16%)
Query: 6 PVKSKQVPAKLKSNPNICAFMVEPIQGE--AGAVVPDDGYLKKVRALCSQYNVLFIADEV 63
VK + + L+ NP++ A + E G + P L ++ + +++ L D V
Sbjct: 131 AVKPEDLDDALRKNPDVEAVTI--TYNETSTGVLNP----LPELAKVAKEHDKLVFVDAV 184
Query: 64 QTGLGRTGKLLAIHYEDVRPDIVILG--KALSG--GLYPISA 101
+ +G I ++ D+V KA GL +
Sbjct: 185 -SAMGGA----DIKFDKWGLDVVFSSSQKAFGVPPGLAIGAF 221
>3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type
I, acyltransferase, PY phosphate; HET: PLP; 2.30A
{Sphingobacterium multivorum}
Length = 398
Score = 34.8 bits (81), Expect = 0.021
Identities = 30/154 (19%), Positives = 62/154 (40%), Gaps = 30/154 (19%)
Query: 41 DGY---LKKVRALCSQYNVLFIADEV-QTG-LGRTGKLLAIHY--EDVRPDIVI--LGKA 91
+G L ++ ++ ++++ + D+ G +G G A H+ D D+++ K+
Sbjct: 186 EGDIVNLPELTSIANEFDAAVMVDDAHSLGVIGHKGAGTASHFGLND-DVDLIMGTFSKS 244
Query: 92 L--SGGLYPISAVLADDEVMGTLVPGTHGSTY----GGNPLACKLAMTALDVILEEN-MI 144
L GG V D +V+ L + + P + + AL++I E I
Sbjct: 245 LASLGGF-----VAGDADVIDFLK--HNARSVMFSASMTPASVASTLKALEIIQNEPEHI 297
Query: 145 ENAYKMGEIFRSELRSR---LSPD---IVPVVRG 172
E +K + +++L L I+P+
Sbjct: 298 EKLWKNTDYAKAQLLDHGFDLGATESPILPIFIR 331
>3kki_A CAI-1 autoinducer synthase; quorum sensing, CQSA, P virulence,
acyltransferase, aminotransferase, pyridoxal PHO
transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB:
3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A
Length = 409
Score = 34.5 bits (80), Expect = 0.023
Identities = 24/154 (15%), Positives = 44/154 (28%), Gaps = 31/154 (20%)
Query: 41 DGY---LKKVRALCSQYNVLFIADEVQ-TG-LGRTGKLLAIHYEDV--RPDIVI--LGKA 91
G L ++ + ++ + DE G G G L + + L K
Sbjct: 199 LGTIAPLAELVNISKEFGCALLVDESHSLGTHGPNGAGLL-AELGLTREVHFMTASLAKT 257
Query: 92 L--SGGLYPISAVLADDEVMGTLVPGTHGSTY----GGNPLACKLAMTALDVILEEN-MI 144
G A+ ++EV + P T L++I +
Sbjct: 258 FAYRAG-----AIWCNNEVNRCVP--FISYPAIFSSTLLPYEAAGLETTLEIIESADNRR 310
Query: 145 ENAYKMGEIFRSELRSR------LSPDIVPVVRG 172
++ +M R L S I+ + G
Sbjct: 311 QHLDRMARKLRIGLSQLGLTIRSESQ-IIGLETG 343
>1vjo_A Alanine--glyoxylate aminotransferase; 17130350, ALR1004, STR
genomics, JCSG, PSI, protein structure initiative, joint
CE structural genomics; HET: PLP; 1.70A {Nostoc SP}
SCOP: c.67.1.3
Length = 393
Score = 33.8 bits (78), Expect = 0.043
Identities = 21/107 (19%), Positives = 35/107 (32%), Gaps = 28/107 (26%)
Query: 6 PVKSKQVPAKLKSNPNICAFMVEPIQGE--AGAVVPDDGYLKKVRALCSQYNVLFIADEV 63
+++ L+++ +V E GA P L+ V LC ++ L + D V
Sbjct: 145 VFSLEELRTALETHRPAILALV---HAETSTGARQP----LEGVGELCREFGTLLLVDTV 197
Query: 64 QTGLGRTGKLLAIHYEDVRP-----DIVILG--KALSG--GLYPISA 101
T LG + D+ K L G P +
Sbjct: 198 -TSLGG---------VPIFLDAWGVDLAYSCSQKGLGCSPGASPFTM 234
>3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative
aminotransferase, structural genomics, center for
structural genomics, JCSG; HET: PLP; 1.65A {Mus
musculus} PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A*
Length = 393
Score = 33.4 bits (77), Expect = 0.056
Identities = 25/107 (23%), Positives = 36/107 (33%), Gaps = 28/107 (26%)
Query: 6 PVKSKQVPAKLKSNPNICAFMVEPIQGE--AGAVVPDDGYLKKVRALCSQYNVLFIADEV 63
++V L + + F+V GE G V P L LC +Y L + D V
Sbjct: 134 HYTLQEVEEGLAQHKPVLLFLV---HGESSTGVVQP----LDGFGELCHRYQCLLLVDSV 186
Query: 64 QTGLGRTGKLLAIHYEDVRP-----DIVILG--KALSG--GLYPISA 101
LG + DI+ K L+ G+ IS
Sbjct: 187 -ASLGG---------VPIYMDQQGIDIMYSSSQKVLNAPPGISLISF 223
>3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP;
2.58A {Klebsiella pneumoniae}
Length = 411
Score = 33.4 bits (77), Expect = 0.057
Identities = 24/102 (23%), Positives = 35/102 (34%), Gaps = 18/102 (17%)
Query: 6 PVKSKQVPAKLKSNPNICAFMVEPIQGE--AGAVVPDDGYLKKVRALCSQYNVLFIADEV 63
QV +K V QG+ + P L ++ +C +Y+ LF D
Sbjct: 124 VFTPDQVEDAVKRIRPRLLLTV---QGDTSTTMLQP----LAELGEICRRYDALFYTDAT 176
Query: 64 QTGLGRTGKLLAIHYEDVRPDIVILG--KALSG--GLYPISA 101
LG + + D V G K L G G PI+
Sbjct: 177 -ASLGGN----PLETDVWGLDAVSAGMQKCLGGPSGTSPITL 213
>2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme,
pyridoxal-5'-phosphate, domain lyase; 1.85A {Citrobacter
freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 2yct_A* 1tpl_A
2tpl_A* 2ycn_A* 2yhk_A* 2ycp_A* 1c7g_A*
Length = 456
Score = 33.2 bits (75), Expect = 0.073
Identities = 36/180 (20%), Positives = 58/180 (32%), Gaps = 21/180 (11%)
Query: 20 PNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQT-GLGRTGKLLAIHY 78
NI + AG ++ VR L + + D + K +
Sbjct: 173 ENIAYICLAVTVNLAGGQPVSMANMRAVRELTEAHGIKVFYDATRCVENAYFIKEQEQGF 232
Query: 79 EDVRP-DIVILGKALS---------GGLYPI-SAVLADDEVMG----TLVPGTHGS-TYG 122
E+ +IV + + L I + +D+ M LV G +YG
Sbjct: 233 ENKSIAEIVHEMFSYADGCTMSGKKDCLVNIGGFLCMNDDEMFSSAKELVVVYEGMPSYG 292
Query: 123 GNPLACKLAMTALDVILEENMIENAYKMGEIFRSELRSRLSPDIVPVVRGKGLLNAIVLD 182
G M A+ + L E M + L +L VP+V G +A+ LD
Sbjct: 293 GL---AGRDMEAMAIGLREAMQYEYIEHRVKQVRYLGDKLKAAGVPIVEPVG-GHAVFLD 348
>2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas
paucimobilis} PDB: 2w8u_A* 2w8w_A* 2xbn_A* 2w8j_A*
2w8v_A* 2jg2_A* 2jgt_A 2x8u_A*
Length = 427
Score = 33.0 bits (76), Expect = 0.078
Identities = 24/156 (15%), Positives = 53/156 (33%), Gaps = 32/156 (20%)
Query: 41 DGY---LKKVRALCSQYNVLFIADEV-QTG-LGRTGKLLAIHYEDV--RPDIVI--LGKA 91
G LK++ A+ ++ + + DE G G G+ + + + + D V+ K+
Sbjct: 207 LGDIAPLKEMVAVAKKHGAMVLVDEAHSMGFFGPNGRGVY-EAQGLEGQIDFVVGTFSKS 265
Query: 92 L--SGGLYPISAVLADDEVMGTLVPGTHGSTY----GGNPLACKLAMTALDVILEEN-MI 144
+ GG + V+++ + Y P A T++ ++ +
Sbjct: 266 VGTVGG-F----VVSNHPKFEAVR--LACRPYIFTASLPPSVVATATTSIRKLMTAHEKR 318
Query: 145 ENAYKMGEIFRSELRSR-----LSPD---IVPVVRG 172
E + L++ IV V+
Sbjct: 319 ERLWSNARALHGGLKAMGFRLGTETCDSAIVAVMLE 354
>2yrr_A Aminotransferase, class V; structural genomics, NPPSFA, national
PROJ protein structural and functional analyses; HET:
PLP; 1.86A {Thermus thermophilus} PDB: 2yri_A*
Length = 353
Score = 32.6 bits (75), Expect = 0.10
Identities = 29/102 (28%), Positives = 37/102 (36%), Gaps = 18/102 (17%)
Query: 6 PVKSKQVPAKLKSNPNICAFMVEPIQGE--AGAVVPDDGYLKKVRALCSQYNVLFIADEV 63
PV + V LK +V GE G + P + + AL + LF D V
Sbjct: 110 PVDPEAVARALKRRRYRMVALV---HGETSTGVLNP----AEAIGALAKEAGALFFLDAV 162
Query: 64 QTGLGRTGKLLAIHYEDVRPDIVILG--KALSG--GLYPISA 101
T LG + D G K LS GL PI+A
Sbjct: 163 -TTLGML----PFSMRAMGVDYAFTGSQKCLSAPPGLAPIAA 199
>2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein,
PLP-dependent transferase; HET: LLP; 1.75A {Aedes
aegypti} PDB: 2hui_A* 2huu_A*
Length = 393
Score = 31.9 bits (73), Expect = 0.16
Identities = 25/107 (23%), Positives = 38/107 (35%), Gaps = 28/107 (26%)
Query: 6 PVKSKQVPAKLKSNPNICAFMVEPIQGE--AGAVVPDDGYLKKVRALCSQYNVLFIADEV 63
+ ++ L + F+ QG+ G + L+ V ALC Q+N L I D V
Sbjct: 130 SLSLDEIRDALLIHKPSVLFLT---QGDSSTGVLQG----LEGVGALCHQHNCLLIVDTV 182
Query: 64 QTGLGRTGKLLAIHYEDVRP-----DIVILG--KALSG--GLYPISA 101
LG + D + G K L G+ P+S
Sbjct: 183 -ASLGG---------APMFMDRWEIDAMYTGSQKVLGAPPGITPVSF 219
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit
DNA-dependent RNA polymerase in mitochondria,
transferase; 2.50A {Homo sapiens}
Length = 1134
Score = 31.7 bits (70), Expect = 0.24
Identities = 10/69 (14%), Positives = 24/69 (34%), Gaps = 3/69 (4%)
Query: 132 MTALDVILEENMIENAYKMGEIFRSELRSRLSPDIVPVVRGKGLLNAIVLDKSILEVYDV 191
+ L + + A+ + + + + R + ++ + E+ V
Sbjct: 131 LAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNA---VMLGWARQGAFKELVYV 187
Query: 192 CIKMKDAGL 200
+KDAGL
Sbjct: 188 LFMVKDAGL 196
>2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway,
transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP:
c.67.1.3 PDB: 2ch2_A*
Length = 396
Score = 30.7 bits (70), Expect = 0.40
Identities = 24/106 (22%), Positives = 38/106 (35%), Gaps = 28/106 (26%)
Query: 6 PVKSKQVPAKLKSNPNICAFMVEPIQGE--AGAVVPDDGYLKKVRALCSQYNVLFIADEV 63
P + + ++ + C F+ G+ +G + P L+ V +C Q++ L I D V
Sbjct: 129 PFSLETLARAIELHQPKCLFLT---HGDSSSGLLQP----LEGVGQICHQHDCLLIVDAV 181
Query: 64 QTGLGRTGKLLAIHYEDVRP-----DIVILG--KALSG--GLYPIS 100
L D V G K L G+ PIS
Sbjct: 182 -ASLCG---------VPFYMDKWEIDAVYTGAQKVLGAPPGITPIS 217
>4dq6_A Putative pyridoxal phosphate-dependent transferas; structural
genomics, niaid, national institute of allergy AN
infectious diseases; HET: PLP; 1.50A {Clostridium
difficile} PDB: 4dgt_A*
Length = 391
Score = 30.6 bits (70), Expect = 0.47
Identities = 9/20 (45%), Positives = 15/20 (75%)
Query: 44 LKKVRALCSQYNVLFIADEV 63
LKK+ +C ++NV I+DE+
Sbjct: 186 LKKLGDICLKHNVKIISDEI 205
>1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain,
small C-TER domain, open alpha-beta structure.,
transferase; HET: PLP; 2.50A {Escherichia coli} SCOP:
c.67.1.3
Length = 390
Score = 30.6 bits (70), Expect = 0.48
Identities = 7/20 (35%), Positives = 13/20 (65%)
Query: 44 LKKVRALCSQYNVLFIADEV 63
L+ + LC ++ V I+DE+
Sbjct: 184 LEIMADLCERHGVRVISDEI 203
>3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative
PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A
{Lactobacillus delbrueckii subsp}
Length = 391
Score = 30.5 bits (70), Expect = 0.50
Identities = 8/20 (40%), Positives = 16/20 (80%)
Query: 44 LKKVRALCSQYNVLFIADEV 63
+K++ LC+++ VL I+DE+
Sbjct: 182 VKRIAELCAKHQVLLISDEI 201
>1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate;
HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3
PDB: 1c7o_A*
Length = 399
Score = 30.6 bits (70), Expect = 0.50
Identities = 4/20 (20%), Positives = 14/20 (70%)
Query: 44 LKKVRALCSQYNVLFIADEV 63
L+K++ + + +++ +DE+
Sbjct: 186 LQKIKDIVLKSDLMLWSDEI 205
>2bwn_A 5-aminolevulinate synthase; tetrapyrrole biosynthesis, heme
biosynthesis, pyridoxal PHOS dependent, transferase,
acyltransferase; HET: LLP; 2.1A {Rhodobacter capsulatus}
SCOP: c.67.1.4 PDB: 2bwo_A* 2bwp_A*
Length = 401
Score = 30.3 bits (69), Expect = 0.51
Identities = 19/66 (28%), Positives = 29/66 (43%), Gaps = 12/66 (18%)
Query: 41 DGY---LKKVRALCSQYNVLFIADEVQ-TGL-GRTGKLLAIHYEDV--RPDIVI--LGKA 91
DG +K++ + ++ L DEV G+ G G +A + + R DI L KA
Sbjct: 191 DGDFGPIKEICDIAEEFGALTYIDEVHAVGMYGPRGAGVA-ERDGLMHRIDIFNGTLAKA 249
Query: 92 L--SGG 95
GG
Sbjct: 250 YGVFGG 255
>3b1d_A Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococcus anginosus}
PDB: 3b1c_A* 3b1e_A*
Length = 392
Score = 30.2 bits (69), Expect = 0.53
Identities = 6/20 (30%), Positives = 16/20 (80%)
Query: 44 LKKVRALCSQYNVLFIADEV 63
L+++ LC +++V+ ++DE+
Sbjct: 186 LEQIGHLCQKHHVILVSDEI 205
>3kax_A Aminotransferase, classes I and II; PLP, C-S lyase, transf
structural genomics, center for structural genomics of
INFE diseases, csgid; HET: LLP MSE PLP; 1.70A {Bacillus
anthracis str} PDB: 3t32_A*
Length = 383
Score = 30.2 bits (69), Expect = 0.53
Identities = 10/20 (50%), Positives = 17/20 (85%)
Query: 44 LKKVRALCSQYNVLFIADEV 63
L K+ +LC++YNV+ +ADE+
Sbjct: 178 LTKLGSLCTKYNVIVVADEI 197
>3l8a_A METC, putative aminotransferase, probable beta-cystathi;
beta-cystathionase, lyase; HET: PLP; 1.54A
{Streptococcus mutans}
Length = 421
Score = 30.2 bits (69), Expect = 0.54
Identities = 7/20 (35%), Positives = 14/20 (70%)
Query: 44 LKKVRALCSQYNVLFIADEV 63
L K+ LC ++ V+ ++DE+
Sbjct: 216 LIKIAELCKKHGVILVSDEI 235
>3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase;
PLP-dependent transferase-like fold, structural
genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae}
Length = 377
Score = 30.2 bits (69), Expect = 0.55
Identities = 5/20 (25%), Positives = 11/20 (55%)
Query: 44 LKKVRALCSQYNVLFIADEV 63
L ++ L +Y+ + DE+
Sbjct: 172 LNELCDLAHRYDARVLVDEI 191
>3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent
enzymes, purine metabolism transaminases,
aminotransferases; HET: PLP; 2.06A {Bacillus subtilis}
Length = 416
Score = 30.0 bits (68), Expect = 0.64
Identities = 19/67 (28%), Positives = 26/67 (38%), Gaps = 19/67 (28%)
Query: 44 LKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRP-----DIVILG--KALSG-- 94
LK + C + LFI D V +G +V+ D I G K LS
Sbjct: 155 LKAIGEACRTEDALFIVDAV-ATIGG---------CEVKVDEWKIDAAIGGTQKCLSVPS 204
Query: 95 GLYPISA 101
G+ PI+
Sbjct: 205 GMAPITY 211
>3f0h_A Aminotransferase; RER070207000802, structural genomics, JOIN for
structural genomics, JCSG; HET: MSE LLP; 1.70A
{Eubacterium rectale}
Length = 376
Score = 29.9 bits (68), Expect = 0.72
Identities = 19/142 (13%), Positives = 43/142 (30%), Gaps = 33/142 (23%)
Query: 44 LKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILG--KALSG--GLYPI 99
+ C + N+ F+ D V + + + D++I G K L+ G+
Sbjct: 163 TMMIGEFCKKNNMFFVCDCV-SAFL----ADPFNMNECGADVMITGSQKVLACPPGI--- 214
Query: 100 SAVLADDEVMGTLVPGTHGSTY-----------GGN-----PLACKLAM-TALDVILEEN 142
S ++ + + + Y G + L + L I +
Sbjct: 215 SVIVLAPRGVERVEKSKVRTMYFDLKDALKNQERGQTPFTPAVGILLQINERLKEIKKHG 274
Query: 143 MIENAYK----MGEIFRSELRS 160
+ FR++++
Sbjct: 275 GADAEVARIASQAADFRAKIKD 296
>2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine
biosynthesis, seven-stranded BETE-strand, PYR
5'-phosphate; HET: PLP; 2.50A {Methanococcus
maripaludis} SCOP: c.67.1.9
Length = 456
Score = 29.3 bits (65), Expect = 1.3
Identities = 20/184 (10%), Positives = 48/184 (26%), Gaps = 15/184 (8%)
Query: 14 AKLKSNPNICAFMVEPIQGEAGAV---VPDDGYLKKVRALCSQYNVLFIADEVQTGLGRT 70
K N + DD + ++ +C Y++ I +
Sbjct: 224 KKEIELGNRPC-----VLSTLTFFPPRNSDD--IVEIAKICENYDIPHIINGAYAIQNNY 276
Query: 71 GKLLAIHYEDVRPDIV--ILGKALSGGLYPISAVLA-DDEVMGTLVPGTHGSTYGGNPLA 127
R D V K L V + D E + + G +
Sbjct: 277 YLEKLKKAFKYRVDAVVSSSDKNL-LTPIGGGLVYSTDAEFIKEISLSYPGRASATPVVN 335
Query: 128 CKLAMTALDVILEENMIENAYKMGEIFRSELRSRLSPDIVPV-VRGKGLLNAIVLDKSIL 186
+++ ++ +++N ++ L + + I ++ +
Sbjct: 336 TLVSLLSMGSKNYLELVKNQKNSKKLLDELLNDLSKKTGGKFLDVESPIASCISVNSDPV 395
Query: 187 EVYD 190
E+
Sbjct: 396 EIAA 399
>3zrp_A Serine-pyruvate aminotransferase (AGXT); HET: PLP; 1.75A
{Sulfolobus solfataricus} PDB: 3zrq_A* 3zrr_A*
Length = 384
Score = 29.1 bits (66), Expect = 1.4
Identities = 21/107 (19%), Positives = 36/107 (33%), Gaps = 28/107 (26%)
Query: 6 PVKSKQVPAKLKSNPNICAFMVEPIQGE--AGAVVPDDGYLKKVRALCSQYNVLFIADEV 63
VK +V +++ + E G P +K V +Y L + D V
Sbjct: 113 YVKPGEVEEEVR-KSEYKLVAL--THVETSTGVREP----VKDVINKIRKYVELIVVDGV 165
Query: 64 QTGLGRTGKLLAIHYEDVRP-----DIVILG--KALSG--GLYPISA 101
+ +G E+V+ D+ + KAL GL +
Sbjct: 166 -SSVGA---------EEVKAEEWNVDVYLTASQKALGSAAGLGLLLL 202
>1uc2_A PH1602, hypothetical protein PH1602; structural genomics, unknown
function; HET: SUC; 2.15A {Pyrococcus horikoshii} SCOP:
d.261.1.1
Length = 481
Score = 28.9 bits (64), Expect = 1.6
Identities = 19/90 (21%), Positives = 33/90 (36%), Gaps = 6/90 (6%)
Query: 94 GGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDV--ILEE--NMIENAYK 149
G +PI V A D G + PG G + +T +V +++ + +
Sbjct: 69 GYGFPIGGVAAFDVKEGVISPGGIGYDINCGVRLIRTNLTEKEVRPRIKQLVDTLFKNVP 128
Query: 150 MGEIFRSELRSRLSPDIVPVVRGKGLLNAI 179
G S+ R +L + V G A+
Sbjct: 129 SG--VGSQGRIKLHWTQIDDVLVDGAKWAV 156
>3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint CE
structural genomics, JCSG, protein structure initiative;
HET: LLP MES; 1.91A {Neisseria meningitidis Z2491}
Length = 396
Score = 28.7 bits (65), Expect = 1.8
Identities = 9/28 (32%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Query: 35 GAVVPDDGYLKKVRALCSQYNVLFIADE 62
G+V+ D K+V L +Y + +DE
Sbjct: 182 GSVLDLD-GWKEVFDLQDKYGFIIASDE 208
>2oqx_A Tryptophanase; lyase, pyridoxal phosphate, tryptophan catabolism;
HET: CME EPE; 1.90A {Escherichia coli} SCOP: c.67.1.2
PDB: 2c44_A 2v1p_A* 2v0y_A*
Length = 467
Score = 28.8 bits (64), Expect = 1.8
Identities = 6/27 (22%), Positives = 13/27 (48%), Gaps = 1/27 (3%)
Query: 35 GAVVPDDGYLKKVRALCSQYNVLFIAD 61
G V LK + ++ +Y++ + D
Sbjct: 198 GQPVSLA-NLKAMYSIAKKYDIPVVMD 223
>3ezs_A Aminotransferase ASPB; NP_207418.1, structural genomics, JOI for
structural genomics, JCSG; HET: MSE; 2.19A {Helicobacter
pylori 26695}
Length = 376
Score = 27.9 bits (63), Expect = 2.7
Identities = 6/28 (21%), Positives = 12/28 (42%), Gaps = 1/28 (3%)
Query: 35 GAVVPDDGYLKKVRALCSQYNVLFIADE 62
G + + L L +++ + I DE
Sbjct: 168 GRTLSLE-ELISWVKLALKHDFILINDE 194
>3if2_A Aminotransferase; YP_265399.1, structura genomics, joint center for
structural genomics, JCSG, prote structure initiative,
PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4}
Length = 444
Score = 27.8 bits (62), Expect = 3.2
Identities = 10/62 (16%), Positives = 21/62 (33%), Gaps = 15/62 (24%)
Query: 34 AGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALS 93
G V+ D+ + + + +Y++ I D Y P+I+ L+
Sbjct: 219 TGNVLTDEE-MAHLAEIAKRYDIPLIIDNA--------------YGMPFPNIIYSDAHLN 263
Query: 94 GG 95
Sbjct: 264 WD 265
>3e9k_A Kynureninase; kynurenine-L-hydrolase, kynurenine hydrolase,
pyridoxal-5'-phosphate, inhibitor complex, 3-hydroxy
hippur hydroxyhippuric acid, PLP; HET: PLP 3XH; 1.70A
{Homo sapiens} PDB: 2hzp_A*
Length = 465
Score = 28.0 bits (62), Expect = 3.3
Identities = 9/49 (18%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 189 YDVCIKMKDAGLVTKPISNNIIRLSPA-LNITEQELREGLDIIINTINT 236
DV +++ G+V + N IR++P L + ++ + +++ + +++
Sbjct: 412 KDVFQELEKRGVVCDKRNPNGIRVAPVPLYNSFHDVYKFTNLLTSILDS 460
>1epu_A S-SEC1; parallel beta-sheets, LEFT-hand turn connection, helical
BUN endocytosis-exocytosis complex; 2.40A {Loligo
pealei} SCOP: e.25.1.1 PDB: 1fvf_A 1fvh_A
Length = 591
Score = 27.6 bits (60), Expect = 5.0
Identities = 7/44 (15%), Positives = 21/44 (47%)
Query: 154 FRSELRSRLSPDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKD 197
++ + ++ D+V V+ +++D+ + + C KM +
Sbjct: 3 LKTAVHEKIMNDVVLAVKKNAEWKVLIVDQLSMRMVSACCKMHE 46
>3b46_A Aminotransferase BNA3; kynurenine aminotransferase, LLP, PLP,
cytoplasm, mitochondrion, pyridoxal phosphate; HET: LLP;
2.00A {Saccharomyces cerevisiae}
Length = 447
Score = 27.3 bits (61), Expect = 5.4
Identities = 8/20 (40%), Positives = 14/20 (70%)
Query: 44 LKKVRALCSQYNVLFIADEV 63
L + +C ++NV+ I+DEV
Sbjct: 223 LTTLGNICVKHNVVIISDEV 242
>1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic
acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP;
HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB:
1yiy_A* 2r5c_A* 2r5e_A*
Length = 429
Score = 27.3 bits (61), Expect = 5.6
Identities = 10/20 (50%), Positives = 15/20 (75%)
Query: 44 LKKVRALCSQYNVLFIADEV 63
L+ V LC ++NVL ++DEV
Sbjct: 204 LEVVANLCKKWNVLCVSDEV 223
>3e2y_A Kynurenine-oxoglutarate transaminase 3; alpha beta protein, PLP
dependent protein, aminotransferase, pyridoxal
phosphate, transferase; HET: GLN PMP; 2.26A {Mus
musculus} PDB: 2zjg_A* 3e2f_A* 3e2z_A*
Length = 410
Score = 26.9 bits (60), Expect = 6.1
Identities = 8/20 (40%), Positives = 14/20 (70%)
Query: 44 LKKVRALCSQYNVLFIADEV 63
L+ + LC +++ L I+DEV
Sbjct: 189 LQVIADLCVKHDTLCISDEV 208
>1xi3_A Thiamine phosphate pyrophosphorylase; structural genomics,
southeast collaboratory for structural genomics,
hyperthermophIle; 1.70A {Pyrococcus furiosus} SCOP:
c.1.3.1
Length = 215
Score = 26.8 bits (60), Expect = 6.5
Identities = 6/15 (40%), Positives = 9/15 (60%)
Query: 45 KKVRALCSQYNVLFI 59
K +R L +Y+ LF
Sbjct: 60 KTLRQLTREYDALFF 74
>3fvs_A Kynurenine--oxoglutarate transaminase 1; alpha beta protein, PLP
dependent protein, aminotransferase, pyridoxal
phosphate, transferase; HET: LLP; 1.50A {Homo sapiens}
PDB: 3fvu_A* 3fvx_A* 1w7l_A* 1w7m_A* 1w7n_A*
Length = 422
Score = 26.9 bits (60), Expect = 6.8
Identities = 10/20 (50%), Positives = 15/20 (75%)
Query: 44 LKKVRALCSQYNVLFIADEV 63
L+ V +LC Q++V+ I DEV
Sbjct: 196 LELVASLCQQHDVVCITDEV 215
>1v2d_A Glutamine aminotransferase; PLP, riken structural
genomics/proteomics initi RSGI, structural genomics;
HET: PLP; 1.90A {Thermus thermophilus} SCOP: c.67.1.1
PDB: 1v2e_A* 1v2f_A*
Length = 381
Score = 26.8 bits (60), Expect = 7.4
Identities = 6/20 (30%), Positives = 12/20 (60%)
Query: 44 LKKVRALCSQYNVLFIADEV 63
L+ + L +++ I+DEV
Sbjct: 174 LEAIARLARAHDLFLISDEV 193
>3g7q_A Valine-pyruvate aminotransferase; NP_462565.1, structur genomics,
joint center for structural genomics, JCSG, prote
structure initiative; HET: MSE; 1.80A {Salmonella
typhimurium}
Length = 417
Score = 26.8 bits (60), Expect = 7.8
Identities = 9/29 (31%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Query: 34 AGAVVPDDGYLKKVRALCSQYNVLFIADE 62
G V+ D+ L K+ L +Q+N+ + D
Sbjct: 193 TGNVITDEE-LMKLDRLANQHNIPLVIDN 220
>3lws_A Aromatic amino acid beta-eliminating lyase/threonine aldolase;
structural genomics, joint center for structural
genomics, JCSG; HET: LLP MSE; 2.00A {Exiguobacterium
sibiricum}
Length = 357
Score = 26.5 bits (59), Expect = 9.9
Identities = 11/44 (25%), Positives = 21/44 (47%)
Query: 13 PAKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNV 56
++K+ P+I ++E Q E G V P L+ + C + +
Sbjct: 127 LDEIKALPDIACLLLELPQREIGGVAPAFSELETISRYCRERGI 170
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.138 0.388
Gapped
Lambda K H
0.267 0.0782 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,746,124
Number of extensions: 239403
Number of successful extensions: 744
Number of sequences better than 10.0: 1
Number of HSP's gapped: 640
Number of HSP's successfully gapped: 102
Length of query: 242
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 151
Effective length of database: 4,160,982
Effective search space: 628308282
Effective search space used: 628308282
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (25.2 bits)