RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy6548
(242 letters)
>d1z7da1 c.67.1.4 (A:7-410) Ornithine aminotransferase {Plasmodium
yoelii yoelii [TaxId: 73239]}
Length = 404
Score = 230 bits (586), Expect = 1e-74
Identities = 119/218 (54%), Positives = 163/218 (74%), Gaps = 1/218 (0%)
Query: 18 SNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIH 77
+PN+CAF+VEPIQGEAG +VP D YL+ V +C +YNVLF+ADEVQTGLGRTGKLL +H
Sbjct: 183 KDPNVCAFIVEPIQGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQTGLGRTGKLLCVH 242
Query: 78 YEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDV 137
+ +V+PD+++LGKALSGG YPISAVLA+D++M + PG HGSTYGGNPLA + + AL+V
Sbjct: 243 HYNVKPDVILLGKALSGGHYPISAVLANDDIMLVIKPGEHGSTYGGNPLAASICVEALNV 302
Query: 138 ILEENMIENAYKMGEIFRSELRSRLS-PDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMK 196
++ E + ENA K+G F L+ L IV VRGKGLL AI ++ V D+C+K+K
Sbjct: 303 LINEKLCENAEKLGGPFLENLKRELKDSKIVRDVRGKGLLCAIEFKNELVNVLDICLKLK 362
Query: 197 DAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTI 234
+ GL+T+ + + IRL+P L IT+++L E +II+ T+
Sbjct: 363 ENGLITRDVHDKTIRLTPPLCITKEQLDECTEIIVKTV 400
>d2byla1 c.67.1.4 (A:36-439) Ornithine aminotransferase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 404
Score = 223 bits (568), Expect = 5e-72
Identities = 132/221 (59%), Positives = 170/221 (76%), Gaps = 2/221 (0%)
Query: 15 KLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLL 74
+ +PN+ AFMVEPIQGEAG VVPD GYL VR LC+++ VLFIADE+QTGL RTG+ L
Sbjct: 182 RALQDPNVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTGRWL 241
Query: 75 AIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTA 134
A+ YE+VRPDIV+LGKALSGGLYP+SAVL DD++M T+ PG H STYGGNPL C++A+ A
Sbjct: 242 AVDYENVRPDIVLLGKALSGGLYPVSAVLCDDDIMLTIKPGEHFSTYGGNPLGCRVAIAA 301
Query: 135 LDVILEENMIENAYKMGEIFRSELRSRLSPDIVPVVRGKGLLNAIVL-DKSILEVYDVCI 193
L+V+ EEN+ ENA K+G I R+EL +L D+V VRGKGLLNAIV+ + + + VC+
Sbjct: 302 LEVLEEENLAENADKLGIILRNELM-KLPSDVVTAVRGKGLLNAIVIKETKDWDAWKVCL 360
Query: 194 KMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTI 234
+++D GL+ KP +IIR +P L I E ELRE ++II TI
Sbjct: 361 RLRDNGLLAKPTHGDIIRFAPPLVIKEDELRESIEIINKTI 401
>d1vefa1 c.67.1.4 (A:9-395) Acetylornithine/acetyl-lysine
aminotransferase ArgD {Thermus thermophilus [TaxId:
274]}
Length = 387
Score = 186 bits (472), Expect = 9e-58
Identities = 67/212 (31%), Positives = 109/212 (51%), Gaps = 4/212 (1%)
Query: 19 NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHY 78
+ A ++EP+QGE G +L+ R + + L I DE+QTG+GRTGK A +
Sbjct: 175 DEETAAVILEPVQGEGGVRPATPEFLRAAREITQEKGALLILDEIQTGMGRTGKRFAFEH 234
Query: 79 EDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVI 138
+ PDI+ L KAL GG P+ + +EV ++ G HG+T+GGNPLA + A+ +
Sbjct: 235 FGIVPDILTLAKALGGG-VPLGVAVMREEVARSMPKGGHGTTFGGNPLAMAAGVAAIRYL 293
Query: 139 LEENMIENAYKMGEIFRSELRSRLSPDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDA 198
+ E A ++G F +LR+ SP I VRG GL+ + L + + K+
Sbjct: 294 ERTRLWERAAELGPWFMEKLRAIPSPKIRE-VRGMGLMVGLELKEKAAP--YIARLEKEH 350
Query: 199 GLVTKPISNNIIRLSPALNITEQELREGLDII 230
++ +IR P L I +++L ++ +
Sbjct: 351 RVLALQAGPTVIRFLPPLVIEKEDLERVVEAV 382
>d1sffa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase,
GABA-aminotransferase {Escherichia coli [TaxId: 562]}
Length = 425
Score = 181 bits (461), Expect = 8e-56
Identities = 75/233 (32%), Positives = 126/233 (54%), Gaps = 13/233 (5%)
Query: 19 NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHY 78
+I A ++EP+QGE G +++++RALC ++ ++ IADEVQ+G GRTG L A+
Sbjct: 196 PEDIAAIVIEPVQGEGGFYASSPAFMQRLRALCDEHGIMLIADEVQSGAGRTGTLFAMEQ 255
Query: 79 EDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVI 138
V PD+ K+++GG +P++ V EVM + PG G TY GNP+AC A+ L V
Sbjct: 256 MGVAPDLTTFAKSIAGG-FPLAGVTGRAEVMDAVAPGGLGGTYAGNPIACVAALEVLKVF 314
Query: 139 LEENMIENAYKMGEIFRSELRSRLS-PDIVPVVRGKGLLNAIVLDKSILEVY-------D 190
+EN+++ A +G+ + L + + VRG G + AI L + +
Sbjct: 315 EQENLLQKANDLGQKLKDGLLAIAEKHPEIGDVRGLGAMIAIELFEDGDHNKPDAKLTAE 374
Query: 191 VCIKMKDAGLVTKPI--SNNIIRLSPALNITEQELREGLDIIINTINTMAAKK 241
+ + +D GL+ N++R+ L I + ++R+GL+II + AK+
Sbjct: 375 IVARARDKGLILLSCGPYYNVLRILVPLTIEDAQIRQGLEIISQCFD--EAKQ 425
>d1s0aa_ c.67.1.4 (A:) Adenosylmethionine-8-amino-7-oxononanoate
aminotransferase, BioA {Escherichia coli [TaxId: 562]}
Length = 429
Score = 150 bits (378), Expect = 2e-43
Identities = 67/224 (29%), Positives = 107/224 (47%), Gaps = 8/224 (3%)
Query: 17 KSNPNICAFMVEPIQGEAGA-VVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLA 75
I A ++EPI AG + +LK++R +C + +L IADE+ TG GRTGKL A
Sbjct: 200 AHRHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTGKLFA 259
Query: 76 IHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPG-----THGSTYGGNPLACKL 130
+ ++ PDI+ LGKAL+GG +SA L EV T+ G HG T+ GNPLAC
Sbjct: 260 CEHAEIAPDILCLGKALTGGTMTLSATLTTREVAETISNGEAGCFMHGPTFMGNPLACAA 319
Query: 131 AMTALDVILEENMIENAYKMGEIFRSELRSRLSPDIVPVVRGKGLLNAIVLDKSILEVYD 190
A +L ++ + + + R +L ++V VR G + + + +
Sbjct: 320 ANASLAILESGDWQQQVADIEVQLREQLAPARDAEMVADVRVLGAIGVVETTHPV-NMAA 378
Query: 191 VCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTI 234
+ + G+ +P +I L P I Q+L+ + +
Sbjct: 379 LQKFFVEQGVWIRP-FGKLIYLMPPYIILPQQLQRLTAAVNRAV 421
>d2gsaa_ c.67.1.4 (A:) Glutamate-1-semialdehyde aminomutase
(aminotransferase) {Synechococcus sp., strain GR6
[TaxId: 1131]}
Length = 427
Score = 127 bits (320), Expect = 4e-35
Identities = 52/241 (21%), Positives = 92/241 (38%), Gaps = 21/241 (8%)
Query: 14 AKLKSNPN-ICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGK 72
A NP I ++EPI G +G +VPD G+L+ +R + +++ L + DEV TG R
Sbjct: 191 ALFAENPGEIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVFDEVMTG-FRIAY 249
Query: 73 LLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPG---THGSTYGGNPLACK 129
V PD+ LGK + GG P+ A E+M + P T GNPLA
Sbjct: 250 GGVQEKFGVTPDLTTLGKIIGGG-LPVGAYGGKREIMQLVAPAGPMYQAGTLSGNPLAMT 308
Query: 130 LAMTALDVILEENMIENAYKMGEIFRSELRSRLS-PDIVPVVRGKGLLNAIVLDKSILEV 188
+ L+++ + E ++ + L + + + +
Sbjct: 309 AGIKTLELLRQPGTYEYLDQITKRLSDGLLAIAQETGHAACGGQVSGMFGFFFTEGPVHN 368
Query: 189 YD------------VCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTINT 236
Y+ M + G+ P + +L TE+++ L ++
Sbjct: 369 YEDAKKSDLQKFSRFHRGMLEQGIYLAP--SQFEAGFTSLAHTEEDIDATLAAARTVMSA 426
Query: 237 M 237
+
Sbjct: 427 L 427
>d1zoda1 c.67.1.4 (A:3-433) Dialkylglycine decarboxylase
{Pseudomonas cepacia [TaxId: 292]}
Length = 431
Score = 120 bits (301), Expect = 2e-32
Identities = 68/231 (29%), Positives = 110/231 (47%), Gaps = 13/231 (5%)
Query: 17 KSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAI 76
+S+ N+ AF+ EPI G + DGY+ ++ C +L I DE QTG+GRTG + A
Sbjct: 197 QSSGNLAAFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRTGTMFAC 256
Query: 77 HYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGT-HGSTYGGNPLACKLAMTAL 135
+ V PDI+ L K L GL + V + G +T+ +PL + + L
Sbjct: 257 QRDGVTPDILTLSKTLGAGLPLAAIVTSAAIEERAHELGYLFYTTHVSDPLPAAVGLRVL 316
Query: 136 DVILEENMIENAYKMGEIFRSELRSRLS-PDIVPVVRGKGLLNAIVL--DKSILEVYD-- 190
DV+ + ++ A MG+ R L + D + VRG+GLL + + D+ E D
Sbjct: 317 DVVQRDGLVARANVMGDRLRRGLLDLMERFDCIGDVRGRGLLLGVEIVKDRRTKEPADGL 376
Query: 191 ---VCIKMKDAGL----VTKPISNNIIRLSPALNITEQELREGLDIIINTI 234
+ + + GL V P + R++P L ++E E+ GL ++ I
Sbjct: 377 GAKITRECMNLGLSMNIVQLPGMGGVFRIAPPLTVSEDEIDLGLSLLGQAI 427
>d1ohwa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase,
GABA-aminotransferase {Pig (Sus scrofa) [TaxId: 9823]}
Length = 461
Score = 94.3 bits (233), Expect = 7e-23
Identities = 42/228 (18%), Positives = 88/228 (38%), Gaps = 8/228 (3%)
Query: 10 KQVPAKLKSNPNICAFMVEPIQGEAGAVV-PDDGYLKKVRALCSQYNVLFIADEVQTGLG 68
+ + K + A ++ G D + +K+R + ++ F+ DEVQTG G
Sbjct: 236 EDLIVKYRKKKKTVAGIIVEPIQSEGGDNHASDDFFRKLRDISRKHGCAFLVDEVQTGGG 295
Query: 69 RTGKLLAIHYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLAC 128
TGK A + + ++ + ++ E P +T+ G+P
Sbjct: 296 STGKFWAHEHWGLDDPADVMTFSK----KMMTGGFFHKEEFRPNAPYRIFNTWLGDPSKN 351
Query: 129 KLAMTALDVILEENMIENAYKMGEIFRSELRSRLS--PDIVPVVRGKGLLNAIVLDKSIL 186
L +++I E+++ NA G++ + L + P + VRG+G + +
Sbjct: 352 LLLAEVINIIKREDLLSNAAHAGKVLLTGLLDLQARYPQFISRVRGRGTFCSFDTPDESI 411
Query: 187 EVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTI 234
+ ++ G++ + IR P L + L+I + +
Sbjct: 412 -RNKLISIARNKGVMLGGCGDKSIRFRPTLVFRDHHAHLFLNIFSDIL 458
>d2v1pa1 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptophanase)
{Escherichia coli [TaxId: 562]}
Length = 467
Score = 63.8 bits (154), Expect = 2e-12
Identities = 29/264 (10%), Positives = 64/264 (24%), Gaps = 43/264 (16%)
Query: 14 AKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQT-GLGRTGK 72
+ N+ + AG LK + ++ +Y++ + D + K
Sbjct: 176 IEEVGPNNVPYIVATITSNSAGGQPVSLANLKAMYSIAKKYDIPVVMDSARFAENAYFIK 235
Query: 73 LLAIHYEDVRPDIVI-------------LGKALSGGLYPISAVLADDEVMGTLVPGTHGS 119
Y+D + + K + + + D T
Sbjct: 236 QREAEYKDWTIEQITRETYKYADMLAMSAKKDAMVPMGGLLCMKDDSFFDVYTECRTLCV 295
Query: 120 TYGGNPLACKLAMTA-------LDVILEENMIENAYKMGEIFRSELRSR----------- 161
G P L A L + + + + L
Sbjct: 296 VQEGFPTYGGLEGGAMERLAVGLYDGMNLDWLAYRIAQVQYLVDGLEEIGVVCQQAGGHA 355
Query: 162 -------LSPDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVT---KPISNNIIR 211
L P I L + + + ++ + T P ++R
Sbjct: 356 AFVDAGKLLPHIPADQFPAQALACELYKVAGIRAVEIGSFLLGRDPKTGKQLPCPAELLR 415
Query: 212 LS-PALNITEQELREGLDIIINTI 234
L+ P T+ + ++ +
Sbjct: 416 LTIPRATYTQTHMDFIIEAFKHVK 439
>d1m6sa_ c.67.1.1 (A:) Low-specificity threonine aldolase
{Thermotoga maritima [TaxId: 2336]}
Length = 343
Score = 61.7 bits (148), Expect = 9e-12
Identities = 24/212 (11%), Positives = 70/212 (33%), Gaps = 2/212 (0%)
Query: 19 NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHY 78
P +E +G V +K++ + ++ + D + + +
Sbjct: 126 FPRTSLIAIENTHNRSGGRVVPLENIKEICTIAKEHGINVHIDGARIFNASIASGVPVKE 185
Query: 79 EDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVI 138
D V+ + S V+ D + + G A + +
Sbjct: 186 YAGYADSVMFCLSKGLCAPVGSVVVGDRDFIERARKARKMLGGGMRQAGVLAAAGIIALT 245
Query: 139 LEENMIENAYKMGEIFRSELRSRLSPDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDA 198
+ ++ ++ +L+ V+ ++ + D + + ++++
Sbjct: 246 KMVDRLKEDHENARFLALKLKEIGYSVNPEDVKTNMVI--LRTDNLKVNAHGFIEALRNS 303
Query: 199 GLVTKPISNNIIRLSPALNITEQELREGLDII 230
G++ +S+ IRL +++ ++ E L+I
Sbjct: 304 GVLANAVSDTEIRLVTHKDVSRNDIEEALNIF 335
>d1ax4a_ c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanase)
{Proteus vulgaris [TaxId: 585]}
Length = 465
Score = 57.3 bits (137), Expect = 3e-10
Identities = 43/265 (16%), Positives = 69/265 (26%), Gaps = 42/265 (15%)
Query: 19 NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQT------GLGRTGK 72
NI A + AG LK+V + Q+ + + D + R K
Sbjct: 180 ADNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHGIFVVMDSARFCENAYFIKARDPK 239
Query: 73 LLAIHYEDVRPDIVILGKALS-----GGLYPISAVLAD-------DEVMGTLVPGTHGST 120
++V D+ AL+ L I ++A VP T
Sbjct: 240 YKNATIKEVIFDMYKYADALTMSAKKDPLLNIGGLVAIRDNEEIFTLARQRCVPMEGFVT 299
Query: 121 YGGNPLACKLAMTALD-VILEENMIENAYKMGEIFRSELRSRLS---------------- 163
YGG AM EE + + LR
Sbjct: 300 YGGLAGRDMAAMVQGLEEGTEEEYLHYRIGQVKYLGDRLREAGIPIQYPTGGHAVFVDCK 359
Query: 164 ---PDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKDAGLVT---KPISNNIIRLS-PAL 216
P I + + +S + ++ + T K +RL+
Sbjct: 360 KLVPQIPGDQFPAQAVINALYLESGVRAVEIGSFLLGRDPATGEQKHADMEFMRLTIARR 419
Query: 217 NITEQELREGLDIIINTINTMAAKK 241
T + D +I A K
Sbjct: 420 VYTNDHMDYIADALIGLKEKFATLK 444
>d1v72a1 c.67.1.1 (A:6-350) Phenylserine aldolase PSALD {Pseudomonas
putida [TaxId: 303]}
Length = 345
Score = 51.0 bits (120), Expect = 3e-08
Identities = 24/216 (11%), Positives = 64/216 (29%), Gaps = 10/216 (4%)
Query: 19 NPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTG--LGRTGKLLAI 76
V Q + ++ + +C ++ D + L G A
Sbjct: 132 VHTTQPACVSITQATEVGSIYTLDEIEAIGDVCKSSSLGLHMDGSRFANALVSLGCSPAE 191
Query: 77 HYEDVRPDIVILGKALSGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALD 136
D + G +G L + VL + + + + + + + +D
Sbjct: 192 MTWKAGVDALSFGATKNGVLAAEAIVLFNTSLATEMSYRRKRAGHLSSKMRF--LSAQID 249
Query: 137 VILEENMIENAYKMGEIFRSELRSRLS--PDIVPVVRGKGLLNAIVLDKSILEVYDVCIK 194
L +++ + L L + + + + LD ++++ +
Sbjct: 250 AYLTDDLWLRNARKANAAAQRLAQGLEGLGGVEVLGGTEANILFCRLDSAMIDA----LL 305
Query: 195 MKDAGLVTKPISNNIIRLSPALNITEQELREGLDII 230
G N++R + T +++ L+ +
Sbjct: 306 KAGFGFYHDRWGPNVVRFVTSFATTAEDVDHLLNQV 341
>d1b5pa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermus
thermophilus [TaxId: 274]}
Length = 382
Score = 36.7 bits (84), Expect = 0.002
Identities = 38/225 (16%), Positives = 76/225 (33%), Gaps = 11/225 (4%)
Query: 14 AKLKSNPNICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKL 73
+ P A +V GAV P + L+ + L +++ ++DE+ L G+
Sbjct: 157 VRRAITPRTKALVVNSPNNPTGAVYPKE-VLEALARLAVEHDFYLVSDEIYEHLLYEGEH 215
Query: 74 LAIHYEDVRPDIVI--LGKALSGGLYPISAVLADDEVMGTLVP-GTHGSTYGGNPLACKL 130
+ + + KA + + I EV+ + +T
Sbjct: 216 FSPGRVAPEHTLTVNGAAKAFAMTGWRIGYACGPKEVIKAMASVSRQSTTSPDTIAQWAT 275
Query: 131 AMTALDVILEENMIENAYKMGEIFRSELRSRLSPDIVPVVRGKGLLNAIV-LDKSILEVY 189
+ +E A + R L L+ + VR G ++ +
Sbjct: 276 LEALTNQEASRAFVEMAREAYRRRRDLLLEGLTALGLKAVRPSGAFYVLMDTSPIAPDEV 335
Query: 190 DVCIKMKDAGLVTKPIS----NNIIRLSPALNITEQELREGLDII 230
++ +AG+ P + +RLS A + E+ LR+ L+
Sbjct: 336 RAAERLLEAGVAVVPGTDFAAFGHVRLSYATS--EENLRKALERF 378
>d1svva_ c.67.1.1 (A:) Low-specificity threonine aldolase
{Leishmania major [TaxId: 5664]}
Length = 340
Score = 33.4 bits (74), Expect = 0.018
Identities = 14/114 (12%), Positives = 37/114 (32%), Gaps = 5/114 (4%)
Query: 117 HGSTYGGNPLACKLAMTALDVILEENMIENAYKMGEIFRSELRSRLSPDIVPVVRGKGLL 176
G+ L + L + ++ KM I ++ L + I
Sbjct: 229 RGALMAKGWLLGIQFEVLMKDNLFFELGAHSNKMAAILKAGLEA---CGIRLAWPSASNQ 285
Query: 177 NAIVLDKSILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDII 230
+L+ +++ ++ + I+RL + E+E ++++
Sbjct: 286 LFPILENTMIA--ELNNDFDMYTVEPLKDGTCIMRLCTSWATEEKECHRFVEVL 337
>d2hgca1 a.4.5.77 (A:5-82) Uncharacterized protein YjcQ {Bacillus
subtilis [TaxId: 1423]}
Length = 78
Score = 28.1 bits (62), Expect = 0.23
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 61 DEVQTGLGRTGKLLAIHYEDVRPDIVILGKALS 93
D+ L R G ++ +HY D RP + LG L+
Sbjct: 30 DDAVNFLKREGYIIGVHYSDDRPHLYKLGPELT 62
>d1epua_ e.25.1.1 (A:) Neuronal Sec1, NSec1 {Longfin inshore squid
(Loligo pealei) [TaxId: 6621]}
Length = 590
Score = 29.7 bits (66), Expect = 0.39
Identities = 7/44 (15%), Positives = 21/44 (47%)
Query: 154 FRSELRSRLSPDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKD 197
++ + ++ D+V V+ +++D+ + + C KM +
Sbjct: 2 LKTAVHEKIMNDVVLAVKKNAEWKVLIVDQLSMRMVSACCKMHE 45
>d1dqna_ c.61.1.1 (A:) Guanine PRTase {Giardia lamblia [TaxId:
5741]}
Length = 230
Score = 29.1 bits (65), Expect = 0.42
Identities = 13/79 (16%), Positives = 34/79 (43%), Gaps = 3/79 (3%)
Query: 22 ICAFMVEPIQGEAGAVVPDDGYLKKVRALCSQYNVLFIADEVQTGLGRTGKLLAIHYEDV 81
IC+ +P++ D + + + ++++L +E + T + + +Y+DV
Sbjct: 2 ICSVTGKPVKDVLSTFFKDRNDV--LESEVKKFHLLATFEECKALAADTARRMNEYYKDV 59
Query: 82 RPDIVILGKALSGGLYPIS 100
+ ++ L+G S
Sbjct: 60 AEPVTLVA-LLTGAYLYAS 77
>d1dn1a_ e.25.1.1 (A:) Neuronal Sec1, NSec1 {Rat (Rattus norvegicus)
[TaxId: 10116]}
Length = 589
Score = 29.3 bits (65), Expect = 0.45
Identities = 11/48 (22%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Query: 150 MGEIFRSELRSRLSPDIVPVVRGKGLLNAIVLDKSILEVYDVCIKMKD 197
+G ++ + ++ D++ V+ KG +V+D+ + + C KM D
Sbjct: 1 IG--LKAVVGEKIMHDVIKKVKKKGEWKVLVVDQLSMRMLSSCCKMTD 46
>d1j7ja_ c.61.1.1 (A:) Hypoxanthine PRTase {Salmonella typhimurium
[TaxId: 90371]}
Length = 172
Score = 26.8 bits (59), Expect = 1.9
Identities = 9/45 (20%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Query: 56 VLFIADEVQTGLGRTGKLLAIHYEDVRPDIVILGKALSGGLYPIS 100
V+ E++ + G+ + Y+D ++V++G L G ++
Sbjct: 5 VMIPEAEIKARIAELGRQITERYKDSGSEMVLVGL-LRGSFMFMA 48
>d1qz9a_ c.67.1.3 (A:) Kynureninase {Pseudomonas fluorescens [TaxId:
294]}
Length = 404
Score = 27.4 bits (59), Expect = 2.0
Identities = 10/49 (20%), Positives = 20/49 (40%), Gaps = 1/49 (2%)
Query: 189 YDVCIKMKDAGLVTKPISNNIIRLSPA-LNITEQELREGLDIIINTINT 236
Y V + D G++ I+R L T E+ + + I+ ++
Sbjct: 352 YAVIQALIDRGVIGDYREPRIMRFGFTPLYTTFTEVWDAVQILGEILDR 400
>d1khba2 c.109.1.1 (A:10-259) Cytosolic phosphoenolpyruvate
carboxykinase (GTP-hydrolyzing) {Human (Homo sapiens)
[TaxId: 9606]}
Length = 250
Score = 27.1 bits (60), Expect = 2.1
Identities = 8/14 (57%), Positives = 9/14 (64%)
Query: 116 THGSTYGGNPLACK 129
+ GS YGGN L K
Sbjct: 221 SFGSGYGGNSLLGK 234
>d1vpta_ c.66.1.25 (A:) Polymerase regulatory subunit VP39 {Vaccinia
virus [TaxId: 10245]}
Length = 297
Score = 26.3 bits (58), Expect = 3.1
Identities = 5/22 (22%), Positives = 12/22 (54%)
Query: 40 DDGYLKKVRALCSQYNVLFIAD 61
D+ YL+ ++ ++ I+D
Sbjct: 117 DEEYLRSIKKQLHPSKIILISD 138
>d1c1ka_ a.120.1.1 (A:) gene 59 helicase assembly protein
{Bacteriophage T4 [TaxId: 10665]}
Length = 217
Score = 25.6 bits (56), Expect = 5.9
Identities = 14/62 (22%), Positives = 27/62 (43%), Gaps = 9/62 (14%)
Query: 177 NAIVLDK--SILEVYDVCIKMKDAGLVTKPISNNIIRLSPALNITEQELREGLDIIINTI 234
I+LD +I++ +D + + LV S + LNI Q+ + + I T+
Sbjct: 160 TFILLDSFLNIIDKHDE--QTDN--LVWNNYSIKLKAYRKILNIDSQKAKN---VFIETV 212
Query: 235 NT 236
+
Sbjct: 213 KS 214
>d1tuaa2 d.51.1.1 (A:85-188) Hypothetical protein APE0754 {Aeropyrum
pernix [TaxId: 56636]}
Length = 104
Score = 24.3 bits (53), Expect = 9.0
Identities = 9/39 (23%), Positives = 17/39 (43%)
Query: 123 GNPLACKLAMTALDVILEENMIENAYKMGEIFRSELRSR 161
G+ A A++++ E M Y+ E E++ R
Sbjct: 57 GDYERAMAAKQAIEMLAEGRMHSTVYRHLERIMREIKRR 95
>d1uc2a_ d.261.1.1 (A:) Hypothetical protein PH1602 {Archaeon
Pyrococcus horikoshii [TaxId: 53953]}
Length = 480
Score = 25.0 bits (54), Expect = 9.7
Identities = 13/63 (20%), Positives = 23/63 (36%), Gaps = 5/63 (7%)
Query: 93 SGGLYPISAVLADDEVMGTLVPGTHGSTYGGNPLACKLAMTALDVILEENMIENAYKMGE 152
G +PI V A D G + PG G C + + ++ +E +
Sbjct: 67 QGYGFPIGGVAAFDVKEGVISPGGIGYDIN-----CGVRLIRTNLTEKEVRPRIKQLVDT 121
Query: 153 IFR 155
+F+
Sbjct: 122 LFK 124
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.138 0.388
Gapped
Lambda K H
0.267 0.0499 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 877,011
Number of extensions: 41304
Number of successful extensions: 136
Number of sequences better than 10.0: 1
Number of HSP's gapped: 120
Number of HSP's successfully gapped: 27
Length of query: 242
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 159
Effective length of database: 1,268,006
Effective search space: 201612954
Effective search space used: 201612954
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.4 bits)