BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6549
(109 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O88384|VTI1B_MOUSE Vesicle transport through interaction with t-SNAREs homolog 1B
OS=Mus musculus GN=Vti1b PE=1 SV=1
Length = 232
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 41/102 (40%), Positives = 68/102 (66%)
Query: 6 RETLRETNQALVRTGESIVRSEQAALEAEAIGTGVISELGVQREALVRARDRLVDTDLHV 65
R L + ++L R +SI RS + A E + IGT +I ELG QR+ L R + RLV+T+ ++
Sbjct: 129 RALLLQGTESLNRATQSIERSHRIATETDQIGTEIIEELGEQRDQLERTKSRLVNTNENL 188
Query: 66 SRSRRMIQAIRRRVFYNKLFLIMIIVIESMTLSVMLYLKIFK 107
S+SR++++++ R+V NKL L +II++E L ++Y K F+
Sbjct: 189 SKSRKILRSMSRKVITNKLLLSVIILLELAILVGLVYYKFFR 230
>sp|P58200|VTI1B_RAT Vesicle transport through interaction with t-SNAREs homolog 1B
OS=Rattus norvegicus GN=Vti1b PE=1 SV=2
Length = 232
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 41/102 (40%), Positives = 68/102 (66%)
Query: 6 RETLRETNQALVRTGESIVRSEQAALEAEAIGTGVISELGVQREALVRARDRLVDTDLHV 65
R L + ++L R +SI RS + A E + IG+ +I ELG QR+ L R + RLV+T+ ++
Sbjct: 129 RALLLQGTESLNRATQSIERSHRIAAETDQIGSEIIEELGEQRDQLERTKSRLVNTNENL 188
Query: 66 SRSRRMIQAIRRRVFYNKLFLIMIIVIESMTLSVMLYLKIFK 107
S+SR++++++ R+V NKL L +IIV+E L ++Y K F+
Sbjct: 189 SKSRKILRSMSRKVITNKLLLSVIIVLELAILVGLVYYKFFR 230
>sp|Q2KIU0|VTI1B_BOVIN Vesicle transport through interaction with t-SNAREs homolog 1B
OS=Bos taurus GN=VTI1B PE=2 SV=1
Length = 232
Score = 69.7 bits (169), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 38/103 (36%), Positives = 66/103 (64%)
Query: 6 RETLRETNQALVRTGESIVRSEQAALEAEAIGTGVISELGVQREALVRARDRLVDTDLHV 65
R L + +L R +SI RS + A E + IG+ +I ELG QR+ L R + RLV+T ++
Sbjct: 129 RALLLQGTDSLNRATQSIERSHRIAAETDQIGSEIIEELGEQRDQLERTKSRLVNTSENL 188
Query: 66 SRSRRMIQAIRRRVFYNKLFLIMIIVIESMTLSVMLYLKIFKK 108
S+SR++++++ R+V NKL L ++I++E L ++Y K ++
Sbjct: 189 SKSRKILRSMSRKVTTNKLLLSIVILLELAILGGLVYYKFLRR 231
>sp|Q9UEU0|VTI1B_HUMAN Vesicle transport through interaction with t-SNAREs homolog 1B
OS=Homo sapiens GN=VTI1B PE=1 SV=3
Length = 232
Score = 60.8 bits (146), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 38/94 (40%), Positives = 64/94 (68%)
Query: 14 QALVRTGESIVRSEQAALEAEAIGTGVISELGVQREALVRARDRLVDTDLHVSRSRRMIQ 73
++L R +SI RS + A E + IG+ +I ELG QR+ L R + RLV+T ++S+SR++++
Sbjct: 137 ESLNRATQSIERSHRIATETDQIGSEIIEELGEQRDQLERTKSRLVNTSENLSKSRKILR 196
Query: 74 AIRRRVFYNKLFLIMIIVIESMTLSVMLYLKIFK 107
++ R+V NKL L +II++E L ++Y K F+
Sbjct: 197 SMSRKVTTNKLLLSIIILLELAILGGLVYYKFFR 230
>sp|O89116|VTI1A_MOUSE Vesicle transport through interaction with t-SNAREs homolog 1A
OS=Mus musculus GN=Vti1a PE=1 SV=1
Length = 217
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 57/102 (55%), Gaps = 2/102 (1%)
Query: 5 HRETLRETNQALVRTGESIVRSEQAALEAEAIGTGVISELGVQREALVRARDRLVDTDLH 64
R L + + L R+ + Q A+E E IG ++ L RE + RARDRL D D +
Sbjct: 114 QRAHLLDNTERLERSSRRLEAGYQIAVETEQIGQEMLENLSHDREKIQRARDRLRDADAN 173
Query: 65 VSRSRRMIQAIRRRVFYNKLFLIM--IIVIESMTLSVMLYLK 104
+ +S R++ + RR+ N++ L++ IIV+ ++ ++ ++K
Sbjct: 174 LGKSSRILTGMLRRIIQNRILLVILGIIVVIAILTAIAFFVK 215
>sp|Q9LVP9|VTI13_ARATH Vesicle transport v-SNARE 13 OS=Arabidopsis thaliana GN=VTI13 PE=2
SV=1
Length = 221
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 52/90 (57%)
Query: 16 LVRTGESIVRSEQAALEAEAIGTGVISELGVQREALVRARDRLVDTDLHVSRSRRMIQAI 75
L RT + I S + LE E +G ++ +L QR++L+RA + L D +V +S++++ +
Sbjct: 130 LGRTTDRIKDSRRTILETEELGVSILQDLHGQRQSLLRAHETLHGVDDNVGKSKKILTTM 189
Query: 76 RRRVFYNKLFLIMIIVIESMTLSVMLYLKI 105
RR+ NK + II + + + +LY K+
Sbjct: 190 TRRMNRNKWTIGAIITVLVLAIIFILYFKL 219
>sp|Q96AJ9|VTI1A_HUMAN Vesicle transport through interaction with t-SNAREs homolog 1A
OS=Homo sapiens GN=VTI1A PE=1 SV=2
Length = 217
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 50/88 (56%)
Query: 5 HRETLRETNQALVRTGESIVRSEQAALEAEAIGTGVISELGVQREALVRARDRLVDTDLH 64
R L + + L R+ + Q A+E E IG ++ L RE + RAR+RL +TD +
Sbjct: 114 QRAHLLDNTERLERSSRRLEAGYQIAVETEQIGQEMLENLSHDREKIQRARERLRETDAN 173
Query: 65 VSRSRRMIQAIRRRVFYNKLFLIMIIVI 92
+ +S R++ + RR+ N++ L+++ +I
Sbjct: 174 LGKSSRILTGMLRRIIQNRILLVILGII 201
>sp|Q9JI51|VTI1A_RAT Vesicle transport through interaction with t-SNAREs homolog 1A
OS=Rattus norvegicus GN=Vti1a PE=1 SV=1
Length = 224
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 51/91 (56%), Gaps = 7/91 (7%)
Query: 9 LRETNQALVRTGESIVRSE-------QAALEAEAIGTGVISELGVQREALVRARDRLVDT 61
LRE L+ E + RS Q A+E E IG ++ L RE + RAR+RL +T
Sbjct: 118 LREERAHLLDNTERLERSSRRLEAGYQIAVETEQIGQEMLENLSHDRERIQRARERLRET 177
Query: 62 DLHVSRSRRMIQAIRRRVFYNKLFLIMIIVI 92
D ++ +S R++ + RR+ N++ L+++ +I
Sbjct: 178 DANLGKSSRILTGMLRRIIQNRILLVILGII 208
>sp|Q54CK6|VTI1A_DICDI Vesicle transport through interaction with t-SNAREs homolog 1A
OS=Dictyostelium discoideum GN=vti1A PE=1 SV=1
Length = 217
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 47/79 (59%)
Query: 6 RETLRETNQALVRTGESIVRSEQAALEAEAIGTGVISELGVQREALVRARDRLVDTDLHV 65
R+ L + + L T + ++R+ Q + ++E IG ++ +LG Q E + RD+L +TD +
Sbjct: 116 RQHLLQGSNMLDSTSDRLLRTHQISAQSEQIGQNILMDLGKQGEQIRGMRDKLHETDDQI 175
Query: 66 SRSRRMIQAIRRRVFYNKL 84
+R+++ I RR+ NK+
Sbjct: 176 KSARKIMTGIARRLATNKV 194
>sp|Q9SEL6|VTI11_ARATH Vesicle transport v-SNARE 11 OS=Arabidopsis thaliana GN=VTI11 PE=1
SV=2
Length = 221
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 53/92 (57%)
Query: 16 LVRTGESIVRSEQAALEAEAIGTGVISELGVQREALVRARDRLVDTDLHVSRSRRMIQAI 75
L RT + + S + +E E IG ++ +L QR++L+RA + L D ++ +S++++ +
Sbjct: 130 LGRTTDRVKDSRRTMMETEEIGVSILQDLHGQRQSLLRAHETLHGVDDNIGKSKKILTDM 189
Query: 76 RRRVFYNKLFLIMIIVIESMTLSVMLYLKIFK 107
RR+ NK + II+ + ++LY K+ K
Sbjct: 190 TRRMNKNKWTIGAIIIALIAAIFIILYFKLTK 221
>sp|Q9SEL5|VTI12_ARATH Vesicle transport v-SNARE 12 OS=Arabidopsis thaliana GN=VTI12 PE=1
SV=3
Length = 222
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 51/86 (59%), Gaps = 2/86 (2%)
Query: 16 LVRTGESIVRSEQAALEAEAIGTGVISELGVQREALVRARDRLVDTDLHVSRSRRMIQAI 75
L ++ + I S + LE E +G ++ +L QR+ L+ A ++L D + +S++++ A+
Sbjct: 131 LDQSSDRIRESRRLMLETEEVGISIVQDLSQQRQTLLHAHNKLHGVDDAIDKSKKVLTAM 190
Query: 76 RRRVFYNKLFLIMIIVIESMTLSVML 101
RR+ NK + +IV ++ L+++L
Sbjct: 191 SRRMTRNKWIITSVIV--ALVLAIIL 214
>sp|Q04338|VTI1_YEAST t-SNARE VTI1 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=VTI1 PE=1 SV=3
Length = 217
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 45/84 (53%)
Query: 1 MEKIHRETLRETNQALVRTGESIVRSEQAALEAEAIGTGVISELGVQREALVRARDRLVD 60
++ R+ L + L ++G+ + + + A E E IG+ ++ +L QRE L AR L
Sbjct: 112 IDDDQRQQLLSNHAILQKSGDRLKDASRIANETEGIGSQIMMDLRSQRETLENARQTLFQ 171
Query: 61 TDLHVSRSRRMIQAIRRRVFYNKL 84
D +V +S + ++ + RR+ NK
Sbjct: 172 ADSYVDKSIKTLKTMTRRLVANKF 195
>sp|P78768|VTI1_SCHPO Vesicle transport v-SNARE protein vti1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=vti1 PE=2 SV=2
Length = 214
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 45/77 (58%), Gaps = 1/77 (1%)
Query: 9 LRETNQALVRTGESIVRSEQAALEAEAIGTGVISELGVQREALVRARDRLVDTDLHVSRS 68
L+ TN+ L ++ + ++ S++ A E E IG ++ +L QR L + + L DT H+ RS
Sbjct: 118 LQGTNR-LEQSSQRLLESQRIANETEGIGASILRDLHGQRNQLEHSLEMLGDTSGHLDRS 176
Query: 69 RRMIQAIRRRVFYNKLF 85
R ++ + RR+ N+ F
Sbjct: 177 LRTLKTMARRLAMNRFF 193
>sp|Q7TM96|ZN622_RAT Zinc finger protein 622 OS=Rattus norvegicus GN=Znf622 PE=2 SV=2
Length = 386
Score = 32.0 bits (71), Expect = 1.1, Method: Composition-based stats.
Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 6/80 (7%)
Query: 5 HRETLRE--TNQALVRTGESI---VRSEQAALEAEAIGTGVISELGVQREALVRARDRLV 59
HR LR N A V T E VR+++A E E+ GT + ++ A A + +
Sbjct: 28 HRYNLRRKVANMAPV-TAEGFQERVRAQRAVAEEESKGTATYCTVCSKKFATFNAYENHL 86
Query: 60 DTDLHVSRSRRMIQAIRRRV 79
+ HV ++ +QA+ R+V
Sbjct: 87 KSRRHVELEKKAVQAVSRQV 106
>sp|P70705|ATP7A_RAT Copper-transporting ATPase 1 OS=Rattus norvegicus GN=Atp7a PE=1 SV=1
Length = 1492
Score = 30.4 bits (67), Expect = 3.7, Method: Composition-based stats.
Identities = 22/99 (22%), Positives = 48/99 (48%), Gaps = 1/99 (1%)
Query: 7 ETLRETNQALVRTGESIVRSEQAALEAEAIGTGVISELGVQREALVRARDRLVDTDLHVS 66
+ L+E + + G+ I S A+ + I G +++ ++ +V R+ L+D +
Sbjct: 1279 KQLQEEGKRVAMVGDGINDSPALAMASVGIAIGTGTDVAIEAADVVLIRNDLLDVVASID 1338
Query: 67 RSRRMIQAIRRRVFYNKLF-LIMIIVIESMTLSVMLYLK 104
SR+ ++ IR + ++ LI I + + L + L L+
Sbjct: 1339 LSRKTVKRIRINFVFALIYNLIGIPIAAGVFLPIGLVLQ 1377
>sp|P95357|FTSX_NEIGO Cell division protein FtsX OS=Neisseria gonorrhoeae GN=ftsX PE=3
SV=1
Length = 305
Score = 29.6 bits (65), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
Query: 63 LHVSRSRRMIQAIRRRVFYNKLFLIMIIVIESMTLSVMLYLKI 105
LHV +R ++ + R+ F L LIM+ V +MTL + +YL I
Sbjct: 9 LHVESARSALKQLLRQPFGTLLTLIMLAV--AMTLPLFMYLGI 49
>sp|O29777|COPA_ARCFU Probable copper-exporting P-type ATPase A OS=Archaeoglobus fulgidus
(strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC
100126) GN=copA PE=1 SV=1
Length = 804
Score = 29.6 bits (65), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 33/56 (58%), Gaps = 2/56 (3%)
Query: 35 AIGTGVISELGVQREALVRARDRLVDTDLHVSRSRRMIQAIRRRVFYNKLFLIMII 90
A+G+G S++ V+ +V RD L D + SR+ + I++ +F+ ++ +++I
Sbjct: 634 AVGSG--SDVAVESGDIVLIRDDLRDVVAAIQLSRKTMSKIKQNIFWALIYNVILI 687
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.326 0.137 0.354
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,084,391
Number of Sequences: 539616
Number of extensions: 897480
Number of successful extensions: 4280
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 4261
Number of HSP's gapped (non-prelim): 29
length of query: 109
length of database: 191,569,459
effective HSP length: 77
effective length of query: 32
effective length of database: 150,019,027
effective search space: 4800608864
effective search space used: 4800608864
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 55 (25.8 bits)