Query psy6549
Match_columns 109
No_of_seqs 102 out of 477
Neff 7.2
Searched_HMMs 29240
Date Fri Aug 16 20:49:53 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6549.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6549hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2nps_C Vesicle transport throu 99.9 4.3E-26 1.5E-30 143.3 8.7 80 4-83 2-81 (81)
2 1gl2_C VTI1B, vesicle transpor 99.8 3.9E-20 1.3E-24 111.6 7.0 64 14-77 2-65 (65)
3 1n7s_C SNAP-25A; neuronal snar 99.7 2.8E-16 9.7E-21 97.9 10.2 68 10-77 12-79 (79)
4 1nhl_A Synaptosomal-associated 99.5 8.4E-14 2.9E-18 80.9 6.8 52 24-75 3-54 (54)
5 3b5n_C Protein transport prote 99.2 1.1E-10 3.8E-15 70.9 9.6 62 16-77 7-68 (70)
6 1l4a_C S-SNAP25 fusion protein 99.2 3.1E-11 1.1E-15 75.7 6.4 65 12-76 18-82 (83)
7 3hd7_B Syntaxin-1A; membrane p 98.4 1.8E-05 6.3E-10 51.3 13.4 78 16-93 16-96 (109)
8 3hd7_A Vesicle-associated memb 98.2 9.7E-05 3.3E-09 46.5 12.7 84 20-103 4-87 (91)
9 2kog_A Vesicle-associated memb 97.3 7.5E-05 2.6E-09 49.3 1.6 85 19-103 31-115 (119)
10 3hd7_A Vesicle-associated memb 97.3 0.0089 3.1E-07 37.3 11.0 85 12-102 3-90 (91)
11 3b5n_D Protein transport prote 96.8 0.014 4.9E-07 34.2 8.0 58 17-74 6-63 (64)
12 2nps_D Syntaxin-6; vesicle fus 96.6 0.013 4.4E-07 35.8 7.5 66 14-79 12-77 (82)
13 1sfc_D Protein (SNAP-25B), pro 96.6 0.02 6.8E-07 35.4 8.3 64 14-77 22-85 (87)
14 1gl2_D Syntaxin 8, vesicle tra 96.6 0.013 4.5E-07 34.1 7.2 61 16-76 4-64 (65)
15 1n7s_D SNAP-25A; neuronal snar 96.4 0.048 1.6E-06 31.7 8.8 59 17-75 6-64 (66)
16 1l4a_D S-SNAP25 fusion protein 96.2 0.026 8.8E-07 35.0 6.8 62 15-76 24-85 (87)
17 1jth_B Syntaxin 1A; coiled-coi 93.3 0.73 2.5E-05 27.3 9.5 61 18-78 7-67 (77)
18 2nps_B Syntaxin 13, vesicle-as 90.2 1.7 5.9E-05 25.3 9.0 57 22-78 7-63 (71)
19 1gl2_B Syntaxin 7; membrane pr 89.9 1.7 5.9E-05 24.9 8.5 53 22-74 10-62 (65)
20 3b5n_B Protein SSO1; snare com 89.2 2.1 7.1E-05 24.8 9.6 59 18-76 7-65 (69)
21 1n7s_B Syntaxin 1A; neuronal s 88.0 2.5 8.7E-05 24.3 9.6 58 17-74 8-65 (68)
22 2kog_A Vesicle-associated memb 86.8 1.2 4E-05 28.9 4.7 83 13-101 32-117 (119)
23 3ljc_A ATP-dependent protease 83.7 7.4 0.00025 27.6 8.2 61 1-61 182-251 (252)
24 2l2t_A Receptor tyrosine-prote 82.8 2 6.8E-05 23.2 3.7 9 99-107 28-36 (44)
25 1sfc_B Protein (syntaxin 1A), 82.5 5.9 0.0002 23.7 9.7 60 17-76 17-76 (83)
26 2ks1_B Epidermal growth factor 80.4 1.4 4.7E-05 23.8 2.5 9 99-107 29-37 (44)
27 1sfc_A VAMP 2, protein (synapt 80.2 8.2 0.00028 23.8 8.9 64 19-82 28-91 (96)
28 1n7s_A Vesicle-associated memb 78.5 7 0.00024 22.1 8.8 59 20-78 3-61 (63)
29 2l8s_A Integrin alpha-1; trans 77.9 4.2 0.00014 22.8 4.1 7 103-109 33-39 (54)
30 2knc_A Integrin alpha-IIB; tra 77.6 4.2 0.00014 22.8 4.1 6 104-109 37-42 (54)
31 3b5n_A Synaptobrevin homolog 1 77.6 7.4 0.00025 21.9 9.0 58 21-78 2-59 (61)
32 2nps_A VAMP-4, vesicle-associa 74.9 10 0.00035 22.1 5.6 62 20-81 7-68 (74)
33 2iub_A CORA, divalent cation t 72.9 27 0.00091 26.0 9.7 22 88-109 340-361 (363)
34 2jwa_A Receptor tyrosine-prote 72.6 6.9 0.00024 21.0 3.9 24 85-108 14-37 (44)
35 2k1a_A Integrin alpha-IIB; sin 71.9 6 0.00021 21.0 3.6 6 104-109 35-40 (42)
36 2ks1_B Epidermal growth factor 70.1 7.4 0.00025 20.8 3.7 9 96-104 29-37 (44)
37 1nhl_A Synaptosomal-associated 68.8 10 0.00036 20.8 4.3 20 15-34 22-41 (54)
38 2l2t_A Receptor tyrosine-prote 68.1 8.5 0.00029 20.6 3.7 8 96-103 28-35 (44)
39 1l4a_A Synaptobrevin; snare, s 68.0 7.4 0.00025 23.1 3.8 60 20-79 14-73 (80)
40 3vkg_A Dynein heavy chain, cyt 66.3 1E+02 0.0035 30.2 14.8 73 6-78 2013-2085(3245)
41 1n7s_C SNAP-25A; neuronal snar 65.4 17 0.00058 21.6 5.1 16 12-27 21-36 (79)
42 1q90_R Cytochrome B6-F complex 65.0 13 0.00046 20.3 4.2 18 74-91 8-25 (49)
43 2k1k_A Ephrin type-A receptor 63.1 11 0.00039 19.3 3.5 10 98-107 28-37 (38)
44 2l6w_A Beta-type platelet-deri 67.0 1.5 5.2E-05 23.0 0.0 12 97-108 24-35 (39)
45 2knc_B Integrin beta-3; transm 61.8 11 0.00039 22.5 3.8 10 95-104 24-33 (79)
46 2lk9_A Bone marrow stromal ant 61.5 11 0.00038 19.1 3.1 9 84-92 5-13 (35)
47 2k9j_B Integrin beta-3; transm 55.9 21 0.0007 18.8 3.8 14 92-105 20-33 (43)
48 3c98_B Syntaxin-1A; protein co 55.7 2.6 9.1E-05 29.4 0.2 61 13-73 204-264 (279)
49 1m56_D Cytochrome C oxidase; m 52.8 19 0.00065 19.8 3.4 18 84-101 31-48 (51)
50 1urq_A M-tomosyn isoform; tran 51.1 32 0.0011 19.5 7.4 50 22-71 5-54 (63)
51 1fjk_A Cardiac phospholamban; 50.0 29 0.001 18.7 4.3 23 76-98 24-46 (52)
52 1qle_D Cytochrome AA3, ccytoch 49.9 18 0.00061 19.2 2.9 15 84-98 23-37 (43)
53 1pi7_A VPU protein, U ORF prot 49.8 25 0.00086 17.9 3.9 11 97-107 24-34 (36)
54 1svf_B Protein (fusion glycopr 49.3 16 0.00054 18.8 2.6 24 51-74 14-37 (38)
55 3vou_A ION transport 2 domain 48.1 52 0.0018 21.1 5.9 39 65-103 8-46 (148)
56 4ev6_A Magnesium transport pro 46.3 83 0.0029 23.0 12.2 19 91-109 319-337 (339)
57 1gl2_C VTI1B, vesicle transpor 46.3 39 0.0013 19.1 7.4 56 8-63 3-58 (65)
58 2rdd_B UPF0092 membrane protei 43.3 19 0.00064 18.2 2.3 10 97-106 12-21 (37)
59 1gl2_A Endobrevin; membrane pr 42.8 44 0.0015 18.8 6.8 47 18-64 6-52 (65)
60 2klu_A T-cell surface glycopro 40.2 40 0.0014 19.7 3.6 21 87-107 14-36 (70)
61 3hd7_B Syntaxin-1A; membrane p 40.1 65 0.0022 19.9 13.1 33 49-81 56-88 (109)
62 3arc_L Photosystem II reaction 38.0 42 0.0014 17.1 3.3 19 85-103 17-35 (37)
63 1cd1_A CD1, MCD1D.1; immunolog 37.9 6.8 0.00023 28.7 0.0 13 87-99 288-300 (315)
64 2q67_A Potassium channel prote 37.1 73 0.0025 19.6 5.7 37 67-103 7-43 (114)
65 1u6h_B Talin; protein-protein 36.5 23 0.00077 17.5 1.8 25 3-27 2-26 (31)
66 2oez_A UPF0289 protein VP2528; 35.2 88 0.003 22.5 5.6 64 24-87 42-121 (247)
67 2ww9_B Protein transport prote 34.9 73 0.0025 19.0 4.7 45 61-105 25-72 (80)
68 3vmt_A Monofunctional glycosyl 32.5 20 0.00067 26.3 1.7 34 72-105 24-57 (263)
69 3arc_X Photosystem II PSBX pro 32.5 56 0.0019 16.9 3.6 18 86-103 14-31 (39)
70 3arc_T Photosystem II reaction 32.5 50 0.0017 16.4 2.8 13 95-107 12-24 (32)
71 1rh5_B Preprotein translocase 31.7 81 0.0028 18.5 4.8 47 59-105 10-59 (74)
72 1ifl_A Inovirus; helical virus 31.7 54 0.0018 18.1 3.0 21 86-106 28-49 (53)
73 3j1r_A Archaeal adhesion filam 31.7 46 0.0016 15.7 3.6 7 99-105 19-25 (26)
74 1pfi_A Major coat protein of P 31.4 62 0.0021 17.1 3.5 20 89-108 26-45 (46)
75 2gsm_B Cytochrome C oxidase su 31.0 1.1E+02 0.0036 22.1 5.4 21 84-104 35-55 (262)
76 1dn1_B Syntaxin 1A, syntaxin b 29.8 16 0.00056 26.3 0.9 54 21-74 200-253 (267)
77 3l9k_W Dynein intermediate cha 28.8 65 0.0022 16.5 3.8 27 1-27 1-30 (38)
78 2nps_C Vesicle transport throu 28.6 93 0.0032 18.2 8.9 54 7-61 12-66 (81)
79 2w1k_A Putative sortase; pilus 28.6 12 0.00041 27.0 0.0 23 84-106 225-247 (252)
80 2c5k_T Syntaxin TLG1, T-snare 28.3 65 0.0022 19.6 3.4 13 14-26 46-58 (95)
81 1v54_D Cytochrome C oxidase su 27.7 79 0.0027 21.0 4.0 24 83-106 79-102 (147)
82 3bz1_X Photosystem II PSBX pro 26.9 73 0.0025 17.4 3.0 16 86-101 24-39 (50)
83 3hb3_B Cytochrome C oxidase su 25.5 1.5E+02 0.005 21.9 5.4 21 84-104 66-86 (298)
84 2j5l_A Apical membrane antigen 25.5 15 0.0005 29.8 0.0 26 82-108 510-537 (581)
85 2jo1_A Phospholemman; FXYD1, N 24.0 1E+02 0.0034 18.1 3.5 14 92-105 27-40 (72)
86 1vcs_A Vesicle transport throu 23.4 82 0.0028 19.2 3.2 23 55-77 37-59 (102)
87 2qyw_A Vesicle transport throu 23.4 82 0.0028 19.3 3.2 23 55-77 48-70 (102)
88 1oed_B Acetylcholine receptor 23.4 94 0.0032 22.2 4.0 23 79-101 217-239 (250)
89 2wwb_B SEC61gamma, protein tra 22.6 91 0.0031 18.0 3.1 46 60-105 10-58 (68)
90 2y69_D Cytochrome C oxidase su 22.3 1.1E+02 0.0038 20.8 4.0 24 83-106 101-124 (169)
91 3vkg_A Dynein heavy chain, cyt 22.0 5.9E+02 0.02 25.2 12.3 20 5-24 1918-1937(3245)
92 2ifo_A Inovirus; helical virus 21.2 83 0.0028 16.8 2.5 13 96-108 32-44 (46)
93 3htu_B Vacuolar protein-sortin 21.1 98 0.0033 15.9 3.4 21 40-60 10-30 (39)
94 3s8f_B Cytochrome C oxidase su 20.6 1E+02 0.0034 20.7 3.5 24 83-106 16-39 (168)
95 3zx6_A HAMP, methyl-accepting 20.5 2.5E+02 0.0086 20.4 10.8 62 14-75 220-281 (341)
96 2jp3_A FXYD domain-containing 20.5 61 0.0021 18.8 2.0 10 95-104 31-40 (67)
97 2xhe_B Syntaxin1; exocytosis, 20.2 18 0.00061 26.0 -0.5 55 21-75 217-271 (279)
No 1
>2nps_C Vesicle transport through interaction with T- snares homolog 1A; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus}
Probab=99.93 E-value=4.3e-26 Score=143.28 Aligned_cols=80 Identities=31% Similarity=0.514 Sum_probs=77.1
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHhhhHHHHHHHHHHHHHHHHHHHhhH
Q psy6549 4 IHRETLRETNQALVRTGESIVRSEQAALEAEAIGTGVISELGVQREALVRARDRLVDTDLHVSRSRRMIQAIRRRVFYNK 83 (109)
Q Consensus 4 ~~R~~ll~~~~~l~~t~~~L~~s~~~~~ete~iG~~il~~L~~Qre~L~~~~~~~~~i~~~l~~a~~~l~~m~rr~~~~K 83 (109)
+||++||++++++++++++|.+|++++.|||++|.+|+++|+.|||+|.+++++++++|+++++|+++|+.|.||+++||
T Consensus 2 ~qR~~Ll~~t~~L~rt~~~L~~s~r~~~ETE~iG~~il~~L~~QRE~l~~~~~~l~~~d~~l~~s~k~l~~M~rr~~~nK 81 (81)
T 2nps_C 2 SMRAHLLDNTERLERSSRRLEAGYQIAVETEQIGQEMLENLSHDRERIQRARERLRETDANLGKSSRILTGMLRRIIQNR 81 (81)
T ss_dssp TTTTHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC--
T ss_pred cHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHhCC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999987
No 2
>1gl2_C VTI1B, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1
Probab=99.81 E-value=3.9e-20 Score=111.64 Aligned_cols=64 Identities=41% Similarity=0.662 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHhhhHHHHHHHHHHHHHHHH
Q psy6549 14 QALVRTGESIVRSEQAALEAEAIGTGVISELGVQREALVRARDRLVDTDLHVSRSRRMIQAIRR 77 (109)
Q Consensus 14 ~~l~~t~~~L~~s~~~~~ete~iG~~il~~L~~Qre~L~~~~~~~~~i~~~l~~a~~~l~~m~r 77 (109)
++|++++++|.+|.+++.|||++|.+|+.+|++|||+|.+++++++++|+++++|+++|+.|.|
T Consensus 2 ~rL~~t~~~l~~s~ri~~ETE~iG~~~l~~L~~QREql~~t~~~l~~~d~~l~~s~k~L~~m~R 65 (65)
T 1gl2_C 2 SHMNRATQSIERSHRIATETDQIGTEIIEELGEQRDQLERTKSRLVNTNENLSKSRKILRSMSR 65 (65)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHhHHHhHHhHHHHHHHHHHhhcC
Confidence 5789999999999999999999999999999999999999999999999999999999999976
No 3
>1n7s_C SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1sfc_C 1urq_C 3hd7_C* 3hd9_C 3ipd_C 3rk2_C 3rk3_C 3rl0_C 1kil_C 1jth_A
Probab=99.69 E-value=2.8e-16 Score=97.94 Aligned_cols=68 Identities=19% Similarity=0.219 Sum_probs=64.8
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHhhhHHHHHHHHHHHHHHHH
Q psy6549 10 RETNQALVRTGESIVRSEQAALEAEAIGTGVISELGVQREALVRARDRLVDTDLHVSRSRRMIQAIRR 77 (109)
Q Consensus 10 l~~~~~l~~t~~~L~~s~~~~~ete~iG~~il~~L~~Qre~L~~~~~~~~~i~~~l~~a~~~l~~m~r 77 (109)
..+++.++++++++.+|.+++.||+++|.+|+.+|+.|||+|.++++.++++++++++|.++|+.|.+
T Consensus 12 ~~~~~~~~~s~~s~~~~l~~a~Ete~~G~~Tl~~L~~Q~Eql~r~~~~ld~i~~~l~~a~k~L~~m~k 79 (79)
T 1n7s_C 12 RRADQLADESLESTRRMLQLVEESKDAGIRTLVMLDEQGEQLDRVEEGMNHINQDMKEAEKNLKDLGK 79 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHhHHHHHHHHHhhhcC
Confidence 34778899999999999999999999999999999999999999999999999999999999999963
No 4
>1nhl_A Synaptosomal-associated protein 23; snare, coiled-coil, protein transport; 2.30A {Homo sapiens} SCOP: h.1.15.1
Probab=99.49 E-value=8.4e-14 Score=80.88 Aligned_cols=52 Identities=21% Similarity=0.302 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHhhhHHHHHHHHHHHHHH
Q psy6549 24 VRSEQAALEAEAIGTGVISELGVQREALVRARDRLVDTDLHVSRSRRMIQAI 75 (109)
Q Consensus 24 ~~s~~~~~ete~iG~~il~~L~~Qre~L~~~~~~~~~i~~~l~~a~~~l~~m 75 (109)
.+|.+++.||+++|.+++.+|+.|||+|.++++.++++++++++|.++|++|
T Consensus 3 ~~~~~l~~ese~~g~~Tl~~L~~QgEql~r~~~~ld~i~~~l~~a~k~L~~m 54 (54)
T 1nhl_A 3 RRILGLAIESQDAGIKTITMLDEQKEQLNRIEEGLDQINKDMRETEKTLTEL 54 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHhHHHHHHhHHHHHHHHHhcC
Confidence 6899999999999999999999999999999999999999999999999864
No 5
>3b5n_C Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=99.23 E-value=1.1e-10 Score=70.93 Aligned_cols=62 Identities=18% Similarity=0.184 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHhhhHHHHHHHHHHHHHHHH
Q psy6549 16 LVRTGESIVRSEQAALEAEAIGTGVISELGVQREALVRARDRLVDTDLHVSRSRRMIQAIRR 77 (109)
Q Consensus 16 l~~t~~~L~~s~~~~~ete~iG~~il~~L~~Qre~L~~~~~~~~~i~~~l~~a~~~l~~m~r 77 (109)
-+++.++-.++.+++.|++++|..++..|+.|+|+|.+++..+++++.++..|.+.++.+..
T Consensus 7 ~~esl~STrr~L~~a~e~e~~g~~Tl~~L~~QgEqL~rtE~~ld~i~~~~k~aek~l~~Lk~ 68 (70)
T 3b5n_C 7 KQSSVASTRNTLKMAQDAERAGMNTLGMLGHQSEQLNNVEGNLDLMKVQNKVADEKVAELKK 68 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 46778899999999999999999999999999999999999999999999999999998864
No 6
>1l4a_C S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=99.21 E-value=3.1e-11 Score=75.65 Aligned_cols=65 Identities=20% Similarity=0.197 Sum_probs=59.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHhhhHHHHHHHHHHHHHHH
Q psy6549 12 TNQALVRTGESIVRSEQAALEAEAIGTGVISELGVQREALVRARDRLVDTDLHVSRSRRMIQAIR 76 (109)
Q Consensus 12 ~~~~l~~t~~~L~~s~~~~~ete~iG~~il~~L~~Qre~L~~~~~~~~~i~~~l~~a~~~l~~m~ 76 (109)
.....+.+.++..++.+++.|++++|..++..|+.|+|+|.++...+++|+.++.+|.+.|+.|.
T Consensus 18 ~~~~~~esl~STrr~l~l~~es~~~g~~Tl~~L~~QgEQL~rie~~ld~I~~dl~~Aek~L~~L~ 82 (83)
T 1l4a_C 18 CNQVTDDSLESTRRMLNMCEESKEAGIRTLVMLDEQGEQLDRIEEGLDQINQDMKDAEKNLEGME 82 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSGGGCTTC--
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 44556789999999999999999999999999999999999999999999999999999887764
No 7
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=98.41 E-value=1.8e-05 Score=51.34 Aligned_cols=78 Identities=15% Similarity=0.116 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHhhhHHHHHHHHHHHHHH---HHHHHhhHHHHHHHHHH
Q psy6549 16 LVRTGESIVRSEQAALEAEAIGTGVISELGVQREALVRARDRLVDTDLHVSRSRRMIQAI---RRRVFYNKLFLIMIIVI 92 (109)
Q Consensus 16 l~~t~~~L~~s~~~~~ete~iG~~il~~L~~Qre~L~~~~~~~~~i~~~l~~a~~~l~~m---~rr~~~~K~il~~ii~~ 92 (109)
+.+-.+.+.+-++.+.|..++=.+...-..+|.|.+.++..+++++..++..|.+-++.- .++..+.+|++.+++++
T Consensus 16 i~eR~~eI~~Ie~~I~eL~~iF~dla~lV~eQge~Id~Ie~nv~~a~~~v~~g~~eL~kA~~yqk~~rkk~~i~l~~~~i 95 (109)
T 3hd7_B 16 IETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSKARRKKIMIIICCVI 95 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcceehHHHHHH
Confidence 344456677777788888888888888999999999999999999999999999888654 33344444444443333
Q ss_pred H
Q psy6549 93 E 93 (109)
Q Consensus 93 l 93 (109)
+
T Consensus 96 ~ 96 (109)
T 3hd7_B 96 L 96 (109)
T ss_dssp H
T ss_pred H
Confidence 3
No 8
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=98.20 E-value=9.7e-05 Score=46.51 Aligned_cols=84 Identities=11% Similarity=0.170 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHhhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q psy6549 20 GESIVRSEQAALEAEAIGTGVISELGVQREALVRARDRLVDTDLHVSRSRRMIQAIRRRVFYNKLFLIMIIVIESMTLSV 99 (109)
Q Consensus 20 ~~~L~~s~~~~~ete~iG~~il~~L~~Qre~L~~~~~~~~~i~~~l~~a~~~l~~m~rr~~~~K~il~~ii~~l~l~i~~ 99 (109)
++.+...+.-++|+.++-.+-.+.+-+..|.|....++.++..+.-..=.+.-+.+.|+++-..+=+++++++.++++++
T Consensus 4 ~d~l~~vq~ev~evk~iM~~NI~kvL~RgekL~~L~~kt~~L~~~s~~F~~~A~~l~rkmwwkn~K~~iii~~iv~~il~ 83 (91)
T 3hd7_A 4 MRRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKYWWKNLKMMIILGVICAIILI 83 (91)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677778888888888888888899999999999999888888777666666666677655533333333333333333
Q ss_pred HHHH
Q psy6549 100 MLYL 103 (109)
Q Consensus 100 viy~ 103 (109)
+++.
T Consensus 84 ii~~ 87 (91)
T 3hd7_A 84 IIIV 87 (91)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 3333
No 9
>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus}
Probab=97.30 E-value=7.5e-05 Score=49.28 Aligned_cols=85 Identities=11% Similarity=0.189 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHhhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q psy6549 19 TGESIVRSEQAALEAEAIGTGVISELGVQREALVRARDRLVDTDLHVSRSRRMIQAIRRRVFYNKLFLIMIIVIESMTLS 98 (109)
Q Consensus 19 t~~~L~~s~~~~~ete~iG~~il~~L~~Qre~L~~~~~~~~~i~~~l~~a~~~l~~m~rr~~~~K~il~~ii~~l~l~i~ 98 (109)
+.+.|...+.-++|+.++-.+-.+.+-+..|.|....++.++....-..=.+.-+.+.|+++-.++=+++++++++++++
T Consensus 31 ~~d~l~~vq~evdeVk~IM~~NIdkvLeRGEkLd~L~~KTe~L~~~S~~F~k~A~kl~rkmwwkn~K~~iii~~iv~iii 110 (119)
T 2kog_A 31 SNRRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKYWWKNLKMMIILGVICAIIL 110 (119)
T ss_dssp SCSHHHHSSHHHHHHHHHHHHHHHHHHCCCCSSCCCCSCCSCCCSSSHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677788888888888888888999999999999988888877766666666677777776666655555555444444
Q ss_pred HHHHH
Q psy6549 99 VMLYL 103 (109)
Q Consensus 99 ~viy~ 103 (109)
++|+.
T Consensus 111 ~iIi~ 115 (119)
T 2kog_A 111 IIIIV 115 (119)
T ss_dssp HHHHH
T ss_pred HHhhh
Confidence 44443
No 10
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=97.27 E-value=0.0089 Score=37.34 Aligned_cols=85 Identities=13% Similarity=0.071 Sum_probs=62.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhhHHHHHHhhhHhhhHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q psy6549 12 TNQALVRTGESIVRSEQAALEAEAIGT---GVISELGVQREALVRARDRLVDTDLHVSRSRRMIQAIRRRVFYNKLFLIM 88 (109)
Q Consensus 12 ~~~~l~~t~~~L~~s~~~~~ete~iG~---~il~~L~~Qre~L~~~~~~~~~i~~~l~~a~~~l~~m~rr~~~~K~il~~ 88 (109)
+++++.+..+.+++.+.++.+..+--. +-++.|.+..|.|........ ..|+++=+.|-.+-++-++++.+
T Consensus 3 ~~d~l~~vq~ev~evk~iM~~NI~kvL~RgekL~~L~~kt~~L~~~s~~F~------~~A~~l~rkmwwkn~K~~iii~~ 76 (91)
T 3hd7_A 3 HMRRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFE------TSAAKLKRKYWWKNLKMMIILGV 76 (91)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 567888899999999999888866432 345677777777766544443 56777788899999999888888
Q ss_pred HHHHHHHHHHHHHH
Q psy6549 89 IIVIESMTLSVMLY 102 (109)
Q Consensus 89 ii~~l~l~i~~viy 102 (109)
++++++++|++.++
T Consensus 77 iv~~il~ii~~~~~ 90 (91)
T 3hd7_A 77 ICAIILIIIIVYFS 90 (91)
T ss_dssp HHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHh
Confidence 77777666665443
No 11
>3b5n_D Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae}
Probab=96.76 E-value=0.014 Score=34.19 Aligned_cols=58 Identities=12% Similarity=0.159 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHhhhHHHHHHHHHHHHH
Q psy6549 17 VRTGESIVRSEQAALEAEAIGTGVISELGVQREALVRARDRLVDTDLHVSRSRRMIQA 74 (109)
Q Consensus 17 ~~t~~~L~~s~~~~~ete~iG~~il~~L~~Qre~L~~~~~~~~~i~~~l~~a~~~l~~ 74 (109)
++.-+.|+.-..++.-...+|..+-+++..|.++|.++..+++.++..+..+++-|..
T Consensus 6 ~e~D~nLd~l~~~~~rlk~ma~~mg~Eid~QN~~ldrI~~k~d~~d~ri~~~~~Rl~~ 63 (64)
T 3b5n_D 6 LEIDRNLDQIQQVSNRLKKMALTTGKELDSQQKRLNNIEESTDDLDINLHMNTNRLAG 63 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4556777888888888899999999999999999999999999999999998876653
No 12
>2nps_D Syntaxin-6; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Homo sapiens}
Probab=96.65 E-value=0.013 Score=35.82 Aligned_cols=66 Identities=11% Similarity=0.010 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHhhhHHHHHHHHHHHHHHHHHH
Q psy6549 14 QALVRTGESIVRSEQAALEAEAIGTGVISELGVQREALVRARDRLVDTDLHVSRSRRMIQAIRRRV 79 (109)
Q Consensus 14 ~~l~~t~~~L~~s~~~~~ete~iG~~il~~L~~Qre~L~~~~~~~~~i~~~l~~a~~~l~~m~rr~ 79 (109)
+.+.+.-+.|+.-...+....++|.++=.+|..|.+-|......++.+++-+..+.+-++.+.++.
T Consensus 12 ~~~~eQD~~Ld~L~~~v~~LK~~a~~Ig~El~~Qn~lLd~l~~~~d~~~~~L~~~~~r~~~~~~~~ 77 (82)
T 2nps_D 12 NMGRMQDEQLELVSGSIGVLKNMSQRIGGELEEQAVMLEDFSHELESTQSRLDNVMKKLAKVSHMT 77 (82)
T ss_dssp ------CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 444566677888888888999999999999999999999999999999999999999999888764
No 13
>1sfc_D Protein (SNAP-25B), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1
Probab=96.62 E-value=0.02 Score=35.39 Aligned_cols=64 Identities=6% Similarity=0.052 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHhhhHHHHHHHHHHHHHHHH
Q psy6549 14 QALVRTGESIVRSEQAALEAEAIGTGVISELGVQREALVRARDRLVDTDLHVSRSRRMIQAIRR 77 (109)
Q Consensus 14 ~~l~~t~~~L~~s~~~~~ete~iG~~il~~L~~Qre~L~~~~~~~~~i~~~l~~a~~~l~~m~r 77 (109)
...++.-+.|+.-...+....++|.++=.+|..|.+.|.++..+++.++..+..+++-++.+.+
T Consensus 22 ~~e~eqD~~Ld~Ls~~v~rLk~la~~ig~Eld~Qn~~Ld~i~~~~D~~~~rl~~~~~rl~~ll~ 85 (87)
T 1sfc_D 22 ARENEMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDEANQRATKMLG 85 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhh
Confidence 3445677888888888999999999999999999999999999999999999999887776543
No 14
>1gl2_D Syntaxin 8, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1
Probab=96.62 E-value=0.013 Score=34.09 Aligned_cols=61 Identities=13% Similarity=0.168 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHhhhHHHHHHHHHHHHHHH
Q psy6549 16 LVRTGESIVRSEQAALEAEAIGTGVISELGVQREALVRARDRLVDTDLHVSRSRRMIQAIR 76 (109)
Q Consensus 16 l~~t~~~L~~s~~~~~ete~iG~~il~~L~~Qre~L~~~~~~~~~i~~~l~~a~~~l~~m~ 76 (109)
+.+.-+.|+.-...+....++|.++-.++..|.+-|.+...+++.+++.+..+.+-++.+.
T Consensus 4 ~~eqD~~Ld~L~~~v~~lk~~a~~Ig~El~~Qn~lLd~l~~~~d~~~~~l~~~~~rl~~l~ 64 (65)
T 1gl2_D 4 MQEQDAGLDALSSIISRQKQMGQEIGNELDEQNEIIDDLANLVENTDEKLRTEARRVTLVD 64 (65)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4455667777788888889999999999999999999999999999999999887766553
No 15
>1n7s_D SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_D 3rk3_D 3rl0_D 1kil_D 3hd7_D* 3hd9_D 3ipd_D 1urq_D 1xtg_B
Probab=96.42 E-value=0.048 Score=31.72 Aligned_cols=59 Identities=7% Similarity=0.094 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHhhhHHHHHHHHHHHHHH
Q psy6549 17 VRTGESIVRSEQAALEAEAIGTGVISELGVQREALVRARDRLVDTDLHVSRSRRMIQAI 75 (109)
Q Consensus 17 ~~t~~~L~~s~~~~~ete~iG~~il~~L~~Qre~L~~~~~~~~~i~~~l~~a~~~l~~m 75 (109)
++.-+.|+.-...+....++|..+-.+|..|.+.|.++..+++.++..+..+.+-++.+
T Consensus 6 ~eqD~~Ld~L~~~v~~lk~la~~ig~El~~Qn~~Ld~l~~~~d~~~~~l~~~~~rl~~l 64 (66)
T 1n7s_D 6 NEMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDEANQRATKM 64 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 34556677777788888999999999999999999999999999999999988766653
No 16
>1l4a_D S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=96.16 E-value=0.026 Score=34.97 Aligned_cols=62 Identities=6% Similarity=0.094 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHhhhHHHHHHHHHHHHHHH
Q psy6549 15 ALVRTGESIVRSEQAALEAEAIGTGVISELGVQREALVRARDRLVDTDLHVSRSRRMIQAIR 76 (109)
Q Consensus 15 ~l~~t~~~L~~s~~~~~ete~iG~~il~~L~~Qre~L~~~~~~~~~i~~~l~~a~~~l~~m~ 76 (109)
+-++.-+.|+.-...+....++|.++-++|..|.+.|.++..+++.++..+..+++-++.+.
T Consensus 24 ~e~eqD~~Ld~ls~~l~rLk~mA~~mg~Eld~Qn~~LD~i~~~~D~~~~rl~~~n~r~~kll 85 (87)
T 1l4a_D 24 REDDMENNMKEVSSMIGNLRNMAIDMGNEIGSQNRQVDRIQQKAESNESRIDEANKKATKLL 85 (87)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTHHHHHHHHCC
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34556777888888888999999999999999999999999999999999999887776543
No 17
>1jth_B Syntaxin 1A; coiled-coil, polar layer, endocytosis-exocytosis complex; 2.00A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1hvv_A* 1urq_B
Probab=93.27 E-value=0.73 Score=27.35 Aligned_cols=61 Identities=13% Similarity=0.033 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHhhhHHHHHHHHHHHHHHHHH
Q psy6549 18 RTGESIVRSEQAALEAEAIGTGVISELGVQREALVRARDRLVDTDLHVSRSRRMIQAIRRR 78 (109)
Q Consensus 18 ~t~~~L~~s~~~~~ete~iG~~il~~L~~Qre~L~~~~~~~~~i~~~l~~a~~~l~~m~rr 78 (109)
.-.+.+.+-.+.+.|..++=.+...-...|.|.+.++..++.++..++..|..-|..-.+.
T Consensus 7 eR~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA~~~ 67 (77)
T 1jth_B 7 TRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKY 67 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344566666777777888778777888999999999999999999999999888775553
No 18
>2nps_B Syntaxin 13, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus}
Probab=90.18 E-value=1.7 Score=25.28 Aligned_cols=57 Identities=16% Similarity=0.181 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHhhhHHHHHHHHHHHHHHHHH
Q psy6549 22 SIVRSEQAALEAEAIGTGVISELGVQREALVRARDRLVDTDLHVSRSRRMIQAIRRR 78 (109)
Q Consensus 22 ~L~~s~~~~~ete~iG~~il~~L~~Qre~L~~~~~~~~~i~~~l~~a~~~l~~m~rr 78 (109)
.+.+-.+.+.|..++=.+...-...|.|.|.++..++..+..++..|..-|..-.+.
T Consensus 7 ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~kA~~~ 63 (71)
T 2nps_B 7 AIQQLEADILDVNQIFKDLAMMIHDQGDLIDSIEANVESSEVHVERASDQLQRAAYY 63 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556667777777777777778999999999999999999999999888765543
No 19
>1gl2_B Syntaxin 7; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1
Probab=89.94 E-value=1.7 Score=24.90 Aligned_cols=53 Identities=13% Similarity=0.182 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHhhhHHHHHHHHHHHHH
Q psy6549 22 SIVRSEQAALEAEAIGTGVISELGVQREALVRARDRLVDTDLHVSRSRRMIQA 74 (109)
Q Consensus 22 ~L~~s~~~~~ete~iG~~il~~L~~Qre~L~~~~~~~~~i~~~l~~a~~~l~~ 74 (109)
.+.+-.+.+.|..++=.+...-...|.|.+.++..++..+..++..|..-|+.
T Consensus 10 ~i~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~k 62 (65)
T 1gl2_B 10 SIRQLEADIMDINEIFKDLGMMIHEQGDVIDSIEANVESAEVHVQQANQQLSR 62 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666777777777777777899999999999999999999999987753
No 20
>3b5n_B Protein SSO1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=89.22 E-value=2.1 Score=24.82 Aligned_cols=59 Identities=12% Similarity=0.082 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHhhhHHHHHHHHHHHHHHH
Q psy6549 18 RTGESIVRSEQAALEAEAIGTGVISELGVQREALVRARDRLVDTDLHVSRSRRMIQAIR 76 (109)
Q Consensus 18 ~t~~~L~~s~~~~~ete~iG~~il~~L~~Qre~L~~~~~~~~~i~~~l~~a~~~l~~m~ 76 (109)
.-.+.+.+-.+.+.|..++=.+...-...|.|.+.++..++..+..++..|..-|+.=.
T Consensus 7 eR~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA~ 65 (69)
T 3b5n_B 7 ARHQELLKLEKSMAELTQLFNDMEELVIEQQENVDVIDKNVEDAQLDVEQGVGHTDKAV 65 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455666677777888887777777889999999999999999999999998876543
No 21
>1n7s_B Syntaxin 1A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_B 3rk3_B 3rl0_B 1kil_B
Probab=88.01 E-value=2.5 Score=24.33 Aligned_cols=58 Identities=14% Similarity=0.034 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHhhhHHHHHHHHHHHHH
Q psy6549 17 VRTGESIVRSEQAALEAEAIGTGVISELGVQREALVRARDRLVDTDLHVSRSRRMIQA 74 (109)
Q Consensus 17 ~~t~~~L~~s~~~~~ete~iG~~il~~L~~Qre~L~~~~~~~~~i~~~l~~a~~~l~~ 74 (109)
..-.+.+.+-.+.+.|..++=.+...-...|.+.+.++..++..+..++..|..-|+.
T Consensus 8 ~eR~~ei~~Ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~k 65 (68)
T 1n7s_B 8 ETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKK 65 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344556666777777788877777777899999999999999999999999987754
No 22
>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus}
Probab=86.83 E-value=1.2 Score=28.90 Aligned_cols=83 Identities=14% Similarity=0.084 Sum_probs=55.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhhHHHHHHhhhHhhhHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q psy6549 13 NQALVRTGESIVRSEQAALEAEAIGT---GVISELGVQREALVRARDRLVDTDLHVSRSRRMIQAIRRRVFYNKLFLIMI 89 (109)
Q Consensus 13 ~~~l~~t~~~L~~s~~~~~ete~iG~---~il~~L~~Qre~L~~~~~~~~~i~~~l~~a~~~l~~m~rr~~~~K~il~~i 89 (109)
.+++.+..+.+++.+.++.+..+--. +-+++|.+..|.|..... .--..|+++=+.|-.+-++-++++.++
T Consensus 32 ~d~l~~vq~evdeVk~IM~~NIdkvLeRGEkLd~L~~KTe~L~~~S~------~F~k~A~kl~rkmwwkn~K~~iii~~i 105 (119)
T 2kog_A 32 NRRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGAS------QFETSAAKLKRKYWWKNLKMMIILGVI 105 (119)
T ss_dssp CSHHHHSSHHHHHHHHHHHHHHHHHHCCCCSSCCCCSCCSCCCSSSH------HHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788888888898888888866321 112455555555544333 333557777888888888888888777
Q ss_pred HHHHHHHHHHHH
Q psy6549 90 IVIESMTLSVML 101 (109)
Q Consensus 90 i~~l~l~i~~vi 101 (109)
+++++++|++.+
T Consensus 106 v~iii~iIi~~~ 117 (119)
T 2kog_A 106 CAIILIIIIVYF 117 (119)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHhhhhe
Confidence 777766665544
No 23
>3ljc_A ATP-dependent protease LA; LON N-domain, allosteric enzyme, ATP-binding, DNA-binding, H nucleotide-binding, serine protease, stress respo; 2.60A {Escherichia coli}
Probab=83.72 E-value=7.4 Score=27.57 Aligned_cols=61 Identities=10% Similarity=0.080 Sum_probs=48.6
Q ss_pred CchHHHHHHHhhh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------hHHHHHHhhhHhhh
Q psy6549 1 MEKIHRETLRETN---QALVRTGESIVRSEQAALEAEAIGTGVISELGVQ------REALVRARDRLVDT 61 (109)
Q Consensus 1 ~~~~~R~~ll~~~---~~l~~t~~~L~~s~~~~~ete~iG~~il~~L~~Q------re~L~~~~~~~~~i 61 (109)
++.++++++|... ++++.-...|.+-..++.=..+|...+=+++..| ||||+-+++.+++-
T Consensus 182 l~~~eKQ~LLe~~d~~~Rl~~l~~lL~~e~e~~~l~~~I~~~v~~~~~k~Qrey~LrEQlk~IqkELGe~ 251 (252)
T 3ljc_A 182 LKLADKQSVLEMSDVNERLEYLMAMMESEIDLLQVEKRIRNRVKKQMEKSQREYYLNEQMKAIQKELGEM 251 (252)
T ss_dssp CCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred CCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 3678899999865 5777777888888888877888888888888866 67999998888753
No 24
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=82.80 E-value=2 Score=23.18 Aligned_cols=9 Identities=0% Similarity=0.124 Sum_probs=3.6
Q ss_pred HHHHHHHhc
Q psy6549 99 VMLYLKIFK 107 (109)
Q Consensus 99 ~viy~k~~~ 107 (109)
+.+|+.|.+
T Consensus 28 ~~~~~~~RR 36 (44)
T 2l2t_A 28 LTFAVYVRR 36 (44)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHhhh
Confidence 333444443
No 25
>1sfc_B Protein (syntaxin 1A), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1l4a_B
Probab=82.45 E-value=5.9 Score=23.66 Aligned_cols=60 Identities=13% Similarity=0.018 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHhhhHHHHHHHHHHHHHHH
Q psy6549 17 VRTGESIVRSEQAALEAEAIGTGVISELGVQREALVRARDRLVDTDLHVSRSRRMIQAIR 76 (109)
Q Consensus 17 ~~t~~~L~~s~~~~~ete~iG~~il~~L~~Qre~L~~~~~~~~~i~~~l~~a~~~l~~m~ 76 (109)
..-...+.+-.+.+.|..++=.+...-...|.|.+.++..++..+..++..|..-|..-.
T Consensus 17 ~eR~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~kA~ 76 (83)
T 1sfc_B 17 ETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAV 76 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455666677777777777777777789999999999999999999999998776543
No 26
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=80.40 E-value=1.4 Score=23.82 Aligned_cols=9 Identities=11% Similarity=-0.005 Sum_probs=3.6
Q ss_pred HHHHHHHhc
Q psy6549 99 VMLYLKIFK 107 (109)
Q Consensus 99 ~viy~k~~~ 107 (109)
+.+|+.+.+
T Consensus 29 ~~~~~~~RR 37 (44)
T 2ks1_B 29 LGIGLFMRR 37 (44)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHhhh
Confidence 333444443
No 27
>1sfc_A VAMP 2, protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1
Probab=80.20 E-value=8.2 Score=23.85 Aligned_cols=64 Identities=11% Similarity=0.135 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHhhhHHHHHHHHHHHHHHHHHHHhh
Q psy6549 19 TGESIVRSEQAALEAEAIGTGVISELGVQREALVRARDRLVDTDLHVSRSRRMIQAIRRRVFYN 82 (109)
Q Consensus 19 t~~~L~~s~~~~~ete~iG~~il~~L~~Qre~L~~~~~~~~~i~~~l~~a~~~l~~m~rr~~~~ 82 (109)
+.+.|...+.-++|+.++-.+-+..+-+..|.|....++.++....-..=.+.-+.+.|+++-.
T Consensus 28 ~~d~l~~vq~eldeVk~IM~~NI~kvLeRGEkLd~L~dkse~L~~~S~~F~k~A~kl~rkmwwk 91 (96)
T 1sfc_A 28 SNRRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKYWWK 91 (96)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578888999999999999999999999999999998888887776666555555666665443
No 28
>1n7s_A Vesicle-associated membrane protein 2; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1kil_A 3rk2_A 3rk3_A 3rl0_A 3fii_B 3g94_B
Probab=78.47 E-value=7 Score=22.05 Aligned_cols=59 Identities=12% Similarity=0.096 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHhhhHHHHHHHHHHHHHHHHH
Q psy6549 20 GESIVRSEQAALEAEAIGTGVISELGVQREALVRARDRLVDTDLHVSRSRRMIQAIRRR 78 (109)
Q Consensus 20 ~~~L~~s~~~~~ete~iG~~il~~L~~Qre~L~~~~~~~~~i~~~l~~a~~~l~~m~rr 78 (109)
.+.|...+.-++|+..+-..-...+-+..|.|....++.++....-..=.+.-+.+.|+
T Consensus 3 ~d~l~~v~~~l~ev~~iM~~NI~~vl~RGekLd~L~~ks~~L~~~s~~F~~~a~~l~r~ 61 (63)
T 1n7s_A 3 NRRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRK 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45677778888888888888888888899999988777777666544433333444333
No 29
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=77.93 E-value=4.2 Score=22.84 Aligned_cols=7 Identities=29% Similarity=0.700 Sum_probs=3.9
Q ss_pred HHHhccC
Q psy6549 103 LKIFKKR 109 (109)
Q Consensus 103 ~k~~~~~ 109 (109)
.-|||+|
T Consensus 33 ~GFFKR~ 39 (54)
T 2l8s_A 33 IGFFKRP 39 (54)
T ss_dssp HHHTTSC
T ss_pred cCcccCC
Confidence 3566654
No 30
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=77.60 E-value=4.2 Score=22.82 Aligned_cols=6 Identities=33% Similarity=0.728 Sum_probs=3.4
Q ss_pred HHhccC
Q psy6549 104 KIFKKR 109 (109)
Q Consensus 104 k~~~~~ 109 (109)
-|||+|
T Consensus 37 GFFkR~ 42 (54)
T 2knc_A 37 GFFKRN 42 (54)
T ss_dssp HHTTTT
T ss_pred CcccCC
Confidence 566654
No 31
>3b5n_A Synaptobrevin homolog 1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=77.55 E-value=7.4 Score=21.85 Aligned_cols=58 Identities=12% Similarity=0.135 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHhhhHHHHHHHHHHHHHHHHH
Q psy6549 21 ESIVRSEQAALEAEAIGTGVISELGVQREALVRARDRLVDTDLHVSRSRRMIQAIRRR 78 (109)
Q Consensus 21 ~~L~~s~~~~~ete~iG~~il~~L~~Qre~L~~~~~~~~~i~~~l~~a~~~l~~m~rr 78 (109)
+.|...+.-++|+..+-.+-+..+-+..|.|....++.++....-..=.+.-+.+.|+
T Consensus 2 d~l~~vq~~l~evk~iM~~NI~~vl~RgekLd~L~~ks~~L~~~s~~F~~~a~~l~r~ 59 (61)
T 3b5n_A 2 SRTAELQAEIDDTVGIMRDNINKVAERGERLTSIEDKADNLAVSAQGFKRGANRVRKA 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4567777888888888888888898999999988777776665544433444444443
No 32
>2nps_A VAMP-4, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Mus musculus}
Probab=74.94 E-value=10 Score=22.12 Aligned_cols=62 Identities=13% Similarity=0.150 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHhhhHHHHHHHHHHHHHHHHHHHh
Q psy6549 20 GESIVRSEQAALEAEAIGTGVISELGVQREALVRARDRLVDTDLHVSRSRRMIQAIRRRVFY 81 (109)
Q Consensus 20 ~~~L~~s~~~~~ete~iG~~il~~L~~Qre~L~~~~~~~~~i~~~l~~a~~~l~~m~rr~~~ 81 (109)
.+.|...+.-++|+..+-.+-+..+-+..|.|....++.++....-..=.+.-+.+.|+++-
T Consensus 7 ~d~l~~vq~el~ev~~iM~~NI~~vL~RgekLd~L~~ks~~L~~~s~~F~~~a~~l~r~~ww 68 (74)
T 2nps_A 7 NDKIKHVQNQVDEVIDVMQENITKVIERGERLDELQDKSESLSDNATAFSNRSKQLRRQMWW 68 (74)
T ss_dssp CSSSHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566777778888888888888999999999998888887766666555555566666543
No 33
>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A
Probab=72.89 E-value=27 Score=26.01 Aligned_cols=22 Identities=14% Similarity=0.244 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHhccC
Q psy6549 88 MIIVIESMTLSVMLYLKIFKKR 109 (109)
Q Consensus 88 ~ii~~l~l~i~~viy~k~~~~~ 109 (109)
.+++++.+++++++|+.|+|||
T Consensus 340 ~~~l~~m~~i~~~~~~~Fkrk~ 361 (363)
T 2iub_A 340 PVVLAVMGVIAVIMVVYFKKKK 361 (363)
T ss_dssp HHHHHHHHHHHHHHHTTTTSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHcc
Confidence 3344444556666666666664
No 34
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=72.62 E-value=6.9 Score=21.00 Aligned_cols=24 Identities=8% Similarity=0.182 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcc
Q psy6549 85 FLIMIIVIESMTLSVMLYLKIFKK 108 (109)
Q Consensus 85 il~~ii~~l~l~i~~viy~k~~~~ 108 (109)
|..+++.++++.++.+.++-|.|+
T Consensus 14 Ia~~vVGvll~vi~~l~~~~~~RR 37 (44)
T 2jwa_A 14 IISAVVGILLVVVLGVVFGILIKR 37 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHhheeh
Confidence 455666666677777788888765
No 35
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=71.88 E-value=6 Score=20.99 Aligned_cols=6 Identities=33% Similarity=0.728 Sum_probs=3.3
Q ss_pred HHhccC
Q psy6549 104 KIFKKR 109 (109)
Q Consensus 104 k~~~~~ 109 (109)
-|||+|
T Consensus 35 GFFkR~ 40 (42)
T 2k1a_A 35 GFFKRN 40 (42)
T ss_dssp TTTCCC
T ss_pred CcccCC
Confidence 466654
No 36
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=70.10 E-value=7.4 Score=20.83 Aligned_cols=9 Identities=0% Similarity=-0.208 Sum_probs=3.9
Q ss_pred HHHHHHHHH
Q psy6549 96 TLSVMLYLK 104 (109)
Q Consensus 96 ~i~~viy~k 104 (109)
+.+++++.+
T Consensus 29 ~~~~~~~RR 37 (44)
T 2ks1_B 29 LGIGLFMRR 37 (44)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHhhh
Confidence 344444443
No 37
>1nhl_A Synaptosomal-associated protein 23; snare, coiled-coil, protein transport; 2.30A {Homo sapiens} SCOP: h.1.15.1
Probab=68.76 E-value=10 Score=20.77 Aligned_cols=20 Identities=20% Similarity=0.159 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy6549 15 ALVRTGESIVRSEQAALEAE 34 (109)
Q Consensus 15 ~l~~t~~~L~~s~~~~~ete 34 (109)
.|.++.+.|+++.+.+.+.+
T Consensus 22 ~L~~QgEql~r~~~~ld~i~ 41 (54)
T 1nhl_A 22 MLDEQKEQLNRIEEGLDQIN 41 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHhhHHHHHhHHHHHH
Confidence 33444444444444444443
No 38
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=68.09 E-value=8.5 Score=20.62 Aligned_cols=8 Identities=0% Similarity=-0.288 Sum_probs=3.4
Q ss_pred HHHHHHHH
Q psy6549 96 TLSVMLYL 103 (109)
Q Consensus 96 ~i~~viy~ 103 (109)
+..++++.
T Consensus 28 ~~~~~~~R 35 (44)
T 2l2t_A 28 LTFAVYVR 35 (44)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhh
Confidence 34444444
No 39
>1l4a_A Synaptobrevin; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=68.04 E-value=7.4 Score=23.12 Aligned_cols=60 Identities=10% Similarity=0.085 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHhhhHHHHHHHHHHHHHHHHHH
Q psy6549 20 GESIVRSEQAALEAEAIGTGVISELGVQREALVRARDRLVDTDLHVSRSRRMIQAIRRRV 79 (109)
Q Consensus 20 ~~~L~~s~~~~~ete~iG~~il~~L~~Qre~L~~~~~~~~~i~~~l~~a~~~l~~m~rr~ 79 (109)
.+.|...+.-++|+..+-..-+..+-+..|.|....++.++....-..=.+.-+.+.|++
T Consensus 14 ~d~l~~vq~el~ev~~iM~~NI~~vLeRGekLd~L~~kt~~L~~~s~~F~k~A~~l~rk~ 73 (80)
T 1l4a_A 14 SKRLQQTQAQVEEVVDIMRVNVDKVLERDSKISELDDRADALQAGASQFEASAGKLKRKF 73 (80)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTSTTTTHHHHHHHHHC
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466778888888888888888899999999999988888876655443333334444443
No 40
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=66.32 E-value=1e+02 Score=30.18 Aligned_cols=73 Identities=11% Similarity=0.016 Sum_probs=51.4
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHhhhHHHHHHHHHHHHHHHHH
Q psy6549 6 RETLRETNQALVRTGESIVRSEQAALEAEAIGTGVISELGVQREALVRARDRLVDTDLHVSRSRRMIQAIRRR 78 (109)
Q Consensus 6 R~~ll~~~~~l~~t~~~L~~s~~~~~ete~iG~~il~~L~~Qre~L~~~~~~~~~i~~~l~~a~~~l~~m~rr 78 (109)
|++|....+.++.+.+.|...+..+.+.++-=...-.++..-...-......++.+..-+.+|.+++...+--
T Consensus 2013 r~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li~gL~~E 2085 (3245)
T 3vkg_A 2013 REEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIALLDNLNSE 2085 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Confidence 5667777777788888888887777777664444444444444445556667888889999999999887654
No 41
>1n7s_C SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1sfc_C 1urq_C 3hd7_C* 3hd9_C 3ipd_C 3rk2_C 3rk3_C 3rl0_C 1kil_C 1jth_A
Probab=65.35 E-value=17 Score=21.56 Aligned_cols=16 Identities=13% Similarity=0.050 Sum_probs=6.3
Q ss_pred hhHHHHHHHHHHHHHH
Q psy6549 12 TNQALVRTGESIVRSE 27 (109)
Q Consensus 12 ~~~~l~~t~~~L~~s~ 27 (109)
+++++.++-....+++
T Consensus 21 s~~s~~~~l~~a~Ete 36 (79)
T 1n7s_C 21 SLESTRRMLQLVEESK 36 (79)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3334444443333433
No 42
>1q90_R Cytochrome B6-F complex iron-sulfur subunit; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.12.1
Probab=65.00 E-value=13 Score=20.25 Aligned_cols=18 Identities=11% Similarity=0.045 Sum_probs=13.4
Q ss_pred HHHHHHHhhHHHHHHHHH
Q psy6549 74 AIRRRVFYNKLFLIMIIV 91 (109)
Q Consensus 74 ~m~rr~~~~K~il~~ii~ 91 (109)
+|.||.+-|+..+..+.+
T Consensus 8 dm~RRqfln~l~~G~~a~ 25 (49)
T 1q90_R 8 DMNKRNIMNLILAGGAGL 25 (49)
T ss_dssp CHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHH
Confidence 589999999887744433
No 43
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=63.10 E-value=11 Score=19.34 Aligned_cols=10 Identities=10% Similarity=0.082 Sum_probs=3.9
Q ss_pred HHHHHHHHhc
Q psy6549 98 SVMLYLKIFK 107 (109)
Q Consensus 98 ~~viy~k~~~ 107 (109)
..++|+.|.|
T Consensus 28 ~~l~~~~~rr 37 (38)
T 2k1k_A 28 LGILVFRSRR 37 (38)
T ss_dssp HHHHHHHHCC
T ss_pred HHHHHHHeec
Confidence 3334443433
No 44
>2l6w_A Beta-type platelet-derived growth factor receptor; transmembrane helix, receptor tyrosine kinase, heptad repeat membrane protein; NMR {Homo sapiens}
Probab=66.98 E-value=1.5 Score=23.04 Aligned_cols=12 Identities=25% Similarity=0.207 Sum_probs=6.3
Q ss_pred HHHHHHHHHhcc
Q psy6549 97 LSVMLYLKIFKK 108 (109)
Q Consensus 97 i~~viy~k~~~~ 108 (109)
..++++++|.+|
T Consensus 24 sLIiLi~~w~qK 35 (39)
T 2l6w_A 24 SLIILIMLWQKK 35 (39)
Confidence 334455666554
No 45
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=61.80 E-value=11 Score=22.45 Aligned_cols=10 Identities=30% Similarity=0.507 Sum_probs=4.0
Q ss_pred HHHHHHHHHH
Q psy6549 95 MTLSVMLYLK 104 (109)
Q Consensus 95 l~i~~viy~k 104 (109)
+.+++++.+|
T Consensus 24 iGllllliwk 33 (79)
T 2knc_B 24 IGLAALLIWK 33 (79)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333344444
No 46
>2lk9_A Bone marrow stromal antigen 2; membrane, micelle, antiviral protein-immune system complex; NMR {Homo sapiens}
Probab=61.52 E-value=11 Score=19.09 Aligned_cols=9 Identities=33% Similarity=0.460 Sum_probs=3.5
Q ss_pred HHHHHHHHH
Q psy6549 84 LFLIMIIVI 92 (109)
Q Consensus 84 ~il~~ii~~ 92 (109)
..++..+++
T Consensus 5 L~lg~Gvl~ 13 (35)
T 2lk9_A 5 LLLGIGILV 13 (35)
T ss_dssp CHHHHHHHH
T ss_pred eeecccHHH
Confidence 344433333
No 47
>2k9j_B Integrin beta-3; transmembrane complex, cell adhesion, cleavage on basic residues, disease mutation, glycoprotein, pyrrolidone carboxylic acid; NMR {Homo sapiens} PDB: 2rmz_A 2rn0_A 2l91_A
Probab=55.93 E-value=21 Score=18.81 Aligned_cols=14 Identities=29% Similarity=0.408 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHH
Q psy6549 92 IESMTLSVMLYLKI 105 (109)
Q Consensus 92 ~l~l~i~~viy~k~ 105 (109)
++++.+++++.+|+
T Consensus 20 ivliGl~lLliwk~ 33 (43)
T 2k9j_B 20 ILLIGLAALLIWKL 33 (43)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33344444444444
No 48
>3c98_B Syntaxin-1A; protein complex, alternative splicing, cytoplasm, membrane, phosphoprotein, protein transport, transport, coiled coil; 2.60A {Rattus norvegicus}
Probab=55.72 E-value=2.6 Score=29.40 Aligned_cols=61 Identities=13% Similarity=0.035 Sum_probs=47.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHhhhHHHHHHHHHHHH
Q psy6549 13 NQALVRTGESIVRSEQAALEAEAIGTGVISELGVQREALVRARDRLVDTDLHVSRSRRMIQ 73 (109)
Q Consensus 13 ~~~l~~t~~~L~~s~~~~~ete~iG~~il~~L~~Qre~L~~~~~~~~~i~~~l~~a~~~l~ 73 (109)
...+......+.+....+.+..++-.++......|.+.+..+..++.++..++..+..-+.
T Consensus 204 ~~~i~~~~~~i~~I~~~i~ei~~~~~~ia~~v~eQ~~~~~~I~~nv~~~~~~v~~~~~el~ 264 (279)
T 3c98_B 204 LSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTK 264 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHCSGGGCHHHHHHTCCCCCCCCC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677788888888888999999999999999999999999999988766655544443
No 49
>1m56_D Cytochrome C oxidase; membrane protein, oxidoreductase; HET: HEA PEH; 2.30A {Rhodobacter sphaeroides} SCOP: f.23.8.1 PDB: 1m57_D*
Probab=52.83 E-value=19 Score=19.77 Aligned_cols=18 Identities=17% Similarity=0.207 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy6549 84 LFLIMIIVIESMTLSVML 101 (109)
Q Consensus 84 ~il~~ii~~l~l~i~~vi 101 (109)
+..|+.+++.++++++.+
T Consensus 31 ~~k~gt~~~~~~ll~lai 48 (51)
T 1m56_D 31 MVTWAAVVIVAALIFLAL 48 (51)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 445555554444444333
No 50
>1urq_A M-tomosyn isoform; transport protein, tomosyn-snare complex, exocytosis, four helical bundle, coiled coil; 2.0A {Rattus norvegicus} SCOP: h.1.15.1
Probab=51.10 E-value=32 Score=19.52 Aligned_cols=50 Identities=12% Similarity=-0.037 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHhhhHHHHHHHHHH
Q psy6549 22 SIVRSEQAALEAEAIGTGVISELGVQREALVRARDRLVDTDLHVSRSRRM 71 (109)
Q Consensus 22 ~L~~s~~~~~ete~iG~~il~~L~~Qre~L~~~~~~~~~i~~~l~~a~~~ 71 (109)
.+...+.-+.|+.++-..-...+.+-.|.|....++.++..+....=.+.
T Consensus 5 ~i~~v~~qv~ev~~iM~~ni~kvlERGekL~~L~dkT~~L~~~A~~F~~~ 54 (63)
T 1urq_A 5 GIEGVKGAASGVVGELARARLALDERGQKLSDLEERTAAMMSSADSFSKH 54 (63)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777888888888888999999999999888888776665543333
No 51
>1fjk_A Cardiac phospholamban; helix, membrane protein; NMR {Sus scrofa} SCOP: j.37.1.1 PDB: 1fjp_A 2kyv_A 1zll_A 2hyn_A 1n7l_A 2kb7_P 1plp_A
Probab=49.97 E-value=29 Score=18.73 Aligned_cols=23 Identities=17% Similarity=0.241 Sum_probs=10.1
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHH
Q psy6549 76 RRRVFYNKLFLIMIIVIESMTLS 98 (109)
Q Consensus 76 ~rr~~~~K~il~~ii~~l~l~i~ 98 (109)
+|+-.++-++=+..|++.+++|+
T Consensus 24 arqnlqelfvnfclilicllli~ 46 (52)
T 1fjk_A 24 ARQNLQNLFINFCLILIFLLLIC 46 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555554544444433333333
No 52
>1qle_D Cytochrome AA3, ccytochrome C oxidase; oxidoreductase/immune system, complex (oxidoreductase/antibody), electron transport; HET: HEA PC1; 3.0A {Paracoccus denitrificans} SCOP: f.23.8.1
Probab=49.92 E-value=18 Score=19.17 Aligned_cols=15 Identities=7% Similarity=-0.181 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHH
Q psy6549 84 LFLIMIIVIESMTLS 98 (109)
Q Consensus 84 ~il~~ii~~l~l~i~ 98 (109)
+..|+.+++.+++++
T Consensus 23 ~~k~gt~~~~~~ll~ 37 (43)
T 1qle_D 23 GATWVSILSIAVLVF 37 (43)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 344555544444333
No 53
>1pi7_A VPU protein, U ORF protein; alpha helix, viral protein; NMR {Human immunodeficiency virus 1} SCOP: j.35.1.1 PDB: 1pi8_A 1pje_A 2gof_A 2goh_A 2jpx_A
Probab=49.85 E-value=25 Score=17.93 Aligned_cols=11 Identities=9% Similarity=-0.218 Sum_probs=5.1
Q ss_pred HHHHHHHHHhc
Q psy6549 97 LSVMLYLKIFK 107 (109)
Q Consensus 97 i~~viy~k~~~ 107 (109)
+.++-|.|+.|
T Consensus 24 iv~ieYrk~~k 34 (36)
T 1pi7_A 24 IVIIEGRGGKK 34 (36)
T ss_pred HHHHHHHHHHh
Confidence 33444555544
No 54
>1svf_B Protein (fusion glycoprotein); paramyxovirus, SV5, coiled-coil, viral protein; 1.40A {Simian virus 5} SCOP: h.3.2.1
Probab=49.28 E-value=16 Score=18.81 Aligned_cols=24 Identities=25% Similarity=0.338 Sum_probs=12.6
Q ss_pred HHHHhhhHhhhHHHHHHHHHHHHH
Q psy6549 51 LVRARDRLVDTDLHVSRSRRMIQA 74 (109)
Q Consensus 51 L~~~~~~~~~i~~~l~~a~~~l~~ 74 (109)
|..+...+.+....+.+|+..|..
T Consensus 14 L~~~n~sl~~A~~~l~~Sn~~L~~ 37 (38)
T 1svf_B 14 LAAVNKSLSDALQHLAQSDTYLSA 37 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHc
Confidence 444455555555555555555543
No 55
>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis}
Probab=48.06 E-value=52 Score=21.09 Aligned_cols=39 Identities=15% Similarity=0.311 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q psy6549 65 VSRSRRMIQAIRRRVFYNKLFLIMIIVIESMTLSVMLYL 103 (109)
Q Consensus 65 l~~a~~~l~~m~rr~~~~K~il~~ii~~l~l~i~~viy~ 103 (109)
+-..+++++.+.+......+...+++++++++.+.++|.
T Consensus 8 ~~~l~rl~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 46 (148)
T 3vou_A 8 ILTLKRMLKACLRAWKDKEFQVLFVLTFLTLTSGTIFYS 46 (148)
T ss_dssp HHHHHHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566666666654444444444444554445544444
No 56
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=46.33 E-value=83 Score=22.95 Aligned_cols=19 Identities=0% Similarity=0.032 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHhccC
Q psy6549 91 VIESMTLSVMLYLKIFKKR 109 (109)
Q Consensus 91 ~~l~l~i~~viy~k~~~~~ 109 (109)
+++++++++++|+.|+|||
T Consensus 319 l~~m~~~~~~~~~~fkrk~ 337 (339)
T 4ev6_A 319 MALMVVIIMIFVYIFRRSG 337 (339)
T ss_dssp HHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHcC
Confidence 3334455555666666654
No 57
>1gl2_C VTI1B, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1
Probab=46.32 E-value=39 Score=19.08 Aligned_cols=56 Identities=14% Similarity=0.147 Sum_probs=29.9
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHhhhHH
Q psy6549 8 TLRETNQALVRTGESIVRSEQAALEAEAIGTGVISELGVQREALVRARDRLVDTDL 63 (109)
Q Consensus 8 ~ll~~~~~l~~t~~~L~~s~~~~~ete~iG~~il~~L~~Qre~L~~~~~~~~~i~~ 63 (109)
+|-+++++++++..-+.+++.+..++-+-=..==+.|..=++.+..++..++....
T Consensus 3 rL~~t~~~l~~s~ri~~ETE~iG~~~l~~L~~QREql~~t~~~l~~~d~~l~~s~k 58 (65)
T 1gl2_C 3 HMNRATQSIERSHRIATETDQIGTEIIEELGEQRDQLERTKSRLVNTNENLSKSRK 58 (65)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHhHHHhHHhHHHHHHH
Confidence 34456666666666666666666665332222234445555556665555554443
No 58
>2rdd_B UPF0092 membrane protein YAJC; drug resistance, multidrug efflux, transporter, antiporter, novel transmembrane helix, ACRB, inner membrane; HET: AIC; 3.50A {Escherichia coli}
Probab=43.33 E-value=19 Score=18.17 Aligned_cols=10 Identities=20% Similarity=0.770 Sum_probs=4.7
Q ss_pred HHHHHHHHHh
Q psy6549 97 LSVMLYLKIF 106 (109)
Q Consensus 97 i~~viy~k~~ 106 (109)
+++++|+-+.
T Consensus 12 ~~~ifYFl~i 21 (37)
T 2rdd_B 12 FGLIFYFMIL 21 (37)
T ss_dssp HHHHHHHHTH
T ss_pred HHHHHHHHHh
Confidence 3445555443
No 59
>1gl2_A Endobrevin; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1
Probab=42.82 E-value=44 Score=18.76 Aligned_cols=47 Identities=13% Similarity=0.124 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHhhhHHH
Q psy6549 18 RTGESIVRSEQAALEAEAIGTGVISELGVQREALVRARDRLVDTDLH 64 (109)
Q Consensus 18 ~t~~~L~~s~~~~~ete~iG~~il~~L~~Qre~L~~~~~~~~~i~~~ 64 (109)
...+.|...+.-+.|+..+-..-+..+-...|.|....++.++....
T Consensus 6 ~~~d~l~~vq~~l~evk~iM~~NI~~vL~RgekLd~L~~ks~~L~~~ 52 (65)
T 1gl2_A 6 AGNDRVRNLQSEVEGVKNIMTQNVERILARGENLDHLRNKTEDLEAT 52 (65)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 34567778888888888888888888888889988887776665443
No 60
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
Probab=40.19 E-value=40 Score=19.65 Aligned_cols=21 Identities=0% Similarity=-0.129 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHH--HHHHhc
Q psy6549 87 IMIIVIESMTLSVML--YLKIFK 107 (109)
Q Consensus 87 ~~ii~~l~l~i~~vi--y~k~~~ 107 (109)
.+.++.+++.+++.+ +.|+.|
T Consensus 14 lGg~~~lll~~glcI~ccvkcrh 36 (70)
T 2klu_A 14 LGGVAGLLLFIGLGIFFSVRSRH 36 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HhHHHHHHHHHHHHHHHhhHHHH
Confidence 333333334444443 454544
No 61
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=40.13 E-value=65 Score=19.93 Aligned_cols=33 Identities=12% Similarity=0.094 Sum_probs=17.4
Q ss_pred HHHHHHhhhHhhhHHHHHHHHHHHHHHHHHHHh
Q psy6549 49 EALVRARDRLVDTDLHVSRSRRMIQAIRRRVFY 81 (109)
Q Consensus 49 e~L~~~~~~~~~i~~~l~~a~~~l~~m~rr~~~ 81 (109)
.....+..++.+-..++..|.+.=+.-.++.+.
T Consensus 56 ~nv~~a~~~v~~g~~eL~kA~~yqk~~rkk~~i 88 (109)
T 3hd7_B 56 YNVEHAVDYVERAVSDTKKAVKYQSKARRKKIM 88 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCccee
Confidence 344455555555556666665555554444433
No 62
>3arc_L Photosystem II reaction center protein L; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_L* 3a0b_L* 3a0h_L* 2axt_L* 3bz1_L* 3bz2_L* 3kzi_L* 3prq_L* 3prr_L*
Probab=37.96 E-value=42 Score=17.11 Aligned_cols=19 Identities=16% Similarity=0.363 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy6549 85 FLIMIIVIESMTLSVMLYL 103 (109)
Q Consensus 85 il~~ii~~l~l~i~~viy~ 103 (109)
+-||..+++++++.+--|+
T Consensus 17 Ly~GLLlifvlavlFssyf 35 (37)
T 3arc_L 17 LYLGLLLILVLALLFSSYF 35 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhc
Confidence 3466666666666665554
No 63
>1cd1_A CD1, MCD1D.1; immunology, MHC, TCR, glycoprotein, signal, immunoglobulin fold, T-cell; 2.67A {Mus musculus} SCOP: b.1.1.2 d.19.1.1
Probab=37.86 E-value=6.8 Score=28.70 Aligned_cols=13 Identities=8% Similarity=0.332 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHH
Q psy6549 87 IMIIVIESMTLSV 99 (109)
Q Consensus 87 ~~ii~~l~l~i~~ 99 (109)
.+++++|++++++
T Consensus 288 ~~vi~~l~ll~~~ 300 (315)
T 1cd1_A 288 FIVLIMLVVVGAV 300 (315)
T ss_dssp -------------
T ss_pred hhHHHHHHHHHHH
Confidence 3344434444433
No 64
>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A
Probab=37.14 E-value=73 Score=19.61 Aligned_cols=37 Identities=16% Similarity=0.318 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q psy6549 67 RSRRMIQAIRRRVFYNKLFLIMIIVIESMTLSVMLYL 103 (109)
Q Consensus 67 ~a~~~l~~m~rr~~~~K~il~~ii~~l~l~i~~viy~ 103 (109)
...++++.+.+....+.+...+++++++++.+.++|+
T Consensus 7 ~~~rl~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 43 (114)
T 2q67_A 7 TLKRMLRACLRAWKDKEFQVLFVLTILTLISGTIFYS 43 (114)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 4456666665544333333334444444444545554
No 65
>1u6h_B Talin; protein-protein complex, cell adhesion; 2.38A {Gallus gallus}
Probab=36.48 E-value=23 Score=17.47 Aligned_cols=25 Identities=12% Similarity=0.142 Sum_probs=16.6
Q ss_pred hHHHHHHHhhhHHHHHHHHHHHHHH
Q psy6549 3 KIHRETLRETNQALVRTGESIVRSE 27 (109)
Q Consensus 3 ~~~R~~ll~~~~~l~~t~~~L~~s~ 27 (109)
.+.|++|+.....+.+.+.++-++-
T Consensus 2 ~~~q~rLl~aak~vaeata~mVeaa 26 (31)
T 1u6h_B 2 LENSRKLLSAAKILADATAKMVEAA 26 (31)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567788888888877777766653
No 66
>2oez_A UPF0289 protein VP2528; immunoglobulin fold, alpha-structure, structural genomics, P protein structure initiative; HET: MSE; 1.97A {Vibrio parahaemolyticus} SCOP: e.68.1.1
Probab=35.23 E-value=88 Score=22.52 Aligned_cols=64 Identities=9% Similarity=-0.009 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHH------HHHHHHHHHhhHHHHHHh-------hhHhhhHHHHHHHHHHHHHHH---HHHHhhHHHHH
Q psy6549 24 VRSEQAALEAEAIG------TGVISELGVQREALVRAR-------DRLVDTDLHVSRSRRMIQAIR---RRVFYNKLFLI 87 (109)
Q Consensus 24 ~~s~~~~~ete~iG------~~il~~L~~Qre~L~~~~-------~~~~~i~~~l~~a~~~l~~m~---rr~~~~K~il~ 87 (109)
.-+-+.+.|.-++. .+++.+|.+|+.+|..-. +.++.+-+.++.+...|..+. .....|+|++.
T Consensus 42 ~~a~~~Lfelldv~~R~dlK~eLlKeLERq~~~L~~~~~~P~Vd~~~l~~~l~~l~~~~~~L~~~~r~Gq~Lrede~L~~ 121 (247)
T 2oez_A 42 QLFFRALFDMVEIFEQIQLKSELAKDLEKQRLSYRHWLNVEGVDQEALNSLLNEIDVVHSQLMGAERFGQALKEDRFLSS 121 (247)
T ss_dssp HHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTTCTTSCHHHHHHHHHHHHHHHHHHHHCCSTTHHHHHCHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHHHHHHHHhcCcccchhhHhHHHHH
Confidence 44445555555544 579999999999999854 667778888888887777754 34567777754
No 67
>2ww9_B Protein transport protein SSS1; ribonucleoprotein, transmembrane, phospho signal sequence, membrane, ribosome, transport; 8.60A {Saccharomyces cerevisiae} PDB: 2wwa_B
Probab=34.94 E-value=73 Score=19.03 Aligned_cols=45 Identities=9% Similarity=0.000 Sum_probs=23.6
Q ss_pred hHHHHHHHHHHHHHH---HHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy6549 61 TDLHVSRSRRMIQAI---RRRVFYNKLFLIMIIVIESMTLSVMLYLKI 105 (109)
Q Consensus 61 i~~~l~~a~~~l~~m---~rr~~~~K~il~~ii~~l~l~i~~viy~k~ 105 (109)
..+-+..+.++++.= .|..+..=.-..++-++++.+|++++++-+
T Consensus 25 ~~~f~kd~~rvlk~~~KPdr~Ef~~iak~t~iG~~imG~IGfiIkLI~ 72 (80)
T 2ww9_B 25 PVEFVREGTQFLAKCKKPDLKEYTKIVKAVGIGFIAVGIIGYAIKLIH 72 (80)
T ss_dssp HHHHHHHHHHHHHSCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444332 234555545555666666677777766543
No 68
>3vmt_A Monofunctional glycosyltransferase; transmembrane, bacterial cell WALL SYNT membrane; HET: LHI; 2.30A {Staphylococcus aureus} PDB: 3vmr_A* 3vms_A 3vmq_A*
Probab=32.54 E-value=20 Score=26.27 Aligned_cols=34 Identities=6% Similarity=0.122 Sum_probs=13.5
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy6549 72 IQAIRRRVFYNKLFLIMIIVIESMTLSVMLYLKI 105 (109)
Q Consensus 72 l~~m~rr~~~~K~il~~ii~~l~l~i~~viy~k~ 105 (109)
+....++....|++.++++++++++++++.|+.+
T Consensus 24 ~~~~~kk~~~~~~~~~~~~~~l~~~~~~~~~~~~ 57 (263)
T 3vmt_A 24 VGKPPKKKKSKRILLKILLTILIIIALFIGIMYF 57 (263)
T ss_dssp -----------CCTTHHHHHHHHHHHHHHHHHHH
T ss_pred cCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555567776666666555555544443
No 69
>3arc_X Photosystem II PSBX protein; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3prq_X* 3prr_X* 3kzi_X* 3a0b_X* 3a0h_X*
Probab=32.54 E-value=56 Score=16.93 Aligned_cols=18 Identities=11% Similarity=-0.005 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy6549 86 LIMIIVIESMTLSVMLYL 103 (109)
Q Consensus 86 l~~ii~~l~l~i~~viy~ 103 (109)
+++.+++.++++.++...
T Consensus 14 ~aG~vvvv~i~~ali~VS 31 (39)
T 3arc_X 14 LSGAVVLGLTFAVLIAIS 31 (39)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHheeEe
Confidence 444444444444444433
No 70
>3arc_T Photosystem II reaction center protein T; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_T* 2axt_T* 3bz1_T* 3bz2_T* 3kzi_T* 3prq_T* 3prr_T* 3a0b_T* 3a0h_T*
Probab=32.48 E-value=50 Score=16.38 Aligned_cols=13 Identities=8% Similarity=0.521 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHhc
Q psy6549 95 MTLSVMLYLKIFK 107 (109)
Q Consensus 95 l~i~~viy~k~~~ 107 (109)
.+++++++--+||
T Consensus 12 ~tlgiiFFAI~FR 24 (32)
T 3arc_T 12 CIIALFFFAIFFR 24 (32)
T ss_dssp HHHHHHHHHHHTS
T ss_pred HHHHHHHHhhhhc
Confidence 3444444444443
No 71
>1rh5_B Preprotein translocase SECE subunit; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} SCOP: f.23.28.1 PDB: 1rhz_B 2yxq_B 2yxr_B 3dkn_B
Probab=31.69 E-value=81 Score=18.50 Aligned_cols=47 Identities=4% Similarity=0.039 Sum_probs=23.3
Q ss_pred hhhHHHHHHHHHHHHHH---HHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy6549 59 VDTDLHVSRSRRMIQAI---RRRVFYNKLFLIMIIVIESMTLSVMLYLKI 105 (109)
Q Consensus 59 ~~i~~~l~~a~~~l~~m---~rr~~~~K~il~~ii~~l~l~i~~viy~k~ 105 (109)
+...+-+..+.++++.= .|+.+..=.-..++-++++.+|++++++-+
T Consensus 10 e~~~~f~kd~~rvlk~~~KPdr~EF~~iak~~~iG~~imG~IGfiIkli~ 59 (74)
T 1rh5_B 10 EQLKEFIEECRRVWLVLKKPTKDEYLAVAKVTALGISLLGIIGYIIHVPA 59 (74)
T ss_dssp --CCHHHHHHHHHHHSEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555554432 234444444455555566667777766543
No 72
>1ifl_A Inovirus; helical virus; 5.00A {Enterobacteria phage ike} SCOP: h.1.4.1
Probab=31.69 E-value=54 Score=18.10 Aligned_cols=21 Identities=14% Similarity=0.116 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHH-HHHHHh
Q psy6549 86 LIMIIVIESMTLSVM-LYLKIF 106 (109)
Q Consensus 86 l~~ii~~l~l~i~~v-iy~k~~ 106 (109)
.|.+++.++++.+.+ +|-||.
T Consensus 28 ~W~vvv~vv~a~~gIklFKKf~ 49 (53)
T 1ifl_A 28 TWPVVTTVVVAGLVIRLFKKFS 49 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhheeeechhhhhhhhhcc
Confidence 456665554444433 555554
No 73
>3j1r_A Archaeal adhesion filament core; helical polymer, flagellar filament, cell adhesion, structur protein; 7.50A {Ignicoccus hospitalis}
Probab=31.66 E-value=46 Score=15.67 Aligned_cols=7 Identities=43% Similarity=0.776 Sum_probs=3.3
Q ss_pred HHHHHHH
Q psy6549 99 VMLYLKI 105 (109)
Q Consensus 99 ~viy~k~ 105 (109)
+++|.+|
T Consensus 19 VllylW~ 25 (26)
T 3j1r_A 19 VLLYTWV 25 (26)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 3455544
No 74
>1pfi_A Major coat protein of PF1 virus; complex(viral coat protein/DNA), helical virus; HET: DC; 3.00A {Pseudomonas phage PF1} SCOP: h.1.4.1 PDB: 1ifn_A 1ifm_A* 1pjf_A 1ql1_A 1ql2_A 1zn5_A 2ifm_A 2ifn_A 2klv_A 2ksj_A 2xkm_A 3ifm_A 4ifm_A
Probab=31.40 E-value=62 Score=17.09 Aligned_cols=20 Identities=15% Similarity=0.145 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHhcc
Q psy6549 89 IIVIESMTLSVMLYLKIFKK 108 (109)
Q Consensus 89 ii~~l~l~i~~viy~k~~~~ 108 (109)
|+.+|+++.+.=+.|.+.||
T Consensus 26 IVGaLvil~VAGLiysm~RK 45 (46)
T 1pfi_A 26 IVGALVILAVAGLIYSMLRK 45 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 33333333333344444443
No 75
>2gsm_B Cytochrome C oxidase subunit 2; transmembrane protein complex, oxidoreductase; HET: DMU HEA TRD; 2.00A {Rhodobacter sphaeroides} SCOP: b.6.1.2 f.17.2.1 PDB: 3dtu_B* 3fye_B* 3fyi_B* 3omi_B* 3om3_B* 3oma_B* 3omn_B* 1m56_B* 1m57_B*
Probab=30.97 E-value=1.1e+02 Score=22.06 Aligned_cols=21 Identities=24% Similarity=0.467 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy6549 84 LFLIMIIVIESMTLSVMLYLK 104 (109)
Q Consensus 84 ~il~~ii~~l~l~i~~viy~k 104 (109)
.+++++++++++..++++|.-
T Consensus 35 ~~~~i~~~I~v~V~~ll~~~~ 55 (262)
T 2gsm_B 35 FILVIIAAITIFVTLLILYAV 55 (262)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444444433444444444
No 76
>1dn1_B Syntaxin 1A, syntaxin binding protein 1; protein-protein complex, multi-subunit; 2.60A {Rattus norvegicus} PDB: 3c98_B
Probab=29.80 E-value=16 Score=26.26 Aligned_cols=54 Identities=15% Similarity=0.059 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHhhhHHHHHHHHHHHHH
Q psy6549 21 ESIVRSEQAALEAEAIGTGVISELGVQREALVRARDRLVDTDLHVSRSRRMIQA 74 (109)
Q Consensus 21 ~~L~~s~~~~~ete~iG~~il~~L~~Qre~L~~~~~~~~~i~~~l~~a~~~l~~ 74 (109)
..+.+-.+.+.|..++=.+...-...|.|.|.++..++..+..++..|..-|..
T Consensus 200 ~~i~~ie~~i~el~~if~dla~lV~~Qg~~id~Ie~nv~~a~~~v~~~~~~l~k 253 (267)
T 1dn1_B 200 SEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKK 253 (267)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHCSGGGCHHHHHHTCCCCCCCCC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555556655666667799999999999999988888777766653
No 77
>3l9k_W Dynein intermediate chain, cytosolic; LC7, light chain 7, KM23, RO hydrolase, alternative splicing, lysosome, membrane; 3.00A {Drosophila melanogaster}
Probab=28.84 E-value=65 Score=16.53 Aligned_cols=27 Identities=19% Similarity=0.287 Sum_probs=20.6
Q ss_pred CchHHHHHHHhhhHHH---HHHHHHHHHHH
Q psy6549 1 MEKIHRETLRETNQAL---VRTGESIVRSE 27 (109)
Q Consensus 1 ~~~~~R~~ll~~~~~l---~~t~~~L~~s~ 27 (109)
+|++++++.+.+.+-+ ++++.-+++|.
T Consensus 1 LseEEk~~I~~S~~F~~F~~rsskviERAL 30 (38)
T 3l9k_W 1 LSEEQKQMIILSENFQRFVVRAGRVIERAL 30 (38)
T ss_dssp CCHHHHHHHHTSHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence 6889999999987654 57777777664
No 78
>2nps_C Vesicle transport through interaction with T- snares homolog 1A; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus}
Probab=28.64 E-value=93 Score=18.24 Aligned_cols=54 Identities=20% Similarity=0.190 Sum_probs=23.1
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhHHHHHHhhhHhhh
Q psy6549 7 ETLRETNQALVRTGESIVRSEQAALEAE-AIGTGVISELGVQREALVRARDRLVDT 61 (109)
Q Consensus 7 ~~ll~~~~~l~~t~~~L~~s~~~~~ete-~iG~~il~~L~~Qre~L~~~~~~~~~i 61 (109)
++|-+++++++++..-+.+++.+..++- +++.+ =+.|..=++.+..++..++..
T Consensus 12 ~~L~rt~~~L~~s~r~~~ETE~iG~~il~~L~~Q-RE~l~~~~~~l~~~d~~l~~s 66 (81)
T 2nps_C 12 ERLERSSRRLEAGYQIAVETEQIGQEMLENLSHD-RERIQRARERLRETDANLGKS 66 (81)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHhHHhHHHHH
Confidence 3444445555555555555555544432 22221 233333344444444444443
No 79
>2w1k_A Putative sortase; pilus, pneumococcus, pathogenicity, transferase; HET: MES; 2.14A {Streptococcus pneumoniae}
Probab=28.59 E-value=12 Score=27.02 Aligned_cols=23 Identities=9% Similarity=0.128 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q psy6549 84 LFLIMIIVIESMTLSVMLYLKIF 106 (109)
Q Consensus 84 ~il~~ii~~l~l~i~~viy~k~~ 106 (109)
|.+++++++.+++|++++|..|.
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~ 247 (252)
T 2w1k_A 225 WLYRGLVVLAFLGILFVLWKLAR 247 (252)
T ss_dssp -----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444455555554443
No 80
>2c5k_T Syntaxin TLG1, T-snare affecting A late golgi compartment protein 1; protein transport/complex, snare, VFT complex, protein transport, phosphorylation; 2.05A {Saccharomyces cerevisiae} PDB: 2c5j_A 2c5i_T
Probab=28.34 E-value=65 Score=19.62 Aligned_cols=13 Identities=23% Similarity=0.128 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHHH
Q psy6549 14 QALVRTGESIVRS 26 (109)
Q Consensus 14 ~~l~~t~~~L~~s 26 (109)
+.+..+-+-|.+|
T Consensus 46 ~el~e~l~DL~~S 58 (95)
T 2c5k_T 46 KDVEETIVDLDRS 58 (95)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 81
>1v54_D Cytochrome C oxidase subunit IV isoform 1; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.1.1 PDB: 1oco_D* 1occ_D* 1ocz_D* 1ocr_D* 1v55_D* 2dyr_D* 2dys_D* 2eij_D* 2eik_D* 2eil_D* 2eim_D* 2ein_D* 2occ_D* 2ybb_O* 2zxw_D* 3abk_D* 3abl_D* 3abm_D* 3ag1_D* 3ag2_D* ...
Probab=27.69 E-value=79 Score=21.03 Aligned_cols=24 Identities=13% Similarity=0.206 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q psy6549 83 KLFLIMIIVIESMTLSVMLYLKIF 106 (109)
Q Consensus 83 K~il~~ii~~l~l~i~~viy~k~~ 106 (109)
|-++.++++++.+.+.++++.+.+
T Consensus 79 K~v~g~v~~~i~~s~~~f~~~r~~ 102 (147)
T 1v54_D 79 KTVVGAAMFFIGFTALLLIWEKHY 102 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446666666666666666555543
No 82
>3bz1_X Photosystem II PSBX protein; electron transport photosystem, membrane complex, transmembrane alpha-helix; HET: CLA PHO HEM PL9 BCR DGD LHG SQD LMG LMT; 2.90A {Thermosynechococcus elongatus} PDB: 1s5l_X* 3bz2_X*
Probab=26.93 E-value=73 Score=17.38 Aligned_cols=16 Identities=13% Similarity=0.052 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHH
Q psy6549 86 LIMIIVIESMTLSVML 101 (109)
Q Consensus 86 l~~ii~~l~l~i~~vi 101 (109)
+++.+++.++++.+++
T Consensus 24 vaG~vVvv~i~~aLi~ 39 (50)
T 3bz1_X 24 LSGAVVLGLTFAVLIA 39 (50)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhee
Confidence 4444444434333333
No 83
>3hb3_B Cytochrome C oxidase subunit 2; electron transfer, proton transfer, proton pumping, membrane protein, cell inner membrane, cell membrane, copper; HET: HEA LDA LMT; 2.25A {Paracoccus denitrificans} PDB: 1ar1_B* 3ehb_B* 1qle_B*
Probab=25.55 E-value=1.5e+02 Score=21.87 Aligned_cols=21 Identities=14% Similarity=0.238 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy6549 84 LFLIMIIVIESMTLSVMLYLK 104 (109)
Q Consensus 84 ~il~~ii~~l~l~i~~viy~k 104 (109)
.++++++++++++.++++|.-
T Consensus 66 ~~~~i~~~I~v~V~~l~~~~~ 86 (298)
T 3hb3_B 66 FVLYIITAVTIFVCLLLLICI 86 (298)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444443
No 84
>2j5l_A Apical membrane antigen 1; malaria vaccine candidate, apical membrane antigen 1, hypothetical protein, immunoglobulin domain; 2.9A {Plasmodium falciparum} SCOP: g.61.1.1 PDB: 1hn6_A
Probab=25.47 E-value=15 Score=29.78 Aligned_cols=26 Identities=8% Similarity=0.204 Sum_probs=0.0
Q ss_pred hHHHHH--HHHHHHHHHHHHHHHHHHhcc
Q psy6549 82 NKLFLI--MIIVIESMTLSVMLYLKIFKK 108 (109)
Q Consensus 82 ~K~il~--~ii~~l~l~i~~viy~k~~~~ 108 (109)
.|++++ ++.+.++++.++.+|+ ++|+
T Consensus 510 ~~~~~ii~~~~~~~~~~a~~~~~~-~~k~ 537 (581)
T 2j5l_A 510 YDNMKIIIASSAAVAVLATILMVY-LYKR 537 (581)
T ss_dssp -----------------------------
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHH-HHhc
Confidence 344444 3333333334444555 3444
No 85
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=24.04 E-value=1e+02 Score=18.07 Aligned_cols=14 Identities=7% Similarity=0.138 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHH
Q psy6549 92 IESMTLSVMLYLKI 105 (109)
Q Consensus 92 ~l~l~i~~viy~k~ 105 (109)
++++.|++++.-|+
T Consensus 27 Lfi~GI~iilS~Kc 40 (72)
T 2jo1_A 27 LFILGILIVLSRRC 40 (72)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCcc
Confidence 33344555554444
No 86
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=23.40 E-value=82 Score=19.23 Aligned_cols=23 Identities=4% Similarity=0.342 Sum_probs=17.2
Q ss_pred hhhHhhhHHHHHHHHHHHHHHHH
Q psy6549 55 RDRLVDTDLHVSRSRRMIQAIRR 77 (109)
Q Consensus 55 ~~~~~~i~~~l~~a~~~l~~m~r 77 (109)
+..+.+++..+++|..+|..|.-
T Consensus 37 k~~i~~ie~~l~EA~ell~qMel 59 (102)
T 1vcs_A 37 KQMVANVEKQLEEARELLEQMDL 59 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34577788888888888888753
No 87
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=23.39 E-value=82 Score=19.25 Aligned_cols=23 Identities=9% Similarity=0.176 Sum_probs=17.1
Q ss_pred hhhHhhhHHHHHHHHHHHHHHHH
Q psy6549 55 RDRLVDTDLHVSRSRRMIQAIRR 77 (109)
Q Consensus 55 ~~~~~~i~~~l~~a~~~l~~m~r 77 (109)
+..+.+++..+++|..+|..|.-
T Consensus 48 k~~i~~ie~~ldEA~eLl~qMel 70 (102)
T 2qyw_A 48 KKLVRDFDEKQQEANETLAEMEE 70 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34577788888888888888753
No 88
>1oed_B Acetylcholine receptor protein, beta chain; ION channel/receptor, ION channel, tubular crystal, transmembrane; 4.0A {Torpedo marmorata} SCOP: f.36.1.1 PDB: 2k58_B
Probab=23.37 E-value=94 Score=22.16 Aligned_cols=23 Identities=26% Similarity=0.431 Sum_probs=16.2
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHH
Q psy6549 79 VFYNKLFLIMIIVIESMTLSVML 101 (109)
Q Consensus 79 ~~~~K~il~~ii~~l~l~i~~vi 101 (109)
+.-||+++|..+++.++.-++++
T Consensus 217 mVlDRlfL~iF~i~~i~gT~~I~ 239 (250)
T 1oed_B 217 MVADRLFLYVFFVICSIGTFSIF 239 (250)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 57789999877776655555444
No 89
>2wwb_B SEC61gamma, protein transport protein SEC61 subunit gamma; ribosome, protein EXIT tunnel, cotranslational protein translocation, protein conducting channel; 6.48A {Canis lupus familiaris}
Probab=22.63 E-value=91 Score=17.96 Aligned_cols=46 Identities=15% Similarity=0.093 Sum_probs=24.1
Q ss_pred hhHHHHHHHHHHHHHH---HHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy6549 60 DTDLHVSRSRRMIQAI---RRRVFYNKLFLIMIIVIESMTLSVMLYLKI 105 (109)
Q Consensus 60 ~i~~~l~~a~~~l~~m---~rr~~~~K~il~~ii~~l~l~i~~viy~k~ 105 (109)
...+-+..+.++++.= .|+.+..=.-..++-++++.+|++++++-+
T Consensus 10 ~~~~f~k~~~r~lk~~~KPdr~Ef~~iak~~~iG~~i~G~IGf~IklI~ 58 (68)
T 2wwb_B 10 PSRQFVKDSIRLVKRCTKPDRKEFQKIAMATAIGFAIMGFIGFFVKLIH 58 (68)
T ss_dssp THHHHHHHHHHHHHHCCCCCTHHHHHHHHHSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555432 233444444445555666677777766544
No 90
>2y69_D Cytochrome C oxidase subunit 4 isoform 1; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=22.32 E-value=1.1e+02 Score=20.79 Aligned_cols=24 Identities=13% Similarity=0.206 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q psy6549 83 KLFLIMIIVIESMTLSVMLYLKIF 106 (109)
Q Consensus 83 K~il~~ii~~l~l~i~~viy~k~~ 106 (109)
|-++.++++++.+.+.++++.+.+
T Consensus 101 K~V~ggv~~~i~~s~~~f~~~r~~ 124 (169)
T 2y69_D 101 KTVVGAAMFFIGFTALLLIWEKHY 124 (169)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446666666665666666655543
No 91
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=21.99 E-value=5.9e+02 Score=25.23 Aligned_cols=20 Identities=15% Similarity=0.042 Sum_probs=9.5
Q ss_pred HHHHHHhhhHHHHHHHHHHH
Q psy6549 5 HRETLRETNQALVRTGESIV 24 (109)
Q Consensus 5 ~R~~ll~~~~~l~~t~~~L~ 24 (109)
++.+|-.|-++|++|...++
T Consensus 1918 ~~~rl~~GL~KL~et~~~V~ 1937 (3245)
T 3vkg_A 1918 EQLHLNIGLKKLRDTEAQVK 1937 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555444333
No 92
>2ifo_A Inovirus; helical virus; NMR {Filamentous phage} SCOP: h.1.4.1
Probab=21.15 E-value=83 Score=16.82 Aligned_cols=13 Identities=8% Similarity=0.123 Sum_probs=7.0
Q ss_pred HHHHHHHHHHhcc
Q psy6549 96 TLSVMLYLKIFKK 108 (109)
Q Consensus 96 ~i~~viy~k~~~~ 108 (109)
++..+..|||.|+
T Consensus 32 V~v~i~v~k~IRr 44 (46)
T 2ifo_A 32 VMVGIKVYKWVRR 44 (46)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 3444555666654
No 93
>3htu_B Vacuolar protein-sorting-associated protein 20; ESCRT-II, ESCRT-III, VPS20, VPS25, MVB, cytoplasm, nucleus, polymorphism, protein transport; 2.00A {Homo sapiens}
Probab=21.11 E-value=98 Score=15.88 Aligned_cols=21 Identities=29% Similarity=0.423 Sum_probs=16.2
Q ss_pred HHHHHHHhhHHHHHHhhhHhh
Q psy6549 40 VISELGVQREALVRARDRLVD 60 (109)
Q Consensus 40 il~~L~~Qre~L~~~~~~~~~ 60 (109)
..-+|..||+.|..-..++..
T Consensus 10 AIL~LK~QRDkL~qyqkri~~ 30 (39)
T 3htu_B 10 AILQLKQQRDKLRQYQKRIAQ 30 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345789999999888877754
No 94
>3s8f_B Cytochrome C oxidase subunit 2; complex IV, respiratory chain, lipid cubic phase, monoolein, peroxide, electron transport, proton pump; HET: HEM HAS OLC; 1.80A {Thermus thermophilus} PDB: 1ehk_B* 2qpd_B* 3qjq_B* 3qjr_B* 3qju_B* 3qjv_B* 1xme_B* 3s8g_B* 4esl_B* 4ev3_B* 4f05_B* 4fa7_B* 4faa_B* 3qjs_B* 3bvd_B* 2qpe_B* 3qjt_B* 3s3b_B* 3s33_B* 3s39_B* ...
Probab=20.60 E-value=1e+02 Score=20.72 Aligned_cols=24 Identities=13% Similarity=0.182 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q psy6549 83 KLFLIMIIVIESMTLSVMLYLKIF 106 (109)
Q Consensus 83 K~il~~ii~~l~l~i~~viy~k~~ 106 (109)
|.-+++.++++++.++++.|.-|.
T Consensus 16 ~~w~~~~~~~~~~f~~~~~~~~~~ 39 (168)
T 3s8f_B 16 KGWLAFSLAMLFVFIALIAYTLAT 39 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhH
Confidence 444444445555566666665443
No 95
>3zx6_A HAMP, methyl-accepting chemotaxis protein I; signaling, HAMP domain, TSR receptor, fusion; 2.65A {Archaeoglobus fulgidus}
Probab=20.52 E-value=2.5e+02 Score=20.38 Aligned_cols=62 Identities=11% Similarity=0.119 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHhhhHHHHHHHHHHHHHH
Q psy6549 14 QALVRTGESIVRSEQAALEAEAIGTGVISELGVQREALVRARDRLVDTDLHVSRSRRMIQAI 75 (109)
Q Consensus 14 ~~l~~t~~~L~~s~~~~~ete~iG~~il~~L~~Qre~L~~~~~~~~~i~~~l~~a~~~l~~m 75 (109)
...+.+.+.+......+.+..+.-.++.....+|.+....+...+.++..........+..+
T Consensus 220 ~~~~~~~~~~~~i~~~~~~i~~~~~~i~~~~~~~~~~~~~i~~~i~~i~~~~~~~~~~~~~~ 281 (341)
T 3zx6_A 220 TLVESAGETMAEIVSAVTRVTDIMGEIASASDEQSRGIDQVGLAVAEMDRVTQQNAALVEES 281 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555555555556666666666666666666666655555544444433
No 96
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=20.45 E-value=61 Score=18.78 Aligned_cols=10 Identities=20% Similarity=0.139 Sum_probs=4.1
Q ss_pred HHHHHHHHHH
Q psy6549 95 MTLSVMLYLK 104 (109)
Q Consensus 95 l~i~~viy~k 104 (109)
+.|++++.-|
T Consensus 31 ~GI~iilS~k 40 (67)
T 2jp3_A 31 AGIALALSGK 40 (67)
T ss_dssp HHHHHHHTTH
T ss_pred HHHHHHHcCc
Confidence 3444444333
No 97
>2xhe_B Syntaxin1; exocytosis, exocytosis complex, snare, neuro fusion, SM PROT choanoflagellates; 2.80A {Monosiga brevicollis}
Probab=20.18 E-value=18 Score=26.02 Aligned_cols=55 Identities=16% Similarity=0.146 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHhhhHHHHHHHHHHHHHH
Q psy6549 21 ESIVRSEQAALEAEAIGTGVISELGVQREALVRARDRLVDTDLHVSRSRRMIQAI 75 (109)
Q Consensus 21 ~~L~~s~~~~~ete~iG~~il~~L~~Qre~L~~~~~~~~~i~~~l~~a~~~l~~m 75 (109)
..+.+-.+.+.|..++=.+...-...|.|.|.++..++..+..++..|..-|..-
T Consensus 217 ~eI~~Ie~~i~el~~if~dla~lV~~Qg~~id~Ie~nv~~~~~~v~~~~~~l~kA 271 (279)
T 2xhe_B 217 KDIQQLERSLLELHEMFTDMSTLVASQGEMIDRIEFSVEQSHNYVKKATEQVVQA 271 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTTTSCSSTTCHHHHHHTCCCCC----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555566666666666555667899999999999999999999888776543
Done!