Query psy6549
Match_columns 109
No_of_seqs 102 out of 477
Neff 7.2
Searched_HMMs 13730
Date Fri Aug 16 20:50:02 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6549.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/6549hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2iuba2 f.17.3.1 (A:286-349) M 74.6 0.73 5.3E-05 25.0 1.8 16 94-109 49-64 (64)
2 d1m56d_ f.23.8.1 (D:) Bacteria 62.8 5.4 0.00039 19.9 3.4 15 84-98 22-36 (42)
3 d3dtub2 f.17.2.1 (B:30-129) Ba 58.0 6.9 0.0005 22.5 4.0 21 84-104 31-51 (100)
4 d1qled_ f.23.8.1 (D:) Bacteria 57.3 5.6 0.00041 20.0 2.9 14 84-97 23-36 (43)
5 d3ehbb2 f.17.2.1 (B:1-107) Bac 54.6 17 0.0012 21.1 5.4 25 82-106 35-59 (107)
6 d2axtl1 f.23.31.1 (L:1-37) Pho 47.6 13 0.00093 17.7 3.3 19 85-103 17-35 (37)
7 d1j2jb_ a.7.8.1 (B:) ADP-ribos 42.7 11 0.00079 18.6 2.5 16 63-78 21-36 (41)
8 d1ppjd2 f.23.11.1 (D:196-241) 42.5 18 0.0013 18.1 4.0 10 95-104 19-28 (46)
9 d3cx5d2 f.23.11.1 (D:261-307) 41.1 20 0.0015 18.1 4.0 14 93-106 17-30 (47)
10 d1rh5b_ f.23.28.1 (B:) Preprot 39.5 24 0.0017 18.5 4.8 29 77-105 20-48 (56)
11 d2asra_ a.24.2.1 (A:) Aspartat 36.8 25 0.0018 21.5 4.3 26 42-67 7-32 (142)
12 d1q90r_ f.23.12.1 (R:) ISP sub 36.0 22 0.0016 17.2 4.2 19 74-93 6-24 (39)
13 d1fftb2 f.17.2.1 (B:27-117) Cy 32.9 1.9 0.00014 24.9 -1.6 14 92-105 28-41 (91)
14 d1v54d_ f.23.1.1 (D:) Mitochon 29.6 33 0.0024 21.2 4.0 23 83-105 76-98 (144)
15 d2liga_ a.24.2.1 (A:) Aspartat 29.4 38 0.0028 20.9 4.3 28 40-67 18-45 (157)
16 d2f66c1 a.2.17.3 (C:142-206) V 25.4 34 0.0025 18.2 2.9 47 6-52 10-62 (65)
17 d1oedc_ f.36.1.1 (C:) Acetylch 22.9 48 0.0035 21.0 4.0 14 81-94 229-242 (260)
18 d2axti1 f.23.37.1 (I:1-35) Pho 22.5 32 0.0023 16.1 2.2 13 81-93 3-15 (35)
19 d1oedb_ f.36.1.1 (B:) Acetylch 22.0 50 0.0036 20.9 4.0 16 79-94 217-232 (250)
20 d1vcsa1 a.47.2.1 (A:8-96) Vesi 21.7 45 0.0033 18.6 3.2 22 55-76 30-51 (89)
21 d1u19a_ f.13.1.2 (A:) Rhodopsi 20.6 56 0.0041 20.9 4.1 21 88-108 46-66 (348)
22 d2e74g1 f.23.26.1 (G:9-35) Pet 20.5 38 0.0028 14.7 3.6 21 87-107 3-23 (27)
No 1
>d2iuba2 f.17.3.1 (A:286-349) Magnesium transport protein CorA {Thermotoga maritima [TaxId: 2336]}
Probab=74.64 E-value=0.73 Score=24.97 Aligned_cols=16 Identities=19% Similarity=0.274 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHhccC
Q psy6549 94 SMTLSVMLYLKIFKKR 109 (109)
Q Consensus 94 ~l~i~~viy~k~~~~~ 109 (109)
.+++++++|+.|.|||
T Consensus 49 ~~~~~~~~~~~f~rkk 64 (64)
T d2iuba2 49 MGVIAVIMVVYFKKKK 64 (64)
T ss_dssp HHHHHHHHHTTTTSCC
T ss_pred HHHHHHHHHHHHhccC
Confidence 3455556666666765
No 2
>d1m56d_ f.23.8.1 (D:) Bacterial aa3 type cytochrome c oxidase subunit IV {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=62.80 E-value=5.4 Score=19.91 Aligned_cols=15 Identities=13% Similarity=0.135 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHH
Q psy6549 84 LFLIMIIVIESMTLS 98 (109)
Q Consensus 84 ~il~~ii~~l~l~i~ 98 (109)
+..|+.|++++++|+
T Consensus 22 ~~t~~~i~~i~~lif 36 (42)
T d1m56d_ 22 MVTWAAVVIVAALIF 36 (42)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 444544444433333
No 3
>d3dtub2 f.17.2.1 (B:30-129) Bacterial aa3 type cytochrome c oxidase subunit II {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=57.96 E-value=6.9 Score=22.54 Aligned_cols=21 Identities=24% Similarity=0.467 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy6549 84 LFLIMIIVIESMTLSVMLYLK 104 (109)
Q Consensus 84 ~il~~ii~~l~l~i~~viy~k 104 (109)
.+++.+++++++..++++|.-
T Consensus 31 ~v~~i~~~I~~~V~~~l~~~~ 51 (100)
T d3dtub2 31 FILVIIAAITIFVTLLILYAV 51 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 444444444444444444433
No 4
>d1qled_ f.23.8.1 (D:) Bacterial aa3 type cytochrome c oxidase subunit IV {Paracoccus denitrificans [TaxId: 266]}
Probab=57.31 E-value=5.6 Score=19.96 Aligned_cols=14 Identities=7% Similarity=-0.128 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHH
Q psy6549 84 LFLIMIIVIESMTL 97 (109)
Q Consensus 84 ~il~~ii~~l~l~i 97 (109)
+..|+.|++++++|
T Consensus 23 ~~t~~~i~~i~~li 36 (43)
T d1qled_ 23 GATWVSILSIAVLV 36 (43)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 44444444443333
No 5
>d3ehbb2 f.17.2.1 (B:1-107) Bacterial aa3 type cytochrome c oxidase subunit II {Paracoccus denitrificans [TaxId: 266]}
Probab=54.60 E-value=17 Score=21.08 Aligned_cols=25 Identities=12% Similarity=0.236 Sum_probs=13.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHh
Q psy6549 82 NKLFLIMIIVIESMTLSVMLYLKIF 106 (109)
Q Consensus 82 ~K~il~~ii~~l~l~i~~viy~k~~ 106 (109)
+.++++.+++++++..++++|.-++
T Consensus 35 h~~v~~i~~~I~~~V~~~~~~~~~~ 59 (107)
T d3ehbb2 35 DHFVLYIITAVTIFVCLLLLICIVR 59 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3455666555555555555555444
No 6
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=47.59 E-value=13 Score=17.72 Aligned_cols=19 Identities=16% Similarity=0.363 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy6549 85 FLIMIIVIESMTLSVMLYL 103 (109)
Q Consensus 85 il~~ii~~l~l~i~~viy~ 103 (109)
+-|+..+++++++.+-.|+
T Consensus 17 Ly~GlLlifvl~vLFssYf 35 (37)
T d2axtl1 17 LYLGLLLILVLALLFSSYF 35 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 4466666666666666554
No 7
>d1j2jb_ a.7.8.1 (B:) ADP-ribosylation factor binding protein Gga1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=42.66 E-value=11 Score=18.58 Aligned_cols=16 Identities=6% Similarity=0.281 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHH
Q psy6549 63 LHVSRSRRMIQAIRRR 78 (109)
Q Consensus 63 ~~l~~a~~~l~~m~rr 78 (109)
.++..|+++++.|.+.
T Consensus 21 eDLqaANrLIK~mVke 36 (41)
T d1j2jb_ 21 EDLRAANKLIKEMVQE 36 (41)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5789999999999875
No 8
>d1ppjd2 f.23.11.1 (D:196-241) Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor {Cow (Bos taurus) [TaxId: 9913]}
Probab=42.50 E-value=18 Score=18.08 Aligned_cols=10 Identities=20% Similarity=0.438 Sum_probs=4.3
Q ss_pred HHHHHHHHHH
Q psy6549 95 MTLSVMLYLK 104 (109)
Q Consensus 95 l~i~~viy~k 104 (109)
++.++..|+|
T Consensus 19 ~l~~l~yy~K 28 (46)
T d1ppjd2 19 LLLPLVYAMK 28 (46)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3344444443
No 9
>d3cx5d2 f.23.11.1 (D:261-307) Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=41.08 E-value=20 Score=18.09 Aligned_cols=14 Identities=21% Similarity=0.282 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHh
Q psy6549 93 ESMTLSVMLYLKIF 106 (109)
Q Consensus 93 l~l~i~~viy~k~~ 106 (109)
+.+++++.+|+|-+
T Consensus 17 ~s~l~~~~~y~KR~ 30 (47)
T d3cx5d2 17 LSSLYLLSIWVKKF 30 (47)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 33445556666643
No 10
>d1rh5b_ f.23.28.1 (B:) Preprotein translocase SecE subunit {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=39.55 E-value=24 Score=18.47 Aligned_cols=29 Identities=0% Similarity=-0.046 Sum_probs=18.0
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy6549 77 RRVFYNKLFLIMIIVIESMTLSVMLYLKI 105 (109)
Q Consensus 77 rr~~~~K~il~~ii~~l~l~i~~viy~k~ 105 (109)
|+.+..-...+++-++++.+|++++|.-+
T Consensus 20 ~~Ef~~ia~v~~iG~~i~G~IGf~I~li~ 48 (56)
T d1rh5b_ 20 KDEYLAVAKVTALGISLLGIIGYIIHVPA 48 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555556666666677777777544
No 11
>d2asra_ a.24.2.1 (A:) Aspartate receptor, ligand-binding domain {Escherichia coli [TaxId: 562]}
Probab=36.77 E-value=25 Score=21.47 Aligned_cols=26 Identities=27% Similarity=0.422 Sum_probs=10.9
Q ss_pred HHHHHhhHHHHHHhhhHhhhHHHHHH
Q psy6549 42 SELGVQREALVRARDRLVDTDLHVSR 67 (109)
Q Consensus 42 ~~L~~Qre~L~~~~~~~~~i~~~l~~ 67 (109)
..+.+|+..|..+-..+-.+..+|.|
T Consensus 7 ~~~~qQq~~L~~sw~~LlqaR~tLnR 32 (142)
T d2asra_ 7 NQLREQQGELTSTWDLMLQTRINLSR 32 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444333333
No 12
>d1q90r_ f.23.12.1 (R:) ISP subunit from the cytochrome b6f complex, transmembrane anchor {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=36.05 E-value=22 Score=17.20 Aligned_cols=19 Identities=11% Similarity=0.079 Sum_probs=12.3
Q ss_pred HHHHHHHhhHHHHHHHHHHH
Q psy6549 74 AIRRRVFYNKLFLIMIIVIE 93 (109)
Q Consensus 74 ~m~rr~~~~K~il~~ii~~l 93 (109)
+|.||.+-|=+. .+.+.+-
T Consensus 6 DMgrR~~MNLll-~G~~~~~ 24 (39)
T d1q90r_ 6 DMNKRNIMNLIL-AGGAGLP 24 (39)
T ss_dssp CHHHHHHHHHHH-HHHHHHH
T ss_pred chhHHHHHHHHH-Hhccchh
Confidence 588999999444 4444444
No 13
>d1fftb2 f.17.2.1 (B:27-117) Cytochrome O ubiquinol oxidase, subunit II {Escherichia coli [TaxId: 562]}
Probab=32.92 E-value=1.9 Score=24.86 Aligned_cols=14 Identities=0% Similarity=-0.074 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHHH
Q psy6549 92 IESMTLSVMLYLKI 105 (109)
Q Consensus 92 ~l~l~i~~viy~k~ 105 (109)
++++..++++|.-|
T Consensus 28 v~v~V~~~~~~~~~ 41 (91)
T d1fftb2 28 VVIPAILMAVGFAW 41 (91)
T ss_dssp TTTHHHHHHHTTTT
T ss_pred HHHHHHHHHHhhhe
Confidence 33333444444333
No 14
>d1v54d_ f.23.1.1 (D:) Mitochondrial cytochrome c oxidase subunit IV {Cow (Bos taurus) [TaxId: 9913]}
Probab=29.58 E-value=33 Score=21.21 Aligned_cols=23 Identities=13% Similarity=0.141 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy6549 83 KLFLIMIIVIESMTLSVMLYLKI 105 (109)
Q Consensus 83 K~il~~ii~~l~l~i~~viy~k~ 105 (109)
|.++.++++.+.+.++++++.+.
T Consensus 76 K~v~g~~~~~i~~s~~i~~~~r~ 98 (144)
T d1v54d_ 76 KTVVGAAMFFIGFTALLLIWEKH 98 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666655555555555554443
No 15
>d2liga_ a.24.2.1 (A:) Aspartate receptor, ligand-binding domain {Salmonella typhimurium [TaxId: 90371]}
Probab=29.42 E-value=38 Score=20.95 Aligned_cols=28 Identities=29% Similarity=0.446 Sum_probs=12.5
Q ss_pred HHHHHHHhhHHHHHHhhhHhhhHHHHHH
Q psy6549 40 VISELGVQREALVRARDRLVDTDLHVSR 67 (109)
Q Consensus 40 il~~L~~Qre~L~~~~~~~~~i~~~l~~ 67 (109)
+...+.+|+..|..+-..+-....+|.|
T Consensus 18 ~~~~~~qq~~~L~~sw~~LlqAR~tLNR 45 (157)
T d2liga_ 18 ISNELRQQQSELTSTWDLMLQTRINLSR 45 (157)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444554444444444444444443
No 16
>d2f66c1 a.2.17.3 (C:142-206) Vacuolar protein sorting-associated protein 37, VPS37 (SRN2) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=25.45 E-value=34 Score=18.23 Aligned_cols=47 Identities=13% Similarity=0.286 Sum_probs=24.3
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHhhHHHH
Q psy6549 6 RETLRETNQALVRTGESIVRSEQAALEAEAIGT------GVISELGVQREALV 52 (109)
Q Consensus 6 R~~ll~~~~~l~~t~~~L~~s~~~~~ete~iG~------~il~~L~~Qre~L~ 52 (109)
+.+|-++...++..+..+.+..+...++.++-. ++-++-|-|||+|.
T Consensus 10 k~kL~~~~~~ld~~s~~l~~~~r~~~~s~elD~Fi~qYl~~RTeYH~rREKLa 62 (65)
T d2f66c1 10 KKKLEQNTKKLDEESSQLETTTRSIDSADDLDQFIKNYLDIRTQYHLRREKLA 62 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 445555666666655555444333333333332 33356667777763
No 17
>d1oedc_ f.36.1.1 (C:) Acetylcholine receptor protein, delta chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Probab=22.87 E-value=48 Score=21.05 Aligned_cols=14 Identities=14% Similarity=0.320 Sum_probs=8.4
Q ss_pred hhHHHHHHHHHHHH
Q psy6549 81 YNKLFLIMIIVIES 94 (109)
Q Consensus 81 ~~K~il~~ii~~l~ 94 (109)
-||+++++.+++.+
T Consensus 229 iDRlfl~lF~i~~v 242 (260)
T d1oedc_ 229 IDRLSMFIITPVMV 242 (260)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 67777765554433
No 18
>d2axti1 f.23.37.1 (I:1-35) Photosystem II reaction center protein I, PsbI {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=22.49 E-value=32 Score=16.08 Aligned_cols=13 Identities=8% Similarity=0.151 Sum_probs=7.8
Q ss_pred hhHHHHHHHHHHH
Q psy6549 81 YNKLFLIMIIVIE 93 (109)
Q Consensus 81 ~~K~il~~ii~~l 93 (109)
+=|+..|.++++.
T Consensus 3 tLKi~Vy~vV~fF 15 (35)
T d2axti1 3 TLKITVYIVVTFF 15 (35)
T ss_dssp HHHHHHHHHHHHH
T ss_pred eEEEehhhHHHHH
Confidence 4466677666554
No 19
>d1oedb_ f.36.1.1 (B:) Acetylcholine receptor protein, beta chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Probab=22.02 E-value=50 Score=20.95 Aligned_cols=16 Identities=38% Similarity=0.602 Sum_probs=10.2
Q ss_pred HHhhHHHHHHHHHHHH
Q psy6549 79 VFYNKLFLIMIIVIES 94 (109)
Q Consensus 79 ~~~~K~il~~ii~~l~ 94 (109)
...||+++++.+++.+
T Consensus 217 ~VlDRlfl~lF~l~~v 232 (250)
T d1oedb_ 217 MVADRLFLYVFFVICS 232 (250)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4578888876554443
No 20
>d1vcsa1 a.47.2.1 (A:8-96) Vesicle transport v-SNARE protein Vti1-like 2 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=21.71 E-value=45 Score=18.56 Aligned_cols=22 Identities=5% Similarity=0.391 Sum_probs=17.2
Q ss_pred hhhHhhhHHHHHHHHHHHHHHH
Q psy6549 55 RDRLVDTDLHVSRSRRMIQAIR 76 (109)
Q Consensus 55 ~~~~~~i~~~l~~a~~~l~~m~ 76 (109)
+..+.+++..+++|..+|..|.
T Consensus 30 k~~l~~ie~~leEA~ell~qMe 51 (89)
T d1vcsa1 30 KQMVANVEKQLEEARELLEQMD 51 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHH
Confidence 3557778888888888888885
No 21
>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]}
Probab=20.56 E-value=56 Score=20.93 Aligned_cols=21 Identities=19% Similarity=0.331 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHhcc
Q psy6549 88 MIIVIESMTLSVMLYLKIFKK 108 (109)
Q Consensus 88 ~ii~~l~l~i~~viy~k~~~~ 108 (109)
+++++-+++++++++.-+.+|
T Consensus 46 ii~v~gi~gN~lvi~vi~~~k 66 (348)
T d1u19a_ 46 LLIMLGFPINFLTLYVTVQHK 66 (348)
T ss_dssp HHHHHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHeehhhhccC
Confidence 333444456666666655544
No 22
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=20.48 E-value=38 Score=14.69 Aligned_cols=21 Identities=10% Similarity=0.039 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhc
Q psy6549 87 IMIIVIESMTLSVMLYLKIFK 107 (109)
Q Consensus 87 ~~ii~~l~l~i~~viy~k~~~ 107 (109)
.+.|++.+..+++.-|-.++|
T Consensus 3 lgli~~tl~glf~aayqqykr 23 (27)
T d2e74g1 3 LGLVFATLGGLFYAAYQQYKR 23 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHTTS
T ss_pred eeehHHHHHHHHHHHHHHhcC
Confidence 455555555556566655554
Done!