RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy6549
         (109 letters)



>d1rzua_ c.87.1.8 (A:) Glycogen synthase 1, GlgA {Agrobacterium
           tumefaciens [TaxId: 358]}
          Length = 477

 Score = 24.6 bits (52), Expect = 3.6
 Identities = 11/58 (18%), Positives = 16/58 (27%), Gaps = 1/58 (1%)

Query: 23  IVRSEQAALEAEAIGTGVISELGVQREALVRARDRLVDTDLHVSRSRRMIQAIRRRVF 80
            V     A  A    TGV        + L +A  R V          +M +   +   
Sbjct: 403 TVIDANHAALASKAATGVQFSPV-TLDGLKQAIRRTVRYYHDPKLWTQMQKLGMKSDV 459


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.326    0.137    0.354 

Gapped
Lambda     K      H
   0.267   0.0600    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 368,463
Number of extensions: 15044
Number of successful extensions: 52
Number of sequences better than 10.0: 1
Number of HSP's gapped: 52
Number of HSP's successfully gapped: 14
Length of query: 109
Length of database: 2,407,596
Length adjustment: 68
Effective length of query: 41
Effective length of database: 1,473,956
Effective search space: 60432196
Effective search space used: 60432196
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 47 (22.2 bits)