BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6552
(254 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5U3V9|SNF8_DANRE Vacuolar-sorting protein SNF8 OS=Danio rerio GN=snf8 PE=2 SV=2
Length = 258
Score = 287 bits (735), Expect = 5e-77, Method: Compositional matrix adjust.
Identities = 135/248 (54%), Positives = 187/248 (75%), Gaps = 6/248 (2%)
Query: 2 RRRAGVGAIQKQKLEQEKYKDKGTSIQENQLEQLSQHLNTFRDKLESFASEYKNEIKKDA 61
RR G GAI K+KL + KYK++G+ + E+Q+ Q+S+ L+TF+ LE FAS++K EI+K +
Sbjct: 3 RRGVGAGAIAKKKLAEAKYKERGSVLAEDQIAQMSKQLDTFKTHLEEFASKHKQEIRKSS 62
Query: 62 QFRRHFQEMCASIGVDPLASRKGFWS-LLGMGDFYYELSVQIVEVCLATNYKNGGLILLD 120
QFR FQEMCA+IGVDPLAS KGFWS +LG+GDFYYEL VQI+EVCLA ++NGGLI LD
Sbjct: 63 QFRVQFQEMCATIGVDPLASGKGFWSEMLGVGDFYYELGVQIIEVCLALKHRNGGLITLD 122
Query: 121 ELRTRLVKSRGKSLQHQDITNEDLLAAAKKLKIFGNGFSIIPIGQGQYLVQSIPGELSLD 180
EL R++K RGK QD++ +DL+ A KKLK GNGF +IP+G G YLVQS+P EL++D
Sbjct: 123 ELHHRVLKGRGKFA--QDVSQDDLVRAIKKLKAMGNGFGMIPVG-GTYLVQSVPAELNMD 179
Query: 181 HSLVLQQVASKNEAHISVSVLNNELNWSTERAQHALDFMVQEGYAWIDTQSPQEHLYWFP 240
H++VLQ ++ + +++VS + L W ERA H LD +++EG AW+D+Q+ E YW P
Sbjct: 180 HTVVLQ--LAEKKGYVTVSEIRESLKWEKERACHVLDHLLKEGLAWLDSQAAGEPQYWLP 237
Query: 241 SLFTECMN 248
+LF+E ++
Sbjct: 238 ALFSELLS 245
>sp|Q9CZ28|SNF8_MOUSE Vacuolar-sorting protein SNF8 OS=Mus musculus GN=Snf8 PE=2 SV=1
Length = 258
Score = 283 bits (724), Expect = 8e-76, Method: Compositional matrix adjust.
Identities = 135/250 (54%), Positives = 187/250 (74%), Gaps = 6/250 (2%)
Query: 2 RRRAGVGAIQKQKLEQEKYKDKGTSIQENQLEQLSQHLNTFRDKLESFASEYKNEIKKDA 61
RR G GAI K+KL + KYK++GT + E+QL Q+S+ L+ F+ LE FAS++K EI+K+
Sbjct: 3 RRGVGAGAIAKKKLAEAKYKERGTVLAEDQLAQMSKQLDMFKTNLEEFASKHKQEIRKNP 62
Query: 62 QFRRHFQEMCASIGVDPLASRKGFWS-LLGMGDFYYELSVQIVEVCLATNYKNGGLILLD 120
+FR FQ+MCA+IGVDPLAS KGFWS +LG+GDFYYEL VQI+EVCLA ++NGGLI L+
Sbjct: 63 EFRVQFQDMCATIGVDPLASGKGFWSEMLGVGDFYYELGVQIIEVCLALKHRNGGLITLE 122
Query: 121 ELRTRLVKSRGKSLQHQDITNEDLLAAAKKLKIFGNGFSIIPIGQGQYLVQSIPGELSLD 180
EL +++K RGK QD++ +DL+ A KKLK G GF IIP+G G YL+QS+P EL++D
Sbjct: 123 ELHQQVLKGRGKF--AQDVSQDDLIRAIKKLKALGTGFGIIPVG-GTYLIQSVPAELNMD 179
Query: 181 HSLVLQQVASKNEAHISVSVLNNELNWSTERAQHALDFMVQEGYAWIDTQSPQEHLYWFP 240
H++VL Q+A KN +++VS + L W TERA+ L+ +++EG AW+D Q+P E YW P
Sbjct: 180 HTVVL-QLAEKN-GYVTVSEIKTSLKWETERARQVLEHLLKEGLAWLDLQAPGEAHYWLP 237
Query: 241 SLFTECMNAE 250
+LFT+ + E
Sbjct: 238 ALFTDLYSQE 247
>sp|Q96H20|SNF8_HUMAN Vacuolar-sorting protein SNF8 OS=Homo sapiens GN=SNF8 PE=1 SV=1
Length = 258
Score = 282 bits (722), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 135/250 (54%), Positives = 187/250 (74%), Gaps = 6/250 (2%)
Query: 2 RRRAGVGAIQKQKLEQEKYKDKGTSIQENQLEQLSQHLNTFRDKLESFASEYKNEIKKDA 61
RR G GAI K+KL + KYK++GT + E+QL Q+S+ L+ F+ LE FAS++K EI+K+
Sbjct: 3 RRGVGAGAIAKKKLAEAKYKERGTVLAEDQLAQMSKQLDMFKTNLEEFASKHKQEIRKNP 62
Query: 62 QFRRHFQEMCASIGVDPLASRKGFWS-LLGMGDFYYELSVQIVEVCLATNYKNGGLILLD 120
+FR FQ+MCA+IGVDPLAS KGFWS +LG+GDFYYEL VQI+EVCLA ++NGGLI L+
Sbjct: 63 EFRVQFQDMCATIGVDPLASGKGFWSEMLGVGDFYYELGVQIIEVCLALKHRNGGLITLE 122
Query: 121 ELRTRLVKSRGKSLQHQDITNEDLLAAAKKLKIFGNGFSIIPIGQGQYLVQSIPGELSLD 180
EL +++K RGK QD++ +DL+ A KKLK G GF IIP+G G YL+QS+P EL++D
Sbjct: 123 ELHQQVLKGRGKF--AQDVSQDDLIRAIKKLKALGTGFGIIPVG-GTYLIQSVPAELNMD 179
Query: 181 HSLVLQQVASKNEAHISVSVLNNELNWSTERAQHALDFMVQEGYAWIDTQSPQEHLYWFP 240
H++VL Q+A KN +++VS + L W TERA+ L+ +++EG AW+D Q+P E YW P
Sbjct: 180 HTVVL-QLAEKN-GYVTVSEIKASLKWETERARQVLEHLLKEGLAWLDLQAPGEAHYWLP 237
Query: 241 SLFTECMNAE 250
+LFT+ + E
Sbjct: 238 ALFTDLYSQE 247
>sp|Q5RK19|SNF8_RAT Vacuolar-sorting protein SNF8 OS=Rattus norvegicus GN=Snf8 PE=1
SV=1
Length = 258
Score = 282 bits (722), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 135/250 (54%), Positives = 187/250 (74%), Gaps = 6/250 (2%)
Query: 2 RRRAGVGAIQKQKLEQEKYKDKGTSIQENQLEQLSQHLNTFRDKLESFASEYKNEIKKDA 61
RR G GAI K+KL + KYK++GT + E+QL Q+S+ L+ F+ LE FAS++K EI+K+
Sbjct: 3 RRGVGAGAIAKKKLAEAKYKERGTVLAEDQLAQMSKQLDMFKTNLEEFASKHKQEIRKNP 62
Query: 62 QFRRHFQEMCASIGVDPLASRKGFWS-LLGMGDFYYELSVQIVEVCLATNYKNGGLILLD 120
+FR FQ+MCA+IGVDPLAS KGFWS +LG+GDFYYEL VQI+EVCLA ++NGGLI L+
Sbjct: 63 EFRVQFQDMCATIGVDPLASGKGFWSEMLGVGDFYYELGVQIIEVCLALKHRNGGLITLE 122
Query: 121 ELRTRLVKSRGKSLQHQDITNEDLLAAAKKLKIFGNGFSIIPIGQGQYLVQSIPGELSLD 180
EL +++K RGK QD++ +DL+ A KKLK G GF IIP+G G YL+QS+P EL++D
Sbjct: 123 ELHQQVLKGRGKF--AQDVSQDDLIRAIKKLKALGTGFGIIPVG-GTYLIQSVPAELNMD 179
Query: 181 HSLVLQQVASKNEAHISVSVLNNELNWSTERAQHALDFMVQEGYAWIDTQSPQEHLYWFP 240
H++VL Q+A KN +++VS + L W TERA+ L+ +++EG AW+D Q+P E YW P
Sbjct: 180 HTVVL-QLAEKN-GYVTVSEIKASLKWETERARQVLEHLLKEGLAWLDLQAPGEAHYWLP 237
Query: 241 SLFTECMNAE 250
+LFT+ + E
Sbjct: 238 ALFTDLYSQE 247
>sp|Q5RJU0|SNF8_XENTR Vacuolar-sorting protein SNF8 OS=Xenopus tropicalis GN=snf8 PE=2
SV=1
Length = 257
Score = 281 bits (720), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 134/244 (54%), Positives = 183/244 (75%), Gaps = 6/244 (2%)
Query: 2 RRRAGVGAIQKQKLEQEKYKDKGTSIQENQLEQLSQHLNTFRDKLESFASEYKNEIKKDA 61
RR G GAI K+KL + KYK++GT + E+QL Q+S+ L F+ LE FAS++K EI+K+
Sbjct: 3 RRGVGAGAIAKKKLAEAKYKERGTVLAEDQLLQMSKQLEMFKTNLEEFASKHKQEIRKNP 62
Query: 62 QFRRHFQEMCASIGVDPLASRKGFWS-LLGMGDFYYELSVQIVEVCLATNYKNGGLILLD 120
QFR FQ+MCA+IGVDPLAS KGFWS +LG+GDFYYEL VQI+EVCLA + NGGLI L
Sbjct: 63 QFRVQFQDMCATIGVDPLASGKGFWSEMLGVGDFYYELGVQIIEVCLALKHHNGGLITLA 122
Query: 121 ELRTRLVKSRGKSLQHQDITNEDLLAAAKKLKIFGNGFSIIPIGQGQYLVQSIPGELSLD 180
EL ++K RGK QD++ +D++ A KKLK+ GNGF IIP+G G YLVQS+P EL++D
Sbjct: 123 ELHQHVLKGRGKLA--QDVSQDDIIRAIKKLKVLGNGFGIIPVG-GSYLVQSVPAELNMD 179
Query: 181 HSLVLQQVASKNEAHISVSVLNNELNWSTERAQHALDFMVQEGYAWIDTQSPQEHLYWFP 240
H++VLQ ++ + ++V+ + + LNW TERA+H L+ +++EG AWID+Q+ E YW P
Sbjct: 180 HTVVLQ--LAEKKGFVTVNEIKSSLNWETERAKHVLEHLLKEGLAWIDSQAQGEAQYWLP 237
Query: 241 SLFT 244
+LFT
Sbjct: 238 ALFT 241
>sp|Q5M759|VP221_ARATH Vacuolar protein sorting-associated protein 22 homolog 1
OS=Arabidopsis thaliana GN=VP22-1 PE=2 SV=2
Length = 250
Score = 207 bits (528), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 106/244 (43%), Positives = 160/244 (65%), Gaps = 7/244 (2%)
Query: 1 MRRRAGVGAIQKQKLEQEKYKDKGTSIQENQLEQLSQHLNTFRDKLESFASEYKNEIKKD 60
MRRR G+G +QK +++Y+ G ++ + + + + + L+TFR +LE FA ++KN+I+K+
Sbjct: 1 MRRRPGIGGLQKAAAARDQYRLLGENVAKLRTDMMKEQLSTFRSQLEEFARKHKNDIRKN 60
Query: 61 AQFRRHFQEMCASIGVDPLASRKGFWS-LLGMGDFYYELSVQIVEVCLATNYKNGGLILL 119
FR F EMCA+IGVDPLAS KGFW+ LLG+GDFYYEL VQI+EVC+ T NGGLI L
Sbjct: 61 PAFRAQFHEMCANIGVDPLASNKGFWAELLGIGDFYYELGVQIIEVCMLTRSHNGGLISL 120
Query: 120 DELRTRLVKSRGKSLQHQDITNEDLLAAAKKLKIFGNGFSIIPIGQGQYLVQSIPGELSL 179
EL L + R K + +T +D L A KLK+ G+GF +I IG+ + LV+S+P EL+
Sbjct: 121 QELCNHLRQRRKKD--REAVTEDDCLRAISKLKVLGSGFEVITIGK-KKLVRSVPTELNK 177
Query: 180 DHSLVLQQVASKNEAHISVSVLNNELNWSTERAQHALDFMVQEGYAWIDT-QSPQEHLYW 238
DH+ +L+ ++ + + V + L+W++ R AL+ +++EG A ID + YW
Sbjct: 178 DHNQILE--LAQGQGFVIVEEVQRRLSWTSGRVIDALETLLEEGLAMIDNGHKDGKCRYW 235
Query: 239 FPSL 242
FP +
Sbjct: 236 FPCV 239
>sp|Q54RC4|SNF8_DICDI Vacuolar-sorting protein SNF8 OS=Dictyostelium discoideum GN=snf8
PE=3 SV=1
Length = 246
Score = 206 bits (523), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 108/245 (44%), Positives = 164/245 (66%), Gaps = 5/245 (2%)
Query: 1 MRRRAGVGAIQKQKLEQEKYKDKGTSIQENQLEQLSQHLNTFRDKLESFASEYKNEIKKD 60
MRR G+ A QKQ Q++ ++ + + ++ + L F++ LE FA+++K +I K+
Sbjct: 1 MRRGIGIQAAQKQTQTQKQLQNVSEQLNTENINKIKEQLLVFKENLEIFATKHKKDIIKN 60
Query: 61 AQFRRHFQEMCASIGVDPLASRKGFWS-LLGMGDFYYELSVQIVEVCLATNYKNGGLILL 119
+FR++FQ+MC IGVDPLAS KGFW +LG+GDFYY L VQI+E+CL NGGL+ +
Sbjct: 61 PEFRKYFQDMCNMIGVDPLASNKGFWCQVLGVGDFYYTLGVQIIEICLKYRSSNGGLMEM 120
Query: 120 DELRTRLVKSRGKSLQHQDITNEDLLAAAKKLKIFGNGFSIIPIGQGQYLVQSIPGELSL 179
D L L K RGK+ Q+I+ +D+ + KLK+ GNGF+II + G+ LVQS+P EL+
Sbjct: 121 DTLAEHLRKLRGKN--SQEISCDDIECSISKLKVLGNGFNIIKVSGGKKLVQSVPCELNK 178
Query: 180 DHSLVLQQVASKNEAHISVSVLNNELNWSTERAQHALDFMVQEGYAWIDTQSPQEHLYWF 239
DH+ ++ +A N A I+ S++ ++L WS ER + ++F++QE WID QS E +YWF
Sbjct: 179 DHTDII-ILAQDNNASITQSLVISKLKWSEERINNVINFLLQESMIWIDEQS-NETIYWF 236
Query: 240 PSLFT 244
PSL++
Sbjct: 237 PSLWS 241
>sp|O94663|SNF8_SCHPO Vacuolar-sorting protein dot2 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=dot2 PE=3 SV=1
Length = 252
Score = 147 bits (370), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 78/243 (32%), Positives = 144/243 (59%), Gaps = 8/243 (3%)
Query: 1 MRRRAGVGAIQKQKLEQEKYKDKGTSIQENQLEQLSQHLNTFRDKLESFASEYKNEIKKD 60
MR+R G+GA+ + ++Y++ G + E Q ++++ L+TF++ L++FA E+ EIK++
Sbjct: 1 MRKRIGIGALNDDEY-LKQYEEVGNELIEQQSDEIASQLSTFQEALKTFAREHATEIKQN 59
Query: 61 AQFRRHFQEMCASIGVDPL--ASRKGFWSLLGMGDFYYELSVQIVEVCLATNYKNGGLIL 118
+QFR F ++ IG+DP S + W+ +GM +FYY+++V+++EVC AT +NGGL+
Sbjct: 60 SQFRNTFVKLALKIGLDPFVSGSDESAWAAVGMNEFYYQVAVRVIEVCYATQMENGGLLS 119
Query: 119 LDELRTRLVKSRGKSLQHQDITNEDLLAAAKKLKIFGNGFSIIPIGQGQYLVQSIPGELS 178
+ ++ R + ++ H+ + D++ A L G GF + I QY ++S+P EL+
Sbjct: 120 VSQV-CRFLNEENEAFGHEWLRETDVVRAVDSLAPLGPGFVLEKIAGKQY-IRSLPLELN 177
Query: 179 LDHSLVLQQVASKNEAHISVSVLNNELNWSTERAQHALDFMVQEGYAWIDTQSPQEHLYW 238
D ++VL+ V + ++++S+L + W R L+ +V + WID+Q E YW
Sbjct: 178 TDQNVVLEAV--EILGYVTISILRDNYAWERSRCIQVLNDLVSKSLLWIDSQGV-EMAYW 234
Query: 239 FPS 241
S
Sbjct: 235 GAS 237
>sp|Q12483|SNF8_YEAST Vacuolar-sorting protein SNF8 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=SNF8 PE=1 SV=1
Length = 233
Score = 127 bits (319), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 79/243 (32%), Positives = 128/243 (52%), Gaps = 15/243 (6%)
Query: 3 RRAGVGAIQKQKLEQEKYKDKGTSIQENQLEQLSQHLNTFRDKLESFASEYKNEIKKDAQ 62
++ G+ A + L+ KY D +I E Q +L L F+++L FA ++ +E++ +
Sbjct: 2 KQFGLAAFDE--LKDGKYNDVNKTILEKQSVELRDQLMVFQERLVEFAKKHNSELQASPE 59
Query: 63 FRRHFQEMCASIGVDPLASRKGFWSLLGMGDFYYELSVQIVEVCLATNYKNGGLILLDEL 122
FR F MC+SIG+DPL+ L + DFYYE+ ++++E+C T NGG+I EL
Sbjct: 60 FRSKFMHMCSSIGIDPLSLFDRDKHLFTVNDFYYEVCLKVIEICRQTKDMNGGVISFQEL 119
Query: 123 RTRLVKSRGKSLQHQDITNE-DLLAAAKKLKIFGNGFSIIPIGQGQYLVQSIPGELSLDH 181
V R ++ D+ D+L + + +IF +G+ ++S+P EL+ D
Sbjct: 120 EK--VHFRKLNVGLDDLEKSIDMLKSLECFEIFQI--------RGKKFLRSVPNELTSDQ 169
Query: 182 SLVLQQVASKNEAHISVSVLNNELNWSTERAQHALDFMVQEGYAWIDTQSPQEHLYWFPS 241
+ +L+ + + S+S+L L W R++ ALD MV G WID Q E LYW PS
Sbjct: 170 TKILEICSIL--GYSSISLLKANLGWEAVRSKSALDEMVANGLLWIDYQGGAEALYWDPS 227
Query: 242 LFT 244
T
Sbjct: 228 WIT 230
>sp|Q9LIJ4|VP222_ARATH Putative vacuolar protein sorting-associated protein 22 homolog 2
OS=Arabidopsis thaliana GN=VP22-2 PE=5 SV=1
Length = 120
Score = 119 bits (299), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 61/118 (51%), Positives = 83/118 (70%), Gaps = 4/118 (3%)
Query: 70 MCASIGVDPLASRKGFWS-LLGMGDFYYELSVQIVEVCLATNYKNGGLILLDELRTRLVK 128
MCA+IGVDPLAS KGFW+ LLG+GDFYYE+ VQI+EVC+ T NGGLI L EL L +
Sbjct: 1 MCANIGVDPLASNKGFWAELLGIGDFYYEIGVQIIEVCMLTRSHNGGLISLQELCNHLRQ 60
Query: 129 SRGKSLQHQDITNEDLLAAAKKLKIFGNGFSIIPIGQGQYLVQSIPGELSLDHSLVLQ 186
R + +T +D L A KLK+ G+ F +I IG+ ++ V+S+P EL+ DH+ +L+
Sbjct: 61 RR--KTDREAVTEDDCLRAISKLKLLGSRFEVITIGKKKF-VRSVPTELNKDHNHILE 115
>sp|Q9VU87|VPS36_DROME Vacuolar protein-sorting-associated protein 36 OS=Drosophila
melanogaster GN=Vps36 PE=2 SV=2
Length = 399
Score = 48.5 bits (114), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 61/254 (24%), Positives = 109/254 (42%), Gaps = 35/254 (13%)
Query: 1 MRRRAGVGAIQKQKLEQEKYKDKGTSIQENQLEQL---SQHLNTFRDKLESFASEYKNEI 57
+++R G+G I++ + K D+ ++ L L ++ + + S + K EI
Sbjct: 166 IQKRTGIGGIERHLEAKAKATDENIALAFQDLSVLMAMAKDMVGVSKTISSKIRKQKGEI 225
Query: 58 KKDAQFRRHFQEMCASIGVDPLASRKGFWSLLGMGDFYYELSVQIVEVCLATNYKNGGLI 117
D R F+ S+G+D +R F S ++ L+ QI E+ L + GG++
Sbjct: 226 SDDETVR--FKSYLMSLGIDDPVTRDNFTS---NSAYFSSLARQICEMLLDPIEEQGGMM 280
Query: 118 LLDELRTRLVKSRGKSLQHQDITNEDLLAAAKKLKIFGNGFSIIPIGQGQYLVQSIPGEL 177
L ++ R+ ++RG L ++ EDLL A ++L G ++S P
Sbjct: 281 SLADVYCRVNRARGLEL----LSPEDLLHACEQL-------------SGPIRLRSFPSGA 323
Query: 178 ------SLDHSLVLQQVASKNEAHISVSV--LNNELNWSTERAQHALDFMVQEGYAWIDT 229
S D +L+ K EA S++V L +L S A+ L +V E +
Sbjct: 324 RVLQLESHDDALIAVDTLEKVEAAESLAVEELAKQLGISLLLAKERL--LVAERLGKVCR 381
Query: 230 QSPQEHLYWFPSLF 243
E L ++P+L
Sbjct: 382 DESVEGLRFYPNLL 395
>sp|A5PK00|VPS36_BOVIN Vacuolar protein-sorting-associated protein 36 OS=Bos taurus
GN=VPS36 PE=2 SV=1
Length = 386
Score = 39.3 bits (90), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 44/175 (25%), Positives = 85/175 (48%), Gaps = 29/175 (16%)
Query: 3 RRAGVGAIQKQKLEQEKYKDKGTSIQENQLEQLSQHLNTFRDKLE---SFASEYKN---E 56
R G+ I+++ E+ K DK S E LS+ + ++ +E S A++ K+ +
Sbjct: 152 RAVGIVGIERKLEEKRKETDKNIS---EAFEDLSKLMVKAKEMVELSKSIANKIKDKQGD 208
Query: 57 IKKDAQFRRHFQEMCASIGVDPLASRKGFWSLLGMGDFYY-ELSVQIVEVCLATNYKNGG 115
I +D R F+ S+G+ +R+ + G G Y+ +L+ Q+ + A + GG
Sbjct: 209 ITEDETIR--FKSYLLSMGIANPVTRETY----GSGTQYHMQLAKQLAGILQAPLEERGG 262
Query: 116 LILLDELRTRLVKSRGKSLQHQDITNEDLLAAAK---------KLKIFGNGFSII 161
++ L E+ + ++RG L ++ EDL+ A K +L++F +G +I
Sbjct: 263 IMSLTEVYCLVNRARGMEL----LSPEDLVNACKMLEALKLPLRLRVFDSGVMVI 313
>sp|Q6DDF4|VPS36_XENLA Vacuolar protein-sorting-associated protein 36 OS=Xenopus laevis
GN=vps36 PE=2 SV=1
Length = 388
Score = 38.9 bits (89), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 41/170 (24%), Positives = 80/170 (47%), Gaps = 23/170 (13%)
Query: 5 AGVGAIQKQKLEQEKYKDKGTSIQENQLEQLSQHLNTFRDKLESFASEYKN---EIKKDA 61
G+ I+++ E+ K DK S L +L + + +S A++ K+ +I +D
Sbjct: 156 VGIVGIERKLEEKRKETDKNISEAFEDLSKLMEKAKEMVELSKSIATKIKDKQGDISEDE 215
Query: 62 QFRRHFQEMCASIGVDPLASRKGFWSLLGMGDFYY-ELSVQIVEVCLATNYKNGGLILLD 120
R F+ S+G+ +R+ G G Y+ +L+ Q+ + A + GG++ L
Sbjct: 216 TIR--FKSYLLSMGIANPVTRETH----GSGTHYHMQLAKQLATMLQAPLEERGGIMSLT 269
Query: 121 ELRTRLVKSRGKSLQHQDITNEDLLAAAK---------KLKIFGNGFSII 161
E+ + ++RG L ++ EDL+ A K +L++F +G +I
Sbjct: 270 EVYCLVNRARGMEL----LSPEDLVNACKMLESLKLPIRLRVFDSGVMVI 315
>sp|Q91XD6|VPS36_MOUSE Vacuolar protein-sorting-associated protein 36 OS=Mus musculus
GN=Vps36 PE=1 SV=1
Length = 386
Score = 38.1 bits (87), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 84/175 (48%), Gaps = 29/175 (16%)
Query: 3 RRAGVGAIQKQKLEQEKYKDKGTSIQENQLEQLSQHLNTFRDKLE---SFASEYK---NE 56
R G+ I+++ E+ K DK S E LS+ + ++ +E S A++ K +
Sbjct: 152 RAVGIVGIERKLEEKRKETDKNIS---EAFEDLSKLMIKAKEMVELSKSIANKIKEKQGD 208
Query: 57 IKKDAQFRRHFQEMCASIGVDPLASRKGFWSLLGMGDFYY-ELSVQIVEVCLATNYKNGG 115
+ +D R F+ S+G+ +R+ + G G Y+ +L+ Q+ + A + GG
Sbjct: 209 VTEDETIR--FKSYLLSMGIANPVTRETY----GSGTQYHMQLAKQLAGILQAPLEERGG 262
Query: 116 LILLDELRTRLVKSRGKSLQHQDITNEDLLAAAK---------KLKIFGNGFSII 161
++ L E+ + ++RG L ++ EDL+ A K +L++F +G +I
Sbjct: 263 IMSLTEVYCLVNRARGMEL----LSPEDLVNACKMLEALKLPIRLRVFDSGVMVI 313
>sp|Q7ZVK4|VPS36_DANRE Vacuolar protein-sorting-associated protein 36 OS=Danio rerio
GN=vps36 PE=2 SV=1
Length = 382
Score = 37.7 bits (86), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 41/172 (23%), Positives = 81/172 (47%), Gaps = 23/172 (13%)
Query: 3 RRAGVGAIQKQKLEQEKYKDKGTSIQENQLEQLSQHLNTFRDKLESFASEYKN---EIKK 59
R G+ I+++ E+ K DK S L +L + + S A++ K+ +I +
Sbjct: 152 RAVGIVGIERKLEEKRKETDKNISEAFEDLSKLMEKAKEMVELSRSIANKIKDKQGDITE 211
Query: 60 DAQFRRHFQEMCASIGVDPLASRKGFWSLLGMGDFYY-ELSVQIVEVCLATNYKNGGLIL 118
D R F+ S+G+ +R+ G G Y+ +L+ Q+ ++ A + GG++
Sbjct: 212 DETIR--FKSYLLSMGIANPVTRETH----GSGTQYHIQLAKQLGDMLQAPLEERGGMMA 265
Query: 119 LDELRTRLVKSRGKSLQHQDITNEDLLAAAK---------KLKIFGNGFSII 161
L E+ + ++RG L ++ EDL+ A K +L++F +G ++
Sbjct: 266 LTEVYCLVNRARGMEL----LSPEDLVNACKIFESLKLPLRLRVFDSGVMVV 313
>sp|P0C0A2|VPS36_RAT Vacuolar protein-sorting-associated protein 36 OS=Rattus norvegicus
GN=Vps36 PE=1 SV=1
Length = 386
Score = 37.7 bits (86), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 84/175 (48%), Gaps = 29/175 (16%)
Query: 3 RRAGVGAIQKQKLEQEKYKDKGTSIQENQLEQLSQHLNTFRDKLE---SFASEYK---NE 56
R G+ I+++ E+ K DK S E LS+ + ++ +E S A++ K +
Sbjct: 152 RAVGIVGIERKLEEKRKETDKNIS---EAFEDLSKLMIQAKEMVELSKSIANKIKEKQGD 208
Query: 57 IKKDAQFRRHFQEMCASIGVDPLASRKGFWSLLGMGDFYY-ELSVQIVEVCLATNYKNGG 115
+ +D R F+ S+G+ +R+ + G G Y+ +L+ Q+ + A + GG
Sbjct: 209 VTEDETIR--FKSYLLSMGIANPVTRETY----GSGTQYHMQLAKQLAGILQAPLEERGG 262
Query: 116 LILLDELRTRLVKSRGKSLQHQDITNEDLLAAAK---------KLKIFGNGFSII 161
++ L E+ + ++RG L ++ EDL+ A K +L++F +G +I
Sbjct: 263 IMSLTEVYCLVNRARGMEL----LSPEDLVNACKMLEGLKLPVRLRVFDSGVMVI 313
>sp|Q86VN1|VPS36_HUMAN Vacuolar protein-sorting-associated protein 36 OS=Homo sapiens
GN=VPS36 PE=1 SV=1
Length = 386
Score = 37.4 bits (85), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 84/175 (48%), Gaps = 29/175 (16%)
Query: 3 RRAGVGAIQKQKLEQEKYKDKGTSIQENQLEQLSQHLNTFRDKLE---SFASEYKN---E 56
R G+ I+++ E+ K DK S E LS+ + ++ +E S A++ K+ +
Sbjct: 152 RAVGIVGIERKLEEKRKETDKNIS---EAFEDLSKLMIKAKEMVELSKSIANKIKDKQGD 208
Query: 57 IKKDAQFRRHFQEMCASIGVDPLASRKGFWSLLGMGDFYY-ELSVQIVEVCLATNYKNGG 115
I +D R F+ S+G+ +R+ + G G Y+ +L+ Q+ + + GG
Sbjct: 209 ITEDETIR--FKSYLLSMGIANPVTRETY----GSGTQYHMQLAKQLAGILQVPLEERGG 262
Query: 116 LILLDELRTRLVKSRGKSLQHQDITNEDLLAAAK---------KLKIFGNGFSII 161
++ L E+ + ++RG L ++ EDL+ A K +L++F +G +I
Sbjct: 263 IMSLTEVYCLVNRARGMEL----LSPEDLVNACKMLEALKLPLRLRVFDSGVMVI 313
>sp|Q12440|APC2_YEAST Anaphase-promoting complex subunit 2 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=APC2 PE=1 SV=1
Length = 853
Score = 33.1 bits (74), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Query: 176 ELSLDHSLVLQQVASKNEAHISVSV--LNNELNWSTERAQHALDFMVQEG 223
++SL+ V+ Q S N+ I +S+ L+ LN + R H LDF +Q+G
Sbjct: 678 DVSLEQCSVINQFDSPNDEPICLSLEQLSESLNIAPPRLTHLLDFWIQKG 727
>sp|Q1MQ72|GLMU_LAWIP Bifunctional protein GlmU OS=Lawsonia intracellularis (strain
PHE/MN1-00) GN=glmU PE=3 SV=1
Length = 457
Score = 32.7 bits (73), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 45/90 (50%), Gaps = 3/90 (3%)
Query: 113 NGGLILLDELRTRLVKSRGKSLQHQDITNEDLLAAAKKLK-IFGNGFSIIPIGQGQYLVQ 171
+ LIL TR+ ++ K L H + L L+ +FG+ ++ IG G L+Q
Sbjct: 9 SAALILAAGKGTRMCSNKPKVL-HTLLGEPLLFHVISALRPLFGSNIWVV-IGHGSSLIQ 66
Query: 172 SIPGELSLDHSLVLQQVASKNEAHISVSVL 201
SI +LSL+ +Q+ + N I++ VL
Sbjct: 67 SICSDLSLNFIYQEKQLGTANAVSIALPVL 96
>sp|Q9UGN5|PARP2_HUMAN Poly [ADP-ribose] polymerase 2 OS=Homo sapiens GN=PARP2 PE=1 SV=2
Length = 583
Score = 32.3 bits (72), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 50/123 (40%), Gaps = 15/123 (12%)
Query: 13 QKLEQEKYKDKGTS--IQENQLEQLSQHLNTFRDKLESFASEYKNEIKKDAQFRR---HF 67
+ L+ E Y+ K S +Q S + T D E K ++D R H
Sbjct: 370 RPLDHESYEFKVISQYLQSTHAPTHSDYTMTLLDLFEVEKDGEKEAFREDLHNRMLLWHG 429
Query: 68 QEMCASIGV--------DPLASRKGFWSLLGMGDFYYELSVQIVEVCLATNYKNGGLILL 119
M +G+ P A G+ + G G ++ ++S + C A+ KN GL+LL
Sbjct: 430 SRMSNWVGILSHGLRIAPPEAPITGY--MFGKGIYFADMSSKSANYCFASRLKNTGLLLL 487
Query: 120 DEL 122
E+
Sbjct: 488 SEV 490
>sp|P91408|AGT2L_CAEEL Alanine--glyoxylate aminotransferase 2-like OS=Caenorhabditis
elegans GN=T01B11.2 PE=2 SV=1
Length = 467
Score = 32.3 bits (72), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 38/178 (21%), Positives = 75/178 (42%), Gaps = 26/178 (14%)
Query: 15 LEQEKYK-DKGTSIQENQLEQLSQHLNTFR-------------DKLESFASEYKNEIKKD 60
+E YK D G+++ + ++ + FR DKL + +Y +++K
Sbjct: 166 MELSPYKFDHGSTVSQPDWVHVAPCPDVFRGKHRLADNELTNEDKLYAAGKQYSDDVKSI 225
Query: 61 AQFRRHFQEMCASIGVDPLASRKGFWSLLGMGDFYYELSVQIVEVCLATNYKN-GGLILL 119
Q A+ + L S G ++ D++ ++ AT+ +N GGL+++
Sbjct: 226 LNDVESRQCGVAAYFAEALQSCGG--QVIPPKDYFKDV---------ATHVRNHGGLMII 274
Query: 120 DELRTRLVKSRGKSLQHQDITNEDLLAAAKKLKIFGNGFSIIPIGQGQYLVQSIPGEL 177
DE++T + K HQ + L K GNGF + + + + ++ GE+
Sbjct: 275 DEVQTGFGRIGRKYWAHQLYDDGFLPDIVTMGKPMGNGFPVSAVATRKEIADALGGEV 332
>sp|Q7ZV60|BCS1_DANRE Mitochondrial chaperone BCS1 OS=Danio rerio GN=bcs1l PE=2 SV=2
Length = 420
Score = 32.0 bits (71), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 26/114 (22%), Positives = 49/114 (42%), Gaps = 19/114 (16%)
Query: 139 ITNEDLLAAAKKLKIFGNGFSIIPIGQGQYLVQS---IPGELSLDHSLVLQQVASKNEAH 195
+T D + A K FG GF ++ +G + + + H ++ +V SK++++
Sbjct: 1 MTLSDFIGALKDNPYFGAGFGLVGVGTALAVARKGAQVGMIFFRRHYMITLEVPSKDKSY 60
Query: 196 ISVSVLNNELNWSTERAQHALDFMVQEGY-----AWIDTQ-----SPQEHLYWF 239
+ L+W T+ A+H V+ Y + TQ SP H+ W+
Sbjct: 61 ------HWLLSWITKHAKHTQHLSVETSYMQHESGKVHTQFDFHPSPGNHIIWY 108
>sp|Q08812|SYRM_RHIET HTH-type transcriptional regulator SyrM OS=Rhizobium etli GN=syrM
PE=4 SV=1
Length = 336
Score = 32.0 bits (71), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 36/84 (42%), Gaps = 18/84 (21%)
Query: 141 NEDLLAAAKKLKIFGNGFSIIPIGQGQYLVQSIPGELSLDHSLVL-QQVASKN------- 192
N+DLL + +IP QG++L Q +P L +V + V SK
Sbjct: 84 NDDLLVRSST--------GLIPTPQGEHLAQRLPSALRTIREMVTSRSVISKEWGRGATL 135
Query: 193 --EAHISVSVLNNELNWSTERAQH 214
H +++VL L W ERA H
Sbjct: 136 AIPDHQALAVLPRLLPWLRERAPH 159
>sp|P60858|HISX_CORDI Histidinol dehydrogenase OS=Corynebacterium diphtheriae (strain
ATCC 700971 / NCTC 13129 / Biotype gravis) GN=hisD PE=3
SV=1
Length = 449
Score = 30.8 bits (68), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 14/54 (25%), Positives = 32/54 (59%), Gaps = 4/54 (7%)
Query: 115 GLILLDELRTRLVKSRGKSLQHQDITNEDLLAAAKKLK----IFGNGFSIIPIG 164
G++L+D+L T ++ + + +H +I + A++++ IF G+S +P+G
Sbjct: 323 GIVLVDDLPTAVIVADAYAAEHLEIHTAESHKVAEQIRNAGAIFVGGYSPVPLG 376
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.133 0.383
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 90,680,494
Number of Sequences: 539616
Number of extensions: 3588936
Number of successful extensions: 13016
Number of sequences better than 100.0: 45
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 12958
Number of HSP's gapped (non-prelim): 49
length of query: 254
length of database: 191,569,459
effective HSP length: 115
effective length of query: 139
effective length of database: 129,513,619
effective search space: 18002393041
effective search space used: 18002393041
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)