Query psy6552
Match_columns 254
No_of_seqs 106 out of 297
Neff 6.3
Searched_HMMs 29240
Date Fri Aug 16 20:55:38 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6552.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6552hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3cuq_A Vacuolar-sorting protei 100.0 1.1E-80 3.9E-85 547.7 23.0 221 24-249 1-222 (234)
2 1u5t_A Appears to BE functiona 100.0 1.5E-80 5.1E-85 547.0 20.4 230 2-246 1-232 (233)
3 3cuq_B Vacuolar protein-sortin 100.0 2.9E-61 9.9E-66 422.2 20.5 203 28-245 6-216 (218)
4 1w7p_D VPS36P, YLR417W; ESCRT- 100.0 3.2E-49 1.1E-53 384.4 15.0 219 3-246 321-564 (566)
5 1u5t_B Defective in vacuolar p 100.0 9E-42 3.1E-46 288.0 15.0 143 92-245 10-168 (169)
6 2jt1_A PEFI protein; solution 96.8 0.0029 1E-07 46.0 6.5 59 181-239 6-68 (77)
7 2htj_A P fimbrial regulatory p 96.6 0.0063 2.2E-07 43.6 6.8 58 182-241 3-60 (81)
8 2heo_A Z-DNA binding protein 1 96.5 0.0087 3E-07 41.9 6.7 53 174-227 5-57 (67)
9 1xmk_A Double-stranded RNA-spe 96.1 0.0048 1.6E-07 45.1 3.8 46 181-228 13-59 (79)
10 3i71_A Ethanolamine utilizatio 96.1 0.017 5.8E-07 39.9 6.1 42 185-228 10-51 (68)
11 1qgp_A Protein (double strande 96.0 0.0082 2.8E-07 43.3 4.6 59 178-239 12-72 (77)
12 1p6r_A Penicillinase repressor 95.8 0.021 7.2E-07 40.7 6.3 63 176-242 6-72 (82)
13 1qbj_A Protein (double-strande 95.8 0.02 6.8E-07 41.9 6.1 57 181-240 12-69 (81)
14 1xn7_A Hypothetical protein YH 95.6 0.022 7.7E-07 41.3 5.8 45 182-228 5-49 (78)
15 2k02_A Ferrous iron transport 95.3 0.024 8.3E-07 42.1 5.0 45 182-228 5-49 (87)
16 2kko_A Possible transcriptiona 95.3 0.072 2.4E-06 40.1 7.7 77 137-240 5-81 (108)
17 3cuo_A Uncharacterized HTH-typ 95.2 0.062 2.1E-06 38.9 7.2 55 181-239 26-80 (99)
18 3jth_A Transcription activator 95.2 0.065 2.2E-06 39.2 7.2 54 182-240 26-79 (98)
19 2fbh_A Transcriptional regulat 94.9 0.12 4E-06 39.7 8.1 53 177-231 35-88 (146)
20 1oyi_A Double-stranded RNA-bin 94.7 0.062 2.1E-06 39.5 5.8 54 182-241 20-73 (82)
21 2fu4_A Ferric uptake regulatio 94.7 0.094 3.2E-06 37.2 6.8 54 177-231 15-74 (83)
22 3tgn_A ADC operon repressor AD 94.7 0.07 2.4E-06 41.1 6.5 54 174-230 33-86 (146)
23 3eco_A MEPR; mutlidrug efflux 94.7 0.098 3.3E-06 40.0 7.2 55 177-231 29-83 (139)
24 3g3z_A NMB1585, transcriptiona 94.7 0.082 2.8E-06 40.8 6.8 55 175-231 27-81 (145)
25 1r1u_A CZRA, repressor protein 94.6 0.18 6E-06 37.6 8.4 78 137-241 6-83 (106)
26 3hsr_A HTH-type transcriptiona 94.6 0.073 2.5E-06 41.1 6.3 53 177-231 34-86 (140)
27 1ku9_A Hypothetical protein MJ 94.6 0.15 5.2E-06 39.0 8.1 54 177-231 24-77 (152)
28 3oop_A LIN2960 protein; protei 94.5 0.084 2.9E-06 40.7 6.5 54 176-231 34-87 (143)
29 3r0a_A Putative transcriptiona 94.3 0.1 3.6E-06 40.3 6.6 52 177-229 24-76 (123)
30 1jgs_A Multiple antibiotic res 94.3 0.12 4.1E-06 39.4 6.9 53 177-231 32-84 (138)
31 3bj6_A Transcriptional regulat 94.2 0.15 5.2E-06 39.4 7.5 53 177-231 38-90 (152)
32 3bdd_A Regulatory protein MARR 94.1 0.12 4E-06 39.4 6.6 53 177-231 29-81 (142)
33 2k4b_A Transcriptional regulat 94.1 0.046 1.6E-06 41.2 4.1 62 176-241 32-97 (99)
34 2xvc_A ESCRT-III, SSO0910; cel 94.1 0.18 6.1E-06 34.5 6.4 46 182-228 13-58 (59)
35 2rdp_A Putative transcriptiona 94.1 0.13 4.3E-06 39.8 6.7 54 176-231 39-92 (150)
36 3bpv_A Transcriptional regulat 94.0 0.089 3E-06 40.0 5.6 52 177-230 27-78 (138)
37 2pex_A Transcriptional regulat 94.0 0.14 4.9E-06 39.8 7.0 53 177-231 45-97 (153)
38 1lj9_A Transcriptional regulat 94.0 0.13 4.4E-06 39.5 6.6 53 177-231 27-79 (144)
39 1tbx_A ORF F-93, hypothetical 94.0 0.19 6.4E-06 36.6 7.1 53 176-230 5-61 (99)
40 3cdh_A Transcriptional regulat 93.9 0.19 6.4E-06 39.2 7.5 52 177-230 41-92 (155)
41 1s3j_A YUSO protein; structura 93.9 0.12 4E-06 40.3 6.3 53 177-231 35-87 (155)
42 3nrv_A Putative transcriptiona 93.9 0.094 3.2E-06 40.5 5.7 54 176-231 37-90 (148)
43 3bro_A Transcriptional regulat 93.9 0.2 6.7E-06 38.2 7.4 55 177-231 32-86 (141)
44 2pjp_A Selenocysteine-specific 93.9 0.35 1.2E-05 37.2 8.8 95 117-230 21-115 (121)
45 2dk5_A DNA-directed RNA polyme 93.9 0.3 1E-05 36.2 8.1 55 173-227 14-68 (91)
46 3pqk_A Biofilm growth-associat 93.8 0.13 4.6E-06 37.8 6.1 53 183-240 27-79 (102)
47 1sfx_A Conserved hypothetical 93.8 0.1 3.4E-06 37.9 5.3 52 177-230 18-69 (109)
48 2gxg_A 146AA long hypothetical 93.8 0.28 9.7E-06 37.5 8.2 52 177-231 35-86 (146)
49 2cg4_A Regulatory protein ASNC 93.8 0.12 4.1E-06 40.9 6.1 49 177-227 6-54 (152)
50 3deu_A Transcriptional regulat 93.7 0.18 6.2E-06 40.3 7.2 54 177-231 51-104 (166)
51 3ech_A MEXR, multidrug resista 93.7 0.076 2.6E-06 40.9 4.7 54 176-231 34-87 (142)
52 3cjn_A Transcriptional regulat 93.7 0.17 5.6E-06 39.8 6.8 52 177-230 50-101 (162)
53 2dbb_A Putative HTH-type trans 93.6 0.14 4.8E-06 40.4 6.3 49 177-227 7-55 (151)
54 1u2w_A CADC repressor, cadmium 93.6 0.15 5.1E-06 39.2 6.2 56 182-241 45-100 (122)
55 3s2w_A Transcriptional regulat 93.6 0.12 4.1E-06 40.7 5.8 53 177-231 48-100 (159)
56 1sfu_A 34L protein; protein/Z- 93.5 0.42 1.4E-05 34.4 8.0 57 180-239 13-70 (75)
57 3k0l_A Repressor protein; heli 93.5 0.15 5E-06 40.4 6.2 53 177-231 44-96 (162)
58 2nnn_A Probable transcriptiona 93.5 0.13 4.6E-06 39.0 5.8 52 177-230 36-87 (140)
59 4hbl_A Transcriptional regulat 93.4 0.14 4.8E-06 39.9 5.9 53 177-231 39-91 (149)
60 2g9w_A Conserved hypothetical 93.4 0.26 9E-06 38.4 7.5 61 177-240 7-71 (138)
61 2nyx_A Probable transcriptiona 93.4 0.17 5.9E-06 40.3 6.5 54 176-231 42-95 (168)
62 2hr3_A Probable transcriptiona 93.3 0.16 5.3E-06 39.1 5.9 54 177-231 33-86 (147)
63 2cfx_A HTH-type transcriptiona 93.3 0.18 6.1E-06 39.7 6.3 49 177-227 3-51 (144)
64 1z91_A Organic hydroperoxide r 93.2 0.17 5.8E-06 38.9 6.1 53 177-231 38-90 (147)
65 2frh_A SARA, staphylococcal ac 93.2 0.2 6.7E-06 38.4 6.4 56 176-231 34-89 (127)
66 2qww_A Transcriptional regulat 93.1 0.25 8.5E-06 38.3 6.9 49 177-227 39-87 (154)
67 3bja_A Transcriptional regulat 93.0 0.13 4.4E-06 39.1 5.0 52 177-230 31-82 (139)
68 2ia0_A Putative HTH-type trans 93.0 0.16 5.3E-06 41.6 5.7 52 173-226 11-62 (171)
69 1sd4_A Penicillinase repressor 92.9 0.19 6.6E-06 38.0 5.9 62 175-240 6-71 (126)
70 2fbi_A Probable transcriptiona 92.8 0.17 5.9E-06 38.5 5.5 52 177-230 34-85 (142)
71 3e6m_A MARR family transcripti 92.8 0.23 7.8E-06 39.2 6.3 53 177-231 51-103 (161)
72 2fa5_A Transcriptional regulat 92.8 0.19 6.5E-06 39.4 5.8 52 177-230 47-98 (162)
73 3fm5_A Transcriptional regulat 92.8 0.14 4.9E-06 39.8 5.0 54 177-231 37-90 (150)
74 2bv6_A MGRA, HTH-type transcri 92.8 0.19 6.4E-06 38.5 5.7 53 177-231 35-87 (142)
75 2a61_A Transcriptional regulat 92.7 0.17 5.9E-06 38.7 5.4 52 177-230 31-82 (145)
76 1t6s_A Conserved hypothetical 92.7 0.34 1.2E-05 39.8 7.4 99 114-228 20-138 (162)
77 4aik_A Transcriptional regulat 92.7 0.3 1E-05 38.7 6.9 54 177-231 29-82 (151)
78 2oqg_A Possible transcriptiona 92.7 0.27 9.4E-06 36.4 6.4 47 181-230 23-69 (114)
79 3nqo_A MARR-family transcripti 92.6 0.33 1.1E-05 39.7 7.3 55 177-231 39-93 (189)
80 3f6o_A Probable transcriptiona 92.5 0.24 8.2E-06 37.7 5.9 54 182-240 21-74 (118)
81 3i4p_A Transcriptional regulat 92.4 0.18 6.2E-06 40.6 5.4 47 179-227 3-49 (162)
82 2p5v_A Transcriptional regulat 92.4 0.25 8.6E-06 39.5 6.2 50 176-227 7-56 (162)
83 2z99_A Putative uncharacterize 92.4 1.1 3.7E-05 38.6 10.4 109 101-229 18-145 (219)
84 4b8x_A SCO5413, possible MARR- 92.4 0.26 9E-06 38.7 6.2 55 177-231 33-87 (147)
85 2w25_A Probable transcriptiona 92.2 0.29 9.9E-06 38.5 6.2 49 177-227 5-53 (150)
86 1r1t_A Transcriptional repress 92.1 0.37 1.3E-05 37.1 6.6 77 138-241 27-103 (122)
87 2pn6_A ST1022, 150AA long hypo 92.0 0.25 8.7E-06 38.8 5.7 48 178-227 2-49 (150)
88 3u2r_A Regulatory protein MARR 92.0 0.23 7.9E-06 39.4 5.5 56 176-231 43-98 (168)
89 1q1h_A TFE, transcription fact 92.0 0.44 1.5E-05 35.4 6.7 46 182-228 21-66 (110)
90 3boq_A Transcriptional regulat 91.9 0.2 6.8E-06 39.2 4.9 54 177-231 45-98 (160)
91 1okr_A MECI, methicillin resis 91.9 0.19 6.5E-06 37.9 4.6 53 176-230 7-63 (123)
92 1i1g_A Transcriptional regulat 91.8 0.2 6.9E-06 38.8 4.8 49 177-227 2-50 (141)
93 2eth_A Transcriptional regulat 91.7 0.43 1.5E-05 37.2 6.7 52 177-230 42-93 (154)
94 2d1h_A ST1889, 109AA long hypo 91.5 0.54 1.9E-05 33.9 6.7 52 177-230 19-71 (109)
95 2cyy_A Putative HTH-type trans 91.5 0.28 9.4E-06 38.8 5.4 49 177-227 5-53 (151)
96 3f3x_A Transcriptional regulat 91.5 0.33 1.1E-05 37.2 5.7 52 177-231 35-86 (144)
97 2jsc_A Transcriptional regulat 91.3 0.3 1E-05 37.2 5.2 55 182-241 24-78 (118)
98 3b73_A PHIH1 repressor-like pr 91.1 0.3 1E-05 37.6 5.0 50 177-228 11-62 (111)
99 3kp7_A Transcriptional regulat 91.1 0.28 9.5E-06 38.1 4.9 48 177-227 36-83 (151)
100 1ub9_A Hypothetical protein PH 91.0 0.5 1.7E-05 33.9 6.0 47 181-229 18-64 (100)
101 3jw4_A Transcriptional regulat 91.0 0.23 7.9E-06 38.4 4.4 55 177-231 39-93 (148)
102 2v79_A DNA replication protein 91.0 0.26 8.9E-06 39.1 4.7 52 177-228 30-84 (135)
103 2fxa_A Protease production reg 90.9 0.38 1.3E-05 40.2 5.9 53 177-231 46-98 (207)
104 2lkp_A Transcriptional regulat 90.7 0.47 1.6E-05 35.6 5.8 78 137-241 12-89 (119)
105 1lva_A Selenocysteine-specific 90.6 7.7 0.00026 33.4 16.8 170 33-230 62-251 (258)
106 2yu3_A DNA-directed RNA polyme 90.6 0.67 2.3E-05 34.8 6.4 55 175-229 33-87 (95)
107 2x4h_A Hypothetical protein SS 90.5 0.58 2E-05 35.9 6.3 51 177-229 11-65 (139)
108 2xzm_8 RPS25E,; ribosome, tran 90.3 0.27 9.2E-06 39.6 4.1 47 180-226 46-94 (143)
109 2e1c_A Putative HTH-type trans 90.2 0.4 1.4E-05 39.1 5.3 50 176-227 24-73 (171)
110 2vxz_A Pyrsv_GP04; viral prote 90.0 0.47 1.6E-05 38.7 5.3 54 182-240 14-67 (165)
111 3f6v_A Possible transcriptiona 89.9 0.48 1.6E-05 38.0 5.5 55 181-240 60-114 (151)
112 2wte_A CSA3; antiviral protein 89.8 0.41 1.4E-05 41.6 5.3 53 174-228 147-199 (244)
113 2c9l_Y EB1, zebra, BZLF1 trans 89.8 0.22 7.6E-06 33.6 2.7 39 40-78 18-56 (63)
114 2qvo_A Uncharacterized protein 89.4 0.52 1.8E-05 34.2 4.8 35 195-230 30-64 (95)
115 1on2_A Transcriptional regulat 88.7 0.59 2E-05 36.0 5.1 44 184-229 13-56 (142)
116 2ve8_A FTSK, DNA translocase F 88.5 1.1 3.6E-05 32.2 5.7 48 181-230 12-59 (73)
117 1y0u_A Arsenical resistance op 88.3 1.3 4.5E-05 32.0 6.5 45 181-229 33-77 (96)
118 2pg4_A Uncharacterized protein 88.3 0.6 2E-05 33.8 4.5 36 195-230 30-66 (95)
119 3u5c_Z RP45, S31, YS23, 40S ri 88.1 0.22 7.7E-06 38.3 2.1 38 193-230 57-94 (108)
120 1p4x_A Staphylococcal accessor 87.9 1.2 4.1E-05 38.6 7.0 56 176-231 155-210 (250)
121 3hrs_A Metalloregulator SCAR; 87.9 0.82 2.8E-05 38.5 5.8 49 180-230 6-55 (214)
122 2xrn_A HTH-type transcriptiona 87.5 0.94 3.2E-05 38.7 6.0 47 183-230 10-56 (241)
123 1r7j_A Conserved hypothetical 87.4 1.5 5.1E-05 32.4 6.3 44 183-230 12-55 (95)
124 1z7u_A Hypothetical protein EF 87.3 1.3 4.4E-05 33.2 6.0 45 183-230 26-71 (112)
125 2y75_A HTH-type transcriptiona 86.9 1.9 6.4E-05 32.9 6.9 36 193-228 24-59 (129)
126 2hzt_A Putative HTH-type trans 86.9 1.8 6.3E-05 32.0 6.7 45 183-230 18-63 (107)
127 2lnb_A Z-DNA-binding protein 1 86.3 1.4 4.9E-05 31.9 5.4 59 177-241 17-75 (80)
128 2xvc_A ESCRT-III, SSO0910; cel 86.1 1.4 4.8E-05 30.1 4.9 36 109-155 18-53 (59)
129 3r4k_A Transcriptional regulat 85.6 0.79 2.7E-05 39.7 4.6 47 183-230 10-56 (260)
130 1mkm_A ICLR transcriptional re 85.4 2 6.8E-05 36.7 7.0 46 182-228 11-56 (249)
131 2h09_A Transcriptional regulat 85.2 1.1 3.8E-05 35.0 4.9 43 185-229 46-88 (155)
132 3mq0_A Transcriptional repress 85.1 1.1 3.8E-05 39.1 5.3 46 183-229 34-79 (275)
133 2fsw_A PG_0823 protein; alpha- 84.9 2.5 8.4E-05 31.2 6.5 38 193-230 36-74 (107)
134 2vn2_A DNAD, chromosome replic 84.6 2.3 7.8E-05 32.8 6.4 55 176-230 29-86 (128)
135 3k2z_A LEXA repressor; winged 84.4 1.5 5E-05 36.2 5.5 55 176-230 2-59 (196)
136 2b0l_A GTP-sensing transcripti 84.2 1.2 4.2E-05 33.3 4.5 37 193-229 40-77 (102)
137 3iz6_V 40S ribosomal protein S 84.2 0.22 7.4E-06 38.4 0.2 37 193-229 58-94 (108)
138 1hsj_A Fusion protein consisti 83.9 1.7 6E-05 40.1 6.4 58 174-231 399-456 (487)
139 2fbk_A Transcriptional regulat 83.9 0.76 2.6E-05 36.9 3.4 54 177-230 67-121 (181)
140 3nw0_A Non-structural maintena 83.7 10 0.00035 32.6 10.8 112 113-228 16-154 (238)
141 3i5g_C Myosin catalytic light 82.9 5.7 0.0002 31.1 8.3 93 38-158 7-101 (159)
142 1yyv_A Putative transcriptiona 82.9 2.6 8.9E-05 32.7 6.1 38 193-230 46-84 (131)
143 2o0y_A Transcriptional regulat 82.6 1.5 5.2E-05 37.8 5.0 38 193-230 36-73 (260)
144 2f2e_A PA1607; transcription f 82.6 3.7 0.00013 32.3 6.9 45 183-230 28-72 (146)
145 2zkz_A Transcriptional repress 82.3 2 6.7E-05 31.4 4.9 45 194-241 40-84 (99)
146 1uly_A Hypothetical protein PH 82.2 2.5 8.6E-05 35.1 6.1 46 180-228 21-66 (192)
147 2fe3_A Peroxide operon regulat 82.1 4.2 0.00014 31.9 7.1 53 178-231 21-78 (145)
148 4a5n_A Uncharacterized HTH-typ 81.9 3.8 0.00013 32.1 6.7 39 193-231 37-76 (131)
149 4fx0_A Probable transcriptiona 80.9 2.7 9.2E-05 32.8 5.6 49 177-225 31-82 (148)
150 2g7u_A Transcriptional regulat 80.4 2.1 7.3E-05 36.7 5.2 45 183-228 18-62 (257)
151 2o03_A Probable zinc uptake re 80.2 4 0.00014 31.4 6.2 49 182-231 14-67 (131)
152 2lmt_A Calmodulin-related prot 79.9 6.4 0.00022 29.8 7.4 90 39-157 9-98 (148)
153 3lmm_A Uncharacterized protein 79.7 2.3 7.8E-05 41.5 5.6 110 115-241 443-574 (583)
154 1bja_A Transcription regulator 79.6 3.8 0.00013 30.6 5.6 52 175-228 12-64 (95)
155 1mzb_A Ferric uptake regulatio 79.6 5.6 0.00019 30.8 7.0 53 178-231 17-75 (136)
156 1p4x_A Staphylococcal accessor 79.5 3.4 0.00011 35.7 6.1 58 174-231 29-86 (250)
157 3by6_A Predicted transcription 78.9 2.7 9.3E-05 32.3 4.9 38 193-230 32-70 (126)
158 3t8r_A Staphylococcus aureus C 78.5 3.9 0.00013 32.2 5.7 43 185-227 18-60 (143)
159 3tqn_A Transcriptional regulat 78.4 2.6 9E-05 31.6 4.6 36 195-230 32-68 (113)
160 3lwf_A LIN1550 protein, putati 78.4 3.9 0.00013 33.0 5.8 46 185-230 34-79 (159)
161 4ham_A LMO2241 protein; struct 77.9 2.7 9.1E-05 32.5 4.6 37 194-230 36-73 (134)
162 2ek5_A Predicted transcription 77.6 3.4 0.00012 32.0 5.1 37 194-230 26-63 (129)
163 1stz_A Heat-inducible transcri 77.6 3.8 0.00013 37.1 6.1 52 177-230 15-73 (338)
164 2kmu_A ATP-dependent DNA helic 77.2 3.9 0.00013 27.7 4.6 23 48-70 19-47 (56)
165 2ia2_A Putative transcriptiona 76.9 2.4 8.3E-05 36.6 4.4 45 183-228 25-69 (265)
166 2xig_A Ferric uptake regulatio 76.7 6.5 0.00022 31.0 6.7 59 180-240 28-91 (150)
167 3mwm_A ZUR, putative metal upt 76.4 6.6 0.00023 30.6 6.5 59 181-241 16-79 (139)
168 1j5y_A Transcriptional regulat 76.0 4.2 0.00014 33.2 5.5 45 182-227 24-69 (187)
169 3go5_A Multidomain protein wit 75.9 6.5 0.00022 34.8 7.0 72 158-230 198-280 (285)
170 3rkx_A Biotin-[acetyl-COA-carb 75.6 4.2 0.00014 36.5 5.8 47 181-227 5-51 (323)
171 1bia_A BIRA bifunctional prote 75.5 4.8 0.00016 35.9 6.1 46 181-228 7-52 (321)
172 3neu_A LIN1836 protein; struct 75.4 3.5 0.00012 31.6 4.6 34 197-230 39-72 (125)
173 3df8_A Possible HXLR family tr 75.2 6.6 0.00023 29.3 6.0 37 194-230 39-78 (111)
174 3c7j_A Transcriptional regulat 74.8 3.7 0.00013 34.8 5.0 38 193-230 47-84 (237)
175 2qc0_A Uncharacterized protein 74.5 4.1 0.00014 37.2 5.5 54 182-239 300-353 (373)
176 2obp_A Putative DNA-binding pr 74.4 13 0.00044 27.6 7.3 44 193-238 34-77 (96)
177 1ylf_A RRF2 family protein; st 74.3 4.5 0.00015 31.8 5.1 42 185-227 21-62 (149)
178 2mys_C Myosin; muscle protein, 74.0 13 0.00044 27.3 7.5 43 111-156 57-99 (149)
179 3sxy_A Transcriptional regulat 74.0 3.6 0.00012 34.1 4.6 38 193-230 33-70 (218)
180 2v9v_A Selenocysteine-specific 73.5 26 0.00091 26.3 11.6 110 105-230 6-124 (135)
181 1hw1_A FADR, fatty acid metabo 73.5 4.3 0.00015 33.9 5.1 38 193-230 28-66 (239)
182 2w57_A Ferric uptake regulatio 73.0 7.3 0.00025 30.7 6.1 52 178-230 16-73 (150)
183 2f3o_A PFLD, PFL2, pyruvate fo 72.7 48 0.0016 33.4 13.2 133 5-151 166-307 (776)
184 3fwb_A Cell division control p 72.0 16 0.00056 27.1 7.8 15 65-79 43-57 (161)
185 1z6r_A MLC protein; transcript 70.5 7 0.00024 35.4 6.1 45 181-227 18-62 (406)
186 2p4w_A Transcriptional regulat 70.4 9.7 0.00033 31.7 6.5 47 181-230 17-63 (202)
187 2hs5_A Putative transcriptiona 70.4 5.2 0.00018 33.9 4.9 38 193-230 49-86 (239)
188 2p5k_A Arginine repressor; DNA 70.2 11 0.00036 24.6 5.5 42 183-229 9-55 (64)
189 2q5c_A NTRC family transcripti 70.0 31 0.0011 28.3 9.6 148 59-221 12-182 (196)
190 2w48_A Sorbitol operon regulat 69.3 6.7 0.00023 34.6 5.5 38 193-230 19-56 (315)
191 2ovk_C Myosin catalytic light 68.8 25 0.00085 26.3 8.2 42 113-157 59-100 (159)
192 1v4r_A Transcriptional repress 68.5 1.7 5.7E-05 31.9 1.2 37 193-229 32-69 (102)
193 3f8m_A GNTR-family protein tra 67.6 6.1 0.00021 33.8 4.7 35 193-227 33-68 (248)
194 3skq_A Mitochondrial distribut 67.5 48 0.0017 28.8 10.4 80 64-155 100-182 (249)
195 3lmm_A Uncharacterized protein 67.3 5.4 0.00018 38.8 4.8 48 178-227 429-481 (583)
196 1r9d_A Glycerol dehydratase; r 67.3 88 0.003 31.5 13.7 130 5-151 175-314 (787)
197 3ihu_A Transcriptional regulat 67.2 6.8 0.00023 32.5 4.9 38 193-230 37-74 (222)
198 4a6d_A Hydroxyindole O-methylt 67.2 8 0.00027 34.5 5.7 38 193-230 41-78 (353)
199 2dg5_A Gamma-glutamyltranspept 67.0 2.9 0.0001 38.5 2.7 32 90-125 214-246 (366)
200 4a0z_A Transcription factor FA 66.7 5 0.00017 33.3 3.9 44 181-226 14-57 (190)
201 2obh_A Centrin-2; DNA repair c 66.6 21 0.00072 26.5 7.3 13 66-78 27-39 (143)
202 1fx7_A Iron-dependent represso 65.7 5.1 0.00018 33.7 3.9 36 195-230 22-59 (230)
203 3bwg_A Uncharacterized HTH-typ 65.7 8.7 0.0003 32.5 5.4 38 193-230 26-64 (239)
204 1wi9_A Protein C20ORF116 homol 65.5 6.8 0.00023 27.9 3.8 44 185-230 13-58 (72)
205 3tl4_X Glutaminyl-tRNA synthet 65.2 13 0.00046 30.9 6.3 48 49-104 16-64 (187)
206 2dk8_A DNA-directed RNA polyme 64.5 25 0.00087 25.3 6.8 55 181-238 16-71 (81)
207 2gqq_A Leucine-responsive regu 64.2 1.1 3.9E-05 35.7 -0.6 48 177-226 11-58 (163)
208 3kdg_A DNA mismatch repair pro 64.1 10 0.00036 31.3 5.4 88 138-227 66-173 (197)
209 3k69_A Putative transcription 63.9 5 0.00017 32.3 3.3 41 185-226 19-59 (162)
210 2yfw_B Histone H4, H4; cell cy 63.9 17 0.0006 27.1 6.1 61 66-151 34-94 (103)
211 2v36_A Gamma-glutamyltranspept 63.9 3.4 0.00012 38.1 2.5 32 90-125 210-242 (376)
212 3edp_A LIN2111 protein; APC883 63.3 10 0.00034 32.1 5.3 38 193-230 30-68 (236)
213 2qmc_A GGT, gamma-glutamyltran 63.2 3.6 0.00012 38.1 2.5 32 90-125 225-257 (377)
214 2l01_A Uncharacterized protein 62.8 21 0.00072 25.6 6.0 56 184-243 15-71 (77)
215 2di3_A Bacterial regulatory pr 62.3 7.7 0.00026 32.5 4.4 35 193-227 25-60 (239)
216 3dpt_A ROCO, RAB family protei 62.3 11 0.00039 33.9 5.7 133 95-247 18-170 (332)
217 1xd7_A YWNA; structural genomi 61.7 14 0.00047 28.8 5.4 39 185-226 16-54 (145)
218 2wv0_A YVOA, HTH-type transcri 61.4 8.7 0.0003 32.6 4.6 37 193-229 31-68 (243)
219 2qlz_A Transcription factor PF 60.7 6.6 0.00022 33.7 3.6 44 181-227 14-57 (232)
220 1z05_A Transcriptional regulat 60.5 8.8 0.0003 35.2 4.7 46 182-229 42-87 (429)
221 2f2o_A Calmodulin fused with c 60.4 44 0.0015 25.3 8.3 15 65-79 31-45 (179)
222 3eqx_A FIC domain containing t 60.3 8.2 0.00028 35.4 4.4 57 183-242 301-357 (373)
223 2nlz_A Cephalosporin acylase; 60.3 5.2 0.00018 38.7 3.2 32 90-125 215-247 (547)
224 3a4c_A DNA replication factor 59.1 56 0.0019 24.8 11.0 67 112-187 29-96 (106)
225 1lva_A Selenocysteine-specific 58.9 84 0.0029 26.7 15.4 130 92-243 61-201 (258)
226 3u0k_A Rcamp; fluorescent prot 58.7 12 0.00041 35.3 5.3 91 38-157 300-390 (440)
227 3u1d_A Uncharacterized protein 58.5 21 0.00072 28.7 6.1 46 183-228 33-79 (151)
228 3eet_A Putative GNTR-family tr 57.7 11 0.00037 32.7 4.6 38 193-230 50-88 (272)
229 2i3o_A Gamma-glutamyltransfera 57.6 5.5 0.00019 38.3 2.8 32 90-125 199-231 (516)
230 1ufm_A COP9 complex subunit 4; 57.6 21 0.0007 25.7 5.3 43 186-230 23-67 (84)
231 1top_A Troponin C; contractIle 56.6 36 0.0012 25.2 7.0 13 66-78 41-53 (162)
232 2e0w_A Gamma-glutamyltranspept 56.5 6.8 0.00023 38.0 3.3 32 90-125 214-246 (556)
233 3ox6_A Calcium-binding protein 56.3 54 0.0019 23.7 10.6 15 65-79 31-45 (153)
234 1qzz_A RDMB, aclacinomycin-10- 56.2 22 0.00074 31.3 6.4 37 193-229 47-83 (374)
235 2y8n_A 4-hydroxyphenylacetate 56.2 1.3E+02 0.0046 30.8 12.8 81 5-86 234-324 (897)
236 1tc3_C Protein (TC3 transposas 55.8 17 0.00059 21.5 4.2 46 174-223 3-49 (51)
237 1exr_A Calmodulin; high resolu 54.9 59 0.002 23.9 8.0 15 65-79 30-44 (148)
238 1wdc_C Scallop myosin; calcium 54.4 39 0.0013 25.0 6.9 33 42-79 11-45 (156)
239 2p8t_A Hypothetical protein PH 54.4 27 0.00094 29.3 6.3 36 194-229 29-64 (200)
240 3dp7_A SAM-dependent methyltra 54.3 23 0.00078 31.5 6.3 36 193-228 48-83 (363)
241 2r3s_A Uncharacterized protein 53.9 22 0.00076 30.6 6.0 36 193-228 37-72 (335)
242 3qrx_A Centrin; calcium-bindin 53.4 66 0.0023 24.0 8.1 14 65-78 48-61 (169)
243 1in4_A RUVB, holliday junction 53.2 1E+02 0.0034 26.8 10.3 75 137-230 236-312 (334)
244 2ip2_A Probable phenazine-spec 53.0 24 0.00084 30.5 6.1 36 194-229 40-75 (334)
245 2qq9_A Diphtheria toxin repres 52.8 22 0.00076 29.6 5.6 35 195-229 24-58 (226)
246 3f2g_A Alkylmercury lyase; MER 52.6 18 0.00061 31.0 5.0 43 183-230 26-68 (220)
247 2o0m_A Transcriptional regulat 52.4 3 0.0001 37.5 0.0 50 177-228 18-67 (345)
248 1id3_B Histone H4; nucleosome 51.9 32 0.0011 25.6 5.8 61 66-151 33-93 (102)
249 2xub_A DNA-directed RNA polyme 51.6 63 0.0022 30.7 9.2 124 97-230 261-409 (534)
250 1tw3_A COMT, carminomycin 4-O- 51.5 24 0.00083 30.9 5.9 37 193-229 50-86 (360)
251 2hoe_A N-acetylglucosamine kin 51.0 14 0.00047 33.2 4.3 44 183-229 24-67 (380)
252 1x19_A CRTF-related protein; m 51.0 26 0.0009 30.8 6.1 36 194-229 63-98 (359)
253 3akb_A Putative calcium bindin 50.4 73 0.0025 23.4 8.3 15 137-151 113-127 (166)
254 1ku3_A Sigma factor SIGA; heli 50.3 44 0.0015 22.3 5.9 44 176-219 10-54 (73)
255 2qen_A Walker-type ATPase; unk 50.2 45 0.0015 28.3 7.4 47 179-228 282-333 (350)
256 2mys_B Myosin; muscle protein, 50.1 77 0.0026 23.6 8.6 15 65-79 45-60 (166)
257 3maj_A DNA processing chain A; 50.1 20 0.00068 33.1 5.2 50 176-228 325-374 (382)
258 3cta_A Riboflavin kinase; stru 49.9 23 0.00077 29.5 5.2 52 178-229 6-61 (230)
259 3i53_A O-methyltransferase; CO 49.7 37 0.0013 29.4 6.8 37 193-229 36-72 (332)
260 3dpu_A RAB family protein; roc 49.4 11 0.00037 35.6 3.4 118 114-246 235-372 (535)
261 1tzy_D Histone H4-VI; histone- 49.0 34 0.0012 25.4 5.5 61 66-151 34-94 (103)
262 4g6q_A Putative uncharacterize 48.9 23 0.00078 28.7 4.9 45 183-230 27-72 (182)
263 1fse_A GERE; helix-turn-helix 48.6 43 0.0015 21.9 5.6 41 176-220 11-51 (74)
264 3o2p_E Cell division control p 47.8 25 0.00084 25.7 4.4 36 201-239 51-86 (88)
265 3qyf_A Crispr-associated prote 47.6 7.7 0.00026 35.2 2.0 68 166-243 198-266 (324)
266 2pjp_A Selenocysteine-specific 47.6 57 0.0019 24.4 6.7 61 178-242 2-63 (121)
267 3eyy_A Putative iron uptake re 47.6 43 0.0015 26.0 6.2 49 180-230 20-73 (145)
268 1dtl_A Cardiac troponin C; hel 46.6 68 0.0023 23.6 7.1 43 113-157 68-110 (161)
269 4ds7_A Calmodulin, CAM; protei 46.5 26 0.00088 25.5 4.6 14 65-78 31-44 (147)
270 4ets_A Ferric uptake regulatio 46.5 52 0.0018 26.1 6.7 60 180-241 34-100 (162)
271 1alv_A Calpain, S-camld; calci 46.4 53 0.0018 25.0 6.6 34 39-78 3-37 (173)
272 1ggw_A Protein (CDC4P); light 46.3 79 0.0027 22.7 8.0 14 65-78 25-38 (140)
273 2o8x_A Probable RNA polymerase 46.2 57 0.0019 21.0 5.9 41 176-219 15-55 (70)
274 2zcw_A TTHA1359, transcription 45.9 28 0.00097 27.4 5.0 35 195-229 146-180 (202)
275 3nr7_A DNA-binding protein H-N 45.6 50 0.0017 24.0 5.8 48 31-78 25-75 (86)
276 2oz6_A Virulence factor regula 45.6 28 0.00097 27.2 5.0 35 195-229 164-198 (207)
277 2qlz_A Transcription factor PF 45.5 18 0.00062 30.9 3.9 38 193-230 176-213 (232)
278 3tdu_C Cullin-1, CUL-1; E2:E3, 45.4 26 0.00089 24.9 4.1 37 201-239 39-75 (77)
279 2p7v_B Sigma-70, RNA polymeras 45.3 59 0.002 21.3 5.9 46 176-221 5-51 (68)
280 1tty_A Sigma-A, RNA polymerase 45.2 54 0.0018 22.8 5.9 45 176-220 18-63 (87)
281 3i5g_B Myosin regulatory light 45.1 20 0.00067 27.7 3.8 37 39-80 15-51 (153)
282 3ryp_A Catabolite gene activat 45.0 30 0.001 27.2 5.0 36 195-230 167-202 (210)
283 3ic7_A Putative transcriptiona 44.8 3.5 0.00012 31.7 -0.7 36 195-230 34-70 (126)
284 2pi2_A Replication protein A 3 44.4 4.7 0.00016 35.2 0.0 53 177-229 205-261 (270)
285 3pfi_A Holliday junction ATP-d 44.3 1.5E+02 0.0051 25.3 9.9 73 137-229 240-314 (338)
286 3qph_A TRMB, A global transcri 44.1 1.9 6.4E-05 39.1 -2.7 45 193-240 30-74 (342)
287 1jhf_A LEXA repressor; LEXA SO 43.7 30 0.001 27.9 4.9 55 176-230 3-61 (202)
288 1fnn_A CDC6P, cell division co 43.7 41 0.0014 29.2 6.1 80 137-230 260-353 (389)
289 3hug_A RNA polymerase sigma fa 43.5 57 0.0019 22.8 5.9 40 177-219 38-77 (92)
290 2gau_A Transcriptional regulat 43.1 36 0.0012 27.3 5.3 35 195-229 180-214 (232)
291 3b02_A Transcriptional regulat 43.0 32 0.0011 27.0 4.9 34 196-229 140-173 (195)
292 2bl0_C Myosin regulatory light 42.7 63 0.0022 23.3 6.3 14 65-78 26-39 (142)
293 3iwz_A CAP-like, catabolite ac 42.7 33 0.0011 27.3 5.0 34 196-229 188-221 (230)
294 3dv8_A Transcriptional regulat 42.6 34 0.0012 27.1 5.0 35 195-229 169-203 (220)
295 2jt1_A PEFI protein; solution 42.4 54 0.0018 23.0 5.4 45 100-155 7-52 (77)
296 2l02_A Uncharacterized protein 42.3 51 0.0017 23.9 5.3 55 183-241 12-66 (82)
297 1cf7_A Protein (transcription 42.2 47 0.0016 23.4 5.1 47 183-229 18-65 (76)
298 4ev0_A Transcription regulator 42.0 34 0.0012 26.9 5.0 35 195-229 163-197 (216)
299 3e97_A Transcriptional regulat 41.9 31 0.0011 27.7 4.8 35 195-229 175-209 (231)
300 3eyi_A Z-DNA-binding protein 1 41.9 43 0.0015 23.6 4.6 54 176-231 6-61 (72)
301 1qv0_A Obelin, OBL; photoprote 41.4 59 0.002 24.9 6.2 13 115-127 128-140 (195)
302 2pju_A Propionate catabolism o 41.0 1.3E+02 0.0043 25.4 8.6 82 138-221 89-193 (225)
303 2k6x_A Sigma-A, RNA polymerase 41.0 35 0.0012 23.5 4.2 46 184-231 14-64 (72)
304 3gwz_A MMCR; methyltransferase 40.6 26 0.00089 31.2 4.4 37 193-229 69-105 (369)
305 3lst_A CALO1 methyltransferase 40.4 37 0.0013 29.7 5.3 35 193-227 53-87 (348)
306 2ozu_A Histone acetyltransfera 40.2 28 0.00094 30.9 4.3 41 101-155 202-242 (284)
307 3la7_A Global nitrogen regulat 40.0 37 0.0013 27.7 5.0 35 195-229 193-227 (243)
308 4fxe_A Antitoxin RELB; toxin/a 39.7 14 0.00048 26.4 1.9 24 57-80 6-29 (79)
309 3d0s_A Transcriptional regulat 39.6 39 0.0013 27.0 5.0 35 195-229 177-211 (227)
310 2do7_A Cullin-4B, CUL-4B; heli 39.5 1E+02 0.0034 22.9 6.8 45 185-231 37-87 (101)
311 1zg3_A Isoflavanone 4'-O-methy 39.3 49 0.0017 29.0 6.0 36 193-228 43-81 (358)
312 3mcz_A O-methyltransferase; ad 38.8 36 0.0012 29.6 5.0 36 194-229 55-90 (352)
313 2jnf_A Troponin C; stretch act 38.6 1.1E+02 0.0039 22.3 7.7 14 65-78 34-47 (158)
314 1je8_A Nitrate/nitrite respons 38.0 61 0.0021 22.3 5.2 44 173-220 18-61 (82)
315 2kn2_A Calmodulin; S MAPK phos 37.2 87 0.003 21.0 5.9 33 113-148 58-90 (92)
316 1wdc_B Scallop myosin; calcium 37.0 80 0.0027 23.2 6.1 15 65-79 38-52 (156)
317 3j04_B Myosin regulatory light 36.8 20 0.00068 26.2 2.5 15 65-79 27-41 (143)
318 2ra5_A Putative transcriptiona 36.7 9.5 0.00033 32.5 0.7 37 194-230 38-75 (247)
319 3e6c_C CPRK, cyclic nucleotide 36.6 41 0.0014 27.5 4.8 36 195-230 177-212 (250)
320 2fmy_A COOA, carbon monoxide o 36.6 38 0.0013 27.0 4.4 34 195-228 167-200 (220)
321 2lhi_A Calmodulin, serine/thre 36.5 31 0.0011 27.1 3.8 15 65-79 31-45 (176)
322 2qby_A CDC6 homolog 1, cell di 36.4 1.6E+02 0.0055 25.0 8.8 93 137-243 258-364 (386)
323 3dkw_A DNR protein; CRP-FNR, H 36.3 36 0.0012 27.1 4.2 35 195-229 178-212 (227)
324 3eez_A Putative mandelate race 35.9 20 0.00067 32.5 2.8 77 138-230 143-222 (378)
325 1ft9_A Carbon monoxide oxidati 35.9 39 0.0013 27.0 4.4 36 195-230 163-198 (222)
326 1zyb_A Transcription regulator 35.5 43 0.0015 27.1 4.6 35 195-229 186-220 (232)
327 3g2b_A Coenzyme PQQ synthesis 35.5 1.3E+02 0.0043 21.9 7.5 67 154-225 15-93 (95)
328 3ozy_A Putative mandelate race 35.3 17 0.00059 33.1 2.3 81 138-231 149-230 (389)
329 2v7f_A RPS19, RPS19E SSU ribos 35.3 35 0.0012 27.2 3.9 90 138-230 6-116 (150)
330 3mwm_A ZUR, putative metal upt 34.8 80 0.0027 24.2 5.9 57 99-166 16-72 (139)
331 1fp1_D Isoliquiritigenin 2'-O- 34.7 54 0.0018 29.0 5.5 33 196-228 63-101 (372)
332 1nya_A Calerythrin; EF-hand, m 34.5 1.4E+02 0.0048 22.1 8.0 60 61-129 27-87 (176)
333 3ulq_B Transcriptional regulat 34.3 85 0.0029 22.2 5.6 41 176-220 29-69 (90)
334 3f8t_A Predicted ATPase involv 33.9 34 0.0012 32.8 4.2 26 124-153 460-485 (506)
335 2bgc_A PRFA; bacterial infecti 33.9 46 0.0016 27.0 4.6 35 195-229 169-204 (238)
336 1x3u_A Transcriptional regulat 33.9 79 0.0027 21.0 5.1 40 177-220 17-56 (79)
337 3c57_A Two component transcrip 33.8 93 0.0032 22.0 5.7 41 176-220 27-67 (95)
338 2fe3_A Peroxide operon regulat 33.7 92 0.0032 23.9 6.1 47 100-156 25-71 (145)
339 3mse_B Calcium-dependent prote 33.3 1.6E+02 0.0054 22.4 9.7 13 65-77 59-71 (180)
340 1mgp_A Hypothetical protein TM 33.3 2.5E+02 0.0086 24.7 9.8 103 116-229 69-191 (313)
341 4e97_A Lysozyme; hydrolase, al 32.7 17 0.00057 29.8 1.6 79 23-102 77-156 (187)
342 3kcc_A Catabolite gene activat 32.5 52 0.0018 27.2 4.8 35 195-229 217-251 (260)
343 1fp2_A Isoflavone O-methyltran 32.4 60 0.002 28.4 5.3 36 193-228 49-87 (352)
344 2iut_A DNA translocase FTSK; n 32.4 13 0.00043 36.3 0.9 92 137-230 449-552 (574)
345 1ldj_A Cullin homolog 1, CUL-1 31.9 1.4E+02 0.0049 29.5 8.5 83 139-228 538-636 (760)
346 2k9l_A RNA polymerase sigma fa 31.9 93 0.0032 21.5 5.3 44 100-154 31-75 (76)
347 1p4w_A RCSB; solution structur 31.7 85 0.0029 22.8 5.3 41 175-219 33-73 (99)
348 2xns_C RGS14, regulator of G-p 31.0 58 0.002 20.1 3.4 32 120-151 3-36 (40)
349 1or7_A Sigma-24, RNA polymeras 30.8 1E+02 0.0035 23.8 6.0 40 177-219 141-180 (194)
350 1jba_A GCAP-2, protein (guanyl 30.7 1.4E+02 0.0049 23.1 7.0 24 183-206 152-175 (204)
351 3ro6_B Putative chloromuconate 30.7 24 0.00082 31.6 2.4 79 139-230 139-218 (356)
352 1zl8_A LIN-7; heterodimer, alp 30.7 27 0.00093 23.1 2.0 15 141-155 6-20 (53)
353 2fna_A Conserved hypothetical 30.5 96 0.0033 26.2 6.2 48 177-228 288-341 (357)
354 3cs1_A Flagellar calcium-bindi 29.8 1.2E+02 0.0041 24.2 6.5 15 137-151 145-159 (219)
355 1rp3_A RNA polymerase sigma fa 29.7 1.1E+02 0.0037 24.4 6.2 40 177-219 188-227 (239)
356 3nyv_A Calmodulin-domain prote 29.7 75 0.0026 28.8 5.7 79 61-158 355-434 (484)
357 3r0u_A Enzyme of enolase super 29.1 36 0.0012 30.9 3.3 77 139-230 141-222 (379)
358 3t72_q RNA polymerase sigma fa 29.0 1.1E+02 0.0038 22.3 5.5 43 177-219 20-63 (99)
359 3dtp_E RLC, myosin regulatory 28.9 1.3E+02 0.0044 23.5 6.4 15 65-79 77-91 (196)
360 1taf_A TFIID TBP associated fa 28.7 1.1E+02 0.0037 21.1 5.0 14 137-150 52-65 (68)
361 2w7n_A TRFB transcriptional re 28.6 78 0.0027 23.5 4.6 27 194-220 33-59 (101)
362 3b09_A Peptidyl-prolyl CIS-tra 28.4 1.6E+02 0.0056 21.0 6.8 54 93-152 31-85 (88)
363 3ncv_A DNA mismatch repair pro 28.4 49 0.0017 27.8 3.8 90 138-227 88-196 (220)
364 1r42_A Angiotensin I convertin 28.3 1.1E+02 0.0038 29.4 6.9 64 66-151 525-591 (615)
365 2o03_A Probable zinc uptake re 28.0 1.2E+02 0.0041 22.7 5.8 58 99-167 13-70 (131)
366 1q80_A SCP, sarcoplasmic calci 27.8 1.8E+02 0.0063 21.4 9.4 23 182-204 131-153 (174)
367 1nya_A Calerythrin; EF-hand, m 27.6 1.8E+02 0.0063 21.4 7.3 47 103-157 104-151 (176)
368 3g9k_L Capsule biosynthesis pr 27.4 23 0.00077 32.0 1.6 27 90-125 189-216 (323)
369 3b0c_W CENP-W, centromere prot 26.8 92 0.0032 21.5 4.5 16 137-152 56-71 (76)
370 4ets_A Ferric uptake regulatio 26.6 1.1E+02 0.0039 24.0 5.6 65 65-156 18-84 (162)
371 1n93_X P40 nucleoprotein; RNA 26.5 93 0.0032 27.6 5.3 43 34-76 137-180 (375)
372 1w7j_B Myosin light chain 1; m 26.4 33 0.0011 25.2 2.2 17 113-129 61-77 (151)
373 1k2h_A S100A1, S-100 protein, 26.3 1.1E+02 0.0038 20.4 4.9 13 116-128 27-39 (93)
374 1xma_A Predicted transcription 26.3 1E+02 0.0035 23.9 5.2 46 181-229 43-96 (145)
375 2ovk_B RLC, myosin regulatory 26.1 93 0.0032 22.7 4.8 34 114-153 99-132 (153)
376 3lij_A Calcium/calmodulin depe 26.1 47 0.0016 30.5 3.6 51 102-158 391-442 (494)
377 2rnj_A Response regulator prot 26.0 90 0.0031 21.7 4.4 41 176-220 29-69 (91)
378 2fu4_A Ferric uptake regulatio 25.8 1.4E+02 0.0048 20.0 5.4 47 101-156 21-67 (83)
379 1xsv_A Hypothetical UPF0122 pr 25.7 1.7E+02 0.0057 21.5 6.1 39 177-218 26-64 (113)
380 1mzb_A Ferric uptake regulatio 25.7 1.2E+02 0.0042 22.8 5.5 47 100-156 21-68 (136)
381 4dwd_A Mandelate racemase/muco 25.7 35 0.0012 31.1 2.6 86 139-230 138-225 (393)
382 2lfw_A PHYR sigma-like domain; 25.7 80 0.0027 24.1 4.5 41 176-219 93-133 (157)
383 1tiz_A Calmodulin-related prot 25.6 1.2E+02 0.0041 18.5 5.7 33 114-152 15-47 (67)
384 3mwu_A Calmodulin-domain prote 25.5 1.6E+02 0.0055 26.6 7.2 82 61-158 351-433 (486)
385 1x9z_A DNA mismatch repair pro 25.4 53 0.0018 26.6 3.4 84 138-222 64-160 (188)
386 4a35_A Mitochondrial enolase s 25.3 33 0.0011 31.9 2.4 80 139-231 200-280 (441)
387 2w57_A Ferric uptake regulatio 25.3 1.3E+02 0.0045 23.2 5.7 48 100-157 20-68 (150)
388 4b4t_R RPN7, 26S proteasome re 25.1 82 0.0028 28.7 5.0 44 185-230 339-384 (429)
389 3p9c_A Caffeic acid O-methyltr 25.0 95 0.0033 27.4 5.4 35 194-228 55-94 (364)
390 3q45_A Mandelate racemase/muco 25.0 21 0.00071 32.2 0.9 79 139-230 139-218 (368)
391 3sjs_A URE3-BP sequence specif 24.7 1.6E+02 0.0053 23.7 6.3 12 66-77 72-83 (220)
392 1jko_C HIN recombinase, DNA-in 24.7 1.1E+02 0.0036 18.0 4.1 37 176-216 5-42 (52)
393 2krc_A DNA-directed RNA polyme 24.6 64 0.0022 24.0 3.4 64 102-172 15-79 (99)
394 3eyy_A Putative iron uptake re 24.6 1.5E+02 0.005 22.8 5.8 47 100-157 22-68 (145)
395 1ug2_A 2610100B20RIK gene prod 24.0 1.7E+02 0.006 21.5 5.6 42 179-221 39-82 (95)
396 4eto_A Protein S100-A4; calciu 23.9 1.9E+02 0.0064 20.2 6.1 40 115-155 27-66 (93)
397 3pl5_A SMU_165, putative uncha 23.7 3.8E+02 0.013 23.6 10.5 46 117-164 79-124 (320)
398 1m45_A MLC1P, myosin light cha 23.4 1.3E+02 0.0046 21.6 5.2 16 114-129 55-70 (148)
399 2ius_A DNA translocase FTSK; n 22.6 18 0.00062 34.6 0.0 90 138-230 404-499 (512)
400 3jtn_A YPBH, adapter protein M 22.5 2.1E+02 0.0072 20.2 7.7 48 140-189 9-57 (91)
401 2qm3_A Predicted methyltransfe 22.5 65 0.0022 28.7 3.7 36 194-229 54-89 (373)
402 3nso_A Protein S100-A3; EF-han 22.4 2.2E+02 0.0075 20.4 7.4 44 112-157 22-68 (101)
403 2l0k_A Stage III sporulation p 22.3 68 0.0023 23.4 3.1 35 181-218 9-43 (93)
404 1yg2_A Gene activator APHA; vi 22.1 1.7E+02 0.0057 23.1 5.8 45 183-230 6-58 (179)
405 3ugv_A Enolase; enzyme functio 21.9 31 0.001 31.4 1.4 82 139-230 170-253 (390)
406 2nr3_A Hypothetical protein; A 21.8 3.4E+02 0.011 22.4 8.3 123 116-245 45-177 (183)
407 2jpc_A SSRB; DNA binding prote 21.8 1.5E+02 0.0052 18.4 4.8 36 181-220 3-38 (61)
408 1s6j_A CDPK, calcium-dependent 21.5 1.8E+02 0.006 19.0 5.1 39 113-157 36-74 (87)
409 2xig_A Ferric uptake regulatio 21.3 2.8E+02 0.0096 21.2 7.2 57 100-167 30-86 (150)
410 3mzy_A RNA polymerase sigma-H 21.2 1.8E+02 0.0061 21.4 5.6 39 177-219 110-148 (164)
411 2qac_A Myosin A tail domain in 21.2 2.3E+02 0.0079 20.2 7.7 32 43-79 17-49 (146)
412 3euh_C MUKE, chromosome partit 21.0 1.3E+02 0.0046 25.7 5.1 109 23-155 32-166 (234)
413 2r2i_A Guanylyl cyclase-activa 21.0 2.4E+02 0.0082 21.6 6.5 27 183-209 135-161 (198)
414 1gjy_A Sorcin, CP-22, V19; cal 21.0 2.6E+02 0.0088 20.7 7.3 13 65-77 21-33 (167)
415 1s7o_A Hypothetical UPF0122 pr 20.9 1.6E+02 0.0054 21.8 5.1 40 177-219 23-62 (113)
416 3i4k_A Muconate lactonizing en 20.7 80 0.0027 28.4 4.0 78 140-230 148-228 (383)
417 3toy_A Mandelate racemase/muco 20.6 47 0.0016 30.1 2.4 81 139-230 166-247 (383)
418 2qgq_A Protein TM_1862; alpha- 20.5 1.8E+02 0.0062 24.9 6.2 47 139-190 136-182 (304)
419 1y14_A B32, RPB4, DNA-directed 20.3 2.7E+02 0.0091 23.0 6.7 63 59-154 121-183 (187)
420 3u0k_A Rcamp; fluorescent prot 20.3 5.2E+02 0.018 24.1 9.5 18 25-42 294-311 (440)
421 4etr_A Putative uncharacterize 20.2 2.8E+02 0.0095 21.4 6.7 41 29-71 10-50 (153)
422 2xub_A DNA-directed RNA polyme 20.2 98 0.0033 29.4 4.6 48 193-241 31-78 (534)
423 3fx3_A Cyclic nucleotide-bindi 20.2 71 0.0024 25.5 3.2 30 195-224 178-207 (237)
424 1k94_A Grancalcin; penta-EF-ha 20.2 2.6E+02 0.009 20.5 8.4 14 65-78 19-32 (165)
425 3zwh_A Protein S100-A4; Ca-bin 20.2 2.5E+02 0.0085 20.2 6.5 44 112-156 25-70 (104)
426 2v9v_A Selenocysteine-specific 20.1 2.5E+02 0.0085 20.6 6.2 35 195-229 17-52 (135)
427 2qby_B CDC6 homolog 3, cell di 20.1 3.3E+02 0.011 23.2 7.8 80 137-230 256-341 (384)
No 1
>3cuq_A Vacuolar-sorting protein SNF8; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_A
Probab=100.00 E-value=1.1e-80 Score=547.67 Aligned_cols=221 Identities=54% Similarity=1.002 Sum_probs=206.2
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCHHHHHHHHHHHHHcCCCcccCCCcccc-ccccchhHHHHHHHH
Q psy6552 24 GTSIQENQLEQLSQHLNTFRDKLESFASEYKNEIKKDAQFRRHFQEMCASIGVDPLASRKGFWS-LLGMGDFYYELSVQI 102 (254)
Q Consensus 24 g~~l~~~~~~~L~~ql~~fk~~L~~FA~kh~~~I~~dp~fr~~f~~mc~~lGVdPl~s~kg~w~-~lg~gdfy~eLavqi 102 (254)
|+++.++++++|++||++||++|++||+||+++|++||+||++|++||++||||||+++||||+ ++|+|||||||||||
T Consensus 1 g~~l~~~~~~~~~~Ql~~F~~~L~~FA~kH~~eI~~dp~fR~~F~~mc~siGVDPlas~kg~ws~~lG~gdfy~eLavqI 80 (234)
T 3cuq_A 1 GTVLAEDQLAQMSKQLDMFKTNLEEFASKHKQEIRKNPEFRVQFQDMCATIGVDPLASGKGFWSEMLGVGDFYYELGVQI 80 (234)
T ss_dssp ---------CTTHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTCCTTSCTTSHHHHHHCHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccCHHHHHHHHHHHHHcCCCcccCCcchhhhhcCcchHHHHHHHHH
Confidence 4568888999999999999999999999999999999999999999999999999999999999 999999999999999
Q ss_pred HHHhhhhhhhcCCceeHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHhhhhCCCeEEEEeCCceEEEEccCCCCChhHH
Q psy6552 103 VEVCLATNYKNGGLILLDELRTRLVKSRGKSLQHQDITNEDLLAAAKKLKIFGNGFSIIPIGQGQYLVQSIPGELSLDHS 182 (254)
Q Consensus 103 ve~c~~~r~~nGGii~L~dl~~~~nr~Rg~~~~~~~IS~~Di~rA~~~L~~Lg~g~~l~~~~sg~~vv~s~p~els~D~~ 182 (254)
+|+|.+||++|||||+|+||+|++||+||..+ ++|||+||+|||++|++||+||+|++|+ |++||||+|.|+|+||+
T Consensus 81 vEvC~~tr~~nGGli~L~el~~~~~r~Rg~~~--~~IS~dDi~rAik~L~~LG~g~~v~~~~-g~~~VqSvp~el~~D~~ 157 (234)
T 3cuq_A 81 IEVCLALKHRNGGLITLEELHQQVLKGRGKFA--QDVSQDDLIRAIKKLKALGTGFGIIPVG-GTYLIQSVPAELNMDHT 157 (234)
T ss_dssp HHHHHHHHHHHSSEEEHHHHHHHHHHTTTTCC--SSCCHHHHHHHHHHHGGGBTTCEEEEET-TEEEEECSCCCCCHHHH
T ss_pred HHHHHHHHHhcCCeeEHHHHHHHHHHhcCCcc--CccCHHHHHHHHHHHHhcCCCeEEEEEC-CEEEEEeCCCccchHHH
Confidence 99999999999999999999999999999866 7999999999999999999999999999 99999999999999999
Q ss_pred HHHHHhhccCCCcccHHHHHHhcCCCHHHHHHHHHHHHHcCcEEEeCCCCCcccceecccccCcccc
Q psy6552 183 LVLQQVASKNEAHISVSVLNNELNWSTERAQHALDFMVQEGYAWIDTQSPQEHLYWFPSLFTECMNA 249 (254)
Q Consensus 183 ~il~l~~~~~~g~vt~~~l~~~l~ws~~ra~~~L~~l~~~G~lwvD~q~~~e~~yw~p~lf~~~~~~ 249 (254)
.||++|+ ..||||+++|++++||+++||+++|++|+++|++|||+|.++|+.|||||+|.+..++
T Consensus 158 ~vLela~--~~g~vt~~~L~~~l~W~~~Ra~~~L~~l~~~GllwvD~q~~ge~~Yw~P~lf~~~~~~ 222 (234)
T 3cuq_A 158 VVLQLAE--KNGYVTVSEIKASLKWETERARQVLEHLLKEGLAWLDLQAPGEAHYWLPALFTDLYSQ 222 (234)
T ss_dssp HHHHHHT--TTSEECHHHHHHHHTCCHHHHHHHHHHHHHHTSCEEESSSSSSCEEECTTSSCCCCCC
T ss_pred HHHHHHH--hcCcCcHHHHHHHhCCCHHHHHHHHHHHHhCCCEEEeCCCCCcceeecchhhcccccc
Confidence 9999999 6799999999999999999999999999999999999997678999999999976654
No 2
>1u5t_A Appears to BE functionally related to SNF7; SNF8P; ESCRT, endosomal, trafficking, protein complex, transport protein; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54 PDB: 1w7p_A
Probab=100.00 E-value=1.5e-80 Score=546.95 Aligned_cols=230 Identities=34% Similarity=0.628 Sum_probs=205.1
Q ss_pred CcchhhHHHhccHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCHHHHHHHHHHHHHcCCCccc-
Q psy6552 2 RRRAGVGAIQKQKLEQEKYKDKGTSIQENQLEQLSQHLNTFRDKLESFASEYKNEIKKDAQFRRHFQEMCASIGVDPLA- 80 (254)
Q Consensus 2 rR~vGi~~i~~~~~~~~~~~~~g~~l~~~~~~~L~~ql~~fk~~L~~FA~kh~~~I~~dp~fr~~f~~mc~~lGVdPl~- 80 (254)
||+|||+||+ ++++++|+++|+++.++++++|++||++||++|++||+||+++|++||+||++|++||++||||||+
T Consensus 1 rr~~G~~a~~--~~~~~~~~~~g~~l~~~~~~~l~~Ql~~F~~~L~~FA~kHk~eI~~dp~fR~~F~~mc~siGVDPLa~ 78 (233)
T 1u5t_A 1 MKQFGLAAFD--ELKDGKYNDVNKTILEKQSVELRDQLMVFQERLVEFAKKHNSELQASPEFRSKFMHMCSSIGIDPLSL 78 (233)
T ss_dssp ---------------------CCSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTTTTCHHHHHHHHHHHHHHTCCHHHH
T ss_pred CCCccHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcccCHHHHHHHHHHHHHcCCCCCcc
Confidence 6889999999 6789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcccc-ccccchhHHHHHHHHHHHhhhhhhhcCCceeHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHhhhhCCCeE
Q psy6552 81 SRKGFWS-LLGMGDFYYELSVQIVEVCLATNYKNGGLILLDELRTRLVKSRGKSLQHQDITNEDLLAAAKKLKIFGNGFS 159 (254)
Q Consensus 81 s~kg~w~-~lg~gdfy~eLavqive~c~~~r~~nGGii~L~dl~~~~nr~Rg~~~~~~~IS~~Di~rA~~~L~~Lg~g~~ 159 (254)
|+|| + ++|+|||||||||||+|+|.+||++|||||+|+||+|++||+ ++|||+||++||++|++| .||+
T Consensus 79 s~kg--~~~lg~gdfy~eLavqIvEvC~~tr~~nGGli~l~el~~~~~r~-------~~IS~dDi~rAik~L~~L-~gf~ 148 (233)
T 1u5t_A 79 FDRD--KHLFTVNDFYYEVCLKVIEICRQTKDMNGGVISFQELEKVHFRK-------LNVGLDDLEKSIDMLKSL-ECFE 148 (233)
T ss_dssp TTSS--GGGTTHHHHHHHHHHHHHHHHHHHTTTSSSCEEHHHHHHTTTTT-------TTCCHHHHHHHHHHHTTT-CCCC
T ss_pred CCcc--ccccCcchHHHHHHHHHHHHHHHHHHhcCCeeEHHHHHHHHHhh-------cCCCHHHHHHHHHHhhhc-cCeE
Confidence 9998 7 999999999999999999999999999999999999999997 589999999999999999 9999
Q ss_pred EEEeCCceEEEEccCCCCChhHHHHHHHhhccCCCcccHHHHHHhcCCCHHHHHHHHHHHHHcCcEEEeCCCCCccccee
Q psy6552 160 IIPIGQGQYLVQSIPGELSLDHSLVLQQVASKNEAHISVSVLNNELNWSTERAQHALDFMVQEGYAWIDTQSPQEHLYWF 239 (254)
Q Consensus 160 l~~~~sg~~vv~s~p~els~D~~~il~l~~~~~~g~vt~~~l~~~l~ws~~ra~~~L~~l~~~G~lwvD~q~~~e~~yw~ 239 (254)
+++++ |++||||+|.|+|+||+.||++|+ ..||||+++|++++||+++||+++|++|+++|++|||+|.++|+.|||
T Consensus 149 v~~v~-g~~~vqsvp~el~~D~~~vLe~a~--~~g~vt~~~L~~~lgW~~~Ra~~~L~~l~~~G~lwvD~q~~~e~~Yw~ 225 (233)
T 1u5t_A 149 IFQIR-GKKFLRSVPNELTSDQTKILEICS--ILGYSSISLLKANLGWEAVRSKSALDEMVANGLLWIDYQGGAEALYWD 225 (233)
T ss_dssp EEEET-TEEEECCSSSCCCTTHHHHHHTTT--TTSCCBHHHHHHHHCCCSHHHHHHHHHHHHTTSSEEECSSSSSCEEEC
T ss_pred EEEEC-CEEEEEeCCCccchHHHHHHHHHH--hcCcCcHHHHHHHhCCCHHHHHHHHHHHHHCCCEEEeCCCCCccceec
Confidence 99999 999999999999999999999999 679999999999999999999999999999999999999756899999
Q ss_pred cccccCc
Q psy6552 240 PSLFTEC 246 (254)
Q Consensus 240 p~lf~~~ 246 (254)
||+|.+.
T Consensus 226 P~lf~~~ 232 (233)
T 1u5t_A 226 PSWITRQ 232 (233)
T ss_dssp GGGGGCC
T ss_pred hhhhhcc
Confidence 9999853
No 3
>3cuq_B Vacuolar protein-sorting-associated protein 36; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_B
Probab=100.00 E-value=2.9e-61 Score=422.21 Aligned_cols=203 Identities=19% Similarity=0.290 Sum_probs=187.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhc-------CHHHHHHHHHHHHHcCCC-cccCCCccccccccchhHHHHH
Q psy6552 28 QENQLEQLSQHLNTFRDKLESFASEYKNEIKK-------DAQFRRHFQEMCASIGVD-PLASRKGFWSLLGMGDFYYELS 99 (254)
Q Consensus 28 ~~~~~~~L~~ql~~fk~~L~~FA~kh~~~I~~-------dp~fr~~f~~mc~~lGVd-Pl~s~kg~w~~lg~gdfy~eLa 99 (254)
..++|+||+++|++|++|+. +|++++.++++ |+ ..+|++||++|||| |+++ +||| +.|+||||||
T Consensus 6 ~~~af~DL~~LM~~Ak~mv~-la~~~~~~~~~~~~~~~~~e--~~~f~~m~~slGvd~Pl~~-~~~~---s~~~f~~ELa 78 (218)
T 3cuq_B 6 ISEAFEDLSKLMIKAKEMVE-LSKSIANKIKDKQGDITEDE--TIRFKSYLLSMGIANPVTR-ETYG---SGTQYHMQLA 78 (218)
T ss_dssp SHHHHHHHHHHHHHHHHHHH-HHHGGGCC----------CC--SHHHHHHHHHHTCCCHHHH-TTSS---CSCHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHH-HHHHHHHHHhccCCCCCchH--HHHHHHHHHHcCCCCcchh-hccC---cccHHHHHHH
Confidence 34599999999999999996 78888766653 33 36899999999999 9996 5888 4689999999
Q ss_pred HHHHHHhhhhhhhcCCceeHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHhhhhCCCeEEEEeCCceEEEEccCCCCCh
Q psy6552 100 VQIVEVCLATNYKNGGLILLDELRTRLVKSRGKSLQHQDITNEDLLAAAKKLKIFGNGFSIIPIGQGQYLVQSIPGELSL 179 (254)
Q Consensus 100 vqive~c~~~r~~nGGii~L~dl~~~~nr~Rg~~~~~~~IS~~Di~rA~~~L~~Lg~g~~l~~~~sg~~vv~s~p~els~ 179 (254)
|||+|||.+++++|||||+|.||||+|||+||. ++|||+||++||++|++||+||+|++|+||++|||++|.+++.
T Consensus 79 ~qi~e~c~~~~~~~GG~I~L~dl~~~~nraRG~----~lVSp~Dl~~A~~~l~~Lg~~~~l~~~~sg~~vvqs~~~~~~~ 154 (218)
T 3cuq_B 79 KQLAGILQVPLEERGGIMSLTEVYCLVNRARGM----ELLSPEDLVNACKMLEALKLPLRLRVFDSGVMVIELQSHKEEE 154 (218)
T ss_dssp HHHHHHHHHHHHHTTSEEEHHHHHHHHHHTCSS----SCCCHHHHHHHHHTTTTTTCSEEEEECTTSBEEEEETTCCGGG
T ss_pred HHHHHHHHHHHHhCCCeEEHHHHHHHHHHHcCC----CCCCHHHHHHHHHHHHHcCCCEEEEEECCCcEEEEcCCCchHH
Confidence 999999999999999999999999999999998 8999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHhhccCCCcccHHHHHHhcCCCHHHHHHHHHHHHHcCcEEEeCCCCCcccceecccccC
Q psy6552 180 DHSLVLQQVASKNEAHISVSVLNNELNWSTERAQHALDFMVQEGYAWIDTQSPQEHLYWFPSLFTE 245 (254)
Q Consensus 180 D~~~il~l~~~~~~g~vt~~~l~~~l~ws~~ra~~~L~~l~~~G~lwvD~q~~~e~~yw~p~lf~~ 245 (254)
|++.|+++++ ..||||+.+|++++||++.||+++|++|+++|++|||++ .++.|||||+|.+
T Consensus 155 ~~~~il~~~~--~~g~vt~~~la~~l~ws~~~a~e~L~~~e~~G~l~~D~~--~eg~~y~pn~f~~ 216 (218)
T 3cuq_B 155 MVASALETVS--EKGSLTSEEFAKLVGMSVLLAKERLLLAEKMGHLCRDDS--VEGLRFYPNLFMT 216 (218)
T ss_dssp GHHHHHHHHH--HTSCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEES--SSCEEEEECGGGC
T ss_pred HHHHHHHHHH--HCCCcCHHHHHHHhCCCHHHHHHHHHHHHHcCCEEEECC--CCceEEehhhccc
Confidence 9999999999 569999999999999999999999999999999999997 6899999999985
No 4
>1w7p_D VPS36P, YLR417W; ESCRT-II complex, endosomal protein sorting, protein transpo; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54
Probab=100.00 E-value=3.2e-49 Score=384.36 Aligned_cols=219 Identities=17% Similarity=0.211 Sum_probs=141.0
Q ss_pred cchhhHHHhccHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh-------cCH--HHHHHHHHHHHH
Q psy6552 3 RRAGVGAIQKQKLEQEKYKDKGTSIQENQLEQLSQHLNTFRDKLESFASEYKNEIK-------KDA--QFRRHFQEMCAS 73 (254)
Q Consensus 3 R~vGi~~i~~~~~~~~~~~~~g~~l~~~~~~~L~~ql~~fk~~L~~FA~kh~~~I~-------~dp--~fr~~f~~mc~~ 73 (254)
+++||+||+|+.+++++.++. +..++|+||+++|++|++|+. +|++++.+++ .|+ +-..+|..++
T Consensus 321 ~~~GI~gler~~e~~~~~~~~---~i~~Af~DL~~LM~~AkemV~-La~~~~~~~~~~~~~~s~~~~~~e~~~~~s~L-- 394 (566)
T 1w7p_D 321 SRIGISSLEKSRENQLLNNDI---LFNNALTDLNKLMSLATSIER-LYKNSNITMKTKTLNLQDESTVNEPKTRRPLL-- 394 (566)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccCcHHHHHHHHHHHHHHHH---HHHHHHHhHHHHHHHHHHHHH-HHHHHHHHHhhcccCCCCCccchhhHhhHhhc--
Confidence 569999999999998888887 455699999999999999996 5666655553 221 1122444444
Q ss_pred cCCCcccCCCccccccc-cchhHHHHHHHHHHHhhhhh----hh-cCCceeHHHHHHHHHHh-c-CCCCCCCCCCHHHHH
Q psy6552 74 IGVDPLASRKGFWSLLG-MGDFYYELSVQIVEVCLATN----YK-NGGLILLDELRTRLVKS-R-GKSLQHQDITNEDLL 145 (254)
Q Consensus 74 lGVdPl~s~kg~w~~lg-~gdfy~eLavqive~c~~~r----~~-nGGii~L~dl~~~~nr~-R-g~~~~~~~IS~~Di~ 145 (254)
|++.. ++| .++|||||||||+|||.+++ ++ |||||+|.||||+|||+ | |. ++|||+||+
T Consensus 395 ----~Vtrd-----~~~s~~~f~~ELA~qI~E~c~~~~~~~l~~~nGGmItL~DL~~~~NRa~R~g~----elISp~Dll 461 (566)
T 1w7p_D 395 ----ILDRE-----KFLNKELFLDEIAREIYEFTLSEFKDLNSDTNYMIITLVDLYAMYNKSMRIGT----GLISPMEMR 461 (566)
T ss_dssp -----CCSS-----CCCCHHHHHHHHHHHHHHHHHHTTCCSSCSCCCCEEEHHHHHHHHHHHTTTTT----CCCCHHHHH
T ss_pred ----ccchh-----hcCChhHHHHHHHHHHHHHHHhhhcccchhcCcCeEEHHHHHHHHHHhccCCC----CccCHHHHH
Confidence 88854 333 47999999999999999999 88 99999999999999999 9 55 799999999
Q ss_pred HHHHHhhhhCCCeE-EEEeCCceEEEEccCCCCChhHHHHHHHhhccCCCcccHHHHHHhcC-------CCHHHHHHHHH
Q psy6552 146 AAAKKLKIFGNGFS-IIPIGQGQYLVQSIPGELSLDHSLVLQQVASKNEAHISVSVLNNELN-------WSTERAQHALD 217 (254)
Q Consensus 146 rA~~~L~~Lg~g~~-l~~~~sg~~vv~s~p~els~D~~~il~l~~~~~~g~vt~~~l~~~l~-------ws~~ra~~~L~ 217 (254)
+||++|++||+||+ |++|+||+.|+ ++|.+ +.|+.+|+++++ ..||||+.+|++++| |++.||+++|+
T Consensus 462 ~A~~~le~Lg~~~~~L~~~~sgvlVv-s~~~~-~~~~~~il~l~~--~~g~vT~~~la~~lg~~~~~~~Ws~~~A~e~L~ 537 (566)
T 1w7p_D 462 EACERFEHLGLNELKLVKVNKRILCV-TSEKF-DVVKEKLVDLIG--DNPGSDLLRLTQILSSNNSKSNWTLGILMEVLQ 537 (566)
T ss_dssp HHHTTGGGGTCTTCEEEECSSSCEEE-ESSCH-HHHHHHHHHHHT--TSTTCCHHHHHHHHSCSSSCCCBCHHHHHHHHH
T ss_pred HHHHHHHHcCCCeEEEEEECCEEEEE-cCCCc-hHHHHHHHHHHH--hcCCcCHHHHHHHhCCccccCcccHHHHHHHHH
Confidence 99999999999999 99999888776 99977 889999999999 579999999999999 99999999999
Q ss_pred HHHHcCcEEEeCCCCCcccceecccccCc
Q psy6552 218 FMVQEGYAWIDTQSPQEHLYWFPSLFTEC 246 (254)
Q Consensus 218 ~l~~~G~lwvD~q~~~e~~yw~p~lf~~~ 246 (254)
+|+++|++|||+|. ++.|||||+|...
T Consensus 538 ~~e~eG~l~rDd~~--~G~~yypNlf~~~ 564 (566)
T 1w7p_D 538 NCVDEGDLLIDKQL--SGIYYYKNSYWPS 564 (566)
T ss_dssp HHHHTTSEEEEEET--TEEEEEECCSSCC
T ss_pred HHHHcCCEEEECCC--CceEEehhhcccc
Confidence 99999999999994 6999999999854
No 5
>1u5t_B Defective in vacuolar protein sorting; VPS36P; ESCRT, endosomal, trafficking, protein complex, transport protein; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54
Probab=100.00 E-value=9e-42 Score=288.05 Aligned_cols=143 Identities=21% Similarity=0.298 Sum_probs=129.9
Q ss_pred chhHHHHHHHHHHHhh---h-hhhhcCC-ceeHHHHHHHHHHh-c-CCCCCCCCCCHHHHHHHHHHhhhhCCC-eEEEEe
Q psy6552 92 GDFYYELSVQIVEVCL---A-TNYKNGG-LILLDELRTRLVKS-R-GKSLQHQDITNEDLLAAAKKLKIFGNG-FSIIPI 163 (254)
Q Consensus 92 gdfy~eLavqive~c~---~-~r~~nGG-ii~L~dl~~~~nr~-R-g~~~~~~~IS~~Di~rA~~~L~~Lg~g-~~l~~~ 163 (254)
.+||+||||||+|+|. + ++++||| ||+|.||||+|||+ | |. ++|||+||++||++|++||+| |+|++|
T Consensus 10 ~~f~~ELa~qi~e~c~~~~~~~~~~~GG~~I~L~dl~~~~nra~R~g~----~lISp~Dl~~A~~~l~~Lg~~~~~l~~~ 85 (169)
T 1u5t_B 10 ELFLDEIAREIYEFTLSEFKDLNSDTNYMIITLVDLYAMYNKSMRIGT----GLISPMEMREACERFEHLGLNELKLVKV 85 (169)
T ss_dssp TTHHHHHHHHHHHHHHTTTTTSSSCCCCCCEETTHHHHHHHHTTTSSS----CCCCHHHHHHHHTTTGGGTCCSCEEEEE
T ss_pred hHHHHHHHHHHHHHHhhcchhhHHhcCceeEEHHHHHHHHHHhhcCCC----CccCHHHHHHHHHHHHhcCCCeEEEEEE
Confidence 5999999999999999 7 9999999 99999999999999 9 45 799999999999999999999 999999
Q ss_pred CCceEEEEccCCCCChhH--HHHHHHhhccCCCc----ccHH-H-HHHhcCCCHHHHHHHHHHHHHcCcEEEeCCCCCcc
Q psy6552 164 GQGQYLVQSIPGELSLDH--SLVLQQVASKNEAH----ISVS-V-LNNELNWSTERAQHALDFMVQEGYAWIDTQSPQEH 235 (254)
Q Consensus 164 ~sg~~vv~s~p~els~D~--~~il~l~~~~~~g~----vt~~-~-l~~~l~ws~~ra~~~L~~l~~~G~lwvD~q~~~e~ 235 (254)
+||++|+.+ .+.|+ +.++++++.. .|+ +|+. + +++++||++.||+++|++++++|++|||+|. ++
T Consensus 86 ~sg~~V~~~----~~~d~~~~~il~~~~~~-~g~d~~~vt~~~~~la~~~~ws~~~a~e~L~~~e~~G~l~~D~~~--~G 158 (169)
T 1u5t_B 86 NKRILCVTS----EKFDVVKEKLVDLIGDN-PGSDLLRLTQILSSNNSKSNWTLGILMEVLQNCVDEGDLLIDKQL--SG 158 (169)
T ss_dssp TTTEEEEES----SCSHHHHHHHHHHHHHS-CSBCHHHHHHHHHTSCTTCCCCHHHHHHHHHHHHHHTSEEEEECS--SC
T ss_pred CCeeEEEeC----CChhHHHHHHHHHHHhc-CCCCcccccHHHHHHHHHhCCCHHHHHHHHHHHHHcCCEEEECCC--Cc
Confidence 988888833 34455 8899999854 589 9999 9 9999999999999999999999999999995 56
Q ss_pred cceecccccC
Q psy6552 236 LYWFPSLFTE 245 (254)
Q Consensus 236 ~yw~p~lf~~ 245 (254)
.+||||+|..
T Consensus 159 ~~y~~N~f~~ 168 (169)
T 1u5t_B 159 IYYYKNSYWP 168 (169)
T ss_dssp EEEEECCSSC
T ss_pred ceEEeeecCc
Confidence 8888999875
No 6
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=96.82 E-value=0.0029 Score=45.97 Aligned_cols=59 Identities=10% Similarity=0.077 Sum_probs=48.5
Q ss_pred HHHHHHHhhcc----CCCcccHHHHHHhcCCCHHHHHHHHHHHHHcCcEEEeCCCCCccccee
Q psy6552 181 HSLVLQQVASK----NEAHISVSVLNNELNWSTERAQHALDFMVQEGYAWIDTQSPQEHLYWF 239 (254)
Q Consensus 181 ~~~il~l~~~~----~~g~vt~~~l~~~l~ws~~ra~~~L~~l~~~G~lwvD~q~~~e~~yw~ 239 (254)
+..||+++... .++.+|+.+|++.+|+|..-++..|..|++.|++-++-...+-..+|+
T Consensus 6 ~~~IL~~I~~~i~~~~g~~psv~EIa~~lgvS~~TVrr~L~~Le~kG~I~R~~ggr~~~~~~~ 68 (77)
T 2jt1_A 6 VTKIISIVQERQNMDDGAPVKTRDIADAAGLSIYQVRLYLEQLHDVGVLEKVNAGKGVPGLWR 68 (77)
T ss_dssp HHHHHHHHHHHHHHHTTSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEESCSSSSCCEEE
T ss_pred HHHHHHHHHHHHhhccCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCcEEecCCCCCcHHHHH
Confidence 56788877632 147899999999999999999999999999999999976444567776
No 7
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=96.57 E-value=0.0063 Score=43.65 Aligned_cols=58 Identities=14% Similarity=0.168 Sum_probs=46.2
Q ss_pred HHHHHHhhccCCCcccHHHHHHhcCCCHHHHHHHHHHHHHcCcEEEeCCCCCcccceecc
Q psy6552 182 SLVLQQVASKNEAHISVSVLNNELNWSTERAQHALDFMVQEGYAWIDTQSPQEHLYWFPS 241 (254)
Q Consensus 182 ~~il~l~~~~~~g~vt~~~l~~~l~ws~~ra~~~L~~l~~~G~lwvD~q~~~e~~yw~p~ 241 (254)
..|+++... .|.+|..+|++.+|+|..-+...|..|++.|++-.+....+.+.||..+
T Consensus 3 ~~Il~~L~~--~~~~s~~eLa~~lgvs~~tv~r~L~~L~~~GlI~~~~~~~gr~~~y~l~ 60 (81)
T 2htj_A 3 NEILEFLNR--HNGGKTAEIAEALAVTDYQARYYLLLLEKAGMVQRSPLRRGMATYWFLK 60 (81)
T ss_dssp HHHHHHHHH--SCCCCHHHHHHHHTSCHHHHHHHHHHHHHHTSEEEECCSSSSSCEEEES
T ss_pred HHHHHHHHH--cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEeccCCCCcEEEEEC
Confidence 456777663 4679999999999999999999999999999998765432455677643
No 8
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=96.46 E-value=0.0087 Score=41.85 Aligned_cols=53 Identities=9% Similarity=0.000 Sum_probs=41.2
Q ss_pred CCCCChhHHHHHHHhhccCCCcccHHHHHHhcCCCHHHHHHHHHHHHHcCcEEE
Q psy6552 174 PGELSLDHSLVLQQVASKNEAHISVSVLNNELNWSTERAQHALDFMVQEGYAWI 227 (254)
Q Consensus 174 p~els~D~~~il~l~~~~~~g~vt~~~l~~~l~ws~~ra~~~L~~l~~~G~lwv 227 (254)
|..+++-...||++.... .+.+|..+|++.+|++..-+...|..|+++|++..
T Consensus 5 ~~~m~~~~~~IL~~L~~~-~~~~s~~eLA~~lglsr~tv~~~l~~L~~~G~I~~ 57 (67)
T 2heo_A 5 LSTGDNLEQKILQVLSDD-GGPVAIFQLVKKCQVPKKTLNQVLYRLKKEDRVSS 57 (67)
T ss_dssp ----CHHHHHHHHHHHHH-CSCEEHHHHHHHHCSCHHHHHHHHHHHHHTTSEEE
T ss_pred cccccHHHHHHHHHHHHc-CCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEec
Confidence 444554355788887643 46899999999999999999999999999999654
No 9
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=96.09 E-value=0.0048 Score=45.14 Aligned_cols=46 Identities=13% Similarity=0.109 Sum_probs=41.2
Q ss_pred HHHHHHHhhccCCCcccHHHHHHhcCCCHH-HHHHHHHHHHHcCcEEEe
Q psy6552 181 HSLVLQQVASKNEAHISVSVLNNELNWSTE-RAQHALDFMVQEGYAWID 228 (254)
Q Consensus 181 ~~~il~l~~~~~~g~vt~~~l~~~l~ws~~-ra~~~L~~l~~~G~lwvD 228 (254)
+..||.+.. ..|..|+.+|++.+|+++. -+..+|..|+++|++..-
T Consensus 13 ~~~IL~~Lk--~~g~~ta~eiA~~Lgit~~~aVr~hL~~Le~eGlV~~~ 59 (79)
T 1xmk_A 13 KEKICDYLF--NVSDSSALNLAKNIGLTKARDINAVLIDMERQGDVYRQ 59 (79)
T ss_dssp HHHHHHHHH--HTCCEEHHHHHHHHCGGGHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHH--HcCCcCHHHHHHHcCCCcHHHHHHHHHHHHHCCCEEec
Confidence 568888888 4588999999999999999 889999999999999854
No 10
>3i71_A Ethanolamine utilization protein EUTK; helix-turn-helix, unknown function; HET: FLC; 2.10A {Escherichia coli}
Probab=96.07 E-value=0.017 Score=39.87 Aligned_cols=42 Identities=14% Similarity=0.269 Sum_probs=35.7
Q ss_pred HHHhhccCCCcccHHHHHHhcCCCHHHHHHHHHHHHHcCcEEEe
Q psy6552 185 LQQVASKNEAHISVSVLNNELNWSTERAQHALDFMVQEGYAWID 228 (254)
Q Consensus 185 l~l~~~~~~g~vt~~~l~~~l~ws~~ra~~~L~~l~~~G~lwvD 228 (254)
..+++ ...+.|+.+++..|||+-+.|+.+|+.|..+|.+---
T Consensus 10 all~s--~~QGMTaGEVAA~f~w~Le~ar~aLeqLf~~G~LRKR 51 (68)
T 3i71_A 10 ALLTS--VRQGMTAGEVAAHFGWPLEKARNALEQLFSAGTLRKR 51 (68)
T ss_dssp HHHHH--CTTCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHH--HhccccHHHHHHHhCCcHHHHHHHHHHHHhcchhhhh
Confidence 34445 3567999999999999999999999999999988654
No 11
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=96.00 E-value=0.0082 Score=43.32 Aligned_cols=59 Identities=12% Similarity=0.143 Sum_probs=45.9
Q ss_pred ChhH-HHHHHHhhccC-CCcccHHHHHHhcCCCHHHHHHHHHHHHHcCcEEEeCCCCCccccee
Q psy6552 178 SLDH-SLVLQQVASKN-EAHISVSVLNNELNWSTERAQHALDFMVQEGYAWIDTQSPQEHLYWF 239 (254)
Q Consensus 178 s~D~-~~il~l~~~~~-~g~vt~~~l~~~l~ws~~ra~~~L~~l~~~G~lwvD~q~~~e~~yw~ 239 (254)
+.|. ..||++...+. +..+|+.+|++.+|.+..-+...|..|+++|++.+-.. .+-||+
T Consensus 12 ~~~~~~~IL~~L~~~~~~~~~t~~eLA~~Lgvs~~tV~~~L~~L~~~G~I~~~g~---~~~~W~ 72 (77)
T 1qgp_A 12 YQDQEQRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYSLAKKGKLQKEAG---TPPLWK 72 (77)
T ss_dssp HHHHHHHHHHHHHHHCSSSCEEHHHHHHHHCCCHHHHHHHHHHHHHHTSEEEECS---SSCEEE
T ss_pred CHHHHHHHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEecCC---CCCceE
Confidence 3343 67888877441 22899999999999999999999999999999988643 235565
No 12
>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B
Probab=95.84 E-value=0.021 Score=40.72 Aligned_cols=63 Identities=17% Similarity=0.281 Sum_probs=51.5
Q ss_pred CCChhHHHHHHHhhccCCCcccHHHHHHhcC----CCHHHHHHHHHHHHHcCcEEEeCCCCCcccceeccc
Q psy6552 176 ELSLDHSLVLQQVASKNEAHISVSVLNNELN----WSTERAQHALDFMVQEGYAWIDTQSPQEHLYWFPSL 242 (254)
Q Consensus 176 els~D~~~il~l~~~~~~g~vt~~~l~~~l~----ws~~ra~~~L~~l~~~G~lwvD~q~~~e~~yw~p~l 242 (254)
.++.-+..|+..+. ..|.+|+.+|++.++ |++.-....|+.|++.|++-+... +...+|.|..
T Consensus 6 ~lt~~e~~vL~~L~--~~~~~t~~ei~~~l~~~~~~s~~Tv~~~l~rL~~kGlv~r~~~--gr~~~y~~~~ 72 (82)
T 1p6r_A 6 QISDAELEVMKVIW--KHSSINTNEVIKELSKTSTWSPKTIQTMLLRLIKKGALNHHKE--GRVFVYTPNI 72 (82)
T ss_dssp CCCHHHHHHHHHHH--TSSSEEHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTSEEEEEE--TTEEEEEESC
T ss_pred CCCHHHHHHHHHHH--cCCCCCHHHHHHHHhhcCCccHHHHHHHHHHHHHCCCeEEEec--CCEEEEEeec
Confidence 36767788888887 357899999999986 999999999999999999999865 3455666654
No 13
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=95.82 E-value=0.02 Score=41.86 Aligned_cols=57 Identities=11% Similarity=0.121 Sum_probs=44.8
Q ss_pred HHHHHHHhhccC-CCcccHHHHHHhcCCCHHHHHHHHHHHHHcCcEEEeCCCCCcccceec
Q psy6552 181 HSLVLQQVASKN-EAHISVSVLNNELNWSTERAQHALDFMVQEGYAWIDTQSPQEHLYWFP 240 (254)
Q Consensus 181 ~~~il~l~~~~~-~g~vt~~~l~~~l~ws~~ra~~~L~~l~~~G~lwvD~q~~~e~~yw~p 240 (254)
+..||++...+. +..+|+.+|++.+|.+..-+..+|..|+++|++.+-.. .+-||+-
T Consensus 12 ~~~IL~~L~~~~pg~~~t~~eLA~~Lgvsr~tV~~~L~~Le~~G~I~~~g~---~~~~W~i 69 (81)
T 1qbj_A 12 EQRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYSLAKKGKLQKEAG---TPPLWKI 69 (81)
T ss_dssp HHHHHHHHHHHCTTCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEESS---SSCEEEE
T ss_pred HHHHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEecCC---CCCeeEE
Confidence 457888887441 12899999999999999999999999999999997543 2355553
No 14
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=95.64 E-value=0.022 Score=41.29 Aligned_cols=45 Identities=16% Similarity=0.054 Sum_probs=40.9
Q ss_pred HHHHHHhhccCCCcccHHHHHHhcCCCHHHHHHHHHHHHHcCcEEEe
Q psy6552 182 SLVLQQVASKNEAHISVSVLNNELNWSTERAQHALDFMVQEGYAWID 228 (254)
Q Consensus 182 ~~il~l~~~~~~g~vt~~~l~~~l~ws~~ra~~~L~~l~~~G~lwvD 228 (254)
..|+++++ ..|.+|+++|++.|+.|+.-.+.-|+.|++.|++-+-
T Consensus 5 ~~Il~~L~--~~g~vsv~eLa~~l~VS~~TIRrdL~~Le~~G~l~R~ 49 (78)
T 1xn7_A 5 IQVRDLLA--LRGRMEAAQISQTLNTPQPMINAMLQQLESMGKAVRI 49 (78)
T ss_dssp HHHHHHHH--HSCSBCHHHHHHHTTCCHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHH--HcCCCcHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEe
Confidence 45788887 4699999999999999999999999999999999886
No 15
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=95.28 E-value=0.024 Score=42.07 Aligned_cols=45 Identities=16% Similarity=0.034 Sum_probs=40.7
Q ss_pred HHHHHHhhccCCCcccHHHHHHhcCCCHHHHHHHHHHHHHcCcEEEe
Q psy6552 182 SLVLQQVASKNEAHISVSVLNNELNWSTERAQHALDFMVQEGYAWID 228 (254)
Q Consensus 182 ~~il~l~~~~~~g~vt~~~l~~~l~ws~~ra~~~L~~l~~~G~lwvD 228 (254)
..|+++++ ..|.+|+++|++.|+.|..-.+.-|+.|++.|++-+-
T Consensus 5 ~~Il~~L~--~~g~vsv~eLA~~l~VS~~TIRrDL~~Le~~G~l~R~ 49 (87)
T 2k02_A 5 MEVRDMLA--LQGRMEAKQLSARLQTPQPLIDAMLERMEAMGKVVRI 49 (87)
T ss_dssp HHHHHHHH--HSCSEEHHHHHHHTTCCHHHHHHHHHHHHTTCCSEEE
T ss_pred HHHHHHHH--HcCCCcHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 35778887 4699999999999999999999999999999999886
No 16
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=95.25 E-value=0.072 Score=40.13 Aligned_cols=77 Identities=17% Similarity=0.148 Sum_probs=58.9
Q ss_pred CCCCHHHHHHHHHHhhhhCCCeEEEEeCCceEEEEccCCCCChhHHHHHHHhhccCCCcccHHHHHHhcCCCHHHHHHHH
Q psy6552 137 QDITNEDLLAAAKKLKIFGNGFSIIPIGQGQYLVQSIPGELSLDHSLVLQQVASKNEAHISVSVLNNELNWSTERAQHAL 216 (254)
Q Consensus 137 ~~IS~~Di~rA~~~L~~Lg~g~~l~~~~sg~~vv~s~p~els~D~~~il~l~~~~~~g~vt~~~l~~~l~ws~~ra~~~L 216 (254)
..++.+++.++.+.++.|+.+. ...|+.+.. .|.+|+.+|++.+|+++.-+...|
T Consensus 5 ~~~~~~~~~~~~~~~~al~~~~----------------------r~~IL~~L~---~~~~s~~eLa~~lgis~stvs~~L 59 (108)
T 2kko_A 5 SDRKAALLDQVARVGKALANGR----------------------RLQILDLLA---QGERAVEAIATATGMNLTTASANL 59 (108)
T ss_dssp CCTHHHHHHHHHHHHHHHTTST----------------------THHHHHHHT---TCCEEHHHHHHHHTCCHHHHHHHH
T ss_pred CccChhhHHHHHHHHHHhCCHH----------------------HHHHHHHHH---cCCcCHHHHHHHHCcCHHHHHHHH
Confidence 3467778888888888887222 234666655 267899999999999999999999
Q ss_pred HHHHHcCcEEEeCCCCCcccceec
Q psy6552 217 DFMVQEGYAWIDTQSPQEHLYWFP 240 (254)
Q Consensus 217 ~~l~~~G~lwvD~q~~~e~~yw~p 240 (254)
..|++.|++-+... +...||..
T Consensus 60 ~~L~~~GlV~~~~~--gr~~~y~l 81 (108)
T 2kko_A 60 QALKSGGLVEARRE--GTRQYYRI 81 (108)
T ss_dssp HHHHHHTSEEEEEE--TTEEEEEE
T ss_pred HHHHHCCCeEEEEe--CCEEEEEE
Confidence 99999999988754 34455543
No 17
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=95.25 E-value=0.062 Score=38.87 Aligned_cols=55 Identities=16% Similarity=0.164 Sum_probs=44.7
Q ss_pred HHHHHHHhhccCCCcccHHHHHHhcCCCHHHHHHHHHHHHHcCcEEEeCCCCCccccee
Q psy6552 181 HSLVLQQVASKNEAHISVSVLNNELNWSTERAQHALDFMVQEGYAWIDTQSPQEHLYWF 239 (254)
Q Consensus 181 ~~~il~l~~~~~~g~vt~~~l~~~l~ws~~ra~~~L~~l~~~G~lwvD~q~~~e~~yw~ 239 (254)
+..|+.+.. ..+.+|..+|++.+|+++.-+...|..|++.|++-+... +...||.
T Consensus 26 ~~~il~~l~--~~~~~s~~ela~~l~is~~tvs~~l~~L~~~glv~~~~~--~r~~~y~ 80 (99)
T 3cuo_A 26 RLLILCMLS--GSPGTSAGELTRITGLSASATSQHLARMRDEGLIDSQRD--AQRILYS 80 (99)
T ss_dssp HHHHHHHHT--TCCSEEHHHHHHHHCCCHHHHHHHHHHHHHTTSEEEEEC--SSCEEEE
T ss_pred HHHHHHHHH--hCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEec--CCEEEEE
Confidence 556777666 456899999999999999999999999999999988764 3344443
No 18
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=95.22 E-value=0.065 Score=39.20 Aligned_cols=54 Identities=19% Similarity=0.292 Sum_probs=44.5
Q ss_pred HHHHHHhhccCCCcccHHHHHHhcCCCHHHHHHHHHHHHHcCcEEEeCCCCCcccceec
Q psy6552 182 SLVLQQVASKNEAHISVSVLNNELNWSTERAQHALDFMVQEGYAWIDTQSPQEHLYWFP 240 (254)
Q Consensus 182 ~~il~l~~~~~~g~vt~~~l~~~l~ws~~ra~~~L~~l~~~G~lwvD~q~~~e~~yw~p 240 (254)
..|+.+.. . |.+|+.+|++.+|++..-+..+|..|++.|++-+... +...||..
T Consensus 26 ~~Il~~L~--~-~~~~~~ela~~l~is~~tvs~~L~~L~~~Glv~~~~~--g~~~~y~l 79 (98)
T 3jth_A 26 LQILCMLH--N-QELSVGELCAKLQLSQSALSQHLAWLRRDGLVTTRKE--AQTVYYTL 79 (98)
T ss_dssp HHHHHHTT--T-SCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECC--TTCCEEEE
T ss_pred HHHHHHHh--c-CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEe--CCEEEEEE
Confidence 45666666 3 7899999999999999999999999999999998876 44555543
No 19
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=94.85 E-value=0.12 Score=39.67 Aligned_cols=53 Identities=17% Similarity=0.103 Sum_probs=45.7
Q ss_pred CChhHHHHHHHh-hccCCCcccHHHHHHhcCCCHHHHHHHHHHHHHcCcEEEeCCC
Q psy6552 177 LSLDHSLVLQQV-ASKNEAHISVSVLNNELNWSTERAQHALDFMVQEGYAWIDTQS 231 (254)
Q Consensus 177 ls~D~~~il~l~-~~~~~g~vt~~~l~~~l~ws~~ra~~~L~~l~~~G~lwvD~q~ 231 (254)
++..+-.||... . ..|.+|+.+|++.+|+++.-+...|..|++.|++-+....
T Consensus 35 l~~~~~~iL~~l~~--~~~~~t~~~la~~l~~s~~~vs~~l~~L~~~glv~r~~~~ 88 (146)
T 2fbh_A 35 LSQARWLVLLHLAR--HRDSPTQRELAQSVGVEGPTLARLLDGLESQGLVRRLAVA 88 (146)
T ss_dssp CTTTHHHHHHHHHH--CSSCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECCB
T ss_pred CCHHHHHHHHHHHH--cCCCCCHHHHHHHhCCChhhHHHHHHHHHHCCCeeecCCC
Confidence 565677787777 5 3678999999999999999999999999999999997653
No 20
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=94.74 E-value=0.062 Score=39.47 Aligned_cols=54 Identities=15% Similarity=0.257 Sum_probs=44.2
Q ss_pred HHHHHHhhccCCCcccHHHHHHhcCCCHHHHHHHHHHHHHcCcEEEeCCCCCcccceecc
Q psy6552 182 SLVLQQVASKNEAHISVSVLNNELNWSTERAQHALDFMVQEGYAWIDTQSPQEHLYWFPS 241 (254)
Q Consensus 182 ~~il~l~~~~~~g~vt~~~l~~~l~ws~~ra~~~L~~l~~~G~lwvD~q~~~e~~yw~p~ 241 (254)
..||++.. ..| +|+.+|++.+|.|+.-+...|..|+++|++..=.. .+-.|+-+
T Consensus 20 ~~IL~lL~--~~g-~sa~eLAk~LgiSk~aVr~~L~~Le~eG~I~~~~~---~PP~W~~~ 73 (82)
T 1oyi_A 20 CEAIKTIG--IEG-ATAAQLTRQLNMEKREVNKALYDLQRSAMVYSSDD---IPPRWFMT 73 (82)
T ss_dssp HHHHHHHS--SST-EEHHHHHHHSSSCHHHHHHHHHHHHHHTSSEECSS---SSCEEESC
T ss_pred HHHHHHHH--HcC-CCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEeCCC---CCCcceec
Confidence 46678887 356 99999999999999999999999999999988543 45556543
No 21
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=94.74 E-value=0.094 Score=37.22 Aligned_cols=54 Identities=15% Similarity=0.180 Sum_probs=45.5
Q ss_pred CChhHHHHHHHhhccCC-CcccHHHHHHhc-----CCCHHHHHHHHHHHHHcCcEEEeCCC
Q psy6552 177 LSLDHSLVLQQVASKNE-AHISVSVLNNEL-----NWSTERAQHALDFMVQEGYAWIDTQS 231 (254)
Q Consensus 177 ls~D~~~il~l~~~~~~-g~vt~~~l~~~l-----~ws~~ra~~~L~~l~~~G~lwvD~q~ 231 (254)
++.-...|+++.... . +.+|+.+|++.+ +++..=+...|+.|++.|++-+....
T Consensus 15 ~t~~r~~IL~~l~~~-~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Glv~~~~~~ 74 (83)
T 2fu4_A 15 VTLPRLKILEVLQEP-DNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIVTRHNFE 74 (83)
T ss_dssp CCHHHHHHHHHHTSG-GGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEEEEECG
T ss_pred cCHHHHHHHHHHHhC-CCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCeEEEeeC
Confidence 344567788888743 4 789999999999 99999999999999999999988763
No 22
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=94.71 E-value=0.07 Score=41.12 Aligned_cols=54 Identities=22% Similarity=0.258 Sum_probs=45.3
Q ss_pred CCCCChhHHHHHHHhhccCCCcccHHHHHHhcCCCHHHHHHHHHHHHHcCcEEEeCC
Q psy6552 174 PGELSLDHSLVLQQVASKNEAHISVSVLNNELNWSTERAQHALDFMVQEGYAWIDTQ 230 (254)
Q Consensus 174 p~els~D~~~il~l~~~~~~g~vt~~~l~~~l~ws~~ra~~~L~~l~~~G~lwvD~q 230 (254)
+..++.-+-.||.... ..| +|+.+|++.+|+++.-+...|..|++.|++-+-..
T Consensus 33 ~~~lt~~~~~iL~~l~--~~~-~t~~eLa~~l~~s~~tvs~~l~~L~~~Glv~r~~~ 86 (146)
T 3tgn_A 33 EVALTNTQEHILMLLS--EES-LTNSELARRLNVSQAAVTKAIKSLVKEGMLETSKD 86 (146)
T ss_dssp SSCCCHHHHHHHHHHT--TCC-CCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEC---
T ss_pred ccCCCHHHHHHHHHHH--hCC-CCHHHHHHHHCCCHHHHHHHHHHHHHCCCeEeccC
Confidence 3447878888888887 457 99999999999999999999999999999987554
No 23
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=94.69 E-value=0.098 Score=40.00 Aligned_cols=55 Identities=5% Similarity=0.108 Sum_probs=46.1
Q ss_pred CChhHHHHHHHhhccCCCcccHHHHHHhcCCCHHHHHHHHHHHHHcCcEEEeCCC
Q psy6552 177 LSLDHSLVLQQVASKNEAHISVSVLNNELNWSTERAQHALDFMVQEGYAWIDTQS 231 (254)
Q Consensus 177 ls~D~~~il~l~~~~~~g~vt~~~l~~~l~ws~~ra~~~L~~l~~~G~lwvD~q~ 231 (254)
++..+-.||......+.+.+|+.+|++.+++++.-+...|+.|++.|++-+...+
T Consensus 29 lt~~~~~vL~~l~~~~~~~~t~~ela~~l~~~~~tvs~~l~~Le~~Gli~r~~~~ 83 (139)
T 3eco_A 29 ITNEQGHTLGYLYAHQQDGLTQNDIAKALQRTGPTVSNLLRNLERKKLIYRYVDA 83 (139)
T ss_dssp CCHHHHHHHHHHHHSTTTCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECC
T ss_pred CCHHHHHHHHHHHhcCCCCcCHHHHHHHhCCCcccHHHHHHHHHHCCCEeecCCC
Confidence 6767777877666432258999999999999999999999999999999987654
No 24
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=94.66 E-value=0.082 Score=40.83 Aligned_cols=55 Identities=11% Similarity=0.122 Sum_probs=46.3
Q ss_pred CCCChhHHHHHHHhhccCCCcccHHHHHHhcCCCHHHHHHHHHHHHHcCcEEEeCCC
Q psy6552 175 GELSLDHSLVLQQVASKNEAHISVSVLNNELNWSTERAQHALDFMVQEGYAWIDTQS 231 (254)
Q Consensus 175 ~els~D~~~il~l~~~~~~g~vt~~~l~~~l~ws~~ra~~~L~~l~~~G~lwvD~q~ 231 (254)
..++..+-.||..... .|.+|+.+|++.+++++.-+...|+.|++.|++-+...+
T Consensus 27 ~~lt~~q~~iL~~l~~--~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~~~ 81 (145)
T 3g3z_A 27 QDLNYNLFAVLYTLAT--EGSRTQKHIGEKWSLPKQTVSGVCKTLAGQGLIEWQEGE 81 (145)
T ss_dssp TTCCHHHHHHHHHHHH--HCSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECCCS
T ss_pred cCCCHHHHHHHHHHHH--CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeeccCC
Confidence 3477778888877763 356999999999999999999999999999999986543
No 25
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=94.64 E-value=0.18 Score=37.60 Aligned_cols=78 Identities=15% Similarity=0.261 Sum_probs=57.5
Q ss_pred CCCCHHHHHHHHHHhhhhCCCeEEEEeCCceEEEEccCCCCChhHHHHHHHhhccCCCcccHHHHHHhcCCCHHHHHHHH
Q psy6552 137 QDITNEDLLAAAKKLKIFGNGFSIIPIGQGQYLVQSIPGELSLDHSLVLQQVASKNEAHISVSVLNNELNWSTERAQHAL 216 (254)
Q Consensus 137 ~~IS~~Di~rA~~~L~~Lg~g~~l~~~~sg~~vv~s~p~els~D~~~il~l~~~~~~g~vt~~~l~~~l~ws~~ra~~~L 216 (254)
..++++++......++.|+.+ -...|+.+.. .|..|+.+|++.+|++..-...+|
T Consensus 6 ~~~~~~~~~~~~~~~~~l~~~----------------------~r~~IL~~L~---~~~~~~~ela~~l~is~stvs~~L 60 (106)
T 1r1u_A 6 SEINTDTLERVTEIFKALGDY----------------------NRIRIMELLS---VSEASVGHISHQLNLSQSNVSHQL 60 (106)
T ss_dssp ---CHHHHHHHHHHHHHTCSH----------------------HHHHHHHHHH---HCCBCHHHHHHHHTCCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCCH----------------------HHHHHHHHHH---hCCCCHHHHHHHHCcCHHHHHHHH
Confidence 467888888888888877632 2345555555 256899999999999999999999
Q ss_pred HHHHHcCcEEEeCCCCCcccceecc
Q psy6552 217 DFMVQEGYAWIDTQSPQEHLYWFPS 241 (254)
Q Consensus 217 ~~l~~~G~lwvD~q~~~e~~yw~p~ 241 (254)
..|++.|++-+... +...||..+
T Consensus 61 ~~L~~~Glv~~~~~--gr~~~y~l~ 83 (106)
T 1r1u_A 61 KLLKSVHLVKAKRQ--GQSMIYSLD 83 (106)
T ss_dssp HHHHHTTSEEEEEE--TTEEEEEES
T ss_pred HHHHHCCCeEEEEe--CCEEEEEEC
Confidence 99999999988764 344555543
No 26
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=94.58 E-value=0.073 Score=41.11 Aligned_cols=53 Identities=13% Similarity=0.236 Sum_probs=45.7
Q ss_pred CChhHHHHHHHhhccCCCcccHHHHHHhcCCCHHHHHHHHHHHHHcCcEEEeCCC
Q psy6552 177 LSLDHSLVLQQVASKNEAHISVSVLNNELNWSTERAQHALDFMVQEGYAWIDTQS 231 (254)
Q Consensus 177 ls~D~~~il~l~~~~~~g~vt~~~l~~~l~ws~~ra~~~L~~l~~~G~lwvD~q~ 231 (254)
++.-|-.||.... ..|.+|+.+|++.+++++.-+...|+.|++.|++-+...+
T Consensus 34 lt~~q~~vL~~l~--~~~~~t~~eLa~~l~~~~~tvs~~l~~L~~~Glv~r~~~~ 86 (140)
T 3hsr_A 34 LTYTGYIVLMAIE--NDEKLNIKKLGERVFLDSGTLTPLLKKLEKKDYVVRTREE 86 (140)
T ss_dssp CCHHHHHHHHHSC--TTCEEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEC--
T ss_pred CCHHHHHHHHHHH--HcCCcCHHHHHHHHCCChhhHHHHHHHHHHCCCeEecCCC
Confidence 6767888888776 3588999999999999999999999999999999998654
No 27
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=94.58 E-value=0.15 Score=39.01 Aligned_cols=54 Identities=15% Similarity=0.115 Sum_probs=44.0
Q ss_pred CChhHHHHHHHhhccCCCcccHHHHHHhcCCCHHHHHHHHHHHHHcCcEEEeCCC
Q psy6552 177 LSLDHSLVLQQVASKNEAHISVSVLNNELNWSTERAQHALDFMVQEGYAWIDTQS 231 (254)
Q Consensus 177 ls~D~~~il~l~~~~~~g~vt~~~l~~~l~ws~~ra~~~L~~l~~~G~lwvD~q~ 231 (254)
++.-+..++.+.... .|.+|+.+|++.+|+++.-+...|..|++.|++-+....
T Consensus 24 l~~~~~~il~~L~~~-~~~~t~~ela~~l~~~~stvs~~l~~L~~~G~v~r~~~~ 77 (152)
T 1ku9_A 24 LNKSVGAVYAILYLS-DKPLTISDIMEELKISKGNVSMSLKKLEELGFVRKVWIK 77 (152)
T ss_dssp CCHHHHHHHHHHHHC-SSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECCT
T ss_pred CChhHHHHHHHHHHc-CCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEecC
Confidence 455566676665322 467999999999999999999999999999999998654
No 28
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=94.52 E-value=0.084 Score=40.67 Aligned_cols=54 Identities=11% Similarity=0.140 Sum_probs=45.5
Q ss_pred CCChhHHHHHHHhhccCCCcccHHHHHHhcCCCHHHHHHHHHHHHHcCcEEEeCCC
Q psy6552 176 ELSLDHSLVLQQVASKNEAHISVSVLNNELNWSTERAQHALDFMVQEGYAWIDTQS 231 (254)
Q Consensus 176 els~D~~~il~l~~~~~~g~vt~~~l~~~l~ws~~ra~~~L~~l~~~G~lwvD~q~ 231 (254)
.++..+-.||..... .|.+|+.+|++.+++++.-+...|+.|++.|++-+...+
T Consensus 34 ~lt~~~~~iL~~l~~--~~~~t~~eLa~~l~~~~~~vs~~l~~L~~~Glv~r~~~~ 87 (143)
T 3oop_A 34 DVTPEQWSVLEGIEA--NEPISQKEIALWTKKDTPTVNRIVDVLLRKELIVREIST 87 (143)
T ss_dssp SSCHHHHHHHHHHHH--HSSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEC--
T ss_pred CCCHHHHHHHHHHHH--cCCcCHHHHHHHHCCCHhhHHHHHHHHHHCCCeeccCCC
Confidence 367778888877763 378999999999999999999999999999999987554
No 29
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=94.31 E-value=0.1 Score=40.25 Aligned_cols=52 Identities=12% Similarity=0.147 Sum_probs=43.0
Q ss_pred CChhHHHHHHHhhccCCCc-ccHHHHHHhcCCCHHHHHHHHHHHHHcCcEEEeC
Q psy6552 177 LSLDHSLVLQQVASKNEAH-ISVSVLNNELNWSTERAQHALDFMVQEGYAWIDT 229 (254)
Q Consensus 177 ls~D~~~il~l~~~~~~g~-vt~~~l~~~l~ws~~ra~~~L~~l~~~G~lwvD~ 229 (254)
++.-+..|+...... .+. +|+.+|++.+++++.-+...|+.|++.|++-+..
T Consensus 24 Lt~~e~~il~~L~~~-~~~~~t~~eLa~~l~~s~sTV~r~L~~L~~~GlV~r~~ 76 (123)
T 3r0a_A 24 LTKADLNVMKSFLNE-PDRWIDTDALSKSLKLDVSTVQRSVKKLHEKEILQRSQ 76 (123)
T ss_dssp CCHHHHHHHHHHHHS-TTCCEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCHHHHHHHHHHHHC-CCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEeeC
Confidence 565566777665533 344 9999999999999999999999999999999864
No 30
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=94.30 E-value=0.12 Score=39.35 Aligned_cols=53 Identities=19% Similarity=0.147 Sum_probs=45.1
Q ss_pred CChhHHHHHHHhhccCCCcccHHHHHHhcCCCHHHHHHHHHHHHHcCcEEEeCCC
Q psy6552 177 LSLDHSLVLQQVASKNEAHISVSVLNNELNWSTERAQHALDFMVQEGYAWIDTQS 231 (254)
Q Consensus 177 ls~D~~~il~l~~~~~~g~vt~~~l~~~l~ws~~ra~~~L~~l~~~G~lwvD~q~ 231 (254)
++..+-.++..... .|.+|+.+|++.+++++.-+...|..|++.|++-+....
T Consensus 32 lt~~~~~iL~~l~~--~~~~~~~~la~~l~~~~~tvs~~l~~L~~~gli~r~~~~ 84 (138)
T 1jgs_A 32 ITAAQFKVLCSIRC--AACITPVELKKVLSVDLGALTRMLDRLVCKGWVERLPNP 84 (138)
T ss_dssp SCHHHHHHHHHHHH--HSSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECT
T ss_pred CCHHHHHHHHHHHh--cCCCCHHHHHHHHCCChHHHHHHHHHHHHCCCEEecCCc
Confidence 67677777777663 467999999999999999999999999999999986543
No 31
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=94.24 E-value=0.15 Score=39.43 Aligned_cols=53 Identities=11% Similarity=0.152 Sum_probs=45.5
Q ss_pred CChhHHHHHHHhhccCCCcccHHHHHHhcCCCHHHHHHHHHHHHHcCcEEEeCCC
Q psy6552 177 LSLDHSLVLQQVASKNEAHISVSVLNNELNWSTERAQHALDFMVQEGYAWIDTQS 231 (254)
Q Consensus 177 ls~D~~~il~l~~~~~~g~vt~~~l~~~l~ws~~ra~~~L~~l~~~G~lwvD~q~ 231 (254)
++..+-.||..... .|.+|+.+|++.+|+++.-+...|..|++.|++-+....
T Consensus 38 lt~~~~~iL~~l~~--~~~~t~~ela~~l~~~~~~vs~~l~~Le~~Glv~r~~~~ 90 (152)
T 3bj6_A 38 VTVGQRAILEGLSL--TPGATAPQLGAALQMKRQYISRILQEVQRAGLIERRTNP 90 (152)
T ss_dssp CCHHHHHHHHHHHH--STTEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECCS
T ss_pred CCHHHHHHHHHHHh--CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCeeecCCc
Confidence 56667777777663 468999999999999999999999999999999997654
No 32
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=94.15 E-value=0.12 Score=39.42 Aligned_cols=53 Identities=19% Similarity=0.302 Sum_probs=45.7
Q ss_pred CChhHHHHHHHhhccCCCcccHHHHHHhcCCCHHHHHHHHHHHHHcCcEEEeCCC
Q psy6552 177 LSLDHSLVLQQVASKNEAHISVSVLNNELNWSTERAQHALDFMVQEGYAWIDTQS 231 (254)
Q Consensus 177 ls~D~~~il~l~~~~~~g~vt~~~l~~~l~ws~~ra~~~L~~l~~~G~lwvD~q~ 231 (254)
++..+-.++..... .|.+|+.+|++.+++++.-+...|..|++.|++-+....
T Consensus 29 l~~~~~~iL~~l~~--~~~~~~~ela~~l~is~~~vs~~l~~L~~~gli~~~~~~ 81 (142)
T 3bdd_A 29 ISLTRYSILQTLLK--DAPLHQLALQERLQIDRAAVTRHLKLLEESGYIIRKRNP 81 (142)
T ss_dssp SCHHHHHHHHHHHH--HCSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECS
T ss_pred CCHHHHHHHHHHHh--CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEecCCC
Confidence 66677778777763 367999999999999999999999999999999987654
No 33
>2k4b_A Transcriptional regulator; DNA binding protein, winged helix; NMR {Lactococcus lactis subsp}
Probab=94.14 E-value=0.046 Score=41.23 Aligned_cols=62 Identities=15% Similarity=0.243 Sum_probs=50.1
Q ss_pred CCChhHHHHHHHhhccCCCcccHHHHHHhcC----CCHHHHHHHHHHHHHcCcEEEeCCCCCcccceecc
Q psy6552 176 ELSLDHSLVLQQVASKNEAHISVSVLNNELN----WSTERAQHALDFMVQEGYAWIDTQSPQEHLYWFPS 241 (254)
Q Consensus 176 els~D~~~il~l~~~~~~g~vt~~~l~~~l~----ws~~ra~~~L~~l~~~G~lwvD~q~~~e~~yw~p~ 241 (254)
.++.-+..|+..+-. .|.+|+.+|++.++ |++.-....|+.|++.|++-+... +....|+|.
T Consensus 32 ~LT~~e~~VL~~L~~--~~~~t~~eL~~~l~~~~~~s~sTVt~~L~rLe~KGlV~R~~~--gR~~~Y~p~ 97 (99)
T 2k4b_A 32 NVSNAELIVMRVIWS--LGEARVDEIYAQIPQELEWSLATVKTLLGRLVKKEMLSTEKE--GRKFVYRPL 97 (99)
T ss_dssp CCCCSCSHHHHHHHH--HSCEEHHHHHHTCCGGGCCCHHHHHHHHHHHHHTTSCEEEEE--TTEEEEECC
T ss_pred CCCHHHHHHHHHHHh--CCCCCHHHHHHHHhcccCCCHhhHHHHHHHHHHCCCEEEEeC--CCEEEEEEe
Confidence 466667778887763 46899999999985 899999999999999999999865 455666663
No 34
>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus}
Probab=94.07 E-value=0.18 Score=34.55 Aligned_cols=46 Identities=7% Similarity=0.194 Sum_probs=40.8
Q ss_pred HHHHHHhhccCCCcccHHHHHHhcCCCHHHHHHHHHHHHHcCcEEEe
Q psy6552 182 SLVLQQVASKNEAHISVSVLNNELNWSTERAQHALDFMVQEGYAWID 228 (254)
Q Consensus 182 ~~il~l~~~~~~g~vt~~~l~~~l~ws~~ra~~~L~~l~~~G~lwvD 228 (254)
..+|+.+..+ +|++.++..+.++|.+++-...+|..|++.|++-+.
T Consensus 13 ~~lL~yIr~s-GGildI~~~a~kygV~kdeV~~~LrrLe~KGLI~le 58 (59)
T 2xvc_A 13 RELLDYIVNN-GGFLDIEHFSKVYGVEKQEVVKLLEALKNKGLIAVE 58 (59)
T ss_dssp HHHHHHHHHT-TSEEEHHHHHHHHCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHc-CCEEeHHHHHHHhCCCHHHHHHHHHHHHHCCCeecc
Confidence 4567777765 899999999999999999999999999999998663
No 35
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=94.06 E-value=0.13 Score=39.83 Aligned_cols=54 Identities=17% Similarity=0.214 Sum_probs=46.0
Q ss_pred CCChhHHHHHHHhhccCCCcccHHHHHHhcCCCHHHHHHHHHHHHHcCcEEEeCCC
Q psy6552 176 ELSLDHSLVLQQVASKNEAHISVSVLNNELNWSTERAQHALDFMVQEGYAWIDTQS 231 (254)
Q Consensus 176 els~D~~~il~l~~~~~~g~vt~~~l~~~l~ws~~ra~~~L~~l~~~G~lwvD~q~ 231 (254)
.++..+-.||..... .|.+|+.+|++.+++++.-+...|..|++.|++-+....
T Consensus 39 ~l~~~~~~iL~~l~~--~~~~t~~ela~~l~~~~~tvs~~l~~Le~~Glv~r~~~~ 92 (150)
T 2rdp_A 39 PITPPQFVALQWLLE--EGDLTVGELSNKMYLACSTTTDLVDRMERNGLVARVRDE 92 (150)
T ss_dssp SSCHHHHHHHHHHHH--HCSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECC
T ss_pred CCCHHHHHHHHHHHH--cCCCCHHHHHHHHCCCchhHHHHHHHHHHCCCeeecCCC
Confidence 367678788777663 368999999999999999999999999999999986543
No 36
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=94.03 E-value=0.089 Score=40.02 Aligned_cols=52 Identities=13% Similarity=0.141 Sum_probs=45.2
Q ss_pred CChhHHHHHHHhhccCCCcccHHHHHHhcCCCHHHHHHHHHHHHHcCcEEEeCC
Q psy6552 177 LSLDHSLVLQQVASKNEAHISVSVLNNELNWSTERAQHALDFMVQEGYAWIDTQ 230 (254)
Q Consensus 177 ls~D~~~il~l~~~~~~g~vt~~~l~~~l~ws~~ra~~~L~~l~~~G~lwvD~q 230 (254)
++..+-.++..... .|.+|+.+|++.+|+++.-+...|..|++.|++-+...
T Consensus 27 l~~~~~~iL~~l~~--~~~~~~~ela~~l~~s~~tvs~~l~~L~~~glv~~~~~ 78 (138)
T 3bpv_A 27 LTDAQVACLLRIHR--EPGIKQDELATFFHVDKGTIARTLRRLEESGFIEREQD 78 (138)
T ss_dssp CCHHHHHHHHHHHH--STTCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred CCHHHHHHHHHHHH--cCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeecC
Confidence 66677778777763 47899999999999999999999999999999998654
No 37
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=94.02 E-value=0.14 Score=39.79 Aligned_cols=53 Identities=17% Similarity=0.139 Sum_probs=44.5
Q ss_pred CChhHHHHHHHhhccCCCcccHHHHHHhcCCCHHHHHHHHHHHHHcCcEEEeCCC
Q psy6552 177 LSLDHSLVLQQVASKNEAHISVSVLNNELNWSTERAQHALDFMVQEGYAWIDTQS 231 (254)
Q Consensus 177 ls~D~~~il~l~~~~~~g~vt~~~l~~~l~ws~~ra~~~L~~l~~~G~lwvD~q~ 231 (254)
++..+-.||..... .|.+|+.+|++.+++++.-+...|..|++.|++-+....
T Consensus 45 l~~~~~~iL~~l~~--~~~~t~~ela~~l~~s~~tvs~~l~~Le~~glv~r~~~~ 97 (153)
T 2pex_A 45 LTYPQYLVMLVLWE--TDERSVSEIGERLYLDSATLTPLLKRLQAAGLVTRTRAA 97 (153)
T ss_dssp CCHHHHHHHHHHHH--SCSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEC--
T ss_pred CCHHHHHHHHHHHh--CCCcCHHHHHHHhCCCcccHHHHHHHHHHCCCEeecCCc
Confidence 66667777777663 467999999999999999999999999999999997543
No 38
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=94.00 E-value=0.13 Score=39.50 Aligned_cols=53 Identities=15% Similarity=0.249 Sum_probs=45.0
Q ss_pred CChhHHHHHHHhhccCCCcccHHHHHHhcCCCHHHHHHHHHHHHHcCcEEEeCCC
Q psy6552 177 LSLDHSLVLQQVASKNEAHISVSVLNNELNWSTERAQHALDFMVQEGYAWIDTQS 231 (254)
Q Consensus 177 ls~D~~~il~l~~~~~~g~vt~~~l~~~l~ws~~ra~~~L~~l~~~G~lwvD~q~ 231 (254)
++..+-.++..... .|.+|+.+|++.+++++.-+...|..|++.|++-+...+
T Consensus 27 lt~~~~~iL~~l~~--~~~~t~~~la~~l~~s~~~vs~~l~~Le~~gli~r~~~~ 79 (144)
T 1lj9_A 27 LTRGQYLYLVRVCE--NPGIIQEKIAELIKVDRTTAARAIKRLEEQGFIYRQEDA 79 (144)
T ss_dssp CTTTHHHHHHHHHH--STTEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECS
T ss_pred CCHHHHHHHHHHHH--CcCcCHHHHHHHHCCCHhHHHHHHHHHHHCCCEEeecCC
Confidence 56567777776663 478999999999999999999999999999999987543
No 39
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=93.98 E-value=0.19 Score=36.65 Aligned_cols=53 Identities=25% Similarity=0.307 Sum_probs=46.0
Q ss_pred CCChhHHHHHHHhhccCCCcccHHHH----HHhcCCCHHHHHHHHHHHHHcCcEEEeCC
Q psy6552 176 ELSLDHSLVLQQVASKNEAHISVSVL----NNELNWSTERAQHALDFMVQEGYAWIDTQ 230 (254)
Q Consensus 176 els~D~~~il~l~~~~~~g~vt~~~l----~~~l~ws~~ra~~~L~~l~~~G~lwvD~q 230 (254)
.++..|-.||.... ..|.+|..+| ++.+++++.-+...|+.|++.|++.+...
T Consensus 5 ~lt~~q~~iL~~l~--~~~~~~~~el~~~la~~l~is~~tvs~~l~~Le~~gli~r~~~ 61 (99)
T 1tbx_A 5 PFFYPEAIVLAYLY--DNEGIATYDLYKKVNAEFPMSTATFYDAKKFLIQEGFVKERQE 61 (99)
T ss_dssp SSBCHHHHHHHHHT--TCTTCBHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred CCCHHHHHHHHHHH--HcCCcCHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCEEEEec
Confidence 46777888887776 3578999999 99999999999999999999999998754
No 40
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=93.93 E-value=0.19 Score=39.20 Aligned_cols=52 Identities=15% Similarity=0.111 Sum_probs=44.9
Q ss_pred CChhHHHHHHHhhccCCCcccHHHHHHhcCCCHHHHHHHHHHHHHcCcEEEeCC
Q psy6552 177 LSLDHSLVLQQVASKNEAHISVSVLNNELNWSTERAQHALDFMVQEGYAWIDTQ 230 (254)
Q Consensus 177 ls~D~~~il~l~~~~~~g~vt~~~l~~~l~ws~~ra~~~L~~l~~~G~lwvD~q 230 (254)
++.-+-.||.... ..|.+|+.+|++.+|+++.-+...|..|++.|++-+...
T Consensus 41 lt~~~~~iL~~l~--~~~~~t~~ela~~l~i~~~tvs~~l~~Le~~Glv~r~~~ 92 (155)
T 3cdh_A 41 LRVPEWRVLACLV--DNDAMMITRLAKLSLMEQSRMTRIVDQMDARGLVTRVAD 92 (155)
T ss_dssp CCHHHHHHHHHHS--SCSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEECC-
T ss_pred CCHHHHHHHHHHH--HCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeccC
Confidence 5666778887776 357899999999999999999999999999999998644
No 41
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=93.93 E-value=0.12 Score=40.27 Aligned_cols=53 Identities=11% Similarity=0.133 Sum_probs=45.6
Q ss_pred CChhHHHHHHHhhccCCCcccHHHHHHhcCCCHHHHHHHHHHHHHcCcEEEeCCC
Q psy6552 177 LSLDHSLVLQQVASKNEAHISVSVLNNELNWSTERAQHALDFMVQEGYAWIDTQS 231 (254)
Q Consensus 177 ls~D~~~il~l~~~~~~g~vt~~~l~~~l~ws~~ra~~~L~~l~~~G~lwvD~q~ 231 (254)
++..+-.||..... .|.+|+.+|++.+++++.-+...|..|++.|++-+....
T Consensus 35 l~~~~~~iL~~l~~--~~~~t~~ela~~l~~s~~tvs~~l~~Le~~glv~r~~~~ 87 (155)
T 1s3j_A 35 VTPAQLFVLASLKK--HGSLKVSEIAERMEVKPSAVTLMADRLEQKNLIARTHNT 87 (155)
T ss_dssp CCHHHHHHHHHHHH--HSEEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEECS
T ss_pred CCHHHHHHHHHHHH--cCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeecCCC
Confidence 66667778777763 468999999999999999999999999999999987553
No 42
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=93.90 E-value=0.094 Score=40.55 Aligned_cols=54 Identities=11% Similarity=0.216 Sum_probs=44.8
Q ss_pred CCChhHHHHHHHhhccCCCcccHHHHHHhcCCCHHHHHHHHHHHHHcCcEEEeCCC
Q psy6552 176 ELSLDHSLVLQQVASKNEAHISVSVLNNELNWSTERAQHALDFMVQEGYAWIDTQS 231 (254)
Q Consensus 176 els~D~~~il~l~~~~~~g~vt~~~l~~~l~ws~~ra~~~L~~l~~~G~lwvD~q~ 231 (254)
.++..+-.+|..... .|.+|+.+|++.+++++.-+...|..|++.|++-+...+
T Consensus 37 ~l~~~~~~iL~~l~~--~~~~t~~ela~~l~~~~~tvs~~l~~Le~~Glv~r~~~~ 90 (148)
T 3nrv_A 37 GIGMTEWRIISVLSS--ASDCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVNGHS 90 (148)
T ss_dssp TCCHHHHHHHHHHHH--SSSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEC----
T ss_pred CCCHHHHHHHHHHHc--CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeecCC
Confidence 478778888877763 579999999999999999999999999999999987543
No 43
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=93.89 E-value=0.2 Score=38.17 Aligned_cols=55 Identities=11% Similarity=0.132 Sum_probs=44.8
Q ss_pred CChhHHHHHHHhhccCCCcccHHHHHHhcCCCHHHHHHHHHHHHHcCcEEEeCCC
Q psy6552 177 LSLDHSLVLQQVASKNEAHISVSVLNNELNWSTERAQHALDFMVQEGYAWIDTQS 231 (254)
Q Consensus 177 ls~D~~~il~l~~~~~~g~vt~~~l~~~l~ws~~ra~~~L~~l~~~G~lwvD~q~ 231 (254)
++..+-.+|......+.+.+|+.+|++.+++++.-+...|+.|++.|++-+....
T Consensus 32 lt~~~~~iL~~l~~~~~~~~~~~ela~~l~~~~~tvs~~l~~Le~~Gli~r~~~~ 86 (141)
T 3bro_A 32 LTGTQMTIIDYLSRNKNKEVLQRDLESEFSIKSSTATVLLQRMEIKKLLYRKVSG 86 (141)
T ss_dssp CCHHHHHHHHHHHHTTTSCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECS
T ss_pred CCHHHHHHHHHHHHCCCCCcCHHHHHHHHCCCcchHHHHHHHHHHCCCEEeeCCC
Confidence 6666777777665331227999999999999999999999999999999886543
No 44
>2pjp_A Selenocysteine-specific elongation factor; SELB, protein-RNA complex, elongation factor, winged- helix, bulge, translation/RNA complex; 2.30A {Escherichia coli}
Probab=93.86 E-value=0.35 Score=37.21 Aligned_cols=95 Identities=8% Similarity=0.092 Sum_probs=70.5
Q ss_pred eeHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHhhhhCCCeEEEEeCCceEEEEccCCCCChhHHHHHHHhhccCCCcc
Q psy6552 117 ILLDELRTRLVKSRGKSLQHQDITNEDLLAAAKKLKIFGNGFSIIPIGQGQYLVQSIPGELSLDHSLVLQQVASKNEAHI 196 (254)
Q Consensus 117 i~L~dl~~~~nr~Rg~~~~~~~IS~~Di~rA~~~L~~Lg~g~~l~~~~sg~~vv~s~p~els~D~~~il~l~~~~~~g~v 196 (254)
.+..|+... -.++++.+.+.++.+...|. ++++..+. ++.+.. +..--..+.++++. .|.+
T Consensus 21 ~~~~~la~~-----------~~~~~~~~~~~l~~l~~~G~---l~~i~~~~-~~~~~~--~~~~~~~l~~~~~~--~~~i 81 (121)
T 2pjp_A 21 WWVRDLAKE-----------TGTDEQAMRLTLRQAAQQGI---ITAIVKDR-YYRNDR--IVEFANMIRDLDQE--CGST 81 (121)
T ss_dssp EEHHHHHHH-----------TTCCHHHHHHHHHHHHHTTS---EEEEETTE-EEEHHH--HHHHHHHHHHHHHH--HSSE
T ss_pred CCHHHHHHH-----------hCCCHHHHHHHHHHHHHCCC---EEEecCCc-eECHHH--HHHHHHHHHHHHHH--CCCc
Confidence 466666654 35789999999999988884 44444243 443332 33333456777773 5899
Q ss_pred cHHHHHHhcCCCHHHHHHHHHHHHHcCcEEEeCC
Q psy6552 197 SVSVLNNELNWSTERAQHALDFMVQEGYAWIDTQ 230 (254)
Q Consensus 197 t~~~l~~~l~ws~~ra~~~L~~l~~~G~lwvD~q 230 (254)
|+.++.+.+|.|.-.|...|+.+-+.|+..+...
T Consensus 82 t~ae~Rd~lg~sRK~ai~lLE~~Dr~g~TrR~gd 115 (121)
T 2pjp_A 82 CAADFRDRLGVGRKLAIQILEYFDRIGFTRRRGN 115 (121)
T ss_dssp EHHHHHHHHTSCHHHHHHHHHHHHHHTSEEEETT
T ss_pred cHHHHHHHHCCcHHHHHHHHHHHhhcCCeEeeCC
Confidence 9999999999999999999999999999998753
No 45
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85
Probab=93.85 E-value=0.3 Score=36.15 Aligned_cols=55 Identities=11% Similarity=-0.013 Sum_probs=47.8
Q ss_pred cCCCCChhHHHHHHHhhccCCCcccHHHHHHhcCCCHHHHHHHHHHHHHcCcEEE
Q psy6552 173 IPGELSLDHSLVLQQVASKNEAHISVSVLNNELNWSTERAQHALDFMVQEGYAWI 227 (254)
Q Consensus 173 ~p~els~D~~~il~l~~~~~~g~vt~~~l~~~l~ws~~ra~~~L~~l~~~G~lwv 227 (254)
.+..++.+|..|+..+...+..+++..+|+..++.+..-....|+.|+..|++-+
T Consensus 14 k~~~Lt~~q~~Vl~~I~~~g~~gi~qkeLa~~~~l~~~tvt~iLk~LE~kglIkr 68 (91)
T 2dk5_A 14 KMKGSDNQEKLVYQIIEDAGNKGIWSRDVRYKSNLPLTEINKILKNLESKKLIKA 68 (91)
T ss_dssp CCCCSCSSHHHHHHHHHHHCTTCEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEE
T ss_pred hhcCCCHHHHHHHHHHHHcCCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEE
Confidence 3456888999999998854245899999999999999999999999999999983
No 46
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A
Probab=93.84 E-value=0.13 Score=37.83 Aligned_cols=53 Identities=11% Similarity=0.248 Sum_probs=43.0
Q ss_pred HHHHHhhccCCCcccHHHHHHhcCCCHHHHHHHHHHHHHcCcEEEeCCCCCcccceec
Q psy6552 183 LVLQQVASKNEAHISVSVLNNELNWSTERAQHALDFMVQEGYAWIDTQSPQEHLYWFP 240 (254)
Q Consensus 183 ~il~l~~~~~~g~vt~~~l~~~l~ws~~ra~~~L~~l~~~G~lwvD~q~~~e~~yw~p 240 (254)
.|+.+.. .|..|+.+|++.+|++..-...+|..|++.|++-+... +...||..
T Consensus 27 ~Il~~L~---~~~~~~~ela~~l~is~~tvs~~L~~L~~~Glv~~~~~--g~~~~y~l 79 (102)
T 3pqk_A 27 MLVCTLV---EGEFSVGELEQQIGIGQPTLSQQLGVLRESGIVETRRN--IKQIFYRL 79 (102)
T ss_dssp HHHHHHH---TCCBCHHHHHHHHTCCTTHHHHHHHHHHHTTSEEEECS--SSCCEEEE
T ss_pred HHHHHHH---hCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEe--CCEEEEEE
Confidence 4555555 25699999999999999999999999999999998876 44555553
No 47
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=93.79 E-value=0.1 Score=37.93 Aligned_cols=52 Identities=13% Similarity=0.247 Sum_probs=44.1
Q ss_pred CChhHHHHHHHhhccCCCcccHHHHHHhcCCCHHHHHHHHHHHHHcCcEEEeCC
Q psy6552 177 LSLDHSLVLQQVASKNEAHISVSVLNNELNWSTERAQHALDFMVQEGYAWIDTQ 230 (254)
Q Consensus 177 ls~D~~~il~l~~~~~~g~vt~~~l~~~l~ws~~ra~~~L~~l~~~G~lwvD~q 230 (254)
++.-+..|+..... .|.+|+.+|++.+|+++.-+...|..|++.|++-+...
T Consensus 18 l~~~~~~il~~l~~--~~~~s~~ela~~l~is~~tv~~~l~~L~~~glv~~~~~ 69 (109)
T 1sfx_A 18 FKPSDVRIYSLLLE--RGGMRVSEIARELDLSARFVRDRLKVLLKRGFVRREIV 69 (109)
T ss_dssp CCHHHHHHHHHHHH--HCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred CCHHHHHHHHHHHH--cCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEee
Confidence 55556777777763 46799999999999999999999999999999988654
No 48
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=93.77 E-value=0.28 Score=37.50 Aligned_cols=52 Identities=17% Similarity=0.133 Sum_probs=44.7
Q ss_pred CChhHHHHHHHhhccCCCcccHHHHHHhcCCCHHHHHHHHHHHHHcCcEEEeCCC
Q psy6552 177 LSLDHSLVLQQVASKNEAHISVSVLNNELNWSTERAQHALDFMVQEGYAWIDTQS 231 (254)
Q Consensus 177 ls~D~~~il~l~~~~~~g~vt~~~l~~~l~ws~~ra~~~L~~l~~~G~lwvD~q~ 231 (254)
++..+-.|+.... . |.+|+.+|++.+|+++.-+...|..|++.|++-+....
T Consensus 35 l~~~~~~iL~~l~-~--~~~~~~ela~~l~~s~~tvs~~l~~Le~~glv~r~~~~ 86 (146)
T 2gxg_A 35 LSYLDFLVLRATS-D--GPKTMAYLANRYFVTQSAITASVDKLEEMGLVVRVRDR 86 (146)
T ss_dssp CCHHHHHHHHHHT-T--SCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEECS
T ss_pred CCHHHHHHHHHHh-c--CCcCHHHHHHHhCCCchhHHHHHHHHHHCCCEEeecCC
Confidence 6666777877776 3 67999999999999999999999999999999986543
No 49
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=93.75 E-value=0.12 Score=40.91 Aligned_cols=49 Identities=16% Similarity=0.123 Sum_probs=43.3
Q ss_pred CChhHHHHHHHhhccCCCcccHHHHHHhcCCCHHHHHHHHHHHHHcCcEEE
Q psy6552 177 LSLDHSLVLQQVASKNEAHISVSVLNNELNWSTERAQHALDFMVQEGYAWI 227 (254)
Q Consensus 177 ls~D~~~il~l~~~~~~g~vt~~~l~~~l~ws~~ra~~~L~~l~~~G~lwv 227 (254)
++.-+..|+.+.+ ..|.+|..+|++.+|.|..-+...|..|++.|++.+
T Consensus 6 ld~~d~~il~~L~--~~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~ 54 (152)
T 2cg4_A 6 IDNLDRGILEALM--GNARTAYAELAKQFGVSPETIHVRVEKMKQAGIITG 54 (152)
T ss_dssp CCHHHHHHHHHHH--HCTTSCHHHHHHHHTSCHHHHHHHHHHHHHHTSEEE
T ss_pred cCHHHHHHHHHHH--HcCCCCHHHHHHHHCcCHHHHHHHHHHHHHcCCcce
Confidence 5655668888887 358899999999999999999999999999999985
No 50
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=93.71 E-value=0.18 Score=40.31 Aligned_cols=54 Identities=17% Similarity=0.160 Sum_probs=44.4
Q ss_pred CChhHHHHHHHhhccCCCcccHHHHHHhcCCCHHHHHHHHHHHHHcCcEEEeCCC
Q psy6552 177 LSLDHSLVLQQVASKNEAHISVSVLNNELNWSTERAQHALDFMVQEGYAWIDTQS 231 (254)
Q Consensus 177 ls~D~~~il~l~~~~~~g~vt~~~l~~~l~ws~~ra~~~L~~l~~~G~lwvD~q~ 231 (254)
++..+-.||..+... .+.+|+.+|++.+++++.-+...|+.|++.|++-+....
T Consensus 51 lt~~q~~vL~~L~~~-~~~~t~~eLa~~l~i~~~tvs~~l~~Le~~GlV~r~~~~ 104 (166)
T 3deu_A 51 LTQTHWVTLHNIHQL-PPDQSQIQLAKAIGIEQPSLVRTLDQLEDKGLISRQTCA 104 (166)
T ss_dssp CCHHHHHHHHHHHHS-CSSEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEC---
T ss_pred CCHHHHHHHHHHHHc-CCCCCHHHHHHHHCCCHhhHHHHHHHHHHCCCEEeeCCC
Confidence 666777787776632 567999999999999999999999999999999987553
No 51
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=93.69 E-value=0.076 Score=40.94 Aligned_cols=54 Identities=7% Similarity=0.114 Sum_probs=41.4
Q ss_pred CCChhHHHHHHHhhccCCCcccHHHHHHhcCCCHHHHHHHHHHHHHcCcEEEeCCC
Q psy6552 176 ELSLDHSLVLQQVASKNEAHISVSVLNNELNWSTERAQHALDFMVQEGYAWIDTQS 231 (254)
Q Consensus 176 els~D~~~il~l~~~~~~g~vt~~~l~~~l~ws~~ra~~~L~~l~~~G~lwvD~q~ 231 (254)
.++.-+-.||..... .|.+|+.+|++.+|+++.-+...|+.|++.|++-+...+
T Consensus 34 ~lt~~~~~vL~~l~~--~~~~t~~eLa~~l~~~~~tvs~~l~~L~~~Glv~r~~~~ 87 (142)
T 3ech_A 34 DLTPPDVHVLKLIDE--QRGLNLQDLGRQMCRDKALITRKIRELEGRNLVRRERNP 87 (142)
T ss_dssp CCCHHHHHHHHHHHH--TTTCCHHHHHHHHC---CHHHHHHHHHHHTTSEEC----
T ss_pred CCCHHHHHHHHHHHh--CCCcCHHHHHHHhCCCHHHHHHHHHHHHHCCCEeeccCC
Confidence 377778888877773 478999999999999999999999999999999987654
No 52
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=93.67 E-value=0.17 Score=39.82 Aligned_cols=52 Identities=15% Similarity=0.139 Sum_probs=44.9
Q ss_pred CChhHHHHHHHhhccCCCcccHHHHHHhcCCCHHHHHHHHHHHHHcCcEEEeCC
Q psy6552 177 LSLDHSLVLQQVASKNEAHISVSVLNNELNWSTERAQHALDFMVQEGYAWIDTQ 230 (254)
Q Consensus 177 ls~D~~~il~l~~~~~~g~vt~~~l~~~l~ws~~ra~~~L~~l~~~G~lwvD~q 230 (254)
++.-+-.||..... .|.+|..+|++.+|+++.-+...|..|++.|++-+...
T Consensus 50 lt~~~~~iL~~l~~--~~~~t~~ela~~l~is~~tvs~~l~~Le~~Gli~r~~~ 101 (162)
T 3cjn_A 50 LSTAKMRALAILSA--KDGLPIGTLGIFAVVEQSTLSRALDGLQADGLVRREVD 101 (162)
T ss_dssp CCHHHHHHHHHHHH--SCSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEC
T ss_pred CCHHHHHHHHHHHH--CCCCCHHHHHHHHCCChhHHHHHHHHHHHCCCEEecCC
Confidence 56667778777763 47899999999999999999999999999999998754
No 53
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=93.63 E-value=0.14 Score=40.40 Aligned_cols=49 Identities=14% Similarity=0.186 Sum_probs=42.9
Q ss_pred CChhHHHHHHHhhccCCCcccHHHHHHhcCCCHHHHHHHHHHHHHcCcEEE
Q psy6552 177 LSLDHSLVLQQVASKNEAHISVSVLNNELNWSTERAQHALDFMVQEGYAWI 227 (254)
Q Consensus 177 ls~D~~~il~l~~~~~~g~vt~~~l~~~l~ws~~ra~~~L~~l~~~G~lwv 227 (254)
++.-+..|+.+.+ ..|.+|..+|++.+|.|+.-+...|..|++.|++.+
T Consensus 7 ld~~d~~il~~L~--~~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~ 55 (151)
T 2dbb_A 7 LDRVDMQLVKILS--ENSRLTYRELADILNTTRQRIARRIDKLKKLGIIRK 55 (151)
T ss_dssp CCHHHHHHHHHHH--HCTTCCHHHHHHHTTSCHHHHHHHHHHHHHHTSEEE
T ss_pred CCHHHHHHHHHHH--HcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEE
Confidence 5555667888877 358899999999999999999999999999999984
No 54
>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=93.60 E-value=0.15 Score=39.19 Aligned_cols=56 Identities=13% Similarity=0.179 Sum_probs=42.3
Q ss_pred HHHHHHhhccCCCcccHHHHHHhcCCCHHHHHHHHHHHHHcCcEEEeCCCCCcccceecc
Q psy6552 182 SLVLQQVASKNEAHISVSVLNNELNWSTERAQHALDFMVQEGYAWIDTQSPQEHLYWFPS 241 (254)
Q Consensus 182 ~~il~l~~~~~~g~vt~~~l~~~l~ws~~ra~~~L~~l~~~G~lwvD~q~~~e~~yw~p~ 241 (254)
..|+.+... .|..|+.+|++.+|++..-+...|..|++.|++-+... +...||..+
T Consensus 45 l~IL~~L~~--~~~~s~~eLa~~l~is~stvs~~L~~L~~~Glv~~~~~--gr~~~y~l~ 100 (122)
T 1u2w_A 45 AKITYALCQ--DEELCVCDIANILGVTIANASHHLRTLYKQGVVNFRKE--GKLALYSLG 100 (122)
T ss_dssp HHHHHHHHH--SSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEC------CCEEEES
T ss_pred HHHHHHHHH--CCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEE--CCEEEEEEC
Confidence 356665552 46799999999999999999999999999999998755 344555543
No 55
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=93.58 E-value=0.12 Score=40.68 Aligned_cols=53 Identities=19% Similarity=0.283 Sum_probs=44.7
Q ss_pred CChhHHHHHHHhhccCCCcccHHHHHHhcCCCHHHHHHHHHHHHHcCcEEEeCCC
Q psy6552 177 LSLDHSLVLQQVASKNEAHISVSVLNNELNWSTERAQHALDFMVQEGYAWIDTQS 231 (254)
Q Consensus 177 ls~D~~~il~l~~~~~~g~vt~~~l~~~l~ws~~ra~~~L~~l~~~G~lwvD~q~ 231 (254)
++.-|-.||..... .|.+|+.+|++.+++++.-+...|+.|++.|++-+...+
T Consensus 48 lt~~q~~vL~~l~~--~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~~~ 100 (159)
T 3s2w_A 48 IGSGQFPFLMRLYR--EDGINQESLSDYLKIDKGTTARAIQKLVDEGYVFRQRDE 100 (159)
T ss_dssp CCTTTHHHHHHHHH--SCSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECC
T ss_pred CCHHHHHHHHHHHH--CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEecCC
Confidence 55556777776653 478999999999999999999999999999999987554
No 56
>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19
Probab=93.54 E-value=0.42 Score=34.44 Aligned_cols=57 Identities=23% Similarity=0.253 Sum_probs=44.5
Q ss_pred hHHHHHHHhhccC-CCcccHHHHHHhcCCCHHHHHHHHHHHHHcCcEEEeCCCCCccccee
Q psy6552 180 DHSLVLQQVASKN-EAHISVSVLNNELNWSTERAQHALDFMVQEGYAWIDTQSPQEHLYWF 239 (254)
Q Consensus 180 D~~~il~l~~~~~-~g~vt~~~l~~~l~ws~~ra~~~L~~l~~~G~lwvD~q~~~e~~yw~ 239 (254)
++..|..++.... ++++|+.+|+.+||.++.-+..+|-.|++.|.++.=... +-.|+
T Consensus 13 ~~~~v~~~i~~L~~~~~~Ta~~IAkkLg~sK~~vNr~LY~L~kkG~V~~~~~~---PP~W~ 70 (75)
T 1sfu_A 13 IFSLVKKEVLSLNTNDYTTAISLSNRLKINKKKINQQLYKLQKEDTVKMVPSN---PPKWF 70 (75)
T ss_dssp HHHHHHHHHHTSCTTCEECHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEECCS---SCEEE
T ss_pred HHHHHHHHHHhCCCCcchHHHHHHHHHCCCHHHHHHHHHHHHHCCCEecCCCC---CCCcc
Confidence 4666666665433 445999999999999999999999999999999877553 44454
No 57
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=93.50 E-value=0.15 Score=40.37 Aligned_cols=53 Identities=17% Similarity=0.199 Sum_probs=45.9
Q ss_pred CChhHHHHHHHhhccCCCcccHHHHHHhcCCCHHHHHHHHHHHHHcCcEEEeCCC
Q psy6552 177 LSLDHSLVLQQVASKNEAHISVSVLNNELNWSTERAQHALDFMVQEGYAWIDTQS 231 (254)
Q Consensus 177 ls~D~~~il~l~~~~~~g~vt~~~l~~~l~ws~~ra~~~L~~l~~~G~lwvD~q~ 231 (254)
++.-|-.||..+.. .|.+|+.+|++.+++++.-+...|+.|++.|++-+...+
T Consensus 44 lt~~q~~iL~~l~~--~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~~~ 96 (162)
T 3k0l_A 44 ISLPQFTALSVLAA--KPNLSNAKLAERSFIKPQSANKILQDLLANGWIEKAPDP 96 (162)
T ss_dssp CCHHHHHHHHHHHH--CTTCCHHHHHHHHTSCGGGHHHHHHHHHHTTSEEEEECC
T ss_pred CCHHHHHHHHHHHH--CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCcCeEecCCC
Confidence 66678788877763 478999999999999999999999999999999987654
No 58
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=93.46 E-value=0.13 Score=39.00 Aligned_cols=52 Identities=8% Similarity=0.056 Sum_probs=45.0
Q ss_pred CChhHHHHHHHhhccCCCcccHHHHHHhcCCCHHHHHHHHHHHHHcCcEEEeCC
Q psy6552 177 LSLDHSLVLQQVASKNEAHISVSVLNNELNWSTERAQHALDFMVQEGYAWIDTQ 230 (254)
Q Consensus 177 ls~D~~~il~l~~~~~~g~vt~~~l~~~l~ws~~ra~~~L~~l~~~G~lwvD~q 230 (254)
++..+-.||..... .|.+|..+|++.+|+++.-+...|..|++.|++-+...
T Consensus 36 l~~~~~~iL~~l~~--~~~~t~~ela~~l~~~~~tvs~~l~~L~~~glv~r~~~ 87 (140)
T 2nnn_A 36 LTPTQWAALVRLGE--TGPCPQNQLGRLTAMDAATIKGVVERLDKRGLIQRSAD 87 (140)
T ss_dssp CCHHHHHHHHHHHH--HSSBCHHHHHHHTTCCHHHHHHHHHHHHHTTCEEEEEE
T ss_pred CCHHHHHHHHHHHH--cCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeeCC
Confidence 67677788777763 46899999999999999999999999999999998644
No 59
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=93.42 E-value=0.14 Score=39.89 Aligned_cols=53 Identities=17% Similarity=0.258 Sum_probs=43.6
Q ss_pred CChhHHHHHHHhhccCCCcccHHHHHHhcCCCHHHHHHHHHHHHHcCcEEEeCCC
Q psy6552 177 LSLDHSLVLQQVASKNEAHISVSVLNNELNWSTERAQHALDFMVQEGYAWIDTQS 231 (254)
Q Consensus 177 ls~D~~~il~l~~~~~~g~vt~~~l~~~l~ws~~ra~~~L~~l~~~G~lwvD~q~ 231 (254)
++..+-.||..+.. .|.+|+.+|++.+++++.-+...|+.|++.|++-+...+
T Consensus 39 lt~~q~~iL~~l~~--~~~~~~~eLa~~l~~~~~~vs~~l~~L~~~Glv~r~~~~ 91 (149)
T 4hbl_A 39 ITYSQYLVMLTLWE--ENPQTLNSIGRHLDLSSNTLTPMLKRLEQSGWVKRERQQ 91 (149)
T ss_dssp CCHHHHHHHHHHHH--SSSEEHHHHHHHHTCCHHHHHHHHHHHHHHTSEEC----
T ss_pred CCHHHHHHHHHHHH--CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeeCCCC
Confidence 66677788777763 478999999999999999999999999999999987553
No 60
>2g9w_A Conserved hypothetical protein; DNA-binding domain, bacterial transcription repressor, DNA B protein; 1.80A {Mycobacterium tuberculosis} SCOP: a.4.5.39
Probab=93.40 E-value=0.26 Score=38.40 Aligned_cols=61 Identities=11% Similarity=0.115 Sum_probs=48.8
Q ss_pred CChhHHHHHHHhhccCCCcccHHHHHHhcC----CCHHHHHHHHHHHHHcCcEEEeCCCCCcccceec
Q psy6552 177 LSLDHSLVLQQVASKNEAHISVSVLNNELN----WSTERAQHALDFMVQEGYAWIDTQSPQEHLYWFP 240 (254)
Q Consensus 177 ls~D~~~il~l~~~~~~g~vt~~~l~~~l~----ws~~ra~~~L~~l~~~G~lwvD~q~~~e~~yw~p 240 (254)
++.-+-.|+...-.. .|.+|+.+|++.++ |++.-....|+.|++.|++-+... +...+|+|
T Consensus 7 lt~~e~~vL~~L~~~-~~~~t~~el~~~l~~~~~~~~~Tvt~~l~rLe~kGlv~r~~~--~r~~~~~~ 71 (138)
T 2g9w_A 7 LGDLERAVMDHLWSR-TEPQTVRQVHEALSARRDLAYTTVMAVLQRLAKKNLVLQIRD--DRAHRYAP 71 (138)
T ss_dssp CCHHHHHHHHHHHTC-SSCEEHHHHHHHHTTTCCCCHHHHHHHHHHHHHTTSEEEEC-----CCEEEE
T ss_pred CCHHHHHHHHHHHhc-CCCCCHHHHHHHHhccCCCCHHHHHHHHHHHHHCCCEEEEec--CCeEEEEe
Confidence 676778888888732 47899999999997 999999999999999999999865 34445555
No 61
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=93.38 E-value=0.17 Score=40.32 Aligned_cols=54 Identities=11% Similarity=0.095 Sum_probs=45.9
Q ss_pred CCChhHHHHHHHhhccCCCcccHHHHHHhcCCCHHHHHHHHHHHHHcCcEEEeCCC
Q psy6552 176 ELSLDHSLVLQQVASKNEAHISVSVLNNELNWSTERAQHALDFMVQEGYAWIDTQS 231 (254)
Q Consensus 176 els~D~~~il~l~~~~~~g~vt~~~l~~~l~ws~~ra~~~L~~l~~~G~lwvD~q~ 231 (254)
.++.-+-.||..+.. .|.+|+.+|++.+|+++.-+...|+.|++.|++-+....
T Consensus 42 ~lt~~~~~iL~~L~~--~~~~t~~eLa~~l~is~~tvs~~l~~Le~~GlV~r~~~~ 95 (168)
T 2nyx_A 42 NITIPQFRTLVILSN--HGPINLATLATLLGVQPSATGRMVDRLVGAELIDRLPHP 95 (168)
T ss_dssp SCCHHHHHHHHHHHH--HCSEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEECS
T ss_pred CCCHHHHHHHHHHHH--cCCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEeccCC
Confidence 367678788777763 368999999999999999999999999999999986543
No 62
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=93.30 E-value=0.16 Score=39.14 Aligned_cols=54 Identities=11% Similarity=0.114 Sum_probs=44.8
Q ss_pred CChhHHHHHHHhhccCCCcccHHHHHHhcCCCHHHHHHHHHHHHHcCcEEEeCCC
Q psy6552 177 LSLDHSLVLQQVASKNEAHISVSVLNNELNWSTERAQHALDFMVQEGYAWIDTQS 231 (254)
Q Consensus 177 ls~D~~~il~l~~~~~~g~vt~~~l~~~l~ws~~ra~~~L~~l~~~G~lwvD~q~ 231 (254)
++..+-.||..+... .|.+|+.+|++.+|+++.-+...|..|++.|++-+....
T Consensus 33 l~~~~~~iL~~l~~~-~~~~~~~~la~~l~i~~~~vs~~l~~Le~~glv~r~~~~ 86 (147)
T 2hr3_A 33 VQFSQLVVLGAIDRL-GGDVTPSELAAAERMRSSNLAALLRELERGGLIVRHADP 86 (147)
T ss_dssp HHHHHHHHHHHHHHT-TSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEC--
T ss_pred CCHHHHHHHHHHHHc-CCCCCHHHHHHHhCCChhhHHHHHHHHHHCCCEeeCCCC
Confidence 566677777777631 578999999999999999999999999999999987553
No 63
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=93.25 E-value=0.18 Score=39.66 Aligned_cols=49 Identities=10% Similarity=0.144 Sum_probs=42.7
Q ss_pred CChhHHHHHHHhhccCCCcccHHHHHHhcCCCHHHHHHHHHHHHHcCcEEE
Q psy6552 177 LSLDHSLVLQQVASKNEAHISVSVLNNELNWSTERAQHALDFMVQEGYAWI 227 (254)
Q Consensus 177 ls~D~~~il~l~~~~~~g~vt~~~l~~~l~ws~~ra~~~L~~l~~~G~lwv 227 (254)
++.-+..|+.+.+ ..|.+|..+|++.+|.|+.-+...|..|++.|++-+
T Consensus 3 ld~~d~~il~~L~--~~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~ 51 (144)
T 2cfx_A 3 LDQIDLNIIEELK--KDSRLSMRELGRKIKLSPPSVTERVRQLESFGIIKQ 51 (144)
T ss_dssp CCHHHHHHHHHHH--HCSCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred CCHHHHHHHHHHH--HcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEE
Confidence 5555667888877 358899999999999999999999999999999974
No 64
>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=93.23 E-value=0.17 Score=38.91 Aligned_cols=53 Identities=15% Similarity=0.171 Sum_probs=45.1
Q ss_pred CChhHHHHHHHhhccCCCcccHHHHHHhcCCCHHHHHHHHHHHHHcCcEEEeCCC
Q psy6552 177 LSLDHSLVLQQVASKNEAHISVSVLNNELNWSTERAQHALDFMVQEGYAWIDTQS 231 (254)
Q Consensus 177 ls~D~~~il~l~~~~~~g~vt~~~l~~~l~ws~~ra~~~L~~l~~~G~lwvD~q~ 231 (254)
++..+-.|+..... .|.+|+.+|++.+++++.-+...|..|++.|++-+....
T Consensus 38 l~~~~~~iL~~l~~--~~~~~~~~la~~l~~~~~tvs~~l~~L~~~glv~r~~~~ 90 (147)
T 1z91_A 38 ITYPQYLALLLLWE--HETLTVKKMGEQLYLDSGTLTPMLKRMEQQGLITRKRSE 90 (147)
T ss_dssp CCHHHHHHHHHHHH--HSEEEHHHHHHTTTCCHHHHHHHHHHHHHHTSEECCBCS
T ss_pred CCHHHHHHHHHHHH--CCCCCHHHHHHHHCCCcCcHHHHHHHHHHCCCEEeccCC
Confidence 66667777776663 468999999999999999999999999999999986543
No 65
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=93.23 E-value=0.2 Score=38.41 Aligned_cols=56 Identities=20% Similarity=0.286 Sum_probs=45.8
Q ss_pred CCChhHHHHHHHhhccCCCcccHHHHHHhcCCCHHHHHHHHHHHHHcCcEEEeCCC
Q psy6552 176 ELSLDHSLVLQQVASKNEAHISVSVLNNELNWSTERAQHALDFMVQEGYAWIDTQS 231 (254)
Q Consensus 176 els~D~~~il~l~~~~~~g~vt~~~l~~~l~ws~~ra~~~L~~l~~~G~lwvD~q~ 231 (254)
.++.-+-.+|........+.+|+.+|++.+++++.-+...|+.|++.|++-+...+
T Consensus 34 ~lt~~q~~vL~~l~~~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~~~ 89 (127)
T 2frh_A 34 SISFEEFAVLTYISENKEKEYYLKDIINHLNYKQPQVVKAVKILSQEDYFDKKRNE 89 (127)
T ss_dssp CCCHHHHHHHHHHHHTCCSEEEHHHHHHHSSSHHHHHHHHHHHHHHTTSSCCBCCS
T ss_pred CCCHHHHHHHHHHHhccCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEecCCC
Confidence 36777777776665322378999999999999999999999999999999985443
No 66
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=93.10 E-value=0.25 Score=38.33 Aligned_cols=49 Identities=20% Similarity=0.230 Sum_probs=42.6
Q ss_pred CChhHHHHHHHhhccCCCcccHHHHHHhcCCCHHHHHHHHHHHHHcCcEEE
Q psy6552 177 LSLDHSLVLQQVASKNEAHISVSVLNNELNWSTERAQHALDFMVQEGYAWI 227 (254)
Q Consensus 177 ls~D~~~il~l~~~~~~g~vt~~~l~~~l~ws~~ra~~~L~~l~~~G~lwv 227 (254)
++.-+-.||..... .|.+|+.+|++.+++++.-+...|..|++.|++-+
T Consensus 39 lt~~~~~iL~~l~~--~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r 87 (154)
T 2qww_A 39 LTIQQLAMINVIYS--TPGISVADLTKRLIITGSSAAANVDGLISLGLVVK 87 (154)
T ss_dssp CCHHHHHHHHHHHH--STTEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred CCHHHHHHHHHHHH--CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEe
Confidence 56567777776663 46799999999999999999999999999999999
No 67
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=93.04 E-value=0.13 Score=39.06 Aligned_cols=52 Identities=19% Similarity=0.279 Sum_probs=44.9
Q ss_pred CChhHHHHHHHhhccCCCcccHHHHHHhcCCCHHHHHHHHHHHHHcCcEEEeCC
Q psy6552 177 LSLDHSLVLQQVASKNEAHISVSVLNNELNWSTERAQHALDFMVQEGYAWIDTQ 230 (254)
Q Consensus 177 ls~D~~~il~l~~~~~~g~vt~~~l~~~l~ws~~ra~~~L~~l~~~G~lwvD~q 230 (254)
++..+-.|+..... .|.+|+.+|++.+++++.-+...|..|++.|++-+...
T Consensus 31 l~~~~~~iL~~l~~--~~~~~~~ela~~l~~~~~tvs~~l~~L~~~gli~r~~~ 82 (139)
T 3bja_A 31 ISYVQFGVIQVLAK--SGKVSMSKLIENMGCVPSNMTTMIQRMKRDGYVMTEKN 82 (139)
T ss_dssp CCHHHHHHHHHHHH--SCSEEHHHHHHHCSSCCTTHHHHHHHHHHTTSEEEEEC
T ss_pred CCHHHHHHHHHHHH--cCCcCHHHHHHHHCCChhHHHHHHHHHHHCCCeeeccC
Confidence 67677788777763 47899999999999999999999999999999988644
No 68
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=92.98 E-value=0.16 Score=41.56 Aligned_cols=52 Identities=13% Similarity=0.142 Sum_probs=43.1
Q ss_pred cCCCCChhHHHHHHHhhccCCCcccHHHHHHhcCCCHHHHHHHHHHHHHcCcEE
Q psy6552 173 IPGELSLDHSLVLQQVASKNEAHISVSVLNNELNWSTERAQHALDFMVQEGYAW 226 (254)
Q Consensus 173 ~p~els~D~~~il~l~~~~~~g~vt~~~l~~~l~ws~~ra~~~L~~l~~~G~lw 226 (254)
.+..++.-+..|+.+.+. .|.+|..+|++.+|+|+.-+...|+.|++.|++-
T Consensus 11 ~~~~ld~~d~~IL~~L~~--~~~~s~~eLA~~lglS~~tv~~~l~~L~~~G~I~ 62 (171)
T 2ia0_A 11 SEIHLDDLDRNILRLLKK--DARLTISELSEQLKKPESTIHFRIKKLQERGVIE 62 (171)
T ss_dssp ---CCCHHHHHHHHHHHH--CTTCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEE
T ss_pred CcCCCCHHHHHHHHHHHH--cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEE
Confidence 344466656788888873 5789999999999999999999999999999994
No 69
>1sd4_A Penicillinase repressor; BLAI, MECI, methicillin, B-lactam, DNA binding PR; 2.00A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1xsd_A
Probab=92.95 E-value=0.19 Score=38.00 Aligned_cols=62 Identities=10% Similarity=0.092 Sum_probs=49.6
Q ss_pred CCCChhHHHHHHHhhccCCCcccHHHHHHhcC----CCHHHHHHHHHHHHHcCcEEEeCCCCCcccceec
Q psy6552 175 GELSLDHSLVLQQVASKNEAHISVSVLNNELN----WSTERAQHALDFMVQEGYAWIDTQSPQEHLYWFP 240 (254)
Q Consensus 175 ~els~D~~~il~l~~~~~~g~vt~~~l~~~l~----ws~~ra~~~L~~l~~~G~lwvD~q~~~e~~yw~p 240 (254)
..++.-|-.|+...-. .|.+|+.+|++.++ |++.-....|+.|++.|++-+... +....|+|
T Consensus 6 ~~Lt~~q~~vL~~L~~--~~~~t~~el~~~l~~~~~~~~~Tvt~~l~rLe~kGlv~R~~~--~r~~~~~~ 71 (126)
T 1sd4_A 6 VEISMAEWDVMNIIWD--KKSVSANEIVVEIQKYKEVSDKTIRTLITRLYKKEIIKRYKS--ENIYFYSS 71 (126)
T ss_dssp CCCCHHHHHHHHHHHH--SSSEEHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTSEEEEEE--TTEEEEEE
T ss_pred CCCCHHHHHHHHHHHh--cCCCCHHHHHHHHhhcCCCChhhHHHHHHHHHHCCceEEEeC--CCeEEEEE
Confidence 3477778888887763 47899999999986 899999999999999999999764 23444544
No 70
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=92.82 E-value=0.17 Score=38.47 Aligned_cols=52 Identities=12% Similarity=0.061 Sum_probs=44.3
Q ss_pred CChhHHHHHHHhhccCCCcccHHHHHHhcCCCHHHHHHHHHHHHHcCcEEEeCC
Q psy6552 177 LSLDHSLVLQQVASKNEAHISVSVLNNELNWSTERAQHALDFMVQEGYAWIDTQ 230 (254)
Q Consensus 177 ls~D~~~il~l~~~~~~g~vt~~~l~~~l~ws~~ra~~~L~~l~~~G~lwvD~q 230 (254)
++..+-.++..... .|.+|..+|++.+++++.-+...|..|++.|++-+...
T Consensus 34 lt~~~~~iL~~l~~--~~~~t~~ela~~l~~s~~~vs~~l~~Le~~glv~r~~~ 85 (142)
T 2fbi_A 34 LTEQQWRVIRILRQ--QGEMESYQLANQACILRPSMTGVLARLERDGIVRRWKA 85 (142)
T ss_dssp CCHHHHHHHHHHHH--HCSEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred CCHHHHHHHHHHHH--cCCCCHHHHHHHHCCCHhHHHHHHHHHHHCCCEEeecC
Confidence 56667777776663 36799999999999999999999999999999998654
No 71
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=92.76 E-value=0.23 Score=39.16 Aligned_cols=53 Identities=17% Similarity=0.177 Sum_probs=44.4
Q ss_pred CChhHHHHHHHhhccCCCcccHHHHHHhcCCCHHHHHHHHHHHHHcCcEEEeCCC
Q psy6552 177 LSLDHSLVLQQVASKNEAHISVSVLNNELNWSTERAQHALDFMVQEGYAWIDTQS 231 (254)
Q Consensus 177 ls~D~~~il~l~~~~~~g~vt~~~l~~~l~ws~~ra~~~L~~l~~~G~lwvD~q~ 231 (254)
++.-|-.||..+.. .|.+|+.+|++.+++++.-+...|+.|++.|++-+...+
T Consensus 51 lt~~q~~vL~~l~~--~~~~t~~eLa~~l~~~~~~vs~~l~~Le~~Glv~r~~~~ 103 (161)
T 3e6m_A 51 LPTPKLRLLSSLSA--YGELTVGQLATLGVMEQSTTSRTVDQLVDEGLAARSISD 103 (161)
T ss_dssp CCHHHHHHHHHHHH--HSEEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEECC--
T ss_pred CCHHHHHHHHHHHh--CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeeCCc
Confidence 56667777777663 368999999999999999999999999999999987553
No 72
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=92.76 E-value=0.19 Score=39.36 Aligned_cols=52 Identities=13% Similarity=0.173 Sum_probs=43.0
Q ss_pred CChhHHHHHHHhhccCCCcccHHHHHHhcCCCHHHHHHHHHHHHHcCcEEEeCC
Q psy6552 177 LSLDHSLVLQQVASKNEAHISVSVLNNELNWSTERAQHALDFMVQEGYAWIDTQ 230 (254)
Q Consensus 177 ls~D~~~il~l~~~~~~g~vt~~~l~~~l~ws~~ra~~~L~~l~~~G~lwvD~q 230 (254)
++..+-.||..+.. .|.+|..+|++.+|+++.-+...|..|++.|++-+...
T Consensus 47 lt~~~~~iL~~l~~--~~~~t~~ela~~l~is~~tvs~~l~~Le~~glv~r~~~ 98 (162)
T 2fa5_A 47 MAIPEWRVITILAL--YPGSSASEVSDRTAMDKVAVSRAVARLLERGFIRRETH 98 (162)
T ss_dssp CCHHHHHHHHHHHH--STTCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEC---
T ss_pred CCHHHHHHHHHHHh--CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeeecC
Confidence 56567777777663 47899999999999999999999999999999998543
No 73
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=92.76 E-value=0.14 Score=39.75 Aligned_cols=54 Identities=9% Similarity=0.086 Sum_probs=42.8
Q ss_pred CChhHHHHHHHhhccCCCcccHHHHHHhcCCCHHHHHHHHHHHHHcCcEEEeCCC
Q psy6552 177 LSLDHSLVLQQVASKNEAHISVSVLNNELNWSTERAQHALDFMVQEGYAWIDTQS 231 (254)
Q Consensus 177 ls~D~~~il~l~~~~~~g~vt~~~l~~~l~ws~~ra~~~L~~l~~~G~lwvD~q~ 231 (254)
++.-|-.||...... .+.+|+.+|++.+++++.-+...|+.|++.|++-+....
T Consensus 37 lt~~q~~vL~~l~~~-~~~~t~~eLa~~l~i~~~tvs~~l~~Le~~Glv~r~~~~ 90 (150)
T 3fm5_A 37 LRVRSYSVLVLACEQ-AEGVNQRGVAATMGLDPSQIVGLVDELEERGLVVRTLDP 90 (150)
T ss_dssp CCHHHHHHHHHHHHS-TTCCCSHHHHHHHTCCHHHHHHHHHHHHTTTSEEC----
T ss_pred CCHHHHHHHHHHHhC-CCCcCHHHHHHHHCCCHhHHHHHHHHHHHCCCEEeeCCc
Confidence 666677777766433 457999999999999999999999999999999886543
No 74
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=92.75 E-value=0.19 Score=38.51 Aligned_cols=53 Identities=23% Similarity=0.180 Sum_probs=45.0
Q ss_pred CChhHHHHHHHhhccCCCcccHHHHHHhcCCCHHHHHHHHHHHHHcCcEEEeCCC
Q psy6552 177 LSLDHSLVLQQVASKNEAHISVSVLNNELNWSTERAQHALDFMVQEGYAWIDTQS 231 (254)
Q Consensus 177 ls~D~~~il~l~~~~~~g~vt~~~l~~~l~ws~~ra~~~L~~l~~~G~lwvD~q~ 231 (254)
++..+-.|+..... .|.+|+.+|++.+++++.-+...|..|++.|++-+...+
T Consensus 35 l~~~~~~iL~~l~~--~~~~~~~ela~~l~~~~~tvs~~l~~L~~~gli~r~~~~ 87 (142)
T 2bv6_A 35 LTYPQFLVLTILWD--ESPVNVKKVVTELALDTGTVSPLLKRMEQVDLIKRERSE 87 (142)
T ss_dssp CCHHHHHHHHHHHH--SSEEEHHHHHHHTTCCTTTHHHHHHHHHHTTSEEEEECS
T ss_pred CCHHHHHHHHHHHH--cCCcCHHHHHHHHCCChhhHHHHHHHHHHCCCEEeecCC
Confidence 56567777777663 478999999999999999999999999999999887653
No 75
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=92.74 E-value=0.17 Score=38.70 Aligned_cols=52 Identities=13% Similarity=0.093 Sum_probs=44.8
Q ss_pred CChhHHHHHHHhhccCCCcccHHHHHHhcCCCHHHHHHHHHHHHHcCcEEEeCC
Q psy6552 177 LSLDHSLVLQQVASKNEAHISVSVLNNELNWSTERAQHALDFMVQEGYAWIDTQ 230 (254)
Q Consensus 177 ls~D~~~il~l~~~~~~g~vt~~~l~~~l~ws~~ra~~~L~~l~~~G~lwvD~q 230 (254)
++..+-.|+..... .|.+|..+|++.+++++.-+...|..|++.|++-+...
T Consensus 31 l~~~~~~iL~~l~~--~~~~~~~~la~~l~~s~~tvs~~l~~L~~~glv~r~~~ 82 (145)
T 2a61_A 31 ITPAQFDILQKIYF--EGPKRPGELSVLLGVAKSTVTGLVKRLEADGYLTRTPD 82 (145)
T ss_dssp CCHHHHHHHHHHHH--HCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred CCHHHHHHHHHHHH--cCCCCHHHHHHHHCCCchhHHHHHHHHHHCCCeeecCC
Confidence 66667778777663 46899999999999999999999999999999998754
No 76
>1t6s_A Conserved hypothetical protein; A winged helix-turn-helix, structural genomics, BSGC structu by NIH, protein structure initiative, PSI; 1.95A {Chlorobium tepidum tls} SCOP: a.4.5.60 a.4.5.60
Probab=92.74 E-value=0.34 Score=39.85 Aligned_cols=99 Identities=20% Similarity=0.209 Sum_probs=73.6
Q ss_pred CCceeHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHhhh----hCCCeEEEEeCCceEEEEccCCCCChh---------
Q psy6552 114 GGLILLDELRTRLVKSRGKSLQHQDITNEDLLAAAKKLKI----FGNGFSIIPIGQGQYLVQSIPGELSLD--------- 180 (254)
Q Consensus 114 GGii~L~dl~~~~nr~Rg~~~~~~~IS~~Di~rA~~~L~~----Lg~g~~l~~~~sg~~vv~s~p~els~D--------- 180 (254)
|-=+++.+|-..+. ..++++++..+++.|.. -+.|++|+.++ |..-+++.|. +..-
T Consensus 20 ~~pvs~~~La~~~~---------~~~~~~~v~~~l~~L~~~y~~~~rg~~l~~v~-~gy~l~t~~~-~~~~v~~~~~~~~ 88 (162)
T 1t6s_A 20 EEPVNLQTLSQITA---------HKFTPSELQEAVDELNRDYEATGRTFRIHAIA-GGYRFLTEPE-FADLVRQLLAPVI 88 (162)
T ss_dssp SSCBCHHHHHHHTT---------CCCCHHHHHHHHHHHHHHHHHHTCSEEEEEET-TEEEEEECGG-GHHHHHHHHSCHH
T ss_pred CCCCCHHHHHHHhC---------cCCCHHHHHHHHHHHHHHhhhCCCCEEEEEEC-CEEEEEEcHH-HHHHHHHHhcccc
Confidence 33388888877653 23799999999998843 37899999999 7788888883 2210
Q ss_pred H-------HHHHHHhhccCCCcccHHHHHHhcCCCHHHHHHHHHHHHHcCcEEEe
Q psy6552 181 H-------SLVLQQVASKNEAHISVSVLNNELNWSTERAQHALDFMVQEGYAWID 228 (254)
Q Consensus 181 ~-------~~il~l~~~~~~g~vt~~~l~~~l~ws~~ra~~~L~~l~~~G~lwvD 228 (254)
. ..+|.++.. .+-||-.+|++..|.+ +...+..|++.|++..-
T Consensus 89 ~~~LS~aaLEtLaiIay--~qPiTR~eI~~irGv~---~~~~v~~L~e~glI~e~ 138 (162)
T 1t6s_A 89 QRRLSRSMLEVLAVVAW--HQPVTKGEIQQIRGAS---PDYSIDRLLARGLIEVR 138 (162)
T ss_dssp HHHHHHHHHHHHHHHHH--HCSEEHHHHHHHHTCC---CCSHHHHHHHTTSEEEE
T ss_pred cCccCHHHHHHHHHHHH--cCCcCHHHHHHHHCCC---HHHHHHHHHHCCCEEEc
Confidence 0 113444442 3689999999999999 77899999999999863
No 77
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=92.71 E-value=0.3 Score=38.65 Aligned_cols=54 Identities=17% Similarity=0.159 Sum_probs=44.7
Q ss_pred CChhHHHHHHHhhccCCCcccHHHHHHhcCCCHHHHHHHHHHHHHcCcEEEeCCC
Q psy6552 177 LSLDHSLVLQQVASKNEAHISVSVLNNELNWSTERAQHALDFMVQEGYAWIDTQS 231 (254)
Q Consensus 177 ls~D~~~il~l~~~~~~g~vt~~~l~~~l~ws~~ra~~~L~~l~~~G~lwvD~q~ 231 (254)
++.-|-.+|...... .+.+|+.+|++.+++++.-+...++.|++.|++-+...+
T Consensus 29 Lt~~q~~vL~~L~~~-~~~~~~~eLa~~l~~~~~tvs~~v~~Le~~GlV~R~~~~ 82 (151)
T 4aik_A 29 LTQTHWVTLYNINRL-PPEQSQIQLAKAIGIEQPSLVRTLDQLEEKGLITRHTSA 82 (151)
T ss_dssp CCHHHHHHHHHHHHS-CTTSCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEECS
T ss_pred CCHHHHHHHHHHHHc-CCCCcHHHHHHHHCcCHHHHHHHHHHHHhCCCeEeecCC
Confidence 666676676655432 567899999999999999999999999999999987664
No 78
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=92.69 E-value=0.27 Score=36.43 Aligned_cols=47 Identities=19% Similarity=0.114 Sum_probs=39.7
Q ss_pred HHHHHHHhhccCCCcccHHHHHHhcCCCHHHHHHHHHHHHHcCcEEEeCC
Q psy6552 181 HSLVLQQVASKNEAHISVSVLNNELNWSTERAQHALDFMVQEGYAWIDTQ 230 (254)
Q Consensus 181 ~~~il~l~~~~~~g~vt~~~l~~~l~ws~~ra~~~L~~l~~~G~lwvD~q 230 (254)
...|+.+.. .|.+|+.+|++.+|+++.-+...|..|++.|++-+...
T Consensus 23 r~~IL~~L~---~~~~~~~ela~~l~is~~tv~~~l~~L~~~gli~~~~~ 69 (114)
T 2oqg_A 23 RWEILTELG---RADQSASSLATRLPVSRQAIAKHLNALQACGLVESVKV 69 (114)
T ss_dssp HHHHHHHHH---HSCBCHHHHHHHSSSCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred HHHHHHHHH---cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeeEEec
Confidence 445666664 35699999999999999999999999999999988654
No 79
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=92.58 E-value=0.33 Score=39.67 Aligned_cols=55 Identities=9% Similarity=0.178 Sum_probs=46.1
Q ss_pred CChhHHHHHHHhhccCCCcccHHHHHHhcCCCHHHHHHHHHHHHHcCcEEEeCCC
Q psy6552 177 LSLDHSLVLQQVASKNEAHISVSVLNNELNWSTERAQHALDFMVQEGYAWIDTQS 231 (254)
Q Consensus 177 ls~D~~~il~l~~~~~~g~vt~~~l~~~l~ws~~ra~~~L~~l~~~G~lwvD~q~ 231 (254)
++.-|-.||..+.....|.+|+.+|++.+++++.-+...|..|++.|++-+....
T Consensus 39 lt~~q~~vL~~L~~~~~~~~t~~eLa~~l~is~~tvs~~l~~Le~~GlV~r~~~~ 93 (189)
T 3nqo_A 39 LTSRQYMTILSILHLPEEETTLNNIARKMGTSKQNINRLVANLEKNGYVDVIPSP 93 (189)
T ss_dssp SCHHHHHHHHHHHHSCGGGCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEECS
T ss_pred CCHHHHHHHHHHHhccCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeccCC
Confidence 6667777777665322578999999999999999999999999999999997654
No 80
>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP}
Probab=92.51 E-value=0.24 Score=37.66 Aligned_cols=54 Identities=15% Similarity=0.168 Sum_probs=43.0
Q ss_pred HHHHHHhhccCCCcccHHHHHHhcCCCHHHHHHHHHHHHHcCcEEEeCCCCCcccceec
Q psy6552 182 SLVLQQVASKNEAHISVSVLNNELNWSTERAQHALDFMVQEGYAWIDTQSPQEHLYWFP 240 (254)
Q Consensus 182 ~~il~l~~~~~~g~vt~~~l~~~l~ws~~ra~~~L~~l~~~G~lwvD~q~~~e~~yw~p 240 (254)
..|+.+.. .|.+|+.+|++.+|++..-+..+|..|++.|++-+... +...||..
T Consensus 21 ~~Il~~L~---~~~~~~~eLa~~l~is~~tvs~hL~~L~~~GlV~~~~~--gr~~~y~l 74 (118)
T 3f6o_A 21 RAVLGRLS---RGPATVSELAKPFDMALPSFMKHIHFLEDSGWIRTHKQ--GRVRTCAI 74 (118)
T ss_dssp HHHHHHHH---TCCEEHHHHHTTCCSCHHHHHHHHHHHHHTTSEEEEEE--TTEEEEEE
T ss_pred HHHHHHHH---hCCCCHHHHHHHhCcCHHHHHHHHHHHHHCCCeEEEec--CCEEEEEE
Confidence 34556555 36789999999999999999999999999999988765 34455543
No 81
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=92.45 E-value=0.18 Score=40.60 Aligned_cols=47 Identities=15% Similarity=0.191 Sum_probs=41.5
Q ss_pred hhHHHHHHHhhccCCCcccHHHHHHhcCCCHHHHHHHHHHHHHcCcEEE
Q psy6552 179 LDHSLVLQQVASKNEAHISVSVLNNELNWSTERAQHALDFMVQEGYAWI 227 (254)
Q Consensus 179 ~D~~~il~l~~~~~~g~vt~~~l~~~l~ws~~ra~~~L~~l~~~G~lwv 227 (254)
.-...|+.+.+ ..|.+|..+|++.+|.|..-+...|+.|++.|++.+
T Consensus 3 ~~d~~il~~L~--~~~~~s~~~la~~lg~s~~tv~~rl~~L~~~g~i~~ 49 (162)
T 3i4p_A 3 RLDRKILRILQ--EDSTLAVADLAKKVGLSTTPCWRRIQKMEEDGVIRR 49 (162)
T ss_dssp HHHHHHHHHHT--TCSCSCHHHHHHHHTCCHHHHHHHHHHHHHTTSSCC
T ss_pred HHHHHHHHHHH--HCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeee
Confidence 33457888888 568999999999999999999999999999999874
No 82
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=92.43 E-value=0.25 Score=39.50 Aligned_cols=50 Identities=14% Similarity=0.165 Sum_probs=43.5
Q ss_pred CCChhHHHHHHHhhccCCCcccHHHHHHhcCCCHHHHHHHHHHHHHcCcEEE
Q psy6552 176 ELSLDHSLVLQQVASKNEAHISVSVLNNELNWSTERAQHALDFMVQEGYAWI 227 (254)
Q Consensus 176 els~D~~~il~l~~~~~~g~vt~~~l~~~l~ws~~ra~~~L~~l~~~G~lwv 227 (254)
+++.-+..|+.+.+ ..|.+|..+|++.+|+|..-+...|..|++.|++-+
T Consensus 7 ~ld~~~~~il~~L~--~~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~ 56 (162)
T 2p5v_A 7 TLDKTDIKILQVLQ--ENGRLTNVELSERVALSPSPCLRRLKQLEDAGIVRQ 56 (162)
T ss_dssp CCCHHHHHHHHHHH--HCTTCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEE
T ss_pred CCCHHHHHHHHHHH--HcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEee
Confidence 36665678888887 357899999999999999999999999999999974
No 83
>2z99_A Putative uncharacterized protein; winged helix domain, cell cycle, cell division, chromosome partition, cytoplasm; 2.30A {Mycobacterium tuberculosis}
Probab=92.42 E-value=1.1 Score=38.63 Aligned_cols=109 Identities=10% Similarity=0.033 Sum_probs=77.5
Q ss_pred HHHHHhhhhhhhcCCceeHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHhhh----hCCCeEEEEeCCceEEEEccCC-
Q psy6552 101 QIVEVCLATNYKNGGLILLDELRTRLVKSRGKSLQHQDITNEDLLAAAKKLKI----FGNGFSIIPIGQGQYLVQSIPG- 175 (254)
Q Consensus 101 qive~c~~~r~~nGGii~L~dl~~~~nr~Rg~~~~~~~IS~~Di~rA~~~L~~----Lg~g~~l~~~~sg~~vv~s~p~- 175 (254)
.++|.++=. .|-=+++.+|-..+. ++++++..+++.|.. -+.|++|+.++ |..-+++.|.
T Consensus 18 ~~iEAlLf~---a~epvs~~~La~~l~-----------~~~~~v~~~l~~L~~~y~~~~rGiel~~v~-~gy~l~T~~e~ 82 (219)
T 2z99_A 18 RVLEALLLV---IDTPVTADALAAATE-----------QPVYRVAAKLQLMADELTGRDSGIDLRHTS-EGWRMYTRARF 82 (219)
T ss_dssp HHHHHHHHH---CSSCBCHHHHHHHHT-----------SCHHHHHHHHHHHHHHHHHTTCSEEEEEET-TEEEEEECGGG
T ss_pred HHHHHHHHH---cCCCCCHHHHHHHHC-----------cCHHHHHHHHHHHHHHHhhCCCCEEEEEEC-CEEEEEEcHHH
Confidence 345544432 233488888887652 588999999988843 37899999999 7778888772
Q ss_pred --------------CCChhHHHHHHHhhccCCCcccHHHHHHhcCCCHHHHHHHHHHHHHcCcEEEeC
Q psy6552 176 --------------ELSLDHSLVLQQVASKNEAHISVSVLNNELNWSTERAQHALDFMVQEGYAWIDT 229 (254)
Q Consensus 176 --------------els~D~~~il~l~~~~~~g~vt~~~l~~~l~ws~~ra~~~L~~l~~~G~lwvD~ 229 (254)
.+|.-...+|.++.. .+-||-.+|++..|.+. ...+..|++.|++..-.
T Consensus 83 ~~~v~~~~~~~~~~~Ls~aaLEtLaiIAy--~QPITR~eI~~irGv~~---~~~v~~Lle~gLI~e~G 145 (219)
T 2z99_A 83 APYVEKLLLDGARTKLTRAALETLAVVAY--RQPVTRARVSAVRGVNV---DAVMRTLLARGLITEVG 145 (219)
T ss_dssp HHHHHHHHHHHHSCCCCHHHHHHHHHHHH--HCSEEHHHHHHHHTSCC---HHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHhcccccCccCHHHHHHHHHHHH--cCCcCHHHHHHHHCCCH---HHHHHHHHHCCCEEEcc
Confidence 122111224444443 36899999999999997 57899999999998754
No 84
>4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor}
Probab=92.42 E-value=0.26 Score=38.66 Aligned_cols=55 Identities=13% Similarity=0.180 Sum_probs=45.2
Q ss_pred CChhHHHHHHHhhccCCCcccHHHHHHhcCCCHHHHHHHHHHHHHcCcEEEeCCC
Q psy6552 177 LSLDHSLVLQQVASKNEAHISVSVLNNELNWSTERAQHALDFMVQEGYAWIDTQS 231 (254)
Q Consensus 177 ls~D~~~il~l~~~~~~g~vt~~~l~~~l~ws~~ra~~~L~~l~~~G~lwvD~q~ 231 (254)
++.-|-.+|.+......|.+|+.+|++.+++++.-....++.|++.|++-+-..+
T Consensus 33 Lt~~q~~vL~~L~~~~~~~~t~~eLa~~l~~~~~tvs~~v~~Le~~Glv~r~~~~ 87 (147)
T 4b8x_A 33 LTFARYEALVLLTFSKSGELPMSKIGERLMVHPTSVTNTVDRLVRSGLVAKRPNP 87 (147)
T ss_dssp CCHHHHHHHHHHHTSGGGEEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECC
T ss_pred CCHHHHHHHHHHHHCCCCCcCHHHHHHHHCCCHHHHHHHHHHHHhCCCEEEeecC
Confidence 6666777766553222578999999999999999999999999999999987664
No 85
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=92.18 E-value=0.29 Score=38.54 Aligned_cols=49 Identities=14% Similarity=0.152 Sum_probs=42.2
Q ss_pred CChhHHHHHHHhhccCCCcccHHHHHHhcCCCHHHHHHHHHHHHHcCcEEE
Q psy6552 177 LSLDHSLVLQQVASKNEAHISVSVLNNELNWSTERAQHALDFMVQEGYAWI 227 (254)
Q Consensus 177 ls~D~~~il~l~~~~~~g~vt~~~l~~~l~ws~~ra~~~L~~l~~~G~lwv 227 (254)
++.-+..||.+.+ ..|.+|..+|++.+|+|+.-+...|..|++.|++-+
T Consensus 5 ld~~~~~iL~~L~--~~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~ 53 (150)
T 2w25_A 5 LDDIDRILVRELA--ADGRATLSELATRAGLSVSAVQSRVRRLESRGVVQG 53 (150)
T ss_dssp CCHHHHHHHHHHH--HCTTCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEE
T ss_pred cCHHHHHHHHHHH--HcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEE
Confidence 5555567888777 357899999999999999999999999999999964
No 86
>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A
Probab=92.14 E-value=0.37 Score=37.09 Aligned_cols=77 Identities=17% Similarity=0.203 Sum_probs=58.6
Q ss_pred CCCHHHHHHHHHHhhhhCCCeEEEEeCCceEEEEccCCCCChhHHHHHHHhhccCCCcccHHHHHHhcCCCHHHHHHHHH
Q psy6552 138 DITNEDLLAAAKKLKIFGNGFSIIPIGQGQYLVQSIPGELSLDHSLVLQQVASKNEAHISVSVLNNELNWSTERAQHALD 217 (254)
Q Consensus 138 ~IS~~Di~rA~~~L~~Lg~g~~l~~~~sg~~vv~s~p~els~D~~~il~l~~~~~~g~vt~~~l~~~l~ws~~ra~~~L~ 217 (254)
..+++++......++.|+.+ -...|+.+.. .|..|+.+|++.+|++..-...+|.
T Consensus 27 ~~~~~~~~~~~~~~kaL~~~----------------------~rl~IL~~L~---~~~~s~~ela~~lgis~stvs~~L~ 81 (122)
T 1r1t_A 27 AIAPEVAQSLAEFFAVLADP----------------------NRLRLLSLLA---RSELCVGDLAQAIGVSESAVSHQLR 81 (122)
T ss_dssp CCCHHHHHHHHHHHHHHCCH----------------------HHHHHHHHHT---TCCBCHHHHHHHHTCCHHHHHHHHH
T ss_pred CCCHhHHHHHHHHHHHhCCH----------------------HHHHHHHHHH---cCCCCHHHHHHHHCcCHHHHHHHHH
Confidence 45777888888888877622 2345666555 2568999999999999999999999
Q ss_pred HHHHcCcEEEeCCCCCcccceecc
Q psy6552 218 FMVQEGYAWIDTQSPQEHLYWFPS 241 (254)
Q Consensus 218 ~l~~~G~lwvD~q~~~e~~yw~p~ 241 (254)
.|++.|++-+... +...||.++
T Consensus 82 ~Le~~Glv~~~~~--gr~~~y~l~ 103 (122)
T 1r1t_A 82 SLRNLRLVSYRKQ--GRHVYYQLQ 103 (122)
T ss_dssp HHHHTTSEEEEEE--TTEEEEEES
T ss_pred HHHHCCCeEEEEe--CCEEEEEEC
Confidence 9999999998765 345555543
No 87
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=92.03 E-value=0.25 Score=38.75 Aligned_cols=48 Identities=10% Similarity=0.063 Sum_probs=41.5
Q ss_pred ChhHHHHHHHhhccCCCcccHHHHHHhcCCCHHHHHHHHHHHHHcCcEEE
Q psy6552 178 SLDHSLVLQQVASKNEAHISVSVLNNELNWSTERAQHALDFMVQEGYAWI 227 (254)
Q Consensus 178 s~D~~~il~l~~~~~~g~vt~~~l~~~l~ws~~ra~~~L~~l~~~G~lwv 227 (254)
+.-+..|+.+.+ ..|.+|..+|++.+|.|+.-+...|..|++.|++-+
T Consensus 2 d~~~~~il~~L~--~~~~~~~~ela~~lg~s~~tv~~~l~~L~~~G~i~~ 49 (150)
T 2pn6_A 2 DEIDLRILKILQ--YNAKYSLDEIAREIRIPKATLSYRIKKLEKDGVIKG 49 (150)
T ss_dssp CHHHHHHHHHHT--TCTTSCHHHHHHHHTSCHHHHHHHHHHHHHTTSSCC
T ss_pred ChHHHHHHHHHH--HcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEE
Confidence 334567788887 468899999999999999999999999999999875
No 88
>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}
Probab=92.02 E-value=0.23 Score=39.42 Aligned_cols=56 Identities=14% Similarity=0.137 Sum_probs=43.5
Q ss_pred CCChhHHHHHHHhhccCCCcccHHHHHHhcCCCHHHHHHHHHHHHHcCcEEEeCCC
Q psy6552 176 ELSLDHSLVLQQVASKNEAHISVSVLNNELNWSTERAQHALDFMVQEGYAWIDTQS 231 (254)
Q Consensus 176 els~D~~~il~l~~~~~~g~vt~~~l~~~l~ws~~ra~~~L~~l~~~G~lwvD~q~ 231 (254)
.++.-|-.||..+...+.+.+|+.+|++.+++++.-+...|+.|++.|++-+....
T Consensus 43 glt~~q~~vL~~l~~~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~~~ 98 (168)
T 3u2r_A 43 ELSAQQYNTLRLLRSVHPEGMATLQIADRLISRAPDITRLIDRLDDRGLVLRTRKP 98 (168)
T ss_dssp TCCHHHHHHHHHHHHHTTSCEEHHHHHHHC---CTHHHHHHHHHHHTTSEEEEEET
T ss_pred CCCHHHHHHHHHHHhcCCCCcCHHHHHHHHCCChhhHHHHHHHHHHCCCEeecCCC
Confidence 36777877877766432368999999999999999999999999999999987553
No 89
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=91.96 E-value=0.44 Score=35.44 Aligned_cols=46 Identities=15% Similarity=0.286 Sum_probs=37.7
Q ss_pred HHHHHHhhccCCCcccHHHHHHhcCCCHHHHHHHHHHHHHcCcEEEe
Q psy6552 182 SLVLQQVASKNEAHISVSVLNNELNWSTERAQHALDFMVQEGYAWID 228 (254)
Q Consensus 182 ~~il~l~~~~~~g~vt~~~l~~~l~ws~~ra~~~L~~l~~~G~lwvD 228 (254)
..|+..... .+..+|..+|++.+|.|..-+.++|..|+++|++-..
T Consensus 21 l~Il~~l~~-~g~~~s~~eLa~~lgvs~~tV~~~L~~L~~~GlV~~~ 66 (110)
T 1q1h_A 21 IDVLRILLD-KGTEMTDEEIANQLNIKVNDVRKKLNLLEEQGFVSYR 66 (110)
T ss_dssp HHHHHHHHH-HCSCBCHHHHHHTTTSCHHHHHHHHHHHHHHTSCEEE
T ss_pred HHHHHHHHH-cCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 345544421 2337999999999999999999999999999999887
No 90
>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=91.92 E-value=0.2 Score=39.18 Aligned_cols=54 Identities=19% Similarity=0.247 Sum_probs=44.0
Q ss_pred CChhHHHHHHHhhccCCCcccHHHHHHhcCCCHHHHHHHHHHHHHcCcEEEeCCC
Q psy6552 177 LSLDHSLVLQQVASKNEAHISVSVLNNELNWSTERAQHALDFMVQEGYAWIDTQS 231 (254)
Q Consensus 177 ls~D~~~il~l~~~~~~g~vt~~~l~~~l~ws~~ra~~~L~~l~~~G~lwvD~q~ 231 (254)
++..+-.||..... ..+.+|+.+|++.+++++.-+...|..|++.|++-+....
T Consensus 45 l~~~~~~iL~~L~~-~~~~~~~~ela~~l~i~~~tvs~~l~~Le~~Gli~r~~~~ 98 (160)
T 3boq_A 45 LSLAKFDAMAQLAR-NPDGLSMGKLSGALKVTNGNVSGLVNRLIKDGMVVKAMSA 98 (160)
T ss_dssp CCHHHHHHHHHHHH-CTTCEEHHHHHHHCSSCCSCHHHHHHHHHHHTSEEEC---
T ss_pred CCHHHHHHHHHHHH-cCCCCCHHHHHHHHCCChhhHHHHHHHHHHCCCEEeecCC
Confidence 66667778777722 3578999999999999999999999999999999996543
No 91
>1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial antibiotic resistance, MECI protein, transcriptional regulatory element; 2.4A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1sax_A 1sd7_A 2d45_A 1sd6_A
Probab=91.91 E-value=0.19 Score=37.86 Aligned_cols=53 Identities=15% Similarity=0.228 Sum_probs=45.6
Q ss_pred CCChhHHHHHHHhhccCCCcccHHHHHHhcC----CCHHHHHHHHHHHHHcCcEEEeCC
Q psy6552 176 ELSLDHSLVLQQVASKNEAHISVSVLNNELN----WSTERAQHALDFMVQEGYAWIDTQ 230 (254)
Q Consensus 176 els~D~~~il~l~~~~~~g~vt~~~l~~~l~----ws~~ra~~~L~~l~~~G~lwvD~q 230 (254)
.++.-+..||..... .|.+|+.+|++.++ |++.-+...|+.|++.|++-+...
T Consensus 7 ~lt~~~~~vL~~l~~--~~~~t~~ela~~l~~~~~~s~~tv~~~l~~L~~~Glv~r~~~ 63 (123)
T 1okr_A 7 EISSAEWEVMNIIWM--KKYASANNIIEEIQMQKDWSPKTIRTLITRLYKKGFIDRKKD 63 (123)
T ss_dssp CCCHHHHHHHHHHHH--HSSEEHHHHHHHHHHHCCCCHHHHHHHHHHHHHHTSEEEEEE
T ss_pred cCCHHHHHHHHHHHh--CCCcCHHHHHHHHhccCCCcHhhHHHHHHHHHHCCCeEEEec
Confidence 477777888887763 47899999999999 999999999999999999998754
No 92
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=91.85 E-value=0.2 Score=38.80 Aligned_cols=49 Identities=10% Similarity=0.195 Sum_probs=41.3
Q ss_pred CChhHHHHHHHhhccCCCcccHHHHHHhcCCCHHHHHHHHHHHHHcCcEEE
Q psy6552 177 LSLDHSLVLQQVASKNEAHISVSVLNNELNWSTERAQHALDFMVQEGYAWI 227 (254)
Q Consensus 177 ls~D~~~il~l~~~~~~g~vt~~~l~~~l~ws~~ra~~~L~~l~~~G~lwv 227 (254)
++.-+..|+...+ ..|.+|..+|++.+|.|..-+...|..|++.|++-+
T Consensus 2 ld~~~~~il~~L~--~~~~~~~~ela~~lg~s~~tv~~~l~~L~~~G~i~~ 50 (141)
T 1i1g_A 2 IDERDKIILEILE--KDARTPFTEIAKKLGISETAVRKRVKALEEKGIIEG 50 (141)
T ss_dssp CCSHHHHHHHHHH--HCTTCCHHHHHHHHTSCHHHHHHHHHHHHHHTSSCC
T ss_pred CCHHHHHHHHHHH--HcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEec
Confidence 4444667777776 357899999999999999999999999999999853
No 93
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=91.74 E-value=0.43 Score=37.16 Aligned_cols=52 Identities=10% Similarity=0.075 Sum_probs=44.5
Q ss_pred CChhHHHHHHHhhccCCCcccHHHHHHhcCCCHHHHHHHHHHHHHcCcEEEeCC
Q psy6552 177 LSLDHSLVLQQVASKNEAHISVSVLNNELNWSTERAQHALDFMVQEGYAWIDTQ 230 (254)
Q Consensus 177 ls~D~~~il~l~~~~~~g~vt~~~l~~~l~ws~~ra~~~L~~l~~~G~lwvD~q 230 (254)
++.-+-.||..+.. .|.+|+.+|++.+++++.-+...|..|++.|++-+...
T Consensus 42 lt~~~~~iL~~l~~--~~~~t~~ela~~l~is~~tvs~~l~~Le~~Gli~r~~~ 93 (154)
T 2eth_A 42 MKTTELYAFLYVAL--FGPKKMKEIAEFLSTTKSNVTNVVDSLEKRGLVVREMD 93 (154)
T ss_dssp SBHHHHHHHHHHHH--HCCBCHHHHHHHTTSCHHHHHHHHHHHHHTTSEEEEEC
T ss_pred CCHHHHHHHHHHHH--cCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeeCC
Confidence 66667778777663 36799999999999999999999999999999998654
No 94
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=91.53 E-value=0.54 Score=33.92 Aligned_cols=52 Identities=17% Similarity=0.201 Sum_probs=42.0
Q ss_pred CChhHHHHH-HHhhccCCCcccHHHHHHhcCCCHHHHHHHHHHHHHcCcEEEeCC
Q psy6552 177 LSLDHSLVL-QQVASKNEAHISVSVLNNELNWSTERAQHALDFMVQEGYAWIDTQ 230 (254)
Q Consensus 177 ls~D~~~il-~l~~~~~~g~vt~~~l~~~l~ws~~ra~~~L~~l~~~G~lwvD~q 230 (254)
++..+-.++ .+.. ..+.+|+.+|++.+|.++.-+...|..|++.|++-+...
T Consensus 19 l~~~~~~~l~~l~~--~~~~~t~~ela~~l~is~~tv~~~l~~L~~~g~v~~~~~ 71 (109)
T 2d1h_A 19 ITDTDVAVLLKMVE--IEKPITSEELADIFKLSKTTVENSLKKLIELGLVVRTKT 71 (109)
T ss_dssp CCHHHHHHHHHHHH--HCSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEC
T ss_pred CCHHHHHHHHHHHH--cCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEeecc
Confidence 554454444 4444 257899999999999999999999999999999998754
No 95
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=91.50 E-value=0.28 Score=38.78 Aligned_cols=49 Identities=4% Similarity=0.069 Sum_probs=42.9
Q ss_pred CChhHHHHHHHhhccCCCcccHHHHHHhcCCCHHHHHHHHHHHHHcCcEEE
Q psy6552 177 LSLDHSLVLQQVASKNEAHISVSVLNNELNWSTERAQHALDFMVQEGYAWI 227 (254)
Q Consensus 177 ls~D~~~il~l~~~~~~g~vt~~~l~~~l~ws~~ra~~~L~~l~~~G~lwv 227 (254)
++.-+..|+.+.+. .|.+|..+|++.+|.|..-+...|..|++.|++-+
T Consensus 5 ld~~~~~il~~L~~--~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~ 53 (151)
T 2cyy_A 5 LDEIDKKIIKILQN--DGKAPLREISKITGLAESTIHERIRKLRESGVIKK 53 (151)
T ss_dssp CCHHHHHHHHHHHH--CTTCCHHHHHHHHCSCHHHHHHHHHHHHHHTSSCC
T ss_pred cCHHHHHHHHHHHH--cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEE
Confidence 66556688888873 57899999999999999999999999999999864
No 96
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}
Probab=91.49 E-value=0.33 Score=37.21 Aligned_cols=52 Identities=21% Similarity=0.160 Sum_probs=43.7
Q ss_pred CChhHHHHHHHhhccCCCcccHHHHHHhcCCCHHHHHHHHHHHHHcCcEEEeCCC
Q psy6552 177 LSLDHSLVLQQVASKNEAHISVSVLNNELNWSTERAQHALDFMVQEGYAWIDTQS 231 (254)
Q Consensus 177 ls~D~~~il~l~~~~~~g~vt~~~l~~~l~ws~~ra~~~L~~l~~~G~lwvD~q~ 231 (254)
++..+-.||..+.. .|. |+.+|++.+++++.-+...|..|++.|++-+...+
T Consensus 35 lt~~~~~iL~~l~~--~~~-~~~~la~~l~~~~~tvs~~l~~Le~~Glv~r~~~~ 86 (144)
T 3f3x_A 35 LSYLDFSILKATSE--EPR-SMVYLANRYFVTQSAITAAVDKLEAKGLVRRIRDS 86 (144)
T ss_dssp CCHHHHHHHHHHHH--SCE-EHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEET
T ss_pred CCHHHHHHHHHHHH--CCC-CHHHHHHHHCCChhHHHHHHHHHHHCCCEEeccCC
Confidence 66667778777663 345 99999999999999999999999999999986543
No 97
>2jsc_A Transcriptional regulator RV1994C/MT2050; cadmium, transcriptional repressor, solution structure, STRU genomics; NMR {Mycobacterium tuberculosis}
Probab=91.31 E-value=0.3 Score=37.19 Aligned_cols=55 Identities=9% Similarity=0.087 Sum_probs=43.6
Q ss_pred HHHHHHhhccCCCcccHHHHHHhcCCCHHHHHHHHHHHHHcCcEEEeCCCCCcccceecc
Q psy6552 182 SLVLQQVASKNEAHISVSVLNNELNWSTERAQHALDFMVQEGYAWIDTQSPQEHLYWFPS 241 (254)
Q Consensus 182 ~~il~l~~~~~~g~vt~~~l~~~l~ws~~ra~~~L~~l~~~G~lwvD~q~~~e~~yw~p~ 241 (254)
..|+.+.. .|..|+.+|++.+|+++.-...+|..|++.|++-+... +...||.++
T Consensus 24 ~~IL~~L~---~~~~~~~eLa~~lgis~stvs~~L~~L~~~GlV~~~~~--gr~~~y~l~ 78 (118)
T 2jsc_A 24 CRILVALL---DGVCYPGQLAAHLGLTRSNVSNHLSCLRGCGLVVATYE--GRQVRYALA 78 (118)
T ss_dssp HHHHHHHH---TTCCSTTTHHHHHSSCHHHHHHHHHHHTTTTSEEEEEC--SSSEEEEES
T ss_pred HHHHHHHH---cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCceEEEEE--CCEEEEEEC
Confidence 45666665 25689999999999999999999999999999988755 345565544
No 98
>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}
Probab=91.06 E-value=0.3 Score=37.56 Aligned_cols=50 Identities=12% Similarity=0.062 Sum_probs=43.0
Q ss_pred CChhHHHHHHHhhccCCCcccHHHHHHhc--CCCHHHHHHHHHHHHHcCcEEEe
Q psy6552 177 LSLDHSLVLQQVASKNEAHISVSVLNNEL--NWSTERAQHALDFMVQEGYAWID 228 (254)
Q Consensus 177 ls~D~~~il~l~~~~~~g~vt~~~l~~~l--~ws~~ra~~~L~~l~~~G~lwvD 228 (254)
++.-...||++... .|..|+.+|++.+ |+|..-+...|..|++.|++-.-
T Consensus 11 md~~d~~IL~~L~~--~g~~s~~eLA~~l~~giS~~aVs~rL~~Le~~GLV~~~ 62 (111)
T 3b73_A 11 MTIWDDRILEIIHE--EGNGSPKELEDRDEIRISKSSVSRRLKKLADHDLLQPL 62 (111)
T ss_dssp CCHHHHHHHHHHHH--HSCBCHHHHHTSTTCCSCHHHHHHHHHHHHHTTSEEEC
T ss_pred cCHHHHHHHHHHHH--cCCCCHHHHHHHHhcCCCHHHHHHHHHHHHHCCCEEec
Confidence 44445678888873 4799999999999 99999999999999999999873
No 99
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=91.05 E-value=0.28 Score=38.09 Aligned_cols=48 Identities=13% Similarity=0.192 Sum_probs=42.2
Q ss_pred CChhHHHHHHHhhccCCCcccHHHHHHhcCCCHHHHHHHHHHHHHcCcEEE
Q psy6552 177 LSLDHSLVLQQVASKNEAHISVSVLNNELNWSTERAQHALDFMVQEGYAWI 227 (254)
Q Consensus 177 ls~D~~~il~l~~~~~~g~vt~~~l~~~l~ws~~ra~~~L~~l~~~G~lwv 227 (254)
++.-|-.+|... . .|.+|+.+|++.+++++.-+...|+.|++.|++-+
T Consensus 36 lt~~q~~iL~~l-~--~~~~t~~eLa~~l~~~~~~vs~~l~~Le~~Glv~r 83 (151)
T 3kp7_A 36 ISAEQSHVLNML-S--IEALTVGQITEKQGVNKAAVSRRVKKLLNAELVKL 83 (151)
T ss_dssp CCHHHHHHHHHH-H--HSCBCHHHHHHHHCSCSSHHHHHHHHHHHTTSEEC
T ss_pred CCHHHHHHHHHH-H--cCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEe
Confidence 566677777766 3 47899999999999999999999999999999998
No 100
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=91.03 E-value=0.5 Score=33.85 Aligned_cols=47 Identities=6% Similarity=0.079 Sum_probs=38.9
Q ss_pred HHHHHHHhhccCCCcccHHHHHHhcCCCHHHHHHHHHHHHHcCcEEEeC
Q psy6552 181 HSLVLQQVASKNEAHISVSVLNNELNWSTERAQHALDFMVQEGYAWIDT 229 (254)
Q Consensus 181 ~~~il~l~~~~~~g~vt~~~l~~~l~ws~~ra~~~L~~l~~~G~lwvD~ 229 (254)
+..|+..... .|.+|..+|++.+|+++.-....|..|++.|++-+..
T Consensus 18 ~~~iL~~L~~--~~~~~~~ela~~l~is~~tvs~~l~~L~~~gli~~~~ 64 (100)
T 1ub9_A 18 RLGIMIFLLP--RRKAPFSQIQKVLDLTPGNLDSHIRVLERNGLVKTYK 64 (100)
T ss_dssp HHHHHHHHHH--HSEEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHh--cCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEe
Confidence 4456665542 3679999999999999999999999999999998643
No 101
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=91.00 E-value=0.23 Score=38.42 Aligned_cols=55 Identities=13% Similarity=0.099 Sum_probs=38.0
Q ss_pred CChhHHHHHHHhhccCCCcccHHHHHHhcCCCHHHHHHHHHHHHHcCcEEEeCCC
Q psy6552 177 LSLDHSLVLQQVASKNEAHISVSVLNNELNWSTERAQHALDFMVQEGYAWIDTQS 231 (254)
Q Consensus 177 ls~D~~~il~l~~~~~~g~vt~~~l~~~l~ws~~ra~~~L~~l~~~G~lwvD~q~ 231 (254)
++.-|-.||........|.+|+.+|++.+++++.-+...|+.|++.|++-+...+
T Consensus 39 lt~~q~~vL~~l~~~~~~~~t~~eLa~~l~~~~~~vs~~l~~L~~~Glv~r~~~~ 93 (148)
T 3jw4_A 39 LNSQQGRMIGYIYENQESGIIQKDLAQFFGRRGASITSMLQGLEKKGYIERRIPE 93 (148)
T ss_dssp CCHHHHHHHHHHHHHTTTCCCHHHHHHC------CHHHHHHHHHHTTSBCCC---
T ss_pred CCHHHHHHHHHHHhCCCCCCCHHHHHHHHCCChhHHHHHHHHHHHCCCEEeeCCC
Confidence 6666777776665332378999999999999999999999999999999886543
No 102
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=90.99 E-value=0.26 Score=39.08 Aligned_cols=52 Identities=17% Similarity=0.305 Sum_probs=41.3
Q ss_pred CChhHHHH-HHHhhcc--CCCcccHHHHHHhcCCCHHHHHHHHHHHHHcCcEEEe
Q psy6552 177 LSLDHSLV-LQQVASK--NEAHISVSVLNNELNWSTERAQHALDFMVQEGYAWID 228 (254)
Q Consensus 177 ls~D~~~i-l~l~~~~--~~g~vt~~~l~~~l~ws~~ra~~~L~~l~~~G~lwvD 228 (254)
+|.++..+ +.+.... +..+.|+++|++.+|+++.-+...|..|++.|++-|.
T Consensus 30 Ls~~E~~lLl~L~~~~~~g~~~ps~~~LA~~~~~s~~~v~~~L~~L~~KGlI~i~ 84 (135)
T 2v79_A 30 LNETELILLLKIKMHLEKGSYFPTPNQLQEGMSISVEECTNRLRMFIQKGFLFIE 84 (135)
T ss_dssp CCHHHHHHHHHHHHHHTTTCCSCCHHHHHTTSSSCHHHHHHHHHHHHHHTSCEEE
T ss_pred CCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 67666544 3333321 2468999999999999999999999999999999993
No 103
>2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, STR genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} SCOP: a.4.5.28
Probab=90.90 E-value=0.38 Score=40.16 Aligned_cols=53 Identities=13% Similarity=0.066 Sum_probs=45.3
Q ss_pred CChhHHHHHHHhhccCCCcccHHHHHHhcCCCHHHHHHHHHHHHHcCcEEEeCCC
Q psy6552 177 LSLDHSLVLQQVASKNEAHISVSVLNNELNWSTERAQHALDFMVQEGYAWIDTQS 231 (254)
Q Consensus 177 ls~D~~~il~l~~~~~~g~vt~~~l~~~l~ws~~ra~~~L~~l~~~G~lwvD~q~ 231 (254)
++.-|-.||..+.. .|.+|+.+|++.+++++.-+...|+.|++.|++-+...+
T Consensus 46 Lt~~q~~iL~~L~~--~~~~t~~eLa~~l~i~~stvs~~l~~Le~~GlV~r~~~~ 98 (207)
T 2fxa_A 46 LNINEHHILWIAYQ--LNGASISEIAKFGVMHVSTAFNFSKKLEERGYLRFSKRL 98 (207)
T ss_dssp CCHHHHHHHHHHHH--HTSEEHHHHHHHTTCCHHHHHHHHHHHHHHTSEEEECC-
T ss_pred CCHHHHHHHHHHHH--CCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEecCC
Confidence 66667778777663 368999999999999999999999999999999997654
No 104
>2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis}
Probab=90.75 E-value=0.47 Score=35.63 Aligned_cols=78 Identities=14% Similarity=0.207 Sum_probs=60.1
Q ss_pred CCCCHHHHHHHHHHhhhhCCCeEEEEeCCceEEEEccCCCCChhHHHHHHHhhccCCCcccHHHHHHhcCCCHHHHHHHH
Q psy6552 137 QDITNEDLLAAAKKLKIFGNGFSIIPIGQGQYLVQSIPGELSLDHSLVLQQVASKNEAHISVSVLNNELNWSTERAQHAL 216 (254)
Q Consensus 137 ~~IS~~Di~rA~~~L~~Lg~g~~l~~~~sg~~vv~s~p~els~D~~~il~l~~~~~~g~vt~~~l~~~l~ws~~ra~~~L 216 (254)
..++++++.+....++.|+. ..+..|+.+.. . +..|..+|++.+|++..-+...|
T Consensus 12 ~~~~~~~~~~~~~~~~~l~~----------------------~~~~~il~~L~--~-~~~s~~ela~~l~is~stvsr~l 66 (119)
T 2lkp_A 12 APLDSQAAAQVASTLQALAT----------------------PSRLMILTQLR--N-GPLPVTDLAEAIGMEQSAVSHQL 66 (119)
T ss_dssp SCCHHHHHHHHHHHHHHHCC----------------------HHHHHHHHHHH--H-CCCCHHHHHHHHSSCHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHhCC----------------------HHHHHHHHHHH--H-CCCCHHHHHHHHCcCHHHHHHHH
Confidence 56778888888888887652 23556666665 2 56899999999999999999999
Q ss_pred HHHHHcCcEEEeCCCCCcccceecc
Q psy6552 217 DFMVQEGYAWIDTQSPQEHLYWFPS 241 (254)
Q Consensus 217 ~~l~~~G~lwvD~q~~~e~~yw~p~ 241 (254)
..|++.|++-++.. +...||.+.
T Consensus 67 ~~Le~~Glv~~~~~--~r~~~~~~~ 89 (119)
T 2lkp_A 67 RVLRNLGLVVGDRA--GRSIVYSLY 89 (119)
T ss_dssp HHHHHHCSEEEEEE--TTEEEEEES
T ss_pred HHHHHCCCEEEEec--CCEEEEEEc
Confidence 99999999988754 344555443
No 105
>1lva_A Selenocysteine-specific elongation factor; winged-helix, translation; 2.12A {Moorella thermoacetica} SCOP: a.4.5.35 a.4.5.35 a.4.5.35 a.4.5.35 PDB: 2uwm_A 2ply_A 1wsu_A
Probab=90.62 E-value=7.7 Score=33.43 Aligned_cols=170 Identities=14% Similarity=0.168 Sum_probs=102.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhh-------hhh------cCHH-HHHHHHHHHHHcCCCcccCCCcccccc----ccchh
Q psy6552 33 EQLSQHLNTFRDKLESFASEYKN-------EIK------KDAQ-FRRHFQEMCASIGVDPLASRKGFWSLL----GMGDF 94 (254)
Q Consensus 33 ~~L~~ql~~fk~~L~~FA~kh~~-------~I~------~dp~-fr~~f~~mc~~lGVdPl~s~kg~w~~l----g~gdf 94 (254)
+...++.+...+.|..|-++|.. +++ -++. |..-+..+|.. |. +....++++.- ....-
T Consensus 62 ~~~~~~~~~l~~~L~~~H~~~P~~~G~~~~~L~~~~~~~~~~~l~~~ll~~l~~~-g~--l~~~~~~v~l~~h~~~~~~~ 138 (258)
T 1lva_A 62 ERYQAWWQAVTRALEEFHSRYPLRPGLAREELRSRYFSRLPARVYQALLEEWSRE-GR--LQLAANTVALAGFTPSFSET 138 (258)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTSSCEEHHHHHHHHCTTSCHHHHHHHHHHHHHT-TS--EEEETTEEEETTCCCCCCHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCccCCCHHHHHHhccccCCHHHHHHHHHHHHHC-CC--EEecCCEEeCCCCccCCCHH
Confidence 34444455566778888888842 332 1222 22122223222 32 33333444322 23456
Q ss_pred HHHHHHHHHHHhhhhhhhcCCcee--HHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHhhhhCCCeEEEEeCCceEEEEc
Q psy6552 95 YYELSVQIVEVCLATNYKNGGLIL--LDELRTRLVKSRGKSLQHQDITNEDLLAAAKKLKIFGNGFSIIPIGQGQYLVQS 172 (254)
Q Consensus 95 y~eLavqive~c~~~r~~nGGii~--L~dl~~~~nr~Rg~~~~~~~IS~~Di~rA~~~L~~Lg~g~~l~~~~sg~~vv~s 172 (254)
+..+..+|.+.+.+ +|+-+ +.|+... -.+.++++...++.|-..|. |+.+. +..|+..
T Consensus 139 ~~~~~~~i~~~~~~-----~g~~pp~~~dl~~~-----------l~~~~~~~~~~l~~l~~~g~---lv~l~-~~~~~~~ 198 (258)
T 1lva_A 139 QKKLLKDLEDKYRV-----SRWQPPSFKEVAGS-----------FNLDPSELEELLHYLVREGV---LVKIN-DEFYWHR 198 (258)
T ss_dssp HHHHHHHHHHHHHH-----HTTSCCBHHHHHHH-----------TTCCHHHHHHHHHHHHHTTS---EEESS-SSBEEEH
T ss_pred HHHHHHHHHHHHHH-----CCCCCCCHHHHHhH-----------hCCCHHHHHHHHHHHHHCCC---EEEec-CCeEEcH
Confidence 66677777766632 55433 4454432 24678888888888887773 55666 3334433
Q ss_pred cCCCCChhHHHHHHHhhccCCCcccHHHHHHhcCCCHHHHHHHHHHHHHcCcEEEeCC
Q psy6552 173 IPGELSLDHSLVLQQVASKNEAHISVSVLNNELNWSTERAQHALDFMVQEGYAWIDTQ 230 (254)
Q Consensus 173 ~p~els~D~~~il~l~~~~~~g~vt~~~l~~~l~ws~~ra~~~L~~l~~~G~lwvD~q 230 (254)
.. +..--..+.+++ . .|.+|+.+..+.+|.|.-.|...|+.+-+.|+..+...
T Consensus 199 ~~--~~~~~~~l~~~~-~--~~~it~a~~Rd~lg~SRK~aIplLE~~Dr~g~TrR~gd 251 (258)
T 1lva_A 199 QA--LGEAREVIKNLA-S--TGPFGLAEARDALGSSRKYVLPLLEYLDQVKFTRRVGD 251 (258)
T ss_dssp HH--HHHHHHHHHHHH-T--TSCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETT
T ss_pred HH--HHHHHHHHHHHH-h--cCCcCHHHHHHHhCCcHHHHHHHHHHHhhcCceeeeCC
Confidence 32 332234455555 3 48999999999999999999999999999999999854
No 106
>2yu3_A DNA-directed RNA polymerase III 39 kDa polypeptide F variant; winged helix domain, RNA polymerase III C39 subunit, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=90.59 E-value=0.67 Score=34.78 Aligned_cols=55 Identities=11% Similarity=-0.003 Sum_probs=47.8
Q ss_pred CCCChhHHHHHHHhhccCCCcccHHHHHHhcCCCHHHHHHHHHHHHHcCcEEEeC
Q psy6552 175 GELSLDHSLVLQQVASKNEAHISVSVLNNELNWSTERAQHALDFMVQEGYAWIDT 229 (254)
Q Consensus 175 ~els~D~~~il~l~~~~~~g~vt~~~l~~~l~ws~~ra~~~L~~l~~~G~lwvD~ 229 (254)
..++.++..|+.++++....+|+..+|+...+.+.......|..|+..|++=.=.
T Consensus 33 ~~Lt~~E~lVy~~I~~aGn~GIw~kdL~~~tnL~~~~vtkiLK~LE~k~lIK~Vk 87 (95)
T 2yu3_A 33 KGSDNQEKLVYQIIEDAGNKGIWSRDVRYKSNLPLTEINKILKNLESKKLIKAVK 87 (95)
T ss_dssp CSCSHHHHHHHHHHHHHTTSCEEHHHHHHHHTCCHHHHHHHHHHHHHHTSEEEEC
T ss_pred cCCCHHHHHHHHHHHHhCCCCCCHHHHHHHhCCCHHHHHHHHHHHHhCCCEEEec
Confidence 4688889999999986545679999999999999999999999999999986533
No 107
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=90.54 E-value=0.58 Score=35.88 Aligned_cols=51 Identities=10% Similarity=0.091 Sum_probs=41.0
Q ss_pred CChhHHHHHHH----hhccCCCcccHHHHHHhcCCCHHHHHHHHHHHHHcCcEEEeC
Q psy6552 177 LSLDHSLVLQQ----VASKNEAHISVSVLNNELNWSTERAQHALDFMVQEGYAWIDT 229 (254)
Q Consensus 177 ls~D~~~il~l----~~~~~~g~vt~~~l~~~l~ws~~ra~~~L~~l~~~G~lwvD~ 229 (254)
++.-+..+|.. ++ ..+.+|..+|++.+|+++.-+...|..|++.|++-++.
T Consensus 11 lt~~~~~~L~~l~~l~~--~~~~~s~~ela~~l~is~~tv~~~l~~Le~~Gli~r~~ 65 (139)
T 2x4h_A 11 LSRREFSYLLTIKRYND--SGEGAKINRIAKDLKIAPSSVFEEVSHLEEKGLVKKKE 65 (139)
T ss_dssp CCHHHHHHHHHHHHHHT--TTSCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEET
T ss_pred cCHHHHHHHHHHHHHHh--cCCCcCHHHHHHHhCCChHHHHHHHHHHHHCCCEEecC
Confidence 45444444433 33 35789999999999999999999999999999999875
No 108
>2xzm_8 RPS25E,; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_8
Probab=90.25 E-value=0.27 Score=39.58 Aligned_cols=47 Identities=13% Similarity=0.109 Sum_probs=37.2
Q ss_pred hHHHHHHHhhcc-CC-CcccHHHHHHhcCCCHHHHHHHHHHHHHcCcEE
Q psy6552 180 DHSLVLQQVASK-NE-AHISVSVLNNELNWSTERAQHALDFMVQEGYAW 226 (254)
Q Consensus 180 D~~~il~l~~~~-~~-g~vt~~~l~~~l~ws~~ra~~~L~~l~~~G~lw 226 (254)
|..+.=.+..+- .. .+||++.|++.|+++..+|+.+|++|+..|++-
T Consensus 46 Dk~tydKL~KEVpk~gKlITpsvlseRlkI~gSLARkaLreL~~kGlIk 94 (143)
T 2xzm_8 46 EKKNVESIINNPSKVGKVLTVSTVVEKLKVNGSLARQLMRTMADRKLVE 94 (143)
T ss_dssp CHHHHHHHHTCCTTSCSEECHHHHHHHHCBCHHHHHHHHHHHHHTTSEE
T ss_pred cHHHHHHHHHHhcccceeecHHHHHHHhcchHHHHHHHHHHHHHCCCEE
Confidence 444444444321 24 689999999999999999999999999999985
No 109
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=90.16 E-value=0.4 Score=39.11 Aligned_cols=50 Identities=4% Similarity=0.064 Sum_probs=43.4
Q ss_pred CCChhHHHHHHHhhccCCCcccHHHHHHhcCCCHHHHHHHHHHHHHcCcEEE
Q psy6552 176 ELSLDHSLVLQQVASKNEAHISVSVLNNELNWSTERAQHALDFMVQEGYAWI 227 (254)
Q Consensus 176 els~D~~~il~l~~~~~~g~vt~~~l~~~l~ws~~ra~~~L~~l~~~G~lwv 227 (254)
.++.-+..||.+.+. .|.+|..+|++.+|.|..-+...|..|++.|++-+
T Consensus 24 ~ld~~d~~IL~~L~~--~~~~s~~eLA~~lglS~~tv~~rl~~L~~~G~I~~ 73 (171)
T 2e1c_A 24 PLDEIDKKIIKILQN--DGKAPLREISKITGLAESTIHERIRKLRESGVIKK 73 (171)
T ss_dssp CCCHHHHHHHHHHHH--CTTCCHHHHHHHHTSCHHHHHHHHHHHHHTTSSCC
T ss_pred CCCHHHHHHHHHHHH--cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEe
Confidence 366556788888883 57899999999999999999999999999999864
No 110
>2vxz_A Pyrsv_GP04; viral protein, SSPF, ORF165A; 1.7A {Pyrobaculum spherical virus}
Probab=89.99 E-value=0.47 Score=38.74 Aligned_cols=54 Identities=17% Similarity=0.112 Sum_probs=46.5
Q ss_pred HHHHHHhhccCCCcccHHHHHHhcCCCHHHHHHHHHHHHHcCcEEEeCCCCCcccceec
Q psy6552 182 SLVLQQVASKNEAHISVSVLNNELNWSTERAQHALDFMVQEGYAWIDTQSPQEHLYWFP 240 (254)
Q Consensus 182 ~~il~l~~~~~~g~vt~~~l~~~l~ws~~ra~~~L~~l~~~G~lwvD~q~~~e~~yw~p 240 (254)
..|+|+.. .|.+|+..|++.+|.|...|+-+|..|+++|++--=.. +-..||--
T Consensus 14 ~~ILE~Lk---~G~~~t~~Iak~LGlShg~aq~~Ly~LeREG~V~~Vk~--GK~ayw~L 67 (165)
T 2vxz_A 14 RDILALLA---DGCKTTSLIQQRLGLSHGRAKALIYVLEKEGRVTRVAF--GNVALVCL 67 (165)
T ss_dssp HHHHHHHT---TCCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSCEEEEE--TTEEEEES
T ss_pred HHHHHHHH---hCCccHHHHHHHhCCcHHHHHHHHHHHHhcCceEEEEE--ccEEEEEe
Confidence 46788887 48999999999999999999999999999999876655 56788864
No 111
>3f6v_A Possible transcriptional regulator, ARSR family protein; probable transcriptional repressor ARSR family, structural genomics, PSI-2; 1.48A {Rhodococcus SP}
Probab=89.94 E-value=0.48 Score=38.00 Aligned_cols=55 Identities=13% Similarity=0.147 Sum_probs=44.0
Q ss_pred HHHHHHHhhccCCCcccHHHHHHhcCCCHHHHHHHHHHHHHcCcEEEeCCCCCcccceec
Q psy6552 181 HSLVLQQVASKNEAHISVSVLNNELNWSTERAQHALDFMVQEGYAWIDTQSPQEHLYWFP 240 (254)
Q Consensus 181 ~~~il~l~~~~~~g~vt~~~l~~~l~ws~~ra~~~L~~l~~~G~lwvD~q~~~e~~yw~p 240 (254)
...||.+.. .|..|+.+|++.+|++..-+...|..|++.|++.+... +...||..
T Consensus 60 R~~IL~~L~---~~~~t~~eLa~~lgls~stvs~hL~~L~~aGlV~~~~~--Gr~~~y~l 114 (151)
T 3f6v_A 60 RRRLVQLLT---SGEQTVNNLAAHFPASRSAISQHLRVLTEAGLVTPRKD--GRFRYYRL 114 (151)
T ss_dssp HHHHHHHGG---GCCEEHHHHHTTSSSCHHHHHHHHHHHHHTTSEEEEEE--TTEEEEEE
T ss_pred HHHHHHHHH---hCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEec--CCEEEEEE
Confidence 345666665 25699999999999999999999999999999998754 34455543
No 112
>2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus}
Probab=89.82 E-value=0.41 Score=41.57 Aligned_cols=53 Identities=11% Similarity=0.049 Sum_probs=46.5
Q ss_pred CCCCChhHHHHHHHhhccCCCcccHHHHHHhcCCCHHHHHHHHHHHHHcCcEEEe
Q psy6552 174 PGELSLDHSLVLQQVASKNEAHISVSVLNNELNWSTERAQHALDFMVQEGYAWID 228 (254)
Q Consensus 174 p~els~D~~~il~l~~~~~~g~vt~~~l~~~l~ws~~ra~~~L~~l~~~G~lwvD 228 (254)
+..++..+-.+|+.... .|.+|..+|++.+|.++.-+...|..|++.|++.++
T Consensus 147 ~~~L~~~~~~IL~~L~~--~~~~s~~eLA~~lglsksTv~r~L~~Le~~GlV~r~ 199 (244)
T 2wte_A 147 MRDYSREEMKLLNVLYE--TKGTGITELAKMLDKSEKTLINKIAELKKFGILTQK 199 (244)
T ss_dssp HSCCCHHHHHHHHHHHH--HTCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred cCCCCHHHHHHHHHHHH--cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEe
Confidence 34578778888887653 367999999999999999999999999999999998
No 113
>2c9l_Y EB1, zebra, BZLF1 trans-activator protein; viral protein, epstein-BARR virus, EBV; 2.25A {Human herpesvirus 4} SCOP: h.1.3.1 PDB: 2c9n_Y
Probab=89.79 E-value=0.22 Score=33.62 Aligned_cols=39 Identities=21% Similarity=0.474 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHhhhhhhcCHHHHHHHHHHHHHcCCCc
Q psy6552 40 NTFRDKLESFASEYKNEIKKDAQFRRHFQEMCASIGVDP 78 (254)
Q Consensus 40 ~~fk~~L~~FA~kh~~~I~~dp~fr~~f~~mc~~lGVdP 78 (254)
++|+..|+.|-.--..+-.+|.-+|--+.+||-+|.||.
T Consensus 18 akfkn~lqh~r~vaaaks~en~rlr~l~kqmcpsldvds 56 (63)
T 2c9l_Y 18 AKFKQLLQHYREVAAAKSSENDRLRLLLKQMCPSLDVDS 56 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCCHHH
T ss_pred HHHHHHHHHHHHHHHhhcccchHHHHHHHHhCCcccccc
Confidence 456666655544444445567788999999999999993
No 114
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=89.35 E-value=0.52 Score=34.24 Aligned_cols=35 Identities=3% Similarity=-0.031 Sum_probs=32.0
Q ss_pred cccHHHHHHhcCCCHHHHHHHHHHHHHcCcEEEeCC
Q psy6552 195 HISVSVLNNELNWSTERAQHALDFMVQEGYAWIDTQ 230 (254)
Q Consensus 195 ~vt~~~l~~~l~ws~~ra~~~L~~l~~~G~lwvD~q 230 (254)
.+|+.+|++.++.++.-+...|..|++.|++ .|..
T Consensus 30 ~~t~~eLa~~l~i~~~tvs~~l~~Le~~Glv-~~~~ 64 (95)
T 2qvo_A 30 DVYIQYIASKVNSPHSYVWLIIKKFEEAKMV-ECEL 64 (95)
T ss_dssp CEEHHHHHHHSSSCHHHHHHHHHHHHHTTSE-EEEE
T ss_pred CcCHHHHHHHHCcCHHHHHHHHHHHHHCcCc-cCCC
Confidence 3999999999999999999999999999999 5543
No 115
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*
Probab=88.75 E-value=0.59 Score=36.04 Aligned_cols=44 Identities=9% Similarity=0.146 Sum_probs=37.8
Q ss_pred HHHHhhccCCCcccHHHHHHhcCCCHHHHHHHHHHHHHcCcEEEeC
Q psy6552 184 VLQQVASKNEAHISVSVLNNELNWSTERAQHALDFMVQEGYAWIDT 229 (254)
Q Consensus 184 il~l~~~~~~g~vt~~~l~~~l~ws~~ra~~~L~~l~~~G~lwvD~ 229 (254)
++.+... .|.+|+.+|++.+|+++.-+...|..|++.|++-+..
T Consensus 13 i~~l~~~--~~~~~~~ela~~l~vs~~tvs~~l~~Le~~Glv~r~~ 56 (142)
T 1on2_A 13 IYMLIEE--KGYARVSDIAEALAVHPSSVTKMVQKLDKDEYLIYEK 56 (142)
T ss_dssp HHHHHHH--HSSCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEET
T ss_pred HHHHHhh--cCCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEEee
Confidence 3455542 4679999999999999999999999999999999874
No 116
>2ve8_A FTSK, DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA-binding, winged helix, bacterial cell division; HET: DNA; 1.4A {Pseudomonas aeruginosa} SCOP: a.4.5.67 PDB: 2ve9_A* 2j5o_A*
Probab=88.49 E-value=1.1 Score=32.16 Aligned_cols=48 Identities=17% Similarity=0.157 Sum_probs=40.1
Q ss_pred HHHHHHHhhccCCCcccHHHHHHhcCCCHHHHHHHHHHHHHcCcEEEeCC
Q psy6552 181 HSLVLQQVASKNEAHISVSVLNNELNWSTERAQHALDFMVQEGYAWIDTQ 230 (254)
Q Consensus 181 ~~~il~l~~~~~~g~vt~~~l~~~l~ws~~ra~~~L~~l~~~G~lwvD~q 230 (254)
...+++++-. .+..|++.|..+|.+-..||...++.|+++|++=--+.
T Consensus 12 y~~A~~~V~~--~~~aS~S~lQR~lrIGYnRAArlid~lE~~GiVgp~~g 59 (73)
T 2ve8_A 12 YDEAVRFVTE--SRRASISAVQRKLKIGYNRAARMIEAMEMAGVVTPMNT 59 (73)
T ss_dssp HHHHHHHHHH--HCCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSBCCCCT
T ss_pred HHHHHHHHHh--cCCccHHHHHHHHccChHHHHHHHHHHHHCCcCCcccC
Confidence 4566676663 47899999999999999999999999999999855443
No 117
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=88.32 E-value=1.3 Score=31.98 Aligned_cols=45 Identities=11% Similarity=-0.020 Sum_probs=38.8
Q ss_pred HHHHHHHhhccCCCcccHHHHHHhcCCCHHHHHHHHHHHHHcCcEEEeC
Q psy6552 181 HSLVLQQVASKNEAHISVSVLNNELNWSTERAQHALDFMVQEGYAWIDT 229 (254)
Q Consensus 181 ~~~il~l~~~~~~g~vt~~~l~~~l~ws~~ra~~~L~~l~~~G~lwvD~ 229 (254)
...|+.+. . |.+|+.+|++.+|++..-+...|..|++.|++-+..
T Consensus 33 r~~Il~~L--~--~~~~~~eLa~~l~is~~tv~~~L~~L~~~Glv~~~~ 77 (96)
T 1y0u_A 33 RRKILRML--D--KGRSEEEIMQTLSLSKKQLDYHLKVLEAGFCIERVG 77 (96)
T ss_dssp HHHHHHHH--H--TTCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEET
T ss_pred HHHHHHHH--c--CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEC
Confidence 45566666 2 469999999999999999999999999999998875
No 118
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=88.27 E-value=0.6 Score=33.77 Aligned_cols=36 Identities=14% Similarity=0.060 Sum_probs=33.5
Q ss_pred cccHHHHHHhcCCCHHH-HHHHHHHHHHcCcEEEeCC
Q psy6552 195 HISVSVLNNELNWSTER-AQHALDFMVQEGYAWIDTQ 230 (254)
Q Consensus 195 ~vt~~~l~~~l~ws~~r-a~~~L~~l~~~G~lwvD~q 230 (254)
.+|+.+|++.+++++.- +...|+.|++.|++-.|..
T Consensus 30 ~~t~~eLa~~l~is~~t~vs~~l~~Le~~Glv~~~~~ 66 (95)
T 2pg4_A 30 EPSLAEIVKASGVSEKTFFMGLKDRLIRAGLVKEETL 66 (95)
T ss_dssp CCCHHHHHHHHCCCHHHHHTTHHHHHHHTTSEEEEEE
T ss_pred CCCHHHHHHHHCCCchHHHHHHHHHHHHCCCeecCCC
Confidence 79999999999999999 9999999999999996654
No 119
>3u5c_Z RP45, S31, YS23, 40S ribosomal protein S25-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_V 3o30_Q 3o2z_Q 3u5g_Z
Probab=88.14 E-value=0.22 Score=38.33 Aligned_cols=38 Identities=29% Similarity=0.225 Sum_probs=33.9
Q ss_pred CCcccHHHHHHhcCCCHHHHHHHHHHHHHcCcEEEeCC
Q psy6552 193 EAHISVSVLNNELNWSTERAQHALDFMVQEGYAWIDTQ 230 (254)
Q Consensus 193 ~g~vt~~~l~~~l~ws~~ra~~~L~~l~~~G~lwvD~q 230 (254)
...||++.|++.|++...+|+.+|++|+..|++-.=..
T Consensus 57 ~KlITpsvlseRlkI~gSLAR~aLreL~~kGlIk~V~k 94 (108)
T 3u5c_Z 57 YRYVSVSVLVDRLKIGGSLARIALRHLEKEGIIKPISK 94 (108)
T ss_dssp CSSBSHHHHHHTTCCCTTHHHHHHHHHSSSSSCEEEEC
T ss_pred CeEEeHHHhhhhhhhhHHHHHHHHHHHHHCCCEEEEec
Confidence 57899999999999999999999999999999764333
No 120
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=87.92 E-value=1.2 Score=38.63 Aligned_cols=56 Identities=18% Similarity=0.262 Sum_probs=46.3
Q ss_pred CCChhHHHHHHHhhccCCCcccHHHHHHhcCCCHHHHHHHHHHHHHcCcEEEeCCC
Q psy6552 176 ELSLDHSLVLQQVASKNEAHISVSVLNNELNWSTERAQHALDFMVQEGYAWIDTQS 231 (254)
Q Consensus 176 els~D~~~il~l~~~~~~g~vt~~~l~~~l~ws~~ra~~~L~~l~~~G~lwvD~q~ 231 (254)
.++.-|-.||......+++.+|+.+|++.+++++.-....++.|++.|++-+-..+
T Consensus 155 gLt~~q~~vL~~L~~~~~~~~t~~eLa~~l~i~~~tvt~~v~rLe~~GlV~R~~~~ 210 (250)
T 1p4x_A 155 TLSFVEFTILAIITSQNKNIVLLKDLIETIHHKYPQTVRALNNLKKQGYLIKERST 210 (250)
T ss_dssp SSCHHHHHHHHHHHTTTTCCEEHHHHHHHSSSCHHHHHHHHHHHHHHTSSEEEECS
T ss_pred CCCHHHHHHHHHHHhCCCCCcCHHHHHHHHCCChhhHHHHHHHHHHCCCEEeeCCC
Confidence 36777877877766331235999999999999999999999999999999997665
No 121
>3hrs_A Metalloregulator SCAR; DTXR/MNTR family member, transcription; 2.70A {Streptococcus gordonii} PDB: 3hrt_A 3hru_A
Probab=87.91 E-value=0.82 Score=38.51 Aligned_cols=49 Identities=10% Similarity=0.079 Sum_probs=41.6
Q ss_pred hHH-HHHHHhhccCCCcccHHHHHHhcCCCHHHHHHHHHHHHHcCcEEEeCC
Q psy6552 180 DHS-LVLQQVASKNEAHISVSVLNNELNWSTERAQHALDFMVQEGYAWIDTQ 230 (254)
Q Consensus 180 D~~-~il~l~~~~~~g~vt~~~l~~~l~ws~~ra~~~L~~l~~~G~lwvD~q 230 (254)
|.- .|+.+.+ ..|.+|..+|++.+++++.-+...|..|+++|++-+...
T Consensus 6 dYL~~I~~l~~--~~~~~~~~~lA~~l~vs~~tvs~~l~~Le~~GlV~r~~~ 55 (214)
T 3hrs_A 6 DYLKCLYELGT--RHNKITNKEIAQLMQVSPPAVTEMMKKLLAEELLIKDKK 55 (214)
T ss_dssp HHHHHHHHTTS--SCSCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETT
T ss_pred HHHHHHHHHHh--cCCCcCHHHHHHHHCCChhHHHHHHHHHHHCCCEEEecC
Confidence 543 4456555 478999999999999999999999999999999988754
No 122
>2xrn_A HTH-type transcriptional regulator TTGV; DNA-binding protein, tetramer gene regulator, cooperative DN binding, multidrug binding protein; 2.90A {Pseudomonas putida} PDB: 2xro_A
Probab=87.50 E-value=0.94 Score=38.70 Aligned_cols=47 Identities=9% Similarity=0.099 Sum_probs=40.1
Q ss_pred HHHHHhhccCCCcccHHHHHHhcCCCHHHHHHHHHHHHHcCcEEEeCC
Q psy6552 183 LVLQQVASKNEAHISVSVLNNELNWSTERAQHALDFMVQEGYAWIDTQ 230 (254)
Q Consensus 183 ~il~l~~~~~~g~vt~~~l~~~l~ws~~ra~~~L~~l~~~G~lwvD~q 230 (254)
.||++.... .+.+|..+|++.+|+++.-+...|..|++.|++.+|..
T Consensus 10 ~iL~~l~~~-~~~~s~~ela~~~gl~~stv~r~l~~L~~~G~v~~~~~ 56 (241)
T 2xrn_A 10 SIMRALGSH-PHGLSLAAIAQLVGLPRSTVQRIINALEEEFLVEALGP 56 (241)
T ss_dssp HHHHHHHTC-TTCEEHHHHHHHTTSCHHHHHHHHHHHHTTTSEEECGG
T ss_pred HHHHHHHhC-CCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEeCC
Confidence 466766532 45799999999999999999999999999999999853
No 123
>1r7j_A Conserved hypothetical protein SSO10A; winged helix-turn-helix, two-stranded antiparallel coiled CO structural genomics, PSI; 1.47A {Sulfolobus solfataricus} SCOP: a.4.5.49 PDB: 1xsx_A
Probab=87.39 E-value=1.5 Score=32.36 Aligned_cols=44 Identities=7% Similarity=0.042 Sum_probs=38.0
Q ss_pred HHHHHhhccCCCcccHHHHHHhcCCCHHHHHHHHHHHHHcCcEEEeCC
Q psy6552 183 LVLQQVASKNEAHISVSVLNNELNWSTERAQHALDFMVQEGYAWIDTQ 230 (254)
Q Consensus 183 ~il~l~~~~~~g~vt~~~l~~~l~ws~~ra~~~L~~l~~~G~lwvD~q 230 (254)
.||..+. .| ++...|+..+|.++..+...|+.|++.|++-++..
T Consensus 12 ~IL~~i~---~~-~~~t~La~~~~ls~~~~~~~l~~L~~~GLI~~~~~ 55 (95)
T 1r7j_A 12 AILEACK---SG-SPKTRIMYGANLSYALTGRYIKMLMDLEIIRQEGK 55 (95)
T ss_dssp HHHHHHT---TC-BCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETT
T ss_pred HHHHHHH---cC-CCHHHHHHHhCcCHHHHHHHHHHHHHCCCeEEECC
Confidence 4456565 35 99999999999999999999999999999998843
No 124
>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69
Probab=87.26 E-value=1.3 Score=33.17 Aligned_cols=45 Identities=11% Similarity=0.107 Sum_probs=38.1
Q ss_pred HHHHHhhccCCCcccHHHHHHhc-CCCHHHHHHHHHHHHHcCcEEEeCC
Q psy6552 183 LVLQQVASKNEAHISVSVLNNEL-NWSTERAQHALDFMVQEGYAWIDTQ 230 (254)
Q Consensus 183 ~il~l~~~~~~g~vt~~~l~~~l-~ws~~ra~~~L~~l~~~G~lwvD~q 230 (254)
.||.... . |.+|..+|++.+ |++..-....|..|++.|++-+...
T Consensus 26 ~IL~~L~--~-~~~~~~eLa~~l~~is~~tvs~~L~~Le~~GlI~r~~~ 71 (112)
T 1z7u_A 26 SLMDELF--Q-GTKRNGELMRALDGITQRVLTDRLREMEKDGLVHRESF 71 (112)
T ss_dssp HHHHHHH--H-SCBCHHHHHHHSTTCCHHHHHHHHHHHHHHTSEEEEEE
T ss_pred HHHHHHH--h-CCCCHHHHHHHhccCCHHHHHHHHHHHHHCCCEEEeec
Confidence 4555444 2 679999999999 9999999999999999999988654
No 125
>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis}
Probab=86.90 E-value=1.9 Score=32.92 Aligned_cols=36 Identities=14% Similarity=0.072 Sum_probs=33.1
Q ss_pred CCcccHHHHHHhcCCCHHHHHHHHHHHHHcCcEEEe
Q psy6552 193 EAHISVSVLNNELNWSTERAQHALDFMVQEGYAWID 228 (254)
Q Consensus 193 ~g~vt~~~l~~~l~ws~~ra~~~L~~l~~~G~lwvD 228 (254)
++.+|..+|++.+|+++.-....|..|.+.|++-..
T Consensus 24 ~~~~s~~ela~~~~i~~~~v~~il~~L~~~Glv~~~ 59 (129)
T 2y75_A 24 EGPTSLKSIAQTNNLSEHYLEQLVSPLRNAGLVKSI 59 (129)
T ss_dssp SCCBCHHHHHHHTTSCHHHHHHHHHHHHHTTSEEEC
T ss_pred CCcCCHHHHHHHHCcCHHHHHHHHHHHHHCCceEec
Confidence 467999999999999999999999999999997654
No 126
>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69
Probab=86.88 E-value=1.8 Score=32.01 Aligned_cols=45 Identities=13% Similarity=0.123 Sum_probs=38.0
Q ss_pred HHHHHhhccCCCcccHHHHHHhc-CCCHHHHHHHHHHHHHcCcEEEeCC
Q psy6552 183 LVLQQVASKNEAHISVSVLNNEL-NWSTERAQHALDFMVQEGYAWIDTQ 230 (254)
Q Consensus 183 ~il~l~~~~~~g~vt~~~l~~~l-~ws~~ra~~~L~~l~~~G~lwvD~q 230 (254)
.||.... .|..+..+|++.+ |+++.-....|..|++.|++-+-..
T Consensus 18 ~IL~~L~---~~~~~~~eLa~~l~~is~~tls~~L~~Le~~GlI~r~~~ 63 (107)
T 2hzt_A 18 VILXHLT---HGKKRTSELKRLMPNITQKMLTQQLRELEADGVINRIVY 63 (107)
T ss_dssp HHHHHHT---TCCBCHHHHHHHCTTSCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred HHHHHHH---hCCCCHHHHHHHhcCCCHHHHHHHHHHHHHCCCEEEeec
Confidence 3555444 3679999999999 9999999999999999999987644
No 127
>2lnb_A Z-DNA-binding protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, immune system; NMR {Homo sapiens}
Probab=86.32 E-value=1.4 Score=31.90 Aligned_cols=59 Identities=14% Similarity=0.085 Sum_probs=49.7
Q ss_pred CChhHHHHHHHhhccCCCcccHHHHHHhcCCCHHHHHHHHHHHHHcCcEEEeCCCCCcccceecc
Q psy6552 177 LSLDHSLVLQQVASKNEAHISVSVLNNELNWSTERAQHALDFMVQEGYAWIDTQSPQEHLYWFPS 241 (254)
Q Consensus 177 ls~D~~~il~l~~~~~~g~vt~~~l~~~l~ws~~ra~~~L~~l~~~G~lwvD~q~~~e~~yw~p~ 241 (254)
+++-..+||++..+. +.-+++.+|+..+|.+..-...+|..|-.+|.+.- ..+-||-|.
T Consensus 17 ~~d~eekVLe~Lkea-G~PlkageIae~~GvdKKeVdKaik~LKkEgkI~S-----PkRCyw~~~ 75 (80)
T 2lnb_A 17 EGHLEQRILQVLTEA-GSPVKLAQLVKECQAPKRELNQVLYRMKKELKVSL-----TSPATWCLG 75 (80)
T ss_dssp HHHHHHHHHHHHHHH-TSCEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEE-----EETTEEEES
T ss_pred cchHHHHHHHHHHHc-CCCCCHHHHHHHHCCCHHHHHHHHHHHHHcCCccC-----CCCceeeCC
Confidence 343367899999876 67899999999999999999999999999999642 367899886
No 128
>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus}
Probab=86.11 E-value=1.4 Score=30.08 Aligned_cols=36 Identities=17% Similarity=0.337 Sum_probs=29.3
Q ss_pred hhhhcCCceeHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHhhhhC
Q psy6552 109 TNYKNGGLILLDELRTRLVKSRGKSLQHQDITNEDLLAAAKKLKIFG 155 (254)
Q Consensus 109 ~r~~nGGii~L~dl~~~~nr~Rg~~~~~~~IS~~Di~rA~~~L~~Lg 155 (254)
....+||++.++++-..| -|+++|++.+.+.|+.-|
T Consensus 18 yIr~sGGildI~~~a~ky-----------gV~kdeV~~~LrrLe~KG 53 (59)
T 2xvc_A 18 YIVNNGGFLDIEHFSKVY-----------GVEKQEVVKLLEALKNKG 53 (59)
T ss_dssp HHHHTTSEEEHHHHHHHH-----------CCCHHHHHHHHHHHHHTT
T ss_pred HHHHcCCEEeHHHHHHHh-----------CCCHHHHHHHHHHHHHCC
Confidence 345689999988876553 489999999999999877
No 129
>3r4k_A Transcriptional regulator, ICLR family; DNA/RNA-binding 3-helical bundle, profilin-like, structural joint center for structural genomics, JCSG; 2.46A {Ruegeria SP}
Probab=85.62 E-value=0.79 Score=39.67 Aligned_cols=47 Identities=11% Similarity=0.061 Sum_probs=40.1
Q ss_pred HHHHHhhccCCCcccHHHHHHhcCCCHHHHHHHHHHHHHcCcEEEeCC
Q psy6552 183 LVLQQVASKNEAHISVSVLNNELNWSTERAQHALDFMVQEGYAWIDTQ 230 (254)
Q Consensus 183 ~il~l~~~~~~g~vt~~~l~~~l~ws~~ra~~~L~~l~~~G~lwvD~q 230 (254)
.||++.... .+.+|..+|++.+|.++.-+-..|..|++.|++-.|..
T Consensus 10 ~IL~~l~~~-~~~lsl~eia~~lgl~ksT~~RlL~tL~~~G~v~~~~~ 56 (260)
T 3r4k_A 10 TLLTYFNHG-RLEIGLSDLTRLSGMNKATVYRLMSELQEAGFVEQVEG 56 (260)
T ss_dssp HHHTTCBTT-BSEEEHHHHHHHHCSCHHHHHHHHHHHHHTTSEEECSS
T ss_pred HHHHHHhhC-CCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEcCC
Confidence 355555532 57899999999999999999999999999999999865
No 130
>1mkm_A ICLR transcriptional regulator; structural genomics, winged helix-turn-helix, PSI, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.33 d.110.2.2
Probab=85.41 E-value=2 Score=36.70 Aligned_cols=46 Identities=17% Similarity=0.273 Sum_probs=39.6
Q ss_pred HHHHHHhhccCCCcccHHHHHHhcCCCHHHHHHHHHHHHHcCcEEEe
Q psy6552 182 SLVLQQVASKNEAHISVSVLNNELNWSTERAQHALDFMVQEGYAWID 228 (254)
Q Consensus 182 ~~il~l~~~~~~g~vt~~~l~~~l~ws~~ra~~~L~~l~~~G~lwvD 228 (254)
..||++.... .+.+|..+|++.+|+++.-+...|..|++.|++..|
T Consensus 11 l~iL~~l~~~-~~~~~~~ela~~~gl~~stv~r~l~~L~~~G~v~~~ 56 (249)
T 1mkm_A 11 FEILDFIVKN-PGDVSVSEIAEKFNMSVSNAYKYMVVLEEKGFVLRK 56 (249)
T ss_dssp HHHHHHHHHC-SSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEC
T ss_pred HHHHHHHHhC-CCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEC
Confidence 3567665532 457999999999999999999999999999999998
No 131
>2h09_A Transcriptional regulator MNTR; transcription regulator, diphtheria toxin, manganese transport, structural genomics, NPPSFA; 2.10A {Escherichia coli}
Probab=85.18 E-value=1.1 Score=35.04 Aligned_cols=43 Identities=9% Similarity=0.008 Sum_probs=36.4
Q ss_pred HHHhhccCCCcccHHHHHHhcCCCHHHHHHHHHHHHHcCcEEEeC
Q psy6552 185 LQQVASKNEAHISVSVLNNELNWSTERAQHALDFMVQEGYAWIDT 229 (254)
Q Consensus 185 l~l~~~~~~g~vt~~~l~~~l~ws~~ra~~~L~~l~~~G~lwvD~ 229 (254)
+.+... .|.+|+.+|++.+|++..-....|..|++.|++-+..
T Consensus 46 ~~~l~~--~~~~~~~~la~~l~vs~~tvs~~l~~Le~~Glv~r~~ 88 (155)
T 2h09_A 46 SDLIRE--VGEARQVDMAARLGVSQPTVAKMLKRLATMGLIEMIP 88 (155)
T ss_dssp HHHHHH--HSCCCHHHHHHHHTSCHHHHHHHHHHHHHTTCEEEET
T ss_pred HHHHHh--CCCcCHHHHHHHhCcCHHHHHHHHHHHHHCCCEEEec
Confidence 344442 4679999999999999999999999999999987763
No 132
>3mq0_A Transcriptional repressor of the blcabc operon; helix-turn-helix, GAF fold, transcription repressor; 1.79A {Agrobacterium tumefaciens}
Probab=85.06 E-value=1.1 Score=39.14 Aligned_cols=46 Identities=17% Similarity=0.164 Sum_probs=37.8
Q ss_pred HHHHHhhccCCCcccHHHHHHhcCCCHHHHHHHHHHHHHcCcEEEeC
Q psy6552 183 LVLQQVASKNEAHISVSVLNNELNWSTERAQHALDFMVQEGYAWIDT 229 (254)
Q Consensus 183 ~il~l~~~~~~g~vt~~~l~~~l~ws~~ra~~~L~~l~~~G~lwvD~ 229 (254)
.||++.... .+.+|..+|++.+|+++.-+-..|..|++.|++-.|.
T Consensus 34 ~IL~~l~~~-~~~ltl~eia~~lgl~ksTv~RlL~tL~~~G~v~~~~ 79 (275)
T 3mq0_A 34 RILDLVAGS-PRDLTAAELTRFLDLPKSSAHGLLAVMTELDLLARSA 79 (275)
T ss_dssp HHHHHHHHC-SSCEEHHHHHHHHTCC--CHHHHHHHHHHTTSEEECT
T ss_pred HHHHHHhhC-CCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEECC
Confidence 356665543 5679999999999999999999999999999999985
No 133
>2fsw_A PG_0823 protein; alpha-beta structure, helix-turn-helix, winged-helix-turn-HE structural genomics, PSI, protein structure initiative; HET: MSE; 2.16A {Porphyromonas gingivalis} SCOP: a.4.5.69
Probab=84.93 E-value=2.5 Score=31.23 Aligned_cols=38 Identities=16% Similarity=0.157 Sum_probs=34.2
Q ss_pred CCcccHHHHHHhc-CCCHHHHHHHHHHHHHcCcEEEeCC
Q psy6552 193 EAHISVSVLNNEL-NWSTERAQHALDFMVQEGYAWIDTQ 230 (254)
Q Consensus 193 ~g~vt~~~l~~~l-~ws~~ra~~~L~~l~~~G~lwvD~q 230 (254)
.|..+..+|++.+ |++..-....|..|++.|++-+-..
T Consensus 36 ~~~~~~~eL~~~l~gis~~~ls~~L~~Le~~GlV~r~~~ 74 (107)
T 2fsw_A 36 RRIIRYGELKRAIPGISEKMLIDELKFLCGKGLIKKKQY 74 (107)
T ss_dssp TSCEEHHHHHHHSTTCCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred hCCcCHHHHHHHcccCCHHHHHHHHHHHHHCCCEEEeec
Confidence 3679999999999 5999999999999999999987644
No 134
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=84.63 E-value=2.3 Score=32.85 Aligned_cols=55 Identities=13% Similarity=0.115 Sum_probs=41.5
Q ss_pred CCChhHHHHH-HHhhcc--CCCcccHHHHHHhcCCCHHHHHHHHHHHHHcCcEEEeCC
Q psy6552 176 ELSLDHSLVL-QQVASK--NEAHISVSVLNNELNWSTERAQHALDFMVQEGYAWIDTQ 230 (254)
Q Consensus 176 els~D~~~il-~l~~~~--~~g~vt~~~l~~~l~ws~~ra~~~L~~l~~~G~lwvD~q 230 (254)
.++..+-.++ -+.... ...+.|+++|++.+|.+..-+..+|+.|++.|++-+...
T Consensus 29 gLt~~e~~vll~L~~~~~~~~~~ps~~~LA~~l~~s~~~V~~~l~~Le~kGlI~~~~~ 86 (128)
T 2vn2_A 29 GLGEGELVLLLHMQSFFEEGVLFPTPAELAERMTVSAAECMEMVRRLLQKGMIAIEEH 86 (128)
T ss_dssp TCCHHHHHHHHHHHHHHTTTCSSCCHHHHHHTSSSCHHHHHHHHHHHHHTTSSEECC-
T ss_pred CCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEeE
Confidence 4665555453 333211 245799999999999999999999999999999999543
No 135
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=84.41 E-value=1.5 Score=36.21 Aligned_cols=55 Identities=16% Similarity=0.126 Sum_probs=43.0
Q ss_pred CCChhHHHHHHHhhcc--CCC-cccHHHHHHhcCCCHHHHHHHHHHHHHcCcEEEeCC
Q psy6552 176 ELSLDHSLVLQQVASK--NEA-HISVSVLNNELNWSTERAQHALDFMVQEGYAWIDTQ 230 (254)
Q Consensus 176 els~D~~~il~l~~~~--~~g-~vt~~~l~~~l~ws~~ra~~~L~~l~~~G~lwvD~q 230 (254)
+++.-|..+|+.+.+. ..| ..|..+|++.+|++..-+...|..|++.|++-++..
T Consensus 2 ~lt~~q~~il~~I~~~~~~~g~~~s~~eia~~lgl~~~tv~~~l~~Le~~G~i~~~~~ 59 (196)
T 3k2z_A 2 DLTERQRKVLLFIEEFIEKNGYPPSVREIARRFRITPRGALLHLIALEKKGYIERKNG 59 (196)
T ss_dssp CCCHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEECC--
T ss_pred CcCHHHHHHHHHHHHHHHHhCCCCCHHHHHHHcCCCcHHHHHHHHHHHHCCCEEecCC
Confidence 3677788887765321 124 599999999999999988999999999999988854
No 136
>2b0l_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, winged HTH motif.; 2.90A {Bacillus subtilis} SCOP: a.4.5.66
Probab=84.22 E-value=1.2 Score=33.25 Aligned_cols=37 Identities=11% Similarity=0.088 Sum_probs=33.5
Q ss_pred CCcc-cHHHHHHhcCCCHHHHHHHHHHHHHcCcEEEeC
Q psy6552 193 EAHI-SVSVLNNELNWSTERAQHALDFMVQEGYAWIDT 229 (254)
Q Consensus 193 ~g~v-t~~~l~~~l~ws~~ra~~~L~~l~~~G~lwvD~ 229 (254)
++.+ |..+|++.+|+|..-++++|..|+++|++-+-.
T Consensus 40 g~~lps~~eLa~~lgVSr~tVr~al~~L~~~GlI~~~~ 77 (102)
T 2b0l_A 40 NEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRS 77 (102)
T ss_dssp TEEEECHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCcCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEe
Confidence 4456 999999999999999999999999999998765
No 137
>3iz6_V 40S ribosomal protein S25 (S25E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=84.20 E-value=0.22 Score=38.42 Aligned_cols=37 Identities=22% Similarity=0.231 Sum_probs=33.2
Q ss_pred CCcccHHHHHHhcCCCHHHHHHHHHHHHHcCcEEEeC
Q psy6552 193 EAHISVSVLNNELNWSTERAQHALDFMVQEGYAWIDT 229 (254)
Q Consensus 193 ~g~vt~~~l~~~l~ws~~ra~~~L~~l~~~G~lwvD~ 229 (254)
...||++.|++.|++...+|+.+|++|+..|++-.=.
T Consensus 58 ~KlITpsvlseRlkI~gSLAR~aLreL~~kGlIk~V~ 94 (108)
T 3iz6_V 58 YKQITPSVLSERLRINGSLARQAIKDLESRGAIRVVS 94 (108)
T ss_dssp HSSEEEHHHHHHHHTCCHHHHHHHHHHHHHHTSCEEC
T ss_pred CeEEeHHHHHhhhcccHHHHHHHHHHHHHCCCEEEEe
Confidence 4689999999999999999999999999999875433
No 138
>1hsj_A Fusion protein consisting of staphylococcus accessary regulator protein R and maltose...; novel fold for DNA binding; HET: GLC; 2.30A {Escherichia coli} SCOP: a.4.5.28 c.94.1.1
Probab=83.94 E-value=1.7 Score=40.10 Aligned_cols=58 Identities=10% Similarity=0.051 Sum_probs=47.6
Q ss_pred CCCCChhHHHHHHHhhccCCCcccHHHHHHhcCCCHHHHHHHHHHHHHcCcEEEeCCC
Q psy6552 174 PGELSLDHSLVLQQVASKNEAHISVSVLNNELNWSTERAQHALDFMVQEGYAWIDTQS 231 (254)
Q Consensus 174 p~els~D~~~il~l~~~~~~g~vt~~~l~~~l~ws~~ra~~~L~~l~~~G~lwvD~q~ 231 (254)
+..++.-|-.||........+.+|..+|++.+++++......|+.|++.|++-|-...
T Consensus 399 ~~~lt~~q~~vl~~l~~~~~~~~~~~~l~~~~~~~~~~~t~~~~~le~~g~v~r~~~~ 456 (487)
T 1hsj_A 399 KFNLNYEEIYILNHILRSESNEISSKEIAKCSEFKPYYLTKALQKLKDLKLLSKKRSL 456 (487)
T ss_dssp SCCCCHHHHHHHHHHHTCSCSEEEHHHHHHSSCCCHHHHHHHHHHHHTTTTSCCEECC
T ss_pred hcCCCHHHHHHHHHHHhCCCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeecCCC
Confidence 4558877878877766211278999999999999999999999999999999886543
No 139
>2fbk_A Transcriptional regulator, MARR family; winged-helix-turn-helix; 2.30A {Deinococcus radiodurans} SCOP: a.4.5.28
Probab=83.88 E-value=0.76 Score=36.91 Aligned_cols=54 Identities=9% Similarity=0.007 Sum_probs=43.7
Q ss_pred CChhHHHHHHHhhccCC-CcccHHHHHHhcCCCHHHHHHHHHHHHHcCcEEEeCC
Q psy6552 177 LSLDHSLVLQQVASKNE-AHISVSVLNNELNWSTERAQHALDFMVQEGYAWIDTQ 230 (254)
Q Consensus 177 ls~D~~~il~l~~~~~~-g~vt~~~l~~~l~ws~~ra~~~L~~l~~~G~lwvD~q 230 (254)
++.-+-.||......+. +++|+.+|++.+++++.-+...|+.|++.|++-+...
T Consensus 67 lt~~~~~iL~~L~~~~~~~~~t~~eLa~~l~is~~tvs~~l~~Le~~GlV~r~~~ 121 (181)
T 2fbk_A 67 LNAAGWDLLLTLYRSAPPEGLRPTELSALAAISGPSTSNRIVRLLEKGLIERRED 121 (181)
T ss_dssp CCHHHHHHHHHHHHHCCSSCBCHHHHHHHCSCCSGGGSSHHHHHHHHTSEECCC-
T ss_pred CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCcCEEecCC
Confidence 66667777776654311 2599999999999999999999999999999998654
No 140
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=83.65 E-value=10 Score=32.56 Aligned_cols=112 Identities=12% Similarity=0.095 Sum_probs=64.9
Q ss_pred cCCceeHHHHHHHHHHhcCCCCCCCCC---CHHHHHHHHH-HhhhhCCCeEEEEeC---CceEEEEccCC---C------
Q psy6552 113 NGGLILLDELRTRLVKSRGKSLQHQDI---TNEDLLAAAK-KLKIFGNGFSIIPIG---QGQYLVQSIPG---E------ 176 (254)
Q Consensus 113 nGGii~L~dl~~~~nr~Rg~~~~~~~I---S~~Di~rA~~-~L~~Lg~g~~l~~~~---sg~~vv~s~p~---e------ 176 (254)
+-|+|+..|+..++.+-..... ..+ .-+|++..|+ .|.+|+ |+|+... +|..|.-.|.. +
T Consensus 16 srg~l~~~~~~~l~~~~~~~~~--~~~~~~~l~~~I~~IN~~L~~l~--~~Ir~~~~q~~g~~~y~lVN~~~d~~~klaT 91 (238)
T 3nw0_A 16 THGVLEEWDVKRLQTHCYKVHD--RNATVDKLEDFINNINSVLESLY--IEIKRGVTEDDGRPIYALVNLATTSISKMAT 91 (238)
T ss_dssp HSSEEEHHHHHHHHHHHHHHC----CCCCCCHHHHHHHHHHHHGGGT--EEEEEEECTTTCCEEEEEEESSSCTTHHHHT
T ss_pred cCCCCCHHHHHHHHHHHHHhcC--CcccHHHHHHHHHHHHHHhhhcC--cEEEEeecCCCCCEEEEEEeCCCCHHHhhcc
Confidence 3688888888777776321111 122 4566666664 457766 5555553 35544444442 1
Q ss_pred -CChhH----HHHHHHhhccCCCcccHHHHHH---h---cCCCHHHHHHHHHHHHHcCcEEEe
Q psy6552 177 -LSLDH----SLVLQQVASKNEAHISVSVLNN---E---LNWSTERAQHALDFMVQEGYAWID 228 (254)
Q Consensus 177 -ls~D~----~~il~l~~~~~~g~vt~~~l~~---~---l~ws~~ra~~~L~~l~~~G~lwvD 228 (254)
++.++ ..+++.+-.++.|.++..++-. . -+.++..|++.|..|+++|++...
T Consensus 92 ~yt~~Ei~~fk~lle~i~~s~~~~~s~~~~lnl~~~~~~k~l~~~eae~lL~~lv~~gWl~~~ 154 (238)
T 3nw0_A 92 DFAENELDLFRKALELIIDSETGFASSTNILNLVDQLKGKKMRKKEAEQVLQKFVQNKWLIEK 154 (238)
T ss_dssp TSCHHHHHHHHHHHHHHHHSSSSCEEHHHHHGGGTTCSSSCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCHHHHHHHHHHHHHHHhCCCCceeHHHHHHHHhhcccCCCCHHHHHHHHHHHHHhcchhhh
Confidence 12221 1224333322367777654332 2 478999999999999999999874
No 141
>3i5g_C Myosin catalytic light chain LC-1, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_C 3i5h_C 3i5i_C
Probab=82.93 E-value=5.7 Score=31.08 Aligned_cols=93 Identities=14% Similarity=0.287 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHHH-H-hhhhhhcCHHHHHHHHHHHHHcCCCcccCCCccccccccchhHHHHHHHHHHHhhhhhhhcCC
Q psy6552 38 HLNTFRDKLESFAS-E-YKNEIKKDAQFRRHFQEMCASIGVDPLASRKGFWSLLGMGDFYYELSVQIVEVCLATNYKNGG 115 (254)
Q Consensus 38 ql~~fk~~L~~FA~-k-h~~~I~~dp~fr~~f~~mc~~lGVdPl~s~kg~w~~lg~gdfy~eLavqive~c~~~r~~nGG 115 (254)
|++.+|+....|=. + ..+.|..+ +|..++.+||+.|-.. +|-++. ..-..+.|
T Consensus 7 qi~elre~F~~fD~~~d~dG~I~~~-----El~~~lr~lG~~~t~~-------------------el~~~~-~~d~~~~g 61 (159)
T 3i5g_C 7 EIEEVREVFDLFDFWDGRDGDVDAA-----KVGDLLRCLGMNPTEA-------------------QVHQHG-GTKKMGEK 61 (159)
T ss_dssp HHHHHHHHHHHHHHHTTSSSCEEGG-----GHHHHHHHTTCCCCHH-------------------HHHTTT-CCSSTTSC
T ss_pred HHHHHHHHHHHHCcCCCCCCeECHH-----HHHHHHHHcCCCCCHH-------------------HHHHHH-cccccCCC
Confidence 34445555555533 1 22345433 5677888999987431 111111 12233457
Q ss_pred ceeHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHhhhhCCCe
Q psy6552 116 LILLDELRTRLVKSRGKSLQHQDITNEDLLAAAKKLKIFGNGF 158 (254)
Q Consensus 116 ii~L~dl~~~~nr~Rg~~~~~~~IS~~Di~rA~~~L~~Lg~g~ 158 (254)
-|+..+.+..+.+..... ..-++++|.+|.+.+.+=|.|+
T Consensus 62 ~i~f~eFl~~~~~~~~~~---~~~~~~~l~~aF~~fD~d~~G~ 101 (159)
T 3i5g_C 62 AYKLEEILPIYEEMSSKD---TGTAADEFMEAFKTFDREGQGL 101 (159)
T ss_dssp EECHHHHHHHHHHHTTCC---TTCCHHHHHHHHHHHCTTSSSE
T ss_pred cccHHHHHHHHHHhhccc---ccchHHHHHHHHHHHhcCCCCc
Confidence 788888877776654331 2456777888877776655554
No 142
>1yyv_A Putative transcriptional regulator; reductive methylation, D lysine, structural genomics, PSI; HET: MLY; 2.35A {Salmonella typhimurium} SCOP: a.4.5.69
Probab=82.87 E-value=2.6 Score=32.69 Aligned_cols=38 Identities=16% Similarity=0.157 Sum_probs=34.5
Q ss_pred CCcccHHHHHHhc-CCCHHHHHHHHHHHHHcCcEEEeCC
Q psy6552 193 EAHISVSVLNNEL-NWSTERAQHALDFMVQEGYAWIDTQ 230 (254)
Q Consensus 193 ~g~vt~~~l~~~l-~ws~~ra~~~L~~l~~~G~lwvD~q 230 (254)
.|..+..+|++.+ |++..-....|..|++.|++-+-..
T Consensus 46 ~g~~~~~eLa~~l~gis~~tls~~L~~Le~~GlV~r~~~ 84 (131)
T 1yyv_A 46 DGTHRFSDLRRXMGGVSEXMLAQSLQALEQDGFLNRVSY 84 (131)
T ss_dssp GCCEEHHHHHHHSTTCCHHHHHHHHHHHHHHTCEEEEEE
T ss_pred cCCCCHHHHHHHhccCCHHHHHHHHHHHHHCCcEEEEec
Confidence 3679999999999 7999999999999999999997644
No 143
>2o0y_A Transcriptional regulator; ICLR-family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.00A {Rhodococcus SP}
Probab=82.64 E-value=1.5 Score=37.81 Aligned_cols=38 Identities=8% Similarity=-0.024 Sum_probs=35.3
Q ss_pred CCcccHHHHHHhcCCCHHHHHHHHHHHHHcCcEEEeCC
Q psy6552 193 EAHISVSVLNNELNWSTERAQHALDFMVQEGYAWIDTQ 230 (254)
Q Consensus 193 ~g~vt~~~l~~~l~ws~~ra~~~L~~l~~~G~lwvD~q 230 (254)
.+.+|..+|++.+|.++.-+-..|..|++.|++..|..
T Consensus 36 ~~~~~~~eia~~~gl~kstv~r~l~tL~~~G~v~~~~~ 73 (260)
T 2o0y_A 36 HPTRSLKELVEGTKLPKTTVVRLVATMCARSVLTSRAD 73 (260)
T ss_dssp BSSBCHHHHHHHHCCCHHHHHHHHHHHHHTTSEEECTT
T ss_pred CCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEECCC
Confidence 46799999999999999999999999999999999853
No 144
>2f2e_A PA1607; transcription factor, helix-TRUN-helix, APC5613, structural genomics, PSI, protein structure initiative; HET: GLC; 1.85A {Pseudomonas aeruginosa} SCOP: a.4.5.69
Probab=82.60 E-value=3.7 Score=32.29 Aligned_cols=45 Identities=13% Similarity=0.155 Sum_probs=38.3
Q ss_pred HHHHHhhccCCCcccHHHHHHhcCCCHHHHHHHHHHHHHcCcEEEeCC
Q psy6552 183 LVLQQVASKNEAHISVSVLNNELNWSTERAQHALDFMVQEGYAWIDTQ 230 (254)
Q Consensus 183 ~il~l~~~~~~g~vt~~~l~~~l~ws~~ra~~~L~~l~~~G~lwvD~q 230 (254)
.||..+. .|..+..+|++.+|++..-....|..|++.|++-+-..
T Consensus 28 ~IL~~L~---~g~~~~~eLa~~lgis~~tls~~L~~Le~~GlI~r~~~ 72 (146)
T 2f2e_A 28 LIVRDAF---EGLTRFGEFQKSLGLAKNILAARLRNLVEHGVMVAVPA 72 (146)
T ss_dssp HHHHHHH---TTCCSHHHHHHHHCCCHHHHHHHHHHHHHTTSEEEEEC
T ss_pred HHHHHHH---hCCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEEEec
Confidence 3455454 36799999999999999999999999999999998654
No 145
>2zkz_A Transcriptional repressor PAGR; protein-DNA, HTH motif, dimer, DN binding, transcription regulation; 2.00A {Bacillus anthracis}
Probab=82.32 E-value=2 Score=31.43 Aligned_cols=45 Identities=13% Similarity=0.094 Sum_probs=37.5
Q ss_pred CcccHHHHHHhcCCCHHHHHHHHHHHHHcCcEEEeCCCCCcccceecc
Q psy6552 194 AHISVSVLNNELNWSTERAQHALDFMVQEGYAWIDTQSPQEHLYWFPS 241 (254)
Q Consensus 194 g~vt~~~l~~~l~ws~~ra~~~L~~l~~~G~lwvD~q~~~e~~yw~p~ 241 (254)
|..|+.+|++.+|.+..-+..+|..|++. ++-.... +...||..+
T Consensus 40 ~~~~~~ela~~l~is~stvs~hL~~L~~~-lv~~~~~--gr~~~y~l~ 84 (99)
T 2zkz_A 40 KALNVTQIIQILKLPQSTVSQHLCKMRGK-VLKRNRQ--GLEIYYSIN 84 (99)
T ss_dssp SCEEHHHHHHHHTCCHHHHHHHHHHHBTT-TBEEEEE--TTEEEEECC
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHHH-hhhheEe--CcEEEEEEC
Confidence 67999999999999999999999999999 8876654 455666543
No 146
>1uly_A Hypothetical protein PH1932; helix-turn-helix, structural genomics, DNA binding protein; 2.50A {Pyrococcus horikoshii} SCOP: a.4.5.58 PDB: 2cwe_A
Probab=82.22 E-value=2.5 Score=35.06 Aligned_cols=46 Identities=15% Similarity=0.284 Sum_probs=40.5
Q ss_pred hHHHHHHHhhccCCCcccHHHHHHhcCCCHHHHHHHHHHHHHcCcEEEe
Q psy6552 180 DHSLVLQQVASKNEAHISVSVLNNELNWSTERAQHALDFMVQEGYAWID 228 (254)
Q Consensus 180 D~~~il~l~~~~~~g~vt~~~l~~~l~ws~~ra~~~L~~l~~~G~lwvD 228 (254)
-+..|+.+.. . |.+|..+|++.+|.|+.-+...|..|++.|++-+.
T Consensus 21 ~~~~IL~~L~--~-~~~s~~eLA~~lglS~stv~~~l~~Le~~GlI~~~ 66 (192)
T 1uly_A 21 TRRKILKLLR--N-KEMTISQLSEILGKTPQTIYHHIEKLKEAGLVEVK 66 (192)
T ss_dssp HHHHHHHHHT--T-CCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHH--c-CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 3456777777 2 67999999999999999999999999999999886
No 147
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=82.11 E-value=4.2 Score=31.90 Aligned_cols=53 Identities=17% Similarity=0.163 Sum_probs=44.0
Q ss_pred ChhHHHHHHHhhccCCCcccHHHHHHhc-----CCCHHHHHHHHHHHHHcCcEEEeCCC
Q psy6552 178 SLDHSLVLQQVASKNEAHISVSVLNNEL-----NWSTERAQHALDFMVQEGYAWIDTQS 231 (254)
Q Consensus 178 s~D~~~il~l~~~~~~g~vt~~~l~~~l-----~ws~~ra~~~L~~l~~~G~lwvD~q~ 231 (254)
+.--..||++.... .+.+|+.+|.+.+ +++..=.-..|+.|++.|++-.=+..
T Consensus 21 T~qR~~Il~~L~~~-~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~~~~ 78 (145)
T 2fe3_A 21 TPQRHAILEYLVNS-MAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLVKELTYG 78 (145)
T ss_dssp CHHHHHHHHHHHHC-SSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSEEEECCT
T ss_pred CHHHHHHHHHHHhC-CCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCEEEEeeC
Confidence 33456788877654 6799999999988 89999999999999999999887663
No 148
>4a5n_A Uncharacterized HTH-type transcriptional regulato; activator, DNA binding, MARR-like; 1.81A {Bacillus subtilis} PDB: 4a5m_A
Probab=81.94 E-value=3.8 Score=32.08 Aligned_cols=39 Identities=5% Similarity=0.018 Sum_probs=35.7
Q ss_pred CCcccHHHHHHhc-CCCHHHHHHHHHHHHHcCcEEEeCCC
Q psy6552 193 EAHISVSVLNNEL-NWSTERAQHALDFMVQEGYAWIDTQS 231 (254)
Q Consensus 193 ~g~vt~~~l~~~l-~ws~~ra~~~L~~l~~~G~lwvD~q~ 231 (254)
.|..+..+|++.+ |++.......|..|++.|++-+-..+
T Consensus 37 ~g~~rf~eL~~~l~gIs~~~Ls~~L~~Le~~GLV~R~~~~ 76 (131)
T 4a5n_A 37 DGKKRFNEFRRICPSITQRMLTLQLRELEADGIVHREVYH 76 (131)
T ss_dssp TSCBCHHHHHHHCTTSCHHHHHHHHHHHHHTTSEEEEEEC
T ss_pred cCCcCHHHHHHHhcccCHHHHHHHHHHHHHCCCEEEEecC
Confidence 4789999999999 99999999999999999999987543
No 149
>4fx0_A Probable transcriptional repressor protein; helix-turn-helix, DNA binding, transcription regulator; 2.70A {Mycobacterium tuberculosis} PDB: 4fx4_A*
Probab=80.94 E-value=2.7 Score=32.81 Aligned_cols=49 Identities=14% Similarity=0.222 Sum_probs=37.1
Q ss_pred CChhHHHHHHHhhccC---CCcccHHHHHHhcCCCHHHHHHHHHHHHHcCcE
Q psy6552 177 LSLDHSLVLQQVASKN---EAHISVSVLNNELNWSTERAQHALDFMVQEGYA 225 (254)
Q Consensus 177 ls~D~~~il~l~~~~~---~g~vt~~~l~~~l~ws~~ra~~~L~~l~~~G~l 225 (254)
++.-|-.+|....... .|.+|+.+|++.+++++.-....|+.|++.|++
T Consensus 31 Lt~~q~~vL~~l~~~~~~~~~~~t~~eLa~~l~~~~~tvsr~v~~Le~~glV 82 (148)
T 4fx0_A 31 LTNTQFSTLAVISLSEGSAGIDLTMSELAARIGVERTTLTRNLEVMRRDGLV 82 (148)
T ss_dssp CCHHHHHHHHHHHC---------CHHHHHHHHTCCHHHHHHHHHHHHHTTSB
T ss_pred CCHHHHHHHHHHHHhcCCCCCCcCHHHHHHHHCCChhhHHHHHHHHHHCCCE
Confidence 5656777766654321 356999999999999999999999999999998
No 150
>2g7u_A Transcriptional regulator; ICLR family, structural genomics, PSI, protein structure initiative, midwest center for struc genomics; 2.30A {Rhodococcus SP}
Probab=80.41 E-value=2.1 Score=36.72 Aligned_cols=45 Identities=18% Similarity=0.164 Sum_probs=38.5
Q ss_pred HHHHHhhccCCCcccHHHHHHhcCCCHHHHHHHHHHHHHcCcEEEe
Q psy6552 183 LVLQQVASKNEAHISVSVLNNELNWSTERAQHALDFMVQEGYAWID 228 (254)
Q Consensus 183 ~il~l~~~~~~g~vt~~~l~~~l~ws~~ra~~~L~~l~~~G~lwvD 228 (254)
.||++.... .+.+|..+|++.+|+++.-+...|..|++.|++..|
T Consensus 18 ~iL~~l~~~-~~~~~~~eia~~~gl~~stv~r~l~~L~~~G~v~~~ 62 (257)
T 2g7u_A 18 AVLLAFDAQ-RPNPTLAELATEAGLSRPAVRRILLTLQKLGYVAGS 62 (257)
T ss_dssp HHHHTCSSS-CSSCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHhC-CCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEeC
Confidence 455555422 467999999999999999999999999999999998
No 151
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=80.15 E-value=4 Score=31.42 Aligned_cols=49 Identities=16% Similarity=0.141 Sum_probs=41.7
Q ss_pred HHHHHHhhccCCCcccHHHHHHhc-----CCCHHHHHHHHHHHHHcCcEEEeCCC
Q psy6552 182 SLVLQQVASKNEAHISVSVLNNEL-----NWSTERAQHALDFMVQEGYAWIDTQS 231 (254)
Q Consensus 182 ~~il~l~~~~~~g~vt~~~l~~~l-----~ws~~ra~~~L~~l~~~G~lwvD~q~ 231 (254)
..||++.... .+.+|+++|.+.+ +++..=.-..|+.|++.|++-.=+..
T Consensus 14 ~~Il~~l~~~-~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv~~~~~~ 67 (131)
T 2o03_A 14 AAISTLLETL-DDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGLVDTLHTD 67 (131)
T ss_dssp HHHHHHHHHC-CSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTSEEEEECT
T ss_pred HHHHHHHHhC-CCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCEEEEEeC
Confidence 4677777644 6799999999988 89999999999999999999876653
No 152
>2lmt_A Calmodulin-related protein 97A; spermatogenesis, metal binding protein; NMR {Drosophila melanogaster} PDB: 2lmu_A 2lmv_A
Probab=79.95 E-value=6.4 Score=29.83 Aligned_cols=90 Identities=19% Similarity=0.338 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHHhhhhhhcCHHHHHHHHHHHHHcCCCcccCCCccccccccchhHHHHHHHHHHHhhhhhhhcCCcee
Q psy6552 39 LNTFRDKLESFASEYKNEIKKDAQFRRHFQEMCASIGVDPLASRKGFWSLLGMGDFYYELSVQIVEVCLATNYKNGGLIL 118 (254)
Q Consensus 39 l~~fk~~L~~FA~kh~~~I~~dp~fr~~f~~mc~~lGVdPl~s~kg~w~~lg~gdfy~eLavqive~c~~~r~~nGGii~ 118 (254)
++.+++....|=....+.|..+ +|..++.++|.+|... ++..+....-..+.|.|+
T Consensus 9 i~el~~~F~~~D~d~~G~I~~~-----El~~~l~~~~~~~~~~-------------------~~~~~~~~~d~~~~g~i~ 64 (148)
T 2lmt_A 9 IAEFKDAFVQFDKEGTGKIATR-----ELGTLMRTLGQNPTEA-------------------ELQDLIAEAENNNNGQLN 64 (148)
T ss_dssp HHHHHHHHHHHHCSSCCEEEGG-----GHHHHHHHHTCCCCHH-------------------HHHHHHHHHHTTSTTEEE
T ss_pred HHHHHHHHHHHcCCCCCeECHH-----HHHHHHHhcCCCchHH-------------------HHHHHHHhcccCCCCccc
Confidence 3444554444544445555433 4677788888886531 111222222233446666
Q ss_pred HHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHhhhhCCC
Q psy6552 119 LDELRTRLVKSRGKSLQHQDITNEDLLAAAKKLKIFGNG 157 (254)
Q Consensus 119 L~dl~~~~nr~Rg~~~~~~~IS~~Di~rA~~~L~~Lg~g 157 (254)
..+....+..... ...+++++.+|.+.+..=|.|
T Consensus 65 ~~ef~~~~~~~~~-----~~~~~~~l~~aF~~~D~d~~G 98 (148)
T 2lmt_A 65 FTEFCGIMAKQMR-----ETDTEEEMREAFKIFDRDGDG 98 (148)
T ss_dssp HHHHHHHHHHTTT-----TTTTHHHHHHHHHHHHSSCSS
T ss_pred HHHHHHHHHHHhc-----ccCcHHHHHHHHHHHCCCCcC
Confidence 6666555544321 234555566665555544444
No 153
>3lmm_A Uncharacterized protein; multi-domained alpha-beta protein, structural genomics, PSI- 2, protein structure initiative; 3.00A {Corynebacterium diphtheriae}
Probab=79.72 E-value=2.3 Score=41.47 Aligned_cols=110 Identities=15% Similarity=0.077 Sum_probs=27.0
Q ss_pred CceeHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHhhh--hC-CCeEEEEeCCceEEEEcc------C-----------
Q psy6552 115 GLILLDELRTRLVKSRGKSLQHQDITNEDLLAAAKKLKI--FG-NGFSIIPIGQGQYLVQSI------P----------- 174 (254)
Q Consensus 115 Gii~L~dl~~~~nr~Rg~~~~~~~IS~~Di~rA~~~L~~--Lg-~g~~l~~~~sg~~vv~s~------p----------- 174 (254)
+-|+..++...+ .+|+.++.++++.|.. ++ .|+ |...+ +...+... +
T Consensus 443 ~~it~~~la~~l-----------~~s~~~~~~~L~~L~~~~~~~~gl-ie~~g-~~y~L~~~~~~~~~~~~~~~~~~~~~ 509 (583)
T 3lmm_A 443 PFITIDVVARGL-----------QSGKEAARNALEAARQTTVAGAPL-IIAHD-GVWLLGNACREILRKVEPSPFSPVRY 509 (583)
T ss_dssp SSBCHHHHHHHH-----------TSCHHHHHHHHHHHHTCEETTEES-EEEET-TEEEECHHHHHHHTSCC---------
T ss_pred CCcCHHHHHHHh-----------CcCHHHHHHHHHHHHhhhccccce-EEEeC-CEEEECHHHHHHhccccccccccccc
Confidence 346666665554 3699999999999976 22 333 33334 54444321 0
Q ss_pred CCCChh--HHHHHHHhhccCCCcccHHHHHHhcCCCHHHHHHHHHHHHHcCcEEEeCCCCCcccceecc
Q psy6552 175 GELSLD--HSLVLQQVASKNEAHISVSVLNNELNWSTERAQHALDFMVQEGYAWIDTQSPQEHLYWFPS 241 (254)
Q Consensus 175 ~els~D--~~~il~l~~~~~~g~vt~~~l~~~l~ws~~ra~~~L~~l~~~G~lwvD~q~~~e~~yw~p~ 241 (254)
...+.+ ...|++.+. ..|.+|..++++.+|.+...|...|..|+++|++-..-. +...+|.+.
T Consensus 510 ~~~~~~~~~~~I~~~l~--~~g~it~~di~~l~~ls~~qa~~~L~~Lv~~G~l~~~G~--gr~t~Y~~~ 574 (583)
T 3lmm_A 510 LSTDQAELTNAAMLWLS--EVGDLATSDLMAMCGVSRGTAKACVDGLVDEERVVAVGG--GRSRRYRLV 574 (583)
T ss_dssp ---------------------------------------------------------------------
T ss_pred ccCChhHHHHHHHHHHH--HcCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCcEEEeCC--CCceEEEEe
Confidence 001111 245778887 468999999999999999999999999999999855433 445555544
No 154
>1bja_A Transcription regulatory protein MOTA; activation domain, middle mode transcription, alpha helical structure, transcription regulation; 2.19A {Enterobacteria phage T4} SCOP: a.4.5.9 PDB: 1i1s_A
Probab=79.64 E-value=3.8 Score=30.63 Aligned_cols=52 Identities=10% Similarity=0.200 Sum_probs=43.1
Q ss_pred CCCChhHHHHHHHhhccCCCcccHHHHHH-hcCCCHHHHHHHHHHHHHcCcEEEe
Q psy6552 175 GELSLDHSLVLQQVASKNEAHISVSVLNN-ELNWSTERAQHALDFMVQEGYAWID 228 (254)
Q Consensus 175 ~els~D~~~il~l~~~~~~g~vt~~~l~~-~l~ws~~ra~~~L~~l~~~G~lwvD 228 (254)
..++.-|-.+|-.+.. .|++|+.+|++ .++.+..-.-.-|+-|+++|++=.|
T Consensus 12 ~~L~~~QfsiL~~L~~--~~~~t~~~Lae~~l~~drstvsrnl~~L~r~GlVe~~ 64 (95)
T 1bja_A 12 DVLNEKTATILITIAK--KDFITAAEVREVHPDLGNAVVNSNIGVLIKKGLVEKS 64 (95)
T ss_dssp TSSCHHHHHHHHHHHH--STTBCHHHHHHTCTTSCHHHHHHHHHHHHTTTSEEEE
T ss_pred cCCCHHHHHHHHHHHH--CCCCCHHHHHHHHhcccHHHHHHHHHHHHHCCCeecC
Confidence 4577777777766663 57999999999 9999999999999999999999733
No 155
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=79.58 E-value=5.6 Score=30.77 Aligned_cols=53 Identities=19% Similarity=0.189 Sum_probs=43.2
Q ss_pred ChhHHHHHHHhhccCC-CcccHHHHHHhc-----CCCHHHHHHHHHHHHHcCcEEEeCCC
Q psy6552 178 SLDHSLVLQQVASKNE-AHISVSVLNNEL-----NWSTERAQHALDFMVQEGYAWIDTQS 231 (254)
Q Consensus 178 s~D~~~il~l~~~~~~-g~vt~~~l~~~l-----~ws~~ra~~~L~~l~~~G~lwvD~q~ 231 (254)
+.--..||++.... . +.+|+.+|.+.+ +++..=.-..|+.|++.|++-.-...
T Consensus 17 T~qR~~Il~~L~~~-~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~~~~ 75 (136)
T 1mzb_A 17 TLPRVKILQMLDSA-EQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLVVRHNFD 75 (136)
T ss_dssp CHHHHHHHHHHHCC--CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEEEECSS
T ss_pred CHHHHHHHHHHHhC-CCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcEEEEEeC
Confidence 33446778887744 5 799999999988 89999999999999999999877653
No 156
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=79.49 E-value=3.4 Score=35.74 Aligned_cols=58 Identities=9% Similarity=0.209 Sum_probs=47.0
Q ss_pred CCCCChhHHHHHHHhhccCCCcccHHHHHHhcCCCHHHHHHHHHHHHHcCcEEEeCCC
Q psy6552 174 PGELSLDHSLVLQQVASKNEAHISVSVLNNELNWSTERAQHALDFMVQEGYAWIDTQS 231 (254)
Q Consensus 174 p~els~D~~~il~l~~~~~~g~vt~~~l~~~l~ws~~ra~~~L~~l~~~G~lwvD~q~ 231 (254)
+..++..|-.||...-..+.+++|..+|++.++.++.-....|+.|++.|++.+--.+
T Consensus 29 ~~~lt~~q~~vL~~L~~~~~~~~~~~el~~~l~~~~~t~t~~l~rLe~~G~i~R~~~~ 86 (250)
T 1p4x_A 29 EVDMTIKEFILLTYLFHQQENTLPFKKIVSDLCYKQSDLVQHIKVLVKHSYISKVRSK 86 (250)
T ss_dssp TCSSCHHHHHHHHHHHSCSCSEEEHHHHHHHSSSCGGGTHHHHHHHHHTTSCEEEECS
T ss_pred hcCCCHHHHHHHHHHHhcCCCCcCHHHHHHHHCCCHhhHHHHHHHHHHCCCEEecCCC
Confidence 3447777887877776322368999999999999999999999999999999886544
No 157
>3by6_A Predicted transcriptional regulator; structural genomics, PSI-2, MCSG, structure initiative, midwest center for structural genomic binding; 2.20A {Oenococcus oeni}
Probab=78.91 E-value=2.7 Score=32.34 Aligned_cols=38 Identities=8% Similarity=-0.040 Sum_probs=33.8
Q ss_pred CCcc-cHHHHHHhcCCCHHHHHHHHHHHHHcCcEEEeCC
Q psy6552 193 EAHI-SVSVLNNELNWSTERAQHALDFMVQEGYAWIDTQ 230 (254)
Q Consensus 193 ~g~v-t~~~l~~~l~ws~~ra~~~L~~l~~~G~lwvD~q 230 (254)
+..+ |..+|++.+|.|..-++++|..|+.+|++-+-..
T Consensus 32 G~~lPse~~La~~~~vSr~tvr~Al~~L~~~Gli~~~~g 70 (126)
T 3by6_A 32 NDQLPSVRETALQEKINPNTVAKAYKELEAQKVIRTIPG 70 (126)
T ss_dssp TCEECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETT
T ss_pred CCcCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEecC
Confidence 3356 9999999999999999999999999999987654
No 158
>3t8r_A Staphylococcus aureus CYMR; transcriptional regulator protein, dimer, sulfenic acid, UNK function; 1.70A {Staphylococcus aureus} PDB: 3t8t_A
Probab=78.46 E-value=3.9 Score=32.17 Aligned_cols=43 Identities=14% Similarity=0.142 Sum_probs=35.2
Q ss_pred HHHhhccCCCcccHHHHHHhcCCCHHHHHHHHHHHHHcCcEEE
Q psy6552 185 LQQVASKNEAHISVSVLNNELNWSTERAQHALDFMVQEGYAWI 227 (254)
Q Consensus 185 l~l~~~~~~g~vt~~~l~~~l~ws~~ra~~~L~~l~~~G~lwv 227 (254)
+.++.....+.+|..+|++.+++++.-....|..|.+.|++--
T Consensus 18 ~~La~~~~~~~~s~~~IA~~~~i~~~~l~kil~~L~~aGlv~s 60 (143)
T 3t8r_A 18 ISLAKKEGQGCISLKSIAEENNLSDLYLEQLVGPLRNAGLIRS 60 (143)
T ss_dssp HHHHTTTTSCCEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHhCCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCEEEe
Confidence 4455432235799999999999999999999999999999654
No 159
>3tqn_A Transcriptional regulator, GNTR family; regulatory functions; 2.80A {Coxiella burnetii}
Probab=78.39 E-value=2.6 Score=31.65 Aligned_cols=36 Identities=11% Similarity=0.104 Sum_probs=32.6
Q ss_pred cc-cHHHHHHhcCCCHHHHHHHHHHHHHcCcEEEeCC
Q psy6552 195 HI-SVSVLNNELNWSTERAQHALDFMVQEGYAWIDTQ 230 (254)
Q Consensus 195 ~v-t~~~l~~~l~ws~~ra~~~L~~l~~~G~lwvD~q 230 (254)
.+ |..+|++.||.|..-++++|..|+++|++-+...
T Consensus 32 ~lPs~~~La~~~~vSr~tvr~al~~L~~~Gli~~~~~ 68 (113)
T 3tqn_A 32 MIPSIRKISTEYQINPLTVSKAYQSLLDDNVIEKRRG 68 (113)
T ss_dssp EECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETT
T ss_pred cCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEecC
Confidence 45 9999999999999999999999999999877644
No 160
>3lwf_A LIN1550 protein, putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG; HET: SO4; 2.06A {Listeria innocua}
Probab=78.39 E-value=3.9 Score=33.02 Aligned_cols=46 Identities=13% Similarity=0.112 Sum_probs=37.4
Q ss_pred HHHhhccCCCcccHHHHHHhcCCCHHHHHHHHHHHHHcCcEEEeCC
Q psy6552 185 LQQVASKNEAHISVSVLNNELNWSTERAQHALDFMVQEGYAWIDTQ 230 (254)
Q Consensus 185 l~l~~~~~~g~vt~~~l~~~l~ws~~ra~~~L~~l~~~G~lwvD~q 230 (254)
+.+|...+.+.+|..+|++.+++++.-.+..|..|.+.|++--=..
T Consensus 34 ~~LA~~~~~~~~s~~eIA~~~~i~~~~l~kil~~L~~aGlv~s~rG 79 (159)
T 3lwf_A 34 LELAKRIGDGPISLRSIAQDKNLSEHYLEQLIGPLRNAGIVKSIRG 79 (159)
T ss_dssp HHHHHTTTSCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECS
T ss_pred HHHHhcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCeEEEecC
Confidence 4556532245799999999999999999999999999999765543
No 161
>4ham_A LMO2241 protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, winged helix-turn-helix, four helix bundle; 1.91A {Listeria monocytogenes}
Probab=77.91 E-value=2.7 Score=32.54 Aligned_cols=37 Identities=8% Similarity=0.080 Sum_probs=33.3
Q ss_pred Ccc-cHHHHHHhcCCCHHHHHHHHHHHHHcCcEEEeCC
Q psy6552 194 AHI-SVSVLNNELNWSTERAQHALDFMVQEGYAWIDTQ 230 (254)
Q Consensus 194 g~v-t~~~l~~~l~ws~~ra~~~L~~l~~~G~lwvD~q 230 (254)
-.+ |..+|++.||.|..-.+++|..|+.+|++-.-..
T Consensus 36 ~~LPser~La~~~gVSr~tVReAl~~L~~eGlv~~~~g 73 (134)
T 4ham_A 36 EKILSIREFASRIGVNPNTVSKAYQELERQEVIITVKG 73 (134)
T ss_dssp CEECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETT
T ss_pred CCCccHHHHHHHHCCCHHHHHHHHHHHHHCCcEEEEcC
Confidence 356 8999999999999999999999999999987654
No 162
>2ek5_A Predicted transcriptional regulators; helix-turn-helix, interwined alpha helices; 2.20A {Corynebacterium glutamicum atcc 13032} PDB: 2du9_A
Probab=77.64 E-value=3.4 Score=31.97 Aligned_cols=37 Identities=16% Similarity=0.246 Sum_probs=33.1
Q ss_pred Ccc-cHHHHHHhcCCCHHHHHHHHHHHHHcCcEEEeCC
Q psy6552 194 AHI-SVSVLNNELNWSTERAQHALDFMVQEGYAWIDTQ 230 (254)
Q Consensus 194 g~v-t~~~l~~~l~ws~~ra~~~L~~l~~~G~lwvD~q 230 (254)
..+ |..+|++.||+|..-.+++|..|+.+|++.+-..
T Consensus 26 ~~LPse~~La~~~gvSr~tVr~Al~~L~~~Gli~~~~g 63 (129)
T 2ek5_A 26 QRVPSTNELAAFHRINPATARNGLTLLVEAGILYKKRG 63 (129)
T ss_dssp SCBCCHHHHHHHTTCCHHHHHHHHHHHHTTTSEEEETT
T ss_pred CcCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEecC
Confidence 346 9999999999999999999999999999887643
No 163
>1stz_A Heat-inducible transcription repressor HRCA homol; circe element, structural genomics, BSGC structure FUN NIH, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.51 d.110.2.3
Probab=77.61 E-value=3.8 Score=37.13 Aligned_cols=52 Identities=15% Similarity=0.188 Sum_probs=44.6
Q ss_pred CChhHHHHHH-----HhhccCCCcccHHHHHHhc--CCCHHHHHHHHHHHHHcCcEEEeCC
Q psy6552 177 LSLDHSLVLQ-----QVASKNEAHISVSVLNNEL--NWSTERAQHALDFMVQEGYAWIDTQ 230 (254)
Q Consensus 177 ls~D~~~il~-----l~~~~~~g~vt~~~l~~~l--~ws~~ra~~~L~~l~~~G~lwvD~q 230 (254)
+++=+..||+ ..+ ..+.|+..+|++.+ ++|++=.+..|..|++.|++-+=..
T Consensus 15 l~eR~~~IL~~i~~~yl~--~~~pV~s~~La~~~~l~VS~aTIRrDL~~LE~~GlL~r~Hg 73 (338)
T 1stz_A 15 LNDRQRKVLYCIVREYIE--NKKPVSSQRVLEVSNIEFSSATIRNDMKKLEYLGYIYQPHT 73 (338)
T ss_dssp CCHHHHHHHHHHHHHHHH--HCSCBCHHHHHHHSCCCSCHHHHHHHHHHHHHTTSEECCSS
T ss_pred HHHHHHHHHHHHHHHHHH--cCCCccHHHHHHHhCCCCCHHHHHHHHHHHHHCCCEEEccC
Confidence 4556788888 566 46899999999999 9999999999999999999987554
No 164
>2kmu_A ATP-dependent DNA helicase Q4; recql4, DNA-replication, homeodomain-like, ATP-BIN cataract, craniosynostosis, disease mutation, dwarfism; NMR {Homo sapiens}
Probab=77.22 E-value=3.9 Score=27.67 Aligned_cols=23 Identities=13% Similarity=0.424 Sum_probs=19.5
Q ss_pred HHHHHh-----hhhhhcCHH-HHHHHHHH
Q psy6552 48 SFASEY-----KNEIKKDAQ-FRRHFQEM 70 (254)
Q Consensus 48 ~FA~kh-----~~~I~~dp~-fr~~f~~m 70 (254)
.|+.+| +++|+.||+ .+..+..+
T Consensus 19 ~F~~~~GRkP~k~DIk~~p~~I~~~YK~Y 47 (56)
T 2kmu_A 19 AFRRQRGRRPSQDDVEAAPEETRALYREY 47 (56)
T ss_dssp HHHHHTCSCCCHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHhCCCCCHHHHHcCHHHHHHHHHHH
Confidence 789999 689999999 88777765
No 165
>2ia2_A Putative transcriptional regulator; SAD, PSI-2, structural genomics, structure initiative, midwest center for structural genomic transcription; 2.10A {Rhodococcus SP}
Probab=76.86 E-value=2.4 Score=36.60 Aligned_cols=45 Identities=18% Similarity=0.232 Sum_probs=38.0
Q ss_pred HHHHHhhccCCCcccHHHHHHhcCCCHHHHHHHHHHHHHcCcEEEe
Q psy6552 183 LVLQQVASKNEAHISVSVLNNELNWSTERAQHALDFMVQEGYAWID 228 (254)
Q Consensus 183 ~il~l~~~~~~g~vt~~~l~~~l~ws~~ra~~~L~~l~~~G~lwvD 228 (254)
.||++.... .+.+|..+|++.+|.++.-+-..|..|++.|++..|
T Consensus 25 ~iL~~l~~~-~~~~~~~eia~~~gl~~stv~r~l~tL~~~G~v~~~ 69 (265)
T 2ia2_A 25 AVIRCFDHR-NQRRTLSDVARATDLTRATARRFLLTLVELGYVATD 69 (265)
T ss_dssp HHHHTCCSS-CSSEEHHHHHHHHTCCHHHHHHHHHHHHHHTSEEES
T ss_pred HHHHHHHhC-CCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEec
Confidence 345544422 467999999999999999999999999999999997
No 166
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=76.74 E-value=6.5 Score=31.05 Aligned_cols=59 Identities=15% Similarity=0.188 Sum_probs=45.3
Q ss_pred hHHHHHHHhhccCCCcccHHHHHHhc-----CCCHHHHHHHHHHHHHcCcEEEeCCCCCcccceec
Q psy6552 180 DHSLVLQQVASKNEAHISVSVLNNEL-----NWSTERAQHALDFMVQEGYAWIDTQSPQEHLYWFP 240 (254)
Q Consensus 180 D~~~il~l~~~~~~g~vt~~~l~~~l-----~ws~~ra~~~L~~l~~~G~lwvD~q~~~e~~yw~p 240 (254)
--..||++.... .+.+|+.+|.+.+ +++..=.-..|+.|++.|++-.=+.. +...+|-.
T Consensus 28 qR~~IL~~l~~~-~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~~~~-~~~~~Y~~ 91 (150)
T 2xig_A 28 QREEVVSVLYRS-GTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFISVLETS-KSGRRYEI 91 (150)
T ss_dssp HHHHHHHHHHHC-SSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSEEEEEET-TTEEEEEE
T ss_pred HHHHHHHHHHhC-CCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcEEEEEeC-CCceEEEe
Confidence 346778877654 6799999999888 89999999999999999999776543 23344443
No 167
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=76.41 E-value=6.6 Score=30.59 Aligned_cols=59 Identities=12% Similarity=0.065 Sum_probs=45.2
Q ss_pred HHHHHHHhhccCCCcccHHHHHHhc-----CCCHHHHHHHHHHHHHcCcEEEeCCCCCcccceecc
Q psy6552 181 HSLVLQQVASKNEAHISVSVLNNEL-----NWSTERAQHALDFMVQEGYAWIDTQSPQEHLYWFPS 241 (254)
Q Consensus 181 ~~~il~l~~~~~~g~vt~~~l~~~l-----~ws~~ra~~~L~~l~~~G~lwvD~q~~~e~~yw~p~ 241 (254)
-..||++.... .+.+|+.+|.+.+ +++.+=.-..|+.|++.|++-.-+.. +...+|..+
T Consensus 16 R~~Il~~L~~~-~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~~~~-~g~~~Y~~~ 79 (139)
T 3mwm_A 16 RAAVSAALQEV-EEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGEVDVLRTA-EGESVYRRC 79 (139)
T ss_dssp HHHHHHHHTTC-SSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSSEEEECT-TSCEEEECC
T ss_pred HHHHHHHHHhC-CCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCCEEEEEcC-CCceEEEEC
Confidence 35678877654 6799999999877 79999999999999999999876653 233444433
No 168
>1j5y_A Transcriptional regulator, biotin repressor famil; structural genomics, TM1602, BIOT repressor family, JCSG, conserved hypothetical protein; 2.30A {Thermotoga maritima} SCOP: a.4.5.1 d.94.2.1
Probab=75.96 E-value=4.2 Score=33.19 Aligned_cols=45 Identities=16% Similarity=0.244 Sum_probs=38.2
Q ss_pred HHHHHHhhccCCCcccHHHHHHhcCCCHHHHHHHHHHHHHcCc-EEE
Q psy6552 182 SLVLQQVASKNEAHISVSVLNNELNWSTERAQHALDFMVQEGY-AWI 227 (254)
Q Consensus 182 ~~il~l~~~~~~g~vt~~~l~~~l~ws~~ra~~~L~~l~~~G~-lwv 227 (254)
..|+++.... .+++|..+|++.+|.|..-+...|..|.+.|+ +..
T Consensus 24 ~~Il~~L~~~-~~~~s~~eLa~~l~vS~~Ti~rdi~~L~~~G~~I~~ 69 (187)
T 1j5y_A 24 KSIVRILERS-KEPVSGAQLAEELSVSRQVIVQDIAYLRSLGYNIVA 69 (187)
T ss_dssp HHHHHHHHHC-SSCBCHHHHHHHHTSCHHHHHHHHHHHHHHTCCCEE
T ss_pred HHHHHHHHHc-CCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEE
Confidence 4567777643 46799999999999999999999999999998 655
No 169
>3go5_A Multidomain protein with S1 RNA-binding domains; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.40A {Streptococcus pneumoniae}
Probab=75.88 E-value=6.5 Score=34.82 Aligned_cols=72 Identities=17% Similarity=0.144 Sum_probs=56.8
Q ss_pred eEEEEeC--CceEEEEccCC---CCChhHHHHHHHhhccCCCc------ccHHHHHHhcCCCHHHHHHHHHHHHHcCcEE
Q psy6552 158 FSIIPIG--QGQYLVQSIPG---ELSLDHSLVLQQVASKNEAH------ISVSVLNNELNWSTERAQHALDFMVQEGYAW 226 (254)
Q Consensus 158 ~~l~~~~--sg~~vv~s~p~---els~D~~~il~l~~~~~~g~------vt~~~l~~~l~ws~~ra~~~L~~l~~~G~lw 226 (254)
.+|+.++ .|+.-+...|. .+++|...||+..+.+ +|+ .+|+++.+.||.|+.-.+.+|-.|..+|.+-
T Consensus 198 ~~V~~id~~d~kI~LSlk~~~~~~~~~~a~~il~~L~~~-~G~l~~~DkS~pe~I~~~f~~SK~~FKrAiG~L~K~~~I~ 276 (285)
T 3go5_A 198 ARVIGFREVDRTLNLSLKPRSFEMLENDAQMILTYLESN-GGFMTLNDKSSPDDIKATFGISKGQFKKALGGLMKAGKIK 276 (285)
T ss_dssp EEEEEEETTTTEEEEECSCCCCCCCCHHHHHHHHHHHHT-TTEESCCTTSCHHHHHHHHSSCHHHHHHHHHHHHHTTCEE
T ss_pred EEEEEEECCCCeEEEEeChhhhhccchHHHHHHHHHHhc-CCeeccCCCCCHHHHHHHhCcCHHHHHHHHHHHhhCCcEE
Confidence 4455554 35655555552 5777888999998865 453 6899999999999999999999999999999
Q ss_pred EeCC
Q psy6552 227 IDTQ 230 (254)
Q Consensus 227 vD~q 230 (254)
+++.
T Consensus 277 ~~~~ 280 (285)
T 3go5_A 277 QDQF 280 (285)
T ss_dssp EETT
T ss_pred EcCC
Confidence 9874
No 170
>3rkx_A Biotin-[acetyl-COA-carboxylase] ligase; biotin protein ligase, 3 domains, enzyme DNA binding, biotin coupling domains; 2.10A {Staphylococcus aureus} PDB: 3rir_A* 3rkw_A 3rky_A* 3v7c_A* 3v7s_A* 3v8j_A 3v7r_A 3v8k_A* 3v8l_A* 4dq2_A*
Probab=75.64 E-value=4.2 Score=36.49 Aligned_cols=47 Identities=23% Similarity=0.188 Sum_probs=39.0
Q ss_pred HHHHHHHhhccCCCcccHHHHHHhcCCCHHHHHHHHHHHHHcCcEEE
Q psy6552 181 HSLVLQQVASKNEAHISVSVLNNELNWSTERAQHALDFMVQEGYAWI 227 (254)
Q Consensus 181 ~~~il~l~~~~~~g~vt~~~l~~~l~ws~~ra~~~L~~l~~~G~lwv 227 (254)
...||++....++.++|..+|++.+|.|..-...+|..|.+.|+.-.
T Consensus 5 ~~~iL~~L~~~~g~~~Sg~eLa~~lgvSr~aV~k~i~~L~~~G~~i~ 51 (323)
T 3rkx_A 5 SQDVLQLLYKNKPNYISGQSIAESLNISRTAVKKVIDQLKLEGCKID 51 (323)
T ss_dssp HHHHHHHHHHHTTSCBCHHHHHHHHTSCHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHhCCCCccCHHHHHHHHCCCHHHHHHHHHHHHhcCCeEE
Confidence 45678777533356999999999999999999999999999999443
No 171
>1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} SCOP: a.4.5.1 b.34.1.1 d.104.1.2 PDB: 1bib_A* 1hxd_A* 2ewn_A*
Probab=75.48 E-value=4.8 Score=35.87 Aligned_cols=46 Identities=15% Similarity=0.091 Sum_probs=40.3
Q ss_pred HHHHHHHhhccCCCcccHHHHHHhcCCCHHHHHHHHHHHHHcCcEEEe
Q psy6552 181 HSLVLQQVASKNEAHISVSVLNNELNWSTERAQHALDFMVQEGYAWID 228 (254)
Q Consensus 181 ~~~il~l~~~~~~g~vt~~~l~~~l~ws~~ra~~~L~~l~~~G~lwvD 228 (254)
...|+++.. ..+++|..+|++.+|.|..-....|..|.+.|+.-.-
T Consensus 7 ~~~Il~~L~--~~~~~s~~eLa~~l~vS~~ti~r~l~~L~~~G~~i~~ 52 (321)
T 1bia_A 7 PLKLIALLA--NGEFHSGEQLGETLGMSRAAINKHIQTLRDWGVDVFT 52 (321)
T ss_dssp HHHHHHHHT--TSSCBCHHHHHHHHTSCHHHHHHHHHHHHHTTCCCEE
T ss_pred HHHHHHHHH--cCCCcCHHHHHHHHCCCHHHHHHHHHHHHhCCCcEEE
Confidence 567788887 4689999999999999999999999999999987543
No 172
>3neu_A LIN1836 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; 1.58A {Listeria innocua}
Probab=75.38 E-value=3.5 Score=31.58 Aligned_cols=34 Identities=18% Similarity=0.270 Sum_probs=31.8
Q ss_pred cHHHHHHhcCCCHHHHHHHHHHHHHcCcEEEeCC
Q psy6552 197 SVSVLNNELNWSTERAQHALDFMVQEGYAWIDTQ 230 (254)
Q Consensus 197 t~~~l~~~l~ws~~ra~~~L~~l~~~G~lwvD~q 230 (254)
|..+|++.||.|..-++++|..|+++|++-.-..
T Consensus 39 s~~~La~~~~vSr~tvr~Al~~L~~~G~i~~~~g 72 (125)
T 3neu_A 39 SVREMGVKLAVNPNTVSRAYQELERAGYIYAKRG 72 (125)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETT
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHHHCCeEEEecC
Confidence 7999999999999999999999999999988754
No 173
>3df8_A Possible HXLR family transcriptional factor; APC89000, structural genomics, midwest center for structural genomics, MCSG; 1.65A {Thermoplasma volcanium} SCOP: a.4.5.0
Probab=75.16 E-value=6.6 Score=29.26 Aligned_cols=37 Identities=5% Similarity=0.087 Sum_probs=33.2
Q ss_pred Cccc--HHHHHHhc-CCCHHHHHHHHHHHHHcCcEEEeCC
Q psy6552 194 AHIS--VSVLNNEL-NWSTERAQHALDFMVQEGYAWIDTQ 230 (254)
Q Consensus 194 g~vt--~~~l~~~l-~ws~~ra~~~L~~l~~~G~lwvD~q 230 (254)
|..+ +.+|++.+ |++..-....|..|++.|++-+...
T Consensus 39 g~~~~~~~eL~~~l~gis~~~ls~~L~~Le~~GlV~r~~~ 78 (111)
T 3df8_A 39 GSTRQNFNDIRSSIPGISSTILSRRIKDLIDSGLVERRSG 78 (111)
T ss_dssp SSSCBCHHHHHHTSTTCCHHHHHHHHHHHHHTTSEEEEES
T ss_pred CCCCCCHHHHHHHccCCCHHHHHHHHHHHHHCCCEEEeec
Confidence 4455 99999999 9999999999999999999988754
No 174
>3c7j_A Transcriptional regulator, GNTR family; structural genomics, PSI-2, protein structure initiative, midwest center for STR genomics; HET: MSE; 2.10A {Pseudomonas syringae PV}
Probab=74.77 E-value=3.7 Score=34.85 Aligned_cols=38 Identities=13% Similarity=0.122 Sum_probs=34.9
Q ss_pred CCcccHHHHHHhcCCCHHHHHHHHHHHHHcCcEEEeCC
Q psy6552 193 EAHISVSVLNNELNWSTERAQHALDFMVQEGYAWIDTQ 230 (254)
Q Consensus 193 ~g~vt~~~l~~~l~ws~~ra~~~L~~l~~~G~lwvD~q 230 (254)
+..++..+|++.||.|..-.+++|..|+.+|++-+-..
T Consensus 47 G~~L~e~~La~~lgVSr~~VReAL~~L~~~Glv~~~~~ 84 (237)
T 3c7j_A 47 GTALRQQELATLFGVSRMPVREALRQLEAQSLLRVETH 84 (237)
T ss_dssp TCBCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEETT
T ss_pred cCeeCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEeCC
Confidence 56789999999999999999999999999999988744
No 175
>2qc0_A Uncharacterized protein; NP_719793.1, uncharacterized protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Shewanella oneidensis} PDB: 3eqx_A*
Probab=74.50 E-value=4.1 Score=37.21 Aligned_cols=54 Identities=9% Similarity=-0.031 Sum_probs=42.7
Q ss_pred HHHHHHhhccCCCcccHHHHHHhcCCCHHHHHHHHHHHHHcCcEEEeCCCCCccccee
Q psy6552 182 SLVLQQVASKNEAHISVSVLNNELNWSTERAQHALDFMVQEGYAWIDTQSPQEHLYWF 239 (254)
Q Consensus 182 ~~il~l~~~~~~g~vt~~~l~~~l~ws~~ra~~~L~~l~~~G~lwvD~q~~~e~~yw~ 239 (254)
..+++.+. ..+++|.+++++.+|.|..-|+..|..|++.|++-.... +...||.
T Consensus 300 ~~ll~~l~--~~p~~t~~~~~~~~gvS~~Ta~r~L~~L~e~GiL~~~~~--gR~~~y~ 353 (373)
T 2qc0_A 300 HELVQVIF--EQPYCRIQNLVESGLAKRQTASVYLKQLCDIGVLEEVQS--GKEKLFV 353 (373)
T ss_dssp HHHHHHHH--HCSEEEHHHHHHTSSSCHHHHHHHHHHHHHTTSCEEC----CCSCEEE
T ss_pred HHHHHHHH--hCCcccHHHHHHHhCCCHHHHHHHHHHHHHCCcEEEecC--CCceEEe
Confidence 45666665 358999999999999999999999999999999988754 3345554
No 176
>2obp_A Putative DNA-binding protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.70A {Ralstonia eutropha} SCOP: a.4.5.71
Probab=74.35 E-value=13 Score=27.59 Aligned_cols=44 Identities=9% Similarity=0.060 Sum_probs=38.3
Q ss_pred CCcccHHHHHHhcCCCHHHHHHHHHHHHHcCcEEEeCCCCCcccce
Q psy6552 193 EAHISVSVLNNELNWSTERAQHALDFMVQEGYAWIDTQSPQEHLYW 238 (254)
Q Consensus 193 ~g~vt~~~l~~~l~ws~~ra~~~L~~l~~~G~lwvD~q~~~e~~yw 238 (254)
+|.++..+|++.++|+.......|..|++.|++-+... .++..|
T Consensus 34 g~~~s~~eLa~~l~l~~stLsR~l~rLe~~GLV~r~~~--~D~R~~ 77 (96)
T 2obp_A 34 ATPWSLPKIAKRAQLPMSVLRRVLTQLQAAGLADVSVE--ADGRGH 77 (96)
T ss_dssp CCCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEC--TTSCEE
T ss_pred CCCcCHHHHHHHhCCchhhHHHHHHHHHHCCCEEeecC--CCCcee
Confidence 56799999999999999999999999999999999655 345556
No 177
>1ylf_A RRF2 family protein; structural genomics, transcription regulator, P protein structure initiative; 2.50A {Bacillus cereus atcc 14579} SCOP: a.4.5.55
Probab=74.25 E-value=4.5 Score=31.82 Aligned_cols=42 Identities=7% Similarity=0.201 Sum_probs=35.4
Q ss_pred HHHhhccCCCcccHHHHHHhcCCCHHHHHHHHHHHHHcCcEEE
Q psy6552 185 LQQVASKNEAHISVSVLNNELNWSTERAQHALDFMVQEGYAWI 227 (254)
Q Consensus 185 l~l~~~~~~g~vt~~~l~~~l~ws~~ra~~~L~~l~~~G~lwv 227 (254)
+.++.. ..+.+|..+|++.+++++.-....|..|.+.|++--
T Consensus 21 ~~La~~-~~~~~~~~~iA~~~~i~~~~l~kil~~L~~~Glv~s 62 (149)
T 1ylf_A 21 SILKNN-PSSLCTSDYMAESVNTNPVVIRKIMSYLKQAGFVYV 62 (149)
T ss_dssp HHHHHS-CGGGCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHhC-CCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEE
Confidence 445553 246799999999999999999999999999999654
No 178
>2mys_C Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus gallus} SCOP: a.39.1.5 PDB: 1m8q_C* 1mvw_C* 1o18_F* 1o19_C* 1o1a_C* 1o1b_C* 1o1c_C* 1o1d_C* 1o1e_C* 1o1f_C* 1o1g_C*
Probab=74.04 E-value=13 Score=27.25 Aligned_cols=43 Identities=21% Similarity=0.224 Sum_probs=23.7
Q ss_pred hhcCCceeHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHhhhhCC
Q psy6552 111 YKNGGLILLDELRTRLVKSRGKSLQHQDITNEDLLAAAKKLKIFGN 156 (254)
Q Consensus 111 ~~nGGii~L~dl~~~~nr~Rg~~~~~~~IS~~Di~rA~~~L~~Lg~ 156 (254)
..+||.|+..|....+....... ..-+.+.+..+.+.+.+=|.
T Consensus 57 d~~~g~i~~~eF~~~~~~~~~~~---~~~~~~~~~~~F~~~D~d~~ 99 (149)
T 2mys_C 57 EMNAAAITFEEFLPMLQAAANNK---DQGTFEDFVEGLRVFDKEGN 99 (149)
T ss_pred cccCCcCcHHHHHHHHHHHhccC---CcchHHHHHHHHHHhCCCCC
Confidence 44558888888887776642111 12345555555555544333
No 179
>3sxy_A Transcriptional regulator, GNTR family; transcription factor, metal-binding, structur genomics, PSI-2, protein structure initiative; 1.65A {Thermotoga maritima} PDB: 3dbw_A 3fms_A*
Probab=73.99 E-value=3.6 Score=34.09 Aligned_cols=38 Identities=21% Similarity=0.236 Sum_probs=34.6
Q ss_pred CCcccHHHHHHhcCCCHHHHHHHHHHHHHcCcEEEeCC
Q psy6552 193 EAHISVSVLNNELNWSTERAQHALDFMVQEGYAWIDTQ 230 (254)
Q Consensus 193 ~g~vt~~~l~~~l~ws~~ra~~~L~~l~~~G~lwvD~q 230 (254)
+-.++..+|++.||.|..-.+++|..|+.+|++-+-..
T Consensus 33 G~~L~e~~La~~lgVSRtpVREAL~~L~~eGlv~~~~~ 70 (218)
T 3sxy_A 33 GEKLNVRELSEKLGISFTPVRDALLQLATEGLVKVVPR 70 (218)
T ss_dssp TCEECHHHHHHHHTCCHHHHHHHHHHHHHHTSEEEETT
T ss_pred CCEeCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEeCC
Confidence 44689999999999999999999999999999987744
No 180
>2v9v_A Selenocysteine-specific elongation factor; transcription, protein conformational change, transcription elongation factor SELB; 1.10A {Moorella thermoacetica} SCOP: a.4.5.35 a.4.5.35
Probab=73.53 E-value=26 Score=26.29 Aligned_cols=110 Identities=11% Similarity=0.071 Sum_probs=68.5
Q ss_pred HhhhhhhhcCCceeHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHhhhhCCCeEEEEeC--CceEEEEccCCCCChhHH
Q psy6552 105 VCLATNYKNGGLILLDELRTRLVKSRGKSLQHQDITNEDLLAAAKKLKIFGNGFSIIPIG--QGQYLVQSIPGELSLDHS 182 (254)
Q Consensus 105 ~c~~~r~~nGGii~L~dl~~~~nr~Rg~~~~~~~IS~~Di~rA~~~L~~Lg~g~~l~~~~--sg~~vv~s~p~els~D~~ 182 (254)
++......+|.-++.+++.... -.+++.+..++..|..-|. ++.++ ++..|+...- ...=..
T Consensus 6 ~l~~~L~~~~~~~~~~~l~~~~-----------~l~~~~l~~~l~~l~~~~~---~~~~~~~~~~~~~~~~~--~~~l~~ 69 (135)
T 2v9v_A 6 ILAQIIQEHREGLDWQEAATRA-----------SLSLEETRKLLQSMAAAGQ---VTLLRVENDLYAISTER--YQAWWQ 69 (135)
T ss_dssp HHHHHHHHCSSCEEHHHHHHHH-----------TCCHHHHHHHHHHHHHTTC---EEEEEETTEEEEEEHHH--HHHHHH
T ss_pred HHHHHHHHcCcCCCHHHHHHHh-----------CCCHHHHHHHHHHHHhCCc---EEEEecCCCeEEecHHH--HHHHHH
Confidence 3444444555545556665542 3578888888888765443 44554 1222442221 222234
Q ss_pred HHHHHhhc----c-CCCcccHHHHHHhc--CCCHHHHHHHHHHHHHcCcEEEeCC
Q psy6552 183 LVLQQVAS----K-NEAHISVSVLNNEL--NWSTERAQHALDFMVQEGYAWIDTQ 230 (254)
Q Consensus 183 ~il~l~~~----~-~~g~vt~~~l~~~l--~ws~~ra~~~L~~l~~~G~lwvD~q 230 (254)
.+++..+. . ...++..++|...+ ..+.......|+.|+++|.+-++..
T Consensus 70 ~l~~~L~~yH~~~P~~~G~~keeLr~~~~~~~~~~~~~~ll~~l~~~g~l~~~~~ 124 (135)
T 2v9v_A 70 AVTRALEEFHSRYPLRPGLAREELRSRYFSRLPARVYQALLEEWSREGRLQLAAN 124 (135)
T ss_dssp HHHHHHHHHHHHCTTSSCEEHHHHHHHHCTTSCHHHHHHHHHHHHHTTSEEECSS
T ss_pred HHHHHHHHHHHhCCCccCCCHHHHHHHhcccCCHHHHHHHHHHHHHCCCEEecCC
Confidence 55554432 1 25689999999875 4788999999999999999999854
No 181
>1hw1_A FADR, fatty acid metabolism regulator protein; helix-turn-helix, helix bundle, transcription; 1.50A {Escherichia coli} SCOP: a.4.5.6 a.78.1.1 PDB: 1hw2_A 1e2x_A 1h9g_A* 1h9t_A
Probab=73.47 E-value=4.3 Score=33.86 Aligned_cols=38 Identities=11% Similarity=0.189 Sum_probs=34.3
Q ss_pred CCcc-cHHHHHHhcCCCHHHHHHHHHHHHHcCcEEEeCC
Q psy6552 193 EAHI-SVSVLNNELNWSTERAQHALDFMVQEGYAWIDTQ 230 (254)
Q Consensus 193 ~g~v-t~~~l~~~l~ws~~ra~~~L~~l~~~G~lwvD~q 230 (254)
+..+ |..+|++.||.|..-.+++|..|+.+|++-+-..
T Consensus 28 G~~LPsE~eLa~~~gVSR~tVReAL~~L~~eGlv~~~~g 66 (239)
T 1hw1_A 28 GTILPAERELSELIGVTRTTLREVLQRLARDGWLTIQHG 66 (239)
T ss_dssp TSBCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETT
T ss_pred CCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCcEEEecC
Confidence 4467 8999999999999999999999999999988754
No 182
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=72.96 E-value=7.3 Score=30.72 Aligned_cols=52 Identities=19% Similarity=0.196 Sum_probs=42.8
Q ss_pred ChhHHHHHHHhhccCC-CcccHHHHHHhc-----CCCHHHHHHHHHHHHHcCcEEEeCC
Q psy6552 178 SLDHSLVLQQVASKNE-AHISVSVLNNEL-----NWSTERAQHALDFMVQEGYAWIDTQ 230 (254)
Q Consensus 178 s~D~~~il~l~~~~~~-g~vt~~~l~~~l-----~ws~~ra~~~L~~l~~~G~lwvD~q 230 (254)
+.--..||++.... . +.+|+.+|.+.+ +++..=.-..|+.|++.|++-.-..
T Consensus 16 T~qR~~Il~~L~~~-~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~~~ 73 (150)
T 2w57_A 16 TLPRLKILEVLQQP-ECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIVTRHHF 73 (150)
T ss_dssp CHHHHHHHHHHTSG-GGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSEEEEEC
T ss_pred CHHHHHHHHHHHhC-CCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcEEEEEe
Confidence 33446778887744 5 789999999888 8999999999999999999987655
No 183
>2f3o_A PFLD, PFL2, pyruvate formate-lyase 2; glycerol dehydratase, glycyl R hyperthermophilic, unknown function; HET: PGE; 2.90A {Archaeoglobus fulgidus}
Probab=72.71 E-value=48 Score=33.40 Aligned_cols=133 Identities=11% Similarity=0.137 Sum_probs=69.2
Q ss_pred hhhHHHhccHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhh---hh--cCHHHHHHHHHHHHHcCCCcc
Q psy6552 5 AGVGAIQKQKLEQEKYKDKGTSIQENQLEQLSQHLNTFRDKLESFASEYKNE---IK--KDAQFRRHFQEMCASIGVDPL 79 (254)
Q Consensus 5 vGi~~i~~~~~~~~~~~~~g~~l~~~~~~~L~~ql~~fk~~L~~FA~kh~~~---I~--~dp~fr~~f~~mc~~lGVdPl 79 (254)
-|+.||....+++.+....+..=..+...-+++.+-.. +.+..||..|... +. .||.-+.++.+|....+-+|.
T Consensus 166 ~G~~~li~~~~~~~~~~~~~~~~~~~k~~fy~A~~i~~-eavi~~a~Rya~la~e~A~~ed~~rk~EL~~ia~~~~~v~~ 244 (776)
T 2f3o_A 166 RGFRWFLEESERRIRALEESGVYEGEKYSFYQAAKIVS-EAVINYGLRYSKLAEELAESEDGERREELLKIAEICRKVPA 244 (776)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHTTCCTHHHHHHHHHHHHHHHTTT
T ss_pred hhHHHHHHHHHHHHHhcCCCCccchhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCcCcc
Confidence 58889987654433322211000011233445544444 4444677777432 21 188888999999999999999
Q ss_pred cCCCccccccccchhHHHHHHHHHHHhhhhhhhcCCceeH---HHHH-HHHHHhcCCCCCCCCCCHHHHHHHHHHh
Q psy6552 80 ASRKGFWSLLGMGDFYYELSVQIVEVCLATNYKNGGLILL---DELR-TRLVKSRGKSLQHQDITNEDLLAAAKKL 151 (254)
Q Consensus 80 ~s~kg~w~~lg~gdfy~eLavqive~c~~~r~~nGGii~L---~dl~-~~~nr~Rg~~~~~~~IS~~Di~rA~~~L 151 (254)
-..++||-.+- .-|+..|+++ .+.||.-|++ +.++ -.|.|---. ..||+++...-++.|
T Consensus 245 ~pa~tf~EAlQ-~~~f~~l~~~--------~E~ng~~~s~GR~Dq~L~Pyy~~Dl~~----G~lt~eeA~Eli~~f 307 (776)
T 2f3o_A 245 EKPETFWEAVQ-FVWLVQSALH--------QENYEQAISMGRIDQYLYPFFKKDIGE----GRINRELAFDILANL 307 (776)
T ss_dssp SCCCSHHHHHH-HHHHHHHHHH--------HHSCSSCEECCSHHHHSHHHHHHHTTT----TSSCHHHHHHHHHHH
T ss_pred CCCCCHHHHHH-HHHHHHHHHh--------hcCCCCcccCccHHHHHHHHHHhHHhc----CCCCHHHHHHHHHHH
Confidence 87776663110 1333333332 2246655554 3332 234443222 346776655555544
No 184
>3fwb_A Cell division control protein 31; gene gating, complex, cell cycle, cell division, mitosis, MR transport, nuclear pore complex, nucleus, phosphoprotein; 2.50A {Saccharomyces cerevisiae} SCOP: a.39.1.5 PDB: 2gv5_A 2doq_A 3fwc_A
Probab=72.04 E-value=16 Score=27.12 Aligned_cols=15 Identities=7% Similarity=0.208 Sum_probs=10.0
Q ss_pred HHHHHHHHHcCCCcc
Q psy6552 65 RHFQEMCASIGVDPL 79 (254)
Q Consensus 65 ~~f~~mc~~lGVdPl 79 (254)
.+|..++..+|+.|-
T Consensus 43 ~e~~~~l~~~~~~~~ 57 (161)
T 3fwb_A 43 HELKVAMKALGFELP 57 (161)
T ss_dssp HHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHcCCCCC
Confidence 366777777887643
No 185
>1z6r_A MLC protein; transcriptional repressor, ROK family protein, DNA binding P helix-turn-helix, phosphotransferase system; 2.70A {Escherichia coli} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 PDB: 3bp8_A
Probab=70.49 E-value=7 Score=35.40 Aligned_cols=45 Identities=9% Similarity=0.010 Sum_probs=40.6
Q ss_pred HHHHHHHhhccCCCcccHHHHHHhcCCCHHHHHHHHHHHHHcCcEEE
Q psy6552 181 HSLVLQQVASKNEAHISVSVLNNELNWSTERAQHALDFMVQEGYAWI 227 (254)
Q Consensus 181 ~~~il~l~~~~~~g~vt~~~l~~~l~ws~~ra~~~L~~l~~~G~lwv 227 (254)
...|+++.. ..|.+|..+|++.+|+|+.-....++.|+++|++--
T Consensus 18 ~~~il~~l~--~~~~~sr~~la~~~~ls~~tv~~~v~~L~~~g~i~~ 62 (406)
T 1z6r_A 18 AGAVYRLID--QLGPVSRIDLSRLAQLAPASITKIVHEMLEAHLVQE 62 (406)
T ss_dssp HHHHHHHHH--SSCSCCHHHHHHHTTCCHHHHHHHHHHHHHHTSEEE
T ss_pred HHHHHHHHH--HcCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCcEEe
Confidence 356888888 468899999999999999999999999999999866
No 186
>2p4w_A Transcriptional regulatory protein ARSR family; archaea, PHR, heat shock, transcriptional regulation, winged DNA binding; 2.60A {Pyrococcus furiosus} SCOP: a.4.5.64
Probab=70.43 E-value=9.7 Score=31.74 Aligned_cols=47 Identities=17% Similarity=0.153 Sum_probs=39.9
Q ss_pred HHHHHHHhhccCCCcccHHHHHHhcCCCHHHHHHHHHHHHHcCcEEEeCC
Q psy6552 181 HSLVLQQVASKNEAHISVSVLNNELNWSTERAQHALDFMVQEGYAWIDTQ 230 (254)
Q Consensus 181 ~~~il~l~~~~~~g~vt~~~l~~~l~ws~~ra~~~L~~l~~~G~lwvD~q 230 (254)
...||.+.. .|..|+.+|++.+|.+..-...+|..|++.|++.+...
T Consensus 17 rl~IL~~L~---~~~~s~~eLa~~l~is~stvs~hLk~Le~~GLV~~~~~ 63 (202)
T 2p4w_A 17 RRRILFLLT---KRPYFVSELSRELGVGQKAVLEHLRILEEAGLIESRVE 63 (202)
T ss_dssp HHHHHHHHH---HSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEC
T ss_pred HHHHHHHHH---hCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCceEEEee
Confidence 345666665 36799999999999999999999999999999998654
No 187
>2hs5_A Putative transcriptional regulator GNTR; APC6050, rhodococcus SP. RH structural genomics, PSI-2, protein structure initiative; 2.20A {Rhodococcus SP} SCOP: a.4.5.6 a.78.1.1
Probab=70.38 E-value=5.2 Score=33.86 Aligned_cols=38 Identities=13% Similarity=0.211 Sum_probs=34.7
Q ss_pred CCcccHHHHHHhcCCCHHHHHHHHHHHHHcCcEEEeCC
Q psy6552 193 EAHISVSVLNNELNWSTERAQHALDFMVQEGYAWIDTQ 230 (254)
Q Consensus 193 ~g~vt~~~l~~~l~ws~~ra~~~L~~l~~~G~lwvD~q 230 (254)
+-.++..+|++.||.|..-.+++|..|+.+|++-+-..
T Consensus 49 G~~L~e~~La~~lgVSRtpVREAL~~L~~eGlv~~~~~ 86 (239)
T 2hs5_A 49 GARLSEPDICAALDVSRNTVREAFQILIEDRLVAHELN 86 (239)
T ss_dssp TCEECHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETT
T ss_pred cCEeCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEeCC
Confidence 44689999999999999999999999999999988754
No 188
>2p5k_A Arginine repressor; DNA-binding domain, winged helix-turn-helix (WHTH), DNA binding protein; 1.00A {Bacillus subtilis} SCOP: a.4.5.3 PDB: 2p5l_C*
Probab=70.25 E-value=11 Score=24.61 Aligned_cols=42 Identities=7% Similarity=0.052 Sum_probs=31.9
Q ss_pred HHHHHhhccCCCcccHHHHHHhc-----CCCHHHHHHHHHHHHHcCcEEEeC
Q psy6552 183 LVLQQVASKNEAHISVSVLNNEL-----NWSTERAQHALDFMVQEGYAWIDT 229 (254)
Q Consensus 183 ~il~l~~~~~~g~vt~~~l~~~l-----~ws~~ra~~~L~~l~~~G~lwvD~ 229 (254)
.++.+.. ..+++|+.+|++.+ ++|..=....|+ +.|++-+..
T Consensus 9 ~i~~ll~--~~~~~t~~el~~~l~~~~~~vs~~Tv~R~L~---~lg~v~~~~ 55 (64)
T 2p5k_A 9 KIREIIT--SNEIETQDELVDMLKQDGYKVTQATVSRDIK---ELHLVKVPT 55 (64)
T ss_dssp HHHHHHH--HSCCCSHHHHHHHHHHTTCCCCHHHHHHHHH---HHTCEEEEE
T ss_pred HHHHHHH--cCCCCCHHHHHHHHHHhCCCcCHHHHHHHHH---HcCCEEEec
Confidence 4456666 35799999999999 999988887777 568874443
No 189
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=70.05 E-value=31 Score=28.30 Aligned_cols=148 Identities=11% Similarity=0.050 Sum_probs=78.5
Q ss_pred cCHHHHHHHHHHHHHcCCC-cccCCCccccccccchhHHHHHHHHHHHhhhhhhhcCCceeHHHHHHHHHHhcCCCCCCC
Q psy6552 59 KDAQFRRHFQEMCASIGVD-PLASRKGFWSLLGMGDFYYELSVQIVEVCLATNYKNGGLILLDELRTRLVKSRGKSLQHQ 137 (254)
Q Consensus 59 ~dp~fr~~f~~mc~~lGVd-Pl~s~kg~w~~lg~gdfy~eLavqive~c~~~r~~nGGii~L~dl~~~~nr~Rg~~~~~~ 137 (254)
..|.++..+.+.+...+.+ ++. .++|-. +++++.-+ ... .-=+|+=---...+.+.-+.+...-
T Consensus 12 py~~l~~~~~~i~~e~~~~i~i~----------~~~l~~--~v~~a~~~-~~~--~dVIISRGgta~~lr~~~~iPVV~I 76 (196)
T 2q5c_A 12 QNENLLNLFPKLALEKNFIPITK----------TASLTR--ASKIAFGL-QDE--VDAIISRGATSDYIKKSVSIPSISI 76 (196)
T ss_dssp SCHHHHHHHHHHHHHHTCEEEEE----------ECCHHH--HHHHHHHH-TTT--CSEEEEEHHHHHHHHTTCSSCEEEE
T ss_pred ccHHHHHHHHHHHhhhCCceEEE----------ECCHHH--HHHHHHHh-cCC--CeEEEECChHHHHHHHhCCCCEEEE
Confidence 3456666666666666554 221 234322 44444443 211 1123333333344444333321112
Q ss_pred CCCHHHHHHHHHHhhhhCCCeEEEEeCC---c---------eEEEEccCCCCChhHHHHHHHhhcc---CCCcccHHHHH
Q psy6552 138 DITNEDLLAAAKKLKIFGNGFSIIPIGQ---G---------QYLVQSIPGELSLDHSLVLQQVASK---NEAHISVSVLN 202 (254)
Q Consensus 138 ~IS~~Di~rA~~~L~~Lg~g~~l~~~~s---g---------~~vv~s~p~els~D~~~il~l~~~~---~~g~vt~~~l~ 202 (254)
.+|.-||++|++..+..+..+-++.|++ + ..+.+-......+-...+.++.+.. --|...+-+++
T Consensus 77 ~~s~~Dil~al~~a~~~~~kIavvg~~~~~~~~~~~~~ll~~~i~~~~~~~~~e~~~~i~~l~~~G~~vvVG~~~~~~~A 156 (196)
T 2q5c_A 77 KVTRFDTMRAVYNAKRFGNELALIAYKHSIVDKHEIEAMLGVKIKEFLFSSEDEITTLISKVKTENIKIVVSGKTVTDEA 156 (196)
T ss_dssp CCCHHHHHHHHHHHGGGCSEEEEEEESSCSSCHHHHHHHHTCEEEEEEECSGGGHHHHHHHHHHTTCCEEEECHHHHHHH
T ss_pred cCCHhHHHHHHHHHHhhCCcEEEEeCcchhhHHHHHHHHhCCceEEEEeCCHHHHHHHHHHHHHCCCeEEECCHHHHHHH
Confidence 6999999999999999999999999873 1 1111111111121233444444421 02567788899
Q ss_pred HhcCCC-------HHHHHHHHHHHHH
Q psy6552 203 NELNWS-------TERAQHALDFMVQ 221 (254)
Q Consensus 203 ~~l~ws-------~~ra~~~L~~l~~ 221 (254)
+++|.+ .+=.+.+|+++.+
T Consensus 157 ~~~Gl~~vli~sg~eSI~~Ai~eA~~ 182 (196)
T 2q5c_A 157 IKQGLYGETINSGEESLRRAIEEALN 182 (196)
T ss_dssp HHTTCEEEECCCCHHHHHHHHHHHHH
T ss_pred HHcCCcEEEEecCHHHHHHHHHHHHH
Confidence 999885 6666667766543
No 190
>2w48_A Sorbitol operon regulator; SORC, activator, repressor, DNA-binding, transcription, transcription regulator, transcription regulation; 3.20A {Klebsiella pneumoniae}
Probab=69.28 E-value=6.7 Score=34.60 Aligned_cols=38 Identities=16% Similarity=0.149 Sum_probs=33.9
Q ss_pred CCcccHHHHHHhcCCCHHHHHHHHHHHHHcCcEEEeCC
Q psy6552 193 EAHISVSVLNNELNWSTERAQHALDFMVQEGYAWIDTQ 230 (254)
Q Consensus 193 ~g~vt~~~l~~~l~ws~~ra~~~L~~l~~~G~lwvD~q 230 (254)
.+.+|..+|++.||.|..-.+.-|..|.++|++-|-..
T Consensus 19 ~~~~~~~ela~~l~vS~~tIrRdL~~l~~~G~v~iri~ 56 (315)
T 2w48_A 19 EQDMTQAQIARELGIYRTTISRLLKRGREQGIVTIAIN 56 (315)
T ss_dssp TSCCCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEEC
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEEec
Confidence 46799999999999999999999999999999964433
No 191
>2ovk_C Myosin catalytic light chain LC-1, mantle muscle, myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, contractIle protein; 2.60A {Todarodes pacificus} PDB: 2ekv_C 2ekw_C 2oy6_C* 3i5f_C* 3i5g_C 3i5h_C 3i5i_C
Probab=68.79 E-value=25 Score=26.29 Aligned_cols=42 Identities=17% Similarity=0.227 Sum_probs=21.1
Q ss_pred cCCceeHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHhhhhCCC
Q psy6552 113 NGGLILLDELRTRLVKSRGKSLQHQDITNEDLLAAAKKLKIFGNG 157 (254)
Q Consensus 113 nGGii~L~dl~~~~nr~Rg~~~~~~~IS~~Di~rA~~~L~~Lg~g 157 (254)
+.|.|+..|....+.+..... ..-..+++..|.+.+..=|.|
T Consensus 59 ~~g~i~~~eF~~~~~~~~~~~---~~~~~~~l~~~F~~~D~d~~G 100 (159)
T 2ovk_C 59 GEKAYKLEEILPIYEEMSSKD---TGTAADEFMEAFKTFDREGQG 100 (159)
T ss_dssp TSCEEEHHHHHHHHHHHTTCS---TTCCHHHHHHHHHHTCTTSSS
T ss_pred CCCeEcHHHHHHHHHHHhhcc---CCCcHHHHHHHHHHHCCCCCC
Confidence 447777777766664432211 233455555555555443433
No 192
>1v4r_A Transcriptional repressor; helix-turn-helix, winged-helix, gene regulation; NMR {Streptomyces} SCOP: a.4.5.6
Probab=68.54 E-value=1.7 Score=31.89 Aligned_cols=37 Identities=16% Similarity=0.222 Sum_probs=33.0
Q ss_pred CCcc-cHHHHHHhcCCCHHHHHHHHHHHHHcCcEEEeC
Q psy6552 193 EAHI-SVSVLNNELNWSTERAQHALDFMVQEGYAWIDT 229 (254)
Q Consensus 193 ~g~v-t~~~l~~~l~ws~~ra~~~L~~l~~~G~lwvD~ 229 (254)
+..+ |..+|++.+|.|..-+.++|..|+++|++-.-.
T Consensus 32 g~~lps~~eLa~~~~vSr~tvr~al~~L~~~Gli~~~~ 69 (102)
T 1v4r_A 32 GDTLPSVADIRAQFGVAAKTVSRALAVLKSEGLVSSRG 69 (102)
T ss_dssp TSBCCCHHHHHHHSSSCTTHHHHHTTTTTTSSCCEEET
T ss_pred cCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEeC
Confidence 3455 999999999999999999999999999997654
No 193
>3f8m_A GNTR-family protein transcriptional regulator; PHNF, HUTC, winged helix-TUR UTRA, DNA-binding, transcription regulation; 1.80A {Mycobacterium smegmatis}
Probab=67.59 E-value=6.1 Score=33.80 Aligned_cols=35 Identities=11% Similarity=0.137 Sum_probs=32.8
Q ss_pred CCcc-cHHHHHHhcCCCHHHHHHHHHHHHHcCcEEE
Q psy6552 193 EAHI-SVSVLNNELNWSTERAQHALDFMVQEGYAWI 227 (254)
Q Consensus 193 ~g~v-t~~~l~~~l~ws~~ra~~~L~~l~~~G~lwv 227 (254)
+..+ |..+|++.+|.|..-++++|..|+++|++-+
T Consensus 33 g~~lPse~~La~~~~vSr~tvr~Al~~L~~~G~i~~ 68 (248)
T 3f8m_A 33 GDPFPAEREIAEQFEVARETVRQALRELLIDGRVER 68 (248)
T ss_dssp TCBCCCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEE
T ss_pred CCcCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEe
Confidence 4457 9999999999999999999999999999999
No 194
>3skq_A Mitochondrial distribution and morphology protein; 14-3-3-like membrane protein, mitochondrial ribosome, respir chain biogenesis; 2.10A {Saccharomyces cerevisiae}
Probab=67.49 E-value=48 Score=28.82 Aligned_cols=80 Identities=18% Similarity=0.284 Sum_probs=58.4
Q ss_pred HHHHHHHHHHcCCCcccCCCccccccccchhHHHHHHHHHHHhhhhhh--hcC-CceeHHHHHHHHHHhcCCCCCCCCCC
Q psy6552 64 RRHFQEMCASIGVDPLASRKGFWSLLGMGDFYYELSVQIVEVCLATNY--KNG-GLILLDELRTRLVKSRGKSLQHQDIT 140 (254)
Q Consensus 64 r~~f~~mc~~lGVdPl~s~kg~w~~lg~gdfy~eLavqive~c~~~r~--~nG-Gii~L~dl~~~~nr~Rg~~~~~~~IS 140 (254)
|.+...||.-+|+.|..+. .---+.|-.++.++-..-+. ..| +-++..||. .-.+.||... .-+|
T Consensus 100 r~qLvaLck~m~L~p~gt~---------~~LR~rLr~rl~~I~~DDr~I~~EGV~sLs~~ELr-~AC~~RGm~~--~gls 167 (249)
T 3skq_A 100 RPQLAAMSKFMSLRPFGND---------NMLRYQIRSKLKDIMNDDKTIDYEGVESLSQEELY-QACVSRGMKA--YGVS 167 (249)
T ss_dssp HHHHHHHHHHTTCCCCSSH---------HHHHHHHHHHHHHHHHHHHHHHHHCGGGSCHHHHH-HHHHHTTCCC--TTCC
T ss_pred HHHHHHHHHHhCCCCCCCh---------HHHHHHHHHHHHHHHHhhHHHHHhCcccCCHHHHH-HHHHHcCCCC--CCCC
Confidence 7899999999999987531 12235677788877776553 344 237778887 4466788865 5699
Q ss_pred HHHHHHHHHHhhhhC
Q psy6552 141 NEDLLAAAKKLKIFG 155 (254)
Q Consensus 141 ~~Di~rA~~~L~~Lg 155 (254)
++++..-.+.|=.|.
T Consensus 168 ~e~LR~~L~~WL~Ls 182 (249)
T 3skq_A 168 KEDLVDNLKVWLELR 182 (249)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999987764
No 195
>3lmm_A Uncharacterized protein; multi-domained alpha-beta protein, structural genomics, PSI- 2, protein structure initiative; 3.00A {Corynebacterium diphtheriae}
Probab=67.28 E-value=5.4 Score=38.81 Aligned_cols=48 Identities=21% Similarity=0.225 Sum_probs=40.3
Q ss_pred ChhHHHHHHHhhccCCCcccHHHHHHhcCCCHHHHHHHHHHHHH-----cCcEEE
Q psy6552 178 SLDHSLVLQQVASKNEAHISVSVLNNELNWSTERAQHALDFMVQ-----EGYAWI 227 (254)
Q Consensus 178 s~D~~~il~l~~~~~~g~vt~~~l~~~l~ws~~ra~~~L~~l~~-----~G~lwv 227 (254)
+.++..||.++. ..+.+|..+|++.+|.+...++..|..|.+ .|++-.
T Consensus 429 ~~~~~~iL~~l~--~~~~it~~~la~~l~~s~~~~~~~L~~L~~~~~~~~glie~ 481 (583)
T 3lmm_A 429 DYRIAIVLYLLF--QRPFITIDVVARGLQSGKEAARNALEAARQTTVAGAPLIIA 481 (583)
T ss_dssp CHHHHHHHHHHH--HSSSBCHHHHHHHHTSCHHHHHHHHHHHHTCEETTEESEEE
T ss_pred chhHHHHHHHHH--HCCCcCHHHHHHHhCcCHHHHHHHHHHHHhhhccccceEEE
Confidence 444567888877 358999999999999999999999999999 667665
No 196
>1r9d_A Glycerol dehydratase; radical SAM, lyase; 1.80A {Clostridium butyricum} SCOP: c.7.1.1 PDB: 1r8w_A 1r9e_A
Probab=67.27 E-value=88 Score=31.54 Aligned_cols=130 Identities=14% Similarity=0.103 Sum_probs=71.0
Q ss_pred hhhHHHhccHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhh------hhcCHHHHHHHHHHHHHcCCCc
Q psy6552 5 AGVGAIQKQKLEQEKYKDKGTSIQENQLEQLSQHLNTFRDKLESFASEYKNE------IKKDAQFRRHFQEMCASIGVDP 78 (254)
Q Consensus 5 vGi~~i~~~~~~~~~~~~~g~~l~~~~~~~L~~ql~~fk~~L~~FA~kh~~~------I~~dp~fr~~f~~mc~~lGVdP 78 (254)
-|+.||....+++.+..+.+..=..+...-+++.+-.. +.+..||..|.+. -..||.-+.++.+|....+-+|
T Consensus 175 ~G~~~li~~~~~~~~~~~~~~~~~~~k~~fy~A~~i~~-eavi~~a~Rya~la~elA~~e~d~~rk~EL~~iA~~~~~vp 253 (787)
T 1r9d_A 175 VGFNGIINEAKEQLEKNRSIDPDFIKKEKFLNSVIISC-EAAITYVNRYAKKAKEIADNTSDAKRKAELNEIAKICSKVS 253 (787)
T ss_dssp HHHHHHHHHHHHHHHHTCCSCTHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHhcCCCCccchhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHhcccc
Confidence 58888877654433322211100111233344444433 4455678877432 2368898899999999999999
Q ss_pred ccCCCccccccccchhHHHHHHHHHHHhhhhhhhcCCceeH---HHHHHH-HHHhcCCCCCCCCCCHHHHHHHHHHh
Q psy6552 79 LASRKGFWSLLGMGDFYYELSVQIVEVCLATNYKNGGLILL---DELRTR-LVKSRGKSLQHQDITNEDLLAAAKKL 151 (254)
Q Consensus 79 l~s~kg~w~~lg~gdfy~eLavqive~c~~~r~~nGGii~L---~dl~~~-~nr~Rg~~~~~~~IS~~Di~rA~~~L 151 (254)
.-..++||-.+- .-|+..|+++ .+.||.-|++ +.++.- |.|- . + ||+++...-++.|
T Consensus 254 ~~pa~tf~EAlQ-~~~f~~l~~~--------~E~ng~~~S~GR~Dq~L~Pyy~~D--l----~-lt~eeA~Eli~~f 314 (787)
T 1r9d_A 254 GEGAKSFYEACQ-LFWFIHAIIN--------IESNGHSISPARFDQYMYPYYEND--K----N-ITDKFAQELIDCI 314 (787)
T ss_dssp TSCCCSHHHHHH-HHHHHHHHHH--------HHCCCSCBCCBSHHHHHHHHHHHC--S----S-CCHHHHHHHHHHH
T ss_pred cCCCCCHHHHHH-HHHHHHHHhh--------hccCCCcccCccHHHHHHHHHhcc--c----c-CCHHHHHHHHHHH
Confidence 887665652110 1233333322 2347755654 444444 4442 1 2 8888777766655
No 197
>3ihu_A Transcriptional regulator, GNTR family; YP_298823.1, DNA binding protein, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.92A {Ralstonia eutropha}
Probab=67.17 E-value=6.8 Score=32.46 Aligned_cols=38 Identities=13% Similarity=0.165 Sum_probs=34.5
Q ss_pred CCcccHHHHHHhcCCCHHHHHHHHHHHHHcCcEEEeCC
Q psy6552 193 EAHISVSVLNNELNWSTERAQHALDFMVQEGYAWIDTQ 230 (254)
Q Consensus 193 ~g~vt~~~l~~~l~ws~~ra~~~L~~l~~~G~lwvD~q 230 (254)
+..++..+|++.||.|..-.+++|..|+.+|++-+-..
T Consensus 37 G~~L~E~~La~~lgVSRtpVREAl~~L~~eGlv~~~~~ 74 (222)
T 3ihu_A 37 GQRLVETDLVAHFGVGRNSVREALQRLAAEGIVDLQRH 74 (222)
T ss_dssp TCEECHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECST
T ss_pred CCccCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEecC
Confidence 45788999999999999999999999999999988644
No 198
>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*
Probab=67.16 E-value=8 Score=34.53 Aligned_cols=38 Identities=16% Similarity=0.184 Sum_probs=35.1
Q ss_pred CCcccHHHHHHhcCCCHHHHHHHHHHHHHcCcEEEeCC
Q psy6552 193 EAHISVSVLNNELNWSTERAQHALDFMVQEGYAWIDTQ 230 (254)
Q Consensus 193 ~g~vt~~~l~~~l~ws~~ra~~~L~~l~~~G~lwvD~q 230 (254)
.|.+|+.+|++.+|.++......|+.|...|++-+++.
T Consensus 41 ~~p~t~~eLA~~~g~~~~~l~rlLr~L~~~gll~~~~~ 78 (353)
T 4a6d_A 41 PGPLDVAAVAAGVRASAHGTELLLDICVSLKLLKVETR 78 (353)
T ss_dssp SSCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred CCCCCHHHHHHhhCcCHHHHHHHHHHHHHCCCEEEecc
Confidence 57899999999999999999999999999999988765
No 199
>2dg5_A Gamma-glutamyltranspeptidase; gamma-glutamyltransferase, GGT, gamma-GT, glutathione; HET: GLU; 1.60A {Escherichia coli K12} SCOP: d.153.1.6 PDB: 2dbu_A 2dbw_A* 2dbx_A* 2e0x_A 2e0y_A 2z8i_A* 2z8j_A* 2z8k_A*
Probab=67.04 E-value=2.9 Score=38.46 Aligned_cols=32 Identities=38% Similarity=0.606 Sum_probs=25.9
Q ss_pred ccchhHH-HHHHHHHHHhhhhhhhcCCceeHHHHHHH
Q psy6552 90 GMGDFYY-ELSVQIVEVCLATNYKNGGLILLDELRTR 125 (254)
Q Consensus 90 g~gdfy~-eLavqive~c~~~r~~nGGii~L~dl~~~ 125 (254)
|...||. ++|.+|++.+. .+||+||+.||-..
T Consensus 214 G~~~FY~G~iA~~iv~~~~----~~GG~lt~~DLa~y 246 (366)
T 2dg5_A 214 GPDEFYKGTIAEQIAQEMQ----KNGGLITKEDLAAY 246 (366)
T ss_dssp CTHHHHTSHHHHHHHHHHH----HTTCCCCHHHHHHC
T ss_pred CchhccCCHHHHHHHHHHH----HcCCCCCHHHHhhC
Confidence 4457886 79999998875 58999999998764
No 200
>4a0z_A Transcription factor FAPR; lipid homeostasis; HET: MLC; 1.90A {Staphylococcus aureus} PDB: 4a0y_A 4a0x_A* 4a12_A
Probab=66.66 E-value=5 Score=33.30 Aligned_cols=44 Identities=11% Similarity=0.104 Sum_probs=37.2
Q ss_pred HHHHHHHhhccCCCcccHHHHHHhcCCCHHHHHHHHHHHHHcCcEE
Q psy6552 181 HSLVLQQVASKNEAHISVSVLNNELNWSTERAQHALDFMVQEGYAW 226 (254)
Q Consensus 181 ~~~il~l~~~~~~g~vt~~~l~~~l~ws~~ra~~~L~~l~~~G~lw 226 (254)
|..|+++.. ..|++|+++|++.|+.|..=.+.=|.+|-..|+.-
T Consensus 14 ~~~i~~~l~--~~~~~~~~~la~~~~vs~~TiRrDl~eL~~~~l~~ 57 (190)
T 4a0z_A 14 REAIRQQID--SNPFITDHELSDLFQVSIQTIRLDRTYLNIPELRK 57 (190)
T ss_dssp HHHHHHHHH--HCTTCCHHHHHHHHTSCHHHHHHHHHHHTCCCHHH
T ss_pred HHHHHHHHH--HCCCEeHHHHHHHHCCCHHHHHHHHHHhcCcchhh
Confidence 678899998 46999999999999999999888888876666543
No 201
>2obh_A Centrin-2; DNA repair complex EF hand superfamily protein-peptide compl cycle; 1.80A {Homo sapiens} SCOP: a.39.1.5 PDB: 3kf9_A 1m39_A 2a4j_A 2k2i_A 1oqp_A
Probab=66.59 E-value=21 Score=26.53 Aligned_cols=13 Identities=15% Similarity=0.531 Sum_probs=8.6
Q ss_pred HHHHHHHHcCCCc
Q psy6552 66 HFQEMCASIGVDP 78 (254)
Q Consensus 66 ~f~~mc~~lGVdP 78 (254)
+|..++.++|.+|
T Consensus 27 el~~~l~~~g~~~ 39 (143)
T 2obh_A 27 ELKVAMRALGFEP 39 (143)
T ss_dssp GHHHHHHHTTCCC
T ss_pred HHHHHHHHcCCCC
Confidence 4566677777765
No 202
>1fx7_A Iron-dependent repressor IDER; DTXR, iron-dependent regulator, signaling protein; 2.00A {Mycobacterium tuberculosis} SCOP: a.4.5.24 a.76.1.1 b.34.1.2 PDB: 1u8r_A
Probab=65.71 E-value=5.1 Score=33.66 Aligned_cols=36 Identities=11% Similarity=0.209 Sum_probs=32.3
Q ss_pred cccH--HHHHHhcCCCHHHHHHHHHHHHHcCcEEEeCC
Q psy6552 195 HISV--SVLNNELNWSTERAQHALDFMVQEGYAWIDTQ 230 (254)
Q Consensus 195 ~vt~--~~l~~~l~ws~~ra~~~L~~l~~~G~lwvD~q 230 (254)
++|+ .+|++.+++++.-....|..|++.|++-+...
T Consensus 22 ~~~~~~~~La~~l~vs~~tvs~~l~~Le~~GlV~r~~~ 59 (230)
T 1fx7_A 22 GVTPLRARIAERLDQSGPTVSQTVSRMERDGLLRVAGD 59 (230)
T ss_dssp TSCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECTT
T ss_pred CCCCcHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEeCC
Confidence 3655 99999999999999999999999999998653
No 203
>3bwg_A Uncharacterized HTH-type transcriptional regulato; APC85486, YYDK, transcriptional regulator, structural genomi 2; 2.09A {Bacillus subtilis subsp} SCOP: a.4.5.6 d.190.1.2
Probab=65.71 E-value=8.7 Score=32.50 Aligned_cols=38 Identities=13% Similarity=0.219 Sum_probs=33.9
Q ss_pred CCcc-cHHHHHHhcCCCHHHHHHHHHHHHHcCcEEEeCC
Q psy6552 193 EAHI-SVSVLNNELNWSTERAQHALDFMVQEGYAWIDTQ 230 (254)
Q Consensus 193 ~g~v-t~~~l~~~l~ws~~ra~~~L~~l~~~G~lwvD~q 230 (254)
+..+ |..+|++.+|.|..-++++|..|+++|++-+-..
T Consensus 26 g~~lPse~~La~~~~vSr~tvr~Al~~L~~~g~i~~~~g 64 (239)
T 3bwg_A 26 GDKLPVLETLMAQFEVSKSTITKSLELLEQKGAIFQVRG 64 (239)
T ss_dssp TCBCCCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEETT
T ss_pred CCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCcEEEeCC
Confidence 3457 9999999999999999999999999999987643
No 204
>1wi9_A Protein C20ORF116 homolog; helix-turn-helix motif, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.4.5.47
Probab=65.47 E-value=6.8 Score=27.85 Aligned_cols=44 Identities=16% Similarity=0.239 Sum_probs=37.7
Q ss_pred HHHhhccCCCcccHHHHHHhcCCCHHHHHHHHHHHHHcCcE--EEeCC
Q psy6552 185 LQQVASKNEAHISVSVLNNELNWSTERAQHALDFMVQEGYA--WIDTQ 230 (254)
Q Consensus 185 l~l~~~~~~g~vt~~~l~~~l~ws~~ra~~~L~~l~~~G~l--wvD~q 230 (254)
++.+. ...-+..++|+.+||.+..-|.+.|+.|+++|.+ .+|+.
T Consensus 13 i~yIk--~~Kvv~LedLA~~F~l~t~~~i~RI~~Le~~g~ltGViDDR 58 (72)
T 1wi9_A 13 INYIK--KSKVVLLEDLAFQMGLRTQDAINRIQDLLTEGTLTGVIDDR 58 (72)
T ss_dssp HHHHH--HCSEECHHHHHHHHCSCHHHHHHHHHHHHHHSSSCEEECTT
T ss_pred HHHHH--HcCeeeHHHHHHHhCCChHHHHHHHHHHHHCCCeEEEEeCC
Confidence 45555 3468999999999999999999999999999987 67875
No 205
>3tl4_X Glutaminyl-tRNA synthetase; glutamine, appended domain, hinge, tRNA LIG amidotransferase, ligase; 2.30A {Saccharomyces cerevisiae}
Probab=65.22 E-value=13 Score=30.90 Aligned_cols=48 Identities=13% Similarity=0.144 Sum_probs=34.0
Q ss_pred HHHHhhhhhhcCHHHHHHHHHHHHHcCCC-cccCCCccccccccchhHHHHHHHHHH
Q psy6552 49 FASEYKNEIKKDAQFRRHFQEMCASIGVD-PLASRKGFWSLLGMGDFYYELSVQIVE 104 (254)
Q Consensus 49 FA~kh~~~I~~dp~fr~~f~~mc~~lGVd-Pl~s~kg~w~~lg~gdfy~eLavqive 104 (254)
|..+-..++-+||.+...+......-|++ +...+ .|..-|.||.++-.
T Consensus 16 L~e~kaket~kN~kls~~L~~~i~ea~~~~~~dk~--------~g~LLy~latk~k~ 64 (187)
T 3tl4_X 16 FEDKKVKEIVKNKKVSDSLYKLIKETPSDYQWNKS--------TRALVHNLASFVKG 64 (187)
T ss_dssp CCHHHHHHHTTSHHHHHHHHHHHHTSCTTCCCCHH--------HHHHHHHHHHHHTT
T ss_pred CChhHHHHHHhCHHHHHHHHHHHHHccccCCCCHH--------HHHHHHHHHHhccC
Confidence 34455678889999999999998888875 44321 36777888876643
No 206
>2dk8_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, RNA_POL_RPC34 domain, RNA polymerase III C39 subunit, NPPSFA; NMR {Mus musculus} SCOP: a.4.5.85
Probab=64.48 E-value=25 Score=25.31 Aligned_cols=55 Identities=13% Similarity=0.181 Sum_probs=45.1
Q ss_pred HHHHHHHhhccCCCcccHHHHHHhcCC-CHHHHHHHHHHHHHcCcEEEeCCCCCcccce
Q psy6552 181 HSLVLQQVASKNEAHISVSVLNNELNW-STERAQHALDFMVQEGYAWIDTQSPQEHLYW 238 (254)
Q Consensus 181 ~~~il~l~~~~~~g~vt~~~l~~~l~w-s~~ra~~~L~~l~~~G~lwvD~q~~~e~~yw 238 (254)
+..||++|+.. -.+||-.+|...+.= ++.--..+|+.|+..|-+=+=.+ ++.++|
T Consensus 16 e~~IL~l~~~~-P~GItd~~L~~~~p~~~~~~r~~aIN~LL~~gkiel~K~--~~~liY 71 (81)
T 2dk8_A 16 ENRIIELCHQF-PHGITDQVIQNEMPHIEAQQRAVAINRLLSMGQLDLLRS--NTGLLY 71 (81)
T ss_dssp HHHHHHHHHHC-SSCEEHHHHHHHCTTSCHHHHHHHHHHHHHHTSEEEEEC--SSSEEE
T ss_pred HHHHHHHHHhC-CCCCCHHHHHHHCCCCCHHHHHHHHHHHHHcCCeEEEec--CCeEEE
Confidence 57899999976 568999999998865 99999999999999998877665 355555
No 207
>2gqq_A Leucine-responsive regulatory protein; helix-turn-helix, transcription; 3.20A {Escherichia coli} PDB: 2l4a_A
Probab=64.16 E-value=1.1 Score=35.68 Aligned_cols=48 Identities=15% Similarity=0.215 Sum_probs=39.7
Q ss_pred CChhHHHHHHHhhccCCCcccHHHHHHhcCCCHHHHHHHHHHHHHcCcEE
Q psy6552 177 LSLDHSLVLQQVASKNEAHISVSVLNNELNWSTERAQHALDFMVQEGYAW 226 (254)
Q Consensus 177 ls~D~~~il~l~~~~~~g~vt~~~l~~~l~ws~~ra~~~L~~l~~~G~lw 226 (254)
++.-...|+...+ .++.+|..+|++.+|.|..-+.++|..|+++|++.
T Consensus 11 ~d~l~~~Il~~l~--~~~~ls~~eLa~~lgvSr~~vr~al~~L~~~Gli~ 58 (163)
T 2gqq_A 11 LDRIDRNILNELQ--KDGRISNVELSKRVGLSPTPCLERVRRLERQGFIQ 58 (163)
T ss_dssp CCSHHHHHHHHHH--HCSSCCTTGGGTSSSCCTTTSSSTHHHHHHHTSEE
T ss_pred hhHHHHHHHHHHH--hCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCcEE
Confidence 3433456666555 46788999999999999999999999999999986
No 208
>3kdg_A DNA mismatch repair protein MUTL; endonuclease, DNA damage, DNA repair, hydrolase; HET: DNA; 2.00A {Bacillus subtilis} PDB: 3gab_A* 3kdk_A*
Probab=64.11 E-value=10 Score=31.29 Aligned_cols=88 Identities=16% Similarity=0.273 Sum_probs=56.0
Q ss_pred CCCHHHHHHHHHHhhhh-CCCeEEEEeCCceEEEEccCCCCChh--HHHH---HHHhhccCCCcccHHHHH---------
Q psy6552 138 DITNEDLLAAAKKLKIF-GNGFSIIPIGQGQYLVQSIPGELSLD--HSLV---LQQVASKNEAHISVSVLN--------- 202 (254)
Q Consensus 138 ~IS~~Di~rA~~~L~~L-g~g~~l~~~~sg~~vv~s~p~els~D--~~~i---l~l~~~~~~g~vt~~~l~--------- 202 (254)
.+|+.|....-+..+.| ..||.+..+|.+...|+++|..+... ...+ ++.... .+..+...+.
T Consensus 66 ~ls~~e~~~l~~~~~~l~~~Gf~~e~~g~~~~~v~~vP~~l~~~~~~~~l~ell~~l~~--~~~~~~~~~~~~~~~~~AC 143 (197)
T 3kdg_A 66 HYSTNEALIIEQHKQELESVGVFLESFGSNSYIVRCHPAWFPKGEEAELIEEIIQQVLD--SKNIDIKKLREEAAIMMSC 143 (197)
T ss_dssp ECCTTHHHHHHHTHHHHHHTTCCCEECSTTEEEEEEEETTSCTTCHHHHHHHHHHHHHH--HSSCCHHHHHHHHHHHHHH
T ss_pred ecCHHHHHHHHHHHHHHHhCCCEEEECCCCEEEEEecCcccccccHHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHhh
Confidence 47888887776666666 46788888987788999999766532 2233 333332 1233333321
Q ss_pred -----HhcCCCHHHHHHHHHHHHHcCcEEE
Q psy6552 203 -----NELNWSTERAQHALDFMVQEGYAWI 227 (254)
Q Consensus 203 -----~~l~ws~~ra~~~L~~l~~~G~lwv 227 (254)
..-.|+..-+...|++|.+...-|-
T Consensus 144 r~AIk~g~~Ls~~Em~~Ll~~L~~~~~p~~ 173 (197)
T 3kdg_A 144 KGSIKANRHLRNDEIKALLDDLRSTSDPFT 173 (197)
T ss_dssp CC----CCCCCHHHHHHHHHHHHHSSCTTB
T ss_pred HhhccCCCCCCHHHHHHHHHHHHcCCCCCc
Confidence 1236899999999999887755443
No 209
>3k69_A Putative transcription regulator; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.95A {Lactobacillus plantarum} SCOP: a.4.5.0
Probab=63.93 E-value=5 Score=32.31 Aligned_cols=41 Identities=17% Similarity=0.249 Sum_probs=34.6
Q ss_pred HHHhhccCCCcccHHHHHHhcCCCHHHHHHHHHHHHHcCcEE
Q psy6552 185 LQQVASKNEAHISVSVLNNELNWSTERAQHALDFMVQEGYAW 226 (254)
Q Consensus 185 l~l~~~~~~g~vt~~~l~~~l~ws~~ra~~~L~~l~~~G~lw 226 (254)
+.++.. ..+.+|..+|++.+++++.-.+..|..|.+.|++-
T Consensus 19 ~~La~~-~~~~~s~~~IA~~~~is~~~l~kil~~L~~aGlv~ 59 (162)
T 3k69_A 19 LYLDAH-RDSKVASRELAQSLHLNPVMIRNILSVLHKHGYLT 59 (162)
T ss_dssp HHHHTT-TTSCBCHHHHHHHHTSCGGGTHHHHHHHHHTTSSE
T ss_pred HHHHhC-CCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEE
Confidence 344543 25689999999999999999999999999999963
No 210
>2yfw_B Histone H4, H4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.60A {Kluyveromyces lactis nrrl y-1140}
Probab=63.89 E-value=17 Score=27.07 Aligned_cols=61 Identities=20% Similarity=0.203 Sum_probs=36.9
Q ss_pred HHHHHHHHcCCCcccCCCccccccccchhHHHHHHHHHHHhhhhhhhcCCceeHHHHHHHHHHhcCCCCCCCCCCHHHHH
Q psy6552 66 HFQEMCASIGVDPLASRKGFWSLLGMGDFYYELSVQIVEVCLATNYKNGGLILLDELRTRLVKSRGKSLQHQDITNEDLL 145 (254)
Q Consensus 66 ~f~~mc~~lGVdPl~s~kg~w~~lg~gdfy~eLavqive~c~~~r~~nGGii~L~dl~~~~nr~Rg~~~~~~~IS~~Di~ 145 (254)
....++.+.|+.-+. .+-|.+|+.-+-+++.. ++....-|+.-+++ ..|+++||.
T Consensus 34 ~I~Rlar~~G~~rIs-----------~~a~~~l~~vle~~~~~-------V~~dA~~~a~hakR-------ktvt~~DV~ 88 (103)
T 2yfw_B 34 AIRRLARRGGVKRIS-----------GLIYEEVRNVLKTFLES-------VIRDAVTYTEHAKR-------KTVTSLDVV 88 (103)
T ss_dssp HHHHHHHHTTCCEEC-----------TTHHHHHHHHHHHHHHH-------HHHHHHHHHHHTTC-------SEECHHHHH
T ss_pred HHHHHHHHcCccccC-----------HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHcCC-------CcCcHHHHH
Confidence 556778888885443 36666665444444443 22223333333332 479999999
Q ss_pred HHHHHh
Q psy6552 146 AAAKKL 151 (254)
Q Consensus 146 rA~~~L 151 (254)
-|++.+
T Consensus 89 ~Alr~~ 94 (103)
T 2yfw_B 89 YALKRQ 94 (103)
T ss_dssp HHHHHH
T ss_pred HHHHHc
Confidence 999986
No 211
>2v36_A Gamma-glutamyltranspeptidase large chain; transferase, glutathione biosynthesis, gamma-glutamyl transferase, acyltransferase, zymogen; 1.85A {Bacillus subtilis} PDB: 3a75_A*
Probab=63.87 E-value=3.4 Score=38.11 Aligned_cols=32 Identities=19% Similarity=0.389 Sum_probs=25.5
Q ss_pred ccchhHH-HHHHHHHHHhhhhhhhcCCceeHHHHHHH
Q psy6552 90 GMGDFYY-ELSVQIVEVCLATNYKNGGLILLDELRTR 125 (254)
Q Consensus 90 g~gdfy~-eLavqive~c~~~r~~nGGii~L~dl~~~ 125 (254)
|...||. ++|.+|++.+. .+||+||+.||-..
T Consensus 210 G~~~FY~G~iA~~iv~~~~----~~GG~lt~~DLa~y 242 (376)
T 2v36_A 210 GTDAFYKGKFAKTLSDTVQ----DFGGSMTEKDLENY 242 (376)
T ss_dssp CTHHHHSHHHHHHHHHHHH----HTTCCCCHHHHHHC
T ss_pred CcccccCCHHHHHHHHHHH----HcCCCCCHHHHhhC
Confidence 4457886 69999988875 57999999999764
No 212
>3edp_A LIN2111 protein; APC88337, listeria innocua CLIP11262, structural GE PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 2.09A {Listeria innocua}
Probab=63.34 E-value=10 Score=32.13 Aligned_cols=38 Identities=18% Similarity=0.241 Sum_probs=32.6
Q ss_pred CCcc-cHHHHHHhcCCCHHHHHHHHHHHHHcCcEEEeCC
Q psy6552 193 EAHI-SVSVLNNELNWSTERAQHALDFMVQEGYAWIDTQ 230 (254)
Q Consensus 193 ~g~v-t~~~l~~~l~ws~~ra~~~L~~l~~~G~lwvD~q 230 (254)
+..+ |..+|++.+|.|..-++++|..|+++|++-+-..
T Consensus 30 g~~lPse~~La~~~~vSr~tvr~Al~~L~~~G~i~~~~g 68 (236)
T 3edp_A 30 GMLMPNETALQEIYSSSRTTIRRAVDLLVEEGLVVRKNG 68 (236)
T ss_dssp CC--CCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEETT
T ss_pred cCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEECC
Confidence 3457 9999999999999999999999999999887654
No 213
>2qmc_A GGT, gamma-glutamyltranspeptidase; NTN-hydrolase, transferase; HET: GTB; 1.55A {Helicobacter pylori} PDB: 2qm6_A* 3fnm_A* 2nqo_A
Probab=63.16 E-value=3.6 Score=38.06 Aligned_cols=32 Identities=31% Similarity=0.507 Sum_probs=25.1
Q ss_pred ccchhHH-HHHHHHHHHhhhhhhhcCCceeHHHHHHH
Q psy6552 90 GMGDFYY-ELSVQIVEVCLATNYKNGGLILLDELRTR 125 (254)
Q Consensus 90 g~gdfy~-eLavqive~c~~~r~~nGGii~L~dl~~~ 125 (254)
|...||. ++|.+|++.+. .+||+||+.||-..
T Consensus 225 G~~~FY~G~iA~~iv~~~~----~~GG~lt~~DLa~y 257 (377)
T 2qmc_A 225 GAKGFYQGQVAELIEKDMK----KNGGIITKEDLASY 257 (377)
T ss_dssp TTHHHHSHHHHHHHHHHHH----HTTCCCCHHHHHTC
T ss_pred CcHhhhCCHHHHHHHHHHH----HcCCCCCHHHHhhC
Confidence 4457885 79999988775 57999999999643
No 214
>2l01_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Bacteroides vulgatus}
Probab=62.80 E-value=21 Score=25.58 Aligned_cols=56 Identities=5% Similarity=0.097 Sum_probs=47.1
Q ss_pred HHHHhhccCCCcccHHHHHHhcCC-CHHHHHHHHHHHHHcCcEEEeCCCCCcccceecccc
Q psy6552 184 VLQQVASKNEAHISVSVLNNELNW-STERAQHALDFMVQEGYAWIDTQSPQEHLYWFPSLF 243 (254)
Q Consensus 184 il~l~~~~~~g~vt~~~l~~~l~w-s~~ra~~~L~~l~~~G~lwvD~q~~~e~~yw~p~lf 243 (254)
|-.+.. +.+..|..+|++..|. +..-..-+|-.|.+++.+.++.. .+..|.+.++=
T Consensus 15 VW~~L~--~~~~~s~~el~k~t~l~~d~el~lAiGWLaREdKI~~~~~--~~~l~v~l~~~ 71 (77)
T 2l01_A 15 IWEALN--GTEGLTQKQIKKATKLKADKDFFLGLGWLLREDKVVTSEV--EGEIFVKLVLE 71 (77)
T ss_dssp HHHHHT--TSSCEEHHHHHHHHTCSCHHHHHHHHHHHHHTTCEEEEEE--TTEEEEEECSS
T ss_pred HHHHHh--cCCCCCHHHHHHHHCCCCHHHHHHHHHHHhhcCceEEEee--CCEEEEEeecc
Confidence 344555 3578999999999999 99999999999999999999998 56788776653
No 215
>2di3_A Bacterial regulatory proteins, GNTR family; helix-turn-helix, transcription; 2.05A {Corynebacterium glutamicum}
Probab=62.34 E-value=7.7 Score=32.49 Aligned_cols=35 Identities=23% Similarity=0.213 Sum_probs=31.5
Q ss_pred CCcc-cHHHHHHhcCCCHHHHHHHHHHHHHcCcEEE
Q psy6552 193 EAHI-SVSVLNNELNWSTERAQHALDFMVQEGYAWI 227 (254)
Q Consensus 193 ~g~v-t~~~l~~~l~ws~~ra~~~L~~l~~~G~lwv 227 (254)
+..+ +..+|++.||.|..-.+++|..|+.+|++-+
T Consensus 25 G~~LpsE~~La~~lgVSRtpVREAL~~L~~~GlV~~ 60 (239)
T 2di3_A 25 GDHLPSERALSETLGVSRSSLREALRVLEALGTIST 60 (239)
T ss_dssp TCBCCCHHHHHHHHTCCHHHHHHHHHHHHHHTSEEC
T ss_pred CCcCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCeEe
Confidence 3467 6789999999999999999999999999876
No 216
>3dpt_A ROCO, RAB family protein; alpha-beta-protein, signaling protein; 2.90A {Chlorobaculum tepidum}
Probab=62.33 E-value=11 Score=33.89 Aligned_cols=133 Identities=14% Similarity=0.115 Sum_probs=86.9
Q ss_pred HHHHHHHHHHHhhhhhhhcCCceeHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHhhhhCCCeEEEEeCC--ceEEEEc
Q psy6552 95 YYELSVQIVEVCLATNYKNGGLILLDELRTRLVKSRGKSLQHQDITNEDLLAAAKKLKIFGNGFSIIPIGQ--GQYLVQS 172 (254)
Q Consensus 95 y~eLavqive~c~~~r~~nGGii~L~dl~~~~nr~Rg~~~~~~~IS~~Di~rA~~~L~~Lg~g~~l~~~~s--g~~vv~s 172 (254)
|.+|...+.+.-. +--.|+..|+....... .+-+++|+..|+..|..+|.= +.|.. .+.+|-.
T Consensus 18 W~~l~~~L~~~~~-----~~~~is~~e~~~i~~~~-------gl~~~~~~~~~l~~LH~lG~i---l~f~d~~~~d~V~L 82 (332)
T 3dpt_A 18 WIKVKEKLVEATT-----AQRYLNRTEVEKICNDS-------GITDPGERKTLLGYLNNLGIV---LYFEALDLSEIYVL 82 (332)
T ss_dssp HHHHHHHHHHHHH-----HSSEECHHHHHHHHHHT-------TCCCHHHHHHHHHHHHHTTSS---EECTTTCCSTTCEE
T ss_pred HHHHHHHHHhhhc-----CCCeecHHHHHHHHHHc-------CCCCHHHHHHHHHHHHHCCEE---EEecCCcccCeEEE
Confidence 4456556655411 23589999999888764 344557899999999999953 34431 1223334
Q ss_pred cCCCCChhHHHHHHHhhccCCCcccHHHHHHhcC---C---------------CHHHHHHHHHHHHHcCcEEEeCCCCCc
Q psy6552 173 IPGELSLDHSLVLQQVASKNEAHISVSVLNNELN---W---------------STERAQHALDFMVQEGYAWIDTQSPQE 234 (254)
Q Consensus 173 ~p~els~D~~~il~l~~~~~~g~vt~~~l~~~l~---w---------------s~~ra~~~L~~l~~~G~lwvD~q~~~e 234 (254)
.|..+.+.-..++..... ..|.++.++|..-+. - +...-...|..|++-++++--+.
T Consensus 83 dP~Wl~~~v~~il~~~~~-~~G~l~~~~L~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~LMekfeLc~~~~~---- 157 (332)
T 3dpt_A 83 DPHWVTIGVYRIINSSKT-KNGHLNTSALGYILNEEQIRCDEYDPAKNNKFTYTLLEQRYLLDIMKQFELCYDEGK---- 157 (332)
T ss_dssp CHHHHHHHHHHHHHCGGG-TTSEEESTTHHHHHHTCCCC----------CCCCCHHHHHHHHHHHHHTTSCEECSS----
T ss_pred ChHHHHHHHHHHHHHhhh-cCceEEHHHHHHHhcccccccccccccccccccCchhhHHHHHHHHHHcCceEecCC----
Confidence 555565544555554443 379999999986553 1 34445556777888888877643
Q ss_pred ccceecccccCcc
Q psy6552 235 HLYWFPSLFTECM 247 (254)
Q Consensus 235 ~~yw~p~lf~~~~ 247 (254)
+.|.+|+++....
T Consensus 158 ~~yliP~lL~~~~ 170 (332)
T 3dpt_A 158 GLFIIPSNLPTQI 170 (332)
T ss_dssp SEEECGGGSCSCC
T ss_pred CeEEeeccCCCCC
Confidence 6799999988665
No 217
>1xd7_A YWNA; structural genomics, protein structure initiative, winged HE binding, hypothetical protein, PSI; 2.30A {Bacillus subtilis subsp} SCOP: a.4.5.55
Probab=61.67 E-value=14 Score=28.80 Aligned_cols=39 Identities=5% Similarity=0.057 Sum_probs=33.0
Q ss_pred HHHhhccCCCcccHHHHHHhcCCCHHHHHHHHHHHHHcCcEE
Q psy6552 185 LQQVASKNEAHISVSVLNNELNWSTERAQHALDFMVQEGYAW 226 (254)
Q Consensus 185 l~l~~~~~~g~vt~~~l~~~l~ws~~ra~~~L~~l~~~G~lw 226 (254)
+.+|... +. |..+|++.+++++...+..|..|.+.|++-
T Consensus 16 ~~La~~~--~~-s~~~IA~~~~i~~~~l~kIl~~L~~aGlv~ 54 (145)
T 1xd7_A 16 SLISMDE--KT-SSEIIADSVNTNPVVVRRMISLLKKADILT 54 (145)
T ss_dssp HHHHTCS--CC-CHHHHHHHHTSCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHhCC--CC-CHHHHHHHHCcCHHHHHHHHHHHHHCCceE
Confidence 4556532 34 999999999999999999999999999974
No 218
>2wv0_A YVOA, HTH-type transcriptional repressor YVOA; DNA-binding, transcription regulation, transcriptional regulator, GNTR/HUTC family; 2.40A {Bacillus subtilis}
Probab=61.43 E-value=8.7 Score=32.64 Aligned_cols=37 Identities=19% Similarity=0.226 Sum_probs=32.9
Q ss_pred CCcc-cHHHHHHhcCCCHHHHHHHHHHHHHcCcEEEeC
Q psy6552 193 EAHI-SVSVLNNELNWSTERAQHALDFMVQEGYAWIDT 229 (254)
Q Consensus 193 ~g~v-t~~~l~~~l~ws~~ra~~~L~~l~~~G~lwvD~ 229 (254)
+..+ |..+|++.+|.|..-++++|..|+++|++-+-.
T Consensus 31 g~~lPse~~La~~~~vSr~tvr~Al~~L~~~G~i~~~~ 68 (243)
T 2wv0_A 31 DMPLPSEREYAEQFGISRMTVRQALSNLVNEGLLYRLK 68 (243)
T ss_dssp TCBCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECT
T ss_pred cCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEeC
Confidence 3456 899999999999999999999999999987653
No 219
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=60.74 E-value=6.6 Score=33.69 Aligned_cols=44 Identities=18% Similarity=0.202 Sum_probs=38.4
Q ss_pred HHHHHHHhhccCCCcccHHHHHHhcCCCHHHHHHHHHHHHHcCcEEE
Q psy6552 181 HSLVLQQVASKNEAHISVSVLNNELNWSTERAQHALDFMVQEGYAWI 227 (254)
Q Consensus 181 ~~~il~l~~~~~~g~vt~~~l~~~l~ws~~ra~~~L~~l~~~G~lwv 227 (254)
...|+.+.. .|..|+.+|++.+|.+..-...+|..|++.|++..
T Consensus 14 R~~IL~~L~---~g~~s~~ELa~~lglS~stVs~hL~~Le~aGLV~~ 57 (232)
T 2qlz_A 14 RRDLLSHLT---CMECYFSLLSSKVSVSSTAVAKHLKIMEREGVLQS 57 (232)
T ss_dssp HHHHHHHHT---TTTTCSSSSCTTCCCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHH---hCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEE
Confidence 345677666 26799999999999999999999999999999988
No 220
>1z05_A Transcriptional regulator, ROK family; structural genomics, protein structure initiative, midwest center for structural genomics; 2.00A {Vibrio cholerae o1 biovar eltor} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=60.47 E-value=8.8 Score=35.19 Aligned_cols=46 Identities=13% Similarity=0.076 Sum_probs=40.4
Q ss_pred HHHHHHhhccCCCcccHHHHHHhcCCCHHHHHHHHHHHHHcCcEEEeC
Q psy6552 182 SLVLQQVASKNEAHISVSVLNNELNWSTERAQHALDFMVQEGYAWIDT 229 (254)
Q Consensus 182 ~~il~l~~~~~~g~vt~~~l~~~l~ws~~ra~~~L~~l~~~G~lwvD~ 229 (254)
..|+++... .|.+|..+|++.+|.|+.-....++.|+++|++---.
T Consensus 42 ~~il~~l~~--~~~~sr~ela~~~gls~~tv~~~v~~L~~~gli~~~~ 87 (429)
T 1z05_A 42 GRVYKLIDQ--KGPISRIDLSKESELAPASITKITRELIDAHLIHETT 87 (429)
T ss_dssp HHHHHHHHH--HCSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred HHHHHHHHH--cCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEecc
Confidence 467888874 4789999999999999999999999999999987654
No 221
>2f2o_A Calmodulin fused with calmodulin-binding domain of calcineurin; EF-hands, calcium, metal binding protein; 2.17A {Bos taurus} PDB: 2f2p_A
Probab=60.38 E-value=44 Score=25.32 Aligned_cols=15 Identities=20% Similarity=0.505 Sum_probs=10.1
Q ss_pred HHHHHHHHHcCCCcc
Q psy6552 65 RHFQEMCASIGVDPL 79 (254)
Q Consensus 65 ~~f~~mc~~lGVdPl 79 (254)
.+|..++..+|.+|-
T Consensus 31 ~e~~~~l~~~~~~~~ 45 (179)
T 2f2o_A 31 KELGTVMRSLGQNPT 45 (179)
T ss_dssp HHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHcCCCCC
Confidence 366777777887653
No 222
>3eqx_A FIC domain containing transcriptional regulator; FIC family protein, structural genomics, joint center for ST genomics, JCSG; HET: MSE PGE; 1.60A {Shewanella oneidensis}
Probab=60.33 E-value=8.2 Score=35.36 Aligned_cols=57 Identities=14% Similarity=0.088 Sum_probs=42.7
Q ss_pred HHHHHhhccCCCcccHHHHHHhcCCCHHHHHHHHHHHHHcCcEEEeCCCCCcccceeccc
Q psy6552 183 LVLQQVASKNEAHISVSVLNNELNWSTERAQHALDFMVQEGYAWIDTQSPQEHLYWFPSL 242 (254)
Q Consensus 183 ~il~l~~~~~~g~vt~~~l~~~l~ws~~ra~~~L~~l~~~G~lwvD~q~~~e~~yw~p~l 242 (254)
.++++.. ..+++|+..+++.+|.|..-|...|..|++.|++-.-... ....|=+|.+
T Consensus 301 ~ll~~l~--~~p~~t~~~~~~~~~~S~~TA~r~L~~L~e~GiL~~~~~g-R~~~y~~~~~ 357 (373)
T 3eqx_A 301 ELVQVIF--EQPYCRIQNLVESGLAKRQTASVYLKQLCDIGVLEEVQSG-KEKLFVHPKF 357 (373)
T ss_dssp HHHHHHH--HCSEEEHHHHHHTSSSCHHHHHHHHHHHHHTTSCEEC--C-CSCEEECHHH
T ss_pred HHHHHHH--HCCCccHHHHHHHhCcCHHHHHHHHHHHHHCCcEEEeCCC-CceEeehHHH
Confidence 4556665 3689999999999999999999999999999999765442 2334444443
No 223
>2nlz_A Cephalosporin acylase; structural genomics, protein structure initiative, PSI, nysgxrc; 2.70A {Bacillus halodurans} SCOP: d.153.1.6
Probab=60.32 E-value=5.2 Score=38.71 Aligned_cols=32 Identities=31% Similarity=0.406 Sum_probs=25.9
Q ss_pred ccchhHH-HHHHHHHHHhhhhhhhcCCceeHHHHHHH
Q psy6552 90 GMGDFYY-ELSVQIVEVCLATNYKNGGLILLDELRTR 125 (254)
Q Consensus 90 g~gdfy~-eLavqive~c~~~r~~nGGii~L~dl~~~ 125 (254)
|...||. +||.+|++.+. .+||+||++||-..
T Consensus 215 G~~~FY~G~iA~~iv~~~~----~~GG~lt~~DLa~y 247 (547)
T 2nlz_A 215 NGESFYRGELADQIHAFFD----KHGGYLTKEDLACY 247 (547)
T ss_dssp TTHHHHHSHHHHHHHHHHH----HTTCCCCHHHHHTC
T ss_pred CchhhcCCHHHHHHHHHHH----hcCCCCCHHHHhhC
Confidence 4457888 79999998886 57999999999654
No 224
>3a4c_A DNA replication factor CDT1; alpha-beta structure, cell cycle, DNA- binding, nucleus, phosphoprotein, proto-oncogene, UBL conjugation; HET: DNA; 1.89A {Mus musculus} PDB: 2rqq_A*
Probab=59.11 E-value=56 Score=24.75 Aligned_cols=67 Identities=12% Similarity=0.080 Sum_probs=51.5
Q ss_pred hcCCceeHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHhhhhCCC-eEEEEeCCceEEEEccCCCCChhHHHHHHH
Q psy6552 112 KNGGLILLDELRTRLVKSRGKSLQHQDITNEDLLAAAKKLKIFGNG-FSIIPIGQGQYLVQSIPGELSLDHSLVLQQ 187 (254)
Q Consensus 112 ~nGGii~L~dl~~~~nr~Rg~~~~~~~IS~~Di~rA~~~L~~Lg~g-~~l~~~~sg~~vv~s~p~els~D~~~il~l 187 (254)
+--|.+++..+++.+..... ..+|++++..=+++|..|=+. +.+.++. ...|+.-. -+.|.+.|++-
T Consensus 29 EkK~vl~~e~~~~ki~~Syr-----~~ls~~EmE~hl~lL~ellPdWls~~~vR-~~~ylKl~---k~~dl~~i~~r 96 (106)
T 3a4c_A 29 ERKPALTMEVVCARMVDSCQ-----TALSPGEMEKHLVLLAELLPDWLSLHRIR-TDTYVKLD---KAVDLAGLTAR 96 (106)
T ss_dssp CSSSEEEHHHHHHHHHHTSC-----CSCCHHHHHHHHHHHHHHCTTTEEEEEET-TEEEEEEC---TTSCHHHHHHH
T ss_pred cccCCccHHHHHHHHHhhhh-----ccCCHHHHHHHHHHHHHhCcchheeeeee-ccceeeee---hhhhHHHHHHH
Confidence 45789999999988876532 579999999999999888544 7888888 67788744 35577776543
No 225
>1lva_A Selenocysteine-specific elongation factor; winged-helix, translation; 2.12A {Moorella thermoacetica} SCOP: a.4.5.35 a.4.5.35 a.4.5.35 a.4.5.35 PDB: 2uwm_A 2ply_A 1wsu_A
Probab=58.86 E-value=84 Score=26.70 Aligned_cols=130 Identities=15% Similarity=0.190 Sum_probs=86.6
Q ss_pred chhHHHHHHHHHHHhhhhhhhc---CCceeHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHhhhhCCCeEEEEeCCceE
Q psy6552 92 GDFYYELSVQIVEVCLATNYKN---GGLILLDELRTRLVKSRGKSLQHQDITNEDLLAAAKKLKIFGNGFSIIPIGQGQY 168 (254)
Q Consensus 92 gdfy~eLavqive~c~~~r~~n---GGii~L~dl~~~~nr~Rg~~~~~~~IS~~Di~rA~~~L~~Lg~g~~l~~~~sg~~ 168 (254)
.+++.++..+|.+.+...-.+| -| |+..+|..++.+ .+++.-+...++.|..=|. |..-+ |
T Consensus 61 ~~~~~~~~~~l~~~L~~~H~~~P~~~G-~~~~~L~~~~~~---------~~~~~l~~~ll~~l~~~g~---l~~~~-~-- 124 (258)
T 1lva_A 61 TERYQAWWQAVTRALEEFHSRYPLRPG-LAREELRSRYFS---------RLPARVYQALLEEWSREGR---LQLAA-N-- 124 (258)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCTTSSC-EEHHHHHHHHCT---------TSCHHHHHHHHHHHHHTTS---EEEET-T--
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCccC-CCHHHHHHhccc---------cCCHHHHHHHHHHHHHCCC---EEecC-C--
Confidence 5889999999999988754332 33 889999888742 3466666555566655442 22223 3
Q ss_pred EEEccC--CCCChhHHHHHH----HhhccCCCc--ccHHHHHHhcCCCHHHHHHHHHHHHHcCcEEEeCCCCCcccceec
Q psy6552 169 LVQSIP--GELSLDHSLVLQ----QVASKNEAH--ISVSVLNNELNWSTERAQHALDFMVQEGYAWIDTQSPQEHLYWFP 240 (254)
Q Consensus 169 vv~s~p--~els~D~~~il~----l~~~~~~g~--vt~~~l~~~l~ws~~ra~~~L~~l~~~G~lwvD~q~~~e~~yw~p 240 (254)
+|+... ..++.++..+.+ .... .|+ -++.+|+..++.+...+.++|..|.+.|.+..= .+..||-+
T Consensus 125 ~v~l~~h~~~~~~~~~~~~~~i~~~~~~--~g~~pp~~~dl~~~l~~~~~~~~~~l~~l~~~g~lv~l----~~~~~~~~ 198 (258)
T 1lva_A 125 TVALAGFTPSFSETQKKLLKDLEDKYRV--SRWQPPSFKEVAGSFNLDPSELEELLHYLVREGVLVKI----NDEFYWHR 198 (258)
T ss_dssp EEEETTCCCCCCHHHHHHHHHHHHHHHH--HTTSCCBHHHHHHHTTCCHHHHHHHHHHHHHTTSEEES----SSSBEEEH
T ss_pred EEeCCCCccCCCHHHHHHHHHHHHHHHH--CCCCCCCHHHHHhHhCCCHHHHHHHHHHHHHCCCEEEe----cCCeEEcH
Confidence 344433 246767665533 3331 343 478999999999999999999999999988764 24567665
Q ss_pred ccc
Q psy6552 241 SLF 243 (254)
Q Consensus 241 ~lf 243 (254)
..+
T Consensus 199 ~~~ 201 (258)
T 1lva_A 199 QAL 201 (258)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 226
>3u0k_A Rcamp; fluorescent protein, calcium binding, EF-hand, genetically E calcium indicator; HET: NFA CRK; 2.10A {Entacmaea quadricolor}
Probab=58.71 E-value=12 Score=35.31 Aligned_cols=91 Identities=15% Similarity=0.313 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHhhhhhhcCHHHHHHHHHHHHHcCCCcccCCCccccccccchhHHHHHHHHHHHhhhhhhhcCCce
Q psy6552 38 HLNTFRDKLESFASEYKNEIKKDAQFRRHFQEMCASIGVDPLASRKGFWSLLGMGDFYYELSVQIVEVCLATNYKNGGLI 117 (254)
Q Consensus 38 ql~~fk~~L~~FA~kh~~~I~~dp~fr~~f~~mc~~lGVdPl~s~kg~w~~lg~gdfy~eLavqive~c~~~r~~nGGii 117 (254)
|++.+|+....|=....+.|. +.+|..++.++|++|-.. +|-++....-..+-|.|
T Consensus 300 EI~ELREaF~~fDkDgdG~IS-----~eELk~aLrsLG~~~Tee-------------------EI~~Lf~~~D~DgDG~I 355 (440)
T 3u0k_A 300 QIAEFKEAFSLFDKDGDGTIT-----TKELGTVMRSLGQNPTEA-------------------ELQDMINEVDADGDGTI 355 (440)
T ss_dssp HHHHHHHHHHHHCTTCSSEEC-----HHHHHHHHHHTTCCCCHH-------------------HHHHHHHHHCSSCSSSE
T ss_pred HHHHHHHHHHHHcCCCCCEEC-----HHHHHHHHHHcCCCCCHH-------------------HHHHHHHHhCCCCCCcC
Confidence 344445544445333344442 236778888889876421 11122211112234677
Q ss_pred eHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHhhhhCCC
Q psy6552 118 LLDELRTRLVKSRGKSLQHQDITNEDLLAAAKKLKIFGNG 157 (254)
Q Consensus 118 ~L~dl~~~~nr~Rg~~~~~~~IS~~Di~rA~~~L~~Lg~g 157 (254)
+..|....+.+... ..-++++|.+|.+.+..=|.|
T Consensus 356 dFeEFl~lms~~lk-----~~d~eeeLreAFk~fDkDgdG 390 (440)
T 3u0k_A 356 DFPEFLIMMARKMK-----DTDSEEEIREAFRVFDKDGNG 390 (440)
T ss_dssp EHHHHHHHHHTC-----------CHHHHHHHHHHCTTCSS
T ss_pred cHHHHHHHHHHHhc-----CCChHHHHHHHHHHHCCCCcC
Confidence 77777666654321 123445566665555443433
No 227
>3u1d_A Uncharacterized protein; GNTR-superfamily, structural genomics, PSI-biology, midwest for structural genomics, MCSG; 1.80A {Halomicrobium mukohataei}
Probab=58.53 E-value=21 Score=28.70 Aligned_cols=46 Identities=20% Similarity=0.115 Sum_probs=37.1
Q ss_pred HHHHHhhccCCCcccHHHHHHhcC-CCHHHHHHHHHHHHHcCcEEEe
Q psy6552 183 LVLQQVASKNEAHISVSVLNNELN-WSTERAQHALDFMVQEGYAWID 228 (254)
Q Consensus 183 ~il~l~~~~~~g~vt~~~l~~~l~-ws~~ra~~~L~~l~~~G~lwvD 228 (254)
.|+..+-....+..|+.+|.+.++ +|..-....|+.|++.|++-.=
T Consensus 33 ~IL~~Ll~~p~~~~ta~eL~~~l~~lS~aTVyrhL~~L~eaGLV~~~ 79 (151)
T 3u1d_A 33 DVLHQILAQPDGVLSVEELLYRNPDETEANLRYHVDELVDRGIVEKI 79 (151)
T ss_dssp HHHHHHHHSTTSCBCHHHHHHHCTTSCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHcCCCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHCCCeEEe
Confidence 445544322356799999999999 9999999999999999999853
No 228
>3eet_A Putative GNTR-family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.97A {Streptomyces avermitilis}
Probab=57.65 E-value=11 Score=32.74 Aligned_cols=38 Identities=18% Similarity=0.157 Sum_probs=33.4
Q ss_pred CCcc-cHHHHHHhcCCCHHHHHHHHHHHHHcCcEEEeCC
Q psy6552 193 EAHI-SVSVLNNELNWSTERAQHALDFMVQEGYAWIDTQ 230 (254)
Q Consensus 193 ~g~v-t~~~l~~~l~ws~~ra~~~L~~l~~~G~lwvD~q 230 (254)
+..+ |..+|++.+|.|..-++++|..|+++|++-+-..
T Consensus 50 g~~lPse~~La~~~~vSr~tvr~Al~~L~~~G~i~~~~g 88 (272)
T 3eet_A 50 HTRLPSQARIREEYGVSDTVALEARKVLMAEGLVEGRSG 88 (272)
T ss_dssp TSBCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECCC
T ss_pred cCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEecC
Confidence 3456 9999999999999999999999999999876543
No 229
>2i3o_A Gamma-glutamyltransferase related protein; structural genomics, PSI, protein structure initiative; 2.03A {Thermoplasma acidophilum} SCOP: d.153.1.6
Probab=57.61 E-value=5.5 Score=38.30 Aligned_cols=32 Identities=25% Similarity=0.312 Sum_probs=25.7
Q ss_pred ccchhHH-HHHHHHHHHhhhhhhhcCCceeHHHHHHH
Q psy6552 90 GMGDFYY-ELSVQIVEVCLATNYKNGGLILLDELRTR 125 (254)
Q Consensus 90 g~gdfy~-eLavqive~c~~~r~~nGGii~L~dl~~~ 125 (254)
|...||. ++|.+|++.+. .+||+||++||-..
T Consensus 199 G~~~FY~G~iA~~iv~~~~----~~GG~lt~~DLa~y 231 (516)
T 2i3o_A 199 GFRSFYDGSLADIIIAGLE----GTGSPLSDRDLRVY 231 (516)
T ss_dssp CTTHHHHSHHHHHHHHTTT----TTCCCCCHHHHHHC
T ss_pred CcccccCCHHHHHHHHHHH----HcCCCCCHHHHhhC
Confidence 4567887 79999988775 57999999999654
No 230
>1ufm_A COP9 complex subunit 4; helix-turn-helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: a.4.5.47
Probab=57.56 E-value=21 Score=25.67 Aligned_cols=43 Identities=21% Similarity=0.249 Sum_probs=35.8
Q ss_pred HHhhccCCCcccHHHHHHhcCCCHHHHHHHHHHHHHcCcE--EEeCC
Q psy6552 186 QQVASKNEAHISVSVLNNELNWSTERAQHALDFMVQEGYA--WIDTQ 230 (254)
Q Consensus 186 ~l~~~~~~g~vt~~~l~~~l~ws~~ra~~~L~~l~~~G~l--wvD~q 230 (254)
.+++ ..-.||.+.|++.++++++.++..|-.|+.+|-+ -+|..
T Consensus 23 ~is~--~Y~~Isl~~La~ll~ls~~~vE~~ls~mI~~~~l~akIDq~ 67 (84)
T 1ufm_A 23 SASK--LYNNITFEELGALLEIPAAKAEKIASQMITEGRMNGFIDQI 67 (84)
T ss_dssp HHHH--SCSEEEHHHHHHHTTSCHHHHHHHHHHHHHTTSSCEEEETT
T ss_pred HHHH--hcCeeeHHHHHHHHCcCHHHHHHHHHHHHhCCcEEEEEeCC
Confidence 3444 4677999999999999999999999999999985 46654
No 231
>1top_A Troponin C; contractIle system protein; 1.78A {Gallus gallus} SCOP: a.39.1.5 PDB: 1ncy_A 1ncz_A 1ncx_A 1ytz_C* 1yv0_C 1tnw_A 1tnx_A 5tnc_A 2w49_0 2w4u_0 4tnc_A 1a2x_A 1tcf_A 1tn4_A 2tn4_A 1aj4_A 1jc2_A 1fi5_A 1sbj_A 1scv_A ...
Probab=56.57 E-value=36 Score=25.19 Aligned_cols=13 Identities=15% Similarity=0.455 Sum_probs=8.9
Q ss_pred HHHHHHHHcCCCc
Q psy6552 66 HFQEMCASIGVDP 78 (254)
Q Consensus 66 ~f~~mc~~lGVdP 78 (254)
+|..++..+|+.|
T Consensus 41 e~~~~l~~~~~~~ 53 (162)
T 1top_A 41 ELGTVMRMLGQNP 53 (162)
T ss_dssp GHHHHHHHTTCCC
T ss_pred HHHHHHHHcCCCC
Confidence 5667777778764
No 232
>2e0w_A Gamma-glutamyltranspeptidase; NTN hydrolase, precursor, gamma-GTP, post-translational PROC maturation, transferase; 2.55A {Escherichia coli K12} SCOP: d.153.1.6
Probab=56.47 E-value=6.8 Score=38.01 Aligned_cols=32 Identities=38% Similarity=0.606 Sum_probs=25.9
Q ss_pred ccchhHH-HHHHHHHHHhhhhhhhcCCceeHHHHHHH
Q psy6552 90 GMGDFYY-ELSVQIVEVCLATNYKNGGLILLDELRTR 125 (254)
Q Consensus 90 g~gdfy~-eLavqive~c~~~r~~nGGii~L~dl~~~ 125 (254)
|...||. ++|.+|++.+. .+||+|+++||-..
T Consensus 214 G~~~FY~G~iA~~iv~~~~----~~GG~lt~~DLa~y 246 (556)
T 2e0w_A 214 GPDEFYKGTIAEQIAQEMQ----KNGGLITKEDLAAY 246 (556)
T ss_dssp CTHHHHHSHHHHHHHHHHH----HSSCCCCHHHHHTC
T ss_pred CcccccCCHHHHHHHHHHH----HcCCCcCHHHHhhC
Confidence 4557887 79999998875 57999999998754
No 233
>3ox6_A Calcium-binding protein 1; EF-hand, calcium-sensor; 2.40A {Homo sapiens} PDB: 3ox5_A 2lan_A 2lap_A 2k7b_A 2k7c_A 2k7d_A
Probab=56.33 E-value=54 Score=23.72 Aligned_cols=15 Identities=20% Similarity=0.388 Sum_probs=10.3
Q ss_pred HHHHHHHHHcCCCcc
Q psy6552 65 RHFQEMCASIGVDPL 79 (254)
Q Consensus 65 ~~f~~mc~~lGVdPl 79 (254)
.+|..++..+|..|-
T Consensus 31 ~el~~~l~~~~~~~~ 45 (153)
T 3ox6_A 31 RDLGNCMRTMGYMPT 45 (153)
T ss_dssp HHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHcCCCCC
Confidence 367777778887643
No 234
>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*
Probab=56.23 E-value=22 Score=31.31 Aligned_cols=37 Identities=5% Similarity=-0.030 Sum_probs=34.0
Q ss_pred CCcccHHHHHHhcCCCHHHHHHHHHHHHHcCcEEEeC
Q psy6552 193 EAHISVSVLNNELNWSTERAQHALDFMVQEGYAWIDT 229 (254)
Q Consensus 193 ~g~vt~~~l~~~l~ws~~ra~~~L~~l~~~G~lwvD~ 229 (254)
.|.+|+.+|++.+|.+.......|+.|...|++..+.
T Consensus 47 ~~~~t~~eLA~~~g~~~~~l~r~Lr~L~~~Gll~~~~ 83 (374)
T 1qzz_A 47 AGADTLAGLADRTDTHPQALSRLVRHLTVVGVLEGGE 83 (374)
T ss_dssp TTCCSHHHHHHHHTCCHHHHHHHHHHHHHTTSEECCC
T ss_pred CCCCCHHHHHHHhCcCHHHHHHHHHHHhhCCCEEEeC
Confidence 3679999999999999999999999999999998753
No 235
>2y8n_A 4-hydroxyphenylacetate decarboxylase large subuni; lyase, radical chemistry, metalloenzyme, iron-sulfur center; 1.75A {Clostridium scatologenes} PDB: 2yaj_A*
Probab=56.21 E-value=1.3e+02 Score=30.77 Aligned_cols=81 Identities=14% Similarity=0.210 Sum_probs=49.8
Q ss_pred hhhHHHhccHHHHHHHHhccc-c---hHHHHHHHHHHHHHHHHHHHHHHHHHhhhh------hhcCHHHHHHHHHHHHHc
Q psy6552 5 AGVGAIQKQKLEQEKYKDKGT-S---IQENQLEQLSQHLNTFRDKLESFASEYKNE------IKKDAQFRRHFQEMCASI 74 (254)
Q Consensus 5 vGi~~i~~~~~~~~~~~~~g~-~---l~~~~~~~L~~ql~~fk~~L~~FA~kh~~~------I~~dp~fr~~f~~mc~~l 74 (254)
-|+.||.+..+++.+...... + ...+...-+++.+..... +..||..|.+. ...||+-+.++.+|....
T Consensus 234 ~G~~gli~e~~~~l~~l~~~~~~~g~~~~~k~~fy~A~ii~~ea-vi~~a~RyA~laeelA~~e~d~~rk~EL~~ia~~~ 312 (897)
T 2y8n_A 234 YGFDGIIKLCDEKIAEVMGEAGDDGDFGMSRGYYYAAMKEITKG-LSAWCENYSKRAKYLASIETDSEIKANYEKIEEVM 312 (897)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCTTCTTTHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhcccccccccccchhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh
Confidence 588888876544333222100 0 011234455665555444 44677777422 237898889999999999
Q ss_pred CCCcccCCCccc
Q psy6552 75 GVDPLASRKGFW 86 (254)
Q Consensus 75 GVdPl~s~kg~w 86 (254)
+-+|.-..++||
T Consensus 313 ~~v~~~pa~tf~ 324 (897)
T 2y8n_A 313 GNIAHKKPANFW 324 (897)
T ss_dssp HHHTTSCCCSHH
T ss_pred CccccCCCCCHH
Confidence 999988777666
No 236
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=55.85 E-value=17 Score=21.50 Aligned_cols=46 Identities=15% Similarity=0.035 Sum_probs=31.4
Q ss_pred CCCCChhHH-HHHHHhhccCCCcccHHHHHHhcCCCHHHHHHHHHHHHHcC
Q psy6552 174 PGELSLDHS-LVLQQVASKNEAHISVSVLNNELNWSTERAQHALDFMVQEG 223 (254)
Q Consensus 174 p~els~D~~-~il~l~~~~~~g~vt~~~l~~~l~ws~~ra~~~L~~l~~~G 223 (254)
|..++.++. .++.+.. . +.|..++++.+|++..-....+......|
T Consensus 3 ~~~l~~~~~~~i~~~~~---~-g~s~~~IA~~lgis~~Tv~~~~~~~~~~g 49 (51)
T 1tc3_C 3 GSALSDTERAQLDVMKL---L-NVSLHEMSRKISRSRHCIRVYLKDPVSYG 49 (51)
T ss_dssp SCCCCHHHHHHHHHHHH---T-TCCHHHHHHHHTCCHHHHHHHHHCSTTTT
T ss_pred CCCCCHHHHHHHHHHHH---c-CCCHHHHHHHHCcCHHHHHHHHhhHHhcC
Confidence 334665554 5555554 2 37999999999999988877776554444
No 237
>1exr_A Calmodulin; high resolution, disorder, metal transport; 1.00A {Paramecium tetraurelia} SCOP: a.39.1.5 PDB: 1n0y_A 1osa_A 1clm_A 1mxe_A 2bbm_A 2bbn_A 4cln_A 4djc_A 2wel_D* 2x51_B 2vas_B* 2bkh_B 3gn4_B 3l9i_C 2ygg_B* 2w73_A 1lvc_D* 1wrz_A 2bki_B 2r28_A ...
Probab=54.94 E-value=59 Score=23.87 Aligned_cols=15 Identities=20% Similarity=0.505 Sum_probs=9.7
Q ss_pred HHHHHHHHHcCCCcc
Q psy6552 65 RHFQEMCASIGVDPL 79 (254)
Q Consensus 65 ~~f~~mc~~lGVdPl 79 (254)
.+|..++..+|.+|-
T Consensus 30 ~el~~~l~~~g~~~~ 44 (148)
T 1exr_A 30 KELGTVMRSLGQNPT 44 (148)
T ss_dssp HHHHHHHHHHTCCCC
T ss_pred HHHHHHHHHcCCCCC
Confidence 356667777777653
No 238
>1wdc_C Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} SCOP: a.39.1.5 PDB: 1kk7_Z 1kqm_C* 1kwo_C* 1l2o_C* 1qvi_Z* 1s5g_Z* 1sr6_C 1b7t_Z 3jvt_C 3jtd_C 1kk8_C* 2ec6_C 1dfk_Z 1dfl_Z* 2w4t_Z 2w4v_Z 2w4w_Z 2otg_C* 2os8_C* 3pn7_C ...
Probab=54.43 E-value=39 Score=24.98 Aligned_cols=33 Identities=18% Similarity=0.497 Sum_probs=18.2
Q ss_pred HHHHHHHHHH--HhhhhhhcCHHHHHHHHHHHHHcCCCcc
Q psy6552 42 FRDKLESFAS--EYKNEIKKDAQFRRHFQEMCASIGVDPL 79 (254)
Q Consensus 42 fk~~L~~FA~--kh~~~I~~dp~fr~~f~~mc~~lGVdPl 79 (254)
++.....|-. ...+.|..+ +|..++.++|+.|-
T Consensus 11 l~~~F~~~D~~~d~~G~i~~~-----el~~~l~~~g~~~~ 45 (156)
T 1wdc_C 11 LKDVFELFDFWDGRDGAVDAF-----KLGDVCRCLGINPR 45 (156)
T ss_dssp HHHHHHHHHHHTCSSSCEEGG-----GHHHHHHHTTCCCC
T ss_pred HHHHHHHHccCCCCCCCCcHH-----HHHHHHHHcCCCCC
Confidence 3444444554 444445332 56677778887653
No 239
>2p8t_A Hypothetical protein PH0730; pyrococcus horikoshii OT3, STR genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.72 d.74.4.2
Probab=54.41 E-value=27 Score=29.31 Aligned_cols=36 Identities=6% Similarity=0.036 Sum_probs=33.6
Q ss_pred CcccHHHHHHhcCCCHHHHHHHHHHHHHcCcEEEeC
Q psy6552 194 AHISVSVLNNELNWSTERAQHALDFMVQEGYAWIDT 229 (254)
Q Consensus 194 g~vt~~~l~~~l~ws~~ra~~~L~~l~~~G~lwvD~ 229 (254)
+.++..+|++.+|.++.-+.+.|+.|.+.|++-++.
T Consensus 29 ~~V~~~~LA~~LgvS~~SV~~~lkkL~e~GLV~~~~ 64 (200)
T 2p8t_A 29 EPLGRKQISERLELGEGSVRTLLRKLSHLDIIRSKQ 64 (200)
T ss_dssp SCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEC-
T ss_pred CCccHHHHHHHhCCCHHHHHHHHHHHHHCCCEEEeC
Confidence 569999999999999999999999999999999987
No 240
>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}
Probab=54.27 E-value=23 Score=31.45 Aligned_cols=36 Identities=11% Similarity=0.127 Sum_probs=33.8
Q ss_pred CCcccHHHHHHhcCCCHHHHHHHHHHHHHcCcEEEe
Q psy6552 193 EAHISVSVLNNELNWSTERAQHALDFMVQEGYAWID 228 (254)
Q Consensus 193 ~g~vt~~~l~~~l~ws~~ra~~~L~~l~~~G~lwvD 228 (254)
.|.+|+++|++.+|.++......|+.|...|++-.|
T Consensus 48 ~~~~t~~eLA~~~g~~~~~l~rlLr~l~~~g~l~~~ 83 (363)
T 3dp7_A 48 REGYTLQEISGRTGLTRYAAQVLLEASLTIGTILLE 83 (363)
T ss_dssp TTCBCHHHHHHHHTCCHHHHHHHHHHHHHHTSEEEE
T ss_pred CCCCCHHHHHHHhCcCHHHHHHHHHHHhhCCCeEec
Confidence 478999999999999999999999999999999775
No 241
>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}
Probab=53.89 E-value=22 Score=30.60 Aligned_cols=36 Identities=17% Similarity=0.141 Sum_probs=33.5
Q ss_pred CCcccHHHHHHhcCCCHHHHHHHHHHHHHcCcEEEe
Q psy6552 193 EAHISVSVLNNELNWSTERAQHALDFMVQEGYAWID 228 (254)
Q Consensus 193 ~g~vt~~~l~~~l~ws~~ra~~~L~~l~~~G~lwvD 228 (254)
.|.+|+.+|++.+|.++......|+.|...|++-.+
T Consensus 37 ~~~~t~~ela~~~~~~~~~l~r~L~~L~~~g~l~~~ 72 (335)
T 2r3s_A 37 QGIESSQSLAQKCQTSERGMRMLCDYLVIIGFMTKQ 72 (335)
T ss_dssp TSEECHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred cCCCCHHHHHHHhCCCchHHHHHHHHHHhcCCeEec
Confidence 378999999999999999999999999999999765
No 242
>3qrx_A Centrin; calcium-binding, EF-hand, cell division, calcium binding, ME binding protein-toxin complex; 2.20A {Chlamydomonas reinhardtii} PDB: 2ggm_A 2ami_A 1zmz_A
Probab=53.40 E-value=66 Score=23.95 Aligned_cols=14 Identities=14% Similarity=0.558 Sum_probs=9.8
Q ss_pred HHHHHHHHHcCCCc
Q psy6552 65 RHFQEMCASIGVDP 78 (254)
Q Consensus 65 ~~f~~mc~~lGVdP 78 (254)
.+|..++..+|+.|
T Consensus 48 ~el~~~l~~~~~~~ 61 (169)
T 3qrx_A 48 KELKVAMRALGFEP 61 (169)
T ss_dssp HHHHHHHHHTSCCC
T ss_pred HHHHHHHHHcCCCC
Confidence 36677777788764
No 243
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=53.23 E-value=1e+02 Score=26.82 Aligned_cols=75 Identities=13% Similarity=0.235 Sum_probs=53.1
Q ss_pred CCCCHHHHHHHHHHhhhhCCCeEEEEeCCceEEEEccCCCCChhHHHHHH-HhhccCCCcccHHHHHHhcCCCHHHHHHH
Q psy6552 137 QDITNEDLLAAAKKLKIFGNGFSIIPIGQGQYLVQSIPGELSLDHSLVLQ-QVASKNEAHISVSVLNNELNWSTERAQHA 215 (254)
Q Consensus 137 ~~IS~~Di~rA~~~L~~Lg~g~~l~~~~sg~~vv~s~p~els~D~~~il~-l~~~~~~g~vt~~~l~~~l~ws~~ra~~~ 215 (254)
..||++++..|++.+.. + . ..++.....+++ +++...+|.+....|+..+|.++.-.+++
T Consensus 236 ~~It~~~v~~al~~~~~----------~-~--------~~l~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~t~~~~ 296 (334)
T 1in4_A 236 DRINTDIVLKTMEVLNI----------D-D--------EGLDEFDRKILKTIIEIYRGGPVGLNALAASLGVEADTLSEV 296 (334)
T ss_dssp SSBCHHHHHHHHHHHTC----------C-T--------TCCCHHHHHHHHHHHHHSTTCCBCHHHHHHHHTSCHHHHHHH
T ss_pred CCcCHHHHHHHHHHhCC----------C-c--------CCCCHHHHHHHHHHHHHhCCCcchHHHHHHHhCCCcchHHHH
Confidence 47999999999888641 1 0 114433334544 44432256799999999999998877777
Q ss_pred HH-HHHHcCcEEEeCC
Q psy6552 216 LD-FMVQEGYAWIDTQ 230 (254)
Q Consensus 216 L~-~l~~~G~lwvD~q 230 (254)
.+ .|++.|++=+...
T Consensus 297 ~~~~l~~~g~i~~~~~ 312 (334)
T 1in4_A 297 YEPYLLQAGFLARTPR 312 (334)
T ss_dssp THHHHHHTTSEEEETT
T ss_pred HHHHHHHcCCeecccc
Confidence 77 6999999988865
No 244
>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}
Probab=53.03 E-value=24 Score=30.48 Aligned_cols=36 Identities=19% Similarity=0.079 Sum_probs=34.0
Q ss_pred CcccHHHHHHhcCCCHHHHHHHHHHHHHcCcEEEeC
Q psy6552 194 AHISVSVLNNELNWSTERAQHALDFMVQEGYAWIDT 229 (254)
Q Consensus 194 g~vt~~~l~~~l~ws~~ra~~~L~~l~~~G~lwvD~ 229 (254)
|.+|+.+|++.+|.++......|+.|...|++..++
T Consensus 40 ~~~t~~ela~~~~~~~~~l~r~Lr~L~~~g~l~~~~ 75 (334)
T 2ip2_A 40 GIDSDETLAAAVGSDAERIHRLMRLLVAFEIFQGDT 75 (334)
T ss_dssp TCCSHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEET
T ss_pred CCCCHHHHHHHhCcCHHHHHHHHHHHHhCCceEecC
Confidence 679999999999999999999999999999999874
No 245
>2qq9_A Diphtheria toxin repressor; regulator, DTXR, helix-turn-helix, metal ION, ACT DNA-binding, ferrous iron, transcription; 1.71A {Corynebacterium diphtheriae} PDB: 2tdx_A 1ddn_A 1g3t_A 1g3s_A 1g3w_A 2qqa_A 2qqb_A 2dtr_A 1bi0_A 1bi2_A 1bi3_A 1dpr_A 1bi1_A 1fwz_A 1g3y_A 1c0w_A* 3glx_A 1p92_A 1xcv_A 1f5t_A ...
Probab=52.76 E-value=22 Score=29.63 Aligned_cols=35 Identities=11% Similarity=0.135 Sum_probs=31.4
Q ss_pred cccHHHHHHhcCCCHHHHHHHHHHHHHcCcEEEeC
Q psy6552 195 HISVSVLNNELNWSTERAQHALDFMVQEGYAWIDT 229 (254)
Q Consensus 195 ~vt~~~l~~~l~ws~~ra~~~L~~l~~~G~lwvD~ 229 (254)
..+..+|++.+++++.-+...|+.|+++|++-+..
T Consensus 24 ~~~~~~la~~l~vs~~tvs~~l~~Le~~GlV~r~~ 58 (226)
T 2qq9_A 24 TPLRARIAERLEQSGPTVSQTVARMERDGLVVVAS 58 (226)
T ss_dssp CCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECT
T ss_pred CccHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEeC
Confidence 34559999999999999999999999999998864
No 246
>3f2g_A Alkylmercury lyase; MERB, organomercurial lyase, mercury resistance, mercuric resistance, plasmid; 1.78A {Escherichia coli} PDB: 3f2h_A 3fn8_A 1s6l_A 3f0o_A 3f0p_A 3f2f_A
Probab=52.58 E-value=18 Score=30.95 Aligned_cols=43 Identities=23% Similarity=0.358 Sum_probs=34.7
Q ss_pred HHHHHhhccCCCcccHHHHHHhcCCCHHHHHHHHHHHHHcCcEEEeCC
Q psy6552 183 LVLQQVASKNEAHISVSVLNNELNWSTERAQHALDFMVQEGYAWIDTQ 230 (254)
Q Consensus 183 ~il~l~~~~~~g~vt~~~l~~~l~ws~~ra~~~L~~l~~~G~lwvD~q 230 (254)
.++.+.. .+.-+|..+|+..+||+.+.+..+|..+ +.+-.|++
T Consensus 26 ~llr~la--~Grpv~~~~LA~~~g~~~~~v~~~L~~l---~~~~~D~~ 68 (220)
T 3f2g_A 26 PLLRELA--KGRPVSRTTLAGILDWPAERVAAVLEQA---TSTEYDKD 68 (220)
T ss_dssp HHHHHHT--TTSCBCHHHHHHHHTCCHHHHHHHHHHC---TTCEECTT
T ss_pred HHHHHHh--cCCCCCHHHHHHHhCcCHHHHHHHHHhC---CcEEECCC
Confidence 4455555 3678999999999999999999998886 36678887
No 247
>2o0m_A Transcriptional regulator, SORC family; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Enterococcus faecalis} SCOP: c.124.1.8
Probab=52.37 E-value=3 Score=37.52 Aligned_cols=50 Identities=10% Similarity=0.043 Sum_probs=0.0
Q ss_pred CChhHHHHHHHhhccCCCcccHHHHHHhcCCCHHHHHHHHHHHHHcCcEEEe
Q psy6552 177 LSLDHSLVLQQVASKNEAHISVSVLNNELNWSTERAQHALDFMVQEGYAWID 228 (254)
Q Consensus 177 ls~D~~~il~l~~~~~~g~vt~~~l~~~l~ws~~ra~~~L~~l~~~G~lwvD 228 (254)
+..-+..+|.... ..+.+|..+|++.+|.|..-....|+.|+++|++-+-
T Consensus 18 ~~~r~~~iL~~l~--~~~~~t~~eLa~~l~vs~~Tv~r~l~~Le~~Glv~~~ 67 (345)
T 2o0m_A 18 VLQERFQILRNIY--WMQPIGRRSLSETMGITERVLRTETDVLKQLNLIEPS 67 (345)
T ss_dssp ----------------------------------------------------
T ss_pred hhHHHHHHHHHHH--HcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 3444667777776 3578999999999999999999999999999999643
No 248
>1id3_B Histone H4; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=51.94 E-value=32 Score=25.63 Aligned_cols=61 Identities=16% Similarity=0.247 Sum_probs=35.9
Q ss_pred HHHHHHHHcCCCcccCCCccccccccchhHHHHHHHHHHHhhhhhhhcCCceeHHHHHHHHHHhcCCCCCCCCCCHHHHH
Q psy6552 66 HFQEMCASIGVDPLASRKGFWSLLGMGDFYYELSVQIVEVCLATNYKNGGLILLDELRTRLVKSRGKSLQHQDITNEDLL 145 (254)
Q Consensus 66 ~f~~mc~~lGVdPl~s~kg~w~~lg~gdfy~eLavqive~c~~~r~~nGGii~L~dl~~~~nr~Rg~~~~~~~IS~~Di~ 145 (254)
....++.+.||.-++ ++-|.+|+.-+-++... + +.|+...-..+.- -.|+++||.
T Consensus 33 ~I~Rlar~~Gv~rIS-----------~da~~~l~~~le~fi~~-------I--~~dA~~~a~HakR-----KTVt~~DV~ 87 (102)
T 1id3_B 33 AIRRLARRGGVKRIS-----------GLIYEEVRAVLKSFLES-------V--IRDSVTYTEHAKR-----KTVTSLDVV 87 (102)
T ss_dssp HHHHHHHHTTCCEEC-----------TTHHHHHHHHHHHHHHH-------H--HHHHHHHHHHTTC-----SEECHHHHH
T ss_pred HHHHHHHHcCchhcc-----------HHHHHHHHHHHHHHHHH-------H--HHHHHHHHHHcCC-----CcCcHHHHH
Confidence 456677788875443 46666665555444443 1 1233322233221 479999999
Q ss_pred HHHHHh
Q psy6552 146 AAAKKL 151 (254)
Q Consensus 146 rA~~~L 151 (254)
-|++.+
T Consensus 88 ~ALkr~ 93 (102)
T 1id3_B 88 YALKRQ 93 (102)
T ss_dssp HHHHHT
T ss_pred HHHHHc
Confidence 999876
No 249
>2xub_A DNA-directed RNA polymerase III subunit RPC3; transcription, winged helix; 2.80A {Homo sapiens} PDB: 2xv4_S
Probab=51.62 E-value=63 Score=30.70 Aligned_cols=124 Identities=16% Similarity=0.128 Sum_probs=72.2
Q ss_pred HHHHHHHHHhhhhh-------hhcCCceeHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHhhhhCCCeEEEEeC---Cc
Q psy6552 97 ELSVQIVEVCLATN-------YKNGGLILLDELRTRLVKSRGKSLQHQDITNEDLLAAAKKLKIFGNGFSIIPIG---QG 166 (254)
Q Consensus 97 eLavqive~c~~~r-------~~nGGii~L~dl~~~~nr~Rg~~~~~~~IS~~Di~rA~~~L~~Lg~g~~l~~~~---sg 166 (254)
+.+-+|++.++.-. ...+--|++.|+...+.. . ..++.+.|.+-++.|..=..+| +...+ .|
T Consensus 261 ~~a~~V~~~lL~~~e~~~~~~~~~s~~is~~~I~~~l~~---~----~~l~~~~l~~~L~lL~~~~~~f-v~~~g~~g~g 332 (534)
T 2xub_A 261 QTSSEIVRTMLRMSEITTSSSAPFTQPLSSNEIFRSLPV---G----YNISKQVLDQYLTLLADDPLEF-VGKSGDSGGG 332 (534)
T ss_dssp HHHHHHHHHHHHTTTTTSCTTCSBCCCEEHHHHHHTSCT---T----CCCCHHHHHHHHHHHHSCTTCC-EEECCCCSSC
T ss_pred cHHHHHHHHHHHHhhccCCccccCCCcccHHHHHHHcCC---c----ccccHHHHHHHHHHHhCCcHHh-hhccccCCCc
Confidence 34556666666311 124557888898877722 1 4789999999999987633445 23322 23
Q ss_pred eEEEEccCC--C-------------CChhHHHHHHHhhccCCCcccHHHHHHhcCCCHHHHHHHHHHHHHcCcEEEeCC
Q psy6552 167 QYLVQSIPG--E-------------LSLDHSLVLQQVASKNEAHISVSVLNNELNWSTERAQHALDFMVQEGYAWIDTQ 230 (254)
Q Consensus 167 ~~vv~s~p~--e-------------ls~D~~~il~l~~~~~~g~vt~~~l~~~l~ws~~ra~~~L~~l~~~G~lwvD~q 230 (254)
...|..... - +...-.+|+.+.. ..|.++.++|++..+.+..-++..|..|.+.|++-+=+-
T Consensus 333 ~y~V~~~~~~~~lr~~~ie~ii~~~~G~~a~RI~r~L~--~~~~l~d~~ia~~a~i~~k~vR~~Ly~L~~~g~v~~qev 409 (534)
T 2xub_A 333 MYVINLHKALASLATATLESVVQERFGSRCARIFRLVL--QKKHIEQKQVEDFAMIPAKEAKDMLYKMLSENFMSLQEI 409 (534)
T ss_dssp EEEEBHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH--HC---CHHHHHHHHCSCHHHHHHHHHHHHHTTCC-----
T ss_pred eEEEeHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHH--HcCCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCeEEEEc
Confidence 443322110 0 0000111222233 258999999999999999999999999999999876543
No 250
>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*
Probab=51.47 E-value=24 Score=30.86 Aligned_cols=37 Identities=16% Similarity=0.115 Sum_probs=34.2
Q ss_pred CCcccHHHHHHhcCCCHHHHHHHHHHHHHcCcEEEeC
Q psy6552 193 EAHISVSVLNNELNWSTERAQHALDFMVQEGYAWIDT 229 (254)
Q Consensus 193 ~g~vt~~~l~~~l~ws~~ra~~~L~~l~~~G~lwvD~ 229 (254)
.|..|+.+|++.+|.+.......|+.|...|++..+.
T Consensus 50 ~~~~t~~ela~~~~~~~~~l~r~L~~L~~~g~~~~~~ 86 (360)
T 1tw3_A 50 AGARTVKALAARTDTRPEALLRLIRHLVAIGLLEEDA 86 (360)
T ss_dssp TTCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCCCCHHHHHHHhCcCHHHHHHHHHHHHHCCCEEecC
Confidence 3679999999999999999999999999999999864
No 251
>2hoe_A N-acetylglucosamine kinase; TM1224, structural genomics, PSI-2, protein structure initiative, joint center structural genomics, JCSG; 2.46A {Thermotoga maritima} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=50.99 E-value=14 Score=33.25 Aligned_cols=44 Identities=16% Similarity=0.274 Sum_probs=39.2
Q ss_pred HHHHHhhccCCCcccHHHHHHhcCCCHHHHHHHHHHHHHcCcEEEeC
Q psy6552 183 LVLQQVASKNEAHISVSVLNNELNWSTERAQHALDFMVQEGYAWIDT 229 (254)
Q Consensus 183 ~il~l~~~~~~g~vt~~~l~~~l~ws~~ra~~~L~~l~~~G~lwvD~ 229 (254)
.|+++.. . |.+|..+|++.+|+|+.-+...++.|+++|++---.
T Consensus 24 ~il~~l~-~--~~~sr~~la~~~gls~~tv~~~v~~L~~~gli~~~~ 67 (380)
T 2hoe_A 24 RILKRIM-K--SPVSRVELAEELGLTKTTVGEIAKIFLEKGIVVEEK 67 (380)
T ss_dssp CSHHHHH-H--SCBCHHHHHHHHTCCHHHHHHHHHHHHHHTSEEEEE
T ss_pred HHHHHHH-c--CCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEeec
Confidence 4677777 5 789999999999999999999999999999997643
No 252
>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*
Probab=50.99 E-value=26 Score=30.79 Aligned_cols=36 Identities=11% Similarity=0.085 Sum_probs=33.9
Q ss_pred CcccHHHHHHhcCCCHHHHHHHHHHHHHcCcEEEeC
Q psy6552 194 AHISVSVLNNELNWSTERAQHALDFMVQEGYAWIDT 229 (254)
Q Consensus 194 g~vt~~~l~~~l~ws~~ra~~~L~~l~~~G~lwvD~ 229 (254)
|..|+.+|++.+|.++......|+.|...|++..++
T Consensus 63 ~~~t~~eLA~~~g~~~~~l~rlLr~L~~~gll~~~~ 98 (359)
T 1x19_A 63 GPKDLATLAADTGSVPPRLEMLLETLRQMRVINLED 98 (359)
T ss_dssp CCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEET
T ss_pred CCCCHHHHHHHhCcChHHHHHHHHHHHhCCCeEeeC
Confidence 679999999999999999999999999999999873
No 253
>3akb_A Putative calcium binding protein; EF-hand, metal binding protein; 1.50A {Streptomyces coelicolor} PDB: 3aka_A
Probab=50.35 E-value=73 Score=23.42 Aligned_cols=15 Identities=20% Similarity=0.149 Sum_probs=10.1
Q ss_pred CCCCHHHHHHHHHHh
Q psy6552 137 QDITNEDLLAAAKKL 151 (254)
Q Consensus 137 ~~IS~~Di~rA~~~L 151 (254)
..||.+++.+++..+
T Consensus 113 G~i~~~E~~~~l~~~ 127 (166)
T 3akb_A 113 GAVTVADTARALTAF 127 (166)
T ss_dssp SCCBHHHHHHHHHHT
T ss_pred CcCCHHHHHHHHHHh
Confidence 357777777776653
No 254
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=50.26 E-value=44 Score=22.33 Aligned_cols=44 Identities=14% Similarity=0.139 Sum_probs=33.5
Q ss_pred CCChhHHHHHHHhhcc-CCCcccHHHHHHhcCCCHHHHHHHHHHH
Q psy6552 176 ELSLDHSLVLQQVASK-NEAHISVSVLNNELNWSTERAQHALDFM 219 (254)
Q Consensus 176 els~D~~~il~l~~~~-~~g~vt~~~l~~~l~ws~~ra~~~L~~l 219 (254)
.|++.+..|+.+.-.. +..+.|..++++.+|+|...++..+..+
T Consensus 10 ~L~~~er~il~l~~~l~~~~~~s~~eIA~~l~is~~tV~~~~~ra 54 (73)
T 1ku3_A 10 KLSEREAMVLKMRKGLIDGREHTLEEVGAYFGVTRERIRQIENKA 54 (73)
T ss_dssp TSCHHHHHHHHHHHTTTTSSCCCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHhcccCCCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 4777788888776620 1146999999999999999998877654
No 255
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=50.24 E-value=45 Score=28.28 Aligned_cols=47 Identities=13% Similarity=0.061 Sum_probs=37.5
Q ss_pred hhHHHHHHHhhccCCCcccHHHHHHhc-----CCCHHHHHHHHHHHHHcCcEEEe
Q psy6552 179 LDHSLVLQQVASKNEAHISVSVLNNEL-----NWSTERAQHALDFMVQEGYAWID 228 (254)
Q Consensus 179 ~D~~~il~l~~~~~~g~vt~~~l~~~l-----~ws~~ra~~~L~~l~~~G~lwvD 228 (254)
.....++..+. . |.++..+|+..+ +.+...+..+|+.|++.|++..+
T Consensus 282 ~~~~~~l~~la--~-g~~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~~gli~~~ 333 (350)
T 2qen_A 282 PRYVDILRAIA--L-GYNRWSLIRDYLAVKGTKIPEPRLYALLENLKKMNWIVEE 333 (350)
T ss_dssp HHHHHHHHHHH--T-TCCSHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred hhHHHHHHHHH--h-CCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCEEec
Confidence 34556666666 3 557888998776 89999999999999999999876
No 256
>2mys_B Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus gallus} SCOP: a.39.1.5 PDB: 1i84_U* 1m8q_B* 1mvw_B* 1o18_E* 1o19_B* 1o1a_B* 1o1b_B* 1o1c_B* 1o1d_B* 1o1e_B* 1o1f_B* 1o1g_B* 2w4a_B 2w4g_B 2w4h_B
Probab=50.10 E-value=77 Score=23.61 Aligned_cols=15 Identities=20% Similarity=0.328 Sum_probs=11.0
Q ss_pred HHHHHHHHHcCC-Ccc
Q psy6552 65 RHFQEMCASIGV-DPL 79 (254)
Q Consensus 65 ~~f~~mc~~lGV-dPl 79 (254)
.+|..++..+|. +|-
T Consensus 45 ~el~~~l~~~g~~~~~ 60 (166)
T 2mys_B 45 DDLRETFAAMGRLNVK 60 (166)
T ss_pred HHHHHHHHHhCCCCCC
Confidence 477788888888 643
No 257
>3maj_A DNA processing chain A; MCSG, PSI-2, structural genomics, protein structure initiati midwest center for structural genomics; HET: DNA; 2.05A {Rhodopseudomonas palustris}
Probab=50.09 E-value=20 Score=33.13 Aligned_cols=50 Identities=12% Similarity=-0.016 Sum_probs=44.3
Q ss_pred CCChhHHHHHHHhhccCCCcccHHHHHHhcCCCHHHHHHHHHHHHHcCcEEEe
Q psy6552 176 ELSLDHSLVLQQVASKNEAHISVSVLNNELNWSTERAQHALDFMVQEGYAWID 228 (254)
Q Consensus 176 els~D~~~il~l~~~~~~g~vt~~~l~~~l~ws~~ra~~~L~~l~~~G~lwvD 228 (254)
.++.++..|+++.. .+-+++++|+...|++.......|.+|+-.|++-..
T Consensus 325 ~l~~~~~~vl~~l~---~~~~~~D~l~~~~gl~~~~v~~~L~~LEl~G~v~~~ 374 (382)
T 3maj_A 325 PDTGDRTRILALLG---PSPVGIDDLIRLSGISPAVVRTILLELELAGRLERH 374 (382)
T ss_dssp CCTTHHHHHHHHCC---SSCEEHHHHHHHHCCCHHHHHHHHHHHHHTTCCEEC
T ss_pred CCChHHHHHHHhhC---CCCCCHHHHHHHHCcCHHHHHHHHHHHHhCCcEEeC
Confidence 37778889999887 357999999999999999999999999999999664
No 258
>3cta_A Riboflavin kinase; structural genomics, transferase, PSI-2, protein structure initiative; 2.20A {Thermoplasma acidophilum dsm 1728} SCOP: a.4.5.28 b.43.5.2
Probab=49.90 E-value=23 Score=29.48 Aligned_cols=52 Identities=17% Similarity=0.167 Sum_probs=40.2
Q ss_pred ChhHHHHHHHhhcc----CCCcccHHHHHHhcCCCHHHHHHHHHHHHHcCcEEEeC
Q psy6552 178 SLDHSLVLQQVASK----NEAHISVSVLNNELNWSTERAQHALDFMVQEGYAWIDT 229 (254)
Q Consensus 178 s~D~~~il~l~~~~----~~g~vt~~~l~~~l~ws~~ra~~~L~~l~~~G~lwvD~ 229 (254)
...+..++...... ..+.+|.+++++.+++|..-....|..|++.|++-+..
T Consensus 6 ~~~~l~~l~~l~~~~~l~~~~~~s~s~aA~~L~isq~avSr~I~~LE~~~L~~R~~ 61 (230)
T 3cta_A 6 DDQYYRAIKKIKEAAEASNRAYLTSSKLADMLGISQQSASRIIIDLEKNGYITRTV 61 (230)
T ss_dssp -CHHHHHHHHHHHHTTTSSEEECCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHHHHhcccccCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEE
Confidence 34566665544321 12468999999999999999999999999999999984
No 259
>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*
Probab=49.69 E-value=37 Score=29.37 Aligned_cols=37 Identities=14% Similarity=0.143 Sum_probs=34.3
Q ss_pred CCcccHHHHHHhcCCCHHHHHHHHHHHHHcCcEEEeC
Q psy6552 193 EAHISVSVLNNELNWSTERAQHALDFMVQEGYAWIDT 229 (254)
Q Consensus 193 ~g~vt~~~l~~~l~ws~~ra~~~L~~l~~~G~lwvD~ 229 (254)
.|.+|+.+|++.+|+++......|+.|...|++-.++
T Consensus 36 ~g~~t~~elA~~~~~~~~~l~rlLr~l~~~gl~~~~~ 72 (332)
T 3i53_A 36 AGHRTAAEIASAAGAHADSLDRLLRHLVAVGLFTRDG 72 (332)
T ss_dssp TTCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECT
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHHHHhCCcEEecC
Confidence 3689999999999999999999999999999998874
No 260
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=49.38 E-value=11 Score=35.62 Aligned_cols=118 Identities=14% Similarity=0.097 Sum_probs=76.5
Q ss_pred CCceeHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHhhhhCCCeEEEEeCC--ceEEEEccCCCCChhHHHHHHHhhcc
Q psy6552 114 GGLILLDELRTRLVKSRGKSLQHQDITNEDLLAAAKKLKIFGNGFSIIPIGQ--GQYLVQSIPGELSLDHSLVLQQVASK 191 (254)
Q Consensus 114 GGii~L~dl~~~~nr~Rg~~~~~~~IS~~Di~rA~~~L~~Lg~g~~l~~~~s--g~~vv~s~p~els~D~~~il~l~~~~ 191 (254)
--+|+..++...+... ..-.++++..+...|+.+|.=+ .|.. -.-+|-..|.++.+.-..++..-..
T Consensus 235 ~~~i~~~~~~~l~~~~-------~~~~~~~~~~~~~~L~~~G~il---~f~d~~l~d~vvL~p~Wl~~~v~~ii~~~~~- 303 (535)
T 3dpu_A 235 QRYLNRTEVEKICNDS-------GITDPGERKTLLGYLNNLGIVL---YFEALDLSEIYVLDPHWVTIGVYRIINSSKT- 303 (535)
T ss_dssp SSEECHHHHHHHHHHT-------TCCCHHHHHHHHHHHHHTTSSB---CCTTTCCSSSCEECHHHHHHHHHHHHHCTTS-
T ss_pred CCcccHHHHHHHHHHc-------CCCCHHHHHHHHHHHHHCcEEE---EcCCCCcCCcEEECcHHHHHHHHHHhCCcCC-
Confidence 3567777777666653 2447889999999999998433 2221 0112223454555433344433222
Q ss_pred CCCcccHHHHHHhcC------------------CCHHHHHHHHHHHHHcCcEEEeCCCCCcccceecccccCc
Q psy6552 192 NEAHISVSVLNNELN------------------WSTERAQHALDFMVQEGYAWIDTQSPQEHLYWFPSLFTEC 246 (254)
Q Consensus 192 ~~g~vt~~~l~~~l~------------------ws~~ra~~~L~~l~~~G~lwvD~q~~~e~~yw~p~lf~~~ 246 (254)
..|.++.++|..-+. .+.......|..|++-++++--+ ++.|.+|+++...
T Consensus 304 ~~G~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~lm~~f~l~~~~~----~~~~lvP~lL~~~ 372 (535)
T 3dpu_A 304 KNGHLNTSALGYILNEEQIRCDEYDPAKNNKFTYTLLEQRYLLDIMKQFELCYDEG----KGLFIIPSNLPTQ 372 (535)
T ss_dssp TTSEEEGGGHHHHHHTC-------------CCCCCHHHHHHHHHHHHHTTSCEECS----SSEEECGGGSCSC
T ss_pred CCcEEcHHHHHHHHhccccccccccccccccccCcHHHHHHHHHHHHHcCeEEEcC----CCcEEEeecCCCC
Confidence 379999999987643 34556666777899999999864 4789999999874
No 261
>1tzy_D Histone H4-VI; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1f66_B 1eqz_D 1hq3_D 1u35_B 2aro_D 2cv5_B* 2f8n_B 3nqu_B 3r45_B 3azg_B 3a6n_B 3an2_B 3av1_B 3av2_B 3ayw_B 3aze_B 3azf_B 3afa_B 3azh_B 3azk_B ...
Probab=49.01 E-value=34 Score=25.41 Aligned_cols=61 Identities=20% Similarity=0.161 Sum_probs=37.0
Q ss_pred HHHHHHHHcCCCcccCCCccccccccchhHHHHHHHHHHHhhhhhhhcCCceeHHHHHHHHHHhcCCCCCCCCCCHHHHH
Q psy6552 66 HFQEMCASIGVDPLASRKGFWSLLGMGDFYYELSVQIVEVCLATNYKNGGLILLDELRTRLVKSRGKSLQHQDITNEDLL 145 (254)
Q Consensus 66 ~f~~mc~~lGVdPl~s~kg~w~~lg~gdfy~eLavqive~c~~~r~~nGGii~L~dl~~~~nr~Rg~~~~~~~IS~~Di~ 145 (254)
....++.+.|+.-+. .+-|.+|+.-+-+++.. ++....-|+.-+++ ..|+++||.
T Consensus 34 ~I~Rlar~~G~~rIs-----------~~a~~~l~~vle~~~~~-------V~~dA~~~a~hakR-------ktIt~~DV~ 88 (103)
T 1tzy_D 34 AIRRLARRGGVKRIS-----------GLIYEETRGVLKVFLEN-------VIRDAVTYTEHAKR-------KTVTAMDVV 88 (103)
T ss_dssp HHHHHHHHTTCCEEC-----------TTHHHHHHHHHHHHHHH-------HHHHHHHHHHHTTC-------SEECHHHHH
T ss_pred HHHHHHHHcCccccC-----------HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHcCC-------CcCCHHHHH
Confidence 567788888885443 35666665544444443 22223333333332 479999999
Q ss_pred HHHHHh
Q psy6552 146 AAAKKL 151 (254)
Q Consensus 146 rA~~~L 151 (254)
-|++.+
T Consensus 89 ~Alr~~ 94 (103)
T 1tzy_D 89 YALKRQ 94 (103)
T ss_dssp HHHHHT
T ss_pred HHHHHc
Confidence 999976
No 262
>4g6q_A Putative uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 2.08A {Kribbella flavida}
Probab=48.85 E-value=23 Score=28.70 Aligned_cols=45 Identities=13% Similarity=0.185 Sum_probs=36.7
Q ss_pred HHHHHhhccCCCcccHHHHHHhcC-CCHHHHHHHHHHHHHcCcEEEeCC
Q psy6552 183 LVLQQVASKNEAHISVSVLNNELN-WSTERAQHALDFMVQEGYAWIDTQ 230 (254)
Q Consensus 183 ~il~l~~~~~~g~vt~~~l~~~l~-ws~~ra~~~L~~l~~~G~lwvD~q 230 (254)
.|+.+.. .|..|+.+|++.+| .+..-...+|..|.+.|++=+...
T Consensus 27 ~il~~L~---~~~~~~~~l~~~l~~~~~~~~s~Hl~~L~~aglv~~~~e 72 (182)
T 4g6q_A 27 RITQLLI---GRSLTTRELAELLPDVATTTLYRQVGILVKAGVLMVTAE 72 (182)
T ss_dssp HHHHHTT---TSCEEHHHHHHHCTTBCHHHHHHHHHHHHHHTSEEEEEE
T ss_pred HHHHHHH---hCCCCHHHHHHHhcCCCHHHHHHHHHHHHHCCCeEEEEe
Confidence 3444444 46799999999996 999999999999999999976543
No 263
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=48.59 E-value=43 Score=21.93 Aligned_cols=41 Identities=12% Similarity=0.135 Sum_probs=32.9
Q ss_pred CCChhHHHHHHHhhccCCCcccHHHHHHhcCCCHHHHHHHHHHHH
Q psy6552 176 ELSLDHSLVLQQVASKNEAHISVSVLNNELNWSTERAQHALDFMV 220 (254)
Q Consensus 176 els~D~~~il~l~~~~~~g~vt~~~l~~~l~ws~~ra~~~L~~l~ 220 (254)
.+++.+..|+.+.. .| .|..++++.+|+|+.-++..+..+.
T Consensus 11 ~L~~~e~~il~~~~---~g-~s~~eIA~~l~is~~tV~~~~~~~~ 51 (74)
T 1fse_A 11 LLTKREREVFELLV---QD-KTTKEIASELFISEKTVRNHISNAM 51 (74)
T ss_dssp CCCHHHHHHHHHHT---TT-CCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH---cC-CCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 48877888888753 33 5999999999999998888887753
No 264
>3o2p_E Cell division control protein 53; ligase, cell cycle; 2.23A {Saccharomyces cerevisiae} PDB: 3o6b_B
Probab=47.79 E-value=25 Score=25.69 Aligned_cols=36 Identities=19% Similarity=0.333 Sum_probs=29.6
Q ss_pred HHHhcCCCHHHHHHHHHHHHHcCcEEEeCCCCCccccee
Q psy6552 201 LNNELNWSTERAQHALDFMVQEGYAWIDTQSPQEHLYWF 239 (254)
Q Consensus 201 l~~~l~ws~~ra~~~L~~l~~~G~lwvD~q~~~e~~yw~ 239 (254)
|+..|.-++...+..++.|++.+.+-||+. . ..|-|
T Consensus 51 l~~rF~p~~~~IKk~IE~LIekeYleR~~~--~-~~y~Y 86 (88)
T 3o2p_E 51 SHQRFNAKVSMVKRAIDSLIQKGYLQRGDD--G-ESYAY 86 (88)
T ss_dssp HTTTCCCCHHHHHHHHHHHHHTTSEEECTT--S-SEEEE
T ss_pred HhccCCCCHHHHHHHHHHHHhhhHHhcCCC--C-CeEEe
Confidence 445688899999999999999999999976 3 55544
No 265
>3qyf_A Crispr-associated protein; helix-turn-helix, antiviral protein, viral resistance, nucle binding domain; 1.90A {Sulfolobus solfataricus}
Probab=47.65 E-value=7.7 Score=35.18 Aligned_cols=68 Identities=12% Similarity=0.032 Sum_probs=44.8
Q ss_pred ceEEEEccCCCCChhHHHHHHHhhccCCCcccHHHHHHhcCCCHHHHHHHHHHHHHcCcEEEe-CCCCCcccceecccc
Q psy6552 166 GQYLVQSIPGELSLDHSLVLQQVASKNEAHISVSVLNNELNWSTERAQHALDFMVQEGYAWID-TQSPQEHLYWFPSLF 243 (254)
Q Consensus 166 g~~vv~s~p~els~D~~~il~l~~~~~~g~vt~~~l~~~l~ws~~ra~~~L~~l~~~G~lwvD-~q~~~e~~yw~p~lf 243 (254)
....|-..|..++.+...+++-... .|+.++..+++.+|++ +.+|++.|++-++ +.. .+-.-|+--|+
T Consensus 198 ~Li~LP~lPi~ld~~~~~~lk~~~~--~g~~~~~~la~~lgi~-------v~~L~~~gli~~~~~~~-~~~~~w~~~~l 266 (324)
T 3qyf_A 198 DVVILPSPPITIRPKYLDWLIRFAI--SGYTLSEKRAEELGIP-------VRLLEAKMLVERKGEDA-YRLKDWVRKLL 266 (324)
T ss_dssp EEEEECCCCEEECHHHHHHHHHHHH--HCSEEEHHHHHHTTCC-------HHHHHHTTSEEEETTTE-EEECHHHHHHH
T ss_pred ceEEcCCCCcccCHHHHHHHHHHHh--cCCCCHHHHHHHhCCC-------HHHHHHCCCeEecCCCc-eehHHHHHHHH
Confidence 4444444554555555555544431 4789999999999999 4589999999999 543 44555654443
No 266
>2pjp_A Selenocysteine-specific elongation factor; SELB, protein-RNA complex, elongation factor, winged- helix, bulge, translation/RNA complex; 2.30A {Escherichia coli}
Probab=47.60 E-value=57 Score=24.36 Aligned_cols=61 Identities=15% Similarity=0.093 Sum_probs=41.9
Q ss_pred ChhHHHHHHHhhcc-CCCcccHHHHHHhcCCCHHHHHHHHHHHHHcCcEEEeCCCCCcccceeccc
Q psy6552 178 SLDHSLVLQQVASK-NEAHISVSVLNNELNWSTERAQHALDFMVQEGYAWIDTQSPQEHLYWFPSL 242 (254)
Q Consensus 178 s~D~~~il~l~~~~-~~g~vt~~~l~~~l~ws~~ra~~~L~~l~~~G~lwvD~q~~~e~~yw~p~l 242 (254)
+.++..+.+-+... .....++.+++..+|.+...+...|..|.+.|.+-.=. ++.|+-|..
T Consensus 2 ~~~~~~l~~~i~~~~~~~p~~~~~la~~~~~~~~~~~~~l~~l~~~G~l~~i~----~~~~~~~~~ 63 (121)
T 2pjp_A 2 SEEQQAIWQKAEPLFGDEPWWVRDLAKETGTDEQAMRLTLRQAAQQGIITAIV----KDRYYRNDR 63 (121)
T ss_dssp CHHHHHHHHHHGGGCSSSCEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEE----TTEEEEHHH
T ss_pred CHHHHHHHHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEEec----CCceECHHH
Confidence 34555444333221 12456999999999999999999999999999776542 345655543
No 267
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=47.58 E-value=43 Score=25.98 Aligned_cols=49 Identities=18% Similarity=0.238 Sum_probs=39.9
Q ss_pred hHHHHHHHhhccCCCcccHHHHHHhc-----CCCHHHHHHHHHHHHHcCcEEEeCC
Q psy6552 180 DHSLVLQQVASKNEAHISVSVLNNEL-----NWSTERAQHALDFMVQEGYAWIDTQ 230 (254)
Q Consensus 180 D~~~il~l~~~~~~g~vt~~~l~~~l-----~ws~~ra~~~L~~l~~~G~lwvD~q 230 (254)
--..||++.... . .+|+.+|.+.+ +++.+=.-..|+.|++.|++-.=+.
T Consensus 20 qR~~Il~~l~~~-~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv~~i~~ 73 (145)
T 3eyy_A 20 QRQLVLEAVDTL-E-HATPDDILGEVRKTASGINISTVYRTLELLEELGLVSHAHL 73 (145)
T ss_dssp HHHHHHHHHHHH-S-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTSEEEEEC
T ss_pred HHHHHHHHHHhc-C-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCcEEEEEe
Confidence 346778877754 4 89999998776 7899999999999999999987554
No 268
>1dtl_A Cardiac troponin C; helix-turn-helix, structural protein; HET: BEP; 2.15A {Gallus gallus} SCOP: a.39.1.5 PDB: 1j1d_A 1j1e_A 2jt3_A 2jt0_A 1la0_A 2jtz_A* 2jt8_A* 2kfx_T* 1wrk_A* 1wrl_A* 1ap4_A 1lxf_C* 1mxl_C 1spy_A 2krd_C* 2l1r_A* 3rv5_A* 2ctn_A 2kgb_C 2jxl_A ...
Probab=46.63 E-value=68 Score=23.58 Aligned_cols=43 Identities=19% Similarity=0.273 Sum_probs=22.3
Q ss_pred cCCceeHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHhhhhCCC
Q psy6552 113 NGGLILLDELRTRLVKSRGKSLQHQDITNEDLLAAAKKLKIFGNG 157 (254)
Q Consensus 113 nGGii~L~dl~~~~nr~Rg~~~~~~~IS~~Di~rA~~~L~~Lg~g 157 (254)
+.|.|+..|....+........ ..-+.+++..+.+.+..=|.|
T Consensus 68 ~~g~i~~~eF~~~~~~~~~~~~--~~~~~~~~~~~F~~~D~d~~G 110 (161)
T 1dtl_A 68 GSGTVDFDEFLVMMVRSMKDDS--KGKSEEELSDLFRMFDKNADG 110 (161)
T ss_dssp SSSSBCHHHHHHHHHHHHC-------CHHHHHHHHHHHHCTTCSS
T ss_pred CCCeEcHHHHHHHHHHHhcccc--cchHHHHHHHHHHHhCCCCCC
Confidence 3577777777776666432100 122455555666665555544
No 269
>4ds7_A Calmodulin, CAM; protein binding, metal binding, structura; 2.15A {Kluyveromyces lactis} PDB: 1lkj_A 2lhh_A 1f54_A 1f55_A
Probab=46.55 E-value=26 Score=25.46 Aligned_cols=14 Identities=21% Similarity=0.560 Sum_probs=10.1
Q ss_pred HHHHHHHHHcCCCc
Q psy6552 65 RHFQEMCASIGVDP 78 (254)
Q Consensus 65 ~~f~~mc~~lGVdP 78 (254)
.+|..++..+|..|
T Consensus 31 ~e~~~~l~~~~~~~ 44 (147)
T 4ds7_A 31 SELATVMRSLGLSP 44 (147)
T ss_dssp HHHHHHHHHTTCCC
T ss_pred HHHHHHHHHhCCCC
Confidence 46777778888764
No 270
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=46.53 E-value=52 Score=26.07 Aligned_cols=60 Identities=10% Similarity=0.106 Sum_probs=42.2
Q ss_pred hHHHHHHHhhccCCCcccHHHHHHhc-------CCCHHHHHHHHHHHHHcCcEEEeCCCCCcccceecc
Q psy6552 180 DHSLVLQQVASKNEAHISVSVLNNEL-------NWSTERAQHALDFMVQEGYAWIDTQSPQEHLYWFPS 241 (254)
Q Consensus 180 D~~~il~l~~~~~~g~vt~~~l~~~l-------~ws~~ra~~~L~~l~~~G~lwvD~q~~~e~~yw~p~ 241 (254)
--..||++.... .+.+|+.+|.+.+ +++.+=.-..|+.|++.|++-.=... +...+|-++
T Consensus 34 qR~~IL~~L~~~-~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv~~i~~~-~~~~~Y~~~ 100 (162)
T 4ets_A 34 QREVLLKTLYHS-DTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMVTSISFG-SAGKKYELA 100 (162)
T ss_dssp HHHHHHHHHHSC-CSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSEEECC------CCEEEC
T ss_pred HHHHHHHHHHhC-CCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCEEEEEeC-CCceEEEeC
Confidence 456788887754 6899999987643 68888899999999999999875442 233444433
No 271
>1alv_A Calpain, S-camld; calcium binding, calmodulin like, domain of cystein protease; 1.90A {Sus scrofa} SCOP: a.39.1.8 PDB: 1alw_A* 1nx0_A 1nx1_A 1nx2_A 1nx3_A* 1kfu_S 1kfx_S 3bow_B 1u5i_B 1df0_B 3df0_B 1aj5_A 1dvi_A 1np8_A
Probab=46.43 E-value=53 Score=24.95 Aligned_cols=34 Identities=15% Similarity=0.294 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHhhhhhhcCHHHHHHHHHHHHHc-CCCc
Q psy6552 39 LNTFRDKLESFASEYKNEIKKDAQFRRHFQEMCASI-GVDP 78 (254)
Q Consensus 39 l~~fk~~L~~FA~kh~~~I~~dp~fr~~f~~mc~~l-GVdP 78 (254)
+..++.....|. ...+.|. ..+|..++..+ |..|
T Consensus 3 ~~~l~~~F~~~D-d~~G~i~-----~~el~~~l~~~~g~~~ 37 (173)
T 1alv_A 3 VRQFRRLFAQLA-GDDMEVS-----ATELMNILNKVVTRHP 37 (173)
T ss_dssp HHHHHHHHHHHH-GGGTSBC-----HHHHHHHHHHHHHTCS
T ss_pred hhHHHHHHHHHh-CCCCCcC-----HHHHHHHHHHhhhccc
Confidence 344555555565 4444452 23667777776 7665
No 272
>1ggw_A Protein (CDC4P); light chain, cytokinesis, cell cycle, EF-hand; NMR {Schizosaccharomyces pombe} SCOP: a.39.1.5
Probab=46.33 E-value=79 Score=22.69 Aligned_cols=14 Identities=14% Similarity=0.427 Sum_probs=8.8
Q ss_pred HHHHHHHHHcCCCc
Q psy6552 65 RHFQEMCASIGVDP 78 (254)
Q Consensus 65 ~~f~~mc~~lGVdP 78 (254)
.+|..++.++|.+|
T Consensus 25 ~el~~~l~~~g~~~ 38 (140)
T 1ggw_A 25 TSIGDLLRACGQNP 38 (140)
T ss_dssp HHHHHHHHHTSCCC
T ss_pred HHHHHHHHHcCCCC
Confidence 35666666777654
No 273
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=46.16 E-value=57 Score=21.04 Aligned_cols=41 Identities=10% Similarity=-0.011 Sum_probs=31.9
Q ss_pred CCChhHHHHHHHhhccCCCcccHHHHHHhcCCCHHHHHHHHHHH
Q psy6552 176 ELSLDHSLVLQQVASKNEAHISVSVLNNELNWSTERAQHALDFM 219 (254)
Q Consensus 176 els~D~~~il~l~~~~~~g~vt~~~l~~~l~ws~~ra~~~L~~l 219 (254)
.+++.+..++.+.- ..+.|..++++.+|+|+.-++..+..+
T Consensus 15 ~L~~~~r~il~l~~---~~g~s~~eIA~~lgis~~tv~~~~~ra 55 (70)
T 2o8x_A 15 DLTTDQREALLLTQ---LLGLSYADAAAVCGCPVGTIRSRVARA 55 (70)
T ss_dssp SSCHHHHHHHHHHH---TSCCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHH---HcCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 36777777877765 235899999999999998888777664
No 274
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}
Probab=45.87 E-value=28 Score=27.39 Aligned_cols=35 Identities=14% Similarity=0.179 Sum_probs=32.0
Q ss_pred cccHHHHHHhcCCCHHHHHHHHHHHHHcCcEEEeC
Q psy6552 195 HISVSVLNNELNWSTERAQHALDFMVQEGYAWIDT 229 (254)
Q Consensus 195 ~vt~~~l~~~l~ws~~ra~~~L~~l~~~G~lwvD~ 229 (254)
.+|..+|++-+|.+++-....|..|.++|++-++.
T Consensus 146 ~~t~~~lA~~lg~sr~tvsR~l~~L~~~g~I~~~~ 180 (202)
T 2zcw_A 146 KATHDELAAAVGSVRETVTKVIGELAREGYIRSGY 180 (202)
T ss_dssp ECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEET
T ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEeCC
Confidence 37899999999999999999999999999998764
No 275
>3nr7_A DNA-binding protein H-NS; dimer, oligomerisation, DNA condensation; 3.70A {Salmonella enterica subsp} PDB: 1lr1_A 1ni8_A
Probab=45.57 E-value=50 Score=23.98 Aligned_cols=48 Identities=23% Similarity=0.377 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh---hhhhhcCHHHHHHHHHHHHHcCCCc
Q psy6552 31 QLEQLSQHLNTFRDKLESFASEY---KNEIKKDAQFRRHFQEMCASIGVDP 78 (254)
Q Consensus 31 ~~~~L~~ql~~fk~~L~~FA~kh---~~~I~~dp~fr~~f~~mc~~lGVdP 78 (254)
.+++|+..+.+|...+++=-..+ +.+.....+=..+|.+|...-||||
T Consensus 25 ~le~Lee~leKl~~VveERree~~~~~~~~~er~~Kl~~~~e~l~~~GI~~ 75 (86)
T 3nr7_A 25 TLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQYREMLIADGIDP 75 (86)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCH
Confidence 56778888888887776322222 1222222233478999999999998
No 276
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=45.57 E-value=28 Score=27.25 Aligned_cols=35 Identities=14% Similarity=0.216 Sum_probs=32.0
Q ss_pred cccHHHHHHhcCCCHHHHHHHHHHHHHcCcEEEeC
Q psy6552 195 HISVSVLNNELNWSTERAQHALDFMVQEGYAWIDT 229 (254)
Q Consensus 195 ~vt~~~l~~~l~ws~~ra~~~L~~l~~~G~lwvD~ 229 (254)
.+|..+|++-+|.+++-....|..|.++|++-++.
T Consensus 164 ~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~~~ 198 (207)
T 2oz6_A 164 KITRQEIGRIVGCSREMVGRVLKSLEEQGLVHVKG 198 (207)
T ss_dssp ECCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEET
T ss_pred ccCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEecC
Confidence 37999999999999999999999999999987763
No 277
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=45.53 E-value=18 Score=30.87 Aligned_cols=38 Identities=16% Similarity=0.130 Sum_probs=35.0
Q ss_pred CCcccHHHHHHhcCCCHHHHHHHHHHHHHcCcEEEeCC
Q psy6552 193 EAHISVSVLNNELNWSTERAQHALDFMVQEGYAWIDTQ 230 (254)
Q Consensus 193 ~g~vt~~~l~~~l~ws~~ra~~~L~~l~~~G~lwvD~q 230 (254)
.|..|+.+|++.+|.++.-...+|..|.+.|++.+...
T Consensus 176 ~~~~t~~~la~~~~l~~~~V~~~l~~L~~~~~v~~~~~ 213 (232)
T 2qlz_A 176 NGRATVEELSDRLNLKEREVREKISEMARFVPVKIIND 213 (232)
T ss_dssp SSEEEHHHHHHHHTCCHHHHHHHHHHHTTTSCEEEETT
T ss_pred cCCCCHHHHHHHhCcCHHHHHHHHHHHHhcCCeEEecC
Confidence 48899999999999999999999999999999987644
No 278
>3tdu_C Cullin-1, CUL-1; E2:E3, ligase-protein binding complex; 1.50A {Homo sapiens} PDB: 3tdz_C
Probab=45.39 E-value=26 Score=24.85 Aligned_cols=37 Identities=11% Similarity=0.233 Sum_probs=29.5
Q ss_pred HHHhcCCCHHHHHHHHHHHHHcCcEEEeCCCCCccccee
Q psy6552 201 LNNELNWSTERAQHALDFMVQEGYAWIDTQSPQEHLYWF 239 (254)
Q Consensus 201 l~~~l~ws~~ra~~~L~~l~~~G~lwvD~q~~~e~~yw~ 239 (254)
|+..|.-++...+..++.|++.+.+-||+.. ...|=|
T Consensus 39 l~~rF~p~~~~IKk~IE~LIereYl~R~~~~--~~~y~Y 75 (77)
T 3tdu_C 39 LSSRFKPRVPVIKKCIDILIEKEYLERVDGE--KDTYSY 75 (77)
T ss_dssp HTTTCCCCHHHHHHHHHHHHHTTSEEEETTE--EEEEEE
T ss_pred HhCcCCCCHHHHHHHHHHHHhhhHhhcCCCC--CceEEE
Confidence 4446788999999999999999999999873 344433
No 279
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=45.34 E-value=59 Score=21.27 Aligned_cols=46 Identities=11% Similarity=0.135 Sum_probs=34.9
Q ss_pred CCChhHHHHHHHhhcc-CCCcccHHHHHHhcCCCHHHHHHHHHHHHH
Q psy6552 176 ELSLDHSLVLQQVASK-NEAHISVSVLNNELNWSTERAQHALDFMVQ 221 (254)
Q Consensus 176 els~D~~~il~l~~~~-~~g~vt~~~l~~~l~ws~~ra~~~L~~l~~ 221 (254)
.|++.+..|+.+.--. +..+.|..++++.+|+|...++..+..+.+
T Consensus 5 ~L~~~er~il~l~~~l~~~~g~s~~eIA~~lgis~~tV~~~~~ra~~ 51 (68)
T 2p7v_B 5 GLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALR 51 (68)
T ss_dssp CCCHHHHHHHHHHTTTTSSSCCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHccCCCCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 3677777887776510 024699999999999999999998887644
No 280
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=45.19 E-value=54 Score=22.82 Aligned_cols=45 Identities=16% Similarity=0.116 Sum_probs=33.9
Q ss_pred CCChhHHHHHHHhhcc-CCCcccHHHHHHhcCCCHHHHHHHHHHHH
Q psy6552 176 ELSLDHSLVLQQVASK-NEAHISVSVLNNELNWSTERAQHALDFMV 220 (254)
Q Consensus 176 els~D~~~il~l~~~~-~~g~vt~~~l~~~l~ws~~ra~~~L~~l~ 220 (254)
.|++.+..|+.+.-.. +..+.|..++++.+|+|+..++..+..+.
T Consensus 18 ~L~~~er~vl~l~~~l~~~~~~s~~EIA~~lgis~~tV~~~~~ra~ 63 (87)
T 1tty_A 18 TLSPREAMVLRMRYGLLDGKPKTLEEVGQYFNVTRERIRQIEVKAL 63 (87)
T ss_dssp TSCHHHHHHHHHHHTTTTSSCCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHccCCCCCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3676777787776510 11469999999999999999998887653
No 281
>3i5g_B Myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_B 3i5h_B 3i5i_B
Probab=45.14 E-value=20 Score=27.68 Aligned_cols=37 Identities=14% Similarity=0.312 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHhhhhhhcCHHHHHHHHHHHHHcCCCccc
Q psy6552 39 LNTFRDKLESFASEYKNEIKKDAQFRRHFQEMCASIGVDPLA 80 (254)
Q Consensus 39 l~~fk~~L~~FA~kh~~~I~~dp~fr~~f~~mc~~lGVdPl~ 80 (254)
+..+++....|=....+.|.. .+|..++.++|..|..
T Consensus 15 i~elk~~F~~~D~d~dG~I~~-----~El~~~l~~lg~~~~~ 51 (153)
T 3i5g_B 15 MQELKEAFTMIDQDRDGFIGM-----EDLKDMFSSLGRVPPD 51 (153)
T ss_dssp HHHHHHHHHHHCCSTTSCCCH-----HHHHHHHHHTTSCCCH
T ss_pred HHHHHHHHHHHCCCCCCeEcH-----HHHHHHHHHcCCCccH
Confidence 334455444454444455532 3677888889988763
No 282
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...
Probab=44.98 E-value=30 Score=27.19 Aligned_cols=36 Identities=11% Similarity=0.141 Sum_probs=32.8
Q ss_pred cccHHHHHHhcCCCHHHHHHHHHHHHHcCcEEEeCC
Q psy6552 195 HISVSVLNNELNWSTERAQHALDFMVQEGYAWIDTQ 230 (254)
Q Consensus 195 ~vt~~~l~~~l~ws~~ra~~~L~~l~~~G~lwvD~q 230 (254)
.+|..+|++-+|.+++-....|..|.++|++-++..
T Consensus 167 ~~t~~~iA~~lg~sr~tvsR~l~~L~~~g~I~~~~~ 202 (210)
T 3ryp_A 167 KITRQEIGQIVGCSRETVGRILKMLEDQNLISAHGK 202 (210)
T ss_dssp ECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETT
T ss_pred ccCHHHHHHHhCCcHHHHHHHHHHHHHCCcEEeCCC
Confidence 478999999999999999999999999999988743
No 283
>3ic7_A Putative transcriptional regulator; helix-turn-helix, structural genomics, PSI-2, protein struct initiative; 2.82A {Bacteroides thetaiotaomicron}
Probab=44.84 E-value=3.5 Score=31.69 Aligned_cols=36 Identities=8% Similarity=0.169 Sum_probs=31.5
Q ss_pred cc-cHHHHHHhcCCCHHHHHHHHHHHHHcCcEEEeCC
Q psy6552 195 HI-SVSVLNNELNWSTERAQHALDFMVQEGYAWIDTQ 230 (254)
Q Consensus 195 ~v-t~~~l~~~l~ws~~ra~~~L~~l~~~G~lwvD~q 230 (254)
.+ |..+|++.||.|..-++++|..|+.+|++-+-..
T Consensus 34 ~lPs~~~La~~~~vSr~tvr~Al~~L~~~G~i~~~~~ 70 (126)
T 3ic7_A 34 RIPSVREYASIVEVNANTVMRSYEYLQSQEVIYNKRG 70 (126)
T ss_dssp EECCTTTTTTCC-CCSGGGHHHHHHHHTTTSEEEETT
T ss_pred cCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEEcC
Confidence 45 8899999999999999999999999999877644
No 284
>2pi2_A Replication protein A 32 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxan replication, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2z6k_A 1dpu_A 1z1d_A
Probab=44.44 E-value=4.7 Score=35.21 Aligned_cols=53 Identities=25% Similarity=0.445 Sum_probs=0.0
Q ss_pred CChhHHHHHHHhhcc-CCCcccHHHHHHhc-CCCHHHHHHHHHHHHHcCcEE--EeC
Q psy6552 177 LSLDHSLVLQQVASK-NEAHISVSVLNNEL-NWSTERAQHALDFMVQEGYAW--IDT 229 (254)
Q Consensus 177 ls~D~~~il~l~~~~-~~g~vt~~~l~~~l-~ws~~ra~~~L~~l~~~G~lw--vD~ 229 (254)
++..+..|++++... ...++++.+|++.+ +.+....+++|+.|+.+|.+. +|+
T Consensus 205 ~~~~~~~Vl~~i~~~~~~~Gi~~~~I~~~l~~~~~~~v~~al~~L~~eG~IYsTiDd 261 (270)
T 2pi2_A 205 LTVAQNQVLNLIKACPRPEGLNFQDLKNQLKHMSVSSIKQAVDFLSNEGHIYSTVDD 261 (270)
T ss_dssp ---------------------------------------------------------
T ss_pred CCHHHHHHHHHHHhCCCccCCCHHHHHHHhcCCCHHHHHHHHHHHHhCCEEeccccc
Confidence 555677888887643 12589999999999 799999999999999999985 454
No 285
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=44.31 E-value=1.5e+02 Score=25.26 Aligned_cols=73 Identities=12% Similarity=0.162 Sum_probs=51.3
Q ss_pred CCCCHHHHHHHHHHhhhhCCCeEEEEeCCceEEEEccCCCCChhHHHH-HHHhhccCCCcccHHHHHHhcCCCHHHHHHH
Q psy6552 137 QDITNEDLLAAAKKLKIFGNGFSIIPIGQGQYLVQSIPGELSLDHSLV-LQQVASKNEAHISVSVLNNELNWSTERAQHA 215 (254)
Q Consensus 137 ~~IS~~Di~rA~~~L~~Lg~g~~l~~~~sg~~vv~s~p~els~D~~~i-l~l~~~~~~g~vt~~~l~~~l~ws~~ra~~~ 215 (254)
..|+.+|+..++..+..-. . .++.-...+ ..++.. ..+.++...+++.+|++..-....
T Consensus 240 ~~i~~~~~~~~~~~~~~~~-----------------~--~l~~~e~~~l~~l~~~-~~~~~~~~~~a~~lg~~~~tl~~~ 299 (338)
T 3pfi_A 240 EIITEKRANEALNSLGVNE-----------------L--GFDAMDLRYLELLTAA-KQKPIGLASIAAALSEDENTIEDV 299 (338)
T ss_dssp SEECHHHHHHHHHHHTCCT-----------------T--CCCHHHHHHHHHHHHS-CSCCBCHHHHHHHTTCCHHHHHHT
T ss_pred CccCHHHHHHHHHHhCCcc-----------------c--CCCHHHHHHHHHHHHh-cCCCchHHHHHHHhCCCHHHHHHH
Confidence 4689999988887643100 0 133222333 344553 356799999999999999999999
Q ss_pred HH-HHHHcCcEEEeC
Q psy6552 216 LD-FMVQEGYAWIDT 229 (254)
Q Consensus 216 L~-~l~~~G~lwvD~ 229 (254)
|+ .+++.|++-...
T Consensus 300 l~~~l~~~gli~~~~ 314 (338)
T 3pfi_A 300 IEPYLLANGYIERTA 314 (338)
T ss_dssp THHHHHHTTSEEEET
T ss_pred HhHHHHHcCceecCC
Confidence 99 799999987654
No 286
>3qph_A TRMB, A global transcription regulator; transcriptional regulator; HET: SUC; 2.99A {Pyrococcus furiosus}
Probab=44.11 E-value=1.9 Score=39.13 Aligned_cols=45 Identities=4% Similarity=-0.005 Sum_probs=38.6
Q ss_pred CCcccHHHHHHhcCCCHHHHHHHHHHHHHcCcEEEeCCCCCcccceec
Q psy6552 193 EAHISVSVLNNELNWSTERAQHALDFMVQEGYAWIDTQSPQEHLYWFP 240 (254)
Q Consensus 193 ~g~vt~~~l~~~l~ws~~ra~~~L~~l~~~G~lwvD~q~~~e~~yw~p 240 (254)
.|..|+.+|++.+|++..++..+|+.|++.|++-+... .+.+|.|
T Consensus 30 ~g~~t~~eia~~~gv~~~~Vy~~L~~L~~~GlV~~~~g---~p~~y~a 74 (342)
T 3qph_A 30 YGPSTAKEISTKSGIPYNRVYDTISSLKLRGFVTEIEG---TPKVYAA 74 (342)
T ss_dssp HHHHHHSCCSSSTTSSSCSCCHHHHHHHHHTSEEEECC---TTCEEEE
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEcC---ceeEEEE
Confidence 47899999999999999999999999999999998854 3445554
No 287
>1jhf_A LEXA repressor; LEXA SOS repressor, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.2 b.87.1.1 PDB: 1jhh_A 3jso_A* 3jsp_A* 3k3r_E* 1jhc_A 1jhe_A 1lea_A 1leb_A
Probab=43.75 E-value=30 Score=27.93 Aligned_cols=55 Identities=13% Similarity=0.196 Sum_probs=40.3
Q ss_pred CCChhHHHHHHHhhcc--CCCc-ccHHHHHHhcCCC-HHHHHHHHHHHHHcCcEEEeCC
Q psy6552 176 ELSLDHSLVLQQVASK--NEAH-ISVSVLNNELNWS-TERAQHALDFMVQEGYAWIDTQ 230 (254)
Q Consensus 176 els~D~~~il~l~~~~--~~g~-vt~~~l~~~l~ws-~~ra~~~L~~l~~~G~lwvD~q 230 (254)
+++..|..+++.+... ..|+ .|..+|++.+|++ ..-....+..+.+.|.+.++..
T Consensus 3 ~lt~~q~~i~~~i~~~~~~~g~~ps~~elA~~lgiss~~tv~~~~~~l~~~~~l~~~~g 61 (202)
T 1jhf_A 3 ALTARQQEVFDLIRDHISQTGMPPTRAEIAQRLGFRSPNAAEEHLKALARKGVIEIVSG 61 (202)
T ss_dssp CCCHHHHHHHHHHHHHHHHHSSCCCHHHHHHHTTCSSHHHHHHHHHHHHHTTSEEECSS
T ss_pred ccCHHHHHHHHHHHHHHHHhCCCccHHHHHHHhCCCChHHHHHHHHHHHHCCCceeCCC
Confidence 3677777776554321 1243 2999999999998 8878888888888998888743
No 288
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=43.67 E-value=41 Score=29.15 Aligned_cols=80 Identities=16% Similarity=0.219 Sum_probs=50.1
Q ss_pred CCCCHHHHHHHHHHhhhhCCCeEEEEeCCceEEEEccCCCCChhHHHHHHHhhcc---CCC-cccHHHHHH-------hc
Q psy6552 137 QDITNEDLLAAAKKLKIFGNGFSIIPIGQGQYLVQSIPGELSLDHSLVLQQVASK---NEA-HISVSVLNN-------EL 205 (254)
Q Consensus 137 ~~IS~~Di~rA~~~L~~Lg~g~~l~~~~sg~~vv~s~p~els~D~~~il~l~~~~---~~g-~vt~~~l~~-------~l 205 (254)
..|+++|+.+|+..... ..-..++.+ ++.++..+|..+... ..| .++..++.+ .+
T Consensus 260 ~~i~~~~v~~~~~~~~~----------~~~~~~l~~----l~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 325 (389)
T 1fnn_A 260 KHIAPEDVRKSSKEVLF----------GISEEVLIG----LPLHEKLFLLAIVRSLKISHTPYITFGDAEESYKIVCEEY 325 (389)
T ss_dssp SSCCHHHHHHHHHHHSC----------CCCHHHHHH----SCHHHHHHHHHHHHHHHHHCSSCEEHHHHHHHHHHHHHHT
T ss_pred CCcCHHHHHHHHHHHhh----------hhHHHHHHc----CCHHHHHHHHHHHHHHhhccCCCccHHHHHHHHHHHHHHc
Confidence 57999999999887541 000111222 455555554432210 023 677777644 33
Q ss_pred C---CCHHHHHHHHHHHHHcCcEEEeCC
Q psy6552 206 N---WSTERAQHALDFMVQEGYAWIDTQ 230 (254)
Q Consensus 206 ~---ws~~ra~~~L~~l~~~G~lwvD~q 230 (254)
| .+......+|..|+..|++.....
T Consensus 326 ~~~~~~~~~~~~~l~~L~~~gli~~~~~ 353 (389)
T 1fnn_A 326 GERPRVHSQLWSYLNDLREKGIVETRQN 353 (389)
T ss_dssp TCCCCCHHHHHHHHHHHHHTTSSEEEEC
T ss_pred CCCCCCHHHHHHHHHHHHhCCCeEEeee
Confidence 3 367889999999999999999764
No 289
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=43.48 E-value=57 Score=22.81 Aligned_cols=40 Identities=20% Similarity=0.274 Sum_probs=30.7
Q ss_pred CChhHHHHHHHhhccCCCcccHHHHHHhcCCCHHHHHHHHHHH
Q psy6552 177 LSLDHSLVLQQVASKNEAHISVSVLNNELNWSTERAQHALDFM 219 (254)
Q Consensus 177 ls~D~~~il~l~~~~~~g~vt~~~l~~~l~ws~~ra~~~L~~l 219 (254)
|+..+..|+.+.- ..+.|..++++.+|+|..-++..+..+
T Consensus 38 L~~~~r~vl~l~~---~~g~s~~eIA~~lgis~~tV~~~l~ra 77 (92)
T 3hug_A 38 LSAEHRAVIQRSY---YRGWSTAQIATDLGIAEGTVKSRLHYA 77 (92)
T ss_dssp SCHHHHHHHHHHH---TSCCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH---HcCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 6767777877755 235899999999999988777766553
No 290
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2
Probab=43.10 E-value=36 Score=27.33 Aligned_cols=35 Identities=23% Similarity=0.158 Sum_probs=32.5
Q ss_pred cccHHHHHHhcCCCHHHHHHHHHHHHHcCcEEEeC
Q psy6552 195 HISVSVLNNELNWSTERAQHALDFMVQEGYAWIDT 229 (254)
Q Consensus 195 ~vt~~~l~~~l~ws~~ra~~~L~~l~~~G~lwvD~ 229 (254)
.+|..+|++-+|.+++-....|..|.++|++-++.
T Consensus 180 ~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~~~ 214 (232)
T 2gau_A 180 YLSREELATLSNMTVSNAIRTLSTFVSERMLALDG 214 (232)
T ss_dssp CCCHHHHHHHTTSCHHHHHHHHHHHHHTTSEEEET
T ss_pred ccCHHHHHHHhCCCHHHHHHHHHHHHHCCCEeeCC
Confidence 48999999999999999999999999999997764
No 291
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A
Probab=42.99 E-value=32 Score=26.95 Aligned_cols=34 Identities=15% Similarity=0.084 Sum_probs=31.2
Q ss_pred ccHHHHHHhcCCCHHHHHHHHHHHHHcCcEEEeC
Q psy6552 196 ISVSVLNNELNWSTERAQHALDFMVQEGYAWIDT 229 (254)
Q Consensus 196 vt~~~l~~~l~ws~~ra~~~L~~l~~~G~lwvD~ 229 (254)
+|..+|++-+|.+++-....|..|.++|++-++.
T Consensus 140 ~t~~~lA~~lg~sr~tvsR~l~~L~~~g~I~~~~ 173 (195)
T 3b02_A 140 VSHEEIADATASIRESVSKVLADLRREGLIATAY 173 (195)
T ss_dssp CCHHHHHHTTTSCHHHHHHHHHHHHHHTSEEEET
T ss_pred CCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEecC
Confidence 7888999999999999999999999999987764
No 292
>2bl0_C Myosin regulatory light chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum}
Probab=42.70 E-value=63 Score=23.26 Aligned_cols=14 Identities=21% Similarity=0.297 Sum_probs=8.8
Q ss_pred HHHHHHHHHcCCCc
Q psy6552 65 RHFQEMCASIGVDP 78 (254)
Q Consensus 65 ~~f~~mc~~lGVdP 78 (254)
.+|..++..+|..|
T Consensus 26 ~el~~~l~~~~~~~ 39 (142)
T 2bl0_C 26 EGLQTVLKQFGVRV 39 (142)
T ss_dssp HHHHHHHHHHTCCC
T ss_pred HHHHHHHHHhCCCC
Confidence 35666677777654
No 293
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV}
Probab=42.67 E-value=33 Score=27.34 Aligned_cols=34 Identities=21% Similarity=0.173 Sum_probs=32.1
Q ss_pred ccHHHHHHhcCCCHHHHHHHHHHHHHcCcEEEeC
Q psy6552 196 ISVSVLNNELNWSTERAQHALDFMVQEGYAWIDT 229 (254)
Q Consensus 196 vt~~~l~~~l~ws~~ra~~~L~~l~~~G~lwvD~ 229 (254)
+|..+|++-+|.+++-....|..|.++|++-++.
T Consensus 188 lt~~~lA~~lg~sr~tvsR~l~~L~~~g~I~~~~ 221 (230)
T 3iwz_A 188 VSRQELARLVGCSREMAGRVLKKLQADGLLHARG 221 (230)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEET
T ss_pred CCHHHHHHHhCCcHHHHHHHHHHHHHCCCEEECC
Confidence 7899999999999999999999999999998874
No 294
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=42.58 E-value=34 Score=27.08 Aligned_cols=35 Identities=20% Similarity=0.284 Sum_probs=32.5
Q ss_pred cccHHHHHHhcCCCHHHHHHHHHHHHHcCcEEEeC
Q psy6552 195 HISVSVLNNELNWSTERAQHALDFMVQEGYAWIDT 229 (254)
Q Consensus 195 ~vt~~~l~~~l~ws~~ra~~~L~~l~~~G~lwvD~ 229 (254)
.+|..+|++-+|.+++-....|..|.++|++-++.
T Consensus 169 ~~t~~~lA~~lg~sr~tvsR~l~~L~~~g~I~~~~ 203 (220)
T 3dv8_A 169 KITHETIANHLGSHREVITRMLRYFQVEGLVKLSR 203 (220)
T ss_dssp CCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEET
T ss_pred cCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEeCC
Confidence 68999999999999999999999999999997763
No 295
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=42.41 E-value=54 Score=23.02 Aligned_cols=45 Identities=9% Similarity=0.144 Sum_probs=37.7
Q ss_pred HHHHHHhhhhhhhc-CCceeHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHhhhhC
Q psy6552 100 VQIVEVCLATNYKN-GGLILLDELRTRLVKSRGKSLQHQDITNEDLLAAAKKLKIFG 155 (254)
Q Consensus 100 vqive~c~~~r~~n-GGii~L~dl~~~~nr~Rg~~~~~~~IS~~Di~rA~~~L~~Lg 155 (254)
.+|.+++......+ ||-+++.|+...++ ||+.=|.+-++.|+.-|
T Consensus 7 ~~IL~~I~~~i~~~~g~~psv~EIa~~lg-----------vS~~TVrr~L~~Le~kG 52 (77)
T 2jt1_A 7 TKIISIVQERQNMDDGAPVKTRDIADAAG-----------LSIYQVRLYLEQLHDVG 52 (77)
T ss_dssp HHHHHHHHHHHHHHTTSCEEHHHHHHHHT-----------CCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhhccCCCcCHHHHHHHHC-----------CCHHHHHHHHHHHHHCC
Confidence 47888888876665 99999999998864 58988999999999877
No 296
>2l02_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=42.26 E-value=51 Score=23.85 Aligned_cols=55 Identities=18% Similarity=0.268 Sum_probs=44.5
Q ss_pred HHHHHhhccCCCcccHHHHHHhcCCCHHHHHHHHHHHHHcCcEEEeCCCCCcccceecc
Q psy6552 183 LVLQQVASKNEAHISVSVLNNELNWSTERAQHALDFMVQEGYAWIDTQSPQEHLYWFPS 241 (254)
Q Consensus 183 ~il~l~~~~~~g~vt~~~l~~~l~ws~~ra~~~L~~l~~~G~lwvD~q~~~e~~yw~p~ 241 (254)
.|-.+... .|..|..+|++..|.+..-..-+|-.|.++|.+.++.. .+..|...+
T Consensus 12 ~VW~~L~~--~~~~s~~el~k~t~l~d~el~lAIGWLaREdKI~~~~~--~~~l~v~L~ 66 (82)
T 2l02_A 12 KVWHALNE--ADGISIPELARKVNLSVESTALAVGWLARENKVVIERK--NGLIEIYNE 66 (82)
T ss_dssp HHHHHHHH--CCSBCHHHHHHHHTCCHHHHHHHHHHHHTTTSEEEEEE--TTEEEEEEG
T ss_pred HHHHHHhc--cCCCCHHHHHHHhCCCHHHHHHHHHHHhccCceeEEee--CCEEEEEEc
Confidence 34555552 47899999999999999999999999999999999987 345555544
No 297
>1cf7_A Protein (transcription factor E2F-4); E2F, winged-helix, DNA-binding domain, cell cycle, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: a.4.5.17
Probab=42.20 E-value=47 Score=23.40 Aligned_cols=47 Identities=6% Similarity=0.092 Sum_probs=39.4
Q ss_pred HHHHHhhccCCCcccHHHHHHhcCC-CHHHHHHHHHHHHHcCcEEEeC
Q psy6552 183 LVLQQVASKNEAHISVSVLNNELNW-STERAQHALDFMVQEGYAWIDT 229 (254)
Q Consensus 183 ~il~l~~~~~~g~vt~~~l~~~l~w-s~~ra~~~L~~l~~~G~lwvD~ 229 (254)
..++++.....|-++..++++.++. ..-|.-..++-|+.-|++=.-.
T Consensus 18 kFi~l~~~~~~~~i~l~~aa~~L~v~~kRRiYDI~NVLe~igli~K~~ 65 (76)
T 1cf7_A 18 KFVSLLQEAKDGVLDLKLAADTLAVRQKRRIYDITNVLEGIGLIEKKS 65 (76)
T ss_dssp HHHHHHHHSSTTEEEHHHHHHHTTTCCTHHHHHHHHHHHHHTSEEEEE
T ss_pred HHHHHHHhCCCCcCcHHHHHHHhCCccceehhhHHHHHhHhcceeecC
Confidence 4466666544688999999999999 9999999999999999987653
No 298
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=42.00 E-value=34 Score=26.94 Aligned_cols=35 Identities=20% Similarity=0.201 Sum_probs=32.5
Q ss_pred cccHHHHHHhcCCCHHHHHHHHHHHHHcCcEEEeC
Q psy6552 195 HISVSVLNNELNWSTERAQHALDFMVQEGYAWIDT 229 (254)
Q Consensus 195 ~vt~~~l~~~l~ws~~ra~~~L~~l~~~G~lwvD~ 229 (254)
.+|..+|++-+|.+++-....|..|.++|++-++.
T Consensus 163 ~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~~~ 197 (216)
T 4ev0_A 163 QIRHHELAALAGTSRETVSRVLHALAEEGVVRLGP 197 (216)
T ss_dssp ECCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEET
T ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEecC
Confidence 47999999999999999999999999999998764
No 299
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=41.95 E-value=31 Score=27.65 Aligned_cols=35 Identities=9% Similarity=0.032 Sum_probs=32.5
Q ss_pred cccHHHHHHhcCCCHHHHHHHHHHHHHcCcEEEeC
Q psy6552 195 HISVSVLNNELNWSTERAQHALDFMVQEGYAWIDT 229 (254)
Q Consensus 195 ~vt~~~l~~~l~ws~~ra~~~L~~l~~~G~lwvD~ 229 (254)
.+|..+|++-+|.+++-....|..|.++|++-++.
T Consensus 175 ~~t~~~iA~~lg~sr~tvsR~l~~L~~~g~I~~~~ 209 (231)
T 3e97_A 175 PLGTQDIMARTSSSRETVSRVLKRLEAHNILEVSP 209 (231)
T ss_dssp CCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECS
T ss_pred CCCHHHHHHHhCCcHHHHHHHHHHHHHCCcEEecC
Confidence 47999999999999999999999999999998764
No 300
>3eyi_A Z-DNA-binding protein 1; alternative splicing, DNA-binding, polymorphism, DNA binding protein/Z-DNA complex, DNA binding protein/DNA complex; 1.45A {Homo sapiens} PDB: 2l4m_A
Probab=41.94 E-value=43 Score=23.59 Aligned_cols=54 Identities=17% Similarity=0.147 Sum_probs=43.6
Q ss_pred CCChh-HHHHHHHhhccCCCcccHHHHHHhcCCCHHH-HHHHHHHHHHcCcEEEeCCC
Q psy6552 176 ELSLD-HSLVLQQVASKNEAHISVSVLNNELNWSTER-AQHALDFMVQEGYAWIDTQS 231 (254)
Q Consensus 176 els~D-~~~il~l~~~~~~g~vt~~~l~~~l~ws~~r-a~~~L~~l~~~G~lwvD~q~ 231 (254)
++|.- +..|+.+.+. .|.-++-.|++++|...+- .--.|-.|...|+|=.|+..
T Consensus 6 qls~~~ee~I~~fL~~--~Gp~~AL~IAK~LGlktAK~VNp~LY~m~~~~lL~~Dek~ 61 (72)
T 3eyi_A 6 QFSQQREEDIYRFLKD--NGPQRALVIAQALGMRTAKDVNRDLYRMKSRHLLDMDEQS 61 (72)
T ss_dssp CCSSHHHHHHHHHHHH--HCSEEHHHHHHHTTCCSGGGTHHHHHHHHHTTSEEECTTT
T ss_pred hhhhhhHHHHHHHHHH--cCCchHHHHHHHhCcchhhhcCHHHHHHHHccCcCCCCCC
Confidence 46644 5679999984 4899999999999997754 55668889999999778875
No 301
>1qv0_A Obelin, OBL; photoprotein, bioluminescence, atomic resolution, Ca binding, EF-hand, luminescent protein; HET: CZH; 1.10A {Obelia longissima} SCOP: a.39.1.5 PDB: 1qv1_A* 1sl9_A* 1el4_A* 2f8p_A* 1sl7_A 1jf2_A* 1s36_A* 1jf0_A* 3kpx_A*
Probab=41.36 E-value=59 Score=24.92 Aligned_cols=13 Identities=38% Similarity=0.386 Sum_probs=6.2
Q ss_pred CceeHHHHHHHHH
Q psy6552 115 GLILLDELRTRLV 127 (254)
Q Consensus 115 Gii~L~dl~~~~n 127 (254)
|.|+..|+...+.
T Consensus 128 G~I~~~El~~~l~ 140 (195)
T 1qv0_A 128 GTITLDEWKAYGK 140 (195)
T ss_dssp CEECHHHHHHHHH
T ss_pred CcCcHHHHHHHHH
Confidence 4455554444443
No 302
>2pju_A Propionate catabolism operon regulatory protein; structural genomics, PRPR, transcriptional regulation, PSI- 2, protein structure initiative; 2.10A {Escherichia coli} SCOP: c.92.3.1
Probab=41.03 E-value=1.3e+02 Score=25.37 Aligned_cols=82 Identities=13% Similarity=0.072 Sum_probs=50.8
Q ss_pred CCCHHHHHHHHHHhhhhCCCeEEEEeCC---c---------eEEEEccCCCCCh-hHH-HHHHHhhcc---CCCcccHHH
Q psy6552 138 DITNEDLLAAAKKLKIFGNGFSIIPIGQ---G---------QYLVQSIPGELSL-DHS-LVLQQVASK---NEAHISVSV 200 (254)
Q Consensus 138 ~IS~~Di~rA~~~L~~Lg~g~~l~~~~s---g---------~~vv~s~p~els~-D~~-~il~l~~~~---~~g~vt~~~ 200 (254)
.+|.-||++|++..+..+..+-++.|++ + ..+.+-.. .+. |-. .+.++.+.. --|...+-+
T Consensus 89 ~vs~~Dil~aL~~a~~~~~kIavVg~~~~~~~~~~i~~ll~~~i~~~~~--~~~ee~~~~i~~l~~~G~~vVVG~~~~~~ 166 (225)
T 2pju_A 89 KPSGYDVLQFLAKAGKLTSSIGVVTYQETIPALVAFQKTFNLRLDQRSY--ITEEDARGQINELKANGTEAVVGAGLITD 166 (225)
T ss_dssp CCCHHHHHHHHHHTTCTTSCEEEEEESSCCHHHHHHHHHHTCCEEEEEE--SSHHHHHHHHHHHHHTTCCEEEESHHHHH
T ss_pred cCCHHHHHHHHHHHHhhCCcEEEEeCchhhhHHHHHHHHhCCceEEEEe--CCHHHHHHHHHHHHHCCCCEEECCHHHHH
Confidence 6999999999999999999999999973 1 11111111 122 223 333443311 025677788
Q ss_pred HHHhcCC------CHHHHHHHHHHHHH
Q psy6552 201 LNNELNW------STERAQHALDFMVQ 221 (254)
Q Consensus 201 l~~~l~w------s~~ra~~~L~~l~~ 221 (254)
+++++|. +.+=.+.+|+++.+
T Consensus 167 ~A~~~Gl~~vlI~s~eSI~~Ai~eA~~ 193 (225)
T 2pju_A 167 LAEEAGMTGIFIYSAATVRQAFSDALD 193 (225)
T ss_dssp HHHHTTSEEEESSCHHHHHHHHHHHHH
T ss_pred HHHHcCCcEEEECCHHHHHHHHHHHHH
Confidence 8888887 45555566666544
No 303
>2k6x_A Sigma-A, RNA polymerase sigma factor RPOD; DNA-binding, transcription, transcription regulation; NMR {Thermotoga maritima}
Probab=41.00 E-value=35 Score=23.50 Aligned_cols=46 Identities=7% Similarity=0.192 Sum_probs=36.9
Q ss_pred HHHHhhccCCCcccHHHHHHhcC-----CCHHHHHHHHHHHHHcCcEEEeCCC
Q psy6552 184 VLQQVASKNEAHISVSVLNNELN-----WSTERAQHALDFMVQEGYAWIDTQS 231 (254)
Q Consensus 184 il~l~~~~~~g~vt~~~l~~~l~-----ws~~ra~~~L~~l~~~G~lwvD~q~ 231 (254)
+++.+. ..|++|..++.+.+. .++......+..+.+.|+-.+|+.+
T Consensus 14 Li~~gK--~~G~lTy~EI~d~l~~~~~~ld~e~id~i~~~L~~~gI~Vvd~~~ 64 (72)
T 2k6x_A 14 LISLGK--KKGYITYEDIDKAFPPDFEGFDTNLIERIHEELEKHGINIVENEP 64 (72)
T ss_dssp HHHHHH--HHSSCBHHHHHHHCSCSCSSCCHHHHHHHHHHHHHTCCCCBCCSC
T ss_pred HHHHHh--HcCCccHHHHHHhCccccccCCHHHHHHHHHHHHHCCCccccCCc
Confidence 344555 358999999998874 7999999999999999988887653
No 304
>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*
Probab=40.57 E-value=26 Score=31.16 Aligned_cols=37 Identities=11% Similarity=0.008 Sum_probs=34.4
Q ss_pred CCcccHHHHHHhcCCCHHHHHHHHHHHHHcCcEEEeC
Q psy6552 193 EAHISVSVLNNELNWSTERAQHALDFMVQEGYAWIDT 229 (254)
Q Consensus 193 ~g~vt~~~l~~~l~ws~~ra~~~L~~l~~~G~lwvD~ 229 (254)
.|.+|+++|++.+|.++......|+.|...|++-.++
T Consensus 69 ~g~~t~~eLA~~~g~~~~~l~rlLr~L~~~g~l~~~~ 105 (369)
T 3gwz_A 69 EGPRTATALAEATGAHEQTLRRLLRLLATVGVFDDLG 105 (369)
T ss_dssp TSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSSEECS
T ss_pred CCCCCHHHHHHHHCcCHHHHHHHHHHHHhCCCEEEeC
Confidence 4689999999999999999999999999999998864
No 305
>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}
Probab=40.35 E-value=37 Score=29.73 Aligned_cols=35 Identities=6% Similarity=0.042 Sum_probs=33.2
Q ss_pred CCcccHHHHHHhcCCCHHHHHHHHHHHHHcCcEEE
Q psy6552 193 EAHISVSVLNNELNWSTERAQHALDFMVQEGYAWI 227 (254)
Q Consensus 193 ~g~vt~~~l~~~l~ws~~ra~~~L~~l~~~G~lwv 227 (254)
.|.+|+.+|++.+|+++......|+.|...|++-.
T Consensus 53 ~g~~t~~elA~~~g~~~~~l~rlLr~l~~~g~l~~ 87 (348)
T 3lst_A 53 DGPRTPAELAAATGTDADALRRVLRLLAVRDVVRE 87 (348)
T ss_dssp TSCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred CCCCCHHHHHHHhCcCHHHHHHHHHHHHhCCCEEe
Confidence 46899999999999999999999999999999987
No 306
>2ozu_A Histone acetyltransferase MYST3; structural genomics, structural G consortium, SGC; HET: ALY ACO; 2.30A {Homo sapiens} SCOP: d.108.1.1 PDB: 2rc4_A* 1m36_A
Probab=40.21 E-value=28 Score=30.93 Aligned_cols=41 Identities=20% Similarity=0.315 Sum_probs=26.0
Q ss_pred HHHHHhhhhhhhcCCceeHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHhhhhC
Q psy6552 101 QIVEVCLATNYKNGGLILLDELRTRLVKSRGKSLQHQDITNEDLLAAAKKLKIFG 155 (254)
Q Consensus 101 qive~c~~~r~~nGGii~L~dl~~~~nr~Rg~~~~~~~IS~~Di~rA~~~L~~Lg 155 (254)
.|++++. ..+++-|++.|+-.. .-|+++||+.+++.|..|.
T Consensus 202 ~il~~L~---~~~~~~isi~~is~~-----------T~i~~~DIi~tL~~l~~l~ 242 (284)
T 2ozu_A 202 VILECLY---HQNDKQISIKKLSKL-----------TGICPQDITSTLHHLRMLD 242 (284)
T ss_dssp HHHHHHH---HC-----CHHHHHHH-----------HCBCHHHHHHHHHHTTCC-
T ss_pred HHHHHHH---hcCCCcEeHHHHHHH-----------hCCCHHHHHHHHHHCCCEE
Confidence 4555544 346778999888654 4689999999999988764
No 307
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Probab=40.02 E-value=37 Score=27.71 Aligned_cols=35 Identities=9% Similarity=0.081 Sum_probs=32.7
Q ss_pred cccHHHHHHhcCCCHHHHHHHHHHHHHcCcEEEeC
Q psy6552 195 HISVSVLNNELNWSTERAQHALDFMVQEGYAWIDT 229 (254)
Q Consensus 195 ~vt~~~l~~~l~ws~~ra~~~L~~l~~~G~lwvD~ 229 (254)
.+|..+|++-+|.+++-....|..|.++|++-++.
T Consensus 193 ~lt~~~lA~~lG~sr~tvsR~l~~L~~~GlI~~~~ 227 (243)
T 3la7_A 193 KLSHQAIAEAIGSTRVTVTRLLGDLREKKMISIHK 227 (243)
T ss_dssp CCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEET
T ss_pred cCCHHHHHHHHCCcHHHHHHHHHHHHHCCCEEEcC
Confidence 47999999999999999999999999999998874
No 308
>4fxe_A Antitoxin RELB; toxin/antitoxin system, toxin, nuclease, translational contr response, RELB, ribosome, toxin-toxin inhibitor compl; 2.75A {Escherichia coli} PDB: 2k29_A 2kc8_B
Probab=39.65 E-value=14 Score=26.44 Aligned_cols=24 Identities=17% Similarity=0.357 Sum_probs=20.9
Q ss_pred hhcCHHHHHHHHHHHHHcCCCccc
Q psy6552 57 IKKDAQFRRHFQEMCASIGVDPLA 80 (254)
Q Consensus 57 I~~dp~fr~~f~~mc~~lGVdPl~ 80 (254)
++=|++...++.+.|..+|++|-+
T Consensus 6 ~RiD~~lK~~a~~v~~~lGl~~s~ 29 (79)
T 4fxe_A 6 LRIDDELKARSYAALEKMGVTPSE 29 (79)
T ss_dssp EECCHHHHHHHHHHHHHHTCCHHH
T ss_pred EEcCHHHHHHHHHHHHHhCCCHHH
Confidence 456899999999999999999765
No 309
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Probab=39.64 E-value=39 Score=26.99 Aligned_cols=35 Identities=14% Similarity=0.239 Sum_probs=32.1
Q ss_pred cccHHHHHHhcCCCHHHHHHHHHHHHHcCcEEEeC
Q psy6552 195 HISVSVLNNELNWSTERAQHALDFMVQEGYAWIDT 229 (254)
Q Consensus 195 ~vt~~~l~~~l~ws~~ra~~~L~~l~~~G~lwvD~ 229 (254)
.+|..+|++-+|.+++-....|..|.++|++-++.
T Consensus 177 ~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~~~ 211 (227)
T 3d0s_A 177 DLTQEEIAQLVGASRETVNKALADFAHRGWIRLEG 211 (227)
T ss_dssp CCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEET
T ss_pred CCCHHHHHHHhCCcHHHHHHHHHHHHHCCCEEecC
Confidence 37999999999999999999999999999987764
No 310
>2do7_A Cullin-4B, CUL-4B; helix-turn-helix motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=39.53 E-value=1e+02 Score=22.95 Aligned_cols=45 Identities=11% Similarity=0.220 Sum_probs=33.5
Q ss_pred HHHhhccCCCcccHHHHHHh------cCCCHHHHHHHHHHHHHcCcEEEeCCC
Q psy6552 185 LQQVASKNEAHISVSVLNNE------LNWSTERAQHALDFMVQEGYAWIDTQS 231 (254)
Q Consensus 185 l~l~~~~~~g~vt~~~l~~~------l~ws~~ra~~~L~~l~~~G~lwvD~q~ 231 (254)
+.+... ..-++..+|... |--++...+..++.|++.+.+-||+..
T Consensus 37 VRIMK~--rK~l~h~~Lv~eV~~ql~F~p~~~~IKk~IE~LIereYleR~~~d 87 (101)
T 2do7_A 37 VRIMKM--RKTLSHNLLVSEVYNQLKFPVKPADLKKRIESLIDRDYMERDKEN 87 (101)
T ss_dssp HHHHHH--SSEEEHHHHHHHHHHHCSSCCCHHHHHHHHHHHHHTTSEEECSSC
T ss_pred HHHHhh--cccccHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhhhHHhcCCCC
Confidence 444442 455666665432 678899999999999999999999874
No 311
>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*
Probab=39.29 E-value=49 Score=29.01 Aligned_cols=36 Identities=14% Similarity=0.223 Sum_probs=32.7
Q ss_pred CCcccHHHHHHhcCC---CHHHHHHHHHHHHHcCcEEEe
Q psy6552 193 EAHISVSVLNNELNW---STERAQHALDFMVQEGYAWID 228 (254)
Q Consensus 193 ~g~vt~~~l~~~l~w---s~~ra~~~L~~l~~~G~lwvD 228 (254)
+|.+|+.+|++.+|. ........|+.|...|++..+
T Consensus 43 ~~~~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~gll~~~ 81 (358)
T 1zg3_A 43 GKPMTLSELASSLKLHPSKVNILHRFLRLLTHNGFFAKT 81 (358)
T ss_dssp TSCEEHHHHHHHTTCCTTTHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCcCHHHHHHhcCCCCcchHHHHHHHHHHhhCCcEEEe
Confidence 357999999999999 588899999999999999987
No 312
>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}
Probab=38.81 E-value=36 Score=29.58 Aligned_cols=36 Identities=8% Similarity=0.016 Sum_probs=33.7
Q ss_pred CcccHHHHHHhcCCCHHHHHHHHHHHHHcCcEEEeC
Q psy6552 194 AHISVSVLNNELNWSTERAQHALDFMVQEGYAWIDT 229 (254)
Q Consensus 194 g~vt~~~l~~~l~ws~~ra~~~L~~l~~~G~lwvD~ 229 (254)
+.+|+.+|++.+|+++......|+.|...|++..++
T Consensus 55 ~~~t~~elA~~~~~~~~~l~rlLr~L~~~gll~~~~ 90 (352)
T 3mcz_A 55 TGRTPAEVAASFGMVEGKAAILLHALAALGLLTKEG 90 (352)
T ss_dssp SCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEET
T ss_pred CCCCHHHHHHHhCcChHHHHHHHHHHHHCCCeEecC
Confidence 379999999999999999999999999999999874
No 313
>2jnf_A Troponin C; stretch activated muscle contraction, EF-hand, metal binding protein; NMR {Lethocerus indicus} PDB: 2k2a_A
Probab=38.57 E-value=1.1e+02 Score=22.26 Aligned_cols=14 Identities=7% Similarity=0.273 Sum_probs=9.8
Q ss_pred HHHHHHHHHcCCCc
Q psy6552 65 RHFQEMCASIGVDP 78 (254)
Q Consensus 65 ~~f~~mc~~lGVdP 78 (254)
.+|..++..+|+.|
T Consensus 34 ~e~~~~l~~~~~~~ 47 (158)
T 2jnf_A 34 DQIGIILEVLGIQQ 47 (158)
T ss_dssp HHHHHHHHHTTCSC
T ss_pred HHHHHHHHHhCCCC
Confidence 46677777788765
No 314
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=37.97 E-value=61 Score=22.32 Aligned_cols=44 Identities=11% Similarity=0.208 Sum_probs=34.7
Q ss_pred cCCCCChhHHHHHHHhhccCCCcccHHHHHHhcCCCHHHHHHHHHHHH
Q psy6552 173 IPGELSLDHSLVLQQVASKNEAHISVSVLNNELNWSTERAQHALDFMV 220 (254)
Q Consensus 173 ~p~els~D~~~il~l~~~~~~g~vt~~~l~~~l~ws~~ra~~~L~~l~ 220 (254)
.-..|+..+..|+.+.. . +.|..++++.+|++..-++..+..+.
T Consensus 18 ~~~~Lt~~e~~vl~l~~---~-g~s~~eIA~~l~is~~tV~~~l~r~~ 61 (82)
T 1je8_A 18 DVNQLTPRERDILKLIA---Q-GLPNKMIARRLDITESTVKVHVKHML 61 (82)
T ss_dssp CGGGSCHHHHHHHHHHT---T-TCCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred HHccCCHHHHHHHHHHH---c-CCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 33458878888888753 2 48999999999999999988887753
No 315
>2kn2_A Calmodulin; S MAPK phosphatase 1, NTMKP1, tobacco MKP1, metal binding Pro; NMR {Glycine max}
Probab=37.21 E-value=87 Score=20.97 Aligned_cols=33 Identities=15% Similarity=0.148 Sum_probs=23.2
Q ss_pred cCCceeHHHHHHHHHHhcCCCCCCCCCCHHHHHHHH
Q psy6552 113 NGGLILLDELRTRLVKSRGKSLQHQDITNEDLLAAA 148 (254)
Q Consensus 113 nGGii~L~dl~~~~nr~Rg~~~~~~~IS~~Di~rA~ 148 (254)
+.|.|+..|....+.+.++.. ...+.+++.+|.
T Consensus 58 ~dg~i~~~eF~~~~~~~~~~~---~~~~~~~l~~aF 90 (92)
T 2kn2_A 58 GDGQVNYEEFVKMMMTVRGGG---GGNGWSRLRRKF 90 (92)
T ss_dssp CCSSEEHHHHHHHHHHHTTTC---CCHHHHHHHHHH
T ss_pred CCCcEeHHHHHHHHHhccCCC---CCchHHHHHHHh
Confidence 458999999999888876442 234457777664
No 316
>1wdc_B Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} SCOP: a.39.1.5 PDB: 1kk7_Y 1kqm_B* 1kwo_B* 1l2o_B* 1qvi_Y* 1s5g_Y* 1sr6_B 1b7t_Y 3jtd_B 3jvt_B 1scm_B 1kk8_B* 1dfk_Y 1dfl_Y* 2w4t_Y 2w4v_Y 2w4w_Y 2otg_B* 2os8_B* 3pn7_B ...
Probab=36.98 E-value=80 Score=23.22 Aligned_cols=15 Identities=13% Similarity=0.375 Sum_probs=10.6
Q ss_pred HHHHHHHHHcCCCcc
Q psy6552 65 RHFQEMCASIGVDPL 79 (254)
Q Consensus 65 ~~f~~mc~~lGVdPl 79 (254)
.+|..++.++|..|-
T Consensus 38 ~el~~~l~~~g~~~~ 52 (156)
T 1wdc_B 38 EDIKAISEQLGRAPD 52 (156)
T ss_dssp HHHHHHHHHHSSCCC
T ss_pred HHHHHHHHHhCCCCC
Confidence 467778888887643
No 317
>3j04_B Myosin regulatory light chain 2, smooth muscle MA isoform; phosphorylation, 2D crystalline arrays, myosin regulation, M light chains, structural protein; 20.00A {Gallus gallus}
Probab=36.77 E-value=20 Score=26.18 Aligned_cols=15 Identities=33% Similarity=0.667 Sum_probs=11.3
Q ss_pred HHHHHHHHHcCCCcc
Q psy6552 65 RHFQEMCASIGVDPL 79 (254)
Q Consensus 65 ~~f~~mc~~lGVdPl 79 (254)
.+|..++.++|..|-
T Consensus 27 ~el~~~l~~~g~~~~ 41 (143)
T 3j04_B 27 EDLHDMLASMGKNPT 41 (143)
T ss_dssp HHHHHHHHHTSCCCC
T ss_pred HHHHHHHHHhCCCCC
Confidence 477888888898653
No 318
>2ra5_A Putative transcriptional regulator; beta structure, UTRA domain, structural genomics, PSI-2, protein structure initiative; HET: SRT; 2.40A {Streptomyces coelicolor A3} SCOP: d.190.1.2
Probab=36.70 E-value=9.5 Score=32.47 Aligned_cols=37 Identities=16% Similarity=0.177 Sum_probs=5.5
Q ss_pred Ccc-cHHHHHHhcCCCHHHHHHHHHHHHHcCcEEEeCC
Q psy6552 194 AHI-SVSVLNNELNWSTERAQHALDFMVQEGYAWIDTQ 230 (254)
Q Consensus 194 g~v-t~~~l~~~l~ws~~ra~~~L~~l~~~G~lwvD~q 230 (254)
..+ |..+|++.+|.|..-++++|..|+++|++-+-..
T Consensus 38 ~~lPse~~La~~~~vSr~tvr~Al~~L~~~G~i~~~~g 75 (247)
T 2ra5_A 38 SLLGNEIELAARLGLSRPTVRQAIQSLVDKGLLVRRRG 75 (247)
T ss_dssp ------------------------------CEEEEEC-
T ss_pred CCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEcC
Confidence 356 8999999999999999999999999999977643
No 319
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=36.63 E-value=41 Score=27.45 Aligned_cols=36 Identities=8% Similarity=-0.021 Sum_probs=32.8
Q ss_pred cccHHHHHHhcCCCHHHHHHHHHHHHHcCcEEEeCC
Q psy6552 195 HISVSVLNNELNWSTERAQHALDFMVQEGYAWIDTQ 230 (254)
Q Consensus 195 ~vt~~~l~~~l~ws~~ra~~~L~~l~~~G~lwvD~q 230 (254)
.+|..+|++-+|.+++-....|..|.++|++-++..
T Consensus 177 ~~t~~~iA~~lG~sr~tvsR~l~~L~~~g~I~~~~~ 212 (250)
T 3e6c_C 177 PLSQKSIGEITGVHHVTVSRVLASLKRENILDKKKN 212 (250)
T ss_dssp CCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECSS
T ss_pred CCCHHHHHHHhCCcHHHHHHHHHHHHHCCCeEeCCC
Confidence 479999999999999999999999999999988653
No 320
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Probab=36.57 E-value=38 Score=26.99 Aligned_cols=34 Identities=9% Similarity=-0.045 Sum_probs=31.7
Q ss_pred cccHHHHHHhcCCCHHHHHHHHHHHHHcCcEEEe
Q psy6552 195 HISVSVLNNELNWSTERAQHALDFMVQEGYAWID 228 (254)
Q Consensus 195 ~vt~~~l~~~l~ws~~ra~~~L~~l~~~G~lwvD 228 (254)
.+|..+|++-+|.+++-....|..|.++|++-++
T Consensus 167 ~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~~ 200 (220)
T 2fmy_A 167 GLNTEEIALMLGTTRQTVSVLLNDFKKMGILERV 200 (220)
T ss_dssp SSCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEES
T ss_pred cCCHHHHHHHhCCcHHHHHHHHHHHHHCCCEEEc
Confidence 4899999999999999999999999999998775
No 321
>2lhi_A Calmodulin, serine/threonine-protein phosphatase catalytic subunit A1; yeast calmodulin, CNA1, metal binding protein; NMR {Saccharomyces cerevisiae}
Probab=36.50 E-value=31 Score=27.13 Aligned_cols=15 Identities=20% Similarity=0.476 Sum_probs=10.6
Q ss_pred HHHHHHHHHcCCCcc
Q psy6552 65 RHFQEMCASIGVDPL 79 (254)
Q Consensus 65 ~~f~~mc~~lGVdPl 79 (254)
.+|..++.++|.+|-
T Consensus 31 ~El~~~l~~lg~~~~ 45 (176)
T 2lhi_A 31 SELATVMRSLGLSPS 45 (176)
T ss_dssp HHHHHHHHHHTCCCC
T ss_pred HHHHHHHHHcCCChh
Confidence 356777778888764
No 322
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=36.44 E-value=1.6e+02 Score=25.01 Aligned_cols=93 Identities=14% Similarity=0.076 Sum_probs=56.0
Q ss_pred CCCCHHHHHHHHHHhhhhCCCeEEEEeCCceEEEEccCCCCChhHHHHHHHhhc---cCCCcccH-------HHHHHhcC
Q psy6552 137 QDITNEDLLAAAKKLKIFGNGFSIIPIGQGQYLVQSIPGELSLDHSLVLQQVAS---KNEAHISV-------SVLNNELN 206 (254)
Q Consensus 137 ~~IS~~Di~rA~~~L~~Lg~g~~l~~~~sg~~vv~s~p~els~D~~~il~l~~~---~~~g~vt~-------~~l~~~l~ 206 (254)
..|+.+|+..|++.+..- . +.... ..++..+..++..+.. .....++. .++++.+|
T Consensus 258 ~~i~~~~v~~a~~~~~~~------------~-~~~~~-~~l~~~~~~il~ai~~~~~~g~~~~~~~~l~~~~~~~~~~~g 323 (386)
T 2qby_A 258 TKVKEEYVYMAKEEIERD------------R-VRDII-LTLPFHSKLVLMAVVSISSEENVVSTTGAVYETYLNICKKLG 323 (386)
T ss_dssp SSCCHHHHHHHHHHHHHH------------H-HHHHH-HTSCHHHHHHHHHHHHHC-----CEEHHHHHHHHHHHHHHHT
T ss_pred CccCHHHHHHHHHHHhhc------------h-HHHHH-HcCCHHHHHHHHHHHHHHhcCCCceeHHHHHHHHHHHHHhcC
Confidence 579999999999887521 0 00111 1245566666543331 11234566 56677777
Q ss_pred CCH---HHHHHHHHHHHHcCcEEEeCCCC-Ccccceecccc
Q psy6552 207 WST---ERAQHALDFMVQEGYAWIDTQSP-QEHLYWFPSLF 243 (254)
Q Consensus 207 ws~---~ra~~~L~~l~~~G~lwvD~q~~-~e~~yw~p~lf 243 (254)
.++ ..+..+|+.|+..|++-...... ..+.|....+.
T Consensus 324 ~~~~~~~~~~~~l~~L~~~gli~~~~~~~~~~g~y~~~~l~ 364 (386)
T 2qby_A 324 VEAVTQRRVSDIINELDMVGILTAKVVNRGRYGKTKEIGLA 364 (386)
T ss_dssp CCCCCHHHHHHHHHHHHHHTSEEEEECCCTTSCCCEEEEES
T ss_pred CCCCCHHHHHHHHHHHHhCCCEEEEeecCCCCCCeEEEEeC
Confidence 654 88899999999999998764321 34566554443
No 323
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=36.28 E-value=36 Score=27.09 Aligned_cols=35 Identities=14% Similarity=0.239 Sum_probs=32.1
Q ss_pred cccHHHHHHhcCCCHHHHHHHHHHHHHcCcEEEeC
Q psy6552 195 HISVSVLNNELNWSTERAQHALDFMVQEGYAWIDT 229 (254)
Q Consensus 195 ~vt~~~l~~~l~ws~~ra~~~L~~l~~~G~lwvD~ 229 (254)
.+|..+|++-+|.+++-....|..|.++|++-++.
T Consensus 178 ~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~~~ 212 (227)
T 3dkw_A 178 PVAKQLVAGHLSIQPETFSRIMHRLGDEGIIHLDG 212 (227)
T ss_dssp CSCTHHHHHHTTSCHHHHHHHHHHHHHHTSEEESS
T ss_pred cCCHHHHHHHhCCCHHHHHHHHHHHHHCCcEEecC
Confidence 47899999999999999999999999999997753
No 324
>3eez_A Putative mandelate racemase/muconate lactonizing enzyme; structural genomics, unknown function, PSI-2, protein structure initiative; 2.80A {Silicibacter pomeroyi}
Probab=35.95 E-value=20 Score=32.53 Aligned_cols=77 Identities=10% Similarity=0.168 Sum_probs=50.2
Q ss_pred CCCHHHHHHHHHHhhhhCCCeEEEEeCCceEEEEccCCCCChhHHHHHHHhhccCCC---cccHHHHHHhcCCCHHHHHH
Q psy6552 138 DITNEDLLAAAKKLKIFGNGFSIIPIGQGQYLVQSIPGELSLDHSLVLQQVASKNEA---HISVSVLNNELNWSTERAQH 214 (254)
Q Consensus 138 ~IS~~Di~rA~~~L~~Lg~g~~l~~~~sg~~vv~s~p~els~D~~~il~l~~~~~~g---~vt~~~l~~~l~ws~~ra~~ 214 (254)
.-+|+++.++++.+... ||+.++++=|. ....|-.. ++.+.+. -| -+.++ -+-+|+..-|.+
T Consensus 143 ~~~~e~~~~~a~~~~~~--G~~~iKiK~G~--------~~~~d~~~-v~avR~a-~g~~~~l~vD---an~~~~~~~a~~ 207 (378)
T 3eez_A 143 AKSVEETRAVIDRYRQR--GYVAHSVKIGG--------DVERDIAR-IRDVEDI-REPGEIVLYD---VNRGWTRQQALR 207 (378)
T ss_dssp SCCHHHHHHHHHHHHHT--TCCEEEEECCS--------CHHHHHHH-HHHHTTS-CCTTCEEEEE---CTTCCCHHHHHH
T ss_pred CCCHHHHHHHHHHHHhC--CCCEEEeccCC--------CHHHHHHH-HHHHHHH-cCCCceEEEE---CCCCCCHHHHHH
Confidence 35899999998887654 57777775221 13334333 3444322 22 13222 478999999999
Q ss_pred HHHHHHHcCcEEEeCC
Q psy6552 215 ALDFMVQEGYAWIDTQ 230 (254)
Q Consensus 215 ~L~~l~~~G~lwvD~q 230 (254)
.++.|...|+ |+.+-
T Consensus 208 ~~~~l~~~~i-~iEqP 222 (378)
T 3eez_A 208 VMRATEDLHV-MFEQP 222 (378)
T ss_dssp HHHHTGGGTC-CEECC
T ss_pred HHHHhccCCe-EEecC
Confidence 9999999999 99753
No 325
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1
Probab=35.87 E-value=39 Score=27.02 Aligned_cols=36 Identities=22% Similarity=0.353 Sum_probs=32.4
Q ss_pred cccHHHHHHhcCCCHHHHHHHHHHHHHcCcEEEeCC
Q psy6552 195 HISVSVLNNELNWSTERAQHALDFMVQEGYAWIDTQ 230 (254)
Q Consensus 195 ~vt~~~l~~~l~ws~~ra~~~L~~l~~~G~lwvD~q 230 (254)
.+|..+|++-+|.+++-....|..|.++|++-++..
T Consensus 163 ~~t~~~lA~~lG~sr~tvsR~l~~L~~~g~I~~~~~ 198 (222)
T 1ft9_A 163 DFTVEEIANLIGSSRQTTSTALNSLIKEGYISRQGR 198 (222)
T ss_dssp CCCHHHHHHHHCSCHHHHHHHHHHHHHTTSSEECST
T ss_pred cCCHHHHHHHhCCcHHHHHHHHHHHHHCCcEEEcCC
Confidence 389999999999999999999999999999877643
No 326
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2
Probab=35.52 E-value=43 Score=27.08 Aligned_cols=35 Identities=11% Similarity=0.138 Sum_probs=32.2
Q ss_pred cccHHHHHHhcCCCHHHHHHHHHHHHHcCcEEEeC
Q psy6552 195 HISVSVLNNELNWSTERAQHALDFMVQEGYAWIDT 229 (254)
Q Consensus 195 ~vt~~~l~~~l~ws~~ra~~~L~~l~~~G~lwvD~ 229 (254)
.+|..+|++-+|.+++-....|..|.++|++-++.
T Consensus 186 ~~t~~~lA~~lG~sr~tvsR~l~~l~~~glI~~~~ 220 (232)
T 1zyb_A 186 KVKMDDLARCLDDTRLNISKTLNELQDNGLIELHR 220 (232)
T ss_dssp ECCHHHHHHHHTSCHHHHHHHHHHHHHTTSCEEET
T ss_pred cCCHHHHHHHhCCChhHHHHHHHHHHHCCCEEecC
Confidence 37999999999999999999999999999987764
No 327
>3g2b_A Coenzyme PQQ synthesis protein D; helix-turn-helix, PQQ biosynthesis, biosynthetic protein; 1.66A {Xanthomonas campestris PV}
Probab=35.48 E-value=1.3e+02 Score=21.87 Aligned_cols=67 Identities=15% Similarity=0.101 Sum_probs=45.1
Q ss_pred hCCCeEEEE--eCCceEEEEccC--CCCChhHHHHHHHhhccCCCcccHHH----HHHhcCCCHH----HHHHHHHHHHH
Q psy6552 154 FGNGFSIIP--IGQGQYLVQSIP--GELSLDHSLVLQQVASKNEAHISVSV----LNNELNWSTE----RAQHALDFMVQ 221 (254)
Q Consensus 154 Lg~g~~l~~--~~sg~~vv~s~p--~els~D~~~il~l~~~~~~g~vt~~~----l~~~l~ws~~----ra~~~L~~l~~ 221 (254)
|..||++.. .. |..|+-... ..+|.--..|+++|. |.-|+.+ |++.|+.+.+ ...+-|..|.+
T Consensus 15 l~~~~rl~~d~~~-~~~VlL~peg~i~Ln~~a~~Iw~l~D----G~rtv~eIv~~L~~~y~~~~e~i~~DV~~FL~~L~~ 89 (95)
T 3g2b_A 15 LRAGVRLQHDRAR-DQWVLLAPERVVELDDIALVVAQRYD----GTQSLAQIAQTLAAEFDADASEIETDVIELTTTLHQ 89 (95)
T ss_dssp CCTTCEEEEEGGG-TEEEEECCCCCCCCCTHHHHHHHHCC----SSSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred eCCCeEEEEeccC-CcEEEECCCceeecCHHHHHHHHHcc----CCCCHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHH
Confidence 567888863 34 666665433 367766788899988 5566655 4578888853 34445777888
Q ss_pred cCcE
Q psy6552 222 EGYA 225 (254)
Q Consensus 222 ~G~l 225 (254)
+|++
T Consensus 90 ~g~I 93 (95)
T 3g2b_A 90 KRLL 93 (95)
T ss_dssp TTCC
T ss_pred CcCE
Confidence 8875
No 328
>3ozy_A Putative mandelate racemase; beta-alpha barrel, enolase superfamily member, M-xylarate, U function; HET: DXL; 1.30A {Bordetella bronchiseptica} PDB: 3ozm_A* 3h12_A 3op2_A*
Probab=35.34 E-value=17 Score=33.07 Aligned_cols=81 Identities=15% Similarity=0.190 Sum_probs=51.5
Q ss_pred CCCHHHHHHHHHHhhhhCCCeEEEEeCCceEEEEccCCCCChhHHHHHHHhhcc-CCCcccHHHHHHhcCCCHHHHHHHH
Q psy6552 138 DITNEDLLAAAKKLKIFGNGFSIIPIGQGQYLVQSIPGELSLDHSLVLQQVASK-NEAHISVSVLNNELNWSTERAQHAL 216 (254)
Q Consensus 138 ~IS~~Di~rA~~~L~~Lg~g~~l~~~~sg~~vv~s~p~els~D~~~il~l~~~~-~~g~vt~~~l~~~l~ws~~ra~~~L 216 (254)
.-+|+++.++++.+... ||+.++++=|. ....|-..+-.+-+.- ..--+.++ -|-+|+..-|.+.+
T Consensus 149 ~~~~e~~~~~a~~~~~~--G~~~iKiKvG~--------~~~~d~~~v~avR~a~g~d~~l~vD---an~~~~~~~A~~~~ 215 (389)
T 3ozy_A 149 DLTPDQAADELAGWVEQ--GFTAAKLKVGR--------APRKDAANLRAMRQRVGADVEILVD---ANQSLGRHDALAML 215 (389)
T ss_dssp SCCHHHHHHHHHHHHHT--TCSEEEEECCS--------CHHHHHHHHHHHHHHHCTTSEEEEE---CTTCCCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHC--CCCEEeeccCC--------CHHHHHHHHHHHHHHcCCCceEEEE---CCCCcCHHHHHHHH
Confidence 45899999999887664 47777765221 1343443332222211 01123222 36799999999999
Q ss_pred HHHHHcCcEEEeCCC
Q psy6552 217 DFMVQEGYAWIDTQS 231 (254)
Q Consensus 217 ~~l~~~G~lwvD~q~ 231 (254)
..|.+.|+.|+.+-.
T Consensus 216 ~~l~~~~i~~iEqP~ 230 (389)
T 3ozy_A 216 RILDEAGCYWFEEPL 230 (389)
T ss_dssp HHHHHTTCSEEESCS
T ss_pred HHHHhcCCCEEECCC
Confidence 999999999998643
No 329
>2v7f_A RPS19, RPS19E SSU ribosomal protein S19E; diamond blackfan anemia small ribosomal subunit; 1.15A {Pyrococcus abyssi} SCOP: a.4.5.84
Probab=35.30 E-value=35 Score=27.19 Aligned_cols=90 Identities=10% Similarity=-0.029 Sum_probs=53.7
Q ss_pred CCCHHHHHHHHHHhhhhCCCeEEEEeCCceEEEEccC-CCCChh-----HHHHHHHhhcc-CCCcccHHHHHHhcC----
Q psy6552 138 DITNEDLLAAAKKLKIFGNGFSIIPIGQGQYLVQSIP-GELSLD-----HSLVLQQVASK-NEAHISVSVLNNELN---- 206 (254)
Q Consensus 138 ~IS~~Di~rA~~~L~~Lg~g~~l~~~~sg~~vv~s~p-~els~D-----~~~il~l~~~~-~~g~vt~~~l~~~l~---- 206 (254)
.|.++++.+|+..+-+-..-+.+ ..-..+|.+.. .|+... ...+.+.+... ..|.+-..+|++.+|
T Consensus 6 dv~~~~~i~~~a~~lk~~~ki~~---P~w~~~vKt~~~ke~~p~~~~~~y~ria~~lr~~i~~g~~G~~~La~~~gg~k~ 82 (150)
T 2v7f_A 6 DVPGDLLVERVAQRLKEIPEIKP---PEWAPFVKTGRHKERLPEQEDWWYYRVASILRRVYLDGPVGIERLRTYYGGRKN 82 (150)
T ss_dssp GSCHHHHHHHHHHHHTTCTTCCC---CSCGGGCCC------CHHHHTHHHHHHHHHHHHHHHHCSBCHHHHHHHHCC---
T ss_pred ccCHHHHHHHHHHHHHhcCCCCC---cchhhhhcccccccCCCCCcchHHHHHHHHHHHHHHhCCCCHHHHHHHHCCCcc
Confidence 68899999998876443222221 11111222222 233332 22333332210 023455699999999
Q ss_pred ----------CCHHHHHHHHHHHHHcCcEEEeCC
Q psy6552 207 ----------WSTERAQHALDFMVQEGYAWIDTQ 230 (254)
Q Consensus 207 ----------ws~~ra~~~L~~l~~~G~lwvD~q 230 (254)
.|..-.+++|..|+.+|++-....
T Consensus 83 ~g~~p~~~~~vSr~tVR~AL~~Le~~GlV~~~~~ 116 (150)
T 2v7f_A 83 RGHAPERFYKAGGSIIRKALQQLEAAGFVEKVPG 116 (150)
T ss_dssp -CCCTTSCCCHHHHHHHHHHHHHHHTTSEEEETT
T ss_pred CCcCCccccccchHHHHHHHHHHHHCCCEEEeCC
Confidence 999999999999999999998844
No 330
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=34.85 E-value=80 Score=24.16 Aligned_cols=57 Identities=11% Similarity=0.053 Sum_probs=41.6
Q ss_pred HHHHHHHhhhhhhhcCCceeHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHhhhhCCCeEEEEeCCc
Q psy6552 99 SVQIVEVCLATNYKNGGLILLDELRTRLVKSRGKSLQHQDITNEDLLAAAKKLKIFGNGFSIIPIGQG 166 (254)
Q Consensus 99 avqive~c~~~r~~nGGii~L~dl~~~~nr~Rg~~~~~~~IS~~Di~rA~~~L~~Lg~g~~l~~~~sg 166 (254)
-..|.+++.. +++-++..|++..+.+.- ..||+.=|+|.++.|...|.=-+ +.+++|
T Consensus 16 R~~Il~~L~~----~~~h~sa~eI~~~l~~~~------~~is~aTVYR~L~~L~e~Glv~~-~~~~~g 72 (139)
T 3mwm_A 16 RAAVSAALQE----VEEFRSAQELHDMLKHKG------DAVGLTTVYRTLQSLADAGEVDV-LRTAEG 72 (139)
T ss_dssp HHHHHHHHTT----CSSCEEHHHHHHHHHHTT------CCCCHHHHHHHHHHHHHTTSSEE-EECTTS
T ss_pred HHHHHHHHHh----CCCCCCHHHHHHHHHHhC------CCCCHHHHHHHHHHHHHCCCEEE-EEcCCC
Confidence 3456665543 456899999999997642 47999999999999999996433 344434
No 331
>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*
Probab=34.73 E-value=54 Score=28.95 Aligned_cols=33 Identities=15% Similarity=0.097 Sum_probs=30.6
Q ss_pred ccHHHHHHhcCC------CHHHHHHHHHHHHHcCcEEEe
Q psy6552 196 ISVSVLNNELNW------STERAQHALDFMVQEGYAWID 228 (254)
Q Consensus 196 vt~~~l~~~l~w------s~~ra~~~L~~l~~~G~lwvD 228 (254)
+|+.+|++.+|. .+......|+.|...|++..+
T Consensus 63 ~t~~eLA~~~~~~~~~~~~~~~l~rlLr~L~~~gll~~~ 101 (372)
T 1fp1_D 63 MSPSEIASKLPASTQHSDLPNRLDRMLRLLASYSVLTST 101 (372)
T ss_dssp BCHHHHHTTSCGGGCCTTHHHHHHHHHHHHHHTTSEEEE
T ss_pred cCHHHHHHhcCCCCCCCcChHHHHHHHHHHhhCCceEec
Confidence 999999999999 677889999999999999987
No 332
>1nya_A Calerythrin; EF-hand, metal binding protein; NMR {Saccharopolyspora erythraea} SCOP: a.39.1.5
Probab=34.48 E-value=1.4e+02 Score=22.08 Aligned_cols=60 Identities=12% Similarity=0.125 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHcCCCcccCCCccccccccchhHHHHHHHHHHHhhhhhhhc-CCceeHHHHHHHHHHh
Q psy6552 61 AQFRRHFQEMCASIGVDPLASRKGFWSLLGMGDFYYELSVQIVEVCLATNYKN-GGLILLDELRTRLVKS 129 (254)
Q Consensus 61 p~fr~~f~~mc~~lGVdPl~s~kg~w~~lg~gdfy~eLavqive~c~~~r~~n-GGii~L~dl~~~~nr~ 129 (254)
.+|+..+..++..+|++|-... +...+..+ ...++-+....+.+ .|.|+..|....+.+.
T Consensus 27 ~el~~~~~~~l~~~g~~~~~~~--------~~~l~~~~-~~~~~~lf~~~D~d~dg~i~~~Ef~~~~~~~ 87 (176)
T 1nya_A 27 ADFEKEAQHIAEAFGKDAGAAE--------VQTLKNAF-GGLFDYLAKEAGVGSDGSLTEEQFIRVTENL 87 (176)
T ss_dssp HHHHHHHHHHHHHTSSCSSSHH--------HHHHHHHH-HHHHHHHHHHHTSCTTCCBCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCCcHH--------HHHHHHHH-HHHHHHHHHHhCCCCCCeEcHHHHHHHHHHH
Confidence 4565555557888998764321 11111111 11222233333333 4778888877776664
No 333
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=34.26 E-value=85 Score=22.21 Aligned_cols=41 Identities=20% Similarity=0.266 Sum_probs=34.2
Q ss_pred CCChhHHHHHHHhhccCCCcccHHHHHHhcCCCHHHHHHHHHHHH
Q psy6552 176 ELSLDHSLVLQQVASKNEAHISVSVLNNELNWSTERAQHALDFMV 220 (254)
Q Consensus 176 els~D~~~il~l~~~~~~g~vt~~~l~~~l~ws~~ra~~~L~~l~ 220 (254)
.|+.-+..|+.+.. .+.|..++++.+|+|..-++..+..+.
T Consensus 29 ~Lt~rE~~Vl~l~~----~G~s~~eIA~~L~iS~~TV~~~~~~i~ 69 (90)
T 3ulq_B 29 VLTPRECLILQEVE----KGFTNQEIADALHLSKRSIEYSLTSIF 69 (90)
T ss_dssp CCCHHHHHHHHHHH----TTCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH----cCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 47777888888877 247999999999999999999988753
No 334
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=33.95 E-value=34 Score=32.77 Aligned_cols=26 Identities=23% Similarity=0.217 Sum_probs=19.4
Q ss_pred HHHHHhcCCCCCCCCCCHHHHHHHHHHhhh
Q psy6552 124 TRLVKSRGKSLQHQDITNEDLLAAAKKLKI 153 (254)
Q Consensus 124 ~~~nr~Rg~~~~~~~IS~~Di~rA~~~L~~ 153 (254)
...-+.++. +.|+|+|+..|+.+++.
T Consensus 460 ~A~A~L~gR----~~V~~eDV~~Ai~L~~~ 485 (506)
T 3f8t_A 460 KAHARMRLS----DDVEPEDVDIAAELVDW 485 (506)
T ss_dssp HHHHHHTTC----SEECHHHHHHHHHHHHH
T ss_pred HHHHHHcCc----CCCCHHHHHHHHHHHHH
Confidence 333444455 78999999999999864
No 335
>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A
Probab=33.93 E-value=46 Score=27.01 Aligned_cols=35 Identities=9% Similarity=0.076 Sum_probs=31.9
Q ss_pred cccHHHHHHhcCCCH-HHHHHHHHHHHHcCcEEEeC
Q psy6552 195 HISVSVLNNELNWST-ERAQHALDFMVQEGYAWIDT 229 (254)
Q Consensus 195 ~vt~~~l~~~l~ws~-~ra~~~L~~l~~~G~lwvD~ 229 (254)
.+|..+|++-+|.++ +-....|..|.++|++-++.
T Consensus 169 ~~t~~~lA~~lG~sr~etvsR~l~~l~~~glI~~~~ 204 (238)
T 2bgc_A 169 NLTMQELGYSSGIAHSSAVSRIISKLKQEKVIVYKN 204 (238)
T ss_dssp CCCHHHHHHHTTCCCHHHHHHHHHHHHHTTSEEEET
T ss_pred cCCHHHHHHHhCCChHHHHHHHHHHHHHCCCEEecC
Confidence 588999999999999 79999999999999988774
No 336
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=33.87 E-value=79 Score=20.96 Aligned_cols=40 Identities=20% Similarity=0.177 Sum_probs=30.9
Q ss_pred CChhHHHHHHHhhccCCCcccHHHHHHhcCCCHHHHHHHHHHHH
Q psy6552 177 LSLDHSLVLQQVASKNEAHISVSVLNNELNWSTERAQHALDFMV 220 (254)
Q Consensus 177 ls~D~~~il~l~~~~~~g~vt~~~l~~~l~ws~~ra~~~L~~l~ 220 (254)
|++.+..|+.+.- .+.|..++++.+|+|..-++..+..+.
T Consensus 17 L~~~e~~vl~l~~----~g~s~~eIA~~l~is~~tV~~~~~r~~ 56 (79)
T 1x3u_A 17 LSERERQVLSAVV----AGLPNKSIAYDLDISPRTVEVHRANVM 56 (79)
T ss_dssp HCHHHHHHHHHHT----TTCCHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH----cCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 4556667776642 358999999999999999998887753
No 337
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=33.77 E-value=93 Score=22.01 Aligned_cols=41 Identities=5% Similarity=0.135 Sum_probs=33.8
Q ss_pred CCChhHHHHHHHhhccCCCcccHHHHHHhcCCCHHHHHHHHHHHH
Q psy6552 176 ELSLDHSLVLQQVASKNEAHISVSVLNNELNWSTERAQHALDFMV 220 (254)
Q Consensus 176 els~D~~~il~l~~~~~~g~vt~~~l~~~l~ws~~ra~~~L~~l~ 220 (254)
.|+..+..|+.+.. .+.|..++++.+|+|..-++..+..+.
T Consensus 27 ~Lt~~e~~vl~l~~----~g~s~~eIA~~l~is~~tV~~~l~r~~ 67 (95)
T 3c57_A 27 GLTDQERTLLGLLS----EGLTNKQIADRMFLAEKTVKNYVSRLL 67 (95)
T ss_dssp CCCHHHHHHHHHHH----TTCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHH----cCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 47878888888863 248999999999999999999888753
No 338
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=33.65 E-value=92 Score=23.89 Aligned_cols=47 Identities=11% Similarity=0.076 Sum_probs=37.6
Q ss_pred HHHHHHhhhhhhhcCCceeHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHhhhhCC
Q psy6552 100 VQIVEVCLATNYKNGGLILLDELRTRLVKSRGKSLQHQDITNEDLLAAAKKLKIFGN 156 (254)
Q Consensus 100 vqive~c~~~r~~nGGii~L~dl~~~~nr~Rg~~~~~~~IS~~Di~rA~~~L~~Lg~ 156 (254)
..|.+++.. +++-++..||+..+.+.- +.||+.=|.|.++.|...|.
T Consensus 25 ~~Il~~L~~----~~~~~sa~ei~~~l~~~~------~~is~aTVYR~L~~L~e~Gl 71 (145)
T 2fe3_A 25 HAILEYLVN----SMAHPTADDIYKALEGKF------PNMSVATVYNNLRVFRESGL 71 (145)
T ss_dssp HHHHHHHHH----CSSCCCHHHHHHHHGGGC------TTCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHh----CCCCCCHHHHHHHHHHhC------CCCChhhHHHHHHHHHHCCC
Confidence 356666654 456789999999997652 47999999999999999985
No 339
>3mse_B Calcium-dependent protein kinase, putative; CDPKS, malaria, structural genomics consortium, SGC, transfe; 2.10A {Plasmodium falciparum}
Probab=33.34 E-value=1.6e+02 Score=22.42 Aligned_cols=13 Identities=31% Similarity=0.572 Sum_probs=7.7
Q ss_pred HHHHHHHHHcCCC
Q psy6552 65 RHFQEMCASIGVD 77 (254)
Q Consensus 65 ~~f~~mc~~lGVd 77 (254)
.+|..++.++|++
T Consensus 59 ~El~~~l~~~g~~ 71 (180)
T 3mse_B 59 REIYTVLASVGIK 71 (180)
T ss_dssp HHHHHHHHHTTCC
T ss_pred HHHHHHHHHcCCC
Confidence 3556666666654
No 340
>1mgp_A Hypothetical protein TM841; two domain structure with mixed alpha/beta structures in BOTH domains, structural genomics; HET: PLM; 2.00A {Thermotoga maritima} SCOP: c.119.1.1 PDB: 1vpv_A*
Probab=33.29 E-value=2.5e+02 Score=24.69 Aligned_cols=103 Identities=11% Similarity=0.019 Sum_probs=60.3
Q ss_pred ceeHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHhhhhCCCeEEEEeCCceEEEEccCCCCChhHHHHHHHhhcc----
Q psy6552 116 LILLDELRTRLVKSRGKSLQHQDITNEDLLAAAKKLKIFGNGFSIIPIGQGQYLVQSIPGELSLDHSLVLQQVASK---- 191 (254)
Q Consensus 116 ii~L~dl~~~~nr~Rg~~~~~~~IS~~Di~rA~~~L~~Lg~g~~l~~~~sg~~vv~s~p~els~D~~~il~l~~~~---- 191 (254)
=|+..|+|..+......+. ....||.|+..+.+.+..-|.. .++.+. .+..||.=.+....+++..
T Consensus 69 di~~~efy~~m~~~~~~pk-TSqPs~~~~~e~f~~l~~~g~d-~Ii~I~--------iSs~LSGTy~sA~~Aa~~~~~~I 138 (313)
T 1mgp_A 69 PEEIMNFYKRIREAGSVPK-TSQPSVEDFKKRYLKYKEEDYD-VVLVLT--------LSSKLSGTYNSAVLASKEVDIPV 138 (313)
T ss_dssp HHHHHHHHHHHHHCSSCCE-EECCCHHHHHHHHHHHHHTTCS-EEEEEE--------SCTTTCSHHHHHHHHHHHSSSCE
T ss_pred CCCHHHHHHHHHhCCCCcc-cCCcCHHHHHHHHHHHHHcCCC-eEEEEE--------CCccHhHHHHHHHHHHhcCCCeE
Confidence 3788899999876432211 1479999999999988655421 343333 2223665444443333321
Q ss_pred ----------CCCc--ccHHHHHHhcCCCHHHHHHHHHHHHH----cCcEEEeC
Q psy6552 192 ----------NEAH--ISVSVLNNELNWSTERAQHALDFMVQ----EGYAWIDT 229 (254)
Q Consensus 192 ----------~~g~--vt~~~l~~~l~ws~~ra~~~L~~l~~----~G~lwvD~ 229 (254)
..|+ +-+.+++ .-|.+.+-..+.|+.+.. .-+..+|+
T Consensus 139 ~ViDS~~~s~g~g~lv~~Aa~l~-~~G~s~eeI~~~l~~~~~~~~~~~~f~v~~ 191 (313)
T 1mgp_A 139 YVVDTLLASGAIPLPARVAREML-ENGATIEEVLKKLDERMKNKDFKAIFYVSN 191 (313)
T ss_dssp EEEECSCCGGGTHHHHHHHHHHH-HTTCCHHHHHHHHHHHHHTTCEEEEEEESC
T ss_pred EEEeCCcchHHHHHHHHHHHHHH-hcCCCHHHHHHHHHHHhhhCceEEEEEeCC
Confidence 0111 2233333 349999999999999877 44555665
No 341
>4e97_A Lysozyme; hydrolase, alkylation with 2-mercaptoethanol; 1.30A {Enterobacteria phage T4} PDB: 4ekp_A 4ekq_A* 4ekr_A 4eks_A
Probab=32.73 E-value=17 Score=29.79 Aligned_cols=79 Identities=16% Similarity=0.088 Sum_probs=39.4
Q ss_pred cccchHHHHHHH-HHHHHHHHHHHHHHHHHHhhhhhhcCHHHHHHHHHHHHHcCCCcccCCCccccccccchhHHHHHHH
Q psy6552 23 KGTSIQENQLEQ-LSQHLNTFRDKLESFASEYKNEIKKDAQFRRHFQEMCASIGVDPLASRKGFWSLLGMGDFYYELSVQ 101 (254)
Q Consensus 23 ~g~~l~~~~~~~-L~~ql~~fk~~L~~FA~kh~~~I~~dp~fr~~f~~mc~~lGVdPl~s~kg~w~~lg~gdfy~eLavq 101 (254)
.|..+++++.+. |..-+..+...+......+..--.-++.-+..+-+||-+||+.-|..++.+|..+..|||. +-|.+
T Consensus 77 ~g~~it~~~a~~ll~~Dl~~~~~~~~~~~~~~~~~~~l~~~~~~ALvsm~FNlG~~~l~kf~~ml~~ln~gd~~-~Aa~E 155 (187)
T 4e97_A 77 CNGVITKDEAEKLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRCAAINHVFQMGVTGVAGFTNVLRMLQQKRWD-EAAVN 155 (187)
T ss_dssp CTTBCCHHHHHHHHHHHHHHHHHHHHTCTTHHHHHHHSCHHHHHHHHHHHHHHCHHHHHTCHHHHHHHHTTCHH-HHHHH
T ss_pred CCCccCHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCHHHHHHheeeeeccCCcchhhCHHHHHHHHcCCHH-HHHHH
Confidence 345566655554 3333444433332211111111112455556789999999998776544455444445543 33444
Q ss_pred H
Q psy6552 102 I 102 (254)
Q Consensus 102 i 102 (254)
+
T Consensus 156 m 156 (187)
T 4e97_A 156 L 156 (187)
T ss_dssp H
T ss_pred H
Confidence 4
No 342
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli}
Probab=32.46 E-value=52 Score=27.22 Aligned_cols=35 Identities=11% Similarity=0.131 Sum_probs=32.2
Q ss_pred cccHHHHHHhcCCCHHHHHHHHHHHHHcCcEEEeC
Q psy6552 195 HISVSVLNNELNWSTERAQHALDFMVQEGYAWIDT 229 (254)
Q Consensus 195 ~vt~~~l~~~l~ws~~ra~~~L~~l~~~G~lwvD~ 229 (254)
.+|..+|++-+|.+++-....|..|.++|++-++.
T Consensus 217 ~lt~~~lA~~lG~sr~tvsR~l~~L~~~GlI~~~~ 251 (260)
T 3kcc_A 217 KITRQEIGQIVGCSRETVGRILKMLEDQNLISAHG 251 (260)
T ss_dssp ECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECS
T ss_pred cCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEEcC
Confidence 47899999999999999999999999999998764
No 343
>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*
Probab=32.41 E-value=60 Score=28.37 Aligned_cols=36 Identities=19% Similarity=0.243 Sum_probs=32.5
Q ss_pred CCcccHHHHHHhcCCC---HHHHHHHHHHHHHcCcEEEe
Q psy6552 193 EAHISVSVLNNELNWS---TERAQHALDFMVQEGYAWID 228 (254)
Q Consensus 193 ~g~vt~~~l~~~l~ws---~~ra~~~L~~l~~~G~lwvD 228 (254)
+|.+|+.+|++.+|.+ .......|+.|...|++..+
T Consensus 49 ~~~~t~~ela~~~~~~~~~~~~l~rlLr~L~~~gll~~~ 87 (352)
T 1fp2_A 49 GKPISLSNLVSILQVPSSKIGNVRRLMRYLAHNGFFEII 87 (352)
T ss_dssp TSCEEHHHHHHHHTCCGGGHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCccHHHHHHHhCcCCCChHHHHHHHHHHHhCCeEEEe
Confidence 3589999999999995 77889999999999999988
No 344
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=32.38 E-value=13 Score=36.28 Aligned_cols=92 Identities=16% Similarity=0.090 Sum_probs=18.3
Q ss_pred CCCCHHHHHHHHHHhhhhCCCeEEEEeCCc---eE----EEEcc-CCC-CC-hh--HHHHHHHhhccCCCcccHHHHHHh
Q psy6552 137 QDITNEDLLAAAKKLKIFGNGFSIIPIGQG---QY----LVQSI-PGE-LS-LD--HSLVLQQVASKNEAHISVSVLNNE 204 (254)
Q Consensus 137 ~~IS~~Di~rA~~~L~~Lg~g~~l~~~~sg---~~----vv~s~-p~e-ls-~D--~~~il~l~~~~~~g~vt~~~l~~~ 204 (254)
..||.+++.+-++.++..|.+-=+..+-.. .. -+... ... .+ .| ...+++++- ..+..|++.|+++
T Consensus 449 ~fvsd~ei~~vv~~~k~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~l~~~a~~~v~--~~~~~s~s~lqr~ 526 (574)
T 2iut_A 449 AFVSDDEVHRVVEAWKLRGAPDYIEDILAGVDEGGGGGGSFDGGDGSGEGSEDDPLYDEAVRFVT--ESRRASISAVQRK 526 (574)
T ss_dssp CBCCHHHHHHHHHHHHTTCCCCCCTTSCC---------------------------------------------------
T ss_pred CcCCHHHHHHHHHHHHhcCCCccchhhcccccccccccccccccccCCCCCcCCHHHHHHHHHHH--hcCCcCHHHHHHH
Confidence 368999999999999877644111011000 00 00000 000 01 12 234455555 3578999999999
Q ss_pred cCCCHHHHHHHHHHHHHcCcEEEeCC
Q psy6552 205 LNWSTERAQHALDFMVQEGYAWIDTQ 230 (254)
Q Consensus 205 l~ws~~ra~~~L~~l~~~G~lwvD~q 230 (254)
|.+-..||...+++|++.|++=--+.
T Consensus 527 ~~igynraar~~~~me~~giv~~~~~ 552 (574)
T 2iut_A 527 LKIGYNRAARMIEAMEMAGVVTPMNT 552 (574)
T ss_dssp --------------------------
T ss_pred hccChHHHHHHHHHHHHCCCCCCccC
Confidence 99999999999999999999855443
No 345
>1ldj_A Cullin homolog 1, CUL-1; cullin, ROC1, HRT1, zinc ring finger, ligase, ubiquitin, ubiquitination, SCF; 3.00A {Homo sapiens} SCOP: a.4.5.34 a.118.17.1 e.40.1.1 PDB: 1u6g_A 1ldk_A 1ldk_B 3rtr_A
Probab=31.91 E-value=1.4e+02 Score=29.53 Aligned_cols=83 Identities=13% Similarity=0.186 Sum_probs=59.1
Q ss_pred CCHHHHHHHHHHhhhh----------------CCCeEEEEeCCceEEEEccCCCCChhHHHHHHHhhccCCCcccHHHHH
Q psy6552 139 ITNEDLLAAAKKLKIF----------------GNGFSIIPIGQGQYLVQSIPGELSLDHSLVLQQVASKNEAHISVSVLN 202 (254)
Q Consensus 139 IS~~Di~rA~~~L~~L----------------g~g~~l~~~~sg~~vv~s~p~els~D~~~il~l~~~~~~g~vt~~~l~ 202 (254)
.=|..+..+++.++.. |.+---..++.+.+.+ ..|.-|..||-+-. +...+|.++|+
T Consensus 538 ~lP~~l~~~~~~F~~fY~~~~~~RkL~W~~~lg~~~l~~~~~~~~~~l-----~vs~~Qa~iLllFn--~~~~~t~~ei~ 610 (760)
T 1ldj_A 538 ALPSELERSYQRFTAFYASRHSGRKLTWLYQLSKGELVTNCFKNRYTL-----QASTFQMAILLQYN--TEDAYTVQQLT 610 (760)
T ss_dssp CCCGGGHHHHHHHHHHTTTTCTTCCEEECGGGCCCEEEESSSSSCCEE-----ECCHHHHHHHHGGG--SSSEEEHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHhCCCCeEEEecccccEEEEEEECCceEEE-----EEcHHHHHHHHHhc--CCCCcCHHHHH
Confidence 4488888888877654 2221112222122111 24667888887666 45789999999
Q ss_pred HhcCCCHHHHHHHHHHHHHcCcEEEe
Q psy6552 203 NELNWSTERAQHALDFMVQEGYAWID 228 (254)
Q Consensus 203 ~~l~ws~~ra~~~L~~l~~~G~lwvD 228 (254)
+.+|++....+..|.-+...|+|...
T Consensus 611 ~~t~i~~~~l~r~L~~l~k~~iL~~~ 636 (760)
T 1ldj_A 611 DSTQIKMDILAQVLQILLKSKLLVLE 636 (760)
T ss_dssp HHTCCCHHHHHHHHHHHHHTTTEECS
T ss_pred HHHCcCHHHHHHHHHHHHHCCcceeC
Confidence 99999999999999999999999854
No 346
>2k9l_A RNA polymerase sigma factor RPON; protein, transcription; NMR {Aquifex aeolicus}
Probab=31.90 E-value=93 Score=21.47 Aligned_cols=44 Identities=18% Similarity=0.144 Sum_probs=33.7
Q ss_pred HHHHHHhhhhhhhcCCc-eeHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHhhhh
Q psy6552 100 VQIVEVCLATNYKNGGL-ILLDELRTRLVKSRGKSLQHQDITNEDLLAAAKKLKIF 154 (254)
Q Consensus 100 vqive~c~~~r~~nGGi-i~L~dl~~~~nr~Rg~~~~~~~IS~~Di~rA~~~L~~L 154 (254)
+.|++++....+.+|=+ .++.++...+ .|++++|.++.+.++.|
T Consensus 31 ~~Ia~~iI~~LD~~GYL~~~l~eia~~l-----------~~~~~eve~vL~~lQ~~ 75 (76)
T 2k9l_A 31 QELALELLNYLNEKGFLSKSVEEISDVL-----------RCSVEELEKVRQKVLRL 75 (76)
T ss_dssp HHHHHHHHHHCTTSSTTCCCHHHHHHHH-----------TSCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcCCCCCCCCCHHHHHHHc-----------CCCHHHHHHHHHHHhcC
Confidence 46777888888888765 5677777654 26999999999998865
No 347
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=31.74 E-value=85 Score=22.76 Aligned_cols=41 Identities=24% Similarity=0.173 Sum_probs=32.7
Q ss_pred CCCChhHHHHHHHhhccCCCcccHHHHHHhcCCCHHHHHHHHHHH
Q psy6552 175 GELSLDHSLVLQQVASKNEAHISVSVLNNELNWSTERAQHALDFM 219 (254)
Q Consensus 175 ~els~D~~~il~l~~~~~~g~vt~~~l~~~l~ws~~ra~~~L~~l 219 (254)
..|+..+..|+.+.. .+.|..++++.+|++..-++..+..+
T Consensus 33 ~~Lt~re~~Vl~l~~----~G~s~~EIA~~L~iS~~TV~~~l~ri 73 (99)
T 1p4w_A 33 KRLSPKESEVLRLFA----EGFLVTEIAKKLNRSIKTISSQKKSA 73 (99)
T ss_dssp SSCCHHHHHHHHHHH----HTCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH----cCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 348888888888765 25789999999999998888777654
No 348
>2xns_C RGS14, regulator of G-protein signaling 14; hydrolase-peptide complex, ADP-ribosylation, arginine finger binding, lipoprotein, nucleotide-binding; HET: GDP SRT; 3.41A {Homo sapiens}
Probab=30.96 E-value=58 Score=20.11 Aligned_cols=32 Identities=19% Similarity=0.299 Sum_probs=22.2
Q ss_pred HHHHHHHHHhcCCCC--CCCCCCHHHHHHHHHHh
Q psy6552 120 DELRTRLVKSRGKSL--QHQDITNEDLLAAAKKL 151 (254)
Q Consensus 120 ~dl~~~~nr~Rg~~~--~~~~IS~~Di~rA~~~L 151 (254)
.+++.++||+-...+ ++.+++.+|+.||.--+
T Consensus 3 e~~~EllsraQs~radDQRGLL~KEdLv~~l~df 36 (40)
T 2xns_C 3 EGLVELLNRVQSSGAHDQRGLLSNEEVFRALRDF 36 (40)
T ss_dssp CHHHHHHHHHTTCSCCSCSSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccccccccccHHHHHHHhHHH
Confidence 356677787764432 23589999999997654
No 349
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=30.82 E-value=1e+02 Score=23.81 Aligned_cols=40 Identities=8% Similarity=0.020 Sum_probs=29.6
Q ss_pred CChhHHHHHHHhhccCCCcccHHHHHHhcCCCHHHHHHHHHHH
Q psy6552 177 LSLDHSLVLQQVASKNEAHISVSVLNNELNWSTERAQHALDFM 219 (254)
Q Consensus 177 ls~D~~~il~l~~~~~~g~vt~~~l~~~l~ws~~ra~~~L~~l 219 (254)
|+..+..|+.+.- ..+.|..++++.+|+|+.-++..|..+
T Consensus 141 L~~~~r~vl~l~~---~~g~s~~EIA~~lgis~~tV~~~l~ra 180 (194)
T 1or7_A 141 LPEDLRMAITLRE---LDGLSYEEIAAIMDCPVGTVRSRIFRA 180 (194)
T ss_dssp SCHHHHHHHHHHH---TTCCCHHHHHHHTTSCHHHHHHHHHHH
T ss_pred CCHHHHHHhHHHH---HcCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 5556666666654 236899999999999998777776654
No 350
>1jba_A GCAP-2, protein (guanylate cyclase activating protein 2); EF-hand, calcium-binding protein, guanylyl cyclase regulation, lyase; NMR {Bos taurus} SCOP: a.39.1.5
Probab=30.74 E-value=1.4e+02 Score=23.06 Aligned_cols=24 Identities=8% Similarity=0.188 Sum_probs=15.7
Q ss_pred HHHHHhhccCCCcccHHHHHHhcC
Q psy6552 183 LVLQQVASKNEAHISVSVLNNELN 206 (254)
Q Consensus 183 ~il~l~~~~~~g~vt~~~l~~~l~ 206 (254)
.++..+-....|.||..++...+.
T Consensus 152 ~~f~~~D~d~dG~Is~~Ef~~~~~ 175 (204)
T 1jba_A 152 RIFLLVDENGDGQLSLNEFVEGAR 175 (204)
T ss_dssp HHHHHHCCSCCSCBCHHHHHHHHT
T ss_pred HHHHHhCCCCCCeEcHHHHHHHHH
Confidence 334444323478999999987765
No 351
>3ro6_B Putative chloromuconate cycloisomerase; TIM barrel; 2.20A {Methylococcus capsulatus} PDB: 3rit_A
Probab=30.69 E-value=24 Score=31.59 Aligned_cols=79 Identities=14% Similarity=0.202 Sum_probs=49.9
Q ss_pred CCHHHHHHHHHHhhhhCCCeEEEEeCCceEEEEccCCCCChhHHHHHHHhhcc-CCCcccHHHHHHhcCCCHHHHHHHHH
Q psy6552 139 ITNEDLLAAAKKLKIFGNGFSIIPIGQGQYLVQSIPGELSLDHSLVLQQVASK-NEAHISVSVLNNELNWSTERAQHALD 217 (254)
Q Consensus 139 IS~~Di~rA~~~L~~Lg~g~~l~~~~sg~~vv~s~p~els~D~~~il~l~~~~-~~g~vt~~~l~~~l~ws~~ra~~~L~ 217 (254)
-+|+++.+.++.+... ||+.++++-|. ....|-..+-.+-+.- ..--+.++ -|-+|+...|.+.+.
T Consensus 139 ~~~~~~~~~a~~~~~~--G~~~~K~K~G~--------~~~~d~~~v~avR~~~g~~~~l~vD---an~~~~~~~a~~~~~ 205 (356)
T 3ro6_B 139 KPVEETLAEAREHLAL--GFRVLKVKLCG--------DEEQDFERLRRLHETLAGRAVVRVD---PNQSYDRDGLLRLDR 205 (356)
T ss_dssp CCHHHHHHHHHHHHHT--TCCEEEEECCS--------CHHHHHHHHHHHHHHHTTSSEEEEE---CTTCCCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHc--CCCEEEEEeCC--------CHHHHHHHHHHHHHHhCCCCEEEEe---CCCCCCHHHHHHHHH
Confidence 4789988888776553 57777776221 1333444443332211 01112222 367999999999999
Q ss_pred HHHHcCcEEEeCC
Q psy6552 218 FMVQEGYAWIDTQ 230 (254)
Q Consensus 218 ~l~~~G~lwvD~q 230 (254)
.|.+.|+.|+.+-
T Consensus 206 ~l~~~~i~~iEqP 218 (356)
T 3ro6_B 206 LVQELGIEFIEQP 218 (356)
T ss_dssp HHHHTTCCCEECC
T ss_pred HHHhcCCCEEECC
Confidence 9999999999864
No 352
>1zl8_A LIN-7; heterodimer, alpha helix, scaffold, assembly, specifici signaling, protein binding; NMR {Caenorhabditis elegans} SCOP: a.194.1.1
Probab=30.68 E-value=27 Score=23.09 Aligned_cols=15 Identities=7% Similarity=0.082 Sum_probs=13.0
Q ss_pred HHHHHHHHHHhhhhC
Q psy6552 141 NEDLLAAAKKLKIFG 155 (254)
Q Consensus 141 ~~Di~rA~~~L~~Lg 155 (254)
..||-|||++|+.|.
T Consensus 6 ~RDv~RaiELle~lq 20 (53)
T 1zl8_A 6 ERDVQRILELMEHVQ 20 (53)
T ss_dssp HHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHHH
Confidence 469999999999985
No 353
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=30.47 E-value=96 Score=26.17 Aligned_cols=48 Identities=8% Similarity=0.045 Sum_probs=36.2
Q ss_pred CChhHHHHHHHhhccCCCcccHHHHHH----hcC--CCHHHHHHHHHHHHHcCcEEEe
Q psy6552 177 LSLDHSLVLQQVASKNEAHISVSVLNN----ELN--WSTERAQHALDFMVQEGYAWID 228 (254)
Q Consensus 177 ls~D~~~il~l~~~~~~g~vt~~~l~~----~l~--ws~~ra~~~L~~l~~~G~lwvD 228 (254)
++..+..++..+. . |. +..+|+. ..| .+...+...|+.|++.|++..+
T Consensus 288 l~~~~~~~l~~la--~-g~-~~~~l~~~~~~~~g~~~~~~~~~~~L~~L~~~gli~~~ 341 (357)
T 2fna_A 288 ARKRYLNIMRTLS--K-CG-KWSDVKRALELEEGIEISDSEIYNYLTQLTKHSWIIKE 341 (357)
T ss_dssp GHHHHHHHHHHHT--T-CB-CHHHHHHHHHHHHCSCCCHHHHHHHHHHHHHTTSEEES
T ss_pred ccHHHHHHHHHHH--c-CC-CHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEEec
Confidence 4445566666666 3 55 8888874 457 8888999999999999998765
No 354
>3cs1_A Flagellar calcium-binding protein; myristoylated, palmitoylated, SEN membrane targeting, EF-hand, cell projection, cilium; 2.00A {Trypanosoma cruzi}
Probab=29.78 E-value=1.2e+02 Score=24.15 Aligned_cols=15 Identities=27% Similarity=0.306 Sum_probs=11.1
Q ss_pred CCCCHHHHHHHHHHh
Q psy6552 137 QDITNEDLLAAAKKL 151 (254)
Q Consensus 137 ~~IS~~Di~rA~~~L 151 (254)
..||.+++.+++..+
T Consensus 145 G~Is~~El~~~l~~~ 159 (219)
T 3cs1_A 145 MLVDEEEFKRAVPKL 159 (219)
T ss_dssp SEEEHHHHHHHHHHH
T ss_pred CcCcHHHHHHHHHHh
Confidence 368888888877765
No 355
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=29.72 E-value=1.1e+02 Score=24.38 Aligned_cols=40 Identities=18% Similarity=0.128 Sum_probs=29.3
Q ss_pred CChhHHHHHHHhhccCCCcccHHHHHHhcCCCHHHHHHHHHHH
Q psy6552 177 LSLDHSLVLQQVASKNEAHISVSVLNNELNWSTERAQHALDFM 219 (254)
Q Consensus 177 ls~D~~~il~l~~~~~~g~vt~~~l~~~l~ws~~ra~~~L~~l 219 (254)
|+..+..|+.+.- ..+.|..++++.+|+|...++..+..+
T Consensus 188 L~~~~r~vl~l~~---~~g~s~~EIA~~lgis~~~V~~~~~ra 227 (239)
T 1rp3_A 188 LPEREKLVIQLIF---YEELPAKEVAKILETSVSRVSQLKAKA 227 (239)
T ss_dssp SCHHHHHHHHHHH---TSCCCHHHHHHHTTSCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH---hcCCCHHHHHHHhCCCHHHHHHHHHHH
Confidence 5656666666654 346899999999999998777666543
No 356
>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A*
Probab=29.72 E-value=75 Score=28.79 Aligned_cols=79 Identities=18% Similarity=0.138 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHcCCCcccCCCccccccccchhHHHHHHHHHHHhhhhhhh-cCCceeHHHHHHHHHHhcCCCCCCCCC
Q psy6552 61 AQFRRHFQEMCASIGVDPLASRKGFWSLLGMGDFYYELSVQIVEVCLATNYK-NGGLILLDELRTRLVKSRGKSLQHQDI 139 (254)
Q Consensus 61 p~fr~~f~~mc~~lGVdPl~s~kg~w~~lg~gdfy~eLavqive~c~~~r~~-nGGii~L~dl~~~~nr~Rg~~~~~~~I 139 (254)
.+|..-+..++..+|.+|-... .+....-++-+....+. ..|.|+..|....+.... ...
T Consensus 355 ~El~~~l~~~~~~~g~~~~~~~-------------~~~~~~~~~~~~~~~D~d~~g~i~~~Ef~~~~~~~~------~~~ 415 (484)
T 3nyv_A 355 AELIEGYKELMRMKGQDASMLD-------------ASAVEHEVDQVLDAVDFDKNGYIEYSEFVTVAMDRK------TLL 415 (484)
T ss_dssp HHHHHHHHHHHC----CGGGCS-------------HHHHHHHHHHHHHHHTCCTTSEEEHHHHHHHHHHHH------HHH
T ss_pred HHHHHHHHHHhhhccccccccc-------------ccccHHHHHHHHHHhCCCCCCeEeHHHHHHHHHhcc------ccC
Confidence 3454455666666666644210 11122223333333444 358899999887776542 345
Q ss_pred CHHHHHHHHHHhhhhCCCe
Q psy6552 140 TNEDLLAAAKKLKIFGNGF 158 (254)
Q Consensus 140 S~~Di~rA~~~L~~Lg~g~ 158 (254)
+++++.+|.+.+..=|.|+
T Consensus 416 ~~~~~~~~F~~~D~d~dG~ 434 (484)
T 3nyv_A 416 SRERLERAFRMFDSDNSGK 434 (484)
T ss_dssp HHHHHHHHHHHHCTTCCSE
T ss_pred cHHHHHHHHHHHCCCCCCc
Confidence 6777888877776666554
No 357
>3r0u_A Enzyme of enolase superfamily; structural genomics, putative epimerase, PSI-biolog YORK structural genomics research consortium; HET: MSE TAR; 1.90A {Francisella philomiragia subsp} PDB: 3px5_A* 3r0k_A* 3r10_A 3r11_A 3r1z_A*
Probab=29.14 E-value=36 Score=30.87 Aligned_cols=77 Identities=9% Similarity=0.142 Sum_probs=50.3
Q ss_pred CCHHHHHHHHHHhhhhCCCeEEEEeCCceEEEEccCCCCChhHHHHHHHhhccCCC---cccHHHHHHhcCCCHHHHHHH
Q psy6552 139 ITNEDLLAAAKKLKIFGNGFSIIPIGQGQYLVQSIPGELSLDHSLVLQQVASKNEA---HISVSVLNNELNWSTERAQHA 215 (254)
Q Consensus 139 IS~~Di~rA~~~L~~Lg~g~~l~~~~sg~~vv~s~p~els~D~~~il~l~~~~~~g---~vt~~~l~~~l~ws~~ra~~~ 215 (254)
-+|+++.+.++..... ||+.++++-|. ....|-..|-.+.+. -| -+.++ .|-+|+..-|...
T Consensus 141 ~~~e~~~~~a~~~~~~--Gf~~~KlK~g~--------~~~~d~~~v~avR~a--~g~~~~L~vD---aN~~w~~~~A~~~ 205 (379)
T 3r0u_A 141 GNVAETIQNIQNGVEA--NFTAIKVKTGA--------DFNRDIQLLKALDNE--FSKNIKFRFD---ANQGWNLAQTKQF 205 (379)
T ss_dssp CCHHHHHHHHHHHHHT--TCCEEEEECSS--------CHHHHHHHHHHHHHH--CCTTSEEEEE---CTTCCCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHc--CCCEEeeecCC--------CHHHHHHHHHHHHHh--cCCCCeEEEe---CCCCcCHHHHHHH
Confidence 4789888877776543 68887776221 134444444333332 22 22222 4679999999999
Q ss_pred HHHHHH--cCcEEEeCC
Q psy6552 216 LDFMVQ--EGYAWIDTQ 230 (254)
Q Consensus 216 L~~l~~--~G~lwvD~q 230 (254)
++.|.. -|+.|+.+-
T Consensus 206 ~~~l~~~~~~l~~iEeP 222 (379)
T 3r0u_A 206 IEEINKYSLNVEIIEQP 222 (379)
T ss_dssp HHHHHTSCCCEEEEECC
T ss_pred HHHHhhcCCCcEEEECC
Confidence 999998 799999864
No 358
>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B
Probab=29.01 E-value=1.1e+02 Score=22.26 Aligned_cols=43 Identities=12% Similarity=0.125 Sum_probs=32.1
Q ss_pred CChhHHHHHHHhhcc-CCCcccHHHHHHhcCCCHHHHHHHHHHH
Q psy6552 177 LSLDHSLVLQQVASK-NEAHISVSVLNNELNWSTERAQHALDFM 219 (254)
Q Consensus 177 ls~D~~~il~l~~~~-~~g~vt~~~l~~~l~ws~~ra~~~L~~l 219 (254)
|++.+..|+.+--.. +....|..++++.+|+|..+++..+..+
T Consensus 20 Lp~reR~Vi~Lry~l~~~e~~s~~EIA~~lgiS~~tVr~~~~rA 63 (99)
T 3t72_q 20 LTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKA 63 (99)
T ss_pred CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 666677777765411 1246999999999999999999887664
No 359
>3dtp_E RLC, myosin regulatory light chain; muscle protein, smooth muscle, myosin subfragment 2, heavy meromyosin, essential light chain; 20.00A {Avicularia avicularia}
Probab=28.92 E-value=1.3e+02 Score=23.48 Aligned_cols=15 Identities=13% Similarity=0.062 Sum_probs=11.0
Q ss_pred HHHHHHHHHcCCCcc
Q psy6552 65 RHFQEMCASIGVDPL 79 (254)
Q Consensus 65 ~~f~~mc~~lGVdPl 79 (254)
.+|..++..+|++|-
T Consensus 77 ~el~~~l~~lg~~~~ 91 (196)
T 3dtp_E 77 NDIRATFDSLGRLCT 91 (196)
T ss_dssp HHHHHHHHTTSCCCC
T ss_pred HHHHHHHHHhCCCCC
Confidence 467788888887653
No 360
>1taf_A TFIID TBP associated factor 42; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=28.67 E-value=1.1e+02 Score=21.11 Aligned_cols=14 Identities=21% Similarity=0.259 Sum_probs=12.4
Q ss_pred CCCCHHHHHHHHHH
Q psy6552 137 QDITNEDLLAAAKK 150 (254)
Q Consensus 137 ~~IS~~Di~rA~~~ 150 (254)
..|+.+||.-|++.
T Consensus 52 ktv~~eDVkLAi~~ 65 (68)
T 1taf_A 52 KTIDLDDVRLATEV 65 (68)
T ss_dssp SSBCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHh
Confidence 47999999999985
No 361
>2w7n_A TRFB transcriptional repressor protein; INCP, plasmid, repressor, DNA-binding, transcription/DNA; HET: BRU; 1.85A {Escherichia coli}
Probab=28.56 E-value=78 Score=23.53 Aligned_cols=27 Identities=7% Similarity=0.053 Sum_probs=23.3
Q ss_pred CcccHHHHHHhcCCCHHHHHHHHHHHH
Q psy6552 194 AHISVSVLNNELNWSTERAQHALDFMV 220 (254)
Q Consensus 194 g~vt~~~l~~~l~ws~~ra~~~L~~l~ 220 (254)
.+.|..++++.+|+|.......|..+-
T Consensus 33 ~g~tQ~eIA~~lGiSR~~VsrlL~~Ar 59 (101)
T 2w7n_A 33 DGKPQATFATSLGLTRGAVSQAVHRVW 59 (101)
T ss_dssp TCCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 468999999999999998888887754
No 362
>3b09_A Peptidyl-prolyl CIS-trans isomerase; Val-Leu zipper, helices, chaperone; 1.90A {Shewanella}
Probab=28.44 E-value=1.6e+02 Score=21.03 Aligned_cols=54 Identities=19% Similarity=0.143 Sum_probs=39.8
Q ss_pred hhHHHHHHHHHHHhhhhhhhcCCc-eeHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHhh
Q psy6552 93 DFYYELSVQIVEVCLATNYKNGGL-ILLDELRTRLVKSRGKSLQHQDITNEDLLAAAKKLK 152 (254)
Q Consensus 93 dfy~eLavqive~c~~~r~~nGGi-i~L~dl~~~~nr~Rg~~~~~~~IS~~Di~rA~~~L~ 152 (254)
..-|-|+.+|..-+.. +|-- +.++.+..-+.-+..... ..+|++++.+++..+.
T Consensus 31 K~SYaIG~~mG~~L~~----~g~~~lD~dav~~Gl~Dal~Gk~--~~ls~eei~~~l~~~~ 85 (88)
T 3b09_A 31 HASYGVGRQMGEQLAA----NSFEGIDIPAVQAGLADAFAGKE--SAVSMEELQVAFTEIS 85 (88)
T ss_dssp HHHHHHHHHHHHHHHH----SCCTTCCHHHHHHHHHHHHTTCC--CSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh----CCccccCHHHHHHHHHHHHcCCC--CCCCHHHHHHHHHHHH
Confidence 4667888888876643 2211 689999999988775433 4799999999998775
No 363
>3ncv_A DNA mismatch repair protein MUTL; endonuclease, dimer, hydrolase; HET: DNA; 2.40A {Neisseria gonorrhoeae}
Probab=28.42 E-value=49 Score=27.85 Aligned_cols=90 Identities=16% Similarity=0.108 Sum_probs=57.2
Q ss_pred CCCHHHHHHHHHHhhhh-CCCeEEEEeCCceEEEEccCCCCCh-h-HHHHHHHhhcc-CCCc-c-c---HHHHHH-----
Q psy6552 138 DITNEDLLAAAKKLKIF-GNGFSIIPIGQGQYLVQSIPGELSL-D-HSLVLQQVASK-NEAH-I-S---VSVLNN----- 203 (254)
Q Consensus 138 ~IS~~Di~rA~~~L~~L-g~g~~l~~~~sg~~vv~s~p~els~-D-~~~il~l~~~~-~~g~-v-t---~~~l~~----- 203 (254)
.+|+.|....-+..+.| ..||.+..+|.+...|+++|..+.. | ...+.+++... ..|. . . ..++..
T Consensus 88 ~Ls~~e~~~l~~~~~~L~~lGf~ie~fg~~~v~V~~vP~~l~~~d~~~ll~~ll~~l~~~~~~~~~~~~~~~~~as~ACr 167 (220)
T 3ncv_A 88 AASHEECAALADHAETLAGFGLELSDMGGNTLAVRAAPVMLGKSDVVSLARDVLGELAQVGSSQTIASHENRILATMSCH 167 (220)
T ss_dssp ECCHHHHHHHHHHHHHHHHTTCEEECCSTTEEEEEEEETTSCCSCHHHHHHHHHHHHTTCC-----CTTHHHHHHHHTTC
T ss_pred EcCHHHHHHHHHHHHHHHhCCCEEEECCCCEEEEEEcCcccCCCCHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHH
Confidence 48999988777777777 4779998998788999999976653 2 33333443321 1121 1 1 112211
Q ss_pred -----hcCCCHHHHHHHHHHHHHcCcEEE
Q psy6552 204 -----ELNWSTERAQHALDFMVQEGYAWI 227 (254)
Q Consensus 204 -----~l~ws~~ra~~~L~~l~~~G~lwv 227 (254)
.-.|+..-++..|++|.+...-|-
T Consensus 168 ~AIk~g~~Ls~~Em~~Ll~~L~~~~~P~~ 196 (220)
T 3ncv_A 168 GSIRAGRRLTLPEMNALLRDMENTPRSNQ 196 (220)
T ss_dssp SSSCSSCCCCHHHHHHHHHHHHTSTTTTB
T ss_pred hhhhcCCCCCHHHHHHHHHHHHhCCCCCc
Confidence 236899999999999887655443
No 364
>1r42_A Angiotensin I converting enzyme 2; zinc metallopeptidase domain, Na open conformation, chloride ION binding site; HET: NAG; 2.20A {Homo sapiens} SCOP: d.92.1.5 PDB: 1r4l_A* 3sci_A 3scj_A 2ajf_A* 3kbh_A* 3d0g_A* 3d0h_A* 3d0i_A* 3sck_A 3scl_A
Probab=28.31 E-value=1.1e+02 Score=29.37 Aligned_cols=64 Identities=17% Similarity=0.212 Sum_probs=43.8
Q ss_pred HHHHHHHHcCCC-cccCCCccccccccchhH--HHHHHHHHHHhhhhhhhcCCceeHHHHHHHHHHhcCCCCCCCCCCHH
Q psy6552 66 HFQEMCASIGVD-PLASRKGFWSLLGMGDFY--YELSVQIVEVCLATNYKNGGLILLDELRTRLVKSRGKSLQHQDITNE 142 (254)
Q Consensus 66 ~f~~mc~~lGVd-Pl~s~kg~w~~lg~gdfy--~eLavqive~c~~~r~~nGGii~L~dl~~~~nr~Rg~~~~~~~IS~~ 142 (254)
-|..||..+|++ ||.. +||| .+++..+-.+|. -||-.+..|++..+. |. ..++++
T Consensus 525 ~~~~~~~~~~~~~~l~~----------~d~~~~~~~~~~l~~i~~-----~G~s~~~~ell~~~t---G~----~~~~~~ 582 (615)
T 1r42_A 525 FQEALCQAAKHEGPLHK----------CDISNSTEAGQKLFNMLR-----LGKSEPWTLALENVV---GA----KNMNVR 582 (615)
T ss_dssp HHHHHHHTTTCCSCGGG----------CCCTTCHHHHHHHHHHHT-----TTTSSCHHHHHHHHH---SS----SSCCSH
T ss_pred HHHHHHHhccccCCccc----------ccccCCHHHHHHHHHHHh-----CcCCCCHHHHHHHhc---CC----CCCChH
Confidence 456777777887 7763 6776 666666665554 499999999887765 33 467888
Q ss_pred HHHHHHHHh
Q psy6552 143 DLLAAAKKL 151 (254)
Q Consensus 143 Di~rA~~~L 151 (254)
-+++=++-|
T Consensus 583 ~l~~y~~pl 591 (615)
T 1r42_A 583 PLLNYFEPL 591 (615)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 776655544
No 365
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=28.04 E-value=1.2e+02 Score=22.72 Aligned_cols=58 Identities=12% Similarity=0.092 Sum_probs=42.3
Q ss_pred HHHHHHHhhhhhhhcCCceeHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHhhhhCCCeEEEEeCCce
Q psy6552 99 SVQIVEVCLATNYKNGGLILLDELRTRLVKSRGKSLQHQDITNEDLLAAAKKLKIFGNGFSIIPIGQGQ 167 (254)
Q Consensus 99 avqive~c~~~r~~nGGii~L~dl~~~~nr~Rg~~~~~~~IS~~Di~rA~~~L~~Lg~g~~l~~~~sg~ 167 (254)
-..|.+++.. +++-++..||+..+.+.- +.||+.=|.|.++.|...|.=- -+.+++|.
T Consensus 13 R~~Il~~l~~----~~~~~sa~ei~~~l~~~~------~~is~~TVYR~L~~L~e~Glv~-~~~~~~~~ 70 (131)
T 2o03_A 13 RAAISTLLET----LDDFRSAQELHDELRRRG------ENIGLTTVYRTLQSMASSGLVD-TLHTDTGE 70 (131)
T ss_dssp HHHHHHHHHH----CCSCEEHHHHHHHHHHTT------CCCCHHHHHHHHHHHHTTTSEE-EEECTTSC
T ss_pred HHHHHHHHHh----CCCCCCHHHHHHHHHHhC------CCCCHhhHHHHHHHHHHCCCEE-EEEeCCCc
Confidence 3456666653 466899999999998752 4799999999999999998533 33444343
No 366
>1q80_A SCP, sarcoplasmic calcium-binding protein; all-alpha, metal binding protein; NMR {Neanthes diversicolor} SCOP: a.39.1.5 PDB: 2scp_A
Probab=27.77 E-value=1.8e+02 Score=21.38 Aligned_cols=23 Identities=9% Similarity=0.193 Sum_probs=13.3
Q ss_pred HHHHHHhhccCCCcccHHHHHHh
Q psy6552 182 SLVLQQVASKNEAHISVSVLNNE 204 (254)
Q Consensus 182 ~~il~l~~~~~~g~vt~~~l~~~ 204 (254)
..++..+.....|.||-.+....
T Consensus 131 ~~~~~~~D~d~dg~i~~~ef~~~ 153 (174)
T 1q80_A 131 PASFDAIDTNNDGLLSLEEFVIA 153 (174)
T ss_dssp HHHHHHHCTTCSSSBCHHHHHHH
T ss_pred HHHHHHhCCCCCceEeHHHHHHH
Confidence 34455443324688888877543
No 367
>1nya_A Calerythrin; EF-hand, metal binding protein; NMR {Saccharopolyspora erythraea} SCOP: a.39.1.5
Probab=27.63 E-value=1.8e+02 Score=21.36 Aligned_cols=47 Identities=26% Similarity=0.296 Sum_probs=27.9
Q ss_pred HHHhhhhhhhc-CCceeHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHhhhhCCC
Q psy6552 103 VEVCLATNYKN-GGLILLDELRTRLVKSRGKSLQHQDITNEDLLAAAKKLKIFGNG 157 (254)
Q Consensus 103 ve~c~~~r~~n-GGii~L~dl~~~~nr~Rg~~~~~~~IS~~Di~rA~~~L~~Lg~g 157 (254)
+..+....+.+ .|.|+..|+...+... . +|++++...++.+..=|.|
T Consensus 104 ~~~~F~~~D~d~~G~I~~~e~~~~l~~~-------g-~~~~~~~~~~~~~D~d~dg 151 (176)
T 1nya_A 104 VKGIVGMCDKNADGQINADEFAAWLTAL-------G-MSKAEAAEAFNQVDTNGNG 151 (176)
T ss_dssp HHHHHHHTCSSCCSEEEHHHHHHHHHHT-------T-CCHHHHHHHHHHHCTTCSS
T ss_pred HHHHHHHhcCCCCCCCCHHHHHHHHHHh-------C-CCHHHHHHHHHHhCCCCCC
Confidence 33334444443 4788888887777653 2 5777777766666543433
No 368
>3g9k_L Capsule biosynthesis protein CAPD; CAPD protein, the great lakes regional C excellence, GLRCE, capsule biogenesis/degradation; HET: GLU; 1.79A {Bacillus anthracis} PDB: 3ga9_L*
Probab=27.40 E-value=23 Score=31.97 Aligned_cols=27 Identities=22% Similarity=0.414 Sum_probs=21.4
Q ss_pred ccchhHH-HHHHHHHHHhhhhhhhcCCceeHHHHHHH
Q psy6552 90 GMGDFYY-ELSVQIVEVCLATNYKNGGLILLDELRTR 125 (254)
Q Consensus 90 g~gdfy~-eLavqive~c~~~r~~nGGii~L~dl~~~ 125 (254)
|...||. ++|.+|++. |+||+.||-..
T Consensus 189 G~~~FY~G~iA~~iv~~---------G~lt~~DLa~y 216 (323)
T 3g9k_L 189 GAKGFYEGGVARAISKT---------AKISLEDIKGY 216 (323)
T ss_dssp TTHHHHSHHHHHHHHHH---------HTCCHHHHHTC
T ss_pred CcccccCCHHHHHHHHc---------CCCCHHHHhhC
Confidence 4557887 799999997 89998887643
No 369
>3b0c_W CENP-W, centromere protein W; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_W* 3vh5_W 3vh6_W
Probab=26.82 E-value=92 Score=21.52 Aligned_cols=16 Identities=38% Similarity=0.331 Sum_probs=13.5
Q ss_pred CCCCHHHHHHHHHHhh
Q psy6552 137 QDITNEDLLAAAKKLK 152 (254)
Q Consensus 137 ~~IS~~Di~rA~~~L~ 152 (254)
-.|+++||..|++.+-
T Consensus 56 KTI~~~dI~~A~~~ll 71 (76)
T 3b0c_W 56 KIIKPEHTIAAAKVIL 71 (76)
T ss_dssp SSBCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH
Confidence 3699999999998763
No 370
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=26.63 E-value=1.1e+02 Score=24.03 Aligned_cols=65 Identities=6% Similarity=0.069 Sum_probs=46.9
Q ss_pred HHHHHHHHHcCCCcccCCCccccccccchhHHHHHHHHHHHhhhhhhhcCCceeHHHHHHHHHHh--cCCCCCCCCCCHH
Q psy6552 65 RHFQEMCASIGVDPLASRKGFWSLLGMGDFYYELSVQIVEVCLATNYKNGGLILLDELRTRLVKS--RGKSLQHQDITNE 142 (254)
Q Consensus 65 ~~f~~mc~~lGVdPl~s~kg~w~~lg~gdfy~eLavqive~c~~~r~~nGGii~L~dl~~~~nr~--Rg~~~~~~~IS~~ 142 (254)
.+|.++|..-|+-+ |.. -..|.+++.. +++=++..|||..+.+. - ..||+.
T Consensus 18 ~~~~~~L~~~g~r~-T~q----------------R~~IL~~L~~----~~~h~sA~eI~~~l~~~~~~------~~is~a 70 (162)
T 4ets_A 18 ERFKKILRQGGLKY-TKQ----------------REVLLKTLYH----SDTHYTPESLYMEIKQAEPD------LNVGIA 70 (162)
T ss_dssp HHHHHHHHHHTCCC-CHH----------------HHHHHHHHHS----CCSCBCHHHHHHHHHHHCGG------GCCCHH
T ss_pred HHHHHHHHHcCCCC-CHH----------------HHHHHHHHHh----CCCCCCHHHHHHHHHhhcCC------CCCCHH
Confidence 45666666666653 211 2356666654 35789999999999875 3 469999
Q ss_pred HHHHHHHHhhhhCC
Q psy6552 143 DLLAAAKKLKIFGN 156 (254)
Q Consensus 143 Di~rA~~~L~~Lg~ 156 (254)
=|+|+++.|...|.
T Consensus 71 TVYRtL~~L~e~Gl 84 (162)
T 4ets_A 71 TVYRTLNLLEEAEM 84 (162)
T ss_dssp HHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHCCC
Confidence 99999999999985
No 371
>1n93_X P40 nucleoprotein; RNA virus nucleoprotein tetramer, viral protein; 1.76A {Borna disease virus} SCOP: a.206.1.1 PDB: 1pp1_X*
Probab=26.53 E-value=93 Score=27.64 Aligned_cols=43 Identities=19% Similarity=0.276 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhcC-HHHHHHHHHHHHHcCC
Q psy6552 34 QLSQHLNTFRDKLESFASEYKNEIKKD-AQFRRHFQEMCASIGV 76 (254)
Q Consensus 34 ~L~~ql~~fk~~L~~FA~kh~~~I~~d-p~fr~~f~~mc~~lGV 76 (254)
+++..+..+++.|.-.|.--.+.|..+ .+..++|+.|+++||=
T Consensus 137 e~SSI~~HCC~LLIGv~~gSS~kI~t~s~QvqrrFKamMasi~R 180 (375)
T 1n93_X 137 EISSIFSHCCSLLIGVVIGSSSKIKAGAEQIKKRFKTMMAALNR 180 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSHHHHSCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHhhhhcCCccccccHHHHHHHHHHHHHHcCC
Confidence 577889999998888888888889866 5789999999999994
No 372
>1w7j_B Myosin light chain 1; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Homo sapiens} SCOP: a.39.1.5 PDB: 1w7i_B* 1oe9_B* 3j04_C 1br1_B* 1br4_B* 1i84_T* 3dtp_C 2w4a_C 2w4g_C 2w4h_C
Probab=26.43 E-value=33 Score=25.19 Aligned_cols=17 Identities=6% Similarity=0.022 Sum_probs=10.6
Q ss_pred cCCceeHHHHHHHHHHh
Q psy6552 113 NGGLILLDELRTRLVKS 129 (254)
Q Consensus 113 nGGii~L~dl~~~~nr~ 129 (254)
..|.|+..|....+...
T Consensus 61 ~~g~i~~~eF~~~~~~~ 77 (151)
T 1w7j_B 61 KSRRVDFETFLPMLQAV 77 (151)
T ss_dssp TTCEEEHHHHHHHHHHH
T ss_pred CCCcCcHHHHHHHHHHH
Confidence 35667777766666554
No 373
>1k2h_A S100A1, S-100 protein, alpha chain; non-covalent homodimer, X-type four-helix bundle, metal binding protein; NMR {Rattus norvegicus} SCOP: a.39.1.2 PDB: 1zfs_A 2k2f_A 2kbm_A 2l0p_A 2jpt_A
Probab=26.33 E-value=1.1e+02 Score=20.44 Aligned_cols=13 Identities=23% Similarity=0.199 Sum_probs=7.5
Q ss_pred ceeHHHHHHHHHH
Q psy6552 116 LILLDELRTRLVK 128 (254)
Q Consensus 116 ii~L~dl~~~~nr 128 (254)
.|+..|+...+..
T Consensus 27 ~I~~~el~~~l~~ 39 (93)
T 1k2h_A 27 KLSKKELKDLLQT 39 (93)
T ss_dssp SCCHHHHHHHHHH
T ss_pred ccCHHHHHHHHHH
Confidence 6666666555554
No 374
>1xma_A Predicted transcriptional regulator; southea collaboratory for structural genomics, secsg, protein struc initiative, PSI; 2.30A {Clostridium thermocellum} SCOP: a.4.5.61
Probab=26.25 E-value=1e+02 Score=23.89 Aligned_cols=46 Identities=9% Similarity=0.082 Sum_probs=34.9
Q ss_pred HHHHHHHhhccCCCcccHHHHHHhc--------CCCHHHHHHHHHHHHHcCcEEEeC
Q psy6552 181 HSLVLQQVASKNEAHISVSVLNNEL--------NWSTERAQHALDFMVQEGYAWIDT 229 (254)
Q Consensus 181 ~~~il~l~~~~~~g~vt~~~l~~~l--------~ws~~ra~~~L~~l~~~G~lwvD~ 229 (254)
+..||.+.. . +-.+..+|++.+ +.+..-.-..|..|+++|++-+..
T Consensus 43 ~~~IL~~L~--~-~~~~gyeI~~~l~~~~~~~~~is~gtLy~~L~rLE~~GlI~~~~ 96 (145)
T 1xma_A 43 DTIILSLLI--E-GDSYGYEISKNIRIKTDELYVIKETTLYSAFARLEKNGYIKSYY 96 (145)
T ss_dssp HHHHHHHHH--H-CCEEHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHH--h-CCCCHHHHHHHHHHhhCCccCcChhHHHHHHHHHHHCCCEEEEE
Confidence 556666665 1 457777777766 689999999999999999996653
No 375
>2ovk_B RLC, myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, contractIle protein; 2.60A {Todarodes pacificus} PDB: 2ekv_B 2ekw_B 2oy6_B* 3i5f_B* 3i5g_B 3i5h_B 3i5i_B
Probab=26.14 E-value=93 Score=22.74 Aligned_cols=34 Identities=24% Similarity=0.348 Sum_probs=18.1
Q ss_pred CCceeHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHhhh
Q psy6552 114 GGLILLDELRTRLVKSRGKSLQHQDITNEDLLAAAKKLKI 153 (254)
Q Consensus 114 GGii~L~dl~~~~nr~Rg~~~~~~~IS~~Di~rA~~~L~~ 153 (254)
.|.|+..|+...+... | ..+|++++...++.+..
T Consensus 99 ~G~I~~~el~~~l~~~-g-----~~~~~~~~~~~~~~~d~ 132 (153)
T 2ovk_B 99 QGFIPEDYLKDLLENM-G-----DNFSKEEIKNVWKDAPL 132 (153)
T ss_dssp SSCCCHHHHHHHHHHS-S-----SCCCHHHHHHHHHHCCE
T ss_pred CCeEcHHHHHHHHHHc-C-----CCCCHHHHHHHHHHcCC
Confidence 4566666665555542 1 24566665555555544
No 376
>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A*
Probab=26.08 E-value=47 Score=30.45 Aligned_cols=51 Identities=24% Similarity=0.249 Sum_probs=35.1
Q ss_pred HHHHhhhhhhh-cCCceeHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHhhhhCCCe
Q psy6552 102 IVEVCLATNYK-NGGLILLDELRTRLVKSRGKSLQHQDITNEDLLAAAKKLKIFGNGF 158 (254)
Q Consensus 102 ive~c~~~r~~-nGGii~L~dl~~~~nr~Rg~~~~~~~IS~~Di~rA~~~L~~Lg~g~ 158 (254)
.++-+....+. ..|.|+..|....+.+.. ...+++++.+|.+.+..=|.|+
T Consensus 391 ~~~~~~~~~D~d~~G~I~~~EF~~~~~~~~------~~~~~~~~~~~F~~~D~d~~G~ 442 (494)
T 3lij_A 391 EVDAILGAADFDRNGYIDYSEFVTVAMDRK------SLLSKDKLESAFQKFDQDGNGK 442 (494)
T ss_dssp HHHHHHHHHCTTCSSSEEHHHHHHHHSCHH------HHTCHHHHHHHHHHHCTTCSSE
T ss_pred HHHHHHHHhCCCCCCcCcHHHHHHHHHhhh------ccccHHHHHHHHHHHCCCCCCc
Confidence 33444444444 458999999988776542 3567888999888888777664
No 377
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=25.98 E-value=90 Score=21.70 Aligned_cols=41 Identities=10% Similarity=0.071 Sum_probs=33.2
Q ss_pred CCChhHHHHHHHhhccCCCcccHHHHHHhcCCCHHHHHHHHHHHH
Q psy6552 176 ELSLDHSLVLQQVASKNEAHISVSVLNNELNWSTERAQHALDFMV 220 (254)
Q Consensus 176 els~D~~~il~l~~~~~~g~vt~~~l~~~l~ws~~ra~~~L~~l~ 220 (254)
.|+..+..|+.+.. .+.|..++++.+|+|..-++..+..+.
T Consensus 29 ~Lt~~e~~vl~l~~----~g~s~~eIA~~l~is~~tV~~~l~r~~ 69 (91)
T 2rnj_A 29 MLTEREMEILLLIA----KGYSNQEIASASHITIKTVKTHVSNIL 69 (91)
T ss_dssp GCCSHHHHHHHHHH----TTCCTTHHHHHHTCCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHH----cCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 47777888887753 258999999999999999998887753
No 378
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=25.84 E-value=1.4e+02 Score=20.03 Aligned_cols=47 Identities=17% Similarity=0.244 Sum_probs=36.6
Q ss_pred HHHHHhhhhhhhcCCceeHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHhhhhCC
Q psy6552 101 QIVEVCLATNYKNGGLILLDELRTRLVKSRGKSLQHQDITNEDLLAAAKKLKIFGN 156 (254)
Q Consensus 101 qive~c~~~r~~nGGii~L~dl~~~~nr~Rg~~~~~~~IS~~Di~rA~~~L~~Lg~ 156 (254)
.|.+++.. ..|+-++..||+..+.+.- ..||+.=|.|.++.|+..|.
T Consensus 21 ~IL~~l~~---~~~~~~s~~el~~~l~~~~------~~is~~TVyR~L~~L~~~Gl 67 (83)
T 2fu4_A 21 KILEVLQE---PDNHHVSAEDLYKRLIDMG------EEIGLATVYRVLNQFDDAGI 67 (83)
T ss_dssp HHHHHHTS---GGGSSBCHHHHHHHHHHTT------CCCCHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHh---CCCCCCCHHHHHHHHHHhC------CCCCHhhHHHHHHHHHHCCC
Confidence 56665543 2336799999999997742 46999999999999999984
No 379
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=25.74 E-value=1.7e+02 Score=21.51 Aligned_cols=39 Identities=15% Similarity=0.103 Sum_probs=29.2
Q ss_pred CChhHHHHHHHhhccCCCcccHHHHHHhcCCCHHHHHHHHHH
Q psy6552 177 LSLDHSLVLQQVASKNEAHISVSVLNNELNWSTERAQHALDF 218 (254)
Q Consensus 177 ls~D~~~il~l~~~~~~g~vt~~~l~~~l~ws~~ra~~~L~~ 218 (254)
|++.+..++.+.- ..+.|..++++.+|+|..-++..+..
T Consensus 26 L~~~~r~vl~l~~---~~g~s~~EIA~~lgiS~~tV~~~l~r 64 (113)
T 1xsv_A 26 LTNKQRNYLELFY---LEDYSLSEIADTFNVSRQAVYDNIRR 64 (113)
T ss_dssp SCHHHHHHHHHHH---TSCCCHHHHHHHTTCCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH---HcCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 6667777777765 23589999999999998766665544
No 380
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=25.72 E-value=1.2e+02 Score=22.80 Aligned_cols=47 Identities=11% Similarity=0.196 Sum_probs=37.2
Q ss_pred HHHHHHhhhhhhhcC-CceeHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHhhhhCC
Q psy6552 100 VQIVEVCLATNYKNG-GLILLDELRTRLVKSRGKSLQHQDITNEDLLAAAKKLKIFGN 156 (254)
Q Consensus 100 vqive~c~~~r~~nG-Gii~L~dl~~~~nr~Rg~~~~~~~IS~~Di~rA~~~L~~Lg~ 156 (254)
..|.+++.. ++ +-++..||+..+.+.- ..||+.=|.|.++.|...|.
T Consensus 21 ~~Il~~L~~----~~~~~~sa~ei~~~l~~~~------~~is~aTVYR~L~~L~e~Gl 68 (136)
T 1mzb_A 21 VKILQMLDS----AEQRHMSAEDVYKALMEAG------EDVGLATVYRVLTQFEAAGL 68 (136)
T ss_dssp HHHHHHHHC----C-CCSBCHHHHHHHHHHTT------CCCCHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHh----CCCCCCCHHHHHHHHHhhC------CCCCHHHHHHHHHHHHHCCc
Confidence 356666653 34 6899999999998752 46999999999999999995
No 381
>4dwd_A Mandelate racemase/muconate lactonizing enzyme, C domain protein; structural genomics, EFI, enzyme function initiative, metal protein; HET: MSE; 1.50A {Paracoccus denitrificans} PDB: 3n4e_A*
Probab=25.69 E-value=35 Score=31.09 Aligned_cols=86 Identities=10% Similarity=0.100 Sum_probs=49.2
Q ss_pred CCHHHHHHHH-HHhhhhCCCeEEEEeCCceEEEEccCCCCChhHHHHHHHhhcc-CCCcccHHHHHHhcCCCHHHHHHHH
Q psy6552 139 ITNEDLLAAA-KKLKIFGNGFSIIPIGQGQYLVQSIPGELSLDHSLVLQQVASK-NEAHISVSVLNNELNWSTERAQHAL 216 (254)
Q Consensus 139 IS~~Di~rA~-~~L~~Lg~g~~l~~~~sg~~vv~s~p~els~D~~~il~l~~~~-~~g~vt~~~l~~~l~ws~~ra~~~L 216 (254)
-+|+++.+.+ +.+... ||+.++++=|... ...+.....|-..+-.+-+.- ..--+.++ .|-+|+..-|...+
T Consensus 138 ~~~e~~~~~a~~~~~~~--G~~~~KlKvG~~~-~~~~~~~~~d~~~v~avR~a~g~~~~l~vD---aN~~~~~~~A~~~~ 211 (393)
T 4dwd_A 138 RSVDEVVREVARRVEAE--QPAAVKIRWDGDR-TRCDVDIPGDIAKARAVRELLGPDAVIGFD---ANNGYSVGGAIRVG 211 (393)
T ss_dssp SCHHHHHHHHHHHHHHH--CCSEEEEECCCCT-TCCSCCHHHHHHHHHHHHHHHCTTCCEEEE---CTTCCCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHc--CCCEEEEccCCCC-cccccCHHHHHHHHHHHHHHhCCCCeEEEE---CCCCCCHHHHHHHH
Confidence 4789998888 776554 5666666411100 001112333433332222211 01122222 36799999999999
Q ss_pred HHHHHcCcEEEeCC
Q psy6552 217 DFMVQEGYAWIDTQ 230 (254)
Q Consensus 217 ~~l~~~G~lwvD~q 230 (254)
..|.+.|+.|+.+-
T Consensus 212 ~~L~~~~i~~iEqP 225 (393)
T 4dwd_A 212 RALEDLGYSWFEEP 225 (393)
T ss_dssp HHHHHTTCSEEECC
T ss_pred HHHHhhCCCEEECC
Confidence 99999999999864
No 382
>2lfw_A PHYR sigma-like domain; signal transduction, response regulator, sigma factor mimicr sigma factor, general stress response, signaling protein; NMR {Sphingomonas SP}
Probab=25.69 E-value=80 Score=24.14 Aligned_cols=41 Identities=10% Similarity=-0.066 Sum_probs=32.3
Q ss_pred CCChhHHHHHHHhhccCCCcccHHHHHHhcCCCHHHHHHHHHHH
Q psy6552 176 ELSLDHSLVLQQVASKNEAHISVSVLNNELNWSTERAQHALDFM 219 (254)
Q Consensus 176 els~D~~~il~l~~~~~~g~vt~~~l~~~l~ws~~ra~~~L~~l 219 (254)
.|+..+-.|+.+.- ..+.|..++++.+|+|..-++..|..+
T Consensus 93 ~Lp~~~r~vl~L~~---~~g~s~~EIA~~lgis~~tV~~~l~ra 133 (157)
T 2lfw_A 93 RMTPLSRQALLLTA---MEGFSPEDAAYLIEVDTSEVETLVTEA 133 (157)
T ss_dssp TSCTTHHHHHTTTS---SSCCCHHHHHHTTTSCHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHH---HcCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 47777888877765 346899999999999998887777654
No 383
>1tiz_A Calmodulin-related protein, putative; helix-turn-helix, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} SCOP: a.39.1.5
Probab=25.57 E-value=1.2e+02 Score=18.54 Aligned_cols=33 Identities=24% Similarity=0.353 Sum_probs=18.8
Q ss_pred CCceeHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHhh
Q psy6552 114 GGLILLDELRTRLVKSRGKSLQHQDITNEDLLAAAKKLK 152 (254)
Q Consensus 114 GGii~L~dl~~~~nr~Rg~~~~~~~IS~~Di~rA~~~L~ 152 (254)
.|.|+..|+...+... | ..++++++....+.+.
T Consensus 15 ~G~i~~~el~~~l~~~-~-----~~~~~~~~~~~~~~~D 47 (67)
T 1tiz_A 15 DGKLSLDEFREVALAF-S-----PYFTQEDIVKFFEEID 47 (67)
T ss_dssp SSCEEHHHHHHHHHHT-C-----TTSCHHHHHHHHHHHC
T ss_pred CCcCcHHHHHHHHHHh-C-----CCCCHHHHHHHHHHHC
Confidence 4666777766666553 1 2456666655555544
No 384
>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A*
Probab=25.52 E-value=1.6e+02 Score=26.62 Aligned_cols=82 Identities=17% Similarity=0.165 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHcCCCcccCCCccccccccchhHHHHHHHHHHHhhhhhhh-cCCceeHHHHHHHHHHhcCCCCCCCCC
Q psy6552 61 AQFRRHFQEMCASIGVDPLASRKGFWSLLGMGDFYYELSVQIVEVCLATNYK-NGGLILLDELRTRLVKSRGKSLQHQDI 139 (254)
Q Consensus 61 p~fr~~f~~mc~~lGVdPl~s~kg~w~~lg~gdfy~eLavqive~c~~~r~~-nGGii~L~dl~~~~nr~Rg~~~~~~~I 139 (254)
.+|..-+..++..+|.+|-.... ....... +-++-.....+. +.|.|+..|....+.+.. ...
T Consensus 351 ~El~~~l~~~~~~~g~~~~~~~~------~~~~~~~----~~~~~~~~~~D~d~dG~I~~~Ef~~~~~~~~------~~~ 414 (486)
T 3mwu_A 351 DELVRGYHEFMRLKGVDSNSLIQ------NEGSTIE----DQIDSLMPLLDMDGSGSIEYSEFIASAIDRT------ILL 414 (486)
T ss_dssp HHHHHHHHHHHHHHTCCGGGHHH------HTSSCHH----HHHHHHHHHHCTTCCSSBCHHHHHHHHSCTT------TTC
T ss_pred HHHHHHHHHhhhhhcccchhccc------ccchhhH----HHHHHHHHHhcCCCCCcCcHHHHHHHHHhhh------ccc
Confidence 45555556667777776432100 0011111 222333333344 458999999987765542 356
Q ss_pred CHHHHHHHHHHhhhhCCCe
Q psy6552 140 TNEDLLAAAKKLKIFGNGF 158 (254)
Q Consensus 140 S~~Di~rA~~~L~~Lg~g~ 158 (254)
+++++.+|.+.+..=|.|+
T Consensus 415 ~~~~~~~~F~~~D~d~dG~ 433 (486)
T 3mwu_A 415 SRERMERAFKMFDKDGSGK 433 (486)
T ss_dssp CHHHHHHHHHHHCSSCSSS
T ss_pred hHHHHHHHHHHhCCCCCCc
Confidence 8899999999988777764
No 385
>1x9z_A DNA mismatch repair protein MUTL; alpha-beta fold, dimer, replication, signaling protein; HET: DNA MSE; 2.10A {Escherichia coli} SCOP: d.292.1.1
Probab=25.38 E-value=53 Score=26.62 Aligned_cols=84 Identities=14% Similarity=0.181 Sum_probs=52.8
Q ss_pred CCCHHHHHHHHHHhhhh-CCCeEEEEeCCceEEEEccCCCCCh-h-HHHHHHHhhccCCCc-ccHHHHH---------Hh
Q psy6552 138 DITNEDLLAAAKKLKIF-GNGFSIIPIGQGQYLVQSIPGELSL-D-HSLVLQQVASKNEAH-ISVSVLN---------NE 204 (254)
Q Consensus 138 ~IS~~Di~rA~~~L~~L-g~g~~l~~~~sg~~vv~s~p~els~-D-~~~il~l~~~~~~g~-vt~~~l~---------~~ 204 (254)
.+|+.|....-+..+.| ..||.+..+|.+ ..|+++|.-+.. | ...+.+++.....|. .....+. ..
T Consensus 64 ~ls~~e~~~l~~~~~~l~~~Gf~~e~~g~~-~~v~~vP~~l~~~~~~~li~~ll~~l~~~~~~~~~~~~~~~AC~~ik~g 142 (188)
T 1x9z_A 64 KVSAEEKSALEKAQSALAELGIDFQSDAQH-VTIRAVPLPLRQQNLQILIPELIGYLAKQSVFEPGNIAQWIARNLMSEH 142 (188)
T ss_dssp ECCHHHHHHHHHHHHHHHHTTCEEEECSSE-EEEEEEEGGGTTSCHHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTSCCC
T ss_pred EeCHHHHHHHHHHHHHHHhCCcEEEEcCCc-EEEEecCchhcccCHHHHHHHHHHHHHhCCcchHHHHHHHHHHhhCccC
Confidence 47899988877777777 478999999844 899999965533 2 333444443210111 1122221 12
Q ss_pred cCCCHHHHHHHHHHHHHc
Q psy6552 205 LNWSTERAQHALDFMVQE 222 (254)
Q Consensus 205 l~ws~~ra~~~L~~l~~~ 222 (254)
-.|+..-+...|++|.+.
T Consensus 143 ~~Ls~~em~~Ll~~L~~~ 160 (188)
T 1x9z_A 143 AQWSMAQAITLLADVERL 160 (188)
T ss_dssp CSCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhH
Confidence 246888999999888774
No 386
>4a35_A Mitochondrial enolase superfamily member 1; isomerase; 1.74A {Homo sapiens}
Probab=25.32 E-value=33 Score=31.93 Aligned_cols=80 Identities=13% Similarity=0.175 Sum_probs=51.6
Q ss_pred CCHHHHHHHHHHhhhhCCCeEEEEeCCceEEEEccCCCCChhHHHHHHHhhcc-CCCcccHHHHHHhcCCCHHHHHHHHH
Q psy6552 139 ITNEDLLAAAKKLKIFGNGFSIIPIGQGQYLVQSIPGELSLDHSLVLQQVASK-NEAHISVSVLNNELNWSTERAQHALD 217 (254)
Q Consensus 139 IS~~Di~rA~~~L~~Lg~g~~l~~~~sg~~vv~s~p~els~D~~~il~l~~~~-~~g~vt~~~l~~~l~ws~~ra~~~L~ 217 (254)
.+|+++.+.++.+... ||+.++++-|. ....|-..|-.+-+.- ..-.+.++ .|-+|+..-|...+.
T Consensus 200 ~~~e~~~~~a~~~~~~--Gf~~~KlKvG~--------~~~~d~~~v~avR~a~G~~~~l~vD---aN~~~~~~~A~~~~~ 266 (441)
T 4a35_A 200 YSDDTLKQLCAQALKD--GWTRFKVKVGA--------DLQDDMRRCQIIRDMIGPEKTLMMD---ANQRWDVPEAVEWMS 266 (441)
T ss_dssp CCHHHHHHHHHHHHHT--TCCEEEEECSS--------CHHHHHHHHHHHHHHHCTTSEEEEE---CTTCCCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHC--CCCEEEEcCCC--------CHHHHHHHHHHHHHHhCCCCeEEEE---CCCCCCHHHHHHHHH
Confidence 4899999988887554 67777775222 2444544443332211 01112211 367999999999999
Q ss_pred HHHHcCcEEEeCCC
Q psy6552 218 FMVQEGYAWIDTQS 231 (254)
Q Consensus 218 ~l~~~G~lwvD~q~ 231 (254)
.|+.-|+.|+.+=.
T Consensus 267 ~L~~~~~~~iEeP~ 280 (441)
T 4a35_A 267 KLAKFKPLWIEEPT 280 (441)
T ss_dssp HHGGGCCSEEECCS
T ss_pred hhcccCccEEeCCC
Confidence 99999999998643
No 387
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=25.31 E-value=1.3e+02 Score=23.21 Aligned_cols=48 Identities=19% Similarity=0.198 Sum_probs=37.9
Q ss_pred HHHHHHhhhhhhhcC-CceeHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHhhhhCCC
Q psy6552 100 VQIVEVCLATNYKNG-GLILLDELRTRLVKSRGKSLQHQDITNEDLLAAAKKLKIFGNG 157 (254)
Q Consensus 100 vqive~c~~~r~~nG-Gii~L~dl~~~~nr~Rg~~~~~~~IS~~Di~rA~~~L~~Lg~g 157 (254)
..|.+++.. ++ +-++..||+..+.+.- +.||+.=|+|+++.|...|.=
T Consensus 20 ~~Il~~L~~----~~~~h~sa~ei~~~l~~~~------~~is~aTVYR~L~~L~e~Glv 68 (150)
T 2w57_A 20 LKILEVLQQ----PECQHISAEELYKKLIDLG------EEIGLATVYRVLNQFDDAGIV 68 (150)
T ss_dssp HHHHHHHTS----GGGSSEEHHHHHHHHHHTT------CCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHh----CCCCCCCHHHHHHHHHHhC------CCCCHHHHHHHHHHHHHCCcE
Confidence 356666553 34 6899999999998752 479999999999999999953
No 388
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=25.09 E-value=82 Score=28.71 Aligned_cols=44 Identities=14% Similarity=0.112 Sum_probs=37.1
Q ss_pred HHHhhccCCCcccHHHHHHhcCCCHHHHHHHHHHHHHcCcE--EEeCC
Q psy6552 185 LQQVASKNEAHISVSVLNNELNWSTERAQHALDFMVQEGYA--WIDTQ 230 (254)
Q Consensus 185 l~l~~~~~~g~vt~~~l~~~l~ws~~ra~~~L~~l~~~G~l--wvD~q 230 (254)
..+++ ....|+.+.|+..||+|++-++..|-.|+.+|.+ -||..
T Consensus 339 ~q~~~--~Ys~I~l~~mA~~l~~s~~~~E~~L~~lI~~g~l~akID~~ 384 (429)
T 4b4t_R 339 AQLLE--SYKTLSLKSMASAFGVSVAFLDNDLGKFIPNKQLNCVIDRV 384 (429)
T ss_dssp HHHHH--TCSEEEHHHHHHHHTSCHHHHHHHHHHHHHHTSSCEEEETT
T ss_pred HHHhH--HhceeeHHHHHHHhCcCHHHHHHHHHHHHHcCCeEEEEcCC
Confidence 34455 5678999999999999999999999999999975 47755
No 389
>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*
Probab=25.04 E-value=95 Score=27.44 Aligned_cols=35 Identities=9% Similarity=0.043 Sum_probs=31.2
Q ss_pred CcccHHHHHHhcCC--CHH---HHHHHHHHHHHcCcEEEe
Q psy6552 194 AHISVSVLNNELNW--STE---RAQHALDFMVQEGYAWID 228 (254)
Q Consensus 194 g~vt~~~l~~~l~w--s~~---ra~~~L~~l~~~G~lwvD 228 (254)
|.+|+++|++.+|. ++. .....|+.|...|++-.+
T Consensus 55 ~~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~g~l~~~ 94 (364)
T 3p9c_A 55 KSLTPTEVAAKLPSAANPEAPDMVDRILRLLASYNVVTCL 94 (364)
T ss_dssp CCBCHHHHHHTTTCTTCTTHHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCCHHHHHHhcCCCCCccchhhHHHHHHHHHhCCCEEEe
Confidence 67999999999998 655 788889999999999987
No 390
>3q45_A Mandelate racemase/muconate lactonizing enzyme FA possible chloromuconate cycloisomerase...; (beta/alpha)8-barrel; 3.00A {Cytophaga hutchinsonii} PDB: 3q4d_A
Probab=24.97 E-value=21 Score=32.19 Aligned_cols=79 Identities=20% Similarity=0.292 Sum_probs=49.6
Q ss_pred CCHHHHHHHHHHhhhhCCCeEEEEeCCceEEEEccCCCCChhHHHHHHHhhcc-CCCcccHHHHHHhcCCCHHHHHHHHH
Q psy6552 139 ITNEDLLAAAKKLKIFGNGFSIIPIGQGQYLVQSIPGELSLDHSLVLQQVASK-NEAHISVSVLNNELNWSTERAQHALD 217 (254)
Q Consensus 139 IS~~Di~rA~~~L~~Lg~g~~l~~~~sg~~vv~s~p~els~D~~~il~l~~~~-~~g~vt~~~l~~~l~ws~~ra~~~L~ 217 (254)
-+|+++.+.++.+.. .||+.++++=|. ....|-..+-.+-+.- ..--+.++ .|-+|+..-|.+.+.
T Consensus 139 ~~~e~~~~~a~~~~~--~G~~~~K~KvG~--------~~~~d~~~v~avR~~~g~~~~l~vD---aN~~~~~~~A~~~~~ 205 (368)
T 3q45_A 139 DEPHKMAADAVQIKK--NGFEIIKVKVGG--------SKELDVERIRMIREAAGDSITLRID---ANQGWSVETAIETLT 205 (368)
T ss_dssp CCHHHHHHHHHHHHH--TTCSEEEEECCS--------CHHHHHHHHHHHHHHHCSSSEEEEE---CTTCBCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH--cCCCeEEEEecC--------CHHHHHHHHHHHHHHhCCCCeEEEE---CCCCCChHHHHHHHH
Confidence 479998888877643 467777775221 1233443332222211 01112222 377999999999999
Q ss_pred HHHHcCcEEEeCC
Q psy6552 218 FMVQEGYAWIDTQ 230 (254)
Q Consensus 218 ~l~~~G~lwvD~q 230 (254)
.|.+.|+.|+++-
T Consensus 206 ~l~~~~i~~iEqP 218 (368)
T 3q45_A 206 LLEPYNIQHCEEP 218 (368)
T ss_dssp HHGGGCCSCEECC
T ss_pred HHhhcCCCEEECC
Confidence 9999999999864
No 391
>3sjs_A URE3-BP sequence specific DNA binding protein; EF-hand, structural genomics, seattle S genomics center for infectious disease, ssgcid; 1.90A {Entamoeba histolytica} PDB: 3sia_A 3sib_A
Probab=24.74 E-value=1.6e+02 Score=23.70 Aligned_cols=12 Identities=8% Similarity=-0.094 Sum_probs=6.4
Q ss_pred HHHHHHHHcCCC
Q psy6552 66 HFQEMCASIGVD 77 (254)
Q Consensus 66 ~f~~mc~~lGVd 77 (254)
+|..++..+|..
T Consensus 72 El~~~l~~~g~~ 83 (220)
T 3sjs_A 72 ELMMGQFPGGIR 83 (220)
T ss_dssp HHHHCCBGGGBC
T ss_pred HHHHHHHHcCCC
Confidence 455555555544
No 392
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=24.74 E-value=1.1e+02 Score=18.03 Aligned_cols=37 Identities=3% Similarity=-0.024 Sum_probs=25.4
Q ss_pred CCChhH-HHHHHHhhccCCCcccHHHHHHhcCCCHHHHHHHH
Q psy6552 176 ELSLDH-SLVLQQVASKNEAHISVSVLNNELNWSTERAQHAL 216 (254)
Q Consensus 176 els~D~-~~il~l~~~~~~g~vt~~~l~~~l~ws~~ra~~~L 216 (254)
.++.++ ..++.+.. .| .|..+++..+|++..-....|
T Consensus 5 ~~~~~~~~~i~~l~~---~g-~s~~~ia~~lgvs~~Tv~r~l 42 (52)
T 1jko_C 5 AINKHEQEQISRLLE---KG-HPRQQLAIIFGIGVSTLYRYF 42 (52)
T ss_dssp SSCTTHHHHHHHHHH---TT-CCHHHHHHTTSCCHHHHHHHS
T ss_pred CCCHHHHHHHHHHHH---cC-CCHHHHHHHHCCCHHHHHHHH
Confidence 355444 45566655 34 899999999999987655544
No 393
>2krc_A DNA-directed RNA polymerase subunit delta; delta subunit, GRAM-positive bacteria, nucleotidyltransferase, transcription, transferase; NMR {Bacillus subtilis}
Probab=24.58 E-value=64 Score=23.97 Aligned_cols=64 Identities=13% Similarity=0.168 Sum_probs=45.2
Q ss_pred HHHHhhhhhhhcCCceeHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHh-hhhCCCeEEEEeCCceEEEEc
Q psy6552 102 IVEVCLATNYKNGGLILLDELRTRLVKSRGKSLQHQDITNEDLLAAAKKL-KIFGNGFSIIPIGQGQYLVQS 172 (254)
Q Consensus 102 ive~c~~~r~~nGGii~L~dl~~~~nr~Rg~~~~~~~IS~~Di~rA~~~L-~~Lg~g~~l~~~~sg~~vv~s 172 (254)
++|+...-..+.|.-|+..||+..+.+..| +|.+|+.+.+..| ..|...=+.+.+|.|+==+++
T Consensus 15 miDvAy~iL~~~~~~~~F~dL~~eV~~~~~-------~s~ee~~~~iaqfYTdLn~DGRFi~lGen~WgLr~ 79 (99)
T 2krc_A 15 LVEIAHELFEEHKKPVPFQELLNEIASLLG-------VKKEELGDRIAQFYTDLNIDGRFLALSDQTWGLRS 79 (99)
T ss_dssp HHHHHHHHHHHHCSCEEHHHHHHHHHHHHT-------SCGGGGTHHHHHHHHHHHTCSSCEESSSSEEECGG
T ss_pred HHHHHHHHHHHcCCcccHHHHHHHHHHHhC-------CCHHHHHHHHHHHHHHHhccCCeeECCCCceecCc
Confidence 677888888888899999999999999864 4778887777655 444444455566644433443
No 394
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=24.57 E-value=1.5e+02 Score=22.80 Aligned_cols=47 Identities=13% Similarity=0.085 Sum_probs=36.8
Q ss_pred HHHHHHhhhhhhhcCCceeHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHhhhhCCC
Q psy6552 100 VQIVEVCLATNYKNGGLILLDELRTRLVKSRGKSLQHQDITNEDLLAAAKKLKIFGNG 157 (254)
Q Consensus 100 vqive~c~~~r~~nGGii~L~dl~~~~nr~Rg~~~~~~~IS~~Di~rA~~~L~~Lg~g 157 (254)
..|.+++... + -++..|++..+.+.- +.||+.=|+|+++.|...|.=
T Consensus 22 ~~Il~~l~~~----~-h~ta~ei~~~l~~~~------~~is~~TVYR~L~~L~e~Glv 68 (145)
T 3eyy_A 22 QLVLEAVDTL----E-HATPDDILGEVRKTA------SGINISTVYRTLELLEELGLV 68 (145)
T ss_dssp HHHHHHHHHH----S-SBCHHHHHHHHHTTC------TTCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHHHHHhc----C-CCCHHHHHHHHHhhC------CCCCHhHHHHHHHHHHHCCcE
Confidence 4567776543 3 579999999987642 479999999999999999963
No 395
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=23.98 E-value=1.7e+02 Score=21.54 Aligned_cols=42 Identities=19% Similarity=0.264 Sum_probs=31.4
Q ss_pred hhHHHHHHHhhccCCC-cccHHHHHHhc-CCCHHHHHHHHHHHHH
Q psy6552 179 LDHSLVLQQVASKNEA-HISVSVLNNEL-NWSTERAQHALDFMVQ 221 (254)
Q Consensus 179 ~D~~~il~l~~~~~~g-~vt~~~l~~~l-~ws~~ra~~~L~~l~~ 221 (254)
++.-.||..|+.. +. .=|-.-|+..| +|++...++...+|+.
T Consensus 39 e~DR~IL~~cQ~~-G~s~~tFa~iA~~L~Nks~nqV~~RFq~Lm~ 82 (95)
T 1ug2_A 39 EADRVILTMCQEQ-GAQPHTFSVISQQLGNKTPVEVSHRFRELMQ 82 (95)
T ss_dssp HHHHHHHHHHHHT-TSCTTTHHHHHHHHSSCCHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHhc-CCChhHHHHHHHHHccCCHHHHHHHHHHHHH
Confidence 3566789999843 11 24666799999 5999999999988764
No 396
>4eto_A Protein S100-A4; calcium-binding protein, EF-hand, structural genomics, PSI-B protein structure initiative, NEW YORK structural genomics consortium; 1.54A {Homo sapiens} PDB: 1m31_A 2q91_A 3cga_A 3ko0_A* 3m0w_A*
Probab=23.93 E-value=1.9e+02 Score=20.20 Aligned_cols=40 Identities=13% Similarity=0.008 Sum_probs=22.5
Q ss_pred CceeHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHhhhhC
Q psy6552 115 GLILLDELRTRLVKSRGKSLQHQDITNEDLLAAAKKLKIFG 155 (254)
Q Consensus 115 Gii~L~dl~~~~nr~Rg~~~~~~~IS~~Di~rA~~~L~~Lg 155 (254)
|.|+..||...+.+.-|... ...+|++++.+-++.+..=|
T Consensus 27 G~Is~~EL~~~l~~~lg~~l-~~~~~~~ev~~~i~~~D~d~ 66 (93)
T 4eto_A 27 FKLNKSELKELLTRELPSFL-GKRTDEAAFQKLMSNLDSNR 66 (93)
T ss_dssp TSBCHHHHHHHHHHHCGGGC----CCHHHHHHHHHHHCTTS
T ss_pred CeECHHHHHHHHHHHhhhhc-cCCCCHHHHHHHHHHHCCCC
Confidence 77777777777765332100 02456777776666665433
No 397
>3pl5_A SMU_165, putative uncharacterized protein; fatty acid binding protein, lipid binding protein; HET: PLM; 2.04A {Streptococcus mutans}
Probab=23.71 E-value=3.8e+02 Score=23.61 Aligned_cols=46 Identities=7% Similarity=0.050 Sum_probs=32.7
Q ss_pred eeHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHhhhhCCCeEEEEeC
Q psy6552 117 ILLDELRTRLVKSRGKSLQHQDITNEDLLAAAKKLKIFGNGFSIIPIG 164 (254)
Q Consensus 117 i~L~dl~~~~nr~Rg~~~~~~~IS~~Di~rA~~~L~~Lg~g~~l~~~~ 164 (254)
|+..|+|..+....-... ...||.|+..+.+.+..-|..+-.+++.
T Consensus 79 i~~~efy~~m~~~~~p~T--SqPs~~~~~~~f~~l~~~g~~Ii~I~iS 124 (320)
T 3pl5_A 79 LTSRVLLEKIAAGSKPTT--SQVNVGQFESYFRQSAENGQEVLYIAFS 124 (320)
T ss_dssp CCHHHHHHHHHTTCCCEE--ECCCHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred cCHHHHHHHHhcCCCCcc--CCCCHHHHHHHHHHHHHCCCeEEEEecC
Confidence 899999999876321111 4799999999999987766544444443
No 398
>1m45_A MLC1P, myosin light chain; protein-peptide complex, myosin light chain, cell cycle protein; 1.65A {Saccharomyces cerevisiae} SCOP: a.39.1.5 PDB: 1m46_A 1n2d_A 2fcd_A 2fce_A
Probab=23.42 E-value=1.3e+02 Score=21.57 Aligned_cols=16 Identities=13% Similarity=0.212 Sum_probs=11.1
Q ss_pred CCceeHHHHHHHHHHh
Q psy6552 114 GGLILLDELRTRLVKS 129 (254)
Q Consensus 114 GGii~L~dl~~~~nr~ 129 (254)
.|.|+..|....+...
T Consensus 55 ~g~i~~~eF~~~~~~~ 70 (148)
T 1m45_A 55 ASSLTLDQITGLIEVN 70 (148)
T ss_dssp CCEEEHHHHHHHHHHT
T ss_pred CCeEcHHHHHHHHHHH
Confidence 4777777777766654
No 399
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=22.59 E-value=18 Score=34.59 Aligned_cols=90 Identities=16% Similarity=0.145 Sum_probs=15.6
Q ss_pred CCCHHHHHHHHHHhhhhCCC-eEEEEeCCc---eEEEEccC--CCCChhHHHHHHHhhccCCCcccHHHHHHhcCCCHHH
Q psy6552 138 DITNEDLLAAAKKLKIFGNG-FSIIPIGQG---QYLVQSIP--GELSLDHSLVLQQVASKNEAHISVSVLNNELNWSTER 211 (254)
Q Consensus 138 ~IS~~Di~rA~~~L~~Lg~g-~~l~~~~sg---~~vv~s~p--~els~D~~~il~l~~~~~~g~vt~~~l~~~l~ws~~r 211 (254)
.||.++|.+-++.++.-+.+ |. -.+..+ ..--.... .+.+.-...+++++- ..+..|++.|+++|.+-..|
T Consensus 404 ~v~d~ei~~v~~~~~~~~~p~~~-~~~~~~~~~~~~~~~~~~~~~~d~l~~~a~~~v~--~~~~~s~s~~qr~~~igy~r 480 (512)
T 2ius_A 404 FVRDQEVHAVVQDWKARGRPQYV-DGITSDSESEGGAGGFDGAEELDPLFDQAVQFVT--EKRKASISGVQRQFRIGYNR 480 (512)
T ss_dssp BCCHHHHHHHHHHHHTTCCCCCC-TTSCC---------------------------------------------------
T ss_pred ccChhHHHHHHHHHHhcCCCCcc-cccccccccccccccccccccccHHHHHHHHHHH--hcCCcCHHHHHHHhccChHH
Confidence 58889988888888765422 21 011000 00000000 011111223445544 35789999999999999999
Q ss_pred HHHHHHHHHHcCcEEEeCC
Q psy6552 212 AQHALDFMVQEGYAWIDTQ 230 (254)
Q Consensus 212 a~~~L~~l~~~G~lwvD~q 230 (254)
|...+++|+++|++---+.
T Consensus 481 a~~~~~~~e~~g~v~~~~~ 499 (512)
T 2ius_A 481 AARIIEQMEAQGIVSEQGH 499 (512)
T ss_dssp -------------------
T ss_pred HHHHHHHHHHCCCCCCCCC
Confidence 9999999999999865443
No 400
>3jtn_A YPBH, adapter protein MECA 2; adaptor protein, competence, sporulation, protein binding; 2.09A {Bacillus subtilis} PDB: 3jto_A
Probab=22.49 E-value=2.1e+02 Score=20.23 Aligned_cols=48 Identities=19% Similarity=0.189 Sum_probs=32.8
Q ss_pred CHHHHHHHHHHhhhh-CCCeEEEEeCCceEEEEccCCCCChhHHHHHHHhh
Q psy6552 140 TNEDLLAAAKKLKIF-GNGFSIIPIGQGQYLVQSIPGELSLDHSLVLQQVA 189 (254)
Q Consensus 140 S~~Di~rA~~~L~~L-g~g~~l~~~~sg~~vv~s~p~els~D~~~il~l~~ 189 (254)
+-+|++.+++.+... ...=.|-+++ |+.++.-...+.+.+ ..+..++.
T Consensus 9 ~~edvI~~a~~l~~~~~~~s~LYk~~-~~YYL~l~~~~~~~~-~~~~a~l~ 57 (91)
T 3jtn_A 9 SFEDIIQLSESLQRIGITGGTVYHYD-GQYFLSLEDLGSHTA-EGVVAVLA 57 (91)
T ss_dssp SHHHHHHHHHHHHHTTCCCCEEEEET-TEEEEEECCCTTCCH-HHHHHHHH
T ss_pred CHHHHHHHHHHccccCCCCceeEEEC-CEEEEEEeeCCCChH-HHHHHHHH
Confidence 568999999999766 5566777787 999987655444433 44444433
No 401
>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}
Probab=22.47 E-value=65 Score=28.66 Aligned_cols=36 Identities=11% Similarity=0.028 Sum_probs=32.6
Q ss_pred CcccHHHHHHhcCCCHHHHHHHHHHHHHcCcEEEeC
Q psy6552 194 AHISVSVLNNELNWSTERAQHALDFMVQEGYAWIDT 229 (254)
Q Consensus 194 g~vt~~~l~~~l~ws~~ra~~~L~~l~~~G~lwvD~ 229 (254)
+..|+.+|+..+|.+...++..|+.|...|++.+++
T Consensus 54 ~~~t~~eLa~~~g~~~~~v~~~L~~l~~~gll~~~~ 89 (373)
T 2qm3_A 54 ASDDIWRIVDLSEEPLPLVVAILESLNELGYVTFED 89 (373)
T ss_dssp HCSCHHHHHHHHTSCHHHHHHHHHHHHHTTSEECSS
T ss_pred CCCCHHHHHHHhCCChHHHHHHHHHHhhCCcEEECC
Confidence 358999999999999999999999999999998753
No 402
>3nso_A Protein S100-A3; EF-hand, Ca2+, Zn2+ binding, metal binding protein; 1.45A {Homo sapiens} SCOP: a.39.1.2 PDB: 3nsi_A 1kso_A 3nsk_A 3nsl_A
Probab=22.44 E-value=2.2e+02 Score=20.44 Aligned_cols=44 Identities=16% Similarity=0.080 Sum_probs=31.8
Q ss_pred hcC--CceeHHHHHHHHHHhcCC-CCCCCCCCHHHHHHHHHHhhhhCCC
Q psy6552 112 KNG--GLILLDELRTRLVKSRGK-SLQHQDITNEDLLAAAKKLKIFGNG 157 (254)
Q Consensus 112 ~nG--Gii~L~dl~~~~nr~Rg~-~~~~~~IS~~Di~rA~~~L~~Lg~g 157 (254)
++| |.|+..||...+.+.-|. .. ..+|+++|.+-++.+..=|.|
T Consensus 22 ~dg~~G~Is~~EL~~~l~~~l~~~lg--~~~~~~ev~~~i~~~D~dgDG 68 (101)
T 3nso_A 22 RCGDKYKLCQAELKELLQKELATWTP--TEFRECDYNKFMSVLDTNKDC 68 (101)
T ss_dssp TSSCTTEECHHHHHHHHHHHTTTCCC--CTTCHHHHHHHHHHHHHCCCS
T ss_pred cCCCCCEECHHHHHHHHHHHhhhhcC--CCCCHHHHHHHHHHhCCCCCC
Confidence 554 899999999998874331 11 467899988888888765544
No 403
>2l0k_A Stage III sporulation protein D; SPOIIID, solution structure, DNA binding, bacillus subti transcription factor, transcription; NMR {Bacillus subtilis}
Probab=22.28 E-value=68 Score=23.35 Aligned_cols=35 Identities=14% Similarity=0.136 Sum_probs=27.8
Q ss_pred HHHHHHHhhccCCCcccHHHHHHhcCCCHHHHHHHHHH
Q psy6552 181 HSLVLQQVASKNEAHISVSVLNNELNWSTERAQHALDF 218 (254)
Q Consensus 181 ~~~il~l~~~~~~g~vt~~~l~~~l~ws~~ra~~~L~~ 218 (254)
+..|+++.... + +|..+|++.+|.|..-....|..
T Consensus 9 ~~~I~~~l~~~--~-~ti~dlA~~~gVS~~TVsR~L~~ 43 (93)
T 2l0k_A 9 TIKIGKYIVET--K-KTVRVIAKEFGVSKSTVHKDLTE 43 (93)
T ss_dssp HHHHHHHHHHH--C-CCHHHHHHHHTSCHHHHHHHHTT
T ss_pred HHHHHHHHHHc--C-CCHHHHHHHHCCCHHHHHHHHcC
Confidence 56778887743 4 99999999999999888877753
No 404
>1yg2_A Gene activator APHA; virulence factor, winged helix, transcripti factor, transcription; 2.20A {Vibrio cholerae} SCOP: a.4.5.61
Probab=22.05 E-value=1.7e+02 Score=23.10 Aligned_cols=45 Identities=13% Similarity=0.154 Sum_probs=35.9
Q ss_pred HHHHHhhccCCCcccHHHHHHhc--------CCCHHHHHHHHHHHHHcCcEEEeCC
Q psy6552 183 LVLQQVASKNEAHISVSVLNNEL--------NWSTERAQHALDFMVQEGYAWIDTQ 230 (254)
Q Consensus 183 ~il~l~~~~~~g~vt~~~l~~~l--------~ws~~ra~~~L~~l~~~G~lwvD~q 230 (254)
.||.+.. .|-.+..+|++.+ +.+..-.-..|..|+++|++-....
T Consensus 6 ~iL~lL~---~~~~~gyel~~~l~~~~~~~~~~s~~~ly~~L~~Le~~GlI~~~~~ 58 (179)
T 1yg2_A 6 VILTVLS---TRDATGYDITKEFSASIGYFWKASHQQVYRELNKMGEQGLVTCVLE 58 (179)
T ss_dssp HHHHHHH---HCCBCHHHHHHHHTTGGGGTCCCCHHHHHHHHHHHHHTTSEEECCC
T ss_pred HHHHHHh---cCCCCHHHHHHHHHHHhCCccCCCcCcHHHHHHHHHHCCCeEEEee
Confidence 4555555 2568899999888 6889999999999999999987654
No 405
>3ugv_A Enolase; enzyme function initiative, EFI, lyase; 2.30A {Alpha proteobacterium BAL199}
Probab=21.88 E-value=31 Score=31.43 Aligned_cols=82 Identities=16% Similarity=0.176 Sum_probs=49.9
Q ss_pred CCHHHHHHHHHHhhhh-CCCeEEEEeCCceEEEEccCCCCChhHHHHHHHhhcc-CCCcccHHHHHHhcCCCHHHHHHHH
Q psy6552 139 ITNEDLLAAAKKLKIF-GNGFSIIPIGQGQYLVQSIPGELSLDHSLVLQQVASK-NEAHISVSVLNNELNWSTERAQHAL 216 (254)
Q Consensus 139 IS~~Di~rA~~~L~~L-g~g~~l~~~~sg~~vv~s~p~els~D~~~il~l~~~~-~~g~vt~~~l~~~l~ws~~ra~~~L 216 (254)
-+|+++.+.++.+... +.||+.++++=|. + .+..|-..+-.+-+.- ..-.+.++ .|-+|+..-|.+.+
T Consensus 170 ~~~e~~~~~a~~~~~~~~~G~~~iKlKvG~------~-~~~~d~~~v~avR~a~G~~~~l~vD---aN~~~~~~~A~~~~ 239 (390)
T 3ugv_A 170 SPAEVAAEAVELKAEGQGTGFKGLKLRMGR------D-DPAVDIETAEAVWDAVGRDTALMVD---FNQGLDMAEAMHRT 239 (390)
T ss_dssp CHHHHHHHHHHHHHTTCTTCCSEEEEECCC------S-SHHHHHHHHHHHHHHHCTTSEEEEE---CTTCCCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhhhCCCcEEEEecCC------C-CHHHHHHHHHHHHHHhCCCCEEEEE---CCCCCCHHHHHHHH
Confidence 4788888777766443 2368777775111 1 1344444443322211 01122221 36799999999999
Q ss_pred HHHHHcCcEEEeCC
Q psy6552 217 DFMVQEGYAWIDTQ 230 (254)
Q Consensus 217 ~~l~~~G~lwvD~q 230 (254)
..|.+-|+.|+.+-
T Consensus 240 ~~l~~~~i~~iEqP 253 (390)
T 3ugv_A 240 RQIDDLGLEWIEEP 253 (390)
T ss_dssp HHHTTSCCSEEECC
T ss_pred HHHHhhCCCEEECC
Confidence 99999999999864
No 406
>2nr3_A Hypothetical protein; APC84902, conserved domain, pseudomonas syringae PV. tomato STR. DC3000, structural genomics, PSI-2; 2.21A {Pseudomonas syringae PV} PDB: 3bz6_A
Probab=21.84 E-value=3.4e+02 Score=22.35 Aligned_cols=123 Identities=15% Similarity=0.169 Sum_probs=76.2
Q ss_pred ceeHHHHHHHHHHhcCC-CCCCCCCCHHHHHHHHHHhhhhCCCeEEEEeCCc-eEEEEccC--CCCChhHHHHHHHhhcc
Q psy6552 116 LILLDELRTRLVKSRGK-SLQHQDITNEDLLAAAKKLKIFGNGFSIIPIGQG-QYLVQSIP--GELSLDHSLVLQQVASK 191 (254)
Q Consensus 116 ii~L~dl~~~~nr~Rg~-~~~~~~IS~~Di~rA~~~L~~Lg~g~~l~~~~sg-~~vv~s~p--~els~D~~~il~l~~~~ 191 (254)
=++|.-|...-|.+-.. .. -.+|+.||..|+..|+..+.=. ...+|. .+|=+-.. ..++..+..++-+.-
T Consensus 45 PLsLNaL~~aCNQKsnRePV--m~l~e~eV~~aLd~L~~~~Lv~--~~~gsRv~Ky~Hr~~~~l~l~~~e~All~~Ll-- 118 (183)
T 2nr3_A 45 PLTLNALVIACNQKTSRDPV--MNLTQGQVGQSLRALEGRGLTR--LVMGSRADRWEHKVDKGLELVPAQVILTGLLL-- 118 (183)
T ss_dssp SEEHHHHHHHHTCSSSCSSC--CCCCHHHHHHHHHHHHHTTSEE--EECCSSCCEEEECHHHHHTCCHHHHHHHHHHH--
T ss_pred cchHHHHHHHhccccccCcc--ccCCHHHHHHHHHHHHHCCCee--eccCCchHHHHhhhhhhcCCCHHHHHHHHHHH--
Confidence 35677777777775333 11 3689999999999999988522 122321 22222221 246655655544433
Q ss_pred CCCcccHHHHHHhcCC-----CHHHHHHHHHHHHHcCcEEEeCCCCCcc-cceecccccC
Q psy6552 192 NEAHISVSVLNNELNW-----STERAQHALDFMVQEGYAWIDTQSPQEH-LYWFPSLFTE 245 (254)
Q Consensus 192 ~~g~vt~~~l~~~l~w-----s~~ra~~~L~~l~~~G~lwvD~q~~~e~-~yw~p~lf~~ 245 (254)
-.|-=|+.+|..+.+= +..-.+..|+.|.+.+++..=-..|+.. .+|. -+|..
T Consensus 119 LRGpQT~gELRtRs~Rl~~F~d~~~Ve~~L~~L~~r~lV~~LpR~pG~RE~Ry~-HLl~g 177 (183)
T 2nr3_A 119 LRGPQTVSELLTRSNRMHDFEDSEQVVHQLERLIARGLATLVPRQSGQREDRYM-HLIGD 177 (183)
T ss_dssp HHCSEEHHHHHHHTTTTSCCSSHHHHHHHHHHHHHTTSEEEECCCSSCSSCEEE-ESSBC
T ss_pred hcCCCChHHHHHhhhcCCcCCCHHHHHHHHHHHhhCcHHHhcCCCCCchHHHHH-HHhcC
Confidence 2478899999865432 7888899999999999887665444433 4554 34443
No 407
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=21.79 E-value=1.5e+02 Score=18.39 Aligned_cols=36 Identities=14% Similarity=0.118 Sum_probs=27.0
Q ss_pred HHHHHHHhhccCCCcccHHHHHHhcCCCHHHHHHHHHHHH
Q psy6552 181 HSLVLQQVASKNEAHISVSVLNNELNWSTERAQHALDFMV 220 (254)
Q Consensus 181 ~~~il~l~~~~~~g~vt~~~l~~~l~ws~~ra~~~L~~l~ 220 (254)
+..|+.+.. .+.|..++++.+|+|+.-++..+..+.
T Consensus 3 e~~vl~l~~----~g~s~~eIA~~l~is~~tV~~~~~~~~ 38 (61)
T 2jpc_A 3 ERQVLKLID----EGYTNHGISEKLHISIKTVETHRMNMM 38 (61)
T ss_dssp HHHHHHHHH----TSCCSHHHHHHTCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHH----cCCCHHHHHHHhCCCHHHHHHHHHHHH
Confidence 445666543 247899999999999999888887653
No 408
>1s6j_A CDPK, calcium-dependent protein kinase SK5; EF-hand, helix-loop-helix, calcium-binding, calmodulin superfamily, transferase, plant protein; NMR {Glycine max} SCOP: a.39.1.5
Probab=21.54 E-value=1.8e+02 Score=19.01 Aligned_cols=39 Identities=26% Similarity=0.441 Sum_probs=26.2
Q ss_pred cCCceeHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHhhhhCCC
Q psy6552 113 NGGLILLDELRTRLVKSRGKSLQHQDITNEDLLAAAKKLKIFGNG 157 (254)
Q Consensus 113 nGGii~L~dl~~~~nr~Rg~~~~~~~IS~~Di~rA~~~L~~Lg~g 157 (254)
+.|.|+..|+...+... | ..+|++++...++.+..=+.|
T Consensus 36 ~~G~i~~~el~~~l~~~-~-----~~~~~~~~~~l~~~~d~~~~g 74 (87)
T 1s6j_A 36 NSGTITFDELKDGLKRV-G-----SELMESEIKDLMDAADIDKSG 74 (87)
T ss_dssp CSSCEEHHHHHHHHHTT-T-----SSCCHHHHHHHHHHHCTTCSS
T ss_pred CCCcCcHHHHHHHHHHh-C-----CCCCHHHHHHHHHHhCCCCCC
Confidence 45788888888777653 1 357888887777776544433
No 409
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=21.28 E-value=2.8e+02 Score=21.22 Aligned_cols=57 Identities=9% Similarity=0.070 Sum_probs=41.4
Q ss_pred HHHHHHhhhhhhhcCCceeHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHhhhhCCCeEEEEeCCce
Q psy6552 100 VQIVEVCLATNYKNGGLILLDELRTRLVKSRGKSLQHQDITNEDLLAAAKKLKIFGNGFSIIPIGQGQ 167 (254)
Q Consensus 100 vqive~c~~~r~~nGGii~L~dl~~~~nr~Rg~~~~~~~IS~~Di~rA~~~L~~Lg~g~~l~~~~sg~ 167 (254)
..|.++... +++-++..||+..+.+.- +.||+.=|+|+++.|...|.=-++ .+++|.
T Consensus 30 ~~IL~~l~~----~~~~~sa~ei~~~l~~~~------~~is~aTVYR~L~~L~e~Glv~~~-~~~~~~ 86 (150)
T 2xig_A 30 EEVVSVLYR----SGTHLSPEEITHSIRQKD------KNTSISSVYRILNFLEKENFISVL-ETSKSG 86 (150)
T ss_dssp HHHHHHHHH----CSSCBCHHHHHHHHHHHS------TTCCHHHHHHHHHHHHHTTSEEEE-EETTTE
T ss_pred HHHHHHHHh----CCCCCCHHHHHHHHHHhC------CCCCHhhHHHHHHHHHHCCcEEEE-EeCCCc
Confidence 356666543 356789999999997752 469999999999999999963333 444343
No 410
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=21.18 E-value=1.8e+02 Score=21.40 Aligned_cols=39 Identities=13% Similarity=0.013 Sum_probs=27.4
Q ss_pred CChhHHHHHHHhhccCCCcccHHHHHHhcCCCHHHHHHHHHHH
Q psy6552 177 LSLDHSLVLQQVASKNEAHISVSVLNNELNWSTERAQHALDFM 219 (254)
Q Consensus 177 ls~D~~~il~l~~~~~~g~vt~~~l~~~l~ws~~ra~~~L~~l 219 (254)
|+..+..|+. .- ..+.|..++++.+|+|...++..+..+
T Consensus 110 L~~~~r~v~~-~~---~~g~s~~EIA~~lgis~~tV~~~~~ra 148 (164)
T 3mzy_A 110 FSKFEKEVLT-YL---IRGYSYREIATILSKNLKSIDNTIQRI 148 (164)
T ss_dssp SCHHHHHHHH-HH---TTTCCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCHHHHHHHH-HH---HcCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 5555666655 33 346799999999999997766665443
No 411
>2qac_A Myosin A tail domain interacting protein MTIP; malaria invasion, structural genomics, PSI, protein structur initiative, structural genomics of pathogenic protozoa CONS SGPP; 1.70A {Plasmodium falciparum} PDB: 2auc_A
Probab=21.15 E-value=2.3e+02 Score=20.23 Aligned_cols=32 Identities=16% Similarity=0.158 Sum_probs=17.8
Q ss_pred HHHHHHHHHHh-hhhhhcCHHHHHHHHHHHHHcCCCcc
Q psy6552 43 RDKLESFASEY-KNEIKKDAQFRRHFQEMCASIGVDPL 79 (254)
Q Consensus 43 k~~L~~FA~kh-~~~I~~dp~fr~~f~~mc~~lGVdPl 79 (254)
+.....|-... .+.|.. .+|..++.++|.+|-
T Consensus 17 ~~~F~~~D~d~~~G~i~~-----~el~~~l~~~g~~~~ 49 (146)
T 2qac_A 17 SDVRIYFNEKSSGGKISI-----DNASYNARKLGLAPS 49 (146)
T ss_dssp HHHHHHHHHHCBTTBEEH-----HHHHHHHHHTTCCCC
T ss_pred HHHHHHhCccCCCCcccH-----HHHHHHHHHhCCCCC
Confidence 33333454444 444422 367777888887653
No 412
>3euh_C MUKE, chromosome partition protein MUKF; chromosome condensation, condensin, non-SMC subunit, kleisin, calcium, cell cycle, cell division; 2.90A {Escherichia coli} PDB: 3rpu_G
Probab=21.01 E-value=1.3e+02 Score=25.68 Aligned_cols=109 Identities=23% Similarity=0.417 Sum_probs=56.9
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCHHHHHHHHHHHHHcCCCcccCCCcccc-----ccccc-hhHH
Q psy6552 23 KGTSIQENQLEQLSQHLNTFRDKLESFASEYKNEIKKDAQFRRHFQEMCASIGVDPLASRKGFWS-----LLGMG-DFYY 96 (254)
Q Consensus 23 ~g~~l~~~~~~~L~~ql~~fk~~L~~FA~kh~~~I~~dp~fr~~f~~mc~~lGVdPl~s~kg~w~-----~lg~g-dfy~ 96 (254)
.|..|..... +..+-+..|++-|+.|=.+|.-+...-|+ ||+= ...++ .+..
T Consensus 32 ~GrhI~~ddl-~~haFL~d~~~~L~~fY~ry~~eLirapE---------------------gffYLrPr~ttlIprs~LS 89 (234)
T 3euh_C 32 SGRHIGLDEL-DNHAFLMDFQEYLEEFYARYNVELIRAPE---------------------GFFYLRPRSTTLIPRSVLS 89 (234)
T ss_dssp TTCCBCTTSH-HHHHHHHHHHHHHHHHHHTTTEEEEECTT---------------------SCEEEEECTTCSSCEEECC
T ss_pred cCCCcCcccc-hhhHHHHHHHHHHHHHHHhcCeeeEEcCC---------------------CceEecccccCcccHHHhh
Confidence 3444554444 45555666777777776666555544443 2210 00111 2333
Q ss_pred HHHHHHHHH-hhh----hhhhcCCceeHHHHHHHH-------------H-HhcCCCCCCC-CCCHHHHHHHHHHhhhhC
Q psy6552 97 ELSVQIVEV-CLA----TNYKNGGLILLDELRTRL-------------V-KSRGKSLQHQ-DITNEDLLAAAKKLKIFG 155 (254)
Q Consensus 97 eLavqive~-c~~----~r~~nGGii~L~dl~~~~-------------n-r~Rg~~~~~~-~IS~~Di~rA~~~L~~Lg 155 (254)
||-.=|--+ |.- .|-.|+|+++..+|+..+ | |+.|+.- + .==.+++.+|++.|..||
T Consensus 90 EleMlvGkvLc~lYLsperLa~~gift~qeL~eeL~sl~dE~kLlkl~~~R~~GSDl--D~~kl~ekv~~sLrrL~Rlg 166 (234)
T 3euh_C 90 ELDMMVGKILCYLYLSPERLANEGIFTQQELYDELLTLADEAKLLKLVNNRSTGSDV--DRQKLQEKVRSSLNRLRRLG 166 (234)
T ss_dssp HHHHHHHHHHHHHHHCGGGGGGTTEEEHHHHHHHHHHHSCHHHHHHHHSSSCSSCHH--HHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHcCHHHHhcCCcccHHHHHHHHHHhhCHHHHHHHHhccCCCchh--hHHHHHHHHHHHHHHHHhcC
Confidence 333322222 222 345689999999998766 3 3323200 0 011457788888888887
No 413
>2r2i_A Guanylyl cyclase-activating protein 1; EF hand, GCAP, guanylate cyclase activating protein, GCAP1, GCAP-1, calcium, lipoprotein, myristate; HET: MYR; 2.00A {Gallus gallus}
Probab=20.96 E-value=2.4e+02 Score=21.58 Aligned_cols=27 Identities=7% Similarity=0.259 Sum_probs=17.4
Q ss_pred HHHHHhhccCCCcccHHHHHHhcCCCH
Q psy6552 183 LVLQQVASKNEAHISVSVLNNELNWST 209 (254)
Q Consensus 183 ~il~l~~~~~~g~vt~~~l~~~l~ws~ 209 (254)
.+...+-....|.||..++...+.-.+
T Consensus 135 ~~f~~~D~d~dG~I~~~Ef~~~~~~~~ 161 (198)
T 2r2i_A 135 MVFDKIDINGDGELSLEEFMEGVQKDE 161 (198)
T ss_dssp HHHHHHCTTCSSEECHHHHHHHHTTCH
T ss_pred HHHHHhCCCCCCcCcHHHHHHHHHcCH
Confidence 334444322478999999988776443
No 414
>1gjy_A Sorcin, CP-22, V19; calcium binding, calcium-binding, phosphorylation; 2.2A {Chinese hamster} SCOP: a.39.1.8
Probab=20.96 E-value=2.6e+02 Score=20.68 Aligned_cols=13 Identities=15% Similarity=0.289 Sum_probs=9.4
Q ss_pred HHHHHHHHHcCCC
Q psy6552 65 RHFQEMCASIGVD 77 (254)
Q Consensus 65 ~~f~~mc~~lGVd 77 (254)
.+|..++..+|++
T Consensus 21 ~el~~~l~~lg~~ 33 (167)
T 1gjy_A 21 DELQRCLTQSGIA 33 (167)
T ss_dssp HHHHHHHHHHTCS
T ss_pred HHHHHHHHhhccc
Confidence 4677777788875
No 415
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=20.86 E-value=1.6e+02 Score=21.79 Aligned_cols=40 Identities=10% Similarity=0.087 Sum_probs=29.5
Q ss_pred CChhHHHHHHHhhccCCCcccHHHHHHhcCCCHHHHHHHHHHH
Q psy6552 177 LSLDHSLVLQQVASKNEAHISVSVLNNELNWSTERAQHALDFM 219 (254)
Q Consensus 177 ls~D~~~il~l~~~~~~g~vt~~~l~~~l~ws~~ra~~~L~~l 219 (254)
+++.+..++.+.-. .+.|..++++.+|+|+.-++..+..+
T Consensus 23 L~~~~r~vl~l~y~---~g~s~~EIA~~lgiS~~tV~~~l~ra 62 (113)
T 1s7o_A 23 LTDKQMNYIELYYA---DDYSLAEIADEFGVSRQAVYDNIKRT 62 (113)
T ss_dssp SCHHHHHHHHHHHH---TCCCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH---cCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 66677777777642 25899999999999987766665543
No 416
>3i4k_A Muconate lactonizing enzyme; structural genomics, NYSGXRC, target 9450D, isomerase, PSI-2, protein structure initiative; 2.20A {Corynebacterium glutamicum}
Probab=20.75 E-value=80 Score=28.42 Aligned_cols=78 Identities=14% Similarity=0.178 Sum_probs=46.7
Q ss_pred CHHHHHHHHHHhhhhCCCeEEEEeCCceEEEEccCCCCChhHHHHHHHhhccCCC---cccHHHHHHhcCCCHHHHHHHH
Q psy6552 140 TNEDLLAAAKKLKIFGNGFSIIPIGQGQYLVQSIPGELSLDHSLVLQQVASKNEA---HISVSVLNNELNWSTERAQHAL 216 (254)
Q Consensus 140 S~~Di~rA~~~L~~Lg~g~~l~~~~sg~~vv~s~p~els~D~~~il~l~~~~~~g---~vt~~~l~~~l~ws~~ra~~~L 216 (254)
+|+++.+.++..-.- .||+.++++=|. . ....|-..+ +.+.+. -| -+.++ -|-+|+..-|.+.+
T Consensus 148 ~~~~~~~~a~~~~~~-~G~~~~K~Kvg~-----~--~~~~d~~~v-~avR~a-~g~~~~l~vD---an~~~~~~~A~~~~ 214 (383)
T 3i4k_A 148 PLDVAVAEIEERIEE-FGNRSFKLKMGA-----G--DPAEDTRRV-AELARE-VGDRVSLRID---INARWDRRTALHYL 214 (383)
T ss_dssp CHHHHHHHHHHHHHH-HCCSEEEEECCS-----S--CHHHHHHHH-HHHHHT-TTTTSEEEEE---CTTCSCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHh-cCCcEEEEeeCC-----C--CHHHHHHHH-HHHHHH-cCCCCEEEEE---CCCCCCHHHHHHHH
Confidence 678777666654332 146666654111 0 133344333 333321 22 12222 37899999999999
Q ss_pred HHHHHcCcEEEeCC
Q psy6552 217 DFMVQEGYAWIDTQ 230 (254)
Q Consensus 217 ~~l~~~G~lwvD~q 230 (254)
..|.+.|+.|+++-
T Consensus 215 ~~l~~~~i~~iEqP 228 (383)
T 3i4k_A 215 PILAEAGVELFEQP 228 (383)
T ss_dssp HHHHHTTCCEEESC
T ss_pred HHHHhcCCCEEECC
Confidence 99999999999864
No 417
>3toy_A Mandelate racemase/muconate lactonizing enzyme FA protein; enolase, magnesium binding site, lyase; HET: P4C; 1.80A {Bradyrhizobium SP} PDB: 3tte_A*
Probab=20.55 E-value=47 Score=30.06 Aligned_cols=81 Identities=15% Similarity=0.224 Sum_probs=49.7
Q ss_pred CCHHHHHHHHHHhhhhCCCeEEEEeCCceEEEEccCCCCChhHHHHHHHhhcc-CCCcccHHHHHHhcCCCHHHHHHHHH
Q psy6552 139 ITNEDLLAAAKKLKIFGNGFSIIPIGQGQYLVQSIPGELSLDHSLVLQQVASK-NEAHISVSVLNNELNWSTERAQHALD 217 (254)
Q Consensus 139 IS~~Di~rA~~~L~~Lg~g~~l~~~~sg~~vv~s~p~els~D~~~il~l~~~~-~~g~vt~~~l~~~l~ws~~ra~~~L~ 217 (254)
-+|+++.+.++.+... .||+.++++=|. .....|-..+-.+-+.- ..--+.++ .|-+|+..-|.+.+.
T Consensus 166 ~~~e~~~~~a~~~~~~-~G~~~~KlKvG~-------~~~~~d~~~v~avR~a~G~~~~l~vD---aN~~~~~~~A~~~~~ 234 (383)
T 3toy_A 166 LDARDDERTLRTACDE-HGFRAIKSKGGH-------GDLATDEAMIKGLRALLGPDIALMLD---FNQSLDPAEATRRIA 234 (383)
T ss_dssp CCHHHHHHHHHHHHHT-SCCCEEEEECCS-------SCHHHHHHHHHHHHHHHCTTSEEEEE---CTTCSCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHc-cCCcEEEEecCC-------CCHHHHHHHHHHHHHHhCCCCeEEEe---CCCCCCHHHHHHHHH
Confidence 4899988888776544 157777765111 11344444443332211 01112221 367999999999999
Q ss_pred HHHHcCcEEEeCC
Q psy6552 218 FMVQEGYAWIDTQ 230 (254)
Q Consensus 218 ~l~~~G~lwvD~q 230 (254)
.|.+.|+.|+.+-
T Consensus 235 ~l~~~~i~~iEeP 247 (383)
T 3toy_A 235 RLADYDLTWIEEP 247 (383)
T ss_dssp HHGGGCCSEEECC
T ss_pred HHHhhCCCEEECC
Confidence 9999999999864
No 418
>2qgq_A Protein TM_1862; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: CXS; 2.00A {Thermotoga maritima MSB8}
Probab=20.53 E-value=1.8e+02 Score=24.90 Aligned_cols=47 Identities=17% Similarity=0.156 Sum_probs=32.7
Q ss_pred CCHHHHHHHHHHhhhhCCCeEEEEeCCceEEEEccCCCCChhHHHHHHHhhc
Q psy6552 139 ITNEDLLAAAKKLKIFGNGFSIIPIGQGQYLVQSIPGELSLDHSLVLQQVAS 190 (254)
Q Consensus 139 IS~~Di~rA~~~L~~Lg~g~~l~~~~sg~~vv~s~p~els~D~~~il~l~~~ 190 (254)
.|.++++++++.++....++.+ +..+|--.|.|-.+|....++++..
T Consensus 136 ~t~e~~~~~i~~l~~~~~gi~i-----~~~~IvG~PgEt~ed~~~t~~~l~~ 182 (304)
T 2qgq_A 136 KSSEELKKMLSSIRERFPDAVL-----RTSIIVGFPGETEEDFEELKQFVEE 182 (304)
T ss_dssp SCHHHHHHHHHHHHHHCTTCEE-----EEEEEECCTTCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhCCCCEE-----EEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 4789999999999886556654 2335666787666666666776653
No 419
>1y14_A B32, RPB4, DNA-directed RNA polymerase II 32 kDa polypeptide; transferase; 2.30A {Saccharomyces cerevisiae} SCOP: a.60.8.2
Probab=20.33 E-value=2.7e+02 Score=23.05 Aligned_cols=63 Identities=21% Similarity=0.288 Sum_probs=44.1
Q ss_pred cCHHHHHHHHHHHHHcCCCcccCCCccccccccchhHHHHHHHHHHHhhhhhhhcCCceeHHHHHHHHHHhcCCCCCCCC
Q psy6552 59 KDAQFRRHFQEMCASIGVDPLASRKGFWSLLGMGDFYYELSVQIVEVCLATNYKNGGLILLDELRTRLVKSRGKSLQHQD 138 (254)
Q Consensus 59 ~dp~fr~~f~~mc~~lGVdPl~s~kg~w~~lg~gdfy~eLavqive~c~~~r~~nGGii~L~dl~~~~nr~Rg~~~~~~~ 138 (254)
++|+--.+|.+.+...|+.|. -+.+|+.+|-.+ ..|+..++..-+ ..
T Consensus 121 kn~Esa~elre~L~~~kL~ef------------------E~aqLaNL~PeT---------adEaraLIpSle------~r 167 (187)
T 1y14_A 121 RDQETVGAVIQLLKSTGLHPF------------------EVAQLGSLACDT---------ADEAKTLIPSLN------NK 167 (187)
T ss_dssp CSHHHHHHHHHHHHTTTCCHH------------------HHHHHHHSCCSS---------HHHHHHHSGGGT------TT
T ss_pred CCHHHHHHHHHHHHhcCCCHH------------------HHHHcCcCCCCC---------HHHHHHHHHhhc------cC
Confidence 567655667766665554443 367899988774 667777877764 35
Q ss_pred CCHHHHHHHHHHhhhh
Q psy6552 139 ITNEDLLAAAKKLKIF 154 (254)
Q Consensus 139 IS~~Di~rA~~~L~~L 154 (254)
+|++++..-++.+..+
T Consensus 168 lsdEeLeeILd~L~k~ 183 (187)
T 1y14_A 168 ISDDELERILKELSNL 183 (187)
T ss_dssp SCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh
Confidence 7899888888877664
No 420
>3u0k_A Rcamp; fluorescent protein, calcium binding, EF-hand, genetically E calcium indicator; HET: NFA CRK; 2.10A {Entacmaea quadricolor}
Probab=20.28 E-value=5.2e+02 Score=24.08 Aligned_cols=18 Identities=17% Similarity=0.488 Sum_probs=10.2
Q ss_pred cchHHHHHHHHHHHHHHH
Q psy6552 25 TSIQENQLEQLSQHLNTF 42 (254)
Q Consensus 25 ~~l~~~~~~~L~~ql~~f 42 (254)
+++++++.++|+.....|
T Consensus 294 E~Lt~EEI~ELREaF~~f 311 (440)
T 3u0k_A 294 DQLTEEQIAEFKEAFSLF 311 (440)
T ss_dssp BCCCHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHH
Confidence 346666666666655444
No 421
>4etr_A Putative uncharacterized protein; DUF2383, domain of unknown function, cytoplasmic, unknown FU; 2.25A {Pseudomonas aeruginosa}
Probab=20.24 E-value=2.8e+02 Score=21.35 Aligned_cols=41 Identities=22% Similarity=0.380 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCHHHHHHHHHHH
Q psy6552 29 ENQLEQLSQHLNTFRDKLESFASEYKNEIKKDAQFRRHFQEMC 71 (254)
Q Consensus 29 ~~~~~~L~~ql~~fk~~L~~FA~kh~~~I~~dp~fr~~f~~mc 71 (254)
+.-.+.|+.++..-.+...-|-. ...+ -+||.++..|+.++
T Consensus 10 ~~~i~~Ln~Li~~~~D~~~gY~~-aae~-~~d~~lk~~f~~~a 50 (153)
T 4etr_A 10 DDTLDVLNDLLQTSKDGEAGFHA-CAED-LRDPQLKAAMLEQS 50 (153)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-HHHT-CCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHH-HHHH-CCCHHHHHHHHHHH
Confidence 34566788888887777775433 2222 26777766665554
No 422
>2xub_A DNA-directed RNA polymerase III subunit RPC3; transcription, winged helix; 2.80A {Homo sapiens} PDB: 2xv4_S
Probab=20.23 E-value=98 Score=29.35 Aligned_cols=48 Identities=13% Similarity=0.160 Sum_probs=39.6
Q ss_pred CCcccHHHHHHhcCCCHHHHHHHHHHHHHcCcEEEeCCCCCcccceecc
Q psy6552 193 EAHISVSVLNNELNWSTERAQHALDFMVQEGYAWIDTQSPQEHLYWFPS 241 (254)
Q Consensus 193 ~g~vt~~~l~~~l~ws~~ra~~~L~~l~~~G~lwvD~q~~~e~~yw~p~ 241 (254)
.|..|..+|....+.++...+..|--|++.|++...... ....||..+
T Consensus 31 ~G~ltL~~I~~~t~L~~~~Vk~~L~vLIQh~lV~~~~~~-~~~~~Y~~~ 78 (534)
T 2xub_A 31 TGSQPLRVIAHDTGTSLDQVKKALCVLVQHNLVSYQVHK-RGVVEYEAQ 78 (534)
T ss_dssp HCSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEET-TTEEEEEEC
T ss_pred cCCcCHHHHHHHhCCCHHHHHHHHHHHHhcCCeeEEeCC-CCcEEEEEC
Confidence 589999999999999999999999999999999875432 234666555
No 423
>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A*
Probab=20.22 E-value=71 Score=25.54 Aligned_cols=30 Identities=13% Similarity=0.173 Sum_probs=27.7
Q ss_pred cccHHHHHHhcCCCHHHHHHHHHHHHHcCc
Q psy6552 195 HISVSVLNNELNWSTERAQHALDFMVQEGY 224 (254)
Q Consensus 195 ~vt~~~l~~~l~ws~~ra~~~L~~l~~~G~ 224 (254)
.+|..+|++-+|.+++-.-..|..|.++|+
T Consensus 178 ~~t~~~iA~~lg~sr~tvsR~l~~L~~~gi 207 (237)
T 3fx3_A 178 PYDKMLIAGRLGMKPESLSRAFSRLKAAGV 207 (237)
T ss_dssp CSCTHHHHHHTTCCHHHHHHHHHHHGGGTE
T ss_pred cCCHHHHHHHhCCCHHHHHHHHHHHHHCCe
Confidence 367899999999999999999999999994
No 424
>1k94_A Grancalcin; penta-EF-hand protein, calcium binding protein, metal binding protein; 1.70A {Homo sapiens} SCOP: a.39.1.8 PDB: 1k95_A 1f4q_A 1f4o_A
Probab=20.21 E-value=2.6e+02 Score=20.51 Aligned_cols=14 Identities=14% Similarity=0.306 Sum_probs=10.0
Q ss_pred HHHHHHHHHcCCCc
Q psy6552 65 RHFQEMCASIGVDP 78 (254)
Q Consensus 65 ~~f~~mc~~lGVdP 78 (254)
.+|..++..+|++|
T Consensus 19 ~el~~~l~~lg~~~ 32 (165)
T 1k94_A 19 EELQRCLTQSGING 32 (165)
T ss_dssp HHHHHHHHHHTTTT
T ss_pred HHHHHHHHHhcccc
Confidence 46777788888754
No 425
>3zwh_A Protein S100-A4; Ca-binding protein-motor protein complex, S100 proteins, EF-; 1.94A {Homo sapiens}
Probab=20.15 E-value=2.5e+02 Score=20.18 Aligned_cols=44 Identities=16% Similarity=0.101 Sum_probs=29.1
Q ss_pred hcC--CceeHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHhhhhCC
Q psy6552 112 KNG--GLILLDELRTRLVKSRGKSLQHQDITNEDLLAAAKKLKIFGN 156 (254)
Q Consensus 112 ~nG--Gii~L~dl~~~~nr~Rg~~~~~~~IS~~Di~rA~~~L~~Lg~ 156 (254)
++| |.|+..||...+.+.-|... ...+|++++.+-++.+..=|.
T Consensus 25 ~dgd~G~Is~~EL~~~l~~~lg~~l-~~~~~~~ev~~~i~~~D~dgD 70 (104)
T 3zwh_A 25 KEGDKFKLNKSELKELLTRELPSWL-GKRTDEAAFQKLMSNLDSNRD 70 (104)
T ss_dssp SSSSTTSBCHHHHHHHHHHHCGGGS-CSSCCHHHHHHHHHHHCTTCS
T ss_pred cCCCCCeECHHHHHHHHHHHcchhc-cCCCCHHHHHHHHHHHcCCCC
Confidence 455 89999999988886433100 035788888888777765443
No 426
>2v9v_A Selenocysteine-specific elongation factor; transcription, protein conformational change, transcription elongation factor SELB; 1.10A {Moorella thermoacetica} SCOP: a.4.5.35 a.4.5.35
Probab=20.11 E-value=2.5e+02 Score=20.59 Aligned_cols=35 Identities=14% Similarity=0.160 Sum_probs=28.0
Q ss_pred cccHHHHHHhcCCCHHHHHHHHHHHHHcC-cEEEeC
Q psy6552 195 HISVSVLNNELNWSTERAQHALDFMVQEG-YAWIDT 229 (254)
Q Consensus 195 ~vt~~~l~~~l~ws~~ra~~~L~~l~~~G-~lwvD~ 229 (254)
.++.++++...|.+.....+.|+.++..| ++++|.
T Consensus 17 ~~~~~~l~~~~~l~~~~l~~~l~~l~~~~~~~~~~~ 52 (135)
T 2v9v_A 17 GLDWQEAATRASLSLEETRKLLQSMAAAGQVTLLRV 52 (135)
T ss_dssp CEEHHHHHHHHTCCHHHHHHHHHHHHHTTCEEEEEE
T ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHhCCcEEEEec
Confidence 35559999999999999999999986555 566664
No 427
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=20.09 E-value=3.3e+02 Score=23.21 Aligned_cols=80 Identities=18% Similarity=0.169 Sum_probs=51.9
Q ss_pred CCCCHHHHHHHHHHhhhhCCCeEEEEeCCceEEEEccCCCCChhHHHHHHHhhccCC-C--cccHHHHHHhcC---CCHH
Q psy6552 137 QDITNEDLLAAAKKLKIFGNGFSIIPIGQGQYLVQSIPGELSLDHSLVLQQVASKNE-A--HISVSVLNNELN---WSTE 210 (254)
Q Consensus 137 ~~IS~~Di~rA~~~L~~Lg~g~~l~~~~sg~~vv~s~p~els~D~~~il~l~~~~~~-g--~vt~~~l~~~l~---ws~~ 210 (254)
..|+++||.+|++.... . . +..+. ..++.++..++..+..... | +-....+++.+| .+..
T Consensus 256 ~~i~~~~v~~~~~~~~~----------~-~--~~~~~-~~l~~~~~~~l~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 321 (384)
T 2qby_B 256 GIIRKEHVDKAIVDYEQ----------E-R--LIEAV-KALPFHYKLALRSLIESEDVMSAHKMYTDLCNKFKQKPLSYR 321 (384)
T ss_dssp SCCCHHHHHHHHHHHHH----------H-H--HHHHH-HSSCHHHHHHHHHHHTCCBHHHHHHHHHHHHHHTTCCCCCHH
T ss_pred CccCHHHHHHHHHHHhc----------c-h--HHHHH-HcCCHHHHHHHHHHHHhcccChHHHHHHHHHHHcCCCCCCHH
Confidence 57999999999988753 0 0 01111 1255566666543331112 2 225567777776 5679
Q ss_pred HHHHHHHHHHHcCcEEEeCC
Q psy6552 211 RAQHALDFMVQEGYAWIDTQ 230 (254)
Q Consensus 211 ra~~~L~~l~~~G~lwvD~q 230 (254)
.+.++|..|+..|++.....
T Consensus 322 ~~~~~l~~L~~~gli~~~~~ 341 (384)
T 2qby_B 322 RFSDIISELDMFGIVKIRII 341 (384)
T ss_dssp HHHHHHHHHHHTTSEEEEEE
T ss_pred HHHHHHHHHHhCCCEEEEec
Confidence 99999999999999998764
Done!