RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy6552
         (254 letters)



>d1u5ta1 a.4.5.54 (A:20-164) Vacuolar sorting protein SNF8 {Baker's
           yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 145

 Score =  194 bits (495), Expect = 5e-64
 Identities = 47/153 (30%), Positives = 77/153 (50%), Gaps = 9/153 (5%)

Query: 24  GTSIQENQLEQLSQHLNTFRDKLESFASEYKNEIKKDAQFRRHFQEMCASIGVDPLASRK 83
             +I E Q  +L   L  F+++L  FA ++ +E++   +FR  F  MC+SIG+DPL+   
Sbjct: 2   NKTILEKQSVELRDQLMVFQERLVEFAKKHNSELQASPEFRSKFMHMCSSIGIDPLSLFD 61

Query: 84  GFWSLLGMGDFYYELSVQIVEVCLATNYKNGGLILLDELRTRLVKSRGKSLQHQDITNED 143
               L  + DFYYE+ ++++E+C  T   NGG+I   EL     +          +  +D
Sbjct: 62  RDKHLFTVNDFYYEVCLKVIEICRQTKDMNGGVISFQELEKVHFRKLN-------VGLDD 114

Query: 144 LLAAAKKLKIFGNGFSIIPIGQGQYLVQSIPGE 176
           L  +   LK     F I  I  G+  ++S+P E
Sbjct: 115 LEKSIDMLKSLE-CFEIFQIR-GKKFLRSVPNE 145


>d1u5ta2 a.4.5.54 (A:165-232) Vacuolar sorting protein SNF8 {Baker's
           yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 68

 Score = 87.9 bits (218), Expect = 2e-23
 Identities = 27/69 (39%), Positives = 37/69 (53%), Gaps = 2/69 (2%)

Query: 177 LSLDHSLVLQQVASKNEAHISVSVLNNELNWSTERAQHALDFMVQEGYAWIDTQSPQEHL 236
           L+ D + +L+ + S    + S+S+L   L W   R++ ALD MV  G  WID Q   E L
Sbjct: 1   LTSDQTKILE-ICSIL-GYSSISLLKANLGWEAVRSKSALDEMVANGLLWIDYQGGAEAL 58

Query: 237 YWFPSLFTE 245
           YW PS  T 
Sbjct: 59  YWDPSWITR 67


>d1zroa2 a.264.1.1 (A:283-596) Erythrocyte binding antigen region II
           {Plasmodium falciparum [TaxId: 5833]}
          Length = 314

 Score = 28.9 bits (64), Expect = 0.65
 Identities = 10/64 (15%), Positives = 26/64 (40%), Gaps = 8/64 (12%)

Query: 10  IQKQKLEQEKYKDKGTSIQENQLEQLSQHLNTFRDKL--ESFASEYKNEIKKDAQFRRHF 67
            Q ++ ++ +  +      E +  +   +L  + +K    +F  E+K E+  D      +
Sbjct: 256 KQAKQYQEYQKGNNYKMYSEFKSIKPEVYLKKYSEKCSNLNFEDEFKEELHSD------Y 309

Query: 68  QEMC 71
           +  C
Sbjct: 310 KNKC 313


>d2cxaa1 d.108.1.6 (A:1-232) Leucyl/phenylalanyl-tRNA-protein
           transferase, LFTR (Aat) {Escherichia coli [TaxId: 562]}
          Length = 232

 Score = 27.9 bits (62), Expect = 1.1
 Identities = 5/23 (21%), Positives = 8/23 (34%)

Query: 214 HALDFMVQEGYAWIDTQSPQEHL 236
              +  +  G   ID Q   +H 
Sbjct: 172 VFCEEFIGHGGKLIDCQVLNDHT 194


>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId:
           562]}
          Length = 195

 Score = 26.4 bits (58), Expect = 2.7
 Identities = 9/18 (50%), Positives = 11/18 (61%)

Query: 51  SEYKNEIKKDAQFRRHFQ 68
            EY+  I+KDA   R FQ
Sbjct: 161 DEYRQYIEKDAALERRFQ 178


>d1hr6a2 d.185.1.1 (A:234-470) Mitochondrial processing peptidase
           (MPP) alpha chain {Baker's yeast (Saccharomyces
           cerevisiae) [TaxId: 4932]}
          Length = 237

 Score = 26.0 bits (56), Expect = 3.8
 Identities = 16/134 (11%), Positives = 41/134 (30%), Gaps = 12/134 (8%)

Query: 48  SFASEYKNEIKKDAQFRRHFQEMCASIGVDPLASRKGFWSLLGMGDFYYELSVQIVEVCL 107
           S   +   +  +    + +       + +      +    L        E  +  +E   
Sbjct: 101 SCIPQAAPQAVEVIAQQMYNTFANKDLRLTEDEVSRAKNQLKSSLLMNLESKLVELEDMG 160

Query: 108 ATNYKNGGLILLDELRTRLVKSRGKSLQHQDITNEDLLAAAKKLKIFGNGFSIIPIGQGQ 167
                +G  I ++E+ +++          +D+  +D+   A+   IF    +    G+G+
Sbjct: 161 RQVLMHGRKIPVNEMISKI----------EDLKPDDISRVAE--MIFTGNVNNAGNGKGR 208

Query: 168 YLVQSIPGELSLDH 181
             V       S   
Sbjct: 209 ATVVMQGDRGSFGD 222


>d1ud0a_ a.8.4.1 (A:) DnaK {Rat (Rattus norvegicus) [TaxId:
          10116]}
          Length = 84

 Score = 24.7 bits (54), Expect = 4.4
 Identities = 10/48 (20%), Positives = 19/48 (39%), Gaps = 3/48 (6%)

Query: 12 KQKLEQEKYKDKGTSIQENQLEQLSQHLNTFRDKLESFASEYKNEIKK 59
          K  +E EK + K   I +   +++    N     L+   +  K E + 
Sbjct: 14 KATVEDEKLQGK---INDEDKQKILDKCNEIISWLDKNQTAEKEEFEH 58


>d1kiya_ a.128.1.5 (A:) Trichodiene synthase {Fusarium
           sporotrichioides [TaxId: 5514]}
          Length = 354

 Score = 26.0 bits (57), Expect = 5.0
 Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 1/42 (2%)

Query: 38  HLNTFRDKLESFASEYKNEIKKDAQFRRHFQEMCASIG-VDP 78
           HL   R +L     + K E  +DAQ    F E  A++G V P
Sbjct: 299 HLCDRRYRLSEIYEKVKEEKTEDAQKFCKFYEQAANVGAVSP 340


>d1bjta_ e.11.1.1 (A:) DNA topoisomerase II, C-terminal fragment
           (residues 410-1202) {Baker's yeast (Saccharomyces
           cerevisiae) [TaxId: 4932]}
          Length = 760

 Score = 25.6 bits (55), Expect = 7.4
 Identities = 14/53 (26%), Positives = 30/53 (56%), Gaps = 4/53 (7%)

Query: 12  KQKLEQEKYKDKGTSIQENQLEQLSQHLNTFRDKLESFASEYKNEIKKDAQFR 64
            QKL ++  ++K T ++   L +LS   + +   L++F   Y+  +++DA+ R
Sbjct: 711 YQKLLKQ-KQEKETELEN--LLKLS-AKDIWNTDLKAFEVGYQEFLQRDAEAR 759


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.317    0.133    0.383 

Gapped
Lambda     K      H
   0.267   0.0606    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 890,218
Number of extensions: 38539
Number of successful extensions: 130
Number of sequences better than 10.0: 1
Number of HSP's gapped: 126
Number of HSP's successfully gapped: 13
Length of query: 254
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 171
Effective length of database: 1,268,006
Effective search space: 216829026
Effective search space used: 216829026
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.1 bits)