BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6555
(178 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4FL0|A Chain A, Crystal Structure Of Ald1 From Arabidopsis Thaliana
pdb|4FL0|B Chain B, Crystal Structure Of Ald1 From Arabidopsis Thaliana
Length = 456
Score = 32.3 bits (72), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 34/69 (49%)
Query: 7 FIPTTGPTLTGSTVLDSNIIFSGLRILGEGLRVIPGTVKQCSDILQDNNIMAISPGGLYE 66
F TG L S + D + +G I+ + R++ + S+I Q + +S GGL E
Sbjct: 285 FAGFTGVRLGWSIIPDELLYSNGFPIINDFHRIVTTSFNGASNIAQAGGLACLSSGGLKE 344
Query: 67 AQLGDSYYK 75
+ ++YYK
Sbjct: 345 IRSVNNYYK 353
>pdb|2R8U|A Chain A, Structure Of Fragment Of Human End-Binding Protein 1 (Eb1)
Containing The N-Terminal Domain At 1.35 A Resolution
pdb|2R8U|B Chain B, Structure Of Fragment Of Human End-Binding Protein 1 (Eb1)
Containing The N-Terminal Domain At 1.35 A Resolution
Length = 268
Score = 31.6 bits (70), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 12/57 (21%), Positives = 29/57 (50%)
Query: 65 YEAQLGDSYYKLMWRRRMGFAKVAIEAKVPIIPIFTRNIRESFRTVGWLKSFWNKLY 121
++A+L Y + + GF ++ ++ +P+ + +++F V W K F++ Y
Sbjct: 63 FQAKLEHEYIQNFKILQAGFKRMGVDKIIPVDKLVKGKFQDNFEFVQWFKKFFDANY 119
>pdb|1VKA|A Chain A, Southeast Collaboratory For Structural Genomics:
Hypothetical Human Protein Q15691 N-Terminal Fragment
pdb|1VKA|B Chain B, Southeast Collaboratory For Structural Genomics:
Hypothetical Human Protein Q15691 N-Terminal Fragment
Length = 153
Score = 30.4 bits (67), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 12/57 (21%), Positives = 29/57 (50%)
Query: 65 YEAQLGDSYYKLMWRRRMGFAKVAIEAKVPIIPIFTRNIRESFRTVGWLKSFWNKLY 121
++A+L Y + + GF ++ ++ +P+ + +++F V W K F++ Y
Sbjct: 76 FQAKLEHEYIQNFKILQAGFKRMGVDKIIPVDKLVKGKFQDNFEFVQWFKKFFDANY 132
>pdb|1PA7|A Chain A, Crystal Structure Of Amino-Terminal Microtubule Binding
Domain Of Eb1
pdb|1UEG|A Chain A, Crystal Structure Of Amino-Terminal Microtubule Binding
Domain Of Eb1
Length = 130
Score = 29.6 bits (65), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 12/57 (21%), Positives = 29/57 (50%)
Query: 65 YEAQLGDSYYKLMWRRRMGFAKVAIEAKVPIIPIFTRNIRESFRTVGWLKSFWNKLY 121
++A+L Y + + GF ++ ++ +P+ + +++F V W K F++ Y
Sbjct: 63 FQAKLEHEYIQNFKILQAGFKRMGVDKIIPVDKLVKGKFQDNFEFVQWFKKFFDANY 119
>pdb|2QJZ|A Chain A, Structural Basis Of Microtubule Plus End Tracking By
Xmap215, Clip-170 And Eb1
pdb|2QJZ|B Chain B, Structural Basis Of Microtubule Plus End Tracking By
Xmap215, Clip-170 And Eb1
Length = 123
Score = 29.3 bits (64), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 12/57 (21%), Positives = 28/57 (49%)
Query: 65 YEAQLGDSYYKLMWRRRMGFAKVAIEAKVPIIPIFTRNIRESFRTVGWLKSFWNKLY 121
++A+L Y + + GF + ++ +P+ + +++F V W K F++ Y
Sbjct: 53 FQAKLEHEYIQNFKILQAGFKRXGVDKIIPVDKLVKGKFQDNFEFVQWFKKFFDANY 109
>pdb|1WYO|A Chain A, Solution Structure Of The Ch Domain Of Human Microtubule-
Associated Protein RpEB FAMILY MEMBER 3
Length = 159
Score = 29.3 bits (64), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 11/57 (19%), Positives = 27/57 (47%)
Query: 65 YEAQLGDSYYKLMWRRRMGFAKVAIEAKVPIIPIFTRNIRESFRTVGWLKSFWNKLY 121
++A+L Y + F K+ ++ +P+ + +++F + W K F++ Y
Sbjct: 70 FQAKLEHEYIHNFKVLQAAFKKMGVDKIIPVEKLVKGKFQDNFEFIQWFKKFFDANY 126
>pdb|1V5K|A Chain A, Solution Structure Of The Ch Domain From Mouse Eb-1
Length = 115
Score = 28.9 bits (63), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 11/54 (20%), Positives = 28/54 (51%)
Query: 65 YEAQLGDSYYKLMWRRRMGFAKVAIEAKVPIIPIFTRNIRESFRTVGWLKSFWN 118
++A+L Y + + GF ++ ++ +P+ + +++F V W K F++
Sbjct: 56 FQAKLEHEYIQNFKILQAGFKRMGVDKIIPVDKLVKGKFQDNFEFVQWFKKFFD 109
>pdb|2XQ2|B Chain B, Structure Of The K294a Mutant Of Vsglt
Length = 593
Score = 28.1 bits (61), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 5/68 (7%)
Query: 84 FAKVAIEAKVPIIPIFT-RNIRESFRTVGWLKSFWNKLYIYTRLPLVPIYGGFPVKLVTY 142
F + IE + IP F + + +T+ L FW LYI+ L V GG ++ T
Sbjct: 102 FLPIFIEKGIYTIPEFVEKRFNKKLKTI--LAVFWISLYIFVNLTSVLYLGGLALE--TI 157
Query: 143 VGEPIPYD 150
+G P+ Y
Sbjct: 158 LGIPLMYS 165
>pdb|2XQ2|A Chain A, Structure Of The K294a Mutant Of Vsglt
Length = 593
Score = 28.1 bits (61), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 5/68 (7%)
Query: 84 FAKVAIEAKVPIIPIFT-RNIRESFRTVGWLKSFWNKLYIYTRLPLVPIYGGFPVKLVTY 142
F + IE + IP F + + +T+ L FW LYI+ L V GG ++ T
Sbjct: 102 FLPIFIEKGIYTIPEFVEKRFNKKLKTI--LAVFWISLYIFVNLTSVLYLGGLALE--TI 157
Query: 143 VGEPIPYD 150
+G P+ Y
Sbjct: 158 LGIPLMYS 165
>pdb|3DH4|A Chain A, Crystal Structure Of SodiumSUGAR SYMPORTER WITH BOUND
GALACTOSE FROM Vibrio Parahaemolyticus
pdb|3DH4|B Chain B, Crystal Structure Of SodiumSUGAR SYMPORTER WITH BOUND
GALACTOSE FROM Vibrio Parahaemolyticus
pdb|3DH4|C Chain C, Crystal Structure Of SodiumSUGAR SYMPORTER WITH BOUND
GALACTOSE FROM Vibrio Parahaemolyticus
pdb|3DH4|D Chain D, Crystal Structure Of SodiumSUGAR SYMPORTER WITH BOUND
GALACTOSE FROM Vibrio Parahaemolyticus
Length = 530
Score = 28.1 bits (61), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 5/68 (7%)
Query: 84 FAKVAIEAKVPIIPIFT-RNIRESFRTVGWLKSFWNKLYIYTRLPLVPIYGGFPVKLVTY 142
F + IE + IP F + + +T+ L FW LYI+ L V GG ++ T
Sbjct: 73 FLPIFIEKGIYTIPEFVEKRFNKKLKTI--LAVFWISLYIFVNLTSVLYLGGLALE--TI 128
Query: 143 VGEPIPYD 150
+G P+ Y
Sbjct: 129 LGIPLMYS 136
>pdb|3CO1|A Chain A, Crystal Structure Of Microtubule Binding Domain Of Human
Eb3
Length = 132
Score = 27.7 bits (60), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 11/57 (19%), Positives = 27/57 (47%)
Query: 65 YEAQLGDSYYKLMWRRRMGFAKVAIEAKVPIIPIFTRNIRESFRTVGWLKSFWNKLY 121
++A+L Y + F K+ ++ +P+ + +++F + W K F++ Y
Sbjct: 65 FQAKLEHEYIHNFKVLQAAFKKMGVDKIIPVEKLVKGKFQDNFEFIQWFKKFFDANY 121
>pdb|1Y8Q|B Chain B, Sumo E1 Activating Enzyme Sae1-Sae2-Mg-Atp Complex
pdb|1Y8Q|D Chain D, Sumo E1 Activating Enzyme Sae1-Sae2-Mg-Atp Complex
pdb|1Y8R|B Chain B, Sumo E1 Activating Enzyme Sae1-Sae2-Sumo1-Mg-Atp Complex
pdb|1Y8R|E Chain E, Sumo E1 Activating Enzyme Sae1-Sae2-Sumo1-Mg-Atp Complex
Length = 640
Score = 27.3 bits (59), Expect = 4.9, Method: Composition-based stats.
Identities = 11/32 (34%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Query: 20 VLDSNIIFSGLRILGEGLRVIPGTVKQCSDIL 51
+ +N + +GL +L EGL+++ G + QC I
Sbjct: 387 IATTNAVIAGLIVL-EGLKILSGKIDQCRTIF 417
>pdb|3KYC|B Chain B, Human Sumo E1 Complex With A Sumo1-Amp Mimic
Length = 660
Score = 27.3 bits (59), Expect = 4.9, Method: Composition-based stats.
Identities = 11/32 (34%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Query: 20 VLDSNIIFSGLRILGEGLRVIPGTVKQCSDIL 51
+ +N + +GL +L EGL+++ G + QC I
Sbjct: 407 IATTNAVIAGLIVL-EGLKILSGKIDQCRTIF 437
>pdb|3KYD|B Chain B, Human Sumo E1~sumo1-amp Tetrahedral Intermediate Mimic
Length = 551
Score = 27.3 bits (59), Expect = 5.0, Method: Composition-based stats.
Identities = 11/32 (34%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Query: 20 VLDSNIIFSGLRILGEGLRVIPGTVKQCSDIL 51
+ +N + +GL +L EGL+++ G + QC I
Sbjct: 389 IATTNAVIAGLIVL-EGLKILSGKIDQCRTIF 419
>pdb|4AKS|A Chain A, Patg Macrocyclase Domain
pdb|4AKS|B Chain B, Patg Macrocyclase Domain
Length = 360
Score = 26.6 bits (57), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 7/46 (15%)
Query: 21 LDSNIIFSGL---RILGEGLRVIPGTVKQCSDILQDNNIMAISPGG 63
L +NII EG ++ +K+C QDNN++ +SP G
Sbjct: 184 LGANIIHCAFCRPTQTSEGEEILVQAIKKC----QDNNVLIVSPTG 225
>pdb|4AKT|A Chain A, Patg Macrocyclase In Complex With Peptide
pdb|4AKT|B Chain B, Patg Macrocyclase In Complex With Peptide
Length = 360
Score = 26.6 bits (57), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 7/46 (15%)
Query: 21 LDSNIIFSGL---RILGEGLRVIPGTVKQCSDILQDNNIMAISPGG 63
L +NII EG ++ +K+C QDNN++ +SP G
Sbjct: 184 LGANIIHCAFCRPTQTSEGEEILVQAIKKC----QDNNVLIVSPTG 225
>pdb|4H6X|A Chain A, Structure Of Patellamide Maturation Protease Patg
pdb|4H6X|B Chain B, Structure Of Patellamide Maturation Protease Patg
Length = 357
Score = 26.6 bits (57), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 7/46 (15%)
Query: 21 LDSNIIFSGL---RILGEGLRVIPGTVKQCSDILQDNNIMAISPGG 63
L +NII EG ++ +K+C QDNN++ +SP G
Sbjct: 166 LGANIIHCAFCRPTQTSEGEEILVQAIKKC----QDNNVLIVSPTG 207
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.143 0.442
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,867,056
Number of Sequences: 62578
Number of extensions: 250592
Number of successful extensions: 500
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 492
Number of HSP's gapped (non-prelim): 18
length of query: 178
length of database: 14,973,337
effective HSP length: 92
effective length of query: 86
effective length of database: 9,216,161
effective search space: 792589846
effective search space used: 792589846
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (23.1 bits)